Query 006246
Match_columns 654
No_of_seqs 757 out of 4758
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 19:52:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006246.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006246hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.8E-39 6E-44 358.3 36.8 431 73-514 61-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 3.3E-38 1.1E-42 348.2 33.3 453 39-499 93-584 (597)
3 4g26_A Pentatricopeptide repea 100.0 2.2E-27 7.5E-32 251.9 20.9 198 248-446 8-223 (501)
4 1w3b_A UDP-N-acetylglucosamine 99.9 9.5E-25 3.3E-29 226.8 38.5 357 106-499 7-373 (388)
5 1w3b_A UDP-N-acetylglucosamine 99.9 9.1E-25 3.1E-29 227.0 37.5 330 178-513 9-367 (388)
6 4g26_A Pentatricopeptide repea 99.9 1.4E-26 4.9E-31 245.6 20.3 201 278-479 7-224 (501)
7 2gw1_A Mitochondrial precursor 99.9 9.1E-23 3.1E-27 220.0 31.8 425 67-499 8-483 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 4.2E-21 1.4E-25 203.4 34.3 299 168-472 26-370 (450)
9 3fp2_A TPR repeat-containing p 99.9 4.2E-21 1.5E-25 208.2 33.8 423 65-499 25-496 (537)
10 2y4t_A DNAJ homolog subfamily 99.9 2.5E-21 8.5E-26 205.1 30.8 296 196-499 23-363 (450)
11 2gw1_A Mitochondrial precursor 99.9 9.1E-21 3.1E-25 204.2 30.6 425 38-471 14-489 (514)
12 3fp2_A TPR repeat-containing p 99.8 5.4E-19 1.8E-23 191.6 30.3 410 38-459 33-488 (537)
13 3ieg_A DNAJ homolog subfamily 99.8 7.6E-18 2.6E-22 172.0 33.4 295 200-499 4-340 (359)
14 1b89_A Protein (clathrin heavy 99.8 3.9E-18 1.3E-22 172.5 27.4 366 80-482 16-405 (449)
15 3ieg_A DNAJ homolog subfamily 99.8 2E-16 6.7E-21 161.4 32.7 317 135-477 5-352 (359)
16 2xm6_A Protein corresponding t 99.8 3.1E-15 1.1E-19 160.0 40.0 336 146-497 56-435 (490)
17 2ooe_A Cleavage stimulation fa 99.8 1.2E-15 4.2E-20 164.9 36.9 418 53-498 2-496 (530)
18 3hym_B Cell division cycle pro 99.8 3.2E-16 1.1E-20 158.0 29.1 259 197-459 20-296 (330)
19 3hym_B Cell division cycle pro 99.8 7.7E-16 2.6E-20 155.1 31.8 269 228-499 20-304 (330)
20 2xm6_A Protein corresponding t 99.7 3.3E-15 1.1E-19 159.9 36.2 334 146-497 92-470 (490)
21 1b89_A Protein (clathrin heavy 99.7 4.2E-17 1.5E-21 165.0 20.1 284 145-459 15-308 (449)
22 1xi4_A Clathrin heavy chain; a 99.7 3.8E-14 1.3E-18 159.2 44.7 397 38-479 993-1415(1630)
23 1fch_A Peroxisomal targeting s 99.7 1.5E-16 5.3E-21 163.2 22.5 291 178-493 35-358 (368)
24 3mkr_A Coatomer subunit epsilo 99.7 2.5E-15 8.4E-20 148.6 29.2 261 240-510 9-283 (291)
25 1fch_A Peroxisomal targeting s 99.7 4.2E-16 1.4E-20 159.9 24.3 296 142-458 34-355 (368)
26 1xi4_A Clathrin heavy chain; a 99.7 1.3E-13 4.3E-18 155.1 44.9 323 137-491 989-1342(1630)
27 2ooe_A Cleavage stimulation fa 99.7 2.3E-14 7.9E-19 154.9 36.7 406 27-459 12-489 (530)
28 4eqf_A PEX5-related protein; a 99.7 4.4E-16 1.5E-20 159.8 21.8 226 197-425 63-309 (365)
29 4eqf_A PEX5-related protein; a 99.7 2E-16 6.7E-21 162.4 18.0 259 229-491 64-353 (365)
30 3cv0_A Peroxisome targeting si 99.7 1.3E-15 4.3E-20 153.3 18.5 272 198-495 20-316 (327)
31 3cv0_A Peroxisome targeting si 99.7 1.1E-14 3.7E-19 146.5 24.8 269 167-459 20-312 (327)
32 3spa_A Mtrpol, DNA-directed RN 99.7 8.2E-17 2.8E-21 175.3 9.3 131 328-459 124-262 (1134)
33 3mkr_A Coatomer subunit epsilo 99.7 1.5E-14 5E-19 143.1 23.4 239 145-391 11-264 (291)
34 4g1t_A Interferon-induced prot 99.6 2.6E-14 8.9E-19 152.0 26.6 373 97-499 50-464 (472)
35 3spa_A Mtrpol, DNA-directed RN 99.6 3.9E-16 1.3E-20 170.0 8.9 147 230-376 127-286 (1134)
36 3uq3_A Heat shock protein STI1 99.6 1.1E-13 3.7E-18 133.8 19.7 224 262-495 6-237 (258)
37 4g1t_A Interferon-induced prot 99.6 3.1E-12 1.1E-16 135.9 31.7 309 168-507 51-414 (472)
38 3u4t_A TPR repeat-containing p 99.5 6.2E-13 2.1E-17 129.9 22.1 230 266-499 8-255 (272)
39 3e4b_A ALGK; tetratricopeptide 99.5 9.3E-13 3.2E-17 138.8 23.7 242 39-291 12-281 (452)
40 1ouv_A Conserved hypothetical 99.5 7.8E-12 2.7E-16 122.3 27.2 226 260-498 5-255 (273)
41 2ho1_A Type 4 fimbrial biogene 99.5 5.1E-12 1.7E-16 121.8 24.3 167 331-499 71-243 (252)
42 3e4b_A ALGK; tetratricopeptide 99.5 2.2E-12 7.6E-17 135.9 23.3 331 80-459 16-384 (452)
43 1xnf_A Lipoprotein NLPI; TPR, 99.5 3.2E-12 1.1E-16 124.8 22.2 220 274-499 18-249 (275)
44 3u4t_A TPR repeat-containing p 99.5 6.4E-12 2.2E-16 122.6 24.3 244 231-476 4-266 (272)
45 2h6f_A Protein farnesyltransfe 99.5 1.7E-12 5.7E-17 132.8 20.5 245 261-511 97-366 (382)
46 2pl2_A Hypothetical conserved 99.5 1.7E-12 5.9E-17 122.2 19.2 191 262-458 6-210 (217)
47 4e6h_A MRNA 3'-END-processing 99.5 1.8E-10 6.1E-15 125.7 36.8 425 50-499 52-575 (679)
48 2pl2_A Hypothetical conserved 99.5 3.3E-12 1.1E-16 120.2 19.0 194 293-491 2-211 (217)
49 3uq3_A Heat shock protein STI1 99.5 5.7E-12 1.9E-16 121.6 21.2 188 260-459 37-233 (258)
50 2q7f_A YRRB protein; TPR, prot 99.4 2.6E-12 8.8E-17 122.9 18.0 190 306-499 33-227 (243)
51 2vq2_A PILW, putative fimbrial 99.4 1.5E-11 5E-16 116.0 22.8 201 261-499 8-216 (225)
52 2ho1_A Type 4 fimbrial biogene 99.4 2.1E-11 7.1E-16 117.4 23.2 194 261-459 37-235 (252)
53 1xnf_A Lipoprotein NLPI; TPR, 99.4 5.3E-12 1.8E-16 123.2 18.6 212 201-420 45-269 (275)
54 1ouv_A Conserved hypothetical 99.4 6.9E-11 2.4E-15 115.5 25.9 219 198-425 5-250 (273)
55 2vq2_A PILW, putative fimbrial 99.4 3.3E-11 1.1E-15 113.5 21.6 196 229-425 7-210 (225)
56 4a1s_A PINS, partner of inscut 99.4 4.1E-12 1.4E-16 132.3 16.2 266 201-497 50-375 (411)
57 2ond_A Cleavage stimulation fa 99.4 1.5E-10 5E-15 115.4 26.7 218 278-499 33-275 (308)
58 2h6f_A Protein farnesyltransfe 99.4 3.4E-11 1.2E-15 123.0 22.0 239 233-477 100-365 (382)
59 3sf4_A G-protein-signaling mod 99.4 6.2E-12 2.1E-16 130.3 16.9 197 262-458 88-332 (406)
60 3vtx_A MAMA; tetratricopeptide 99.4 2E-11 6.9E-16 111.4 17.8 167 330-499 4-175 (184)
61 2q7f_A YRRB protein; TPR, prot 99.4 1.1E-11 3.9E-16 118.4 16.8 193 262-459 24-219 (243)
62 3ro2_A PINS homolog, G-protein 99.4 1.1E-11 3.6E-16 124.6 17.2 266 201-497 7-335 (338)
63 3sf4_A G-protein-signaling mod 99.4 1.6E-11 5.3E-16 127.3 18.2 266 233-498 12-340 (406)
64 4a1s_A PINS, partner of inscut 99.3 1.1E-11 3.8E-16 129.0 15.9 261 169-459 49-369 (411)
65 3ro2_A PINS homolog, G-protein 99.3 2.1E-11 7.2E-16 122.4 17.4 260 170-459 7-329 (338)
66 3ulq_A Response regulator aspa 99.3 2.3E-11 8E-16 125.4 18.1 230 267-496 109-370 (383)
67 3nf1_A KLC 1, kinesin light ch 99.3 4.4E-11 1.5E-15 118.9 16.1 235 263-497 29-310 (311)
68 3q15_A PSP28, response regulat 99.3 2.3E-09 7.9E-14 110.1 28.0 228 266-494 106-365 (378)
69 3as5_A MAMA; tetratricopeptide 99.2 4.7E-10 1.6E-14 101.8 19.3 166 331-499 8-178 (186)
70 3ulq_A Response regulator aspa 99.2 4.4E-10 1.5E-14 115.8 21.1 160 263-425 186-367 (383)
71 2ond_A Cleavage stimulation fa 99.2 3.5E-09 1.2E-13 105.3 25.5 208 216-426 33-270 (308)
72 4abn_A Tetratricopeptide repea 99.2 3.7E-10 1.3E-14 119.7 18.1 188 297-489 103-316 (474)
73 3vtx_A MAMA; tetratricopeptide 99.2 2.3E-09 7.9E-14 97.5 20.6 159 263-424 7-168 (184)
74 4e6h_A MRNA 3'-END-processing 99.2 6.8E-08 2.3E-12 105.4 34.4 406 27-459 65-567 (679)
75 4abn_A Tetratricopeptide repea 99.2 5.1E-10 1.7E-14 118.6 17.4 209 246-459 84-318 (474)
76 4i17_A Hypothetical protein; T 99.2 2.3E-09 7.7E-14 101.4 19.8 194 295-499 6-214 (228)
77 3nf1_A KLC 1, kinesin light ch 99.1 2.9E-10 9.8E-15 112.9 12.4 158 201-358 29-222 (311)
78 1hz4_A MALT regulatory protein 99.1 7.9E-08 2.7E-12 98.3 30.4 163 263-425 137-321 (373)
79 4gyw_A UDP-N-acetylglucosamine 99.1 6.5E-10 2.2E-14 122.8 15.3 163 330-497 8-177 (723)
80 3q15_A PSP28, response regulat 99.1 5.5E-09 1.9E-13 107.3 20.5 189 201-390 143-364 (378)
81 1hz4_A MALT regulatory protein 99.1 1.3E-08 4.5E-13 104.1 22.5 260 205-494 20-322 (373)
82 1qqe_A Vesicular transport pro 99.1 4E-09 1.4E-13 104.0 17.8 167 332-498 78-273 (292)
83 3as5_A MAMA; tetratricopeptide 99.0 1.7E-08 5.7E-13 91.3 19.5 155 234-425 12-172 (186)
84 3edt_B KLC 2, kinesin light ch 99.0 7.3E-09 2.5E-13 100.9 17.4 163 332-494 86-281 (283)
85 4gyw_A UDP-N-acetylglucosamine 99.0 9.9E-09 3.4E-13 113.3 18.5 161 261-425 9-173 (723)
86 3qky_A Outer membrane assembly 99.0 2.4E-08 8.1E-13 96.6 18.9 179 330-511 14-241 (261)
87 2fo7_A Synthetic consensus TPR 99.0 1.5E-08 5E-13 86.2 15.5 132 364-498 3-136 (136)
88 3mv2_B Coatomer subunit epsilo 99.0 7.1E-08 2.4E-12 93.5 21.4 191 315-513 85-304 (310)
89 3edt_B KLC 2, kinesin light ch 99.0 6E-09 2E-13 101.6 14.0 210 248-459 26-278 (283)
90 4i17_A Hypothetical protein; T 98.9 8.5E-08 2.9E-12 90.4 20.2 188 260-459 6-206 (228)
91 1qqe_A Vesicular transport pro 98.9 9E-08 3.1E-12 94.2 19.5 160 298-460 79-267 (292)
92 2uy1_A Cleavage stimulation fa 98.8 3.1E-06 1.1E-10 89.5 30.0 370 80-493 7-412 (493)
93 3urz_A Uncharacterized protein 98.8 8.3E-08 2.8E-12 89.2 15.3 127 367-498 59-190 (208)
94 3mv2_B Coatomer subunit epsilo 98.8 2.7E-07 9.1E-12 89.5 18.3 175 280-459 85-279 (310)
95 2ifu_A Gamma-SNAP; membrane fu 98.8 1.3E-07 4.4E-12 93.9 16.7 165 339-505 44-234 (307)
96 2pzi_A Probable serine/threoni 98.7 2.2E-07 7.4E-12 103.0 18.8 188 307-499 402-607 (681)
97 2fo7_A Synthetic consensus TPR 98.7 2.3E-07 8E-12 78.5 15.0 125 263-389 3-130 (136)
98 3dra_A Protein farnesyltransfe 98.7 3.7E-06 1.3E-10 82.3 24.6 219 275-499 47-293 (306)
99 2r5s_A Uncharacterized protein 98.7 2E-07 7E-12 83.9 14.5 155 334-493 9-172 (176)
100 3qky_A Outer membrane assembly 98.7 4E-07 1.4E-11 87.8 17.3 183 229-426 14-224 (261)
101 2pzi_A Probable serine/threoni 98.7 3E-07 1E-11 101.9 17.3 165 210-377 402-583 (681)
102 2vsy_A XCC0866; transferase, g 98.7 3.3E-07 1.1E-11 99.5 17.3 152 345-499 3-162 (568)
103 2yhc_A BAMD, UPF0169 lipoprote 98.7 5.7E-07 2E-11 84.6 16.1 181 298-499 6-218 (225)
104 3rjv_A Putative SEL1 repeat pr 98.6 1.1E-06 3.7E-11 81.8 17.6 172 315-496 5-199 (212)
105 3qou_A Protein YBBN; thioredox 98.6 3.2E-07 1.1E-11 90.0 14.5 162 328-493 114-283 (287)
106 1hh8_A P67PHOX, NCF-2, neutrop 98.6 3.9E-07 1.3E-11 84.7 14.5 146 334-499 9-155 (213)
107 4ga2_A E3 SUMO-protein ligase 98.6 5.9E-08 2E-12 84.9 8.0 135 370-511 5-143 (150)
108 2ifu_A Gamma-SNAP; membrane fu 98.6 1.9E-07 6.5E-12 92.6 12.7 151 334-486 79-253 (307)
109 3urz_A Uncharacterized protein 98.6 7E-07 2.4E-11 82.8 15.5 133 336-472 59-197 (208)
110 3qou_A Protein YBBN; thioredox 98.6 9.9E-07 3.4E-11 86.4 17.3 157 297-458 118-280 (287)
111 1hh8_A P67PHOX, NCF-2, neutrop 98.6 1.4E-06 4.7E-11 80.9 17.5 123 298-425 8-149 (213)
112 2r5s_A Uncharacterized protein 98.6 9.5E-07 3.2E-11 79.4 15.7 153 233-389 9-171 (176)
113 2uy1_A Cleavage stimulation fa 98.6 1.1E-05 3.9E-10 85.1 26.2 365 43-459 7-410 (493)
114 4ga2_A E3 SUMO-protein ligase 98.6 1.8E-07 6.1E-12 81.8 8.7 140 337-480 3-149 (150)
115 3rjv_A Putative SEL1 repeat pr 98.5 2.5E-06 8.7E-11 79.3 17.1 168 249-425 5-196 (212)
116 3u3w_A Transcriptional activat 98.5 1.2E-05 4E-10 79.0 22.2 158 337-494 81-266 (293)
117 2yhc_A BAMD, UPF0169 lipoprote 98.5 6.8E-06 2.3E-10 77.1 19.3 60 231-290 5-70 (225)
118 2qfc_A PLCR protein; TPR, HTH, 98.5 2.2E-06 7.4E-11 84.3 15.7 162 333-494 77-266 (293)
119 3gyz_A Chaperone protein IPGC; 98.5 1.5E-06 5.3E-11 75.6 12.9 112 394-507 32-146 (151)
120 4gco_A Protein STI-1; structur 98.5 1.2E-06 4.1E-11 73.8 11.6 99 399-499 15-115 (126)
121 2vsy_A XCC0866; transferase, g 98.4 3.1E-06 1.1E-10 91.8 16.5 146 244-391 3-157 (568)
122 3q7a_A Farnesyltransferase alp 98.4 8E-05 2.7E-09 73.7 24.8 221 271-497 64-335 (349)
123 2vgx_A Chaperone SYCD; alterna 98.4 1E-06 3.4E-11 76.7 9.9 105 397-503 21-127 (148)
124 2e2e_A Formate-dependent nitri 98.4 2.1E-06 7.1E-11 77.1 12.3 134 373-509 21-159 (177)
125 3gw4_A Uncharacterized protein 98.4 2.6E-06 9E-11 78.1 12.7 154 343-496 4-178 (203)
126 4f3v_A ESX-1 secretion system 98.4 9E-07 3.1E-11 84.7 9.3 126 366-497 106-240 (282)
127 3u3w_A Transcriptional activat 98.4 9.8E-06 3.4E-10 79.5 16.9 58 266-323 120-182 (293)
128 3dra_A Protein farnesyltransfe 98.3 0.00011 3.7E-09 71.9 23.4 144 244-389 124-285 (306)
129 2c2l_A CHIP, carboxy terminus 98.3 1.7E-06 5.8E-11 84.4 9.7 188 296-493 4-198 (281)
130 1a17_A Serine/threonine protei 98.3 1E-05 3.5E-10 71.3 14.0 129 362-493 13-145 (166)
131 3gw4_A Uncharacterized protein 98.3 4.5E-06 1.6E-10 76.5 11.9 48 242-289 4-54 (203)
132 4f3v_A ESX-1 secretion system 98.3 1.1E-05 3.9E-10 77.1 14.7 123 204-326 107-238 (282)
133 2qfc_A PLCR protein; TPR, HTH, 98.3 2.8E-05 9.5E-10 76.2 17.6 27 264-290 78-104 (293)
134 1a17_A Serine/threonine protei 98.2 1.3E-05 4.3E-10 70.7 13.3 124 332-458 14-142 (166)
135 2c2l_A CHIP, carboxy terminus 98.2 7E-06 2.4E-10 80.0 12.6 178 330-513 3-198 (281)
136 1na0_A Designed protein CTPR3; 98.2 2.3E-05 7.8E-10 64.9 13.8 34 465-498 77-110 (125)
137 3dss_A Geranylgeranyl transfer 98.2 0.0001 3.4E-09 72.6 20.1 225 273-504 41-315 (331)
138 2xcb_A PCRH, regulatory protei 98.2 1E-05 3.6E-10 69.5 11.7 101 399-501 20-122 (142)
139 3gyz_A Chaperone protein IPGC; 98.2 7.4E-06 2.5E-10 71.2 10.6 102 361-465 35-137 (151)
140 1na0_A Designed protein CTPR3; 98.2 1.5E-05 5E-10 66.1 11.7 115 362-479 9-125 (125)
141 4gco_A Protein STI-1; structur 98.2 1.9E-05 6.4E-10 66.4 12.2 93 364-459 15-107 (126)
142 3sz7_A HSC70 cochaperone (SGT) 98.2 2.1E-05 7.2E-10 69.5 13.1 102 397-500 11-114 (164)
143 2vyi_A SGTA protein; chaperone 98.2 3E-05 1E-09 64.8 13.4 116 362-480 12-129 (131)
144 1p5q_A FKBP52, FK506-binding p 98.1 2.7E-05 9.3E-10 78.0 14.4 131 361-493 146-293 (336)
145 2hr2_A Hypothetical protein; a 98.1 1.5E-05 5.1E-10 68.8 10.5 65 435-499 59-136 (159)
146 1wao_1 Serine/threonine protei 98.1 1.8E-05 6E-10 83.5 13.4 119 336-457 11-134 (477)
147 2lni_A Stress-induced-phosphop 98.1 2.8E-05 9.7E-10 65.3 12.4 96 361-459 15-110 (133)
148 1elw_A TPR1-domain of HOP; HOP 98.1 5.1E-05 1.8E-09 62.0 13.7 99 399-499 6-106 (118)
149 2e2e_A Formate-dependent nitri 98.1 3.8E-05 1.3E-09 68.7 13.8 116 308-425 22-143 (177)
150 2kck_A TPR repeat; tetratricop 98.1 2.1E-05 7E-10 63.8 10.6 100 398-499 7-111 (112)
151 2vgx_A Chaperone SYCD; alterna 98.1 1.6E-05 5.6E-10 68.9 10.2 95 331-426 21-118 (148)
152 2fbn_A 70 kDa peptidylprolyl i 98.1 9.1E-06 3.1E-10 74.5 8.8 121 337-459 10-148 (198)
153 2xev_A YBGF; tetratricopeptide 98.1 3.6E-05 1.2E-09 64.5 11.9 96 402-500 7-111 (129)
154 3upv_A Heat shock protein STI1 98.1 2E-05 6.8E-10 66.0 10.1 95 399-495 6-102 (126)
155 2lni_A Stress-induced-phosphop 98.1 4.5E-05 1.5E-09 64.1 12.2 115 329-447 14-132 (133)
156 2vyi_A SGTA protein; chaperone 98.0 6.6E-05 2.2E-09 62.6 13.1 93 262-356 13-105 (131)
157 3q49_B STIP1 homology and U bo 98.0 5E-05 1.7E-09 64.4 12.3 101 396-498 8-110 (137)
158 1hxi_A PEX5, peroxisome target 98.0 2.1E-05 7.1E-10 65.5 9.5 97 400-498 20-118 (121)
159 2dba_A Smooth muscle cell asso 98.0 0.00013 4.5E-09 62.5 14.9 99 398-499 29-133 (148)
160 3ro3_A PINS homolog, G-protein 98.0 2.4E-05 8.2E-10 68.2 10.2 97 399-495 51-159 (164)
161 4gcn_A Protein STI-1; structur 98.0 6.4E-05 2.2E-09 63.1 12.1 106 363-497 9-115 (127)
162 1elr_A TPR2A-domain of HOP; HO 98.0 6.6E-05 2.2E-09 62.7 12.3 102 364-497 6-111 (131)
163 4gcn_A Protein STI-1; structur 98.0 5.2E-05 1.8E-09 63.7 11.3 62 437-498 12-75 (127)
164 3q7a_A Farnesyltransferase alp 98.0 0.0016 5.4E-08 64.4 23.5 129 215-345 105-256 (349)
165 1p5q_A FKBP52, FK506-binding p 98.0 6E-05 2E-09 75.5 13.7 143 261-425 147-293 (336)
166 4b4t_Q 26S proteasome regulato 98.0 0.00022 7.4E-09 74.0 17.9 208 268-494 11-245 (434)
167 4b4t_Q 26S proteasome regulato 97.9 0.00019 6.4E-09 74.5 16.9 53 237-289 11-83 (434)
168 3upv_A Heat shock protein STI1 97.9 0.00011 3.7E-09 61.4 12.2 93 364-459 6-98 (126)
169 3dss_A Geranylgeranyl transfer 97.9 0.00048 1.6E-08 67.7 18.3 190 308-502 41-274 (331)
170 1elw_A TPR1-domain of HOP; HOP 97.9 0.00022 7.4E-09 58.1 13.7 107 362-471 4-112 (118)
171 3sz7_A HSC70 cochaperone (SGT) 97.9 0.00014 4.6E-09 64.1 13.2 92 333-425 13-107 (164)
172 2fbn_A 70 kDa peptidylprolyl i 97.9 1.9E-05 6.4E-10 72.3 7.6 158 239-417 13-176 (198)
173 2if4_A ATFKBP42; FKBP-like, al 97.9 2.7E-05 9.2E-10 78.1 9.0 99 399-499 232-333 (338)
174 1elr_A TPR2A-domain of HOP; HO 97.9 9.4E-05 3.2E-09 61.7 11.1 108 331-441 4-120 (131)
175 2xcb_A PCRH, regulatory protei 97.9 0.00018 6.2E-09 61.6 12.8 94 363-459 19-112 (142)
176 3q49_B STIP1 homology and U bo 97.8 0.00034 1.2E-08 59.1 13.8 96 361-459 8-103 (137)
177 2dba_A Smooth muscle cell asso 97.8 0.00036 1.2E-08 59.6 13.0 95 361-459 27-125 (148)
178 3rkv_A Putative peptidylprolyl 97.7 0.00012 4.1E-09 64.3 9.7 113 362-499 11-131 (162)
179 2kck_A TPR repeat; tetratricop 97.7 0.0003 1E-08 56.7 11.4 88 337-425 12-105 (112)
180 3ro3_A PINS homolog, G-protein 97.7 0.00017 5.9E-09 62.6 10.4 62 364-425 91-157 (164)
181 1kt0_A FKBP51, 51 kDa FK506-bi 97.6 0.00027 9.3E-09 73.9 12.3 121 363-485 269-405 (457)
182 1hxi_A PEX5, peroxisome target 97.6 0.00026 8.9E-09 58.7 9.8 87 337-424 23-112 (121)
183 1zu2_A Mitochondrial import re 97.6 4E-05 1.4E-09 66.0 4.7 96 412-509 17-135 (158)
184 3k9i_A BH0479 protein; putativ 97.6 3.5E-05 1.2E-09 63.6 4.1 65 435-499 29-95 (117)
185 1wao_1 Serine/threonine protei 97.6 0.00032 1.1E-08 73.8 12.3 117 303-421 13-134 (477)
186 1kt0_A FKBP51, 51 kDa FK506-bi 97.6 0.0007 2.4E-08 70.8 13.9 125 331-459 268-412 (457)
187 2xev_A YBGF; tetratricopeptide 97.5 0.0012 4.2E-08 54.8 12.5 86 369-459 9-102 (129)
188 1ihg_A Cyclophilin 40; ppiase 97.5 0.00078 2.7E-08 68.2 12.6 116 334-453 226-361 (370)
189 3k9i_A BH0479 protein; putativ 97.5 0.00013 4.4E-09 60.1 5.6 83 375-459 3-87 (117)
190 1dce_A Protein (RAB geranylger 97.5 0.0038 1.3E-07 66.9 18.2 151 346-499 44-226 (567)
191 3n71_A Histone lysine methyltr 97.4 0.00073 2.5E-08 70.7 12.0 124 370-493 317-463 (490)
192 3rkv_A Putative peptidylprolyl 97.4 0.00075 2.6E-08 59.1 9.9 94 331-425 11-125 (162)
193 1ihg_A Cyclophilin 40; ppiase 97.3 0.0012 4.1E-08 66.8 12.1 91 260-352 272-362 (370)
194 3n71_A Histone lysine methyltr 97.3 0.0012 4.3E-08 69.0 12.4 121 339-459 317-461 (490)
195 2kat_A Uncharacterized protein 97.3 0.00078 2.7E-08 55.0 8.8 67 433-499 19-87 (115)
196 2hr2_A Hypothetical protein; a 97.3 0.0012 4.1E-08 56.9 9.9 62 364-425 59-130 (159)
197 3ma5_A Tetratricopeptide repea 97.3 0.00038 1.3E-08 55.4 5.9 83 432-514 6-90 (100)
198 1klx_A Cysteine rich protein B 97.2 0.0012 4.1E-08 56.1 9.1 111 376-495 9-127 (138)
199 2if4_A ATFKBP42; FKBP-like, al 97.2 0.00089 3E-08 66.9 9.6 142 263-425 181-327 (338)
200 1klx_A Cysteine rich protein B 97.2 0.0051 1.7E-07 52.1 12.2 109 276-392 10-127 (138)
201 2l6j_A TPR repeat-containing p 97.1 0.00041 1.4E-08 56.0 4.8 94 362-459 4-104 (111)
202 3qwp_A SET and MYND domain-con 97.1 0.0059 2E-07 62.8 13.7 87 407-493 297-399 (429)
203 3mkq_A Coatomer beta'-subunit; 97.0 0.026 9E-07 63.5 20.4 154 176-356 607-761 (814)
204 3qww_A SET and MYND domain-con 97.0 0.0039 1.3E-07 64.1 12.2 90 410-499 311-421 (433)
205 2l6j_A TPR repeat-containing p 97.0 0.00042 1.5E-08 55.9 3.9 63 436-498 7-71 (111)
206 1dce_A Protein (RAB geranylger 97.0 0.019 6.6E-07 61.4 17.8 196 277-498 45-271 (567)
207 2kat_A Uncharacterized protein 96.9 0.0032 1.1E-07 51.1 8.2 26 364-389 21-46 (115)
208 3ma5_A Tetratricopeptide repea 96.8 0.0039 1.3E-07 49.3 7.8 63 362-425 7-69 (100)
209 1na3_A Designed protein CTPR2; 96.8 0.011 3.8E-07 45.1 10.1 61 364-425 11-71 (91)
210 1pc2_A Mitochondria fission pr 96.7 0.007 2.4E-07 51.4 9.2 84 431-517 30-124 (152)
211 1zu2_A Mitochondrial import re 96.7 0.0027 9.4E-08 54.5 6.3 94 310-406 16-133 (158)
212 3ly7_A Transcriptional activat 96.6 0.044 1.5E-06 54.1 15.2 138 360-499 192-344 (372)
213 1na3_A Designed protein CTPR2; 96.6 0.015 5.3E-07 44.3 9.9 79 262-342 10-88 (91)
214 2kc7_A BFR218_protein; tetratr 96.5 0.0072 2.5E-07 47.3 7.5 61 439-499 6-69 (99)
215 3mkq_A Coatomer beta'-subunit; 96.5 0.25 8.6E-06 55.4 23.2 103 340-460 661-763 (814)
216 2v5f_A Prolyl 4-hydroxylase su 96.4 0.015 5E-07 46.4 8.5 78 436-513 8-94 (104)
217 3mkq_B Coatomer subunit alpha; 96.1 0.27 9.2E-06 42.8 15.7 129 339-491 13-141 (177)
218 2kc7_A BFR218_protein; tetratr 96.1 0.0048 1.7E-07 48.4 4.1 56 369-425 7-63 (99)
219 3bee_A Putative YFRE protein; 96.1 0.039 1.3E-06 42.8 9.2 70 430-499 3-77 (93)
220 3qww_A SET and MYND domain-con 95.7 0.021 7.3E-07 58.6 7.9 57 332-388 341-408 (433)
221 3ly7_A Transcriptional activat 95.5 0.27 9.1E-06 48.5 14.7 70 361-435 276-345 (372)
222 3qwp_A SET and MYND domain-con 95.4 0.063 2.2E-06 55.1 10.4 86 340-425 296-399 (429)
223 1nzn_A CGI-135 protein, fissio 95.4 0.18 6.3E-06 41.0 10.9 80 431-513 33-119 (126)
224 3lvg_A Clathrin heavy chain 1; 95.2 2.1E-05 7.2E-10 78.8 -15.4 274 82-382 40-324 (624)
225 3mkq_B Coatomer subunit alpha; 95.0 1.6 5.5E-05 37.9 16.7 127 240-388 15-141 (177)
226 3lvg_A Clathrin heavy chain 1; 94.5 0.041 1.4E-06 55.6 5.5 365 63-456 52-535 (624)
227 1wy6_A Hypothetical protein ST 92.9 2.2 7.6E-05 34.9 12.0 84 243-328 74-157 (172)
228 3u64_A Protein TP_0956; tetrat 92.5 0.31 1.1E-05 46.1 7.7 51 447-497 218-272 (301)
229 3bee_A Putative YFRE protein; 92.4 1.5 5E-05 33.6 10.4 47 378-425 25-71 (93)
230 1pc2_A Mitochondria fission pr 92.3 0.67 2.3E-05 39.2 8.8 83 379-464 15-103 (152)
231 1y8m_A FIS1; mitochondria, unk 91.4 3.7 0.00013 34.0 11.9 48 467-517 79-130 (144)
232 3o48_A Mitochondria fission 1 91.2 1.2 4.2E-05 36.4 8.8 46 465-513 78-123 (134)
233 2v5f_A Prolyl 4-hydroxylase su 90.9 1.5 5.3E-05 34.2 9.3 59 367-425 10-74 (104)
234 4h7y_A Dual specificity protei 90.7 1.8 6E-05 36.3 9.4 112 95-208 10-137 (161)
235 1wy6_A Hypothetical protein ST 89.7 7.4 0.00025 31.9 15.5 63 365-429 94-156 (172)
236 4h7y_A Dual specificity protei 89.3 1.5 5.1E-05 36.7 7.8 53 446-498 73-127 (161)
237 2wpv_A GET4, UPF0363 protein Y 88.7 17 0.00059 34.8 17.7 132 67-211 35-177 (312)
238 2p58_C Putative type III secre 87.7 7.8 0.00027 29.6 10.5 86 311-401 22-107 (116)
239 3lpz_A GET4 (YOR164C homolog); 87.5 21 0.00073 34.4 19.4 130 67-209 37-177 (336)
240 2uwj_G Type III export protein 87.4 7.3 0.00025 29.7 9.8 86 311-401 21-106 (115)
241 3u64_A Protein TP_0956; tetrat 86.8 2.6 8.9E-05 39.8 8.9 66 263-328 201-272 (301)
242 3mv2_A Coatomer subunit alpha; 86.0 5.2 0.00018 38.2 10.5 61 455-515 195-257 (325)
243 4b4t_P 26S proteasome regulato 85.0 36 0.0012 34.6 17.6 185 275-459 30-244 (445)
244 1qsa_A Protein (soluble lytic 85.0 44 0.0015 35.6 30.8 249 234-493 76-347 (618)
245 1v54_E Cytochrome C oxidase po 84.8 6.4 0.00022 30.3 8.4 64 377-442 25-88 (109)
246 4ady_A RPN2, 26S proteasome re 84.4 57 0.002 36.5 21.9 214 240-459 384-620 (963)
247 4gns_B Protein CSD3, chitin bi 84.3 2.7 9.4E-05 45.8 8.9 121 104-226 254-398 (754)
248 4ady_A RPN2, 26S proteasome re 84.0 36 0.0012 38.0 17.6 260 177-445 383-673 (963)
249 2uwj_G Type III export protein 83.5 13 0.00045 28.4 9.9 78 148-229 21-98 (115)
250 3ltm_A Alpha-REP4; protein eng 83.5 23 0.0008 31.3 17.9 59 331-390 126-184 (211)
251 1nzn_A CGI-135 protein, fissio 83.1 2.9 9.9E-05 34.0 6.5 83 378-463 17-105 (126)
252 2p58_C Putative type III secre 83.0 14 0.00047 28.3 10.6 78 148-229 22-99 (116)
253 3txn_A 26S proteasome regulato 82.4 41 0.0014 33.4 20.7 91 266-356 104-206 (394)
254 4fhn_B Nucleoporin NUP120; pro 82.4 27 0.00093 40.5 17.0 164 234-415 816-989 (1139)
255 4gns_B Protein CSD3, chitin bi 81.3 14 0.00048 40.3 13.0 121 237-358 255-398 (754)
256 2ff4_A Probable regulatory pro 80.4 10 0.00035 37.9 11.0 69 366-435 175-247 (388)
257 3ffl_A Anaphase-promoting comp 80.2 10 0.00034 32.4 9.0 123 337-473 26-163 (167)
258 1zbp_A Hypothetical protein VP 80.0 24 0.00082 32.8 12.2 124 370-499 5-134 (273)
259 4fhn_B Nucleoporin NUP120; pro 79.0 49 0.0017 38.4 17.6 188 299-494 815-1050(1139)
260 2y69_E Cytochrome C oxidase su 78.3 13 0.00043 30.4 8.4 64 377-442 68-131 (152)
261 3ltm_A Alpha-REP4; protein eng 78.1 36 0.0012 30.0 19.8 110 329-447 93-202 (211)
262 3ltj_A Alpharep-4; protein eng 78.1 35 0.0012 29.8 19.1 60 330-390 120-179 (201)
263 3ffl_A Anaphase-promoting comp 77.9 27 0.00092 29.7 10.9 114 233-359 23-150 (167)
264 3txn_A 26S proteasome regulato 75.5 68 0.0023 31.9 16.7 23 368-390 105-127 (394)
265 4b4t_P 26S proteasome regulato 74.4 78 0.0027 32.1 20.9 195 244-458 30-263 (445)
266 2wpv_A GET4, UPF0363 protein Y 72.1 70 0.0024 30.5 22.9 180 210-426 24-217 (312)
267 1wdy_A 2-5A-dependent ribonucl 72.0 61 0.0021 29.8 14.7 15 80-94 15-29 (285)
268 1v54_E Cytochrome C oxidase po 71.7 18 0.0006 27.9 7.3 63 276-339 25-87 (109)
269 3ltj_A Alpharep-4; protein eng 71.5 51 0.0017 28.7 20.1 81 196-276 56-136 (201)
270 2ff4_A Probable regulatory pro 69.1 16 0.00054 36.5 9.0 68 265-333 175-247 (388)
271 1oyz_A Hypothetical protein YI 68.7 74 0.0025 29.4 20.7 122 196-324 139-262 (280)
272 3mkr_B Coatomer subunit alpha; 68.6 12 0.0004 35.8 7.2 61 455-515 186-248 (320)
273 1wdy_A 2-5A-dependent ribonucl 67.4 76 0.0026 29.1 13.6 83 103-194 7-95 (285)
274 3o48_A Mitochondria fission 1 66.2 25 0.00086 28.6 7.7 71 393-464 36-110 (134)
275 3lpz_A GET4 (YOR164C homolog); 65.2 1E+02 0.0035 29.7 24.4 167 233-425 38-215 (336)
276 1y8m_A FIS1; mitochondria, unk 64.9 42 0.0014 27.7 8.9 70 394-464 36-109 (144)
277 1qsa_A Protein (soluble lytic 64.4 1.5E+02 0.0052 31.4 35.2 197 276-490 229-438 (618)
278 3kea_A K1L; tropism, ANK repea 56.7 1.2E+02 0.004 28.2 12.3 11 81-91 10-20 (285)
279 4b4t_R RPN7, 26S proteasome re 56.0 97 0.0033 31.1 12.1 57 333-389 133-195 (429)
280 1k1a_A B-cell lymphoma 3-encod 55.6 1.1E+02 0.0038 27.1 11.8 148 39-195 15-174 (241)
281 2y69_E Cytochrome C oxidase su 54.3 71 0.0024 26.1 8.2 61 278-339 70-130 (152)
282 2l0z_A Glycoprotein G2; zinc-b 52.9 4.4 0.00015 24.8 0.8 13 641-653 16-29 (42)
283 2nsz_A Programmed cell death p 52.8 62 0.0021 26.2 8.1 62 233-294 10-76 (129)
284 1n11_A Ankyrin; clathrin, BAND 52.8 1.8E+02 0.0063 28.8 14.7 48 40-94 21-71 (437)
285 3eiq_C Programmed cell death p 49.3 1.9E+02 0.0067 28.1 18.4 62 334-395 220-286 (358)
286 1k1a_A B-cell lymphoma 3-encod 49.3 1.3E+02 0.0046 26.5 11.1 22 109-130 17-38 (241)
287 2nsz_A Programmed cell death p 48.4 65 0.0022 26.0 7.6 62 334-395 10-76 (129)
288 1zbp_A Hypothetical protein VP 47.8 37 0.0013 31.5 6.6 51 407-459 7-57 (273)
289 3eu9_A Huntingtin-interacting 46.7 1.2E+02 0.004 26.8 10.2 21 174-194 45-65 (240)
290 1oyz_A Hypothetical protein YI 45.7 1.8E+02 0.0062 26.6 24.1 81 328-411 139-220 (280)
291 3eiq_C Programmed cell death p 45.5 2.2E+02 0.0076 27.6 13.1 65 233-297 220-289 (358)
292 3kea_A K1L; tropism, ANK repea 44.1 1.5E+02 0.005 27.5 10.7 106 80-194 41-152 (285)
293 2ion_A PDCD4, programmed cell 43.2 61 0.0021 27.1 6.8 62 233-294 12-78 (152)
294 4b4t_R RPN7, 26S proteasome re 41.5 85 0.0029 31.6 8.9 96 399-494 133-237 (429)
295 2ion_A PDCD4, programmed cell 39.9 61 0.0021 27.1 6.2 62 334-395 12-78 (152)
296 3esl_A Checkpoint serine/threo 39.0 1.4E+02 0.0047 26.3 8.5 49 312-360 95-144 (202)
297 3jxi_A Vanilloid receptor-rela 38.8 41 0.0014 30.8 5.7 52 108-159 12-72 (260)
298 4b4t_S RPN3, 26S proteasome re 36.8 1.1E+02 0.0038 31.5 8.7 60 331-390 231-298 (523)
299 3eu9_A Huntingtin-interacting 36.1 2.2E+02 0.0075 24.9 12.2 15 80-94 52-66 (240)
300 2dl1_A Spartin; SPG20, MIT, st 35.2 1.2E+02 0.0041 23.9 6.6 37 478-514 35-83 (116)
301 2d2s_A Exocyst complex compone 34.8 1.6E+02 0.0056 26.6 8.8 23 267-289 24-46 (235)
302 3aji_A 26S proteasome non-ATPa 32.9 2.5E+02 0.0084 24.5 11.1 13 80-92 16-28 (231)
303 3b7b_A Euchromatic histone-lys 32.1 1.6E+02 0.0055 25.9 8.6 138 40-194 18-167 (237)
304 3eab_A Spastin; spastin, MIT, 31.8 29 0.00098 25.9 2.5 36 479-514 33-77 (89)
305 2etb_A Transient receptor pote 31.6 56 0.0019 29.7 5.4 54 107-160 8-70 (256)
306 2k0q_A Putative uncharacterize 31.5 12 0.0004 26.2 0.3 23 630-652 8-30 (74)
307 2d2s_A Exocyst complex compone 30.3 1.1E+02 0.0039 27.6 6.9 23 104-126 24-46 (235)
308 1qc6_A EVH1 domain from ENA/VA 29.2 21 0.00073 29.1 1.6 41 602-650 44-88 (130)
309 3ygs_P Procaspase 9; apoptosis 29.0 55 0.0019 24.9 3.9 38 81-118 51-88 (97)
310 2r9g_A AAA ATPase, central reg 28.9 3E+02 0.01 24.1 8.8 38 374-412 26-63 (204)
311 3ygs_P Procaspase 9; apoptosis 28.8 83 0.0028 23.9 4.9 36 245-280 52-87 (97)
312 4a1g_A Mitotic checkpoint seri 28.2 2.2E+02 0.0076 23.7 7.7 10 281-290 85-94 (152)
313 2fe3_A Peroxide operon regulat 28.0 1.5E+02 0.0052 24.3 6.9 62 387-450 12-73 (145)
314 3hra_A Ankyrin repeat family p 27.7 2.5E+02 0.0086 23.7 8.9 179 237-421 9-199 (201)
315 2zu6_B Programmed cell death p 27.6 4E+02 0.014 25.2 12.5 28 202-229 6-33 (307)
316 3bqo_A Telomeric repeat-bindin 27.1 1.4E+02 0.0046 26.2 6.2 51 449-499 94-151 (211)
317 2r9g_A AAA ATPase, central reg 26.1 2.6E+02 0.009 24.4 7.9 45 265-310 15-62 (204)
318 4gq2_M Nucleoporin NUP120; bet 25.8 5.4E+02 0.018 28.9 12.9 108 236-345 816-950 (950)
319 1ug3_A EIF4GI, eukaryotic prot 25.8 2.5E+02 0.0084 27.0 8.9 21 174-194 17-37 (339)
320 2qx5_A Nucleoporin NIC96; mRNA 25.7 6.3E+02 0.022 26.9 20.2 80 205-287 300-382 (661)
321 4a1g_A Mitotic checkpoint seri 25.2 1E+02 0.0034 25.8 5.0 47 117-163 84-131 (152)
322 2xig_A Ferric uptake regulatio 24.7 2.1E+02 0.0072 23.6 7.2 61 388-450 18-78 (150)
323 4gq2_M Nucleoporin NUP120; bet 24.1 6.1E+02 0.021 28.4 13.0 104 267-376 816-950 (950)
324 1ug3_A EIF4GI, eukaryotic prot 23.8 4.4E+02 0.015 25.2 10.3 25 235-259 16-40 (339)
325 3aji_A 26S proteasome non-ATPa 22.7 3.7E+02 0.013 23.2 10.9 143 39-194 12-162 (231)
326 2pk8_A Uncharacterized protein 22.5 38 0.0013 25.2 1.7 47 542-596 13-59 (103)
327 2lo3_A SAGA-associated factor 22.2 20 0.00068 22.2 0.1 12 610-621 16-27 (44)
328 2p1h_A APAF-1, apoptotic prote 22.1 1.7E+02 0.0058 21.8 5.5 37 243-279 49-85 (94)
329 2rfa_A Transient receptor pote 21.8 3.9E+02 0.013 23.1 10.4 26 302-327 157-182 (232)
330 2rfa_A Transient receptor pote 21.3 3.8E+02 0.013 23.2 9.0 82 238-321 126-219 (232)
331 3d9h_A CDNA FLJ77766, highly s 20.9 4.8E+02 0.016 23.8 11.0 16 179-194 133-148 (285)
332 3e3v_A Regulatory protein RECX 20.7 3.1E+02 0.011 23.4 7.6 25 436-460 139-164 (177)
333 4b4t_S RPN3, 26S proteasome re 20.4 1.7E+02 0.006 30.0 6.7 64 435-498 233-303 (523)
334 1wty_A Hypothetical protein TT 20.4 2.9E+02 0.0099 21.6 6.8 69 377-451 3-71 (119)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.8e-39 Score=358.34 Aligned_cols=431 Identities=11% Similarity=-0.010 Sum_probs=367.6
Q ss_pred HhcccccCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCcHHH
Q 006246 73 KCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEG 152 (654)
Q Consensus 73 ~~y~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 152 (654)
..+.+ .|.+..+...|+.++.+++..|+.++..|.+.|++++|+.+|++|.. ..||..++..+..+|...|++++|
T Consensus 61 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A 136 (597)
T 2xpi_A 61 NNTST--DGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARA 136 (597)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccccc--cCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHH
Confidence 34566 78889999999999989999999999999999999999999999985 467889999999999999999999
Q ss_pred HHHHHHHHHhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCC-------------------ChhhHHHHHHHHHHcC
Q 006246 153 VQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKS-------------------DVICWNALIDGYLKCG 213 (654)
Q Consensus 153 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g 213 (654)
..+++.+... +++..+++.++.+|.++|++++|.++|+++.+. ++.+|+.++.+|.+.|
T Consensus 137 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 214 (597)
T 2xpi_A 137 KCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLS 214 (597)
T ss_dssp HHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcC
Confidence 9999988643 678899999999999999999999999975444 4889999999999999
Q ss_pred CHHHHHHHHHhcCCCCc---chH--------------------------------------HHHHHHHHhcCCHHHHHHH
Q 006246 214 DIEGAKELFKSTKDKNT---GSY--------------------------------------NAMISGFARFGRFEEARKL 252 (654)
Q Consensus 214 ~~~~A~~~~~~m~~~~~---~~~--------------------------------------~~li~~~~~~g~~~~A~~~ 252 (654)
++++|+++|++|.+.++ ..+ +.++.+|.+.|++++|.++
T Consensus 215 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 294 (597)
T 2xpi_A 215 NFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDY 294 (597)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHH
Confidence 99999999999975322 222 2235567788999999999
Q ss_pred HHhcCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCc
Q 006246 253 FNEMND--KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVD 330 (654)
Q Consensus 253 ~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 330 (654)
|+++.+ ++..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.++.+.|++++|.+++..+.+.. +.+
T Consensus 295 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 372 (597)
T 2xpi_A 295 LSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEK 372 (597)
T ss_dssp HHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTS
T ss_pred HHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-ccc
Confidence 999987 799999999999999999999999999999875 4478899999999999999999999999999765 567
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 006246 331 AVLGTALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSAC 407 (654)
Q Consensus 331 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 407 (654)
..+++.++.+|.++|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|++|.+.+ +.+..+|..++.+|
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 451 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQH 451 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 88999999999999999999999998764 478899999999999999999999999999864 44788999999999
Q ss_pred HccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHHh
Q 006246 408 AHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-------PMEPN--AAVWEALLGACRKH 478 (654)
Q Consensus 408 ~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~--~~~~~~ll~~~~~~ 478 (654)
.+.|++++|.++|+++.+. .+.+..+|+.++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.
T Consensus 452 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 529 (597)
T 2xpi_A 452 MQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL 529 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHh
Confidence 9999999999999999884 3446788999999999999999999999987 44777 88999999999999
Q ss_pred CChHHHHHHHHHHHhcCCCCC--------------CchHHHHHHHHHHhc
Q 006246 479 GEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKER 514 (654)
Q Consensus 479 g~~~~a~~~~~~~~~~~p~~~--------------~~~~a~~~~~~m~~~ 514 (654)
|++++|++.++++++++|++. +|++|.+.++.+.+.
T Consensus 530 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 530 KMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp TCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 999999999999999999886 899999998888764
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.3e-38 Score=348.18 Aligned_cols=453 Identities=7% Similarity=-0.052 Sum_probs=338.4
Q ss_pred hhcCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHhcccccCCChHHHHHHHhcCC--CCCcchHHHHHHHHHhCCCchH
Q 006246 39 NTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVH--KPNVFVWNSVLRACLEHNEPWR 116 (654)
Q Consensus 39 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~ 116 (654)
.+.+.|+++.|..++..+++.. |+..++..+..+|.+ .|++++|+.+|+.+. .++..+|+.++.+|.+.|++++
T Consensus 93 ~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 168 (597)
T 2xpi_A 93 DALMQQQYKCAAFVGEKVLDIT--GNPNDAFWLAQVYCC--TGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQG 168 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHH--TTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHccCchHHHHHHHHHHhhC--CCchHHHHHHHHHHH--cCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHH
Confidence 4455555555555555555332 344555555555555 555555555555552 3455555555555555555555
Q ss_pred HHHHHHHhHhC---------------CCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhc
Q 006246 117 VISLYSEMVGV---------------DSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACF 181 (654)
Q Consensus 117 A~~~~~~m~~~---------------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 181 (654)
|+++|+++... |.+++..+|..+..++.+.|++++|.++++++++.+ +.+...+..+...+...
T Consensus 169 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 247 (597)
T 2xpi_A 169 ALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLT 247 (597)
T ss_dssp HHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSC
T ss_pred HHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhccc
Confidence 55555532111 112234455555555555555555555555555543 22333333333333322
Q ss_pred CCHHHHHH--H-HhcCCC----CChhhHHHHHHHHHHcCCHHHHHHHHHhcCC--CCcchHHHHHHHHHhcCCHHHHHHH
Q 006246 182 GCVNKARQ--I-LDDGSK----SDVICWNALIDGYLKCGDIEGAKELFKSTKD--KNTGSYNAMISGFARFGRFEEARKL 252 (654)
Q Consensus 182 g~~~~A~~--~-~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~ 252 (654)
+..+.+.. + ++.+.. .....|+.++..|.+.|++++|.++|+++.+ ++..+|+.++.+|.+.|++++|.++
T Consensus 248 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 327 (597)
T 2xpi_A 248 ADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAI 327 (597)
T ss_dssp HHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred chhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHH
Confidence 22111110 0 111111 1223345556778889999999999999988 8999999999999999999999999
Q ss_pred HHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 006246 253 FNEMND---KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICV 329 (654)
Q Consensus 253 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 329 (654)
|+++.+ .+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..++..+...|.+.|++++|.++|+.+.+.. +.
T Consensus 328 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 405 (597)
T 2xpi_A 328 TTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQ 405 (597)
T ss_dssp HHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CC
Confidence 999863 367889999999999999999999999998653 4567889999999999999999999999998865 45
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 006246 330 DAVLGTALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSA 406 (654)
Q Consensus 330 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 406 (654)
+..+++.++.+|.+.|++++|.++|+++.. .+..+|+.++.+|.+.|++++|+++|++|.+.. +.+..+|..++..
T Consensus 406 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 484 (597)
T 2xpi_A 406 FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVV 484 (597)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 688999999999999999999999998764 478899999999999999999999999999864 4478899999999
Q ss_pred HHccCCHHHHHHHHHHHHHHc---CCCCC--cchHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHhC
Q 006246 407 CAHAGMIDRGLQALTYMQQMY---GIDPE--VEHYGCIVDLLGRAGYLAEAEEVISSM-PM-EPNAAVWEALLGACRKHG 479 (654)
Q Consensus 407 ~~~~g~~~~a~~~~~~~~~~~---g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g 479 (654)
|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.++++++ .. +.+..+|..+..+|...|
T Consensus 485 ~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 564 (597)
T 2xpi_A 485 AFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKK 564 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Confidence 999999999999999998743 66787 679999999999999999999999987 23 347999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCC
Q 006246 480 EVEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 480 ~~~~a~~~~~~~~~~~p~~~ 499 (654)
++++|.+.++++++++|++.
T Consensus 565 ~~~~A~~~~~~~l~~~p~~~ 584 (597)
T 2xpi_A 565 IPGLAITHLHESLAISPNEI 584 (597)
T ss_dssp CHHHHHHHHHHHHHHCTTCH
T ss_pred CHHHHHHHHHHHHhcCCCCh
Confidence 99999999999999999974
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=2.2e-27 Score=251.87 Aligned_cols=198 Identities=18% Similarity=0.264 Sum_probs=174.7
Q ss_pred HHHHHHHhcCCC-----CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCC---------hh
Q 006246 248 EARKLFNEMNDK-----DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGA---------LD 313 (654)
Q Consensus 248 ~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~---------~~ 313 (654)
.+..+++++.++ ....++.+|++|++.|++++|+++|++|.+.|++||..||+++|.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 344455555543 2346889999999999999999999999999999999999999999987664 67
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC----CCHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q 006246 314 QGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM----KEVFTWNAMIGGLAMHGRADDAIELFFKMQ 389 (654)
Q Consensus 314 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 389 (654)
.|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.. ||..+||+||.+|++.|+.++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999975 699999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHc
Q 006246 390 REKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRA 446 (654)
Q Consensus 390 ~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~ 446 (654)
+.|+.||..||+.||.+|++.|++++|.++|++|++. |..|+..+|+.++..|...
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999985 9999999999999988763
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=9.5e-25 Score=226.83 Aligned_cols=357 Identities=11% Similarity=0.032 Sum_probs=208.3
Q ss_pred HHHHhCCCchHHHHHHHHhHhCCCCCCcc-cHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCH
Q 006246 106 RACLEHNEPWRVISLYSEMVGVDSKPNKF-TYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCV 184 (654)
Q Consensus 106 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 184 (654)
..+.+.|++++|++.|+++.+. .|+.. .+..+...+...|++++|...+...++.. +.+...+..+...|.+.|++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 3445566666666666666553 34333 33333344555666666666666665543 34455555666666555555
Q ss_pred HHHHHHHhcC---CCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHhcCCC-C
Q 006246 185 NKARQILDDG---SKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDK-D 260 (654)
Q Consensus 185 ~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~ 260 (654)
++|.+.|+++ .+.+..+|..+...+.+.|++++|+..|+++.+. .| +
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----------------------------~p~~ 134 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY-----------------------------NPDL 134 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH-----------------------------CTTC
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------------------------CCCc
Confidence 5555555543 2333444555555555555555555555544321 11 2
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 006246 261 EITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDM 340 (654)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 340 (654)
...+..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+...+..+...
T Consensus 135 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 212 (388)
T 1w3b_A 135 YCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNV 212 (388)
T ss_dssp THHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 2334444444444455555555555544431 1123344444445555555555555555555443 2234455556666
Q ss_pred HHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 006246 341 YAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGL 417 (654)
Q Consensus 341 y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 417 (654)
+...|++++|...|++... .+..+|..+...|...|++++|++.|+++.+.+ +.+..++..+...+.+.|++++|.
T Consensus 213 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 291 (388)
T 1w3b_A 213 LKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAE 291 (388)
T ss_dssp HHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 6666666666666665442 245666777777777777777777777776643 224556777777777777777777
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChHHHHHHHHHHHhcC
Q 006246 418 QALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-PMEP-NAAVWEALLGACRKHGEVEFGERLGKILLEME 495 (654)
Q Consensus 418 ~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 495 (654)
+.|+++.+. .+.+...+..+..++.+.|++++|.+.++++ ...| +..+|..+...+.+.|++++|...++++++++
T Consensus 292 ~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 369 (388)
T 1w3b_A 292 DCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred HHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 777777763 3445667777777777777777777777766 3333 46777777777777788888888888887777
Q ss_pred CCCC
Q 006246 496 PQNR 499 (654)
Q Consensus 496 p~~~ 499 (654)
|++.
T Consensus 370 p~~~ 373 (388)
T 1w3b_A 370 PTFA 373 (388)
T ss_dssp TTCH
T ss_pred CCCH
Confidence 7754
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=9.1e-25 Score=227.00 Aligned_cols=330 Identities=14% Similarity=0.099 Sum_probs=264.7
Q ss_pred HHhcCCHHHHHHHHhcC---CCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHH
Q 006246 178 YACFGCVNKARQILDDG---SKSDVICWNALIDGYLKCGDIEGAKELFKSTKD---KNTGSYNAMISGFARFGRFEEARK 251 (654)
Q Consensus 178 y~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~ 251 (654)
+.+.|++++|.+.++++ .+.+...+..+...+.+.|++++|...++...+ .+..+|..+...|.+.|++++|..
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 88 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIE 88 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHH
Confidence 33444444444444432 223334444455555666666666666655543 345567777777777777777777
Q ss_pred HHHhcCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc-chHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 006246 252 LFNEMND--K-DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRK-FVLSCVLAACASLGALDQGIWIHDHVKRNSI 327 (654)
Q Consensus 252 ~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 327 (654)
.|+++.. | +..+|..+..++.+.|++++|++.|+++.+. .|+. ..+..+...+...|++++|.+.+..+.+..
T Consensus 89 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 165 (388)
T 1w3b_A 89 HYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ- 165 (388)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-
Confidence 7777653 3 5668999999999999999999999999886 4544 456667788889999999999999999875
Q ss_pred CCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHH
Q 006246 328 CVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVL 404 (654)
Q Consensus 328 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 404 (654)
+.+..++..+...|.+.|++++|...|+++.. .+...|..+...+...|++++|+..|++..+.. +.+..++..+.
T Consensus 166 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 244 (388)
T 1w3b_A 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLA 244 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHH
Confidence 44678899999999999999999999998874 367789999999999999999999999998863 23577899999
Q ss_pred HHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhCChH
Q 006246 405 SACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM--PMEPNAAVWEALLGACRKHGEVE 482 (654)
Q Consensus 405 ~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~ 482 (654)
..+...|++++|.+.|+++.+. -+.+...|..+..+|.+.|++++|.+.++++ ..+++..+|..+...+...|+++
T Consensus 245 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 322 (388)
T 1w3b_A 245 CVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIE 322 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999873 2334678999999999999999999999988 23457899999999999999999
Q ss_pred HHHHHHHHHHhcCCCCC--------------CchHHHHHHHHHHh
Q 006246 483 FGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKE 513 (654)
Q Consensus 483 ~a~~~~~~~~~~~p~~~--------------~~~~a~~~~~~m~~ 513 (654)
+|...+++++++.|++. ++++|...++.+.+
T Consensus 323 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 323 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999985 88999999988875
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=1.4e-26 Score=245.58 Aligned_cols=201 Identities=11% Similarity=0.167 Sum_probs=174.2
Q ss_pred HHHHHHHHHHHhCCCCCCc-chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCC---------H
Q 006246 278 KEALEVFNEMQRDKIKPRK-FVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGR---------L 347 (654)
Q Consensus 278 ~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~---------~ 347 (654)
..+..+.+++.+.++.+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3455667788877766543 46888999999999999999999999999999999999999999998765 7
Q ss_pred HHHHHHHhhcCC----CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006246 348 DMAWKVFEDMKM----KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYM 423 (654)
Q Consensus 348 ~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 423 (654)
+.|.++|++|.. ||.++||+||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|+.|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 889999999974 6999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHhC
Q 006246 424 QQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM---PMEPNAAVWEALLGACRKHG 479 (654)
Q Consensus 424 ~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~g 479 (654)
.+. |+.||..+|++||++|++.|++++|.+++++| +..|+..||+.++..|...+
T Consensus 167 ~~~-G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 167 VES-EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred Hhc-CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 985 99999999999999999999999999999999 68899999999999988753
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=9.1e-23 Score=219.96 Aligned_cols=425 Identities=10% Similarity=-0.016 Sum_probs=297.0
Q ss_pred HHHHHHHhcccccCCChHHHHHHHhcCC--CCCcchHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHh
Q 006246 67 VSGTLVKCHANSRFSNFELALKVFNSVH--KPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACS 144 (654)
Q Consensus 67 ~~~~Li~~y~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 144 (654)
.+..+...|.+ .|++++|+..|+++. .||..+|..+..++.+.|++++|+..|+++.+.+ +.+...+..+..++.
T Consensus 8 ~~~~~g~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFR--NKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHH--TSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 44455556666 677777777776665 3666667777777777777777777777766643 223345666666667
Q ss_pred ccCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCC----CChhhHHHHH---HHHHHcCCHHH
Q 006246 145 ITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSK----SDVICWNALI---DGYLKCGDIEG 217 (654)
Q Consensus 145 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li---~~~~~~g~~~~ 217 (654)
..|++++|...+..+.+.+ +++......++..+........+.+.+..+.. ++...++... ...........
T Consensus 85 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 7777777777777766655 23333444444444333333333333321100 0000000000 00000111111
Q ss_pred HHHHHHhcCC---------C-CcchHHHHHHHHHh---cCCHHHHHHHHHhcCC----------------C-CHhHHHHH
Q 006246 218 AKELFKSTKD---------K-NTGSYNAMISGFAR---FGRFEEARKLFNEMND----------------K-DEITWSAI 267 (654)
Q Consensus 218 A~~~~~~m~~---------~-~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~----------------~-~~~~~~~l 267 (654)
+...+..... | +...+..+...+.. .|++++|...|+++.+ + +...|..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 1111111111 1 13344444444444 8999999999988755 2 35578889
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCH
Q 006246 268 IDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRL 347 (654)
Q Consensus 268 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 347 (654)
...+...|++++|+..|+++.+.. |+...+..+..++...|++++|...+..+.+.. +.+..++..+...|.+.|++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCH
Confidence 999999999999999999998865 337778888899999999999999999998865 44677888999999999999
Q ss_pred HHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006246 348 DMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQ 424 (654)
Q Consensus 348 ~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 424 (654)
++|...|+++.. .+...|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+.
T Consensus 321 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 321 DQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp THHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999998753 367889999999999999999999999998863 3356788889999999999999999999998
Q ss_pred HHcCCCCC----cchHHHHHHHHHH---cCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHhCChHHHHHHHHHHHhcC
Q 006246 425 QMYGIDPE----VEHYGCIVDLLGR---AGYLAEAEEVISSM-PM-EPNAAVWEALLGACRKHGEVEFGERLGKILLEME 495 (654)
Q Consensus 425 ~~~g~~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 495 (654)
+...-.++ ...+..+...|.+ .|++++|.+.++++ .. +.+..+|..+...+...|++++|...++++++++
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 75332333 3388999999999 99999999999987 22 3468899999999999999999999999999999
Q ss_pred CCCC
Q 006246 496 PQNR 499 (654)
Q Consensus 496 p~~~ 499 (654)
|++.
T Consensus 480 ~~~~ 483 (514)
T 2gw1_A 480 RTME 483 (514)
T ss_dssp SSHH
T ss_pred cccH
Confidence 9986
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=4.2e-21 Score=203.36 Aligned_cols=299 Identities=11% Similarity=0.043 Sum_probs=145.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhcC---CCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC---CCcchHHHHHHHHH
Q 006246 168 VHVKSSGIQMYACFGCVNKARQILDDG---SKSDVICWNALIDGYLKCGDIEGAKELFKSTKD---KNTGSYNAMISGFA 241 (654)
Q Consensus 168 ~~~~~~li~~y~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~ 241 (654)
...+..+...|.+.|++++|..+|+++ .+.+..+|..+...|.+.|++++|+..|+++.+ .+..++..+...|.
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 105 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLL 105 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 344444555555555555555555443 233444555555555555555555555555433 22334455555555
Q ss_pred hcCCHHHHHHHHHhcCCC---CH---hHHHHH------------HHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHH
Q 006246 242 RFGRFEEARKLFNEMNDK---DE---ITWSAI------------IDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVL 303 (654)
Q Consensus 242 ~~g~~~~A~~~~~~~~~~---~~---~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 303 (654)
+.|++++|...|+++.+. +. ..|..+ ...+.+.|++++|+..|+++.+.. +.+...+..+.
T Consensus 106 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 184 (450)
T 2y4t_A 106 KQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRA 184 (450)
T ss_dssp HTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 555555555555554432 11 333333 223555555555555555555432 22334444555
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHH------------
Q 006246 304 AACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAM------------ 368 (654)
Q Consensus 304 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~l------------ 368 (654)
.++...|++++|.+.+..+.+.. +.+..++..++..|.+.|++++|...|+++.. .+...+..+
T Consensus 185 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 263 (450)
T 2y4t_A 185 ECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIES 263 (450)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555432 23344555555555555555555555554432 122333332
Q ss_pred HHHHHHcCChhHHHHHHHHHhhcCCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 006246 369 IGGLAMHGRADDAIELFFKMQREKMRPD-----RITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLL 443 (654)
Q Consensus 369 i~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~ 443 (654)
+..+...|++++|+.+|+++.+. .|+ ...+..+...+.+.|++++|...++.+.+. .+.+...|..+..+|
T Consensus 264 ~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~ 339 (450)
T 2y4t_A 264 AEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAY 339 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence 45555555555555555555543 232 224445555555555555555555555542 122344555555555
Q ss_pred HHcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 006246 444 GRAGYLAEAEEVISSM-PMEP-NAAVWEALL 472 (654)
Q Consensus 444 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll 472 (654)
...|++++|.+.++++ ...| +..++..+.
T Consensus 340 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 340 LIEEMYDEAIQDYETAQEHNENDQQIREGLE 370 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 5555555555555554 3333 244444443
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=4.2e-21 Score=208.22 Aligned_cols=423 Identities=9% Similarity=0.022 Sum_probs=315.4
Q ss_pred hhHHHHHHHhcccccCCChHHHHHHHhcCC---CCCcchHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHH
Q 006246 65 HYVSGTLVKCHANSRFSNFELALKVFNSVH---KPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFK 141 (654)
Q Consensus 65 ~~~~~~Li~~y~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 141 (654)
...+..+...|.+ .|++++|+..|+++. +.+..+|..+..+|.+.|++++|++.|+++.+.+ +.+..++..+..
T Consensus 25 a~~~~~~g~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFT--AKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHH--TTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 4566777777777 888888888888765 3466778888888888888888888888887753 234556777777
Q ss_pred HHhccCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCC------ChhhHHHHHHHHHHcCCH
Q 006246 142 ACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKS------DVICWNALIDGYLKCGDI 215 (654)
Q Consensus 142 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~ 215 (654)
++...|++++|...+. .+.. .|+. ....+..+...+....|...+++.... ........+..+....+.
T Consensus 102 ~~~~~g~~~~A~~~~~-~~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLS-VLSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHHcCCHHHHHHHHH-HHhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 7788888888888885 3322 2221 222334455555667777777765321 222334555666777777
Q ss_pred HHHHHHHHhcCCCCcc---hHHHHHHHHHh--------cCCHHHHHHHHHhcCCC---C-------HhHHHHHHHHHHhc
Q 006246 216 EGAKELFKSTKDKNTG---SYNAMISGFAR--------FGRFEEARKLFNEMNDK---D-------EITWSAIIDGYTKD 274 (654)
Q Consensus 216 ~~A~~~~~~m~~~~~~---~~~~li~~~~~--------~g~~~~A~~~~~~~~~~---~-------~~~~~~li~~~~~~ 274 (654)
+.+...+......+.. ....+...+.. .|++++|..+|+++.+. + ..+|..+...+...
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 177 HLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhc
Confidence 7777777666665444 34444443332 25889999999998763 2 23577777889999
Q ss_pred CChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHH
Q 006246 275 GYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVF 354 (654)
Q Consensus 275 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~ 354 (654)
|++++|+..|+++... .|+...+..+...+...|+++.|...+..+.+.. +.+..++..+...|...|++++|.+.|
T Consensus 257 ~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 257 NNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp TCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 9999999999999986 4557788888889999999999999999999876 456788999999999999999999999
Q ss_pred hhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCC
Q 006246 355 EDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDP 431 (654)
Q Consensus 355 ~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p 431 (654)
+++.. .+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|++++|...|+.+.+...-.+
T Consensus 334 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 412 (537)
T 3fp2_A 334 QKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE 412 (537)
T ss_dssp HHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence 98764 366889999999999999999999999998864 33566888899999999999999999999887532122
Q ss_pred Cc----chHHHHHHHHHHc----------CCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHhCChHHHHHHHHHHHhcC
Q 006246 432 EV----EHYGCIVDLLGRA----------GYLAEAEEVISSM-PM-EPNAAVWEALLGACRKHGEVEFGERLGKILLEME 495 (654)
Q Consensus 432 ~~----~~~~~li~~~~~~----------g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 495 (654)
+. ..+..+...|.+. |++++|...++++ .. +.+..+|..+...+...|++++|...+++++++.
T Consensus 413 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 413 KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 21 1244456778888 9999999999987 22 3468899999999999999999999999999999
Q ss_pred CCCC
Q 006246 496 PQNR 499 (654)
Q Consensus 496 p~~~ 499 (654)
|++.
T Consensus 493 ~~~~ 496 (537)
T 3fp2_A 493 RTMD 496 (537)
T ss_dssp --CH
T ss_pred CCcH
Confidence 9986
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=2.5e-21 Score=205.09 Aligned_cols=296 Identities=16% Similarity=0.100 Sum_probs=256.9
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHH
Q 006246 196 KSDVICWNALIDGYLKCGDIEGAKELFKSTKD---KNTGSYNAMISGFARFGRFEEARKLFNEMND---KDEITWSAIID 269 (654)
Q Consensus 196 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 269 (654)
+.++..|..+...|.+.|++++|+.+|+++.+ .+..++..+..+|.+.|++++|...|+++.+ .+...|..+..
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 102 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGH 102 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 34677899999999999999999999998875 4678899999999999999999999999874 36788999999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCc----chHHHH------------HHHHHhcCChhHHHHHHHHHHHcCCCCchhH
Q 006246 270 GYTKDGYYKEALEVFNEMQRDKIKPRK----FVLSCV------------LAACASLGALDQGIWIHDHVKRNSICVDAVL 333 (654)
Q Consensus 270 ~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 333 (654)
.|.+.|++++|++.|+++.+.. |+. ..+..+ ...+...|++++|...+..+.+.. +.+..+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 179 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAEL 179 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 9999999999999999998763 433 444444 344889999999999999999875 457888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHH-HHHHH------
Q 006246 334 GTALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRI-TFACV------ 403 (654)
Q Consensus 334 ~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~l------ 403 (654)
+..++.+|.+.|++++|.+.|+++.. .+..+|..++..|...|++++|+..|+++.+. .|+.. .+..+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHH
Confidence 99999999999999999999998864 47899999999999999999999999999875 44443 44443
Q ss_pred ------HHHHHccCCHHHHHHHHHHHHHHcCCCCC-----cchHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 006246 404 ------LSACAHAGMIDRGLQALTYMQQMYGIDPE-----VEHYGCIVDLLGRAGYLAEAEEVISSM-PMEP-NAAVWEA 470 (654)
Q Consensus 404 ------l~~~~~~g~~~~a~~~~~~~~~~~g~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ 470 (654)
...|.+.|++++|..+|+.+.+. .|+ ..+|..++.++.+.|++++|++.++++ ...| +..+|..
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 334 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 78899999999999999999874 455 447899999999999999999999987 3334 6899999
Q ss_pred HHHHHHHhCChHHHHHHHHHHHhcCCCCC
Q 006246 471 LLGACRKHGEVEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 471 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 499 (654)
++.+|...|++++|...++++++++|++.
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 363 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQEHNENDQ 363 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTSSSCH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCcchH
Confidence 99999999999999999999999999986
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=9.1e-21 Score=204.24 Aligned_cols=425 Identities=8% Similarity=-0.093 Sum_probs=314.3
Q ss_pred hhhcCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHhcccccCCChHHHHHHHhcCC---CCCcchHHHHHHHHHhCCCc
Q 006246 38 LNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVH---KPNVFVWNSVLRACLEHNEP 114 (654)
Q Consensus 38 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~ 114 (654)
..+...|+++.|...+..+++.. |++.++..+..+|.+ .|++++|...|+++. +.+..+|..+..+|.+.|++
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 89 (514)
T 2gw1_A 14 NQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVS--VGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKF 89 (514)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHH--HhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhH
Confidence 35667899999999999999986 689999999999999 999999999999876 34567899999999999999
Q ss_pred hHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhhHHHH---HHHHHhcCCHHHHHHHH
Q 006246 115 WRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSG---IQMYACFGCVNKARQIL 191 (654)
Q Consensus 115 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l---i~~y~~~g~~~~A~~~~ 191 (654)
++|+..|+++...+ +++......++..+........+.+.+..+...+..++......- ............+...+
T Consensus 90 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (514)
T 2gw1_A 90 ADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFF 168 (514)
T ss_dssp HHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHH
Confidence 99999999999875 345556666665555444444444444333222211111111100 00011111111122222
Q ss_pred hcCC----------CCChhhHHHHHHHHHH---cCCHHHHHHHHHhcCC-----C------------CcchHHHHHHHHH
Q 006246 192 DDGS----------KSDVICWNALIDGYLK---CGDIEGAKELFKSTKD-----K------------NTGSYNAMISGFA 241 (654)
Q Consensus 192 ~~~~----------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~------------~~~~~~~li~~~~ 241 (654)
.... +.+...+......+.. .|++++|+..|+++.+ . +..++..+...+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (514)
T 2gw1_A 169 GIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKF 248 (514)
T ss_dssp TTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHH
Confidence 2211 1234455555555554 8999999999988765 1 3457888899999
Q ss_pred hcCCHHHHHHHHHhcCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHH
Q 006246 242 RFGRFEEARKLFNEMND--KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIH 319 (654)
Q Consensus 242 ~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 319 (654)
..|++++|...|+++.+ |+...|..+...|...|++++|+..|+++.... +.+...+..+...+...|++++|...+
T Consensus 249 ~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 327 (514)
T 2gw1_A 249 LKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDF 327 (514)
T ss_dssp HSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred HCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999998753 447788999999999999999999999998764 446678888889999999999999999
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCC-C
Q 006246 320 DHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMR-P 395 (654)
Q Consensus 320 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p 395 (654)
..+.+.. +.+..++..+...|.+.|++++|...|+++.. .+...|..+...|...|++++|+..|+++.+.... |
T Consensus 328 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 406 (514)
T 2gw1_A 328 DKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLD 406 (514)
T ss_dssp HHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 9999875 34677888899999999999999999998764 36778999999999999999999999999874211 1
Q ss_pred C----HHHHHHHHHHHHc---cCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HH
Q 006246 396 D----RITFACVLSACAH---AGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-PMEPN-AA 466 (654)
Q Consensus 396 ~----~~t~~~ll~~~~~---~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~ 466 (654)
+ ...+..+...+.. .|++++|...++.+.+. .+.+...+..+..+|.+.|++++|.+.+++. ...|+ ..
T Consensus 407 ~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 484 (514)
T 2gw1_A 407 GIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL--DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEE 484 (514)
T ss_dssp SCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHH
T ss_pred hHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHH
Confidence 1 3378889999999 99999999999999874 2345677889999999999999999999987 34454 44
Q ss_pred HHHHH
Q 006246 467 VWEAL 471 (654)
Q Consensus 467 ~~~~l 471 (654)
.+..+
T Consensus 485 ~~~~~ 489 (514)
T 2gw1_A 485 KLQAI 489 (514)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.84 E-value=5.4e-19 Score=191.60 Aligned_cols=410 Identities=10% Similarity=-0.029 Sum_probs=314.5
Q ss_pred hhhcCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHhcccccCCChHHHHHHHhcCC---CCCcchHHHHHHHHHhCCCc
Q 006246 38 LNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVH---KPNVFVWNSVLRACLEHNEP 114 (654)
Q Consensus 38 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~ 114 (654)
..+...|+++.|...+..+++.. +.++..+..+..+|.+ .|++++|++.|+++. +.+..+|..+...+...|++
T Consensus 33 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 109 (537)
T 3fp2_A 33 NHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYIS--TGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNF 109 (537)
T ss_dssp HHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCH
Confidence 35667899999999999999986 3478899999999999 999999999999876 34677899999999999999
Q ss_pred hHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhC--CCCChhhHHHHHHHHHhcCCHHHHHHHHh
Q 006246 115 WRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNG--LCGDVHVKSSGIQMYACFGCVNKARQILD 192 (654)
Q Consensus 115 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 192 (654)
++|+..|+.+ .. .|+... ..+..+...+....|...+..++... ..+........+..|....+.+.+...+.
T Consensus 110 ~~A~~~~~~~-~~--~~~~~~--~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (537)
T 3fp2_A 110 TDAMFDLSVL-SL--NGDFDG--ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVN 184 (537)
T ss_dssp HHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSC
T ss_pred HHHHHHHHHH-hc--CCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHh
Confidence 9999999744 32 233221 11223334444567888888776531 11222233455666777888888888888
Q ss_pred cCCCCChh---hHHHHHHHHHH--------cCCHHHHHHHHHhcCCCCc----------chHHHHHHHHHhcCCHHHHHH
Q 006246 193 DGSKSDVI---CWNALIDGYLK--------CGDIEGAKELFKSTKDKNT----------GSYNAMISGFARFGRFEEARK 251 (654)
Q Consensus 193 ~~~~~~~~---~~~~li~~~~~--------~g~~~~A~~~~~~m~~~~~----------~~~~~li~~~~~~g~~~~A~~ 251 (654)
.....+.. .+..+...+.. .|++++|+.+|+++.+.++ .++..+...+...|++++|..
T Consensus 185 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~ 264 (537)
T 3fp2_A 185 TSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQV 264 (537)
T ss_dssp CCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 87655544 44444443332 2588999999999877332 256777788899999999999
Q ss_pred HHHhcCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 006246 252 LFNEMND--KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICV 329 (654)
Q Consensus 252 ~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 329 (654)
.|+++.+ |+...|..+...|...|++++|++.|+++.+.. +.+..++..+...+...|++++|...+..+.+.. +.
T Consensus 265 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~ 342 (537)
T 3fp2_A 265 LLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PE 342 (537)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CC
Confidence 9999864 567789999999999999999999999998864 3456788888999999999999999999999876 34
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCC-----CCHHHHH
Q 006246 330 DAVLGTALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMR-----PDRITFA 401 (654)
Q Consensus 330 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-----p~~~t~~ 401 (654)
+...+..+...|.+.|++++|.+.|+++.. .+...|..+...|...|++++|++.|+++.+.... .....+.
T Consensus 343 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 422 (537)
T 3fp2_A 343 NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLI 422 (537)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHH
Confidence 567888999999999999999999998764 36778999999999999999999999998764311 1122244
Q ss_pred HHHHHHHcc----------CCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC
Q 006246 402 CVLSACAHA----------GMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459 (654)
Q Consensus 402 ~ll~~~~~~----------g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (654)
.....+... |++++|...|+++.+. .+.+...+..+..+|.+.|++++|.+.|++.
T Consensus 423 ~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 423 GKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPRSEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp HHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 455667777 9999999999999884 2345678899999999999999999999987
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.83 E-value=7.6e-18 Score=171.96 Aligned_cols=295 Identities=14% Similarity=0.067 Sum_probs=217.8
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHh
Q 006246 200 ICWNALIDGYLKCGDIEGAKELFKSTKD---KNTGSYNAMISGFARFGRFEEARKLFNEMND---KDEITWSAIIDGYTK 273 (654)
Q Consensus 200 ~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 273 (654)
..|..+...+.+.|++++|+..|+++.+ .+..++..+...+...|++++|...|+++.+ .+...|..+...|..
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLK 83 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 3455555555666666666666665543 2345566666666666666666666666543 245667777777777
Q ss_pred cCChHHHHHHHHHHHhCCCC--CCcchHHHH------------HHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHH
Q 006246 274 DGYYKEALEVFNEMQRDKIK--PRKFVLSCV------------LAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVD 339 (654)
Q Consensus 274 ~g~~~~A~~~~~~m~~~g~~--p~~~t~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 339 (654)
.|++++|+..|+++.+.... .+...+..+ ...+...|++++|.+.+..+.+.. +.+..++..+..
T Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 162 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAE 162 (359)
T ss_dssp HTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 77777777777777654210 122222222 466788889999999998888765 456778888999
Q ss_pred HHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHH------------HHH
Q 006246 340 MYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFA------------CVL 404 (654)
Q Consensus 340 ~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~------------~ll 404 (654)
.|.+.|++++|...|+++.. .+..+|..+...|...|++++|...|++..+.. +.+...+. .+.
T Consensus 163 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a 241 (359)
T 3ieg_A 163 CFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESA 241 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988765 367889999999999999999999999998753 22333332 235
Q ss_pred HHHHccCCHHHHHHHHHHHHHHcCCCCCc-----chHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 006246 405 SACAHAGMIDRGLQALTYMQQMYGIDPEV-----EHYGCIVDLLGRAGYLAEAEEVISSM-PMEP-NAAVWEALLGACRK 477 (654)
Q Consensus 405 ~~~~~~g~~~~a~~~~~~~~~~~g~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 477 (654)
..+.+.|++++|...++.+.+. .|+. ..+..+...+...|++++|.+.+++. ...| +..+|..+...+..
T Consensus 242 ~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (359)
T 3ieg_A 242 EELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLI 318 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 6688999999999999999875 3442 23556788999999999999999987 3334 78899999999999
Q ss_pred hCChHHHHHHHHHHHhcCCCCC
Q 006246 478 HGEVEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 478 ~g~~~~a~~~~~~~~~~~p~~~ 499 (654)
.|++++|...++++++++|++.
T Consensus 319 ~g~~~~A~~~~~~a~~~~p~~~ 340 (359)
T 3ieg_A 319 EEMYDEAIQDYEAAQEHNENDQ 340 (359)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCH
T ss_pred cCCHHHHHHHHHHHHhcCCCCh
Confidence 9999999999999999999986
No 14
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.82 E-value=3.9e-18 Score=172.51 Aligned_cols=366 Identities=14% Similarity=0.133 Sum_probs=181.9
Q ss_pred CCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHH
Q 006246 80 FSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHV 159 (654)
Q Consensus 80 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 159 (654)
.|++++|.+.++++..|+ +|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|...+...
T Consensus 16 ~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~a 87 (449)
T 1b89_A 16 IGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMA 87 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 888999999999997765 8999999999999999999999753 57889999999999999999999988877
Q ss_pred HHhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHH
Q 006246 160 VKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISG 239 (654)
Q Consensus 160 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~ 239 (654)
.+. .+++.+.+.++.+|.++|+++++.++++. |+..+|+.+...|...|.+++|...|..+ ..|..++.+
T Consensus 88 rk~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~~ 157 (449)
T 1b89_A 88 RKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLAST 157 (449)
T ss_dssp -----------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHHHHHHH
T ss_pred HHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHHH
Confidence 774 45678899999999999999999998874 67779999999999999999999999988 589999999
Q ss_pred HHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHH
Q 006246 240 FARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIH 319 (654)
Q Consensus 240 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 319 (654)
+.+.|++++|.+.+.++ .++.+|..++.+|+..|+++.|...... +..++.-...++..|.+.|.++++..++
T Consensus 158 L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lL 230 (449)
T 1b89_A 158 LVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITML 230 (449)
T ss_dssp HHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999 3899999999999999999999655443 2233334557888999999999999999
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHHc--CCHHHHHHHHhhcCC--------CCHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q 006246 320 DHVKRNSICVDAVLGTALVDMYAKC--GRLDMAWKVFEDMKM--------KEVFTWNAMIGGLAMHGRADDAIELFFKMQ 389 (654)
Q Consensus 320 ~~~~~~~~~~~~~~~~~li~~y~~~--g~~~~A~~~~~~m~~--------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 389 (654)
+...... +-...+|+-|.-+|+|- +++.+.++.|..-.. .+...|..+.-.|.+.++++.|... |.
T Consensus 231 e~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t---m~ 306 (449)
T 1b89_A 231 EAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MM 306 (449)
T ss_dssp HHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH---HH
T ss_pred HHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH---HH
Confidence 9988765 55677888888888864 467777777765443 2456799999999999999999874 44
Q ss_pred hc-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhCC--------
Q 006246 390 RE-KMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMP-------- 460 (654)
Q Consensus 390 ~~-g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-------- 460 (654)
+. ...-+...|-- ...+..+.+--.+...-.... .| ...+.|+.++...=+...+..+|++.+
T Consensus 307 ~h~~~a~~~~~f~~---~~~kv~n~elyYkai~fyl~~---~p--~~l~~ll~~l~~~ld~~r~v~~~~~~~~l~l~~~y 378 (449)
T 1b89_A 307 NHPTDAWKEGQFKD---IITKVANVELYYRAIQFYLEF---KP--LLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPY 378 (449)
T ss_dssp HSTTTTCCHHHHHH---HHHHCSSTHHHHHHHHHHHHH---CG--GGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHH
T ss_pred hCChhhhhhHHHHH---HHhchhHHHHHHHHHHHHHhc---CH--HHHHHHHHHHHhccCcHHHHHHHHHcCCcHHHHHH
Confidence 42 11223333333 334455544433333333322 23 335666666666666666666666653
Q ss_pred -----CCCCHHHHHHHHHHHHHhCChH
Q 006246 461 -----MEPNAAVWEALLGACRKHGEVE 482 (654)
Q Consensus 461 -----~~p~~~~~~~ll~~~~~~g~~~ 482 (654)
...+..+-.++-..|....|++
T Consensus 379 l~~v~~~n~~~vnealn~l~ieeed~~ 405 (449)
T 1b89_A 379 LRSVQNHNNKSVNESLNNLFITEEDYQ 405 (449)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhhhhHH
Confidence 2233444455555555555554
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.78 E-value=2e-16 Score=161.40 Aligned_cols=317 Identities=11% Similarity=0.013 Sum_probs=204.5
Q ss_pred cHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhcC---CCCChhhHHHHHHHHHH
Q 006246 135 TYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDG---SKSDVICWNALIDGYLK 211 (654)
Q Consensus 135 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~ 211 (654)
.+..+...+...|++++|...+..+++.. +.+...+..+...|...|++++|...|++. .+.+...|..+...|.+
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLK 83 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 34445555666666666766666666654 334555666666666666666666666553 33344555566666666
Q ss_pred cCCHHHHHHHHHhcCCCCc------chHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHH
Q 006246 212 CGDIEGAKELFKSTKDKNT------GSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFN 285 (654)
Q Consensus 212 ~g~~~~A~~~~~~m~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 285 (654)
.|++++|...|++..+.++ ..+..+...+ . ...+..+...+...|++++|++.|+
T Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~------------~~~~~~~a~~~~~~~~~~~A~~~~~ 144 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKAD-------E------------MQRLRSQALDAFDGADYTAAITFLD 144 (359)
T ss_dssp HTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH-------H------------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHH-------H------------HHHHHHHHHHHHHccCHHHHHHHHH
Confidence 6666666666655544222 1111111000 0 0012223456677777777777777
Q ss_pred HHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCH
Q 006246 286 EMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM---KEV 362 (654)
Q Consensus 286 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~ 362 (654)
++.+.. +.+...+..+...+...|++++|...+..+.+.. +.+..++..+...|...|++++|...|++... .+.
T Consensus 145 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 222 (359)
T 3ieg_A 145 KILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHK 222 (359)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccch
Confidence 776653 3345566666667777777777777777776654 34566677777777777777777777776653 233
Q ss_pred HHHH------------HHHHHHHHcCChhHHHHHHHHHhhcCCCCCHH-----HHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006246 363 FTWN------------AMIGGLAMHGRADDAIELFFKMQREKMRPDRI-----TFACVLSACAHAGMIDRGLQALTYMQQ 425 (654)
Q Consensus 363 ~~~~------------~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-----t~~~ll~~~~~~g~~~~a~~~~~~~~~ 425 (654)
..|. .+...+.+.|++++|+..|+++.+.. |+.. .+..+...+...|++++|...++...+
T Consensus 223 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 300 (359)
T 3ieg_A 223 RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQ 300 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3332 33667889999999999999998864 3322 344567788999999999999999987
Q ss_pred HcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHH
Q 006246 426 MYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-PMEPN-AAVWEALLGACRK 477 (654)
Q Consensus 426 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~ 477 (654)
. .+.+...+..+..+|.+.|++++|.+.++++ ...|+ ...+..+..+...
T Consensus 301 ~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 301 M--EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred h--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 4 2336778899999999999999999999987 45564 6667766665544
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.77 E-value=3.1e-15 Score=160.05 Aligned_cols=336 Identities=8% Similarity=-0.055 Sum_probs=248.7
Q ss_pred cCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHh----cCCHHHHHHHHhcC-CCCChhhHHHHHHHHHH----cCCHH
Q 006246 146 TEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYAC----FGCVNKARQILDDG-SKSDVICWNALIDGYLK----CGDIE 216 (654)
Q Consensus 146 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~-~~~~~~~~~~li~~~~~----~g~~~ 216 (654)
.++.++|...+....+.| +...+..|..+|.. .++.++|.+.|++. ...++..+..|...|.. .++++
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHH
Confidence 455555555555555532 34445555555555 55666666666553 22345555556666666 66777
Q ss_pred HHHHHHHhcCC-CCcchHHHHHHHHHh----cCCHHHHHHHHHhcCC-CCHhHHHHHHHHHHh----cCChHHHHHHHHH
Q 006246 217 GAKELFKSTKD-KNTGSYNAMISGFAR----FGRFEEARKLFNEMND-KDEITWSAIIDGYTK----DGYYKEALEVFNE 286 (654)
Q Consensus 217 ~A~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~ 286 (654)
+|+..|++..+ .+...+..|...|.. .++.++|.+.|++..+ .+...+..+...|.. .+++++|++.|++
T Consensus 133 ~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~ 212 (490)
T 2xm6_A 133 ESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRK 212 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHH
Confidence 77777776654 345566777777766 6778888888877654 367778888888887 7888888888888
Q ss_pred HHhCCCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHH----cCCHHHHHHHHhhcC
Q 006246 287 MQRDKIKPRKFVLSCVLAACAS----LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAK----CGRLDMAWKVFEDMK 358 (654)
Q Consensus 287 m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~m~ 358 (654)
..+.| +...+..+...+.. .++.++|...+....+.+ +...+..|..+|.. .++.++|...|++..
T Consensus 213 a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~ 286 (490)
T 2xm6_A 213 SATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSA 286 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
Confidence 88765 44566666666665 778888998888888765 45566778888887 889999999998877
Q ss_pred CC-CHHHHHHHHHHHHHc-----CChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHHHcCC
Q 006246 359 MK-EVFTWNAMIGGLAMH-----GRADDAIELFFKMQREKMRPDRITFACVLSACAHAG---MIDRGLQALTYMQQMYGI 429 (654)
Q Consensus 359 ~~-~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g---~~~~a~~~~~~~~~~~g~ 429 (654)
+. +...+..+...|... ++.++|+.+|++..+.| +...+..+...+...| +.++|.++|++..+.
T Consensus 287 ~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--- 360 (490)
T 2xm6_A 287 EQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--- 360 (490)
T ss_dssp TTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT---
T ss_pred HcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC---
Confidence 54 677888888888887 89999999999998875 4556667777777656 788999999999873
Q ss_pred CCCcchHHHHHHHHHH----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----hCChHHHHHHHHHHHhcCCC
Q 006246 430 DPEVEHYGCIVDLLGR----AGYLAEAEEVISSMPMEPNAAVWEALLGACRK----HGEVEFGERLGKILLEMEPQ 497 (654)
Q Consensus 430 ~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~ 497 (654)
.+...+..|..+|.. .+++++|.+.|++.-...++..+..|...|.. .++.++|...|+++++.+|+
T Consensus 361 -~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 361 -GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp -TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred -CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 456788889999988 89999999999987333468888899999988 89999999999999998865
No 17
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.77 E-value=1.2e-15 Score=164.94 Aligned_cols=418 Identities=10% Similarity=0.072 Sum_probs=290.7
Q ss_pred HHHHHHhCCCCchhHHHHHHHhcccccCCChHHHHHHHhcCCC--C-CcchHHHHHHHHHhCCCchHHHHHHHHhHhCCC
Q 006246 53 HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHK--P-NVFVWNSVLRACLEHNEPWRVISLYSEMVGVDS 129 (654)
Q Consensus 53 ~~~~~~~g~~~~~~~~~~Li~~y~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 129 (654)
++..++.. +.+...|..++.. .+ .|+++.|+.+|+++.. | +...|..++..+.+.|++++|..+|++....
T Consensus 2 le~al~~~-P~~~~~w~~l~~~-~~--~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~-- 75 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIRE-AQ--NQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK-- 75 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHH-HH--SSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--
T ss_pred hhhHhhhC-CCCHHHHHHHHHH-HH--hCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--
Confidence 34445544 3367789999984 67 8999999999999863 3 5567999999999999999999999999875
Q ss_pred CCCcccHHHHHHHH-hccCCcHHHHH----HHHHHHHh-CCCC-ChhhHHHHHHHHHh---------cCCHHHHHHHHhc
Q 006246 130 KPNKFTYPTVFKAC-SITEADKEGVQ----VHAHVVKN-GLCG-DVHVKSSGIQMYAC---------FGCVNKARQILDD 193 (654)
Q Consensus 130 ~p~~~t~~~ll~~~-~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~li~~y~~---------~g~~~~A~~~~~~ 193 (654)
.|+...|...+... ...|+.+.|++ +++..++. |..+ +...|...+....+ .|+++.|+.+|++
T Consensus 76 ~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~ 155 (530)
T 2ooe_A 76 VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQR 155 (530)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHH
Confidence 46766666555432 34577776665 77776654 5544 45677777776654 6778888888887
Q ss_pred CCC-CC---hhhHHHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHh-------cC-----
Q 006246 194 GSK-SD---VICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNE-------MN----- 257 (654)
Q Consensus 194 ~~~-~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-------~~----- 257 (654)
... |+ ...|..........|. ..+..++. .+.++++.|..++.. +.
T Consensus 156 al~~P~~~~~~~~~~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~ 217 (530)
T 2ooe_A 156 GCVNPMINIEQLWRDYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPS 217 (530)
T ss_dssp HTTSCCTTHHHHHHHHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCC
T ss_pred HHhchhhhHHHHHHHHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 533 21 1223222211101110 11111111 022345555554443 11
Q ss_pred -CCC--------HhHHHHHHHHHHhc----CCh----HHHHHHHHHHHhCCCCCCcchHHHHHHHHHh-------cCChh
Q 006246 258 -DKD--------EITWSAIIDGYTKD----GYY----KEALEVFNEMQRDKIKPRKFVLSCVLAACAS-------LGALD 313 (654)
Q Consensus 258 -~~~--------~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-------~g~~~ 313 (654)
.|+ ...|...+...... ++. ++|..+|++..... +-+...|......+.+ .|+++
T Consensus 218 ~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~ 296 (530)
T 2ooe_A 218 VPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMN 296 (530)
T ss_dssp CCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCH
T ss_pred CCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchh
Confidence 111 24566655443332 222 47788899888752 3355566666666664 68887
Q ss_pred -------HHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC--C-CH-HHHHHHHHHHHHcCChhHHH
Q 006246 314 -------QGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM--K-EV-FTWNAMIGGLAMHGRADDAI 382 (654)
Q Consensus 314 -------~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~-~~~~~li~~~~~~g~~~~A~ 382 (654)
+|..+++.+++.-.+.+..++..++..+.+.|++++|.++|+++.. + +. ..|...+..+.+.|+.++|.
T Consensus 297 ~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~ 376 (530)
T 2ooe_A 297 NAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGR 376 (530)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHH
Confidence 8999999998733355788999999999999999999999998764 3 33 58999999999999999999
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHH-HHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC--
Q 006246 383 ELFFKMQREKMRPDRITFACVLSA-CAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-- 459 (654)
Q Consensus 383 ~l~~~m~~~g~~p~~~t~~~ll~~-~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-- 459 (654)
++|++..+.. +.+...|...... +...|+.++|..+|+...+.. +.+...|..+++.+.+.|+.++|..+|++.
T Consensus 377 ~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~ 453 (530)
T 2ooe_A 377 MIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 453 (530)
T ss_dssp HHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHh
Confidence 9999998853 2233333332222 336899999999999998853 235678999999999999999999999987
Q ss_pred --CCCCC--HHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Q 006246 460 --PMEPN--AAVWEALLGACRKHGEVEFGERLGKILLEMEPQN 498 (654)
Q Consensus 460 --~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 498 (654)
+..|+ ...|...+.....+|+.+.+..+.+++.+..|++
T Consensus 454 ~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 454 SGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 496 (530)
T ss_dssp SCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchh
Confidence 23332 5689999999999999999999999999998854
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.76 E-value=3.2e-16 Score=157.99 Aligned_cols=259 Identities=12% Similarity=0.032 Sum_probs=126.4
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHH
Q 006246 197 SDVICWNALIDGYLKCGDIEGAKELFKSTKD---KNTGSYNAMISGFARFGRFEEARKLFNEMND---KDEITWSAIIDG 270 (654)
Q Consensus 197 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 270 (654)
.+...+..+...+...|++++|+.+|+++.+ .+...+..++..+...|++++|...|+++.+ .+...|..+...
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 99 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCY 99 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 3455556666666666666666666666543 2333444555555556666666665555542 234455555555
Q ss_pred HHhcC-ChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHH
Q 006246 271 YTKDG-YYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDM 349 (654)
Q Consensus 271 ~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 349 (654)
+...| ++++|.+.|++..... +.+...+..+...+...|++++|...+..+.+... .+...+..+...|...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhHHH
Confidence 55555 5566666665555432 22334444555555555555555555555554431 223333444555555555555
Q ss_pred HHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcC--------CCCCHHHHHHHHHHHHccCCHHHHHH
Q 006246 350 AWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREK--------MRPDRITFACVLSACAHAGMIDRGLQ 418 (654)
Q Consensus 350 A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--------~~p~~~t~~~ll~~~~~~g~~~~a~~ 418 (654)
|.+.|+++.. .+...|..+...|...|++++|+..|+++.+.. .+.+..++..+...+...|++++|..
T Consensus 178 A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (330)
T 3hym_B 178 AERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257 (330)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 5555554433 133444445555555555555555555444321 01122344444444444444444444
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC
Q 006246 419 ALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459 (654)
Q Consensus 419 ~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (654)
.++++.+. .+.+...+..+...|.+.|++++|.+.+++.
T Consensus 258 ~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 296 (330)
T 3hym_B 258 YHRQALVL--IPQNASTYSAIGYIHSLMGNFENAVDYFHTA 296 (330)
T ss_dssp HHHHHHHH--STTCSHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred HHHHHHhh--CccchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 44444432 1122334444444444444444444444443
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.76 E-value=7.7e-16 Score=155.14 Aligned_cols=269 Identities=10% Similarity=-0.047 Sum_probs=221.5
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHH
Q 006246 228 KNTGSYNAMISGFARFGRFEEARKLFNEMND---KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLA 304 (654)
Q Consensus 228 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 304 (654)
.+...+..+...+...|++++|.++|+++.+ .+...+..++..+...|++++|+.+++++.+.. +.+...+..+..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 5677788888889999999999999998764 245667778888899999999999999988763 335667788888
Q ss_pred HHHhcC-ChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhH
Q 006246 305 ACASLG-ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADD 380 (654)
Q Consensus 305 ~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~ 380 (654)
.+...| ++++|.+.+..+.+.. +.+...+..+...|...|++++|.+.|+++.. .+...|..+...|...|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHH
Confidence 888999 8999999999988765 34577788899999999999999999988764 345778888899999999999
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcC-------CCCCcchHHHHHHHHHHcCCHHHHH
Q 006246 381 AIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYG-------IDPEVEHYGCIVDLLGRAGYLAEAE 453 (654)
Q Consensus 381 A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g-------~~p~~~~~~~li~~~~~~g~~~~A~ 453 (654)
|++.|+++.+.. +.+...+..+...+...|++++|...++.+.+... .+.....+..+..+|.+.|++++|.
T Consensus 178 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 178 AERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 999999998864 33567888888899999999999999998887421 1334568889999999999999999
Q ss_pred HHHHhC-C-CCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCC
Q 006246 454 EVISSM-P-MEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 454 ~~~~~m-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 499 (654)
+.+++. . .+.+..+|..+...+...|++++|...++++++++|++.
T Consensus 257 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 304 (330)
T 3hym_B 257 DYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDT 304 (330)
T ss_dssp HHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCH
T ss_pred HHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCch
Confidence 999877 2 233678888999999999999999999999999999875
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.75 E-value=3.3e-15 Score=159.87 Aligned_cols=334 Identities=10% Similarity=-0.007 Sum_probs=192.4
Q ss_pred cCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHh----cCCHHHHHHHHhcC-CCCChhhHHHHHHHHHH----cCCHH
Q 006246 146 TEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYAC----FGCVNKARQILDDG-SKSDVICWNALIDGYLK----CGDIE 216 (654)
Q Consensus 146 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~-~~~~~~~~~~li~~~~~----~g~~~ 216 (654)
.++.++|...+....+.| ++..+..|..+|.. .+++++|.+.|++. ...++..+..|...|.. .++.+
T Consensus 92 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~ 168 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYV 168 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHH
Confidence 344444444444444332 23333344444444 44444444444442 12234444444444444 45555
Q ss_pred HHHHHHHhcCC-CCcchHHHHHHHHHh----cCCHHHHHHHHHhcCCC-CHhHHHHHHHHHHh----cCChHHHHHHHHH
Q 006246 217 GAKELFKSTKD-KNTGSYNAMISGFAR----FGRFEEARKLFNEMNDK-DEITWSAIIDGYTK----DGYYKEALEVFNE 286 (654)
Q Consensus 217 ~A~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~ 286 (654)
+|+..|++..+ .+...+..|...|.. .++.++|.+.|++..+. +...+..+...|.. .+++++|+++|++
T Consensus 169 ~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~ 248 (490)
T 2xm6_A 169 MAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQ 248 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 55555555433 344455555555555 56666666666655432 45556666666664 5666777777766
Q ss_pred HHhCCCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHc-----CCHHHHHHHHhhc
Q 006246 287 MQRDKIKPRKFVLSCVLAACAS----LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKC-----GRLDMAWKVFEDM 357 (654)
Q Consensus 287 m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~-----g~~~~A~~~~~~m 357 (654)
..+.| +...+..+...+.. .++.++|...+..+.+.+ +...+..|..+|... ++.++|...|++.
T Consensus 249 a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a 322 (490)
T 2xm6_A 249 SAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKS 322 (490)
T ss_dssp HHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH
Confidence 66543 23344444445555 566777777777766554 344555666777666 6777777777766
Q ss_pred CCC-CHHHHHHHHHHHHHcC---ChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHHcCC
Q 006246 358 KMK-EVFTWNAMIGGLAMHG---RADDAIELFFKMQREKMRPDRITFACVLSACAH----AGMIDRGLQALTYMQQMYGI 429 (654)
Q Consensus 358 ~~~-~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~g~ 429 (654)
.+. +...+..+...|...| +.++|+++|++..+.| +...+..+...|.. .++.++|..+|++..+. +
T Consensus 323 ~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~-~- 397 (490)
T 2xm6_A 323 AEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ-G- 397 (490)
T ss_dssp HHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T-
T ss_pred HhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC-C-
Confidence 543 5566777777776655 6777888888777754 55666667767766 67788888888877763 3
Q ss_pred CCCcchHHHHHHHHHH----cCCHHHHHHHHHhC-CCC---C-CHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Q 006246 430 DPEVEHYGCIVDLLGR----AGYLAEAEEVISSM-PME---P-NAAVWEALLGACRKHGEVEFGERLGKILLEMEPQ 497 (654)
Q Consensus 430 ~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m-~~~---p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 497 (654)
+...+..|..+|.+ .+++++|.+.|++. ... | +...+..+...+. .+.+.+.+.+++.++..|+
T Consensus 398 --~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~--~~~~~a~~~a~~~~~~~~~ 470 (490)
T 2xm6_A 398 --LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTA--KQLQQAELLSQQYIEKYAP 470 (490)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCH--HHHHHHHHHHHHHHHHHCH
T ss_pred --CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCH--hHHHHHHHHHHHHHHHHHH
Confidence 45567777777777 77888888888776 111 2 3344444433333 2345555556666554443
No 21
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=4.2e-17 Score=164.99 Aligned_cols=284 Identities=11% Similarity=0.054 Sum_probs=117.1
Q ss_pred ccCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHh
Q 006246 145 ITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKS 224 (654)
Q Consensus 145 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 224 (654)
+.|++++|.+.++++ +++.+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|++.++.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 345566666666655 22236666777777777777777776553 4555777777777777777777776655
Q ss_pred cCC--CCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHH
Q 006246 225 TKD--KNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCV 302 (654)
Q Consensus 225 m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 302 (654)
..+ +++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|..+|..+ ..|..+
T Consensus 87 ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~L 154 (449)
T 1b89_A 87 ARKKARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRL 154 (449)
T ss_dssp ----------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT---------TCHHHH
T ss_pred HHHhCccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHH
Confidence 543 345667777777777777777776664 356667777777777777777777777765 367777
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChhHHH
Q 006246 303 LAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAI 382 (654)
Q Consensus 303 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~ 382 (654)
..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|++++|+
T Consensus 155 A~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai 227 (449)
T 1b89_A 155 ASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELI 227 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHH
Confidence 77777777777777777766 256777777778888888888876666544 33333445777788888888888
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHHcCCCC------CcchHHHHHHHHHHcCCHHHHHH
Q 006246 383 ELFFKMQREKMRPDRITFACVLSACAHA--GMIDRGLQALTYMQQMYGIDP------EVEHYGCIVDLLGRAGYLAEAEE 454 (654)
Q Consensus 383 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~--g~~~~a~~~~~~~~~~~g~~p------~~~~~~~li~~~~~~g~~~~A~~ 454 (654)
.+++..+... +-....|+-+.-++++- +++.+.++.|. +...++| +...|..++..|...|+++.|..
T Consensus 228 ~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 228 TMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 8888776543 22334555555555443 33444444333 2223444 46778888889999999998887
Q ss_pred HHHhC
Q 006246 455 VISSM 459 (654)
Q Consensus 455 ~~~~m 459 (654)
..-+-
T Consensus 304 tm~~h 308 (449)
T 1b89_A 304 TMMNH 308 (449)
T ss_dssp HHHHS
T ss_pred HHHhC
Confidence 66554
No 22
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.75 E-value=3.8e-14 Score=159.24 Aligned_cols=397 Identities=9% Similarity=0.034 Sum_probs=283.2
Q ss_pred hhhcCCCChHHHHHHHHHHHHhC--CCCchhHHHHHHHhcccccCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCCch
Q 006246 38 LNTKCHTSWQHLKQAHAVILKSG--HFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPW 115 (654)
Q Consensus 38 ~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~Li~~y~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 115 (654)
+++...|.+.++.++++.++-.+ +..+...-+.|+.+..+...++..+...-++ .-+ ...+...+...|.++
T Consensus 993 Kaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd---~~d---~~eIA~Iai~lglyE 1066 (1630)
T 1xi4_A 993 KAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLD---NYD---APDIANIAISNELFE 1066 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhh---hcc---HHHHHHHHHhCCCHH
Confidence 56777888888998888887332 1234566677776666622333333333333 222 444667788899999
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCC
Q 006246 116 RVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGS 195 (654)
Q Consensus 116 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 195 (654)
+|..+|++... .....+.++. ..+++++|.++.++. .++.+|..+..++.+.|++++|.+.|.+.
T Consensus 1067 EAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA- 1131 (1630)
T 1xi4_A 1067 EAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA- 1131 (1630)
T ss_pred HHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-
Confidence 99999988521 1112223322 567788888877754 44678889999999999999999999775
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC--CCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHh
Q 006246 196 KSDVICWNALIDGYLKCGDIEGAKELFKSTKD--KNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTK 273 (654)
Q Consensus 196 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 273 (654)
.|...|..++..+.+.|++++|++.|....+ +++...+.++.+|++.+++++..... ..++...|..+...|..
T Consensus 1132 -dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~ 1207 (1630)
T 1xi4_A 1132 -DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYD 1207 (1630)
T ss_pred -CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHh
Confidence 6777888899999999999999999977654 44445556999999999988644443 45566777788899999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHH
Q 006246 274 DGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKV 353 (654)
Q Consensus 274 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 353 (654)
.|++++|..+|... ..|..+...+.+.|+++.|.+.+++. .+..+|..+..++...|++..|...
T Consensus 1208 eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~c 1272 (1630)
T 1xi4_A 1208 EKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMC 1272 (1630)
T ss_pred cCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHH
Confidence 99999999999884 37888999999999999999998876 3567888888888889999999887
Q ss_pred HhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHH--ccCCHHHHHHHHHHHHHHcCCCC
Q 006246 354 FEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACA--HAGMIDRGLQALTYMQQMYGIDP 431 (654)
Q Consensus 354 ~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~--~~g~~~~a~~~~~~~~~~~g~~p 431 (654)
... ...+...+..++..|.+.|.+++|+.+++..+... +-....|.-+...++ +-+++.++.++|..- -.++|
T Consensus 1273 gl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~r---ini~k 1347 (1630)
T 1xi4_A 1273 GLH-IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR---VNIPK 1347 (1630)
T ss_pred HHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHh---cccch
Confidence 765 33455667788999999999999999998877543 222234544444444 445555666665532 23443
Q ss_pred ------CcchHHHHHHHHHHcCCHHHHHHHHHhC--------------CCCCCHHHHHHHHHHHHHhC
Q 006246 432 ------EVEHYGCIVDLLGRAGYLAEAEEVISSM--------------PMEPNAAVWEALLGACRKHG 479 (654)
Q Consensus 432 ------~~~~~~~li~~~~~~g~~~~A~~~~~~m--------------~~~p~~~~~~~ll~~~~~~g 479 (654)
+...|..++..|.+.|+++.|...+-+- ....|+..|.-.+.-|..+.
T Consensus 1348 ~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1348 VLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred HhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhC
Confidence 4667999999999999999998433222 12346777777777776555
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.74 E-value=1.5e-16 Score=163.19 Aligned_cols=291 Identities=13% Similarity=0.042 Sum_probs=175.9
Q ss_pred HHhcCCHHHHHH-HHhcCC---CC----ChhhHHHHHHHHHHcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCH
Q 006246 178 YACFGCVNKARQ-ILDDGS---KS----DVICWNALIDGYLKCGDIEGAKELFKSTKD---KNTGSYNAMISGFARFGRF 246 (654)
Q Consensus 178 y~~~g~~~~A~~-~~~~~~---~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~ 246 (654)
|...|++++|.+ .|++.. +. +...|..+...|.+.|++++|+..|+++.+ .+..++..+...|.+.|++
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCH
Confidence 444567777776 666531 11 345566777777777777777777776654 2445666667777777777
Q ss_pred HHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcc-hHHHHHHHHHhcCChhHHHHHHHHH
Q 006246 247 EEARKLFNEMND---KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKF-VLSCVLAACASLGALDQGIWIHDHV 322 (654)
Q Consensus 247 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~ 322 (654)
++|...|+++.+ .+..+|..+...|...|++++|++.|+++.... |+.. .+..+... .. .
T Consensus 115 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~-------~~-------~ 178 (368)
T 1fch_A 115 LLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEG-------AG-------G 178 (368)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC----------------------
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHH-------hh-------h
Confidence 777777776542 355666777777777777777777777766643 2221 11110000 00 0
Q ss_pred HHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC--C---CHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCH
Q 006246 323 KRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM--K---EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDR 397 (654)
Q Consensus 323 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 397 (654)
..+ ...+..+...+ ..|++++|...|+++.. | +..+|..+...|...|++++|+..|+++.+.. +.+.
T Consensus 179 ----~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~ 251 (368)
T 1fch_A 179 ----AGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDY 251 (368)
T ss_dssp ------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred ----hcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCH
Confidence 000 00011122223 66777777777776653 2 35677777777777777777777777777652 2345
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-CCCC------------C
Q 006246 398 ITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-PMEP------------N 464 (654)
Q Consensus 398 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p------------~ 464 (654)
.++..+...+...|++++|...|+++.+. .+.+...+..+..+|.+.|++++|.+.++++ ...| .
T Consensus 252 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 329 (368)
T 1fch_A 252 LLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMS 329 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchh
Confidence 67777777777888888888888877763 2334566777778888888888888877765 1111 2
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHh
Q 006246 465 AAVWEALLGACRKHGEVEFGERLGKILLE 493 (654)
Q Consensus 465 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 493 (654)
..+|..+..++...|+.++|..++++.++
T Consensus 330 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 330 ENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp HHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred hHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 68899999999999999999888776554
No 24
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.73 E-value=2.5e-15 Score=148.63 Aligned_cols=261 Identities=13% Similarity=0.043 Sum_probs=197.6
Q ss_pred HHhcCCHHHHHHHHHhcCCCCH----hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHH
Q 006246 240 FARFGRFEEARKLFNEMNDKDE----ITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQG 315 (654)
Q Consensus 240 ~~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 315 (654)
....|++..|+..++.....+. .....+..+|...|++++|+..++. . -+|+..++..+...+...++.+.|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHHH
Confidence 3445777777777766654332 2344566777777777777765543 1 244556666777777777778888
Q ss_pred HHHHHHHHHcCC-CCchhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCC
Q 006246 316 IWIHDHVKRNSI-CVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMR 394 (654)
Q Consensus 316 ~~~~~~~~~~~~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 394 (654)
.+.++.+...+. +.+..++..+...|...|++++|.+.|++ ..+...+..++..|.+.|+.++|.+.|+++.+..
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-- 160 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD-- 160 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--
Confidence 888887777654 33566677788899999999999999998 5678899999999999999999999999999863
Q ss_pred CCHHHH---HHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 006246 395 PDRITF---ACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-PMEP-NAAVWE 469 (654)
Q Consensus 395 p~~~t~---~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~ 469 (654)
|+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|++.+++. ...| ++.+|.
T Consensus 161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~ 238 (291)
T 3mkr_A 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 554321 12233444568999999999999985 4567788999999999999999999999986 3344 688999
Q ss_pred HHHHHHHHhCChHH-HHHHHHHHHhcCCCCC---CchHHHHHHHH
Q 006246 470 ALLGACRKHGEVEF-GERLGKILLEMEPQNR---RCDDVAKMRKL 510 (654)
Q Consensus 470 ~ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~---~~~~a~~~~~~ 510 (654)
.++..+...|+.++ +.++++++++++|+++ ...+....|+.
T Consensus 239 ~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~~~~~~~fd~ 283 (291)
T 3mkr_A 239 NLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRAKENDFDR 283 (291)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 99999999999976 6789999999999997 33344444443
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.73 E-value=4.2e-16 Score=159.93 Aligned_cols=296 Identities=10% Similarity=-0.007 Sum_probs=211.1
Q ss_pred HHhccCCcHHHHH-HHHHHHHhCCC-C--ChhhHHHHHHHHHhcCCHHHHHHHHhcC---CCCChhhHHHHHHHHHHcCC
Q 006246 142 ACSITEADKEGVQ-VHAHVVKNGLC-G--DVHVKSSGIQMYACFGCVNKARQILDDG---SKSDVICWNALIDGYLKCGD 214 (654)
Q Consensus 142 ~~~~~~~~~~a~~-~~~~~~~~g~~-~--~~~~~~~li~~y~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~ 214 (654)
++...+++++|.. .+...++.... | +...+..+...|.+.|++++|...|+++ .+.+..+|..+...|.+.|+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 4566788888888 77766544221 1 3456788999999999999999999985 55678899999999999999
Q ss_pred HHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCC---HhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006246 215 IEGAKELFKSTKD---KNTGSYNAMISGFARFGRFEEARKLFNEMNDKD---EITWSAIIDGYTKDGYYKEALEVFNEMQ 288 (654)
Q Consensus 215 ~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~ 288 (654)
+++|+..|+++.+ .+..++..+...|...|++++|...|+++...+ ...+..+... .
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-----------------~ 176 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEG-----------------A 176 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-----------------------
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH-----------------h
Confidence 9999999998865 467789999999999999999999999876432 2222111000 0
Q ss_pred hCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-chhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHH
Q 006246 289 RDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICV-DAVLGTALVDMYAKCGRLDMAWKVFEDMKM---KEVFT 364 (654)
Q Consensus 289 ~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~ 364 (654)
. ...+. ..+..+ ..+...|++++|...+..+.+..... +..++..+...|.+.|++++|...|+++.. .+..+
T Consensus 177 ~-~~~~~-~~~~~~-~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 253 (368)
T 1fch_A 177 G-GAGLG-PSKRIL-GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLL 253 (368)
T ss_dssp -----------CTT-HHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred h-hhccc-HHHHHH-HHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHH
Confidence 0 00011 111122 22236777777777777777764322 567788888888888888888888887654 36778
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCC---------CCcch
Q 006246 365 WNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID---------PEVEH 435 (654)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~---------p~~~~ 435 (654)
|..+...|...|++++|+..|+++.+.. +.+...+..+...+.+.|++++|...|+++.+...-. .....
T Consensus 254 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 332 (368)
T 1fch_A 254 WNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENI 332 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHH
Confidence 8999999999999999999999988763 3356788889999999999999999999887642111 01568
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHh
Q 006246 436 YGCIVDLLGRAGYLAEAEEVISS 458 (654)
Q Consensus 436 ~~~li~~~~~~g~~~~A~~~~~~ 458 (654)
|..+..+|.+.|++++|..++++
T Consensus 333 ~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 333 WSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHHHhCChHhHHHhHHH
Confidence 99999999999999999988874
No 26
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.72 E-value=1.3e-13 Score=155.06 Aligned_cols=323 Identities=12% Similarity=0.092 Sum_probs=150.4
Q ss_pred HHHHHHHhccCCcHHHHHHHHHHHHhC--CCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCC
Q 006246 137 PTVFKACSITEADKEGVQVHAHVVKNG--LCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGD 214 (654)
Q Consensus 137 ~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 214 (654)
+...+++...|.+.++.++++.++-.+ +..+....+.|+.+..+. +..+..++.++...-+ ...+...+...|.
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lgl 1064 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNEL 1064 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCCC
Confidence 344555666666666666666666221 012233344444443333 2233333333322111 2223444444555
Q ss_pred HHHHHHHHHhcCC-------------------------CCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHH
Q 006246 215 IEGAKELFKSTKD-------------------------KNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIID 269 (654)
Q Consensus 215 ~~~A~~~~~~m~~-------------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 269 (654)
+++|..+|++... .+..+|..+..++.+.|++++|.+.|.+. .|...|..++.
T Consensus 1065 yEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~ 1142 (1630)
T 1xi4_A 1065 FEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQ 1142 (1630)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHH
Confidence 5555555554421 23444555555555555555555555443 34444555555
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHH
Q 006246 270 GYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDM 349 (654)
Q Consensus 270 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 349 (654)
.+.+.|++++|++.|...++.. ++....+.+..+|++.++++....+. + .++...+..+.+.|...|++++
T Consensus 1143 ~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~Yee 1213 (1630)
T 1xi4_A 1143 AANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDA 1213 (1630)
T ss_pred HHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHH
Confidence 5555555555555555444432 22222223555555555554322221 1 2233334445555555555555
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCC
Q 006246 350 AWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGI 429 (654)
Q Consensus 350 A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~ 429 (654)
|..+|... ..|..+...|.+.|++++|++.+++. .+..+|..+-.+|...|++..|...... +
T Consensus 1214 A~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~------I 1276 (1630)
T 1xi4_A 1214 AKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------I 1276 (1630)
T ss_pred HHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh------h
Confidence 55555553 25555555555555555555555544 1335555555555555555555443322 1
Q ss_pred CCCcchHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHh--CChHHHHHHHHHH
Q 006246 430 DPEVEHYGCIVDLLGRAGYLAEAEEVISSM-PMEP-NAAVWEALLGACRKH--GEVEFGERLGKIL 491 (654)
Q Consensus 430 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~--g~~~~a~~~~~~~ 491 (654)
..+...+..++..|.+.|.+++|+.+++.. +.+| ....|.-|...+.+. ++..++.++|..-
T Consensus 1277 iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~r 1342 (1630)
T 1xi4_A 1277 VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSR 1342 (1630)
T ss_pred hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 223344555555666666666666666544 2222 233444444444433 2333444444433
No 27
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.71 E-value=2.3e-14 Score=154.90 Aligned_cols=406 Identities=8% Similarity=0.013 Sum_probs=226.6
Q ss_pred CcchHHHHHhhhhhcCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHhcccccCCChHHHHHHHhcCC--CCCcchHHHH
Q 006246 27 SEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVH--KPNVFVWNSV 104 (654)
Q Consensus 27 ~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~~~g~~~~A~~~f~~~~--~~~~~~~~~l 104 (654)
|...+..++. ....|+++.++.++.++++.- +.+...|..++..+.+ .|++++|+.+|++.. .|++..|...
T Consensus 12 ~~~~w~~l~~---~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~--~~~~~~a~~~~~ral~~~p~~~lw~~~ 85 (530)
T 2ooe_A 12 DLDAWSILIR---EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIK--AKNYDKVEKLFQRCLMKVLHIDLWKCY 85 (530)
T ss_dssp CHHHHHHHHH---HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTCCCHHHHHHH
T ss_pred CHHHHHHHHH---HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhcCCChHHHHHH
Confidence 3344555543 355789999999999999864 4467889999999999 999999999999987 4777788887
Q ss_pred HHH-HHhCCCchHHHH----HHHHhHh-CCCCCCc-ccHHHHHHHHhc---------cCCcHHHHHHHHHHHHhCCCCCh
Q 006246 105 LRA-CLEHNEPWRVIS----LYSEMVG-VDSKPNK-FTYPTVFKACSI---------TEADKEGVQVHAHVVKNGLCGDV 168 (654)
Q Consensus 105 i~~-~~~~g~~~~A~~----~~~~m~~-~g~~p~~-~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~~g~~~~~ 168 (654)
+.. ....|+.++|.+ +|++... .|..|+. ..|...+..... .|+++.|+.+++..++.......
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~ 165 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE 165 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence 753 345688887766 7777654 3555543 455555554433 67899999999999873111112
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHh------cCC-------CC------
Q 006246 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKS------TKD-------KN------ 229 (654)
Q Consensus 169 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~------m~~-------~~------ 229 (654)
..|..........|. ..+..++.. +.++++.|..++.. ..+ |+
T Consensus 166 ~~~~~~~~~e~~~~~-~~~~~~l~~-----------------~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~ 227 (530)
T 2ooe_A 166 QLWRDYNKYEEGINI-HLAKKMIED-----------------RSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEA 227 (530)
T ss_dssp HHHHHHHHHHHHHCH-HHHHHHHHT-----------------THHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHH
T ss_pred HHHHHHHHHHHhhch-hHHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHH
Confidence 333333322111110 001111100 11223333333322 000 11
Q ss_pred --cchHHHHHHHHHhc----CCH----HHHHHHHHhcCC---CCHhHHHHHHHHHHh-------cCChH-------HHHH
Q 006246 230 --TGSYNAMISGFARF----GRF----EEARKLFNEMND---KDEITWSAIIDGYTK-------DGYYK-------EALE 282 (654)
Q Consensus 230 --~~~~~~li~~~~~~----g~~----~~A~~~~~~~~~---~~~~~~~~li~~~~~-------~g~~~-------~A~~ 282 (654)
...|...+...... ++. +.|..+|++... .+...|..++..+.+ .|+++ +|..
T Consensus 228 ~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~ 307 (530)
T 2ooe_A 228 QQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 307 (530)
T ss_dssp HHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHH
Confidence 11222222211111 111 244445554442 245556655555554 46654 6666
Q ss_pred HHHHHHhCCCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCc-hhHHHHHHHHHHHcCCHHHHHHHHhhcCCC
Q 006246 283 VFNEMQRDKIKP-RKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVD-AVLGTALVDMYAKCGRLDMAWKVFEDMKMK 360 (654)
Q Consensus 283 ~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~m~~~ 360 (654)
+|++..+. +.| +...+..++..+.+.|++++|..+|+.+++... .+ ..+|..++..+.+.|++++|+++|++..+.
T Consensus 308 ~~~~Al~~-~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~ 385 (530)
T 2ooe_A 308 IYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIED-IDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 385 (530)
T ss_dssp HHHHHTTT-TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccc-cCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 66666542 123 344455555556666666666666666665421 12 235666666666666677777777665542
Q ss_pred ---CHHHHHHHHH-HHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCC--cc
Q 006246 361 ---EVFTWNAMIG-GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPE--VE 434 (654)
Q Consensus 361 ---~~~~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~--~~ 434 (654)
+...|...+. .+...|+.++|..+|++.++.. +-+...+..++..+.+.|+.++|..+|++........|+ ..
T Consensus 386 ~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~ 464 (530)
T 2ooe_A 386 ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE 464 (530)
T ss_dssp TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHH
T ss_pred cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHH
Confidence 1112211111 1234677777777777766642 224556666666666777777777777777663222222 22
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHhC
Q 006246 435 HYGCIVDLLGRAGYLAEAEEVISSM 459 (654)
Q Consensus 435 ~~~~li~~~~~~g~~~~A~~~~~~m 459 (654)
.|...+....+.|+.+.+..+.+++
T Consensus 465 lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 465 IWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5666666666677777777666655
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.71 E-value=4.4e-16 Score=159.76 Aligned_cols=226 Identities=14% Similarity=0.076 Sum_probs=123.4
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHH
Q 006246 197 SDVICWNALIDGYLKCGDIEGAKELFKSTKD---KNTGSYNAMISGFARFGRFEEARKLFNEMND---KDEITWSAIIDG 270 (654)
Q Consensus 197 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 270 (654)
.+...|..+...+.+.|++++|+..|+++.+ .+..+|..+...|.+.|++++|...|+++.+ .+..+|..+...
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 3555677888888888888888888887764 3556777777777777888888777777653 356677777778
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCC-c----------chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-chhHHHHHH
Q 006246 271 YTKDGYYKEALEVFNEMQRDKIKPR-K----------FVLSCVLAACASLGALDQGIWIHDHVKRNSICV-DAVLGTALV 338 (654)
Q Consensus 271 ~~~~g~~~~A~~~~~~m~~~g~~p~-~----------~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li 338 (654)
|...|++++|+..|+++.+.. |+ . ..+..+...+...|++++|...+..+.+..... +..++..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 888888888888887776642 21 1 111222344445555555555555555443211 344444444
Q ss_pred HHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHH
Q 006246 339 DMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDR 415 (654)
Q Consensus 339 ~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 415 (654)
..|.+.|++++|.+.|+++.. .+..+|+.+...|...|++++|+..|+++.+.. +.+..++..+..+|...|++++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 455555555555544444332 233444444444444444444444444444431 1123344444444444444444
Q ss_pred HHHHHHHHHH
Q 006246 416 GLQALTYMQQ 425 (654)
Q Consensus 416 a~~~~~~~~~ 425 (654)
|...|+++.+
T Consensus 300 A~~~~~~al~ 309 (365)
T 4eqf_A 300 AVSNFLTALS 309 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.71 E-value=2e-16 Score=162.41 Aligned_cols=259 Identities=9% Similarity=-0.032 Sum_probs=207.0
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHH
Q 006246 229 NTGSYNAMISGFARFGRFEEARKLFNEMND---KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAA 305 (654)
Q Consensus 229 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 305 (654)
+...+..+...+.+.|++++|...|+++.+ .+..+|..+...|.+.|++++|+..|+++.+.. +.+..++..+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 455689999999999999999999998864 467889999999999999999999999998864 3456788889999
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCC---------chhHHHHHHHHHHHcCCHHHHHHHHhhcCC--C---CHHHHHHHHHH
Q 006246 306 CASLGALDQGIWIHDHVKRNSICV---------DAVLGTALVDMYAKCGRLDMAWKVFEDMKM--K---EVFTWNAMIGG 371 (654)
Q Consensus 306 ~~~~g~~~~a~~~~~~~~~~~~~~---------~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~---~~~~~~~li~~ 371 (654)
+...|++++|...+..+.+..... ...++..+...|.+.|++++|.+.|+++.. | +..+|..+...
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 999999999999999998754211 122334468889999999999999998864 2 67889999999
Q ss_pred HHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHH
Q 006246 372 LAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAE 451 (654)
Q Consensus 372 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~ 451 (654)
|...|++++|++.|+++.+.. +.+..++..+..++...|++++|...|+++.+. .+.+...+..+..+|.+.|++++
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999998863 346778999999999999999999999999874 23347788899999999999999
Q ss_pred HHHHHHhC-CCCC-------------CHHHHHHHHHHHHHhCChHHHHHHHHHH
Q 006246 452 AEEVISSM-PMEP-------------NAAVWEALLGACRKHGEVEFGERLGKIL 491 (654)
Q Consensus 452 A~~~~~~m-~~~p-------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 491 (654)
|.+.++++ ...| +..+|..+..++...|+.+.+..+.++.
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 99999876 1111 3678999999999999999888776653
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.67 E-value=1.3e-15 Score=153.33 Aligned_cols=272 Identities=12% Similarity=-0.033 Sum_probs=162.1
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHH
Q 006246 198 DVICWNALIDGYLKCGDIEGAKELFKSTKD---KNTGSYNAMISGFARFGRFEEARKLFNEMND---KDEITWSAIIDGY 271 (654)
Q Consensus 198 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 271 (654)
+...|..+...+...|++++|+.+|+++.+ .+...+..+...+.+.|++++|...|+++.+ .+...|..+...|
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 455667777778888888888888877654 3455667777777777777777777776653 2556677777777
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHH-HH-HHHHcCCHHH
Q 006246 272 TKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTAL-VD-MYAKCGRLDM 349 (654)
Q Consensus 272 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~-~y~~~g~~~~ 349 (654)
...|++++|++.|+++..... .+...+..+...+ ++......+ .. .+...|++++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQP-QYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYRE 156 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTST-TTTTC------------------------------------------CCTTSHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHHH
Confidence 777777777777777776531 1222222220000 000000011 11 2444555566
Q ss_pred HHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Q 006246 350 AWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQM 426 (654)
Q Consensus 350 A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 426 (654)
|.+.|+++.. .+...|..+...|...|++++|++.++++.+.. +.+..++..+...+...|++++|...++++.+.
T Consensus 157 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 235 (327)
T 3cv0_A 157 CRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI 235 (327)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 6666555442 245566666666666666666666666666542 224556666666666666777777666666653
Q ss_pred cCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-------------CHHHHHHHHHHHHHhCChHHHHHHHHHHH
Q 006246 427 YGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-PMEP-------------NAAVWEALLGACRKHGEVEFGERLGKILL 492 (654)
Q Consensus 427 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 492 (654)
.+.+...+..+...|.+.|++++|.+.++++ ...| +..+|..+..++...|+.++|..++++++
T Consensus 236 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 236 --NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred --CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 1223455666666777777777777766655 1112 35677777777888888888877777665
Q ss_pred hcC
Q 006246 493 EME 495 (654)
Q Consensus 493 ~~~ 495 (654)
+..
T Consensus 314 ~~~ 316 (327)
T 3cv0_A 314 EPF 316 (327)
T ss_dssp HHH
T ss_pred Hhc
Confidence 543
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.67 E-value=1.1e-14 Score=146.46 Aligned_cols=269 Identities=11% Similarity=-0.040 Sum_probs=200.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHhcC---CCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC---CCcchHHHHHHHH
Q 006246 167 DVHVKSSGIQMYACFGCVNKARQILDDG---SKSDVICWNALIDGYLKCGDIEGAKELFKSTKD---KNTGSYNAMISGF 240 (654)
Q Consensus 167 ~~~~~~~li~~y~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~ 240 (654)
+...+..+...+...|++++|..+|+++ .+.+...|..+...+.+.|++++|...|+++.+ .+..++..+...|
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 3445677888999999999999999986 456788999999999999999999999998865 3667889999999
Q ss_pred HhcCCHHHHHHHHHhcCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHH--HHHhcCChhHH
Q 006246 241 ARFGRFEEARKLFNEMNDK---DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLA--ACASLGALDQG 315 (654)
Q Consensus 241 ~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~--~~~~~g~~~~a 315 (654)
...|++++|.+.|+++.+. +...+..+... .|+......+.. .+...|++++|
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~A 157 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYREC 157 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC------------------------------------------CCTTSHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHHH
Confidence 9999999999999987643 22223222110 111111112212 24556667777
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcC
Q 006246 316 IWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREK 392 (654)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 392 (654)
...+..+.+.. +.+..++..+...|.+.|++++|.+.|+++.. .+..+|..+...|...|++++|+..|+++.+..
T Consensus 158 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 236 (327)
T 3cv0_A 158 RTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN 236 (327)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 77777776654 33567777788888888888888888887653 356788888999999999999999999988763
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCC----------CcchHHHHHHHHHHcCCHHHHHHHHHhC
Q 006246 393 MRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDP----------EVEHYGCIVDLLGRAGYLAEAEEVISSM 459 (654)
Q Consensus 393 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p----------~~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (654)
+.+..++..+...+...|++++|.+.++++.+...-.. +...|..+..+|.+.|++++|.+++++.
T Consensus 237 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 237 -PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred -CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 33567888888899999999999999998887421100 3567888999999999999999998865
No 32
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.66 E-value=8.2e-17 Score=175.25 Aligned_cols=131 Identities=16% Similarity=0.201 Sum_probs=113.2
Q ss_pred CCchhHHHHHHHHHHHcCCHHHHHHHHhhcC-------CCCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHH
Q 006246 328 CVDAVLGTALVDMYAKCGRLDMAWKVFEDMK-------MKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITF 400 (654)
Q Consensus 328 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 400 (654)
..-..+||+||++|+++|++++|.++|++|. .||++|||+||.+|++.|+.++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3446789999999999999999999997764 479999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCC-HHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC
Q 006246 401 ACVLSACAHAGM-IDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459 (654)
Q Consensus 401 ~~ll~~~~~~g~-~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (654)
+++|.++++.|+ .++|.++|++|.+. |+.||..+|++++....|.+-++...++...+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 999999999997 57899999999996 99999999999998887775555554443333
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.65 E-value=1.5e-14 Score=143.06 Aligned_cols=239 Identities=9% Similarity=-0.006 Sum_probs=146.3
Q ss_pred ccCCcHHHHHHHHHHHHhCCCCCh--hhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 006246 145 ITEADKEGVQVHAHVVKNGLCGDV--HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF 222 (654)
Q Consensus 145 ~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 222 (654)
..|+.+.|....+.... ..|+. .....+...|...|+++.|...++...+++..++..+...+...|+.++|++.+
T Consensus 11 ~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l 88 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAEL 88 (291)
T ss_dssp HTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 34555555544443322 12221 233445667777777777777776665556667777777777777788888877
Q ss_pred HhcCC----C-CcchHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcc
Q 006246 223 KSTKD----K-NTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKF 297 (654)
Q Consensus 223 ~~m~~----~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 297 (654)
+++.. | +...+..+...|.+.|++++|.+.|++ ..+...+..++..|.+.|++++|.+.|+++.+.. |+..
T Consensus 89 ~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~ 164 (291)
T 3mkr_A 89 DREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDAT 164 (291)
T ss_dssp HHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH
T ss_pred HHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcH
Confidence 77642 3 344566666777778888888887777 4466677777788888888888888888877653 4432
Q ss_pred hHHHHH----HHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHH
Q 006246 298 VLSCVL----AACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIG 370 (654)
Q Consensus 298 t~~~ll----~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~ 370 (654)
...+. ..+...|++++|..+++++.+.. +.+..+++.+..+|.+.|++++|.+.|++... .+..+|..++.
T Consensus 165 -~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~ 242 (291)
T 3mkr_A 165 -LTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVV 242 (291)
T ss_dssp -HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 22222 22233466666666666666652 44556666666666666666666666665443 24555666666
Q ss_pred HHHHcCChhH-HHHHHHHHhhc
Q 006246 371 GLAMHGRADD-AIELFFKMQRE 391 (654)
Q Consensus 371 ~~~~~g~~~~-A~~l~~~m~~~ 391 (654)
.+...|+.++ +.++++++.+.
T Consensus 243 ~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 243 LSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHh
Confidence 6666666544 34566665553
No 34
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.65 E-value=2.6e-14 Score=152.04 Aligned_cols=373 Identities=7% Similarity=-0.068 Sum_probs=218.4
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHhHhC-----C--CCC-CcccHHHHHHHHhccCCcHHHHHHHHHHHHhCC----
Q 006246 97 NVFVWNSVLRACLEHNEPWRVISLYSEMVGV-----D--SKP-NKFTYPTVFKACSITEADKEGVQVHAHVVKNGL---- 164 (654)
Q Consensus 97 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g--~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~---- 164 (654)
.+..||.|...+...|++++|++.|++..+. + ..| ...+|..+..++...|++++|...++++++...
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3557899999999999999999999987541 1 123 235777888888899999999998888775411
Q ss_pred --CC-ChhhHHHHHHHHHh--cCCHHHHHHHHhcC---CCCChhhHHHHHHH---HHHcCCHHHHHHHHHhcCC---CCc
Q 006246 165 --CG-DVHVKSSGIQMYAC--FGCVNKARQILDDG---SKSDVICWNALIDG---YLKCGDIEGAKELFKSTKD---KNT 230 (654)
Q Consensus 165 --~~-~~~~~~~li~~y~~--~g~~~~A~~~~~~~---~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~---~~~ 230 (654)
.+ ...++..+..++.. .+++++|.+.|++. .+.++..+..+... +...++.++|+..|++..+ .+.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 11 22344444444444 34688888888874 44455555555544 3345666777777776543 234
Q ss_pred chHHHHHHHHHh----cCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cchHHHH
Q 006246 231 GSYNAMISGFAR----FGRFEEARKLFNEMND---KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPR-KFVLSCV 302 (654)
Q Consensus 231 ~~~~~li~~~~~----~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l 302 (654)
.++..+...+.. .|++++|.+.+++... .+...+..+...|...|++++|++.|++..+. .|+ ..++..+
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 287 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHH
Confidence 455555544444 3456677777776542 35667777777788888888888888777765 333 3334433
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChh
Q 006246 303 LAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRAD 379 (654)
Q Consensus 303 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~ 379 (654)
..++...+.. ..... ...........+..+.|...|++... .+..+|..+...|...|+++
T Consensus 288 g~~y~~~~~~---------~~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~ 351 (472)
T 4g1t_A 288 GCCYRAKVFQ---------VMNLR-------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYE 351 (472)
T ss_dssp HHHHHHHHHH---------HHHC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHH---------hhhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHH
Confidence 3333211100 00000 00011111112345677777776553 35567888999999999999
Q ss_pred HHHHHHHHHhhcCCCCCHH--HHHHHHH-HHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHH
Q 006246 380 DAIELFFKMQREKMRPDRI--TFACVLS-ACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVI 456 (654)
Q Consensus 380 ~A~~l~~~m~~~g~~p~~~--t~~~ll~-~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 456 (654)
+|++.|++.++....|... .+..+.. ...+.|+.++|+..|.+..+ +.|+....... ...+.+++
T Consensus 352 ~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~---------~~~l~~~~ 419 (472)
T 4g1t_A 352 EAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKM---------KDKLQKIA 419 (472)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHH---------HHHHHHHH
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHH---------HHHHHHHH
Confidence 9999999998865443322 2222222 34578999999999998876 45664332222 23333444
Q ss_pred HhC-C-CCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCC
Q 006246 457 SSM-P-MEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 457 ~~m-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 499 (654)
++. . .+.++.+|..|+..|...|++++|+..|+++++++|.++
T Consensus 420 ~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p 464 (472)
T 4g1t_A 420 KMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIP 464 (472)
T ss_dssp HHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 433 1 234678999999999999999999999999999888764
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.62 E-value=3.9e-16 Score=170.03 Aligned_cols=147 Identities=14% Similarity=0.124 Sum_probs=118.2
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhcC-------CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHH
Q 006246 230 TGSYNAMISGFARFGRFEEARKLFNEMN-------DKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCV 302 (654)
Q Consensus 230 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 302 (654)
..|||+||++|++.|++++|.++|++|. .||+++||+||.+|++.|++++|.++|++|.+.|+.||.+||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3478888888888888888888887653 579999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCh-hHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCCC-----CHHHHHHHHHHHHHcC
Q 006246 303 LAACASLGAL-DQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK-----EVFTWNAMIGGLAMHG 376 (654)
Q Consensus 303 l~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-----~~~~~~~li~~~~~~g 376 (654)
|.++++.|+. +.|.+++++|.+.|+.||..+|++++..+.+.+-++...+++..+..+ .+.+.+.|...|.+.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 9999999985 788999999999999999999999998887765555555554444321 1233344455555444
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.57 E-value=1.1e-13 Score=133.82 Aligned_cols=224 Identities=12% Similarity=-0.028 Sum_probs=176.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC--c----hhHHH
Q 006246 262 ITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICV--D----AVLGT 335 (654)
Q Consensus 262 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~----~~~~~ 335 (654)
..|..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|...+..+.+..... + ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 456777778888888888888888887766 667777788888888888888888888877643211 1 57778
Q ss_pred HHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHH
Q 006246 336 ALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDR 415 (654)
Q Consensus 336 ~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 415 (654)
.+...|.+.|++++|...|+++...+.. ...+...|++++|+..++++.... +.+...+..+...+...|++++
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 157 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPN 157 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHH
Confidence 8888888999999999888877652111 234666788899999999988752 2244577788888899999999
Q ss_pred HHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Q 006246 416 GLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-PM-EPNAAVWEALLGACRKHGEVEFGERLGKILLE 493 (654)
Q Consensus 416 a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 493 (654)
|...++++.+. .+.+...+..+...|.+.|++++|++.+++. .. +.+..+|..+...+...|++++|...++++++
T Consensus 158 A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 158 AVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999874 2345678888999999999999999999887 22 33588899999999999999999999999999
Q ss_pred cC
Q 006246 494 ME 495 (654)
Q Consensus 494 ~~ 495 (654)
+.
T Consensus 236 ~~ 237 (258)
T 3uq3_A 236 KD 237 (258)
T ss_dssp HH
T ss_pred hC
Confidence 88
No 37
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.56 E-value=3.1e-12 Score=135.87 Aligned_cols=309 Identities=12% Similarity=0.003 Sum_probs=159.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhcC------------CCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHH
Q 006246 168 VHVKSSGIQMYACFGCVNKARQILDDG------------SKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNA 235 (654)
Q Consensus 168 ~~~~~~li~~y~~~g~~~~A~~~~~~~------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 235 (654)
...||.|...|...|++++|++.|++. .+...++|+.+...|...|++++|...+++..+
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~-------- 122 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKH-------- 122 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH--------
Confidence 445666666666667766666666442 122345566666666666666666666544321
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCC----CHhHHHHHHHHHHhc--CChHHHHHHHHHHHhCCCCCCc-chHHHHHHH---
Q 006246 236 MISGFARFGRFEEARKLFNEMNDK----DEITWSAIIDGYTKD--GYYKEALEVFNEMQRDKIKPRK-FVLSCVLAA--- 305 (654)
Q Consensus 236 li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~--- 305 (654)
+......+ ...+++.+..++... +++++|++.|++..+. .|+. ..+..+..+
T Consensus 123 ----------------i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~ 184 (472)
T 4g1t_A 123 ----------------VCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYR 184 (472)
T ss_dssp ----------------HHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHH
T ss_pred ----------------HhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 11111111 122333333333322 2345555555555443 2222 122222212
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHH----cCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCCh
Q 006246 306 CASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAK----CGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRA 378 (654)
Q Consensus 306 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~ 378 (654)
+...++.++|.+.+..+++.. +.+..++..+...+.. .|+.++|.+.+++... .+..+|..+...|...|++
T Consensus 185 l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~ 263 (472)
T 4g1t_A 185 LDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEP 263 (472)
T ss_dssp HHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCH
T ss_pred hcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCch
Confidence 223344445555555544443 2233333333333332 2344455555554332 2444555555555555555
Q ss_pred hHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHc-------------------cCCHHHHHHHHHHHHHHcCCCCCcchHHH
Q 006246 379 DDAIELFFKMQREKMRP-DRITFACVLSACAH-------------------AGMIDRGLQALTYMQQMYGIDPEVEHYGC 438 (654)
Q Consensus 379 ~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~-------------------~g~~~~a~~~~~~~~~~~g~~p~~~~~~~ 438 (654)
++|++.|++..+. .| +..++..+...+.. .+..++|...++...+. -+.+...+..
T Consensus 264 ~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~ 339 (472)
T 4g1t_A 264 DKAIELLKKALEY--IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVCSI 339 (472)
T ss_dssp HHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCHHH
T ss_pred HHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhhhh
Confidence 5555555555543 22 22233333322211 22356788888887763 2345677888
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCCCHHH----HHHHHH-HHHHhCChHHHHHHHHHHHhcCCCCCCchHHHHH
Q 006246 439 IVDLLGRAGYLAEAEEVISSM-PMEPNAAV----WEALLG-ACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKM 507 (654)
Q Consensus 439 li~~~~~~g~~~~A~~~~~~m-~~~p~~~~----~~~ll~-~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~a~~~ 507 (654)
+...|.+.|++++|++.|++. ...|+... +..+.. .....|+.++|+..|++++++.|++..+......
T Consensus 340 lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~ 414 (472)
T 4g1t_A 340 LASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDK 414 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 999999999999999999876 33444322 333333 2346789999999999999999988644444333
No 38
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.54 E-value=6.2e-13 Score=129.88 Aligned_cols=230 Identities=13% Similarity=0.028 Sum_probs=128.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCc--hhHHHHHHHHHHH
Q 006246 266 AIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVD--AVLGTALVDMYAK 343 (654)
Q Consensus 266 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~y~~ 343 (654)
.....+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+..+.+....++ ...+..+...|.+
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 33444455555555555555554432 11223444444455555555555555555544221111 1224555555566
Q ss_pred cCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 006246 344 CGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQAL 420 (654)
Q Consensus 344 ~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 420 (654)
.|++++|.+.|++... .+..+|..+...|...|++++|++.|++..+.. +.+...+..+...+...+++++|.+.|
T Consensus 87 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 165 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSF 165 (272)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666555443 244556666666666666666666666665541 223334444442333344666666666
Q ss_pred HHHHHHcCCCCCcchHHHHHHHHHHcCC---HHHHHHHHHhC----CCCCC------HHHHHHHHHHHHHhCChHHHHHH
Q 006246 421 TYMQQMYGIDPEVEHYGCIVDLLGRAGY---LAEAEEVISSM----PMEPN------AAVWEALLGACRKHGEVEFGERL 487 (654)
Q Consensus 421 ~~~~~~~g~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m----~~~p~------~~~~~~ll~~~~~~g~~~~a~~~ 487 (654)
+.+.+. .+.+...+..+..++...|+ +++|...+++. ...|+ ..+|..+...|...|++++|...
T Consensus 166 ~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 243 (272)
T 3u4t_A 166 VKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAA 243 (272)
T ss_dssp HHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666653 12224455555666666665 55555555544 11122 35778889999999999999999
Q ss_pred HHHHHhcCCCCC
Q 006246 488 GKILLEMEPQNR 499 (654)
Q Consensus 488 ~~~~~~~~p~~~ 499 (654)
++++++++|++.
T Consensus 244 ~~~al~~~p~~~ 255 (272)
T 3u4t_A 244 WKNILALDPTNK 255 (272)
T ss_dssp HHHHHHHCTTCH
T ss_pred HHHHHhcCccHH
Confidence 999999999984
No 39
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.53 E-value=9.3e-13 Score=138.84 Aligned_cols=242 Identities=10% Similarity=0.064 Sum_probs=120.8
Q ss_pred hhcCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHhcccccCCCh---HHHHHHHhcCCCCCcchHHHHHHHHHhCC---
Q 006246 39 NTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNF---ELALKVFNSVHKPNVFVWNSVLRACLEHN--- 112 (654)
Q Consensus 39 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~~~g~~---~~A~~~f~~~~~~~~~~~~~li~~~~~~g--- 112 (654)
.....|+++.|.+++..+.+.| ++..+..|-.+|.. .|+. ++|...|++..+.+..++..|...+...+
T Consensus 12 ~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~--~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~ 86 (452)
T 3e4b_A 12 EALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVG--TRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGAT 86 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC------------------------------CHHHHHHHHHTC--CC
T ss_pred HHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHc--cCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCC
Confidence 3445789999999999999887 34455667777777 7888 89999999888667778888887666655
Q ss_pred --CchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCc---HHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCC----
Q 006246 113 --EPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEAD---KEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGC---- 183 (654)
Q Consensus 113 --~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~---- 183 (654)
++++|+..|++..+.|. ...+..+-..+...+.. ..+.+.+......| ++.....|..+|...+.
T Consensus 87 ~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~ 160 (452)
T 3e4b_A 87 EAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQH 160 (452)
T ss_dssp HHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGG
T ss_pred CcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccC
Confidence 67899999999988663 23555555555544432 33444444444444 34556666777766663
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHHcC---CHHHHHHHHHhcCCC---CcchHHHHHHHHHhc----CCHHHHHHHH
Q 006246 184 VNKARQILDDGSKSDVICWNALIDGYLKCG---DIEGAKELFKSTKDK---NTGSYNAMISGFARF----GRFEEARKLF 253 (654)
Q Consensus 184 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~----g~~~~A~~~~ 253 (654)
.+.+..+++.....++..+..|...|.+.| +.++|+..|++..+. +...+..|..+|... +++++|...|
T Consensus 161 ~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~ 240 (452)
T 3e4b_A 161 LDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALL 240 (452)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 333444444444445556666666666666 555555555554332 112223444444332 3455555555
Q ss_pred HhcCCCCHhHHHHHHHH-H--HhcCChHHHHHHHHHHHhCC
Q 006246 254 NEMNDKDEITWSAIIDG-Y--TKDGYYKEALEVFNEMQRDK 291 (654)
Q Consensus 254 ~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g 291 (654)
++....+...+..+... | ...+++++|++.|++..+.|
T Consensus 241 ~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g 281 (452)
T 3e4b_A 241 EKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD 281 (452)
T ss_dssp HHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC
Confidence 54441133344444443 2 23444455555554444433
No 40
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.51 E-value=7.8e-12 Score=122.27 Aligned_cols=226 Identities=11% Similarity=-0.073 Sum_probs=179.5
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCchhHHH
Q 006246 260 DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACAS----LGALDQGIWIHDHVKRNSICVDAVLGT 335 (654)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 335 (654)
+..++..+...|...|++++|++.|++..+.+ +...+..+...+.. .+++++|...+....+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 45566677777777788888888887777632 34556666667777 788888888888877765 566777
Q ss_pred HHHHHHHH----cCCHHHHHHHHhhcCC-CCHHHHHHHHHHHHH----cCChhHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 006246 336 ALVDMYAK----CGRLDMAWKVFEDMKM-KEVFTWNAMIGGLAM----HGRADDAIELFFKMQREKMRPDRITFACVLSA 406 (654)
Q Consensus 336 ~li~~y~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 406 (654)
.+..+|.. .+++++|.+.|++... .+..++..+...|.. .+++++|++.|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 78888888 8888888888887765 367788888888888 899999999999998865 55667777777
Q ss_pred HHc----cCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHH----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-
Q 006246 407 CAH----AGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGR----AGYLAEAEEVISSMPMEPNAAVWEALLGACRK- 477 (654)
Q Consensus 407 ~~~----~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~- 477 (654)
+.. .+++++|...|++..+. .+...+..+..+|.. .+++++|++.+++.-...+...+..+...|..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcC
Confidence 877 89999999999998873 245678888899999 99999999999887222347788889999998
Q ss_pred ---hCChHHHHHHHHHHHhcCCCC
Q 006246 478 ---HGEVEFGERLGKILLEMEPQN 498 (654)
Q Consensus 478 ---~g~~~~a~~~~~~~~~~~p~~ 498 (654)
.+++++|...++++++++|++
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CCcccCHHHHHHHHHHHHHcCCHH
Confidence 999999999999999998864
No 41
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.49 E-value=5.1e-12 Score=121.81 Aligned_cols=167 Identities=12% Similarity=0.045 Sum_probs=122.9
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCC-CHHHHHHHHHH
Q 006246 331 AVLGTALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRP-DRITFACVLSA 406 (654)
Q Consensus 331 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~ 406 (654)
..++..+...|.+.|++++|.+.|+++.. .+...|..+...|...|++++|+++|+++.+.+..| +...+..+...
T Consensus 71 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~ 150 (252)
T 2ho1_A 71 ADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLV 150 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHH
Confidence 44555556666666666666666665442 255667777777777888888888888877633344 34567777778
Q ss_pred HHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHhCChHHH
Q 006246 407 CAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-PM-EPNAAVWEALLGACRKHGEVEFG 484 (654)
Q Consensus 407 ~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a 484 (654)
+...|++++|.++++++.+. .+.+...+..+...|.+.|++++|.+.++++ .. +.+...|..+...+...|+.++|
T Consensus 151 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 228 (252)
T 2ho1_A 151 SLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTA 228 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHH
Confidence 88888888888888888764 2334667788888888999999999888876 32 34677888888899999999999
Q ss_pred HHHHHHHHhcCCCCC
Q 006246 485 ERLGKILLEMEPQNR 499 (654)
Q Consensus 485 ~~~~~~~~~~~p~~~ 499 (654)
.+.++++++..|++.
T Consensus 229 ~~~~~~~~~~~p~~~ 243 (252)
T 2ho1_A 229 ASYGLQLKRLYPGSL 243 (252)
T ss_dssp HHHHHHHHHHCTTSH
T ss_pred HHHHHHHHHHCCCCH
Confidence 999999999999874
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.49 E-value=2.2e-12 Score=135.91 Aligned_cols=331 Identities=9% Similarity=0.017 Sum_probs=169.7
Q ss_pred CCChHHHHHHHhcCCC-CCcchHHHHHHHHHhCCCc---hHHHHHHHHhHhCCCCCCcccHHHHHHHHhccC-----CcH
Q 006246 80 FSNFELALKVFNSVHK-PNVFVWNSVLRACLEHNEP---WRVISLYSEMVGVDSKPNKFTYPTVFKACSITE-----ADK 150 (654)
Q Consensus 80 ~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~-----~~~ 150 (654)
.|++++|.+.|++..+ .+..++..|...|...|+. ++|+..|++..+. +...+..+-..+...+ +.+
T Consensus 16 ~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~~~ 91 (452)
T 3e4b_A 16 RGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATEAEHH 91 (452)
T ss_dssp HHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC--CCHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcCHH
Confidence 4566666666655442 2344444454555555555 5666666555532 2333333333222222 445
Q ss_pred HHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC-CC
Q 006246 151 EGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD-KN 229 (654)
Q Consensus 151 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~ 229 (654)
+|...+....+.|. ...+..|..+|...+..+.+ .++...+..... .+
T Consensus 92 ~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~----------------------------~~a~~~~~~a~~~g~ 140 (452)
T 3e4b_A 92 EAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPN----------------------------VNAQQQISQWQAAGY 140 (452)
T ss_dssp HHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTT----------------------------CCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCC----------------------------HHHHHHHHHHHHCCC
Confidence 55555555555432 12444444444433322111 112222222221 23
Q ss_pred cchHHHHHHHHHhcC----CHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC---ChHHHHHHHHHHHhCCCCCCcchHHHH
Q 006246 230 TGSYNAMISGFARFG----RFEEARKLFNEMNDKDEITWSAIIDGYTKDG---YYKEALEVFNEMQRDKIKPRKFVLSCV 302 (654)
Q Consensus 230 ~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~l 302 (654)
...+..|...|...+ ..+.+..+++.....+...+..+...|...| +.++|++.|++..+.| .++...+..+
T Consensus 141 ~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~L 219 (452)
T 3e4b_A 141 PEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSV 219 (452)
T ss_dssp TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHH
Confidence 445555555555555 3444555566666656667777777777777 7777777777777765 3344433445
Q ss_pred HHHHHhc----CChhHHHHHHHHHHHcCCCCchhHHHHHHHH-H--HHcCCHHHHHHHHhhcCCC-CHHHHHHHHHHHHH
Q 006246 303 LAACASL----GALDQGIWIHDHVKRNSICVDAVLGTALVDM-Y--AKCGRLDMAWKVFEDMKMK-EVFTWNAMIGGLAM 374 (654)
Q Consensus 303 l~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-y--~~~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~ 374 (654)
...|... ++.++|...|.... +.++..+..|..+ | ...+++++|.+.|++..+. +..++..|...|.
T Consensus 220 g~~y~~g~~~~~d~~~A~~~~~~aa----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~- 294 (452)
T 3e4b_A 220 ARVLGDATLGTPDEKTAQALLEKIA----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY- 294 (452)
T ss_dssp HHHHTCGGGSSCCHHHHHHHHHHHG----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-
T ss_pred HHHHhCCCCCCCCHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-
Confidence 5555443 56777777777766 2345556666666 3 3567777777777766543 5666666666666
Q ss_pred cC-----ChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHH
Q 006246 375 HG-----RADDAIELFFKMQREKMRPDRITFACVLSACAH----AGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGR 445 (654)
Q Consensus 375 ~g-----~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~ 445 (654)
.| +.++|+++|++.. .| +......|...|.. ..+.++|..+|++..+. | +......|..+|..
T Consensus 295 ~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~~ 366 (452)
T 3e4b_A 295 EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN-G---QNSADFAIAQLFSQ 366 (452)
T ss_dssp HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT-T---CTTHHHHHHHHHHS
T ss_pred cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh-C---hHHHHHHHHHHHHh
Confidence 44 7777777777766 33 44555555555554 23777777777777652 3 34455566666653
Q ss_pred ----cCCHHHHHHHHHhC
Q 006246 446 ----AGYLAEAEEVISSM 459 (654)
Q Consensus 446 ----~g~~~~A~~~~~~m 459 (654)
..+.++|...|+..
T Consensus 367 G~g~~~d~~~A~~~~~~A 384 (452)
T 3e4b_A 367 GKGTKPDPLNAYVFSQLA 384 (452)
T ss_dssp CTTBCCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHH
Confidence 34677777777665
No 43
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.48 E-value=3.2e-12 Score=124.83 Aligned_cols=220 Identities=13% Similarity=-0.032 Sum_probs=168.0
Q ss_pred cCChHHHHHHHHHHHhCCCCC---CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHH
Q 006246 274 DGYYKEALEVFNEMQRDKIKP---RKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMA 350 (654)
Q Consensus 274 ~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 350 (654)
.|++++|++.|+++.+..... +..++..+...+...|++++|...+..+.+.. +.+..++..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 466777777777777653211 34456666777777788888888887777764 34577788888888888888888
Q ss_pred HHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHc
Q 006246 351 WKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY 427 (654)
Q Consensus 351 ~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 427 (654)
.+.|+++.. .+..+|..+...|...|++++|+..|+++.+. .|+.......+..+...|++++|...++.....
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 173 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 173 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 888887764 36778889999999999999999999999885 455555555556667779999999999888774
Q ss_pred CCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCC
Q 006246 428 GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-PMEPN-----AAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 428 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 499 (654)
.+++... ..++..+...++.++|.+.+++. ...|+ ..+|..+...+...|++++|...++++++++|++.
T Consensus 174 -~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 249 (275)
T 1xnf_A 174 -SDKEQWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 249 (275)
T ss_dssp -SCCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred -CCcchHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH
Confidence 2344433 44777788888899999999876 22232 57888999999999999999999999999999864
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.48 E-value=6.4e-12 Score=122.59 Aligned_cols=244 Identities=10% Similarity=0.001 Sum_probs=184.2
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc--chHHHHHHH
Q 006246 231 GSYNAMISGFARFGRFEEARKLFNEMND---KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRK--FVLSCVLAA 305 (654)
Q Consensus 231 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~ 305 (654)
..+......+.+.|++++|...|++..+ .+...|..+...|...|++++|++.|++....+..|+. ..|..+...
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 3445566677777888888888877653 24557888888999999999999999998874322222 237778888
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHH
Q 006246 306 CASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAI 382 (654)
Q Consensus 306 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~ 382 (654)
+...|++++|...+..+.+.. +.+..++..+...|.+.|++++|.+.|++... .+...|..+...+...+++++|+
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999988875 34667888999999999999999999999876 36678888883444456999999
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHcCCCCCc------chHHHHHHHHHHcCCHHHHH
Q 006246 383 ELFFKMQREKMRPDRITFACVLSACAHAGM---IDRGLQALTYMQQMYGIDPEV------EHYGCIVDLLGRAGYLAEAE 453 (654)
Q Consensus 383 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~---~~~a~~~~~~~~~~~g~~p~~------~~~~~li~~~~~~g~~~~A~ 453 (654)
+.|+++.+.. +.+...+..+...+...|+ .++|...++++.+...-.|+. ..|..+...|.+.|++++|.
T Consensus 163 ~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 163 SSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999998863 2346677778888888888 888999999888754334542 57888999999999999999
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHH
Q 006246 454 EVISSM-PMEP-NAAVWEALLGACR 476 (654)
Q Consensus 454 ~~~~~m-~~~p-~~~~~~~ll~~~~ 476 (654)
+.+++. ...| +...+..+.....
T Consensus 242 ~~~~~al~~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 242 AAWKNILALDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp HHHHHHHHHCTTCHHHHHHHC----
T ss_pred HHHHHHHhcCccHHHHHHHhhhhhc
Confidence 999987 3344 5666655544433
No 45
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.48 E-value=1.7e-12 Score=132.78 Aligned_cols=245 Identities=10% Similarity=0.042 Sum_probs=179.1
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCC-hhHHHHHHHHHHHcCCCCchhHHHHHHH
Q 006246 261 EITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGA-LDQGIWIHDHVKRNSICVDAVLGTALVD 339 (654)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~ 339 (654)
...|+.+...+.+.|++++|++.|++.+... +-+...|..+..++...|+ +++|+..++.+++.. +.+..+|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 3456667777777777777777777777653 2244566666677777775 777777777777765 346677777888
Q ss_pred HHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHc-cCCHHH
Q 006246 340 MYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAH-AGMIDR 415 (654)
Q Consensus 340 ~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~-~g~~~~ 415 (654)
+|.+.|++++|+..|+++.. .+...|..+..++.+.|++++|+..|+++++... -+...|+.+..++.. .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcchH
Confidence 88888888888888887764 4677888888888888888888888888888642 256678888888877 555466
Q ss_pred H-----HHHHHHHHHHcCCCCC-cchHHHHHHHHHHcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHhC-------
Q 006246 416 G-----LQALTYMQQMYGIDPE-VEHYGCIVDLLGRAG--YLAEAEEVISSMPMEP-NAAVWEALLGACRKHG------- 479 (654)
Q Consensus 416 a-----~~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~g------- 479 (654)
| +..+++..+. .|+ ...|..+..+|...| ++++|++.++++...| +...+..++..|...|
T Consensus 254 A~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 6 4777777763 444 567788888888887 6888888888775444 5778888888888874
Q ss_pred --ChHHHHHHHHHH-HhcCCCCC-CchHHHHHHHHH
Q 006246 480 --EVEFGERLGKIL-LEMEPQNR-RCDDVAKMRKLM 511 (654)
Q Consensus 480 --~~~~a~~~~~~~-~~~~p~~~-~~~~a~~~~~~m 511 (654)
.+++|+.+++++ ++++|... .|..-...+..+
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 258899999999 89999876 565555544444
No 46
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.48 E-value=1.7e-12 Score=122.24 Aligned_cols=191 Identities=14% Similarity=0.030 Sum_probs=85.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 006246 262 ITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMY 341 (654)
Q Consensus 262 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 341 (654)
..|..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|...++.+++.. +.+...+..+...|
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~ 83 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAY 83 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 344455555555555555555555555432 2233344444444555555555555555554443 22344444455555
Q ss_pred HHc-----------CCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 006246 342 AKC-----------GRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSAC 407 (654)
Q Consensus 342 ~~~-----------g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 407 (654)
.+. |++++|...|++..+ .+...|..+...|...|++++|+..|++..+.. .+...+..+..++
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~ 161 (217)
T 2pl2_A 84 VALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELY 161 (217)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred HHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHH
Confidence 444 555555555544432 234445555555555555555555555555443 3444445555555
Q ss_pred HccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHh
Q 006246 408 AHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISS 458 (654)
Q Consensus 408 ~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 458 (654)
...|++++|+..|++..+. -+.+...+..+..++.+.|++++|++.+++
T Consensus 162 ~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 162 LSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC-------------
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 5555555555555555442 112233444444445555555555544443
No 47
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.47 E-value=1.8e-10 Score=125.70 Aligned_cols=425 Identities=10% Similarity=0.052 Sum_probs=283.2
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHhcccccCCChHHHHHHHhcCC---CCCcchHHHHHHHHHhCCC---chHHHHHHHH
Q 006246 50 KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVH---KPNVFVWNSVLRACLEHNE---PWRVISLYSE 123 (654)
Q Consensus 50 ~~~~~~~~~~g~~~~~~~~~~Li~~y~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~---~~~A~~~~~~ 123 (654)
...+...+... +.|...|..++..+.+ .+.++.|+.+|+++. ......|...+..-.+.|+ ++.+..+|++
T Consensus 52 i~~lE~~l~~n-p~d~~~W~~yi~~~~~--~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeR 128 (679)
T 4e6h_A 52 IGKLNDMIEEQ-PTDIFLYVKLLKHHVS--LKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLAR 128 (679)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHC-cCCHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHH
Confidence 33455555555 3588999999999988 899999999999987 3455678888888888888 9999999999
Q ss_pred hHhCC-CCCCcccHHHHHHHHhccCCc--------HHHHHHHHHHHHh-CC-CCC-hhhHHHHHHHHHh---------cC
Q 006246 124 MVGVD-SKPNKFTYPTVFKACSITEAD--------KEGVQVHAHVVKN-GL-CGD-VHVKSSGIQMYAC---------FG 182 (654)
Q Consensus 124 m~~~g-~~p~~~t~~~ll~~~~~~~~~--------~~a~~~~~~~~~~-g~-~~~-~~~~~~li~~y~~---------~g 182 (654)
..... ..|+...|..-+.-..+.++. +..+++|+.++.. |. .++ ...|...+..... .+
T Consensus 129 al~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~ 208 (679)
T 4e6h_A 129 CLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQ 208 (679)
T ss_dssp HTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHh
Confidence 98753 136776776666554444433 3445788877653 66 554 4677777766542 34
Q ss_pred CHHHHHHHHhcCCCC---Ch-hhHHHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHhc--
Q 006246 183 CVNKARQILDDGSKS---DV-ICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEM-- 256 (654)
Q Consensus 183 ~~~~A~~~~~~~~~~---~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-- 256 (654)
+++.++++|++...- +. ..|.....---..+. ..+.+++.+ ...+++.|...+.++
T Consensus 209 ~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e-----------------~~~~y~~Ar~~~~e~~~ 270 (679)
T 4e6h_A 209 RVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGE-----------------LSAQYMNARSLYQDWLN 270 (679)
T ss_dssp HHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHH-----------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHH-----------------hhHHHHHHHHHHHHHHH
Confidence 567788888875332 11 222221111000010 011111111 011222233333221
Q ss_pred -----CC--------------C--------CHhHHHHHHHHHHhcC-------ChHHHHHHHHHHHhCCCCCCcchHHHH
Q 006246 257 -----ND--------------K--------DEITWSAIIDGYTKDG-------YYKEALEVFNEMQRDKIKPRKFVLSCV 302 (654)
Q Consensus 257 -----~~--------------~--------~~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~p~~~t~~~l 302 (654)
.. | ....|...+.---.++ ..+.+..+|++.+..- +-+...|...
T Consensus 271 ~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~y 349 (679)
T 4e6h_A 271 ITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNM 349 (679)
T ss_dssp HTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHH
T ss_pred HHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHH
Confidence 00 0 0234555555433332 1234566788887652 3355666667
Q ss_pred HHHHHhcCChhHHH-HHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC-------------C--------
Q 006246 303 LAACASLGALDQGI-WIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM-------------K-------- 360 (654)
Q Consensus 303 l~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-------------~-------- 360 (654)
..-+...|+.+.|. ++++.+.... +.+...+-.++....+.|+++.|.++|+++.. |
T Consensus 350 a~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~ 428 (679)
T 4e6h_A 350 ANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQ 428 (679)
T ss_dssp HHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhh
Confidence 77777889999996 9999998753 55677788889999999999999999998764 2
Q ss_pred ----CHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHHcCCCCCcch
Q 006246 361 ----EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHA-GMIDRGLQALTYMQQMYGIDPEVEH 435 (654)
Q Consensus 361 ----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~-g~~~~a~~~~~~~~~~~g~~p~~~~ 435 (654)
....|-..+....+.|..+.|..+|.++.+.-..+....|...+..-.+. ++.+.|..+|+...+.+ +-+...
T Consensus 429 ~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~ 506 (679)
T 4e6h_A 429 LKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEY 506 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHH
T ss_pred hccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHH
Confidence 12368888888888899999999999998751112233443333323333 45999999999999864 334556
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCC
Q 006246 436 YGCIVDLLGRAGYLAEAEEVISSM-PMEP----NAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 436 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 499 (654)
+...++.....|+.+.|..+|++. ...| ....|...+.--.++|+.+.+..+.+++.+..|++.
T Consensus 507 w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 507 INKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 778889889999999999999987 2223 367899999999999999999999999999999976
No 48
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.45 E-value=3.3e-12 Score=120.23 Aligned_cols=194 Identities=13% Similarity=0.049 Sum_probs=143.9
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHH
Q 006246 293 KPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMI 369 (654)
Q Consensus 293 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li 369 (654)
+++...+..+...+.+.|++++|...++.+++.. +.+...+..+...|.+.|++++|...|++... .+...|..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 4566677778888888999999999998888765 45677888888888999999999998887764 3667888888
Q ss_pred HHHHHc-----------CChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHH
Q 006246 370 GGLAMH-----------GRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGC 438 (654)
Q Consensus 370 ~~~~~~-----------g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~ 438 (654)
..|... |++++|+..|++..+.. +-+...+..+...+...|++++|+..|++..+. . .+...+..
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~--~~~~~~~~ 156 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALAL-E--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C--CCHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-c--cchHHHHH
Confidence 888888 88999999998888753 224567778888888889999999999988875 4 66778888
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChHHHHHHHHHH
Q 006246 439 IVDLLGRAGYLAEAEEVISSM-PMEP-NAAVWEALLGACRKHGEVEFGERLGKIL 491 (654)
Q Consensus 439 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 491 (654)
+..+|...|++++|++.|++. ...| +...+..+...+...|++++|+..++++
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 888888999999999888876 2334 5778888888888889888888887765
No 49
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.45 E-value=5.7e-12 Score=121.61 Aligned_cols=188 Identities=13% Similarity=0.034 Sum_probs=108.5
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCC----cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhH
Q 006246 260 DEITWSAIIDGYTKDGYYKEALEVFNEMQRDK--IKPR----KFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVL 333 (654)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 333 (654)
+...|..+...|...|++++|++.|++..+.. ..|+ ...+..+...+...|++++|...+..+.+.. |+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~--- 111 (258)
T 3uq3_A 37 DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RT--- 111 (258)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC---
T ss_pred cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--ch---
Confidence 34444555555555555555555555544321 0111 2344444555555555555555555555432 11
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHcc
Q 006246 334 GTALVDMYAKCGRLDMAWKVFEDMKMK---EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHA 410 (654)
Q Consensus 334 ~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 410 (654)
...+.+.|++++|...++++... +...|..+...+...|++++|+..|+++.+.. +.+..++..+...+...
T Consensus 112 ----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 186 (258)
T 3uq3_A 112 ----ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKL 186 (258)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred ----hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh
Confidence 12344556666666666665432 34556666777777777777777777776653 23456666777777777
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC
Q 006246 411 GMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459 (654)
Q Consensus 411 g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (654)
|++++|...++.+.+. .+.+...|..+...|.+.|++++|.+.+++.
T Consensus 187 ~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 187 MSFPEAIADCNKAIEK--DPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 7777777777777663 1233556667777777777777777777665
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.44 E-value=2.6e-12 Score=122.94 Aligned_cols=190 Identities=11% Similarity=0.063 Sum_probs=127.3
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHH
Q 006246 306 CASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAI 382 (654)
Q Consensus 306 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~ 382 (654)
+...|++++|...+..+.+.. +.+..++..+...|.+.|++++|.+.|+++.. .+...|..+...|...|++++|+
T Consensus 33 ~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 111 (243)
T 2q7f_A 33 GSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAK 111 (243)
T ss_dssp ---------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHH
Confidence 333344444444444333322 22344455555556666666666666655442 35566777777777777777888
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-C-
Q 006246 383 ELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-P- 460 (654)
Q Consensus 383 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~- 460 (654)
+.|+++.+.. +.+...+..+...+...|++++|..+++++.+. .+.+...+..+...+.+.|++++|.+.++++ .
T Consensus 112 ~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 188 (243)
T 2q7f_A 112 DMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ 188 (243)
T ss_dssp HHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7777777653 335666777777788888888888888887763 2335667778888888888888888888876 2
Q ss_pred CCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCC
Q 006246 461 MEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 461 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 499 (654)
.+.+..+|..+...+...|++++|...++++++++|++.
T Consensus 189 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~ 227 (243)
T 2q7f_A 189 DPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHM 227 (243)
T ss_dssp CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCH
T ss_pred CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchH
Confidence 234678899999999999999999999999999999874
No 51
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.44 E-value=1.5e-11 Score=115.96 Aligned_cols=201 Identities=13% Similarity=0.025 Sum_probs=132.6
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 006246 261 EITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDM 340 (654)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 340 (654)
...|..+...+...|++++|++.|+++.+.. +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------------------------------------~~~~~~~~~l~~~ 51 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD------------------------------------PKNELAWLVRAEI 51 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------------------TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC------------------------------------ccchHHHHHHHHH
Confidence 4455555666666666666666666655432 1223344455555
Q ss_pred HHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHc-CChhHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHccCCHHH
Q 006246 341 YAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMH-GRADDAIELFFKMQREKMRPD-RITFACVLSACAHAGMIDR 415 (654)
Q Consensus 341 y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~ 415 (654)
|...|++++|.+.|+++.. .+..+|..+...|... |++++|+..|+++.+.+..|+ ...+..+...+...|++++
T Consensus 52 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 131 (225)
T 2vq2_A 52 YQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGL 131 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHH
Confidence 5555566666555555432 2455666677777777 777777777777776322333 4566677777777888888
Q ss_pred HHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-C-CC-CCHHHHHHHHHHHHHhCChHHHHHHHHHHH
Q 006246 416 GLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-P-ME-PNAAVWEALLGACRKHGEVEFGERLGKILL 492 (654)
Q Consensus 416 a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 492 (654)
|...++.+.+. .+.+...+..+...+.+.|++++|.+.++++ . .+ .+...|..+...+...|+.+.|...++.+.
T Consensus 132 A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 132 AEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 88888777763 2233566777778888888888888888776 2 22 456777777778888888998888888888
Q ss_pred hcCCCCC
Q 006246 493 EMEPQNR 499 (654)
Q Consensus 493 ~~~p~~~ 499 (654)
+..|+++
T Consensus 210 ~~~p~~~ 216 (225)
T 2vq2_A 210 ANFPYSE 216 (225)
T ss_dssp HHCTTCH
T ss_pred HhCCCCH
Confidence 8888864
No 52
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.43 E-value=2.1e-11 Score=117.44 Aligned_cols=194 Identities=9% Similarity=-0.074 Sum_probs=146.5
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 006246 261 EITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDM 340 (654)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 340 (654)
...|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.+..+.+.. +.+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4566777777778888888888888777653 3345566677777778888888888888777764 3356777778888
Q ss_pred HHHcCCHHHHHHHHhhcCC----C-CHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHH
Q 006246 341 YAKCGRLDMAWKVFEDMKM----K-EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDR 415 (654)
Q Consensus 341 y~~~g~~~~A~~~~~~m~~----~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 415 (654)
|...|++++|.+.|+++.. + +...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 8888888888888887765 2 45677788888888888888888888887753 2356677788888888888888
Q ss_pred HHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC
Q 006246 416 GLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459 (654)
Q Consensus 416 a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (654)
|..+++.+.+ ..+.+...+..+...+.+.|++++|.+.++++
T Consensus 194 A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 235 (252)
T 2ho1_A 194 ARQYYDLFAQ--GGGQNARSLLLGIRLAKVFEDRDTAASYGLQL 235 (252)
T ss_dssp HHHHHHHHHT--TSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hCcCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 8888888775 23345566777888888888888888888876
No 53
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.42 E-value=5.3e-12 Score=123.25 Aligned_cols=212 Identities=14% Similarity=-0.022 Sum_probs=125.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhc
Q 006246 201 CWNALIDGYLKCGDIEGAKELFKSTKD---KNTGSYNAMISGFARFGRFEEARKLFNEMND---KDEITWSAIIDGYTKD 274 (654)
Q Consensus 201 ~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 274 (654)
.|..+...|...|++++|+..|++..+ .+..++..+...|...|++++|...|++..+ .+...|..+...|.+.
T Consensus 45 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 124 (275)
T 1xnf_A 45 LLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG 124 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHh
Confidence 344445555555555555555555443 2345556666666666666666666665543 2566777777778888
Q ss_pred CChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHH
Q 006246 275 GYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVF 354 (654)
Q Consensus 275 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~ 354 (654)
|++++|+..|+++.+. .|+.......+..+...|++++|...+....... +++...+ .++..+...++.++|.+.+
T Consensus 125 g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~ 200 (275)
T 1xnf_A 125 GRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERL 200 (275)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHH
Confidence 8888888888777764 3444444445555566677777777777666654 2333333 3566666667777777777
Q ss_pred hhcCCCC-------HHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 006246 355 EDMKMKE-------VFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQAL 420 (654)
Q Consensus 355 ~~m~~~~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 420 (654)
++....+ ...|..+...|...|++++|...|+++.+. .|+. +.....++...|++++|++.+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 201 KADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 7666532 356666777777777777777777777664 2322 112233444555555555444
No 54
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.41 E-value=6.9e-11 Score=115.47 Aligned_cols=219 Identities=11% Similarity=-0.027 Sum_probs=104.6
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHhcCCC-CcchHHHHHHHHHh----cCCHHHHHHHHHhcCCC-CHhHHHHHHHHH
Q 006246 198 DVICWNALIDGYLKCGDIEGAKELFKSTKDK-NTGSYNAMISGFAR----FGRFEEARKLFNEMNDK-DEITWSAIIDGY 271 (654)
Q Consensus 198 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~ 271 (654)
++.++..+...|...|++++|+..|++..++ +...+..+...|.. .+++++|...|++..+. +...+..+...|
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~ 84 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLY 84 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4455555666666666666666666555443 23344555555555 55555555555554332 344455555555
Q ss_pred Hh----cCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHH
Q 006246 272 TK----DGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACAS----LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAK 343 (654)
Q Consensus 272 ~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 343 (654)
.. .+++++|++.|++..+.+ +...+..+...+.. .+++++|...+..+.+.+ +...+..+...|..
T Consensus 85 ~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~ 158 (273)
T 1ouv_A 85 YSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDA 158 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred hCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHc
Confidence 55 555555555555555443 33344444444444 455555555555544433 23334444444444
Q ss_pred ----cCCHHHHHHHHhhcCC-CCHHHHHHHHHHHHH----cCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHc----c
Q 006246 344 ----CGRLDMAWKVFEDMKM-KEVFTWNAMIGGLAM----HGRADDAIELFFKMQREKMRPDRITFACVLSACAH----A 410 (654)
Q Consensus 344 ----~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~ 410 (654)
.+++++|...|++..+ .+..++..+...|.. .+++++|++.|++..+.+ +...+..+...+.+ .
T Consensus 159 ~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~ 235 (273)
T 1ouv_A 159 GRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVT 235 (273)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSS
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcc
Confidence 4444444444444332 233444444444444 444444444444444432 12333334444444 4
Q ss_pred CCHHHHHHHHHHHHH
Q 006246 411 GMIDRGLQALTYMQQ 425 (654)
Q Consensus 411 g~~~~a~~~~~~~~~ 425 (654)
+++++|.++|++..+
T Consensus 236 ~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 236 RNEKQAIENFKKGCK 250 (273)
T ss_dssp CCSTTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 444444444444443
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.39 E-value=3.3e-11 Score=113.51 Aligned_cols=196 Identities=12% Similarity=0.022 Sum_probs=138.7
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHH
Q 006246 229 NTGSYNAMISGFARFGRFEEARKLFNEMND---KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAA 305 (654)
Q Consensus 229 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 305 (654)
+...+..+...+...|++++|...|+++.+ .+...|..+...|...|++++|++.|+++.... +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 456788899999999999999999998764 367789999999999999999999999998763 3355566777777
Q ss_pred HHhc-CChhHHHHHHHHHHHcCCCC-chhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhH
Q 006246 306 CASL-GALDQGIWIHDHVKRNSICV-DAVLGTALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADD 380 (654)
Q Consensus 306 ~~~~-g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~ 380 (654)
+... |++++|...+..+.+.+..| +..++..+...|.+.|++++|...|+++.. .+...|..+...+...|++++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 7777 88888888887777622222 345566666777777777777777766543 245566666666666677777
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006246 381 AIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQ 425 (654)
Q Consensus 381 A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 425 (654)
|...|+++.+.....+...+..+...+...|+.+.+..+++.+.+
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 777666666543213444555555555666666666666666654
No 56
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.39 E-value=4.1e-12 Score=132.26 Aligned_cols=266 Identities=12% Similarity=0.036 Sum_probs=168.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHhcCC--CC-c----chHHHHHHHHHhcCCHHHHHHHHHhcCCC---------CHhHH
Q 006246 201 CWNALIDGYLKCGDIEGAKELFKSTKD--KN-T----GSYNAMISGFARFGRFEEARKLFNEMNDK---------DEITW 264 (654)
Q Consensus 201 ~~~~li~~~~~~g~~~~A~~~~~~m~~--~~-~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~ 264 (654)
.+..+...+...|++++|+..|++..+ |+ . ..+..+...|...|++++|...|++..+. ....|
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 344555666777777777777766553 22 1 24555555666666666666655554321 12345
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCchhHHHHHHHHHHH
Q 006246 265 SAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNS-ICVDAVLGTALVDMYAK 343 (654)
Q Consensus 265 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~y~~ 343 (654)
..+...|...|++++|+..|++...... +.+ .+....++..+...|..
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~l~~~~~~ 178 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLAR-------------------------------QLGDRLSEGRALYNLGNVYHA 178 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------------------HHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHH-------------------------------HhhchHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555433100 000 01123345556666666
Q ss_pred cCC-----------------HHHHHHHHhhcCC-------C--CHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCC-CC
Q 006246 344 CGR-----------------LDMAWKVFEDMKM-------K--EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMR-PD 396 (654)
Q Consensus 344 ~g~-----------------~~~A~~~~~~m~~-------~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~ 396 (654)
.|+ +++|.+.|++... + ...+|..+...|...|++++|+..|++..+.... ++
T Consensus 179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence 666 6666666655432 1 2346777888888888888888888887653110 11
Q ss_pred ----HHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCC----cchHHHHHHHHHHcCCHHHHHHHHHhCC----CCCC
Q 006246 397 ----RITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPE----VEHYGCIVDLLGRAGYLAEAEEVISSMP----MEPN 464 (654)
Q Consensus 397 ----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~ 464 (654)
..++..+...+...|++++|...+++..+...-..+ ...+..+..+|.+.|++++|.+.+++.- ..++
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 226777888888899999999988887764211111 4567788888999999999999988761 1112
Q ss_pred ----HHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Q 006246 465 ----AAVWEALLGACRKHGEVEFGERLGKILLEMEPQ 497 (654)
Q Consensus 465 ----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 497 (654)
..++..+...|...|++++|...+++++++.+.
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 457888999999999999999999999998765
No 57
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.38 E-value=1.5e-10 Score=115.41 Aligned_cols=218 Identities=9% Similarity=0.055 Sum_probs=170.3
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHHHHHH-------hcCCh-------hHHHHHHHHHHHcCCCCchhHHHHHHHHHHH
Q 006246 278 KEALEVFNEMQRDKIKPRKFVLSCVLAACA-------SLGAL-------DQGIWIHDHVKRNSICVDAVLGTALVDMYAK 343 (654)
Q Consensus 278 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-------~~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 343 (654)
++|+.+|++..... +-+...|..+...+. ..|++ ++|..+++++++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 57777888777642 234445555555544 35775 8888899888874224466788889999999
Q ss_pred cCCHHHHHHHHhhcCC--C-CHH-HHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHH-ccCCHHHHHH
Q 006246 344 CGRLDMAWKVFEDMKM--K-EVF-TWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACA-HAGMIDRGLQ 418 (654)
Q Consensus 344 ~g~~~~A~~~~~~m~~--~-~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~-~~g~~~~a~~ 418 (654)
.|++++|.++|+++.. | +.. .|..++..+.+.|++++|..+|++..+.. +++...|........ ..|+.++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999998875 2 343 89999999999999999999999998864 234445544433322 3799999999
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHHhCChHHHHHHHHHHH
Q 006246 419 ALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-P---MEP--NAAVWEALLGACRKHGEVEFGERLGKILL 492 (654)
Q Consensus 419 ~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~---~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 492 (654)
+|+...+.. +.+...|..++..+.+.|++++|..+|++. . ..| ....|..++......|+.+.|..++++++
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999998853 335678899999999999999999999987 2 355 47799999999999999999999999999
Q ss_pred hcCCCCC
Q 006246 493 EMEPQNR 499 (654)
Q Consensus 493 ~~~p~~~ 499 (654)
+..|++.
T Consensus 269 ~~~p~~~ 275 (308)
T 2ond_A 269 TAFREEY 275 (308)
T ss_dssp HHTTTTT
T ss_pred HHccccc
Confidence 9999876
No 58
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.38 E-value=3.4e-11 Score=123.02 Aligned_cols=239 Identities=12% Similarity=0.066 Sum_probs=142.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCCcchHHHHHHHHHh
Q 006246 233 YNAMISGFARFGRFEEARKLFNEMND---KDEITWSAIIDGYTKDGY-YKEALEVFNEMQRDKIKPRKFVLSCVLAACAS 308 (654)
Q Consensus 233 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 308 (654)
|..+...+.+.|++++|+..|+++.. .+...|+.+...+...|+ +++|+..|++.+... +-+...|..+..++..
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~~ 178 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEW 178 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHH
Confidence 34444444444555555555554432 244556666666666664 666666666665543 2234455555556666
Q ss_pred cCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHH-cCChhHH---
Q 006246 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAM-HGRADDA--- 381 (654)
Q Consensus 309 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~-~g~~~~A--- 381 (654)
.|++++|+..++.+++.. +.+...|..+..+|.+.|++++|++.|+++.. .+...|+.+...+.. .|..++|
T Consensus 179 ~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~ 257 (382)
T 2h6f_A 179 LRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLE 257 (382)
T ss_dssp HTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHH
T ss_pred ccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHH
Confidence 666666666666666554 33556666666666677777777777766654 355667777777777 4544666
Q ss_pred --HHHHHHHhhcCCCCCHHHHHHHHHHHHccC--CHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcC---------C
Q 006246 382 --IELFFKMQREKMRPDRITFACVLSACAHAG--MIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAG---------Y 448 (654)
Q Consensus 382 --~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g--~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g---------~ 448 (654)
++.|++.++.. +-+...|..+...+...| ++++|.+.+..+ + ....+...+..++++|.+.| .
T Consensus 258 ~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~~~~~~~~ 333 (382)
T 2h6f_A 258 REVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQCDNKEDI 333 (382)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhcccccchHHH
Confidence 47777777643 224456666777777766 567777777666 2 22334556677777777764 2
Q ss_pred HHHHHHHHHhC--CCCCC-HHHHHHHHHHHHH
Q 006246 449 LAEAEEVISSM--PMEPN-AAVWEALLGACRK 477 (654)
Q Consensus 449 ~~~A~~~~~~m--~~~p~-~~~~~~ll~~~~~ 477 (654)
+++|+++++++ ...|. ...|..+...+..
T Consensus 334 ~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 334 LNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 57888888876 45553 5666666655543
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.38 E-value=6.2e-12 Score=130.34 Aligned_cols=197 Identities=9% Similarity=-0.052 Sum_probs=96.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC----cchHHHHHHHHHhcCC--------------------hhHHH
Q 006246 262 ITWSAIIDGYTKDGYYKEALEVFNEMQRDKI-KPR----KFVLSCVLAACASLGA--------------------LDQGI 316 (654)
Q Consensus 262 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~--------------------~~~a~ 316 (654)
..|..+...|...|++++|+..+++...... .++ ..++..+...+...|+ ++.|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 3455566666666666666666665543210 011 1234444445555555 55555
Q ss_pred HHHHHHHHc----CC-CCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC-----CC----HHHHHHHHHHHHHcCChhHHH
Q 006246 317 WIHDHVKRN----SI-CVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM-----KE----VFTWNAMIGGLAMHGRADDAI 382 (654)
Q Consensus 317 ~~~~~~~~~----~~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~ 382 (654)
..+....+. +. +....++..+...|...|++++|...|++... ++ ..+|..+...|...|++++|+
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 555444331 10 11123445555556666666666665555432 11 125555566666666666666
Q ss_pred HHHHHHhhcCCC-CC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCC----cchHHHHHHHHHHcCCHHHHH
Q 006246 383 ELFFKMQREKMR-PD----RITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPE----VEHYGCIVDLLGRAGYLAEAE 453 (654)
Q Consensus 383 ~l~~~m~~~g~~-p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~ 453 (654)
..+++..+.... ++ ..++..+...+...|++++|...++...+...-.++ ...+..+...|.+.|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 666655432100 01 234455555555666666666666555442111111 234445555555555555555
Q ss_pred HHHHh
Q 006246 454 EVISS 458 (654)
Q Consensus 454 ~~~~~ 458 (654)
+.+++
T Consensus 328 ~~~~~ 332 (406)
T 3sf4_A 328 HFAEK 332 (406)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 60
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.37 E-value=2e-11 Score=111.42 Aligned_cols=167 Identities=16% Similarity=0.075 Sum_probs=143.0
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 006246 330 DAVLGTALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSA 406 (654)
Q Consensus 330 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 406 (654)
++.+|..+...|.+.|++++|.+.|++..+ .+..+|..+...|.+.|++++|+..+.+..... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 567888899999999999999999998764 477889999999999999999999999988764 3356677777888
Q ss_pred HHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChHHH
Q 006246 407 CAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-PMEP-NAAVWEALLGACRKHGEVEFG 484 (654)
Q Consensus 407 ~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a 484 (654)
+...++++.+...+.+..+. .+.+...+..+..+|.+.|++++|++.|++. ...| +..+|..+...+...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 89999999999999998874 3345677888999999999999999999987 3334 688999999999999999999
Q ss_pred HHHHHHHHhcCCCCC
Q 006246 485 ERLGKILLEMEPQNR 499 (654)
Q Consensus 485 ~~~~~~~~~~~p~~~ 499 (654)
+..++++++++|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999999753
No 61
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.37 E-value=1.1e-11 Score=118.42 Aligned_cols=193 Identities=13% Similarity=0.051 Sum_probs=103.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 006246 262 ITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMY 341 (654)
Q Consensus 262 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 341 (654)
..|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...+..+.+.. +.+..++..+...|
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY 101 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence 345555555555556666666555555432 2234445555555555666666666665555543 23455555666666
Q ss_pred HHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 006246 342 AKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQ 418 (654)
Q Consensus 342 ~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 418 (654)
.+.|++++|.+.|+++.. .+...|..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|..
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHH
Confidence 666666666666665542 345566666666666666777776666666542 2245566666666666677777777
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC
Q 006246 419 ALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459 (654)
Q Consensus 419 ~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (654)
.++.+.+. .+.+...+..+..+|.+.|++++|.+.++++
T Consensus 181 ~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 219 (243)
T 2q7f_A 181 QFAAVTEQ--DPGHADAFYNAGVTYAYKENREKALEMLDKA 219 (243)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred HHHHHHHh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 77666653 2233555666666777777777777766665
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.37 E-value=1.1e-11 Score=124.63 Aligned_cols=266 Identities=11% Similarity=0.046 Sum_probs=158.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHhcCC--CC-----cchHHHHHHHHHhcCCHHHHHHHHHhcCCC---------CHhHH
Q 006246 201 CWNALIDGYLKCGDIEGAKELFKSTKD--KN-----TGSYNAMISGFARFGRFEEARKLFNEMNDK---------DEITW 264 (654)
Q Consensus 201 ~~~~li~~~~~~g~~~~A~~~~~~m~~--~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~ 264 (654)
.+......+...|++++|+..|++..+ |+ ...+..+...|...|++++|...|++..+. ....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 344445556666777777766666543 21 134455555555556665555555543310 12344
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHH
Q 006246 265 SAIIDGYTKDGYYKEALEVFNEMQRDKIK-PRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAK 343 (654)
Q Consensus 265 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 343 (654)
..+...|...|++++|+..+++....... ++. .....++..+...|..
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~l~~~~~~ 135 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-------------------------------VGEARALYNLGNVYHA 135 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-------------------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCc-------------------------------hHHHHHHHHHHHHHHH
Confidence 44555555555555555555554331100 000 0012244455555666
Q ss_pred cCC--------------------HHHHHHHHhhcCC-----C----CHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCC-
Q 006246 344 CGR--------------------LDMAWKVFEDMKM-----K----EVFTWNAMIGGLAMHGRADDAIELFFKMQREKM- 393 (654)
Q Consensus 344 ~g~--------------------~~~A~~~~~~m~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~- 393 (654)
.|+ +++|.+.+++... . ...++..+...|...|++++|+..+++..+...
T Consensus 136 ~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 215 (338)
T 3ro2_A 136 KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 215 (338)
T ss_dssp HHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 666 6666665554432 1 234667777778888888888888877764210
Q ss_pred CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCC----cchHHHHHHHHHHcCCHHHHHHHHHhC----CC
Q 006246 394 RPD----RITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPE----VEHYGCIVDLLGRAGYLAEAEEVISSM----PM 461 (654)
Q Consensus 394 ~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~ 461 (654)
.++ ..++..+...+...|++++|..++++..+...-.++ ...+..+...|...|++++|.+.+++. +.
T Consensus 216 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 216 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 011 226677777888888888888888877653221122 446777888888999999999888876 11
Q ss_pred CCC----HHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Q 006246 462 EPN----AAVWEALLGACRKHGEVEFGERLGKILLEMEPQ 497 (654)
Q Consensus 462 ~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 497 (654)
.++ ..++..+...+...|++++|...+++++++.++
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 112 557888999999999999999999999987664
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.36 E-value=1.6e-11 Score=127.32 Aligned_cols=266 Identities=13% Similarity=0.028 Sum_probs=197.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC--C-C----HhHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CcchHH
Q 006246 233 YNAMISGFARFGRFEEARKLFNEMND--K-D----EITWSAIIDGYTKDGYYKEALEVFNEMQRD----KIKP-RKFVLS 300 (654)
Q Consensus 233 ~~~li~~~~~~g~~~~A~~~~~~~~~--~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~ 300 (654)
+......+.+.|++++|...|++..+ + + ...|..+...|...|++++|+..|++.... +-.| ....+.
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 91 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 91 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 34445555566666666666665542 2 2 346777888888889999988888876542 2122 234667
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCC-----CCchhHHHHHHHHHHHcCC--------------------HHHHHHHHh
Q 006246 301 CVLAACASLGALDQGIWIHDHVKRNSI-----CVDAVLGTALVDMYAKCGR--------------------LDMAWKVFE 355 (654)
Q Consensus 301 ~ll~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~y~~~g~--------------------~~~A~~~~~ 355 (654)
.+...+...|++++|...+..+.+... .....++..+...|...|+ +++|...|+
T Consensus 92 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 171 (406)
T 3sf4_A 92 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYE 171 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 778889999999999999998876321 1124577888999999999 999998888
Q ss_pred hcCC-----C----CHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHH
Q 006246 356 DMKM-----K----EVFTWNAMIGGLAMHGRADDAIELFFKMQREKM-RPD----RITFACVLSACAHAGMIDRGLQALT 421 (654)
Q Consensus 356 ~m~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~~ 421 (654)
+... . ...+|..+...|...|++++|+..|++..+... .++ ..++..+...+...|++++|..+++
T Consensus 172 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 251 (406)
T 3sf4_A 172 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 251 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 7643 1 235788899999999999999999999875311 112 2378888889999999999999999
Q ss_pred HHHHHcCCCCC----cchHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHhCChHHHHHHHH
Q 006246 422 YMQQMYGIDPE----VEHYGCIVDLLGRAGYLAEAEEVISSM----PMEPN----AAVWEALLGACRKHGEVEFGERLGK 489 (654)
Q Consensus 422 ~~~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~ 489 (654)
+..+...-.++ ...+..+...|...|++++|.+.+++. +..++ ..++..+...+...|++++|...++
T Consensus 252 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 331 (406)
T 3sf4_A 252 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAE 331 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 98764221222 457788899999999999999999876 11122 6678899999999999999999999
Q ss_pred HHHhcCCCC
Q 006246 490 ILLEMEPQN 498 (654)
Q Consensus 490 ~~~~~~p~~ 498 (654)
+++++.+..
T Consensus 332 ~al~~~~~~ 340 (406)
T 3sf4_A 332 KHLEISREV 340 (406)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999875544
No 64
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.34 E-value=1.1e-11 Score=128.97 Aligned_cols=261 Identities=12% Similarity=0.063 Sum_probs=173.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhcC---CCCCh----hhHHHHHHHHHHcCCHHHHHHHHHhcCC---------CCcch
Q 006246 169 HVKSSGIQMYACFGCVNKARQILDDG---SKSDV----ICWNALIDGYLKCGDIEGAKELFKSTKD---------KNTGS 232 (654)
Q Consensus 169 ~~~~~li~~y~~~g~~~~A~~~~~~~---~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~---------~~~~~ 232 (654)
..+..+...+...|++++|...|++. .+.+. ..|..+...|...|++++|+..|++..+ ....+
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 34556777889999999999999885 33343 4788899999999999999999988754 13457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCC---------CHhHHHHHHHHHHhcCC-----------------hHHHHHHHHH
Q 006246 233 YNAMISGFARFGRFEEARKLFNEMNDK---------DEITWSAIIDGYTKDGY-----------------YKEALEVFNE 286 (654)
Q Consensus 233 ~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~ 286 (654)
+..+...|...|++++|...|++..+. ....|..+...|...|+ +++|++.+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 888999999999999999999886531 23467778888888888 6777776666
Q ss_pred HHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCCC-----C
Q 006246 287 MQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK-----E 361 (654)
Q Consensus 287 m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-----~ 361 (654)
..... ...++ ......++..+...|...|++++|.+.|++.... +
T Consensus 209 al~~~---------------~~~~~---------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 209 NLKLM---------------RDLGD---------------RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp HHHHH---------------HHHTC---------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHH---------------HHcCC---------------HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence 54310 00000 0011234455556666666666666666555431 1
Q ss_pred ----HHHHHHHHHHHHHcCChhHHHHHHHHHhhcCC--C---CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCC
Q 006246 362 ----VFTWNAMIGGLAMHGRADDAIELFFKMQREKM--R---PDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPE 432 (654)
Q Consensus 362 ----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~---p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~ 432 (654)
..+|..+...|...|++++|+..|++..+... . ....++..+...+...|++++|..++++..+...-.++
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 22566667777777777777777776654211 0 01345666677777777777777777776653111111
Q ss_pred ----cchHHHHHHHHHHcCCHHHHHHHHHhC
Q 006246 433 ----VEHYGCIVDLLGRAGYLAEAEEVISSM 459 (654)
Q Consensus 433 ----~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (654)
...+..+..+|.+.|++++|.+.+++.
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 335667778888888888888887765
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.34 E-value=2.1e-11 Score=122.43 Aligned_cols=260 Identities=12% Similarity=0.051 Sum_probs=170.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhcC---CCCC----hhhHHHHHHHHHHcCCHHHHHHHHHhcCC-----C----CcchH
Q 006246 170 VKSSGIQMYACFGCVNKARQILDDG---SKSD----VICWNALIDGYLKCGDIEGAKELFKSTKD-----K----NTGSY 233 (654)
Q Consensus 170 ~~~~li~~y~~~g~~~~A~~~~~~~---~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~----~~~~~ 233 (654)
.+......+...|++++|...|++. .+.+ ...|..+...|...|++++|...+++..+ + ...++
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3455667788999999999999885 3334 35788899999999999999999988753 1 24578
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC-----CC----HhHHHHHHHHHHhcCC--------------------hHHHHHHH
Q 006246 234 NAMISGFARFGRFEEARKLFNEMND-----KD----EITWSAIIDGYTKDGY--------------------YKEALEVF 284 (654)
Q Consensus 234 ~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~ 284 (654)
..+...|...|++++|...|++..+ .+ ..++..+...|...|+ +++|++.+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 8889999999999999999988653 22 3367788888888888 77777777
Q ss_pred HHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCCC----
Q 006246 285 NEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK---- 360 (654)
Q Consensus 285 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---- 360 (654)
++..... ...++ ......++..+...|...|++++|.+.|++....
T Consensus 167 ~~a~~~~---------------~~~~~---------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 216 (338)
T 3ro2_A 167 EENLSLV---------------TALGD---------------RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 216 (338)
T ss_dssp HHHHHHH---------------HHHTC---------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---------------HhcCC---------------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 6654310 00000 0001224444555555666666666665554321
Q ss_pred -----CHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCC-CC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCC
Q 006246 361 -----EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMR-PD----RITFACVLSACAHAGMIDRGLQALTYMQQMYGID 430 (654)
Q Consensus 361 -----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~ 430 (654)
...+|..+...|...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..+...-.
T Consensus 217 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 217 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 1235666666777777777777777666542100 11 3355666667777777777777777665431111
Q ss_pred CC----cchHHHHHHHHHHcCCHHHHHHHHHhC
Q 006246 431 PE----VEHYGCIVDLLGRAGYLAEAEEVISSM 459 (654)
Q Consensus 431 p~----~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (654)
.+ ...+..+...|.+.|++++|.+.+++.
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 11 335666777777888888888777764
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.34 E-value=2.3e-11 Score=125.38 Aligned_cols=230 Identities=8% Similarity=-0.051 Sum_probs=168.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCC-CCC----cchHHHHHHHHHhcCChhHHHHHHHHHHHcC--C----CCchhHHH
Q 006246 267 IIDGYTKDGYYKEALEVFNEMQRDKI-KPR----KFVLSCVLAACASLGALDQGIWIHDHVKRNS--I----CVDAVLGT 335 (654)
Q Consensus 267 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~----~~~~~~~~ 335 (654)
....+...|++++|+..|++....-. .++ ..++..+...+...|+++.|...+..+.+.. . .....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 44556677777777777777765310 122 2456666667777777777777777766531 1 11245677
Q ss_pred HHHHHHHHcCCHHHHHHHHhhcCC-----CC----HHHHHHHHHHHHHcCChhHHHHHHHHHhhc----CCCC-CHHHHH
Q 006246 336 ALVDMYAKCGRLDMAWKVFEDMKM-----KE----VFTWNAMIGGLAMHGRADDAIELFFKMQRE----KMRP-DRITFA 401 (654)
Q Consensus 336 ~li~~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~ 401 (654)
.+...|...|++++|.+.|++... .+ ..++..+...|...|++++|++.|++..+. +..| ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 788889999999999888887653 11 247888999999999999999999998772 3323 345788
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHHcCCCCC---cchHHHHHHHHHHcCC---HHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 006246 402 CVLSACAHAGMIDRGLQALTYMQQMYGIDPE---VEHYGCIVDLLGRAGY---LAEAEEVISSMPMEPN-AAVWEALLGA 474 (654)
Q Consensus 402 ~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~---~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~-~~~~~~ll~~ 474 (654)
.+...+...|++++|...+++..+...-.++ ...+..+...|...|+ +++|+.++++.+..|+ ...+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 8899999999999999999988764211112 2235678888889999 9999999999865443 4577889999
Q ss_pred HHHhCChHHHHHHHHHHHhcCC
Q 006246 475 CRKHGEVEFGERLGKILLEMEP 496 (654)
Q Consensus 475 ~~~~g~~~~a~~~~~~~~~~~p 496 (654)
|...|++++|...+++++++..
T Consensus 349 y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999988543
No 67
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.29 E-value=4.4e-11 Score=118.92 Aligned_cols=235 Identities=13% Similarity=0.069 Sum_probs=133.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhC-------CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHc------C-CC
Q 006246 263 TWSAIIDGYTKDGYYKEALEVFNEMQRD-------KIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRN------S-IC 328 (654)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~------~-~~ 328 (654)
+|..+...|...|++++|+.+|+++.+. ..+.....+..+...+...|++++|...+..+.+. + .+
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 4445555555555555555555555431 11112233444445555555555555555555442 1 12
Q ss_pred CchhHHHHHHHHHHHcCCHHHHHHHHhhcCCC-----------CHHHHHHHHHHHHHcCChhHHHHHHHHHhhc------
Q 006246 329 VDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK-----------EVFTWNAMIGGLAMHGRADDAIELFFKMQRE------ 391 (654)
Q Consensus 329 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------ 391 (654)
....++..+...|...|++++|...|+++... ...+|..+...|...|++++|+++|+++.+.
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 188 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG 188 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence 23445566666777777777777766655421 2346777777788888888888888877653
Q ss_pred CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHHc------CCCCCcchHHH-------HHHHHHHcCCHHHHHHHHH
Q 006246 392 KMRPD-RITFACVLSACAHAGMIDRGLQALTYMQQMY------GIDPEVEHYGC-------IVDLLGRAGYLAEAEEVIS 457 (654)
Q Consensus 392 g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~------g~~p~~~~~~~-------li~~~~~~g~~~~A~~~~~ 457 (654)
+..|+ ..++..+...+...|++++|..+++++.+.. ...+....... +...+...+.+.+|...++
T Consensus 189 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 268 (311)
T 3nf1_A 189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYK 268 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC----
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHh
Confidence 22332 3367777778888888888888888877521 12222222222 2223334445555555565
Q ss_pred hCC-CCC-CHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Q 006246 458 SMP-MEP-NAAVWEALLGACRKHGEVEFGERLGKILLEMEPQ 497 (654)
Q Consensus 458 ~m~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 497 (654)
... ..| +..+|..+...|...|++++|...+++++++.|+
T Consensus 269 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 269 ACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -----CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred hcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 553 233 4678999999999999999999999999998775
No 68
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.26 E-value=2.3e-09 Score=110.12 Aligned_cols=228 Identities=10% Similarity=-0.023 Sum_probs=164.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCC-CCC----cchHHHHHHHHHhcCChhHHHHHHHHHHHcCC-----C-CchhHH
Q 006246 266 AIIDGYTKDGYYKEALEVFNEMQRDKI-KPR----KFVLSCVLAACASLGALDQGIWIHDHVKRNSI-----C-VDAVLG 334 (654)
Q Consensus 266 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----~-~~~~~~ 334 (654)
.....+...|++++|+..|++...... .++ ..++..+...+...|+++.|...+..+.+... . ....++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 334455677777777777777765311 122 23555666677777777777777777665211 1 124566
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhcCC-----C----CHHHHHHHHHHHHHcCChhHHHHHHHHHhh-----cCCCCCHHHH
Q 006246 335 TALVDMYAKCGRLDMAWKVFEDMKM-----K----EVFTWNAMIGGLAMHGRADDAIELFFKMQR-----EKMRPDRITF 400 (654)
Q Consensus 335 ~~li~~y~~~g~~~~A~~~~~~m~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~ 400 (654)
+.+...|...|++++|.+.|++... . ...+++.+...|...|++++|++.|++..+ .. +....++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHH
Confidence 7788888899999998888877653 1 235788889999999999999999999876 32 2235678
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHcCCCCC---cchHHHHHHHHHHcCC---HHHHHHHHHhCCCCCC-HHHHHHHHH
Q 006246 401 ACVLSACAHAGMIDRGLQALTYMQQMYGIDPE---VEHYGCIVDLLGRAGY---LAEAEEVISSMPMEPN-AAVWEALLG 473 (654)
Q Consensus 401 ~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~---~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~-~~~~~~ll~ 473 (654)
..+...+.+.|++++|..++++..+...-.++ ...+..+...|...|+ +.+|+..+++....|+ ...+..+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 88889999999999999999999885332223 2245556666777888 9999999998764443 456678899
Q ss_pred HHHHhCChHHHHHHHHHHHhc
Q 006246 474 ACRKHGEVEFGERLGKILLEM 494 (654)
Q Consensus 474 ~~~~~g~~~~a~~~~~~~~~~ 494 (654)
.|...|++++|...+++++++
T Consensus 345 ~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999988764
No 69
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.24 E-value=4.7e-10 Score=101.75 Aligned_cols=166 Identities=14% Similarity=-0.010 Sum_probs=143.7
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 006246 331 AVLGTALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSAC 407 (654)
Q Consensus 331 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 407 (654)
...+..+...|...|++++|...|+++.. .+...|..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34566788889999999999999999876 367889999999999999999999999998863 34677888889999
Q ss_pred HccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHhCChHHHH
Q 006246 408 AHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-P-MEPNAAVWEALLGACRKHGEVEFGE 485 (654)
Q Consensus 408 ~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~g~~~~a~ 485 (654)
...|++++|.++++++.+. .+.+...+..+...+...|++++|.+.++++ . .+.+..+|..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999874 3445678888999999999999999999987 2 2346889999999999999999999
Q ss_pred HHHHHHHhcCCCCC
Q 006246 486 RLGKILLEMEPQNR 499 (654)
Q Consensus 486 ~~~~~~~~~~p~~~ 499 (654)
..+++++++.|++.
T Consensus 165 ~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 165 PHFKKANELDEGAS 178 (186)
T ss_dssp HHHHHHHHHHHCCC
T ss_pred HHHHHHHHcCCCch
Confidence 99999999988864
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.24 E-value=4.4e-10 Score=115.78 Aligned_cols=160 Identities=9% Similarity=-0.013 Sum_probs=90.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----cchHHHHHHHHHhcCChhHHHHHHHHHHHc----CC-CCchh
Q 006246 263 TWSAIIDGYTKDGYYKEALEVFNEMQRDKIK-PR----KFVLSCVLAACASLGALDQGIWIHDHVKRN----SI-CVDAV 332 (654)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~ 332 (654)
+++.+...|...|++++|++.|++..+.... ++ ..++..+...+...|++++|...+..+.+. +. +....
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 4555555666666666666666555432100 11 124555555666666666666666665551 22 33345
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhcCCC-----C---HHHHHHHHHHHHHcCC---hhHHHHHHHHHhhcCCCCC-HHHH
Q 006246 333 LGTALVDMYAKCGRLDMAWKVFEDMKMK-----E---VFTWNAMIGGLAMHGR---ADDAIELFFKMQREKMRPD-RITF 400 (654)
Q Consensus 333 ~~~~li~~y~~~g~~~~A~~~~~~m~~~-----~---~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~-~~t~ 400 (654)
++..+...|.+.|++++|...|++...- + ...++.+...|...|+ .++|+.++++. +..|+ ...+
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~ 342 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFA 342 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHH
Confidence 5666666677777777776666655431 1 1224556666666666 66666666655 22222 2355
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHH
Q 006246 401 ACVLSACAHAGMIDRGLQALTYMQQ 425 (654)
Q Consensus 401 ~~ll~~~~~~g~~~~a~~~~~~~~~ 425 (654)
..+...|...|++++|..++++..+
T Consensus 343 ~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 343 IDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5666677777777777777777665
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.21 E-value=3.5e-09 Score=105.33 Aligned_cols=208 Identities=13% Similarity=0.073 Sum_probs=141.0
Q ss_pred HHHHHHHHhcCC---CCcchHHHHHHHHH-------hcCCH-------HHHHHHHHhcCC---C-CHhHHHHHHHHHHhc
Q 006246 216 EGAKELFKSTKD---KNTGSYNAMISGFA-------RFGRF-------EEARKLFNEMND---K-DEITWSAIIDGYTKD 274 (654)
Q Consensus 216 ~~A~~~~~~m~~---~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~~~ 274 (654)
++|...|++... .+...|..++..+. +.|++ ++|..+|++... | +...|..++..+.+.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 455556655544 24445555555544 34664 777777776554 2 455777788888888
Q ss_pred CChHHHHHHHHHHHhCCCCCCcc--hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHH-HcCCHHHHH
Q 006246 275 GYYKEALEVFNEMQRDKIKPRKF--VLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYA-KCGRLDMAW 351 (654)
Q Consensus 275 g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~-~~g~~~~A~ 351 (654)
|++++|.++|++..+. .|+.. .|..+...+.+.|++++|..+|+.+++... .+..+|...+.... ..|+.++|.
T Consensus 113 ~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred CCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHH
Confidence 8888888888887763 45432 567777777777888888888888777542 33444444333322 258888888
Q ss_pred HHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcC-CCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006246 352 KVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREK-MRPD--RITFACVLSACAHAGMIDRGLQALTYMQQ 425 (654)
Q Consensus 352 ~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 425 (654)
++|++..+ .+...|..++..+.+.|+.++|..+|++..+.. +.|+ ...|..++......|+.+.|..+++++.+
T Consensus 190 ~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 190 KIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88887754 366778888888888888888888888888753 3543 45677777777788888888888888877
Q ss_pred H
Q 006246 426 M 426 (654)
Q Consensus 426 ~ 426 (654)
.
T Consensus 270 ~ 270 (308)
T 2ond_A 270 A 270 (308)
T ss_dssp H
T ss_pred H
Confidence 5
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.19 E-value=3.7e-10 Score=119.66 Aligned_cols=188 Identities=12% Similarity=-0.048 Sum_probs=100.2
Q ss_pred chHHHHHHHHHhcCCh-hHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC--CCHHHHHHHHHHHH
Q 006246 297 FVLSCVLAACASLGAL-DQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM--KEVFTWNAMIGGLA 373 (654)
Q Consensus 297 ~t~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~ 373 (654)
..+..+..++...|++ ++|.+.+..+++.. +.+...+..+...|.+.|++++|.+.|++... |+...|..+...|.
T Consensus 103 ~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~ 181 (474)
T 4abn_A 103 QALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLR 181 (474)
T ss_dssp HHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 3344444444444454 55555554444433 22344555555555555555555555555443 33445555555555
Q ss_pred Hc---------CChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHcc--------CCHHHHHHHHHHHHHHcCCCC----C
Q 006246 374 MH---------GRADDAIELFFKMQREKMRPDRITFACVLSACAHA--------GMIDRGLQALTYMQQMYGIDP----E 432 (654)
Q Consensus 374 ~~---------g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~--------g~~~~a~~~~~~~~~~~g~~p----~ 432 (654)
.. |++++|++.|++..+.. +-+...|..+..++... |++++|...|++..+. .| +
T Consensus 182 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~ 257 (474)
T 4abn_A 182 QLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV---DRKASSN 257 (474)
T ss_dssp TCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH---CGGGGGC
T ss_pred HhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh---CCCcccC
Confidence 55 56666666666665542 22344555555555555 5666666666666552 23 4
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChHHHHHHHH
Q 006246 433 VEHYGCIVDLLGRAGYLAEAEEVISSM-PMEP-NAAVWEALLGACRKHGEVEFGERLGK 489 (654)
Q Consensus 433 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~ 489 (654)
...|..+..+|.+.|++++|++.|++. ...| +...|..+...+...|++++|...++
T Consensus 258 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 258 PDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666666666666666666666655 2223 35556666666666666666655443
No 73
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.18 E-value=2.3e-09 Score=97.53 Aligned_cols=159 Identities=13% Similarity=0.023 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 006246 263 TWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYA 342 (654)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 342 (654)
.|..+...|.+.|++++|++.|++.++.. +-+...+..+..++.+.|++++|...+..+.... +.+...+..+...+.
T Consensus 7 iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 84 (184)
T 3vtx_A 7 IYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSANF 84 (184)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHHH
Confidence 34444444444444444444444444332 1122233333333444444444444444333332 112233333333444
Q ss_pred HcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 006246 343 KCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQA 419 (654)
Q Consensus 343 ~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 419 (654)
..++++.|...+++... .+...|..+...|.+.|++++|++.|++..+.. +.+..++..+..++.+.|++++|.+.
T Consensus 85 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 163 (184)
T 3vtx_A 85 MIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVKY 163 (184)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 44444444444433321 233344444444444444444444444444331 11233344444444444444444444
Q ss_pred HHHHH
Q 006246 420 LTYMQ 424 (654)
Q Consensus 420 ~~~~~ 424 (654)
|++..
T Consensus 164 ~~~al 168 (184)
T 3vtx_A 164 FKKAL 168 (184)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 74
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.16 E-value=6.8e-08 Score=105.39 Aligned_cols=406 Identities=8% Similarity=-0.042 Sum_probs=242.3
Q ss_pred CcchHHHHHhhhhhcCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHhcccccCCC---hHHHHHHHhcCC--C---CCc
Q 006246 27 SEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSN---FELALKVFNSVH--K---PNV 98 (654)
Q Consensus 27 ~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~~~g~---~~~A~~~f~~~~--~---~~~ 98 (654)
|..++..++ ..+...+.+..++.++++++.. ++.....|..-+..-.+ .|+ ++.+..+|++.. - |++
T Consensus 65 d~~~W~~yi--~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~--~~~~~~~~~v~~lfeRal~~~~~~~sv 139 (679)
T 4e6h_A 65 DIFLYVKLL--KHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFD--KMEELDAAVIEPVLARCLSKELGNNDL 139 (679)
T ss_dssp CHHHHHHHH--HHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHT--C--CCCHHHHHHHHHHHTCSSSCCCCH
T ss_pred CHHHHHHHH--HHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHh--hCCcchHHHHHHHHHHHHHhcCCCCCH
Confidence 444455554 3566778999999999999987 34567788888888888 888 999999999876 3 788
Q ss_pred chHHHHHHHHHhCCCc--------hHHHHHHHHhHh-CCC-CCCc-ccHHHHHHHHh---------ccCCcHHHHHHHHH
Q 006246 99 FVWNSVLRACLEHNEP--------WRVISLYSEMVG-VDS-KPNK-FTYPTVFKACS---------ITEADKEGVQVHAH 158 (654)
Q Consensus 99 ~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~p~~-~t~~~ll~~~~---------~~~~~~~a~~~~~~ 158 (654)
..|...+....+.++. +...++|+..+. .|. .|+. ..|...+.... ..++.+.++.+|..
T Consensus 140 ~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~r 219 (679)
T 4e6h_A 140 SLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKT 219 (679)
T ss_dssp HHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHH
Confidence 8899888766554443 234477877654 466 5654 45555554432 12346778899998
Q ss_pred HHHhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhc-------CC----
Q 006246 159 VVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST-------KD---- 227 (654)
Q Consensus 159 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~---- 227 (654)
++......-..+|......--..+. ..+.+++.+ ....++.|...+.++ .+
T Consensus 220 aL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e-----------------~~~~y~~Ar~~~~e~~~~~~~l~r~~p~ 281 (679)
T 4e6h_A 220 LLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGE-----------------LSAQYMNARSLYQDWLNITKGLKRNLPI 281 (679)
T ss_dssp HTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHH-----------------HHHHHHHHHHHHHHHHHHTTTCCCCCCS
T ss_pred HHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHhHhhcccc
Confidence 8853211112233222221111011 001111110 001112222222110 00
Q ss_pred ----------C--C------cchHHHHHHHHHhcC-------CHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHH
Q 006246 228 ----------K--N------TGSYNAMISGFARFG-------RFEEARKLFNEMND---KDEITWSAIIDGYTKDGYYKE 279 (654)
Q Consensus 228 ----------~--~------~~~~~~li~~~~~~g-------~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 279 (654)
| + ...|...+.---..+ ..+.+..+|++... .+...|...+.-+.+.|+.++
T Consensus 282 ~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~ 361 (679)
T 4e6h_A 282 TLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDST 361 (679)
T ss_dssp SSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTT
T ss_pred ccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHH
Confidence 0 0 012333332222211 12233445655543 256677777777778888888
Q ss_pred HH-HHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcC----------CCC-----------chhHHHHH
Q 006246 280 AL-EVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNS----------ICV-----------DAVLGTAL 337 (654)
Q Consensus 280 A~-~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~----------~~~-----------~~~~~~~l 337 (654)
|. ++|++.... ++.+...+...+......|+++.|.++|+.+++.. .+. ...+|...
T Consensus 362 a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y 440 (679)
T 4e6h_A 362 VITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVY 440 (679)
T ss_dssp HHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHH
Confidence 86 888888764 23333344556666777888888888888877631 111 23467777
Q ss_pred HHHHHHcCCHHHHHHHHhhcCCC----CHHHHHHHHHHHHHc-CChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCC
Q 006246 338 VDMYAKCGRLDMAWKVFEDMKMK----EVFTWNAMIGGLAMH-GRADDAIELFFKMQREKMRPDRITFACVLSACAHAGM 412 (654)
Q Consensus 338 i~~y~~~g~~~~A~~~~~~m~~~----~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 412 (654)
+....+.|.++.|+++|.+..+. ....|-..+..-.+. ++.+.|..+|+..++. .+-+..-+...+......|+
T Consensus 441 ~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~ 519 (679)
T 4e6h_A 441 MNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNE 519 (679)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCC
Confidence 88777888888898888887543 222333222222233 4478888898888876 33345555677777777888
Q ss_pred HHHHHHHHHHHHHHcCCCC---CcchHHHHHHHHHHcCCHHHHHHHHHhC
Q 006246 413 IDRGLQALTYMQQMYGIDP---EVEHYGCIVDLLGRAGYLAEAEEVISSM 459 (654)
Q Consensus 413 ~~~a~~~~~~~~~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (654)
.+.|+.+|++.... ..+ ....|..+++.-.+.|+.+.+.++.+++
T Consensus 520 ~~~AR~lferal~~--~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~ 567 (679)
T 4e6h_A 520 ESQVKSLFESSIDK--ISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRF 567 (679)
T ss_dssp HHHHHHHHHHHTTT--SSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999888763 221 2456777788788889988888888887
No 75
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.16 E-value=5.1e-10 Score=118.62 Aligned_cols=209 Identities=8% Similarity=-0.051 Sum_probs=155.4
Q ss_pred HHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCCh-HHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 006246 246 FEEARKLFNEMND---KDEITWSAIIDGYTKDGYY-KEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDH 321 (654)
Q Consensus 246 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 321 (654)
++++...++.... .+...|..+...|...|++ ++|++.|++..+.. +-+...+..+..++...|++++|.+.++.
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444445544332 2556677777777777777 77777777776653 22455666777777777777777777777
Q ss_pred HHHcCCCCchhHHHHHHHHHHHc---------CCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHc--------CChhHH
Q 006246 322 VKRNSICVDAVLGTALVDMYAKC---------GRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMH--------GRADDA 381 (654)
Q Consensus 322 ~~~~~~~~~~~~~~~li~~y~~~---------g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~--------g~~~~A 381 (654)
+.+.. |+...+..+...|... |++++|.+.|++... .+...|..+...|... |++++|
T Consensus 163 al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 163 ALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 77654 4456777777777777 888888888887654 3677888888888888 889999
Q ss_pred HHHHHHHhhcCCC--CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC
Q 006246 382 IELFFKMQREKMR--PDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459 (654)
Q Consensus 382 ~~l~~~m~~~g~~--p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (654)
++.|++..+.... -+...|..+..++...|++++|.+.|++..+. -+.+...+..+..++...|++++|++.+.++
T Consensus 241 ~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 241 LSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999886310 36778999999999999999999999999874 2234557888889999999999999877766
No 76
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.15 E-value=2.3e-09 Score=101.44 Aligned_cols=194 Identities=8% Similarity=-0.035 Sum_probs=138.1
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHH
Q 006246 295 RKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGG 371 (654)
Q Consensus 295 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~ 371 (654)
|...+......+...|++++|...+..+++...+++...+..+...|.+.|++++|.+.|++... .+...|..+...
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 45667777778888888888888888888876546666666688888888888888888887764 255678888888
Q ss_pred HHHcCChhHHHHHHHHHhhcCCCCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCC---cchHHHHHH
Q 006246 372 LAMHGRADDAIELFFKMQREKMRPDR-------ITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPE---VEHYGCIVD 441 (654)
Q Consensus 372 ~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~---~~~~~~li~ 441 (654)
|...|++++|+..|++..+.. +.+. ..|..+...+...|++++|.+.|+++.+ +.|+ ...|..+..
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHHH
Confidence 888888888888888887753 1233 3466667777788888888888888764 3554 456667777
Q ss_pred HHHHcCCH--HHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCC
Q 006246 442 LLGRAGYL--AEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 442 ~~~~~g~~--~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 499 (654)
+|...|+. ++|..+ . ..+...+.... ....+.+++|...++++++++|++.
T Consensus 162 ~~~~~~~~~~~~a~~~----~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~ 214 (228)
T 4i17_A 162 LFYNNGADVLRKATPL----A-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRT 214 (228)
T ss_dssp HHHHHHHHHHHHHGGG----T-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHHhc----c-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCH
Confidence 77665543 222211 1 12333343332 3445668999999999999999984
No 77
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.12 E-value=2.9e-10 Score=112.92 Aligned_cols=158 Identities=20% Similarity=0.203 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHhcCC--------C---CcchHHHHHHHHHhcCCHHHHHHHHHhcCC-------C---
Q 006246 201 CWNALIDGYLKCGDIEGAKELFKSTKD--------K---NTGSYNAMISGFARFGRFEEARKLFNEMND-------K--- 259 (654)
Q Consensus 201 ~~~~li~~~~~~g~~~~A~~~~~~m~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~--- 259 (654)
+|..+...|...|++++|+.+|+++.+ . ...++..+...|...|++++|...|++... +
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 344444455555555555555444332 0 122344444444455555555444444321 1
Q ss_pred -CHhHHHHHHHHHHhcCChHHHHHHHHHHHhC------CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHHc------
Q 006246 260 -DEITWSAIIDGYTKDGYYKEALEVFNEMQRD------KIKP-RKFVLSCVLAACASLGALDQGIWIHDHVKRN------ 325 (654)
Q Consensus 260 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~------ 325 (654)
....|..+...|...|++++|+..|+++.+. +-.| ....+..+...+...|++++|.+.+..+.+.
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 188 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG 188 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence 2335556666666666666666666665542 1111 1223444445555555555555555555443
Q ss_pred C-CCCchhHHHHHHHHHHHcCCHHHHHHHHhhcC
Q 006246 326 S-ICVDAVLGTALVDMYAKCGRLDMAWKVFEDMK 358 (654)
Q Consensus 326 ~-~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 358 (654)
+ .+....++..+...|.+.|++++|.+.|+++.
T Consensus 189 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 222 (311)
T 3nf1_A 189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1 11123344455555555555555555555443
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.11 E-value=7.9e-08 Score=98.26 Aligned_cols=163 Identities=10% Similarity=-0.040 Sum_probs=84.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC----CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCc-hhHHH--
Q 006246 263 TWSAIIDGYTKDGYYKEALEVFNEMQRDKIKP----RKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVD-AVLGT-- 335 (654)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~-- 335 (654)
.+..+...+...|++++|...+++........ ...++..+...+...|++++|...++...+....++ ...+.
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 216 (373)
T 1hz4_A 137 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 216 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHH
Confidence 45556667777778888777777766532111 112344455556666677777666666654311111 01111
Q ss_pred ---HHHHHHHHcCCHHHHHHHHhhcCCCC-------HHHHHHHHHHHHHcCChhHHHHHHHHHhhc----CCCCCHH-HH
Q 006246 336 ---ALVDMYAKCGRLDMAWKVFEDMKMKE-------VFTWNAMIGGLAMHGRADDAIELFFKMQRE----KMRPDRI-TF 400 (654)
Q Consensus 336 ---~li~~y~~~g~~~~A~~~~~~m~~~~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~~-t~ 400 (654)
..+..+...|++++|...+++....+ ...+..+...+...|++++|...+++.... |..++.. .+
T Consensus 217 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 296 (373)
T 1hz4_A 217 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL 296 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 22333556677777777666655421 123455556666666666666666655432 1111111 33
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHH
Q 006246 401 ACVLSACAHAGMIDRGLQALTYMQQ 425 (654)
Q Consensus 401 ~~ll~~~~~~g~~~~a~~~~~~~~~ 425 (654)
..+..++...|+.++|...++....
T Consensus 297 ~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 297 LLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3344445555555555555554443
No 79
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.10 E-value=6.5e-10 Score=122.77 Aligned_cols=163 Identities=13% Similarity=0.132 Sum_probs=139.3
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCC-CHHHHHHHHH
Q 006246 330 DAVLGTALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRP-DRITFACVLS 405 (654)
Q Consensus 330 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~ 405 (654)
+...++.|...|.+.|++++|++.|++..+ .+..+|+.+...|.+.|++++|++.|++.++. .| +...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 467788889999999999999999988764 36788999999999999999999999999886 34 4668889999
Q ss_pred HHHccCCHHHHHHHHHHHHHHcCCCCC-cchHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChH
Q 006246 406 ACAHAGMIDRGLQALTYMQQMYGIDPE-VEHYGCIVDLLGRAGYLAEAEEVISSM-PMEP-NAAVWEALLGACRKHGEVE 482 (654)
Q Consensus 406 ~~~~~g~~~~a~~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~ 482 (654)
++...|++++|++.|++..+. .|+ ...|..+..+|.+.|++++|++.|++. ...| +...|..+...+...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 999999999999999998874 444 678899999999999999999999987 4445 5888999999999999999
Q ss_pred HHHHHHHHHHhcCCC
Q 006246 483 FGERLGKILLEMEPQ 497 (654)
Q Consensus 483 ~a~~~~~~~~~~~p~ 497 (654)
+|.+.+++++++.|+
T Consensus 163 ~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 163 DYDERMKKLVSIVAD 177 (723)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChh
Confidence 999999999986554
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.08 E-value=5.5e-09 Score=107.25 Aligned_cols=189 Identities=12% Similarity=0.087 Sum_probs=105.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHhcCC-----CC-----cchHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----H
Q 006246 201 CWNALIDGYLKCGDIEGAKELFKSTKD-----KN-----TGSYNAMISGFARFGRFEEARKLFNEMND-----KD----E 261 (654)
Q Consensus 201 ~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~ 261 (654)
++..+...|...|+++.|+..+++..+ ++ ..+++.+...|...|++++|.+.|++..+ .+ .
T Consensus 143 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 222 (378)
T 3q15_A 143 FHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIA 222 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 344445555555555555555544432 11 22455566666666666666666655432 11 3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCC----CCchh
Q 006246 262 ITWSAIIDGYTKDGYYKEALEVFNEMQR-----DKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSI----CVDAV 332 (654)
Q Consensus 262 ~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~ 332 (654)
.+++.+...|...|++++|++.|++... .. +....++..+...+.+.|++++|...++...+... +....
T Consensus 223 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 301 (378)
T 3q15_A 223 ISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKE 301 (378)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3567777777788888888888777765 22 22244555566666677777777777776665321 11223
Q ss_pred HHHHHHHHHHHcCC---HHHHHHHHhhcCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q 006246 333 LGTALVDMYAKCGR---LDMAWKVFEDMKMK--EVFTWNAMIGGLAMHGRADDAIELFFKMQR 390 (654)
Q Consensus 333 ~~~~li~~y~~~g~---~~~A~~~~~~m~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 390 (654)
.+..+...|...|+ +++|...+++.... ....+..+...|...|++++|...|++..+
T Consensus 302 ~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 302 LFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34445555555566 66666666654331 123445566666666666666666666543
No 81
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.07 E-value=1.3e-08 Score=104.11 Aligned_cols=260 Identities=11% Similarity=0.014 Sum_probs=113.4
Q ss_pred HHHHHHHcCCHHHHHHHHHhcCC--C--Ccc----hHHHHHHHHHhcCCHHHHHHHHHhcCC-----CCH----hHHHHH
Q 006246 205 LIDGYLKCGDIEGAKELFKSTKD--K--NTG----SYNAMISGFARFGRFEEARKLFNEMND-----KDE----ITWSAI 267 (654)
Q Consensus 205 li~~~~~~g~~~~A~~~~~~m~~--~--~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~l 267 (654)
....+...|++++|...+++... + +.. +++.+...+...|++++|...+++... .+. .+++.+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 33445566777777776655432 1 111 234444555555666666555555432 111 123444
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC----CCC--CC-cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 006246 268 IDGYTKDGYYKEALEVFNEMQRD----KIK--PR-KFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDM 340 (654)
Q Consensus 268 i~~~~~~g~~~~A~~~~~~m~~~----g~~--p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 340 (654)
...+...|++++|...+++.... +.. |. ...+..+...+...|++++|...+....+.......
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--------- 170 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP--------- 170 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG---------
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCc---------
Confidence 45555555555555555554431 111 11 112223333444444444444444444432211000
Q ss_pred HHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCH-HHHH-----HHHHHHHccCCHH
Q 006246 341 YAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDR-ITFA-----CVLSACAHAGMID 414 (654)
Q Consensus 341 y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~-----~ll~~~~~~g~~~ 414 (654)
.....+|..+...+...|++++|...+++.....-.++. ..+. ..+..+...|+++
T Consensus 171 ------------------~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 232 (373)
T 1hz4_A 171 ------------------QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKA 232 (373)
T ss_dssp ------------------GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHH
Confidence 001223444445555555555555555554432111110 0111 1112244555555
Q ss_pred HHHHHHHHHHHHcCCCCC-----cchHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCCH-HHHHHHHHHHHHhCCh
Q 006246 415 RGLQALTYMQQMYGIDPE-----VEHYGCIVDLLGRAGYLAEAEEVISSM-------PMEPNA-AVWEALLGACRKHGEV 481 (654)
Q Consensus 415 ~a~~~~~~~~~~~g~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~-~~~~~ll~~~~~~g~~ 481 (654)
+|...++..... .|. ...+..+..++...|++++|.+.+++. +..++. .++..+..++...|+.
T Consensus 233 ~A~~~~~~a~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 309 (373)
T 1hz4_A 233 AAANWLRHTAKP---EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRK 309 (373)
T ss_dssp HHHHHHHHSCCC---CCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhCCCC---CCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCH
Confidence 555555544321 111 012334455555556666655555543 111111 2444455556666666
Q ss_pred HHHHHHHHHHHhc
Q 006246 482 EFGERLGKILLEM 494 (654)
Q Consensus 482 ~~a~~~~~~~~~~ 494 (654)
++|...+++++++
T Consensus 310 ~~A~~~l~~al~~ 322 (373)
T 1hz4_A 310 SDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665543
No 82
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.07 E-value=4e-09 Score=104.03 Aligned_cols=167 Identities=9% Similarity=-0.086 Sum_probs=112.5
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHhhcCCC-----C----HHHHHHHHHHHHHc-CChhHHHHHHHHHhhcCCCC-C----
Q 006246 332 VLGTALVDMYAKCGRLDMAWKVFEDMKMK-----E----VFTWNAMIGGLAMH-GRADDAIELFFKMQREKMRP-D---- 396 (654)
Q Consensus 332 ~~~~~li~~y~~~g~~~~A~~~~~~m~~~-----~----~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p-~---- 396 (654)
.+++.+..+|.+.|++++|...|++...- + ..+|+.+...|... |++++|+..|++..+..... +
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence 45556666666666666666666655431 1 34677888888886 99999999988887631110 1
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcc-----hHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-----
Q 006246 397 RITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVE-----HYGCIVDLLGRAGYLAEAEEVISSM-PMEPNA----- 465 (654)
Q Consensus 397 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~-----~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----- 465 (654)
..++..+...+...|++++|+..|++..+...-.+... .|..+..++...|++++|...+++. .+.|+.
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 237 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRE 237 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH
Confidence 34677888889999999999999999887421112211 4677788888999999999999887 344432
Q ss_pred -HHHHHHHHHHH--HhCChHHHHHHHHHHHhcCCCC
Q 006246 466 -AVWEALLGACR--KHGEVEFGERLGKILLEMEPQN 498 (654)
Q Consensus 466 -~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~ 498 (654)
..+..++.++. ..+++++|+..|++++.++|..
T Consensus 238 ~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 238 SNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 23445566664 3467888888888888877754
No 83
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.04 E-value=1.7e-08 Score=91.35 Aligned_cols=155 Identities=17% Similarity=0.152 Sum_probs=78.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcC
Q 006246 234 NAMISGFARFGRFEEARKLFNEMNDK---DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310 (654)
Q Consensus 234 ~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 310 (654)
..+...+...|++++|...|+++.+. +...|..+...+...|++++|...++++.+.. +
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~----------------- 73 (186)
T 3as5_A 12 RDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-P----------------- 73 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-----------------
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-C-----------------
Confidence 33444444455555555555544431 34445555555555555555555555554432 1
Q ss_pred ChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 006246 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFK 387 (654)
Q Consensus 311 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~ 387 (654)
.+..++..+...|...|++++|.+.|+++.. .+...|..+...+...|++++|++.+++
T Consensus 74 ------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 135 (186)
T 3as5_A 74 ------------------DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKI 135 (186)
T ss_dssp ------------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ------------------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 2233334444444444444444444444332 2344555555555556666666666666
Q ss_pred HhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006246 388 MQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQ 425 (654)
Q Consensus 388 m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 425 (654)
+.+.. +.+...+..+...+...|++++|...++.+.+
T Consensus 136 ~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 136 ALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55542 22345555566666666666666666666554
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.02 E-value=7.3e-09 Score=100.91 Aligned_cols=163 Identities=12% Similarity=0.031 Sum_probs=95.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHhhcCC----------C-CHHHHHHHHHHHHHcCChhHHHHHHHHHhhc------CCC
Q 006246 332 VLGTALVDMYAKCGRLDMAWKVFEDMKM----------K-EVFTWNAMIGGLAMHGRADDAIELFFKMQRE------KMR 394 (654)
Q Consensus 332 ~~~~~li~~y~~~g~~~~A~~~~~~m~~----------~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~ 394 (654)
.++..+...|...|++++|.+.|++... + ...+|..+...|...|++++|+..|+++.+. +-.
T Consensus 86 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 165 (283)
T 3edt_B 86 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD 165 (283)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3445555555555666665555554432 1 2345666777777777777777777776653 112
Q ss_pred C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHc------CCCCCc-chHHHHHHHHHH------cCCHHHHHHHHHhCC
Q 006246 395 P-DRITFACVLSACAHAGMIDRGLQALTYMQQMY------GIDPEV-EHYGCIVDLLGR------AGYLAEAEEVISSMP 460 (654)
Q Consensus 395 p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~------g~~p~~-~~~~~li~~~~~------~g~~~~A~~~~~~m~ 460 (654)
| ...++..+...+...|++++|..+++++.+.. ...+.. ..+..+...+.. ...+.++...++...
T Consensus 166 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (283)
T 3edt_B 166 PNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK 245 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC
Confidence 2 23467777778888888888888888776531 112222 233333333333 223455555555553
Q ss_pred -CCC-CHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Q 006246 461 -MEP-NAAVWEALLGACRKHGEVEFGERLGKILLEM 494 (654)
Q Consensus 461 -~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 494 (654)
..| ...++..+...|...|++++|...+++++++
T Consensus 246 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 246 VDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 223 3667888999999999999999999999875
No 85
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.98 E-value=9.9e-09 Score=113.32 Aligned_cols=161 Identities=9% Similarity=-0.012 Sum_probs=98.9
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 006246 261 EITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDM 340 (654)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 340 (654)
..+|+.+...|.+.|++++|++.|++.++.. +-+...+..+..++.+.|++++|++.|+++++.. +.+...+..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3456666666666666666666666665542 1233455555666666666666666666666554 2345566666666
Q ss_pred HHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHccCCHHHH
Q 006246 341 YAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRP-DRITFACVLSACAHAGMIDRG 416 (654)
Q Consensus 341 y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a 416 (654)
|.+.|++++|++.|++..+ .+...|+.+...|.+.|++++|++.|++.++. .| +...+..+..++...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHHHH
Confidence 6666666666666665543 35566677777777777777777777776664 33 344666666677777777666
Q ss_pred HHHHHHHHH
Q 006246 417 LQALTYMQQ 425 (654)
Q Consensus 417 ~~~~~~~~~ 425 (654)
.+.++++.+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666544
No 86
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.98 E-value=2.4e-08 Score=96.60 Aligned_cols=179 Identities=11% Similarity=-0.003 Sum_probs=117.4
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHhhcCCC---C---HHHHHHHHHHHHHcCChhHHHHHHHHHhhcCC-CCC-HHHHH
Q 006246 330 DAVLGTALVDMYAKCGRLDMAWKVFEDMKMK---E---VFTWNAMIGGLAMHGRADDAIELFFKMQREKM-RPD-RITFA 401 (654)
Q Consensus 330 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~-~~t~~ 401 (654)
+...+..+...+.+.|++++|...|+++... + ...|..+..+|.+.|++++|+..|++..+... .|+ ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 3444445556666666666666666666542 2 44566666666677777777777776666421 111 23444
Q ss_pred HHHHHHHc--------cCCHHHHHHHHHHHHHHcCCCCC-cchH-----------------HHHHHHHHHcCCHHHHHHH
Q 006246 402 CVLSACAH--------AGMIDRGLQALTYMQQMYGIDPE-VEHY-----------------GCIVDLLGRAGYLAEAEEV 455 (654)
Q Consensus 402 ~ll~~~~~--------~g~~~~a~~~~~~~~~~~g~~p~-~~~~-----------------~~li~~~~~~g~~~~A~~~ 455 (654)
.+..++.. .|++++|...|+++.+.+ |+ .... ..+...|.+.|++++|+..
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 55555555 667777777777766642 22 2222 5568889999999999999
Q ss_pred HHhC----CCCC-CHHHHHHHHHHHHHh----------CChHHHHHHHHHHHhcCCCCCCchHHHHHHHHH
Q 006246 456 ISSM----PMEP-NAAVWEALLGACRKH----------GEVEFGERLGKILLEMEPQNRRCDDVAKMRKLM 511 (654)
Q Consensus 456 ~~~m----~~~p-~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~a~~~~~~m 511 (654)
|+++ |..+ ....+..+..+|... |++++|+..++++++..|+++...++......+
T Consensus 171 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~ 241 (261)
T 3qky_A 171 YEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRA 241 (261)
T ss_dssp HHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 9887 2222 256788888888866 889999999999999999997555555544433
No 87
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.97 E-value=1.5e-08 Score=86.15 Aligned_cols=132 Identities=18% Similarity=0.198 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 006246 364 TWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLL 443 (654)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~ 443 (654)
.|..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|..+++++.+. .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 56777788888888888888888887754 335667777788888888888888888888774 233456777888888
Q ss_pred HHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Q 006246 444 GRAGYLAEAEEVISSM-P-MEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN 498 (654)
Q Consensus 444 ~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 498 (654)
.+.|++++|.+.++++ . .+.+..+|..+...+...|++++|...++++++.+|++
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 8999999999888876 2 23467888889999999999999999999999988863
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.96 E-value=7.1e-08 Score=93.54 Aligned_cols=191 Identities=10% Similarity=0.024 Sum_probs=136.4
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC-----CCHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q 006246 315 GIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM-----KEVFTWNAMIGGLAMHGRADDAIELFFKMQ 389 (654)
Q Consensus 315 a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 389 (654)
+...++...+.+ .++......+..+|...|++++|++++.+... .+...+-.++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 556666665554 34444555778888888999999888887743 245677778888899999999999999987
Q ss_pred hcCCCC-----CHHHHHHHHHHH--HccC--CHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-
Q 006246 390 REKMRP-----DRITFACVLSAC--AHAG--MIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM- 459 (654)
Q Consensus 390 ~~g~~p-----~~~t~~~ll~~~--~~~g--~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m- 459 (654)
+. .| +..+...|..++ ...| +..+|..+|+++.+. .|+......+..++.+.|++++|.+.++.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 74 56 356666666653 2234 888999999998653 344233344455788999999999998764
Q ss_pred CC----------CC-CHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCC---CchHHHHHHHHHHh
Q 006246 460 PM----------EP-NAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR---RCDDVAKMRKLMKE 513 (654)
Q Consensus 460 ~~----------~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~a~~~~~~m~~ 513 (654)
.. .| |+.+...++......|+ .|.++++++.+..|+++ .+.+....|..+..
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~~k~~~Fd~~~~ 304 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQEIDAKFDELVR 304 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHH
Confidence 11 24 56777667766677786 88999999999999998 66666666766654
No 89
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.96 E-value=6e-09 Score=101.55 Aligned_cols=210 Identities=12% Similarity=0.027 Sum_probs=126.4
Q ss_pred HHHHHHHhcCCC----CHhHHHHHHHHHHhcCChHHHHHHHHHHHhC------CCCC-CcchHHHHHHHHHhcCChhHHH
Q 006246 248 EARKLFNEMNDK----DEITWSAIIDGYTKDGYYKEALEVFNEMQRD------KIKP-RKFVLSCVLAACASLGALDQGI 316 (654)
Q Consensus 248 ~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~ll~~~~~~g~~~~a~ 316 (654)
+|++++++...+ ...+|..+...|...|++++|+..|++.... +-.| ...++..+...+...|++++|.
T Consensus 26 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 105 (283)
T 3edt_B 26 QALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAE 105 (283)
T ss_dssp HHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHH
Confidence 344444444322 2445666777777777777777777766543 1112 2345666666777777777777
Q ss_pred HHHHHHHHc------C-CCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCCC-----------CHHHHHHHHHHHHHcCCh
Q 006246 317 WIHDHVKRN------S-ICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK-----------EVFTWNAMIGGLAMHGRA 378 (654)
Q Consensus 317 ~~~~~~~~~------~-~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-----------~~~~~~~li~~~~~~g~~ 378 (654)
..+..+.+. . .+....++..+...|...|++++|...|+++... ...++..+...|...|++
T Consensus 106 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 185 (283)
T 3edt_B 106 PLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKY 185 (283)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH
Confidence 777776654 1 1234566777888888888888888888766432 245788888889999999
Q ss_pred hHHHHHHHHHhhc-------CCCCCHH-HHHHHHHHHHccCC------HHHHHHHHHHHHHHcCCCCCcchHHHHHHHHH
Q 006246 379 DDAIELFFKMQRE-------KMRPDRI-TFACVLSACAHAGM------IDRGLQALTYMQQMYGIDPEVEHYGCIVDLLG 444 (654)
Q Consensus 379 ~~A~~l~~~m~~~-------g~~p~~~-t~~~ll~~~~~~g~------~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~ 444 (654)
++|+.+|+++.+. ...+... .+..+.......+. +..+...++.... ..+.....+..+..+|.
T Consensus 186 ~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~ 263 (283)
T 3edt_B 186 QDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV--DSPTVNTTLRSLGALYR 263 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC--CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHH
Confidence 9999999888763 1233333 23333222222222 2222222221110 00112346788999999
Q ss_pred HcCCHHHHHHHHHhC
Q 006246 445 RAGYLAEAEEVISSM 459 (654)
Q Consensus 445 ~~g~~~~A~~~~~~m 459 (654)
+.|++++|.+++++.
T Consensus 264 ~~g~~~~A~~~~~~a 278 (283)
T 3edt_B 264 RQGKLEAAHTLEDCA 278 (283)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHH
Confidence 999999999999864
No 90
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.92 E-value=8.5e-08 Score=90.44 Aligned_cols=188 Identities=9% Similarity=-0.011 Sum_probs=107.2
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHH
Q 006246 260 DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVD 339 (654)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 339 (654)
|+..|......+...|++++|+..|++..+...+++...+..+..++...|++++|...+..+.+.. +.+..++..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 3455556666666666666666666666655432455555556666666666666666666666544 234556666666
Q ss_pred HHHHcCCHHHHHHHHhhcCC---CCH-------HHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCC---HHHHHHHHHH
Q 006246 340 MYAKCGRLDMAWKVFEDMKM---KEV-------FTWNAMIGGLAMHGRADDAIELFFKMQREKMRPD---RITFACVLSA 406 (654)
Q Consensus 340 ~y~~~g~~~~A~~~~~~m~~---~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~~ 406 (654)
.|.+.|++++|.+.|++... .+. ..|..+...+...|++++|++.|++..+. .|+ ...+..+...
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHH
Confidence 67777777777776666543 233 34666666677777777777777777664 444 2345555555
Q ss_pred HHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC
Q 006246 407 CAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459 (654)
Q Consensus 407 ~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (654)
+.. .+..+++.+... + ..+...|... .....+.+++|+..+++.
T Consensus 163 ~~~-----~~~~~~~~a~~~-~-~~~~~~~~~~--~~~~~~~~~~A~~~~~~a 206 (228)
T 4i17_A 163 FYN-----NGADVLRKATPL-A-SSNKEKYASE--KAKADAAFKKAVDYLGEA 206 (228)
T ss_dssp HHH-----HHHHHHHHHGGG-T-TTCHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHHhc-c-cCCHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 533 233344444331 1 1222233222 233455677777777765
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.89 E-value=9e-08 Score=94.22 Aligned_cols=160 Identities=13% Similarity=0.011 Sum_probs=105.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-chhHHHHHHHHHHHc-CCHHHHHHHHhhcCCC-----C----H
Q 006246 298 VLSCVLAACASLGALDQGIWIHDHVKRN----SICV-DAVLGTALVDMYAKC-GRLDMAWKVFEDMKMK-----E----V 362 (654)
Q Consensus 298 t~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~y~~~-g~~~~A~~~~~~m~~~-----~----~ 362 (654)
+|..+..++...|++++|...+..+++. |-.. -..+++.+..+|... |++++|...|++...- + .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 4444444455555555555555444432 1000 134566788888885 9999988888876541 1 3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHH------HHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcc--
Q 006246 363 FTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRI------TFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVE-- 434 (654)
Q Consensus 363 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~------t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~-- 434 (654)
.+|+.+...|.+.|++++|+..|++..+........ .|..+..++...|++++|...|++..+ +.|+..
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~ 235 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS---EDPNFADS 235 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC---C-------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCCCc
Confidence 468888999999999999999999998854332221 567777788899999999999998764 445422
Q ss_pred ----hHHHHHHHHH--HcCCHHHHHHHHHhCC
Q 006246 435 ----HYGCIVDLLG--RAGYLAEAEEVISSMP 460 (654)
Q Consensus 435 ----~~~~li~~~~--~~g~~~~A~~~~~~m~ 460 (654)
.+..++..+. ..+++++|++.|+++.
T Consensus 236 ~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 236 RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp --HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 2344555554 4678999999998873
No 92
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.83 E-value=3.1e-06 Score=89.47 Aligned_cols=370 Identities=8% Similarity=-0.020 Sum_probs=219.0
Q ss_pred CC-ChHHHHHHHhcCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCC-cHHHHHHHH
Q 006246 80 FS-NFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEA-DKEGVQVHA 157 (654)
Q Consensus 80 ~g-~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~ 157 (654)
.| +++.|+.+|+.+.. .+-. |+++.+..+|++.... .|+...|...++-..+.++ .+....+|+
T Consensus 7 ~~~~i~~aR~vyer~l~-----------~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe 72 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARR-----------LYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYE 72 (493)
T ss_dssp -----CCHHHHHHHHHH-----------HHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHH
T ss_pred cCcchHHHHHHHHHHHH-----------HCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 56 48888888887542 1111 8899999999999874 5788888887777655553 456778888
Q ss_pred HHHHh-CCCC-ChhhHHHHHHHHH----hcCCHHHHHHHHhcCCCCChhhHHHHHHHHH---HcCCHHHHHHHHHhcCCC
Q 006246 158 HVVKN-GLCG-DVHVKSSGIQMYA----CFGCVNKARQILDDGSKSDVICWNALIDGYL---KCGDIEGAKELFKSTKDK 228 (654)
Q Consensus 158 ~~~~~-g~~~-~~~~~~~li~~y~----~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~---~~g~~~~A~~~~~~m~~~ 228 (654)
.++.. |..+ +..+|...+..+. ..++++.++++|++........+..+-..|. +......+.+++.+..
T Consensus 73 ~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~-- 150 (493)
T 2uy1_A 73 FTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTL-- 150 (493)
T ss_dssp HHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHH--
T ss_pred HHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHh--
Confidence 88765 5433 5677888777764 3467888999998863211112222222221 1122222332222210
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhcCC----CCHhHHHHHHHHHHhcC--C-----hHHHHHHHHHHHhCCCCCCcc
Q 006246 229 NTGSYNAMISGFARFGRFEEARKLFNEMND----KDEITWSAIIDGYTKDG--Y-----YKEALEVFNEMQRDKIKPRKF 297 (654)
Q Consensus 229 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g--~-----~~~A~~~~~~m~~~g~~p~~~ 297 (654)
+.+..|..+++.+.. .+...|...+.--..++ - .+.+..+|++++... +-+..
T Consensus 151 ---------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~ 214 (493)
T 2uy1_A 151 ---------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEE 214 (493)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHH
T ss_pred ---------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHH
Confidence 112222222222211 23345555554322221 1 234566777777642 33445
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHH-HHHHhhcC------------CCCHHH
Q 006246 298 VLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMA-WKVFEDMK------------MKEVFT 364 (654)
Q Consensus 298 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A-~~~~~~m~------------~~~~~~ 364 (654)
.|...+.-+...|+.+.|..+++.+.+. +.+...+. .|+...+.++. ..+.+... ......
T Consensus 215 lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l 288 (493)
T 2uy1_A 215 VYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLL 288 (493)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHHHHHHHHHTC----------CHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHH
Confidence 5655666667778888888888888777 33333332 22222111111 11111110 012245
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 006246 365 WNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAH-AGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLL 443 (654)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~-~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~ 443 (654)
|-..+..+.+.+..+.|..+|++. +. ..++...|......-.. .++.+.|..+|+...+.++- +...+...++..
T Consensus 289 w~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~--~~~~~~~yid~e 364 (493)
T 2uy1_A 289 RINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD--STLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC--CHHHHHHHHHHH
Confidence 777777777788899999999999 32 12244444432222222 33699999999999986432 234567778888
Q ss_pred HHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Q 006246 444 GRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLE 493 (654)
Q Consensus 444 ~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 493 (654)
.+.|+.+.|..+|+++. .....|...+.--..+|+.+.+..++++..+
T Consensus 365 ~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 365 LRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 89999999999999984 3688999999988999999999988887754
No 93
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.81 E-value=8.3e-08 Score=89.19 Aligned_cols=127 Identities=7% Similarity=-0.046 Sum_probs=99.1
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCC-CcchHHHHHHHHHH
Q 006246 367 AMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDP-EVEHYGCIVDLLGR 445 (654)
Q Consensus 367 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p-~~~~~~~li~~~~~ 445 (654)
.+...|.+.|++++|+..|++.++.. +-+...+..+...+...|++++|...|+++.+. .| +...+..+...|..
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHH
Confidence 38888999999999999999998864 235678888999999999999999999999874 44 46678888888876
Q ss_pred cCC--HHHHHHHHHhCCCCCC--HHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Q 006246 446 AGY--LAEAEEVISSMPMEPN--AAVWEALLGACRKHGEVEFGERLGKILLEMEPQN 498 (654)
Q Consensus 446 ~g~--~~~A~~~~~~m~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 498 (654)
.|. .+++...++... .|+ ...|..+..++...|++++|+..+++++++.|+.
T Consensus 135 ~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 654 445666666653 344 3445566777888999999999999999999974
No 94
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.78 E-value=2.7e-07 Score=89.53 Aligned_cols=175 Identities=13% Similarity=0.086 Sum_probs=98.2
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHcCCHHHHHHHHhhcC
Q 006246 280 ALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSI-CVDAVLGTALVDMYAKCGRLDMAWKVFEDMK 358 (654)
Q Consensus 280 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 358 (654)
|+..|++....+ .++..++..+..++...|++++|.+++...+..+. ..+...+..++..|.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555555555443 34444444555566666666666666666555442 2345555566677777777777777776665
Q ss_pred CCC-------HHHHHHHHHH--HHHcC--ChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHc
Q 006246 359 MKE-------VFTWNAMIGG--LAMHG--RADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY 427 (654)
Q Consensus 359 ~~~-------~~~~~~li~~--~~~~g--~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 427 (654)
+.+ -.+...|..+ ....| ++++|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+.+
T Consensus 164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 422 2334444444 22223 677777777777554 3443333344446677777777777777655421
Q ss_pred C--------CCCCcchHHHHHHHHHHcCCHHHHHHHHHhC
Q 006246 428 G--------IDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459 (654)
Q Consensus 428 g--------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (654)
. -+-+..+...+|......|+ +|.++++++
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL 279 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQL 279 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHH
Confidence 0 02234445455555555665 667777666
No 95
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.78 E-value=1.3e-07 Score=93.90 Aligned_cols=165 Identities=12% Similarity=0.041 Sum_probs=108.7
Q ss_pred HHHHHcCCHHHHHHHHhhcCCC-----C----HHHHHHHHHHHHHcCChhHHHHHHHHHhhcCC---CCC--HHHHHHHH
Q 006246 339 DMYAKCGRLDMAWKVFEDMKMK-----E----VFTWNAMIGGLAMHGRADDAIELFFKMQREKM---RPD--RITFACVL 404 (654)
Q Consensus 339 ~~y~~~g~~~~A~~~~~~m~~~-----~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~~t~~~ll 404 (654)
..|...|++++|...|.+...- + ..+|+.+...|...|++++|+..|++..+.-. .|. ..++..+.
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 123 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555666666666666654421 1 34677777778888888888888877654210 111 24666777
Q ss_pred HHHHccCCHHHHHHHHHHHHHHcCCCCC----cchHHHHHHHHHHcCCHHHHHHHHHhCC----CCCC----HHHHHHHH
Q 006246 405 SACAHAGMIDRGLQALTYMQQMYGIDPE----VEHYGCIVDLLGRAGYLAEAEEVISSMP----MEPN----AAVWEALL 472 (654)
Q Consensus 405 ~~~~~~g~~~~a~~~~~~~~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~----~~~~~~ll 472 (654)
..|.. |++++|+..|++..+.+.-..+ ..++..+..+|.+.|++++|++.|++.- ..++ ...+..++
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g 202 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV 202 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 77777 8888888888887664211111 3467778888888888888888888761 1111 23566666
Q ss_pred HHHHHhCChHHHHHHHHHHHhcCCCCCCchHHH
Q 006246 473 GACRKHGEVEFGERLGKILLEMEPQNRRCDDVA 505 (654)
Q Consensus 473 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~a~ 505 (654)
..+...|++++|...+++++ ++|+.....++.
T Consensus 203 ~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~ 234 (307)
T 2ifu_A 203 LVQLHRADYVAAQKCVRESY-SIPGFSGSEDCA 234 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHH
Confidence 77777889999999999988 888776444443
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.75 E-value=2.2e-07 Score=102.99 Aligned_cols=188 Identities=11% Similarity=-0.025 Sum_probs=150.3
Q ss_pred HhcCChhHHHHHHHHHH--------HcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHc
Q 006246 307 ASLGALDQGIWIHDHVK--------RNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMH 375 (654)
Q Consensus 307 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~ 375 (654)
...|++++|.+.++.+. +.. +.+...+..+...|.+.|++++|.+.|+++.+ .+...|..+...|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 77899999999999988 332 44677888899999999999999999998875 4778999999999999
Q ss_pred CChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHH
Q 006246 376 GRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEV 455 (654)
Q Consensus 376 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 455 (654)
|++++|++.|++..+.. +-+...+..+..++.+.|++++ .+.|+++.+. -+.+...|..+..+|.+.|++++|++.
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999864 2256688889999999999999 9999999874 233467889999999999999999999
Q ss_pred HHhC-CCCCC-HHHHHHHHHHHHHhCC-----hHHHHHHHHHHHhcCCCCC
Q 006246 456 ISSM-PMEPN-AAVWEALLGACRKHGE-----VEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 456 ~~~m-~~~p~-~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~p~~~ 499 (654)
|++. ...|+ ...|..+..++...|+ .+...++.+.+.++.++++
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~ 607 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEP 607 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTST
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcH
Confidence 9998 46675 6778888888877665 3444555555555655554
No 97
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.74 E-value=2.3e-07 Score=78.51 Aligned_cols=125 Identities=21% Similarity=0.226 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 006246 263 TWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYA 342 (654)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 342 (654)
.|..+...+...|++++|+.+|+++.+.+ +.+...+..+...+...|++++|...+..+.+.. +.+...+..+...|.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 34555566666666666666666665432 2233344444444445555555555555544432 122333334444444
Q ss_pred HcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q 006246 343 KCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQ 389 (654)
Q Consensus 343 ~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 389 (654)
+.|++++|.+.|+++.. .+...|..+...+.+.|++++|...|+++.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 44444444444443321 123333444444444444444444444443
No 98
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.72 E-value=3.7e-06 Score=82.29 Aligned_cols=219 Identities=9% Similarity=0.045 Sum_probs=160.6
Q ss_pred CChHHHHHHHHHHHhCCCCCCcc-hHHHHHHHHHhcC--ChhHHHHHHHHHHHcCCCCchhHHHHHHHHH----HHc---
Q 006246 275 GYYKEALEVFNEMQRDKIKPRKF-VLSCVLAACASLG--ALDQGIWIHDHVKRNSICVDAVLGTALVDMY----AKC--- 344 (654)
Q Consensus 275 g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y----~~~--- 344 (654)
...++|++++..++.. .|+.. .++.--.++...+ +++++++.++.++... +-+..+|+.-...+ .+.
T Consensus 47 e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 47 EYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcccc
Confidence 3445777777777664 34333 3444455555666 7777777777777665 33445555444444 444
Q ss_pred CCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChh--HHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCC------H
Q 006246 345 GRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRAD--DAIELFFKMQREKMRPDRITFACVLSACAHAGM------I 413 (654)
Q Consensus 345 g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~------~ 413 (654)
+++++++++++++.. +|..+|+.-.-.+.+.|.++ ++++.++++++..+. |...|+.-.....+.+. +
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhH
Confidence 678889888888875 57788988888888889888 999999999987644 77777777666777776 8
Q ss_pred HHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHH-HHHHHHhCC-C----CCCHHHHHHHHHHHHHhCChHHHHHH
Q 006246 414 DRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAE-AEEVISSMP-M----EPNAAVWEALLGACRKHGEVEFGERL 487 (654)
Q Consensus 414 ~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~-~----~p~~~~~~~ll~~~~~~g~~~~a~~~ 487 (654)
+++++.+..+... -+-|...|+.+..++.+.|+..+ +.+++++.- . ..+...+..+...+.+.|+.++|.++
T Consensus 203 ~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 203 DEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 9999999998874 34567778888888989888555 556777652 1 34788999999999999999999999
Q ss_pred HHHHHh-cCCCCC
Q 006246 488 GKILLE-MEPQNR 499 (654)
Q Consensus 488 ~~~~~~-~~p~~~ 499 (654)
++.+.+ .+|-..
T Consensus 281 ~~~l~~~~Dpir~ 293 (306)
T 3dra_A 281 YDLLKSKYNPIRS 293 (306)
T ss_dssp HHHHHHTTCGGGH
T ss_pred HHHHHhccChHHH
Confidence 999997 788753
No 99
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.72 E-value=2e-07 Score=83.90 Aligned_cols=155 Identities=14% Similarity=0.012 Sum_probs=115.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHH-HHc
Q 006246 334 GTALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSA-CAH 409 (654)
Q Consensus 334 ~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~-~~~ 409 (654)
...+...+.+.|++++|...|++... .+...|..+...+...|++++|+..|++..+.. |+...+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 44566778888999999999988875 367788889999999999999999998887653 344332222111 112
Q ss_pred cCCHHHHHHHHHHHHHHcCCCC-CcchHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHHhCChHHH
Q 006246 410 AGMIDRGLQALTYMQQMYGIDP-EVEHYGCIVDLLGRAGYLAEAEEVISSM-PMEPN---AAVWEALLGACRKHGEVEFG 484 (654)
Q Consensus 410 ~g~~~~a~~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~~g~~~~a 484 (654)
.+...++...+++..+. .| +...+..+..+|...|++++|.+.|+++ ...|+ ...|..+...+...|+.++|
T Consensus 87 ~~~~~~a~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA---NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHTSCHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 22233467888888763 44 4678888999999999999999999876 44443 66889999999999999999
Q ss_pred HHHHHHHHh
Q 006246 485 ERLGKILLE 493 (654)
Q Consensus 485 ~~~~~~~~~ 493 (654)
...|++++.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988765
No 100
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.71 E-value=4e-07 Score=87.80 Aligned_cols=183 Identities=8% Similarity=-0.034 Sum_probs=90.5
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhcCCC---C---HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC-cchHH
Q 006246 229 NTGSYNAMISGFARFGRFEEARKLFNEMNDK---D---EITWSAIIDGYTKDGYYKEALEVFNEMQRDKI-KPR-KFVLS 300 (654)
Q Consensus 229 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~~ 300 (654)
+...+..+...+.+.|++++|...|+++.+. + ...+..+..+|.+.|++++|+..|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 3444555555566666666666666655431 2 34455555566666666666666666555321 011 12233
Q ss_pred HHHHHHHh--------cCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 006246 301 CVLAACAS--------LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGL 372 (654)
Q Consensus 301 ~ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~ 372 (654)
.+..++.. .|++++|...+..+++... .+.....++.......+. -...+..+...|
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~a~~~~~~~~~~--------------~~~~~~~la~~~ 158 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP-NHELVDDATQKIRELRAK--------------LARKQYEAARLY 158 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT-TCTTHHHHHHHHHHHHHH--------------HHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc-CchhHHHHHHHHHHHHHH--------------HHHHHHHHHHHH
Confidence 33444444 5555555555555554431 111221111111000000 011134556667
Q ss_pred HHcCChhHHHHHHHHHhhcCCCC--CHHHHHHHHHHHHcc----------CCHHHHHHHHHHHHHH
Q 006246 373 AMHGRADDAIELFFKMQREKMRP--DRITFACVLSACAHA----------GMIDRGLQALTYMQQM 426 (654)
Q Consensus 373 ~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~~~~~~----------g~~~~a~~~~~~~~~~ 426 (654)
.+.|++++|+..|+++.+..... ....+..+..++... |++++|...|+.+.+.
T Consensus 159 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 159 ERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 77777777777777776642111 123455555555544 6667777777776664
No 101
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.68 E-value=3e-07 Score=101.88 Aligned_cols=165 Identities=9% Similarity=-0.051 Sum_probs=120.2
Q ss_pred HHcCCHHHHHHHHHhcC--------C---CCcchHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcC
Q 006246 210 LKCGDIEGAKELFKSTK--------D---KNTGSYNAMISGFARFGRFEEARKLFNEMND---KDEITWSAIIDGYTKDG 275 (654)
Q Consensus 210 ~~~g~~~~A~~~~~~m~--------~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 275 (654)
...|++++|++.|++.. + .+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|.+.|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 67888888888888776 2 3556777888888888888888888887764 36677888888888888
Q ss_pred ChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHh
Q 006246 276 YYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFE 355 (654)
Q Consensus 276 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 355 (654)
++++|++.|++..+.. +-+...+..+..++.+.|++++ .+.|+.+.+.. +.+...+..+..+|.+.|++++|.+.|+
T Consensus 482 ~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 482 DYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp CHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8888888888887753 2245567777777888888888 88888887765 3456677777888888888888888888
Q ss_pred hcCCC---CHHHHHHHHHHHHHcCC
Q 006246 356 DMKMK---EVFTWNAMIGGLAMHGR 377 (654)
Q Consensus 356 ~m~~~---~~~~~~~li~~~~~~g~ 377 (654)
+..+. +...|..+..++...++
T Consensus 559 ~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 559 EVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp TSCTTSTTHHHHHHHHHHHTC----
T ss_pred hhcccCcccHHHHHHHHHHHHccCC
Confidence 77653 34566666666655443
No 102
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.68 E-value=3.3e-07 Score=99.54 Aligned_cols=152 Identities=8% Similarity=-0.064 Sum_probs=101.6
Q ss_pred CCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 006246 345 GRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALT 421 (654)
Q Consensus 345 g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 421 (654)
|++++|.+.|++..+ .+...|..+...|.+.|++++|++.|++..+.. +.+...+..+...+...|++++|.+.++
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 566777777776654 245677777778888888888888888877753 2245677777777888888888888888
Q ss_pred HHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHh---CChHHHHHHHHHHHhcCC
Q 006246 422 YMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-PMEP-NAAVWEALLGACRKH---GEVEFGERLGKILLEMEP 496 (654)
Q Consensus 422 ~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~p 496 (654)
+..+. -+.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|...++++++.+|
T Consensus 82 ~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 82 QASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTC
T ss_pred HHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCC
Confidence 87764 1234567777888888888888888888776 2233 577788888888888 888888888888888888
Q ss_pred CCC
Q 006246 497 QNR 499 (654)
Q Consensus 497 ~~~ 499 (654)
++.
T Consensus 160 ~~~ 162 (568)
T 2vsy_A 160 GAV 162 (568)
T ss_dssp CCS
T ss_pred ccc
Confidence 764
No 103
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.66 E-value=5.7e-07 Score=84.59 Aligned_cols=181 Identities=13% Similarity=0.048 Sum_probs=107.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC--chhHHHHHHHHHHHcCCHHHHHHHHhhcCC--C-CH---HHHHHHH
Q 006246 298 VLSCVLAACASLGALDQGIWIHDHVKRNSICV--DAVLGTALVDMYAKCGRLDMAWKVFEDMKM--K-EV---FTWNAMI 369 (654)
Q Consensus 298 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~---~~~~~li 369 (654)
.+..+...+...|++++|...++.+++..... ....+..+..+|.+.|++++|...|+++.+ | +. .++..+.
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 34444556667777777777777777653221 124555666777777777777777776653 2 11 1344444
Q ss_pred HHHHH------------------cCChhHHHHHHHHHhhcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHHcCCC
Q 006246 370 GGLAM------------------HGRADDAIELFFKMQREKMRPDRI-TFACVLSACAHAGMIDRGLQALTYMQQMYGID 430 (654)
Q Consensus 370 ~~~~~------------------~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~ 430 (654)
.++.. .|+.++|+..|+++++. .|+.. ....... . ..+...+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----l------~~~~~~~~------ 147 (225)
T 2yhc_A 86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----L------VFLKDRLA------ 147 (225)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----H------HHHHHHHH------
T ss_pred HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----H------HHHHHHHH------
Confidence 44443 23445555555555443 22221 1110000 0 00000000
Q ss_pred CCcchHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCC
Q 006246 431 PEVEHYGCIVDLLGRAGYLAEAEEVISSM-PMEPN----AAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 431 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 499 (654)
.....+...|.+.|++++|+..|+++ ...|+ ...+..+..++.+.|+.++|+..++++....|++.
T Consensus 148 ---~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 148 ---KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp ---HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred ---HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 01134667889999999999999987 22333 35788899999999999999999999999888763
No 104
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.65 E-value=1.1e-06 Score=81.80 Aligned_cols=172 Identities=8% Similarity=-0.124 Sum_probs=110.8
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCCC-CHHHHHHHHHHHHHcC----ChhHHHHHHHHHh
Q 006246 315 GIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK-EVFTWNAMIGGLAMHG----RADDAIELFFKMQ 389 (654)
Q Consensus 315 a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~~g----~~~~A~~l~~~m~ 389 (654)
|.+.|....+.| ++..+..|..+|...+++++|.+.|++..+. +..++..|...|.. + +.++|+++|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 444555555543 4555566666666667777777777665543 55666666666665 5 6777777777776
Q ss_pred hcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHHcCCCCC---cchHHHHHHHHHH----cCCHHHHHHHHHh
Q 006246 390 REKMRPDRITFACVLSACAH----AGMIDRGLQALTYMQQMYGIDPE---VEHYGCIVDLLGR----AGYLAEAEEVISS 458 (654)
Q Consensus 390 ~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~g~~p~---~~~~~~li~~~~~----~g~~~~A~~~~~~ 458 (654)
+.| +...+..|...+.. .+++++|.++|++..+ ..|. ...+..|..+|.. .+++++|++.|++
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~---~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR---DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS---STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH---cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 654 45556666666655 6677777777777654 2332 5566777777777 6778888888777
Q ss_pred C-CCCCCHHHHHHHHHHHHHh-C-----ChHHHHHHHHHHHhcCC
Q 006246 459 M-PMEPNAAVWEALLGACRKH-G-----EVEFGERLGKILLEMEP 496 (654)
Q Consensus 459 m-~~~p~~~~~~~ll~~~~~~-g-----~~~~a~~~~~~~~~~~p 496 (654)
. ...++...+..|...|... | +.++|...++++.+..+
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 6 2224555666777766543 2 78888888888887653
No 105
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.65 E-value=3.2e-07 Score=90.01 Aligned_cols=162 Identities=10% Similarity=-0.041 Sum_probs=98.1
Q ss_pred CCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHH-HH
Q 006246 328 CVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFA-CV 403 (654)
Q Consensus 328 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~l 403 (654)
+.+......+...+...|++++|...|++... .+...+..+...|.+.|++++|+..++++... .|+..... ..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHH
Confidence 33444555566666666777777766666543 24556666666677777777777777666554 33433221 22
Q ss_pred HHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHHhC
Q 006246 404 LSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-PMEP---NAAVWEALLGACRKHG 479 (654)
Q Consensus 404 l~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~~~~~~g 479 (654)
...+...+..++|...+++..+. -+.+...+..+..+|...|++++|++.++++ ...| +...+..++..+...|
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 22344555566666666666653 2233556666777777777777777777665 2223 2567777777777777
Q ss_pred ChHHHHHHHHHHHh
Q 006246 480 EVEFGERLGKILLE 493 (654)
Q Consensus 480 ~~~~a~~~~~~~~~ 493 (654)
+.+.|...|++.+.
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 77777777776654
No 106
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.64 E-value=3.9e-07 Score=84.67 Aligned_cols=146 Identities=10% Similarity=-0.060 Sum_probs=90.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCH
Q 006246 334 GTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMI 413 (654)
Q Consensus 334 ~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 413 (654)
+..+...|...|++++|...|++...++...|..+...|...|++++|++.|++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 34455566666666666666666666666666666666666666666666666666542 22444556666666666666
Q ss_pred HHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHhCChHHHHHHHHHHH
Q 006246 414 DRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEP-NAAVWEALLGACRKHGEVEFGERLGKILL 492 (654)
Q Consensus 414 ~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 492 (654)
++|.+.|+...+. .|+..... +...| +...| ....|..+...+...|++++|...+++++
T Consensus 88 ~~A~~~~~~al~~---~~~~~~~~-----~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 88 DLAIKDLKEALIQ---LRGNQLID-----YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHHT---TTTCSEEE-----CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCccHHH-----HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 6666666666552 12111000 00000 01223 35778889999999999999999999999
Q ss_pred hcCCCCC
Q 006246 493 EMEPQNR 499 (654)
Q Consensus 493 ~~~p~~~ 499 (654)
++.|++.
T Consensus 149 ~~~p~~~ 155 (213)
T 1hh8_A 149 SMKSEPR 155 (213)
T ss_dssp TTCCSGG
T ss_pred HcCcccc
Confidence 9999764
No 107
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.64 E-value=5.9e-08 Score=84.88 Aligned_cols=135 Identities=9% Similarity=-0.026 Sum_probs=88.4
Q ss_pred HHHHHcCChhHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCC
Q 006246 370 GGLAMHGRADDAIELFFKMQREKMRP-DRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGY 448 (654)
Q Consensus 370 ~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~ 448 (654)
..+...|++++|++.+++.... .| +...+..+...|.+.|++++|++.|++..+. -+-+...|..+..+|.+.|+
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCc
Confidence 3344456667777777666543 23 2334556666777777777777777777663 12245667777777777778
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChHHHHHH-HHHHHhcCCCCCCchHHHHHHHHH
Q 006246 449 LAEAEEVISSM-PMEP-NAAVWEALLGACRKHGEVEFGERL-GKILLEMEPQNRRCDDVAKMRKLM 511 (654)
Q Consensus 449 ~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~-~~~~~~~~p~~~~~~~a~~~~~~m 511 (654)
+++|+..|++. ...| +..+|..+...|...|+.++|.+. ++++++++|+++ .+..++..+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~---~~~~l~~~l 143 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSP---AVYKLKEQL 143 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCH---HHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCH---HHHHHHHHH
Confidence 88877777766 3344 577888888888888888766554 588899998874 444444433
No 108
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.64 E-value=1.9e-07 Score=92.62 Aligned_cols=151 Identities=13% Similarity=0.003 Sum_probs=81.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhcCC-------C--CHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCC---C--CHHH
Q 006246 334 GTALVDMYAKCGRLDMAWKVFEDMKM-------K--EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMR---P--DRIT 399 (654)
Q Consensus 334 ~~~li~~y~~~g~~~~A~~~~~~m~~-------~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~---p--~~~t 399 (654)
++.+...|.+.|++++|...|++... + -..+|+.+...|.. |++++|++.|++..+.... + ...+
T Consensus 79 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~ 157 (307)
T 2ifu_A 79 FEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAEL 157 (307)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHH
Confidence 33444444445555444444443321 1 12355566666666 7777777777666542100 0 1245
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCC----cchHHHHHHHHHHcCCHHHHHHHHHhCCCCCC------HHHHH
Q 006246 400 FACVLSACAHAGMIDRGLQALTYMQQMYGIDPE----VEHYGCIVDLLGRAGYLAEAEEVISSMPMEPN------AAVWE 469 (654)
Q Consensus 400 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~------~~~~~ 469 (654)
+..+...+...|++++|+..|++..+...-.++ ...+..++.++...|++++|...|++.-..|+ .....
T Consensus 158 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~p~~~~~~e~~~l~ 237 (307)
T 2ifu_A 158 IGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALE 237 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTSTTSHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 666677777777777777777777653211111 12455556666777888888887776433332 22344
Q ss_pred HHHHHHHHhCChHHHHH
Q 006246 470 ALLGACRKHGEVEFGER 486 (654)
Q Consensus 470 ~ll~~~~~~g~~~~a~~ 486 (654)
.++.++ ..|+.+.+..
T Consensus 238 ~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 238 DLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHH-HTTCHHHHHH
T ss_pred HHHHHH-HhcCHHHHHH
Confidence 455555 4566655544
No 109
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.62 E-value=7e-07 Score=82.83 Aligned_cols=133 Identities=11% Similarity=-0.020 Sum_probs=69.9
Q ss_pred HHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCC
Q 006246 336 ALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGM 412 (654)
Q Consensus 336 ~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 412 (654)
.+...|.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++.++.. +-+..++..+...+...|.
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 356666666666666666665543 255666666666666666666666666666642 1234455555555544432
Q ss_pred --HHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 006246 413 --IDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-PMEPNAAVWEALL 472 (654)
Q Consensus 413 --~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll 472 (654)
.+.+...+.... ...|....+..+..++...|++++|+..|++. ...|+......+.
T Consensus 138 ~~~~~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~ 197 (208)
T 3urz_A 138 QEKKKLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 223333333322 11111122333444555566777777777665 4556655444433
No 110
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.62 E-value=9.9e-07 Score=86.43 Aligned_cols=157 Identities=10% Similarity=-0.003 Sum_probs=116.0
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC--CCHHH-HHHHHHHHH
Q 006246 297 FVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM--KEVFT-WNAMIGGLA 373 (654)
Q Consensus 297 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~-~~~li~~~~ 373 (654)
..+..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|...|+++.. |+... +......+.
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~ 196 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELL 196 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHH
Confidence 344445555666667777777776666654 33566777888889999999999999988875 33332 223333466
Q ss_pred HcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCC---cchHHHHHHHHHHcCCHH
Q 006246 374 MHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPE---VEHYGCIVDLLGRAGYLA 450 (654)
Q Consensus 374 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~---~~~~~~li~~~~~~g~~~ 450 (654)
..++.++|+..|++..+.. +.+...+..+...+...|++++|...|..+.+. .|+ ...+..++.+|...|+.+
T Consensus 197 ~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~---~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 197 XQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRX---DLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred hhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc---ccccccchHHHHHHHHHHHcCCCC
Confidence 7788888999999888863 335668888888999999999999999999875 343 567888999999999999
Q ss_pred HHHHHHHh
Q 006246 451 EAEEVISS 458 (654)
Q Consensus 451 ~A~~~~~~ 458 (654)
+|...+++
T Consensus 273 ~a~~~~r~ 280 (287)
T 3qou_A 273 ALASXYRR 280 (287)
T ss_dssp HHHHHHHH
T ss_pred cHHHHHHH
Confidence 98887765
No 111
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.62 E-value=1.4e-06 Score=80.91 Aligned_cols=123 Identities=11% Similarity=-0.076 Sum_probs=97.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHH
Q 006246 298 VLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAM 374 (654)
Q Consensus 298 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~ 374 (654)
.+..+...+...|++++|...+..+. .++..++..+...|.+.|++++|.+.|++... .+...|..+...|..
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 34456667889999999999998773 56888999999999999999999999998764 467899999999999
Q ss_pred cCChhHHHHHHHHHhhcCCCCCH----------------HHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006246 375 HGRADDAIELFFKMQREKMRPDR----------------ITFACVLSACAHAGMIDRGLQALTYMQQ 425 (654)
Q Consensus 375 ~g~~~~A~~l~~~m~~~g~~p~~----------------~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 425 (654)
.|++++|++.|++..+.... +. ..+..+..++...|++++|...|+...+
T Consensus 84 ~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRG-NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTT-CSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHhCCC-ccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 99999999999999886322 22 4555556666666666666666666553
No 112
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.61 E-value=9.5e-07 Score=79.44 Aligned_cols=153 Identities=12% Similarity=0.079 Sum_probs=86.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHH--HH
Q 006246 233 YNAMISGFARFGRFEEARKLFNEMND---KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAA--CA 307 (654)
Q Consensus 233 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~--~~ 307 (654)
+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..... |+.. +..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~-~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNS-YKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChH-HHHHHHHHHHH
Confidence 44455556666667777777766654 245567777777777777777777777665442 2222 2221111 11
Q ss_pred hcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCCCC-----HHHHHHHHHHHHHcCChhHHH
Q 006246 308 SLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKE-----VFTWNAMIGGLAMHGRADDAI 382 (654)
Q Consensus 308 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~-----~~~~~~li~~~~~~g~~~~A~ 382 (654)
..+....+...++.+.+.. +.+...+..+...|.+.|++++|...|+++...+ ...|..+...+...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 1122233455555555543 2345556666666666666666666666654421 335666666666666666666
Q ss_pred HHHHHHh
Q 006246 383 ELFFKMQ 389 (654)
Q Consensus 383 ~l~~~m~ 389 (654)
..|++.+
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666544
No 113
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.61 E-value=1.1e-05 Score=85.10 Aligned_cols=365 Identities=8% Similarity=-0.016 Sum_probs=215.5
Q ss_pred CC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHhcccccCCChHHHHHHHhcCC--CCCcchHHHHHHHHHhCCC-chHHH
Q 006246 43 HT-SWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVH--KPNVFVWNSVLRACLEHNE-PWRVI 118 (654)
Q Consensus 43 ~~-~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~-~~~A~ 118 (654)
.| ++..++++++.++..- | .|+++.|+.+|++.. .|++..|...+....+.+. .+...
T Consensus 7 ~~~~i~~aR~vyer~l~~~--P----------------~~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~ 68 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLY--M----------------SKDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLY 68 (493)
T ss_dssp -----CCHHHHHHHHHHHH--H----------------TTCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTH
T ss_pred cCcchHHHHHHHHHHHHHC--C----------------CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHH
Confidence 34 3677777777776542 1 168999999999877 4899999999987776663 45677
Q ss_pred HHHHHhHhC-CCCC-CcccHHHHHHHHh----ccCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCHHHHHHHHh
Q 006246 119 SLYSEMVGV-DSKP-NKFTYPTVFKACS----ITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILD 192 (654)
Q Consensus 119 ~~~~~m~~~-g~~p-~~~t~~~ll~~~~----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 192 (654)
.+|+..... |..| +...|...+.-+. ..++.+.++.+++.+++.....-...|......- .......+.++..
T Consensus 69 ~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE-~~~~~~~~~~~~~ 147 (493)
T 2uy1_A 69 EVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFE-LELNKITGKKIVG 147 (493)
T ss_dssp HHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHH-HHHCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHH-HHhccccHHHHHH
Confidence 788887763 4334 4455665555443 2356788999999999742111112222222211 1111222222221
Q ss_pred cCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC----CCcchHHHHHHHHHhcC--C-----HHHHHHHHHhcCC---
Q 006246 193 DGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD----KNTGSYNAMISGFARFG--R-----FEEARKLFNEMND--- 258 (654)
Q Consensus 193 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g--~-----~~~A~~~~~~~~~--- 258 (654)
+ .. +.+..|...++.+.. .+...|...+..-...+ - .+.+..+|+++..
T Consensus 148 ~---------------~~--~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p 210 (493)
T 2uy1_A 148 D---------------TL--PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFY 210 (493)
T ss_dssp H---------------HH--HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred H---------------Hh--HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCC
Confidence 1 11 122223333322221 12334544444322211 0 2345667777654
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCC-----------
Q 006246 259 KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSI----------- 327 (654)
Q Consensus 259 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----------- 327 (654)
.+...|...+.-+.+.|+.++|..+|++.... |....+.. .++.....+.. ++.+.+.-.
T Consensus 211 ~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~ 281 (493)
T 2uy1_A 211 YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVF 281 (493)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHHHHHTC----------C
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHHHHHHHhhccchhhhhc
Confidence 35678888888889999999999999999987 55544332 23332222222 333322110
Q ss_pred -CCchhHHHHHHHHHHHcCCHHHHHHHHhhcCCC--CHHHHHHHHHHHHH-cCChhHHHHHHHHHhhcCCCCCHHHHHHH
Q 006246 328 -CVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK--EVFTWNAMIGGLAM-HGRADDAIELFFKMQREKMRPDRITFACV 403 (654)
Q Consensus 328 -~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~--~~~~~~~li~~~~~-~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 403 (654)
.....+|...+..+.+.+.++.|+++|++...+ +...|-.....-.. .++.+.|..+|+...+.- +-+...+...
T Consensus 282 ~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~y 360 (493)
T 2uy1_A 282 SKELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEF 360 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHH
Confidence 112355667777777788999999999998433 22334322222222 336999999999998863 2233445556
Q ss_pred HHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC
Q 006246 404 LSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459 (654)
Q Consensus 404 l~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (654)
+.-..+.|+.+.|..+|+.+. .....|...++.-.+.|+.+.+.++++++
T Consensus 361 id~e~~~~~~~~aR~l~er~~------k~~~lw~~~~~fE~~~G~~~~~r~v~~~~ 410 (493)
T 2uy1_A 361 FLFLLRIGDEENARALFKRLE------KTSRMWDSMIEYEFMVGSMELFRELVDQK 410 (493)
T ss_dssp HHHHHHHTCHHHHHHHHHHSC------CBHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 666778899999999999862 24567888888778889999998888765
No 114
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.55 E-value=1.8e-07 Score=81.79 Aligned_cols=140 Identities=11% Similarity=0.021 Sum_probs=96.9
Q ss_pred HHHHHHHcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCH
Q 006246 337 LVDMYAKCGRLDMAWKVFEDMKMK---EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMI 413 (654)
Q Consensus 337 li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 413 (654)
|..++...|++++|++.++..... +...+-.+...|.+.|++++|++.|++.++.. +-+..+|..+...+...|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 445566677788888888777664 34556677888888888888888888887753 22566788888888888888
Q ss_pred HHHHHHHHHHHHHcCCCC-CcchHHHHHHHHHHcCCHHHHHHH-HHhC-CCCC-CHHHHHHHHHHHHHhCC
Q 006246 414 DRGLQALTYMQQMYGIDP-EVEHYGCIVDLLGRAGYLAEAEEV-ISSM-PMEP-NAAVWEALLGACRKHGE 480 (654)
Q Consensus 414 ~~a~~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~-~~~m-~~~p-~~~~~~~ll~~~~~~g~ 480 (654)
++|...|++..+. .| +...|..+..+|.+.|++++|.+. +++. ...| ++.+|......+...|+
T Consensus 82 ~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVEL---NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 8888888888763 44 356778888888888888776654 4554 3344 56667666666555553
No 115
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.55 E-value=2.5e-06 Score=79.27 Aligned_cols=168 Identities=10% Similarity=-0.024 Sum_probs=102.0
Q ss_pred HHHHHHhcCC-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcC----ChhHHHHHHHHHH
Q 006246 249 ARKLFNEMND-KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG----ALDQGIWIHDHVK 323 (654)
Q Consensus 249 A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g----~~~~a~~~~~~~~ 323 (654)
|.+.|++..+ .+..++..+...|...+++++|++.|++..+.| +...+..+...+.. + +.++|.+.+....
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 3444444333 355666666666666777777777777766654 33444445555554 4 6667777777666
Q ss_pred HcCCCCchhHHHHHHHHHHH----cCCHHHHHHHHhhcCCCC-----HHHHHHHHHHHHH----cCChhHHHHHHHHHhh
Q 006246 324 RNSICVDAVLGTALVDMYAK----CGRLDMAWKVFEDMKMKE-----VFTWNAMIGGLAM----HGRADDAIELFFKMQR 390 (654)
Q Consensus 324 ~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~m~~~~-----~~~~~~li~~~~~----~g~~~~A~~l~~~m~~ 390 (654)
+.| ++..+..|..+|.. .+++++|.+.|++....+ ..++..|...|.. .++.++|+.+|++..+
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 554 44555666666665 667777777777666532 4666777777766 6667777777777766
Q ss_pred cCCCCCHHHHHHHHHHHHcc-C-----CHHHHHHHHHHHHH
Q 006246 391 EKMRPDRITFACVLSACAHA-G-----MIDRGLQALTYMQQ 425 (654)
Q Consensus 391 ~g~~p~~~t~~~ll~~~~~~-g-----~~~~a~~~~~~~~~ 425 (654)
. .++...+..|...|... | +.++|..+|+...+
T Consensus 158 ~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 158 L--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp T--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred c--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 5 12333455555555432 2 67777777777666
No 116
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.53 E-value=1.2e-05 Score=78.99 Aligned_cols=158 Identities=12% Similarity=-0.058 Sum_probs=120.9
Q ss_pred HHHHHHHcCCHHHHHHHHhhcCCC-----C----HHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCC-CC----HHHHHH
Q 006246 337 LVDMYAKCGRLDMAWKVFEDMKMK-----E----VFTWNAMIGGLAMHGRADDAIELFFKMQREKMR-PD----RITFAC 402 (654)
Q Consensus 337 li~~y~~~g~~~~A~~~~~~m~~~-----~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~ 402 (654)
.+..+...|++++|...+++.... + ...+..+...+...|++++|+..|++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 467788899999999999887652 1 113344666777778999999999999874322 23 236888
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHHcCCC----CC-cchHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC-HHHHH
Q 006246 403 VLSACAHAGMIDRGLQALTYMQQMYGID----PE-VEHYGCIVDLLGRAGYLAEAEEVISSM-------PMEPN-AAVWE 469 (654)
Q Consensus 403 ll~~~~~~g~~~~a~~~~~~~~~~~g~~----p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~ 469 (654)
+...|...|++++|..+|+++.+...-. +. ..+|..+...|.+.|++++|++.+++. ...+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999999999988532111 11 336788999999999999999999876 12222 77899
Q ss_pred HHHHHHHHhCC-hHHHHHHHHHHHhc
Q 006246 470 ALLGACRKHGE-VEFGERLGKILLEM 494 (654)
Q Consensus 470 ~ll~~~~~~g~-~~~a~~~~~~~~~~ 494 (654)
.+...+...|+ +++|...+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 99999999995 69999999998874
No 117
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.52 E-value=6.8e-06 Score=77.12 Aligned_cols=60 Identities=13% Similarity=0.097 Sum_probs=43.6
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006246 231 GSYNAMISGFARFGRFEEARKLFNEMND--KD----EITWSAIIDGYTKDGYYKEALEVFNEMQRD 290 (654)
Q Consensus 231 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 290 (654)
..+..+...+.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|+..|+++.+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~ 70 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 70 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3455566777788888888888887763 22 245777777888888888888888888765
No 118
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.49 E-value=2.2e-06 Score=84.28 Aligned_cols=162 Identities=11% Similarity=-0.060 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhcCCC---C------HHHHHHHHHHHHHcCChhHHHHHHHHHhhcCC---CCC--HH
Q 006246 333 LGTALVDMYAKCGRLDMAWKVFEDMKMK---E------VFTWNAMIGGLAMHGRADDAIELFFKMQREKM---RPD--RI 398 (654)
Q Consensus 333 ~~~~li~~y~~~g~~~~A~~~~~~m~~~---~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~~ 398 (654)
.+...+..|...|++++|.+.+++.... . ...+..+...+...|++++|+..|++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4445677888899999999888755431 1 12344566667788899999999999876321 122 34
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCC-----cchHHHHHHHHHHcCCHHHHHHHHHhC-C------CCC-CH
Q 006246 399 TFACVLSACAHAGMIDRGLQALTYMQQMYGIDPE-----VEHYGCIVDLLGRAGYLAEAEEVISSM-P------MEP-NA 465 (654)
Q Consensus 399 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~------~~p-~~ 465 (654)
+++.+...|...|++++|..+|+++.+.....|+ ..+|..+...|.+.|++++|++.+++. . ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888889999999999999999998743222333 257888999999999999999999875 1 111 16
Q ss_pred HHHHHHHHHHHHhCChHHH-HHHHHHHHhc
Q 006246 466 AVWEALLGACRKHGEVEFG-ERLGKILLEM 494 (654)
Q Consensus 466 ~~~~~ll~~~~~~g~~~~a-~~~~~~~~~~ 494 (654)
.+|..+...|...|++++| ...+++++++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 7889999999999999999 8888888764
No 119
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.49 E-value=1.5e-06 Score=75.62 Aligned_cols=112 Identities=4% Similarity=-0.086 Sum_probs=90.4
Q ss_pred CCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 006246 394 RPDR-ITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-PMEP-NAAVWEA 470 (654)
Q Consensus 394 ~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ 470 (654)
.|+. ..+..+...+.+.|++++|...|+.+.+. -+.+...|..+..+|.+.|++++|++.|++. ...| ++..|..
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 4543 46777888889999999999999999874 2335678888999999999999999999987 3334 5788999
Q ss_pred HHHHHHHhCChHHHHHHHHHHHhcCCCCCCchHHHHH
Q 006246 471 LLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKM 507 (654)
Q Consensus 471 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~a~~~ 507 (654)
+..++...|++++|+..|++++++.|++..-+.|..+
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~~~~~~~~~A~~l 146 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQSY 146 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999999999999999999999987533333333
No 120
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.48 E-value=1.2e-06 Score=73.83 Aligned_cols=99 Identities=9% Similarity=-0.036 Sum_probs=74.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 006246 399 TFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-PMEP-NAAVWEALLGACR 476 (654)
Q Consensus 399 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 476 (654)
.+......+.+.|++++|++.|++..+. -+.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 4555666677777777777777777653 2334566777777777777888777777765 2333 5788999999999
Q ss_pred HhCChHHHHHHHHHHHhcCCCCC
Q 006246 477 KHGEVEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 477 ~~g~~~~a~~~~~~~~~~~p~~~ 499 (654)
..|++++|+..++++++++|++.
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~ 115 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNE 115 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCH
Confidence 99999999999999999999984
No 121
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.43 E-value=3.1e-06 Score=91.75 Aligned_cols=146 Identities=6% Similarity=-0.065 Sum_probs=72.4
Q ss_pred CCHHHHHHHHHhcCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 006246 244 GRFEEARKLFNEMNDK---DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHD 320 (654)
Q Consensus 244 g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 320 (654)
|++++|.+.|++..+. +...|..+...|.+.|++++|++.|++..+.. +.+...+..+..++...|++++|.+.++
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5566666666665532 45566666666666666666666666666542 2234455555555566666666666666
Q ss_pred HHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHc---CChhHHHHHHHHHhhc
Q 006246 321 HVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMH---GRADDAIELFFKMQRE 391 (654)
Q Consensus 321 ~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~---g~~~~A~~l~~~m~~~ 391 (654)
++.+.. +.+...+..+...|.+.|++++|.+.|++..+ .+...+..+...+... |+.++|.+.+++..+.
T Consensus 82 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 82 QASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 655543 22344555555555555555555555555432 2344555555555555 5555555555555544
No 122
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.42 E-value=8e-05 Score=73.65 Aligned_cols=221 Identities=13% Similarity=0.095 Sum_probs=146.6
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCc-chHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHc-C-C
Q 006246 271 YTKDGYYKEALEVFNEMQRDKIKPRK-FVLSCVLAACASLG-ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKC-G-R 346 (654)
Q Consensus 271 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~-g-~ 346 (654)
....+..++|++++++++.. .|+. ..++.--..+...+ .++++.+.++.++... +-+..+|+.-...+.+. + +
T Consensus 64 ~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSC
T ss_pred HHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCC
Confidence 33444556677777777665 3333 33444444455556 4777777777777655 34566666655555555 5 7
Q ss_pred HHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChh--------HHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCC---
Q 006246 347 LDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRAD--------DAIELFFKMQREKMRPDRITFACVLSACAHAGM--- 412 (654)
Q Consensus 347 ~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~--- 412 (654)
+++++++++++.+ +|..+|+.-.-.+.+.|.++ ++++.++++++..+. |...|+.....+.+.+.
T Consensus 141 ~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp CHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccccc
Confidence 7888888888776 36677777666666666666 888999998887543 77778777777777775
Q ss_pred ----HHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCH--------------------HHHHHHHHhCC-C------
Q 006246 413 ----IDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYL--------------------AEAEEVISSMP-M------ 461 (654)
Q Consensus 413 ----~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~m~-~------ 461 (654)
++++++.+.++... -+-|...|+-+-.++.+.|+. .+..++..++. .
T Consensus 220 ~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDT 297 (349)
T ss_dssp CHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSC
T ss_pred chHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccccc
Confidence 68888888888763 234566677777777776653 44455555552 1
Q ss_pred -CCCHHHHHHHHHHHHHhCChHHHHHHHHHHH-hcCCC
Q 006246 462 -EPNAAVWEALLGACRKHGEVEFGERLGKILL-EMEPQ 497 (654)
Q Consensus 462 -~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~p~ 497 (654)
.+....+..|...|...|+.++|.++++.+. +.+|-
T Consensus 298 ~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpi 335 (349)
T 3q7a_A 298 PLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQM 335 (349)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGG
T ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChH
Confidence 2578889999999999999999999999986 45664
No 123
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.42 E-value=1e-06 Score=76.75 Aligned_cols=105 Identities=9% Similarity=-0.077 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 006246 397 RITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-PMEP-NAAVWEALLGA 474 (654)
Q Consensus 397 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~ 474 (654)
...+..+...+...|++++|...|+..... -+.+...|..+..+|.+.|++++|++.|++. ...| ++..|..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 345666667777788888888888877763 2335566777778888888888888888876 2233 57788889999
Q ss_pred HHHhCChHHHHHHHHHHHhcCCCCCCchH
Q 006246 475 CRKHGEVEFGERLGKILLEMEPQNRRCDD 503 (654)
Q Consensus 475 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 503 (654)
+...|++++|+..+++++++.|+++.+..
T Consensus 99 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 99999999999999999999998875543
No 124
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.41 E-value=2.1e-06 Score=77.13 Aligned_cols=134 Identities=10% Similarity=0.094 Sum_probs=99.1
Q ss_pred HHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHH-HHHcCCH--
Q 006246 373 AMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDL-LGRAGYL-- 449 (654)
Q Consensus 373 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~-~~~~g~~-- 449 (654)
...|++++|+..|++..+.. +.+...+..+...+...|++++|...|+++.+.. +.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 34677888888888877753 3356678888888888889999998888887742 2345667777777 7788888
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCCchHHHHHHH
Q 006246 450 AEAEEVISSM-PMEP-NAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRK 509 (654)
Q Consensus 450 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~a~~~~~ 509 (654)
++|...+++. ...| +...|..+...+...|++++|...+++++++.|++...........
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i~ 159 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESIN 159 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Confidence 9999988876 2334 5788899999999999999999999999999999874433333333
No 125
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.39 E-value=2.6e-06 Score=78.15 Aligned_cols=154 Identities=12% Similarity=0.009 Sum_probs=93.8
Q ss_pred HcCCHHHHHH---HHhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhh----cCCCC-CHHHHHHHHHHHHccCCHH
Q 006246 343 KCGRLDMAWK---VFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQR----EKMRP-DRITFACVLSACAHAGMID 414 (654)
Q Consensus 343 ~~g~~~~A~~---~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p-~~~t~~~ll~~~~~~g~~~ 414 (654)
..|++++|.+ .+..-+.....++..+...+...|++++|+..+++..+ .+..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3466666666 44332223445666666667777777777777766654 11112 2235666666777777777
Q ss_pred HHHHHHHHHHHHcCCCC-C----cchHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHhCCh
Q 006246 415 RGLQALTYMQQMYGIDP-E----VEHYGCIVDLLGRAGYLAEAEEVISSM----PMEPN----AAVWEALLGACRKHGEV 481 (654)
Q Consensus 415 ~a~~~~~~~~~~~g~~p-~----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~ 481 (654)
+|...+++..+...-.+ + ...+..+...+...|++++|.+.+++. +..++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 77777777665322122 1 234666777777788888887777664 11112 33457778888888899
Q ss_pred HHHHHHHHHHHhcCC
Q 006246 482 EFGERLGKILLEMEP 496 (654)
Q Consensus 482 ~~a~~~~~~~~~~~p 496 (654)
++|...+++++++..
T Consensus 164 ~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 164 LEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 998888888887543
No 126
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.38 E-value=9e-07 Score=84.68 Aligned_cols=126 Identities=14% Similarity=0.023 Sum_probs=89.8
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCC----cchHHHHHH
Q 006246 366 NAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPE----VEHYGCIVD 441 (654)
Q Consensus 366 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~----~~~~~~li~ 441 (654)
-.....+...|++++|.++|..+...+ |+......+...+.+.+++++|+..|+...+ .|+ ...+..+..
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~----~~d~~~~~~a~~~LG~ 179 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGK----WPDKFLAGAAGVAHGV 179 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG----CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhc----cCCcccHHHHHHHHHH
Confidence 345566777788888888887776643 5444444555567778888888888864432 222 235667778
Q ss_pred HHHHcCCHHHHHHHHHhCC---CCCC--HHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Q 006246 442 LLGRAGYLAEAEEVISSMP---MEPN--AAVWEALLGACRKHGEVEFGERLGKILLEMEPQ 497 (654)
Q Consensus 442 ~~~~~g~~~~A~~~~~~m~---~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 497 (654)
++.+.|++++|++.|++.. ..|. ...+..+..++.+.|+.++|...|+++++.+|+
T Consensus 180 al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 180 AAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 8888888888888888762 2143 346777888899999999999999999999986
No 127
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.37 E-value=9.8e-06 Score=79.51 Aligned_cols=58 Identities=12% Similarity=0.165 Sum_probs=29.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCcc-----hHHHHHHHHHhcCChhHHHHHHHHHH
Q 006246 266 AIIDGYTKDGYYKEALEVFNEMQRDKIKPRKF-----VLSCVLAACASLGALDQGIWIHDHVK 323 (654)
Q Consensus 266 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-----t~~~ll~~~~~~g~~~~a~~~~~~~~ 323 (654)
.+...+...|++++|+..|++........+.. ++..+..++...|++++|...+..+.
T Consensus 120 ~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 182 (293)
T 3u3w_A 120 YVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555555667777777777766532221111 34444444555555555555554444
No 128
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.35 E-value=0.00011 Score=71.90 Aligned_cols=144 Identities=8% Similarity=-0.036 Sum_probs=67.5
Q ss_pred CCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChH--HHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCC------h
Q 006246 244 GRFEEARKLFNEMND---KDEITWSAIIDGYTKDGYYK--EALEVFNEMQRDKIKPRKFVLSCVLAACASLGA------L 312 (654)
Q Consensus 244 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~------~ 312 (654)
+++++++.+++.+.+ +|..+|+.-.-.+.+.|.++ ++++.++++.+.. +-|...|+.-...+...+. +
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhH
Confidence 445555555555542 34555555555555556555 6666666666543 2233344333333333333 4
Q ss_pred hHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHH-HHHHHhhcCC------CCHHHHHHHHHHHHHcCChhHHHHHH
Q 006246 313 DQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDM-AWKVFEDMKM------KEVFTWNAMIGGLAMHGRADDAIELF 385 (654)
Q Consensus 313 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~-A~~~~~~m~~------~~~~~~~~li~~~~~~g~~~~A~~l~ 385 (654)
+++.+.+..++... +.|...|+-+...+.+.|+..+ +..+.+++.. ++...+..+...|.+.|+.++|++++
T Consensus 203 ~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 203 DEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 44444444444443 2344445444444444444222 2223333221 23344444555555555555555555
Q ss_pred HHHh
Q 006246 386 FKMQ 389 (654)
Q Consensus 386 ~~m~ 389 (654)
+.+.
T Consensus 282 ~~l~ 285 (306)
T 3dra_A 282 DLLK 285 (306)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 129
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.31 E-value=1.7e-06 Score=84.42 Aligned_cols=188 Identities=12% Similarity=-0.054 Sum_probs=107.2
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHH
Q 006246 296 KFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGL 372 (654)
Q Consensus 296 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~ 372 (654)
...+..+...+...|++++|...+..+++.. +.+...+..+...|.+.|++++|.+.|++... .+...|..+..+|
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3455666677777888888888888777764 33666777777778888888888888877665 2566777777778
Q ss_pred HHcCChhHHHHHHHHHhhcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHH
Q 006246 373 AMHGRADDAIELFFKMQREKMRPDR-ITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAE 451 (654)
Q Consensus 373 ~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~ 451 (654)
...|++++|+..|++..+.. |+. ..+...+....+ ..++.. +..... ....++......+... ..|+.++
T Consensus 83 ~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~-~~~~~~-~~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKR-WNSIEE-RRIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHH-HHHHHH-TCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHH-HHHHHH-HHHhhhHHHHHHHHHH--HHHHHHH
Confidence 88888888888887776642 221 111111111111 111111 122222 1334444444444332 2577777
Q ss_pred HHHHHHhC-CCCCCH-HHHHHHHHHHHHh-CChHHHHHHHHHHHh
Q 006246 452 AEEVISSM-PMEPNA-AVWEALLGACRKH-GEVEFGERLGKILLE 493 (654)
Q Consensus 452 A~~~~~~m-~~~p~~-~~~~~ll~~~~~~-g~~~~a~~~~~~~~~ 493 (654)
|++.+++. ...|+. .....+...+... +.+++|.++|+++.+
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 77777665 444543 3333333333333 445666666665544
No 130
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.31 E-value=1e-05 Score=71.29 Aligned_cols=129 Identities=9% Similarity=-0.036 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHH
Q 006246 362 VFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVD 441 (654)
Q Consensus 362 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~ 441 (654)
...|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+++..+. .+.+...+..+..
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~ 89 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHH
Confidence 3456677777788888888888888877753 235667777777888888888888888888764 2334567777888
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-CHHHHHH--HHHHHHHhCChHHHHHHHHHHHh
Q 006246 442 LLGRAGYLAEAEEVISSM-PMEP-NAAVWEA--LLGACRKHGEVEFGERLGKILLE 493 (654)
Q Consensus 442 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~--ll~~~~~~g~~~~a~~~~~~~~~ 493 (654)
++.+.|++++|.+.+++. ...| +...+.. ++..+...|++++|...+++..+
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 888888888888888776 2223 4555533 33447778888888888877654
No 131
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.30 E-value=4.5e-06 Score=76.51 Aligned_cols=48 Identities=13% Similarity=0.045 Sum_probs=25.1
Q ss_pred hcCCHHHHHH---HHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006246 242 RFGRFEEARK---LFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQR 289 (654)
Q Consensus 242 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 289 (654)
..|++++|.+ ++..-+......+..+...+...|++++|+..+++...
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 54 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQ 54 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 3455556655 44332222344566666666666666666666666544
No 132
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.29 E-value=1.1e-05 Score=77.06 Aligned_cols=123 Identities=10% Similarity=-0.010 Sum_probs=71.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcCC--CCcchHHHHHHHHHhcCCHHHHHHHHHhcCCC-C----HhHHHHHHHHHHhcCC
Q 006246 204 ALIDGYLKCGDIEGAKELFKSTKD--KNTGSYNAMISGFARFGRFEEARKLFNEMNDK-D----EITWSAIIDGYTKDGY 276 (654)
Q Consensus 204 ~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~----~~~~~~li~~~~~~g~ 276 (654)
.+...+...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+..... + ...+..+..++.+.|+
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~ 186 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLAL 186 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCC
Confidence 344555666666666666666654 32224444555666667777777777655432 1 2245666667777777
Q ss_pred hHHHHHHHHHHHhCCCCCCc--chHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 006246 277 YKEALEVFNEMQRDKIKPRK--FVLSCVLAACASLGALDQGIWIHDHVKRNS 326 (654)
Q Consensus 277 ~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 326 (654)
+++|+..|++.......|.. ........++.+.|+.++|...|+++....
T Consensus 187 ~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 187 FTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 77777777766643221431 133344455666667777777666666654
No 133
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.27 E-value=2.8e-05 Score=76.24 Aligned_cols=27 Identities=15% Similarity=0.101 Sum_probs=17.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006246 264 WSAIIDGYTKDGYYKEALEVFNEMQRD 290 (654)
Q Consensus 264 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 290 (654)
+...+..+...|++++|++.+++..+.
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~ 104 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKK 104 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcc
Confidence 344556666777777777777666654
No 134
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.25 E-value=1.3e-05 Score=70.70 Aligned_cols=124 Identities=6% Similarity=-0.090 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 006246 332 VLGTALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACA 408 (654)
Q Consensus 332 ~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 408 (654)
..+..+...|...|++++|...|++... .+...|..+...+...|++++|+..|++..+.. +.+...+..+..++.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 3455566667777777777777776543 356677777777778888888888887777653 235566777777777
Q ss_pred ccCCHHHHHHHHHHHHHHcCCCCCcchH--HHHHHHHHHcCCHHHHHHHHHh
Q 006246 409 HAGMIDRGLQALTYMQQMYGIDPEVEHY--GCIVDLLGRAGYLAEAEEVISS 458 (654)
Q Consensus 409 ~~g~~~~a~~~~~~~~~~~g~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~ 458 (654)
..|++++|...|+++.+.. +.+...+ ..++..+.+.|++++|++.+++
T Consensus 93 ~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 8888888888888777641 1222333 3333446677788888777765
No 135
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.25 E-value=7e-06 Score=80.02 Aligned_cols=178 Identities=8% Similarity=-0.084 Sum_probs=119.4
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 006246 330 DAVLGTALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSA 406 (654)
Q Consensus 330 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 406 (654)
+...+..+...|.+.|++++|...|++... .+...|..+...|.+.|++++|+..+++..+.. +.+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 455677788889999999999999987764 377888999999999999999999999988763 2356678888888
Q ss_pred HHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChHHHHH
Q 006246 407 CAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGER 486 (654)
Q Consensus 407 ~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~ 486 (654)
+...|++++|...|+...+...-.+ ..+...+....+.++...... .......++..+...+.. + ..|+.++|.+
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~-l-~~~~~~~A~~ 156 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKEQR--LNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTR-L-IAAERERELE 156 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTT--CCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHH-H-HHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHhCccch--hhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHH-H-HHHHHHHHHH
Confidence 9999999999999988876421111 112222222222222222222 222233344444444433 2 3688899999
Q ss_pred HHHHHHhcCCCCC---------------CchHHHHHHHHHHh
Q 006246 487 LGKILLEMEPQNR---------------RCDDVAKMRKLMKE 513 (654)
Q Consensus 487 ~~~~~~~~~p~~~---------------~~~~a~~~~~~m~~ 513 (654)
.++++++++|++. .++++.+++....+
T Consensus 157 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 157 ECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp TTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999988864 45566666665543
No 136
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.23 E-value=2.3e-05 Score=64.91 Aligned_cols=34 Identities=29% Similarity=0.421 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Q 006246 465 AAVWEALLGACRKHGEVEFGERLGKILLEMEPQN 498 (654)
Q Consensus 465 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 498 (654)
..+|..+...+...|++++|...++++++..|++
T Consensus 77 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 110 (125)
T 1na0_A 77 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 110 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 3344444444444444444444444444444443
No 137
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.22 E-value=0.0001 Score=72.59 Aligned_cols=225 Identities=10% Similarity=0.045 Sum_probs=142.9
Q ss_pred hcCChH-HHHHHHHHHHhCCCCCCcch-HHHHHHHHHhcCC----------hhHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 006246 273 KDGYYK-EALEVFNEMQRDKIKPRKFV-LSCVLAACASLGA----------LDQGIWIHDHVKRNSICVDAVLGTALVDM 340 (654)
Q Consensus 273 ~~g~~~-~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 340 (654)
+.|.++ +|++++..++.. .|+..| ++.--..+...+. ++++..++..+.... +-+..+|+.-.-.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 41 QAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 444443 677777777654 344333 2222122222221 566777777777655 3466777766666
Q ss_pred HHHcC--CHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCC-hhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHcc----
Q 006246 341 YAKCG--RLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGR-ADDAIELFFKMQREKMRPDRITFACVLSACAHA---- 410 (654)
Q Consensus 341 y~~~g--~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~---- 410 (654)
+.+.| .+++++++++++.+ +|..+|+.-.-.+...|. ++++++.+.++++..+. |...|+.....+.+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC
T ss_pred HhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhcc
Confidence 67777 47888888887765 477788887777777787 58888888888887533 666666655555444
Q ss_pred ----------CCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHc-----------CCHHHHHHHHHhC-CCCCCHHHH
Q 006246 411 ----------GMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRA-----------GYLAEAEEVISSM-PMEPNAAVW 468 (654)
Q Consensus 411 ----------g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m-~~~p~~~~~ 468 (654)
+.++++++.+...... -+-|...|+-+-..+.+. +.++++++.++++ ...||. .|
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~w 273 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-KW 273 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HH
T ss_pred ccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-ch
Confidence 4577888888888763 233455566555555554 4678888888877 455653 45
Q ss_pred HHHHHHH-----HHhCChHHHHHHHHHHHhcCCCCC-CchHH
Q 006246 469 EALLGAC-----RKHGEVEFGERLGKILLEMEPQNR-RCDDV 504 (654)
Q Consensus 469 ~~ll~~~-----~~~g~~~~a~~~~~~~~~~~p~~~-~~~~a 504 (654)
..+..+. ...|..++....+.++.+++|-.. +|.+.
T Consensus 274 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~ 315 (331)
T 3dss_A 274 CLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 315 (331)
T ss_dssp HHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 4322222 235777888899999999999765 45443
No 138
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.22 E-value=1e-05 Score=69.55 Aligned_cols=101 Identities=9% Similarity=-0.073 Sum_probs=73.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 006246 399 TFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-PMEP-NAAVWEALLGACR 476 (654)
Q Consensus 399 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 476 (654)
.+..+...+.+.|++++|...|+..... -+.+...|..+..+|.+.|++++|+..|++. ...| ++..|..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 4455556667777777777777777663 1234556667777777788888888777766 2223 5677888888899
Q ss_pred HhCChHHHHHHHHHHHhcCCCCCCc
Q 006246 477 KHGEVEFGERLGKILLEMEPQNRRC 501 (654)
Q Consensus 477 ~~g~~~~a~~~~~~~~~~~p~~~~~ 501 (654)
..|++++|...+++++++.|+++.+
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~ 122 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAH 122 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGG
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcch
Confidence 9999999999999999998887733
No 139
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.21 E-value=7.4e-06 Score=71.24 Aligned_cols=102 Identities=7% Similarity=-0.111 Sum_probs=68.4
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHH
Q 006246 361 EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIV 440 (654)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li 440 (654)
+...|..+...+.+.|++++|+..|++..+.. +-+...|..+..++...|++++|+..|++..+. -+.+...|..+.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--~P~~~~~~~~lg 111 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--GKNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CCCCcHHHHHHH
Confidence 44566667777777777777777777777653 224556677777777777777777777777663 122355677777
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCCCH
Q 006246 441 DLLGRAGYLAEAEEVISSM-PMEPNA 465 (654)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~m-~~~p~~ 465 (654)
.+|.+.|++++|++.|++. ...|+.
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 7777777777777777765 333444
No 140
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.19 E-value=1.5e-05 Score=66.10 Aligned_cols=115 Identities=19% Similarity=0.200 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHH
Q 006246 362 VFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVD 441 (654)
Q Consensus 362 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~ 441 (654)
...|..+...+...|++++|+++|+++.+.. +.+..++..+...+...|++++|..+++.+.+. .+.+...+..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHH
Confidence 6788999999999999999999999998864 346778888999999999999999999999874 2345678889999
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhC
Q 006246 442 LLGRAGYLAEAEEVISSM-PMEP-NAAVWEALLGACRKHG 479 (654)
Q Consensus 442 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g 479 (654)
.|...|++++|.+.++++ ...| +...+..+...+...|
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 999999999999999987 2333 5666776666665543
No 141
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.18 E-value=1.9e-05 Score=66.38 Aligned_cols=93 Identities=9% Similarity=0.003 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 006246 364 TWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLL 443 (654)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~ 443 (654)
.|......|.+.|++++|++.|++.++.. +.+...|..+..++.+.|++++|+..|++..+. -+.+...|..+..+|
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRL--DSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh--hhhhhHHHHHHHHHH
Confidence 34444555555555555555555555432 223445555555555555555555555555542 122234455555555
Q ss_pred HHcCCHHHHHHHHHhC
Q 006246 444 GRAGYLAEAEEVISSM 459 (654)
Q Consensus 444 ~~~g~~~~A~~~~~~m 459 (654)
...|++++|++.|++.
T Consensus 92 ~~~~~~~~A~~~~~~a 107 (126)
T 4gco_A 92 VAMREWSKAQRAYEDA 107 (126)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHH
Confidence 5555555555555544
No 142
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.18 E-value=2.1e-05 Score=69.45 Aligned_cols=102 Identities=11% Similarity=0.007 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 006246 397 RITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-PMEP-NAAVWEALLGA 474 (654)
Q Consensus 397 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~ 474 (654)
...+..+...+...|++++|+..|++..+. .+.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 345555666666667777777777666653 1224556667777777777777777777765 2233 57888889999
Q ss_pred HHHhCChHHHHHHHHHHHhcCCCCCC
Q 006246 475 CRKHGEVEFGERLGKILLEMEPQNRR 500 (654)
Q Consensus 475 ~~~~g~~~~a~~~~~~~~~~~p~~~~ 500 (654)
+...|++++|+..++++++++|++..
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchH
Confidence 99999999999999999999999874
No 143
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.17 E-value=3e-05 Score=64.83 Aligned_cols=116 Identities=15% Similarity=0.033 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHH
Q 006246 362 VFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVD 441 (654)
Q Consensus 362 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~ 441 (654)
...|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++...+. .+.+...+..+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHHH
Confidence 3445555566666666666666666665542 224445555566666666666666666666552 1222445555555
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCC
Q 006246 442 LLGRAGYLAEAEEVISSM-PMEP-NAAVWEALLGACRKHGE 480 (654)
Q Consensus 442 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~ 480 (654)
.+.+.|++++|.+.+++. ...| +...+..+...+...|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 566666666666655554 1122 44555555555555544
No 144
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.13 E-value=2.7e-05 Score=77.97 Aligned_cols=131 Identities=8% Similarity=-0.061 Sum_probs=98.6
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCC--------------HHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Q 006246 361 EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPD--------------RITFACVLSACAHAGMIDRGLQALTYMQQM 426 (654)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--------------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 426 (654)
+...|..+...|.+.|++++|+..|++.++...... ...|..+..++.+.|++++|+..++++.+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345677777777788888888888888776532211 367888888888888888888888888874
Q ss_pred cCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChHHH-HHHHHHHHh
Q 006246 427 YGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-PMEP-NAAVWEALLGACRKHGEVEFG-ERLGKILLE 493 (654)
Q Consensus 427 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a-~~~~~~~~~ 493 (654)
-+.+...|..+..+|...|++++|++.|++. ...| +..++..+...+...|+.++| ...++++++
T Consensus 226 --~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 226 --DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2335667888888888899999999888876 3334 577888888889999988888 556777765
No 145
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.13 E-value=1.5e-05 Score=68.83 Aligned_cols=65 Identities=14% Similarity=0.080 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCC-HHHH----HHHHHHHHHhCChHHHHHHHHHHHhcCCCCC
Q 006246 435 HYGCIVDLLGRAGYLAEAEEVISSM--------PMEPN-AAVW----EALLGACRKHGEVEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 435 ~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 499 (654)
.|..+..++.+.|++++|+..+++. .+.|+ ...| .....++...|++++|+..|+++++++|++.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~ 136 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 136 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence 4555555555555555555555443 23675 6788 9999999999999999999999999999987
No 146
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.13 E-value=1.8e-05 Score=83.49 Aligned_cols=119 Identities=7% Similarity=-0.063 Sum_probs=93.2
Q ss_pred HHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCC
Q 006246 336 ALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGM 412 (654)
Q Consensus 336 ~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 412 (654)
.+...|.+.|++++|.+.|++..+ .+..+|..+..+|.+.|++++|++.+++..+.. +.+...+..+..++...|+
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 344567788999999999998764 367899999999999999999999999999863 2356788889999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCcchHHHHHHH--HHHcCCHHHHHHHHH
Q 006246 413 IDRGLQALTYMQQMYGIDPEVEHYGCIVDL--LGRAGYLAEAEEVIS 457 (654)
Q Consensus 413 ~~~a~~~~~~~~~~~g~~p~~~~~~~li~~--~~~~g~~~~A~~~~~ 457 (654)
+++|.+.|+++.+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 90 ~~eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999998752 2234456666655 888999999999998
No 147
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.13 E-value=2.8e-05 Score=65.31 Aligned_cols=96 Identities=9% Similarity=0.005 Sum_probs=52.5
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHH
Q 006246 361 EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIV 440 (654)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li 440 (654)
+...|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la 91 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQL--EPTFIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCchHHHHHHH
Confidence 34556666666666666666666666666542 224455555566666666666666666666552 112233444444
Q ss_pred HHHHHcCCHHHHHHHHHhC
Q 006246 441 DLLGRAGYLAEAEEVISSM 459 (654)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~m 459 (654)
.+|.+.|++++|.+.+++.
T Consensus 92 ~~~~~~~~~~~A~~~~~~~ 110 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKA 110 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHH
Confidence 4555555555555555443
No 148
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.13 E-value=5.1e-05 Score=61.99 Aligned_cols=99 Identities=15% Similarity=0.027 Sum_probs=56.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHH
Q 006246 399 TFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-PME-PNAAVWEALLGACR 476 (654)
Q Consensus 399 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~ 476 (654)
.+..+...+...|++++|...|+...+. .+.+...+..+...+.+.|++++|.+.+++. ... .+...|..+...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3444444455555555555555555442 1223444555555555566666666555554 112 24666667777777
Q ss_pred HhCChHHHHHHHHHHHhcCCCCC
Q 006246 477 KHGEVEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 477 ~~g~~~~a~~~~~~~~~~~p~~~ 499 (654)
..|++++|...++++++.+|++.
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~ 106 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNP 106 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCH
Confidence 77777777777777777777653
No 149
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.12 E-value=3.8e-05 Score=68.72 Aligned_cols=116 Identities=6% Similarity=-0.037 Sum_probs=72.8
Q ss_pred hcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHH-HHHcCCh--hHH
Q 006246 308 SLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGG-LAMHGRA--DDA 381 (654)
Q Consensus 308 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~-~~~~g~~--~~A 381 (654)
..|++++|...+....+.. +.+...+..+...|...|++++|...|++... .+...|..+... |...|++ ++|
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 4556666666666666554 33556666677777777777777777766553 355666666666 6667776 777
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006246 382 IELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQ 425 (654)
Q Consensus 382 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 425 (654)
+..|+++.+.. +.+...+..+...+...|++++|...|+.+.+
T Consensus 101 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 101 RAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 77777776653 22445666666677777777777777777765
No 150
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.10 E-value=2.1e-05 Score=63.81 Aligned_cols=100 Identities=15% Similarity=0.004 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-CCCC---CHHHHHHHHH
Q 006246 398 ITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-PMEP---NAAVWEALLG 473 (654)
Q Consensus 398 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~ 473 (654)
..+..+...+...|++++|...|++..+. .+.+...+..+...+.+.|++++|++.+++. ...| +..+|..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 45556666677777777777777777763 2234556777777888888888888888766 2223 5788888888
Q ss_pred HHHHh-CChHHHHHHHHHHHhcCCCCC
Q 006246 474 ACRKH-GEVEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 474 ~~~~~-g~~~~a~~~~~~~~~~~p~~~ 499 (654)
.+... |++++|.+.++++++..|.++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 99999 999999999999999888753
No 151
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.09 E-value=1.6e-05 Score=68.92 Aligned_cols=95 Identities=13% Similarity=-0.006 Sum_probs=56.2
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 006246 331 AVLGTALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSAC 407 (654)
Q Consensus 331 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 407 (654)
...+..+...+.+.|++++|...|++... .+...|..+..+|...|++++|+..|++..+.. +.+...+..+..++
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 34444555566666666666666665532 255566666666666666666666666666542 12344555566666
Q ss_pred HccCCHHHHHHHHHHHHHH
Q 006246 408 AHAGMIDRGLQALTYMQQM 426 (654)
Q Consensus 408 ~~~g~~~~a~~~~~~~~~~ 426 (654)
...|++++|...|+...+.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 6666666666666666553
No 152
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.08 E-value=9.1e-06 Score=74.46 Aligned_cols=121 Identities=7% Similarity=-0.033 Sum_probs=60.1
Q ss_pred HHHHHHHcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCC-CC--------------HH
Q 006246 337 LVDMYAKCGRLDMAWKVFEDMKMK---EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMR-PD--------------RI 398 (654)
Q Consensus 337 li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~--------------~~ 398 (654)
.+......|.+++|.+.|+.-... ....|..+...+...|++++|+..|++..+.... |+ ..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 344445567777777776644332 4456777888888899999999999888774211 11 13
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC
Q 006246 399 TFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459 (654)
Q Consensus 399 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (654)
.+..+..++...|++++|+..++...+. -+.+...+..+..+|...|++++|++.|++.
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 4444444555555555555555555442 1122334444444444444444444444443
No 153
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.08 E-value=3.6e-05 Score=64.50 Aligned_cols=96 Identities=13% Similarity=0.011 Sum_probs=67.9
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHHcCCCCCc----chHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-C---HHHHHHHH
Q 006246 402 CVLSACAHAGMIDRGLQALTYMQQMYGIDPEV----EHYGCIVDLLGRAGYLAEAEEVISSM-PMEP-N---AAVWEALL 472 (654)
Q Consensus 402 ~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~---~~~~~~ll 472 (654)
.+...+...|++++|...|+.+.+. .|+. ..+..+..++.+.|++++|...+++. ...| + ...+..+.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 3445566677777777777777663 2332 25666677777778888877777765 2223 2 56677888
Q ss_pred HHHHHhCChHHHHHHHHHHHhcCCCCCC
Q 006246 473 GACRKHGEVEFGERLGKILLEMEPQNRR 500 (654)
Q Consensus 473 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 500 (654)
..+...|++++|...++++++..|++..
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 111 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDA 111 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChH
Confidence 8889999999999999999999988753
No 154
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.07 E-value=2e-05 Score=65.99 Aligned_cols=95 Identities=11% Similarity=-0.071 Sum_probs=58.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 006246 399 TFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-PMEP-NAAVWEALLGACR 476 (654)
Q Consensus 399 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 476 (654)
.+..+...+.+.|++++|...|++..+. .+.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3444444555555555555555555542 1223445555666666666666666666554 2223 4667777777788
Q ss_pred HhCChHHHHHHHHHHHhcC
Q 006246 477 KHGEVEFGERLGKILLEME 495 (654)
Q Consensus 477 ~~g~~~~a~~~~~~~~~~~ 495 (654)
..|++++|...++++++++
T Consensus 84 ~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 84 AVKEYASALETLDAARTKD 102 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhC
Confidence 8888888888888888877
No 155
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.05 E-value=4.5e-05 Score=64.06 Aligned_cols=115 Identities=8% Similarity=-0.098 Sum_probs=80.1
Q ss_pred CchhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 006246 329 VDAVLGTALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLS 405 (654)
Q Consensus 329 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 405 (654)
.+...+..+...|.+.|++++|...|++... .+...|..+...|...|++++|+..|++..+.. +.+...+..+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 3455666677777777788888777777654 256677777778888888888888888877753 235667777777
Q ss_pred HHHccCCHHHHHHHHHHHHHHcCCCC-CcchHHHHHHHHHHcC
Q 006246 406 ACAHAGMIDRGLQALTYMQQMYGIDP-EVEHYGCIVDLLGRAG 447 (654)
Q Consensus 406 ~~~~~g~~~~a~~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g 447 (654)
.+...|++++|.+.|++..+. .| +...+..+..++.+.|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL---DSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHhc
Confidence 888888888888888887763 23 2345555555555544
No 156
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.05 E-value=6.6e-05 Score=62.63 Aligned_cols=93 Identities=8% Similarity=-0.052 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 006246 262 ITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMY 341 (654)
Q Consensus 262 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 341 (654)
..|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|...+..+.+.. +.+...+..+...|
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 345555556666666666666666655432 1233344444444445555555555555444432 12233344444444
Q ss_pred HHcCCHHHHHHHHhh
Q 006246 342 AKCGRLDMAWKVFED 356 (654)
Q Consensus 342 ~~~g~~~~A~~~~~~ 356 (654)
.+.|++++|...|++
T Consensus 91 ~~~~~~~~A~~~~~~ 105 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKK 105 (131)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHH
Confidence 444444444444443
No 157
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.04 E-value=5e-05 Score=64.41 Aligned_cols=101 Identities=3% Similarity=-0.228 Sum_probs=69.8
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 006246 396 DRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-PMEP-NAAVWEALLG 473 (654)
Q Consensus 396 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~ 473 (654)
+...+..+...+...|++++|...|+...+. .+.+...|..+..+|...|++++|+..+++. ...| +...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 4455666666666667777777777666653 1223556666677777777777777777665 2223 5778888888
Q ss_pred HHHHhCChHHHHHHHHHHHhcCCCC
Q 006246 474 ACRKHGEVEFGERLGKILLEMEPQN 498 (654)
Q Consensus 474 ~~~~~g~~~~a~~~~~~~~~~~p~~ 498 (654)
.+...|++++|+..+++++++.|++
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~~ 110 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKEQ 110 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHHChhH
Confidence 8888888888888888888887773
No 158
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.04 E-value=2.1e-05 Score=65.54 Aligned_cols=97 Identities=12% Similarity=-0.036 Sum_probs=71.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 006246 400 FACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-PMEP-NAAVWEALLGACRK 477 (654)
Q Consensus 400 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 477 (654)
+..+...+.+.|++++|...|+...+. -+.+...|..+..++.+.|++++|+..+++. ...| +...|..+...+..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 445556677788888888888888764 2235667777888888888888888888876 3334 57788889999999
Q ss_pred hCChHHHHHHHHHHHhcCCCC
Q 006246 478 HGEVEFGERLGKILLEMEPQN 498 (654)
Q Consensus 478 ~g~~~~a~~~~~~~~~~~p~~ 498 (654)
.|++++|+..++++++++|++
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHC-----
T ss_pred cCCHHHHHHHHHHHHHhCcCC
Confidence 999999999999999988875
No 159
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.03 E-value=0.00013 Score=62.50 Aligned_cols=99 Identities=14% Similarity=-0.000 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCC----cchHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 006246 398 ITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPE----VEHYGCIVDLLGRAGYLAEAEEVISSM-PMEP-NAAVWEAL 471 (654)
Q Consensus 398 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l 471 (654)
..+..+...+...|++++|...|++..+ ..|+ ...+..+...|...|++++|++.+++. ...| +...|..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 3444444445555555555555554443 2333 344555566666666666666666654 2223 56777788
Q ss_pred HHHHHHhCChHHHHHHHHHHHhcCCCCC
Q 006246 472 LGACRKHGEVEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 472 l~~~~~~g~~~~a~~~~~~~~~~~p~~~ 499 (654)
...+...|++++|...++++++++|++.
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~~ 133 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKNK 133 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 8888888888888888888888888763
No 160
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.02 E-value=2.4e-05 Score=68.22 Aligned_cols=97 Identities=8% Similarity=-0.030 Sum_probs=55.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCC----cchHHHHHHHHHHcCCHHHHHHHHHhC-------CCCC-CHH
Q 006246 399 TFACVLSACAHAGMIDRGLQALTYMQQMYGIDPE----VEHYGCIVDLLGRAGYLAEAEEVISSM-------PMEP-NAA 466 (654)
Q Consensus 399 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~ 466 (654)
++..+...+...|++++|...++...+...-.++ ...+..+...+...|++++|.+.+++. +..+ ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 3444444455555555555555544432111111 234455556666666666666666544 1111 145
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHhcC
Q 006246 467 VWEALLGACRKHGEVEFGERLGKILLEME 495 (654)
Q Consensus 467 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 495 (654)
++..+...+...|++++|...+++++++.
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 66778888888899999999888887754
No 161
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.01 E-value=6.4e-05 Score=63.12 Aligned_cols=106 Identities=9% Similarity=-0.031 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCC-cchHHHHHH
Q 006246 363 FTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPE-VEHYGCIVD 441 (654)
Q Consensus 363 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~-~~~~~~li~ 441 (654)
.+|..+...+.+.|++++|++.|++.++.. +-+...|..+..+|...|++++|++.+++..+. .|+ ...+..+
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~-- 82 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV---GRETRADYKLI-- 82 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHTTCCHHHH--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh---CcccchhhHHH--
Confidence 345556666666666666666666666542 223445666666666666666666666665542 111 1111111
Q ss_pred HHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Q 006246 442 LLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQ 497 (654)
Q Consensus 442 ~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 497 (654)
..+|..+...+...|++++|++.|+++++..|+
T Consensus 83 -----------------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 83 -----------------------AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp -----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred -----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 123445555666666666666666666666554
No 162
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.01 E-value=6.6e-05 Score=62.69 Aligned_cols=102 Identities=8% Similarity=-0.037 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 006246 364 TWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLL 443 (654)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~ 443 (654)
.|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++.+.+.. |+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~----------- 70 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG---RE----------- 70 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---HH-----------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc---cc-----------
Confidence 44455555555555555555555555432 2233444444444555555555555555444321 00
Q ss_pred HHcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Q 006246 444 GRAGYLAEAEEVISSMPMEPN----AAVWEALLGACRKHGEVEFGERLGKILLEMEPQ 497 (654)
Q Consensus 444 ~~~g~~~~A~~~~~~m~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 497 (654)
..++ ..+|..+...+...|++++|...++++++..|+
T Consensus 71 -----------------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 111 (131)
T 1elr_A 71 -----------------NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111 (131)
T ss_dssp -----------------STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred -----------------cchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 0112 455666666777777777777777777777664
No 163
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.00 E-value=5.2e-05 Score=63.67 Aligned_cols=62 Identities=6% Similarity=0.037 Sum_probs=29.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Q 006246 437 GCIVDLLGRAGYLAEAEEVISSM-PMEP-NAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN 498 (654)
Q Consensus 437 ~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 498 (654)
..+...+.+.|++++|++.|++. ...| +...|..+..+|...|++++|+..++++++++|++
T Consensus 12 ~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~ 75 (127)
T 4gcn_A 12 KDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET 75 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc
Confidence 33444444455555555444443 1122 34445555555555555555555555555554443
No 164
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.99 E-value=0.0016 Score=64.41 Aligned_cols=129 Identities=11% Similarity=-0.028 Sum_probs=53.4
Q ss_pred HHHHHHHHHhcCCC---CcchHHHHHHHHHhc-C-CHHHHHHHHHhcCCC---CHhHHHHHHHHHHhcCChH--------
Q 006246 215 IEGAKELFKSTKDK---NTGSYNAMISGFARF-G-RFEEARKLFNEMNDK---DEITWSAIIDGYTKDGYYK-------- 278 (654)
Q Consensus 215 ~~~A~~~~~~m~~~---~~~~~~~li~~~~~~-g-~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~-------- 278 (654)
+++++.+++.+... +..+|+.-...+.+. + ++++++++++.+.+. |..+|+--.-.+.+.|.++
T Consensus 105 l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~ 184 (349)
T 3q7a_A 105 LEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWG 184 (349)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHH
Confidence 44444444444332 222333333333333 3 444455555554432 3334444333333333333
Q ss_pred HHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCC-------hhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcC
Q 006246 279 EALEVFNEMQRDKIKPRKFVLSCVLAACASLGA-------LDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCG 345 (654)
Q Consensus 279 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 345 (654)
++++.++++.+.. +-|...|+.....+.+.+. ++++.+....++... +.|...|+-+-..+.+.|
T Consensus 185 eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 185 SELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 5555555555543 2233344444444444433 344444444444433 234444444444444333
No 165
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.99 E-value=6e-05 Score=75.47 Aligned_cols=143 Identities=10% Similarity=-0.069 Sum_probs=81.7
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 006246 261 EITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDM 340 (654)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 340 (654)
...|..+...|.+.|++++|+..|++..... |+...+ ..+.+.++- +....++..+..+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~~~--------~~~~~~~~nla~~ 205 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQKAQ--------ALRLASHLNLAMC 205 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHHHH--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHHHH--------HHHHHHHHHHHHH
Confidence 4456677777777888888888887777643 222100 001111100 0013355556666
Q ss_pred HHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHH-
Q 006246 341 YAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRG- 416 (654)
Q Consensus 341 y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a- 416 (654)
|.+.|++++|...|++... .+...|..+..+|...|++++|+..|++.++.. +.+...+..+..++...|+.+++
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666665543 355666666667777777777777777766642 22445566666666666666666
Q ss_pred HHHHHHHHH
Q 006246 417 LQALTYMQQ 425 (654)
Q Consensus 417 ~~~~~~~~~ 425 (654)
...+..|..
T Consensus 285 ~~~~~~~~~ 293 (336)
T 1p5q_A 285 KKLYANMFE 293 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 345555544
No 166
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.97 E-value=0.00022 Score=74.03 Aligned_cols=208 Identities=10% Similarity=-0.061 Sum_probs=110.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCH
Q 006246 268 IDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRL 347 (654)
Q Consensus 268 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 347 (654)
...+.+.|++++|++.|.++.+.......... ..+......... ...+..|+..|.+.|++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~--------~~~~~~~~~~~~-----------~~al~~l~~~y~~~~~~ 71 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAA--------GASVDDKRRNEQ-----------ETSILELGQLYVTMGAK 71 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSS--------SSSBCSHHHHHH-----------HHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHH--------HHHHHHHHhhhH-----------HHHHHHHHHHHHHCCCH
Confidence 45567788888888888888775422211100 000000000000 01233455566666666
Q ss_pred HHHHHHHhhcCCC-----CH----HHHHHHHHHHHHcCChhHHHHHHHHHhh----cCCCCC-HHHHHHHHHHHHccCCH
Q 006246 348 DMAWKVFEDMKMK-----EV----FTWNAMIGGLAMHGRADDAIELFFKMQR----EKMRPD-RITFACVLSACAHAGMI 413 (654)
Q Consensus 348 ~~A~~~~~~m~~~-----~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~-~~t~~~ll~~~~~~g~~ 413 (654)
++|.+.+..+... +. ...+.+...+...|+.++|++++++... .+..+. ..++..+...+...|++
T Consensus 72 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 151 (434)
T 4b4t_Q 72 DKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQY 151 (434)
T ss_dssp HHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccCh
Confidence 6666665554320 11 1223333333345666666666665543 222222 23555666667777777
Q ss_pred HHHHHHHHHHHHHcCCCCC----cchHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHHhCC
Q 006246 414 DRGLQALTYMQQMYGIDPE----VEHYGCIVDLLGRAGYLAEAEEVISSM-------PMEPN--AAVWEALLGACRKHGE 480 (654)
Q Consensus 414 ~~a~~~~~~~~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~--~~~~~~ll~~~~~~g~ 480 (654)
++|..+++.+.....-..+ ...|..++.+|...|++++|..++++. +.+|. ...+..++..+...|+
T Consensus 152 ~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 231 (434)
T 4b4t_Q 152 KDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKD 231 (434)
T ss_dssp HHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSC
T ss_pred HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHh
Confidence 7777777666553222111 335666677777777777777776654 11111 3445555666667777
Q ss_pred hHHHHHHHHHHHhc
Q 006246 481 VEFGERLGKILLEM 494 (654)
Q Consensus 481 ~~~a~~~~~~~~~~ 494 (654)
++.|...+.++++.
T Consensus 232 y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 232 YKTAFSYFFESFES 245 (434)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777777663
No 167
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.94 E-value=0.00019 Score=74.52 Aligned_cols=53 Identities=17% Similarity=0.199 Sum_probs=41.2
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCC--------------------HhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006246 237 ISGFARFGRFEEARKLFNEMNDKD--------------------EITWSAIIDGYTKDGYYKEALEVFNEMQR 289 (654)
Q Consensus 237 i~~~~~~g~~~~A~~~~~~~~~~~--------------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 289 (654)
...+.+.|++++|.+.|..+.+.+ ..++..+...|...|++++|.+++.++..
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 456788999999999999876421 11467788888899999999988887765
No 168
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.93 E-value=0.00011 Score=61.41 Aligned_cols=93 Identities=11% Similarity=-0.049 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 006246 364 TWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLL 443 (654)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~ 443 (654)
.|..+...+.+.|++++|+..|++.++.. +.+...|..+..++.+.|++++|+..+++..+. -+.+...|..+..+|
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHH
Confidence 45555556666666666666666665542 224455666666666666666666666666653 122344556666666
Q ss_pred HHcCCHHHHHHHHHhC
Q 006246 444 GRAGYLAEAEEVISSM 459 (654)
Q Consensus 444 ~~~g~~~~A~~~~~~m 459 (654)
...|++++|.+.|++.
T Consensus 83 ~~~~~~~~A~~~~~~a 98 (126)
T 3upv_A 83 IAVKEYASALETLDAA 98 (126)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHH
Confidence 6666666666666654
No 169
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.92 E-value=0.00048 Score=67.74 Aligned_cols=190 Identities=14% Similarity=0.065 Sum_probs=141.4
Q ss_pred hcCCh-hHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCC----------HHHHHHHHhhcCC---CCHHHHHHHHHHHH
Q 006246 308 SLGAL-DQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGR----------LDMAWKVFEDMKM---KEVFTWNAMIGGLA 373 (654)
Q Consensus 308 ~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~----------~~~A~~~~~~m~~---~~~~~~~~li~~~~ 373 (654)
+.|.+ ++|.+....++..+ +.+..+|+.--..+...|. +++++.+++.+.. ++..+|+.-...+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 44444 47888888888766 3355566554444433333 6788888887764 57889999888888
Q ss_pred HcCC--hhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCC-HHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHc----
Q 006246 374 MHGR--ADDAIELFFKMQREKMRPDRITFACVLSACAHAGM-IDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRA---- 446 (654)
Q Consensus 374 ~~g~--~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~-~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~---- 446 (654)
..|+ ++++++++.++.+...+ |...|+.-...+...|. ++++++.+..+.+. -+-|...|+....++.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSCCC
T ss_pred ccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhhcc
Confidence 8884 89999999999997644 77788877777788888 69999999999984 244566777777666665
Q ss_pred ----------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHh-----------CChHHHHHHHHHHHhcCCCCCCch
Q 006246 447 ----------GYLAEAEEVISSM-PMEP-NAAVWEALLGACRKH-----------GEVEFGERLGKILLEMEPQNRRCD 502 (654)
Q Consensus 447 ----------g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~ 502 (654)
+.++++++.+++. ...| |...|+-+-..+.+. +.++++++.++++++++|++ +|.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~w~ 274 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-KWC 274 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-chH
Confidence 5688999999877 2334 788998666666555 45889999999999999998 564
No 170
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.92 E-value=0.00022 Score=58.12 Aligned_cols=107 Identities=15% Similarity=0.090 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHH
Q 006246 362 VFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVD 441 (654)
Q Consensus 362 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~ 441 (654)
...|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+++..+. .+.+...+..+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~ 80 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--CcccHHHHHHHHH
Confidence 3455666666777777777777777776642 224556666666777777777777777777663 1223556667777
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 006246 442 LLGRAGYLAEAEEVISSM-PMEP-NAAVWEAL 471 (654)
Q Consensus 442 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l 471 (654)
++...|++++|.+.+++. ...| +...+..+
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 112 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHEANNPQLKEGL 112 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 777777777777777765 3334 34444433
No 171
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.92 E-value=0.00014 Score=64.14 Aligned_cols=92 Identities=7% Similarity=-0.122 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHc
Q 006246 333 LGTALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAH 409 (654)
Q Consensus 333 ~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 409 (654)
.+..+...|.+.|++++|.+.|++... .+...|..+...|.+.|++++|+..|++.++.. +-+...|..+..++..
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 91 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLARFD 91 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 334444444444555555444444332 234444444445555555555555555544432 1123344444444445
Q ss_pred cCCHHHHHHHHHHHHH
Q 006246 410 AGMIDRGLQALTYMQQ 425 (654)
Q Consensus 410 ~g~~~~a~~~~~~~~~ 425 (654)
.|++++|...|++..+
T Consensus 92 ~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 92 MADYKGAKEAYEKGIE 107 (164)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 5555555555544444
No 172
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.91 E-value=1.9e-05 Score=72.30 Aligned_cols=158 Identities=9% Similarity=-0.019 Sum_probs=79.3
Q ss_pred HHHhcCCHHHHHHHHHhcCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHH
Q 006246 239 GFARFGRFEEARKLFNEMNDK---DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQG 315 (654)
Q Consensus 239 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 315 (654)
.....|+++.|.+.|+.-.+. ....+..+...+...|++++|+..|++..... |+...+.... ...-
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~--------~~~~ 82 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQI--------LLDK 82 (198)
T ss_dssp ---------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCHH--------HHHH
T ss_pred hhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchhh--------HHHH
Confidence 334445555555555433221 34467777788888888888888888887642 2111000000 0000
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcC
Q 006246 316 IWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREK 392 (654)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 392 (654)
. . .....++..+..+|.+.|++++|...|++... .+...|..+..+|...|++++|++.|++..+..
T Consensus 83 ~---~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 83 K---K-------NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp H---H-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred H---H-------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 0 0 00123445556666666666666666665543 345566666666666677777777666666542
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHH
Q 006246 393 MRPDRITFACVLSACAHAGMIDRGL 417 (654)
Q Consensus 393 ~~p~~~t~~~ll~~~~~~g~~~~a~ 417 (654)
+-+...+..+..++...++.+++.
T Consensus 153 -p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 153 -PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred -CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 123445555555555555555544
No 173
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.89 E-value=2.7e-05 Score=78.08 Aligned_cols=99 Identities=7% Similarity=0.006 Sum_probs=47.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH-H
Q 006246 399 TFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-PMEPN-AAVWEALLGA-C 475 (654)
Q Consensus 399 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~-~ 475 (654)
.|..+..++.+.|++++|+..+++..+. -+.+...|..+..+|...|++++|++.|++. ...|+ ...+..|... .
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~ 309 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAE 309 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 6777778888888888888888888773 2234667888888888888888888888887 44453 4555555544 3
Q ss_pred HHhCChHHHHHHHHHHHhcCCCCC
Q 006246 476 RKHGEVEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 476 ~~~g~~~~a~~~~~~~~~~~p~~~ 499 (654)
...+..+.+...|+++++..|+++
T Consensus 310 ~~~~~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 310 QEKALYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHhhCCCCCCC
Confidence 445667778888888888888763
No 174
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.89 E-value=9.4e-05 Score=61.71 Aligned_cols=108 Identities=13% Similarity=0.010 Sum_probs=84.9
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCC--CCC----HHHHH
Q 006246 331 AVLGTALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKM--RPD----RITFA 401 (654)
Q Consensus 331 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~----~~t~~ 401 (654)
...+..+...|...|++++|...|++... .+...|..+...|...|++++|+..|++..+... .++ ..++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 45677889999999999999999998764 4678899999999999999999999999987532 122 56777
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHH
Q 006246 402 CVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVD 441 (654)
Q Consensus 402 ~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~ 441 (654)
.+...+...|++++|.+.|+.+.+. .|+......+..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~l~~ 120 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE---HRTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CCCHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh---CCCHHHHHHHHH
Confidence 7888888888888888888888774 355444444433
No 175
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.87 E-value=0.00018 Score=61.60 Aligned_cols=94 Identities=20% Similarity=0.069 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHH
Q 006246 363 FTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDL 442 (654)
Q Consensus 363 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~ 442 (654)
..+..+...+.+.|++++|+..|++..... +.+...|..+..++...|++++|...|+...+. -+.+...+..+..+
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALM--DINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHHHHH
Confidence 344455555666666666666666665542 224445555666666666666666666666653 12234455566666
Q ss_pred HHHcCCHHHHHHHHHhC
Q 006246 443 LGRAGYLAEAEEVISSM 459 (654)
Q Consensus 443 ~~~~g~~~~A~~~~~~m 459 (654)
|...|++++|.+.|++.
T Consensus 96 ~~~~g~~~~A~~~~~~a 112 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSA 112 (142)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 66666666666666654
No 176
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.83 E-value=0.00034 Score=59.10 Aligned_cols=96 Identities=6% Similarity=-0.084 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHH
Q 006246 361 EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIV 440 (654)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li 440 (654)
+...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++...+. .+.+...+..+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CchhHHHHHHHH
Confidence 34455555555555556666666555555542 223445555555555566666666666555542 122344555555
Q ss_pred HHHHHcCCHHHHHHHHHhC
Q 006246 441 DLLGRAGYLAEAEEVISSM 459 (654)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~m 459 (654)
.+|...|++++|++.|++.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHH
Confidence 5666666666666555544
No 177
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.76 E-value=0.00036 Score=59.65 Aligned_cols=95 Identities=11% Similarity=-0.029 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchH
Q 006246 361 EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPD----RITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHY 436 (654)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~ 436 (654)
+...|..+...+...|++++|+..|++..+. .|+ ...+..+...+...|++++|...++...+. .+.+...+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~ 102 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKAL 102 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHHH
Confidence 4556666666666777777777777776654 344 455666666666777777777777766653 12234556
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC
Q 006246 437 GCIVDLLGRAGYLAEAEEVISSM 459 (654)
Q Consensus 437 ~~li~~~~~~g~~~~A~~~~~~m 459 (654)
..+..+|...|++++|.+.+++.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~a 125 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRC 125 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666777777777777777665
No 178
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.74 E-value=0.00012 Score=64.30 Aligned_cols=113 Identities=19% Similarity=0.132 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHhhcC------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcch
Q 006246 362 VFTWNAMIGGLAMHGRADDAIELFFKMQREK------MRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEH 435 (654)
Q Consensus 362 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~ 435 (654)
...|......+.+.|++++|+..|.+.+..- -.|+...+ ..+. +.+...
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~--------------------~~~~-----~~~~~~ 65 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW--------------------VELD-----RKNIPL 65 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH--------------------HHHH-----HTHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH--------------------HHHH-----HHHHHH
Confidence 3456666777777777777777777766530 00110000 0000 112356
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCC
Q 006246 436 YGCIVDLLGRAGYLAEAEEVISSM-PMEP-NAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 436 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 499 (654)
|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|...++++++++|++.
T Consensus 66 ~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 66 YANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 777888888888888888888876 3334 688899999999999999999999999999999975
No 179
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.73 E-value=0.0003 Score=56.66 Aligned_cols=88 Identities=14% Similarity=0.041 Sum_probs=38.5
Q ss_pred HHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCC--CHHHHHHHHHHHHcc-
Q 006246 337 LVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRP--DRITFACVLSACAHA- 410 (654)
Q Consensus 337 li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~~~~~~- 410 (654)
+...|.+.|++++|...|++... .+...|..+...+...|++++|++.|++..+.. +. +...+..+...+...
T Consensus 12 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~~~~~ 90 (112)
T 2kck_A 12 EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADALRYIE 90 (112)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHHTTCS
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHHHHHh
Confidence 33334444444444444433321 233344444444444555555555555444431 11 233444444445555
Q ss_pred CCHHHHHHHHHHHHH
Q 006246 411 GMIDRGLQALTYMQQ 425 (654)
Q Consensus 411 g~~~~a~~~~~~~~~ 425 (654)
|++++|.+.++....
T Consensus 91 ~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 91 GKEVEAEIAEARAKL 105 (112)
T ss_dssp SCSHHHHHHHHHHGG
T ss_pred CCHHHHHHHHHHHhh
Confidence 555555555554443
No 180
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.72 E-value=0.00017 Score=62.60 Aligned_cols=62 Identities=13% Similarity=0.054 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhc----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006246 364 TWNAMIGGLAMHGRADDAIELFFKMQRE----KMRP-DRITFACVLSACAHAGMIDRGLQALTYMQQ 425 (654)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 425 (654)
.+..+...+...|++++|.+.+++..+. +..+ ...++..+...+...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4444555555555665555555554432 1111 123455566666666777777777666654
No 181
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.65 E-value=0.00027 Score=73.95 Aligned_cols=121 Identities=8% Similarity=-0.094 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCC--------------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHcC
Q 006246 363 FTWNAMIGGLAMHGRADDAIELFFKMQREKMRPD--------------RITFACVLSACAHAGMIDRGLQALTYMQQMYG 428 (654)
Q Consensus 363 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--------------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g 428 (654)
..|..+...|.+.|++++|+..|++.++...... ...|..+..++.+.|++++|+..++++.+.
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-- 346 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL-- 346 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--
Confidence 3455555555566666666666665555311100 345555666666666666666666666653
Q ss_pred CCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChHHHH
Q 006246 429 IDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-PMEP-NAAVWEALLGACRKHGEVEFGE 485 (654)
Q Consensus 429 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 485 (654)
-+.+...|..+..+|...|++++|+..|++. ...| +..+|..+...+...|+.+++.
T Consensus 347 ~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 347 DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 1223445566666666666666666666655 3333 3455566666666666655554
No 182
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.64 E-value=0.00026 Score=58.70 Aligned_cols=87 Identities=15% Similarity=0.014 Sum_probs=38.9
Q ss_pred HHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCH
Q 006246 337 LVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMI 413 (654)
Q Consensus 337 li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 413 (654)
+...+.+.|++++|...|++... .+...|..+...+...|++++|+..|++..+.. +-+...+..+..++...|++
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g~~ 101 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNA 101 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 33444444555555554444432 134444444444444455555555444444432 11233444444444444444
Q ss_pred HHHHHHHHHHH
Q 006246 414 DRGLQALTYMQ 424 (654)
Q Consensus 414 ~~a~~~~~~~~ 424 (654)
++|...+++..
T Consensus 102 ~~A~~~~~~al 112 (121)
T 1hxi_A 102 NAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 183
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.64 E-value=4e-05 Score=66.00 Aligned_cols=96 Identities=9% Similarity=0.064 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCC----------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHh-
Q 006246 412 MIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGY----------LAEAEEVISSM-PMEP-NAAVWEALLGACRKH- 478 (654)
Q Consensus 412 ~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~----------~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~- 478 (654)
.+++|++.++...+. -+.+...|..+..++...|+ +++|+..|++. .+.| +..+|..+..+|...
T Consensus 17 ~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 17 LFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 344444444444432 12233444444444444443 45777777665 3444 466777777777766
Q ss_pred ----------CChHHHHHHHHHHHhcCCCCCCchHHHHHHH
Q 006246 479 ----------GEVEFGERLGKILLEMEPQNRRCDDVAKMRK 509 (654)
Q Consensus 479 ----------g~~~~a~~~~~~~~~~~p~~~~~~~a~~~~~ 509 (654)
|++++|+..|+++++++|++..+..+.++..
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ 135 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA 135 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4899999999999999999975555544433
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.63 E-value=3.5e-05 Score=63.63 Aligned_cols=65 Identities=17% Similarity=0.109 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCC
Q 006246 435 HYGCIVDLLGRAGYLAEAEEVISSM-PMEP-NAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 435 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 499 (654)
.+..+..+|.+.|++++|++.+++. ...| +..++..+..++...|++++|+..++++++..|+++
T Consensus 29 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 95 (117)
T 3k9i_A 29 CYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDE 95 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 3444555555555555555555544 1122 456666667777777777777777777777777664
No 185
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.62 E-value=0.00032 Score=73.80 Aligned_cols=117 Identities=9% Similarity=-0.037 Sum_probs=92.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChh
Q 006246 303 LAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRAD 379 (654)
Q Consensus 303 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~ 379 (654)
...+.+.|++++|.+.++++.+.. +.+..++..+..+|.+.|++++|.+.|++..+ .+..+|..+..+|...|+++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 345678899999999999999875 44688899999999999999999999998765 36789999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHH--HHccCCHHHHHHHHH
Q 006246 380 DAIELFFKMQREKMRPDRITFACVLSA--CAHAGMIDRGLQALT 421 (654)
Q Consensus 380 ~A~~l~~~m~~~g~~p~~~t~~~ll~~--~~~~g~~~~a~~~~~ 421 (654)
+|++.|++..+.... +...+..+..+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999886321 33344445444 778899999998887
No 186
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.56 E-value=0.0007 Score=70.80 Aligned_cols=125 Identities=12% Similarity=0.010 Sum_probs=97.6
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CC---------------HHHHHHHHHHHHHcCChhHHHHHHHHHhhcC
Q 006246 331 AVLGTALVDMYAKCGRLDMAWKVFEDMKM---KE---------------VFTWNAMIGGLAMHGRADDAIELFFKMQREK 392 (654)
Q Consensus 331 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~---------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 392 (654)
...+..+...|.+.|++++|...|++... .+ ...|..+..+|.+.|++++|+..|++.++..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34556667777777777777777776653 12 5788999999999999999999999998864
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCC-CcchHHHHHHHHHHcCCHHHHHH-HHHhC
Q 006246 393 MRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDP-EVEHYGCIVDLLGRAGYLAEAEE-VISSM 459 (654)
Q Consensus 393 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~-~~~~m 459 (654)
+.+...|..+..++...|++++|+..|+++.+ +.| +...+..+..++.+.|+.++|.. ++.+|
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~---l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE---VNPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33677888999999999999999999999976 344 46788889999999999988874 45555
No 187
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.52 E-value=0.0012 Score=54.82 Aligned_cols=86 Identities=13% Similarity=0.046 Sum_probs=42.4
Q ss_pred HHHHHHcCChhHHHHHHHHHhhcCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCC----cchHHHHH
Q 006246 369 IGGLAMHGRADDAIELFFKMQREKMRPDR----ITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPE----VEHYGCIV 440 (654)
Q Consensus 369 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~----~~~~~~li 440 (654)
...+...|++++|+..|++..+.. |+. ..+..+..++...|++++|...|+.+.+. .|+ ...+..+.
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~la 83 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR---YPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTSTTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH---CCCCcccHHHHHHHH
Confidence 344445555555555555555432 211 24444445555555555555555555543 122 23344455
Q ss_pred HHHHHcCCHHHHHHHHHhC
Q 006246 441 DLLGRAGYLAEAEEVISSM 459 (654)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~m 459 (654)
.+|.+.|++++|.+.|+++
T Consensus 84 ~~~~~~g~~~~A~~~~~~~ 102 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQV 102 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 5555555555555555544
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.48 E-value=0.00078 Score=68.16 Aligned_cols=116 Identities=9% Similarity=0.034 Sum_probs=63.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhcCC-------------------CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCC
Q 006246 334 GTALVDMYAKCGRLDMAWKVFEDMKM-------------------KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMR 394 (654)
Q Consensus 334 ~~~li~~y~~~g~~~~A~~~~~~m~~-------------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 394 (654)
+..+...|.+.|++++|.+.|++... .+...|..+..+|.+.|++++|++.+++.++.. +
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 304 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-P 304 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-T
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-c
Confidence 34455555566666666655554432 133456666666666666666666666666542 1
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCC-CcchHHHHHHHHHHcCCHHHHH
Q 006246 395 PDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDP-EVEHYGCIVDLLGRAGYLAEAE 453 (654)
Q Consensus 395 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~ 453 (654)
.+...+..+..++...|++++|...|+++.+. .| +...+..+..++.+.++.+++.
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l---~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEI---APEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 23445556666666666666666666666552 23 3334444445555555554443
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.48 E-value=0.00013 Score=60.09 Aligned_cols=83 Identities=11% Similarity=0.023 Sum_probs=37.7
Q ss_pred cCChhHHHHHHHHHhhcCC-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHH
Q 006246 375 HGRADDAIELFFKMQREKM-RP-DRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEA 452 (654)
Q Consensus 375 ~g~~~~A~~l~~~m~~~g~-~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A 452 (654)
.|++++|+..|++.++.+. .| +...+..+...+...|++++|...|++..+. .+-+...+..+..+|.+.|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHHH
Confidence 3445555555555554321 01 2234444555555555555555555555542 112234444555555555555555
Q ss_pred HHHHHhC
Q 006246 453 EEVISSM 459 (654)
Q Consensus 453 ~~~~~~m 459 (654)
++.+++.
T Consensus 81 ~~~~~~a 87 (117)
T 3k9i_A 81 VELLLKI 87 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 190
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.46 E-value=0.0038 Score=66.91 Aligned_cols=151 Identities=10% Similarity=-0.013 Sum_probs=120.4
Q ss_pred CHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCC----------hhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccC-
Q 006246 346 RLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGR----------ADDAIELFFKMQREKMRPDRITFACVLSACAHAG- 411 (654)
Q Consensus 346 ~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g- 411 (654)
.-++|.+.++++.. .+..+|+.--..+...|+ ++++++.++++.+...+ +...|..-...+.+.|
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 34567888877764 356778887777777777 89999999999987533 6778888888888888
Q ss_pred -CHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHh---------
Q 006246 412 -MIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAG-YLAEAEEVISSM-PMEP-NAAVWEALLGACRKH--------- 478 (654)
Q Consensus 412 -~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~--------- 478 (654)
+++++++.++++.+. -+-+...|+.-..++.+.| .++++++.++++ ...| |...|+.....+...
T Consensus 123 ~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 779999999999884 2335666777777888888 899999999988 4444 789999888887774
Q ss_pred -----CChHHHHHHHHHHHhcCCCCC
Q 006246 479 -----GEVEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 479 -----g~~~~a~~~~~~~~~~~p~~~ 499 (654)
+.++++.+.++++++++|++.
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~ 226 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQ 226 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCS
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCc
Confidence 567999999999999999986
No 191
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.44 E-value=0.00073 Score=70.75 Aligned_cols=124 Identities=9% Similarity=-0.052 Sum_probs=81.5
Q ss_pred HHHHHcCChhHHHHHHHHHhhc---CCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHHc--CCCCC----cchH
Q 006246 370 GGLAMHGRADDAIELFFKMQRE---KMRPDR----ITFACVLSACAHAGMIDRGLQALTYMQQMY--GIDPE----VEHY 436 (654)
Q Consensus 370 ~~~~~~g~~~~A~~l~~~m~~~---g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~--g~~p~----~~~~ 436 (654)
..+..+|++++|+.++++.++. -+-|+. .+++.|..+|...|++++|..++++..+.+ -+.|+ ..++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3456678888888888877652 233443 367777888888888888888888776532 11222 3457
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHh
Q 006246 437 GCIVDLLGRAGYLAEAEEVISSM---------PMEPN-AAVWEALLGACRKHGEVEFGERLGKILLE 493 (654)
Q Consensus 437 ~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 493 (654)
+.|..+|..+|++++|+.++++. +..|+ ..+.+.+..++...+.++.|+..|+++.+
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888888887765 22333 23344455566677777777777776644
No 192
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.39 E-value=0.00075 Score=59.09 Aligned_cols=94 Identities=11% Similarity=0.003 Sum_probs=57.1
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHhhcCCC---------------------CHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q 006246 331 AVLGTALVDMYAKCGRLDMAWKVFEDMKMK---------------------EVFTWNAMIGGLAMHGRADDAIELFFKMQ 389 (654)
Q Consensus 331 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---------------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 389 (654)
...+......+.+.|++++|...|++.... +...|..+..+|.+.|++++|+..+++.+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456778889999999999999999876531 12345555555555555555555555555
Q ss_pred hcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006246 390 REKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQ 425 (654)
Q Consensus 390 ~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 425 (654)
+.. +.+...|..+..++...|++++|...|+...+
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 542 12334455555555555555555555555544
No 193
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.35 E-value=0.0012 Score=66.79 Aligned_cols=91 Identities=13% Similarity=-0.043 Sum_probs=61.6
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHH
Q 006246 260 DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVD 339 (654)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 339 (654)
+...|..+..+|.+.|++++|++.+++.++.. +.+...+..+..++...|++++|...++.+.+.. +.+..++..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45567778888888888888888888887653 2244566666677777777777777777777654 234556666666
Q ss_pred HHHHcCCHHHHHH
Q 006246 340 MYAKCGRLDMAWK 352 (654)
Q Consensus 340 ~y~~~g~~~~A~~ 352 (654)
.+.+.++.+++.+
T Consensus 350 ~~~~~~~~~~a~k 362 (370)
T 1ihg_A 350 VKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666655543
No 194
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.35 E-value=0.0012 Score=68.97 Aligned_cols=121 Identities=12% Similarity=0.004 Sum_probs=76.1
Q ss_pred HHHHHcCCHHHHHHHHhhcCC-------C----CHHHHHHHHHHHHHcCChhHHHHHHHHHhhc-----C-CCCCH-HHH
Q 006246 339 DMYAKCGRLDMAWKVFEDMKM-------K----EVFTWNAMIGGLAMHGRADDAIELFFKMQRE-----K-MRPDR-ITF 400 (654)
Q Consensus 339 ~~y~~~g~~~~A~~~~~~m~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g-~~p~~-~t~ 400 (654)
..+...|++++|+.++++... + -..+++.|...|...|++++|+.++++.++- | -.|+. .++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 345567777777777765542 1 1246777777788888888888887776541 2 12222 367
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHc--CCCCC----cchHHHHHHHHHHcCCHHHHHHHHHhC
Q 006246 401 ACVLSACAHAGMIDRGLQALTYMQQMY--GIDPE----VEHYGCIVDLLGRAGYLAEAEEVISSM 459 (654)
Q Consensus 401 ~~ll~~~~~~g~~~~a~~~~~~~~~~~--g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (654)
+.|...|...|++++|..++++..+.. -+-|+ ..+.+.+..++...|.+++|+.++.++
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~ 461 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKM 461 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777778888888887777765432 12233 223445556666677777777777665
No 195
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.34 E-value=0.00078 Score=54.97 Aligned_cols=67 Identities=9% Similarity=0.035 Sum_probs=44.9
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCC
Q 006246 433 VEHYGCIVDLLGRAGYLAEAEEVISSM-PMEP-NAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 433 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 499 (654)
...+..+...|.+.|++++|++.+++. ...| +...|..+...+...|++++|...+++++++.|++.
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 87 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRG 87 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 445556666666666666666666654 2223 466777777778888888888888888887776544
No 196
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.33 E-value=0.0012 Score=56.87 Aligned_cols=62 Identities=13% Similarity=0.037 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhc-----CCCCCH-HHH----HHHHHHHHccCCHHHHHHHHHHHHH
Q 006246 364 TWNAMIGGLAMHGRADDAIELFFKMQRE-----KMRPDR-ITF----ACVLSACAHAGMIDRGLQALTYMQQ 425 (654)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~~p~~-~t~----~~ll~~~~~~g~~~~a~~~~~~~~~ 425 (654)
.|+.+..++.+.|++++|+..+++.++. .+.|+. ..| .....++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5666666666666666666666655542 113433 244 4555555555555555555555544
No 197
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.27 E-value=0.00038 Score=55.35 Aligned_cols=83 Identities=6% Similarity=0.002 Sum_probs=61.0
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCCchHHHHHHH
Q 006246 432 EVEHYGCIVDLLGRAGYLAEAEEVISSM-PMEP-NAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRK 509 (654)
Q Consensus 432 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~a~~~~~ 509 (654)
+...+..+..+|.+.|++++|++.|++. ...| +...|..+..+|...|++++|+..+++++++.|++.....+.++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~~ 85 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQD 85 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHHH
Confidence 3456677777788888888888888776 2233 4677888888888888888898888888888777665555666655
Q ss_pred HHHhc
Q 006246 510 LMKER 514 (654)
Q Consensus 510 ~m~~~ 514 (654)
.+.+.
T Consensus 86 ~l~~~ 90 (100)
T 3ma5_A 86 AKLKA 90 (100)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 55544
No 198
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.25 E-value=0.0012 Score=56.11 Aligned_cols=111 Identities=9% Similarity=-0.112 Sum_probs=88.9
Q ss_pred CChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHH----cCCHHH
Q 006246 376 GRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGR----AGYLAE 451 (654)
Q Consensus 376 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~----~g~~~~ 451 (654)
+++++|+++|++..+.| .|+.. |...|...+.+++|.++|++..+. -+...+..|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46788999999998887 34443 666667777888899999998873 456778888888888 889999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHH----hCChHHHHHHHHHHHhcC
Q 006246 452 AEEVISSMPMEPNAAVWEALLGACRK----HGEVEFGERLGKILLEME 495 (654)
Q Consensus 452 A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~ 495 (654)
|.+.|++.-..-++..+..|...|.. .++.++|...++++.+..
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 99999987333578888888888888 889999999999988864
No 199
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.24 E-value=0.00089 Score=66.88 Aligned_cols=142 Identities=13% Similarity=0.012 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 006246 263 TWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYA 342 (654)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 342 (654)
.|..+...+.+.|++++|+..|++.... .|+... +...++.+++...+ ....+..+..+|.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~~~~ 241 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH----------HHHHHHHHHHHHH
Confidence 3455556666666777777766666543 232211 11111222211111 0124455555666
Q ss_pred HcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHH-HHHHHHHH-HHccCCHHHHH
Q 006246 343 KCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRI-TFACVLSA-CAHAGMIDRGL 417 (654)
Q Consensus 343 ~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~-~~~~g~~~~a~ 417 (654)
+.|++++|...|++... .+...|..+..+|...|++++|+..|++..+. .|+.. .+..+... ....+..+++.
T Consensus 242 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666655542 24556666666666666666666666666553 33322 22222222 12234455555
Q ss_pred HHHHHHHH
Q 006246 418 QALTYMQQ 425 (654)
Q Consensus 418 ~~~~~~~~ 425 (654)
..|..|..
T Consensus 320 ~~~~~~l~ 327 (338)
T 2if4_A 320 EMYKGIFK 327 (338)
T ss_dssp --------
T ss_pred HHHHHhhC
Confidence 66665543
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.16 E-value=0.0051 Score=52.11 Aligned_cols=109 Identities=11% Similarity=-0.084 Sum_probs=61.5
Q ss_pred ChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHH----cCCHHHHH
Q 006246 276 YYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAK----CGRLDMAW 351 (654)
Q Consensus 276 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~ 351 (654)
++++|++.|++..+.| .|+.. +...+...+..++|.+.+....+.| ++..+..|..+|.. .++.++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4566777776666665 22222 4444455555666666666666654 44555556666655 55666666
Q ss_pred HHHhhcCC-CCHHHHHHHHHHHHH----cCChhHHHHHHHHHhhcC
Q 006246 352 KVFEDMKM-KEVFTWNAMIGGLAM----HGRADDAIELFFKMQREK 392 (654)
Q Consensus 352 ~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g 392 (654)
+.|++..+ .+..++..|...|.. .++.++|+++|++..+.|
T Consensus 82 ~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 66655543 245555555555555 555666666666655554
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.13 E-value=0.00041 Score=55.96 Aligned_cols=94 Identities=9% Similarity=0.021 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCC-------cc
Q 006246 362 VFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPE-------VE 434 (654)
Q Consensus 362 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~-------~~ 434 (654)
...|..+...+...|++++|++.|++..+.. +.+...+..+..++...|++++|+..+++..+ +.|+ ..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR---YTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCSSTTSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCccHHHHHHH
Confidence 3455566666666666666766666666542 22455566666666666666666666666654 2343 22
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHhC
Q 006246 435 HYGCIVDLLGRAGYLAEAEEVISSM 459 (654)
Q Consensus 435 ~~~~li~~~~~~g~~~~A~~~~~~m 459 (654)
.+..+..++...|++++|.+.++++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 3334444444444444444444433
No 202
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.06 E-value=0.0059 Score=62.81 Aligned_cols=87 Identities=10% Similarity=-0.015 Sum_probs=57.0
Q ss_pred HHccCCHHHHHHHHHHHHHHcC--CCCC----cchHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCC-HHHHHH
Q 006246 407 CAHAGMIDRGLQALTYMQQMYG--IDPE----VEHYGCIVDLLGRAGYLAEAEEVISSM---------PMEPN-AAVWEA 470 (654)
Q Consensus 407 ~~~~g~~~~a~~~~~~~~~~~g--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ 470 (654)
+.+.|++++|..++++..+... +.|+ ..+++.|..+|...|++++|+.++++. +..|+ ..+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 3445556666666555543211 1122 234666666777777777777766654 23343 567889
Q ss_pred HHHHHHHhCChHHHHHHHHHHHh
Q 006246 471 LLGACRKHGEVEFGERLGKILLE 493 (654)
Q Consensus 471 ll~~~~~~g~~~~a~~~~~~~~~ 493 (654)
|...|...|++++|+.+++++++
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999999999999998876
No 203
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.05 E-value=0.026 Score=63.52 Aligned_cols=154 Identities=15% Similarity=0.150 Sum_probs=104.5
Q ss_pred HHHHhcCCHHHHHH-HHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 006246 176 QMYACFGCVNKARQ-ILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFN 254 (654)
Q Consensus 176 ~~y~~~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 254 (654)
......+++++|.+ ++..++. ......++..+.+.|.+++|+++.+. . ..-.......|++++|.++.+
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~~--~~~~~~~~~~l~~~~~~~~a~~~~~~-----~---~~~f~~~l~~~~~~~A~~~~~ 676 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVEG--KDSLTKIARFLEGQEYYEEALNISPD-----Q---DQKFELALKVGQLTLARDLLT 676 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCCC--HHHHHHHHHHHHHTTCHHHHHHHCCC-----H---HHHHHHHHHHTCHHHHHHHHT
T ss_pred hHHHHhCCHHHHHHHHHhcCCc--hHHHHHHHHHHHhCCChHHheecCCC-----c---chheehhhhcCCHHHHHHHHH
Confidence 33456788888888 6644441 12237777778888999888877532 1 122445677899999999887
Q ss_pred hcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHH
Q 006246 255 EMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLG 334 (654)
Q Consensus 255 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 334 (654)
.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...++.+...++-+.+...|. +
T Consensus 677 ~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~ 739 (814)
T 3mkq_A 677 DES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------F 739 (814)
T ss_dssp TCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------H
T ss_pred hhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------h
Confidence 663 567899999999999999999999988753 44555556667777766666555555441 2
Q ss_pred HHHHHHHHHcCCHHHHHHHHhh
Q 006246 335 TALVDMYAKCGRLDMAWKVFED 356 (654)
Q Consensus 335 ~~li~~y~~~g~~~~A~~~~~~ 356 (654)
+.-..+|.++|++++|.+++.+
T Consensus 740 ~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 740 NLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 3344456667777777665443
No 204
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.04 E-value=0.0039 Score=64.06 Aligned_cols=90 Identities=11% Similarity=-0.029 Sum_probs=64.6
Q ss_pred cCCHHHHHHHHHHHHHHcC--CCCC----cchHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHH
Q 006246 410 AGMIDRGLQALTYMQQMYG--IDPE----VEHYGCIVDLLGRAGYLAEAEEVISSM---------PMEPN-AAVWEALLG 473 (654)
Q Consensus 410 ~g~~~~a~~~~~~~~~~~g--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~ 473 (654)
.|++++|..++++..+... +.|+ ..+++.|..+|...|++++|+.++++. +..|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 4667777777766655321 1222 345777778888888888888777765 23444 567899999
Q ss_pred HHHHhCChHHHHHHHHHHHh-----cCCCCC
Q 006246 474 ACRKHGEVEFGERLGKILLE-----MEPQNR 499 (654)
Q Consensus 474 ~~~~~g~~~~a~~~~~~~~~-----~~p~~~ 499 (654)
.|...|++++|+.+++++++ +.|+++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp 421 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHP 421 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 99999999999999999988 467764
No 205
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.03 E-value=0.00042 Score=55.87 Aligned_cols=63 Identities=16% Similarity=0.047 Sum_probs=28.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Q 006246 436 YGCIVDLLGRAGYLAEAEEVISSM-PME-PNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN 498 (654)
Q Consensus 436 ~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 498 (654)
+..+...+.+.|++++|++.+++. ... .+...|..+..++...|++++|+..++++++++|++
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 7 QKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 333444444444444444444433 111 134444444444555555555555555555555444
No 206
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.02 E-value=0.019 Score=61.43 Aligned_cols=196 Identities=7% Similarity=-0.021 Sum_probs=91.1
Q ss_pred hHHHHHHHHHHHhCCCCCCc-chHHHHHHHHHhcCC----------hhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcC
Q 006246 277 YKEALEVFNEMQRDKIKPRK-FVLSCVLAACASLGA----------LDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCG 345 (654)
Q Consensus 277 ~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 345 (654)
.++|++.++++... .|+. ..|+.--.++...++ ++++.+.++.+.+.. +-+..+|+.-.-.+.+.|
T Consensus 45 ~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 45 DESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp SHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 34556666666654 2332 223332333333333 455555555555443 223444444444444445
Q ss_pred --CHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcC-ChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 006246 346 --RLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHG-RADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQA 419 (654)
Q Consensus 346 --~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 419 (654)
+++++.+.++++.+ +|..+|+.-...+.+.| .++++++.+.++++..+. |...|+.....+.+.+..
T Consensus 122 ~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~------ 194 (567)
T 1dce_A 122 EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQ------ 194 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCC------
T ss_pred cccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccc------
Confidence 44555555555443 34455555555555555 455555555555544322 333444333332221000
Q ss_pred HHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChHH------------HH
Q 006246 420 LTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-PMEP-NAAVWEALLGACRKHGEVEF------------GE 485 (654)
Q Consensus 420 ~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~------------a~ 485 (654)
.-..+.. -...+.+++|++.+++. ...| |...|.-+...+.+.+..++ |.
T Consensus 195 --------~~~~~~~--------~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~ 258 (567)
T 1dce_A 195 --------PDSGPQG--------RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLS 258 (567)
T ss_dssp --------CCSSSCC--------SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEE
T ss_pred --------ccccccc--------cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEE
Confidence 0000000 00014466777776655 2233 57777777777776666544 34
Q ss_pred HHHHHHHhcCCCC
Q 006246 486 RLGKILLEMEPQN 498 (654)
Q Consensus 486 ~~~~~~~~~~p~~ 498 (654)
..|.++++++|..
T Consensus 259 ~~f~~~i~~~~~~ 271 (567)
T 1dce_A 259 VCFSRPLTVGSRM 271 (567)
T ss_dssp EEEEEEECTTBTT
T ss_pred EEeccceeccccc
Confidence 4456666666663
No 207
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.88 E-value=0.0032 Score=51.14 Aligned_cols=26 Identities=15% Similarity=-0.013 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHh
Q 006246 364 TWNAMIGGLAMHGRADDAIELFFKMQ 389 (654)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~l~~~m~ 389 (654)
.|..+...|...|++++|+..|++..
T Consensus 21 ~~~~lg~~~~~~g~~~~A~~~~~~al 46 (115)
T 2kat_A 21 LRFTLGKTYAEHEQFDAALPHLRAAL 46 (115)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 33333333333444444444444333
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.81 E-value=0.0039 Score=49.30 Aligned_cols=63 Identities=16% Similarity=0.097 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006246 362 VFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQ 425 (654)
Q Consensus 362 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 425 (654)
...|..+...|...|++++|+..|++..+.. +.+...|..+..++...|++++|.+.|++..+
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444455555555555555555555554432 11233444455555555555555555554443
No 209
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.76 E-value=0.011 Score=45.13 Aligned_cols=61 Identities=16% Similarity=0.202 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006246 364 TWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQ 425 (654)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 425 (654)
.|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+++..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 44444455555555555555555554432 11333444455555555555555555555544
No 210
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.75 E-value=0.007 Score=51.41 Aligned_cols=84 Identities=18% Similarity=0.112 Sum_probs=52.1
Q ss_pred CCcchHHHHHHHHHHcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCCchH
Q 006246 431 PEVEHYGCIVDLLGRAG---YLAEAEEVISSM-PME-P--NAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDD 503 (654)
Q Consensus 431 p~~~~~~~li~~~~~~g---~~~~A~~~~~~m-~~~-p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 503 (654)
++..+.-.+..++.+.+ ++++++.++++. ... | +...+-.|.-+|.+.|++++|.+.++++++++|++. +
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~---Q 106 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNN---Q 106 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCH---H
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH---H
Confidence 34444444444555544 334555555443 111 3 245566778889999999999999999999999874 4
Q ss_pred HHHHHH----HHHhcCCc
Q 006246 504 VAKMRK----LMKERGIK 517 (654)
Q Consensus 504 a~~~~~----~m~~~g~~ 517 (654)
|..+.+ .+.+.|+.
T Consensus 107 A~~Lk~~ie~~~~kdgl~ 124 (152)
T 1pc2_A 107 AKELERLIDKAMKKDGLV 124 (152)
T ss_dssp HHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhhHH
Confidence 554443 34445553
No 211
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.68 E-value=0.0027 Score=54.51 Aligned_cols=94 Identities=16% Similarity=0.075 Sum_probs=51.3
Q ss_pred CChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCC----------HHHHHHHHhhcCC---CCHHHHHHHHHHHHHc-
Q 006246 310 GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGR----------LDMAWKVFEDMKM---KEVFTWNAMIGGLAMH- 375 (654)
Q Consensus 310 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~----------~~~A~~~~~~m~~---~~~~~~~~li~~~~~~- 375 (654)
+.+++|.+.++..++.. +.+...++.+..++...|+ +++|+..|++..+ .+..+|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 34444555555444443 2344444444444444443 3466666665543 2445666666666655
Q ss_pred ----------CChhHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 006246 376 ----------GRADDAIELFFKMQREKMRPDRITFACVLSA 406 (654)
Q Consensus 376 ----------g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 406 (654)
|++++|++.|++.++. .|+...|...+..
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~ 133 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEM 133 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 3677777777777774 5666655554443
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.62 E-value=0.044 Score=54.07 Aligned_cols=138 Identities=11% Similarity=-0.001 Sum_probs=90.4
Q ss_pred CCHHHHHHHHHHHH--HcC---ChhHHHHHHHHHhhcCCCCCH-HHHHHHHHHHH----ccC----CHHHHHHHHHHHHH
Q 006246 360 KEVFTWNAMIGGLA--MHG---RADDAIELFFKMQREKMRPDR-ITFACVLSACA----HAG----MIDRGLQALTYMQQ 425 (654)
Q Consensus 360 ~~~~~~~~li~~~~--~~g---~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~----~~g----~~~~a~~~~~~~~~ 425 (654)
.+...|...+.+.. ..+ ...+|+.+|++.++. .|+. ..|..+..++. ..+ ......+.++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 35666666665543 223 357888888888885 5553 33433333332 111 11111122222211
Q ss_pred HcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCC
Q 006246 426 MYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-PMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 426 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 499 (654)
....+.+...|..+...+...|++++|...++++ ...|+...|..+...+...|++++|...+++++.++|...
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 1122456777888877777889999999999988 3458888888889999999999999999999999999853
No 213
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.61 E-value=0.015 Score=44.28 Aligned_cols=79 Identities=18% Similarity=0.143 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 006246 262 ITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMY 341 (654)
Q Consensus 262 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 341 (654)
..|..+...+...|++++|+..|++..... +.+...+..+..++...|++++|...+..+.+.. +.+...+..+...+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345555556666666666666666655542 2233344445555555555555555555555443 22333444444443
Q ss_pred H
Q 006246 342 A 342 (654)
Q Consensus 342 ~ 342 (654)
.
T Consensus 88 ~ 88 (91)
T 1na3_A 88 Q 88 (91)
T ss_dssp H
T ss_pred H
Confidence 3
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.51 E-value=0.0072 Score=47.33 Aligned_cols=61 Identities=18% Similarity=0.241 Sum_probs=45.4
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCC
Q 006246 439 IVDLLGRAGYLAEAEEVISSM-PMEP-NAA-VWEALLGACRKHGEVEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 439 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 499 (654)
....+.+.|++++|++.+++. ...| +.. .|..+...+...|++++|+..++++++++|++.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 69 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP 69 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Confidence 445667778888888877766 2233 456 777888888888888888888888888888775
No 215
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.51 E-value=0.25 Score=55.37 Aligned_cols=103 Identities=15% Similarity=0.171 Sum_probs=60.9
Q ss_pred HHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 006246 340 MYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQA 419 (654)
Q Consensus 340 ~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 419 (654)
....+|++++|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++
T Consensus 661 ~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~ 729 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTL 729 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHH
Confidence 3455677777777766553 456777777777777777777777776643 23344444445666554444
Q ss_pred HHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhCC
Q 006246 420 LTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMP 460 (654)
Q Consensus 420 ~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (654)
-+..... | -++.-..+|.+.|++++|++++.++.
T Consensus 730 ~~~a~~~-~------~~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 730 AKDAETT-G------KFNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHc-C------chHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 4433331 1 23444445556666666666666554
No 216
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.36 E-value=0.015 Score=46.37 Aligned_cols=78 Identities=17% Similarity=0.138 Sum_probs=53.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCCchHHHH
Q 006246 436 YGCIVDLLGRAGYLAEAEEVISSM-----P----MEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVAK 506 (654)
Q Consensus 436 ~~~li~~~~~~g~~~~A~~~~~~m-----~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~a~~ 506 (654)
+-.|...+.+.|+++.|...++.. + ..+...++..|..++.+.|+++.|...++++++++|++.....-..
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 344555556666666666655543 0 1235778899999999999999999999999999999863333333
Q ss_pred HHHHHHh
Q 006246 507 MRKLMKE 513 (654)
Q Consensus 507 ~~~~m~~ 513 (654)
.++.+.+
T Consensus 88 ~~~~~~~ 94 (104)
T 2v5f_A 88 YFEYIMA 94 (104)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4454443
No 217
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.14 E-value=0.27 Score=42.76 Aligned_cols=129 Identities=15% Similarity=0.163 Sum_probs=90.5
Q ss_pred HHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 006246 339 DMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQ 418 (654)
Q Consensus 339 ~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 418 (654)
+...++|+++.|.++.+.+ .+...|..|......+|+++-|.+.|++... |..+.-.|.-.|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 4456789999999988776 4678899999999999999999999988764 3445555666788776555
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHH
Q 006246 419 ALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKIL 491 (654)
Q Consensus 419 ~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 491 (654)
+-+..... | -++.-...+.-.|+++++.+++.+.+.-|... -....+|..+.|.++.+.+
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 54444432 2 35556666778899999999998876433222 2234577777777665544
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.07 E-value=0.0048 Score=48.38 Aligned_cols=56 Identities=13% Similarity=0.162 Sum_probs=30.1
Q ss_pred HHHHHHcCChhHHHHHHHHHhhcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006246 369 IGGLAMHGRADDAIELFFKMQREKMRPDRI-TFACVLSACAHAGMIDRGLQALTYMQQ 425 (654)
Q Consensus 369 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~ 425 (654)
...+...|++++|+..|++..+.. +.+.. .+..+..++...|++++|.+.|++..+
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555566666666666655542 11333 455555555555666666666655554
No 219
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.07 E-value=0.039 Score=42.77 Aligned_cols=70 Identities=13% Similarity=0.024 Sum_probs=54.8
Q ss_pred CCCcchHHHHHHHHHHcCC---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCC
Q 006246 430 DPEVEHYGCIVDLLGRAGY---LAEAEEVISSM-PMEP-NAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 430 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 499 (654)
+++...+..+..++...++ .++|..++++. ...| ++..+..+...+...|++++|+..++++++.+|.++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 3456667777777765554 68888888877 3444 578888889999999999999999999999999843
No 220
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.66 E-value=0.021 Score=58.57 Aligned_cols=57 Identities=7% Similarity=-0.113 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHhhcCC----------CC-HHHHHHHHHHHHHcCChhHHHHHHHHH
Q 006246 332 VLGTALVDMYAKCGRLDMAWKVFEDMKM----------KE-VFTWNAMIGGLAMHGRADDAIELFFKM 388 (654)
Q Consensus 332 ~~~~~li~~y~~~g~~~~A~~~~~~m~~----------~~-~~~~~~li~~~~~~g~~~~A~~l~~~m 388 (654)
.+++.|..+|...|++++|..++++... |+ ..+++.|...|...|++++|+.+|++.
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 3445555555555555555555444321 11 123444444455555555554444444
No 221
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.53 E-value=0.27 Score=48.54 Aligned_cols=70 Identities=9% Similarity=0.088 Sum_probs=42.7
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcch
Q 006246 361 EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEH 435 (654)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~ 435 (654)
+..+|..+...+...|++++|+..++++...+ |+...|..+...+.-.|++++|.+.+++... +.|...+
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr---L~P~~~t 345 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN---LRPGANT 345 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCSHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCcCh
Confidence 55566666555555666666666666666653 5655565556666666666666666666654 2455443
No 222
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.41 E-value=0.063 Score=55.08 Aligned_cols=86 Identities=10% Similarity=0.094 Sum_probs=45.2
Q ss_pred HHHHcCCHHHHHHHHhhcCC-------C-C---HHHHHHHHHHHHHcCChhHHHHHHHHHhhc-----C-CCCCH-HHHH
Q 006246 340 MYAKCGRLDMAWKVFEDMKM-------K-E---VFTWNAMIGGLAMHGRADDAIELFFKMQRE-----K-MRPDR-ITFA 401 (654)
Q Consensus 340 ~y~~~g~~~~A~~~~~~m~~-------~-~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g-~~p~~-~t~~ 401 (654)
-+.+.|++++|+..+++... + + ..+++.+...|...|++++|+.++++.++- | -.|+. .+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 34455666666666654432 1 1 235666666666666666666666655431 1 11211 2455
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHH
Q 006246 402 CVLSACAHAGMIDRGLQALTYMQQ 425 (654)
Q Consensus 402 ~ll~~~~~~g~~~~a~~~~~~~~~ 425 (654)
.|...|...|++++|..++++..+
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 555556666666666655555443
No 223
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.39 E-value=0.18 Score=41.00 Aligned_cols=80 Identities=18% Similarity=0.124 Sum_probs=51.6
Q ss_pred CCcchHHHHHHHHHHcCCHHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCCchH
Q 006246 431 PEVEHYGCIVDLLGRAGYLAE---AEEVISSM-PME-P--NAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDD 503 (654)
Q Consensus 431 p~~~~~~~li~~~~~~g~~~~---A~~~~~~m-~~~-p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 503 (654)
|+..+--.+..++.+.....+ ++.++++. ... | .....-.|.-++.+.|+++.|.+.++.+++++|+| ..
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n---~Q 109 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN---NQ 109 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC---HH
Confidence 444444445555555554444 55555554 111 2 22334567778999999999999999999999987 46
Q ss_pred HHHHHHHHHh
Q 006246 504 VAKMRKLMKE 513 (654)
Q Consensus 504 a~~~~~~m~~ 513 (654)
|..+.+.+.+
T Consensus 110 A~~Lk~~i~~ 119 (126)
T 1nzn_A 110 AKELERLIDK 119 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666555543
No 224
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.23 E-value=2.1e-05 Score=78.81 Aligned_cols=274 Identities=15% Similarity=0.155 Sum_probs=147.8
Q ss_pred ChHHHHHHHhcCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHH
Q 006246 82 NFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVK 161 (654)
Q Consensus 82 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 161 (654)
+++.|.+.-++...|. .|..|..+....++..+|++.|-+. -|+..|..++.++.+.|.++.-...+....+
T Consensus 40 ~ldRa~eyA~~~n~p~--VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk 111 (624)
T 3lvg_A 40 NLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARK 111 (624)
T ss_dssp CSTTTTTSSSSCCCCC--CSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTST
T ss_pred ccHHHHHHHHHhCCcc--HHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3444444444444444 4888888888888888887665322 2666788888888888888887777766655
Q ss_pred hCCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 006246 162 NGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFA 241 (654)
Q Consensus 162 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~ 241 (654)
. ..++.+=+.|+-+|++.+++.+-.+.+ ..+|+.-...+.+-|...|.++.|.-+|..+.. |.-|...+.
T Consensus 112 ~--~ke~~IDteLi~ayAk~~rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-----~akLAstLV 181 (624)
T 3lvg_A 112 K--ARESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLV 181 (624)
T ss_dssp T--CCSTTTTHHHHHHHHTSCSSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----CTTTSSSSS
T ss_pred H--hcccccHHHHHHHHHhhCcHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----HHHHHHHHH
Confidence 4 345566678888888888866544333 335565666777777788887777777766543 111112222
Q ss_pred hcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 006246 242 RFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDH 321 (654)
Q Consensus 242 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 321 (654)
+.|++..|.+.-++ ..++.+|-.+-.+|...+.+.-|--.--.+. +.| ..+..++..|...|.+++-+.+++.
T Consensus 182 ~L~~yq~AVdaArK--Ans~ktWKeV~~ACvd~~EfrLAqicGLniI---vha--deL~elv~~YE~~G~f~ELIsLlEa 254 (624)
T 3lvg_A 182 HLGEYQAAVDGARK--ANSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHA--DELEELINYYQDRGYFEELITMLEA 254 (624)
T ss_dssp SCSGGGSSTTTTTT--CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH---CCS--SCCSGGGSSSSTTCCCTTSTTTHHH
T ss_pred HHHHHHHHHHHHHh--cCChhHHHHHHHHHhCchHHHHHHHhcchhc---ccH--HHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 33333333221111 1234455555555555555544432221211 111 1122334445555555555555554
Q ss_pred HHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC----C-------CHHHHHHHHHHHHHcCChhHHH
Q 006246 322 VKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM----K-------EVFTWNAMIGGLAMHGRADDAI 382 (654)
Q Consensus 322 ~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~----~-------~~~~~~~li~~~~~~g~~~~A~ 382 (654)
..... .....+|+-|.-.|+|- ++++-.+-++..-. | ....|.-++-.|.+-.+++.|.
T Consensus 255 glglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 255 ALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 43211 23445556666666553 33333333332211 1 2345666666666666666554
No 225
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.02 E-value=1.6 Score=37.90 Aligned_cols=127 Identities=10% Similarity=0.084 Sum_probs=70.8
Q ss_pred HHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHH
Q 006246 240 FARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIH 319 (654)
Q Consensus 240 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 319 (654)
..++|+++.|.++.+.+ .+...|..+.......|+++-|.+.|.+... |..+.-.|...|+.+.-..+-
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 34457777776666655 3456677777777777777777777766542 334444555566666555555
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 006246 320 DHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKM 388 (654)
Q Consensus 320 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 388 (654)
+.....| -++.-...+.-.|+++++.++|.+...-+.. .......|..+.|.++.+++
T Consensus 84 ~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA-----~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 84 NIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLA-----YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHH-----HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHH-----HHHHHHcCcHHHHHHHHHHh
Confidence 4444444 1233333444567777777766554432111 11112255566666666554
No 226
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.45 E-value=0.041 Score=55.64 Aligned_cols=365 Identities=10% Similarity=0.057 Sum_probs=223.0
Q ss_pred CchhHHHHHHHhcccccCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHH
Q 006246 63 QDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKA 142 (654)
Q Consensus 63 ~~~~~~~~Li~~y~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 142 (654)
..+.+|+.|..++.+ .+++.+|++-|= ...|+..|..+|.+..+.|.+++-+..+.-.++..- ++..=+.|+-+
T Consensus 52 n~p~VWs~LgkAqL~--~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~a 125 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQ--KGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFA 125 (624)
T ss_dssp CCCCCSSSHHHHTTT--SSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHH
T ss_pred CCccHHHHHHHHHHc--cCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHH
Confidence 357889999999999 899999888774 345667789999999999999999988876665432 44444678889
Q ss_pred HhccCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhcC------------------------CCCC
Q 006246 143 CSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDG------------------------SKSD 198 (654)
Q Consensus 143 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~------------------------~~~~ 198 (654)
|++.+++.+-.+.+. .|+..-...+.+-+...|.++.|+-+|..+ ...+
T Consensus 126 yAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns 198 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS 198 (624)
T ss_dssp HHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCS
T ss_pred HHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999988776443321 366666777788888888888888888663 1246
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHH------------------------------HhcC---CCCcchHHHHHHHHHhcCC
Q 006246 199 VICWNALIDGYLKCGDIEGAKELF------------------------------KSTK---DKNTGSYNAMISGFARFGR 245 (654)
Q Consensus 199 ~~~~~~li~~~~~~g~~~~A~~~~------------------------------~~m~---~~~~~~~~~li~~~~~~g~ 245 (654)
+.+|-.+-.+|...+.+..|...- +... +.....|+-|.-.|+|- +
T Consensus 199 ~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~ 277 (624)
T 3lvg_A 199 TRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-K 277 (624)
T ss_dssp SCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-C
T ss_pred hhHHHHHHHHHhCchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-C
Confidence 788999888888777766553322 1111 12334577777777775 3
Q ss_pred HHHHHHHHHhcCC----C-------CHhHHHHHHHHHHhcCChHHHHHHH-------------HHHHhCCCCCCcch---
Q 006246 246 FEEARKLFNEMND----K-------DEITWSAIIDGYTKDGYYKEALEVF-------------NEMQRDKIKPRKFV--- 298 (654)
Q Consensus 246 ~~~A~~~~~~~~~----~-------~~~~~~~li~~~~~~g~~~~A~~~~-------------~~m~~~g~~p~~~t--- 298 (654)
.++-.+.++..-. | ....|.-++-.|.+-.+++.|.... .+.... .+|...
T Consensus 278 PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~K--VaN~EiyYK 355 (624)
T 3lvg_A 278 PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANVELYYR 355 (624)
T ss_dssp TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGG--CSCSHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHH--cchHHHHHH
Confidence 3333333332221 1 4456888888888888888765431 111000 122222
Q ss_pred ------------HHHHHHHHHhcCChhHHHHHHHHHHHc----------CCCCchhHHHHHHHHHHHcCCHHHHHHHHhh
Q 006246 299 ------------LSCVLAACASLGALDQGIWIHDHVKRN----------SICVDAVLGTALVDMYAKCGRLDMAWKVFED 356 (654)
Q Consensus 299 ------------~~~ll~~~~~~g~~~~a~~~~~~~~~~----------~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 356 (654)
++-+|.++...=+...+.+++...-.. .-..+..+-.++-+.|....+++.-+...+.
T Consensus 356 Ai~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~ 435 (624)
T 3lvg_A 356 AIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDA 435 (624)
T ss_dssp HHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSS
T ss_pred HHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 334444444444444444444332110 0112345566777788887777665554443
Q ss_pred cCCC------------CHHHHH-HHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006246 357 MKMK------------EVFTWN-AMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYM 423 (654)
Q Consensus 357 m~~~------------~~~~~~-~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 423 (654)
-..- +..-+. .-...|.+++++++++++.++ .++ |.-.+...+.+|+.+-+.++++..
T Consensus 436 ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~Kk---Dkl------ykDAietAa~S~~~elaeeLL~yF 506 (624)
T 3lvg_A 436 YDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKK---DSL------YKDAMQYASESKDTELAEELLQWF 506 (624)
T ss_dssp CCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSST---TCC------TTGGGTTTTTCCCTTHHHHHHHHH
T ss_pred hccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHh---ccc------HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3222 222222 223446677788888776432 122 222344556778888888888888
Q ss_pred HHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHH
Q 006246 424 QQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVI 456 (654)
Q Consensus 424 ~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 456 (654)
.+. | +.+.|.+.+-.|...=+++-++++-
T Consensus 507 v~~-g---~~EcF~a~LytCYdLlrpDvVlEla 535 (624)
T 3lvg_A 507 LQE-E---KRECFGACLFTCYDLLRPDVVLETA 535 (624)
T ss_dssp HHH-C---STHHHHHHHHHTSSSSSCHHHHHHH
T ss_pred HHc-C---chHHHHHHHHHHhhccChHHHHHHH
Confidence 774 3 3455666655555666777777764
No 227
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=92.94 E-value=2.2 Score=34.88 Aligned_cols=84 Identities=10% Similarity=-0.032 Sum_probs=55.5
Q ss_pred cCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 006246 243 FGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHV 322 (654)
Q Consensus 243 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 322 (654)
+|++......+-.+.. +....+..++.+...|+-++-.+++..+.. +.+|++..+..+..||.+.|+..++.+++.++
T Consensus 74 C~NlKrVi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A 151 (172)
T 1wy6_A 74 CQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEA 151 (172)
T ss_dssp CSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 4444444444443322 334456667777888888888888877544 34667777777888888888888888888887
Q ss_pred HHcCCC
Q 006246 323 KRNSIC 328 (654)
Q Consensus 323 ~~~~~~ 328 (654)
-+.|++
T Consensus 152 C~kG~k 157 (172)
T 1wy6_A 152 CKKGEK 157 (172)
T ss_dssp HHTTCH
T ss_pred HHhhhH
Confidence 777753
No 228
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=92.52 E-value=0.31 Score=46.05 Aligned_cols=51 Identities=10% Similarity=0.017 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHhC-CCCC--CHHHHHHHHHHHHH-hCChHHHHHHHHHHHhcCCC
Q 006246 447 GYLAEAEEVISSM-PMEP--NAAVWEALLGACRK-HGEVEFGERLGKILLEMEPQ 497 (654)
Q Consensus 447 g~~~~A~~~~~~m-~~~p--~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~p~ 497 (654)
|+.++|.+.|++. .+.| +..++......++. .|+.++|.+.++++++..|.
T Consensus 218 Gd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 218 GGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp CCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred CCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 4444444444443 2223 13344444444444 25555555555555555554
No 229
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=92.44 E-value=1.5 Score=33.62 Aligned_cols=47 Identities=4% Similarity=0.032 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006246 378 ADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQ 425 (654)
Q Consensus 378 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 425 (654)
.++|..+|++.++.. +-+......+...+.+.|++++|+.+|+.+.+
T Consensus 25 ~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 25 TDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345555555554432 11223344444444555555555555555543
No 230
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=92.29 E-value=0.67 Score=39.20 Aligned_cols=83 Identities=12% Similarity=-0.009 Sum_probs=54.8
Q ss_pred hHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHHHcCCCC--CcchHHHHHHHHHHcCCHHHHH
Q 006246 379 DDAIELFFKMQREKMRPDRITFACVLSACAHAG---MIDRGLQALTYMQQMYGIDP--EVEHYGCIVDLLGRAGYLAEAE 453 (654)
Q Consensus 379 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g---~~~~a~~~~~~~~~~~g~~p--~~~~~~~li~~~~~~g~~~~A~ 453 (654)
..+.+-|.+..+.|. ++..+-..+..++.+++ ++++|+.+|+...+. . .| ....+-.|.-+|.+.|++++|.
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 455556666655553 56666666777777777 566888888887774 2 24 2445555666778888888888
Q ss_pred HHHHhC-CCCCC
Q 006246 454 EVISSM-PMEPN 464 (654)
Q Consensus 454 ~~~~~m-~~~p~ 464 (654)
+.++.+ ..+|+
T Consensus 92 ~y~~~lL~ieP~ 103 (152)
T 1pc2_A 92 KYVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHHCTT
T ss_pred HHHHHHHhcCCC
Confidence 888876 44553
No 231
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=91.37 E-value=3.7 Score=34.00 Aligned_cols=48 Identities=25% Similarity=0.368 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCCchHHHHHH----HHHHhcCCc
Q 006246 467 VWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMR----KLMKERGIK 517 (654)
Q Consensus 467 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~a~~~~----~~m~~~g~~ 517 (654)
..-.|.-++.+.|+++.|.++.+.+++++|+| ..|..+. +.|.+.|+.
T Consensus 79 cLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n---~QA~~Lk~~Ie~~i~kdGli 130 (144)
T 1y8m_A 79 CLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN---KQVGALKSMVEDKIQKETLK 130 (144)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC---HHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHHHHhchh
Confidence 34456778999999999999999999999987 4555554 444555653
No 232
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.20 E-value=1.2 Score=36.37 Aligned_cols=46 Identities=24% Similarity=0.376 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHh
Q 006246 465 AAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRKLMKE 513 (654)
Q Consensus 465 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~a~~~~~~m~~ 513 (654)
...+--|.-|+.+.|+++.|.+..+.+++++|+| ..|..+.+.+.+
T Consensus 78 Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N---~QA~~Lk~~Ie~ 123 (134)
T 3o48_A 78 RECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN---KQVGALKSMVED 123 (134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHH
Confidence 4455667788999999999999999999999987 566666665544
No 233
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=90.85 E-value=1.5 Score=34.22 Aligned_cols=59 Identities=8% Similarity=-0.055 Sum_probs=27.7
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhcC------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006246 367 AMIGGLAMHGRADDAIELFFKMQREK------MRPDRITFACVLSACAHAGMIDRGLQALTYMQQ 425 (654)
Q Consensus 367 ~li~~~~~~g~~~~A~~l~~~m~~~g------~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 425 (654)
.|...+.+.|++..|...|++..+.- -.+....+..+..++.+.|+++.|..+++.+.+
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 44445555555555555555544320 011233444444555555555555555555543
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=90.68 E-value=1.8 Score=36.27 Aligned_cols=112 Identities=17% Similarity=0.180 Sum_probs=76.1
Q ss_pred CCCcchHHHHHHHHHhCCCc------hHHHHHHHHhHhCCCCCCcc----cHHHHHH---HHhccCCcHHHHHHHHHHHH
Q 006246 95 KPNVFVWNSVLRACLEHNEP------WRVISLYSEMVGVDSKPNKF----TYPTVFK---ACSITEADKEGVQVHAHVVK 161 (654)
Q Consensus 95 ~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~~~----t~~~ll~---~~~~~~~~~~a~~~~~~~~~ 161 (654)
..|..+|-..+...-+.|++ ++.+++|++.... ++|+.. .|..+.- .+...+|.+.|+++|..+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45777888888888888888 8888888888764 566532 1211111 12334789999999999987
Q ss_pred hCCCCChhhHHHHHHHHHhcCCHHHHHHHHhc---CCCCChhhHHHHHHH
Q 006246 162 NGLCGDVHVKSSGIQMYACFGCVNKARQILDD---GSKSDVICWNALIDG 208 (654)
Q Consensus 162 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~---~~~~~~~~~~~li~~ 208 (654)
..-.- ..+|......-.+.|++..|++++.+ |.+.+.....+.++-
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~n 137 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRN 137 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHH
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHh
Confidence 63222 66777777888889999999998876 344455554444443
No 235
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=89.73 E-value=7.4 Score=31.88 Aligned_cols=63 Identities=14% Similarity=0.109 Sum_probs=42.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCC
Q 006246 365 WNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGI 429 (654)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~ 429 (654)
.+.-+..+...|+-++-.+++..+.. +-+|++.....+..||.+.|+..++.+++.++-+. |+
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k-G~ 156 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK-GE 156 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hh
Confidence 44456666777777777777777544 23666777777777777777777777777777663 54
No 236
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=89.27 E-value=1.5 Score=36.72 Aligned_cols=53 Identities=13% Similarity=0.010 Sum_probs=39.7
Q ss_pred cCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Q 006246 446 AGYLAEAEEVISSM-P-MEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN 498 (654)
Q Consensus 446 ~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 498 (654)
.++.++|.++|+.+ . .+.=+.+|-....--.++|++..|.+++.+++.+.|.+
T Consensus 73 i~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 36667777777666 1 11117788877777889999999999999999988875
No 237
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=88.69 E-value=17 Score=34.76 Aligned_cols=132 Identities=12% Similarity=0.051 Sum_probs=71.9
Q ss_pred HHHHHHHhcccccCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCCchHHHHH----HHHhHhCCCCCCcccHHHHHHH
Q 006246 67 VSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISL----YSEMVGVDSKPNKFTYPTVFKA 142 (654)
Q Consensus 67 ~~~~Li~~y~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~ 142 (654)
.+-++..-|.+ .+++++|++++-.. ...+.+.|+...|-++ .+-..+.++++|..+...++..
T Consensus 35 ~~Rtl~~Ry~~--~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l 101 (312)
T 2wpv_A 35 TLRTIANRYVR--SKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRL 101 (312)
T ss_dssp HHHHHHHHHHH--TTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 45566777777 88899998887542 2344556766655554 4444556777777777777666
Q ss_pred HhccCCcH-HHHHHHHHHH----HhCC--CCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHH
Q 006246 143 CSITEADK-EGVQVHAHVV----KNGL--CGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLK 211 (654)
Q Consensus 143 ~~~~~~~~-~a~~~~~~~~----~~g~--~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 211 (654)
+.....-+ .=..+...++ +.|- ..|+.....+...|.+.|++.+|+.-|-.....|...+..++.-+.+
T Consensus 102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~ 177 (312)
T 2wpv_A 102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLC 177 (312)
T ss_dssp HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHH
Confidence 54432111 1122222332 2321 23555666666666666666666665543333334444444433333
No 238
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=87.72 E-value=7.8 Score=29.63 Aligned_cols=86 Identities=12% Similarity=0.136 Sum_probs=63.5
Q ss_pred ChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q 006246 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQR 390 (654)
Q Consensus 311 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 390 (654)
..++|..|-+.+...+. ...+--.-+..+...|++++|..+.+....||+..|-+|-. .+.|..+++...+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 56777777777776653 33333333455778999999999999999999999988754 567888888888888887
Q ss_pred cCCCCCHHHHH
Q 006246 391 EKMRPDRITFA 401 (654)
Q Consensus 391 ~g~~p~~~t~~ 401 (654)
+| .|....|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 76 45555554
No 239
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.54 E-value=21 Score=34.44 Aligned_cols=130 Identities=12% Similarity=0.087 Sum_probs=70.0
Q ss_pred HHHHHHHhcccccCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCCchHHHHHH----HHhHhCCCCCCcccHHHHHHH
Q 006246 67 VSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLY----SEMVGVDSKPNKFTYPTVFKA 142 (654)
Q Consensus 67 ~~~~Li~~y~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~ 142 (654)
.+-++..-|.+ .+++++|++++-.- ...+.+.|+...|-++- +-..+.++++|..+...++..
T Consensus 37 ~~RTi~~Ry~~--~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L 103 (336)
T 3lpz_A 37 ETRLVAARYSK--QGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGC 103 (336)
T ss_dssp HHHHHHHHHHH--TTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHh--hcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 34455666777 88899998886432 23455667666555543 444556777887777777766
Q ss_pred HhccCCcH-HHHHHHHHHH----HhC--CCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHH
Q 006246 143 CSITEADK-EGVQVHAHVV----KNG--LCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGY 209 (654)
Q Consensus 143 ~~~~~~~~-~a~~~~~~~~----~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 209 (654)
+.....-+ .=..+...++ +.| ...|+.....+...|.+.+++.+|+.-|=....+++..+..++.-+
T Consensus 104 ~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 104 LRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEW 177 (336)
T ss_dssp HTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHH
T ss_pred HHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 65544311 1122222222 223 2235555556666666666666666555333322334443333333
No 240
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=87.42 E-value=7.3 Score=29.73 Aligned_cols=86 Identities=15% Similarity=0.144 Sum_probs=63.5
Q ss_pred ChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q 006246 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQR 390 (654)
Q Consensus 311 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 390 (654)
..++|..|-+.+...+. ...+--.-+..+...|++++|..+.+....||+.+|-+|-. .+.|..+++...+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 56777777777776653 33333333455778999999999999999999999988754 578888888888888887
Q ss_pred cCCCCCHHHHH
Q 006246 391 EKMRPDRITFA 401 (654)
Q Consensus 391 ~g~~p~~~t~~ 401 (654)
+| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 76 45555554
No 241
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=86.83 E-value=2.6 Score=39.85 Aligned_cols=66 Identities=12% Similarity=-0.042 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhc-CChhHHHHHHHHHHHcCCC
Q 006246 263 TWSAIIDGYTKD-----GYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL-GALDQGIWIHDHVKRNSIC 328 (654)
Q Consensus 263 ~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~ 328 (654)
.|..+...|.+. |+.++|.+.|++.++.+..-+..++......++.. |+.+.+.+.++++++....
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 455555555553 56666666666665542111234444444444442 5566666666665554443
No 242
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=85.97 E-value=5.2 Score=38.21 Aligned_cols=61 Identities=10% Similarity=0.163 Sum_probs=47.4
Q ss_pred HHHhCCCCCC--HHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHhcC
Q 006246 455 VISSMPMEPN--AAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRKLMKERG 515 (654)
Q Consensus 455 ~~~~m~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~a~~~~~~m~~~g 515 (654)
+|...+++|. .-+..+-+..+.+++|+..|...+++++++.|....-+.|.++...-.+.+
T Consensus 195 YFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a~qArkil~~ce~~~ 257 (325)
T 3mv2_A 195 YFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRAEQARKIKNKADSMA 257 (325)
T ss_dssp HGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHTSC
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC
Confidence 4445566664 566788889999999999999999999999997666667777776665543
No 243
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.02 E-value=36 Score=34.63 Aligned_cols=185 Identities=11% Similarity=0.091 Sum_probs=115.7
Q ss_pred CChHHHHHHHHHHHhC-----CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCchh--HHHHHHHHHHHcCC
Q 006246 275 GYYKEALEVFNEMQRD-----KIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRN-SICVDAV--LGTALVDMYAKCGR 346 (654)
Q Consensus 275 g~~~~A~~~~~~m~~~-----g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~--~~~~li~~y~~~g~ 346 (654)
|++++|++.+..+.+. +..........++..|...++++...+.+..+.+. |...... ..+.++........
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 6789998887666542 23444556778889999999999988877766553 3222211 11222333323332
Q ss_pred H--HHHHHHHhhcCC---C-------CHHHHHHHHHHHHHcCChhHHHHHHHHHhhc--CCCCC---HHHHHHHHHHHHc
Q 006246 347 L--DMAWKVFEDMKM---K-------EVFTWNAMIGGLAMHGRADDAIELFFKMQRE--KMRPD---RITFACVLSACAH 409 (654)
Q Consensus 347 ~--~~A~~~~~~m~~---~-------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~---~~t~~~ll~~~~~ 409 (654)
. +.-..+.+.... . .......|...|...|++.+|.+++.++... |..+. ...+...+..|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 2 222333333322 1 1123456778888999999999999998653 32222 1245666778889
Q ss_pred cCCHHHHHHHHHHHHHH-cCCCCC----cchHHHHHHHHHHcCCHHHHHHHHHhC
Q 006246 410 AGMIDRGLQALTYMQQM-YGIDPE----VEHYGCIVDLLGRAGYLAEAEEVISSM 459 (654)
Q Consensus 410 ~g~~~~a~~~~~~~~~~-~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (654)
.+++.+|..++.++... +...+. ...|.+++..+...+++.+|...|.+.
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999999999887532 122222 235677888888899999988776654
No 244
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=85.00 E-value=44 Score=35.61 Aligned_cols=249 Identities=10% Similarity=0.021 Sum_probs=126.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChh
Q 006246 234 NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALD 313 (654)
Q Consensus 234 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 313 (654)
+.-+..+.+.+++......+.. ...+...-.....+....|+..+|....+.+-..| .........++..+.+.|.+.
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt 153 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQD 153 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCC
Confidence 3344555666677766665554 33344444455566666777666766666665554 334455666666666555443
Q ss_pred HH--HHHHHHHHHcC-----------CCCch-hHHHHHHHHHHHcCCHHHHHHHHhhcCCCCHH---HHHHHHHHHHHcC
Q 006246 314 QG--IWIHDHVKRNS-----------ICVDA-VLGTALVDMYAKCGRLDMAWKVFEDMKMKEVF---TWNAMIGGLAMHG 376 (654)
Q Consensus 314 ~a--~~~~~~~~~~~-----------~~~~~-~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~---~~~~li~~~~~~g 376 (654)
.. .+=+..+...| ++++. .....++..+.+ ...+....... .++.. .+..-+.-+.+.
T Consensus 154 ~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~~~~~~~-~~~~~~~~~~~~~~~rlar~- 228 (618)
T 1qsa_A 154 PLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFARTT-GATDFTRQMAAVAFASVARQ- 228 (618)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHHS-CCCHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC---hHhHHHHHhcc-CCChhhHHHHHHHHHHHHhc-
Confidence 21 11112222211 11111 111222222221 12222222221 11111 111122233333
Q ss_pred ChhHHHHHHHHHhhcCCCCCHHHHH----HHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHH
Q 006246 377 RADDAIELFFKMQREKMRPDRITFA----CVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEA 452 (654)
Q Consensus 377 ~~~~A~~l~~~m~~~g~~p~~~t~~----~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A 452 (654)
+.+.|..+|....+.. ..+..... .+.......+...++...+...... .++.....-.+....+.|+++.|
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHH
Confidence 6788999888876543 22332222 2222333344345566666654432 23333333344445578999999
Q ss_pred HHHHHhCCCCC--CHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Q 006246 453 EEVISSMPMEP--NAAVWEALLGACRKHGEVEFGERLGKILLE 493 (654)
Q Consensus 453 ~~~~~~m~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 493 (654)
...|+.|+..+ .....--+..+....|+.++|..+|+++.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999996433 233334566677888999999999988875
No 245
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=84.80 E-value=6.4 Score=30.26 Aligned_cols=64 Identities=14% Similarity=0.193 Sum_probs=52.3
Q ss_pred ChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHH
Q 006246 377 RADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDL 442 (654)
Q Consensus 377 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~ 442 (654)
+.-+..+-++.+....+-|+.......+.||.+.+++..|.++|+.++.+. .+...+|..+++-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHHH
Confidence 445667777777788899999999999999999999999999999998854 3445678887753
No 246
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=84.38 E-value=57 Score=36.45 Aligned_cols=214 Identities=12% Similarity=0.047 Sum_probs=100.2
Q ss_pred HHhcCCHHHHHHHHHhcCC----CCH--hHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCC---c--chHHHHHHHH
Q 006246 240 FARFGRFEEARKLFNEMND----KDE--ITWSAIIDGYTKDGYYKEALEVFNEMQRDKI--KPR---K--FVLSCVLAAC 306 (654)
Q Consensus 240 ~~~~g~~~~A~~~~~~~~~----~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~---~--~t~~~ll~~~ 306 (654)
....|+.+++..+++.-.. .+. ..-..+.-+....|..++++.++.......- .-+ . ..-..+.-+.
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 3445666667777666553 121 2223334455666666677777666554321 000 1 1111121222
Q ss_pred HhcCC-hhHHHHHHHHHHHcCCCCch--hHHHHHHHHHHHcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHHcCChhH
Q 006246 307 ASLGA-LDQGIWIHDHVKRNSICVDA--VLGTALVDMYAKCGRLDMAWKVFEDMKMK---EVFTWNAMIGGLAMHGRADD 380 (654)
Q Consensus 307 ~~~g~-~~~a~~~~~~~~~~~~~~~~--~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~ 380 (654)
+-.|. -+++.+.+..+....- ... ...-+|...|.-.|+-+....++..+.+. ++.-.-++.-++...|+.+.
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~ 542 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL 542 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG
T ss_pred HhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH
Confidence 22232 2344444444443221 011 11123333344556666666666544321 22233344445556788888
Q ss_pred HHHHHHHHhhcCCCCCHH-HHH---HHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHH
Q 006246 381 AIELFFKMQREKMRPDRI-TFA---CVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVI 456 (654)
Q Consensus 381 A~~l~~~m~~~g~~p~~~-t~~---~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 456 (654)
+..+.+.+... .|.. -|. .+.-+|+..|+.....+++..+.++ ...++.-...+.-++.-.|+.+.+.+++
T Consensus 543 ~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 543 ADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred HHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 87777777653 2322 232 3344667778877777788777762 2222222222222333345544455555
Q ss_pred HhC
Q 006246 457 SSM 459 (654)
Q Consensus 457 ~~m 459 (654)
+.+
T Consensus 618 ~~L 620 (963)
T 4ady_A 618 QLL 620 (963)
T ss_dssp TTG
T ss_pred HHH
Confidence 443
No 247
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=84.34 E-value=2.7 Score=45.81 Aligned_cols=121 Identities=12% Similarity=0.060 Sum_probs=64.2
Q ss_pred HHHHHHhCCC-chHHHHHHHHhHhCCCCCCccc-HH-HHHHHHhccCC-cHHHHHHHHHHHHh------CCCC-Ch----
Q 006246 104 VLRACLEHNE-PWRVISLYSEMVGVDSKPNKFT-YP-TVFKACSITEA-DKEGVQVHAHVVKN------GLCG-DV---- 168 (654)
Q Consensus 104 li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t-~~-~ll~~~~~~~~-~~~a~~~~~~~~~~------g~~~-~~---- 168 (654)
++..+...|+ ++.|+++|+++.... |.... |. .++..+...++ --+|.+++.+.++. ...+ +.
T Consensus 254 Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 254 LKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 3444444555 477999999988753 43332 22 22333322222 22344444333321 1111 11
Q ss_pred ------hhHHHHHHHHHhcCCHHHHHHHHhcC---CCCChhhHHHHHHHHHHcCCHHHHHHHHHhcC
Q 006246 169 ------HVKSSGIQMYACFGCVNKARQILDDG---SKSDVICWNALIDGYLKCGDIEGAKELFKSTK 226 (654)
Q Consensus 169 ------~~~~~li~~y~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 226 (654)
.....-++.+...|+++.|.++-++. .+.+-.+|..|..+|.+.|+++.|+-.++.+.
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11222234455667777777777664 44556677777777777777777777777765
No 248
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=84.04 E-value=36 Score=38.01 Aligned_cols=260 Identities=10% Similarity=-0.001 Sum_probs=128.9
Q ss_pred HHHhcCCHHHHHHHHhcCCC----CChh--hHHHHHHHHHHcCCHHHHHHHHHhcCC-CC--------c--chHHHHHHH
Q 006246 177 MYACFGCVNKARQILDDGSK----SDVI--CWNALIDGYLKCGDIEGAKELFKSTKD-KN--------T--GSYNAMISG 239 (654)
Q Consensus 177 ~y~~~g~~~~A~~~~~~~~~----~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~-~~--------~--~~~~~li~~ 239 (654)
+....|+.++++.+++.-.. .+.. .-..+.-+....|..+++..++..... ++ . ..-.++.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 45667888888888887543 2222 223334455666666667776665443 22 1 112222222
Q ss_pred H--HhcCCHHHHHHHHHhcCCCCHhH--HH--HHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHH--HHhcCC
Q 006246 240 F--ARFGRFEEARKLFNEMNDKDEIT--WS--AIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAA--CASLGA 311 (654)
Q Consensus 240 ~--~~~g~~~~A~~~~~~~~~~~~~~--~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~g~ 311 (654)
+ .-.++-+-...+...+.+.+... .. +|...|+..|+.+....++..+.+.. +......+.-+ +...|+
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTC
T ss_pred HHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCC
Confidence 2 33344333333333333343321 12 22233445666666666666655431 22333333333 346778
Q ss_pred hhHHHHHHHHHHHcCCCCchhHHH--HHHHHHHHcCCHHHHHHHHhhcCC-C--CHHHHHHHHHHHHHcCChhHHHHHHH
Q 006246 312 LDQGIWIHDHVKRNSICVDAVLGT--ALVDMYAKCGRLDMAWKVFEDMKM-K--EVFTWNAMIGGLAMHGRADDAIELFF 386 (654)
Q Consensus 312 ~~~a~~~~~~~~~~~~~~~~~~~~--~li~~y~~~g~~~~A~~~~~~m~~-~--~~~~~~~li~~~~~~g~~~~A~~l~~ 386 (654)
.+.+..+.+.+.... .|...... ++.-+|+..|+.....+++..+.. . ++...-.+.-++...|+.+.+.++++
T Consensus 540 ~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 540 QELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred hHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 888887777776532 22222222 344556677787777667776653 2 33333333344555677666777776
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHccCCH-HHHHHHHHHHHHHcCCCCCcchHHHHHHHHHH
Q 006246 387 KMQREKMRPDRITFACVLSACAHAGMI-DRGLQALTYMQQMYGIDPEVEHYGCIVDLLGR 445 (654)
Q Consensus 387 ~m~~~g~~p~~~t~~~ll~~~~~~g~~-~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~ 445 (654)
.+.+.+ .|....-..+.-+....|.. .++...+..+.. .+|..+-..-+.+++.
T Consensus 619 ~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~----D~d~~Vrq~Ai~ALG~ 673 (963)
T 4ady_A 619 LLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK----DPVDFVRQAAMIALSM 673 (963)
T ss_dssp TGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT----CSSHHHHHHHHHHHHH
T ss_pred HHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc----CCCHHHHHHHHHHHHH
Confidence 665543 33333223333333333332 566677777764 3444444333344443
No 249
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=83.48 E-value=13 Score=28.39 Aligned_cols=78 Identities=14% Similarity=0.112 Sum_probs=52.8
Q ss_pred CcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC
Q 006246 148 ADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD 227 (654)
Q Consensus 148 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 227 (654)
..++|..|-+.+...+. ...+.-.-+..+...|++++|..+.+....||.+.|-+|.. .+.|..+++...+..+..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45667777666666542 33333334445677888999988888888888888888765 567777777776655544
Q ss_pred CC
Q 006246 228 KN 229 (654)
Q Consensus 228 ~~ 229 (654)
.+
T Consensus 97 sg 98 (115)
T 2uwj_G 97 SS 98 (115)
T ss_dssp CS
T ss_pred CC
Confidence 33
No 250
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=83.46 E-value=23 Score=31.28 Aligned_cols=59 Identities=10% Similarity=0.059 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q 006246 331 AVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQR 390 (654)
Q Consensus 331 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 390 (654)
..+-...+.++++.|..+....+.+.+..++...-...+.++.+.+. .++...+.++.+
T Consensus 126 ~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 126 WFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 33333344444444433222222222233344333444444444443 344444444443
No 251
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=83.13 E-value=2.9 Score=33.95 Aligned_cols=83 Identities=11% Similarity=-0.071 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHH---HHHHHHHHHHHcCCCC--CcchHHHHHHHHHHcCCHHHH
Q 006246 378 ADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDR---GLQALTYMQQMYGIDP--EVEHYGCIVDLLGRAGYLAEA 452 (654)
Q Consensus 378 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~---a~~~~~~~~~~~g~~p--~~~~~~~li~~~~~~g~~~~A 452 (654)
...+.+-|.+....|. |+..+-..+..++.++..... |+.+++.+.+. -.| .....-.|.-++.|.|++++|
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~--~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--GSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--SCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 3344455555544443 555555566667777665544 66777666542 112 222333455567777777777
Q ss_pred HHHHHhC-CCCC
Q 006246 453 EEVISSM-PMEP 463 (654)
Q Consensus 453 ~~~~~~m-~~~p 463 (654)
.+.++.+ ..+|
T Consensus 94 ~~~~~~lL~~eP 105 (126)
T 1nzn_A 94 LKYVRGLLQTEP 105 (126)
T ss_dssp HHHHHHHHHHCT
T ss_pred HHHHHHHHHhCC
Confidence 7777766 3445
No 252
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=83.04 E-value=14 Score=28.31 Aligned_cols=78 Identities=14% Similarity=0.063 Sum_probs=49.5
Q ss_pred CcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC
Q 006246 148 ADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD 227 (654)
Q Consensus 148 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 227 (654)
..++|..|-+.+...+. ...+.-.-+..+...|++++|..+.+....||.+.|-+|.. .+.|..+++...+..+..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45666666666665542 33333333444667788888888888888888888877765 456666666666655544
Q ss_pred CC
Q 006246 228 KN 229 (654)
Q Consensus 228 ~~ 229 (654)
.+
T Consensus 98 sg 99 (116)
T 2p58_C 98 SQ 99 (116)
T ss_dssp CC
T ss_pred CC
Confidence 33
No 253
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=82.42 E-value=41 Score=33.39 Aligned_cols=91 Identities=16% Similarity=0.101 Sum_probs=52.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCcch-----HHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCchhHHHH--
Q 006246 266 AIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFV-----LSCVLAACASLGALDQGIWIHDHVKRN--SICVDAVLGTA-- 336 (654)
Q Consensus 266 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-----~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~-- 336 (654)
-++..|...|++.+|++++.++.+.=-+.|..+ +..-+..|...+++.+++..+...... .+.+++.+...
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 577888899999999998888876422223222 333445566777777777777766542 22233332211
Q ss_pred --HHHHHH-HcCCHHHHHHHHhh
Q 006246 337 --LVDMYA-KCGRLDMAWKVFED 356 (654)
Q Consensus 337 --li~~y~-~~g~~~~A~~~~~~ 356 (654)
-.-++. ..+++..|...|-+
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~e 206 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYE 206 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHH
Confidence 122233 45666666555543
No 254
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=82.37 E-value=27 Score=40.53 Aligned_cols=164 Identities=10% Similarity=0.075 Sum_probs=92.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChh
Q 006246 234 NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALD 313 (654)
Q Consensus 234 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 313 (654)
..++..+.+.+..+.|.++..-.+ .+...--.+..+|...|++++|.+.|++.-. |+..+......+.
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~-~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~---------- 883 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLN-SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLR---------- 883 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHH----------
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcc-CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhc----------
Confidence 345566677777777776555443 4544445667788889999999999977532 2322221110000
Q ss_pred HHHHHHHHHHHcC--CCCchhHHHHHHHHHHHcCCHHHHHHHHhhcC----CCC----HHHHHHHHHHHHHcCChhHHHH
Q 006246 314 QGIWIHDHVKRNS--ICVDAVLGTALVDMYAKCGRLDMAWKVFEDMK----MKE----VFTWNAMIGGLAMHGRADDAIE 383 (654)
Q Consensus 314 ~a~~~~~~~~~~~--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~----~~~----~~~~~~li~~~~~~g~~~~A~~ 383 (654)
. +..+.... ...-..-|.-++..+.+.|.++.+.++-.... ..+ ...|..+..++...|++++|..
T Consensus 884 ~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~ 959 (1139)
T 4fhn_B 884 E----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHV 959 (1139)
T ss_dssp H----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGH
T ss_pred c----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHH
Confidence 0 01111110 01122345566666777777666655443221 222 1257888888888888888888
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHccCCHHH
Q 006246 384 LFFKMQREKMRPDRITFACVLSACAHAGMIDR 415 (654)
Q Consensus 384 l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 415 (654)
.+-.+.....+ ...+..|+...+..|..+.
T Consensus 960 aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 960 ALMVLSTTPLK--KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHSSSC--HHHHHHHHHHHHHHCCHHH
T ss_pred HHHhCCCHHHH--HHHHHHHHHHHHhCCChhh
Confidence 88777654333 3455666666666665543
No 255
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=81.26 E-value=14 Score=40.29 Aligned_cols=121 Identities=15% Similarity=0.049 Sum_probs=74.6
Q ss_pred HHHHHhcCC-HHHHHHHHHhcCCCCHh--H--HHHHHHHHHhcC-ChHHHHHHHHHHHhC------CCCCCcch------
Q 006246 237 ISGFARFGR-FEEARKLFNEMNDKDEI--T--WSAIIDGYTKDG-YYKEALEVFNEMQRD------KIKPRKFV------ 298 (654)
Q Consensus 237 i~~~~~~g~-~~~A~~~~~~~~~~~~~--~--~~~li~~~~~~g-~~~~A~~~~~~m~~~------g~~p~~~t------ 298 (654)
+..+...++ ++.|..+|+++...+.. . ...+|..+.+.+ +--+|.+++.+..+. ...+....
T Consensus 255 l~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~ 334 (754)
T 4gns_B 255 KSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMN 334 (754)
T ss_dssp HHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred HHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccC
Confidence 333344455 57788888887654332 1 222333333322 233455655554421 22222110
Q ss_pred H-HHHH----HHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcC
Q 006246 299 L-SCVL----AACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMK 358 (654)
Q Consensus 299 ~-~~ll----~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 358 (654)
+ ..+| .-|.+.|+++.|.++-++.+... +.+-.+|..|...|.+.|+++.|+-.++.++
T Consensus 335 ~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 335 CMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 0 1122 33567899999999999988875 5578899999999999999999999999886
No 256
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=80.38 E-value=10 Score=37.93 Aligned_cols=69 Identities=19% Similarity=0.145 Sum_probs=49.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH----HcCCCCCcch
Q 006246 366 NAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQ----MYGIDPEVEH 435 (654)
Q Consensus 366 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~----~~g~~p~~~~ 435 (654)
..++..+...|++++|+..+..+.... +-+...+..++.++.+.|+..+|.+.|+...+ ..|+.|...+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 345566777788888888777776653 34677888888888888888888888877654 3577777654
No 257
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=80.20 E-value=10 Score=32.37 Aligned_cols=123 Identities=11% Similarity=-0.011 Sum_probs=63.4
Q ss_pred HHHHHHHcCCHHHHHHHHhhcCC-----CCH-------HHHHHHHHHHHHcCChhHHHHHHHHHhhcC-CCCCHH-HHHH
Q 006246 337 LVDMYAKCGRLDMAWKVFEDMKM-----KEV-------FTWNAMIGGLAMHGRADDAIELFFKMQREK-MRPDRI-TFAC 402 (654)
Q Consensus 337 li~~y~~~g~~~~A~~~~~~m~~-----~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~-t~~~ 402 (654)
-+..+...|.++.|+-+.+.+.. +++ .+...+..++...|++..|...|++.++.. .-|... +...
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~ 105 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS 105 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 35556667777777766655432 221 244556667777777777777777764421 111111 1111
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhCCCCC-CHHHHHHHHH
Q 006246 403 VLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEP-NAAVWEALLG 473 (654)
Q Consensus 403 ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~ll~ 473 (654)
+-. ..... ......++.+.---+...|.+.|++++|+.+++.+|.+- ++.+-..|..
T Consensus 106 ~~~----~ss~p----------~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~Lak 163 (167)
T 3ffl_A 106 TGN----SASTP----------QSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLAN 163 (167)
T ss_dssp -------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHHHH
T ss_pred ccc----cCCCc----------ccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHHHH
Confidence 100 00000 001122333444457788889999999999999986432 4444444443
No 258
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=79.97 E-value=24 Score=32.76 Aligned_cols=124 Identities=14% Similarity=0.120 Sum_probs=78.8
Q ss_pred HHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCH
Q 006246 370 GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYL 449 (654)
Q Consensus 370 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~ 449 (654)
....+.|..++|++....-++.. +-|...-..++..+|-.|++++|.+-++...+. .|+...-..+..-+.++...
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~aE~~ 80 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQA 80 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHHHHH
Confidence 34567889999999888887763 336667777888999999999999999988763 55533222221222222111
Q ss_pred HHHHHHHHhC--C--CCCCHHHHHHHHHHHH--HhCChHHHHHHHHHHHhcCCCCC
Q 006246 450 AEAEEVISSM--P--MEPNAAVWEALLGACR--KHGEVEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 450 ~~A~~~~~~m--~--~~p~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~~ 499 (654)
.+ ++|..- | ......-...|+.+.. ..|+.+.|..+-.++++..|..+
T Consensus 81 R~--~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~ 134 (273)
T 1zbp_A 81 RK--DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG 134 (273)
T ss_dssp HH--HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred HH--HHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccC
Confidence 11 233321 2 1112223344555554 56999999999999999887765
No 259
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=79.03 E-value=49 Score=38.41 Aligned_cols=188 Identities=13% Similarity=0.091 Sum_probs=116.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCCC---------C--------
Q 006246 299 LSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK---------E-------- 361 (654)
Q Consensus 299 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---------~-------- 361 (654)
...++..+...+..+.+.++.... +.++...-.+..+|..+|++++|.+.|++.... .
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~ 889 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIA 889 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccc
Confidence 334555666677777666654332 334444456778899999999999999876421 0
Q ss_pred ---------HHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCH--H--HHHHHHHHHHccCCHHHHHHHHHHHHHHcC
Q 006246 362 ---------VFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDR--I--TFACVLSACAHAGMIDRGLQALTYMQQMYG 428 (654)
Q Consensus 362 ---------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~--t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g 428 (654)
..-|.-++..+.+.+.++.++++-+..++..-.-+. . .|..+..++...|++++|...+-.+...
T Consensus 890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-- 967 (1139)
T 4fhn_B 890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT-- 967 (1139)
T ss_dssp HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS--
T ss_pred ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH--
Confidence 113566778888999999999888877664322122 2 4778889999999999999888777652
Q ss_pred CCCCcchHHHHHHHHHHcCCHHH------------HHHHHHhC-----CCCCCHHHHHHHHHHHHHhCChHHH-HHHHHH
Q 006246 429 IDPEVEHYGCIVDLLGRAGYLAE------------AEEVISSM-----PMEPNAAVWEALLGACRKHGEVEFG-ERLGKI 490 (654)
Q Consensus 429 ~~p~~~~~~~li~~~~~~g~~~~------------A~~~~~~m-----~~~p~~~~~~~ll~~~~~~g~~~~a-~~~~~~ 490 (654)
.-.......||..++..|..++ ..+++... .....+.-|..|-.-...+||+..| .-+|++
T Consensus 968 -~~r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~ 1046 (1139)
T 4fhn_B 968 -PLKKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEK 1046 (1139)
T ss_dssp -SSCHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHH
Confidence 2234456667776676655443 33333221 0111122344455555566666544 555666
Q ss_pred HHhc
Q 006246 491 LLEM 494 (654)
Q Consensus 491 ~~~~ 494 (654)
+..+
T Consensus 1047 ~~RL 1050 (1139)
T 4fhn_B 1047 LSRY 1050 (1139)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6554
No 260
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=78.33 E-value=13 Score=30.37 Aligned_cols=64 Identities=14% Similarity=0.200 Sum_probs=52.1
Q ss_pred ChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHH
Q 006246 377 RADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDL 442 (654)
Q Consensus 377 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~ 442 (654)
+.-+..+-++.+....+-|+.......+.+|-+.+++..|.++|+-++.+ ..+...+|..+++-
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHHH
Confidence 34456666777777889999999999999999999999999999999885 44556678888753
No 261
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=78.13 E-value=36 Score=30.02 Aligned_cols=110 Identities=15% Similarity=0.081 Sum_probs=61.7
Q ss_pred CchhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 006246 329 VDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACA 408 (654)
Q Consensus 329 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 408 (654)
++..+-...+.++++.|..+....+.+.+..++...-...+.++.+.|.. ++...+.++.+ .+|...-...+.++.
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~ 168 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALG 168 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 45555556666666666654444444445556666666666667776664 35555555553 356666666666777
Q ss_pred ccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcC
Q 006246 409 HAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAG 447 (654)
Q Consensus 409 ~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g 447 (654)
+.+. .++...+..+.++ ++...-...+.++.+.+
T Consensus 169 ~~~~-~~~~~~L~~~l~d----~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 169 EIGG-ERVRAAMEKLAET----GTGFARKVAVNYLETHK 202 (211)
T ss_dssp HHCS-HHHHHHHHHHHHH----CCHHHHHHHHHHHHC--
T ss_pred HhCc-hhHHHHHHHHHhC----CCHHHHHHHHHHHHhcC
Confidence 7665 4455555555553 44444455555555443
No 262
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=78.06 E-value=35 Score=29.83 Aligned_cols=60 Identities=12% Similarity=0.084 Sum_probs=24.1
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q 006246 330 DAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQR 390 (654)
Q Consensus 330 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 390 (654)
+..+-...+.++++.|..+....+.+.+..++...-...+.++...|. .++...+.++.+
T Consensus 120 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l~ 179 (201)
T 3ltj_A 120 DWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 179 (201)
T ss_dssp SHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 333333444444444443322222223333444444444444444443 344444444443
No 263
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=77.89 E-value=27 Score=29.75 Aligned_cols=114 Identities=11% Similarity=0.078 Sum_probs=62.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC-----CCCH-------hHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCC-Ccch
Q 006246 233 YNAMISGFARFGRFEEARKLFNEMN-----DKDE-------ITWSAIIDGYTKDGYYKEALEVFNEMQRDK-IKP-RKFV 298 (654)
Q Consensus 233 ~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p-~~~t 298 (654)
+-.-+..+...|.++.|+-+.+.+. ++++ .+...+.+++...+++..|...|++.++.. .-+ +..+
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 4445666777788888777766643 1232 245666777788888888888888764421 111 1111
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC
Q 006246 299 LSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM 359 (654)
Q Consensus 299 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~ 359 (654)
...+-.--...+ ......+..+---+..+|.+.|++++|+.+++.++.
T Consensus 103 ~~~~~~~ss~p~-------------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 103 RPSTGNSASTPQ-------------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred cccccccCCCcc-------------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 111100000000 011223445555577888888888888888888765
No 264
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=75.46 E-value=68 Score=31.86 Aligned_cols=23 Identities=17% Similarity=0.078 Sum_probs=11.7
Q ss_pred HHHHHHHcCChhHHHHHHHHHhh
Q 006246 368 MIGGLAMHGRADDAIELFFKMQR 390 (654)
Q Consensus 368 li~~~~~~g~~~~A~~l~~~m~~ 390 (654)
++..|...|++.+|.+++.++.+
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~ 127 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLR 127 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Confidence 44445555555555555555444
No 265
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.39 E-value=78 Score=32.07 Aligned_cols=195 Identities=13% Similarity=0.089 Sum_probs=115.3
Q ss_pred CCHHHHHHHHHhcCC-----C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCcchHHHHHHHH----Hhc
Q 006246 244 GRFEEARKLFNEMND-----K----DEITWSAIIDGYTKDGYYKEALEVFNEMQRD-KIKPRKFVLSCVLAAC----ASL 309 (654)
Q Consensus 244 g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~----~~~ 309 (654)
|++++|.+.+-.+.+ . .......++..|...|+++...+.+..+... |..+ .....++..+ ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk--~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK--LSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH--HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhcC
Confidence 678888877755542 1 2345777889999999999998887766543 3222 2233344333 223
Q ss_pred CChhHHHHHHHHHHH------cC-CCC---chhHHHHHHHHHHHcCCHHHHHHHHhhcCC----C-----CHHHHHHHHH
Q 006246 310 GALDQGIWIHDHVKR------NS-ICV---DAVLGTALVDMYAKCGRLDMAWKVFEDMKM----K-----EVFTWNAMIG 370 (654)
Q Consensus 310 g~~~~a~~~~~~~~~------~~-~~~---~~~~~~~li~~y~~~g~~~~A~~~~~~m~~----~-----~~~~~~~li~ 370 (654)
...+.... ..... .| +-. ...+...|...|...|++.+|.+++..+.. . -+..+..-+.
T Consensus 108 ~~~d~~~~--~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~r 185 (445)
T 4b4t_P 108 KSLDLNTR--ISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 185 (445)
T ss_dssp CTTHHHHH--HHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred CchhHHHH--HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 33332111 11211 11 111 223446788999999999999999988753 1 1346777788
Q ss_pred HHHHcCChhHHHHHHHHHhh----cCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHH
Q 006246 371 GLAMHGRADDAIELFFKMQR----EKMRPDR--ITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLG 444 (654)
Q Consensus 371 ~~~~~g~~~~A~~l~~~m~~----~g~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~ 444 (654)
.|...+++..|..+++++.. ....|+. ..+...+..+.+.+++.+|.+ .|..+.+.+.
T Consensus 186 l~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~----------------~y~e~~~~~~ 249 (445)
T 4b4t_P 186 LSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQ----------------YLQEIYQTDA 249 (445)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHH----------------HHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHH----------------HHHHHHhccc
Confidence 89999999999999988743 2222221 133444444555566555422 2555666677
Q ss_pred HcCCHHHHHHHHHh
Q 006246 445 RAGYLAEAEEVISS 458 (654)
Q Consensus 445 ~~g~~~~A~~~~~~ 458 (654)
..++.......+..
T Consensus 250 ~~~d~~~~~~~L~~ 263 (445)
T 4b4t_P 250 IKSDEAKWKPVLSH 263 (445)
T ss_dssp HHSCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHH
Confidence 77776655544443
No 266
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=72.13 E-value=70 Score=30.54 Aligned_cols=180 Identities=11% Similarity=0.055 Sum_probs=100.0
Q ss_pred HHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHH----HH
Q 006246 210 LKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEV----FN 285 (654)
Q Consensus 210 ~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~ 285 (654)
...|++=+|.+. |.++..=|.+.+++++|.+++..- ...+.+.|+...|-++ .+
T Consensus 24 I~~G~yYEAhQ~-----------~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llve 81 (312)
T 2wpv_A 24 IKAGDYYEAHQT-----------LRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLE 81 (312)
T ss_dssp HHHTCHHHHHHH-----------HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhccChHHHHHH-----------HHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHH
Confidence 445555555555 445566666677777777664331 2234445555444443 34
Q ss_pred HHHhCCCCCCcchHHHHHHHHHhcCChh-HHHHHHHHHH----HcC--CCCchhHHHHHHHHHHHcCCHHHHHHHHhhcC
Q 006246 286 EMQRDKIKPRKFVLSCVLAACASLGALD-QGIWIHDHVK----RNS--ICVDAVLGTALVDMYAKCGRLDMAWKVFEDMK 358 (654)
Q Consensus 286 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~-~a~~~~~~~~----~~~--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 358 (654)
-..+.+++++......++..+.....-+ .=..+...++ +.| ...++.....+...|.+.|++.+|+.-|-.-.
T Consensus 82 v~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~ 161 (312)
T 2wpv_A 82 VYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT 161 (312)
T ss_dssp HHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Confidence 4445566777666666666655433211 1123333333 332 23477888899999999999999998776333
Q ss_pred CCCHHHHHHHHHHHHHc---CChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Q 006246 359 MKEVFTWNAMIGGLAMH---GRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQM 426 (654)
Q Consensus 359 ~~~~~~~~~li~~~~~~---g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 426 (654)
..+...+..++.-+... |...++ |...-..++ -|.-.|++..|..+|+...+.
T Consensus 162 ~~s~~~~a~~l~~w~~~~~~~~~~e~--------------dlf~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 162 HDSMIKYVDLLWDWLCQVDDIEDSTV--------------AEFFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCHHHH--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhcCCCCcchH--------------HHHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 23455555555444443 333222 111112222 344568888888888877654
No 267
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=72.00 E-value=61 Score=29.77 Aligned_cols=15 Identities=7% Similarity=0.160 Sum_probs=8.4
Q ss_pred CCChHHHHHHHhcCC
Q 006246 80 FSNFELALKVFNSVH 94 (654)
Q Consensus 80 ~g~~~~A~~~f~~~~ 94 (654)
.|+++....+++.-.
T Consensus 15 ~g~~~~v~~Ll~~g~ 29 (285)
T 1wdy_A 15 NEDVDLVQQLLEGGA 29 (285)
T ss_dssp TTCHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHcCC
Confidence 566666655555443
No 268
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=71.66 E-value=18 Score=27.89 Aligned_cols=63 Identities=16% Similarity=0.200 Sum_probs=45.3
Q ss_pred ChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHH
Q 006246 276 YYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVD 339 (654)
Q Consensus 276 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 339 (654)
+.-+..+-++.+....+.|++....+.|.||.+.+++..|..+++-++..- .....+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 344556667777777888888888888888888888888888888776543 222445665554
No 269
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=71.54 E-value=51 Score=28.69 Aligned_cols=81 Identities=19% Similarity=0.181 Sum_probs=36.4
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC
Q 006246 196 KSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDG 275 (654)
Q Consensus 196 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 275 (654)
.++...-...+.++.+.|..+..-.+.+.+..++..+-...+.++.+.++.+....+.+.+.++|...-...+.++.+.+
T Consensus 56 ~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 135 (201)
T 3ltj_A 56 DEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIG 135 (201)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 33433333444444444444333333333444555555555555555555443333444444444444444444444444
Q ss_pred C
Q 006246 276 Y 276 (654)
Q Consensus 276 ~ 276 (654)
.
T Consensus 136 ~ 136 (201)
T 3ltj_A 136 D 136 (201)
T ss_dssp C
T ss_pred C
Confidence 3
No 270
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=69.11 E-value=16 Score=36.48 Aligned_cols=68 Identities=12% Similarity=0.047 Sum_probs=42.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCchhH
Q 006246 265 SAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKR-----NSICVDAVL 333 (654)
Q Consensus 265 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~ 333 (654)
..++..+...|++++|+..+..+.... +.+...+..++.++...|+..+|.+.|....+ .|+.|...+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 345566667777777777766666542 33555666666677777777766666666543 366665443
No 271
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=68.74 E-value=74 Score=29.44 Aligned_cols=122 Identities=16% Similarity=0.050 Sum_probs=56.7
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcC--CHHHHHHHHHhcCCCCHhHHHHHHHHHHh
Q 006246 196 KSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFG--RFEEARKLFNEMNDKDEITWSAIIDGYTK 273 (654)
Q Consensus 196 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 273 (654)
.++...-...+.++.+.|+.+..-.+...+..++..+-...+.++.+.+ ..+-...+...+.+++...-...+.++.+
T Consensus 139 d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~ 218 (280)
T 1oyz_A 139 DKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSY 218 (280)
T ss_dssp CSCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 3343333344444444444322222333333455555555555555544 33333344444555666666666667777
Q ss_pred cCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006246 274 DGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKR 324 (654)
Q Consensus 274 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 324 (654)
.|+.. ++..+..+.+. |+ .-...+.++.+.|.. .+...+..+.+
T Consensus 219 ~~~~~-~~~~L~~~l~d---~~--vr~~a~~aL~~i~~~-~~~~~L~~~l~ 262 (280)
T 1oyz_A 219 RKDKR-VLSVLCDELKK---NT--VYDDIIEAAGELGDK-TLLPVLDTMLY 262 (280)
T ss_dssp TTCGG-GHHHHHHHHTS---SS--CCHHHHHHHHHHCCG-GGHHHHHHHHT
T ss_pred hCCHh-hHHHHHHHhcC---cc--HHHHHHHHHHhcCch-hhhHHHHHHHh
Confidence 77544 34433344332 22 223445666666664 44445554444
No 272
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=68.61 E-value=12 Score=35.76 Aligned_cols=61 Identities=15% Similarity=0.194 Sum_probs=47.3
Q ss_pred HHHhCCCCCC--HHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHhcC
Q 006246 455 VISSMPMEPN--AAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRKLMKERG 515 (654)
Q Consensus 455 ~~~~m~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~a~~~~~~m~~~g 515 (654)
+|...+++|. .-+..+-++.+.+++|+..|....++++++.|....-+.|.++...-.+.+
T Consensus 186 YFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~~~qArkil~~ce~~~ 248 (320)
T 3mkr_B 186 YFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPEVAQQTRKILSACEKNP 248 (320)
T ss_dssp HHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSC
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC
Confidence 4445566664 556788888999999999999999999999987656666777777666554
No 273
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=67.41 E-value=76 Score=29.07 Aligned_cols=83 Identities=10% Similarity=0.123 Sum_probs=39.4
Q ss_pred HHHHHHHhCCCchHHHHHHHHhHhCCCCCCcc----cHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChh--hHHHHHH
Q 006246 103 SVLRACLEHNEPWRVISLYSEMVGVDSKPNKF----TYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH--VKSSGIQ 176 (654)
Q Consensus 103 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~ 176 (654)
+.+...++.|+.+. ++.+.+.|..++.. -.+ .+...+..|+.+ +.+.+++.|..++.. ...+.+.
T Consensus 7 ~~L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~~g~t-~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~ 77 (285)
T 1wdy_A 7 HLLIKAVQNEDVDL----VQQLLEGGANVNFQEEEGGWT-PLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFL 77 (285)
T ss_dssp HHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTTCCC-HHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred hHHHHHHHcCCHHH----HHHHHHcCCCcccccCCCCCc-HHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHH
Confidence 34444566677543 34444555444432 122 333334455544 444455556554432 1223334
Q ss_pred HHHhcCCHHHHHHHHhcC
Q 006246 177 MYACFGCVNKARQILDDG 194 (654)
Q Consensus 177 ~y~~~g~~~~A~~~~~~~ 194 (654)
..+..|+.+-+..+++..
T Consensus 78 ~A~~~~~~~~v~~Ll~~g 95 (285)
T 1wdy_A 78 LAAIAGSVKLLKLFLSKG 95 (285)
T ss_dssp HHHHHTCHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHcC
Confidence 444566666666666654
No 274
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=66.23 E-value=25 Score=28.63 Aligned_cols=71 Identities=11% Similarity=-0.052 Sum_probs=45.9
Q ss_pred CCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC
Q 006246 393 MRPDRITFACVLSACAHAGM---IDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-PMEPN 464 (654)
Q Consensus 393 ~~p~~~t~~~ll~~~~~~g~---~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 464 (654)
-.|+..|--.+..++.++.. ..+|+.+++.+.+. +-.-..+..-.|.-++.|.|++++|.+..+.+ ..+|+
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 35566665566666666654 45678888777764 31112344555666788888888888888876 55665
No 275
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=65.21 E-value=1e+02 Score=29.72 Aligned_cols=167 Identities=9% Similarity=0.032 Sum_probs=89.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHH----HHHHhCCCCCCcchHHHHHHHHHh
Q 006246 233 YNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVF----NEMQRDKIKPRKFVLSCVLAACAS 308 (654)
Q Consensus 233 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~~~ 308 (654)
|.++..=|.+.+++++|.+++.. -...+.+.|+...|-++- +-+.+.++++|..+...++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 34455556666666666665432 122344445544443333 334445666666666666666554
Q ss_pred cCChhHH-HHHHHHH----HHcC--CCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChhHH
Q 006246 309 LGALDQG-IWIHDHV----KRNS--ICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDA 381 (654)
Q Consensus 309 ~g~~~~a-~~~~~~~----~~~~--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 381 (654)
...-+-. ..+...+ .+.| ..-|+.....+...|.+.+++.+|+.-|---..+....+..|+.-+...+...+
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e- 185 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT- 185 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG-
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc-
Confidence 4432111 2222222 2333 344777888899999999999999988853222223555555544443332111
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006246 382 IELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQ 425 (654)
Q Consensus 382 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 425 (654)
+|...-..++ -|.-.+++..|...++...+
T Consensus 186 -------------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 -------------APLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -------------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 1222222333 34556788888887776665
No 276
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=64.87 E-value=42 Score=27.73 Aligned_cols=70 Identities=11% Similarity=-0.041 Sum_probs=42.8
Q ss_pred CCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC
Q 006246 394 RPDRITFACVLSACAHAGM---IDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-PMEPN 464 (654)
Q Consensus 394 ~p~~~t~~~ll~~~~~~g~---~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 464 (654)
.|+..|-..+..++.++.. ..+++.+++.+.+. +-.-..+..-.|.-++.|.|++++|.++.+.+ ..+|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 4566665566666666654 45677777777664 21112333444556777888888888887766 45564
No 277
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=64.41 E-value=1.5e+02 Score=31.45 Aligned_cols=197 Identities=11% Similarity=-0.038 Sum_probs=98.9
Q ss_pred ChHHHHHHHHHHHhCCCCCCcchHHHHHHHH----HhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHH
Q 006246 276 YYKEALEVFNEMQRDKIKPRKFVLSCVLAAC----ASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAW 351 (654)
Q Consensus 276 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 351 (654)
+.+.|..+|....... ..+......+-... ...+...++...+....... .+.....-.+..-.+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence 6677777777765433 22222222222222 22332344455555443332 22222333444445678899998
Q ss_pred HHHhhcCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcC
Q 006246 352 KVFEDMKMKE---VFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYG 428 (654)
Q Consensus 352 ~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g 428 (654)
..|+.|.... ....-=+..++...|+.++|..+|+++.+. .+|..++.+ .+.|..-. + ....
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~------~~fYg~lAa-~~Lg~~~~----~----~~~~ 370 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ------RGFYPMVAA-QRIGEEYE----L----KIDK 370 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS------CSHHHHHHH-HHTTCCCC----C----CCCC
T ss_pred HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC------CChHHHHHH-HHcCCCCC----C----CCCC
Confidence 8888887632 222223445667788888888888888642 144444422 22221000 0 0000
Q ss_pred CCCC-cc-----hHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChHHHHHHHHH
Q 006246 429 IDPE-VE-----HYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKI 490 (654)
Q Consensus 429 ~~p~-~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 490 (654)
..+. .. .--.-+..+...|...+|...+.......+......+.......|..+.++....+
T Consensus 371 ~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~ 438 (618)
T 1qsa_A 371 APQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIA 438 (618)
T ss_dssp CCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 0010 00 01122445667888888887776652223434344455555667777777665543
No 278
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=56.66 E-value=1.2e+02 Score=28.23 Aligned_cols=11 Identities=0% Similarity=-0.176 Sum_probs=5.4
Q ss_pred CChHHHHHHHh
Q 006246 81 SNFELALKVFN 91 (654)
Q Consensus 81 g~~~~A~~~f~ 91 (654)
.+..+..+++.
T Consensus 10 ~~~~~v~~lL~ 20 (285)
T 3kea_A 10 WKSKQLKSFLS 20 (285)
T ss_dssp CCHHHHHHHHH
T ss_pred cCHHHHHHHHH
Confidence 34455555553
No 279
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.99 E-value=97 Score=31.15 Aligned_cols=57 Identities=16% Similarity=-0.034 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhcCCC------CHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q 006246 333 LGTALVDMYAKCGRLDMAWKVFEDMKMK------EVFTWNAMIGGLAMHGRADDAIELFFKMQ 389 (654)
Q Consensus 333 ~~~~li~~y~~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 389 (654)
+...+.+.|.++|+++.|.+.|.++... -+..+-..+..+...+++..+...+.+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3445666777777777777777666531 23345555666666666666666666653
No 280
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=55.59 E-value=1.1e+02 Score=27.09 Aligned_cols=148 Identities=10% Similarity=0.006 Sum_probs=74.3
Q ss_pred hhcCCCChHHHHHHHHHHHHhCCCCch---hHHHHHHHhcccccCCChHHHHHHHhcCCCCC---cchHHHHHHHHHhCC
Q 006246 39 NTKCHTSWQHLKQAHAVILKSGHFQDH---YVSGTLVKCHANSRFSNFELALKVFNSVHKPN---VFVWNSVLRACLEHN 112 (654)
Q Consensus 39 ~~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~Li~~y~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g 112 (654)
.++..|+.+..+.+.+.+.+.|..++. .-.+. +...+. .|+.+-+..+++.-..++ ..-++.+. ..+..|
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~-L~~A~~--~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~-~A~~~~ 90 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTP-LHLAVI--TTLPSVVRLLVTAGASPMALDRHGQTAAH-LACEHR 90 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCH-HHHHHH--TTCHHHHHHHHHTTCCTTCCCTTSCCHHH-HHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCH-HHHHHH--cCCHHHHHHHHHcCCCccccCCCCCCHHH-HHHHcC
Confidence 445568888888888877777655442 22233 344455 688887777777654333 22233333 334566
Q ss_pred CchHHHHHHHHhHhCCCCC---CcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChh---hHHHHHHHHHhcCCHHH
Q 006246 113 EPWRVISLYSEMVGVDSKP---NKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH---VKSSGIQMYACFGCVNK 186 (654)
Q Consensus 113 ~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~---~~~~li~~y~~~g~~~~ 186 (654)
+.+-+..+++.....++.+ |..-.+.+.. .+..|+. ++.+.+++.|..++.. .....+...++.|+.+-
T Consensus 91 ~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~-A~~~~~~----~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~ 165 (241)
T 1k1a_A 91 SPTCLRALLDSAAPGTLDLEARNYDGLTALHV-AVNTECQ----ETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSM 165 (241)
T ss_dssp CHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHH-HHHHTCH----HHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHcCCCccccccccCcCCCcHHHH-HHHcCCH----HHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHH
Confidence 6655544444433211122 2222222222 2333443 3444555556554432 12333444455666666
Q ss_pred HHHHHhcCC
Q 006246 187 ARQILDDGS 195 (654)
Q Consensus 187 A~~~~~~~~ 195 (654)
+..+++...
T Consensus 166 v~~Ll~~g~ 174 (241)
T 1k1a_A 166 VQLLLQHGA 174 (241)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHcCC
Confidence 666666543
No 281
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=54.29 E-value=71 Score=26.09 Aligned_cols=61 Identities=16% Similarity=0.234 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHH
Q 006246 278 KEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVD 339 (654)
Q Consensus 278 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 339 (654)
-+..+-++.+...++.|+.......|.+|.+.+++..|..+++-++..- .+...+|..+++
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 3455566677777888999999999999999999999999888877543 233556666554
No 282
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=52.87 E-value=4.4 Score=24.81 Aligned_cols=13 Identities=31% Similarity=1.017 Sum_probs=9.8
Q ss_pred ccc-cCccccCCCC
Q 006246 641 HHF-RNGKCSCNDF 653 (654)
Q Consensus 641 h~f-~~g~csc~~~ 653 (654)
|.. ++|.||||-|
T Consensus 16 HRL~~~~~C~CG~y 29 (42)
T 2l0z_A 16 HRLNSLGGCRCGKY 29 (42)
T ss_dssp SCCCTTSSBTTTTB
T ss_pred ceecCCceeccccc
Confidence 444 6899999976
No 283
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=52.80 E-value=62 Score=26.17 Aligned_cols=62 Identities=16% Similarity=0.325 Sum_probs=36.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCC---HhHHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCCC
Q 006246 233 YNAMISGFARFGRFEEARKLFNEMNDKD---EITWSAIIDGYTKDGY--YKEALEVFNEMQRDKIKP 294 (654)
Q Consensus 233 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p 294 (654)
.+.++.-|...|+.++|.+.++++..|. .+....+..++-+.+. .+.+..++..+...|+-+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 3456666777777777777777776552 2334444445554432 345666777777666444
No 284
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=52.78 E-value=1.8e+02 Score=28.77 Aligned_cols=48 Identities=15% Similarity=0.131 Sum_probs=24.2
Q ss_pred hcCCCChHHHHHHHHHHHHhCCCCch---hHHHHHHHhcccccCCChHHHHHHHhcCC
Q 006246 40 TKCHTSWQHLKQAHAVILKSGHFQDH---YVSGTLVKCHANSRFSNFELALKVFNSVH 94 (654)
Q Consensus 40 ~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~Li~~y~~~~~g~~~~A~~~f~~~~ 94 (654)
.+..|+++..+. +++.|..++. ...+. +...++ .|+.+-+..+++.-.
T Consensus 21 Aa~~g~~~~v~~----Ll~~g~~~~~~~~~~~t~-L~~A~~--~g~~~~v~~Ll~~g~ 71 (437)
T 1n11_A 21 ASFMGHLPIVKN----LLQRGASPNVSNVKVETP-LHMAAR--AGHTEVAKYLLQNKA 71 (437)
T ss_dssp HHHHTCHHHHHH----HHHTTCCSCCSSSCCCCH-HHHHHH--HTCHHHHHHHHHHTC
T ss_pred HHHCCCHHHHHH----HHHcCCCCCCCCCCCCCH-HHHHHH--cCCHHHHHHHHhCCC
Confidence 344566554443 4445654432 22233 333344 577777777776544
No 285
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=49.34 E-value=1.9e+02 Score=28.06 Aligned_cols=62 Identities=13% Similarity=0.216 Sum_probs=37.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhcCCCC---HHHHHHHHHHHHHcCC--hhHHHHHHHHHhhcCCCC
Q 006246 334 GTALVDMYAKCGRLDMAWKVFEDMKMKE---VFTWNAMIGGLAMHGR--ADDAIELFFKMQREKMRP 395 (654)
Q Consensus 334 ~~~li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p 395 (654)
.+.++.-|...|+.++|.+.++++..|. .+...++..++-+.++ .+...+++..+...|+-+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls 286 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 286 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCC
Confidence 3567777777888888888888877652 3344444445444332 344666666666665443
No 286
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=49.29 E-value=1.3e+02 Score=26.52 Aligned_cols=22 Identities=9% Similarity=-0.097 Sum_probs=9.9
Q ss_pred HhCCCchHHHHHHHHhHhCCCC
Q 006246 109 LEHNEPWRVISLYSEMVGVDSK 130 (654)
Q Consensus 109 ~~~g~~~~A~~~~~~m~~~g~~ 130 (654)
++.|+.+....+++.+.+.|..
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~~~~ 38 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQGGRE 38 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCC
T ss_pred HHcCCHHHHHHHHHHHHhcCCC
Confidence 3445554444444444444433
No 287
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=48.45 E-value=65 Score=26.02 Aligned_cols=62 Identities=13% Similarity=0.216 Sum_probs=43.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHHcCC--hhHHHHHHHHHhhcCCCC
Q 006246 334 GTALVDMYAKCGRLDMAWKVFEDMKMK---EVFTWNAMIGGLAMHGR--ADDAIELFFKMQREKMRP 395 (654)
Q Consensus 334 ~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p 395 (654)
.+.++.-|...|+.++|.+.++++..| ..+....+..++-+.+. .+.+..++..+...|+-+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 356788888899999999999998766 23445555556555432 356777888887766544
No 288
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=47.81 E-value=37 Score=31.49 Aligned_cols=51 Identities=16% Similarity=0.233 Sum_probs=25.4
Q ss_pred HHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC
Q 006246 407 CAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459 (654)
Q Consensus 407 ~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (654)
..+.|.++++++....-.+ .-+-|...-..|++.|+-.|+++.|.+-++..
T Consensus 7 ll~~g~L~~al~~~~~~VR--~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~ 57 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQS 57 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3345555555555555444 22334444455555555555555555544433
No 289
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=46.70 E-value=1.2e+02 Score=26.79 Aligned_cols=21 Identities=10% Similarity=0.110 Sum_probs=10.2
Q ss_pred HHHHHHhcCCHHHHHHHHhcC
Q 006246 174 GIQMYACFGCVNKARQILDDG 194 (654)
Q Consensus 174 li~~y~~~g~~~~A~~~~~~~ 194 (654)
.+...++.|+.+-+..+++..
T Consensus 45 ~L~~A~~~~~~~~v~~Ll~~~ 65 (240)
T 3eu9_A 45 LLHWAAINNRIDLVKYYISKG 65 (240)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHhCCHHHHHHHHHcC
Confidence 334444555555555555443
No 290
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=45.68 E-value=1.8e+02 Score=26.64 Aligned_cols=81 Identities=7% Similarity=-0.102 Sum_probs=34.0
Q ss_pred CCchhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 006246 328 CVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHG-RADDAIELFFKMQREKMRPDRITFACVLSA 406 (654)
Q Consensus 328 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 406 (654)
.++..+-...+.++++.|..+..-.+.+.+..++...-...+.++...| ....+...+.++.+ .+|...-...+.+
T Consensus 139 d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A~~a 215 (280)
T 1oyz_A 139 DKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQ---DKNEEVRIEAIIG 215 (280)
T ss_dssp CSCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTT---CSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhc---CCCHHHHHHHHHH
Confidence 3455555555555655555332223333333444443333444444443 22344444444443 2344444444444
Q ss_pred HHccC
Q 006246 407 CAHAG 411 (654)
Q Consensus 407 ~~~~g 411 (654)
+.+.|
T Consensus 216 L~~~~ 220 (280)
T 1oyz_A 216 LSYRK 220 (280)
T ss_dssp HHHTT
T ss_pred HHHhC
Confidence 44444
No 291
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=45.49 E-value=2.2e+02 Score=27.64 Aligned_cols=65 Identities=15% Similarity=0.287 Sum_probs=44.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCC---HhHHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCCCCcc
Q 006246 233 YNAMISGFARFGRFEEARKLFNEMNDKD---EITWSAIIDGYTKDGY--YKEALEVFNEMQRDKIKPRKF 297 (654)
Q Consensus 233 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~ 297 (654)
.+.++.-|...|+.++|.+.++++..|. .+....+..++-+.++ .+...+++..+...|+-+...
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q 289 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 289 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHH
Confidence 4778888888899999999999988763 2344455555554433 345777888887777554433
No 292
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=44.15 E-value=1.5e+02 Score=27.51 Aligned_cols=106 Identities=10% Similarity=-0.027 Sum_probs=49.3
Q ss_pred CCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcc---cHHHHHHHHhccCCcHHHHHHH
Q 006246 80 FSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKF---TYPTVFKACSITEADKEGVQVH 156 (654)
Q Consensus 80 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~~~~~~~~~~~a~~~~ 156 (654)
.|+.+-+..+++.-..++...-.+.+...+..|+.+-+ +.+.+.|..++.. -.+.+.. .+..|+.+-+
T Consensus 41 ~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~ga~~~~~d~~g~t~L~~-A~~~g~~~~v---- 111 (285)
T 3kea_A 41 DNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIV----KILLFSGLDDSQFDDKGNTALYY-AVDSGNMQTV---- 111 (285)
T ss_dssp TTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHH----HHHHHTTCCTTCCCTTSCCHHHH-HHHTTCHHHH----
T ss_pred cCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHHCCCCCCCcCCCCCcHHHH-HHHcCCHHHH----
Confidence 67888877777764433322112233334455665433 3334445544432 2223332 3344554433
Q ss_pred HHHHHhCCCCChh---hHHHHHHHHHhcCCHHHHHHHHhcC
Q 006246 157 AHVVKNGLCGDVH---VKSSGIQMYACFGCVNKARQILDDG 194 (654)
Q Consensus 157 ~~~~~~g~~~~~~---~~~~li~~y~~~g~~~~A~~~~~~~ 194 (654)
+.+++.|..++.. -+.+.+...+..|+.+-+.-+++..
T Consensus 112 ~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g 152 (285)
T 3kea_A 112 KLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEI 152 (285)
T ss_dssp HHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTS
T ss_pred HHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence 3344445443322 1133444445566666666666554
No 293
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=43.24 E-value=61 Score=27.14 Aligned_cols=62 Identities=16% Similarity=0.325 Sum_probs=35.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCC---HhHHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCCC
Q 006246 233 YNAMISGFARFGRFEEARKLFNEMNDKD---EITWSAIIDGYTKDGY--YKEALEVFNEMQRDKIKP 294 (654)
Q Consensus 233 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p 294 (654)
.+.++.-|...|+.++|.+.++++..|. .+....+..++-+.++ .+.+..++..+...|+-+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 3456666767777777777777776552 2234444444544322 345666777776665443
No 294
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=41.54 E-value=85 Score=31.58 Aligned_cols=96 Identities=10% Similarity=-0.080 Sum_probs=61.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHHc-CCCCCcchHHHHHHHHHHcCCHHHHHHHHHhCC----CCCCHHHHH----
Q 006246 399 TFACVLSACAHAGMIDRGLQALTYMQQMY-GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMP----MEPNAAVWE---- 469 (654)
Q Consensus 399 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~~~~~~---- 469 (654)
+...+..-+.+.|+++.|.+.+.++.... +...-...+-.++.++...+++..|...+++.. ..+|....+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 56677788888888888888888887742 122224566777778888888888888887761 223332222
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHhc
Q 006246 470 ALLGACRKHGEVEFGERLGKILLEM 494 (654)
Q Consensus 470 ~ll~~~~~~g~~~~a~~~~~~~~~~ 494 (654)
.-+-.+...+++..|-+.|-.++..
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 2222234557777777777666554
No 295
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=39.90 E-value=61 Score=27.15 Aligned_cols=62 Identities=13% Similarity=0.216 Sum_probs=42.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHHcCC--hhHHHHHHHHHhhcCCCC
Q 006246 334 GTALVDMYAKCGRLDMAWKVFEDMKMK---EVFTWNAMIGGLAMHGR--ADDAIELFFKMQREKMRP 395 (654)
Q Consensus 334 ~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p 395 (654)
.+.++.-|...|+.++|.+.++++..| ..+....+..++-+.++ .+.+..++..+...|+-+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 356788888889999999999998765 23445555555555332 345677777777666443
No 296
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=39.01 E-value=1.4e+02 Score=26.31 Aligned_cols=49 Identities=6% Similarity=-0.053 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHHHcCCCCc-hhHHHHHHHHHHHcCCHHHHHHHHhhcCCC
Q 006246 312 LDQGIWIHDHVKRNSICVD-AVLGTALVDMYAKCGRLDMAWKVFEDMKMK 360 (654)
Q Consensus 312 ~~~a~~~~~~~~~~~~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~m~~~ 360 (654)
.....++|..|...|+-.. +..|......+...|++++|.++|+.-.+.
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN 144 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 5566667776666665432 445556666666677777777776655543
No 297
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=38.78 E-value=41 Score=30.77 Aligned_cols=52 Identities=10% Similarity=-0.051 Sum_probs=26.0
Q ss_pred HHhCCCchHHHHHHHHhHhCCCCCCccc-------HHHHHHHHh--ccCCcHHHHHHHHHH
Q 006246 108 CLEHNEPWRVISLYSEMVGVDSKPNKFT-------YPTVFKACS--ITEADKEGVQVHAHV 159 (654)
Q Consensus 108 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t-------~~~ll~~~~--~~~~~~~a~~~~~~~ 159 (654)
.++.|+.+....+++.+.+.|..++... .+.|..|+. +.|+.+-++.+++.-
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 3455666666666666665555554322 233333321 445555555554443
No 298
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.81 E-value=1.1e+02 Score=31.47 Aligned_cols=60 Identities=15% Similarity=0.110 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCH-------HHH-HHHHHHHHHcCChhHHHHHHHHHhh
Q 006246 331 AVLGTALVDMYAKCGRLDMAWKVFEDMKMKEV-------FTW-NAMIGGLAMHGRADDAIELFFKMQR 390 (654)
Q Consensus 331 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-------~~~-~~li~~~~~~g~~~~A~~l~~~m~~ 390 (654)
..++|.++..|...+.++.|..+..+..-|.. ..| -.+...+.-.+++.+|.+.|.....
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34555555666666666666666655543311 111 1123334445555555555555544
No 299
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=36.10 E-value=2.2e+02 Score=24.86 Aligned_cols=15 Identities=7% Similarity=-0.031 Sum_probs=8.0
Q ss_pred CCChHHHHHHHhcCC
Q 006246 80 FSNFELALKVFNSVH 94 (654)
Q Consensus 80 ~g~~~~A~~~f~~~~ 94 (654)
.|+.+-+..+++.-.
T Consensus 52 ~~~~~~v~~Ll~~~~ 66 (240)
T 3eu9_A 52 NNRIDLVKYYISKGA 66 (240)
T ss_dssp TTCHHHHHHHHHTTC
T ss_pred hCCHHHHHHHHHcCC
Confidence 455555555555443
No 300
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.24 E-value=1.2e+02 Score=23.90 Aligned_cols=37 Identities=19% Similarity=0.215 Sum_probs=27.0
Q ss_pred hCChHHHHHHHHHHHh-------cCCC-----CCCchHHHHHHHHHHhc
Q 006246 478 HGEVEFGERLGKILLE-------MEPQ-----NRRCDDVAKMRKLMKER 514 (654)
Q Consensus 478 ~g~~~~a~~~~~~~~~-------~~p~-----~~~~~~a~~~~~~m~~~ 514 (654)
.|+.+.|+.+|++-++ +..+ ...|+.|.++..+|++.
T Consensus 35 ~g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq~KM~~n 83 (116)
T 2dl1_A 35 LGQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQKMKET 83 (116)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHH
Confidence 4777777777776655 3332 33999999999999863
No 301
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=34.81 E-value=1.6e+02 Score=26.59 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=15.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 006246 267 IIDGYTKDGYYKEALEVFNEMQR 289 (654)
Q Consensus 267 li~~~~~~g~~~~A~~~~~~m~~ 289 (654)
-++.+....++++|++++++..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 45666777777877777776643
No 302
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=32.91 E-value=2.5e+02 Score=24.49 Aligned_cols=13 Identities=0% Similarity=-0.118 Sum_probs=7.3
Q ss_pred CCChHHHHHHHhc
Q 006246 80 FSNFELALKVFNS 92 (654)
Q Consensus 80 ~g~~~~A~~~f~~ 92 (654)
.|+++....+++.
T Consensus 16 ~g~~~~v~~ll~~ 28 (231)
T 3aji_A 16 SGKLDELKERILA 28 (231)
T ss_dssp HTCHHHHHHHHHH
T ss_pred hCCHHHHHHHHHh
Confidence 4566666555544
No 303
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=32.08 E-value=1.6e+02 Score=25.94 Aligned_cols=138 Identities=9% Similarity=0.006 Sum_probs=62.5
Q ss_pred hcCCCChHHHHHHHHHHHHhCCCCch---hHHHHHHHhcccccCCChHHHHHHHhcCCCC---CcchHHHHHHHHHhCCC
Q 006246 40 TKCHTSWQHLKQAHAVILKSGHFQDH---YVSGTLVKCHANSRFSNFELALKVFNSVHKP---NVFVWNSVLRACLEHNE 113 (654)
Q Consensus 40 ~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~Li~~y~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~ 113 (654)
++..|+.+. ...+++.|..++. .-.+. +...++ .|+.+-+..+++.-..+ +..-++.+.. .+..|+
T Consensus 18 A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t~-L~~A~~--~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~-A~~~~~ 89 (237)
T 3b7b_A 18 AAEAGHVDI----CHMLVQAGANIDTCSEDQRTP-LMEAAE--NNHLEAVKYLIKAGALVDPKDAEGSTCLHL-AAKKGH 89 (237)
T ss_dssp HHHHTCHHH----HHHHHHTTCCTTCCCTTCCCH-HHHHHH--TTCHHHHHHHHTTTCCCCCCCTTSCCHHHH-HHHTTC
T ss_pred HHHcCcHHH----HHHHHHcCCCcCccCCCCCCH-HHHHHH--hCCHHHHHHHHhCCCCCCCCCCCCCcHHHH-HHHcCC
Confidence 344566553 4455566654432 22333 334455 68888888777764432 2222333333 334555
Q ss_pred chHHHHHHHHhHhCC-CCCC---cccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChh--hHHHHHHHHHhcCCHHHH
Q 006246 114 PWRVISLYSEMVGVD-SKPN---KFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH--VKSSGIQMYACFGCVNKA 187 (654)
Q Consensus 114 ~~~A~~~~~~m~~~g-~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A 187 (654)
.+ +++.+.+.| ..++ ..-.+.+. ..+..++.+ +.+.+++.|..++.. .....+...+..|..+-+
T Consensus 90 ~~----~~~~Ll~~~~~~~~~~~~~g~t~L~-~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~ 160 (237)
T 3b7b_A 90 YE----VVQYLLSNGQMDVNCQDDGGWTPMI-WATEYKHVD----LVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIA 160 (237)
T ss_dssp HH----HHHHHHTTTCCCTTCCCTTSCCHHH-HHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHH
T ss_pred HH----HHHHHHhCCCCCcccCCCCCCCHHH-HHHHcCCHH----HHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHH
Confidence 43 334444444 2222 22222232 233344443 444455556544322 112233333445555555
Q ss_pred HHHHhcC
Q 006246 188 RQILDDG 194 (654)
Q Consensus 188 ~~~~~~~ 194 (654)
.-+++..
T Consensus 161 ~~Ll~~g 167 (237)
T 3b7b_A 161 EILLAAK 167 (237)
T ss_dssp HHHHTTT
T ss_pred HHHHHcC
Confidence 5555544
No 304
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=31.78 E-value=29 Score=25.92 Aligned_cols=36 Identities=19% Similarity=0.288 Sum_probs=24.3
Q ss_pred CChHHHHHHHHHHHh-------c--CCCCCCchHHHHHHHHHHhc
Q 006246 479 GEVEFGERLGKILLE-------M--EPQNRRCDDVAKMRKLMKER 514 (654)
Q Consensus 479 g~~~~a~~~~~~~~~-------~--~p~~~~~~~a~~~~~~m~~~ 514 (654)
|+.++|+.+|++-++ + ....+.|+.|.++..+|++.
T Consensus 33 G~k~~A~~~YkkGi~eL~~Gi~V~~~g~G~~we~Ar~LQ~KM~~n 77 (89)
T 3eab_A 33 GQKEQAVEWYKKGIEELEKGIAVIVTGQGEQCERARRLQAKMMTN 77 (89)
T ss_dssp SSGGGSHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhcCCccCCCChhHHHHHHHHHHHHHH
Confidence 666666666666554 2 22333899999999999763
No 305
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=31.63 E-value=56 Score=29.69 Aligned_cols=54 Identities=7% Similarity=-0.077 Sum_probs=27.3
Q ss_pred HHHhCCCchHHHHHHHHhHhCCCCCCc-------ccHHHHHHHHhc--cCCcHHHHHHHHHHH
Q 006246 107 ACLEHNEPWRVISLYSEMVGVDSKPNK-------FTYPTVFKACSI--TEADKEGVQVHAHVV 160 (654)
Q Consensus 107 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~~~~~--~~~~~~a~~~~~~~~ 160 (654)
..++.|+.+....+++.+...|..++. .-.+.|..|+.. .|+.+-++.+++.-.
T Consensus 8 ~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 70 (256)
T 2etb_A 8 SVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDK 70 (256)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCC
Confidence 345567777666666666666654443 223333333321 255555555554433
No 306
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=31.49 E-value=12 Score=26.22 Aligned_cols=23 Identities=22% Similarity=0.482 Sum_probs=18.5
Q ss_pred ceEEEecCCccccccCccccCCC
Q 006246 630 RDIIVRDRVRYHHFRNGKCSCND 652 (654)
Q Consensus 630 ~~~~~~d~~~~h~f~~g~csc~~ 652 (654)
..|=+.|.+..|+|+|||-+-+|
T Consensus 8 k~v~LkDGstvyiFKDGKMamEd 30 (74)
T 2k0q_A 8 KTYDLQDGSKVHVFKDGKMGMEN 30 (74)
T ss_dssp EEEEBTTSCEEEEETTSCEEEEC
T ss_pred eeEecCCCcEEEEEcCCceehhh
Confidence 45678899999999999976443
No 307
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=30.29 E-value=1.1e+02 Score=27.63 Aligned_cols=23 Identities=4% Similarity=-0.081 Sum_probs=16.4
Q ss_pred HHHHHHhCCCchHHHHHHHHhHh
Q 006246 104 VLRACLEHNEPWRVISLYSEMVG 126 (654)
Q Consensus 104 li~~~~~~g~~~~A~~~~~~m~~ 126 (654)
-+..+....++++|++++++..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 35677777888888888776643
No 308
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=29.23 E-value=21 Score=29.05 Aligned_cols=41 Identities=17% Similarity=0.325 Sum_probs=28.3
Q ss_pred CCcEEEe----cccccCcchhhHHHhHhhhcCceEEEecCCccccccCccccC
Q 006246 602 GATIRVI----KNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSC 650 (654)
Q Consensus 602 ~~~~~~~----~~l~~c~~~h~~~~~~s~~~~~~~~~~d~~~~h~f~~g~csc 650 (654)
...+||+ ++.++|-+| .+...-..-.++-+||+|+++.|-.
T Consensus 44 ~~~~Riv~~~~~~~~vi~n~--------~i~~~~~y~~~~~~Fh~w~~~~~~~ 88 (130)
T 1qc6_A 44 SSTFRVVGVKLQDQQVVINY--------SIVKGLKYNQATPTFHQWRDARQVY 88 (130)
T ss_dssp TTEEEEEEECTTTCCEEEEE--------ECCTTCEEEEEETTEEEEECSSCEE
T ss_pred CcEEEEEEEeCCCCeEEEee--------EEeCCcEEeccCCeeEEEEcCCEEE
Confidence 4556777 357777777 3444444557889999999998743
No 309
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=28.99 E-value=55 Score=24.87 Aligned_cols=38 Identities=5% Similarity=-0.041 Sum_probs=31.1
Q ss_pred CChHHHHHHHhcCCCCCcchHHHHHHHHHhCCCchHHH
Q 006246 81 SNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVI 118 (654)
Q Consensus 81 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 118 (654)
.+.+.|+++++.++++...+|..++.++...|+..-|-
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46889999999999988899999999997767655443
No 310
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=28.89 E-value=3e+02 Score=24.14 Aligned_cols=38 Identities=11% Similarity=0.141 Sum_probs=30.9
Q ss_pred HcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCC
Q 006246 374 MHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGM 412 (654)
Q Consensus 374 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 412 (654)
+..+.+.|+-++-+|++.| .|..+.-..++.+....|.
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGl 63 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGL 63 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGG
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccC
Confidence 4578999999999999999 8877777777777777664
No 311
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=28.77 E-value=83 Score=23.86 Aligned_cols=36 Identities=19% Similarity=0.256 Sum_probs=22.8
Q ss_pred CHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHH
Q 006246 245 RFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEA 280 (654)
Q Consensus 245 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 280 (654)
..+.|.++++.++.+...+|..++.++...|+..-|
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 466666666666666666666666666655554444
No 312
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=28.22 E-value=2.2e+02 Score=23.67 Aligned_cols=10 Identities=10% Similarity=0.192 Sum_probs=3.8
Q ss_pred HHHHHHHHhC
Q 006246 281 LEVFNEMQRD 290 (654)
Q Consensus 281 ~~~~~~m~~~ 290 (654)
.++|..|...
T Consensus 85 ~~if~~L~~~ 94 (152)
T 4a1g_A 85 HQFFEFLYNH 94 (152)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHC
Confidence 3333333333
No 313
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=28.03 E-value=1.5e+02 Score=24.27 Aligned_cols=62 Identities=6% Similarity=-0.001 Sum_probs=33.4
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHH
Q 006246 387 KMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLA 450 (654)
Q Consensus 387 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~ 450 (654)
.+.+.|++++..-. .++..+...+..-.|.++++.+.+. +...+..|...-++.+...|-+.
T Consensus 12 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 12 TLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGK-FPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGG-CTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCChhhHHHHHHHHHHCCCEE
Confidence 34556666555433 2333444444445566777777654 33344444445557777777653
No 314
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=27.73 E-value=2.5e+02 Score=23.73 Aligned_cols=179 Identities=8% Similarity=0.059 Sum_probs=0.0
Q ss_pred HHHHHhcCCHHHHHHHHHhcC----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchH--HHHHHHHHhcC
Q 006246 237 ISGFARFGRFEEARKLFNEMN----DKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVL--SCVLAACASLG 310 (654)
Q Consensus 237 i~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~~ll~~~~~~g 310 (654)
+...+..|+.+....++..-. ..|...++.+..+..... .++++.+.+.|..++.... .+.+...+..|
T Consensus 9 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~-----~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 83 (201)
T 3hra_A 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNND-----IEIAKALIDRGADINLQNSISDSPYLYAGAQG 83 (201)
T ss_dssp HHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTC-----HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCC-----HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Q ss_pred ChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhc-CC---CCHHHHHHHHHHHHHcCChhHHHHHHH
Q 006246 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDM-KM---KEVFTWNAMIGGLAMHGRADDAIELFF 386 (654)
Q Consensus 311 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m-~~---~~~~~~~~li~~~~~~g~~~~A~~l~~ 386 (654)
+.+-+..+++. ....+........+.+...++.|+.+-+..+++.- .. +|..-++.+..+.........-.++.+
T Consensus 84 ~~~~~~~Ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~ 162 (201)
T 3hra_A 84 RTEILAYMLKH-ATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK 162 (201)
T ss_dssp CHHHHHHHHHH-SCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHH
T ss_pred CHHHHHHHHhc-cCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHH
Q ss_pred HHhhcCCCCCHHHHH--HHHHHHHccCCHHHHHHHHH
Q 006246 387 KMQREKMRPDRITFA--CVLSACAHAGMIDRGLQALT 421 (654)
Q Consensus 387 ~m~~~g~~p~~~t~~--~ll~~~~~~g~~~~a~~~~~ 421 (654)
.+.+.|..|+..... +.+......|..+-+..+++
T Consensus 163 ~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 199 (201)
T 3hra_A 163 LLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199 (201)
T ss_dssp HHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHh
No 315
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=27.58 E-value=4e+02 Score=25.19 Aligned_cols=28 Identities=18% Similarity=0.407 Sum_probs=21.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcCCCC
Q 006246 202 WNALIDGYLKCGDIEGAKELFKSTKDKN 229 (654)
Q Consensus 202 ~~~li~~~~~~g~~~~A~~~~~~m~~~~ 229 (654)
...+|.-|...|+.++|...++++..|.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~ 33 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGE 33 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcc
Confidence 3567778888888888888888877654
No 316
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=27.07 E-value=1.4e+02 Score=26.16 Aligned_cols=51 Identities=14% Similarity=0.163 Sum_probs=32.8
Q ss_pred HHHHHHHHHhCCCCCCHH-------HHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCC
Q 006246 449 LAEAEEVISSMPMEPNAA-------VWEALLGACRKHGEVEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 449 ~~~A~~~~~~m~~~p~~~-------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 499 (654)
++.|+.+++.+...-|.. +=...+..|.+.|.+++|.+++++.++-.|.+.
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~ 151 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHM 151 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CC
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCch
Confidence 467788888885333311 123345679999999999999999998777664
No 317
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=26.07 E-value=2.6e+02 Score=24.44 Aligned_cols=45 Identities=9% Similarity=0.196 Sum_probs=31.4
Q ss_pred HHHHHHHH---hcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcC
Q 006246 265 SAIIDGYT---KDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310 (654)
Q Consensus 265 ~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 310 (654)
--+|+++. +-.+++.|+-.+-+|++.| .|....-..++.+....|
T Consensus 15 Yd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 15 YDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 34555554 4578999999999999999 665555555666665555
No 318
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=25.83 E-value=5.4e+02 Score=28.91 Aligned_cols=108 Identities=11% Similarity=0.048 Sum_probs=65.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--------------------CC
Q 006246 236 MISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIK--------------------PR 295 (654)
Q Consensus 236 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--------------------p~ 295 (654)
++..+...|..+-|.++..-++. +...--.+..+|...|++++|.+.|++.- .|+. ++
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~~~~~~~ll~~~e~~ 893 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVLREFQEIAEKYHHQ 893 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGGGHHHHHHHHHTTTC
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccchhhhhhccCccccc
Confidence 55556666666666554444443 33333345566667777777777776542 1111 11
Q ss_pred ---cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCch----hHHHHHHHHHHHcC
Q 006246 296 ---KFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDA----VLGTALVDMYAKCG 345 (654)
Q Consensus 296 ---~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~y~~~g 345 (654)
..-|..++..+.+.+.++.+.++-+.+++.--..|. ..++.+..+++..|
T Consensus 894 ~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 894 NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp SHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 125678888888999999999888888875333333 35666666666544
No 319
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=25.76 E-value=2.5e+02 Score=27.04 Aligned_cols=21 Identities=19% Similarity=0.166 Sum_probs=8.1
Q ss_pred HHHHHHhcCCHHHHHHHHhcC
Q 006246 174 GIQMYACFGCVNKARQILDDG 194 (654)
Q Consensus 174 li~~y~~~g~~~~A~~~~~~~ 194 (654)
++.=|...|+.++|.+.++++
T Consensus 17 ll~Ey~~~~d~~Ea~~ci~el 37 (339)
T 1ug3_A 17 IIEEYLHLNDMKEAVQCVQEL 37 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHhCCCHHHHHHHHHHc
Confidence 333333333333333333333
No 320
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=25.71 E-value=6.3e+02 Score=26.89 Aligned_cols=80 Identities=16% Similarity=0.120 Sum_probs=35.2
Q ss_pred HHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHh---cCChHHHH
Q 006246 205 LIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTK---DGYYKEAL 281 (654)
Q Consensus 205 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~ 281 (654)
....+.-.|++|.|+.++-..-..+.+.+...+ ...|-+.....++..=...-...+..||..|.+ ..++.+|+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~~~vdAVH~AIaL---~~~gLL~~~~~lls~~~~~~~lN~arLI~~Yt~~F~~td~~~Al 376 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTFSEMDAVHLAIGL---ASLKLFKIDSSTRLTKKPKRDIRFANILANYTKSFRYSDPRVAV 376 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCHHHHHHHHHHH---HHTTC-----------------CHHHHHHHHHTTTTTTCHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHhcCchhHHHHHHHH---HHcCCccCCCcccccCCCcccccHHHHHHHHHHHhhcCCHHHHH
Confidence 444556778888888777665222222222222 222322221111111000012235666766654 46777777
Q ss_pred HHHHHH
Q 006246 282 EVFNEM 287 (654)
Q Consensus 282 ~~~~~m 287 (654)
++|-.+
T Consensus 377 ~Y~~li 382 (661)
T 2qx5_A 377 EYLVLI 382 (661)
T ss_dssp HHHHGG
T ss_pred HHHHHH
Confidence 776655
No 321
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=25.21 E-value=1e+02 Score=25.78 Aligned_cols=47 Identities=6% Similarity=-0.048 Sum_probs=19.5
Q ss_pred HHHHHHHhHhCCCCCCcc-cHHHHHHHHhccCCcHHHHHHHHHHHHhC
Q 006246 117 VISLYSEMVGVDSKPNKF-TYPTVFKACSITEADKEGVQVHAHVVKNG 163 (654)
Q Consensus 117 A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 163 (654)
+.++|..|...|+--... .|..-...+...|++++|.+++..-++.+
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 445555555444433222 22222223334444444444444444443
No 322
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=24.74 E-value=2.1e+02 Score=23.57 Aligned_cols=61 Identities=10% Similarity=0.167 Sum_probs=32.1
Q ss_pred HhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHH
Q 006246 388 MQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLA 450 (654)
Q Consensus 388 m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~ 450 (654)
+.+.|++++..-. .++..+...+..-.|.++++.+.+. +...+..|...-++.+...|-+.
T Consensus 18 l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 18 IKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQK-DKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHH-STTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCcEE
Confidence 4556666544322 3444444444555667777777664 33444444444556777777653
No 323
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=24.13 E-value=6.1e+02 Score=28.42 Aligned_cols=104 Identities=4% Similarity=-0.087 Sum_probs=67.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCC------------------
Q 006246 267 IIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSIC------------------ 328 (654)
Q Consensus 267 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~------------------ 328 (654)
++..+...|.++-|.++..- ++.+...--.+..+|...|+.++|.+.|+++.. |+.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~-----~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhh-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCc
Confidence 66777888888876554322 233333323456778899999999999987542 111
Q ss_pred --C---chhHHHHHHHHHHHcCCHHHHHHHHhhcC----CCCH----HHHHHHHHHHHHcC
Q 006246 329 --V---DAVLGTALVDMYAKCGRLDMAWKVFEDMK----MKEV----FTWNAMIGGLAMHG 376 (654)
Q Consensus 329 --~---~~~~~~~li~~y~~~g~~~~A~~~~~~m~----~~~~----~~~~~li~~~~~~g 376 (654)
+ ...-|..++..+-+.+.++.+.++-+... ..|. ..|+.+..+.+..|
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 0 12367889999999999988776654433 2333 46777777776554
No 324
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=23.79 E-value=4.4e+02 Score=25.23 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=12.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC
Q 006246 235 AMISGFARFGRFEEARKLFNEMNDK 259 (654)
Q Consensus 235 ~li~~~~~~g~~~~A~~~~~~~~~~ 259 (654)
.++.-|...|+.++|.+.++++..|
T Consensus 16 ~ll~Ey~~~~d~~Ea~~ci~el~~p 40 (339)
T 1ug3_A 16 AIIEEYLHLNDMKEAVQCVQELASP 40 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCc
Confidence 3444444445555555555555443
No 325
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=22.70 E-value=3.7e+02 Score=23.22 Aligned_cols=143 Identities=10% Similarity=0.038 Sum_probs=65.8
Q ss_pred hhcCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHhcccccCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCCch
Q 006246 39 NTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHK---PNVFVWNSVLRACLEHNEPW 115 (654)
Q Consensus 39 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~ 115 (654)
.++..|+++..+.+...-...-..++..-.+.|..+ +. .|+.+-+..+++.-.. +|..-++.|..+ +..|+.+
T Consensus 12 ~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~--~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A-~~~~~~~ 87 (231)
T 3aji_A 12 NLAYSGKLDELKERILADKSLATRTDQDSRTALHWA-CS--AGHTEIVEFLLQLGVPVNDKDDAGWSPLHIA-ASAGXDE 87 (231)
T ss_dssp HHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHH-HH--HTCHHHHHHHHHTTCCSCCCCTTSCCHHHHH-HHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHH-HH--cCcHHHHHHHHHhCCCCCCcCCCCCCHHHHH-HHcCHHH
Confidence 445568887777665542211112233334444433 44 5788888777776443 233334444433 3344443
Q ss_pred HHHHHHHHhHhCCCCCCcc---cHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhh--HHHHHHHHHhcCCHHHHHHH
Q 006246 116 RVISLYSEMVGVDSKPNKF---TYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHV--KSSGIQMYACFGCVNKARQI 190 (654)
Q Consensus 116 ~A~~~~~~m~~~g~~p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~y~~~g~~~~A~~~ 190 (654)
+++.+.+.|..++.. -.+.+. ..+..++.+ +.+.+++.|..++... ..+.+...+..|+.+-+..+
T Consensus 88 ----~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 158 (231)
T 3aji_A 88 ----IVKALLVKGAHVNAVNQNGCTPLH-YAASKNRHE----IAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHIL 158 (231)
T ss_dssp ----HHHHHHHTTCCTTCCCTTSCCHHH-HHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred ----HHHHHHHcCCCCCCCCCCCCCHHH-HHHHcCCHH----HHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHH
Confidence 444445555544322 222232 233445544 3334445555443221 12233333445555555555
Q ss_pred HhcC
Q 006246 191 LDDG 194 (654)
Q Consensus 191 ~~~~ 194 (654)
++..
T Consensus 159 l~~g 162 (231)
T 3aji_A 159 LFYK 162 (231)
T ss_dssp HHTT
T ss_pred HhcC
Confidence 5443
No 326
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=22.50 E-value=38 Score=25.19 Aligned_cols=47 Identities=19% Similarity=0.243 Sum_probs=32.8
Q ss_pred cchHHHHHHHHHHHHHHHHcCcccCCCccccccchhhhhccchhhhhHHHHHHhc
Q 006246 542 PQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGF 596 (654)
Q Consensus 542 ~~~~~~~~~l~~l~~~~~~~g~~pd~~~~~~~~~~~~~~~~~~~~~e~la~~~~~ 596 (654)
+...+++..+++-..+++.+|+.||...+--. ...+.+|.+-..||=
T Consensus 13 gdlirIl~~ieekinELk~dG~ePDIiL~G~e--------ayef~~e~v~~e~g~ 59 (103)
T 2pk8_A 13 GDLIRILGEIEEKMNELKMDGFNPDIILFGRE--------AYNFLSNLLKKEMEE 59 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCEEEECHH--------HHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCeEEEcHH--------HHHHHHHHHhHhhcc
Confidence 45677888888999999999999997664221 123345666666664
No 327
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=22.20 E-value=20 Score=22.15 Aligned_cols=12 Identities=42% Similarity=0.933 Sum_probs=9.6
Q ss_pred ccccCcchhhHH
Q 006246 610 NLRVCEDCHSAT 621 (654)
Q Consensus 610 ~l~~c~~~h~~~ 621 (654)
+.|+|.+|+.-+
T Consensus 16 ~YRvC~~CgkPi 27 (44)
T 2lo3_A 16 QYRVCEKCGKPL 27 (44)
T ss_dssp CEEECTTTCCEE
T ss_pred cchhhcccCCcc
Confidence 679999998544
No 328
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=22.05 E-value=1.7e+02 Score=21.75 Aligned_cols=37 Identities=16% Similarity=0.236 Sum_probs=25.2
Q ss_pred cCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHH
Q 006246 243 FGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKE 279 (654)
Q Consensus 243 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 279 (654)
....+.|.++++.++.+....|..++.++.+.+...-
T Consensus 49 ~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~L 85 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDL 85 (94)
T ss_dssp SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHH
T ss_pred CChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHH
Confidence 4556777777777777777777777777776665443
No 329
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=21.82 E-value=3.9e+02 Score=23.13 Aligned_cols=26 Identities=8% Similarity=-0.194 Sum_probs=14.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCC
Q 006246 302 VLAACASLGALDQGIWIHDHVKRNSI 327 (654)
Q Consensus 302 ll~~~~~~g~~~~a~~~~~~~~~~~~ 327 (654)
.+...+..|+.+.+.++++.+.+.|.
T Consensus 157 ~L~~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 157 VLHILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCC
Confidence 34444555666666566666666554
No 330
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=21.31 E-value=3.8e+02 Score=23.24 Aligned_cols=82 Identities=15% Similarity=0.009 Sum_probs=43.6
Q ss_pred HHHHhcCCHHHHHHHHHhcCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---------cchHHHHHHH
Q 006246 238 SGFARFGRFEEARKLFNEMNDK---DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPR---------KFVLSCVLAA 305 (654)
Q Consensus 238 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---------~~t~~~ll~~ 305 (654)
...+..|+.+-+.-+++.-.+. |..-++ -+...+..|+.+-+..+++.+.+.|..++ ..-.+ .+..
T Consensus 126 ~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t-~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~t-pl~~ 203 (232)
T 2rfa_A 126 SFAACVGSEEIVRLLIEHGADIRAQDSLGNT-VLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLT-PFKL 203 (232)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCC-HHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCCCCCCCCCCCC-HHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCC-HHHH
Confidence 3344556666666666653332 222222 33445667888877777788888775432 22222 2334
Q ss_pred HHhcCChhHHHHHHHH
Q 006246 306 CASLGALDQGIWIHDH 321 (654)
Q Consensus 306 ~~~~g~~~~a~~~~~~ 321 (654)
.+..|+.+-+..+++.
T Consensus 204 A~~~g~~~~v~~Ll~~ 219 (232)
T 2rfa_A 204 AGVEGNIVMFQHLMQK 219 (232)
T ss_dssp HHHHTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHhc
Confidence 4455665555444443
No 331
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=20.88 E-value=4.8e+02 Score=23.77 Aligned_cols=16 Identities=19% Similarity=0.308 Sum_probs=8.1
Q ss_pred HhcCCHHHHHHHHhcC
Q 006246 179 ACFGCVNKARQILDDG 194 (654)
Q Consensus 179 ~~~g~~~~A~~~~~~~ 194 (654)
+..|..+-+..+++..
T Consensus 133 ~~~~~~~~v~~Ll~~g 148 (285)
T 3d9h_A 133 CVSGSWDCVNLLLQHG 148 (285)
T ss_dssp HHHTCHHHHHHHHHTT
T ss_pred HHcCHHHHHHHHHHCC
Confidence 3445555555555543
No 332
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=20.73 E-value=3.1e+02 Score=23.35 Aligned_cols=25 Identities=16% Similarity=0.123 Sum_probs=13.0
Q ss_pred HHHHHHHHHHcC-CHHHHHHHHHhCC
Q 006246 436 YGCIVDLLGRAG-YLAEAEEVISSMP 460 (654)
Q Consensus 436 ~~~li~~~~~~g-~~~~A~~~~~~m~ 460 (654)
..-++..+.+.| .++.+..+++.+.
T Consensus 139 ~~K~~~~L~rrGF~~~~I~~vl~~l~ 164 (177)
T 3e3v_A 139 QNKIKQSLLTKGFSYDIIDTIIQELD 164 (177)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHCc
Confidence 445555556666 3444455555543
No 333
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.42 E-value=1.7e+02 Score=30.01 Aligned_cols=64 Identities=14% Similarity=0.063 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHhCCCCCC------HHHH-HHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Q 006246 435 HYGCIVDLLGRAGYLAEAEEVISSMPMEPN------AAVW-EALLGACRKHGEVEFGERLGKILLEMEPQN 498 (654)
Q Consensus 435 ~~~~li~~~~~~g~~~~A~~~~~~m~~~p~------~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 498 (654)
.++.++..|...+.++.|..++.+..++.. ...| -.++..+...+++.+|.+.+..++..-|.+
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 355555666666666666666665532211 1112 123444556666666666666666655544
No 334
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=20.41 E-value=2.9e+02 Score=21.62 Aligned_cols=69 Identities=13% Similarity=0.146 Sum_probs=42.0
Q ss_pred ChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHH
Q 006246 377 RADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAE 451 (654)
Q Consensus 377 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~ 451 (654)
.+.+|+.-+++.... .+|......++..+... ++.++++.....+..|+ .+.++...+....+.|-+++
T Consensus 3 ~~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~ 71 (119)
T 1wty_A 3 SLARAVERLKAALER--PKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPE 71 (119)
T ss_dssp CHHHHHHHHHHHHSS--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCc
Confidence 456677777766554 45666666666655443 56666666666655576 35666666666666665433
Done!