Query 006249
Match_columns 654
No_of_seqs 342 out of 1575
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 20:31:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006249.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006249hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03059 beta-galactosidase; P 100.0 2E-171 5E-176 1454.9 58.5 618 23-652 26-648 (840)
2 KOG0496 Beta-galactosidase [Ca 100.0 6E-143 1E-147 1179.4 35.9 562 24-652 17-585 (649)
3 PF01301 Glyco_hydro_35: Glyco 100.0 3.4E-91 7.3E-96 740.9 19.1 297 33-338 1-318 (319)
4 COG1874 LacA Beta-galactosidas 100.0 5.1E-36 1.1E-40 339.7 10.5 290 27-325 1-333 (673)
5 PF02449 Glyco_hydro_42: Beta- 99.8 2.4E-20 5.2E-25 203.0 13.7 263 48-341 2-373 (374)
6 PF02836 Glyco_hydro_2_C: Glyc 99.5 5.6E-13 1.2E-17 140.8 18.1 192 27-259 1-212 (298)
7 PRK10150 beta-D-glucuronidase; 99.4 9E-11 1.9E-15 135.8 24.3 160 25-219 276-449 (604)
8 PRK10340 ebgA cryptic beta-D-g 99.3 9.8E-11 2.1E-15 142.2 17.6 186 26-254 319-514 (1021)
9 PRK09525 lacZ beta-D-galactosi 99.2 2.4E-10 5.2E-15 138.7 18.2 149 26-219 335-489 (1027)
10 COG3250 LacZ Beta-galactosidas 99.1 2.3E-09 5.1E-14 126.2 17.2 120 25-186 284-409 (808)
11 PF02837 Glyco_hydro_2_N: Glyc 99.1 1.2E-09 2.5E-14 105.4 11.8 102 471-578 62-165 (167)
12 PF00150 Cellulase: Cellulase 99.0 4.7E-09 1E-13 108.4 15.1 162 36-219 3-172 (281)
13 PF13364 BetaGal_dom4_5: Beta- 98.8 3.9E-08 8.4E-13 89.6 10.0 82 467-555 25-109 (111)
14 PRK10150 beta-D-glucuronidase; 98.6 3.4E-07 7.4E-12 106.2 12.4 114 461-581 46-181 (604)
15 PRK09525 lacZ beta-D-galactosi 98.4 1.7E-06 3.6E-11 105.7 12.6 101 476-582 119-221 (1027)
16 PRK10340 ebgA cryptic beta-D-g 98.4 1.7E-06 3.6E-11 105.8 12.1 101 476-582 108-209 (1021)
17 smart00633 Glyco_10 Glycosyl h 98.2 4.1E-06 8.9E-11 86.9 8.7 117 79-220 3-126 (254)
18 PF03198 Glyco_hydro_72: Gluca 98.2 2.2E-05 4.7E-10 83.0 13.1 155 23-215 7-179 (314)
19 TIGR03356 BGL beta-galactosida 98.1 1E-05 2.2E-10 90.2 8.6 109 56-185 54-163 (427)
20 PLN02705 beta-amylase 98.0 3.3E-05 7.1E-10 86.9 11.8 145 54-210 266-460 (681)
21 PLN02801 beta-amylase 98.0 5E-05 1.1E-09 84.3 12.2 82 54-139 35-126 (517)
22 PLN02905 beta-amylase 98.0 5.4E-05 1.2E-09 85.5 12.2 145 55-211 285-479 (702)
23 PLN00197 beta-amylase; Provisi 98.0 6E-05 1.3E-09 84.4 12.3 83 54-140 125-217 (573)
24 PLN02803 beta-amylase 97.9 5.2E-05 1.1E-09 84.6 9.4 82 55-140 106-197 (548)
25 PLN02161 beta-amylase 97.8 7.5E-05 1.6E-09 83.0 9.5 83 54-140 115-207 (531)
26 PF13204 DUF4038: Protein of u 97.6 0.00039 8.5E-09 73.7 11.7 224 31-285 2-274 (289)
27 PF01373 Glyco_hydro_14: Glyco 97.5 0.00012 2.6E-09 79.9 5.6 115 57-181 17-153 (402)
28 PF00232 Glyco_hydro_1: Glycos 97.3 0.0002 4.4E-09 80.6 4.8 97 56-164 58-156 (455)
29 PF07745 Glyco_hydro_53: Glyco 97.2 0.0022 4.7E-08 69.3 11.4 137 59-215 27-172 (332)
30 PF00331 Glyco_hydro_10: Glyco 97.2 0.00053 1.1E-08 73.8 5.8 158 43-221 11-180 (320)
31 PRK09852 cryptic 6-phospho-bet 97.0 0.0017 3.7E-08 73.4 8.1 96 56-163 71-169 (474)
32 PRK15014 6-phospho-beta-glucos 97.0 0.0021 4.5E-08 72.9 8.7 96 56-163 69-167 (477)
33 PRK13511 6-phospho-beta-galact 96.8 0.0031 6.8E-08 71.3 8.5 96 56-163 54-150 (469)
34 TIGR01233 lacG 6-phospho-beta- 96.8 0.004 8.7E-08 70.4 8.7 96 56-163 53-149 (467)
35 PF14488 DUF4434: Domain of un 96.8 0.018 3.9E-07 56.3 12.1 136 51-216 15-158 (166)
36 PLN02998 beta-glucosidase 96.8 0.0014 3.1E-08 74.4 5.1 96 56-163 82-179 (497)
37 PRK09593 arb 6-phospho-beta-gl 96.8 0.0042 9E-08 70.5 8.6 96 56-163 73-171 (478)
38 COG3693 XynA Beta-1,4-xylanase 96.7 0.011 2.3E-07 62.9 10.8 134 65-221 55-195 (345)
39 COG3867 Arabinogalactan endo-1 96.7 0.012 2.6E-07 61.7 10.4 124 57-193 64-191 (403)
40 PLN02814 beta-glucosidase 96.6 0.0055 1.2E-07 69.9 8.1 96 56-163 77-174 (504)
41 PRK09589 celA 6-phospho-beta-g 96.6 0.0027 5.8E-08 72.0 5.4 96 56-163 67-165 (476)
42 COG2730 BglC Endoglucanase [Ca 96.5 0.0087 1.9E-07 66.5 8.7 115 54-186 66-193 (407)
43 PLN02849 beta-glucosidase 96.5 0.0029 6.4E-08 72.1 5.1 96 56-163 79-176 (503)
44 PF02055 Glyco_hydro_30: O-Gly 96.3 0.027 5.9E-07 64.1 11.3 335 39-402 74-491 (496)
45 KOG2024 Beta-Glucuronidase GUS 96.1 0.013 2.7E-07 60.6 6.4 103 473-579 84-188 (297)
46 KOG0496 Beta-galactosidase [Ca 96.0 0.084 1.8E-06 60.9 13.4 71 476-555 556-627 (649)
47 PF14871 GHL6: Hypothetical gl 95.6 0.065 1.4E-06 50.5 8.9 98 60-162 4-123 (132)
48 KOG2230 Predicted beta-mannosi 95.4 0.11 2.4E-06 58.7 11.0 149 32-220 328-494 (867)
49 smart00812 Alpha_L_fucos Alpha 95.3 2.7 5.9E-05 46.6 21.6 248 49-351 77-342 (384)
50 COG2723 BglB Beta-glucosidase/ 95.2 0.023 5.1E-07 63.5 5.1 97 55-163 58-157 (460)
51 COG3934 Endo-beta-mannanase [C 94.6 0.023 5E-07 63.1 3.0 157 33-207 3-168 (587)
52 PRK09936 hypothetical protein; 94.0 1.1 2.5E-05 47.4 13.8 57 52-114 34-91 (296)
53 COG3250 LacZ Beta-galactosidas 93.6 0.43 9.3E-06 57.5 11.1 120 459-584 44-184 (808)
54 PF08531 Bac_rhamnosid_N: Alph 93.5 0.38 8.2E-06 47.2 8.9 95 499-596 5-114 (172)
55 TIGR01515 branching_enzym alph 93.1 1.7 3.7E-05 51.0 15.0 151 63-217 164-347 (613)
56 smart00642 Aamy Alpha-amylase 91.8 0.44 9.5E-06 46.5 6.7 66 57-122 20-97 (166)
57 PRK14706 glycogen branching en 91.8 3.2 6.9E-05 49.1 14.9 54 62-115 174-237 (639)
58 TIGR00542 hxl6Piso_put hexulos 91.6 2.8 6E-05 43.8 12.9 131 55-213 15-149 (279)
59 PRK05402 glycogen branching en 91.5 2.1 4.6E-05 51.3 13.3 54 62-115 272-335 (726)
60 COG1649 Uncharacterized protei 91.5 1.7 3.7E-05 48.5 11.5 122 54-185 62-210 (418)
61 PF02638 DUF187: Glycosyl hydr 91.1 1.5 3.2E-05 47.2 10.4 118 54-182 17-162 (311)
62 PLN02447 1,4-alpha-glucan-bran 90.9 4.3 9.4E-05 48.7 14.8 61 56-117 251-322 (758)
63 PRK12568 glycogen branching en 90.2 5.3 0.00011 47.9 14.7 56 61-118 275-342 (730)
64 PF01229 Glyco_hydro_39: Glyco 89.9 1.6 3.5E-05 49.7 10.0 69 45-116 28-105 (486)
65 cd00019 AP2Ec AP endonuclease 89.2 4 8.7E-05 42.6 11.6 98 56-182 10-108 (279)
66 PF05913 DUF871: Bacterial pro 88.7 0.65 1.4E-05 50.9 5.4 72 44-121 2-73 (357)
67 PRK14705 glycogen branching en 88.7 7.7 0.00017 49.0 15.1 55 61-115 771-835 (1224)
68 PLN03059 beta-galactosidase; P 88.5 0.71 1.5E-05 55.5 5.9 67 478-552 620-713 (840)
69 PRK13210 putative L-xylulose 5 88.5 4.3 9.3E-05 42.2 11.2 131 56-213 16-149 (284)
70 TIGR02631 xylA_Arthro xylose i 86.1 11 0.00024 41.8 13.2 138 54-217 30-178 (382)
71 PF01261 AP_endonuc_2: Xylose 85.8 1.6 3.4E-05 42.6 5.8 124 62-213 1-128 (213)
72 PRK09441 cytoplasmic alpha-amy 85.4 1.4 3.1E-05 50.1 5.9 60 56-115 19-101 (479)
73 PF00128 Alpha-amylase: Alpha 84.3 1.1 2.3E-05 46.5 4.0 57 59-115 7-72 (316)
74 PRK01060 endonuclease IV; Prov 84.2 20 0.00044 37.2 13.6 93 58-179 14-109 (281)
75 PRK12313 glycogen branching en 83.9 2 4.4E-05 50.6 6.6 51 62-115 177-240 (633)
76 PF13200 DUF4015: Putative gly 83.4 8.3 0.00018 41.7 10.4 62 54-115 11-81 (316)
77 TIGR03234 OH-pyruv-isom hydrox 83.1 22 0.00049 36.3 13.2 43 57-113 15-57 (254)
78 PF14307 Glyco_tran_WbsX: Glyc 82.3 13 0.00028 40.5 11.6 139 52-219 54-197 (345)
79 COG0296 GlgB 1,4-alpha-glucan 81.9 2.5 5.4E-05 49.6 6.1 55 55-114 164-233 (628)
80 PRK13209 L-xylulose 5-phosphat 81.1 13 0.00029 38.6 10.8 126 56-213 21-154 (283)
81 PRK09856 fructoselysine 3-epim 80.4 29 0.00062 35.9 13.0 131 56-213 13-145 (275)
82 PF07172 GRP: Glycine rich pro 80.1 1.2 2.6E-05 39.7 2.1 19 1-19 1-19 (95)
83 PF08308 PEGA: PEGA domain; I 79.5 3.5 7.5E-05 33.9 4.7 41 501-551 3-43 (71)
84 PRK09997 hydroxypyruvate isome 79.4 28 0.0006 35.9 12.4 42 58-113 17-58 (258)
85 PF02679 ComA: (2R)-phospho-3- 79.3 2.9 6.4E-05 43.5 5.0 52 55-116 83-134 (244)
86 TIGR02402 trehalose_TreZ malto 79.3 3.4 7.5E-05 47.8 6.2 54 59-115 114-180 (542)
87 PF13199 Glyco_hydro_66: Glyco 78.9 43 0.00092 39.2 14.7 159 55-219 117-308 (559)
88 TIGR01531 glyc_debranch glycog 78.8 6.7 0.00015 49.8 8.7 111 33-149 104-234 (1464)
89 PLN02960 alpha-amylase 78.6 65 0.0014 39.6 16.4 57 59-115 420-486 (897)
90 TIGR02403 trehalose_treC alpha 78.0 3.4 7.3E-05 47.9 5.6 60 56-117 27-97 (543)
91 PF06832 BiPBP_C: Penicillin-B 77.7 5.7 0.00012 34.3 5.6 51 498-555 32-82 (89)
92 PLN00196 alpha-amylase; Provis 77.6 9 0.0002 43.2 8.6 59 59-117 47-114 (428)
93 PRK09989 hypothetical protein; 77.3 25 0.00054 36.3 11.3 43 57-113 16-58 (258)
94 KOG0626 Beta-glucosidase, lact 76.9 4.9 0.00011 46.0 6.2 99 57-163 92-194 (524)
95 PRK12677 xylose isomerase; Pro 76.2 44 0.00096 37.1 13.5 90 56-163 31-124 (384)
96 cd06593 GH31_xylosidase_YicI Y 75.4 5.3 0.00011 42.6 5.8 66 54-121 22-92 (308)
97 PRK10785 maltodextrin glucosid 74.1 6.5 0.00014 46.1 6.6 57 59-115 182-246 (598)
98 PF02837 Glyco_hydro_2_N: Glyc 74.0 6.2 0.00013 37.7 5.4 27 622-648 66-95 (167)
99 TIGR02104 pulA_typeI pullulana 73.8 5.9 0.00013 46.5 6.2 55 60-115 168-249 (605)
100 smart00518 AP2Ec AP endonuclea 73.7 26 0.00057 36.2 10.4 101 46-179 3-104 (273)
101 cd06592 GH31_glucosidase_KIAA1 73.6 23 0.00049 37.9 10.1 69 51-122 25-97 (303)
102 PF10731 Anophelin: Thrombin i 73.6 2.9 6.3E-05 33.9 2.4 47 1-49 1-51 (65)
103 PF03659 Glyco_hydro_71: Glyco 73.5 14 0.00031 41.1 8.7 53 54-115 15-67 (386)
104 PRK09505 malS alpha-amylase; R 73.4 6.7 0.00015 46.8 6.5 59 58-116 232-313 (683)
105 PRK10933 trehalose-6-phosphate 72.8 7.4 0.00016 45.3 6.6 55 58-115 35-101 (551)
106 TIGR03849 arch_ComA phosphosul 71.5 7.7 0.00017 40.2 5.6 53 55-117 70-122 (237)
107 PF01791 DeoC: DeoC/LacD famil 71.3 1.7 3.6E-05 44.6 0.8 53 59-114 79-131 (236)
108 cd06595 GH31_xylosidase_XylS-l 70.9 35 0.00076 36.2 10.7 71 48-118 14-97 (292)
109 TIGR02456 treS_nterm trehalose 70.9 6.1 0.00013 45.7 5.4 57 56-115 28-96 (539)
110 COG3589 Uncharacterized conser 70.7 13 0.00027 40.4 7.1 72 44-122 4-76 (360)
111 cd06602 GH31_MGAM_SI_GAA This 70.1 35 0.00076 37.1 10.7 74 48-122 13-93 (339)
112 cd06589 GH31 The enzymes of gl 69.8 62 0.0013 33.8 12.1 65 54-119 22-90 (265)
113 PF01120 Alpha_L_fucos: Alpha- 69.4 1.8E+02 0.0038 31.8 16.2 234 61-345 96-343 (346)
114 PF14587 Glyco_hydr_30_2: O-Gl 69.3 33 0.00071 38.1 10.1 122 84-220 93-227 (384)
115 TIGR00677 fadh2_euk methylenet 68.1 20 0.00044 38.0 8.1 109 42-164 130-251 (281)
116 PF14683 CBM-like: Polysacchar 67.5 10 0.00022 37.2 5.3 54 498-553 78-152 (167)
117 cd04908 ACT_Bt0572_1 N-termina 66.4 19 0.0004 29.1 5.9 56 54-113 11-66 (66)
118 PRK14510 putative bifunctional 65.3 9.6 0.00021 48.5 5.8 56 60-115 191-267 (1221)
119 PRK09875 putative hydrolase; P 65.0 43 0.00093 35.9 9.9 88 27-134 8-95 (292)
120 PF02065 Melibiase: Melibiase; 64.9 87 0.0019 35.0 12.6 89 49-137 51-148 (394)
121 KOG2230 Predicted beta-mannosi 64.7 13 0.00028 42.9 6.0 68 480-554 79-146 (867)
122 COG3915 Uncharacterized protei 64.6 32 0.0007 32.7 7.6 47 61-113 39-87 (155)
123 PLN02361 alpha-amylase 64.6 15 0.00033 41.1 6.6 57 59-115 32-96 (401)
124 PF12876 Cellulase-like: Sugar 63.9 11 0.00025 32.5 4.4 47 171-217 7-62 (88)
125 TIGR02100 glgX_debranch glycog 62.4 12 0.00026 44.8 5.6 55 61-115 189-265 (688)
126 TIGR02401 trehalose_TreY malto 62.4 17 0.00036 44.3 6.8 61 54-117 14-87 (825)
127 cd06568 GH20_SpHex_like A subg 61.2 54 0.0012 35.6 10.0 75 31-115 3-95 (329)
128 cd06564 GH20_DspB_LnbB-like Gl 61.1 58 0.0013 35.1 10.2 59 54-115 15-102 (326)
129 cd02742 GH20_hexosaminidase Be 60.0 44 0.00095 35.7 9.0 59 54-115 14-92 (303)
130 cd06591 GH31_xylosidase_XylS X 59.6 15 0.00033 39.5 5.4 71 48-119 13-90 (319)
131 PF14307 Glyco_tran_WbsX: Glyc 59.2 1.2E+02 0.0027 33.0 12.4 44 30-75 150-194 (345)
132 COG3623 SgaU Putative L-xylulo 58.6 97 0.0021 32.3 10.4 126 55-213 17-151 (287)
133 PRK03705 glycogen debranching 58.2 16 0.00036 43.4 5.8 55 61-115 184-262 (658)
134 PF04914 DltD_C: DltD C-termin 58.1 21 0.00046 33.6 5.4 52 95-165 36-88 (130)
135 TIGR02103 pullul_strch alpha-1 57.9 18 0.00039 44.4 6.2 21 95-115 404-424 (898)
136 PRK14507 putative bifunctional 57.6 21 0.00045 46.7 6.8 61 54-117 756-829 (1693)
137 PRK14582 pgaB outer membrane N 57.6 44 0.00095 39.9 9.1 110 56-184 334-468 (671)
138 PF10566 Glyco_hydro_97: Glyco 57.5 40 0.00087 35.8 7.9 115 54-176 30-160 (273)
139 TIGR00419 tim triosephosphate 57.4 22 0.00047 36.1 5.7 45 61-115 73-117 (205)
140 PRK14511 maltooligosyl trehalo 57.3 23 0.0005 43.3 6.8 62 54-118 18-92 (879)
141 cd06565 GH20_GcnA-like Glycosy 56.3 57 0.0012 34.9 9.0 66 54-122 15-87 (301)
142 cd06563 GH20_chitobiase-like T 55.9 53 0.0011 36.0 8.9 59 54-115 16-106 (357)
143 PRK13398 3-deoxy-7-phosphohept 55.1 57 0.0012 34.5 8.6 82 26-115 15-98 (266)
144 cd06601 GH31_lyase_GLase GLase 55.1 57 0.0012 35.5 8.9 72 48-120 13-89 (332)
145 TIGR01626 ytfJ_HI0045 conserve 55.0 1.5E+02 0.0032 29.7 11.0 71 1-72 1-91 (184)
146 TIGR02102 pullulan_Gpos pullul 55.0 21 0.00045 45.0 6.1 21 95-115 555-575 (1111)
147 PF12733 Cadherin-like: Cadher 54.8 32 0.00069 29.3 5.6 47 499-554 26-73 (88)
148 PRK08645 bifunctional homocyst 54.8 42 0.00091 39.6 8.4 109 39-163 461-578 (612)
149 PRK08673 3-deoxy-7-phosphohept 53.9 34 0.00074 37.4 6.9 81 26-115 81-164 (335)
150 COG5520 O-Glycosyl hydrolase [ 53.0 3.1E+02 0.0067 30.5 13.6 86 104-210 111-206 (433)
151 cd06545 GH18_3CO4_chitinase Th 52.5 63 0.0014 33.3 8.4 96 86-210 36-132 (253)
152 PLN02877 alpha-amylase/limit d 52.0 27 0.00058 43.2 6.3 21 95-115 466-486 (970)
153 PF07691 PA14: PA14 domain; I 51.8 92 0.002 28.5 8.7 70 478-555 47-122 (145)
154 cd06547 GH85_ENGase Endo-beta- 51.4 35 0.00075 37.4 6.5 115 72-217 32-148 (339)
155 cd06598 GH31_transferase_CtsZ 51.3 28 0.0006 37.5 5.7 67 54-120 22-95 (317)
156 PF11324 DUF3126: Protein of u 51.1 40 0.00086 27.9 5.1 30 507-536 26-57 (63)
157 cd06603 GH31_GANC_GANAB_alpha 50.9 25 0.00055 38.1 5.4 74 48-122 13-91 (339)
158 PRK00042 tpiA triosephosphate 50.1 29 0.00062 36.4 5.4 50 61-116 78-127 (250)
159 smart00481 POLIIIAc DNA polyme 49.6 52 0.0011 26.5 5.8 44 57-113 16-59 (67)
160 cd06600 GH31_MGAM-like This fa 49.0 29 0.00062 37.4 5.4 73 48-121 13-90 (317)
161 cd06599 GH31_glycosidase_Aec37 48.5 39 0.00084 36.3 6.3 66 55-120 28-98 (317)
162 PLN02826 dihydroorotate dehydr 48.1 2.9E+02 0.0062 31.1 13.2 155 43-228 188-357 (409)
163 PF03170 BcsB: Bacterial cellu 47.6 72 0.0016 37.5 8.8 71 484-555 329-411 (605)
164 PRK09432 metF 5,10-methylenete 47.3 54 0.0012 35.1 7.1 87 61-164 168-266 (296)
165 PRK09856 fructoselysine 3-epim 47.1 27 0.00059 36.1 4.7 55 57-115 91-149 (275)
166 smart00854 PGA_cap Bacterial c 46.6 1.3E+02 0.0029 30.6 9.7 45 59-112 63-107 (239)
167 cd00311 TIM Triosephosphate is 45.8 44 0.00095 34.8 5.9 50 61-116 76-125 (242)
168 COG5309 Exo-beta-1,3-glucanase 45.6 1.2E+02 0.0026 32.2 8.9 119 54-221 61-180 (305)
169 PF01055 Glyco_hydro_31: Glyco 45.5 30 0.00065 38.7 5.0 70 54-124 41-112 (441)
170 cd06562 GH20_HexA_HexB-like Be 44.4 1.9E+02 0.0042 31.5 11.0 75 31-115 3-90 (348)
171 cd06570 GH20_chitobiase-like_1 44.0 86 0.0019 33.8 8.0 63 53-115 15-88 (311)
172 cd06604 GH31_glucosidase_II_Ma 44.0 41 0.00088 36.5 5.6 73 48-121 13-90 (339)
173 COG1306 Uncharacterized conser 43.6 41 0.00089 36.1 5.3 62 54-115 75-144 (400)
174 PF01261 AP_endonuc_2: Xylose 43.2 26 0.00057 33.9 3.7 63 55-118 70-135 (213)
175 COG0366 AmyA Glycosidases [Car 43.1 32 0.0007 38.5 4.9 56 60-115 33-97 (505)
176 TIGR02455 TreS_stutzeri trehal 42.8 64 0.0014 38.3 7.1 75 54-132 76-175 (688)
177 cd06416 GH25_Lys1-like Lys-1 i 42.2 50 0.0011 32.7 5.6 89 44-135 54-157 (196)
178 PRK14566 triosephosphate isome 42.1 69 0.0015 33.8 6.7 50 61-116 87-136 (260)
179 PF02228 Gag_p19: Major core p 41.9 12 0.00025 32.2 0.8 37 54-107 20-56 (92)
180 PRK12858 tagatose 1,6-diphosph 41.8 33 0.00071 37.6 4.4 65 48-115 99-163 (340)
181 TIGR00676 fadh2 5,10-methylene 41.1 92 0.002 32.8 7.6 109 41-163 125-246 (272)
182 PF03170 BcsB: Bacterial cellu 40.7 1.1E+02 0.0024 36.0 8.9 48 508-555 62-112 (605)
183 COG1735 Php Predicted metal-de 40.5 1.2E+02 0.0025 32.9 8.1 123 59-220 51-173 (316)
184 PRK13210 putative L-xylulose 5 40.1 43 0.00093 34.7 4.9 60 56-116 94-154 (284)
185 smart00758 PA14 domain in bact 39.9 1.1E+02 0.0023 28.1 7.0 65 479-552 46-111 (136)
186 COG1523 PulA Type II secretory 39.4 44 0.00094 40.1 5.3 55 61-115 205-285 (697)
187 PRK09997 hydroxypyruvate isome 39.2 42 0.00092 34.5 4.7 60 56-115 85-144 (258)
188 PLN02784 alpha-amylase 38.8 67 0.0015 39.3 6.7 57 59-115 524-588 (894)
189 cd06418 GH25_BacA-like BacA is 38.3 1.4E+02 0.003 30.5 8.1 91 53-165 49-140 (212)
190 cd07381 MPP_CapA CapA and rela 38.2 2.3E+02 0.0051 28.7 9.9 45 59-112 67-111 (239)
191 PRK14565 triosephosphate isome 38.1 58 0.0013 33.9 5.4 50 61-116 77-126 (237)
192 TIGR02635 RhaI_grampos L-rhamn 38.0 4.1E+02 0.0089 29.6 12.3 157 25-215 11-173 (378)
193 cd06597 GH31_transferase_CtsY 37.5 67 0.0014 35.0 6.0 73 48-120 13-110 (340)
194 PRK13209 L-xylulose 5-phosphat 36.2 1.9E+02 0.004 30.0 9.0 103 53-185 54-161 (283)
195 cd08560 GDPD_EcGlpQ_like_1 Gly 36.0 1E+02 0.0023 33.9 7.2 53 57-115 246-298 (356)
196 PRK15492 triosephosphate isome 35.6 77 0.0017 33.4 5.9 50 61-116 86-135 (260)
197 COG0149 TpiA Triosephosphate i 35.3 77 0.0017 33.3 5.7 72 38-116 58-129 (251)
198 PRK10076 pyruvate formate lyas 35.3 1.6E+02 0.0035 29.9 8.1 125 55-213 53-209 (213)
199 TIGR00433 bioB biotin syntheta 35.2 58 0.0013 34.1 5.1 52 59-113 123-176 (296)
200 TIGR00587 nfo apurinic endonuc 35.2 2.6E+02 0.0057 29.2 9.9 83 59-163 14-98 (274)
201 cd01299 Met_dep_hydrolase_A Me 35.1 77 0.0017 33.8 6.0 61 54-115 118-180 (342)
202 PLN02429 triosephosphate isome 34.7 67 0.0015 34.8 5.4 50 61-116 139-188 (315)
203 PRK12331 oxaloacetate decarbox 34.6 77 0.0017 36.0 6.1 56 48-115 88-143 (448)
204 COG1099 Predicted metal-depend 34.3 1.2E+02 0.0025 31.6 6.6 55 59-116 14-71 (254)
205 TIGR00542 hxl6Piso_put hexulos 34.3 62 0.0014 33.6 5.1 58 57-115 95-153 (279)
206 TIGR03234 OH-pyruv-isom hydrox 34.0 54 0.0012 33.5 4.5 59 56-115 84-143 (254)
207 PF08924 DUF1906: Domain of un 33.9 1.1E+02 0.0023 29.0 6.1 90 54-165 36-128 (136)
208 PLN02561 triosephosphate isome 33.7 82 0.0018 33.1 5.7 50 61-116 80-129 (253)
209 PF11008 DUF2846: Protein of u 33.3 79 0.0017 28.8 4.9 38 508-552 40-77 (117)
210 PF03644 Glyco_hydro_85: Glyco 32.8 44 0.00096 36.1 3.7 115 71-217 27-143 (311)
211 KOG1065 Maltase glucoamylase a 32.5 82 0.0018 38.2 6.0 65 55-124 310-380 (805)
212 PTZ00372 endonuclease 4-like p 32.5 2.3E+02 0.005 32.0 9.3 84 32-116 149-240 (413)
213 KOG0622 Ornithine decarboxylas 32.3 67 0.0014 36.0 4.9 63 53-129 190-257 (448)
214 PF03422 CBM_6: Carbohydrate b 32.1 2.4E+02 0.0053 25.2 8.0 73 476-554 31-111 (125)
215 PTZ00333 triosephosphate isome 31.8 99 0.0021 32.5 6.0 49 62-116 82-130 (255)
216 TIGR01698 PUNP purine nucleoti 31.2 67 0.0015 33.4 4.5 40 35-74 47-87 (237)
217 cd00537 MTHFR Methylenetetrahy 31.1 1.5E+02 0.0032 31.0 7.3 91 60-164 151-250 (274)
218 cd07937 DRE_TIM_PC_TC_5S Pyruv 31.0 1.1E+02 0.0024 32.2 6.3 49 53-113 88-136 (275)
219 PRK14567 triosephosphate isome 30.7 1E+02 0.0022 32.4 5.9 50 61-116 77-126 (253)
220 cd02875 GH18_chitobiase Chitob 30.2 6.8E+02 0.015 27.4 12.4 57 98-185 67-123 (358)
221 PF00728 Glyco_hydro_20: Glyco 30.1 52 0.0011 35.3 3.7 62 54-115 16-93 (351)
222 PF14701 hDGE_amylase: glucano 29.8 1.6E+02 0.0036 33.2 7.5 104 54-163 20-143 (423)
223 PRK05265 pyridoxine 5'-phospha 29.7 79 0.0017 32.9 4.7 48 56-121 113-161 (239)
224 KOG1412 Aspartate aminotransfe 29.5 1.1E+02 0.0023 33.4 5.7 117 54-220 131-250 (410)
225 cd04882 ACT_Bt0572_2 C-termina 29.4 1E+02 0.0022 24.0 4.4 55 55-111 10-64 (65)
226 PRK09267 flavodoxin FldA; Vali 29.4 3.2E+02 0.0069 26.1 8.7 74 36-112 44-117 (169)
227 PRK13125 trpA tryptophan synth 29.1 1E+02 0.0022 31.9 5.4 46 60-116 92-137 (244)
228 cd02871 GH18_chitinase_D-like 28.8 2.5E+02 0.0054 30.1 8.6 88 95-211 60-147 (312)
229 PRK14582 pgaB outer membrane N 28.4 1.3E+02 0.0028 36.1 6.7 62 52-113 68-137 (671)
230 COG0167 PyrD Dihydroorotate de 28.2 4.9E+02 0.011 28.2 10.6 128 54-221 107-250 (310)
231 PRK14040 oxaloacetate decarbox 28.0 91 0.002 36.8 5.4 54 48-113 89-142 (593)
232 PRK11114 cellulose synthase re 27.9 2E+02 0.0043 35.0 8.4 47 508-554 114-164 (756)
233 PF11261 IRF-2BP1_2: Interfero 27.6 38 0.00083 26.8 1.5 31 77-107 18-49 (54)
234 cd00019 AP2Ec AP endonuclease 27.5 61 0.0013 33.7 3.6 57 56-116 85-144 (279)
235 PF07488 Glyco_hydro_67M: Glyc 27.5 5.2E+02 0.011 28.2 10.3 140 53-215 54-193 (328)
236 KOG3698 Hyaluronoglucosaminida 27.5 1.2E+02 0.0027 35.3 6.0 74 36-117 11-96 (891)
237 COG1082 IolE Sugar phosphate i 27.2 6.7E+02 0.014 25.4 11.9 128 54-215 13-144 (274)
238 PRK06703 flavodoxin; Provision 27.2 3.2E+02 0.007 25.5 8.2 100 36-163 46-148 (151)
239 PRK04302 triosephosphate isome 27.1 1.3E+02 0.0028 30.6 5.7 60 48-117 62-123 (223)
240 TIGR03128 RuMP_HxlA 3-hexulose 27.0 1.3E+02 0.0029 29.7 5.8 41 61-114 68-108 (206)
241 PF04566 RNA_pol_Rpb2_4: RNA p 26.4 56 0.0012 26.8 2.4 12 513-524 1-12 (63)
242 cd00544 CobU Adenosylcobinamid 26.4 4.2E+02 0.009 25.8 9.0 49 151-207 101-149 (169)
243 PF00337 Gal-bind_lectin: Gala 26.3 1.1E+02 0.0023 28.2 4.6 30 495-524 80-109 (133)
244 PRK01904 hypothetical protein; 26.2 79 0.0017 32.4 4.0 38 1-41 1-40 (219)
245 COG2179 Predicted hydrolase of 26.2 1.3E+02 0.0028 29.9 5.1 45 61-114 19-68 (175)
246 KOG3833 Uncharacterized conser 25.9 78 0.0017 34.3 3.9 53 57-115 444-499 (505)
247 COG2108 Uncharacterized conser 25.8 1.1E+02 0.0023 33.5 4.9 49 58-115 123-171 (353)
248 KOG0470 1,4-alpha-glucan branc 25.3 69 0.0015 38.3 3.7 52 59-115 258-331 (757)
249 cd06594 GH31_glucosidase_YihQ 25.3 1.8E+02 0.004 31.3 6.8 68 54-121 21-97 (317)
250 PF00121 TIM: Triosephosphate 25.1 52 0.0011 34.2 2.5 51 60-116 75-125 (244)
251 PF13380 CoA_binding_2: CoA bi 24.6 1.2E+02 0.0026 27.7 4.5 44 53-112 63-106 (116)
252 PRK10966 exonuclease subunit S 24.6 4.9E+02 0.011 29.1 10.2 84 41-137 42-135 (407)
253 PLN02389 biotin synthase 24.5 98 0.0021 34.4 4.6 46 58-111 177-229 (379)
254 cd00070 GLECT Galectin/galacto 24.2 1.2E+02 0.0026 27.8 4.5 29 496-524 76-104 (127)
255 KOG4039 Serine/threonine kinas 23.9 1.4E+02 0.003 30.2 4.9 26 50-75 103-128 (238)
256 TIGR01361 DAHP_synth_Bsub phos 23.8 1.9E+02 0.0042 30.3 6.5 82 25-115 12-96 (260)
257 cd02810 DHOD_DHPD_FMN Dihydroo 23.8 1.4E+02 0.0031 31.2 5.5 60 54-117 109-171 (289)
258 PLN02540 methylenetetrahydrofo 23.8 2E+02 0.0043 33.8 7.0 90 61-164 161-259 (565)
259 PTZ00372 endonuclease 4-like p 23.6 1.1E+03 0.024 26.7 13.2 54 58-119 143-202 (413)
260 PRK10426 alpha-glucosidase; Pr 23.5 7.2E+02 0.016 29.7 11.8 65 57-121 222-295 (635)
261 cd06569 GH20_Sm-chitobiase-lik 23.4 1.7E+02 0.0036 33.3 6.3 73 30-115 6-117 (445)
262 PRK09860 putative alcohol dehy 23.2 2.1E+02 0.0046 31.6 7.0 66 38-116 31-96 (383)
263 PRK10658 putative alpha-glucos 23.0 1.8E+02 0.004 34.8 6.8 65 55-121 282-351 (665)
264 cd07944 DRE_TIM_HOA_like 4-hyd 23.0 1.4E+02 0.003 31.4 5.2 45 59-115 85-129 (266)
265 TIGR03551 F420_cofH 7,8-dideme 23.0 70 0.0015 34.7 3.1 49 59-111 141-195 (343)
266 TIGR03700 mena_SCO4494 putativ 22.9 66 0.0014 35.1 2.9 51 58-111 149-204 (351)
267 PF07755 DUF1611: Protein of u 22.7 63 0.0014 34.8 2.6 59 42-115 36-95 (301)
268 KOG0805 Carbon-nitrogen hydrol 22.7 2.7E+02 0.0059 29.3 6.9 74 96-183 38-122 (337)
269 PF10435 BetaGal_dom2: Beta-ga 22.7 2.5E+02 0.0054 28.0 6.7 39 360-398 18-65 (183)
270 smart00276 GLECT Galectin. Gal 22.5 1.3E+02 0.0029 27.7 4.4 30 496-525 75-104 (128)
271 PF07071 DUF1341: Protein of u 22.4 1.5E+02 0.0033 30.2 5.0 46 58-115 137-182 (218)
272 PF02811 PHP: PHP domain; Int 22.4 1.6E+02 0.0036 27.5 5.2 45 57-114 17-61 (175)
273 cd04740 DHOD_1B_like Dihydroor 22.3 1.9E+02 0.0041 30.5 6.1 60 54-117 100-163 (296)
274 PRK01060 endonuclease IV; Prov 22.2 4E+02 0.0086 27.5 8.5 63 53-116 44-111 (281)
275 COG1979 Uncharacterized oxidor 22.2 1.6E+02 0.0034 32.3 5.4 47 58-116 47-93 (384)
276 PF04909 Amidohydro_2: Amidohy 22.0 2.5E+02 0.0054 28.2 6.8 65 43-116 73-138 (273)
277 PRK08227 autoinducer 2 aldolas 22.0 85 0.0019 33.2 3.4 48 60-113 98-145 (264)
278 KOG3625 Alpha amylase [Carbohy 22.0 79 0.0017 38.9 3.3 76 54-138 140-235 (1521)
279 PRK09250 fructose-bisphosphate 21.8 1E+02 0.0022 33.9 4.0 49 61-115 151-199 (348)
280 cd04883 ACT_AcuB C-terminal AC 21.8 2.8E+02 0.0061 22.0 5.8 57 55-112 12-69 (72)
281 PLN02763 hydrolase, hydrolyzin 21.7 2E+02 0.0044 36.0 6.9 74 48-122 190-268 (978)
282 PF02472 ExbD: Biopolymer tran 21.5 1.8E+02 0.0039 26.3 5.2 65 24-111 55-122 (130)
283 PLN02229 alpha-galactosidase 21.3 1.8E+02 0.0039 32.9 5.9 70 50-121 74-156 (427)
284 PRK13361 molybdenum cofactor b 21.3 2.8E+02 0.0061 29.9 7.3 53 58-114 103-160 (329)
285 COG1891 Uncharacterized protei 21.2 34 0.00073 34.0 0.2 65 42-114 117-186 (235)
286 COG3684 LacD Tagatose-1,6-bisp 21.1 77 0.0017 33.5 2.7 52 61-115 116-167 (306)
287 PF08306 Glyco_hydro_98M: Glyc 20.9 74 0.0016 34.5 2.6 89 42-155 104-200 (324)
288 PF03102 NeuB: NeuB family; I 20.7 1.2E+02 0.0026 31.6 4.1 65 52-116 52-121 (241)
289 TIGR00539 hemN_rel putative ox 20.6 1.2E+02 0.0027 33.0 4.5 48 59-110 100-151 (360)
290 PRK12399 tagatose 1,6-diphosph 20.5 1.2E+02 0.0027 32.9 4.2 62 52-115 101-162 (324)
291 COG2876 AroA 3-deoxy-D-arabino 20.5 3.1E+02 0.0068 29.2 7.0 58 54-115 57-116 (286)
292 cd07944 DRE_TIM_HOA_like 4-hyd 20.3 1.8E+02 0.0039 30.5 5.4 65 52-116 16-81 (266)
293 PLN02231 alanine transaminase 20.3 2.9E+02 0.0063 32.1 7.6 59 52-114 252-310 (534)
294 PRK13791 lysozyme inhibitor; P 20.3 2.3E+02 0.005 26.2 5.4 18 1-18 2-19 (113)
295 cd00958 DhnA Class I fructose- 20.2 1.2E+02 0.0026 30.8 3.9 63 47-115 66-129 (235)
296 TIGR02804 ExbD_2 TonB system t 20.1 6.3E+02 0.014 23.0 8.4 15 96-110 99-113 (121)
No 1
>PLN03059 beta-galactosidase; Provisional
Probab=100.00 E-value=2.2e-171 Score=1454.93 Aligned_cols=618 Identities=61% Similarity=1.071 Sum_probs=583.3
Q ss_pred CCeeEEEecCcEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHH
Q 006249 23 FGANVTYDHRAVVIGGKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVK 102 (654)
Q Consensus 23 ~~~~v~~d~~~~~idG~p~~~~sG~iHy~R~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~ 102 (654)
...+|+||+++|+|||||++|+||+|||||+||++|+|+|+||||+|+|||+||||||+|||+||+|||+|++||++||+
T Consensus 26 ~~~~v~~d~~~f~idG~p~~i~sG~iHY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~~Fl~ 105 (840)
T PLN03059 26 GSASVSYDHRAFIINGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVKFIK 105 (840)
T ss_pred ceeEEEEeCCEEEECCEEEEEEEeCcccCcCCHHHHHHHHHHHHHcCCCeEEEEecccccCCCCCeeeccchHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCcEEEEecCcccccccCCCCCCcccccCCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccc
Q 006249 103 LVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIEN 182 (654)
Q Consensus 103 la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QIEN 182 (654)
+|+|+||||||||||||||||++||+|.||+++|+|++|++||+|+++|++|+++|+++|++++|++++||||||+||||
T Consensus 106 la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIEN 185 (840)
T PLN03059 106 VVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIEN 185 (840)
T ss_pred HHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred cccccccccCcccHHHHHHHHHHHhhcCCCcceEEccCCCCCCccccCCCCcccCCcCCCCCCCCceecccccccccccC
Q 006249 183 EYGNIDSAYGAAGKSYIKWAAGMALSLDTGVPWVMCQQSDAPDPIINTCNGFYCDQFTPNSNNKPKMWTENWSGWFLSFG 262 (654)
Q Consensus 183 Eyg~~~~~~g~~~~~y~~~l~~~~~~~g~~vP~~~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~P~~~~E~~~gwf~~wG 262 (654)
|||++.++++.+|++||+||++|++++|++|||+||++.+++++++++|||.+|+.|.+.++.+|+||||||+|||++||
T Consensus 186 EYGs~~~~~~~~d~~Yl~~l~~~~~~~Gi~VPl~t~dg~~~~~~v~~t~Ng~~~~~f~~~~~~~P~m~tE~w~GWf~~wG 265 (840)
T PLN03059 186 EYGPVEWEIGAPGKAYTKWAADMAVKLGTGVPWVMCKQEDAPDPVIDTCNGFYCENFKPNKDYKPKMWTEAWTGWYTEFG 265 (840)
T ss_pred cccceecccCcchHHHHHHHHHHHHHcCCCcceEECCCCCCCccceecCCCchhhhcccCCCCCCcEEeccCchhHhhcC
Confidence 99998777777899999999999999999999999999888889999999999999988888899999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCeeeeeeeeecCCCCCCCCCCCCccccccCCCCCCCCCCCCChhhHHHHHHHHHHHhh
Q 006249 263 GAVPYRPVEDLAFAVARFFQRGGTFQNYYMYHGGTNFDRTSGGPFISTSYDYDAPLDEYGLIRQPKWGHLKDLHKAIKLC 342 (654)
Q Consensus 263 ~~~~~r~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~~~~~tSYDy~Apl~E~G~~~~pky~~lr~l~~~i~~~ 342 (654)
+++++|+++|+|+.++++|++|+|++||||||||||||+|+|+++++|||||||||+|+|++++|||.+||++|++++.+
T Consensus 266 ~~~~~r~~~d~a~~~~~~l~~g~S~~N~YMfhGGTNFG~~~Ga~~~~TSYDYdAPL~E~G~~t~pKy~~lr~l~~~~~~~ 345 (840)
T PLN03059 266 GAVPNRPAEDLAFSVARFIQNGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLPREPKWGHLRDLHKAIKLC 345 (840)
T ss_pred CCCCcCCHHHHHHHHHHHHHcCCeeEEeeeccCcCCcccccCCCccccccccCCccccccCcchhHHHHHHHHHHHHHhc
Confidence 99999999999999999999999988999999999999999999999999999999999999778999999999999999
Q ss_pred hhcccCCCCCCCCCCCCceeEEEecCCCceeEEEeecCCcceeEEEECCeEEeecCceEEecCCCCeeeeeceeeccccc
Q 006249 343 EAALVATDPTYPSLGPNLEATVYKTGSGLCSAFLANIGTNSDVTVKFNGNSYLLPAWSVSILPDCKNVVFNTAKINSVTL 422 (654)
Q Consensus 343 ~~~l~~~~p~~~~~g~~~~~~~y~~~~~~~~~Fl~N~~~~~~~~v~~~~~~~~~p~~sv~il~~~~~v~f~Ta~v~~q~~ 422 (654)
+++|+..+|....||+++++++|...+ .|++|+.|++++.+.+|+|+|++|.||+|||||||||++++|||++|++|++
T Consensus 346 ~~~l~~~~p~~~~lg~~~ea~~y~~~~-~caaFl~n~~~~~~~~v~f~g~~y~lp~~Svsilpd~~~~lfnta~v~~q~~ 424 (840)
T PLN03059 346 EPALVSVDPTVTSLGSNQEAHVFKSKS-ACAAFLANYDTKYSVKVTFGNGQYDLPPWSVSILPDCKTAVFNTARLGAQSS 424 (840)
T ss_pred CccccCCCCceeccCCceeEEEccCcc-chhhheeccCCCCceeEEECCcccccCccceeecccccceeeeccccccccc
Confidence 999998888888999999999998666 7999999999999999999999999999999999999999999999999987
Q ss_pred ccccccccccccccccCccCCCccccccc-cccCCCCCcCCCchhhhhcCCCCCcceEEEEEEeccCCCcccccCCCceE
Q 006249 423 VPSFSRQSLQVAADSSDAIGSGWSYINEP-VGISKDDAFTKPGLLEQINTTADQSDYLWYSLSTNIKADEPLLEDGSKTV 501 (654)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~w~~~~e~-~~~~~~~~~~~p~~~Eqlg~T~d~~GyvWYrT~i~~~~~~~~~~~g~~~~ 501 (654)
.+++.+. ...+.|++++|+ ++..+..+++...++||+++|+|.+||+||||+|.+..++.+++.+.+++
T Consensus 425 ~~~~~~~----------~~~~~w~~~~e~~~~~~~~~~~~~e~l~e~~n~t~d~~dYlwY~t~i~~~~~~~~~~~~~~~~ 494 (840)
T PLN03059 425 QMKMNPV----------GSTFSWQSYNEETASAYTDDTTTMDGLWEQINVTRDATDYLWYMTEVHIDPDEGFLKTGQYPV 494 (840)
T ss_pred eeecccc----------cccccceeecccccccccCCCcchhhHHHhhcccCCCCceEEEEEEEeecCCccccccCCCce
Confidence 7654322 345699999999 55555678888999999999999999999999999987665556778899
Q ss_pred EEEccccceEEEEECCEEEEEEEcCcCCceEEEecccccCCCccEEEEEEeecCcccccCCccccccceecceEEeccCC
Q 006249 502 LHVQSLGHALHAFINGKLVGSGYGSSSNAKVTVDFPIALAPGKNTFDLLSLTVGLQNYGAFYEKTGAGITGPVQLKGSGN 581 (654)
Q Consensus 502 L~l~~~~d~~~VfVNG~~vGt~~g~~~~~~~~~~~~v~Lk~G~N~L~ILv~n~Gr~NyG~~~e~~~kGI~g~V~L~g~~~ 581 (654)
|+|.+++|++||||||+++|+.++......++++.++.|+.|.|+|+|||+||||+|||++||++.|||.|+|+|.+++.
T Consensus 495 L~v~~~~d~~~vFVNg~~~Gt~~~~~~~~~~~~~~~v~l~~g~n~L~iLse~vG~~NyG~~le~~~kGI~g~V~i~g~~~ 574 (840)
T PLN03059 495 LTIFSAGHALHVFINGQLAGTVYGELSNPKLTFSQNVKLTVGINKISLLSVAVGLPNVGLHFETWNAGVLGPVTLKGLNE 574 (840)
T ss_pred EEEcccCcEEEEEECCEEEEEEEeecCCcceEEecccccCCCceEEEEEEEeCCCCccCcccccccccccccEEEecccC
Confidence 99999999999999999999999988888899999999999999999999999999999999999999999999999877
Q ss_pred CceecCCCCCeeEEeecccccccC--CC-CCCCCcccCCCCCCCCCeeEEEEeeeccCccc-ceeeccccccccc
Q 006249 582 GTNIDLSSQQWTYQTGLKGEELNF--PS-GSSTQWDSKSTLPKLQPLVWYKVIFIFHYIFY-SVHQLKDLNVGIK 652 (654)
Q Consensus 582 g~~~dLs~~~W~Ykvgl~GE~~~i--~~-~~~v~W~~~~~~~~~~~ltWYKt~F~~p~~~~-~~~~~~~~~~g~~ 652 (654)
| ++||++.+|.|+++|.||.++| .+ ..+++|.+.+..++++|+||||++|++|.+.| ++|||.|||||+.
T Consensus 575 g-~~dls~~~W~y~lgL~GE~~~i~~~~~~~~~~W~~~~~~~~~~p~twYK~~Fd~p~g~Dpv~LDm~gmGKG~a 648 (840)
T PLN03059 575 G-TRDLSGWKWSYKIGLKGEALSLHTITGSSSVEWVEGSLLAQKQPLTWYKTTFDAPGGNDPLALDMSSMGKGQI 648 (840)
T ss_pred C-ceecccCccccccCccceeccccccCCCCCccccccccccCCCCceEEEEEEeCCCCCCCEEEecccCCCeeE
Confidence 7 8899999999999999999988 33 67899988877778899999999999999999 6999999999974
No 2
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.6e-143 Score=1179.41 Aligned_cols=562 Identities=59% Similarity=1.041 Sum_probs=525.8
Q ss_pred CeeEEEecCcEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHH
Q 006249 24 GANVTYDHRAVVIGGKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKL 103 (654)
Q Consensus 24 ~~~v~~d~~~~~idG~p~~~~sG~iHy~R~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~l 103 (654)
.+.|+||+++|++||+|++++||+|||||++|++|+|+|+|||++|+|+|+||||||.|||+||+|||+|+.||++||++
T Consensus 17 ~~~v~yd~~~~~idG~r~~~isGsIHY~R~~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~g~y~FsG~~DlvkFikl 96 (649)
T KOG0496|consen 17 SFNVTYDKRSLLIDGQRFILISGSIHYPRSTPEMWPDLIKKAKAGGLNVIQTYVFWNLHEPSPGKYDFSGRYDLVKFIKL 96 (649)
T ss_pred eeEEeccccceeecCCeeEEEEeccccccCChhhhHHHHHHHHhcCCceeeeeeecccccCCCCcccccchhHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCcEEEEecCcccccccCCCCCCcccccCCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeeccccc
Q 006249 104 VAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENE 183 (654)
Q Consensus 104 a~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QIENE 183 (654)
|++.||||+||+||||||||++||+|.||..+|++.+||+|++|+++|++|+++|+++|| +|+++|||||||+|||||
T Consensus 97 ~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk--~L~~~qGGPIIl~QIENE 174 (649)
T KOG0496|consen 97 IHKAGLYVILRIGPYICAEWNFGGLPWWLRNVPGIVFRTDNEPFKAEMERWTTKIVPMMK--KLFASQGGPIILVQIENE 174 (649)
T ss_pred HHHCCeEEEecCCCeEEecccCCCcchhhhhCCceEEecCChHHHHHHHHHHHHHHHHHH--HHHhhcCCCEEEEEeech
Confidence 999999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred ccccccccCcccHHHHHHHHHHHhhcCCCcceEEccCCCCCCccccCCCCccc-CCcC-CCCCCCCceeccccccccccc
Q 006249 184 YGNIDSAYGAAGKSYIKWAAGMALSLDTGVPWVMCQQSDAPDPIINTCNGFYC-DQFT-PNSNNKPKMWTENWSGWFLSF 261 (654)
Q Consensus 184 yg~~~~~~g~~~~~y~~~l~~~~~~~g~~vP~~~~~~~~~~~~~~~~~ng~~~-~~~~-~~~~~~P~~~~E~~~gwf~~w 261 (654)
||.+...|++.+++|++|.+.|+...+.+|||+||++.++|++++++|||.+| +.|. +++|++|+||||+|+|||++|
T Consensus 175 YG~~~~~~~~~~k~y~~w~a~m~~~l~~gvpw~mCk~~dapd~~in~cng~~c~~~f~~pn~~~kP~~wtE~wtgwf~~w 254 (649)
T KOG0496|consen 175 YGNYLRALGAEGKSYLKWAAVLATSLGTGVPWVMCKQDDAPDPGINTCNGFYCGDTFKRPNSPNKPLVWTENWTGWFTHW 254 (649)
T ss_pred hhHHHHHHHHHHHHhhccceEEEEecCCCCceeEecCCCCCCccccccCCccchhhhccCCCCCCCceecccccchhhhh
Confidence 99988888999999999999999999999999999999999999999999999 9998 999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCeeeeeeeeecCCCCCCCCCCCCccccccCCCCCCCCCCCCChhhHHHHHHHHHHHh
Q 006249 262 GGAVPYRPVEDLAFAVARFFQRGGTFQNYYMYHGGTNFDRTSGGPFISTSYDYDAPLDEYGLIRQPKWGHLKDLHKAIKL 341 (654)
Q Consensus 262 G~~~~~r~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~~~~~tSYDy~Apl~E~G~~~~pky~~lr~l~~~i~~ 341 (654)
|++.+.|++||+|..+++|+++|+|++||||||||||||++|| ++.+|||||||||| |..++|||+|+|.+|..++.
T Consensus 255 Gg~~~~R~~e~ia~~va~fls~ggs~vNyYM~hGGTNFGrt~G-~~~atsy~~dap~d--gl~~~pk~ghlk~~hts~d~ 331 (649)
T KOG0496|consen 255 GGPHPCRPVEDIALSVARFLSKGGSSVNYYMYHGGTNFGRTNG-PFIATSYDYDAPLD--GLLRQPKYGHLKPLHTSYDY 331 (649)
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCccceEEEEeecccCCCcccC-cccccccccccccc--hhhcCCCccccccchhhhhh
Confidence 9999999999999999999999999999999999999999998 99999999999999 99999999999999999999
Q ss_pred hhhcccCCCCCCCCCCCCceeEEEecCCCceeEEEeecCCcceeEEEECCeEEeecCceEEecCCCCeeeeeceeecccc
Q 006249 342 CEAALVATDPTYPSLGPNLEATVYKTGSGLCSAFLANIGTNSDVTVKFNGNSYLLPAWSVSILPDCKNVVFNTAKINSVT 421 (654)
Q Consensus 342 ~~~~l~~~~p~~~~~g~~~~~~~y~~~~~~~~~Fl~N~~~~~~~~v~~~~~~~~~p~~sv~il~~~~~v~f~Ta~v~~q~ 421 (654)
|++.+..+++....+|+.+++ |.+|++|++......+.|++..|.+|++||+|+|||++++|||++|.+|
T Consensus 332 ~ep~lv~gd~~~~kyg~~~~~---------C~~Fl~n~~~~~~~~v~f~~~~y~~~~~slsilpdck~~~~nta~~~~~- 401 (649)
T KOG0496|consen 332 CEPALVAGDITTAKYGNLREA---------CAAFLSNNNGAPAAPVPFNKPKYRLPPWSLSILPDCKTVVYNTAKVMAQ- 401 (649)
T ss_pred cCccccccCcccccccchhhH---------HHHHHhcCCCCCCCccccCCCccccCceeEEechhhcchhhhccccccc-
Confidence 999999998777776665544 9999999999999999999999999999999999999999999966433
Q ss_pred cccccccccccccccccCccCCCccccccccccCCCCCcCCCchhhhhcCCCCCcceEEEEEEeccCCCcccccCCCceE
Q 006249 422 LVPSFSRQSLQVAADSSDAIGSGWSYINEPVGISKDDAFTKPGLLEQINTTADQSDYLWYSLSTNIKADEPLLEDGSKTV 501 (654)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~e~~~~~~~~~~~~p~~~Eqlg~T~d~~GyvWYrT~i~~~~~~~~~~~g~~~~ 501 (654)
|....||++. |..++ ..|++.|++.++-+..+ .+.
T Consensus 402 -----------------------~~~~~e~~~~------------~~~~~---~~~~ll~~~~~t~d~sd-------~t~ 436 (649)
T KOG0496|consen 402 -----------------------WISFTEPIPS------------EAVGQ---SFGGLLEQTNLTKDKSD-------TTS 436 (649)
T ss_pred -----------------------cccccCCCcc------------ccccC---cceEEEEEEeeccccCC-------Cce
Confidence 5666777653 33344 66788888887654332 346
Q ss_pred EEEc-cccceEEEEECCEEEEEEEcCcCCceEEEecccccCCCccEEEEEEeecCcccccCCccccccceecceEEeccC
Q 006249 502 LHVQ-SLGHALHAFINGKLVGSGYGSSSNAKVTVDFPIALAPGKNTFDLLSLTVGLQNYGAFYEKTGAGITGPVQLKGSG 580 (654)
Q Consensus 502 L~l~-~~~d~~~VfVNG~~vGt~~g~~~~~~~~~~~~v~Lk~G~N~L~ILv~n~Gr~NyG~~~e~~~kGI~g~V~L~g~~ 580 (654)
|+|. +++|++||||||+++|+.++......+.+..++.|+.|.|+|+|||+|+||+||| +||++.+||+|+|.|.+
T Consensus 437 ~~i~ls~g~~~hVfvNg~~~G~~~g~~~~~~~~~~~~~~l~~g~n~l~iL~~~~G~~n~G-~~e~~~~Gi~g~v~l~g-- 513 (649)
T KOG0496|consen 437 LKIPLSLGHALHVFVNGEFAGSLHGNNEKIKLNLSQPVGLKAGENKLALLSENVGLPNYG-HFENDFKGILGPVYLNG-- 513 (649)
T ss_pred EeecccccceEEEEECCEEeeeEeccccceeEEeecccccccCcceEEEEEEecCCCCcC-cccccccccccceEEee--
Confidence 8888 9999999999999999999998888899999999999999999999999999999 99999999999999987
Q ss_pred CCceecCCCCCeeEEeecccccccC--CC-CCCCCcccCCCCCCCCCeeEEEEeeeccCcccc-eeeccccccccc
Q 006249 581 NGTNIDLSSQQWTYQTGLKGEELNF--PS-GSSTQWDSKSTLPKLQPLVWYKVIFIFHYIFYS-VHQLKDLNVGIK 652 (654)
Q Consensus 581 ~g~~~dLs~~~W~Ykvgl~GE~~~i--~~-~~~v~W~~~~~~~~~~~ltWYKt~F~~p~~~~~-~~~~~~~~~g~~ 652 (654)
.+||+..+|.|++|+.||.+.+ .. +++|+|...+..++++|+|||| +|+.|.+.+. +|||.|+|||+.
T Consensus 514 ---~~~l~~~~w~~~~gl~ge~~~~~~~~~~~~v~w~~~~~~~~k~P~~w~k-~f~~p~g~~~t~Ldm~g~GKG~v 585 (649)
T KOG0496|consen 514 ---LIDLTWTKWPYKVGLKGEKLGLHTEEGSSKVKWKKLSNTATKQPLTWYK-TFDIPSGSEPTALDMNGWGKGQV 585 (649)
T ss_pred ---eeccceeecceecccccchhhccccccccccceeeccCcccCCCeEEEE-EecCCCCCCCeEEecCCCcceEE
Confidence 3789889999999999999888 44 8899999998777779999999 9999999995 999999999985
No 3
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=100.00 E-value=3.4e-91 Score=740.89 Aligned_cols=297 Identities=41% Similarity=0.781 Sum_probs=232.4
Q ss_pred cEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEE
Q 006249 33 AVVIGGKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAH 112 (654)
Q Consensus 33 ~~~idG~p~~~~sG~iHy~R~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vi 112 (654)
+|+|||||++|+|||+||+|+||++|+|+|+||||+|||||+||||||+|||+||+|||+|++||++||++|+|+||+||
T Consensus 1 ~~~~~g~~~~~~~Ge~hy~r~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vi 80 (319)
T PF01301_consen 1 SFLIDGKPFFILSGEFHYFRIPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVI 80 (319)
T ss_dssp CEEETTEEE-EEEEEE-GGGS-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEE
T ss_pred CeEECCEEEEEEEeeeccccCChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCcccccccCCCCCCcccccCCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccccccccC
Q 006249 113 LRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSAYG 192 (654)
Q Consensus 113 lr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QIENEyg~~~~~~g 192 (654)
|||||||||||++||+|.||.+++++++|++||.|+++|++|+++|+++|+ ++++++||||||+|||||||..
T Consensus 81 lrpGpyi~aE~~~gG~P~Wl~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~--~~~~~~GGpII~vQvENEyg~~----- 153 (319)
T PF01301_consen 81 LRPGPYICAEWDNGGLPAWLLRKPDIRLRTNDPPFLEAVERWYRALAKIIK--PLQYTNGGPIIMVQVENEYGSY----- 153 (319)
T ss_dssp EEEES---TTBGGGG--GGGGGSTTS-SSSS-HHHHHHHHHHHHHHHHHHG--GGBGGGTSSEEEEEESSSGGCT-----
T ss_pred ecccceecccccchhhhhhhhccccccccccchhHHHHHHHHHHHHHHHHH--hhhhcCCCceehhhhhhhhCCC-----
Confidence 999999999999999999999999999999999999999999999999999 8999999999999999999953
Q ss_pred cccHHHHHHHHHHHhhcCCC-cceEEccCCC--------CCCccccCCCCcccCC--------cCCCCCCCCceeccccc
Q 006249 193 AAGKSYIKWAAGMALSLDTG-VPWVMCQQSD--------APDPIINTCNGFYCDQ--------FTPNSNNKPKMWTENWS 255 (654)
Q Consensus 193 ~~~~~y~~~l~~~~~~~g~~-vP~~~~~~~~--------~~~~~~~~~ng~~~~~--------~~~~~~~~P~~~~E~~~ 255 (654)
.++++|++.|++++++.|++ ++.++++... .++..+.+++++.|.. ....+|++|+|++|+|+
T Consensus 154 ~~~~~Y~~~l~~~~~~~g~~~~~~~t~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~P~~~~E~~~ 233 (319)
T PF01301_consen 154 GTDRAYMEALKDAYRDWGIDPVLLYTTDGPWGSWLPDGGLPGADIYATDNFPPGDNPDEYFGDQRSFQPNQPLMCTEFWG 233 (319)
T ss_dssp SS-HHHHHHHHHHHHHTT-SSSBEEEEESSSHCCHCCC-TTTGSCEEEEEETTTSSHHHHHHHHHHHHTTS--EEEEEES
T ss_pred cccHhHHHHHHHHHHHhhCccceeeccCCCcccccccCCCCcceEEeccccCCCchHHHHHhhhhhcCCCCCeEEEEecc
Confidence 37899999999999999998 6677776531 2333344455555522 12456889999999999
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHcCCeeeeeeeeecCCCCCCCCCCCCc----cccccCCCCCCCCCCCCChhhHH
Q 006249 256 GWFLSFGGAVPYRPVEDLAFAVARFFQRGGTFQNYYMYHGGTNFDRTSGGPFI----STSYDYDAPLDEYGLIRQPKWGH 331 (654)
Q Consensus 256 gwf~~wG~~~~~r~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~~~~----~tSYDy~Apl~E~G~~~~pky~~ 331 (654)
|||++||++++.+++++++..+++++++|.+ +||||||||||||+++|++.. +|||||+|||+|+|+++ |||++
T Consensus 234 Gwf~~WG~~~~~~~~~~~~~~l~~~l~~g~~-~nyYM~hGGTNfG~~~ga~~~~~p~~TSYDY~ApI~E~G~~~-~Ky~~ 311 (319)
T PF01301_consen 234 GWFDHWGGPHYTRPAEDVAADLARMLSKGNS-LNYYMFHGGTNFGFWAGANYYGQPDITSYDYDAPIDEYGQLT-PKYYE 311 (319)
T ss_dssp S---BTTS--HHHHHHHHHHHHHHHHHHCSE-EEEEECE--B--TT-B-EETTTEEB-SB--TT-SB-TTS-B--HHHHH
T ss_pred ccccccCCCCccCCHHHHHHHHHHHHHhhcc-cceeeccccCCccccccCCCCCCCCcccCCcCCccCcCCCcC-HHHHH
Confidence 9999999999999999999999999999955 799999999999999887654 49999999999999995 99999
Q ss_pred HHHHHHH
Q 006249 332 LKDLHKA 338 (654)
Q Consensus 332 lr~l~~~ 338 (654)
||+||++
T Consensus 312 lr~l~~~ 318 (319)
T PF01301_consen 312 LRRLHQK 318 (319)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9999874
No 4
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.1e-36 Score=339.69 Aligned_cols=290 Identities=23% Similarity=0.324 Sum_probs=215.6
Q ss_pred EEEecCcEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEE-cccCCCCCCCCceeeccccchHHHHHHHHH
Q 006249 27 VTYDHRAVVIGGKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIET-YVFWNLHEPVRNQYNFEGRYDLVKFVKLVA 105 (654)
Q Consensus 27 v~~d~~~~~idG~p~~~~sG~iHy~R~~~~~W~~~l~k~Ka~G~N~V~t-yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~ 105 (654)
|.+++..+++||+|++++||++||+|+|++.|.|+|++||++|+|+|++ |+.||.|||++|+|||+ .+|+. ||++|+
T Consensus 1 ~~~~~~~~~~dg~~~~l~gG~y~p~~~p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~fdf~-~~D~~-~l~~a~ 78 (673)
T COG1874 1 VSYDGYSFIRDGRRILLYGGDYYPERWPRETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGKFDFT-WLDEI-FLERAY 78 (673)
T ss_pred CcccccceeeCCceeEEeccccChHHCCHHHHHHHHHHHHHhCCCeeEeeeEEeeccCccccccCcc-cchHH-HHHHHH
Confidence 3578889999999999999999999999999999999999999999999 99999999999999999 88888 999999
Q ss_pred HcCcEEEEecCc-ccccccCCCCCCcccccCCCeee---------ecCChhHHHHHHHHHHHHHHHHHhcccccccCCce
Q 006249 106 EAGLYAHLRIGP-YVCAEWNFGGFPLWLHFIPGIQF---------RTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPI 175 (654)
Q Consensus 106 ~~GL~Vilr~GP-yi~aEw~~GG~P~WL~~~p~~~~---------R~~d~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpI 175 (654)
+.||+||||||| ..|.+|..++.|+||..++.-.. ..++|-|++++++.++.|.+++ +.+|++|
T Consensus 79 ~~Gl~vil~t~P~g~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~------~~~~~~v 152 (673)
T COG1874 79 KAGLYVILRTGPTGAPPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERL------YGNGPAV 152 (673)
T ss_pred hcCceEEEecCCCCCCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHH------hccCCce
Confidence 999999999999 99999999999999987664322 3456778887777444444433 4789999
Q ss_pred EeecccccccccccccCcccHHHHHHHHHHHhhc-CCCcceEEccCC-CCCC-ccccCCC-----Cccc--CCcCCCCCC
Q 006249 176 ILSQIENEYGNIDSAYGAAGKSYIKWAAGMALSL-DTGVPWVMCQQS-DAPD-PIINTCN-----GFYC--DQFTPNSNN 245 (654)
Q Consensus 176 I~~QIENEyg~~~~~~g~~~~~y~~~l~~~~~~~-g~~vP~~~~~~~-~~~~-~~~~~~n-----g~~~--~~~~~~~~~ 245 (654)
|+||++||||++.+.+..|...+..||++-+-.+ ..+-+|=+.--+ +..+ ..|.+.+ +... -+|......
T Consensus 153 ~~w~~dneY~~~~~~~~~~~~~f~~wLk~~yg~l~~ln~~w~t~~ws~t~~~~~~i~~p~~~~e~~~~~~~ld~~~f~~e 232 (673)
T COG1874 153 ITWQNDNEYGGHPCYCDYCQAAFRLWLKKGYGSLDNLNEAWGTSFWSHTYKDFDEIMSPNPFGELPLPGLYLDYRRFESE 232 (673)
T ss_pred eEEEccCccCCccccccccHHHHHHHHHhCcchHHhhhhhhhhhhcccccccHHhhcCCCCccccCCccchhhHhhhhhh
Confidence 9999999999965555668888999999877321 122333111100 0000 0111111 1100 022222222
Q ss_pred C----Cceecccccccc-cccCCCCCCCC-HHHHHHHHHHHHHcCCeeeeeeeeecCCCCC------CCCCCC---C---
Q 006249 246 K----PKMWTENWSGWF-LSFGGAVPYRP-VEDLAFAVARFFQRGGTFQNYYMYHGGTNFD------RTSGGP---F--- 307 (654)
Q Consensus 246 ~----P~~~~E~~~gwf-~~wG~~~~~r~-~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG------~~~G~~---~--- 307 (654)
+ +....|.|-+|| +.|..+.-... .+.-++.+++.|..+.+ -||||||+|++|+ +.+|+. +
T Consensus 233 ~~~~~~~~~~~~~~~~~P~~pvt~nl~~~~~~~~~~~~~~~ld~~sw-dny~~~~~~~~~~~~~h~l~r~~~~~~~~~~m 311 (673)
T COG1874 233 QILEFVREEGEAIKAYFPNRPVTPNLLAAFKKFDAYKWEKVLDFASW-DNYPAWHRGRDFTKFIHDLFRNGKQGQPFWLM 311 (673)
T ss_pred hhHHHHHHHHHHHHHhCCCCCCChhHhhhhhhcchHHHHHhcChhhh-hhhhhhccccchhhhhHHHHHhhccCCceeec
Confidence 2 566777888888 77766554444 44446667777776655 7999999999999 665654 2
Q ss_pred ----ccccccCCCCCCCCCCCC
Q 006249 308 ----ISTSYDYDAPLDEYGLIR 325 (654)
Q Consensus 308 ----~~tSYDy~Apl~E~G~~~ 325 (654)
..|+|++++.+.+.|..+
T Consensus 312 e~~P~~vn~~~~n~~~~~G~~~ 333 (673)
T COG1874 312 EQLPSVVNWALYNKLKRPGALR 333 (673)
T ss_pred cCCcchhhhhhccCCCCCcccc
Confidence 579999999999999954
No 5
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.83 E-value=2.4e-20 Score=202.97 Aligned_cols=263 Identities=19% Similarity=0.248 Sum_probs=159.4
Q ss_pred eeCCCCCcccHHHHHHHHHHCCCCEEEE-cccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEEecCcccccccCCC
Q 006249 48 IHYPRSTPEMWPDLIQKSKDGGLDVIET-YVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFG 126 (654)
Q Consensus 48 iHy~R~~~~~W~~~l~k~Ka~G~N~V~t-yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~G 126 (654)
+++..++++.|+++|++||++|+|+|++ .+.|+..||+||+|||+ .|+++|++|+++||+|||+.. ..
T Consensus 2 y~pe~~~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~---~lD~~l~~a~~~Gi~viL~~~--------~~ 70 (374)
T PF02449_consen 2 YYPEQWPEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFS---WLDRVLDLAAKHGIKVILGTP--------TA 70 (374)
T ss_dssp --GGGS-CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---H---HHHHHHHHHHCTT-EEEEEEC--------TT
T ss_pred CCcccCCHHHHHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecH---HHHHHHHHHHhccCeEEEEec--------cc
Confidence 4566789999999999999999999996 67799999999999999 899999999999999999985 56
Q ss_pred CCCccccc-CCCeee----------------ecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeeccccccccccc
Q 006249 127 GFPLWLHF-IPGIQF----------------RTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDS 189 (654)
Q Consensus 127 G~P~WL~~-~p~~~~----------------R~~d~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QIENEyg~~~~ 189 (654)
..|.||.+ +|++.. ..++|.|++++++++++|+++++++ ..||+|||+||++...+
T Consensus 71 ~~P~Wl~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~-------p~vi~~~i~NE~~~~~~ 143 (374)
T PF02449_consen 71 APPAWLYDKYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDH-------PAVIGWQIDNEPGYHRC 143 (374)
T ss_dssp TS-HHHHCCSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTT-------TTEEEEEECCSTTCTS-
T ss_pred ccccchhhhcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhcccc-------ceEEEEEeccccCcCcC
Confidence 78999975 676532 1457899999999999998888854 47999999999987422
Q ss_pred ccCcccHHHHHHHHHHHhhc-------CC-------------CcceEEccCCC---------------------------
Q 006249 190 AYGAAGKSYIKWAAGMALSL-------DT-------------GVPWVMCQQSD--------------------------- 222 (654)
Q Consensus 190 ~~g~~~~~y~~~l~~~~~~~-------g~-------------~vP~~~~~~~~--------------------------- 222 (654)
....+.++|.+||++.+... |. ..|.-+.....
T Consensus 144 ~~~~~~~~f~~wLk~kY~ti~~LN~aWgt~~ws~~~~~f~~v~~P~~~~~~~~~~~~~D~~rF~~~~~~~~~~~~~~~ir 223 (374)
T PF02449_consen 144 YSPACQAAFRQWLKEKYGTIEALNRAWGTAFWSQRYSSFDEVPPPRPTSSPENPAQWLDWYRFQSDRVAEFFRWQADIIR 223 (374)
T ss_dssp -SHHHHHHHHHHHHHHHSSHHHHHHHHTTTGGG---SSGGG---S-S-SS---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHhCCHHHHHHHHcCCcccCccCcHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12235667888888877531 11 11211110000
Q ss_pred --CCCccccCCC--Cc---------------------ccC--------Cc----------CCCCCCCCceeccccccccc
Q 006249 223 --APDPIINTCN--GF---------------------YCD--------QF----------TPNSNNKPKMWTENWSGWFL 259 (654)
Q Consensus 223 --~~~~~~~~~n--g~---------------------~~~--------~~----------~~~~~~~P~~~~E~~~gwf~ 259 (654)
.|+. .-+.| +. |.. .. +...+++|.+++|..+| -.
T Consensus 224 ~~~p~~-~vt~n~~~~~~~~~d~~~~a~~~D~~~~d~Y~~~~~~~~~~~~~~~a~~~dl~R~~~~~kpf~v~E~~~g-~~ 301 (374)
T PF02449_consen 224 EYDPDH-PVTTNFMGSWFNGIDYFKWAKYLDVVSWDSYPDGSFDFYDDDPYSLAFNHDLMRSLAKGKPFWVMEQQPG-PV 301 (374)
T ss_dssp HHSTT--EEE-EE-TT---SS-HHHHGGGSSSEEEEE-HHHHHTTTT--TTHHHHHHHHHHHHTTT--EEEEEE--S---
T ss_pred HhCCCc-eEEeCccccccCcCCHHHHHhhCCcceeccccCcccCCCCCCHHHHHHHHHHHHhhcCCCceEeecCCCC-CC
Confidence 0100 00001 10 000 00 01147899999999998 55
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHcCCeeeeeeeeecCCCCCCCCCCCCccccccCCCCCCCCC-CCCChhhHHHHHHHHH
Q 006249 260 SFGGAVPYRPVEDLAFAVARFFQRGGTFQNYYMYHGGTNFDRTSGGPFISTSYDYDAPLDEYG-LIRQPKWGHLKDLHKA 338 (654)
Q Consensus 260 ~wG~~~~~r~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~~~~~tSYDy~Apl~E~G-~~~~pky~~lr~l~~~ 338 (654)
.|+.......+..+....-..++.|+..+.|+-+ ..-.+|.=.. ..+.|+-+| .+ +++|.+++++.+.
T Consensus 302 ~~~~~~~~~~pg~~~~~~~~~~A~Ga~~i~~~~w-r~~~~g~E~~---------~~g~~~~dg~~~-~~~~~e~~~~~~~ 370 (374)
T PF02449_consen 302 NWRPYNRPPRPGELRLWSWQAIAHGADGILFWQW-RQSRFGAEQF---------HGGLVDHDGREP-TRRYREVAQLGRE 370 (374)
T ss_dssp SSSSS-----TTHHHHHHHHHHHTT-S-EEEC-S-B--SSSTTTT---------S--SB-TTS--B--HHHHHHHHHHHH
T ss_pred CCccCCCCCCCCHHHHHHHHHHHHhCCeeEeeec-cCCCCCchhh---------hcccCCccCCCC-CcHHHHHHHHHHH
Confidence 6766555555666666666678999998888765 3333332211 135888999 55 7999999999887
Q ss_pred HHh
Q 006249 339 IKL 341 (654)
Q Consensus 339 i~~ 341 (654)
|+.
T Consensus 371 l~~ 373 (374)
T PF02449_consen 371 LKK 373 (374)
T ss_dssp HHT
T ss_pred Hhc
Confidence 753
No 6
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=99.50 E-value=5.6e-13 Score=140.80 Aligned_cols=192 Identities=20% Similarity=0.268 Sum_probs=125.7
Q ss_pred EEEecCcEEECCEEeEEEEEEeeCCC------CCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHH
Q 006249 27 VTYDHRAVVIGGKRRVLISGSIHYPR------STPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKF 100 (654)
Q Consensus 27 v~~d~~~~~idG~p~~~~sG~iHy~R------~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~f 100 (654)
|++.++.|+|||||++|.+.+.|.+. .+++.|+++|++||++|+|+||+ .++.+.| +|
T Consensus 1 vev~~~~~~lNGk~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~----~h~p~~~------------~~ 64 (298)
T PF02836_consen 1 VEVKDGGFYLNGKPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRT----HHYPPSP------------RF 64 (298)
T ss_dssp EEEETTEEEETTEEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEE----TTS--SH------------HH
T ss_pred CEEECCEEEECCEEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEc----ccccCcH------------HH
Confidence 67899999999999999999999753 47889999999999999999999 3333344 99
Q ss_pred HHHHHHcCcEEEEecCcccccccCCCCCCcccccCCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecc
Q 006249 101 VKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQI 180 (654)
Q Consensus 101 l~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QI 180 (654)
+++|.++||.|+..+.=.-++.|..-|.. .....||.+.+.+.+-+++++.+.++ ++.||+|-+
T Consensus 65 ~~~cD~~GilV~~e~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~v~~~~N-------HPSIi~W~~ 128 (298)
T PF02836_consen 65 YDLCDELGILVWQEIPLEGHGSWQDFGNC---------NYDADDPEFRENAEQELREMVRRDRN-------HPSIIMWSL 128 (298)
T ss_dssp HHHHHHHT-EEEEE-S-BSCTSSSSTSCT---------SCTTTSGGHHHHHHHHHHHHHHHHTT--------TTEEEEEE
T ss_pred HHHHhhcCCEEEEeccccccCccccCCcc---------ccCCCCHHHHHHHHHHHHHHHHcCcC-------cCchheeec
Confidence 99999999999987621122333322211 24457899988888877777777764 458999999
Q ss_pred cccccccccccCcccHHHHHHHHHHHhhcCCCcceEEccCC-C-CCCccc-cCCCCccc-----CCcC----C--CCCCC
Q 006249 181 ENEYGNIDSAYGAAGKSYIKWAAGMALSLDTGVPWVMCQQS-D-APDPII-NTCNGFYC-----DQFT----P--NSNNK 246 (654)
Q Consensus 181 ENEyg~~~~~~g~~~~~y~~~l~~~~~~~g~~vP~~~~~~~-~-~~~~~~-~~~ng~~~-----~~~~----~--~~~~~ 246 (654)
-||-. ...+++.|.+++++.+.+.|+....+. . ..+... +...+.|. +.+. . ..+++
T Consensus 129 gNE~~---------~~~~~~~l~~~~k~~DptRpv~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~k 199 (298)
T PF02836_consen 129 GNESD---------YREFLKELYDLVKKLDPTRPVTYASNGWDPYVDDIIFDIYSGWYNGYGDPEDFEKYLEDWYKYPDK 199 (298)
T ss_dssp EESSH---------HHHHHHHHHHHHHHH-TTSEEEEETGTSGGSTSSCEECSETTTSSSCCHHHHHHHHHHHHHHHCTS
T ss_pred CccCc---------cccchhHHHHHHHhcCCCCceeecccccccccccccccccccccCCcccHHHHHHHHHhccccCCC
Confidence 99982 346888999999999999987654441 1 111111 11111111 1111 1 35789
Q ss_pred Cceeccccccccc
Q 006249 247 PKMWTENWSGWFL 259 (654)
Q Consensus 247 P~~~~E~~~gwf~ 259 (654)
|++.+||....+.
T Consensus 200 P~i~sEyg~~~~~ 212 (298)
T PF02836_consen 200 PIIISEYGADAYN 212 (298)
T ss_dssp -EEEEEESEBBSS
T ss_pred CeEehhccccccc
Confidence 9999999765544
No 7
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.35 E-value=9e-11 Score=135.75 Aligned_cols=160 Identities=14% Similarity=0.050 Sum_probs=112.7
Q ss_pred eeEEEecCcEEECCEEeEEEEEEeeCCC------CCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHH
Q 006249 25 ANVTYDHRAVVIGGKRRVLISGSIHYPR------STPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLV 98 (654)
Q Consensus 25 ~~v~~d~~~~~idG~p~~~~sG~iHy~R------~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~ 98 (654)
.+|++++..|+|||+|+++.+.+.|... .+++.|+.+|+.||++|+|+||+ .+..+.|
T Consensus 276 R~i~~~~~~f~lNG~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~----sh~p~~~------------ 339 (604)
T PRK10150 276 RSVAVKGGQFLINGKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRT----SHYPYSE------------ 339 (604)
T ss_pred EEEEEeCCEEEECCEEEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEe----ccCCCCH------------
Confidence 4578889999999999999999999552 46788999999999999999999 3333344
Q ss_pred HHHHHHHHcCcEEEEecCcccccccCCCCCCcccc-------c-CCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccc
Q 006249 99 KFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLH-------F-IPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYAS 170 (654)
Q Consensus 99 ~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~-------~-~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~l~~~ 170 (654)
+|+++|.++||+|+.... .. |+..|.. + .+.......+|.+.++..+-+++++.+. .
T Consensus 340 ~~~~~cD~~GllV~~E~p-~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mv~r~-------~ 404 (604)
T PRK10150 340 EMLDLADRHGIVVIDETP-AV-------GLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAIRELIARD-------K 404 (604)
T ss_pred HHHHHHHhcCcEEEEecc-cc-------cccccccccccccccccccccccccchhHHHHHHHHHHHHHHhc-------c
Confidence 899999999999998862 11 1111111 0 1111111244666665555455554444 4
Q ss_pred cCCceEeecccccccccccccCcccHHHHHHHHHHHhhcCCCcceEEcc
Q 006249 171 QGGPIILSQIENEYGNIDSAYGAAGKSYIKWAAGMALSLDTGVPWVMCQ 219 (654)
Q Consensus 171 ~gGpII~~QIENEyg~~~~~~g~~~~~y~~~l~~~~~~~g~~vP~~~~~ 219 (654)
|+..||||-|-||.... .+....+++.|.+.+++.+.+.|+..+.
T Consensus 405 NHPSIi~Ws~gNE~~~~----~~~~~~~~~~l~~~~k~~DptR~vt~~~ 449 (604)
T PRK10150 405 NHPSVVMWSIANEPASR----EQGAREYFAPLAELTRKLDPTRPVTCVN 449 (604)
T ss_pred CCceEEEEeeccCCCcc----chhHHHHHHHHHHHHHhhCCCCceEEEe
Confidence 66799999999997531 1234578889999999999999876543
No 8
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=99.25 E-value=9.8e-11 Score=142.16 Aligned_cols=186 Identities=18% Similarity=0.156 Sum_probs=123.1
Q ss_pred eEEEecCcEEECCEEeEEEEEEeeCC-----C-CCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHH
Q 006249 26 NVTYDHRAVVIGGKRRVLISGSIHYP-----R-STPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVK 99 (654)
Q Consensus 26 ~v~~d~~~~~idG~p~~~~sG~iHy~-----R-~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~ 99 (654)
+|+++++.|+|||+|+++.+.+.|.. | ++++.|+++|+.||++|+|+||+ .+..+.| +
T Consensus 319 ~iei~~~~f~lNGkpi~lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~----sHyP~~~------------~ 382 (1021)
T PRK10340 319 DIKVRDGLFWINNRYVKLHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRT----AHYPNDP------------R 382 (1021)
T ss_pred EEEEECCEEEECCEEEEEEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEe----cCCCCCH------------H
Confidence 47778889999999999999998844 2 47889999999999999999999 4444455 9
Q ss_pred HHHHHHHcCcEEEEecCcccccccCCCCCCcccccCCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeec
Q 006249 100 FVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQ 179 (654)
Q Consensus 100 fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~Q 179 (654)
|+++|.++||+|+... |..|..|..-+ +...-+++|.+.++. .+++.++|+++ +|+..||||-
T Consensus 383 fydlcDe~GllV~dE~-~~e~~g~~~~~---------~~~~~~~~p~~~~~~---~~~~~~mV~Rd----rNHPSIi~Ws 445 (1021)
T PRK10340 383 FYELCDIYGLFVMAET-DVESHGFANVG---------DISRITDDPQWEKVY---VDRIVRHIHAQ----KNHPSIIIWS 445 (1021)
T ss_pred HHHHHHHCCCEEEECC-cccccCccccc---------ccccccCCHHHHHHH---HHHHHHHHHhC----CCCCEEEEEE
Confidence 9999999999999986 33333222101 011123677775543 34444455533 5777999999
Q ss_pred ccccccccccccCcccHHHHHHHHHHHhhcCCCcceEEccCCCCC--CccccCCCCccc--CCcCCCCCCCCceecccc
Q 006249 180 IENEYGNIDSAYGAAGKSYIKWAAGMALSLDTGVPWVMCQQSDAP--DPIINTCNGFYC--DQFTPNSNNKPKMWTENW 254 (654)
Q Consensus 180 IENEyg~~~~~~g~~~~~y~~~l~~~~~~~g~~vP~~~~~~~~~~--~~~~~~~ng~~~--~~~~~~~~~~P~~~~E~~ 254 (654)
+.||-+. | . .++.+.+.+++++-+.|+. +.+.... .+++....+.+. +.+....+++|++.+|+-
T Consensus 446 lGNE~~~-----g---~-~~~~~~~~~k~~DptR~v~-~~~~~~~~~~Dv~~~~Y~~~~~~~~~~~~~~~kP~i~~Ey~ 514 (1021)
T PRK10340 446 LGNESGY-----G---C-NIRAMYHAAKALDDTRLVH-YEEDRDAEVVDVISTMYTRVELMNEFGEYPHPKPRILCEYA 514 (1021)
T ss_pred CccCccc-----c---H-HHHHHHHHHHHhCCCceEE-eCCCcCccccceeccccCCHHHHHHHHhCCCCCcEEEEchH
Confidence 9999753 3 1 2467888888988888764 3332111 122221111111 122233457999999984
No 9
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=99.21 E-value=2.4e-10 Score=138.70 Aligned_cols=149 Identities=16% Similarity=0.144 Sum_probs=109.1
Q ss_pred eEEEecCcEEECCEEeEEEEEEeeCC------CCCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHH
Q 006249 26 NVTYDHRAVVIGGKRRVLISGSIHYP------RSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVK 99 (654)
Q Consensus 26 ~v~~d~~~~~idG~p~~~~sG~iHy~------R~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~ 99 (654)
+|++++..|+|||+|+++.+...|.. +++++.++++|+.||++|+|+||+ .++.+.| +
T Consensus 335 ~iei~~~~f~LNGkpi~lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~----sHyP~~p------------~ 398 (1027)
T PRK09525 335 KVEIENGLLKLNGKPLLIRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRC----SHYPNHP------------L 398 (1027)
T ss_pred EEEEECCEEEECCEEEEEEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEe----cCCCCCH------------H
Confidence 36778889999999999999999943 358899999999999999999999 4555556 9
Q ss_pred HHHHHHHcCcEEEEecCcccccccCCCCCCcccccCCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeec
Q 006249 100 FVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQ 179 (654)
Q Consensus 100 fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~Q 179 (654)
|+++|.++||+|+-...=..|+-+ |.. . -.+||.|.+++. +++.++|+++ +|+..||||-
T Consensus 399 fydlcDe~GilV~dE~~~e~hg~~-----~~~---~-----~~~dp~~~~~~~---~~~~~mV~Rd----rNHPSIi~WS 458 (1027)
T PRK09525 399 WYELCDRYGLYVVDEANIETHGMV-----PMN---R-----LSDDPRWLPAMS---ERVTRMVQRD----RNHPSIIIWS 458 (1027)
T ss_pred HHHHHHHcCCEEEEecCccccCCc-----ccc---C-----CCCCHHHHHHHH---HHHHHHHHhC----CCCCEEEEEe
Confidence 999999999999988631112211 210 0 136777766554 4455555533 5677999999
Q ss_pred ccccccccccccCcccHHHHHHHHHHHhhcCCCcceEEcc
Q 006249 180 IENEYGNIDSAYGAAGKSYIKWAAGMALSLDTGVPWVMCQ 219 (654)
Q Consensus 180 IENEyg~~~~~~g~~~~~y~~~l~~~~~~~g~~vP~~~~~ 219 (654)
+.||-+. + ...+.+.+.+++++-+.|+....
T Consensus 459 lgNE~~~-----g----~~~~~l~~~~k~~DptRpV~y~~ 489 (1027)
T PRK09525 459 LGNESGH-----G----ANHDALYRWIKSNDPSRPVQYEG 489 (1027)
T ss_pred CccCCCc-----C----hhHHHHHHHHHhhCCCCcEEECC
Confidence 9999753 2 12456778888888888876543
No 10
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=99.07 E-value=2.3e-09 Score=126.16 Aligned_cols=120 Identities=21% Similarity=0.283 Sum_probs=96.3
Q ss_pred eeEEEecCcEEECCEEeEEEEEEeeCC-----CC-CcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHH
Q 006249 25 ANVTYDHRAVVIGGKRRVLISGSIHYP-----RS-TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLV 98 (654)
Q Consensus 25 ~~v~~d~~~~~idG~p~~~~sG~iHy~-----R~-~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~ 98 (654)
.+|++++..|.|||||+++-+..-|.+ |. ..+.-+++|++||++|+|+|||- |=|.. .
T Consensus 284 R~iei~~~~~~iNGkpvf~kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRts-----HyP~~-----------~ 347 (808)
T COG3250 284 RTVEIKDGLLLINGKPVFIRGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRTS-----HYPNS-----------E 347 (808)
T ss_pred EEEEEECCeEEECCeEEEEeeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEec-----CCCCC-----------H
Confidence 458889999999999999999999977 34 44448999999999999999993 55543 3
Q ss_pred HHHHHHHHcCcEEEEecCcccccccCCCCCCcccccCCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEee
Q 006249 99 KFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILS 178 (654)
Q Consensus 99 ~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~ 178 (654)
.|++||.++||+||..+ ..||.. .| +||.|++.+..=++++++..+ |+..||||
T Consensus 348 ~~ydLcDelGllV~~Ea----~~~~~~--~~-------------~~~~~~k~~~~~i~~mver~k-------nHPSIiiW 401 (808)
T COG3250 348 EFYDLCDELGLLVIDEA----MIETHG--MP-------------DDPEWRKEVSEEVRRMVERDR-------NHPSIIIW 401 (808)
T ss_pred HHHHHHHHhCcEEEEec----chhhcC--CC-------------CCcchhHHHHHHHHHHHHhcc-------CCCcEEEE
Confidence 99999999999999987 333322 22 788888888776777766666 45589999
Q ss_pred cccccccc
Q 006249 179 QIENEYGN 186 (654)
Q Consensus 179 QIENEyg~ 186 (654)
-+.||-|.
T Consensus 402 s~gNE~~~ 409 (808)
T COG3250 402 SLGNESGH 409 (808)
T ss_pred eccccccC
Confidence 99999875
No 11
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=99.06 E-value=1.2e-09 Score=105.40 Aligned_cols=102 Identities=29% Similarity=0.360 Sum_probs=79.1
Q ss_pred CCCCCcceEEEEEEeccCCCcccccCCCceEEEEccccceEEEEECCEEEEEEEcCcCCceEEEecccccCCCc-cEEEE
Q 006249 471 TTADQSDYLWYSLSTNIKADEPLLEDGSKTVLHVQSLGHALHAFINGKLVGSGYGSSSNAKVTVDFPIALAPGK-NTFDL 549 (654)
Q Consensus 471 ~T~d~~GyvWYrT~i~~~~~~~~~~~g~~~~L~l~~~~d~~~VfVNG~~vGt~~g~~~~~~~~~~~~v~Lk~G~-N~L~I 549 (654)
......|+.|||++|+++++. .++.+.|.++++++.+.|||||++||++.+.+. +|.++..-.|+.|+ |+|+|
T Consensus 62 ~~~~~~~~~wYr~~f~lp~~~----~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~~~--~~~~dIt~~l~~g~~N~l~V 135 (167)
T PF02837_consen 62 ELWDYSGYAWYRRTFTLPADW----KGKRVFLRFEGVDYAAEVYVNGKLVGSHEGGYT--PFEFDITDYLKPGEENTLAV 135 (167)
T ss_dssp CTSTCCSEEEEEEEEEESGGG----TTSEEEEEESEEESEEEEEETTEEEEEEESTTS---EEEECGGGSSSEEEEEEEE
T ss_pred cccccCceEEEEEEEEeCchh----cCceEEEEeccceEeeEEEeCCeEEeeeCCCcC--CeEEeChhhccCCCCEEEEE
Confidence 345689999999999998654 678999999999999999999999999998876 45555556789999 99999
Q ss_pred EEeecCcccccCCc-cccccceecceEEec
Q 006249 550 LSLTVGLQNYGAFY-EKTGAGITGPVQLKG 578 (654)
Q Consensus 550 Lv~n~Gr~NyG~~~-e~~~kGI~g~V~L~g 578 (654)
+|.+.....+-+.+ ....+||.++|.|..
T Consensus 136 ~v~~~~~~~~~~~~~~~~~~GI~r~V~L~~ 165 (167)
T PF02837_consen 136 RVDNWPDGSTIPGFDYFNYAGIWRPVWLEA 165 (167)
T ss_dssp EEESSSGGGCGBSSSEEE--EEESEEEEEE
T ss_pred EEeecCCCceeecCcCCccCccccEEEEEE
Confidence 99976533331111 145789999999863
No 12
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.02 E-value=4.7e-09 Score=108.43 Aligned_cols=162 Identities=17% Similarity=0.193 Sum_probs=112.7
Q ss_pred ECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCCCC-CCCce-eeccccchHHHHHHHHHHcCcEEEE
Q 006249 36 IGGKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHE-PVRNQ-YNFEGRYDLVKFVKLVAEAGLYAHL 113 (654)
Q Consensus 36 idG~p~~~~sG~iHy~R~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hE-p~~G~-~dF~g~~dl~~fl~la~~~GL~Vil 113 (654)
.+|+++.+.+-+.|+.. +..-++.++.||++|+|+||+.|.|...+ |.|+. ++=+.-..|+++|+.|+++||+|||
T Consensus 3 ~~G~~v~~~G~n~~w~~--~~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vil 80 (281)
T PF00150_consen 3 QNGKPVNWRGFNTHWYN--PSITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVIL 80 (281)
T ss_dssp TTSEBEEEEEEEETTSG--GGSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEE
T ss_pred CCCCeEEeeeeecccCC--CCCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEE
Confidence 37999999999999422 22788999999999999999999995444 67764 7666677999999999999999999
Q ss_pred ecCcccccccCCCCCCcccccCCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccccccc--c
Q 006249 114 RIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSA--Y 191 (654)
Q Consensus 114 r~GPyi~aEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QIENEyg~~~~~--~ 191 (654)
.+= + .|.|...... -...+...+...++++.|++++++ ..+|++++|=||....... +
T Consensus 81 d~h----~------~~~w~~~~~~---~~~~~~~~~~~~~~~~~la~~y~~-------~~~v~~~el~NEP~~~~~~~~w 140 (281)
T PF00150_consen 81 DLH----N------APGWANGGDG---YGNNDTAQAWFKSFWRALAKRYKD-------NPPVVGWELWNEPNGGNDDANW 140 (281)
T ss_dssp EEE----E------STTCSSSTST---TTTHHHHHHHHHHHHHHHHHHHTT-------TTTTEEEESSSSGCSTTSTTTT
T ss_pred Eec----c------Cccccccccc---cccchhhHHHHHhhhhhhccccCC-------CCcEEEEEecCCccccCCcccc
Confidence 762 2 2666432111 112333445555666677777663 3479999999999764211 1
Q ss_pred C----cccHHHHHHHHHHHhhcCCCcceEEcc
Q 006249 192 G----AAGKSYIKWAAGMALSLDTGVPWVMCQ 219 (654)
Q Consensus 192 g----~~~~~y~~~l~~~~~~~g~~vP~~~~~ 219 (654)
. ..-..+.+.+.+..|+.+.+.+++...
T Consensus 141 ~~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~~ 172 (281)
T PF00150_consen 141 NAQNPADWQDWYQRAIDAIRAADPNHLIIVGG 172 (281)
T ss_dssp SHHHTHHHHHHHHHHHHHHHHTTSSSEEEEEE
T ss_pred ccccchhhhhHHHHHHHHHHhcCCcceeecCC
Confidence 0 112456677777888888887766543
No 13
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.78 E-value=3.9e-08 Score=89.62 Aligned_cols=82 Identities=22% Similarity=0.342 Sum_probs=60.0
Q ss_pred hhhcCCCCCcceEEEEEEeccCCCcccccCCCceE-EEEc-cccceEEEEECCEEEEEEE-cCcCCceEEEecccccCCC
Q 006249 467 EQINTTADQSDYLWYSLSTNIKADEPLLEDGSKTV-LHVQ-SLGHALHAFINGKLVGSGY-GSSSNAKVTVDFPIALAPG 543 (654)
Q Consensus 467 Eqlg~T~d~~GyvWYrT~i~~~~~~~~~~~g~~~~-L~l~-~~~d~~~VfVNG~~vGt~~-g~~~~~~~~~~~~v~Lk~G 543 (654)
+..+.++++.|++|||++|.....+ .... |.+. +..++++|||||+++|+.. .......|.+|..+ |+.+
T Consensus 25 l~~~~~g~~~g~~~Yrg~F~~~~~~------~~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~~g~q~tf~~p~~i-l~~~ 97 (111)
T PF13364_consen 25 LYASDYGFHAGYLWYRGTFTGTGQD------TSLTPLNIQGGNAFRASVWVNGWFLGSYWPGIGPQTTFSVPAGI-LKYG 97 (111)
T ss_dssp TCCGCGTSSSCEEEEEEEEETTTEE------EEEE-EEECSSTTEEEEEEETTEEEEEEETTTECCEEEEE-BTT-BTTC
T ss_pred eccCccccCCCCEEEEEEEeCCCcc------eeEEEEeccCCCceEEEEEECCEEeeeecCCCCccEEEEeCcee-ecCC
Confidence 3445556799999999999653322 2233 4443 5699999999999999988 44445678888866 7778
Q ss_pred ccEEEEEEeecC
Q 006249 544 KNTFDLLSLTVG 555 (654)
Q Consensus 544 ~N~L~ILv~n~G 555 (654)
.|+|++|+.+||
T Consensus 98 n~v~~vl~~~~g 109 (111)
T PF13364_consen 98 NNVLVVLWDNMG 109 (111)
T ss_dssp EEEEEEEEE-ST
T ss_pred CEEEEEEEeCCC
Confidence 889999999998
No 14
>PRK10150 beta-D-glucuronidase; Provisional
Probab=98.57 E-value=3.4e-07 Score=106.19 Aligned_cols=114 Identities=22% Similarity=0.256 Sum_probs=84.2
Q ss_pred CCCchhhhhc---CCCCCcceEEEEEEeccCCCcccccCCCceEEEEccccceEEEEECCEEEEEEEcCcCCceEEEecc
Q 006249 461 TKPGLLEQIN---TTADQSDYLWYSLSTNIKADEPLLEDGSKTVLHVQSLGHALHAFINGKLVGSGYGSSSNAKVTVDFP 537 (654)
Q Consensus 461 ~~p~~~Eqlg---~T~d~~GyvWYrT~i~~~~~~~~~~~g~~~~L~l~~~~d~~~VfVNG~~vGt~~g~~~~~~~~~~~~ 537 (654)
..|..|+..+ -.++..|..|||++|++++. +.++++.|+++.+...+.|||||++||.+.+.+.+ |+++..
T Consensus 46 ~vP~~~~~~~~~~~~~~~~G~~WYrr~f~lp~~----~~gk~v~L~Fegv~~~a~V~lNG~~vg~~~~~~~~--f~~DIT 119 (604)
T PRK10150 46 AVPGSFNDQFADADIRNYVGDVWYQREVFIPKG----WAGQRIVLRFGSVTHYAKVWVNGQEVMEHKGGYTP--FEADIT 119 (604)
T ss_pred cCCCchhhccccccccCCcccEEEEEEEECCcc----cCCCEEEEEECcccceEEEEECCEEeeeEcCCccc--eEEeCc
Confidence 3455555432 13567899999999999864 37889999999999999999999999999988864 666655
Q ss_pred cccCCCcc-EEEEEEeecCcc------c------------ccCCccccccceecceEEeccCC
Q 006249 538 IALAPGKN-TFDLLSLTVGLQ------N------------YGAFYEKTGAGITGPVQLKGSGN 581 (654)
Q Consensus 538 v~Lk~G~N-~L~ILv~n~Gr~------N------------yG~~~e~~~kGI~g~V~L~g~~~ 581 (654)
-.|+.|+| +|+|+|.|.-+. . +...+ ....||.++|.|...+.
T Consensus 120 ~~l~~G~~n~L~V~v~n~~~~~~~p~g~~~~~~~~~~k~~~~~d~-~~~~GI~r~V~L~~~~~ 181 (604)
T PRK10150 120 PYVYAGKSVRITVCVNNELNWQTLPPGNVIEDGNGKKKQKYNFDF-FNYAGIHRPVMLYTTPK 181 (604)
T ss_pred hhccCCCceEEEEEEecCCCcccCCCCccccCCcccccccccccc-ccccCCCceEEEEEcCC
Confidence 56888875 999999774210 0 11111 24679999999976644
No 15
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=98.39 E-value=1.7e-06 Score=105.66 Aligned_cols=101 Identities=22% Similarity=0.208 Sum_probs=76.1
Q ss_pred cceEEEEEEeccCCCcccccCCC-ceEEEEccccceEEEEECCEEEEEEEcCcCCceEEEecccccCCCccEEEEEEeec
Q 006249 476 SDYLWYSLSTNIKADEPLLEDGS-KTVLHVQSLGHALHAFINGKLVGSGYGSSSNAKVTVDFPIALAPGKNTFDLLSLTV 554 (654)
Q Consensus 476 ~GyvWYrT~i~~~~~~~~~~~g~-~~~L~l~~~~d~~~VfVNG~~vGt~~g~~~~~~~~~~~~v~Lk~G~N~L~ILv~n~ 554 (654)
.+..|||++|++|++. .++ +..|+++.+...+.|||||++||.+.+.+.+ |+++..-.|+.|+|+|+|+|..-
T Consensus 119 n~~gwYrr~F~vp~~w----~~~~rv~L~FeGV~~~a~VwvNG~~VG~~~g~~~p--fefDIT~~l~~G~N~L~V~V~~~ 192 (1027)
T PRK09525 119 NPTGCYSLTFTVDESW----LQSGQTRIIFDGVNSAFHLWCNGRWVGYSQDSRLP--AEFDLSPFLRAGENRLAVMVLRW 192 (1027)
T ss_pred CCeEEEEEEEEeChhh----cCCCeEEEEECeeccEEEEEECCEEEEeecCCCce--EEEEChhhhcCCccEEEEEEEec
Confidence 4678999999998653 454 7899999999999999999999999888764 56666566899999999999543
Q ss_pred CcccccCCcc-ccccceecceEEeccCCC
Q 006249 555 GLQNYGAFYE-KTGAGITGPVQLKGSGNG 582 (654)
Q Consensus 555 Gr~NyG~~~e-~~~kGI~g~V~L~g~~~g 582 (654)
....|-...+ .+..||.++|.|...+..
T Consensus 193 sdgs~~e~qd~w~~sGI~R~V~L~~~p~~ 221 (1027)
T PRK09525 193 SDGSYLEDQDMWRMSGIFRDVSLLHKPTT 221 (1027)
T ss_pred CCCCccccCCceeeccccceEEEEEcCCc
Confidence 2112211111 245799999999766543
No 16
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=98.38 E-value=1.7e-06 Score=105.77 Aligned_cols=101 Identities=19% Similarity=0.202 Sum_probs=77.2
Q ss_pred cceEEEEEEeccCCCcccccCCCceEEEEccccceEEEEECCEEEEEEEcCcCCceEEEecccccCCCccEEEEEEeecC
Q 006249 476 SDYLWYSLSTNIKADEPLLEDGSKTVLHVQSLGHALHAFINGKLVGSGYGSSSNAKVTVDFPIALAPGKNTFDLLSLTVG 555 (654)
Q Consensus 476 ~GyvWYrT~i~~~~~~~~~~~g~~~~L~l~~~~d~~~VfVNG~~vGt~~g~~~~~~~~~~~~v~Lk~G~N~L~ILv~n~G 555 (654)
.+..|||++|++|++ |.+++..|+++.+...+.|||||++||.+.+.+.+ |+++..-.|+.|+|+|+|+|.+..
T Consensus 108 n~~g~Yrr~F~lp~~----~~gkrv~L~FeGV~s~a~VwvNG~~VG~~~g~~~p--fefDIT~~l~~G~N~LaV~V~~~~ 181 (1021)
T PRK10340 108 NPTGAYQRTFTLSDG----WQGKQTIIKFDGVETYFEVYVNGQYVGFSKGSRLT--AEFDISAMVKTGDNLLCVRVMQWA 181 (1021)
T ss_pred CCeEEEEEEEEeCcc----cccCcEEEEECccceEEEEEECCEEeccccCCCcc--EEEEcchhhCCCccEEEEEEEecC
Confidence 467899999999875 37889999999999999999999999999988765 445544468899999999997543
Q ss_pred cccccCCcc-ccccceecceEEeccCCC
Q 006249 556 LQNYGAFYE-KTGAGITGPVQLKGSGNG 582 (654)
Q Consensus 556 r~NyG~~~e-~~~kGI~g~V~L~g~~~g 582 (654)
-..|-...+ ....||.++|.|...+..
T Consensus 182 d~s~le~qd~w~~sGI~R~V~L~~~p~~ 209 (1021)
T PRK10340 182 DSTYLEDQDMWWLAGIFRDVYLVGKPLT 209 (1021)
T ss_pred CCCccccCCccccccccceEEEEEeCCc
Confidence 222211111 135799999999876543
No 17
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=98.20 E-value=4.1e-06 Score=86.91 Aligned_cols=117 Identities=24% Similarity=0.381 Sum_probs=88.4
Q ss_pred CCCCCCCCceeeccccchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccccCCCeeeecCChhHHHHHHHHHHHH
Q 006249 79 WNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKI 158 (654)
Q Consensus 79 Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l 158 (654)
|...||+||+|||+ .++++++.|+++||.|. ..+-+ |-. ..|.|+...+ .+..++++++|++.+
T Consensus 3 W~~~ep~~G~~n~~---~~D~~~~~a~~~gi~v~--gH~l~---W~~-~~P~W~~~~~-------~~~~~~~~~~~i~~v 66 (254)
T smart00633 3 WDSTEPSRGQFNFS---GADAIVNFAKENGIKVR--GHTLV---WHS-QTPDWVFNLS-------KETLLARLENHIKTV 66 (254)
T ss_pred cccccCCCCccChH---HHHHHHHHHHHCCCEEE--EEEEe---ecc-cCCHhhhcCC-------HHHHHHHHHHHHHHH
Confidence 89999999999999 89999999999999983 32222 433 6899997433 345677888888888
Q ss_pred HHHHHhcccccccCCceEeeccccccccccc------cc-CcccHHHHHHHHHHHhhcCCCcceEEccC
Q 006249 159 VDMMKQEKLYASQGGPIILSQIENEYGNIDS------AY-GAAGKSYIKWAAGMALSLDTGVPWVMCQQ 220 (654)
Q Consensus 159 ~~~i~~~~l~~~~gGpII~~QIENEyg~~~~------~~-g~~~~~y~~~l~~~~~~~g~~vP~~~~~~ 220 (654)
+.+.+ |.|..|+|-||.-+... .| ...+.+|+...-+.+++.+.++.++.++.
T Consensus 67 ~~ry~---------g~i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Ndy 126 (254)
T smart00633 67 VGRYK---------GKIYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYNDY 126 (254)
T ss_pred HHHhC---------CcceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEecc
Confidence 77766 46899999999643210 11 12345899999999999999999988753
No 18
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=98.17 E-value=2.2e-05 Score=82.98 Aligned_cols=155 Identities=16% Similarity=0.164 Sum_probs=89.2
Q ss_pred CCeeEEEecCcEE--ECCEEeEEEEEEeeCCCC-----------CcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCcee
Q 006249 23 FGANVTYDHRAVV--IGGKRRVLISGSIHYPRS-----------TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQY 89 (654)
Q Consensus 23 ~~~~v~~d~~~~~--idG~p~~~~sG~iHy~R~-----------~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~ 89 (654)
.-..|++.++.|+ .+|++|+|.+-...+.-. .++.|++++..||++|+||||+|- ..|..
T Consensus 7 ~~~pI~ikG~kff~~~~g~~F~ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~----vdp~~--- 79 (314)
T PF03198_consen 7 AVPPIEIKGNKFFYSKNGTRFFIKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYS----VDPSK--- 79 (314)
T ss_dssp TS--EEEETTEEEETTT--B--EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES-------TTS---
T ss_pred cCCCEEEECCEeEECCCCCEEEEeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEE----eCCCC---
Confidence 3466888998898 789999998876665322 467899999999999999999972 33433
Q ss_pred eccccchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccccCCCeeeecCCh--hHHHHHHHHHHHHHHHHHhccc
Q 006249 90 NFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNE--PFKAEMQRFTAKIVDMMKQEKL 167 (654)
Q Consensus 90 dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~d~--~y~~~~~~~~~~l~~~i~~~~l 167 (654)
|-++++++.++.|||||+-.+. | ...+-..+| .|-...-.-+.++++.++.++
T Consensus 80 ------nHd~CM~~~~~aGIYvi~Dl~~-----------p-------~~sI~r~~P~~sw~~~l~~~~~~vid~fa~Y~- 134 (314)
T PF03198_consen 80 ------NHDECMSAFADAGIYVILDLNT-----------P-------NGSINRSDPAPSWNTDLLDRYFAVIDAFAKYD- 134 (314)
T ss_dssp --------HHHHHHHHHTT-EEEEES-B-----------T-------TBS--TTS------HHHHHHHHHHHHHHTT-T-
T ss_pred ------CHHHHHHHHHhCCCEEEEecCC-----------C-------CccccCCCCcCCCCHHHHHHHHHHHHHhccCC-
Confidence 8899999999999999998752 2 222334555 554444444455667777543
Q ss_pred ccccCCceEeecccccccccccc--cCcccHHHHHHHHHHHhhcCC-Ccce
Q 006249 168 YASQGGPIILSQIENEYGNIDSA--YGAAGKSYIKWAAGMALSLDT-GVPW 215 (654)
Q Consensus 168 ~~~~gGpII~~QIENEyg~~~~~--~g~~~~~y~~~l~~~~~~~g~-~vP~ 215 (654)
++++.=+.||.-.-... -.+.-++..+-+|+..++.+. .+|+
T Consensus 135 ------N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R~IPV 179 (314)
T PF03198_consen 135 ------NTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYRSIPV 179 (314)
T ss_dssp ------TEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS----E
T ss_pred ------ceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCce
Confidence 89999999998542110 012345556666777777776 4565
No 19
>TIGR03356 BGL beta-galactosidase.
Probab=98.06 E-value=1e-05 Score=90.20 Aligned_cols=109 Identities=17% Similarity=0.109 Sum_probs=88.4
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCCCCCC-CceeeccccchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCccccc
Q 006249 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPV-RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHF 134 (654)
Q Consensus 56 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~-~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~ 134 (654)
..|+++|+.||++|+|++|+-|.|+..+|. +|++|.+|-...+++|+.|.++||.+|+-.= .-.+|.||.+
T Consensus 54 ~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~--------Hfd~P~~l~~ 125 (427)
T TIGR03356 54 HRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLY--------HWDLPQALED 125 (427)
T ss_pred HhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeec--------cCCccHHHHh
Confidence 468899999999999999999999999999 7999999988999999999999999887652 2358999986
Q ss_pred CCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeeccccccc
Q 006249 135 IPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYG 185 (654)
Q Consensus 135 ~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QIENEyg 185 (654)
..+- .++...++..+|.+.+++++++ .|=.|-.=||..
T Consensus 126 ~gGw----~~~~~~~~f~~ya~~~~~~~~d---------~v~~w~t~NEp~ 163 (427)
T TIGR03356 126 RGGW----LNRDTAEWFAEYAAVVAERLGD---------RVKHWITLNEPW 163 (427)
T ss_pred cCCC----CChHHHHHHHHHHHHHHHHhCC---------cCCEEEEecCcc
Confidence 5543 4577778888888888877773 244455556654
No 20
>PLN02705 beta-amylase
Probab=98.03 E-value=3.3e-05 Score=86.93 Aligned_cols=145 Identities=20% Similarity=0.252 Sum_probs=96.3
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCCCCC-CCceeeccccchHHHHHHHHHHcCcEEEEecCcccccccCCC-----C
Q 006249 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEP-VRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFG-----G 127 (654)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp-~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~G-----G 127 (654)
.++.-+..|+++|++|++-|.+-|.|.+.|. .|++|||+| ..+++++|+++||++.+-..=--||- +-| -
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~L~~mvr~~GLKlqvVmSFHqCGG-NVGD~~~IP 341 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSG---YRELFNIIREFKLKLQVVMAFHEYGG-NASGNVMIS 341 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEeeccCC-CCCCccccc
Confidence 3456788999999999999999999999998 699999995 66789999999999754443344555 223 2
Q ss_pred CCccccc----CCCeeee------------------------cCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeec
Q 006249 128 FPLWLHF----IPGIQFR------------------------TDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQ 179 (654)
Q Consensus 128 ~P~WL~~----~p~~~~R------------------------~~d~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~Q 179 (654)
||.|+.+ +|++.+. |--+.|.+.|+.|=..+.+.|. +|-|.-+|
T Consensus 342 LP~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~--------~g~I~eI~ 413 (681)
T PLN02705 342 LPQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDLFV--------EGLITAVE 413 (681)
T ss_pred CCHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHhcc--------CCceeEEE
Confidence 8999975 5776431 1113455555555555444332 46888888
Q ss_pred ccc------cccccc----ccc---C--cc-cHHHHHHHHHHHhhcC
Q 006249 180 IEN------EYGNID----SAY---G--AA-GKSYIKWAAGMALSLD 210 (654)
Q Consensus 180 IEN------Eyg~~~----~~~---g--~~-~~~y~~~l~~~~~~~g 210 (654)
|.= =|-+|. +.| | .| |+--+..|++.|.+.|
T Consensus 414 VGLGP~GELRYPSYp~~~gW~fPGiGEFQCYDkymla~Lk~aA~a~G 460 (681)
T PLN02705 414 IGLGASGELKYPSFPERMGWIYPGIGEFQCYDKYSQQNLRKAAKSRG 460 (681)
T ss_pred eccCCCccccCCCCcccCCCCCCCcceeeeccHHHHHHHHHHHHHhC
Confidence 732 244432 111 1 12 4433456788887776
No 21
>PLN02801 beta-amylase
Probab=97.99 E-value=5e-05 Score=84.33 Aligned_cols=82 Identities=24% Similarity=0.442 Sum_probs=65.2
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCCCCC-CCceeeccccchHHHHHHHHHHcCcEEEEecCcccccccCCC-----C
Q 006249 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEP-VRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFG-----G 127 (654)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp-~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~G-----G 127 (654)
.++.-+..|+++|++|++.|.+.|.|.+.|. .|++|||+| ..+++++|+++||++.+-..=--||- +-| -
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NVGD~~~Ip 110 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSA---YRSLFELVQSFGLKIQAIMSFHQCGG-NVGDAVNIP 110 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccccc
Confidence 4566889999999999999999999999998 599999995 66789999999999754443344554 222 3
Q ss_pred CCccccc----CCCee
Q 006249 128 FPLWLHF----IPGIQ 139 (654)
Q Consensus 128 ~P~WL~~----~p~~~ 139 (654)
||.|+.+ +|++.
T Consensus 111 LP~WV~~~g~~~pDi~ 126 (517)
T PLN02801 111 IPQWVRDVGDSDPDIF 126 (517)
T ss_pred CCHHHHHhhccCCCce
Confidence 8999974 57764
No 22
>PLN02905 beta-amylase
Probab=97.97 E-value=5.4e-05 Score=85.51 Aligned_cols=145 Identities=21% Similarity=0.367 Sum_probs=97.4
Q ss_pred cccHHHHHHHHHHCCCCEEEEcccCCCCCC-CCceeeccccchHHHHHHHHHHcCcEEEEecCcccccccCCC-----CC
Q 006249 55 PEMWPDLIQKSKDGGLDVIETYVFWNLHEP-VRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFG-----GF 128 (654)
Q Consensus 55 ~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp-~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~G-----G~ 128 (654)
++.-+..|+++|++|++-|.+-|.|.+.|. .|++|||+| ..+++++|+++||++.+-..=--||- +-| -|
T Consensus 285 ~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsg---Y~~L~~mvr~~GLKlqvVMSFHqCGG-NVGD~~~IPL 360 (702)
T PLN02905 285 PDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNG---YKRLFQMVRELKLKLQVVMSFHECGG-NVGDDVCIPL 360 (702)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCcccccC
Confidence 445678999999999999999999999998 799999995 66889999999999754443344554 222 38
Q ss_pred Cccccc----CCCeeee------------------------cCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecc
Q 006249 129 PLWLHF----IPGIQFR------------------------TDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQI 180 (654)
Q Consensus 129 P~WL~~----~p~~~~R------------------------~~d~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QI 180 (654)
|.|+.+ +|++.+. |--+.|.+.|+.|=..+.+.|. +|-|.-+||
T Consensus 361 P~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~--------~g~I~eI~V 432 (702)
T PLN02905 361 PHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEFFE--------DGVISMVEV 432 (702)
T ss_pred CHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHHhc--------CCceEEEEe
Confidence 999975 5776432 1124466666666555544443 367888887
Q ss_pred cc------ccccccc----cc---C--cc-cHHHHHHHHHHHhhcCC
Q 006249 181 EN------EYGNIDS----AY---G--AA-GKSYIKWAAGMALSLDT 211 (654)
Q Consensus 181 EN------Eyg~~~~----~~---g--~~-~~~y~~~l~~~~~~~g~ 211 (654)
.= =|-+|.. .| | .| |+--+..|++.|.+.|-
T Consensus 433 GLGPaGELRYPSYp~s~GW~fPGiGEFQCYDKymla~Lk~aA~a~Gh 479 (702)
T PLN02905 433 GLGPCGELRYPSCPVKHGWRYPGIGEFQCYDQYLLKSLRKAAEARGH 479 (702)
T ss_pred ccCCCccccCCCCcCcCCCCCCCcceeeeccHHHHHHHHHHHHHhCc
Confidence 32 2444321 11 1 12 34334568888877764
No 23
>PLN00197 beta-amylase; Provisional
Probab=97.97 E-value=6e-05 Score=84.37 Aligned_cols=83 Identities=23% Similarity=0.446 Sum_probs=66.0
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCCCCC-CCceeeccccchHHHHHHHHHHcCcEEEEecCcccccccCCC-----C
Q 006249 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEP-VRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFG-----G 127 (654)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp-~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~G-----G 127 (654)
.++.-+..|+++|++|++-|.+-|.|.+.|. .|++|||+| ..+++++|+++||++.+-..=--||- +-| -
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsg---Y~~L~~mvr~~GLKlq~VmSFHqCGG-NVGD~~~Ip 200 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGG---YNELLEMAKRHGLKVQAVMSFHQCGG-NVGDSCTIP 200 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccccc
Confidence 4556889999999999999999999999998 799999995 66789999999999754443344554 222 3
Q ss_pred CCccccc----CCCeee
Q 006249 128 FPLWLHF----IPGIQF 140 (654)
Q Consensus 128 ~P~WL~~----~p~~~~ 140 (654)
||.|+.+ +|++.+
T Consensus 201 LP~WV~~~g~~dpDiff 217 (573)
T PLN00197 201 LPKWVVEEVDKDPDLAY 217 (573)
T ss_pred CCHHHHHhhccCCCcee
Confidence 8999975 577643
No 24
>PLN02803 beta-amylase
Probab=97.85 E-value=5.2e-05 Score=84.61 Aligned_cols=82 Identities=23% Similarity=0.501 Sum_probs=64.6
Q ss_pred cccHHHHHHHHHHCCCCEEEEcccCCCCCC-CCceeeccccchHHHHHHHHHHcCcEEEEecCcccccccCCC-----CC
Q 006249 55 PEMWPDLIQKSKDGGLDVIETYVFWNLHEP-VRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFG-----GF 128 (654)
Q Consensus 55 ~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp-~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~G-----G~ 128 (654)
++.-+..|+++|++|++-|.+-|.|.+.|. .|++|||+| ..+++++|+++||++..-..=--||- +-| -|
T Consensus 106 ~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NVGD~~~IpL 181 (548)
T PLN02803 106 PRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEG---YAELVQMVQKHGLKLQVVMSFHQCGG-NVGDSCSIPL 181 (548)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCcccccC
Confidence 455678999999999999999999999998 599999995 66789999999999754443344554 222 28
Q ss_pred Cccccc----CCCeee
Q 006249 129 PLWLHF----IPGIQF 140 (654)
Q Consensus 129 P~WL~~----~p~~~~ 140 (654)
|.|+.+ +|++.+
T Consensus 182 P~WV~e~~~~~pDi~f 197 (548)
T PLN02803 182 PPWVLEEMSKNPDLVY 197 (548)
T ss_pred CHHHHHhhhcCCCceE
Confidence 999975 577644
No 25
>PLN02161 beta-amylase
Probab=97.80 E-value=7.5e-05 Score=82.96 Aligned_cols=83 Identities=22% Similarity=0.382 Sum_probs=65.0
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCCCCC-CCceeeccccchHHHHHHHHHHcCcEEEEecCcccccccCCC-----C
Q 006249 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEP-VRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFG-----G 127 (654)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp-~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~G-----G 127 (654)
.++.-+..|+++|++|++-|.+-|.|.+.|. .|++|||+| ..+++++|++.||++.+-..=--|+- +-| -
T Consensus 115 ~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NvGd~~~Ip 190 (531)
T PLN02161 115 RLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSL---YEELFRLISEAGLKLHVALCFHSNMH-LFGGKGGIS 190 (531)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccCcc
Confidence 3445678999999999999999999999998 799999995 67889999999999755443344444 222 2
Q ss_pred CCccccc----CCCeee
Q 006249 128 FPLWLHF----IPGIQF 140 (654)
Q Consensus 128 ~P~WL~~----~p~~~~ 140 (654)
||.|+.+ +|++.+
T Consensus 191 LP~WV~~~g~~~pDi~f 207 (531)
T PLN02161 191 LPLWIREIGDVNKDIYY 207 (531)
T ss_pred CCHHHHhhhccCCCceE
Confidence 8999975 577644
No 26
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=97.64 E-value=0.00039 Score=73.74 Aligned_cols=224 Identities=21% Similarity=0.284 Sum_probs=110.9
Q ss_pred cCcEE-ECCEEeEEEEEEeeCC---CCCcccHHHHHHHHHHCCCCEEEEccc--CCCC-C-------C----CCceeecc
Q 006249 31 HRAVV-IGGKRRVLISGSIHYP---RSTPEMWPDLIQKSKDGGLDVIETYVF--WNLH-E-------P----VRNQYNFE 92 (654)
Q Consensus 31 ~~~~~-idG~p~~~~sG~iHy~---R~~~~~W~~~l~k~Ka~G~N~V~tyv~--Wn~h-E-------p----~~G~~dF~ 92 (654)
++.|. -||+||+.++ .-.+. |...++|+.-|+..|+-|+|+|++=++ |.-+ . | .++++||+
T Consensus 2 ~r~f~~~dG~Pff~lg-dT~W~~~~~~~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~ 80 (289)
T PF13204_consen 2 GRHFVYADGTPFFWLG-DTAWSLFHRLTREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFT 80 (289)
T ss_dssp SSSEEETTS-B--EEE-EE-TTHHHH--HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------T
T ss_pred CceEecCCCCEEeehh-HHHHHHhhCCCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCC
Confidence 35666 7999999998 55554 578899999999999999999999766 4422 1 1 12236776
Q ss_pred cc-----chHHHHHHHHHHcCcEEEEec---CcccccccCCCCCCcccccCCCeeeecCChhHHHHHHHHHHHHHHHHHh
Q 006249 93 GR-----YDLVKFVKLVAEAGLYAHLRI---GPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQ 164 (654)
Q Consensus 93 g~-----~dl~~fl~la~~~GL~Vilr~---GPyi~aEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~ 164 (654)
.- ..+++.|+.|.++||.+-|-| +||+-+-|-+| |..+ =.+.+++|.+.|+++++.
T Consensus 81 ~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~wg~~~~~~~Wg~~--~~~m--------------~~e~~~~Y~~yv~~Ry~~ 144 (289)
T PF13204_consen 81 RPNPAYFDHLDRRIEKANELGIEAALVPFWGCPYVPGTWGFG--PNIM--------------PPENAERYGRYVVARYGA 144 (289)
T ss_dssp T----HHHHHHHHHHHHHHTT-EEEEESS-HHHHH---------TTSS---------------HHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCeEEEEEEECCcccccccccc--ccCC--------------CHHHHHHHHHHHHHHHhc
Confidence 53 489999999999999986543 33443444433 1111 136688999999999996
Q ss_pred cccccccCCceEeecccccccccccccCcccHHHHHHHHHHHhhcCCCcceEEccC--C-CCC-----CccccC---CCC
Q 006249 165 EKLYASQGGPIILSQIENEYGNIDSAYGAAGKSYIKWAAGMALSLDTGVPWVMCQQ--S-DAP-----DPIINT---CNG 233 (654)
Q Consensus 165 ~~l~~~~gGpII~~QIENEyg~~~~~~g~~~~~y~~~l~~~~~~~g~~vP~~~~~~--~-~~~-----~~~~~~---~ng 233 (654)
.+ +|| |=|-||+ . .+....++.+.+.+..++..-.- +++.-. . ..+ .+-+.. ..|
T Consensus 145 ~~-------Nvi-W~l~gd~-~----~~~~~~~~w~~~~~~i~~~dp~~-L~T~H~~~~~~~~~~~~~~~Wldf~~~Qsg 210 (289)
T PF13204_consen 145 YP-------NVI-WILGGDY-F----DTEKTRADWDAMARGIKENDPYQ-LITIHPCGRTSSPDWFHDEPWLDFNMYQSG 210 (289)
T ss_dssp -S-------SEE-EEEESSS-------TTSSHHHHHHHHHHHHHH--SS--EEEEE-BTEBTHHHHTT-TT--SEEEB--
T ss_pred CC-------CCE-EEecCcc-C----CCCcCHHHHHHHHHHHHhhCCCC-cEEEeCCCCCCcchhhcCCCcceEEEeecC
Confidence 53 465 7799999 1 13356777778888888765433 333221 1 111 010111 112
Q ss_pred ccc---CC-------cC-CCCCCCCceeccc-ccccccccCCCCCCCCHHHHHHHHHHHHHcCC
Q 006249 234 FYC---DQ-------FT-PNSNNKPKMWTEN-WSGWFLSFGGAVPYRPVEDLAFAVARFFQRGG 285 (654)
Q Consensus 234 ~~~---~~-------~~-~~~~~~P~~~~E~-~~gwf~~wG~~~~~r~~~~~~~~~~~~l~~g~ 285 (654)
-.. +. .. ...|.+|++..|- |.|--..+.+.....+++++-...=+-+-+|+
T Consensus 211 h~~~~~~~~~~~~~~~~~~~~p~KPvin~Ep~YEg~~~~~~~~~~~~~~~dvrr~aw~svlaGa 274 (289)
T PF13204_consen 211 HNRYDQDNWYYLPEEFDYRRKPVKPVINGEPCYEGIPYSRWGYNGRFSAEDVRRRAWWSVLAGA 274 (289)
T ss_dssp S--TT--THHHH--HHHHTSSS---EEESS---BT-BTTSS-TS-B--HHHHHHHHHHHHHCT-
T ss_pred CCcccchHHHHHhhhhhhhhCCCCCEEcCcccccCCCCCcCcccCCCCHHHHHHHHHHHHhcCC
Confidence 111 11 11 4568899999985 44433222222334567776554434344565
No 27
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=97.50 E-value=0.00012 Score=79.92 Aligned_cols=115 Identities=18% Similarity=0.288 Sum_probs=72.8
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCCCCCC-CceeeccccchHHHHHHHHHHcCcEEEEecCcccccc----cCCCCCCcc
Q 006249 57 MWPDLIQKSKDGGLDVIETYVFWNLHEPV-RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAE----WNFGGFPLW 131 (654)
Q Consensus 57 ~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~-~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aE----w~~GG~P~W 131 (654)
.-+..|+++|++|++.|.+.|.|...|.. |++|||+| ..++.++|++.||++.+-..=--|+- .-+=-||.|
T Consensus 17 ~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs~---Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpLP~W 93 (402)
T PF01373_consen 17 ALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWSG---YRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPLPSW 93 (402)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---HH---HHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S-HH
T ss_pred HHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcCCHH
Confidence 45778999999999999999999999997 99999995 77889999999999765443334432 112248999
Q ss_pred ccc---CCCeeeecC--------------ChhHHHHHHHHHHHHHHHHHhcccccccCCceEeeccc
Q 006249 132 LHF---IPGIQFRTD--------------NEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIE 181 (654)
Q Consensus 132 L~~---~p~~~~R~~--------------d~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QIE 181 (654)
+.+ ..++.+... ... ++..+.|++.....++ ++. +.|..+||.
T Consensus 94 v~~~~~~~di~ytd~~G~rn~E~lSp~~~grt-~~~Y~dfm~sF~~~f~--~~~----~~I~~I~vg 153 (402)
T PF01373_consen 94 VWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRT-LQCYSDFMRSFRDNFS--DYL----STITEIQVG 153 (402)
T ss_dssp HHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBC-HHHHHHHHHHHHHHCH--HHH----TGEEEEEE-
T ss_pred HHhccccCCcEEECCCCCcCcceeecccCCch-HHHHHHHHHHHHHHHH--HHH----hhheEEEec
Confidence 974 225532110 112 4555556666666665 332 578888763
No 28
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=97.32 E-value=0.0002 Score=80.57 Aligned_cols=97 Identities=18% Similarity=0.228 Sum_probs=76.9
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCCCCCC--CceeeccccchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccc
Q 006249 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPV--RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLH 133 (654)
Q Consensus 56 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~--~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~ 133 (654)
..|+++|+.||++|+|+.++-|.|...+|. +|++|-+|-...+++|+.+.++||..|+-. -.-.+|.||.
T Consensus 58 ~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL--------~H~~~P~~l~ 129 (455)
T PF00232_consen 58 HRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTL--------YHFDLPLWLE 129 (455)
T ss_dssp HHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEE--------ESS--BHHHH
T ss_pred hhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeee--------eeccccccee
Confidence 458999999999999999999999999999 699999999999999999999999987765 3567999998
Q ss_pred cCCCeeeecCChhHHHHHHHHHHHHHHHHHh
Q 006249 134 FIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQ 164 (654)
Q Consensus 134 ~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~ 164 (654)
+.-+- .++...+...+|.+.+++.+.+
T Consensus 130 ~~ggw----~~~~~~~~F~~Ya~~~~~~~gd 156 (455)
T PF00232_consen 130 DYGGW----LNRETVDWFARYAEFVFERFGD 156 (455)
T ss_dssp HHTGG----GSTHHHHHHHHHHHHHHHHHTT
T ss_pred ecccc----cCHHHHHHHHHHHHHHHHHhCC
Confidence 75443 4577778888888888888873
No 29
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=97.24 E-value=0.0022 Score=69.28 Aligned_cols=137 Identities=20% Similarity=0.307 Sum_probs=79.9
Q ss_pred HHHHHHHHHCCCCEEEEcccCCCCCCCC-ceeeccccchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccccCCC
Q 006249 59 PDLIQKSKDGGLDVIETYVFWNLHEPVR-NQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPG 137 (654)
Q Consensus 59 ~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~-G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~ 137 (654)
+|.|+.||+.|+|.||.=| |+ .|.. |..|.+ +..++.+-|+++||.|+|-+- |- .-|..-|- ...|.
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-wv--~P~~~g~~~~~---~~~~~akrak~~Gm~vlldfH-YS-D~WaDPg~----Q~~P~ 94 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-WV--NPYDGGYNDLE---DVIALAKRAKAAGMKVLLDFH-YS-DFWADPGK----QNKPA 94 (332)
T ss_dssp --HHHHHHHTT--EEEEEE--S--S-TTTTTTSHH---HHHHHHHHHHHTT-EEEEEE--SS-SS--BTTB-----B--T
T ss_pred CCHHHHHHhcCCCeEEEEe-cc--CCcccccCCHH---HHHHHHHHHHHCCCeEEEeec-cc-CCCCCCCC----CCCCc
Confidence 5899999999999999987 54 4554 666666 666777777899999999863 21 11211110 00121
Q ss_pred eeeec-CChhHHHHHHHHHHHHHHHHHhcccccccCCceEeeccccccc--ccccccC--ccc---HHHHHHHHHHHhhc
Q 006249 138 IQFRT-DNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYG--NIDSAYG--AAG---KSYIKWAAGMALSL 209 (654)
Q Consensus 138 ~~~R~-~d~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QIENEyg--~~~~~~g--~~~---~~y~~~l~~~~~~~ 209 (654)
. -+. +-..-.++|..|.+.+++.|++ +|=.+=||||.||.. .+. ..| ..- ..+++.-.+.+|+.
T Consensus 95 a-W~~~~~~~l~~~v~~yT~~vl~~l~~------~G~~pd~VQVGNEin~Gmlw-p~g~~~~~~~~a~ll~ag~~AVr~~ 166 (332)
T PF07745_consen 95 A-WANLSFDQLAKAVYDYTKDVLQALKA------AGVTPDMVQVGNEINNGMLW-PDGKPSNWDNLAKLLNAGIKAVREV 166 (332)
T ss_dssp T-CTSSSHHHHHHHHHHHHHHHHHHHHH------TT--ESEEEESSSGGGESTB-TTTCTT-HHHHHHHHHHHHHHHHTH
T ss_pred c-CCCCCHHHHHHHHHHHHHHHHHHHHH------CCCCccEEEeCccccccccC-cCCCccCHHHHHHHHHHHHHHHHhc
Confidence 1 111 3456778999999999999994 455788999999984 331 112 112 23444455677776
Q ss_pred CCCcce
Q 006249 210 DTGVPW 215 (654)
Q Consensus 210 g~~vP~ 215 (654)
+.++.+
T Consensus 167 ~p~~kV 172 (332)
T PF07745_consen 167 DPNIKV 172 (332)
T ss_dssp SSTSEE
T ss_pred CCCCcE
Confidence 655544
No 30
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=97.17 E-value=0.00053 Score=73.76 Aligned_cols=158 Identities=18% Similarity=0.258 Sum_probs=109.7
Q ss_pred EEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEc--ccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEEecCcccc
Q 006249 43 LISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETY--VFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVC 120 (654)
Q Consensus 43 ~~sG~iHy~R~~~~~W~~~l~k~Ka~G~N~V~ty--v~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~ 120 (654)
.++.+++..++..+. ..+.+-..-||.|..- .-|...||++|+|||+ ..+++++.|+++||.|--.+ -
T Consensus 11 ~~G~av~~~~~~~~~---~~~~~~~~~Fn~~t~eN~~Kw~~~e~~~g~~~~~---~~D~~~~~a~~~g~~vrGH~--L-- 80 (320)
T PF00331_consen 11 PFGAAVNAQQLEDDP---RYRELFAKHFNSVTPENEMKWGSIEPEPGRFNFE---SADAILDWARENGIKVRGHT--L-- 80 (320)
T ss_dssp EEEEEEBGGGHTHHH---HHHHHHHHH-SEEEESSTTSHHHHESBTTBEE-H---HHHHHHHHHHHTT-EEEEEE--E--
T ss_pred CEEEEechhHcCCcH---HHHHHHHHhCCeeeeccccchhhhcCCCCccCcc---chhHHHHHHHhcCcceeeee--E--
Confidence 688899887765542 4444555678888874 5599999999999999 89999999999999985332 1
Q ss_pred cccCCCCCCcccccCCCeeeecC-ChhHHHHHHHHHHHHHHHHHhcccccccCCceEeeccccccccccc---------c
Q 006249 121 AEWNFGGFPLWLHFIPGIQFRTD-NEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDS---------A 190 (654)
Q Consensus 121 aEw~~GG~P~WL~~~p~~~~R~~-d~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QIENEyg~~~~---------~ 190 (654)
=|.. ..|.|+...+.. ... .+...+.++++++.++.+.++. |.|..|-|=||-=.-.. -
T Consensus 81 -vW~~-~~P~w~~~~~~~--~~~~~~~~~~~l~~~I~~v~~~y~~~-------g~i~~WDVvNE~i~~~~~~~~~r~~~~ 149 (320)
T PF00331_consen 81 -VWHS-QTPDWVFNLANG--SPDEKEELRARLENHIKTVVTRYKDK-------GRIYAWDVVNEAIDDDGNPGGLRDSPW 149 (320)
T ss_dssp -EESS-SS-HHHHTSTTS--SBHHHHHHHHHHHHHHHHHHHHTTTT-------TTESEEEEEES-B-TTSSSSSBCTSHH
T ss_pred -EEcc-cccceeeeccCC--CcccHHHHHHHHHHHHHHHHhHhccc-------cceEEEEEeeecccCCCccccccCChh
Confidence 1433 789999864110 000 1247888889999988887721 79999999999733111 0
Q ss_pred cCcccHHHHHHHHHHHhhcCCCcceEEccCC
Q 006249 191 YGAAGKSYIKWAAGMALSLDTGVPWVMCQQS 221 (654)
Q Consensus 191 ~g~~~~~y~~~l~~~~~~~g~~vP~~~~~~~ 221 (654)
+...|.+|+..+-++|++...++.|+.++..
T Consensus 150 ~~~lG~~yi~~aF~~A~~~~P~a~L~~NDy~ 180 (320)
T PF00331_consen 150 YDALGPDYIADAFRAAREADPNAKLFYNDYN 180 (320)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred hhcccHhHHHHHHHHHHHhCCCcEEEecccc
Confidence 1123567999999999999999999987754
No 31
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=97.00 E-value=0.0017 Score=73.42 Aligned_cols=96 Identities=14% Similarity=0.137 Sum_probs=77.3
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCCCCCC--CceeeccccchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccc
Q 006249 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPV--RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLH 133 (654)
Q Consensus 56 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~--~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~ 133 (654)
..|+++++.||++|+|+.|+-+.|...+|. ++++|=+|-...+++|+.|.++||..++-. ..=.+|.||.
T Consensus 71 hry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL--------~H~~~P~~l~ 142 (474)
T PRK09852 71 HRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTL--------CHFDVPMHLV 142 (474)
T ss_pred hhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHH
Confidence 447899999999999999999999999997 566788888899999999999999987765 2446899997
Q ss_pred cC-CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 006249 134 FI-PGIQFRTDNEPFKAEMQRFTAKIVDMMK 163 (654)
Q Consensus 134 ~~-p~~~~R~~d~~y~~~~~~~~~~l~~~i~ 163 (654)
.. -|- .++...++..+|.+.+++.+.
T Consensus 143 ~~~GGW----~~~~~~~~F~~ya~~~~~~fg 169 (474)
T PRK09852 143 TEYGSW----RNRKMVEFFSRYARTCFEAFD 169 (474)
T ss_pred HhcCCC----CCHHHHHHHHHHHHHHHHHhc
Confidence 53 442 456666666677666766666
No 32
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=97.00 E-value=0.0021 Score=72.88 Aligned_cols=96 Identities=17% Similarity=0.151 Sum_probs=79.7
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCCCCCC--CceeeccccchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccc
Q 006249 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPV--RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLH 133 (654)
Q Consensus 56 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~--~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~ 133 (654)
..|+++|+.||++|+|+.|+-|.|....|. +|++|-.|-...+++|+.|.++||..++-. -.=.+|.||.
T Consensus 69 hry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL--------~H~dlP~~L~ 140 (477)
T PRK15014 69 GHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITL--------SHFEMPLHLV 140 (477)
T ss_pred cccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHH
Confidence 458899999999999999999999999997 677898999999999999999999988765 2446899997
Q ss_pred cC-CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 006249 134 FI-PGIQFRTDNEPFKAEMQRFTAKIVDMMK 163 (654)
Q Consensus 134 ~~-p~~~~R~~d~~y~~~~~~~~~~l~~~i~ 163 (654)
.. -|- .++...++..+|.+.+++.++
T Consensus 141 ~~yGGW----~n~~~~~~F~~Ya~~~f~~fg 167 (477)
T PRK15014 141 QQYGSW----TNRKVVDFFVRFAEVVFERYK 167 (477)
T ss_pred HhcCCC----CChHHHHHHHHHHHHHHHHhc
Confidence 63 443 466777777777777777776
No 33
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=96.84 E-value=0.0031 Score=71.31 Aligned_cols=96 Identities=13% Similarity=0.115 Sum_probs=75.7
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCCCCCC-CceeeccccchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCccccc
Q 006249 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPV-RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHF 134 (654)
Q Consensus 56 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~-~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~ 134 (654)
..|+++++.||++|+|+-|+-|.|+-.+|. .|.+|-+|-..-+++|+.|.++||.-++-. -.=.+|.||.+
T Consensus 54 ~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL--------~H~dlP~~L~~ 125 (469)
T PRK13511 54 HRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTL--------HHFDTPEALHS 125 (469)
T ss_pred hhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEe--------cCCCCcHHHHH
Confidence 447899999999999999999999999996 578899999999999999999999877654 23358999986
Q ss_pred CCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 006249 135 IPGIQFRTDNEPFKAEMQRFTAKIVDMMK 163 (654)
Q Consensus 135 ~p~~~~R~~d~~y~~~~~~~~~~l~~~i~ 163 (654)
.-|- .++...++..+|.+.+++.+.
T Consensus 126 ~GGW----~n~~~v~~F~~YA~~~~~~fg 150 (469)
T PRK13511 126 NGDW----LNRENIDHFVRYAEFCFEEFP 150 (469)
T ss_pred cCCC----CCHHHHHHHHHHHHHHHHHhC
Confidence 5442 455555555555555555554
No 34
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=96.78 E-value=0.004 Score=70.43 Aligned_cols=96 Identities=14% Similarity=0.098 Sum_probs=77.5
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCCCCCC-CceeeccccchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCccccc
Q 006249 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPV-RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHF 134 (654)
Q Consensus 56 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~-~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~ 134 (654)
..|+++|+.||++|+|+-|+-|-|+-.+|. +|++|=+|-.--+++|+.|.++||..++-.= +=.+|.||.+
T Consensus 53 hry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~--------H~dlP~~L~~ 124 (467)
T TIGR01233 53 HKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLH--------HFDTPEALHS 124 (467)
T ss_pred hhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEecc--------CCCCcHHHHH
Confidence 458899999999999999999999999996 6788888999999999999999999877652 3358999986
Q ss_pred CCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 006249 135 IPGIQFRTDNEPFKAEMQRFTAKIVDMMK 163 (654)
Q Consensus 135 ~p~~~~R~~d~~y~~~~~~~~~~l~~~i~ 163 (654)
.-|- .++...++..+|.+.+++.+.
T Consensus 125 ~GGW----~n~~~v~~F~~YA~~~f~~fg 149 (467)
T TIGR01233 125 NGDF----LNRENIEHFIDYAAFCFEEFP 149 (467)
T ss_pred cCCC----CCHHHHHHHHHHHHHHHHHhC
Confidence 5443 456666666666666666655
No 35
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=96.78 E-value=0.018 Score=56.33 Aligned_cols=136 Identities=12% Similarity=0.135 Sum_probs=80.8
Q ss_pred CCCCcccHHHHHHHHHHCCCCEEEEcccCCCCC-----CC---CceeeccccchHHHHHHHHHHcCcEEEEecCcccccc
Q 006249 51 PRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHE-----PV---RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAE 122 (654)
Q Consensus 51 ~R~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hE-----p~---~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aE 122 (654)
-.++++.|+.+++.||++|+|+|=.= |...+ |. ++.|.-....-|+.+|++|++.||+|++-.+ -+
T Consensus 15 ~~~~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~--~~-- 88 (166)
T PF14488_consen 15 QNWTPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLY--FD-- 88 (166)
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCC--CC--
Confidence 47899999999999999999998421 22111 11 2223333455899999999999999998663 11
Q ss_pred cCCCCCCcccccCCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccccccccCcccHHHHHHH
Q 006249 123 WNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSAYGAAGKSYIKWA 202 (654)
Q Consensus 123 w~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QIENEyg~~~~~~g~~~~~y~~~l 202 (654)
|.|... .|+... ..+-+.|++.|. . .+.+....=+|=|-.|..... ....+..+.|
T Consensus 89 ------~~~w~~--------~~~~~~---~~~~~~v~~el~--~-~yg~h~sf~GWYip~E~~~~~----~~~~~~~~~l 144 (166)
T PF14488_consen 89 ------PDYWDQ--------GDLDWE---AERNKQVADELW--Q-RYGHHPSFYGWYIPYEIDDYN----WNAPERFALL 144 (166)
T ss_pred ------chhhhc--------cCHHHH---HHHHHHHHHHHH--H-HHcCCCCCceEEEecccCCcc----cchHHHHHHH
Confidence 223321 222221 111222444444 2 234455777888888886642 1345566666
Q ss_pred HHHHhhcCCCcceE
Q 006249 203 AGMALSLDTGVPWV 216 (654)
Q Consensus 203 ~~~~~~~g~~vP~~ 216 (654)
.+.+++.--+.|+.
T Consensus 145 ~~~lk~~s~~~Pv~ 158 (166)
T PF14488_consen 145 GKYLKQISPGKPVM 158 (166)
T ss_pred HHHHHHhCCCCCeE
Confidence 66666543355554
No 36
>PLN02998 beta-glucosidase
Probab=96.77 E-value=0.0014 Score=74.44 Aligned_cols=96 Identities=14% Similarity=0.200 Sum_probs=74.9
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCCCCCC-CceeeccccchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCccccc
Q 006249 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPV-RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHF 134 (654)
Q Consensus 56 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~-~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~ 134 (654)
..|+++|+.||++|+|+-|+-|-|+-.+|. .|.+|-+|-.--+++|+.+.++||..++-. -.=.+|.||..
T Consensus 82 hry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL--------~H~dlP~~L~~ 153 (497)
T PLN02998 82 HKYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTL--------HHFDLPQALED 153 (497)
T ss_pred HhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEe--------cCCCCCHHHHH
Confidence 458999999999999999999999999996 678899999999999999999999877654 13358999986
Q ss_pred C-CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 006249 135 I-PGIQFRTDNEPFKAEMQRFTAKIVDMMK 163 (654)
Q Consensus 135 ~-p~~~~R~~d~~y~~~~~~~~~~l~~~i~ 163 (654)
. -|- .++...++..+|.+.+++.+.
T Consensus 154 ~yGGW----~n~~~v~~F~~YA~~~~~~fg 179 (497)
T PLN02998 154 EYGGW----LSQEIVRDFTAYADTCFKEFG 179 (497)
T ss_pred hhCCc----CCchHHHHHHHHHHHHHHHhc
Confidence 3 553 344444555555555555555
No 37
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=96.76 E-value=0.0042 Score=70.47 Aligned_cols=96 Identities=16% Similarity=0.124 Sum_probs=74.3
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCCCCCC--CceeeccccchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccc
Q 006249 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPV--RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLH 133 (654)
Q Consensus 56 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~--~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~ 133 (654)
..|+++|+.||++|+|+.|+-|-|+-.+|. +|++|=.|-.--+++|+.|.++||..++-. -.=.+|.||.
T Consensus 73 hry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL--------~H~dlP~~L~ 144 (478)
T PRK09593 73 HHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTI--------THFDCPMHLI 144 (478)
T ss_pred HhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------cccCCCHHHH
Confidence 458899999999999999999999999997 677888899999999999999999877654 1335899998
Q ss_pred cC-CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 006249 134 FI-PGIQFRTDNEPFKAEMQRFTAKIVDMMK 163 (654)
Q Consensus 134 ~~-p~~~~R~~d~~y~~~~~~~~~~l~~~i~ 163 (654)
.. -|- .++...++..+|.+.+++.+.
T Consensus 145 ~~~GGW----~n~~~v~~F~~YA~~~~~~fg 171 (478)
T PRK09593 145 EEYGGW----RNRKMVGFYERLCRTLFTRYK 171 (478)
T ss_pred hhcCCC----CChHHHHHHHHHHHHHHHHhc
Confidence 53 443 344444555555555555554
No 38
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=96.73 E-value=0.011 Score=62.90 Aligned_cols=134 Identities=22% Similarity=0.311 Sum_probs=102.5
Q ss_pred HHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccccCCCeeeecCC
Q 006249 65 SKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDN 144 (654)
Q Consensus 65 ~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~d 144 (654)
.|+.+.=|-+.-.=|+..||++|.|+|+ --++..+.|+++||.+.-.+ .| |-+ -.|.|+..+. -+-
T Consensus 55 ~re~n~iTpenemKwe~i~p~~G~f~Fe---~AD~ia~FAr~h~m~lhGHt--Lv---W~~-q~P~W~~~~e-----~~~ 120 (345)
T COG3693 55 ARECNQITPENEMKWEAIEPERGRFNFE---AADAIANFARKHNMPLHGHT--LV---WHS-QVPDWLFGDE-----LSK 120 (345)
T ss_pred HhhhcccccccccccccccCCCCccCcc---chHHHHHHHHHcCCeeccce--ee---ecc-cCCchhhccc-----cCh
Confidence 5666665666666799999999999999 67899999999999764222 22 322 5899998633 255
Q ss_pred hhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccccc----c---ccCcccHHHHHHHHHHHhhcCCCcceEE
Q 006249 145 EPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNID----S---AYGAAGKSYIKWAAGMALSLDTGVPWVM 217 (654)
Q Consensus 145 ~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QIENEyg~~~----~---~~g~~~~~y~~~l~~~~~~~g~~vP~~~ 217 (654)
++.++.|++++..++.+.+ |-|+.|-|=||-=.-+ . ..+-.+.+|+++.=+.|++.+.+--++.
T Consensus 121 ~~~~~~~e~hI~tV~~rYk---------g~~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~ 191 (345)
T COG3693 121 EALAKMVEEHIKTVVGRYK---------GSVASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVI 191 (345)
T ss_pred HHHHHHHHHHHHHHHHhcc---------CceeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEe
Confidence 7889999999999999988 3599999999973311 1 1123578999999999999998888888
Q ss_pred ccCC
Q 006249 218 CQQS 221 (654)
Q Consensus 218 ~~~~ 221 (654)
++.+
T Consensus 192 NDY~ 195 (345)
T COG3693 192 NDYS 195 (345)
T ss_pred eccc
Confidence 7763
No 39
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=96.66 E-value=0.012 Score=61.67 Aligned_cols=124 Identities=23% Similarity=0.239 Sum_probs=81.0
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHH---HcCcEEEEecCcccccccCCCCCCcccc
Q 006249 57 MWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVA---EAGLYAHLRIGPYVCAEWNFGGFPLWLH 133 (654)
Q Consensus 57 ~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~---~~GL~Vilr~GPyi~aEw~~GG~P~WL~ 133 (654)
.=.|.|+-+|+.|+|-||.-| |+..--.-|+=-=.|+.|+.+.|++|+ ..||+|++..= |. .=|. =|+--
T Consensus 64 ~~qD~~~iLK~~GvNyvRlRv-wndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFH-YS-Dfwa---DPakQ- 136 (403)
T COG3867 64 VRQDALQILKNHGVNYVRLRV-WNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFH-YS-DFWA---DPAKQ- 136 (403)
T ss_pred hHHHHHHHHHHcCcCeEEEEE-ecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeecc-ch-hhcc---Chhhc-
Confidence 346899999999999999854 775544445444457889999998875 68999999862 10 0010 01100
Q ss_pred cCCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeeccccccc-ccccccCc
Q 006249 134 FIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYG-NIDSAYGA 193 (654)
Q Consensus 134 ~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QIENEyg-~~~~~~g~ 193 (654)
+.|....--+-+.-.+++-.|.+..+..++++ |=-+=||||.||-. ..-+..|+
T Consensus 137 ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~e------Gi~pdmVQVGNEtn~gflwp~Ge 191 (403)
T COG3867 137 KKPKAWENLNFEQLKKAVYSYTKYVLTTMKKE------GILPDMVQVGNETNGGFLWPDGE 191 (403)
T ss_pred CCcHHhhhcCHHHHHHHHHHHHHHHHHHHHHc------CCCccceEeccccCCceeccCCC
Confidence 01221112234556778888999999999955 44677999999984 34444563
No 40
>PLN02814 beta-glucosidase
Probab=96.59 E-value=0.0055 Score=69.92 Aligned_cols=96 Identities=16% Similarity=0.197 Sum_probs=76.2
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCCCCCC-CceeeccccchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCccccc
Q 006249 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPV-RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHF 134 (654)
Q Consensus 56 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~-~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~ 134 (654)
..|+++++.||++|+|+-|+-|-|+-.+|. +|.+|-+|-.--+++|+.|.++||..++-. -.=-+|.||.+
T Consensus 77 hry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL--------~H~dlP~~L~~ 148 (504)
T PLN02814 77 HKYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTL--------YHYDLPQSLED 148 (504)
T ss_pred HhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEe--------cCCCCCHHHHH
Confidence 458999999999999999999999999996 688999999999999999999999977654 12348999986
Q ss_pred C-CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 006249 135 I-PGIQFRTDNEPFKAEMQRFTAKIVDMMK 163 (654)
Q Consensus 135 ~-p~~~~R~~d~~y~~~~~~~~~~l~~~i~ 163 (654)
. -|- .++...++..+|.+.+++.+.
T Consensus 149 ~yGGW----~n~~~i~~F~~YA~~~f~~fg 174 (504)
T PLN02814 149 EYGGW----INRKIIEDFTAFADVCFREFG 174 (504)
T ss_pred hcCCc----CChhHHHHHHHHHHHHHHHhC
Confidence 3 443 455555555666666655555
No 41
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=96.57 E-value=0.0027 Score=71.98 Aligned_cols=96 Identities=17% Similarity=0.158 Sum_probs=74.4
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCCCCCC--CceeeccccchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccc
Q 006249 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPV--RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLH 133 (654)
Q Consensus 56 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~--~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~ 133 (654)
..|+++|+.||++|+|+-|+-|-|+-.+|. +|++|=+|-.--+++|+.|.++||.-++-. -.=-+|.||.
T Consensus 67 hry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL--------~H~dlP~~L~ 138 (476)
T PRK09589 67 HRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTL--------SHFEMPYHLV 138 (476)
T ss_pred HhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------cCCCCCHHHH
Confidence 458999999999999999999999999997 667888899999999999999999877654 2335899997
Q ss_pred cC-CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 006249 134 FI-PGIQFRTDNEPFKAEMQRFTAKIVDMMK 163 (654)
Q Consensus 134 ~~-p~~~~R~~d~~y~~~~~~~~~~l~~~i~ 163 (654)
.. -|- .++...++..+|.+.+++.+.
T Consensus 139 ~~yGGW----~n~~~i~~F~~YA~~~f~~fg 165 (476)
T PRK09589 139 TEYGGW----RNRKLIDFFVRFAEVVFTRYK 165 (476)
T ss_pred HhcCCc----CChHHHHHHHHHHHHHHHHhc
Confidence 53 453 344444555555555555555
No 42
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=96.49 E-value=0.0087 Score=66.54 Aligned_cols=115 Identities=11% Similarity=0.079 Sum_probs=73.0
Q ss_pred CcccH-----HHHHHHHHHCCCCEEEEcccCCCCCCC----CceeeccccchHHHHHHHHHHcCcEEEEec----Ccccc
Q 006249 54 TPEMW-----PDLIQKSKDGGLDVIETYVFWNLHEPV----RNQYNFEGRYDLVKFVKLVAEAGLYAHLRI----GPYVC 120 (654)
Q Consensus 54 ~~~~W-----~~~l~k~Ka~G~N~V~tyv~Wn~hEp~----~G~~dF~g~~dl~~fl~la~~~GL~Vilr~----GPyi~ 120 (654)
...-| ++.+..||.+|+|+||.++.|..+++. |...+=+--..|++.|+-|++.||+|+|-. |.-.|
T Consensus 66 ~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~ 145 (407)
T COG2730 66 LESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNG 145 (407)
T ss_pred chhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCC
Confidence 45568 899999999999999999994443554 322212222378999999999999999873 21111
Q ss_pred cccCCCCCCcccccCCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccc
Q 006249 121 AEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGN 186 (654)
Q Consensus 121 aEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QIENEyg~ 186 (654)
-| ..|.... . .......++...-++.|+.+.+ +.-.||++|+=||.-.
T Consensus 146 ~~------~s~~~~~--~---~~~~~~~~~~~~~w~~ia~~f~-------~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 146 HE------HSGYTSD--Y---KEENENVEATIDIWKFIANRFK-------NYDTVIGFELINEPNG 193 (407)
T ss_pred cC------ccccccc--c---cccchhHHHHHHHHHHHHHhcc-------CCCceeeeeeecCCcc
Confidence 11 1222210 0 0123334444555566666665 3458999999999863
No 43
>PLN02849 beta-glucosidase
Probab=96.48 E-value=0.0029 Score=72.07 Aligned_cols=96 Identities=16% Similarity=0.227 Sum_probs=74.8
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCCCCCC-CceeeccccchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCccccc
Q 006249 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPV-RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHF 134 (654)
Q Consensus 56 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~-~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~ 134 (654)
..|+++|+.||++|+|+-|+-|-|.-.+|. .|.+|=+|-.--+++|+.|.++||.-++-. -.=-+|.||.+
T Consensus 79 hrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL--------~H~dlP~~L~~ 150 (503)
T PLN02849 79 HKYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTL--------FHYDHPQYLED 150 (503)
T ss_pred HhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEee--------cCCCCcHHHHH
Confidence 458999999999999999999999999996 478898999999999999999999977654 23358999986
Q ss_pred C-CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 006249 135 I-PGIQFRTDNEPFKAEMQRFTAKIVDMMK 163 (654)
Q Consensus 135 ~-p~~~~R~~d~~y~~~~~~~~~~l~~~i~ 163 (654)
. -|- .++...++..+|.+.+++.+.
T Consensus 151 ~yGGW----~nr~~v~~F~~YA~~~f~~fg 176 (503)
T PLN02849 151 DYGGW----INRRIIKDFTAYADVCFREFG 176 (503)
T ss_pred hcCCc----CCchHHHHHHHHHHHHHHHhc
Confidence 3 443 344445555555555555555
No 44
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=96.28 E-value=0.027 Score=64.14 Aligned_cols=335 Identities=18% Similarity=0.276 Sum_probs=160.6
Q ss_pred EEeEEEEEEeeCC------CCCcccHHHHHHHH---HHCCCCEEEEcccC---CCCC----CCCceee---ccc-c---c
Q 006249 39 KRRVLISGSIHYP------RSTPEMWPDLIQKS---KDGGLDVIETYVFW---NLHE----PVRNQYN---FEG-R---Y 95 (654)
Q Consensus 39 ~p~~~~sG~iHy~------R~~~~~W~~~l~k~---Ka~G~N~V~tyv~W---n~hE----p~~G~~d---F~g-~---~ 95 (654)
|++.=++|++=-. +.+++.=++.|+.+ +-+|++.+|+.|-= +.++ ..|+-|+ |+= . .
T Consensus 74 Q~i~GFGga~Tdasa~~l~~l~~~~r~~ll~~~F~~~G~g~s~~R~pIgssDfs~~~Yty~d~~~D~~l~~Fs~~~~d~~ 153 (496)
T PF02055_consen 74 QTIDGFGGAFTDASAYNLQKLSEEQRDELLRSLFSEDGIGYSLLRVPIGSSDFSTRPYTYDDVPGDFNLSNFSIAREDKK 153 (496)
T ss_dssp EE--EEEEE--HHHHHHHHTS-HHHHHHHHHHHHSTTTT---EEEEEES--SSSSS---ST-STTHTTTTT---HHHHHT
T ss_pred eEEEEEeeeHHHHHHHHHHhCCHHHHHHHHHHHhhcCCceEEEEEeeccCcCCcCCcccccCCCCCCccccCCccccchh
Confidence 4445577777422 33443333333332 45899999987742 2221 1233222 221 1 1
Q ss_pred hHHHHHHHHHHc--CcEEEEecCcccccccCCCCCCcccccCCCe----eeec-CChhHHHHHHHHHHHHHHHHHhcccc
Q 006249 96 DLVKFVKLVAEA--GLYAHLRIGPYVCAEWNFGGFPLWLHFIPGI----QFRT-DNEPFKAEMQRFTAKIVDMMKQEKLY 168 (654)
Q Consensus 96 dl~~fl~la~~~--GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~----~~R~-~d~~y~~~~~~~~~~l~~~i~~~~l~ 168 (654)
.+..+|+.|++. +|+++.-| |. .|.|++....+ .++. .++.|.++...|+.+-++..++
T Consensus 154 ~~ip~ik~a~~~~~~lki~aSp-------WS---pP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~---- 219 (496)
T PF02055_consen 154 YKIPLIKEALAINPNLKIFASP-------WS---PPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKK---- 219 (496)
T ss_dssp THHHHHHHHHHHHTT-EEEEEE-------S------GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHC----
T ss_pred hHHHHHHHHHHhCCCcEEEEec-------CC---CCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHH----
Confidence 234678877654 46766665 43 89999863322 2442 3457888888888887777774
Q ss_pred cccCCceEeeccccccccc-------c-cccC-cccHHHHH-HHHHHHhhcCC--CcceEEccCC--CCCC---ccccC-
Q 006249 169 ASQGGPIILSQIENEYGNI-------D-SAYG-AAGKSYIK-WAAGMALSLDT--GVPWVMCQQS--DAPD---PIINT- 230 (654)
Q Consensus 169 ~~~gGpII~~QIENEyg~~-------~-~~~g-~~~~~y~~-~l~~~~~~~g~--~vP~~~~~~~--~~~~---~~~~~- 230 (654)
+|=+|=++-+.||.... . +.+. +..+.+++ .|...+++.|+ ++-+++++.. ..|+ .++.-
T Consensus 220 --~GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~~~~~~~~~~il~d~ 297 (496)
T PF02055_consen 220 --EGIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHNRDNLPDYADTILNDP 297 (496)
T ss_dssp --TT--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEEGGGTTHHHHHHHTSH
T ss_pred --CCCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCcccchhhhhhhcCh
Confidence 45599999999998641 1 1122 23456775 48889998877 7777666531 2231 12210
Q ss_pred -----CC--Cccc---CC-------cCCCCCCCCceecccccccccccCCCCC---CCCHHHHHHHHHHHHHcCCeeeee
Q 006249 231 -----CN--GFYC---DQ-------FTPNSNNKPKMWTENWSGWFLSFGGAVP---YRPVEDLAFAVARFFQRGGTFQNY 290 (654)
Q Consensus 231 -----~n--g~~~---~~-------~~~~~~~~P~~~~E~~~gwf~~wG~~~~---~r~~~~~~~~~~~~l~~g~s~~n~ 290 (654)
.. +++| +. .....|++.++.||-..|.. .|+.... ...++..+..+..-+..+++ ++
T Consensus 298 ~A~~yv~GiA~HwY~g~~~~~~l~~~h~~~P~k~l~~TE~~~g~~-~~~~~~~~g~w~~~~~y~~~ii~~lnn~~~--gw 374 (496)
T PF02055_consen 298 EAAKYVDGIAFHWYGGDPSPQALDQVHNKFPDKFLLFTEACCGSW-NWDTSVDLGSWDRAERYAHDIIGDLNNWVS--GW 374 (496)
T ss_dssp HHHTTEEEEEEEETTCS-HCHHHHHHHHHSTTSEEEEEEEESS-S-TTS-SS-TTHHHHHHHHHHHHHHHHHTTEE--EE
T ss_pred hhHhheeEEEEECCCCCchhhHHHHHHHHCCCcEEEeeccccCCC-CcccccccccHHHHHHHHHHHHHHHHhhce--ee
Confidence 01 3333 11 11346889999999876531 1221111 11234444444444566644 32
Q ss_pred eee------ecCCCCCCC-CCCCCccccccCCCCCCCCCCCCChhhHHHHHHHHHHHhhhhcccCCCCCCCCCCCCceeE
Q 006249 291 YMY------HGGTNFDRT-SGGPFISTSYDYDAPLDEYGLIRQPKWGHLKDLHKAIKLCEAALVATDPTYPSLGPNLEAT 363 (654)
Q Consensus 291 YM~------hGGTNfG~~-~G~~~~~tSYDy~Apl~E~G~~~~pky~~lr~l~~~i~~~~~~l~~~~p~~~~~g~~~~~~ 363 (654)
-++ .||-|++.- ..++.++.. +. +| -.++|.|+.|..+.+||+--...+-.... ..+.+.+.-
T Consensus 375 ~~WNl~LD~~GGP~~~~n~~d~~iivd~-~~----~~--~~~~p~yY~~gHfSKFV~PGa~RI~st~~---~~~~~l~~v 444 (496)
T PF02055_consen 375 IDWNLALDENGGPNWVGNFCDAPIIVDS-DT----GE--FYKQPEYYAMGHFSKFVRPGAVRIGSTSS---SSDSGLEAV 444 (496)
T ss_dssp EEEESEBETTS---TT---B--SEEEEG-GG----TE--EEE-HHHHHHHHHHTTS-TT-EEEEEEES---SSTTTEEEE
T ss_pred eeeeeecCCCCCCcccCCCCCceeEEEc-CC----Ce--EEEcHHHHHHHHHhcccCCCCEEEEeecc---CCCCceeEE
Confidence 222 488887532 112222111 11 12 13478999999998887543322211100 001134555
Q ss_pred EEecCCCceeEEEeecCCcce-eEEEECC-------eEEeecCceEE
Q 006249 364 VYKTGSGLCSAFLANIGTNSD-VTVKFNG-------NSYLLPAWSVS 402 (654)
Q Consensus 364 ~y~~~~~~~~~Fl~N~~~~~~-~~v~~~~-------~~~~~p~~sv~ 402 (654)
.|...++.-++.|.|..+... .+|++++ ..++||+.|+.
T Consensus 445 AF~nPDGs~vvVv~N~~~~~~~~~v~v~~~~~~~~~~~~~lp~~s~~ 491 (496)
T PF02055_consen 445 AFLNPDGSIVVVVLNRGDSDQNFSVTVKDGSKGNNHFNVTLPPRSIV 491 (496)
T ss_dssp EEEETTSEEEEEEEE-SSS-EEEEEEEECTTTEE--EEEEEE-TTEE
T ss_pred EEECCCCCEEEEEEcCCCCccceEEEEecCCcceeEEEEEeCCCceE
Confidence 577666777777888665433 3566653 35788887763
No 45
>KOG2024 consensus Beta-Glucuronidase GUSB (glycosylhydrolase superfamily 2) [Carbohydrate transport and metabolism]
Probab=96.06 E-value=0.013 Score=60.63 Aligned_cols=103 Identities=18% Similarity=0.180 Sum_probs=67.3
Q ss_pred CCCcceEEEEEEeccCCCcccccCCCceEEEEccccceEEEEECCEEEEEEEcCcCCceEEEecccccCCCc-cEEEE-E
Q 006249 473 ADQSDYLWYSLSTNIKADEPLLEDGSKTVLHVQSLGHALHAFINGKLVGSGYGSSSNAKVTVDFPIALAPGK-NTFDL-L 550 (654)
Q Consensus 473 ~d~~GyvWYrT~i~~~~~~~~~~~g~~~~L~l~~~~d~~~VfVNG~~vGt~~g~~~~~~~~~~~~v~Lk~G~-N~L~I-L 550 (654)
+|+.|.+||.+++.+++.+. ...+++..||+++++..+.|||||.-+=++.+.+. +|+.++...+.-|- |.++- |
T Consensus 84 rdfv~~~wyer~v~vpe~w~-~~~~~r~vlr~~s~H~~Aivwvng~~~~~h~gg~l--P~~~~is~~~~~g~~~~~dn~L 160 (297)
T KOG2024|consen 84 RDFVGLVWYERTVTVPESWT-QDLGKRVVLRIGSAHSYAIVWVNGVDALEHEGGHL--PLEPDISALVFFGPLPAIDNNL 160 (297)
T ss_pred ccceeeeEEEEEEEcchhhh-hhcCCeEEEEeecccceeEEEEcceeecccccCcc--ccchhhhhhhhccccccccCcc
Confidence 89999999999999997653 33567899999999999999999999888888765 34433222122221 21111 1
Q ss_pred EeecCcccccCCccccccceecceEEecc
Q 006249 551 SLTVGLQNYGAFYEKTGAGITGPVQLKGS 579 (654)
Q Consensus 551 v~n~Gr~NyG~~~e~~~kGI~g~V~L~g~ 579 (654)
.-..+-+++--.| .+++|+...|.+.-.
T Consensus 161 ~~~t~~~~~~~df-fnYag~~~sv~l~t~ 188 (297)
T KOG2024|consen 161 LSWTGPNSFCFDF-FNYAGEQRSVCLYTT 188 (297)
T ss_pred cccccCCcccccC-CCchhhheeeeeccC
Confidence 1222323332222 478898888777543
No 46
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=96.02 E-value=0.084 Score=60.90 Aligned_cols=71 Identities=21% Similarity=0.374 Sum_probs=52.6
Q ss_pred cceEEEEEEeccCCCcccccCCCceEEEEccccceEEEEECCEEEEEEEcC-cCCceEEEecccccCCCccEEEEEEeec
Q 006249 476 SDYLWYSLSTNIKADEPLLEDGSKTVLHVQSLGHALHAFINGKLVGSGYGS-SSNAKVTVDFPIALAPGKNTFDLLSLTV 554 (654)
Q Consensus 476 ~GyvWYrT~i~~~~~~~~~~~g~~~~L~l~~~~d~~~VfVNG~~vGt~~g~-~~~~~~~~~~~v~Lk~G~N~L~ILv~n~ 554 (654)
--.+||. .+++++.. .++.|.+.+.+- -+|||||+-+|.-.-. ..++.|-+|... ||++.|.|.|.=+-.
T Consensus 556 ~P~~w~k-~f~~p~g~------~~t~Ldm~g~GK-G~vwVNG~niGRYW~~~G~Q~~yhvPr~~-Lk~~~N~lvvfEee~ 626 (649)
T KOG0496|consen 556 QPLTWYK-TFDIPSGS------EPTALDMNGWGK-GQVWVNGQNIGRYWPSFGPQRTYHVPRSW-LKPSGNLLVVFEEEG 626 (649)
T ss_pred CCeEEEE-EecCCCCC------CCeEEecCCCcc-eEEEECCcccccccCCCCCceEEECcHHH-hCcCCceEEEEEecc
Confidence 4679999 88887543 357888888754 5699999999976533 225677788766 899999998776655
Q ss_pred C
Q 006249 555 G 555 (654)
Q Consensus 555 G 555 (654)
|
T Consensus 627 ~ 627 (649)
T KOG0496|consen 627 G 627 (649)
T ss_pred C
Confidence 5
No 47
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=95.63 E-value=0.065 Score=50.51 Aligned_cols=98 Identities=14% Similarity=0.117 Sum_probs=65.3
Q ss_pred HHHHHHHHCCCCEEEEccc----CC-----CCCCCCceeeccccchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCc
Q 006249 60 DLIQKSKDGGLDVIETYVF----WN-----LHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPL 130 (654)
Q Consensus 60 ~~l~k~Ka~G~N~V~tyv~----Wn-----~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~ 130 (654)
+-++.+|++|+|+|.++.= |. .|.+.|+- ++.-|..+++.|++.||.|++|...- -.|+-.---|.
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L----~~Dllge~v~a~h~~Girv~ay~~~~-~d~~~~~~HPe 78 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL----KRDLLGEQVEACHERGIRVPAYFDFS-WDEDAAERHPE 78 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC----CcCHHHHHHHHHHHCCCEEEEEEeee-cChHHHHhCCc
Confidence 4567899999999998432 33 34444433 12356899999999999999998655 44444556799
Q ss_pred ccccCCCee-------------eecCChhHHHHHHHHHHHHHHHH
Q 006249 131 WLHFIPGIQ-------------FRTDNEPFKAEMQRFTAKIVDMM 162 (654)
Q Consensus 131 WL~~~p~~~-------------~R~~d~~y~~~~~~~~~~l~~~i 162 (654)
|+..+++-+ .-+.|.+|++.+.+-+++|+...
T Consensus 79 W~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y 123 (132)
T PF14871_consen 79 WFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRY 123 (132)
T ss_pred eeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcC
Confidence 997544311 12345678877766666665544
No 48
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=95.41 E-value=0.11 Score=58.71 Aligned_cols=149 Identities=16% Similarity=0.263 Sum_probs=100.5
Q ss_pred CcEEECCEEeEEEEEEeeCC-----CCCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHH
Q 006249 32 RAVVIGGKRRVLISGSIHYP-----RSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAE 106 (654)
Q Consensus 32 ~~~~idG~p~~~~sG~iHy~-----R~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~ 106 (654)
..|.|||.|.++.++.--+. |.+-+.-+-.|+-++++|+|++++ |. -|.| .-+.|-++|.+
T Consensus 328 fyfkin~~pvflkg~nwip~s~f~dr~t~~~~~~LL~Sv~e~~MN~lRV---WG-----GGvY------Esd~FY~lad~ 393 (867)
T KOG2230|consen 328 FYFKINDEPVFLKGTNWIPVSMFRDRENIAKTEFLLDSVAEVGMNMLRV---WG-----GGVY------ESDYFYQLADS 393 (867)
T ss_pred eEEEEcCcEEEeecCCccChHHHHhhHHHHHHHHHHHHHHHhCcceEEE---ec-----Cccc------cchhHHHHhhh
Confidence 46899999999888765543 445555667899999999999999 44 2444 34599999999
Q ss_pred cCcEEEEecCcccccccCCCCCCcccccCCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeeccccc--c
Q 006249 107 AGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENE--Y 184 (654)
Q Consensus 107 ~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QIENE--y 184 (654)
.||.|--.. =|.||-. | .|+.|+.-++.=++.=+.+|+.| ..||.+-=.|| -
T Consensus 394 lGilVWQD~-MFACAlY------------P------t~~eFl~sv~eEV~yn~~Rls~H-------pSviIfsgNNENEa 447 (867)
T KOG2230|consen 394 LGILVWQDM-MFACALY------------P------TNDEFLSSVREEVRYNAMRLSHH-------PSVIIFSGNNENEA 447 (867)
T ss_pred ccceehhhh-HHHhhcc------------c------CcHHHHHHHHHHHHHHHHhhccC-------CeEEEEeCCCccHH
Confidence 999885433 2445542 2 67889988888777766677644 47888775554 2
Q ss_pred cccccccCc-------ccH----HHHHHHHHHHhhcCCCcceEEccC
Q 006249 185 GNIDSAYGA-------AGK----SYIKWAAGMALSLDTGVPWVMCQQ 220 (654)
Q Consensus 185 g~~~~~~g~-------~~~----~y~~~l~~~~~~~g~~vP~~~~~~ 220 (654)
.-.+.-|+. .-+ -|.+-+++++..-.-..|.+|...
T Consensus 448 Al~~nWy~~sf~~~~~~~kdyvlly~~~i~el~l~~~~srPfi~SSP 494 (867)
T KOG2230|consen 448 ALVQNWYGTSFERDRFESKDYVLLYANVIHELKLVSHSSRPFIVSSP 494 (867)
T ss_pred HHHhhhhcccccccchhhhhhhHHHHHHHHHHHhhcCCCCCceecCC
Confidence 111111221 112 355667777777777899888654
No 49
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=95.32 E-value=2.7 Score=46.59 Aligned_cols=248 Identities=16% Similarity=0.174 Sum_probs=131.4
Q ss_pred eCCCCCcccHHHHHHHHHHCCCCEEEE-------cccCCCCCCCCceeecc-ccchHHHHHHHHHHcCcEEEEecCcccc
Q 006249 49 HYPRSTPEMWPDLIQKSKDGGLDVIET-------YVFWNLHEPVRNQYNFE-GRYDLVKFVKLVAEAGLYAHLRIGPYVC 120 (654)
Q Consensus 49 Hy~R~~~~~W~~~l~k~Ka~G~N~V~t-------yv~Wn~hEp~~G~~dF~-g~~dl~~fl~la~~~GL~Vilr~GPyi~ 120 (654)
.+.+..++.|. +.+|++|+.-|=. +-.|.-....-..-+-. ++.-|..|.+.|+++||++-+=-.+
T Consensus 77 ~p~~fD~~~Wa---~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y~S~--- 150 (384)
T smart00812 77 TAEKFDPEEWA---DLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGLYHSL--- 150 (384)
T ss_pred CchhCCHHHHH---HHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEEEcCH---
Confidence 33445666665 5678888876532 22344332211111111 2334567889999999987664332
Q ss_pred cccCCCCCCcccccCCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccccccccCcccHH-HH
Q 006249 121 AEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSAYGAAGKS-YI 199 (654)
Q Consensus 121 aEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QIENEyg~~~~~~g~~~~~-y~ 199 (654)
-+|.+ |.|....+.-..+.+.+.|.++++.|+.+|.+.|.++ ||-++|- +-..+. .... -.
T Consensus 151 ~DW~~---p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Y-------gpd~lWf-D~~~~~-------~~~~~~~ 212 (384)
T smart00812 151 FDWFN---PLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTRY-------KPDLLWF-DGGWEA-------PDDYWRS 212 (384)
T ss_pred HHhCC---CccccccccccccccchhHHHHHHHHHHHHHHHHhcC-------CCceEEE-eCCCCC-------ccchhcH
Confidence 36754 4443211111123456789999988888888888743 3444442 111111 1111 14
Q ss_pred HHHHHHHhhcCCCc--ceEEccCCCCCCccccCCCCcc--c-CCcCCC-CCCCCc-eecccccccccccCC-CCCCCCHH
Q 006249 200 KWAAGMALSLDTGV--PWVMCQQSDAPDPIINTCNGFY--C-DQFTPN-SNNKPK-MWTENWSGWFLSFGG-AVPYRPVE 271 (654)
Q Consensus 200 ~~l~~~~~~~g~~v--P~~~~~~~~~~~~~~~~~ng~~--~-~~~~~~-~~~~P~-~~~E~~~gwf~~wG~-~~~~r~~~ 271 (654)
+.|.++++++..+. .++ ++... ...+. .|.+ | +...+. ....|- .|+=.-.+|+-+-+. ....++++
T Consensus 213 ~~l~~~~~~~qP~~~~vvv-n~R~~---~~~~~-~g~~~~~~e~~~p~~~~~~pwE~~~ti~~sWgy~~~~~~~~~ks~~ 287 (384)
T smart00812 213 KEFLAWLYNLSPVKDTVVV-NDRWG---GTGCK-HGGFYTDEERGAPGKLLPHPWETCTTIGKSWGYRRNESDSDYKSPK 287 (384)
T ss_pred HHHHHHHHHhCCCCceEEE-Ecccc---ccCCC-CCCcccCcccCCCCCCCCCCcccccccCCCCCcCCCCCcccCCCHH
Confidence 45666676655443 222 22211 00000 0111 1 111111 011121 111111355544443 23467999
Q ss_pred HHHHHHHHHHHcCCee-eeeeeeecCCCCCCCCCCCCccccccCCCCCCCCCCCCChhhHHHHHHHHHHHhhhhcccCCC
Q 006249 272 DLAFAVARFFQRGGTF-QNYYMYHGGTNFDRTSGGPFISTSYDYDAPLDEYGLIRQPKWGHLKDLHKAIKLCEAALVATD 350 (654)
Q Consensus 272 ~~~~~~~~~l~~g~s~-~n~YM~hGGTNfG~~~G~~~~~tSYDy~Apl~E~G~~~~pky~~lr~l~~~i~~~~~~l~~~~ 350 (654)
++...+.+..++|+++ +|. +-+.+|.+.+..-..|+++...++...+++-.+.
T Consensus 288 ~li~~l~~~Vsk~GnlLLNV--------------------------gP~~dG~ip~~~~~~L~~iG~Wl~~ngeaIy~tr 341 (384)
T smart00812 288 ELIRDLVDIVSKGGNLLLNV--------------------------GPKADGTIPEEEEERLLEIGKWLKVNGEAIYGTR 341 (384)
T ss_pred HHHHHHhhhcCCCceEEEcc--------------------------CCCCCCCCCHHHHHHHHHHHHHHHhCCceeecCC
Confidence 9999999999999883 343 3456788877778899999999998877665554
Q ss_pred C
Q 006249 351 P 351 (654)
Q Consensus 351 p 351 (654)
|
T Consensus 342 ~ 342 (384)
T smart00812 342 P 342 (384)
T ss_pred C
Confidence 4
No 50
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=95.22 E-value=0.023 Score=63.46 Aligned_cols=97 Identities=19% Similarity=0.291 Sum_probs=73.9
Q ss_pred cccHHHHHHHHHHCCCCEEEEcccCCCCCCCCc--eeeccccchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCccc
Q 006249 55 PEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRN--QYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWL 132 (654)
Q Consensus 55 ~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G--~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL 132 (654)
-..++++++.||+||+|+.|+-|-|+..-|..+ +.|=.|-.--+++|+.|.++||.-++-.- .=-+|.||
T Consensus 58 YhrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~--------Hfd~P~~L 129 (460)
T COG2723 58 YHRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLY--------HFDLPLWL 129 (460)
T ss_pred hhhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec--------ccCCcHHH
Confidence 345789999999999999999999999999654 58888999999999999999999877652 23489999
Q ss_pred ccC-CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 006249 133 HFI-PGIQFRTDNEPFKAEMQRFTAKIVDMMK 163 (654)
Q Consensus 133 ~~~-p~~~~R~~d~~y~~~~~~~~~~l~~~i~ 163 (654)
.+. -|- .|..-.++..+|.+.+++++.
T Consensus 130 ~~~ygGW----~nR~~i~~F~~ya~~vf~~f~ 157 (460)
T COG2723 130 QKPYGGW----ENRETVDAFARYAATVFERFG 157 (460)
T ss_pred hhccCCc----cCHHHHHHHHHHHHHHHHHhc
Confidence 874 343 233444455555555555555
No 51
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=94.62 E-value=0.023 Score=63.07 Aligned_cols=157 Identities=14% Similarity=0.162 Sum_probs=110.4
Q ss_pred cEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCCC-CC---CCceeec-cccchHHHHHHHHHHc
Q 006249 33 AVVIGGKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLH-EP---VRNQYNF-EGRYDLVKFVKLVAEA 107 (654)
Q Consensus 33 ~~~idG~p~~~~sG~iHy~R~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~h-Ep---~~G~~dF-~g~~dl~~fl~la~~~ 107 (654)
.|.++++++..++..--++++..++-+++|+-|+.+|+++++.. .+- |+ ++|.-+- ++..-++.|++.|..+
T Consensus 3 ~F~Lg~n~wprIanikmw~~~~~~ei~~dle~a~~vg~k~lR~f---iLDgEdc~d~~G~~na~s~~~y~~~fla~a~~l 79 (587)
T COG3934 3 VFALGLNRWPRIANIKMWPAIGNREIKADLEPAGFVGVKDLRLF---ILDGEDCRDKEGYRNAGSNVWYAAWFLAPAGYL 79 (587)
T ss_pred eEEeccccchhhhhhhHHHHhhhhhhhcccccccCccceeEEEE---EecCcchhhhhceecccccHHHHHHHhhhcccC
Confidence 48888888888887777888888888899999999999999995 344 65 3343332 2345899999999999
Q ss_pred CcEEEEecCcccccccCCCCCC---ccccc-CCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeeccccc
Q 006249 108 GLYAHLRIGPYVCAEWNFGGFP---LWLHF-IPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENE 183 (654)
Q Consensus 108 GL~Vilr~GPyi~aEw~~GG~P---~WL~~-~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QIENE 183 (654)
+|+|+++. |.+-=..||.- .|... .|+-.+ -|+.++..-++|+..+++-.+ ....|.+|-+-||
T Consensus 80 ~lkvlitl---ivg~~hmgg~Nw~Ipwag~~~pdn~i--yD~k~~~~~kkyvedlVk~yk-------~~ptI~gw~l~Ne 147 (587)
T COG3934 80 DLKVLITL---IVGLKHMGGTNWRIPWAGEQSPDNVI--YDPKFRGPGKKYVEDLVKPYK-------LDPTIAGWALRNE 147 (587)
T ss_pred cceEEEEE---eecccccCcceeEeecCCCCCccccc--cchhhcccHHHHHHHHhhhhc-------cChHHHHHHhcCC
Confidence 99998875 44433456642 24422 343212 266677777788777766444 4458999999999
Q ss_pred ccccccccCcccHHHHHHHHHHHh
Q 006249 184 YGNIDSAYGAAGKSYIKWAAGMAL 207 (654)
Q Consensus 184 yg~~~~~~g~~~~~y~~~l~~~~~ 207 (654)
.... -..++..+++|++.|.-
T Consensus 148 --~lv~-~p~s~N~f~~w~~emy~ 168 (587)
T COG3934 148 --PLVE-APISVNNFWDWSGEMYA 168 (587)
T ss_pred --cccc-ccCChhHHHHHHHHHHH
Confidence 2211 12367789999999873
No 52
>PRK09936 hypothetical protein; Provisional
Probab=94.03 E-value=1.1 Score=47.40 Aligned_cols=57 Identities=23% Similarity=0.338 Sum_probs=46.4
Q ss_pred CCCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeecccc-chHHHHHHHHHHcCcEEEEe
Q 006249 52 RSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGR-YDLVKFVKLVAEAGLYAHLR 114 (654)
Q Consensus 52 R~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~-~dl~~fl~la~~~GL~Vilr 114 (654)
+++++.|+++++.+++.||+|+=+ =|.-- |.=||.+. -.|.+.++.|++.||.|++-
T Consensus 34 ~~~~~qWq~~~~~~~~~G~~tLiv--QWt~y----G~~~fg~~~g~La~~l~~A~~~Gl~v~vG 91 (296)
T PRK09936 34 QVTDTQWQGLWSQLRLQGFDTLVV--QWTRY----GDADFGGQRGWLAKRLAAAQQAGLKLVVG 91 (296)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEE--Eeeec----cCCCcccchHHHHHHHHHHHHcCCEEEEc
Confidence 679999999999999999998754 35433 11188764 49999999999999999884
No 53
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=93.57 E-value=0.43 Score=57.47 Aligned_cols=120 Identities=19% Similarity=0.191 Sum_probs=86.7
Q ss_pred CcCCCchhhhhc-CCCCCcceEEEEEEeccCCCcccccCCCceEEEEccccceEEEEECCEEEEEEEcCcCCceEEEecc
Q 006249 459 AFTKPGLLEQIN-TTADQSDYLWYSLSTNIKADEPLLEDGSKTVLHVQSLGHALHAFINGKLVGSGYGSSSNAKVTVDFP 537 (654)
Q Consensus 459 ~~~~p~~~Eqlg-~T~d~~GyvWYrT~i~~~~~~~~~~~g~~~~L~l~~~~d~~~VfVNG~~vGt~~g~~~~~~~~~~~~ 537 (654)
+...|.+|+..+ .-++.+.-++|.+++.++... .+....|.+......+.||+||+.+++..+.+. .|.+..+
T Consensus 44 ~i~VP~~w~~~~~~~~~~~~~~~y~~~~~~~~~~----~~~~~~l~f~~~~~~~~v~~ng~~~l~~eg~~~--~fev~vn 117 (808)
T COG3250 44 AIAVPGNWQDQGEYDRPIYTNVWYPREVFPPKVP----AGNRIGLYFDAVDTLAKVWLNGQEVLEFQGVYT--PFEVDVT 117 (808)
T ss_pred CccCCccHhhcCccCcceecceeeeecccCCccc----cCCceEEEEeccccceeEEeCCeEEEEecCcee--EEEEeec
Confidence 344677888877 546677779999998776542 567789999999999999999999999998874 5777766
Q ss_pred cccCCCccEEEEEEee-------cC--c----ccc---cCCc---c-ccccceecceEEeccCCCce
Q 006249 538 IALAPGKNTFDLLSLT-------VG--L----QNY---GAFY---E-KTGAGITGPVQLKGSGNGTN 584 (654)
Q Consensus 538 v~Lk~G~N~L~ILv~n-------~G--r----~Ny---G~~~---e-~~~kGI~g~V~L~g~~~g~~ 584 (654)
..+..+.|.+.+-++. -| . +-+ |... + .+.+||..+|.|..++.+..
T Consensus 118 g~~v~~~~~~~~~~~~dis~~~~~~~~~~~~~v~~~~~~~~~~~~d~~r~aGi~RdV~l~i~p~~~~ 184 (808)
T COG3250 118 GPYVGGGKDSRITVEFDISPNLQTGPNGLVVTVENWSKGSYYEDQDFFRYAGIHRDVMLYITPNTHV 184 (808)
T ss_pred cceecCCcceEEEEeeccccccccCCccCceEEeccCCCCCccccCeeecccccceeEEEEccceeE
Confidence 6667777777776666 11 0 001 1111 1 36789999999987766643
No 54
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=93.53 E-value=0.38 Score=47.20 Aligned_cols=95 Identities=17% Similarity=0.233 Sum_probs=46.1
Q ss_pred ceEEEEccccceEEEEECCEEEEEEE-----cCcCCce--EEEecccccCCCccEEEEEEeecCcccccC-------Ccc
Q 006249 499 KTVLHVQSLGHALHAFINGKLVGSGY-----GSSSNAK--VTVDFPIALAPGKNTFDLLSLTVGLQNYGA-------FYE 564 (654)
Q Consensus 499 ~~~L~l~~~~d~~~VfVNG~~vGt~~-----g~~~~~~--~~~~~~v~Lk~G~N~L~ILv~n~Gr~NyG~-------~~e 564 (654)
+++|.|.. ..+-.+||||+.||... ..+..+. -+++..-.|++|+|+|.|++-+.+-..... .+
T Consensus 5 ~A~l~isa-~g~Y~l~vNG~~V~~~~l~P~~t~y~~~~~Y~tyDVt~~L~~G~N~iav~lg~gw~~~~~~~~~~~~~~~- 82 (172)
T PF08531_consen 5 SARLYISA-LGRYELYVNGERVGDGPLAPGWTDYDKRVYYQTYDVTPYLRPGENVIAVWLGNGWYNGRIGFGGFPRARY- 82 (172)
T ss_dssp --EEEEEE-ESEEEEEETTEEEEEE--------BTTEEEEEEEE-TTT--TTEEEEEEEEEE--S----------BTTB-
T ss_pred EEEEEEEe-CeeEEEEECCEEeeCCccccccccCCCceEEEEEeChHHhCCCCCEEEEEEeCCcccccccccccccccc-
Confidence 45777755 56788999999999765 1111111 134555568999999999998765221110 11
Q ss_pred ccccceecceEEeccCCCceecC-CCCCeeEEe
Q 006249 565 KTGAGITGPVQLKGSGNGTNIDL-SSQQWTYQT 596 (654)
Q Consensus 565 ~~~kGI~g~V~L~g~~~g~~~dL-s~~~W~Ykv 596 (654)
....++.-.+.+.. .+|+..-| |.+.|+..-
T Consensus 83 ~~~~~l~~~l~i~~-~DG~~~~i~TD~sW~~~~ 114 (172)
T PF08531_consen 83 GGRPALLAQLEITY-ADGTTEVIVTDESWKCSD 114 (172)
T ss_dssp ----EEEEEEEE----TTEEEE-E-STTSEEE-
T ss_pred CCCceeEEEEEEEe-cCCCEEEeccCCCeeeec
Confidence 12334443344422 34533223 678899983
No 55
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=93.12 E-value=1.7 Score=51.04 Aligned_cols=151 Identities=18% Similarity=0.162 Sum_probs=78.6
Q ss_pred HHHHHCCCCEEEE-cccCCCCCCCCcee----------eccccchHHHHHHHHHHcCcEEEEecCccccc-----ccCCC
Q 006249 63 QKSKDGGLDVIET-YVFWNLHEPVRNQY----------NFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCA-----EWNFG 126 (654)
Q Consensus 63 ~k~Ka~G~N~V~t-yv~Wn~hEp~~G~~----------dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~a-----Ew~~G 126 (654)
.-+|++|+|+|+. .|+..-....= -| .|.+..||.+||+.|+++||.|||-.=+-=++ -+.+.
T Consensus 164 dyl~~LGvt~i~L~Pi~e~~~~~~w-GY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~ 242 (613)
T TIGR01515 164 PYVKELGFTHIELLPVAEHPFDGSW-GYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWVPGHFPKDDHGLAEFD 242 (613)
T ss_pred HHHHHcCCCEEEECCcccCCCCCCC-CCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecccCcCCccchhhccC
Confidence 7779999999998 77653211100 12 34556799999999999999999985332121 12223
Q ss_pred CCCcccccCCC---------eeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecc--------ccccccccc
Q 006249 127 GFPLWLHFIPG---------IQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQI--------ENEYGNIDS 189 (654)
Q Consensus 127 G~P~WL~~~p~---------~~~R~~d~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QI--------ENEyg~~~~ 189 (654)
|.|.|...++. ..+-..+|.-++++...++..++...=+.+-..-=..++.++- .||++..
T Consensus 243 ~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~iDG~R~D~v~~~~~~~~~~~~~~~~~~~~~~~-- 320 (613)
T TIGR01515 243 GTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYHIDGLRVDAVASMLYLDYSRDEGEWSPNEDGGR-- 320 (613)
T ss_pred CCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCcEEEEcCHHHhhhhccccccccccccccCCc--
Confidence 33434322111 0122334544444333333333321111222221122332221 2444321
Q ss_pred ccCcccHHHHHHHHHHHhhcCCCcceEE
Q 006249 190 AYGAAGKSYIKWAAGMALSLDTGVPWVM 217 (654)
Q Consensus 190 ~~g~~~~~y~~~l~~~~~~~g~~vP~~~ 217 (654)
....+.+|++.+.+.+++...++-++.
T Consensus 321 -~~~~~~~fl~~~~~~v~~~~p~~~lia 347 (613)
T TIGR01515 321 -ENLEAVDFLRKLNQTVYEAFPGVVTIA 347 (613)
T ss_pred -CChHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 112457899999999998777765554
No 56
>smart00642 Aamy Alpha-amylase domain.
Probab=91.81 E-value=0.44 Score=46.53 Aligned_cols=66 Identities=15% Similarity=0.107 Sum_probs=45.6
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCCCC-------CCCcee-----eccccchHHHHHHHHHHcCcEEEEecCcccccc
Q 006249 57 MWPDLIQKSKDGGLDVIETYVFWNLHE-------PVRNQY-----NFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAE 122 (654)
Q Consensus 57 ~W~~~l~k~Ka~G~N~V~tyv~Wn~hE-------p~~G~~-----dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aE 122 (654)
-+.+.|.-+|++|+|+|.+-=++...+ -.+..| .|....++.+|++.|+++||.||+-.=|-=++.
T Consensus 20 gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 20 GIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHTSD 97 (166)
T ss_pred HHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 355667779999999999843332221 111222 345568999999999999999999875544444
No 57
>PRK14706 glycogen branching enzyme; Provisional
Probab=91.76 E-value=3.2 Score=49.08 Aligned_cols=54 Identities=15% Similarity=0.091 Sum_probs=35.6
Q ss_pred HHHHHHCCCCEEEE-ccc-------CCCCCCC--CceeeccccchHHHHHHHHHHcCcEEEEec
Q 006249 62 IQKSKDGGLDVIET-YVF-------WNLHEPV--RNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (654)
Q Consensus 62 l~k~Ka~G~N~V~t-yv~-------Wn~hEp~--~G~~dF~g~~dl~~fl~la~~~GL~Vilr~ 115 (654)
+.-+|++|+|+|+. .|. |...--- .=.=.|....||.+|++.|+++||.|||-.
T Consensus 174 ~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~ 237 (639)
T PRK14706 174 GEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDW 237 (639)
T ss_pred HHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 36689999999996 331 2211000 000013345799999999999999999874
No 58
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=91.59 E-value=2.8 Score=43.82 Aligned_cols=131 Identities=16% Similarity=0.229 Sum_probs=78.3
Q ss_pred cccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEE-EecCcccccccCCCCCCcccc
Q 006249 55 PEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAH-LRIGPYVCAEWNFGGFPLWLH 133 (654)
Q Consensus 55 ~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vi-lr~GPyi~aEw~~GG~P~WL~ 133 (654)
...|++.|+.++++|++.|+..+ +..| ..+...+++ ..++..+.++++++||.|. +.+++ .+.+|
T Consensus 15 ~~~~~e~l~~~~~~G~~~VEl~~-~~~~-~~~~~~~~~-~~~~~~~~~~l~~~gl~i~~~~~~~-------~~~~~---- 80 (279)
T TIGR00542 15 GECWLERLQLAKTCGFDFVEMSV-DETD-DRLSRLDWS-REQRLALVNAIIETGVRIPSMCLSA-------HRRFP---- 80 (279)
T ss_pred CCCHHHHHHHHHHcCCCEEEEec-CCcc-chhhccCCC-HHHHHHHHHHHHHcCCCceeeecCC-------CccCc----
Confidence 46699999999999999999943 2222 223344554 3578899999999999874 43321 11111
Q ss_pred cCCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccccccccC---cccHHHHHHHHHHHhhcC
Q 006249 134 FIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSAYG---AAGKSYIKWAAGMALSLD 210 (654)
Q Consensus 134 ~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QIENEyg~~~~~~g---~~~~~y~~~l~~~~~~~g 210 (654)
+-..|+.-+++..+.+++.++..+ .+ |.++|.+- ..++.. ..... ..-.+.++.|.+++++.|
T Consensus 81 ------l~~~~~~~r~~~~~~~~~~i~~a~--~l----G~~~v~~~-~~~~~~-~~~~~~~~~~~~~~l~~l~~~A~~~G 146 (279)
T TIGR00542 81 ------LGSKDKAVRQQGLEIMEKAIQLAR--DL----GIRTIQLA-GYDVYY-EEHDEETRRRFREGLKEAVELAARAQ 146 (279)
T ss_pred ------CCCcCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEec-Cccccc-CcCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 122356666666677777777777 33 56766542 111100 00000 012246677788888888
Q ss_pred CCc
Q 006249 211 TGV 213 (654)
Q Consensus 211 ~~v 213 (654)
+.+
T Consensus 147 v~l 149 (279)
T TIGR00542 147 VTL 149 (279)
T ss_pred CEE
Confidence 865
No 59
>PRK05402 glycogen branching enzyme; Provisional
Probab=91.51 E-value=2.1 Score=51.30 Aligned_cols=54 Identities=22% Similarity=0.189 Sum_probs=37.2
Q ss_pred HHHHHHCCCCEEEE-cccCC----CCCCCCcee-----eccccchHHHHHHHHHHcCcEEEEec
Q 006249 62 IQKSKDGGLDVIET-YVFWN----LHEPVRNQY-----NFEGRYDLVKFVKLVAEAGLYAHLRI 115 (654)
Q Consensus 62 l~k~Ka~G~N~V~t-yv~Wn----~hEp~~G~~-----dF~g~~dl~~fl~la~~~GL~Vilr~ 115 (654)
|.-+|++|+|+|.. +|+=. .|--.+.-| .|.+..||.+|++.|+++||.|||-.
T Consensus 272 ~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~ 335 (726)
T PRK05402 272 IPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDW 335 (726)
T ss_pred HHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 36679999999997 45310 011111111 24556799999999999999999984
No 60
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.50 E-value=1.7 Score=48.47 Aligned_cols=122 Identities=18% Similarity=0.243 Sum_probs=81.5
Q ss_pred CcccHHHHHHHHHHCCCCEEEEc-------------ccCCCCCCCCceee-ccccchHHHHHHHHHHcCcEEEEecCccc
Q 006249 54 TPEMWPDLIQKSKDGGLDVIETY-------------VFWNLHEPVRNQYN-FEGRYDLVKFVKLVAEAGLYAHLRIGPYV 119 (654)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~N~V~ty-------------v~Wn~hEp~~G~~d-F~g~~dl~~fl~la~~~GL~Vilr~GPyi 119 (654)
.+.+-.+.|.+++++|+|||-.- .+|..-. ||.+- =.|..-|...|++|++.||.|+.+.=||.
T Consensus 62 ~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~--~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~~ 139 (418)
T COG1649 62 QRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGL--PGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPYR 139 (418)
T ss_pred cHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCc--CcccCCCCCCChHHHHHHHHHhcCCeeeechhhcc
Confidence 67788899999999999999632 2233222 44432 23555788999999999999999998887
Q ss_pred ccccCCCC---CCccccc-CCCee-eecCC-------hhHHHHHHHHHHH-HHHHHHhcccccccCCceEeeccccccc
Q 006249 120 CAEWNFGG---FPLWLHF-IPGIQ-FRTDN-------EPFKAEMQRFTAK-IVDMMKQEKLYASQGGPIILSQIENEYG 185 (654)
Q Consensus 120 ~aEw~~GG---~P~WL~~-~p~~~-~R~~d-------~~y~~~~~~~~~~-l~~~i~~~~l~~~~gGpII~~QIENEyg 185 (654)
.|--..-. -|.|+.. .|+.. .|... .+..-+++.|+.. +++.++++ .|-++|.+-=++
T Consensus 140 ~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~Y--------dvDGIQfDd~fy 210 (418)
T COG1649 140 MAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNY--------DVDGIQFDDYFY 210 (418)
T ss_pred cCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCC--------CCCceecceeec
Confidence 66422221 2677765 24432 33332 2445678888888 56666644 577889876655
No 61
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=91.06 E-value=1.5 Score=47.19 Aligned_cols=118 Identities=17% Similarity=0.199 Sum_probs=71.5
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCC-------CCCCC-------CceeeccccchHHHHHHHHHHcCcEEEEecCccc
Q 006249 54 TPEMWPDLIQKSKDGGLDVIETYVFWN-------LHEPV-------RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYV 119 (654)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn-------~hEp~-------~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi 119 (654)
.++.-++.|++++++|+|+|=.-|-+. -.+|. +|. + -|..-|..+|+.|++.||.|+.+. .+-
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~-~-pg~DpL~~~I~eaHkrGlevHAW~-~~~ 93 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGK-D-PGFDPLEFMIEEAHKRGLEVHAWF-RVG 93 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCC-C-CCccHHHHHHHHHHHcCCEEEEEE-Eee
Confidence 677788999999999999997655443 22221 111 1 122379999999999999999776 111
Q ss_pred ccccCC----CCCCcccc-cCCCeeeec----CCh----hHHHHHHHHHHHHHHHH-HhcccccccCCceEeecccc
Q 006249 120 CAEWNF----GGFPLWLH-FIPGIQFRT----DNE----PFKAEMQRFTAKIVDMM-KQEKLYASQGGPIILSQIEN 182 (654)
Q Consensus 120 ~aEw~~----GG~P~WL~-~~p~~~~R~----~d~----~y~~~~~~~~~~l~~~i-~~~~l~~~~gGpII~~QIEN 182 (654)
...-.. -..|.|+. +.|+..... .+. +-..+|+.|+..++..| +++ +|=++|++-
T Consensus 94 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Y--------dvDGIhlDd 162 (311)
T PF02638_consen 94 FNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNY--------DVDGIHLDD 162 (311)
T ss_pred cCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcC--------CCCeEEecc
Confidence 110011 12478876 456532322 111 12467888887766655 433 466778773
No 62
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=90.89 E-value=4.3 Score=48.71 Aligned_cols=61 Identities=15% Similarity=0.175 Sum_probs=43.3
Q ss_pred ccHHHHHHHHHHCCCCEEEE-ccc-------CCCCCC---CCceeeccccchHHHHHHHHHHcCcEEEEecCc
Q 006249 56 EMWPDLIQKSKDGGLDVIET-YVF-------WNLHEP---VRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGP 117 (654)
Q Consensus 56 ~~W~~~l~k~Ka~G~N~V~t-yv~-------Wn~hEp---~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GP 117 (654)
+.|++.|..+|++|+|+|+. .|+ |.++-. .+ .-.|....+|.+||+.|+++||.|||-.=|
T Consensus 251 ~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~-~~~~Gtp~dlk~LVd~aH~~GI~VilDvV~ 322 (758)
T PLN02447 251 EFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAV-SSRSGTPEDLKYLIDKAHSLGLRVLMDVVH 322 (758)
T ss_pred HHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccc-ccccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 34788899999999999997 221 322210 00 113455679999999999999999998543
No 63
>PRK12568 glycogen branching enzyme; Provisional
Probab=90.19 E-value=5.3 Score=47.86 Aligned_cols=56 Identities=21% Similarity=0.268 Sum_probs=39.7
Q ss_pred HHHHHHHCCCCEEEE-ccc-------CCCCCCCCcee----eccccchHHHHHHHHHHcCcEEEEecCcc
Q 006249 61 LIQKSKDGGLDVIET-YVF-------WNLHEPVRNQY----NFEGRYDLVKFVKLVAEAGLYAHLRIGPY 118 (654)
Q Consensus 61 ~l~k~Ka~G~N~V~t-yv~-------Wn~hEp~~G~~----dF~g~~dl~~fl~la~~~GL~Vilr~GPy 118 (654)
.|.-+|++|+|+|+. .|+ |.+.- -|-| .|....++.+|++.|+++||.|||-.=|-
T Consensus 275 ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~--~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~n 342 (730)
T PRK12568 275 LIPYVQQLGFTHIELLPITEHPFGGSWGYQP--LGLYAPTARHGSPDGFAQFVDACHRAGIGVILDWVSA 342 (730)
T ss_pred HHHHHHHcCCCEEEECccccCCCCCCCCCCC--CcCCccCcccCCHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 467789999999997 342 32210 0112 34556799999999999999999985443
No 64
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=89.89 E-value=1.6 Score=49.74 Aligned_cols=69 Identities=20% Similarity=0.339 Sum_probs=43.8
Q ss_pred EEEeeCCCCCcccHHHHHHHHH-HCCCCEEEEc-cc---CCCC-C-CCCc--eeeccccchHHHHHHHHHHcCcEEEEec
Q 006249 45 SGSIHYPRSTPEMWPDLIQKSK-DGGLDVIETY-VF---WNLH-E-PVRN--QYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (654)
Q Consensus 45 sG~iHy~R~~~~~W~~~l~k~K-a~G~N~V~ty-v~---Wn~h-E-p~~G--~~dF~g~~dl~~fl~la~~~GL~Vilr~ 115 (654)
-|.-|..-...+.|+..|+.++ +.|+.-||+. +| .... | ..+| .|||+ .|+.+++...++||+-++..
T Consensus 28 ~~~g~a~~~l~~~~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~---~lD~i~D~l~~~g~~P~vel 104 (486)
T PF01229_consen 28 VGSGRANLLLRADWQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFT---YLDQILDFLLENGLKPFVEL 104 (486)
T ss_dssp EEES-GGGGGBHHHHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE--H---HHHHHHHHHHHCT-EEEEEE
T ss_pred cCCCchHHHhhHHHHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCChH---HHHHHHHHHHHcCCEEEEEE
Confidence 3444554557778999998886 8999999983 22 1111 1 1223 39999 99999999999999988887
Q ss_pred C
Q 006249 116 G 116 (654)
Q Consensus 116 G 116 (654)
|
T Consensus 105 ~ 105 (486)
T PF01229_consen 105 G 105 (486)
T ss_dssp -
T ss_pred E
Confidence 6
No 65
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=89.22 E-value=4 Score=42.57 Aligned_cols=98 Identities=11% Similarity=0.152 Sum_probs=59.6
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHc-CcEEEEecCcccccccCCCCCCccccc
Q 006249 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEA-GLYAHLRIGPYVCAEWNFGGFPLWLHF 134 (654)
Q Consensus 56 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~-GL~Vilr~GPyi~aEw~~GG~P~WL~~ 134 (654)
..|++.|+.+|++|++.|+.-+....-.. .......++..+.++++++ ++.+.+- +||.
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~i~~~-~~~~--------------- 69 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWL----SRPLKKERAEKFKAIAEEGPSICLSVH-APYL--------------- 69 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccC----CCCCCHHHHHHHHHHHHHcCCCcEEEE-cCce---------------
Confidence 67999999999999999999654321111 1112456899999999999 7666543 2331
Q ss_pred CCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccc
Q 006249 135 IPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIEN 182 (654)
Q Consensus 135 ~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QIEN 182 (654)
..+...++.-+++....+++.++..+ .+ |-+.|.+...+
T Consensus 70 ---~~~~~~~~~~r~~~~~~~~~~i~~A~--~l----G~~~v~~~~g~ 108 (279)
T cd00019 70 ---INLASPDKEKREKSIERLKDEIERCE--EL----GIRLLVFHPGS 108 (279)
T ss_pred ---eccCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEECCCC
Confidence 01223344444555555566666666 22 45666665543
No 66
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=88.72 E-value=0.65 Score=50.92 Aligned_cols=72 Identities=26% Similarity=0.268 Sum_probs=49.3
Q ss_pred EEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEEecCccccc
Q 006249 44 ISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCA 121 (654)
Q Consensus 44 ~sG~iHy~R~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~a 121 (654)
++=++.+...+.+.....|++|++.|+..|=| ++|.|+...=+. ...+..++++|+++||.|++-+.|=+..
T Consensus 2 lGiSvY~~~~~~~~~~~yi~~a~~~Gf~~iFT----SL~ipe~~~~~~--~~~~~~l~~~a~~~~~~v~~Disp~~l~ 73 (357)
T PF05913_consen 2 LGISVYPGQSSFEENKAYIEKAAKYGFKRIFT----SLHIPEDDPEDY--LERLKELLKLAKELGMEVIADISPKVLK 73 (357)
T ss_dssp EEEEE-CCCS-HHHHHHHHHHHHCTTEEEEEE----EE---------H--HHHHHHHHHHHHHCT-EEEEEE-CCHHH
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEC----CCCcCCCCHHHH--HHHHHHHHHHHHHCCCEEEEECCHHHHH
Confidence 45567777778889999999999999999888 999998532221 2378899999999999999999875433
No 67
>PRK14705 glycogen branching enzyme; Provisional
Probab=88.67 E-value=7.7 Score=49.03 Aligned_cols=55 Identities=20% Similarity=0.205 Sum_probs=38.1
Q ss_pred HHHHHHHCCCCEEEE-ccc-------CCCCCC--CCceeeccccchHHHHHHHHHHcCcEEEEec
Q 006249 61 LIQKSKDGGLDVIET-YVF-------WNLHEP--VRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (654)
Q Consensus 61 ~l~k~Ka~G~N~V~t-yv~-------Wn~hEp--~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~ 115 (654)
.|.-+|++|+|+|+. .|+ |.+.-- ..=.=.|.+..||.+||+.|+++||.|||-.
T Consensus 771 lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~ 835 (1224)
T PRK14705 771 LVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDW 835 (1224)
T ss_pred HHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 468899999999997 442 321100 0000124456799999999999999999884
No 68
>PLN03059 beta-galactosidase; Provisional
Probab=88.54 E-value=0.71 Score=55.47 Aligned_cols=67 Identities=21% Similarity=0.353 Sum_probs=49.4
Q ss_pred eEEEEEEeccCCCcccccCCCceEEEEccccceEEEEECCEEEEEEEc---------------------------CcCCc
Q 006249 478 YLWYSLSTNIKADEPLLEDGSKTVLHVQSLGHALHAFINGKLVGSGYG---------------------------SSSNA 530 (654)
Q Consensus 478 yvWYrT~i~~~~~~~~~~~g~~~~L~l~~~~d~~~VfVNG~~vGt~~g---------------------------~~~~~ 530 (654)
..||+++|+++... ....|.+.+.+- -+|||||+-+|.-.- +...+
T Consensus 620 ~twYK~~Fd~p~g~------Dpv~LDm~gmGK-G~aWVNG~nIGRYW~~~a~~~gC~~c~y~g~~~~~kc~~~cggP~q~ 692 (840)
T PLN03059 620 LTWYKTTFDAPGGN------DPLALDMSSMGK-GQIWINGQSIGRHWPAYTAHGSCNGCNYAGTFDDKKCRTNCGEPSQR 692 (840)
T ss_pred ceEEEEEEeCCCCC------CCEEEecccCCC-eeEEECCcccccccccccccCCCccccccccccchhhhccCCCceeE
Confidence 79999999987422 347888888764 469999999997551 22234
Q ss_pred eEEEecccccCCCccEEEEEEe
Q 006249 531 KVTVDFPIALAPGKNTFDLLSL 552 (654)
Q Consensus 531 ~~~~~~~v~Lk~G~N~L~ILv~ 552 (654)
-|-+|.+. |++|+|.|.|.=+
T Consensus 693 lYHVPr~~-Lk~g~N~lViFEe 713 (840)
T PLN03059 693 WYHVPRSW-LKPSGNLLIVFEE 713 (840)
T ss_pred EEeCcHHH-hccCCceEEEEEe
Confidence 46688876 8999999977654
No 69
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=88.49 E-value=4.3 Score=42.20 Aligned_cols=131 Identities=17% Similarity=0.217 Sum_probs=75.9
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEE-ecCcccccccCCCCCCccccc
Q 006249 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHL-RIGPYVCAEWNFGGFPLWLHF 134 (654)
Q Consensus 56 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vil-r~GPyi~aEw~~GG~P~WL~~ 134 (654)
-.|++.++.++++|++.|+..+. ..|+ .....+|+ ..++..+-++++++||.|.. .++. .+ .+|
T Consensus 16 ~~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~Gl~i~~~~~~~----~~---~~~----- 80 (284)
T PRK13210 16 LSWEERLVFAKELGFDFVEMSVD-ESDE-RLARLDWS-KEERLSLVKAIYETGVRIPSMCLSG----HR---RFP----- 80 (284)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC-Cccc-ccccccCC-HHHHHHHHHHHHHcCCCceEEeccc----cc---CcC-----
Confidence 36999999999999999999532 2221 01122343 34789999999999998753 2220 00 011
Q ss_pred CCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccccc--cccCcccHHHHHHHHHHHhhcCCC
Q 006249 135 IPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNID--SAYGAAGKSYIKWAAGMALSLDTG 212 (654)
Q Consensus 135 ~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QIENEyg~~~--~~~g~~~~~y~~~l~~~~~~~g~~ 212 (654)
+.+.|+..+++..+.++++++..+ .+ |.++|.+---..+.... ..+ ..-.+.++.+.+++++.|+.
T Consensus 81 -----~~~~d~~~r~~~~~~~~~~i~~a~--~l----G~~~v~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~a~~~gv~ 148 (284)
T PRK13210 81 -----FGSRDPATRERALEIMKKAIRLAQ--DL----GIRTIQLAGYDVYYEEKSEETR-QRFIEGLAWAVEQAAAAQVM 148 (284)
T ss_pred -----CCCCCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEECCcccccccccHHHH-HHHHHHHHHHHHHHHHhCCE
Confidence 233566666666667777777666 33 55666542100000000 000 11235678888889888886
Q ss_pred c
Q 006249 213 V 213 (654)
Q Consensus 213 v 213 (654)
+
T Consensus 149 l 149 (284)
T PRK13210 149 L 149 (284)
T ss_pred E
Confidence 5
No 70
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=86.06 E-value=11 Score=41.79 Aligned_cols=138 Identities=15% Similarity=0.158 Sum_probs=73.1
Q ss_pred CcccHHHHHHHHHHCCCCEEEEc----ccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEE-ecCcccccccCCCCC
Q 006249 54 TPEMWPDLIQKSKDGGLDVIETY----VFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHL-RIGPYVCAEWNFGGF 128 (654)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~N~V~ty----v~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vil-r~GPyi~aEw~~GG~ 128 (654)
++....+++++++++|+..|+.. ++|..-+.+ -..++.++-++++++||.|.. -++-+.+..+..|+
T Consensus 30 ~~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e-------~~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~~~g~- 101 (382)
T TIGR02631 30 TALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQE-------RDQIVRRFKKALDETGLKVPMVTTNLFSHPVFKDGG- 101 (382)
T ss_pred CCcCHHHHHHHHHHhCCCEEEecccccCCCCCChhH-------HHHHHHHHHHHHHHhCCeEEEeeccccCCccccCCC-
Confidence 34457799999999999999973 222211100 023578999999999999753 33211111222222
Q ss_pred CcccccCCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccc---cccccccccCc---ccHHHHHHH
Q 006249 129 PLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIEN---EYGNIDSAYGA---AGKSYIKWA 202 (654)
Q Consensus 129 P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QIEN---Eyg~~~~~~g~---~~~~y~~~l 202 (654)
+-+.|+..+++.-+.+++.++.-+ .+ |.+.|.+--.- ||... ..+.. .-.+.++.|
T Consensus 102 -----------las~d~~vR~~ai~~~kraId~A~--eL----Ga~~v~v~~G~~g~~~~~~-~d~~~a~~~~~e~L~~l 163 (382)
T TIGR02631 102 -----------FTSNDRSVRRYALRKVLRNMDLGA--EL----GAETYVVWGGREGAEYDGA-KDVRAALDRMREALNLL 163 (382)
T ss_pred -----------CCCCCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEEccCCCCCcCccc-cCHHHHHHHHHHHHHHH
Confidence 334567666665555566666555 33 45544332211 12110 00011 122345556
Q ss_pred HHHHhhcCCCcceEE
Q 006249 203 AGMALSLDTGVPWVM 217 (654)
Q Consensus 203 ~~~~~~~g~~vP~~~ 217 (654)
.+.+++.|.+|.+..
T Consensus 164 ae~A~~~G~GV~laL 178 (382)
T TIGR02631 164 AAYAEDQGYGLRFAL 178 (382)
T ss_pred HHHHHhhCCCcEEEE
Confidence 666677776665543
No 71
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=85.78 E-value=1.6 Score=42.61 Aligned_cols=124 Identities=15% Similarity=0.162 Sum_probs=73.9
Q ss_pred HHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccccCCCeeee
Q 006249 62 IQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFR 141 (654)
Q Consensus 62 l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R 141 (654)
|+.++++|+..|+............ ..+++++.++++++||.+..--.+.. + .. +....+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~-------~~~~~~~~~~~~~~gl~i~~~~~~~~---~---~~-------~~~~~~ 60 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEK-------DDEAEELRRLLEDYGLKIASLHPPTN---F---WS-------PDEENG 60 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHH-------HHHHHHHHHHHHHTTCEEEEEEEEES---S---SC-------TGTTST
T ss_pred ChHHHHcCCCEEEEecCCCcccccc-------hHHHHHHHHHHHHcCCeEEEEecccc---c---cc-------cccccc
Confidence 6789999999999965533222211 34799999999999999653221110 1 00 111123
Q ss_pred cCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeeccc--ccccccc--cccCcccHHHHHHHHHHHhhcCCCc
Q 006249 142 TDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIE--NEYGNID--SAYGAAGKSYIKWAAGMALSLDTGV 213 (654)
Q Consensus 142 ~~d~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QIE--NEyg~~~--~~~g~~~~~y~~~l~~~~~~~g~~v 213 (654)
+.+++ .+...+.+.+.++..+ .+ |.+.|.+..- +...... ..+ +.-.+.++.|.+++++.|+.+
T Consensus 61 ~~~~~-r~~~~~~~~~~i~~a~--~l----g~~~i~~~~g~~~~~~~~~~~~~~-~~~~~~l~~l~~~a~~~gv~i 128 (213)
T PF01261_consen 61 SANDE-REEALEYLKKAIDLAK--RL----GAKYIVVHSGRYPSGPEDDTEENW-ERLAENLRELAEIAEEYGVRI 128 (213)
T ss_dssp TSSSH-HHHHHHHHHHHHHHHH--HH----TBSEEEEECTTESSSTTSSHHHHH-HHHHHHHHHHHHHHHHHTSEE
T ss_pred Ccchh-hHHHHHHHHHHHHHHH--Hh----CCCceeecCcccccccCCCHHHHH-HHHHHHHHHHHhhhhhhcceE
Confidence 34444 7777778888888887 33 5677777754 2221110 000 123457788888888888764
No 72
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=85.35 E-value=1.4 Score=50.09 Aligned_cols=60 Identities=8% Similarity=0.237 Sum_probs=42.1
Q ss_pred ccHH---HHHHHHHHCCCCEEEE-cccCCC-----CCCCC-cee-------------eccccchHHHHHHHHHHcCcEEE
Q 006249 56 EMWP---DLIQKSKDGGLDVIET-YVFWNL-----HEPVR-NQY-------------NFEGRYDLVKFVKLVAEAGLYAH 112 (654)
Q Consensus 56 ~~W~---~~l~k~Ka~G~N~V~t-yv~Wn~-----hEp~~-G~~-------------dF~g~~dl~~fl~la~~~GL~Vi 112 (654)
+.|. +.|.-+|++|+++|-+ +++-+. |--.+ .-| .|....||.++|+.|++.||+||
T Consensus 19 ~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi 98 (479)
T PRK09441 19 KLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVY 98 (479)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEE
Confidence 4565 5677789999999987 454432 22111 112 23356799999999999999999
Q ss_pred Eec
Q 006249 113 LRI 115 (654)
Q Consensus 113 lr~ 115 (654)
+-.
T Consensus 99 ~D~ 101 (479)
T PRK09441 99 ADV 101 (479)
T ss_pred EEE
Confidence 986
No 73
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=84.31 E-value=1.1 Score=46.47 Aligned_cols=57 Identities=18% Similarity=0.198 Sum_probs=39.8
Q ss_pred HHHHHHHHHCCCCEEEEcccCCCCCCCCc--eee-------ccccchHHHHHHHHHHcCcEEEEec
Q 006249 59 PDLIQKSKDGGLDVIETYVFWNLHEPVRN--QYN-------FEGRYDLVKFVKLVAEAGLYAHLRI 115 (654)
Q Consensus 59 ~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G--~~d-------F~g~~dl~~fl~la~~~GL~Vilr~ 115 (654)
.+.|.-+|++|+|+|..-=++......-| .-| |....+|.++++.|+++||+|||-.
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEee
Confidence 45688899999999998533332211111 112 3345799999999999999999875
No 74
>PRK01060 endonuclease IV; Provisional
Probab=84.18 E-value=20 Score=37.20 Aligned_cols=93 Identities=13% Similarity=0.259 Sum_probs=59.7
Q ss_pred HHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEE---EEecCcccccccCCCCCCccccc
Q 006249 58 WPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYA---HLRIGPYVCAEWNFGGFPLWLHF 134 (654)
Q Consensus 58 W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~V---ilr~GPyi~aEw~~GG~P~WL~~ 134 (654)
+++.|+.++++|++.|+..+- +-+.-.++.++ ..++.++-++++++||.+ .+ -+||.
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~-~p~~~~~~~~~---~~~~~~lk~~~~~~gl~~~~~~~-h~~~~--------------- 73 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTG-NPQQWKRKPLE---ELNIEAFKAACEKYGISPEDILV-HAPYL--------------- 73 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECC-CCCCCcCCCCC---HHHHHHHHHHHHHcCCCCCceEE-ecceE---------------
Confidence 889999999999999999542 11111121222 226888999999999973 32 23331
Q ss_pred CCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeec
Q 006249 135 IPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQ 179 (654)
Q Consensus 135 ~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~Q 179 (654)
+.+-+.|+..+++..+.+++.++..+ .+ |.++|-+.
T Consensus 74 ---~nl~~~d~~~r~~s~~~~~~~i~~A~--~l----ga~~vv~h 109 (281)
T PRK01060 74 ---INLGNPNKEILEKSRDFLIQEIERCA--AL----GAKLLVFH 109 (281)
T ss_pred ---ecCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEc
Confidence 12334577777777777777777766 33 45555554
No 75
>PRK12313 glycogen branching enzyme; Provisional
Probab=83.88 E-value=2 Score=50.60 Aligned_cols=51 Identities=20% Similarity=0.355 Sum_probs=37.7
Q ss_pred HHHHHHCCCCEEEE-ccc-------CCCC-----CCCCceeeccccchHHHHHHHHHHcCcEEEEec
Q 006249 62 IQKSKDGGLDVIET-YVF-------WNLH-----EPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (654)
Q Consensus 62 l~k~Ka~G~N~V~t-yv~-------Wn~h-----Ep~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~ 115 (654)
|.-+|++|+|+|.. .|+ |... .+.| .|.+..||.+||+.|+++||.|||-.
T Consensus 177 l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~---~~Gt~~d~k~lv~~~H~~Gi~VilD~ 240 (633)
T PRK12313 177 IPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTS---RYGTPEDFMYLVDALHQNGIGVILDW 240 (633)
T ss_pred HHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCC---CCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 58899999999996 443 2110 0111 35566799999999999999999984
No 76
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=83.45 E-value=8.3 Score=41.70 Aligned_cols=62 Identities=24% Similarity=0.344 Sum_probs=44.9
Q ss_pred CcccHHHHHHHHHHCCCCEEEEc-------ccCCCCCCCCceeecc-c-cchHHHHHHHHHHcCcEEEEec
Q 006249 54 TPEMWPDLIQKSKDGGLDVIETY-------VFWNLHEPVRNQYNFE-G-RYDLVKFVKLVAEAGLYAHLRI 115 (654)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~N~V~ty-------v~Wn~hEp~~G~~dF~-g-~~dl~~fl~la~~~GL~Vilr~ 115 (654)
.++.-+..|+.+|+.|+|+|-+- |.+....|..-+..-. . ..|+.++++.++++|||+|.|+
T Consensus 11 ~~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARI 81 (316)
T PF13200_consen 11 SPERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARI 81 (316)
T ss_pred CHHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEE
Confidence 45667889999999999999753 3443333332222211 1 3699999999999999999997
No 77
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=83.07 E-value=22 Score=36.34 Aligned_cols=43 Identities=19% Similarity=0.245 Sum_probs=35.6
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEE
Q 006249 57 MWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHL 113 (654)
Q Consensus 57 ~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vil 113 (654)
.+++.+++++++|++.|+...++ ..++..+.++++++||.|..
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~~--------------~~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFPY--------------DWDAEALKARLAAAGLEQVL 57 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCCc--------------cCCHHHHHHHHHHcCCeEEE
Confidence 48999999999999999985322 13688899999999999864
No 78
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=82.30 E-value=13 Score=40.54 Aligned_cols=139 Identities=17% Similarity=0.248 Sum_probs=89.1
Q ss_pred CCCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHH---HcCcEEEEecCcccccccCCCCC
Q 006249 52 RSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVA---EAGLYAHLRIGPYVCAEWNFGGF 128 (654)
Q Consensus 52 R~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~---~~GL~Vilr~GPyi~aEw~~GG~ 128 (654)
-..|+..+..++.+|+.||+.--.|-.| |.|.+-|++-++..- +.+|...|. |.+-.|.
T Consensus 54 l~~p~v~~~Q~~lA~~~GI~gF~~~~Yw-----------f~gk~lLe~p~~~~l~~~~~d~pFcl~---WAN~~w~---- 115 (345)
T PF14307_consen 54 LRDPEVMEKQAELAKEYGIDGFCFYHYW-----------FNGKRLLEKPLENLLASKEPDFPFCLC---WANENWT---- 115 (345)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEEeee-----------cCCchHHHHHHHHHHhcCCCCCcEEEE---ECCChhh----
Confidence 3478889999999999999999888777 456667777766553 344544443 1222221
Q ss_pred CcccccCCCeeeecCChhHH--HHHHHHHHHHHHHHHhcccccccCCceEeecccccccccccccCcccHHHHHHHHHHH
Q 006249 129 PLWLHFIPGIQFRTDNEPFK--AEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSAYGAAGKSYIKWAAGMA 206 (654)
Q Consensus 129 P~WL~~~p~~~~R~~d~~y~--~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QIENEyg~~~~~~g~~~~~y~~~l~~~~ 206 (654)
=.|-.....+.+- ..|. +..+++++.|.+.+++..+.--+|-||+++=--.+. ++-++.++.+++.|
T Consensus 116 ~~w~g~~~~~l~~---q~y~~~~d~~~~~~~l~~~F~D~rYikVdGKPv~~Iy~p~~~--------pd~~~~~~~wr~~a 184 (345)
T PF14307_consen 116 RRWDGRNNEILIE---QKYSGEDDWKEHFRYLLPYFKDPRYIKVDGKPVFLIYRPGDI--------PDIKEMIERWREEA 184 (345)
T ss_pred hccCCCCcccccc---ccCCchhHHHHHHHHHHHHhCCCCceeECCEEEEEEECcccc--------cCHHHHHHHHHHHH
Confidence 1122221222111 1221 234677788889999887777889999987432222 24578999999999
Q ss_pred hhcCCCcceEEcc
Q 006249 207 LSLDTGVPWVMCQ 219 (654)
Q Consensus 207 ~~~g~~vP~~~~~ 219 (654)
+++|+.-+.+...
T Consensus 185 ~~~G~~giyii~~ 197 (345)
T PF14307_consen 185 KEAGLPGIYIIAV 197 (345)
T ss_pred HHcCCCceEEEEE
Confidence 9999987755433
No 79
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=81.90 E-value=2.5 Score=49.55 Aligned_cols=55 Identities=22% Similarity=0.202 Sum_probs=40.0
Q ss_pred cccHHHHHHHHHHCCCCEEEE-cccCCCCCCCCceee--------------ccccchHHHHHHHHHHcCcEEEEe
Q 006249 55 PEMWPDLIQKSKDGGLDVIET-YVFWNLHEPVRNQYN--------------FEGRYDLVKFVKLVAEAGLYAHLR 114 (654)
Q Consensus 55 ~~~W~~~l~k~Ka~G~N~V~t-yv~Wn~hEp~~G~~d--------------F~g~~dl~~fl~la~~~GL~Vilr 114 (654)
.+.=.+.|.-+|+||+++||. .| + .-||.-+ |..-.||.+||+.|+++||-|||-
T Consensus 164 ~e~a~~llpYl~elG~T~IELMPv--~---e~p~~~sWGYq~~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD 233 (628)
T COG0296 164 FELAIELLPYLKELGITHIELMPV--A---EHPGDRSWGYQGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILD 233 (628)
T ss_pred HHHHHHHhHHHHHhCCCEEEEccc--c---cCCCCCCCCCCcceeccccccCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 344466888999999999997 11 1 1122222 233469999999999999999997
No 80
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=81.09 E-value=13 Score=38.62 Aligned_cols=126 Identities=18% Similarity=0.296 Sum_probs=74.6
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEE-EecCcccccccCCCCCCccccc
Q 006249 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAH-LRIGPYVCAEWNFGGFPLWLHF 134 (654)
Q Consensus 56 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vi-lr~GPyi~aEw~~GG~P~WL~~ 134 (654)
..|++.++.++++|+..|+..+. ..++ ....++++ ..+++.+-++++++||.|. +.++.. ..++
T Consensus 21 ~~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~gl~i~~~~~~~~-------~~~~----- 85 (283)
T PRK13209 21 ECWLEKLAIAKTAGFDFVEMSVD-ESDE-RLARLDWS-REQRLALVNALVETGFRVNSMCLSAH-------RRFP----- 85 (283)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC-cccc-chhccCCC-HHHHHHHHHHHHHcCCceeEEecccc-------cccC-----
Confidence 35999999999999999999532 1111 01122333 2368899999999999875 332210 0011
Q ss_pred CCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccccccccCc-------ccHHHHHHHHHHHh
Q 006249 135 IPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSAYGA-------AGKSYIKWAAGMAL 207 (654)
Q Consensus 135 ~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QIENEyg~~~~~~g~-------~~~~y~~~l~~~~~ 207 (654)
+-+.|+.-++...+.+++.++..+ .+ |.++|.+. +.. ..++. .-.+.++.|.++++
T Consensus 86 -----~~~~~~~~r~~~~~~~~~~i~~a~--~l----G~~~i~~~-----~~~-~~~~~~~~~~~~~~~~~l~~l~~~A~ 148 (283)
T PRK13209 86 -----LGSEDDAVRAQALEIMRKAIQLAQ--DL----GIRVIQLA-----GYD-VYYEQANNETRRRFIDGLKESVELAS 148 (283)
T ss_pred -----CCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEC-----Ccc-ccccccHHHHHHHHHHHHHHHHHHHH
Confidence 113456666666677777777777 33 66776552 110 00111 11346778888888
Q ss_pred hcCCCc
Q 006249 208 SLDTGV 213 (654)
Q Consensus 208 ~~g~~v 213 (654)
+.|+.+
T Consensus 149 ~~GV~i 154 (283)
T PRK13209 149 RASVTL 154 (283)
T ss_pred HhCCEE
Confidence 888754
No 81
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=80.44 E-value=29 Score=35.92 Aligned_cols=131 Identities=13% Similarity=0.096 Sum_probs=72.1
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccccC
Q 006249 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFI 135 (654)
Q Consensus 56 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~ 135 (654)
..+++.|+.++++|++.|+...-.. |+-.+ +++ ..++.++-++++++||.|.. .+|. .+++|..+.
T Consensus 13 ~~l~~~l~~~~~~G~~~vEl~~~~~-~~~~~---~~~-~~~~~~l~~~~~~~gl~v~s-~~~~------~~~~~~~~~-- 78 (275)
T PRK09856 13 LPIEHAFRDASELGYDGIEIWGGRP-HAFAP---DLK-AGGIKQIKALAQTYQMPIIG-YTPE------TNGYPYNMM-- 78 (275)
T ss_pred CCHHHHHHHHHHcCCCEEEEccCCc-ccccc---ccC-chHHHHHHHHHHHcCCeEEE-ecCc------ccCcCcccc--
Confidence 3599999999999999999832110 11111 121 24788999999999999853 2221 123332221
Q ss_pred CCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeeccccc-cc-ccccccCcccHHHHHHHHHHHhhcCCCc
Q 006249 136 PGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENE-YG-NIDSAYGAAGKSYIKWAAGMALSLDTGV 213 (654)
Q Consensus 136 p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QIENE-yg-~~~~~~g~~~~~y~~~l~~~~~~~g~~v 213 (654)
..++.-+++..+.+++.++.-+ . =|.+.|.+-.-.. +. .....+ ..-.+.++.|.+.+.+.|+.+
T Consensus 79 ------~~~~~~r~~~~~~~~~~i~~a~--~----lGa~~i~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~a~~~gv~l 145 (275)
T PRK09856 79 ------LGDEHMRRESLDMIKLAMDMAK--E----MNAGYTLISAAHAGYLTPPNVIW-GRLAENLSELCEYAENIGMDL 145 (275)
T ss_pred ------CCCHHHHHHHHHHHHHHHHHHH--H----hCCCEEEEcCCCCCCCCCHHHHH-HHHHHHHHHHHHHHHHcCCEE
Confidence 1234444555555566556555 2 2555655422111 00 000001 122346888888998888754
No 82
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=80.10 E-value=1.2 Score=39.75 Aligned_cols=19 Identities=47% Similarity=0.502 Sum_probs=13.7
Q ss_pred CcchhhHHHHHHHHHHHHH
Q 006249 1 MASKEILLLVLCWGFVVLA 19 (654)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (654)
|+||.+|||.+|++++|+.
T Consensus 1 MaSK~~llL~l~LA~lLli 19 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLI 19 (95)
T ss_pred CchhHHHHHHHHHHHHHHH
Confidence 9999988877776654433
No 83
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=79.51 E-value=3.5 Score=33.95 Aligned_cols=41 Identities=27% Similarity=0.499 Sum_probs=29.1
Q ss_pred EEEEccccceEEEEECCEEEEEEEcCcCCceEEEecccccCCCccEEEEEE
Q 006249 501 VLHVQSLGHALHAFINGKLVGSGYGSSSNAKVTVDFPIALAPGKNTFDLLS 551 (654)
Q Consensus 501 ~L~l~~~~d~~~VfVNG~~vGt~~g~~~~~~~~~~~~v~Lk~G~N~L~ILv 551 (654)
.|.|.+.-..+.|||||+++|... ..+. .|++|.++|.|.-
T Consensus 3 ~l~V~s~p~gA~V~vdg~~~G~tp-------~~~~---~l~~G~~~v~v~~ 43 (71)
T PF08308_consen 3 TLRVTSNPSGAEVYVDGKYIGTTP-------LTLK---DLPPGEHTVTVEK 43 (71)
T ss_pred EEEEEEECCCCEEEECCEEeccCc-------ceee---ecCCccEEEEEEE
Confidence 688888888899999999999422 2222 1678876666543
No 84
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=79.43 E-value=28 Score=35.88 Aligned_cols=42 Identities=21% Similarity=0.336 Sum_probs=34.8
Q ss_pred HHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEE
Q 006249 58 WPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHL 113 (654)
Q Consensus 58 W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vil 113 (654)
++++|++++++|++.|+.. . |. ..+++.+.++++++||.+..
T Consensus 17 l~~~l~~~a~~Gf~~VEl~---~---~~--------~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 17 FLARFEKAAQCGFRGVEFM---F---PY--------DYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred HHHHHHHHHHhCCCEEEEc---C---CC--------CCCHHHHHHHHHHcCCcEEE
Confidence 7899999999999999983 1 11 13799999999999999854
No 85
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=79.32 E-value=2.9 Score=43.47 Aligned_cols=52 Identities=15% Similarity=0.369 Sum_probs=39.7
Q ss_pred cccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEEecC
Q 006249 55 PEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (654)
Q Consensus 55 ~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~G 116 (654)
+...++-|+.+|++||++|++ ..|..+.+ ..+..++|+.|++.|++|+-..|
T Consensus 83 q~~~~~yl~~~k~lGf~~IEi---------SdGti~l~-~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEI---------SDGTIDLP-EEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE-----------SSS----HHHHHHHHHHHCCTTSEEEEEES
T ss_pred cChHHHHHHHHHHcCCCEEEe---------cCCceeCC-HHHHHHHHHHHHHCCCEEeeccc
Confidence 667889999999999999998 34555544 34777999999999999999997
No 86
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=79.30 E-value=3.4 Score=47.85 Aligned_cols=54 Identities=26% Similarity=0.358 Sum_probs=39.3
Q ss_pred HHHHHHHHHCCCCEEEE-ccc-------CCCC-----CCCCceeeccccchHHHHHHHHHHcCcEEEEec
Q 006249 59 PDLIQKSKDGGLDVIET-YVF-------WNLH-----EPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (654)
Q Consensus 59 ~~~l~k~Ka~G~N~V~t-yv~-------Wn~h-----Ep~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~ 115 (654)
.+.|.-+|++|+|+|.. +|+ |.+. .+.+ .|.+..+|.+||+.|+++||.|||-.
T Consensus 114 ~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~---~~G~~~e~k~lV~~aH~~Gi~VilD~ 180 (542)
T TIGR02402 114 IEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHN---AYGGPDDLKALVDAAHGLGLGVILDV 180 (542)
T ss_pred HHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccc---ccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 34688899999999997 342 2211 1111 24456799999999999999999984
No 87
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=78.86 E-value=43 Score=39.16 Aligned_cols=159 Identities=14% Similarity=0.119 Sum_probs=78.5
Q ss_pred cccHHHHHHHHHHCCCCEEEEc-ccCCCCCCCCcee--------ecccc----chHHHHHHHHHHcCcEEEEecCccccc
Q 006249 55 PEMWPDLIQKSKDGGLDVIETY-VFWNLHEPVRNQY--------NFEGR----YDLVKFVKLVAEAGLYAHLRIGPYVCA 121 (654)
Q Consensus 55 ~~~W~~~l~k~Ka~G~N~V~ty-v~Wn~hEp~~G~~--------dF~g~----~dl~~fl~la~~~GL~Vilr~GPyi~a 121 (654)
++.=++.|..|+...||.|+.| ..|.||.|-|+.= |+.++ .-+...|+.|++.|+.++.=--=|-+-
T Consensus 117 ~~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa~ 196 (559)
T PF13199_consen 117 AEDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNMIYAAN 196 (559)
T ss_dssp HHHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESSEEE
T ss_pred chhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHhhhccc
Confidence 3467789999999999999999 7799999976433 23333 367899999999999998543222222
Q ss_pred cc--CCCCCCccccc-CCCe------ee--------e---cCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeeccc
Q 006249 122 EW--NFGGFPLWLHF-IPGI------QF--------R---TDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIE 181 (654)
Q Consensus 122 Ew--~~GG~P~WL~~-~p~~------~~--------R---~~d~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QIE 181 (654)
+. ..|=.|.|.+- +++- .+ . ..|+.|.++.-.=+.+.++.+.=++.+.++=|+.--+ .
T Consensus 197 ~~~~~~gv~~eW~ly~d~~~~~~~~~~l~~~w~s~lyl~dP~N~~WQ~yI~~q~~~~~~~~gFDG~hlDq~G~~~~~--~ 274 (559)
T PF13199_consen 197 NNYEEDGVSPEWGLYKDDSHSNQDTYDLPDGWPSDLYLMDPGNPEWQNYIINQMNKAIQNFGFDGWHLDQLGNRGTV--Y 274 (559)
T ss_dssp TT--S--SS-GGBEEESSSBTSB-EEEETT-E--EEEEB-TT-HHHHHHHHHHHHHHHHHHT--EEEEE-S--EEEE--G
T ss_pred cCcccccCCchhhhhhccCCCccceeecCcccccceEEecCCCHHHHHHHHHHHHHHHHccCCceEeeeccCCCCcc--c
Confidence 22 35667888863 3321 11 1 1244555554443444444333233344433433322 1
Q ss_pred ccccccccccCcccHHHHHHHHHHHhhcCCCcceEEcc
Q 006249 182 NEYGNIDSAYGAAGKSYIKWAAGMALSLDTGVPWVMCQ 219 (654)
Q Consensus 182 NEyg~~~~~~g~~~~~y~~~l~~~~~~~g~~vP~~~~~ 219 (654)
+.-|... ..-...|...|.++-... .+.+++++.
T Consensus 275 d~~G~~i---~~l~~~y~~Fi~~~K~~~-~~k~lv~N~ 308 (559)
T PF13199_consen 275 DYDGNKI---YDLSDGYASFINAMKEAL-PDKYLVFNA 308 (559)
T ss_dssp GTT---G---GECHHHHHHHHHHHHHHS-TTSEEEEB-
T ss_pred cCCCCCc---hhhHHHHHHHHHHHHHhC-CCCceeeec
Confidence 2222210 012456776666665554 566677644
No 88
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=78.84 E-value=6.7 Score=49.75 Aligned_cols=111 Identities=14% Similarity=0.249 Sum_probs=66.4
Q ss_pred cEEECCEEeEEEEE---EeeCCCC--CcccHHHHHHHHHHCCCCEEEE-ccc-CC---CCCCCCceee----c----ccc
Q 006249 33 AVVIGGKRRVLISG---SIHYPRS--TPEMWPDLIQKSKDGGLDVIET-YVF-WN---LHEPVRNQYN----F----EGR 94 (654)
Q Consensus 33 ~~~idG~p~~~~sG---~iHy~R~--~~~~W~~~l~k~Ka~G~N~V~t-yv~-Wn---~hEp~~G~~d----F----~g~ 94 (654)
.+.|||+.++.+.+ .-..+++ +-+.|++.|+.+|++|+|+|-. +++ =. ..=-..+++. | .|.
T Consensus 104 ~L~i~~~~~lPl~~i~iqTvlsK~mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~ 183 (1464)
T TIGR01531 104 MLYINADKFLPLDSIALQTVLAKLLGPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDGK 183 (1464)
T ss_pred eeEECCCcccCcCceeeeeehhhhcCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCcH
Confidence 45666633333222 2234443 5577999999999999999986 333 11 0000122222 3 366
Q ss_pred chHHHHHHHHHHc-CcEEEEecCcccccccCCCCC-CcccccCCCeeeecCChhHHH
Q 006249 95 YDLVKFVKLVAEA-GLYAHLRIGPYVCAEWNFGGF-PLWLHFIPGIQFRTDNEPFKA 149 (654)
Q Consensus 95 ~dl~~fl~la~~~-GL~Vilr~GPyi~aEw~~GG~-P~WL~~~p~~~~R~~d~~y~~ 149 (654)
.|+.++++.|++. ||++|+-.= |+.=+. =.||.++|+.-.-..+.+||+
T Consensus 184 ~d~~~lV~~~h~~~Gm~~ilDvV------~NHTa~ds~Wl~eHPEa~Yn~~~sP~L~ 234 (1464)
T TIGR01531 184 NDVQALVEKLHRDWNVLSITDIV------FNHTANNSPWLLEHPEAAYNCITSPHLR 234 (1464)
T ss_pred HHHHHHHHHHHHhcCCEEEEEee------ecccccCCHHHHhChHhhcCCCCCchhh
Confidence 7999999999985 999998741 333222 358887777544444444443
No 89
>PLN02960 alpha-amylase
Probab=78.62 E-value=65 Score=39.56 Aligned_cols=57 Identities=19% Similarity=0.216 Sum_probs=39.6
Q ss_pred HHHHHHHHHCCCCEEEE-ccc-------CCCCCCC--CceeeccccchHHHHHHHHHHcCcEEEEec
Q 006249 59 PDLIQKSKDGGLDVIET-YVF-------WNLHEPV--RNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (654)
Q Consensus 59 ~~~l~k~Ka~G~N~V~t-yv~-------Wn~hEp~--~G~~dF~g~~dl~~fl~la~~~GL~Vilr~ 115 (654)
++.|.-+|++|+|+|+. .|+ |.+.-.- .=.-.|....+|.+||+.|+++||.|||-.
T Consensus 420 e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDv 486 (897)
T PLN02960 420 QKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDI 486 (897)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 35689999999999997 443 3211000 000123456799999999999999999985
No 90
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=78.02 E-value=3.4 Score=47.90 Aligned_cols=60 Identities=17% Similarity=0.133 Sum_probs=42.7
Q ss_pred ccHHHHHHHHHHCCCCEEEE-cccCCCCCCCCceee----------ccccchHHHHHHHHHHcCcEEEEecCc
Q 006249 56 EMWPDLIQKSKDGGLDVIET-YVFWNLHEPVRNQYN----------FEGRYDLVKFVKLVAEAGLYAHLRIGP 117 (654)
Q Consensus 56 ~~W~~~l~k~Ka~G~N~V~t-yv~Wn~hEp~~G~~d----------F~g~~dl~~fl~la~~~GL~Vilr~GP 117 (654)
.-+.+.|.-+|++|+|+|-+ .++=+-.. ..-|+ |....||.+|++.|+++||+|||-.=|
T Consensus 27 ~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~--~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v~ 97 (543)
T TIGR02403 27 RGIIEKLDYLKKLGVDYIWLNPFYVSPQK--DNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMVF 97 (543)
T ss_pred HHHHHhHHHHHHcCCCEEEECCcccCCCC--CCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEECc
Confidence 34677889999999999987 34432110 01222 445679999999999999999987533
No 91
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=77.67 E-value=5.7 Score=34.35 Aligned_cols=51 Identities=18% Similarity=0.225 Sum_probs=35.9
Q ss_pred CceEEEEccccceEEEEECCEEEEEEEcCcCCceEEEecccccCCCccEEEEEEeecC
Q 006249 498 SKTVLHVQSLGHALHAFINGKLVGSGYGSSSNAKVTVDFPIALAPGKNTFDLLSLTVG 555 (654)
Q Consensus 498 ~~~~L~l~~~~d~~~VfVNG~~vGt~~g~~~~~~~~~~~~v~Lk~G~N~L~ILv~n~G 555 (654)
+.+.|++.......+-||||+++|+..... .+.+.. ..+|+++|+| +...|
T Consensus 32 ~~l~l~a~~~~~~~~W~vdg~~~g~~~~~~---~~~~~~---~~~G~h~l~v-vD~~G 82 (89)
T PF06832_consen 32 QPLVLKAAGGRGPVYWFVDGEPLGTTQPGH---QLFWQP---DRPGEHTLTV-VDAQG 82 (89)
T ss_pred ceEEEEEeCCCCcEEEEECCEEcccCCCCC---eEEeCC---CCCeeEEEEE-EcCCC
Confidence 456777766667999999999998766543 344331 2789998887 55556
No 92
>PLN00196 alpha-amylase; Provisional
Probab=77.56 E-value=9 Score=43.16 Aligned_cols=59 Identities=8% Similarity=0.102 Sum_probs=40.6
Q ss_pred HHHHHHHHHCCCCEEEEc-ccCCC--CCCCCce-ee-----ccccchHHHHHHHHHHcCcEEEEecCc
Q 006249 59 PDLIQKSKDGGLDVIETY-VFWNL--HEPVRNQ-YN-----FEGRYDLVKFVKLVAEAGLYAHLRIGP 117 (654)
Q Consensus 59 ~~~l~k~Ka~G~N~V~ty-v~Wn~--hEp~~G~-~d-----F~g~~dl~~fl~la~~~GL~Vilr~GP 117 (654)
.+.|.-+|++|+++|-.. ++=+. |--.+.. |+ |....+|.++++.|++.||+||+-.=+
T Consensus 47 ~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~ 114 (428)
T PLN00196 47 MGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVI 114 (428)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECc
Confidence 467788999999999884 33221 1111211 32 333469999999999999999998533
No 93
>PRK09989 hypothetical protein; Provisional
Probab=77.32 E-value=25 Score=36.27 Aligned_cols=43 Identities=16% Similarity=0.328 Sum_probs=34.6
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEE
Q 006249 57 MWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHL 113 (654)
Q Consensus 57 ~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vil 113 (654)
-.+++|++++++|++.|++..+|. .+...+-++.+++||.|..
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~~~~--------------~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLFPYD--------------YSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECCccc--------------CCHHHHHHHHHHcCCcEEE
Confidence 478999999999999999943332 2466888889999999875
No 94
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=76.86 E-value=4.9 Score=45.96 Aligned_cols=99 Identities=15% Similarity=0.121 Sum_probs=75.7
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCCCCCC---CceeeccccchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccc
Q 006249 57 MWPDLIQKSKDGGLDVIETYVFWNLHEPV---RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLH 133 (654)
Q Consensus 57 ~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~---~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~ 133 (654)
.+.++++.||++|+++-|.-|-|+..=|. .+.-+-.|..--..+|+...++||..++-. -+=.+|.+|.
T Consensus 92 ~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTL--------fHwDlPq~Le 163 (524)
T KOG0626|consen 92 RYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTL--------FHWDLPQALE 163 (524)
T ss_pred hhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEE--------ecCCCCHHHH
Confidence 47899999999999999999999988775 256888888888999999999999976654 1335898887
Q ss_pred c-CCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 006249 134 F-IPGIQFRTDNEPFKAEMQRFTAKIVDMMK 163 (654)
Q Consensus 134 ~-~p~~~~R~~d~~y~~~~~~~~~~l~~~i~ 163 (654)
. +.+-.-+..=..|+++.+--+++..+++|
T Consensus 164 DeYgGwLn~~ivedF~~yA~~CF~~fGDrVK 194 (524)
T KOG0626|consen 164 DEYGGWLNPEIVEDFRDYADLCFQEFGDRVK 194 (524)
T ss_pred HHhccccCHHHHHHHHHHHHHHHHHhcccce
Confidence 5 44432222334577777777777777777
No 95
>PRK12677 xylose isomerase; Provisional
Probab=76.25 E-value=44 Score=37.13 Aligned_cols=90 Identities=12% Similarity=0.127 Sum_probs=55.4
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeecc---ccchHHHHHHHHHHcCcEEE-EecCcccccccCCCCCCcc
Q 006249 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFE---GRYDLVKFVKLVAEAGLYAH-LRIGPYVCAEWNFGGFPLW 131 (654)
Q Consensus 56 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~---g~~dl~~fl~la~~~GL~Vi-lr~GPyi~aEw~~GG~P~W 131 (654)
-.+++.+++++++|+..|+.. .+..--|+.+ -...+.++.+++++.||.|. +-+.-|-+..+..|+
T Consensus 31 ~~~~E~v~~~a~~Gf~gVElh------~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~~~g~---- 100 (384)
T PRK12677 31 LDPVEAVHKLAELGAYGVTFH------DDDLVPFGATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVFKDGA---- 100 (384)
T ss_pred CCHHHHHHHHHHhCCCEEEec------ccccCCCCCChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccccCCc----
Confidence 347899999999999999983 2111112222 11358899999999999976 444322122222222
Q ss_pred cccCCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 006249 132 LHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMK 163 (654)
Q Consensus 132 L~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~ 163 (654)
+-+.|+..++...+.+.+.++.-+
T Consensus 101 --------lts~d~~~R~~Ai~~~~r~IdlA~ 124 (384)
T PRK12677 101 --------FTSNDRDVRRYALRKVLRNIDLAA 124 (384)
T ss_pred --------CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 344567766666666666656555
No 96
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=75.36 E-value=5.3 Score=42.60 Aligned_cols=66 Identities=20% Similarity=0.368 Sum_probs=48.4
Q ss_pred CcccHHHHHHHHHHCCCCE--EEEcccCCCCCCC-Cceeecccc--chHHHHHHHHHHcCcEEEEecCccccc
Q 006249 54 TPEMWPDLIQKSKDGGLDV--IETYVFWNLHEPV-RNQYNFEGR--YDLVKFVKLVAEAGLYAHLRIGPYVCA 121 (654)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~N~--V~tyv~Wn~hEp~-~G~~dF~g~--~dl~~fl~la~~~GL~Vilr~GPyi~a 121 (654)
..+..++.++++|+.||.+ +..-+.|- ... -+.|.|+-. -|..++++..+++|++|++..=|+|+.
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~w~--~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~ 92 (308)
T cd06593 22 DEEEVNEFADGMRERNLPCDVIHLDCFWM--KEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQ 92 (308)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEecccc--cCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 6677889999999999655 44444454 322 235665532 289999999999999999998888754
No 97
>PRK10785 maltodextrin glucosidase; Provisional
Probab=74.12 E-value=6.5 Score=46.13 Aligned_cols=57 Identities=16% Similarity=0.234 Sum_probs=40.8
Q ss_pred HHHHHHHHHCCCCEEEE-cccCC--CCCCCCcee-----eccccchHHHHHHHHHHcCcEEEEec
Q 006249 59 PDLIQKSKDGGLDVIET-YVFWN--LHEPVRNQY-----NFEGRYDLVKFVKLVAEAGLYAHLRI 115 (654)
Q Consensus 59 ~~~l~k~Ka~G~N~V~t-yv~Wn--~hEp~~G~~-----dF~g~~dl~~fl~la~~~GL~Vilr~ 115 (654)
.+.|.-+|++|+|+|-. +||=+ .|---..-| .|.+..||.+|++.|++.||+|||-.
T Consensus 182 ~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~ 246 (598)
T PRK10785 182 SEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDG 246 (598)
T ss_pred HHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 45788899999999997 56532 121111111 24456799999999999999999874
No 98
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=74.03 E-value=6.2 Score=37.68 Aligned_cols=27 Identities=11% Similarity=0.370 Sum_probs=21.5
Q ss_pred CCCeeEEEEeeeccCcc---cceeeccccc
Q 006249 622 LQPLVWYKVIFIFHYIF---YSVHQLKDLN 648 (654)
Q Consensus 622 ~~~ltWYKt~F~~p~~~---~~~~~~~~~~ 648 (654)
.+...||+++|++|... ..+|.+.|+.
T Consensus 66 ~~~~~wYr~~f~lp~~~~~~~~~L~f~gv~ 95 (167)
T PF02837_consen 66 YSGYAWYRRTFTLPADWKGKRVFLRFEGVD 95 (167)
T ss_dssp CCSEEEEEEEEEESGGGTTSEEEEEESEEE
T ss_pred cCceEEEEEEEEeCchhcCceEEEEeccce
Confidence 45789999999999854 4488888765
No 99
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=73.84 E-value=5.9 Score=46.54 Aligned_cols=55 Identities=18% Similarity=0.365 Sum_probs=37.6
Q ss_pred HHHHHHHHCCCCEEEE-ccc---------------CCCCC-----CCCceee----cc--ccchHHHHHHHHHHcCcEEE
Q 006249 60 DLIQKSKDGGLDVIET-YVF---------------WNLHE-----PVRNQYN----FE--GRYDLVKFVKLVAEAGLYAH 112 (654)
Q Consensus 60 ~~l~k~Ka~G~N~V~t-yv~---------------Wn~hE-----p~~G~~d----F~--g~~dl~~fl~la~~~GL~Vi 112 (654)
+.|.-+|++|+|+|+. +|+ |.+.- |. +.|- +- ...+|.+||+.|+++||.||
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~-~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vi 246 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPE-GSYSTNPYDPATRIRELKQMIQALHENGIRVI 246 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcC-hhhhcCCCccchHHHHHHHHHHHHHHCCCEEE
Confidence 4589999999999997 444 22221 00 0110 00 02689999999999999999
Q ss_pred Eec
Q 006249 113 LRI 115 (654)
Q Consensus 113 lr~ 115 (654)
|-.
T Consensus 247 lDv 249 (605)
T TIGR02104 247 MDV 249 (605)
T ss_pred EEE
Confidence 985
No 100
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=73.73 E-value=26 Score=36.22 Aligned_cols=101 Identities=13% Similarity=0.130 Sum_probs=65.2
Q ss_pred EEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCcee-eccccchHHHHHHHHHHcCcEEEEecCcccccccC
Q 006249 46 GSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQY-NFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWN 124 (654)
Q Consensus 46 G~iHy~R~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~-dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~ 124 (654)
|+.+..+-+ -++.|+.+.++|++.|+. ...+|..-.- +++ ..+++++.++++++||.+.+- +||.
T Consensus 3 g~~~~~~~~---~~~~~~~~~~~G~~~vel----~~~~~~~~~~~~~~-~~~~~~l~~~~~~~gl~ls~h-~p~~----- 68 (273)
T smart00518 3 GAHVSAAGG---LYKAFIEAVDIGARSFQL----FLGNPRSWKGVRLS-EETAEKFKEALKENNIDVSVH-APYL----- 68 (273)
T ss_pred eEEEcccCc---HhHHHHHHHHcCCCEEEE----ECCCCCCCCCCCCC-HHHHHHHHHHHHHcCCCEEEE-CCce-----
Confidence 444444444 447899999999999999 4555533110 222 236889999999999987542 3432
Q ss_pred CCCCCcccccCCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeec
Q 006249 125 FGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQ 179 (654)
Q Consensus 125 ~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~Q 179 (654)
+.+.+.|+..+++..+++++.++..+ .+ |.++|.+.
T Consensus 69 -------------~nl~s~d~~~r~~~~~~l~~~i~~A~--~l----Ga~~vv~h 104 (273)
T smart00518 69 -------------INLASPDKEKVEKSIERLIDEIKRCE--EL----GIKALVFH 104 (273)
T ss_pred -------------ecCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEc
Confidence 12345677777777777777777766 33 55666553
No 101
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=73.63 E-value=23 Score=37.91 Aligned_cols=69 Identities=17% Similarity=0.335 Sum_probs=54.0
Q ss_pred CCCCcccHHHHHHHHHHCCC--CEEEEcccCCCCCCCCceeecccc--chHHHHHHHHHHcCcEEEEecCcccccc
Q 006249 51 PRSTPEMWPDLIQKSKDGGL--DVIETYVFWNLHEPVRNQYNFEGR--YDLVKFVKLVAEAGLYAHLRIGPYVCAE 122 (654)
Q Consensus 51 ~R~~~~~W~~~l~k~Ka~G~--N~V~tyv~Wn~hEp~~G~~dF~g~--~dl~~fl~la~~~GL~Vilr~GPyi~aE 122 (654)
...+.+.-.+.++++++.|+ ++|-+-..|- ..-|.|.|+-. -|..++++..++.|+++++..=|+|+.+
T Consensus 25 ~~~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~---~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~ 97 (303)
T cd06592 25 ADINQETVLNYAQEIIDNGFPNGQIEIDDNWE---TCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTD 97 (303)
T ss_pred cCcCHHHHHHHHHHHHHcCCCCCeEEeCCCcc---ccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCC
Confidence 34577888999999999995 4666655563 34566766532 3899999999999999999999999764
No 102
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=73.62 E-value=2.9 Score=33.87 Aligned_cols=47 Identities=30% Similarity=0.400 Sum_probs=29.1
Q ss_pred CcchhhHHHHHHHHHHHHHhcc----CCeeEEEecCcEEECCEEeEEEEEEee
Q 006249 1 MASKEILLLVLCWGFVVLATTS----FGANVTYDHRAVVIGGKRRVLISGSIH 49 (654)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~d~~~~~idG~p~~~~sG~iH 49 (654)
|++|.+++.++++++...+-++ ++..=+||.+.+ |.+|.+.-+-++|
T Consensus 1 MA~Kl~vialLC~aLva~vQ~APQYa~GeeP~YDEdd~--dde~l~phsss~~ 51 (65)
T PF10731_consen 1 MASKLIVIALLCVALVAIVQSAPQYAPGEEPSYDEDDD--DDEPLKPHSSSIT 51 (65)
T ss_pred CcchhhHHHHHHHHHHHHHhcCcccCCCCCCCcCcccC--cccccccCCCCCC
Confidence 9999999988887765544332 556667776543 3444444444333
No 103
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=73.52 E-value=14 Score=41.05 Aligned_cols=53 Identities=17% Similarity=0.287 Sum_probs=43.3
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEEec
Q 006249 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (654)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~ 115 (654)
..+.|+++|+.+|++||+.... |+.- ...+.. ..|...++.|++.|+++++-+
T Consensus 15 t~~dw~~di~~A~~~GIDgFaL----Nig~--~d~~~~---~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 15 TQEDWEADIRLAQAAGIDGFAL----NIGS--SDSWQP---DQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE----eccc--CCcccH---HHHHHHHHHHHhcCCEEEEEe
Confidence 8889999999999999999998 5542 222333 378899999999999999987
No 104
>PRK09505 malS alpha-amylase; Reviewed
Probab=73.38 E-value=6.7 Score=46.76 Aligned_cols=59 Identities=14% Similarity=0.157 Sum_probs=42.7
Q ss_pred HHHHHHHHHHCCCCEEEE-cccCCCCCCC----Cce------------------eeccccchHHHHHHHHHHcCcEEEEe
Q 006249 58 WPDLIQKSKDGGLDVIET-YVFWNLHEPV----RNQ------------------YNFEGRYDLVKFVKLVAEAGLYAHLR 114 (654)
Q Consensus 58 W~~~l~k~Ka~G~N~V~t-yv~Wn~hEp~----~G~------------------~dF~g~~dl~~fl~la~~~GL~Vilr 114 (654)
+.+.|.-+|++|+|+|-+ .++=+.|... .|. -.|....||..|++.|+++||+||+-
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 567788999999999986 4554433211 110 12445679999999999999999998
Q ss_pred cC
Q 006249 115 IG 116 (654)
Q Consensus 115 ~G 116 (654)
.=
T Consensus 312 ~V 313 (683)
T PRK09505 312 VV 313 (683)
T ss_pred EC
Confidence 63
No 105
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=72.82 E-value=7.4 Score=45.26 Aligned_cols=55 Identities=18% Similarity=0.238 Sum_probs=40.9
Q ss_pred HHHHHHHHHHCCCCEEEE-cccCCCCCCCC-ceee----------ccccchHHHHHHHHHHcCcEEEEec
Q 006249 58 WPDLIQKSKDGGLDVIET-YVFWNLHEPVR-NQYN----------FEGRYDLVKFVKLVAEAGLYAHLRI 115 (654)
Q Consensus 58 W~~~l~k~Ka~G~N~V~t-yv~Wn~hEp~~-G~~d----------F~g~~dl~~fl~la~~~GL~Vilr~ 115 (654)
+.+.|.-+|++|+++|-+ .++-+ |.. .-|| |....||.++++.|+++||+|||-.
T Consensus 35 i~~~ldyl~~lGv~~i~l~P~~~~---~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 35 VTQRLDYLQKLGVDAIWLTPFYVS---PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred HHHhhHHHHhCCCCEEEECCCCCC---CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 567889999999999987 45422 211 1222 3456799999999999999999875
No 106
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=71.46 E-value=7.7 Score=40.23 Aligned_cols=53 Identities=8% Similarity=0.264 Sum_probs=43.9
Q ss_pred cccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEEecCc
Q 006249 55 PEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGP 117 (654)
Q Consensus 55 ~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GP 117 (654)
....++-++.+|+.||++|++ ..|..+++ ..+..++|+.+++.||+|+-..|.
T Consensus 70 q~~~~~Yl~~~k~lGf~~IEi---------S~G~~~i~-~~~~~rlI~~~~~~g~~v~~EvG~ 122 (237)
T TIGR03849 70 KGKFDEYLNECDELGFEAVEI---------SDGSMEIS-LEERCNLIERAKDNGFMVLSEVGK 122 (237)
T ss_pred hhhHHHHHHHHHHcCCCEEEE---------cCCccCCC-HHHHHHHHHHHHhCCCeEeccccc
Confidence 366788888999999999998 35666665 347889999999999999998873
No 107
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=71.29 E-value=1.7 Score=44.63 Aligned_cols=53 Identities=13% Similarity=0.152 Sum_probs=43.1
Q ss_pred HHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEEe
Q 006249 59 PDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLR 114 (654)
Q Consensus 59 ~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr 114 (654)
-...+.+.++|.+.|.+.++|..-.+..-.+... ++.++.+.|++.||.||+.
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~---~i~~v~~~~~~~gl~vIlE 131 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGNEDEVIE---EIAAVVEECHKYGLKVILE 131 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHH---HHHHHHHHHHTSEEEEEEE
T ss_pred HHHHHHHHHcCCceeeeeccccccccccHHHHHH---HHHHHHHHHhcCCcEEEEE
Confidence 5678899999999999999996654444333344 8999999999999999999
No 108
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=70.87 E-value=35 Score=36.23 Aligned_cols=71 Identities=17% Similarity=0.239 Sum_probs=49.8
Q ss_pred eeCCCC---CcccHHHHHHHHHHCCCCEEEEcccCCCCCC--------CCceeecccc--chHHHHHHHHHHcCcEEEEe
Q 006249 48 IHYPRS---TPEMWPDLIQKSKDGGLDVIETYVFWNLHEP--------VRNQYNFEGR--YDLVKFVKLVAEAGLYAHLR 114 (654)
Q Consensus 48 iHy~R~---~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp--------~~G~~dF~g~--~dl~~fl~la~~~GL~Vilr 114 (654)
+|..|. +.+.-++.++++++.||.+=-+++-..+|.- .-+.|.|+-. -|..++++..++.|++|++.
T Consensus 14 ~~qsr~~y~s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~ 93 (292)
T cd06595 14 NWWSRYWPYSDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLN 93 (292)
T ss_pred hHhhCCcCCCHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEE
Confidence 444552 5667788999999999876555554333321 2346776543 39999999999999999987
Q ss_pred cCcc
Q 006249 115 IGPY 118 (654)
Q Consensus 115 ~GPy 118 (654)
.=|+
T Consensus 94 v~P~ 97 (292)
T cd06595 94 LHPA 97 (292)
T ss_pred eCCC
Confidence 7443
No 109
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=70.85 E-value=6.1 Score=45.69 Aligned_cols=57 Identities=19% Similarity=0.252 Sum_probs=41.2
Q ss_pred ccHHHHHHHHHHCCCCEEEE-cccCCCCCCC-Cceee----------ccccchHHHHHHHHHHcCcEEEEec
Q 006249 56 EMWPDLIQKSKDGGLDVIET-YVFWNLHEPV-RNQYN----------FEGRYDLVKFVKLVAEAGLYAHLRI 115 (654)
Q Consensus 56 ~~W~~~l~k~Ka~G~N~V~t-yv~Wn~hEp~-~G~~d----------F~g~~dl~~fl~la~~~GL~Vilr~ 115 (654)
.-+.+.|.-+|++|+|+|-. .|+=+ +. ..-|| |.+..|+.++++.|++.||+|||-.
T Consensus 28 ~gi~~~Ldyl~~LGv~~i~L~Pi~~~---~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~ 96 (539)
T TIGR02456 28 PGLTSKLDYLKWLGVDALWLLPFFQS---PLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDL 96 (539)
T ss_pred HHHHHhHHHHHHCCCCEEEECCCcCC---CCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 34677899999999999987 34311 11 11221 4456799999999999999999863
No 110
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=70.73 E-value=13 Score=40.43 Aligned_cols=72 Identities=24% Similarity=0.258 Sum_probs=58.3
Q ss_pred EEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCce-eeccccchHHHHHHHHHHcCcEEEEecCcccccc
Q 006249 44 ISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQ-YNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAE 122 (654)
Q Consensus 44 ~sG~iHy~R~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~-~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aE 122 (654)
++=++.+.|.+.+.=..-|++|...|+..|=| ++|.|.+.. --|. -+..+++.|.++||+||+..-|=|.-|
T Consensus 4 ~GfSifp~~~~~~~~~~Yi~~~~~~Gf~~IFt----sl~~~~~~~~~~~~---~~~ell~~Anklg~~vivDvnPsil~~ 76 (360)
T COG3589 4 LGFSIFPNRSPKEKDIAYIDRMHKYGFKRIFT----SLLIPEEDAELYFH---RFKELLKEANKLGLRVIVDVNPSILKE 76 (360)
T ss_pred eeEEeccCCCcchhHHHHHHHHHHcCccceee----ecccCCchHHHHHH---HHHHHHHHHHhcCcEEEEEcCHHHHhh
Confidence 45567777888888889999999999999988 899998742 1233 577899999999999999998766544
No 111
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=70.11 E-value=35 Score=37.14 Aligned_cols=74 Identities=14% Similarity=0.218 Sum_probs=55.6
Q ss_pred eeCCCC---CcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccc--hH--HHHHHHHHHcCcEEEEecCcccc
Q 006249 48 IHYPRS---TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRY--DL--VKFVKLVAEAGLYAHLRIGPYVC 120 (654)
Q Consensus 48 iHy~R~---~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~--dl--~~fl~la~~~GL~Vilr~GPyi~ 120 (654)
+|..|. +.+..++.++++++.||.+=.+.+-+.++.. .+.|.|+..+ |. .++++..++.|++|++..=|+|+
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~-~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~ 91 (339)
T cd06602 13 FHLCRWGYKNVDEVKEVVENMRAAGIPLDVQWNDIDYMDR-RRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAIS 91 (339)
T ss_pred hHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECcccccC-ccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccc
Confidence 455554 5667889999999999876655554444432 4677776543 77 99999999999999999999998
Q ss_pred cc
Q 006249 121 AE 122 (654)
Q Consensus 121 aE 122 (654)
-+
T Consensus 92 ~~ 93 (339)
T cd06602 92 AN 93 (339)
T ss_pred cC
Confidence 54
No 112
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=69.77 E-value=62 Score=33.77 Aligned_cols=65 Identities=9% Similarity=0.205 Sum_probs=49.4
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCcee--eccc--cchHHHHHHHHHHcCcEEEEecCccc
Q 006249 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQY--NFEG--RYDLVKFVKLVAEAGLYAHLRIGPYV 119 (654)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~--dF~g--~~dl~~fl~la~~~GL~Vilr~GPyi 119 (654)
..+...+.++.+++.||.+=...+-+.+.+. .+.| +|+- --|..++|+..++.|++|++..=|+|
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~-~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 22 DQDKVLEVIDGMRENDIPLDGFVLDDDYTDG-YGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred CHHHHHHHHHHHHHcCCCccEEEECcccccC-CceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 6667888999999999886555555554443 4556 5542 23899999999999999999988877
No 113
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=69.41 E-value=1.8e+02 Score=31.79 Aligned_cols=234 Identities=14% Similarity=0.125 Sum_probs=104.9
Q ss_pred HHHHHHHCCCCEEEE-------cccCCCCCCCCceeeccccch-HHHHHHHHHHcCcEEEEecCcccccccCCCCCCccc
Q 006249 61 LIQKSKDGGLDVIET-------YVFWNLHEPVRNQYNFEGRYD-LVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWL 132 (654)
Q Consensus 61 ~l~k~Ka~G~N~V~t-------yv~Wn~hEp~~G~~dF~g~~d-l~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL 132 (654)
-.+.+|++|+.-|=. +-.|.-.-..-..-+-...+| +..|.+.|+++||++-+=..| ++|.+...+.-.
T Consensus 96 W~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~---~dw~~~~~~~~~ 172 (346)
T PF01120_consen 96 WAKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSP---WDWHHPDYPPDE 172 (346)
T ss_dssp HHHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEES---SSCCCTTTTSSC
T ss_pred HHHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecc---hHhcCcccCCCc
Confidence 367899999986542 233543222212222222344 567999999999988774332 366554433222
Q ss_pred cc-CCCeeeecCChhHHHHHH-HHHHHHHHHHHhcccccccCCceEeecccccccccccccCcccHHHHHHHHHHHhhcC
Q 006249 133 HF-IPGIQFRTDNEPFKAEMQ-RFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSAYGAAGKSYIKWAAGMALSLD 210 (654)
Q Consensus 133 ~~-~p~~~~R~~d~~y~~~~~-~~~~~l~~~i~~~~l~~~~gGpII~~QIENEyg~~~~~~g~~~~~y~~~l~~~~~~~g 210 (654)
.. .+. .....+.+.++++ .+..+|-+.+.+++. .+|=.=..... .....-...+.++.++..
T Consensus 173 ~~~~~~--~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~------d~lWfDg~~~~--------~~~~~~~~~~~~~i~~~q 236 (346)
T PF01120_consen 173 EGDENG--PADGPGNWQRYYNEYWLAQLRELLTRYKP------DILWFDGGWPD--------PDEDWDSAELYNWIRKLQ 236 (346)
T ss_dssp HCHHCC----HCCHHHHHHHHHHHHHHHHHHHHCSTE------SEEEEESTTSC--------CCTHHHHHHHHHHHHHHS
T ss_pred cCCccc--ccccchhhHhHhhhhhHHHHHHHHhCCCc------ceEEecCCCCc--------cccccCHHHHHHHHHHhC
Confidence 11 000 0112344555555 444455555553321 11111111100 012222356667777766
Q ss_pred CCcceEEccCCCCCCccccCCCCccc-CCcCCC-CCCCCceecc-cccccccccCCCCCCCCHHHHHHHHHHHHHcCCe-
Q 006249 211 TGVPWVMCQQSDAPDPIINTCNGFYC-DQFTPN-SNNKPKMWTE-NWSGWFLSFGGAVPYRPVEDLAFAVARFFQRGGT- 286 (654)
Q Consensus 211 ~~vP~~~~~~~~~~~~~~~~~ng~~~-~~~~~~-~~~~P~~~~E-~~~gwf~~wG~~~~~r~~~~~~~~~~~~l~~g~s- 286 (654)
-++.+....+....... .+.+ |...+. ....|.-... .-.+||=. -.....++++++...+.+..++|++
T Consensus 237 p~~ii~~r~~~~~~~~~-----d~~~~E~~~~~~~~~~pwE~~~ti~~~W~y~-~~~~~~ks~~~li~~l~~~vs~ngnl 310 (346)
T PF01120_consen 237 PDVIINNRWGGNEQGDG-----DYNTPERGIPGEIQGRPWETCTTIGPSWGYN-TPDEKYKSADELIDILVDSVSRNGNL 310 (346)
T ss_dssp TTSEEECCCSSCSSCCB-----SCCEECTTBTTTEEESEEEEEEESSSSSS-C-GGGCGS--HHHHHHHHHHHHTBTEEE
T ss_pred CeEEEecccCCCCCccc-----cccchhccCCCCCCCCCccccCcCCCCCccc-CCCCCcCCHHHHHHHHHHHhccCceE
Confidence 65533321111110000 0001 111111 0111211111 12344430 1123456888998888888999888
Q ss_pred eeeeeeeecCCCCCCCCCCCCccccccCCCCCCCCCCCCChhhHHHHHHHHHHHhhhhc
Q 006249 287 FQNYYMYHGGTNFDRTSGGPFISTSYDYDAPLDEYGLIRQPKWGHLKDLHKAIKLCEAA 345 (654)
Q Consensus 287 ~~n~YM~hGGTNfG~~~G~~~~~tSYDy~Apl~E~G~~~~pky~~lr~l~~~i~~~~~~ 345 (654)
++|. +.+.+|.+.++.-..|+++..-|+...++
T Consensus 311 LLNi--------------------------gP~~dG~ip~~~~~~L~e~G~Wl~~ngea 343 (346)
T PF01120_consen 311 LLNI--------------------------GPDPDGTIPEEQVERLREIGDWLKVNGEA 343 (346)
T ss_dssp EEEE-----------------------------TTSS--HHHHHHHHHHHHHHHHHGGG
T ss_pred EEec--------------------------CCCCCCCcCHHHHHHHHHHHHHHHhcccc
Confidence 3454 34567888777888999999999876554
No 114
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=69.27 E-value=33 Score=38.12 Aligned_cols=122 Identities=13% Similarity=0.103 Sum_probs=67.1
Q ss_pred CCCceeeccccchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccccCCCe----eeecC-ChhHHHHHHHHHHHH
Q 006249 84 PVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGI----QFRTD-NEPFKAEMQRFTAKI 158 (654)
Q Consensus 84 p~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~----~~R~~-d~~y~~~~~~~~~~l 158 (654)
+..|.|||+.+..=+.|++.|++.|...++-.. =..|.|+...... ...++ .+...++...|+..+
T Consensus 93 ~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~aFS---------NSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~V 163 (384)
T PF14587_consen 93 PADGSYDWDADAGQRWFLKAAKERGVNIFEAFS---------NSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADV 163 (384)
T ss_dssp -TTS-B-TTSSHHHHHHHHHHHHTT---EEEE----------SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHH
T ss_pred CCCCCcCCCCCHHHHHHHHHHHHcCCCeEEEee---------cCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHH
Confidence 456899999877778899999999999877542 2378888752210 00111 245566677777777
Q ss_pred HHHHHhcccccccCCceEeecccccccccc-------cccC-cccHHHHHHHHHHHhhcCCCcceEEccC
Q 006249 159 VDMMKQEKLYASQGGPIILSQIENEYGNID-------SAYG-AAGKSYIKWAAGMALSLDTGVPWVMCQQ 220 (654)
Q Consensus 159 ~~~i~~~~l~~~~gGpII~~QIENEyg~~~-------~~~g-~~~~~y~~~l~~~~~~~g~~vP~~~~~~ 220 (654)
+++++.+ |=+|=-+--=||..... +.+. +.....++.|....++.|+..-+.+|+.
T Consensus 164 v~~~~~~------GI~f~~IsP~NEP~~~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~Ea 227 (384)
T PF14587_consen 164 VKHYKKW------GINFDYISPFNEPQWNWAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISACEA 227 (384)
T ss_dssp HHHHHCT------T--EEEEE--S-TTS-GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEEEE
T ss_pred HHHHHhc------CCccceeCCcCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEecch
Confidence 7777643 33555666679986421 1111 1345678899999999999876665554
No 115
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=68.15 E-value=20 Score=38.02 Aligned_cols=109 Identities=17% Similarity=0.218 Sum_probs=69.7
Q ss_pred EEEEEEeeCCCCCccc-HH---HHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEEecCc
Q 006249 42 VLISGSIHYPRSTPEM-WP---DLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGP 117 (654)
Q Consensus 42 ~~~sG~iHy~R~~~~~-W~---~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GP 117 (654)
+-+++..|+..-|... .+ ++|++-.++|.+.+-|-.+ ||.+ .+.+|++.|++.|+.+=+.||.
T Consensus 130 f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~aGA~f~iTQ~~----------Fd~~---~~~~f~~~~~~~gi~~PIi~GI 196 (281)
T TIGR00677 130 FCIGVAGYPEGHPEAESVELDLKYLKEKVDAGADFIITQLF----------YDVD---NFLKFVNDCRAIGIDCPIVPGI 196 (281)
T ss_pred eEEEEEECCCCCCCCCCHHHHHHHHHHHHHcCCCEeeccce----------ecHH---HHHHHHHHHHHcCCCCCEEeec
Confidence 4678888876643221 22 3444444699999998433 4444 7889999999998776555565
Q ss_pred ccc---------cccCCCCCCcccccCCCeeeecCChhHHHHHHHHHHHHHHHHHh
Q 006249 118 YVC---------AEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQ 164 (654)
Q Consensus 118 yi~---------aEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~ 164 (654)
..+ .+|..--+|.|+.+.=. ....+++...+.--++..++++.+.+
T Consensus 197 ~pi~s~~~~~~~~~~~Gi~vP~~l~~~l~-~~~~~~~~~~~~gi~~a~~~~~~l~~ 251 (281)
T TIGR00677 197 MPINNYASFLRRAKWSKTKIPQEIMSRLE-PIKDDDEAVRDYGIELIVEMCQKLLA 251 (281)
T ss_pred cccCCHHHHHHHHhcCCCCCCHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 333 67887778999985100 01223345556666777778777773
No 116
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=67.45 E-value=10 Score=37.20 Aligned_cols=54 Identities=22% Similarity=0.280 Sum_probs=29.1
Q ss_pred CceEEEEcc----ccceEEEEECCEEEEEEE-----------------cCcCCceEEEecccccCCCccEEEEEEee
Q 006249 498 SKTVLHVQS----LGHALHAFINGKLVGSGY-----------------GSSSNAKVTVDFPIALAPGKNTFDLLSLT 553 (654)
Q Consensus 498 ~~~~L~l~~----~~d~~~VfVNG~~vGt~~-----------------g~~~~~~~~~~~~v~Lk~G~N~L~ILv~n 553 (654)
+..+|+|.- ..-+.+|.||| .++... +....-.|++|... |++|.|+|+|-+..
T Consensus 78 ~~~tL~i~la~a~~~~~~~V~vNg-~~~~~~~~~~~~d~~~~r~g~~~G~~~~~~~~ipa~~-L~~G~Nti~lt~~~ 152 (167)
T PF14683_consen 78 GTYTLRIALAGASAGGRLQVSVNG-WSGPFPSAPFGNDNAIYRSGIHRGNYRLYEFDIPASL-LKAGENTITLTVPS 152 (167)
T ss_dssp --EEEEEEEEEEETT-EEEEEETT-EE-----------S--GGGT---S---EEEEEE-TTS-S-SEEEEEEEEEE-
T ss_pred CcEEEEEEeccccCCCCEEEEEcC-ccCCccccccCCCCceeeCceecccEEEEEEEEcHHH-EEeccEEEEEEEcc
Confidence 355666653 35688999999 544411 22212246677655 89999999887754
No 117
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=66.38 E-value=19 Score=29.09 Aligned_cols=56 Identities=14% Similarity=0.106 Sum_probs=44.1
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEE
Q 006249 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHL 113 (654)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vil 113 (654)
.|..-.+.++.+.+.|+|...+|++= ++. ++.+.+.. .|.++..+..+++|..|.|
T Consensus 11 ~pG~La~v~~~l~~~~inI~~i~~~~--~~~-~~~~rl~~-~~~~~~~~~L~~~G~~v~~ 66 (66)
T cd04908 11 KPGRLAAVTEILSEAGINIRALSIAD--TSE-FGILRLIV-SDPDKAKEALKEAGFAVKL 66 (66)
T ss_pred CCChHHHHHHHHHHCCCCEEEEEEEe--cCC-CCEEEEEE-CCHHHHHHHHHHCCCEEEC
Confidence 35567788999999999999999732 333 58887765 5778999999999988754
No 118
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=65.32 E-value=9.6 Score=48.46 Aligned_cols=56 Identities=23% Similarity=0.368 Sum_probs=39.7
Q ss_pred HHHHHHHHCCCCEEEE-cccCCCCCCC---Cce-----ee----------cc--ccchHHHHHHHHHHcCcEEEEec
Q 006249 60 DLIQKSKDGGLDVIET-YVFWNLHEPV---RNQ-----YN----------FE--GRYDLVKFVKLVAEAGLYAHLRI 115 (654)
Q Consensus 60 ~~l~k~Ka~G~N~V~t-yv~Wn~hEp~---~G~-----~d----------F~--g~~dl~~fl~la~~~GL~Vilr~ 115 (654)
+.|.-+|++|+|+|+. .|+=+..|.. .|. || |. +..++.++++.|+++||.|||-.
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDv 267 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDV 267 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEE
Confidence 4567899999999997 5653222221 110 22 23 56799999999999999999984
No 119
>PRK09875 putative hydrolase; Provisional
Probab=64.98 E-value=43 Score=35.85 Aligned_cols=88 Identities=13% Similarity=0.036 Sum_probs=57.9
Q ss_pred EEEecCcEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHH
Q 006249 27 VTYDHRAVVIGGKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAE 106 (654)
Q Consensus 27 v~~d~~~~~idG~p~~~~sG~iHy~R~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~ 106 (654)
+++-+..++++..+.. +......-..+.-...|+.+|++|.+||=- ..+ ..-.||...+.+++++
T Consensus 8 ~tl~HEHl~~~~~~~~---~~~~~~l~~~~~~~~el~~~~~~Gg~tiVd--------~T~----~g~GRd~~~l~~is~~ 72 (292)
T PRK09875 8 YTLAHEHLHIDLSGFK---NNVDCRLDQYAFICQEMNDLMTRGVRNVIE--------MTN----RYMGRNAQFMLDVMRE 72 (292)
T ss_pred cceecCCeEecChhhc---CCcccccccHHHHHHHHHHHHHhCCCeEEe--------cCC----CccCcCHHHHHHHHHH
Confidence 5566666776653321 111111123444566888999999988832 222 1224799999999999
Q ss_pred cCcEEEEecCcccccccCCCCCCccccc
Q 006249 107 AGLYAHLRIGPYVCAEWNFGGFPLWLHF 134 (654)
Q Consensus 107 ~GL~Vilr~GPyi~aEw~~GG~P~WL~~ 134 (654)
-|+.||.-.|-|.... .|.|+..
T Consensus 73 tgv~Iv~~TG~y~~~~-----~p~~~~~ 95 (292)
T PRK09875 73 TGINVVACTGYYQDAF-----FPEHVAT 95 (292)
T ss_pred hCCcEEEcCcCCCCcc-----CCHHHhc
Confidence 9999999999885333 6778773
No 120
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=64.87 E-value=87 Score=35.03 Aligned_cols=89 Identities=16% Similarity=0.191 Sum_probs=59.0
Q ss_pred eCCCCCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCC----ceeecccc---chHHHHHHHHHHcCcEEEEecCccccc
Q 006249 49 HYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVR----NQYNFEGR---YDLVKFVKLVAEAGLYAHLRIGPYVCA 121 (654)
Q Consensus 49 Hy~R~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~----G~~dF~g~---~dl~~fl~la~~~GL~Vilr~GPyi~a 121 (654)
+|+.++.+.-.+.+++++++|++.+-+---|....... |.+--+-. .-|..+++.+++.||+.=|+..|.+++
T Consensus 51 ~~~d~~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v~ 130 (394)
T PF02065_consen 51 YYFDITEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMVS 130 (394)
T ss_dssp HTTG--HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEEE
T ss_pred cCcCCCHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEecccccc
Confidence 46677888888999999999999988887787542222 33322111 149999999999999999998887654
Q ss_pred ccC--CCCCCcccccCCC
Q 006249 122 EWN--FGGFPLWLHFIPG 137 (654)
Q Consensus 122 Ew~--~GG~P~WL~~~p~ 137 (654)
.=. +-..|.|+...++
T Consensus 131 ~~S~l~~~hPdw~l~~~~ 148 (394)
T PF02065_consen 131 PDSDLYREHPDWVLRDPG 148 (394)
T ss_dssp SSSCHCCSSBGGBTCCTT
T ss_pred chhHHHHhCccceeecCC
Confidence 311 2247999987554
No 121
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=64.73 E-value=13 Score=42.88 Aligned_cols=68 Identities=18% Similarity=0.184 Sum_probs=47.8
Q ss_pred EEEEEeccCCCcccccCCCceEEEEccccceEEEEECCEEEEEEEcCcCCceEEEecccccCCCccEEEEEEeec
Q 006249 480 WYSLSTNIKADEPLLEDGSKTVLHVQSLGHALHAFINGKLVGSGYGSSSNAKVTVDFPIALAPGKNTFDLLSLTV 554 (654)
Q Consensus 480 WYrT~i~~~~~~~~~~~g~~~~L~l~~~~d~~~VfVNG~~vGt~~g~~~~~~~~~~~~v~Lk~G~N~L~ILv~n~ 554 (654)
-|.+++.+=+-+ .-+.+.|.|.+++-.+.|||||+.|+........-.|.+.. ...|.|.|.|+-.+.
T Consensus 79 tysr~frl~dl~----~~~~~~l~ie~vdtia~v~~n~~~v~~s~n~f~~y~~~vt~---ii~~~n~i~~~f~ss 146 (867)
T KOG2230|consen 79 TYSRKFRLIDLD----DTVGAFLEIESVDTIATVYVNGQKVLHSRNQFLPYHVNVTD---IIAGENDITIKFKSS 146 (867)
T ss_pred cceeeeEEEEcc----ccccceEEEeecceeEEEEEccEEEeeccccceeEEEeEEE---EecCCcceEEEeehh
Confidence 366666542211 22457899999999999999999999988777644444443 234889888876654
No 122
>COG3915 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.64 E-value=32 Score=32.66 Aligned_cols=47 Identities=19% Similarity=0.269 Sum_probs=35.0
Q ss_pred HHHHHHHCCCCEEEEcccCCCCCCCCceeeccccc--hHHHHHHHHHHcCcEEEE
Q 006249 61 LIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRY--DLVKFVKLVAEAGLYAHL 113 (654)
Q Consensus 61 ~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~--dl~~fl~la~~~GL~Vil 113 (654)
.++.+.+.+--||+|-.+|- .|.-.|+|-+ +|-+.+. ++...+.|+.
T Consensus 39 t~qeLeal~~~T~ete~Pw~-----~gn~rf~Gvsls~Ll~~l~-ak~tslt~iA 87 (155)
T COG3915 39 TLQELEALPDETIETETPWT-----QGNTRFKGVSLSALLAWLG-AKQTSLTVIA 87 (155)
T ss_pred cHHHHhcCCcceEEEecCcc-----cCceeecceeHHHHHHHhh-ccCcceEEEE
Confidence 46678889999999999995 5777888853 5656666 5666666664
No 123
>PLN02361 alpha-amylase
Probab=64.56 E-value=15 Score=41.07 Aligned_cols=57 Identities=11% Similarity=0.085 Sum_probs=39.7
Q ss_pred HHHHHHHHHCCCCEEEEcccCCCCCC---CCce-ee----ccccchHHHHHHHHHHcCcEEEEec
Q 006249 59 PDLIQKSKDGGLDVIETYVFWNLHEP---VRNQ-YN----FEGRYDLVKFVKLVAEAGLYAHLRI 115 (654)
Q Consensus 59 ~~~l~k~Ka~G~N~V~tyv~Wn~hEp---~~G~-~d----F~g~~dl~~fl~la~~~GL~Vilr~ 115 (654)
.+.|.-++++|+++|-+.=+.....+ .+.. |+ |....+|.++|+.|+++||+||+-.
T Consensus 32 ~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 32 EGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 44667789999999988533322111 1221 22 3456799999999999999999875
No 124
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=63.88 E-value=11 Score=32.48 Aligned_cols=47 Identities=19% Similarity=0.295 Sum_probs=24.5
Q ss_pred cCCceEeeccccc-cccccc----ccCc-ccHHHHHHH---HHHHhhcCCCcceEE
Q 006249 171 QGGPIILSQIENE-YGNIDS----AYGA-AGKSYIKWA---AGMALSLDTGVPWVM 217 (654)
Q Consensus 171 ~gGpII~~QIENE-yg~~~~----~~g~-~~~~y~~~l---~~~~~~~g~~vP~~~ 217 (654)
+...|.+|+|-|| .++... ..+. ....|.+|| .+.+|+.+...|+..
T Consensus 7 ~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~ 62 (88)
T PF12876_consen 7 YDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTS 62 (88)
T ss_dssp -GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE-
T ss_pred CCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEe
Confidence 4468999999999 553221 1111 134455554 455567788888754
No 125
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=62.41 E-value=12 Score=44.78 Aligned_cols=55 Identities=20% Similarity=0.303 Sum_probs=37.2
Q ss_pred HHHHHHHCCCCEEEE-cccCCCCC---CCCc-----eee----------cc---ccchHHHHHHHHHHcCcEEEEec
Q 006249 61 LIQKSKDGGLDVIET-YVFWNLHE---PVRN-----QYN----------FE---GRYDLVKFVKLVAEAGLYAHLRI 115 (654)
Q Consensus 61 ~l~k~Ka~G~N~V~t-yv~Wn~hE---p~~G-----~~d----------F~---g~~dl~~fl~la~~~GL~Vilr~ 115 (654)
.|.-+|++|+|+|.. +|+=...+ ...| -|| |. ...+|.+||+.|+++||.|||-.
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 377899999999997 55411111 1111 011 11 24689999999999999999985
No 126
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=62.36 E-value=17 Score=44.26 Aligned_cols=61 Identities=20% Similarity=0.184 Sum_probs=45.3
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCc---ee----------eccccchHHHHHHHHHHcCcEEEEecCc
Q 006249 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRN---QY----------NFEGRYDLVKFVKLVAEAGLYAHLRIGP 117 (654)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G---~~----------dF~g~~dl~~fl~la~~~GL~Vilr~GP 117 (654)
+-+.+.+.|.-++++|+++|-.-=++. ..+| -| .|.+..++.+|++.|+++||.||+-.=|
T Consensus 14 tf~~~~~~L~YL~~LGv~~V~lsPi~~---a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVp 87 (825)
T TIGR02401 14 TFDDAAALLPYLKSLGVSHLYLSPILT---AVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVP 87 (825)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCcCcc---CCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 445688999999999999997632222 1121 11 2457889999999999999999998654
No 127
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=61.17 E-value=54 Score=35.57 Aligned_cols=75 Identities=17% Similarity=0.157 Sum_probs=52.9
Q ss_pred cCcEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEccc----CCCCCC------CCceee--------cc
Q 006249 31 HRAVVIGGKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVF----WNLHEP------VRNQYN--------FE 92 (654)
Q Consensus 31 ~~~~~idG~p~~~~sG~iHy~R~~~~~W~~~l~k~Ka~G~N~V~tyv~----Wn~hEp------~~G~~d--------F~ 92 (654)
.|+|+||=-| || .+.+...+.|+.|-..++|+...++- |.+.-+ ..|.+. |=
T Consensus 3 ~RG~mlD~aR--------~f--~~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~Y 72 (329)
T cd06568 3 YRGLMLDVAR--------HF--FTVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYY 72 (329)
T ss_pred ccceeeeccC--------CC--cCHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcC
Confidence 4566666444 32 28888999999999999999998873 543321 122221 10
Q ss_pred ccchHHHHHHHHHHcCcEEEEec
Q 006249 93 GRYDLVKFVKLVAEAGLYAHLRI 115 (654)
Q Consensus 93 g~~dl~~fl~la~~~GL~Vilr~ 115 (654)
-..|+..+++.|++.|+.||..+
T Consensus 73 T~~di~elv~yA~~rgI~vIPEi 95 (329)
T cd06568 73 TQEDYKDIVAYAAERHITVVPEI 95 (329)
T ss_pred CHHHHHHHHHHHHHcCCEEEEec
Confidence 13599999999999999999774
No 128
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=61.10 E-value=58 Score=35.13 Aligned_cols=59 Identities=8% Similarity=0.155 Sum_probs=44.2
Q ss_pred CcccHHHHHHHHHHCCCCEEEEccc--CCCC---CCC------------------------CceeeccccchHHHHHHHH
Q 006249 54 TPEMWPDLIQKSKDGGLDVIETYVF--WNLH---EPV------------------------RNQYNFEGRYDLVKFVKLV 104 (654)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~N~V~tyv~--Wn~h---Ep~------------------------~G~~dF~g~~dl~~fl~la 104 (654)
+.+...+.|+.|-..++|++..++- |.+- .|. .|.|. ..|+..+++.|
T Consensus 15 ~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT---~~di~eiv~yA 91 (326)
T cd06564 15 SMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYT---KEEFKELIAYA 91 (326)
T ss_pred CHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCccc---HHHHHHHHHHH
Confidence 7888999999999999999997543 3321 111 12222 35999999999
Q ss_pred HHcCcEEEEec
Q 006249 105 AEAGLYAHLRI 115 (654)
Q Consensus 105 ~~~GL~Vilr~ 115 (654)
++.|+.||..+
T Consensus 92 ~~rgI~vIPEI 102 (326)
T cd06564 92 KDRGVNIIPEI 102 (326)
T ss_pred HHcCCeEeccC
Confidence 99999999764
No 129
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=60.04 E-value=44 Score=35.70 Aligned_cols=59 Identities=14% Similarity=0.197 Sum_probs=46.8
Q ss_pred CcccHHHHHHHHHHCCCCEEEEccc----CCCCCC----------------CCceeeccccchHHHHHHHHHHcCcEEEE
Q 006249 54 TPEMWPDLIQKSKDGGLDVIETYVF----WNLHEP----------------VRNQYNFEGRYDLVKFVKLVAEAGLYAHL 113 (654)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~N~V~tyv~----Wn~hEp----------------~~G~~dF~g~~dl~~fl~la~~~GL~Vil 113 (654)
+.+...+.|+.|-..++|++..++- |.+--+ ..|.|.- .|+..+++.|++.|+.||.
T Consensus 14 ~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~---~di~elv~yA~~rgI~viP 90 (303)
T cd02742 14 SVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTY---AQLKDIIEYAAARGIEVIP 90 (303)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECH---HHHHHHHHHHHHcCCEEEE
Confidence 7888999999999999999999877 754311 1223433 4999999999999999997
Q ss_pred ec
Q 006249 114 RI 115 (654)
Q Consensus 114 r~ 115 (654)
.+
T Consensus 91 Ei 92 (303)
T cd02742 91 EI 92 (303)
T ss_pred ec
Confidence 74
No 130
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=59.64 E-value=15 Score=39.48 Aligned_cols=71 Identities=15% Similarity=0.205 Sum_probs=51.4
Q ss_pred eeCCCC---CcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCc--eeeccccc--hHHHHHHHHHHcCcEEEEecCccc
Q 006249 48 IHYPRS---TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRN--QYNFEGRY--DLVKFVKLVAEAGLYAHLRIGPYV 119 (654)
Q Consensus 48 iHy~R~---~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G--~~dF~g~~--dl~~fl~la~~~GL~Vilr~GPyi 119 (654)
+|..|. ..+.-++.++++++.||.+=.+.+-|.+.. ..+ .|+|+-.+ |..++|+..++.|++|++..=|+|
T Consensus 13 ~~~sr~~y~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v 90 (319)
T cd06591 13 FWQSKERYKTQEELLDVAKEYRKRGIPLDVIVQDWFYWP-KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTF 90 (319)
T ss_pred HHHhcccCCCHHHHHHHHHHHHHhCCCccEEEEechhhc-CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCc
Confidence 344443 556678899999999887655555555443 234 77776443 999999999999999999876766
No 131
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=59.17 E-value=1.2e+02 Score=32.96 Aligned_cols=44 Identities=23% Similarity=0.216 Sum_probs=27.5
Q ss_pred ecCcEEECCEEeEEEEEEeeCCCCCcccHHHHH-HHHHHCCCCEEEE
Q 006249 30 DHRAVVIGGKRRVLISGSIHYPRSTPEMWPDLI-QKSKDGGLDVIET 75 (654)
Q Consensus 30 d~~~~~idG~p~~~~sG~iHy~R~~~~~W~~~l-~k~Ka~G~N~V~t 75 (654)
|.+.+.|||||+++|=..-.- .....+-+.+ +.+|++|+.-|-.
T Consensus 150 D~rYikVdGKPv~~Iy~p~~~--pd~~~~~~~wr~~a~~~G~~giyi 194 (345)
T PF14307_consen 150 DPRYIKVDGKPVFLIYRPGDI--PDIKEMIERWREEAKEAGLPGIYI 194 (345)
T ss_pred CCCceeECCEEEEEEECcccc--cCHHHHHHHHHHHHHHcCCCceEE
Confidence 779999999999887433111 1222233333 5678899884443
No 132
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=58.59 E-value=97 Score=32.34 Aligned_cols=126 Identities=19% Similarity=0.386 Sum_probs=79.4
Q ss_pred cccHHHHHHHHHHCCCCEEEEcccCCCCCCCC--ceeeccccchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCccc
Q 006249 55 PEMWPDLIQKSKDGGLDVIETYVFWNLHEPVR--NQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWL 132 (654)
Q Consensus 55 ~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~--G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL 132 (654)
.-.|+++|.-+|++|++.|+. +.-|.-+ -+-||+. .....+.+++.+.|+.+ |-+| |
T Consensus 17 ~~sW~erl~~AK~~GFDFvEm----SvDEsDeRLaRLDWs~-~er~~l~~ai~etgv~i-----pSmC-----------l 75 (287)
T COG3623 17 GFSWLERLALAKELGFDFVEM----SVDESDERLARLDWSK-EERLALVNAIQETGVRI-----PSMC-----------L 75 (287)
T ss_pred CCCHHHHHHHHHHcCCCeEEE----eccchHHHHHhcCCCH-HHHHHHHHHHHHhCCCc-----cchh-----------h
Confidence 445999999999999999999 7777754 4678873 34557788999999843 2222 1
Q ss_pred ccCCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccccccccCc----ccHHH---HHHHHHH
Q 006249 133 HFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSAYGA----AGKSY---IKWAAGM 205 (654)
Q Consensus 133 ~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QIENEyg~~~~~~g~----~~~~y---~~~l~~~ 205 (654)
..+....+-+.|+.-.+.....+.+-+..-. +| .|=-+|+- -|.-| |.+ ..+.| |+|..++
T Consensus 76 SaHRRfPfGS~D~~~r~~aleiM~KaI~LA~--dL------GIRtIQLA-GYDVY---YE~~d~eT~~rFi~g~~~a~~l 143 (287)
T COG3623 76 SAHRRFPFGSKDEATRQQALEIMEKAIQLAQ--DL------GIRTIQLA-GYDVY---YEEADEETRQRFIEGLKWAVEL 143 (287)
T ss_pred hhhccCCCCCCCHHHHHHHHHHHHHHHHHHH--Hh------CceeEeec-cceee---eccCCHHHHHHHHHHHHHHHHH
Confidence 1122222567899888877777777555544 33 35556763 23322 221 22334 5677777
Q ss_pred HhhcCCCc
Q 006249 206 ALSLDTGV 213 (654)
Q Consensus 206 ~~~~g~~v 213 (654)
|.++++..
T Consensus 144 A~~aqV~l 151 (287)
T COG3623 144 AARAQVML 151 (287)
T ss_pred HHhhccEE
Confidence 77776543
No 133
>PRK03705 glycogen debranching enzyme; Provisional
Probab=58.21 E-value=16 Score=43.37 Aligned_cols=55 Identities=25% Similarity=0.302 Sum_probs=37.0
Q ss_pred HHHHHHHCCCCEEEE-cccCCCCCCCC---c-----eee----------cccc-----chHHHHHHHHHHcCcEEEEec
Q 006249 61 LIQKSKDGGLDVIET-YVFWNLHEPVR---N-----QYN----------FEGR-----YDLVKFVKLVAEAGLYAHLRI 115 (654)
Q Consensus 61 ~l~k~Ka~G~N~V~t-yv~Wn~hEp~~---G-----~~d----------F~g~-----~dl~~fl~la~~~GL~Vilr~ 115 (654)
.|.-+|++|+|+|+. +|+=...++.. | -|| |... .++.++++.|++.||.|||-.
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 488999999999997 45421111110 1 011 2221 479999999999999999984
No 134
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=58.07 E-value=21 Score=33.65 Aligned_cols=52 Identities=27% Similarity=0.449 Sum_probs=33.8
Q ss_pred chHHHHHHHHHHcCcEEEEecCcccccccC-CCCCCcccccCCCeeeecCChhHHHHHHHHHHHHHHHHHhc
Q 006249 95 YDLVKFVKLVAEAGLYAHLRIGPYVCAEWN-FGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQE 165 (654)
Q Consensus 95 ~dl~~fl~la~~~GL~Vilr~GPyi~aEw~-~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~ 165 (654)
.||..||++|++.|+.|++-+-| +++.|- +-|+| ++.-+.++++|-.+++++
T Consensus 36 ~Dl~l~L~~~k~~g~~~lfVi~P-vNg~wydytG~~------------------~~~r~~~y~kI~~~~~~~ 88 (130)
T PF04914_consen 36 DDLQLLLDVCKELGIDVLFVIQP-VNGKWYDYTGLS------------------KEMRQEYYKKIKYQLKSQ 88 (130)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-----HHHHHHTT--------------------HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCceEEEecC-CcHHHHHHhCCC------------------HHHHHHHHHHHHHHHHHC
Confidence 39999999999999999776644 555553 22322 244577889998888844
No 135
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=57.93 E-value=18 Score=44.44 Aligned_cols=21 Identities=14% Similarity=0.371 Sum_probs=19.0
Q ss_pred chHHHHHHHHHHcCcEEEEec
Q 006249 95 YDLVKFVKLVAEAGLYAHLRI 115 (654)
Q Consensus 95 ~dl~~fl~la~~~GL~Vilr~ 115 (654)
.++.++|+.|+++||.|||-.
T Consensus 404 ~Efk~mV~alH~~Gi~VIlDV 424 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMDV 424 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEEe
Confidence 479999999999999999974
No 136
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=57.56 E-value=21 Score=46.71 Aligned_cols=61 Identities=16% Similarity=0.170 Sum_probs=46.3
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCce---e----------eccccchHHHHHHHHHHcCcEEEEecCc
Q 006249 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQ---Y----------NFEGRYDLVKFVKLVAEAGLYAHLRIGP 117 (654)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~---~----------dF~g~~dl~~fl~la~~~GL~Vilr~GP 117 (654)
+-+.|.+.|.-+|++|+|+|-.-=++ +..+|. | .|.+..|+.+|++.|+++||.|||-.=|
T Consensus 756 tf~~~~~~l~Yl~~LGv~~i~lsPi~---~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~ 829 (1693)
T PRK14507 756 TFADAEAILPYLAALGISHVYASPIL---KARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVP 829 (1693)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECCCc---CCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 56679999999999999999873222 222221 2 2457789999999999999999998644
No 137
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=57.55 E-value=44 Score=39.90 Aligned_cols=110 Identities=15% Similarity=0.132 Sum_probs=68.4
Q ss_pred ccHHHHHHHHHHCCCCEEE---------------EcccCCCCCCCCceee-ccccchHHHHHHHHHHcCcEEEEecCccc
Q 006249 56 EMWPDLIQKSKDGGLDVIE---------------TYVFWNLHEPVRNQYN-FEGRYDLVKFVKLVAEAGLYAHLRIGPYV 119 (654)
Q Consensus 56 ~~W~~~l~k~Ka~G~N~V~---------------tyv~Wn~hEp~~G~~d-F~g~~dl~~fl~la~~~GL~Vilr~GPyi 119 (654)
+.-...|+.+|++|+|||= .|.+|. |=| |+-| |+ -+ ...++.+.|+.|..+..||-
T Consensus 334 ~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~~-~lp--~r~d~f~---~~--aw~l~~r~~v~v~AWmp~~~ 405 (671)
T PRK14582 334 RNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPNR-LLP--MRADLFN---RV--AWQLRTRAGVNVYAWMPVLS 405 (671)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCcc-ccc--cccCCcC---HH--HHHHHHhhCCEEEEecccee
Confidence 4467789999999999995 466773 333 3333 22 11 34558999999999999985
Q ss_pred cc---------ccCCCCCCcccccCCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccc
Q 006249 120 CA---------EWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEY 184 (654)
Q Consensus 120 ~a---------Ew~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QIENEy 184 (654)
.. +++..+-|.-.. |+-..| =.+|..++++|++.|.+-|+.+ .+|=++|...+-
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~r--l~P~~pe~r~~i~~i~~dla~~-------~~~dGilf~Dd~ 468 (671)
T PRK14582 406 FDLDPTLPRVKRLDTGEGKAQIH--PEQYRR--LSPFDDRVRAQVGMLYEDLAGH-------AAFDGILFHDDA 468 (671)
T ss_pred eccCCCcchhhhccccCCccccC--CCCCcC--CCCCCHHHHHHHHHHHHHHHHh-------CCCceEEecccc
Confidence 32 222122221111 111122 2356788999999999988843 366677776664
No 138
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=57.55 E-value=40 Score=35.76 Aligned_cols=115 Identities=19% Similarity=0.238 Sum_probs=69.1
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeecc---ccchHHHHHHHHHHcCcEEEEecCcccccccCCCCCC-
Q 006249 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFE---GRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFP- 129 (654)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~---g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P- 129 (654)
.-+..++-+.-+.++|+.-|-+-.-|...+ ....+||+ ...||.++++-|++.|..|+|+. + |+.||-.
T Consensus 30 ~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~-~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~----~--~~~~~~~~ 102 (273)
T PF10566_consen 30 TTETQKRYIDFAAEMGIEYVLVDAGWYGWE-KDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWY----H--SETGGNVA 102 (273)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEEBTTCCGS---TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEE----E--CCHTTBHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEecccccccc-ccccccccccCCccCHHHHHHHHHHcCCCEEEEE----e--CCcchhhH
Confidence 556678889999999999999988898722 24567776 35799999999999999998874 2 2222211
Q ss_pred -------cccc---c--CCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceE
Q 006249 130 -------LWLH---F--IPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPII 176 (654)
Q Consensus 130 -------~WL~---~--~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII 176 (654)
.+|. + +.++++=.-+. --+.+-+|+.+|++.-+++.|+..=+|++.
T Consensus 103 ~~~~~~~~~f~~~~~~Gv~GvKidF~~~-d~Q~~v~~y~~i~~~AA~~~LmvnfHg~~k 160 (273)
T PF10566_consen 103 NLEKQLDEAFKLYAKWGVKGVKIDFMDR-DDQEMVNWYEDILEDAAEYKLMVNFHGATK 160 (273)
T ss_dssp HHHCCHHHHHHHHHHCTEEEEEEE--SS-TSHHHHHHHHHHHHHHHHTT-EEEETTS--
T ss_pred hHHHHHHHHHHHHHHcCCCEEeeCcCCC-CCHHHHHHHHHHHHHHHHcCcEEEecCCcC
Confidence 1111 0 12222210000 114567889999999999988776666653
No 139
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=57.36 E-value=22 Score=36.14 Aligned_cols=45 Identities=22% Similarity=0.142 Sum_probs=38.0
Q ss_pred HHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEEec
Q 006249 61 LIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (654)
Q Consensus 61 ~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~ 115 (654)
...++|++|++.|-+ +|-|.+ |..+ |+.+=++.|.++||.+|++.
T Consensus 73 S~~mLkd~G~~~vii----GHSERR---f~Et---di~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 73 SAEMLKDIGAKGTLI----NHSERR---MKLA---DIEKKIARLKELGLTSVVCT 117 (205)
T ss_pred CHHHHHHcCCCEEEE----CcccCC---CCcc---HHHHHHHHHHHCCCEEEEEE
Confidence 456899999999998 777766 5555 69999999999999999987
No 140
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=57.28 E-value=23 Score=43.34 Aligned_cols=62 Identities=18% Similarity=0.184 Sum_probs=45.9
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCce---e---e-------ccccchHHHHHHHHHHcCcEEEEecCcc
Q 006249 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQ---Y---N-------FEGRYDLVKFVKLVAEAGLYAHLRIGPY 118 (654)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~---~---d-------F~g~~dl~~fl~la~~~GL~Vilr~GPy 118 (654)
+-+.+.+.|.-++++|+|+|-.-=+. +..+|. | | |.+..++.+|++.|+++||.|||-.=|-
T Consensus 18 tf~~~~~~l~YL~~LGis~IyLsPi~---~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~N 92 (879)
T PRK14511 18 TFDDAAELVPYFADLGVSHLYLSPIL---AARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPN 92 (879)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECcCc---cCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 45668999999999999999873221 222221 1 2 3467899999999999999999986553
No 141
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=56.30 E-value=57 Score=34.89 Aligned_cols=66 Identities=15% Similarity=0.092 Sum_probs=46.4
Q ss_pred CcccHHHHHHHHHHCCCCEEEEccc----CCCCCC-C--CceeeccccchHHHHHHHHHHcCcEEEEecCcccccc
Q 006249 54 TPEMWPDLIQKSKDGGLDVIETYVF----WNLHEP-V--RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAE 122 (654)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~N~V~tyv~----Wn~hEp-~--~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aE 122 (654)
+.+.-.+.|+.|...|+|.+..|+- +.-+.. . +|.|. ..|+..+++.|++.||.||..+--.-+.|
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT---~~ei~ei~~yA~~~gI~vIPeid~pGH~~ 87 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYT---KEEIREIDDYAAELGIEVIPLIQTLGHLE 87 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcC---HHHHHHHHHHHHHcCCEEEecCCCHHHHH
Confidence 4577889999999999999998742 322211 1 23332 34999999999999999997753333444
No 142
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=55.87 E-value=53 Score=35.97 Aligned_cols=59 Identities=19% Similarity=0.236 Sum_probs=45.0
Q ss_pred CcccHHHHHHHHHHCCCCEEEEccc----CCCCC----------------------------CCCceeeccccchHHHHH
Q 006249 54 TPEMWPDLIQKSKDGGLDVIETYVF----WNLHE----------------------------PVRNQYNFEGRYDLVKFV 101 (654)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~N~V~tyv~----Wn~hE----------------------------p~~G~~dF~g~~dl~~fl 101 (654)
+.+...+.|+.|...++|+...++- |.+-- +..|.|- ..|+..++
T Consensus 16 ~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT---~~di~eiv 92 (357)
T cd06563 16 PVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYT---QEEIREIV 92 (357)
T ss_pred CHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceEC---HHHHHHHH
Confidence 6888999999999999999998762 32111 1123343 34999999
Q ss_pred HHHHHcCcEEEEec
Q 006249 102 KLVAEAGLYAHLRI 115 (654)
Q Consensus 102 ~la~~~GL~Vilr~ 115 (654)
+.|++.|+.||..+
T Consensus 93 ~yA~~rgI~VIPEI 106 (357)
T cd06563 93 AYAAERGITVIPEI 106 (357)
T ss_pred HHHHHcCCEEEEec
Confidence 99999999999774
No 143
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=55.14 E-value=57 Score=34.45 Aligned_cols=82 Identities=22% Similarity=0.324 Sum_probs=60.6
Q ss_pred eEEEecCcEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeecc--ccchHHHHHHH
Q 006249 26 NVTYDHRAVVIGGKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFE--GRYDLVKFVKL 103 (654)
Q Consensus 26 ~v~~d~~~~~idG~p~~~~sG~iHy~R~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~--g~~dl~~fl~l 103 (654)
.|.+ ..+.+.+.+++++.|=.=- -.++.-.+.-+++|++|+..++.|.+=+... -+.|. |...+..+-+.
T Consensus 15 ~~~~--~~~~~g~~~~~~iaGPCsi--e~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs----~~s~~G~g~~gl~~l~~~ 86 (266)
T PRK13398 15 IVKV--GDVVIGGEEKIIIAGPCAV--ESEEQMVKVAEKLKELGVHMLRGGAFKPRTS----PYSFQGLGEEGLKILKEV 86 (266)
T ss_pred EEEE--CCEEEcCCCEEEEEeCCcC--CCHHHHHHHHHHHHHcCCCEEEEeeecCCCC----CCccCCcHHHHHHHHHHH
Confidence 3444 3477777788888883211 1567778888999999999999997653222 23566 57889999999
Q ss_pred HHHcCcEEEEec
Q 006249 104 VAEAGLYAHLRI 115 (654)
Q Consensus 104 a~~~GL~Vilr~ 115 (654)
|++.||.++-.|
T Consensus 87 ~~~~Gl~~~te~ 98 (266)
T PRK13398 87 GDKYNLPVVTEV 98 (266)
T ss_pred HHHcCCCEEEee
Confidence 999999998776
No 144
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=55.10 E-value=57 Score=35.54 Aligned_cols=72 Identities=11% Similarity=0.153 Sum_probs=54.9
Q ss_pred eeCCCC---CcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccc--hHHHHHHHHHHcCcEEEEecCcccc
Q 006249 48 IHYPRS---TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRY--DLVKFVKLVAEAGLYAHLRIGPYVC 120 (654)
Q Consensus 48 iHy~R~---~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~--dl~~fl~la~~~GL~Vilr~GPyi~ 120 (654)
+|..|. +.++.++.++++++.+|-+=.+++-|.++. .-+.|.|+..+ |..++++..++.|+++++..=|+|.
T Consensus 13 ~~qsr~~Y~~~~ev~~v~~~~r~~~IP~D~i~lDidy~~-~~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~ 89 (332)
T cd06601 13 FHQGCYGYSNRSDLEEVVEGYRDNNIPLDGLHVDVDFQD-NYRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVIS 89 (332)
T ss_pred hhhCCCCCCCHHHHHHHHHHHHHcCCCCceEEEcCchhc-CCCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCcee
Confidence 565664 567788899999999987655555555553 34667776433 8899999999999999998888887
No 145
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=55.02 E-value=1.5e+02 Score=29.67 Aligned_cols=71 Identities=20% Similarity=0.172 Sum_probs=36.0
Q ss_pred CcchhhHHHHHHHHHHHHHhcc------CCeeEEEe-cCcEEECCEEeEE-------EEEEee---CC--CC-CcccHHH
Q 006249 1 MASKEILLLVLCWGFVVLATTS------FGANVTYD-HRAVVIGGKRRVL-------ISGSIH---YP--RS-TPEMWPD 60 (654)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~d-~~~~~idG~p~~~-------~sG~iH---y~--R~-~~~~W~~ 60 (654)
|..|.+++++++ ++..++.++ +-..|++. +..+.++|..+-. +.|.+| ++ |. +.++=..
T Consensus 1 m~~~~~~~~~~~-~~~~~~~a~~~~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P 79 (184)
T TIGR01626 1 MKKQILAAVCGV-IFPSSAWAHNLQVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAELAGKVRVVHHIAGRTSAKEXNAS 79 (184)
T ss_pred CchhHHHHHHHH-HhHHHHhhhhhhcCCcCCceEecCCceEEEcCCcccceeccHHHcCCCEEEEEEEecCCChhhccch
Confidence 666666644444 444434332 33345554 4566666532100 112221 22 44 4444456
Q ss_pred HHHHHHHCCCCE
Q 006249 61 LIQKSKDGGLDV 72 (654)
Q Consensus 61 ~l~k~Ka~G~N~ 72 (654)
.|..||+.|+..
T Consensus 80 ~l~~l~~~~~~~ 91 (184)
T TIGR01626 80 LIDAIKAAKFPP 91 (184)
T ss_pred HHHHHHHcCCCc
Confidence 788899999877
No 146
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=55.01 E-value=21 Score=44.98 Aligned_cols=21 Identities=10% Similarity=0.283 Sum_probs=19.5
Q ss_pred chHHHHHHHHHHcCcEEEEec
Q 006249 95 YDLVKFVKLVAEAGLYAHLRI 115 (654)
Q Consensus 95 ~dl~~fl~la~~~GL~Vilr~ 115 (654)
.+|.++|+.|+++||.|||-.
T Consensus 555 ~EfK~LV~alH~~GI~VILDV 575 (1111)
T TIGR02102 555 AEFKNLINEIHKRGMGVILDV 575 (1111)
T ss_pred HHHHHHHHHHHHCCCEEEEec
Confidence 589999999999999999985
No 147
>PF12733 Cadherin-like: Cadherin-like beta sandwich domain
Probab=54.81 E-value=32 Score=29.33 Aligned_cols=47 Identities=21% Similarity=0.266 Sum_probs=32.8
Q ss_pred ceEEEEccccceEEEEECCEEEEEEEcCcCCceEEEecccccCCCccE-EEEEEeec
Q 006249 499 KTVLHVQSLGHALHAFINGKLVGSGYGSSSNAKVTVDFPIALAPGKNT-FDLLSLTV 554 (654)
Q Consensus 499 ~~~L~l~~~~d~~~VfVNG~~vGt~~g~~~~~~~~~~~~v~Lk~G~N~-L~ILv~n~ 554 (654)
.+.|........+.+.|||..+... . ... .+.|..|.|. |.|.|.+-
T Consensus 26 ~v~v~a~~~~~~a~v~vng~~~~~~--~---~~~----~i~L~~G~n~~i~i~Vta~ 73 (88)
T PF12733_consen 26 SVTVTATPEDSGATVTVNGVPVNSG--G---YSA----TIPLNEGENTVITITVTAE 73 (88)
T ss_pred EEEEEEEECCCCEEEEEcCEEccCC--C---cce----eeEccCCCceEEEEEEEcC
Confidence 3566666678889999999886542 1 112 2447889998 99998644
No 148
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=54.79 E-value=42 Score=39.63 Aligned_cols=109 Identities=16% Similarity=0.163 Sum_probs=76.3
Q ss_pred EEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEEecCc-
Q 006249 39 KRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGP- 117 (654)
Q Consensus 39 ~p~~~~sG~iHy~R~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GP- 117 (654)
++-+.+++..|+.+.+.+.=-++|.+-.++|.+.+-|-.+++ -+ .+.+|++.|++.++.+|.-+-|
T Consensus 461 ~~~f~ig~A~~P~~~~~~~d~~~L~~Ki~aGAdf~iTQ~~fd----------~~---~~~~~~~~~~~~~vpIi~GImPi 527 (612)
T PRK08645 461 KTNFSIGGAFNPNVRNLDKEVKRLEKKIEAGADYFITQPVYD----------EE---LIEELLEATKHLGVPIFIGIMPL 527 (612)
T ss_pred CCceeeeEEeCCCCCChHHHHHHHHHHHHcCCCEEEecccCC----------HH---HHHHHHHHHhcCCCCEEEEeeec
Confidence 455788999987766555555667777789999999965554 33 7889999999888888888777
Q ss_pred -------ccccccCCCCCCcccccC-CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 006249 118 -------YVCAEWNFGGFPLWLHFI-PGIQFRTDNEPFKAEMQRFTAKIVDMMK 163 (654)
Q Consensus 118 -------yi~aEw~~GG~P~WL~~~-p~~~~R~~d~~y~~~~~~~~~~l~~~i~ 163 (654)
|+..+|..--+|.|+.+. .. .. +....+++--++..++++.++
T Consensus 528 ~s~k~~~~~~~~~~Gv~vP~~l~~~l~~--~~-d~~~~~~~gv~~a~e~i~~l~ 578 (612)
T PRK08645 528 VSYRNAEFLHNEVPGITLPEEIRERMRA--VE-DKEEAREEGVAIARELIDAAR 578 (612)
T ss_pred CCHHHHHHHHhCCCCCCCCHHHHHHHHh--cC-CchHHHHHHHHHHHHHHHHHH
Confidence 333346566679998751 11 11 224667777777777777776
No 149
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=53.86 E-value=34 Score=37.37 Aligned_cols=81 Identities=25% Similarity=0.367 Sum_probs=60.0
Q ss_pred eEEEecCcEEECCEEeEEEEEEeeCCCC-CcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccc--cchHHHHHH
Q 006249 26 NVTYDHRAVVIGGKRRVLISGSIHYPRS-TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEG--RYDLVKFVK 102 (654)
Q Consensus 26 ~v~~d~~~~~idG~p~~~~sG~iHy~R~-~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g--~~dl~~fl~ 102 (654)
.|.+ ..+.+.|.++.++.| +--+ .++.-.+.-+.+|++|.++++.|+|= |+---|.|.| ..-|.-+.+
T Consensus 81 ~v~~--~~~~ig~~~~~~IAG---PCsiEs~e~~~~~A~~lk~~ga~~~r~~~fK----pRTsp~sf~G~g~~gL~~L~~ 151 (335)
T PRK08673 81 VVKV--GDVEIGGGKPVVIAG---PCSVESEEQILEIARAVKEAGAQILRGGAFK----PRTSPYSFQGLGEEGLKLLAE 151 (335)
T ss_pred EEEE--CCEEECCCceEEEEe---cCccCCHHHHHHHHHHHHHhchhhccCcEec----CCCCCcccccccHHHHHHHHH
Confidence 3444 347777888888888 2222 56666777888899999999999884 4433467775 567888888
Q ss_pred HHHHcCcEEEEec
Q 006249 103 LVAEAGLYAHLRI 115 (654)
Q Consensus 103 la~~~GL~Vilr~ 115 (654)
.|++.||.++-.+
T Consensus 152 ~~~~~Gl~v~tev 164 (335)
T PRK08673 152 AREETGLPIVTEV 164 (335)
T ss_pred HHHHcCCcEEEee
Confidence 8999999998876
No 150
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=52.97 E-value=3.1e+02 Score=30.45 Aligned_cols=86 Identities=13% Similarity=0.225 Sum_probs=51.4
Q ss_pred HHHcCcEEEEecCcccccccCCCCCCcccccCCC------eeeec-CChhHHHHHHHHHHHHHHHHHhcccccccCCceE
Q 006249 104 VAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPG------IQFRT-DNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPII 176 (654)
Q Consensus 104 a~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~------~~~R~-~d~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII 176 (654)
+-..|+.|+.-| |+ .|+|+.+.-. -++|. ..++|-++..+|+. .++ .+|=|+-
T Consensus 111 ~in~g~ivfASP-------Ws---pPa~Mktt~~~ngg~~g~Lk~e~Ya~yA~~l~~fv~----~m~------~nGvnly 170 (433)
T COG5520 111 AINPGMIVFASP-------WS---PPASMKTTNNRNGGNAGRLKYEKYADYADYLNDFVL----EMK------NNGVNLY 170 (433)
T ss_pred hcCCCcEEEecC-------CC---CchhhhhccCcCCccccccchhHhHHHHHHHHHHHH----HHH------hCCCcee
Confidence 667899998876 53 8999985221 13442 23444444444433 334 4567999
Q ss_pred eecccccccccccccCc---ccHHHHHHHHHHHhhcC
Q 006249 177 LSQIENEYGNIDSAYGA---AGKSYIKWAAGMALSLD 210 (654)
Q Consensus 177 ~~QIENEyg~~~~~~g~---~~~~y~~~l~~~~~~~g 210 (654)
+..+.||..... .|.. ...+.++.+++-+....
T Consensus 171 alSVQNEPd~~p-~~d~~~wtpQe~~rF~~qyl~si~ 206 (433)
T COG5520 171 ALSVQNEPDYAP-TYDWCWWTPQEELRFMRQYLASIN 206 (433)
T ss_pred EEeeccCCcccC-CCCcccccHHHHHHHHHHhhhhhc
Confidence 999999976421 1211 34566667777766654
No 151
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=52.52 E-value=63 Score=33.33 Aligned_cols=96 Identities=10% Similarity=0.023 Sum_probs=55.9
Q ss_pred Cceeecc-ccchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccccCCCeeeecCChhHHHHHHHHHHHHHHHHHh
Q 006249 86 RNQYNFE-GRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQ 164 (654)
Q Consensus 86 ~G~~dF~-g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~ 164 (654)
.|...+. +..++..+++.|++.|++|++..|= |..+.+- .+. .++. .-++|.+.|++.+++
T Consensus 36 ~G~l~~~~~~~~~~~~~~~~~~~~~kvl~sigg-----~~~~~~~-~~~---------~~~~---~r~~fi~~lv~~~~~ 97 (253)
T cd06545 36 NGTLNANPVRSELNSVVNAAHAHNVKILISLAG-----GSPPEFT-AAL---------NDPA---KRKALVDKIINYVVS 97 (253)
T ss_pred CCeEEecCcHHHHHHHHHHHHhCCCEEEEEEcC-----CCCCcch-hhh---------cCHH---HHHHHHHHHHHHHHH
Confidence 4666664 3457889999999999999999861 2111110 011 2333 245688889999986
Q ss_pred cccccccCCceEeecccccccccccccCcccHHHHHHHHHHHhhcC
Q 006249 165 EKLYASQGGPIILSQIENEYGNIDSAYGAAGKSYIKWAAGMALSLD 210 (654)
Q Consensus 165 ~~l~~~~gGpII~~QIENEyg~~~~~~g~~~~~y~~~l~~~~~~~g 210 (654)
+++ =++.|+=|+.... .++-..+++.|++...+.|
T Consensus 98 ~~~--------DGIdiDwE~~~~~---~~~~~~fv~~Lr~~l~~~~ 132 (253)
T cd06545 98 YNL--------DGIDVDLEGPDVT---FGDYLVFIRALYAALKKEG 132 (253)
T ss_pred hCC--------CceeEEeeccCcc---HhHHHHHHHHHHHHHhhcC
Confidence 654 2456666775321 1112234555665555444
No 152
>PLN02877 alpha-amylase/limit dextrinase
Probab=52.00 E-value=27 Score=43.23 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=19.0
Q ss_pred chHHHHHHHHHHcCcEEEEec
Q 006249 95 YDLVKFVKLVAEAGLYAHLRI 115 (654)
Q Consensus 95 ~dl~~fl~la~~~GL~Vilr~ 115 (654)
+++.++|+.|+++||.||+-.
T Consensus 466 ~efk~mV~~lH~~GI~VImDV 486 (970)
T PLN02877 466 IEFRKMVQALNRIGLRVVLDV 486 (970)
T ss_pred HHHHHHHHHHHHCCCEEEEEE
Confidence 369999999999999999985
No 153
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=51.75 E-value=92 Score=28.52 Aligned_cols=70 Identities=14% Similarity=0.220 Sum_probs=42.5
Q ss_pred eEEEEEEeccCCCcccccCCCceEEEEccccceEEEEECCEEEEEEEcCcC-----CceEEEecccccCC-CccEEEEEE
Q 006249 478 YLWYSLSTNIKADEPLLEDGSKTVLHVQSLGHALHAFINGKLVGSGYGSSS-----NAKVTVDFPIALAP-GKNTFDLLS 551 (654)
Q Consensus 478 yvWYrT~i~~~~~~~~~~~g~~~~L~l~~~~d~~~VfVNG~~vGt~~g~~~-----~~~~~~~~~v~Lk~-G~N~L~ILv 551 (654)
.+-++..|..+.+. .-++.+. .+|.+.+||||+.|....+... .........+.|.+ +...|.|..
T Consensus 47 ~~~~~G~~~~~~~G-------~y~f~~~-~~d~~~l~idg~~vid~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y 118 (145)
T PF07691_consen 47 SVRWTGYFKPPETG-------TYTFSLT-SDDGARLWIDGKLVIDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEY 118 (145)
T ss_dssp EEEEEEEEEESSSE-------EEEEEEE-ESSEEEEEETTEEEEECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEE
T ss_pred EEEEEEEEecccCc-------eEEEEEE-ecccEEEEECCEEEEcCCccccccccccccceEEEEEEeeCCeeEEEEEEE
Confidence 35667778877654 2355555 6889999999999988776432 00111222244555 457777776
Q ss_pred eecC
Q 006249 552 LTVG 555 (654)
Q Consensus 552 ~n~G 555 (654)
.+.+
T Consensus 119 ~~~~ 122 (145)
T PF07691_consen 119 FNRG 122 (145)
T ss_dssp EECS
T ss_pred EECC
Confidence 6655
No 154
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=51.35 E-value=35 Score=37.35 Aligned_cols=115 Identities=17% Similarity=0.312 Sum_probs=68.0
Q ss_pred EEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccccCCCeeeecCChhHHHHH
Q 006249 72 VIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEM 151 (654)
Q Consensus 72 ~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~ 151 (654)
-|.+.|.|+++--+. -=...|+.|+++|++|+--+ .-||+ +-+.|+.. + +. +++ +..
T Consensus 32 yvD~fvywsh~~~~i---------Pp~~~idaAHknGV~Vlgti----~~e~~--~~~~~~~~---l-L~-~~~---~~~ 88 (339)
T cd06547 32 YVDTFVYFSHSAVTI---------PPADWINAAHRNGVPVLGTF----IFEWT--GQVEWLED---F-LK-KDE---DGS 88 (339)
T ss_pred hhheeecccCccccC---------CCcHHHHHHHhcCCeEEEEE----EecCC--CchHHHHH---H-hc-cCc---ccc
Confidence 478889999753220 00267899999999997532 34665 34456653 1 12 111 123
Q ss_pred HHHHHHHHHHHHhcccccccCCceEeecccccccccccccCcccHHHHHHHHHHHhhc--CCCcceEE
Q 006249 152 QRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSAYGAAGKSYIKWAAGMALSL--DTGVPWVM 217 (654)
Q Consensus 152 ~~~~~~l~~~i~~~~l~~~~gGpII~~QIENEyg~~~~~~g~~~~~y~~~l~~~~~~~--g~~vP~~~ 217 (654)
.++.++|+++.+.+++ + | +.+-+||..+... ..+.-.++++.|++.+++. +..|-|+.
T Consensus 89 ~~~a~kLv~lak~yGf---D-G--w~iN~E~~~~~~~--~~~~l~~F~~~L~~~~~~~~~~~~v~WYD 148 (339)
T cd06547 89 FPVADKLVEVAKYYGF---D-G--WLINIETELGDAE--KAKRLIAFLRYLKAKLHENVPGSLVIWYD 148 (339)
T ss_pred hHHHHHHHHHHHHhCC---C-c--eEeeeeccCCcHH--HHHHHHHHHHHHHHHHhhcCCCcEEEEEe
Confidence 5678889999986655 2 3 6777788763100 1123445777777777764 34455664
No 155
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=51.32 E-value=28 Score=37.49 Aligned_cols=67 Identities=10% Similarity=0.111 Sum_probs=48.2
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCCCC--C---CCceeecccc--chHHHHHHHHHHcCcEEEEecCcccc
Q 006249 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHE--P---VRNQYNFEGR--YDLVKFVKLVAEAGLYAHLRIGPYVC 120 (654)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hE--p---~~G~~dF~g~--~dl~~fl~la~~~GL~Vilr~GPyi~ 120 (654)
..+...+.++++++.||.+=.+.+-+.++. . .-|.|+|+-. -|..++|+..++.|++|++..=|+|+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~ 95 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVL 95 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCccc
Confidence 456678899999999986555544433333 1 2356666533 38999999999999999998877764
No 156
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=51.08 E-value=40 Score=27.91 Aligned_cols=30 Identities=10% Similarity=0.300 Sum_probs=23.8
Q ss_pred ccceEEEEECCEEEEEEEcCcC--CceEEEec
Q 006249 507 LGHALHAFINGKLVGSGYGSSS--NAKVTVDF 536 (654)
Q Consensus 507 ~~d~~~VfVNG~~vGt~~g~~~--~~~~~~~~ 536 (654)
..|.+.||++++++|+.+.... ..+|.+..
T Consensus 26 ~~dsaEV~~g~EfiGvi~~DedeGe~Sy~f~M 57 (63)
T PF11324_consen 26 KDDSAEVYIGDEFIGVIYRDEDEGEVSYNFQM 57 (63)
T ss_pred CCCceEEEeCCEEEEEEEeecCCCcEEEEEEE
Confidence 4899999999999999997643 35676654
No 157
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=50.88 E-value=25 Score=38.13 Aligned_cols=74 Identities=11% Similarity=0.060 Sum_probs=53.9
Q ss_pred eeCCCC---CcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccc--hHHHHHHHHHHcCcEEEEecCcccccc
Q 006249 48 IHYPRS---TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRY--DLVKFVKLVAEAGLYAHLRIGPYVCAE 122 (654)
Q Consensus 48 iHy~R~---~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~--dl~~fl~la~~~GL~Vilr~GPyi~aE 122 (654)
+|..|. ..++-++.++++++.||.+=.+.+-+.+ ....+.|+|+-.+ |..+|++..++.|++|++..=|+|+.+
T Consensus 13 ~~~sr~~y~~~~ev~~~~~~~~~~~iP~d~i~lD~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~ 91 (339)
T cd06603 13 YHQCRWNYKDQEDVKEVDAGFDEHDIPYDVIWLDIEH-TDGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRD 91 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCCceEEEEChHH-hCCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecC
Confidence 345554 5566788899999999876555544332 2345667776432 899999999999999999998998754
No 158
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=50.12 E-value=29 Score=36.36 Aligned_cols=50 Identities=24% Similarity=0.166 Sum_probs=35.6
Q ss_pred HHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEEecC
Q 006249 61 LIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (654)
Q Consensus 61 ~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~G 116 (654)
...++|++|++.|-+ +|-|.+ -.|.=+ +..+.+=++.|.++||.+|++.|
T Consensus 78 S~~mLkd~G~~~vii----GHSERR-~~f~Et-d~~v~~K~~~a~~~gl~pIvCiG 127 (250)
T PRK00042 78 SAEMLKDLGVKYVII----GHSERR-QYFGET-DELVNKKVKAALKAGLTPILCVG 127 (250)
T ss_pred CHHHHHHCCCCEEEe----Cccccc-CccCcC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 456899999999998 655544 334322 33444445559999999999987
No 159
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=49.57 E-value=52 Score=26.50 Aligned_cols=44 Identities=27% Similarity=0.386 Sum_probs=34.2
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEE
Q 006249 57 MWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHL 113 (654)
Q Consensus 57 ~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vil 113 (654)
..++.++.+|+.|++.|.+ .-|. ++. ...++.+++++.||.||.
T Consensus 16 ~~~~~~~~a~~~g~~~v~i----TDh~------~~~---~~~~~~~~~~~~gi~~i~ 59 (67)
T smart00481 16 SPEELVKRAKELGLKAIAI----TDHG------NLF---GAVEFYKAAKKAGIKPII 59 (67)
T ss_pred CHHHHHHHHHHcCCCEEEE----eeCC------ccc---CHHHHHHHHHHcCCeEEE
Confidence 4678999999999999988 4443 233 356888999999998864
No 160
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=48.98 E-value=29 Score=37.41 Aligned_cols=73 Identities=7% Similarity=0.110 Sum_probs=52.5
Q ss_pred eeCCCC---CcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeecccc--chHHHHHHHHHHcCcEEEEecCccccc
Q 006249 48 IHYPRS---TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGR--YDLVKFVKLVAEAGLYAHLRIGPYVCA 121 (654)
Q Consensus 48 iHy~R~---~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~--~dl~~fl~la~~~GL~Vilr~GPyi~a 121 (654)
+|..|. ..+..++.++++++.+|.+=.+.+-+.+.. .-+.|+|+.. -|..+|++..++.|++|++..=|+|..
T Consensus 13 ~~~sr~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~ 90 (317)
T cd06600 13 YHISRYSYYPQDKVVEVVDIMQKEGFPYDVVFLDIHYMD-SYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRV 90 (317)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEChhhhC-CCCceeechhcCCCHHHHHHHHHHCCCEEEEEeeccccC
Confidence 445554 566678999999999986655544432222 3456777543 389999999999999999988888853
No 161
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=48.47 E-value=39 Score=36.34 Aligned_cols=66 Identities=18% Similarity=0.183 Sum_probs=47.2
Q ss_pred cccHHHHHHHHHHCCCCEEEEcccCCCCCC---CCceeecccc--chHHHHHHHHHHcCcEEEEecCcccc
Q 006249 55 PEMWPDLIQKSKDGGLDVIETYVFWNLHEP---VRNQYNFEGR--YDLVKFVKLVAEAGLYAHLRIGPYVC 120 (654)
Q Consensus 55 ~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp---~~G~~dF~g~--~dl~~fl~la~~~GL~Vilr~GPyi~ 120 (654)
.+.-.+.++++++.||.+=.+.+-+.+..- ....|+|.-. -|..++|+..++.|++|++..=|+|+
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~ 98 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLL 98 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCccc
Confidence 345678899999999976655544332221 1234666532 38999999999999999998888774
No 162
>PLN02826 dihydroorotate dehydrogenase
Probab=48.13 E-value=2.9e+02 Score=31.13 Aligned_cols=155 Identities=18% Similarity=0.262 Sum_probs=80.4
Q ss_pred EEEEEeeCCCCCcccHHHHHHHHHHCC--CCEEEEcccCCCCCC-CCceeeccccchHHHHHHHHHHc-C-cEEEEecCc
Q 006249 43 LISGSIHYPRSTPEMWPDLIQKSKDGG--LDVIETYVFWNLHEP-VRNQYNFEGRYDLVKFVKLVAEA-G-LYAHLRIGP 117 (654)
Q Consensus 43 ~~sG~iHy~R~~~~~W~~~l~k~Ka~G--~N~V~tyv~Wn~hEp-~~G~~dF~g~~dl~~fl~la~~~-G-L~Vilr~GP 117 (654)
+++.++.-...+.+.|+|-.+.++.++ .+.+++ |+--| .||.=+......+.++++.+++. . +.
T Consensus 188 ~lgvnIg~nk~~~~~~~Dy~~~~~~~~~~aDylel----NiScPNtpglr~lq~~~~l~~ll~~V~~~~~~~~------- 256 (409)
T PLN02826 188 ILGVNLGKNKTSEDAAADYVQGVRALSQYADYLVI----NVSSPNTPGLRKLQGRKQLKDLLKKVLAARDEMQ------- 256 (409)
T ss_pred eEEEEeccCCCCcccHHHHHHHHHHHhhhCCEEEE----ECCCCCCCCcccccChHHHHHHHHHHHHHHHHhh-------
Confidence 577778766655556777777777776 788888 77666 35554444445677777766532 0 00
Q ss_pred ccccccC-CCCCCcccccCCCeeeecCChhHHHHHHHHHHHHHHHHHhcc---cccccC---Cc--eEeecccccccccc
Q 006249 118 YVCAEWN-FGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEK---LYASQG---GP--IILSQIENEYGNID 188 (654)
Q Consensus 118 yi~aEw~-~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~---l~~~~g---Gp--II~~QIENEyg~~~ 188 (654)
+. ....|.+++--|++ +++. +..|++.+.+.+ +.+.|- -+ +.-....+|+|.+.
T Consensus 257 -----~~~~~~~Pv~vKlaPdl----~~~d--------i~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlS 319 (409)
T PLN02826 257 -----WGEEGPPPLLVKIAPDL----SKED--------LEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLS 319 (409)
T ss_pred -----hccccCCceEEecCCCC----CHHH--------HHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcC
Confidence 00 01234444433332 1111 223333333222 211110 00 00011235777653
Q ss_pred cccCccc-HHHHHHHHHHHhhcCCCcceEEccCCCCCCccc
Q 006249 189 SAYGAAG-KSYIKWAAGMALSLDTGVPWVMCQQSDAPDPII 228 (654)
Q Consensus 189 ~~~g~~~-~~y~~~l~~~~~~~g~~vP~~~~~~~~~~~~~~ 228 (654)
|..- ..=+++++++++..+-.+|++.|.|-...++++
T Consensus 320 ---G~pl~~~sl~~v~~l~~~~~~~ipIIgvGGI~sg~Da~ 357 (409)
T PLN02826 320 ---GKPLFDLSTEVLREMYRLTRGKIPLVGCGGVSSGEDAY 357 (409)
T ss_pred ---CccccHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHH
Confidence 3221 123778888888877779999988864443333
No 163
>PF03170 BcsB: Bacterial cellulose synthase subunit; InterPro: IPR018513 An operon encoding 4 proteins required for bacterial cellulose biosynthesis (bcs) in Acetobacter xylinus (Gluconacetobacter xylinus) has been isolated via genetic complementation with strains lacking cellulose synthase activity []. Nucleotide sequence analysis showed the cellulose synthase operon to consist of 4 genes, designated bcsA, bcsB, bcsC and bcsD, all of which are required for maximal bacterial cellulose synthesis in A. xylinum. The calculated molecular mass of the protein encoded by bcsB is 85.3kDa []. BcsB encodes the catalytic subunit of cellulose synthase. The protein polymerises uridine 5'-diphosphate glucose to cellulose: UDP-glucose + (1,4-beta-D-glucosyl)(N) = UDP + (1,4-beta-D-glucosyl)(N+1). The enzyme is specifically activated by the nucleotide cyclic diguanylic acid. Sequence analysis suggests that BcsB contains several transmembrane (TM) domains, and shares a high degree of similarity with Escherichia coli YhjN.; GO: 0006011 UDP-glucose metabolic process, 0016020 membrane
Probab=47.62 E-value=72 Score=37.45 Aligned_cols=71 Identities=25% Similarity=0.350 Sum_probs=47.2
Q ss_pred EeccCCCcccccCCCceEEEEcc--------ccceEEEEECCEEEEEEEcC----cCCceEEEecccccCCCccEEEEEE
Q 006249 484 STNIKADEPLLEDGSKTVLHVQS--------LGHALHAFINGKLVGSGYGS----SSNAKVTVDFPIALAPGKNTFDLLS 551 (654)
Q Consensus 484 ~i~~~~~~~~~~~g~~~~L~l~~--------~~d~~~VfVNG~~vGt~~g~----~~~~~~~~~~~v~Lk~G~N~L~ILv 551 (654)
.|.+|. +.+.|.+..+.|.+.- -+-...|+|||++|++..=. .....+++..+-.+..|.|+|++..
T Consensus 329 ~f~lP~-dl~~~~~~~i~l~L~y~y~~~~~~~~S~l~V~vNg~~i~s~~L~~~~~~~~~~~~v~iP~~~~~~~N~l~~~f 407 (605)
T PF03170_consen 329 NFRLPP-DLFAWDGSGIPLHLRYRYTPGLDFDGSRLTVYVNGQFIGSLPLTPADGAGFDRYTVSIPRLLLPGRNQLQFEF 407 (605)
T ss_pred EeeCCc-cccccCCCceEEEEEEecCCCCCCCCcEEEEEECCEEEEeEECCCCCCCccceeEEecCchhcCCCcEEEEEE
Confidence 345554 3345666666666542 26678999999999987522 2334566666666788999999877
Q ss_pred eecC
Q 006249 552 LTVG 555 (654)
Q Consensus 552 ~n~G 555 (654)
.-..
T Consensus 408 ~l~~ 411 (605)
T PF03170_consen 408 DLPP 411 (605)
T ss_pred Eeec
Confidence 6553
No 164
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=47.28 E-value=54 Score=35.13 Aligned_cols=87 Identities=20% Similarity=0.315 Sum_probs=58.0
Q ss_pred HHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcE--EEEecCc--------ccccccCCCCCCc
Q 006249 61 LIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLY--AHLRIGP--------YVCAEWNFGGFPL 130 (654)
Q Consensus 61 ~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~--Vilr~GP--------yi~aEw~~GG~P~ 130 (654)
.|++-.++|.+.+-|-. .||.+ .+.+|++.|++.|+. |+.-+-| ++ ++...-++|.
T Consensus 168 ~Lk~K~~aGA~~~iTQ~----------~Fd~~---~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~-~~~~Gv~vP~ 233 (296)
T PRK09432 168 NLKRKVDAGANRAITQF----------FFDVE---SYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKF-ADMTNVRIPA 233 (296)
T ss_pred HHHHHHHcCCCeeeccc----------ccchH---HHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHH-HHccCCCCCH
Confidence 45555679998888833 34444 889999999999955 4555444 34 6777788999
Q ss_pred ccccC-CCeeeecCC-hhHHHHHHHHHHHHHHHHHh
Q 006249 131 WLHFI-PGIQFRTDN-EPFKAEMQRFTAKIVDMMKQ 164 (654)
Q Consensus 131 WL~~~-p~~~~R~~d-~~y~~~~~~~~~~l~~~i~~ 164 (654)
|+.+. .. . .+| +..+++--++..++++.+.+
T Consensus 234 ~l~~~l~~--~-~d~~~~~~~~Gi~~a~e~i~~L~~ 266 (296)
T PRK09432 234 WMAKMFDG--L-DDDAETRKLVGASIAMDMVKILSR 266 (296)
T ss_pred HHHHHHHh--c-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99851 11 1 133 33555666677777777763
No 165
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=47.05 E-value=27 Score=36.06 Aligned_cols=55 Identities=11% Similarity=0.018 Sum_probs=38.2
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCCCCCC----CceeeccccchHHHHHHHHHHcCcEEEEec
Q 006249 57 MWPDLIQKSKDGGLDVIETYVFWNLHEPV----RNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (654)
Q Consensus 57 ~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~----~G~~dF~g~~dl~~fl~la~~~GL~Vilr~ 115 (654)
.+++.++.++++|+.+|.+. ..+... +-.+... ...|.++.++|+++|+.+.+.+
T Consensus 91 ~~~~~i~~a~~lGa~~i~~~---~~~~~~~~~~~~~~~~~-~~~l~~l~~~a~~~gv~l~iE~ 149 (275)
T PRK09856 91 MIKLAMDMAKEMNAGYTLIS---AAHAGYLTPPNVIWGRL-AENLSELCEYAENIGMDLILEP 149 (275)
T ss_pred HHHHHHHHHHHhCCCEEEEc---CCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHcCCEEEEec
Confidence 55677889999999999662 222211 1112211 1378999999999999999997
No 166
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=46.63 E-value=1.3e+02 Score=30.60 Aligned_cols=45 Identities=22% Similarity=0.354 Sum_probs=32.2
Q ss_pred HHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEE
Q 006249 59 PDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAH 112 (654)
Q Consensus 59 ~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vi 112 (654)
++.++.|+++|++++.+- |=|| |||. ..-|.+.++.+++.|+..+
T Consensus 63 ~~~~~~l~~~G~d~~~la---NNH~-----fD~G-~~gl~~t~~~l~~a~i~~~ 107 (239)
T smart00854 63 PENAAALKAAGFDVVSLA---NNHS-----LDYG-EEGLLDTLAALDAAGIAHV 107 (239)
T ss_pred HHHHHHHHHhCCCEEEec---cCcc-----cccc-hHHHHHHHHHHHHCCCCEe
Confidence 356889999999999882 2454 4443 3457788888888888654
No 167
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=45.76 E-value=44 Score=34.80 Aligned_cols=50 Identities=28% Similarity=0.266 Sum_probs=39.6
Q ss_pred HHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEEecC
Q 006249 61 LIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (654)
Q Consensus 61 ~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~G 116 (654)
...++|++|++.|-+ +|-|.+. -|.- .+.++.+=++.|.++||.+|++.|
T Consensus 76 S~~mL~d~G~~~vii----GHSERR~-~f~E-t~~~i~~Kv~~a~~~gl~pIvCiG 125 (242)
T cd00311 76 SAEMLKDAGAKYVII----GHSERRQ-YFGE-TDEDVAKKVKAALEAGLTPILCVG 125 (242)
T ss_pred CHHHHHHcCCCEEEe----CcccccC-cCCC-CcHHHHHHHHHHHHCCCEEEEEeC
Confidence 456899999999998 6555543 3333 366899999999999999999987
No 168
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=45.62 E-value=1.2e+02 Score=32.22 Aligned_cols=119 Identities=13% Similarity=0.090 Sum_probs=80.2
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccc
Q 006249 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLH 133 (654)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~ 133 (654)
.-+..+-+|+.+|.-+. +||+|- +.-.-|+.++.++.+.|++|+|.+ |+.
T Consensus 61 Sa~~~~sDLe~l~~~t~-~IR~Y~--------------sDCn~le~v~pAa~~~g~kv~lGi---------------w~t 110 (305)
T COG5309 61 SADQVASDLELLASYTH-SIRTYG--------------SDCNTLENVLPAAEASGFKVFLGI---------------WPT 110 (305)
T ss_pred CHHHHHhHHHHhccCCc-eEEEee--------------ccchhhhhhHHHHHhcCceEEEEE---------------eec
Confidence 45668889999999888 999984 122367889999999999999876 444
Q ss_pred cCCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccccccccC-cccHHHHHHHHHHHhhcCCC
Q 006249 134 FIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSAYG-AAGKSYIKWAAGMALSLDTG 212 (654)
Q Consensus 134 ~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QIENEyg~~~~~~g-~~~~~y~~~l~~~~~~~g~~ 212 (654)
. ++ . ..+++ .++..+. +. ..--.|..+-|.||-=...+ .. ..--+|+...|...+++|.+
T Consensus 111 d--d~-------~--~~~~~---til~ay~--~~--~~~d~v~~v~VGnEal~r~~-~tasql~~~I~~vrsav~~agy~ 171 (305)
T COG5309 111 D--DI-------H--DAVEK---TILSAYL--PY--NGWDDVTTVTVGNEALNRND-LTASQLIEYIDDVRSAVKEAGYD 171 (305)
T ss_pred c--ch-------h--hhHHH---HHHHHHh--cc--CCCCceEEEEechhhhhcCC-CCHHHHHHHHHHHHHHHHhcCCC
Confidence 2 11 1 12222 3333333 21 11247889999999632111 11 13457999999999999999
Q ss_pred cceEEccCC
Q 006249 213 VPWVMCQQS 221 (654)
Q Consensus 213 vP~~~~~~~ 221 (654)
+|+.+.+.+
T Consensus 172 gpV~T~dsw 180 (305)
T COG5309 172 GPVTTVDSW 180 (305)
T ss_pred Cceeecccc
Confidence 999987775
No 169
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=45.52 E-value=30 Score=38.72 Aligned_cols=70 Identities=10% Similarity=0.263 Sum_probs=47.5
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeecccc--chHHHHHHHHHHcCcEEEEecCcccccccC
Q 006249 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGR--YDLVKFVKLVAEAGLYAHLRIGPYVCAEWN 124 (654)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~--~dl~~fl~la~~~GL~Vilr~GPyi~aEw~ 124 (654)
..+...+.++.+++.|+-.=...+-..+.. ..+.|.|+.. -|...+++.+++.|+++++..-|+|+-+-.
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~-~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~ 112 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIWIDDDYQD-GYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSP 112 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEE-GGGSB-TTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTT
T ss_pred CHHHHHHHHHHHHHcCCCccceeccccccc-cccccccccccccchHHHHHhHhhCCcEEEEEeecccCCCCC
Confidence 466678999999999997766655433222 4445555432 289999999999999999999888866643
No 170
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=44.42 E-value=1.9e+02 Score=31.51 Aligned_cols=75 Identities=19% Similarity=0.298 Sum_probs=52.4
Q ss_pred cCcEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEccc----CCCCCC------CCceeeccc---cchH
Q 006249 31 HRAVVIGGKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVF----WNLHEP------VRNQYNFEG---RYDL 97 (654)
Q Consensus 31 ~~~~~idG~p~~~~sG~iHy~R~~~~~W~~~l~k~Ka~G~N~V~tyv~----Wn~hEp------~~G~~dF~g---~~dl 97 (654)
.|+|+||=-| |+ .+.+...+.|+.|-...+|+...++- |.+--+ +.|.|.=.| ..|+
T Consensus 3 ~RG~mlDvaR--------~f--~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di 72 (348)
T cd06562 3 HRGLLLDTSR--------HF--LSVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDV 72 (348)
T ss_pred ccceeeeccc--------cC--CCHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHHH
Confidence 3566666444 33 36888999999999999999998752 544322 123222111 3499
Q ss_pred HHHHHHHHHcCcEEEEec
Q 006249 98 VKFVKLVAEAGLYAHLRI 115 (654)
Q Consensus 98 ~~fl~la~~~GL~Vilr~ 115 (654)
..+++.|++.|+.||..+
T Consensus 73 ~eiv~yA~~rgI~vIPEI 90 (348)
T cd06562 73 KEIVEYARLRGIRVIPEI 90 (348)
T ss_pred HHHHHHHHHcCCEEEEec
Confidence 999999999999999874
No 171
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=44.04 E-value=86 Score=33.85 Aligned_cols=63 Identities=8% Similarity=0.077 Sum_probs=46.6
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEcc----cCCCCCC------CCceee-ccccchHHHHHHHHHHcCcEEEEec
Q 006249 53 STPEMWPDLIQKSKDGGLDVIETYV----FWNLHEP------VRNQYN-FEGRYDLVKFVKLVAEAGLYAHLRI 115 (654)
Q Consensus 53 ~~~~~W~~~l~k~Ka~G~N~V~tyv----~Wn~hEp------~~G~~d-F~g~~dl~~fl~la~~~GL~Vilr~ 115 (654)
.+.+...+.|+.|....+|+...++ -|-+--+ +.|.+. |=-..|+..+++.|++.|+.||..+
T Consensus 15 ~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT~~di~elv~yA~~rgI~vIPEI 88 (311)
T cd06570 15 IPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYTQEQIREVVAYARDRGIRVVPEI 88 (311)
T ss_pred cCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccCHHHHHHHHHHHHHcCCEEEEee
Confidence 4789999999999999999999987 4653211 122111 1113499999999999999999774
No 172
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=43.96 E-value=41 Score=36.51 Aligned_cols=73 Identities=14% Similarity=0.159 Sum_probs=51.5
Q ss_pred eeCCCC---CcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeecccc--chHHHHHHHHHHcCcEEEEecCccccc
Q 006249 48 IHYPRS---TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGR--YDLVKFVKLVAEAGLYAHLRIGPYVCA 121 (654)
Q Consensus 48 iHy~R~---~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~--~dl~~fl~la~~~GL~Vilr~GPyi~a 121 (654)
+|..|. +.+..++.++++++.||.+=.+.+-+.+.. .-+.|+|+-. -|..++++..++.|++|++..=|+|+.
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~~ 90 (339)
T cd06604 13 YQQSRWSYYPEEEVREIADEFRERDIPCDAIYLDIDYMD-GYRVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVKV 90 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECchhhC-CCCceeeccccCCCHHHHHHHHHHCCCEEEEEEeCceeC
Confidence 455553 556678899999999986544443333332 3445666543 378999999999999999988888854
No 173
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=43.63 E-value=41 Score=36.10 Aligned_cols=62 Identities=24% Similarity=0.315 Sum_probs=41.8
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCC---CCCCCCceee-ccc----cchHHHHHHHHHHcCcEEEEec
Q 006249 54 TPEMWPDLIQKSKDGGLDVIETYVFWN---LHEPVRNQYN-FEG----RYDLVKFVKLVAEAGLYAHLRI 115 (654)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn---~hEp~~G~~d-F~g----~~dl~~fl~la~~~GL~Vilr~ 115 (654)
.+..-.++++.+|..|+|++-.-+==. +.=|....++ ..+ -.|+..||+.|+|.|||+|.|+
T Consensus 75 ~kk~~de~fk~ikdn~~Na~ViD~Kdd~G~lty~s~d~~~~~~~sv~~f~Di~~~iKkaKe~giY~IARi 144 (400)
T COG1306 75 LKKRLDELFKLIKDNNINAFVIDVKDDYGELTYPSSDEINKYTKSVNKFKDIEPVIKKAKENGIYAIARI 144 (400)
T ss_pred ChhHHHHHHHHHHhCCCCEEEEEecCCCccEeccccchhhhhhhccccccccHHHHHHHHhcCeEEEEEE
Confidence 456677899999999999987633211 1112222221 000 1399999999999999999996
No 174
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=43.18 E-value=26 Score=33.86 Aligned_cols=63 Identities=16% Similarity=0.053 Sum_probs=42.6
Q ss_pred cccHHHHHHHHHHCCCCEEEEcccC-CCCCCC--CceeeccccchHHHHHHHHHHcCcEEEEecCcc
Q 006249 55 PEMWPDLIQKSKDGGLDVIETYVFW-NLHEPV--RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPY 118 (654)
Q Consensus 55 ~~~W~~~l~k~Ka~G~N~V~tyv~W-n~hEp~--~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPy 118 (654)
.+..++.++.++++|+..|.+...+ ..+.+. +..++.- ...|.++.+.|+++|+.+.+.+-|+
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~-~~~l~~l~~~a~~~gv~i~lE~~~~ 135 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERL-AENLRELAEIAEEYGVRIALENHPG 135 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHH-HHHHHHHHHHHHHHTSEEEEE-SSS
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHH-HHHHHHHHhhhhhhcceEEEecccC
Confidence 3567888999999999999886552 122211 1122211 2478899999999999999998543
No 175
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=43.07 E-value=32 Score=38.54 Aligned_cols=56 Identities=21% Similarity=0.264 Sum_probs=39.5
Q ss_pred HHHHHHHHCCCCEEEE-cccC---CCCCCCCcee-----eccccchHHHHHHHHHHcCcEEEEec
Q 006249 60 DLIQKSKDGGLDVIET-YVFW---NLHEPVRNQY-----NFEGRYDLVKFVKLVAEAGLYAHLRI 115 (654)
Q Consensus 60 ~~l~k~Ka~G~N~V~t-yv~W---n~hEp~~G~~-----dF~g~~dl~~fl~la~~~GL~Vilr~ 115 (654)
+.|.-+|.+|+++|=+ .++= ..|--..-.| .|.+..|+.++++.|++.||+||+-.
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~ 97 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDL 97 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 7888999999999955 2221 1121110000 47778899999999999999999864
No 176
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=42.81 E-value=64 Score=38.31 Aligned_cols=75 Identities=13% Similarity=0.245 Sum_probs=54.1
Q ss_pred CcccHHHHHHHHHHCCCCEEEE---ccc---CC--CCCCCCceeecc---------ccchHHHHHHHHHHcCcEEEEecC
Q 006249 54 TPEMWPDLIQKSKDGGLDVIET---YVF---WN--LHEPVRNQYNFE---------GRYDLVKFVKLVAEAGLYAHLRIG 116 (654)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~N~V~t---yv~---Wn--~hEp~~G~~dF~---------g~~dl~~fl~la~~~GL~Vilr~G 116 (654)
.+..|+ .++.+|+++|=+ |.- |. .-.-.-|-||-+ ...|++++++.|+++||+||+-.=
T Consensus 76 ~~~~wd----yL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlV 151 (688)
T TIGR02455 76 DDALWK----ALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDII 151 (688)
T ss_pred ChHHHH----HHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 566664 688899999976 222 22 222224556632 346999999999999999997742
Q ss_pred --------cccccccCCCCCCccc
Q 006249 117 --------PYVCAEWNFGGFPLWL 132 (654)
Q Consensus 117 --------Pyi~aEw~~GG~P~WL 132 (654)
||.-||.+.+-+|.|.
T Consensus 152 pnHTs~ghdF~lAr~~~~~Y~g~Y 175 (688)
T TIGR02455 152 PAHTGKGADFRLAELAHGDYPGLY 175 (688)
T ss_pred CCCCCCCcchHHHhhcCCCCCCce
Confidence 3889999999999888
No 177
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=42.22 E-value=50 Score=32.70 Aligned_cols=89 Identities=19% Similarity=0.253 Sum_probs=55.4
Q ss_pred EEEEeeCCCCC-----cccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeec--cc-cchHHHHHHHHHHcCcEEEEec
Q 006249 44 ISGSIHYPRST-----PEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNF--EG-RYDLVKFVKLVAEAGLYAHLRI 115 (654)
Q Consensus 44 ~sG~iHy~R~~-----~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF--~g-~~dl~~fl~la~~~GL~Vilr~ 115 (654)
.-|.+||++.. .++.+.-++.++..++.. ...|--.|..++.+.- +- ...+.+|++..+++|.++++-.
T Consensus 54 ~~G~Yhf~~~~~~~~~~~Qa~~f~~~~~~~~~~~---~~i~lDiE~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~~iYt 130 (196)
T cd06416 54 STDVYFFPCINCCGSAAGQVQTFLQYLKANGIKY---GTVWIDIEQNPCQWSSDVASNCQFLQELVSAAKALGLKVGIYS 130 (196)
T ss_pred ccceEEEecCCCCCCHHHHHHHHHHHHHhCCCce---eEEEEEEecCCCCCcCCHHHHHHHHHHHHHHHHHhCCeEEEEc
Confidence 34999998753 555777788888765432 1113333433343321 11 1367899999999999999998
Q ss_pred Ccccc----ccc---CCCCCCcccccC
Q 006249 116 GPYVC----AEW---NFGGFPLWLHFI 135 (654)
Q Consensus 116 GPyi~----aEw---~~GG~P~WL~~~ 135 (654)
+++-. +.. +....|.|+...
T Consensus 131 ~~~~w~~~~~~~~~~~~~~ypLWiA~Y 157 (196)
T cd06416 131 SQYDWSQIFGSSYTCNFSSLPLWYAHY 157 (196)
T ss_pred CcchhccccCCCcCCCcCCCceEecCC
Confidence 88521 111 145789999864
No 178
>PRK14566 triosephosphate isomerase; Provisional
Probab=42.07 E-value=69 Score=33.80 Aligned_cols=50 Identities=24% Similarity=0.198 Sum_probs=38.3
Q ss_pred HHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEEecC
Q 006249 61 LIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (654)
Q Consensus 61 ~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~G 116 (654)
.-.++|++|++.|-+ +|-|.+. .|. +-+..+.+=++.|.++||.+|++.|
T Consensus 87 S~~mL~d~G~~~vii----GHSERR~-~f~-Etd~~v~~Kv~~al~~gl~pIvCvG 136 (260)
T PRK14566 87 SGQMLKDAGCRYVII----GHSERRR-MYG-ETSNIVAEKFAAAQKHGLTPILCVG 136 (260)
T ss_pred CHHHHHHcCCCEEEE----CcccccC-CCC-cCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 346899999999988 6655543 333 2345677789999999999999987
No 179
>PF02228 Gag_p19: Major core protein p19; InterPro: IPR003139 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from delta-retroviruses such as Human T-lymphotropic virus 1 and Human T-cell leukemia virus 2 (HTLV-2), both members of the human oncovirus subclass of retroviruses [, ].; GO: 0005198 structural molecule activity, 0019013 viral nucleocapsid; PDB: 1JVR_A.
Probab=41.86 E-value=12 Score=32.18 Aligned_cols=37 Identities=22% Similarity=0.541 Sum_probs=26.7
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHc
Q 006249 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEA 107 (654)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~ 107 (654)
....|-.-++.+-. .||.|..|||. +|.+||++|-|.
T Consensus 20 s~hhWLNflQaAyR--------------L~PgPS~~DF~---qLr~flk~alkT 56 (92)
T PF02228_consen 20 STHHWLNFLQAAYR--------------LQPGPSSFDFH---QLRNFLKLALKT 56 (92)
T ss_dssp THHHHHHHHHHHHH--------------SS---STTTHH---HHHHHHHHHHT-
T ss_pred CHHHHHHHHHHHHh--------------cCCCCCcccHH---HHHHHHHHHHcC
Confidence 34568777776654 58999999999 999999999884
No 180
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=41.78 E-value=33 Score=37.59 Aligned_cols=65 Identities=11% Similarity=0.017 Sum_probs=46.0
Q ss_pred eeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEEec
Q 006249 48 IHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (654)
Q Consensus 48 iHy~R~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~ 115 (654)
-++ |.+...-....+.++++|.++|.+.|+|.-.++.+ -+-.-..+|.++.+.|++.||-+++.+
T Consensus 99 ~~g-r~~~~~~~~sve~a~~~GAdAVk~lv~~~~d~~~~--~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 99 APG-RLPDLLDNWSVRRIKEAGADAVKLLLYYRPDEDDA--INDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred CCC-CCccccccccHHHHHHcCCCEEEEEEEeCCCcchH--HHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 344 55444444457889999999999999999543310 011223489999999999999998864
No 181
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=41.06 E-value=92 Score=32.76 Aligned_cols=109 Identities=18% Similarity=0.210 Sum_probs=67.9
Q ss_pred eEEEEEEeeCCCCCcc----cHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEEecC
Q 006249 41 RVLISGSIHYPRSTPE----MWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (654)
Q Consensus 41 ~~~~sG~iHy~R~~~~----~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~G 116 (654)
.+-+++..|+.+-|.. .=.++|++-.++|.+.+-|-. .||.+ .+.+|++.|++.|+.+=+.+|
T Consensus 125 ~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f~iTQ~----------~fd~~---~~~~~~~~~~~~gi~~PIi~G 191 (272)
T TIGR00676 125 DFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADYAITQL----------FFDND---DYYRFVDRCRAAGIDVPIIPG 191 (272)
T ss_pred CeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeecc----------ccCHH---HHHHHHHHHHHcCCCCCEecc
Confidence 4678888877754332 223456677789999988833 34444 788999999999776544444
Q ss_pred --ccc-------ccccCCCCCCcccccCCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 006249 117 --PYV-------CAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMK 163 (654)
Q Consensus 117 --Pyi-------~aEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~ 163 (654)
|-. ..+|..-.+|.|+.+.=. ....+....+++--++..++++.+.
T Consensus 192 i~p~~s~k~~~~~~~~~Gv~vP~~~~~~l~-~~~~~~~~~~~~gi~~~~~~~~~l~ 246 (272)
T TIGR00676 192 IMPITNFKQLLRFAERCGAEIPAWLVKRLE-KYDDDPEEVRAVGIEYATDQCEDLI 246 (272)
T ss_pred cCCcCCHHHHHHHHhccCCCCCHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 322 233666778999875100 0111223455566667777777776
No 182
>PF03170 BcsB: Bacterial cellulose synthase subunit; InterPro: IPR018513 An operon encoding 4 proteins required for bacterial cellulose biosynthesis (bcs) in Acetobacter xylinus (Gluconacetobacter xylinus) has been isolated via genetic complementation with strains lacking cellulose synthase activity []. Nucleotide sequence analysis showed the cellulose synthase operon to consist of 4 genes, designated bcsA, bcsB, bcsC and bcsD, all of which are required for maximal bacterial cellulose synthesis in A. xylinum. The calculated molecular mass of the protein encoded by bcsB is 85.3kDa []. BcsB encodes the catalytic subunit of cellulose synthase. The protein polymerises uridine 5'-diphosphate glucose to cellulose: UDP-glucose + (1,4-beta-D-glucosyl)(N) = UDP + (1,4-beta-D-glucosyl)(N+1). The enzyme is specifically activated by the nucleotide cyclic diguanylic acid. Sequence analysis suggests that BcsB contains several transmembrane (TM) domains, and shares a high degree of similarity with Escherichia coli YhjN.; GO: 0006011 UDP-glucose metabolic process, 0016020 membrane
Probab=40.70 E-value=1.1e+02 Score=35.96 Aligned_cols=48 Identities=27% Similarity=0.233 Sum_probs=34.8
Q ss_pred cceEEEEECCEEEEEEEcCcC---CceEEEecccccCCCccEEEEEEeecC
Q 006249 508 GHALHAFINGKLVGSGYGSSS---NAKVTVDFPIALAPGKNTFDLLSLTVG 555 (654)
Q Consensus 508 ~d~~~VfVNG~~vGt~~g~~~---~~~~~~~~~v~Lk~G~N~L~ILv~n~G 555 (654)
.....|+|||+.+|+..=... ...++++.+..|..|.|+|.|.+..--
T Consensus 62 ~S~L~V~lNg~~v~s~~l~~~~~~~~~~~i~Ip~~l~~g~N~l~~~~~~~~ 112 (605)
T PF03170_consen 62 RSQLTVSLNGQPVGSIPLDAESAQPQTVTIPIPPALIKGFNRLTFEFIGHY 112 (605)
T ss_pred cceEEEEECCEEeEEEecCcCCCCceEEEEecChhhcCCceEEEEEEEecc
Confidence 357899999999998762221 235666666668899999999876443
No 183
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=40.53 E-value=1.2e+02 Score=32.87 Aligned_cols=123 Identities=17% Similarity=0.202 Sum_probs=72.6
Q ss_pred HHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccccCCCe
Q 006249 59 PDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGI 138 (654)
Q Consensus 59 ~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~ 138 (654)
..++...++.|.+||=. +.+ =.=.||..++.+.+++.||.++...|+|.-+.|+ .|+...|
T Consensus 51 ~~e~~~~~a~Gg~TIVD--------~T~----~~~GRdv~~m~~vs~atglnIV~~TGfy~~~~~p-----~~~~~~~-- 111 (316)
T COG1735 51 IAELKRLMARGGQTIVD--------ATN----IGIGRDVLKMRRVAEATGLNIVAATGFYKAAFHP-----EYFALRP-- 111 (316)
T ss_pred HHHHHHHHHcCCCeEee--------CCc----cccCcCHHHHHHHHHHhCCcEEEeccccccccch-----hHHhhCC--
Confidence 34566777789988865 221 1123799999999999999999999999988864 6776433
Q ss_pred eeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccccccccCcccHHHHHHHHHHHhhcCCCcceEEc
Q 006249 139 QFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSAYGAAGKSYIKWAAGMALSLDTGVPWVMC 218 (654)
Q Consensus 139 ~~R~~d~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QIENEyg~~~~~~g~~~~~y~~~l~~~~~~~g~~vP~~~~ 218 (654)
++.+...+++.++. .+ .|+=|..=|=-|-|.+.. ..+....-++..++..+ -+++|+.+-
T Consensus 112 ------------i~~~ae~~v~ei~~-Gi----~gT~ikAGiIk~~~~~~~-iTp~Eek~lrAaA~A~~--~Tg~Pi~tH 171 (316)
T COG1735 112 ------------IEELAEFVVKEIEE-GI----AGTGIKAGIIKEAGGSPA-ITPLEEKSLRAAARAHK--ETGAPISTH 171 (316)
T ss_pred ------------HHHHHHHHHHHHHh-cc----cCCccccceeeeccCccc-CCHHHHHHHHHHHHHhh--hcCCCeEEe
Confidence 44555555555551 11 233333333335554322 23223333333333333 457888764
Q ss_pred cC
Q 006249 219 QQ 220 (654)
Q Consensus 219 ~~ 220 (654)
.+
T Consensus 172 t~ 173 (316)
T COG1735 172 TP 173 (316)
T ss_pred cc
Confidence 43
No 184
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=40.11 E-value=43 Score=34.69 Aligned_cols=60 Identities=18% Similarity=0.051 Sum_probs=38.8
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCCCCCCC-ceeeccccchHHHHHHHHHHcCcEEEEecC
Q 006249 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPVR-NQYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (654)
Q Consensus 56 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~-G~~dF~g~~dl~~fl~la~~~GL~Vilr~G 116 (654)
+.+++.|+.++++|++.|.+.-+-...++.. -.++. -...|.++.++|+++|+.+.+.+-
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~a~~~gv~l~lE~~ 154 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQR-FIEGLAWAVEQAAAAQVMLAVEIM 154 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHH-HHHHHHHHHHHHHHhCCEEEEEec
Confidence 4578889999999999998631100011111 01110 113688899999999999999873
No 185
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=39.90 E-value=1.1e+02 Score=28.11 Aligned_cols=65 Identities=14% Similarity=0.240 Sum_probs=39.3
Q ss_pred EEEEEEeccCCCcccccCCCceEEEEccccceEEEEECCEEEEEEEcCcCCceEEEecccccCCC-ccEEEEEEe
Q 006249 479 LWYSLSTNIKADEPLLEDGSKTVLHVQSLGHALHAFINGKLVGSGYGSSSNAKVTVDFPIALAPG-KNTFDLLSL 552 (654)
Q Consensus 479 vWYrT~i~~~~~~~~~~~g~~~~L~l~~~~d~~~VfVNG~~vGt~~g~~~~~~~~~~~~v~Lk~G-~N~L~ILv~ 552 (654)
+-++..|..+.+. .-++.+ ...|.+.+||||+.|-...+.... .......+.|.+| ...|.|.-.
T Consensus 46 ~~~~g~i~~~~~G-------~y~f~~-~~~~~~~l~Idg~~vid~~~~~~~-~~~~~~~v~l~~g~~~~i~v~y~ 111 (136)
T smart00758 46 VRWTGYLKPPEDG-------EYTFSI-TSDDGARLWIDGKLVIDNWGKHEA-RPSTSSTLYLLAGGTYPIRIEYF 111 (136)
T ss_pred EEEEEEEECCCCc-------cEEEEE-EcCCcEEEEECCcEEEcCCccCCC-ccccceeEEEeCCcEEEEEEEEE
Confidence 5667888876543 346777 457889999999999865433210 0111223456666 456665543
No 186
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=39.41 E-value=44 Score=40.08 Aligned_cols=55 Identities=27% Similarity=0.339 Sum_probs=41.7
Q ss_pred HHHHHHHCCCCEEEE-cccCCCCCCCC---c-eeec----------------cc-----cchHHHHHHHHHHcCcEEEEe
Q 006249 61 LIQKSKDGGLDVIET-YVFWNLHEPVR---N-QYNF----------------EG-----RYDLVKFVKLVAEAGLYAHLR 114 (654)
Q Consensus 61 ~l~k~Ka~G~N~V~t-yv~Wn~hEp~~---G-~~dF----------------~g-----~~dl~~fl~la~~~GL~Vilr 114 (654)
.|.-+|.+|+++|+. +|+.-..|+.. | .|+| ++ .+.+..+|+.++++||-|||-
T Consensus 205 ~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILD 284 (697)
T COG1523 205 IIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILD 284 (697)
T ss_pred HHHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEE
Confidence 389999999999997 78866666543 2 1222 22 247889999999999999998
Q ss_pred c
Q 006249 115 I 115 (654)
Q Consensus 115 ~ 115 (654)
.
T Consensus 285 V 285 (697)
T COG1523 285 V 285 (697)
T ss_pred E
Confidence 5
No 187
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=39.24 E-value=42 Score=34.53 Aligned_cols=60 Identities=10% Similarity=-0.054 Sum_probs=39.5
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEEec
Q 006249 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (654)
Q Consensus 56 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~ 115 (654)
+..++.++.++++|+.+|.+...+..-...+.+..-.-...|.++.++|++.|+.+.+.|
T Consensus 85 ~~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~ 144 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHATLVENLRYAANMLMKEDILLLIEP 144 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 346788899999999999874333211111112111112467888899999999999997
No 188
>PLN02784 alpha-amylase
Probab=38.76 E-value=67 Score=39.34 Aligned_cols=57 Identities=18% Similarity=0.117 Sum_probs=39.2
Q ss_pred HHHHHHHHHCCCCEEEEcccCCCCCC---CCc-eee----ccccchHHHHHHHHHHcCcEEEEec
Q 006249 59 PDLIQKSKDGGLDVIETYVFWNLHEP---VRN-QYN----FEGRYDLVKFVKLVAEAGLYAHLRI 115 (654)
Q Consensus 59 ~~~l~k~Ka~G~N~V~tyv~Wn~hEp---~~G-~~d----F~g~~dl~~fl~la~~~GL~Vilr~ 115 (654)
.+.|..++++|+++|-..=+-....+ .+. -|+ |....+|..+|+.|+++||.||+-.
T Consensus 524 ~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 524 GEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 45677899999999988533222111 111 122 2334699999999999999999875
No 189
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=38.30 E-value=1.4e+02 Score=30.46 Aligned_cols=91 Identities=12% Similarity=0.138 Sum_probs=65.4
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeecc-ccchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcc
Q 006249 53 STPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFE-GRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLW 131 (654)
Q Consensus 53 ~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~-g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~W 131 (654)
..+..++..++.++++|+.++-+|....- ....|..+ |..|-..-+++|+++|+ -+ |-|-+
T Consensus 49 ~~k~lt~~e~~~i~~~Gl~~~pIyq~~~~---~~~~~~~~~G~~dA~~A~~~A~~lG~----p~-----------gs~IY 110 (212)
T cd06418 49 LSKNLTATELETITAAGLKVFPIYQGGGY---SLDYFGYEQGVKDARDAVAAARALGF----PP-----------GTIIY 110 (212)
T ss_pred CCCCCCHHHHHHHHHCCCEEEEEEECCCc---cccccCHHHHHHHHHHHHHHHHHcCC----CC-----------CCEEE
Confidence 36788999999999999999999987764 22233333 77899999999999998 22 23334
Q ss_pred cccCCCeeeecCChhHHHHHHHHHHHHHHHHHhc
Q 006249 132 LHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQE 165 (654)
Q Consensus 132 L~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~ 165 (654)
+--+.+. .+..+...+..|++.+.+.|+..
T Consensus 111 favD~d~----~~~~~~~~v~~Y~~a~~~~l~~~ 140 (212)
T cd06418 111 FAVDFDA----LDDEVTEVILPYFRGWNDALHEA 140 (212)
T ss_pred EEeecCC----CcchhHHHHHHHHHHHHHHHHhc
Confidence 4322221 33447788999999999988844
No 190
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=38.19 E-value=2.3e+02 Score=28.71 Aligned_cols=45 Identities=24% Similarity=0.437 Sum_probs=32.1
Q ss_pred HHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEE
Q 006249 59 PDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAH 112 (654)
Q Consensus 59 ~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vi 112 (654)
++.++.|+++|++++.+- |=|| |||. ..-|.+.++..++.|+..+
T Consensus 67 ~~~~~~L~~~G~d~~tla---NNH~-----fD~G-~~gl~~t~~~l~~~~i~~~ 111 (239)
T cd07381 67 PEVADALKAAGFDVVSLA---NNHT-----LDYG-EEGLLDTLDALDEAGIAHA 111 (239)
T ss_pred HHHHHHHHHhCCCEEEcc---cccc-----cccc-hHHHHHHHHHHHHcCCcee
Confidence 356789999999999882 3453 5553 3356677788888898754
No 191
>PRK14565 triosephosphate isomerase; Provisional
Probab=38.09 E-value=58 Score=33.88 Aligned_cols=50 Identities=16% Similarity=0.156 Sum_probs=35.8
Q ss_pred HHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEEecC
Q 006249 61 LIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (654)
Q Consensus 61 ~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~G 116 (654)
...++|++|++.|-+ +|-|.+. .|+=+ +..+.+=++.|.++||.+|++.|
T Consensus 77 S~~mLkd~G~~~vii----GHSERR~-~f~Et-d~~V~~Kv~~al~~gl~pIvCiG 126 (237)
T PRK14565 77 SAKMLKECGCSYVIL----GHSERRS-TFHET-DSDIRLKAESAIESGLIPIICVG 126 (237)
T ss_pred CHHHHHHcCCCEEEE----CcccccC-cCCcC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 456899999999988 6666553 33222 23344444899999999999997
No 192
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=38.00 E-value=4.1e+02 Score=29.64 Aligned_cols=157 Identities=13% Similarity=0.112 Sum_probs=84.1
Q ss_pred eeEEEecCcEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHC--CCCEEEEcccCCCCCCCCceeeccccchHHHHHH
Q 006249 25 ANVTYDHRAVVIGGKRRVLISGSIHYPRSTPEMWPDLIQKSKDG--GLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVK 102 (654)
Q Consensus 25 ~~v~~d~~~~~idG~p~~~~sG~iHy~R~~~~~W~~~l~k~Ka~--G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~ 102 (654)
..|+.-...|.--|-||-.+.+ ..-+| ++++..+++.+++.+ +.-.|+..++| +.. .|+.++.+
T Consensus 11 ~~~~~~~w~~~~~~tRf~~f~~-~g~~r-~~~e~~~d~~~v~~L~~~~~~v~lH~~~------d~~------~d~~~~~~ 76 (378)
T TIGR02635 11 LKIETPSWAYGNSGTRFKVFHQ-EGAAR-NVFEKIEDAALVHRLTGICPTVALHIPW------DRV------EDYEELAR 76 (378)
T ss_pred cEeeccccccCCCCcccccCCC-CCCCC-CHHHHHHHHHHHHhhcCCCCceeeccCC------ccc------cCHHHHHH
Confidence 4566666666666777643222 11122 233444555555544 22455665555 222 36779999
Q ss_pred HHHHcCcEEE-EecCcccccccCCCCCCcccccCCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceE-eecc
Q 006249 103 LVAEAGLYAH-LRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPII-LSQI 180 (654)
Q Consensus 103 la~~~GL~Vi-lr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII-~~QI 180 (654)
+++++||.|. +-|+=|-...+.. + .+-+.||..++..-++..+.++.-+ .+ |.+.| .| +
T Consensus 77 ~l~~~GL~v~~i~p~~f~~~~~~~-----------G-SLt~pD~~vR~~AIe~~k~~idiA~--eL----Ga~~I~iW-~ 137 (378)
T TIGR02635 77 YAEELGLKIGAINPNLFQDDDYKF-----------G-SLTHPDKRIRRKAIDHLLECVDIAK--KT----GSKDISLW-L 137 (378)
T ss_pred HHHHcCCceeeeeCCccCCcccCC-----------C-CCCCCCHHHHHHHHHHHHHHHHHHH--Hh----CCCeEEEe-c
Confidence 9999999987 6665221111111 2 3566788888887777777766666 33 55443 34 2
Q ss_pred c--ccccccccccCcccHHHHHHHHHHHhhcCCCcce
Q 006249 181 E--NEYGNIDSAYGAAGKSYIKWAAGMALSLDTGVPW 215 (654)
Q Consensus 181 E--NEyg~~~~~~g~~~~~y~~~l~~~~~~~g~~vP~ 215 (654)
- -+|... ..+.+.-+.+.+.|.+++...+-++.+
T Consensus 138 ~DG~~~~g~-~~~~~a~~rl~esL~eI~~~~~~~v~~ 173 (378)
T TIGR02635 138 ADGTNYPGQ-DDFRSRKDRLEESLAEVYEHLGADMRL 173 (378)
T ss_pred CCcCcCCcc-cCHHHHHHHHHHHHHHHHHhCcCCCEE
Confidence 1 122211 112222345667778887554345444
No 193
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=37.49 E-value=67 Score=35.03 Aligned_cols=73 Identities=12% Similarity=0.149 Sum_probs=50.2
Q ss_pred eeCCCC---CcccHHHHHHHHHHCCCCEEEEcc----------cCCCCCCC---------Cceeeccc-c--chHHHHHH
Q 006249 48 IHYPRS---TPEMWPDLIQKSKDGGLDVIETYV----------FWNLHEPV---------RNQYNFEG-R--YDLVKFVK 102 (654)
Q Consensus 48 iHy~R~---~~~~W~~~l~k~Ka~G~N~V~tyv----------~Wn~hEp~---------~G~~dF~g-~--~dl~~fl~ 102 (654)
+|..|. ..+.-++.++++++.||.+=-+++ .|+-..-. =+.++|.. . -|..++|+
T Consensus 13 ~~~sr~~Y~~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~ 92 (340)
T cd06597 13 LWMSANEWDTQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMID 92 (340)
T ss_pred hhhhccCCCCHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHH
Confidence 566664 456678899999999997666544 24422111 13334432 1 28999999
Q ss_pred HHHHcCcEEEEecCcccc
Q 006249 103 LVAEAGLYAHLRIGPYVC 120 (654)
Q Consensus 103 la~~~GL~Vilr~GPyi~ 120 (654)
..++.|++|+|..=|+|.
T Consensus 93 ~Lh~~G~kv~l~v~P~i~ 110 (340)
T cd06597 93 ELHEQGVKVLLWQIPIIK 110 (340)
T ss_pred HHHHCCCEEEEEecCccc
Confidence 999999999999888885
No 194
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=36.24 E-value=1.9e+02 Score=30.00 Aligned_cols=103 Identities=12% Similarity=0.114 Sum_probs=57.3
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEcccCCCCCCC-Cceeec----cccchHHHHHHHHHHcCcEEEEecCcccccccCCCC
Q 006249 53 STPEMWPDLIQKSKDGGLDVIETYVFWNLHEPV-RNQYNF----EGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGG 127 (654)
Q Consensus 53 ~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~-~G~~dF----~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG 127 (654)
+.++.-+..-+.+++.|+.....-. ..|.+. ++.-|= .....+.+.|++|++.|..+|.-+|
T Consensus 54 ~~~~~~~~l~~~l~~~gl~i~~~~~--~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~i~~~~----------- 120 (283)
T PRK13209 54 WSREQRLALVNALVETGFRVNSMCL--SAHRRFPLGSEDDAVRAQALEIMRKAIQLAQDLGIRVIQLAG----------- 120 (283)
T ss_pred CCHHHHHHHHHHHHHcCCceeEEec--ccccccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECC-----------
Confidence 4566677777888899998766411 122211 111000 0123578899999999999775321
Q ss_pred CCcccccCCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeeccccccc
Q 006249 128 FPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYG 185 (654)
Q Consensus 128 ~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QIENEyg 185 (654)
.+.|.. ..++...+.+...++.|+++.+++ | |-+.|||-.+
T Consensus 121 ~~~~~~--------~~~~~~~~~~~~~l~~l~~~A~~~-------G--V~i~iE~~~~ 161 (283)
T PRK13209 121 YDVYYE--------QANNETRRRFIDGLKESVELASRA-------S--VTLAFEIMDT 161 (283)
T ss_pred cccccc--------ccHHHHHHHHHHHHHHHHHHHHHh-------C--CEEEEeecCC
Confidence 121211 123444455566677777777743 3 3456777533
No 195
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=35.95 E-value=1e+02 Score=33.91 Aligned_cols=53 Identities=15% Similarity=0.248 Sum_probs=36.1
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEEec
Q 006249 57 MWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (654)
Q Consensus 57 ~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~ 115 (654)
.|...++.+++.|++.|.-+...-.-....+. .-...+++.|+++||.|+.+.
T Consensus 246 ~~~~~l~~i~a~~a~~i~P~~~~l~~~~~~~~------~~~~~~v~~Ah~~GL~V~~WT 298 (356)
T cd08560 246 TWSPSMDELKARGVNIIAPPIWMLVDPDENGK------IVPSEYAKAAKAAGLDIITWT 298 (356)
T ss_pred cHHHHHHHHHhCCccEecCchhhccccccccc------cCCHHHHHHHHHcCCEEEEEE
Confidence 48888999999999987764432222211111 123589999999999999764
No 196
>PRK15492 triosephosphate isomerase; Provisional
Probab=35.56 E-value=77 Score=33.42 Aligned_cols=50 Identities=14% Similarity=0.076 Sum_probs=38.7
Q ss_pred HHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEEecC
Q 006249 61 LIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (654)
Q Consensus 61 ~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~G 116 (654)
.-.++|++|++.|-+ +|-|.+. .|. +-+..+.+=++.|.++||.+|++.|
T Consensus 86 Sa~mLkd~G~~~vii----GHSERR~-~f~-Etd~~v~~Kv~~a~~~gl~pIvCiG 135 (260)
T PRK15492 86 SPLMLKEIGTQLVMI----GHSERRH-KFG-ETDQEENAKVLAALKHDFTTLLCVG 135 (260)
T ss_pred CHHHHHHcCCCEEEE----Ccccccc-ccC-cchHHHHHHHHHHHHCCCEEEEEcC
Confidence 456899999999998 6555544 443 2355677788999999999999987
No 197
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=35.34 E-value=77 Score=33.28 Aligned_cols=72 Identities=21% Similarity=0.064 Sum_probs=45.6
Q ss_pred CEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEEecC
Q 006249 38 GKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (654)
Q Consensus 38 G~p~~~~sG~iHy~R~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~G 116 (654)
| ++.+..=.+|+.-.-.-.=+=...++|++|++.|-+ +|-|.+. .|+= -+..+.+=++.|.++||.+||+.|
T Consensus 58 g-~i~~gAQn~~~~~~GA~TGeiS~~mL~d~G~~~vii----GHSERR~-~~~E-~d~~i~~K~~aa~~~Gl~pIlCvG 129 (251)
T COG0149 58 G-NIKVGAQNVDPEDSGAFTGEISAEMLKDLGAKYVLI----GHSERRL-YFGE-TDELIAKKVKAAKEAGLTPILCVG 129 (251)
T ss_pred C-CceEEeccCCcccCCCccCcCCHHHHHHcCCCEEEE----Ccccccc-cccc-chHHHHHHHHHHHHCCCeEEEEcC
Confidence 5 444444445544221111122345899999999998 7665543 2222 234566888999999999999986
No 198
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=35.32 E-value=1.6e+02 Score=29.91 Aligned_cols=125 Identities=17% Similarity=0.184 Sum_probs=70.3
Q ss_pred cccHHHHHHHHHHCCCCE-EEE--cccCCCCCC---CCce--eec-----------cc--cchHHHHHHHHHHcCcEEEE
Q 006249 55 PEMWPDLIQKSKDGGLDV-IET--YVFWNLHEP---VRNQ--YNF-----------EG--RYDLVKFVKLVAEAGLYAHL 113 (654)
Q Consensus 55 ~~~W~~~l~k~Ka~G~N~-V~t--yv~Wn~hEp---~~G~--~dF-----------~g--~~dl~~fl~la~~~GL~Vil 113 (654)
++.-.+.++++|+.|+.+ |+| |++|..-+. .=.. +|+ +| +..+-+.|+.+.+.|..+.+
T Consensus 53 ~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~~D~~l~DiK~~d~~~~~~~tG~~~~~il~nl~~l~~~g~~v~i 132 (213)
T PRK10076 53 AEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRVLENLRLLVSEGVNVIP 132 (213)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHhcCEEEEeeccCCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEEE
Confidence 455678899999999864 555 444422111 1111 222 22 23555677888888988888
Q ss_pred ecCcccccccCCCCCCcccccCCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccc-----------
Q 006249 114 RIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIEN----------- 182 (654)
Q Consensus 114 r~GPyi~aEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QIEN----------- 182 (654)
|. |.| |++ ++++.-++++.+|+..+. +. +|-+..--+
T Consensus 133 R~-~vI----------------Pg~---nd~~e~i~~ia~~l~~l~--~~----------~~~llpyh~~g~~Ky~~lg~ 180 (213)
T PRK10076 133 RL-PLI----------------PGF---TLSRENMQQALDVLIPLG--IK----------QIHLLPFHQYGEPKYRLLGK 180 (213)
T ss_pred EE-EEE----------------CCC---CCCHHHHHHHHHHHHHcC--Cc----------eEEEecCCccchhHHHHcCC
Confidence 86 332 553 245666566555554431 11 221111111
Q ss_pred cccccccccCcccHHHHHHHHHHHhhcCCCc
Q 006249 183 EYGNIDSAYGAAGKSYIKWAAGMALSLDTGV 213 (654)
Q Consensus 183 Eyg~~~~~~g~~~~~y~~~l~~~~~~~g~~v 213 (654)
+|-.. .......+.++.+++++++.|+.+
T Consensus 181 ~y~~~--~~~~~~~~~l~~~~~~~~~~gl~~ 209 (213)
T PRK10076 181 TWSMK--EVPAPSSADVATMREMAERAGFQV 209 (213)
T ss_pred cCccC--CCCCcCHHHHHHHHHHHHHcCCeE
Confidence 22211 112467889999999999999876
No 199
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=35.24 E-value=58 Score=34.14 Aligned_cols=52 Identities=21% Similarity=0.292 Sum_probs=34.2
Q ss_pred HHHHHHHHHCCCCEEEEcccCC--CCCCCCceeeccccchHHHHHHHHHHcCcEEEE
Q 006249 59 PDLIQKSKDGGLDVIETYVFWN--LHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHL 113 (654)
Q Consensus 59 ~~~l~k~Ka~G~N~V~tyv~Wn--~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vil 113 (654)
++.+++||++|++.|...+--+ .++..-+..+|+ +..+.++.++++|+.|..
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~---~~~~ai~~l~~~Gi~v~~ 176 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYD---DRVDTLENAKKAGLKVCS 176 (296)
T ss_pred HHHHHHHHHcCCCEEEEcccCCHHHHhhccCCCCHH---HHHHHHHHHHHcCCEEEE
Confidence 6788999999999988854411 111111223444 566778999999998743
No 200
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=35.24 E-value=2.6e+02 Score=29.18 Aligned_cols=83 Identities=10% Similarity=0.074 Sum_probs=50.9
Q ss_pred HHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEE--EEecCcccccccCCCCCCcccccCC
Q 006249 59 PDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYA--HLRIGPYVCAEWNFGGFPLWLHFIP 136 (654)
Q Consensus 59 ~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~V--ilr~GPyi~aEw~~GG~P~WL~~~p 136 (654)
.+.++.+++.|+++|+.++- .|+--....-...+..+|-+.++++++.+ +.-=+||.
T Consensus 14 ~~a~~~~~~~G~~~~qif~~----~P~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Hapy~----------------- 72 (274)
T TIGR00587 14 QAAYNRAAEIGATAFMFFLK----SPRWWRRPMLEEEVIDWFKAALETNKNLSQIVLVHAPYL----------------- 72 (274)
T ss_pred HHHHHHHHHhCCCEEEEEec----CccccCCCCCCHHHHHHHHHHHHHcCCCCcceeccCCee-----------------
Confidence 56899999999999999543 22211111112347888889999998863 33334443
Q ss_pred CeeeecCChhHHHHHHHHHHHHHHHHH
Q 006249 137 GIQFRTDNEPFKAEMQRFTAKIVDMMK 163 (654)
Q Consensus 137 ~~~~R~~d~~y~~~~~~~~~~l~~~i~ 163 (654)
+.+-+.|+.-++...+.+.+.++.-+
T Consensus 73 -iNlas~~~~~r~~sv~~~~~~i~~A~ 98 (274)
T TIGR00587 73 -INLASPDEEKEEKSLDVLDEELKRCE 98 (274)
T ss_pred -eecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 12334566666666666666555555
No 201
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=35.10 E-value=77 Score=33.76 Aligned_cols=61 Identities=20% Similarity=0.209 Sum_probs=43.4
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCCCCC--CCceeeccccchHHHHHHHHHHcCcEEEEec
Q 006249 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEP--VRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (654)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp--~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~ 115 (654)
.++..++.++.+++.|.+.|-+|.-+..-.+ .++.-.++ ...+.+++++|+++|+.|.+..
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~-~e~l~~~~~~A~~~g~~v~~H~ 180 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFS-EEELRAIVDEAHKAGLYVAAHA 180 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcC-HHHHHHHHHHHHHcCCEEEEEe
Confidence 4677899999999999999999875432111 12211122 2378899999999999988764
No 202
>PLN02429 triosephosphate isomerase
Probab=34.72 E-value=67 Score=34.82 Aligned_cols=50 Identities=18% Similarity=0.037 Sum_probs=34.4
Q ss_pred HHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEEecC
Q 006249 61 LIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (654)
Q Consensus 61 ~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~G 116 (654)
...++|++|++.|-+ +|-|.+. .|.=+ +..+.+=++.|.++||.+|+++|
T Consensus 139 Sa~mLkd~Gv~~Vii----GHSERR~-~f~Et-d~~V~~Kv~~al~~GL~pIvCIG 188 (315)
T PLN02429 139 SVEQLKDLGCKWVIL----GHSERRH-VIGEK-DEFIGKKAAYALSEGLGVIACIG 188 (315)
T ss_pred CHHHHHHcCCCEEEe----CccccCC-CCCcC-HHHHHHHHHHHHHCcCEEEEEcC
Confidence 346899999999988 6666543 33322 22333334449999999999997
No 203
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=34.57 E-value=77 Score=36.03 Aligned_cols=56 Identities=27% Similarity=0.350 Sum_probs=46.0
Q ss_pred eeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEEec
Q 006249 48 IHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (654)
Q Consensus 48 iHy~R~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~ 115 (654)
..|-+.|.+.-++.++++.+.|++.|++..+-|.. +++...++.|+++|+.|.+.+
T Consensus 88 ~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~------------~n~~~~v~~ak~~G~~v~~~i 143 (448)
T PRK12331 88 LGYRNYADDVVESFVQKSVENGIDIIRIFDALNDV------------RNLETAVKATKKAGGHAQVAI 143 (448)
T ss_pred cccccCchhhHHHHHHHHHHCCCCEEEEEEecCcH------------HHHHHHHHHHHHcCCeEEEEE
Confidence 44666788888899999999999999998876643 268889999999999886654
No 204
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=34.33 E-value=1.2e+02 Score=31.57 Aligned_cols=55 Identities=18% Similarity=0.200 Sum_probs=39.1
Q ss_pred HHHHHHHHHCCCCEEEEcccCCCCCCCCceee--ccccchHHHH-HHHHHHcCcEEEEecC
Q 006249 59 PDLIQKSKDGGLDVIETYVFWNLHEPVRNQYN--FEGRYDLVKF-VKLVAEAGLYAHLRIG 116 (654)
Q Consensus 59 ~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~d--F~g~~dl~~f-l~la~~~GL~Vilr~G 116 (654)
.++|.||+..|+.+|=|--+|-+--..++.|- |+ .|..+ ..-|.+.||.+-+..|
T Consensus 14 ~eDlekMa~sGI~~Vit~AhdP~~~~~~~v~~~h~~---rl~~~E~~Ra~~~Gl~~~vavG 71 (254)
T COG1099 14 FEDLEKMALSGIREVITLAHDPYPMKTAEVYLDHFR---RLLGVEPERAEKAGLKLKVAVG 71 (254)
T ss_pred HHHHHHHHHhChhhhhhcccCCCCcccHHHHHHHHH---HHHccchhhHHhhCceeeEEec
Confidence 37899999999999999766664333455542 33 33333 4568999999998876
No 205
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=34.29 E-value=62 Score=33.65 Aligned_cols=58 Identities=22% Similarity=0.154 Sum_probs=36.8
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCC-CCCCCCceeeccccchHHHHHHHHHHcCcEEEEec
Q 006249 57 MWPDLIQKSKDGGLDVIETYVFWN-LHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (654)
Q Consensus 57 ~W~~~l~k~Ka~G~N~V~tyv~Wn-~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~ 115 (654)
..++.++.++++|+++|.+.-... ..+..+-.++. -...|.++.++|+++|+.+.+.+
T Consensus 95 ~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 95 IMEKAIQLARDLGIRTIQLAGYDVYYEEHDEETRRR-FREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHhCCCEEEecCcccccCcCCHHHHHH-HHHHHHHHHHHHHHcCCEEEEee
Confidence 467789999999999997631100 00000001110 01467788999999999999985
No 206
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=34.01 E-value=54 Score=33.49 Aligned_cols=59 Identities=10% Similarity=-0.107 Sum_probs=39.0
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCCCC-CCCceeeccccchHHHHHHHHHHcCcEEEEec
Q 006249 56 EMWPDLIQKSKDGGLDVIETYVFWNLHE-PVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (654)
Q Consensus 56 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hE-p~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~ 115 (654)
+.+++.++.++++|+.+|.+-..+..-+ +.+-.+ -.-...+.++.++|++.|+.+.+.+
T Consensus 84 ~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~-~~~~~~l~~l~~~A~~~gi~l~lE~ 143 (254)
T TIGR03234 84 EGVALAIAYARALGCPQVNCLAGKRPAGVSPEEAR-ATLVENLRYAADALDRIGLTLLIEP 143 (254)
T ss_pred HHHHHHHHHHHHhCCCEEEECcCCCCCCCCHHHHH-HHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 5677889999999999998633221000 011001 0112468888999999999999987
No 207
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=33.87 E-value=1.1e+02 Score=28.96 Aligned_cols=90 Identities=11% Similarity=0.177 Sum_probs=47.1
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeecc---ccchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCc
Q 006249 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFE---GRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPL 130 (654)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~---g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~ 130 (654)
.+.+.+..++.|+++|+..+-+|.....+ ...|.-. |..|=..-++.|+++|+. . |-|-
T Consensus 36 ~k~Lt~~e~~~i~~~Gl~i~pIyq~~~~~---~~~~~~~~~~G~~dA~~A~~~A~~lG~p----~-----------gt~I 97 (136)
T PF08924_consen 36 QKNLTAGEVQDIRAAGLRIFPIYQGGGRE---TSDFTYGYAQGVADARDAVAAARALGFP----A-----------GTPI 97 (136)
T ss_dssp --B--HHHHHHHHHTT-EEEEEE-----------S-B--HHHHHHHHHHHHHHHHHTT------S-----------S-EE
T ss_pred cCCCCHHHHHHHHHCCCEEEEEEeccccc---ccccccHHHHHHHHHHHHHHHHHHcCCC----C-----------CCEE
Confidence 46889999999999999999998877221 1222222 667889999999999983 2 3344
Q ss_pred ccccCCCeeeecCChhHHHHHHHHHHHHHHHHHhc
Q 006249 131 WLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQE 165 (654)
Q Consensus 131 WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~ 165 (654)
++--+-+ ..+..+...+..|++.+.+.|...
T Consensus 98 YfavD~d----~~~~~~~~~i~~Y~~g~~~~l~~~ 128 (136)
T PF08924_consen 98 YFAVDYD----ATDAECDSAILPYFRGWNSALGAS 128 (136)
T ss_dssp EEE--TS-----B-HH-------HHHHHHHHHGGG
T ss_pred EEEeecC----CCchhhhhHHHHHHHHHHHHHhhC
Confidence 4432112 256778888888999988888854
No 208
>PLN02561 triosephosphate isomerase
Probab=33.75 E-value=82 Score=33.08 Aligned_cols=50 Identities=12% Similarity=-0.041 Sum_probs=39.0
Q ss_pred HHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEEecC
Q 006249 61 LIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (654)
Q Consensus 61 ~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~G 116 (654)
...++|++|++.|-+ +|-|.+. .|.=+ +..+.+=++.|.++||.+|++.|
T Consensus 80 S~~mL~d~G~~~vii----GHSERR~-~f~Et-d~~v~~Kv~~al~~gl~pIvCvG 129 (253)
T PLN02561 80 SAEMLVNLGIPWVIL----GHSERRA-LLGES-NEFVGDKVAYALSQGLKVIACVG 129 (253)
T ss_pred CHHHHHHcCCCEEEE----CcccccC-ccCCC-hHHHHHHHHHHHHCcCEEEEEcC
Confidence 456899999999998 6555554 44323 56778888999999999999987
No 209
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=33.28 E-value=79 Score=28.77 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=26.3
Q ss_pred cceEEEEECCEEEEEEEcCcCCceEEEecccccCCCccEEEEEEe
Q 006249 508 GHALHAFINGKLVGSGYGSSSNAKVTVDFPIALAPGKNTFDLLSL 552 (654)
Q Consensus 508 ~d~~~VfVNG~~vGt~~g~~~~~~~~~~~~v~Lk~G~N~L~ILv~ 552 (654)
.-...|||||+++|+.... .|..- .+.+|+++|+...+
T Consensus 40 ~~~~~v~vdg~~ig~l~~g----~y~~~---~v~pG~h~i~~~~~ 77 (117)
T PF11008_consen 40 AVKPDVYVDGELIGELKNG----GYFYV---EVPPGKHTISAKSE 77 (117)
T ss_pred cccceEEECCEEEEEeCCC----eEEEE---EECCCcEEEEEecC
Confidence 3445689999999996643 34332 37889988887444
No 210
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=32.80 E-value=44 Score=36.06 Aligned_cols=115 Identities=16% Similarity=0.300 Sum_probs=63.0
Q ss_pred CEEEEcccCCCCCCC-CceeeccccchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccccCCCeeeecCChhHHH
Q 006249 71 DVIETYVFWNLHEPV-RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKA 149 (654)
Q Consensus 71 N~V~tyv~Wn~hEp~-~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~d~~y~~ 149 (654)
+.|.++|.|++|=-. | =...|+.|+++|..|+= -.|. ||+.| ..|+.. +.-+..+..
T Consensus 27 ~yiD~fvywsh~~i~iP----------~~~widaAHrnGV~vLG---Tiif-e~~~~--~~~~~~---ll~~~~~g~--- 84 (311)
T PF03644_consen 27 QYIDIFVYWSHGLITIP----------PAGWIDAAHRNGVKVLG---TIIF-EWGGG--AEWCEE---LLEKDEDGS--- 84 (311)
T ss_dssp GG-SEEEET-TBSSE-------------HHHHHHHHHTT--EEE---EEEE-EEE----HHHHHH---HT---TTS----
T ss_pred cceeeEeecccccccCC----------CchhHHHHHhcCceEEE---EEEe-cCCch--HHHHHH---HHcCCcccc---
Confidence 357888999965422 2 12589999999999952 2343 77643 356543 111122222
Q ss_pred HHHHHHHHHHHHHHhcccccccCCceEeecccccccccccccCcccHHHHHHHHHHHhh-cCCCcceEE
Q 006249 150 EMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSAYGAAGKSYIKWAAGMALS-LDTGVPWVM 217 (654)
Q Consensus 150 ~~~~~~~~l~~~i~~~~l~~~~gGpII~~QIENEyg~~~~~~g~~~~~y~~~l~~~~~~-~g~~vP~~~ 217 (654)
.++.++|+++.+-+++ .| .++-+|+..+... ..+.-..+++.|++.+++ -+..|-|+.
T Consensus 85 --~~~A~kLi~ia~~yGF----DG--w~iN~E~~~~~~~--~~~~l~~F~~~l~~~~~~~~~~~v~WYD 143 (311)
T PF03644_consen 85 --FPYADKLIEIAKYYGF----DG--WLINIETPLSGPE--DAENLIDFLKYLRKEAHENPGSEVIWYD 143 (311)
T ss_dssp ---HHHHHHHHHHHHHT------E--EEEEEEESSTTGG--GHHHHHHHHHHHHHHHHHT-T-EEEEES
T ss_pred --cHHHHHHHHHHHHcCC----Cc--eEEEecccCCchh--HHHHHHHHHHHHHHHhhcCCCcEEEEee
Confidence 3457788888885554 23 7888888876410 112456788889998887 234466663
No 211
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=32.53 E-value=82 Score=38.18 Aligned_cols=65 Identities=20% Similarity=0.293 Sum_probs=47.4
Q ss_pred cccHHHHHHHHHHCCCC--EEEEcccCCCCCCCCceeecccc----chHHHHHHHHHHcCcEEEEecCcccccccC
Q 006249 55 PEMWPDLIQKSKDGGLD--VIETYVFWNLHEPVRNQYNFEGR----YDLVKFVKLVAEAGLYAHLRIGPYVCAEWN 124 (654)
Q Consensus 55 ~~~W~~~l~k~Ka~G~N--~V~tyv~Wn~hEp~~G~~dF~g~----~dl~~fl~la~~~GL~Vilr~GPyi~aEw~ 124 (654)
-+.-++..+.++++|+. ++-+-+.|. ++.=||+=+ .++..|++-.++.|+++++.+=|+|...-.
T Consensus 310 ls~~~dvv~~~~~agiPld~~~~DiDyM-----d~ykDFTvd~~~fp~~~~fv~~Lh~~G~kyvliidP~is~~~~ 380 (805)
T KOG1065|consen 310 LSVVRDVVENYRAAGIPLDVIVIDIDYM-----DGYKDFTVDKVWFPDLKDFVDDLHARGFKYVLIIDPFISTNSS 380 (805)
T ss_pred HHHHHHHHHHHHHcCCCcceeeeehhhh-----hcccceeeccccCcchHHHHHHHHhCCCeEEEEeCCccccCcc
Confidence 34458899999999998 666666664 333344422 368999999999999999998888854433
No 212
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=32.50 E-value=2.3e+02 Score=31.95 Aligned_cols=84 Identities=17% Similarity=0.140 Sum_probs=58.5
Q ss_pred CcEEECCEEeEEEEEEeeCCCCC---cccHHHHHHHHHHCCCCE--E--EEcccCCCCCCCCceeeccccchHHHHHHHH
Q 006249 32 RAVVIGGKRRVLISGSIHYPRST---PEMWPDLIQKSKDGGLDV--I--ETYVFWNLHEPVRNQYNFEGRYDLVKFVKLV 104 (654)
Q Consensus 32 ~~~~idG~p~~~~sG~iHy~R~~---~~~W~~~l~k~Ka~G~N~--V--~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la 104 (654)
++..+++.-|+++.+.-+-++.+ ++.-+.-.+.+++.|++. | .....-|+-.|.+..++++ ..-+.+-|+.|
T Consensus 149 ~a~~~g~~afqiF~~npr~w~~~~~~~~~~~~f~~~~~~~gi~~~~i~~HapYlINLASpd~e~rekS-v~~~~~eL~rA 227 (413)
T PTZ00372 149 NAYNIAGQAFALFLKNQRTWNSPPLSDETIDKFKENCKKYNYDPKFILPHGSYLINLANPDKEKREKS-YDAFLDDLQRC 227 (413)
T ss_pred HHHHcCCCEEEEEcCCCccCCCCCCCHHHHHHHHHHHHHcCCCcceEEeecCceecCCCCCHHHHHHH-HHHHHHHHHHH
Confidence 45667788899998877766543 344455566788888762 3 2222267777777777776 44677889999
Q ss_pred HHcCcE-EEEecC
Q 006249 105 AEAGLY-AHLRIG 116 (654)
Q Consensus 105 ~~~GL~-Vilr~G 116 (654)
.+.|.. |++.||
T Consensus 228 ~~LGa~~VV~HPG 240 (413)
T PTZ00372 228 EQLGIKLYNFHPG 240 (413)
T ss_pred HHcCCCEEEECCC
Confidence 999998 567787
No 213
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=32.34 E-value=67 Score=36.01 Aligned_cols=63 Identities=24% Similarity=0.343 Sum_probs=46.5
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeecc----ccchHHHHHHHHHHcCcEE-EEecCcccccccCCCC
Q 006249 53 STPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFE----GRYDLVKFVKLVAEAGLYA-HLRIGPYVCAEWNFGG 127 (654)
Q Consensus 53 ~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~----g~~dl~~fl~la~~~GL~V-ilr~GPyi~aEw~~GG 127 (654)
...+.-+..|+.+|+.|+|+|-++..=. -|..|.+ -..|-+..++++.+.|..+ +|-+| ||
T Consensus 190 ~~~~~~~~lLd~ak~l~lnvvGvsfHvG-----Sgc~d~~~y~~Ai~dAr~vfd~g~e~Gf~m~~LdiG---------GG 255 (448)
T KOG0622|consen 190 CSLDNCRHLLDMAKELELNVVGVSFHVG-----SGCTDLQAYRDAISDARNVFDMGAELGFEMDILDIG---------GG 255 (448)
T ss_pred CCHHHHHHHHHHHHHcCceEEEEEEEec-----CCCCCHHHHHHHHHHHHHHHHHHHhcCceEEEeecC---------CC
Confidence 3556778899999999999999965433 2334433 1346777888999999985 78886 88
Q ss_pred CC
Q 006249 128 FP 129 (654)
Q Consensus 128 ~P 129 (654)
+|
T Consensus 256 f~ 257 (448)
T KOG0622|consen 256 FP 257 (448)
T ss_pred CC
Confidence 87
No 214
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=32.12 E-value=2.4e+02 Score=25.18 Aligned_cols=73 Identities=19% Similarity=0.239 Sum_probs=43.7
Q ss_pred cceEEEEEEeccCCCcccccCCCceEEEEccccc--eEEEEECC---EEEEEEEcCcC--CceE-EEecccccCCCccEE
Q 006249 476 SDYLWYSLSTNIKADEPLLEDGSKTVLHVQSLGH--ALHAFING---KLVGSGYGSSS--NAKV-TVDFPIALAPGKNTF 547 (654)
Q Consensus 476 ~GyvWYrT~i~~~~~~~~~~~g~~~~L~l~~~~d--~~~VfVNG---~~vGt~~g~~~--~~~~-~~~~~v~Lk~G~N~L 547 (654)
-+++=|.. |+++... .....+++.+... ...++||| +.+++..-... -..| ++..++.|++|+|+|
T Consensus 31 G~~~~~~~-Vd~~~~g-----~y~~~~~~a~~~~~~~~~l~id~~~g~~~~~~~~~~tg~w~~~~~~~~~v~l~~G~h~i 104 (125)
T PF03422_consen 31 GDWIEYNN-VDVPEAG-----TYTLTIRYANGGGGGTIELRIDGPDGTLIGTVSLPPTGGWDTWQTVSVSVKLPAGKHTI 104 (125)
T ss_dssp TTEEEEEE-EEESSSE-----EEEEEEEEEESSSSEEEEEEETTTTSEEEEEEEEE-ESSTTEEEEEEEEEEEESEEEEE
T ss_pred CCEEEEEE-EeeCCCc-----eEEEEEEEECCCCCcEEEEEECCCCCcEEEEEEEcCCCCccccEEEEEEEeeCCCeeEE
Confidence 45666653 6665432 1134566666543 78999999 89887753110 1122 233457788899988
Q ss_pred EEEEeec
Q 006249 548 DLLSLTV 554 (654)
Q Consensus 548 ~ILv~n~ 554 (654)
.|....-
T Consensus 105 ~l~~~~~ 111 (125)
T PF03422_consen 105 YLVFNGG 111 (125)
T ss_dssp EEEESSS
T ss_pred EEEEECC
Confidence 8877654
No 215
>PTZ00333 triosephosphate isomerase; Provisional
Probab=31.78 E-value=99 Score=32.49 Aligned_cols=49 Identities=27% Similarity=0.205 Sum_probs=38.9
Q ss_pred HHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEEecC
Q 006249 62 IQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (654)
Q Consensus 62 l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~G 116 (654)
-.++|++|++.|-+ +|-|.+ -.|. +.+..+.+=++.|.++||.+|++.|
T Consensus 82 ~~mL~d~G~~~vii----GHSERR-~~f~-Etd~~I~~Kv~~al~~gl~pIlCvG 130 (255)
T PTZ00333 82 AEMLKDLGINWTIL----GHSERR-QYFG-ETNEIVAQKVKNALENGLKVILCIG 130 (255)
T ss_pred HHHHHHcCCCEEEE----Cccccc-CcCC-CCcHHHHHHHHHHHHCCCEEEEEcC
Confidence 46899999999998 655544 3443 3356888999999999999999987
No 216
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=31.15 E-value=67 Score=33.38 Aligned_cols=40 Identities=13% Similarity=0.233 Sum_probs=31.9
Q ss_pred EECCEEeEEEEEEeeCCCC-CcccHHHHHHHHHHCCCCEEE
Q 006249 35 VIGGKRRVLISGSIHYPRS-TPEMWPDLIQKSKDGGLDVIE 74 (654)
Q Consensus 35 ~idG~p~~~~sG~iHy~R~-~~~~W~~~l~k~Ka~G~N~V~ 74 (654)
.+.|+++..++|..|+... ...+-+--++.||++|+..|=
T Consensus 47 ~l~g~~V~~l~Gr~H~yeg~~~~~v~~~i~al~~lGv~~ii 87 (237)
T TIGR01698 47 RIGDGPVLVLGGRTHAYEGGDARAVVHPVRTARATGAETLI 87 (237)
T ss_pred EECCEEEEEEcCCCcccCCCcHHHhHHHHHHHHHcCCCEEE
Confidence 5689999999999997654 444447789999999997664
No 217
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=31.05 E-value=1.5e+02 Score=30.98 Aligned_cols=91 Identities=24% Similarity=0.346 Sum_probs=56.8
Q ss_pred HHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCc--EEEEecCccc-------ccccCCCCCCc
Q 006249 60 DLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGL--YAHLRIGPYV-------CAEWNFGGFPL 130 (654)
Q Consensus 60 ~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL--~Vilr~GPyi-------~aEw~~GG~P~ 130 (654)
++|++=.++|.+.+-|-.+.+ .+ .+.+|++.|++.|+ .|++.+-|-. .+++-.-++|.
T Consensus 151 ~~L~~Ki~aGA~f~iTQ~~fd----------~~---~~~~~~~~~~~~gi~vPIi~GI~p~~s~~~l~~~~~~~Gv~vP~ 217 (274)
T cd00537 151 KRLKRKVDAGADFIITQLFFD----------ND---AFLRFVDRCRAAGITVPIIPGIMPLTSYKQAKRFAKLCGVEIPD 217 (274)
T ss_pred HHHHHHHHCCCCEEeeccccc----------HH---HHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHhhCCCCCH
Confidence 445555567999999944433 33 78899999999984 4566655532 24555667899
Q ss_pred ccccCCCeeeecCChhHHHHHHHHHHHHHHHHHh
Q 006249 131 WLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQ 164 (654)
Q Consensus 131 WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~ 164 (654)
|+.+.=. ....+....+++-.++..++++.+.+
T Consensus 218 ~~~~~l~-~~~~~~~~~~~~g~~~~~~l~~~l~~ 250 (274)
T cd00537 218 WLLERLE-KLKDDAEAVRAEGIEIAAELCDELLE 250 (274)
T ss_pred HHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9985110 01122334455666677777777773
No 218
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=30.99 E-value=1.1e+02 Score=32.21 Aligned_cols=49 Identities=18% Similarity=0.219 Sum_probs=40.7
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEE
Q 006249 53 STPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHL 113 (654)
Q Consensus 53 ~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vil 113 (654)
.|.+.=++.++++.+.|+..|+++++.+. + ..+...++.|+++|+.|..
T Consensus 88 ~p~~~~~~di~~~~~~g~~~iri~~~~~~---------~---~~~~~~i~~ak~~G~~v~~ 136 (275)
T cd07937 88 YPDDVVELFVEKAAKNGIDIFRIFDALND---------V---RNLEVAIKAVKKAGKHVEG 136 (275)
T ss_pred CCcHHHHHHHHHHHHcCCCEEEEeecCCh---------H---HHHHHHHHHHHHCCCeEEE
Confidence 45556788999999999999999887664 2 3788999999999998875
No 219
>PRK14567 triosephosphate isomerase; Provisional
Probab=30.72 E-value=1e+02 Score=32.36 Aligned_cols=50 Identities=18% Similarity=0.192 Sum_probs=38.4
Q ss_pred HHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEEecC
Q 006249 61 LIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (654)
Q Consensus 61 ~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~G 116 (654)
.-.++|++|++.|-+ .|-|.+. .|. +-+..+.+=++.|.++||.+|++.|
T Consensus 77 S~~mLkd~G~~yvii----GHSERR~-~f~-Etd~~v~~Kv~~al~~gl~pI~CiG 126 (253)
T PRK14567 77 SARMLEDIGCDYLLI----GHSERRS-LFA-ESDEDVFKKLNKIIDTTITPVVCIG 126 (253)
T ss_pred CHHHHHHcCCCEEEE----CcccccC-ccC-CCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 345899999999998 6555543 343 3345677888999999999999987
No 220
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=30.20 E-value=6.8e+02 Score=27.42 Aligned_cols=57 Identities=19% Similarity=0.237 Sum_probs=37.5
Q ss_pred HHHHHHHHHcCcEEEEecCcccccccCCCCCCcccccCCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEe
Q 006249 98 VKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIIL 177 (654)
Q Consensus 98 ~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~ 177 (654)
..++..|+++|++|++- |++|. +.+ .||. .-++|++.+++.++++++ =+
T Consensus 67 ~~~~~~A~~~~v~v~~~-----------~~~~~-----~~l----~~~~---~R~~fi~siv~~~~~~gf--------DG 115 (358)
T cd02875 67 DELLCYAHSKGVRLVLK-----------GDVPL-----EQI----SNPT---YRTQWIQQKVELAKSQFM--------DG 115 (358)
T ss_pred HHHHHHHHHcCCEEEEE-----------CccCH-----HHc----CCHH---HHHHHHHHHHHHHHHhCC--------Ce
Confidence 48899999999999863 23331 111 2443 345688899999997654 25
Q ss_pred eccccccc
Q 006249 178 SQIENEYG 185 (654)
Q Consensus 178 ~QIENEyg 185 (654)
+.|+=||-
T Consensus 116 IdIDwE~p 123 (358)
T cd02875 116 INIDIEQP 123 (358)
T ss_pred EEEcccCC
Confidence 66676764
No 221
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=30.11 E-value=52 Score=35.35 Aligned_cols=62 Identities=18% Similarity=0.257 Sum_probs=42.0
Q ss_pred CcccHHHHHHHHHHCCCCEEEEccc----CCCCCC------CCceee------ccccchHHHHHHHHHHcCcEEEEec
Q 006249 54 TPEMWPDLIQKSKDGGLDVIETYVF----WNLHEP------VRNQYN------FEGRYDLVKFVKLVAEAGLYAHLRI 115 (654)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~N~V~tyv~----Wn~hEp------~~G~~d------F~g~~dl~~fl~la~~~GL~Vilr~ 115 (654)
+.+.-.+.|+.|-..++|++..++- |.+.-+ ..|.+. +=-..|+..+++.|++.||.||..+
T Consensus 16 ~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~yA~~~gI~VIPei 93 (351)
T PF00728_consen 16 SVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVAYAKERGIEVIPEI 93 (351)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHHHHHHTT-EEEEEE
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCHHHHHHHHHHHHHcCCceeeec
Confidence 7788899999999999999998874 332211 123221 1112499999999999999998764
No 222
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=29.76 E-value=1.6e+02 Score=33.20 Aligned_cols=104 Identities=17% Similarity=0.230 Sum_probs=61.1
Q ss_pred CcccHHHHHHHHHHCCCCEEEEc-ccCCCCCCC----Cceeec-----ccc-----chHHHHHHHHH-HcCcEEEEecCc
Q 006249 54 TPEMWPDLIQKSKDGGLDVIETY-VFWNLHEPV----RNQYNF-----EGR-----YDLVKFVKLVA-EAGLYAHLRIGP 117 (654)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~N~V~ty-v~Wn~hEp~----~G~~dF-----~g~-----~dl~~fl~la~-~~GL~Vilr~GP 117 (654)
+-+.|++.|+.++++|.|+|..- +----...+ ..|..| ... .++.++++.++ ++||.++.-.=
T Consensus 20 ~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~DvV- 98 (423)
T PF14701_consen 20 PFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTDVV- 98 (423)
T ss_pred CHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEEEe-
Confidence 55689999999999999999751 111100001 122222 122 49999999985 89999876541
Q ss_pred ccccccCCCCC-CcccccCCCeeeecCChhHHHHH---HHHHHHHHHHHH
Q 006249 118 YVCAEWNFGGF-PLWLHFIPGIQFRTDNEPFKAEM---QRFTAKIVDMMK 163 (654)
Q Consensus 118 yi~aEw~~GG~-P~WL~~~p~~~~R~~d~~y~~~~---~~~~~~l~~~i~ 163 (654)
|+.-.. =.||.++|+.-.=..+.++|+.. ++-+-++-..|.
T Consensus 99 -----~NHtA~nS~Wl~eHPEagYN~~nsPHL~pA~eLD~aL~~fS~~l~ 143 (423)
T PF14701_consen 99 -----LNHTANNSPWLREHPEAGYNLENSPHLRPAYELDRALLEFSKDLE 143 (423)
T ss_pred -----eccCcCCChHHHhCcccccCCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 333222 36999999864444455555443 333344444444
No 223
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=29.71 E-value=79 Score=32.90 Aligned_cols=48 Identities=27% Similarity=0.473 Sum_probs=36.3
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEE-EecCccccc
Q 006249 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAH-LRIGPYVCA 121 (654)
Q Consensus 56 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vi-lr~GPyi~a 121 (654)
+.-.+.++++|+.|+ -|+.+| +|.+ ..|+.|++.|-..| |-.|||..+
T Consensus 113 ~~l~~~i~~L~~~gI-rVSLFi-----dP~~------------~qi~~A~~~GAd~VELhTG~yA~a 161 (239)
T PRK05265 113 DKLKPAIARLKDAGI-RVSLFI-----DPDP------------EQIEAAAEVGADRIELHTGPYADA 161 (239)
T ss_pred HHHHHHHHHHHHCCC-EEEEEe-----CCCH------------HHHHHHHHhCcCEEEEechhhhcC
Confidence 445667888999998 455544 6666 67889999998865 999999865
No 224
>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]
Probab=29.55 E-value=1.1e+02 Score=33.39 Aligned_cols=117 Identities=22% Similarity=0.381 Sum_probs=72.8
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEE-EecCcccccccCCCCCCccc
Q 006249 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAH-LRIGPYVCAEWNFGGFPLWL 132 (654)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vi-lr~GPyi~aEw~~GG~P~WL 132 (654)
....|+.--.-.+.+|+.+|++|-+|+.-+.. + |++.||.-.+..--+.| +-. .||-=..|=
T Consensus 131 SnPTW~nH~~if~~aGf~tv~~Y~yWd~~~k~---~------d~e~~Lsdl~~APe~si~iLh---aCAhNPTGm----- 193 (410)
T KOG1412|consen 131 SNPTWENHHAIFEKAGFTTVATYPYWDAENKC---V------DLEGFLSDLESAPEGSIIILH---ACAHNPTGM----- 193 (410)
T ss_pred cCCchhHHHHHHHHcCCceeeeeeeecCCCce---e------cHHHHHHHHhhCCCCcEEeee---ccccCCCCC-----
Confidence 44569999999999999999999999965543 2 67788888877666533 222 265433322
Q ss_pred ccCCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCce--EeecccccccccccccCcccHHHHHHHHHHHhhcC
Q 006249 133 HFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPI--ILSQIENEYGNIDSAYGAAGKSYIKWAAGMALSLD 210 (654)
Q Consensus 133 ~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpI--I~~QIENEyg~~~~~~g~~~~~y~~~l~~~~~~~g 210 (654)
|| .+.=+..|++.|++..++ |. |+.| |. +.|+.++ =.|..+.+.+.|
T Consensus 194 -----------DP-----T~EQW~qia~vik~k~lf-----~fFDiAYQ-----Gf---ASGD~~~--DawAiR~fV~~g 242 (410)
T KOG1412|consen 194 -----------DP-----TREQWKQIADVIKSKNLF-----PFFDIAYQ-----GF---ASGDLDA--DAWAIRYFVEQG 242 (410)
T ss_pred -----------CC-----CHHHHHHHHHHHHhcCce-----eeeehhhc-----cc---ccCCccc--cHHHHHHHHhcC
Confidence 11 233356778888866554 22 2222 21 1232222 357888888888
Q ss_pred CCcceEEccC
Q 006249 211 TGVPWVMCQQ 220 (654)
Q Consensus 211 ~~vP~~~~~~ 220 (654)
.+++.|+.
T Consensus 243 --~e~fv~QS 250 (410)
T KOG1412|consen 243 --FELFVCQS 250 (410)
T ss_pred --CeEEEEhh
Confidence 46777764
No 225
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.43 E-value=1e+02 Score=23.98 Aligned_cols=55 Identities=16% Similarity=0.297 Sum_probs=39.3
Q ss_pred cccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEE
Q 006249 55 PEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYA 111 (654)
Q Consensus 55 ~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~V 111 (654)
|-.-.+.+.-+.+.|+|.+.++. +..++.....+-|.-+ +.++.++..+++|..|
T Consensus 10 pG~L~~i~~~l~~~~~nI~~i~~-~~~~~~~~~~v~~~ve-~~~~~~~~L~~~G~~v 64 (65)
T cd04882 10 PGGLHEILQILSEEGINIEYMYA-FVEKKGGKALLIFRTE-DIEKAIEVLQERGVEL 64 (65)
T ss_pred CcHHHHHHHHHHHCCCChhheEE-EccCCCCeEEEEEEeC-CHHHHHHHHHHCCceE
Confidence 44566788889999999988875 3333234455555433 4889999999999765
No 226
>PRK09267 flavodoxin FldA; Validated
Probab=29.38 E-value=3.2e+02 Score=26.11 Aligned_cols=74 Identities=9% Similarity=0.052 Sum_probs=48.2
Q ss_pred ECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEE
Q 006249 36 IGGKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAH 112 (654)
Q Consensus 36 idG~p~~~~sG~iHy~R~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vi 112 (654)
++.-..++++...|....++..|.+-+.+++...++-..+.+|= ......-.-.| ..-+..+-+++.+.|..++
T Consensus 44 l~~~d~vi~g~pt~~~G~~~~~~~~fl~~~~~~~l~~k~vaifg-~g~~~~~~~~~--~~~~~~l~~~l~~~g~~~v 117 (169)
T PRK09267 44 FEAYDLLILGIPTWGYGELQCDWDDFLPELEEIDFSGKKVALFG-LGDQEDYAEYF--CDAMGTLYDIVEPRGATIV 117 (169)
T ss_pred HhhCCEEEEEecCcCCCCCCHHHHHHHHHHhcCCCCCCEEEEEe-cCCCCcchHHH--HHHHHHHHHHHHHCCCEEE
Confidence 44556688999999878788889988888877777766666663 22111100112 2235667778889997654
No 227
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=29.09 E-value=1e+02 Score=31.89 Aligned_cols=46 Identities=22% Similarity=0.294 Sum_probs=32.9
Q ss_pred HHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEEecC
Q 006249 60 DLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (654)
Q Consensus 60 ~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~G 116 (654)
+-+++++++|.+.|-+.-- ..|.. .++.++++.|+++||.+++-..
T Consensus 92 ~~i~~~~~~Gadgvii~dl--p~e~~---------~~~~~~~~~~~~~Gl~~~~~v~ 137 (244)
T PRK13125 92 NFLNMARDVGADGVLFPDL--LIDYP---------DDLEKYVEIIKNKGLKPVFFTS 137 (244)
T ss_pred HHHHHHHHcCCCEEEECCC--CCCcH---------HHHHHHHHHHHHcCCCEEEEEC
Confidence 3477889999999998200 00211 1678999999999999887764
No 228
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=28.85 E-value=2.5e+02 Score=30.09 Aligned_cols=88 Identities=17% Similarity=0.127 Sum_probs=53.2
Q ss_pred chHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccccCCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCc
Q 006249 95 YDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGP 174 (654)
Q Consensus 95 ~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~l~~~~gGp 174 (654)
..+.+.|+.|++.|++|+|-+|- |. |. .. ..++ +..+++.+.|.+.++++.+
T Consensus 60 ~~~~~~i~~~q~~G~KVllSiGG-----~~-~~--------~~----~~~~---~~~~~fa~sl~~~~~~~g~------- 111 (312)
T cd02871 60 AEFKADIKALQAKGKKVLISIGG-----AN-GH--------VD----LNHT---AQEDNFVDSIVAIIKEYGF------- 111 (312)
T ss_pred HHHHHHHHHHHHCCCEEEEEEeC-----CC-Cc--------cc----cCCH---HHHHHHHHHHHHHHHHhCC-------
Confidence 35788899999999999998862 11 10 00 1222 3456778888888886543
Q ss_pred eEeecccccccccccccCcccHHHHHHHHHHHhhcCC
Q 006249 175 IILSQIENEYGNIDSAYGAAGKSYIKWAAGMALSLDT 211 (654)
Q Consensus 175 II~~QIENEyg~~~~~~g~~~~~y~~~l~~~~~~~g~ 211 (654)
=++.|+=|+......-......|.+.|+++-.+.+-
T Consensus 112 -DGiDiD~E~~~~~~~~~~~~~~~~~~lk~lr~~~~~ 147 (312)
T cd02871 112 -DGLDIDLESGSNPLNATPVITNLISALKQLKDHYGP 147 (312)
T ss_pred -CeEEEecccCCccCCcHHHHHHHHHHHHHHHHHcCC
Confidence 377888888652100001224566666666555543
No 229
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=28.36 E-value=1.3e+02 Score=36.11 Aligned_cols=62 Identities=6% Similarity=0.097 Sum_probs=43.8
Q ss_pred CCCcccHHHHHHHHHHCCCCEEEEcccCCC---CCCCCce---eeccc--cchHHHHHHHHHHcCcEEEE
Q 006249 52 RSTPEMWPDLIQKSKDGGLDVIETYVFWNL---HEPVRNQ---YNFEG--RYDLVKFVKLVAEAGLYAHL 113 (654)
Q Consensus 52 R~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~---hEp~~G~---~dF~g--~~dl~~fl~la~~~GL~Vil 113 (654)
.+.++.-++.|+-+|+.|+++|+.--.-.. ..+-|+. .-|+. .......+.+.+++|+.+.+
T Consensus 68 ~Vspe~Fe~qL~~Lk~nGY~~ISl~el~~~~~g~~~LP~K~VaLTFDDGy~s~yt~A~PILkkygvpATf 137 (671)
T PRK14582 68 SVRTSALREQFAWLRENGYQPVSVAQILEAHRGGKPLPEKAVLLTFDDGYSSFYTRVFPILQAFQWPAVW 137 (671)
T ss_pred ccCHHHHHHHHHHHHHCcCEEccHHHHHHHHhcCCCCCCCeEEEEEEcCCCchHHHHHHHHHHcCCCEEE
Confidence 346778999999999999999998644322 2233443 24552 23567788999999998754
No 230
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=28.25 E-value=4.9e+02 Score=28.24 Aligned_cols=128 Identities=21% Similarity=0.301 Sum_probs=77.5
Q ss_pred CcccHHHHHHHHHHCC-CCEEEEcccCCCCCC-CCceeecc-ccchHHHHHHHHHHc-CcEEEEecCcccccccCCCCCC
Q 006249 54 TPEMWPDLIQKSKDGG-LDVIETYVFWNLHEP-VRNQYNFE-GRYDLVKFVKLVAEA-GLYAHLRIGPYVCAEWNFGGFP 129 (654)
Q Consensus 54 ~~~~W~~~l~k~Ka~G-~N~V~tyv~Wn~hEp-~~G~~dF~-g~~dl~~fl~la~~~-GL~Vilr~GPyi~aEw~~GG~P 129 (654)
..+.|.|.++++...| .+.|+. |+--| .||-=++. ...-+.++++.+++. .+-|++-.+|.+
T Consensus 107 ~~~~~~d~~~~~~~~~~ad~iel----NiScPnt~g~~~l~~~~e~l~~l~~~vk~~~~~Pv~vKl~P~~---------- 172 (310)
T COG0167 107 SEEAWADYARLLEEAGDADAIEL----NISCPNTPGGRALGQDPELLEKLLEAVKAATKVPVFVKLAPNI---------- 172 (310)
T ss_pred cHHHHHHHHHHHHhcCCCCEEEE----EccCCCCCChhhhccCHHHHHHHHHHHHhcccCceEEEeCCCH----------
Confidence 4778999999999999 899999 77777 46633333 222667777666543 344555554411
Q ss_pred cccccCCCeeeecCChhHHHHHHHHHHHHHHHHHhccc---cccc---CCc-eEeec----ccccccccccccCcccH-H
Q 006249 130 LWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKL---YASQ---GGP-IILSQ----IENEYGNIDSAYGAAGK-S 197 (654)
Q Consensus 130 ~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~l---~~~~---gGp-II~~Q----IENEyg~~~~~~g~~~~-~ 197 (654)
.. +..+++.+.+.++ ...| .++ |..-+ +.||.|.++ |+.-+ .
T Consensus 173 ---------------~d--------i~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLS---G~~ikp~ 226 (310)
T COG0167 173 ---------------TD--------IDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLS---GPPLKPI 226 (310)
T ss_pred ---------------HH--------HHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcC---cccchHH
Confidence 11 2334444443321 1111 122 22222 568898763 33222 3
Q ss_pred HHHHHHHHHhhcCCCcceEEccCC
Q 006249 198 YIKWAAGMALSLDTGVPWVMCQQS 221 (654)
Q Consensus 198 y~~~l~~~~~~~g~~vP~~~~~~~ 221 (654)
=++++++++++.+.++|++-+.|-
T Consensus 227 al~~v~~l~~~~~~~ipIIGvGGI 250 (310)
T COG0167 227 ALRVVAELYKRLGGDIPIIGVGGI 250 (310)
T ss_pred HHHHHHHHHHhcCCCCcEEEecCc
Confidence 378999999999999999977664
No 231
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=28.01 E-value=91 Score=36.77 Aligned_cols=54 Identities=19% Similarity=0.277 Sum_probs=45.1
Q ss_pred eeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEE
Q 006249 48 IHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHL 113 (654)
Q Consensus 48 iHy~R~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vil 113 (654)
+=|.|+|.+.-+..++++++.|++.|++....|.. +++...++.|+++|+.+..
T Consensus 89 vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~------------~~~~~ai~~ak~~G~~~~~ 142 (593)
T PRK14040 89 LGYRHYADDVVERFVERAVKNGMDVFRVFDAMNDP------------RNLETALKAVRKVGAHAQG 142 (593)
T ss_pred eccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH------------HHHHHHHHHHHHcCCeEEE
Confidence 45667788888889999999999999998776653 3788999999999998643
No 232
>PRK11114 cellulose synthase regulator protein; Provisional
Probab=27.88 E-value=2e+02 Score=35.03 Aligned_cols=47 Identities=15% Similarity=0.145 Sum_probs=33.4
Q ss_pred cceEEEEECCEEEEEEEcC----cCCceEEEecccccCCCccEEEEEEeec
Q 006249 508 GHALHAFINGKLVGSGYGS----SSNAKVTVDFPIALAPGKNTFDLLSLTV 554 (654)
Q Consensus 508 ~d~~~VfVNG~~vGt~~g~----~~~~~~~~~~~v~Lk~G~N~L~ILv~n~ 554 (654)
.....|+|||+++|+..=. ......+++.+..+..|.|+|++.....
T Consensus 114 ~S~L~V~lNg~~v~s~pL~~~~~~~~~~~~i~IP~~l~~g~N~L~~~~~~~ 164 (756)
T PRK11114 114 LSHLKVYLNGELMGTLPLDKEQLGKKVLAQLPIDPRFITDFNRLRLEFIGH 164 (756)
T ss_pred CCeEEEEECCEEeEEEecCcccCCCcceeEEecCHHHcCCCceEEEEEecC
Confidence 5689999999999987421 1123455665556778999999986643
No 233
>PF11261 IRF-2BP1_2: Interferon regulatory factor 2-binding protein zinc finger; InterPro: IPR022750 IRF-2BP1 and IRF-2BP2 are nuclear transcriptional repressor proteins and can inhibit both enhancer-activated and basal transcription. They both contain N-terminal zinc finger and C-terminal RING finger domains []. This entry represents the N-terminal zinc finger domain of IRF-2BP1 and IRF-2BP2.
Probab=27.57 E-value=38 Score=26.78 Aligned_cols=31 Identities=26% Similarity=0.576 Sum_probs=26.8
Q ss_pred ccCCCCCCC-CceeeccccchHHHHHHHHHHc
Q 006249 77 VFWNLHEPV-RNQYNFEGRYDLVKFVKLVAEA 107 (654)
Q Consensus 77 v~Wn~hEp~-~G~~dF~g~~dl~~fl~la~~~ 107 (654)
+.|.+.||. +|--||+|...++..|+.|+..
T Consensus 18 mi~df~EpVCRgCvNyEGaDrIe~vie~arq~ 49 (54)
T PF11261_consen 18 MIWDFSEPVCRGCVNYEGADRIELVIESARQL 49 (54)
T ss_pred HHhhccchhhhhhcCcccchhHHHHHHHHHHH
Confidence 347889997 8999999999999999999764
No 234
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=27.46 E-value=61 Score=33.69 Aligned_cols=57 Identities=12% Similarity=0.052 Sum_probs=38.4
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCCCCC---CCceeeccccchHHHHHHHHHHcCcEEEEecC
Q 006249 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEP---VRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (654)
Q Consensus 56 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp---~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~G 116 (654)
+.+++.++.++++|+++|.+ |..+.+ .+..+.- -...+.++.++|+++|+.+.+.+-
T Consensus 85 ~~~~~~i~~A~~lG~~~v~~---~~g~~~~~~~~~~~~~-~~~~l~~l~~~a~~~gi~l~lEn~ 144 (279)
T cd00019 85 ERLKDEIERCEELGIRLLVF---HPGSYLGQSKEEGLKR-VIEALNELIDKAETKGVVIALETM 144 (279)
T ss_pred HHHHHHHHHHHHcCCCEEEE---CCCCCCCCCHHHHHHH-HHHHHHHHHHhccCCCCEEEEeCC
Confidence 45788899999999998766 333322 1111110 124677888888899999999874
No 235
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=27.45 E-value=5.2e+02 Score=28.15 Aligned_cols=140 Identities=15% Similarity=0.204 Sum_probs=69.8
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCccc
Q 006249 53 STPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWL 132 (654)
Q Consensus 53 ~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL 132 (654)
...+...+--+.+...|+|.|.+ |-.--.+-.-.=+-...+.++-++.+..||+|.|-.- ..+--.-||++
T Consensus 54 ~~~~R~~~YARllASiGINgvvl----NNVNa~~~~Lt~~~l~~v~~lAdvfRpYGIkv~LSvn--FasP~~lggL~--- 124 (328)
T PF07488_consen 54 RDLTRYRDYARLLASIGINGVVL----NNVNANPKLLTPEYLDKVARLADVFRPYGIKVYLSVN--FASPIELGGLP--- 124 (328)
T ss_dssp S--HHHHHHHHHHHHTT--EEE-----S-SS--CGGGSTTTHHHHHHHHHHHHHTT-EEEEEE---TTHHHHTTS-S---
T ss_pred cchhHHHHHHHHHhhcCCceEEe----cccccChhhcCHHHHHHHHHHHHHHhhcCCEEEEEee--ccCCcccCCcC---
Confidence 34556778888999999999997 4333323111112234677788888999999987641 11222235543
Q ss_pred ccCCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccccccccCcccHHHHHHHHHHHhhcCCC
Q 006249 133 HFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSAYGAAGKSYIKWAAGMALSLDTG 212 (654)
Q Consensus 133 ~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QIENEyg~~~~~~g~~~~~y~~~l~~~~~~~g~~ 212 (654)
|.|| .-..|++|+++.++.|-+. .=.=||=++=.-=|.+.|.. .||-.-.+=.+-|++..+-+|=-
T Consensus 125 ---------TaDP-ld~~V~~WW~~k~~eIY~~--IPDfgGflVKAdSEGqPGP~--~YgRthAdGANmlA~Al~P~GG~ 190 (328)
T PF07488_consen 125 ---------TADP-LDPEVRQWWKDKADEIYSA--IPDFGGFLVKADSEGQPGPF--TYGRTHADGANMLARALKPHGGI 190 (328)
T ss_dssp ------------T-TSHHHHHHHHHHHHHHHHH---TT--EEEE--SBTTB--GG--GGT--HHHHHHHHHHHHGGGT-E
T ss_pred ---------cCCC-CCHHHHHHHHHHHHHHHHh--CCCccceEEEecCCCCCCCc--ccCCCchhhHHHHHHHhhccCCE
Confidence 2332 2356777777766665522 11336766666667777764 35633334456677777777644
Q ss_pred cce
Q 006249 213 VPW 215 (654)
Q Consensus 213 vP~ 215 (654)
|-|
T Consensus 191 V~w 193 (328)
T PF07488_consen 191 VIW 193 (328)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
No 236
>KOG3698 consensus Hyaluronoglucosaminidase [Posttranslational modification, protein turnover, chaperones]
Probab=27.45 E-value=1.2e+02 Score=35.26 Aligned_cols=74 Identities=30% Similarity=0.479 Sum_probs=52.4
Q ss_pred ECCEEeEEEEEEee--CCC-CCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCC---------ceeeccccchHHHHHHH
Q 006249 36 IGGKRRVLISGSIH--YPR-STPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVR---------NQYNFEGRYDLVKFVKL 103 (654)
Q Consensus 36 idG~p~~~~sG~iH--y~R-~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~---------G~~dF~g~~dl~~fl~l 103 (654)
.+|++ +.++|-+- |-| |++|+=++.+++++.+|++ ||.. -|+. --|+-+-..-|..+|+.
T Consensus 11 A~g~r-~fiCGVvEGFYGRPWt~EQRK~LFrrl~~~gl~---tYlY----APKDDyKHR~~WRElY~vEEa~~L~~Li~a 82 (891)
T KOG3698|consen 11 AVGNR-KFICGVVEGFYGRPWTPEQRKHLFRRLNQLGLT---TYLY----APKDDYKHRSLWRELYNVEEATYLRNLIEA 82 (891)
T ss_pred ccccc-eeEEEeeccccCCCCCHHHHHHHHHHHHhcccc---eeee----cccchhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34555 45677776 668 5999999999999999999 4432 1221 12444444578899999
Q ss_pred HHHcCcEEEEecCc
Q 006249 104 VAEAGLYAHLRIGP 117 (654)
Q Consensus 104 a~~~GL~Vilr~GP 117 (654)
|+++++..+-.+.|
T Consensus 83 Ake~~i~F~YAiSP 96 (891)
T KOG3698|consen 83 AKENNINFVYAISP 96 (891)
T ss_pred HHhcCceEEEEcCC
Confidence 99999998866643
No 237
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=27.18 E-value=6.7e+02 Score=25.40 Aligned_cols=128 Identities=18% Similarity=0.221 Sum_probs=70.8
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccc
Q 006249 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLH 133 (654)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~ 133 (654)
....+++.+++++++|+..|+..- .+.+..+ ..++..+.++++++||.+..-- |+. .. |+.
T Consensus 13 ~~~~l~~~l~~~~~~G~~gvEi~~--------~~~~~~~-~~~~~~l~~~l~~~gl~i~~~~-~~~-------~~--~~~ 73 (274)
T COG1082 13 GELPLEEILRKAAELGFDGVELSP--------GDLFPAD-YKELAELKELLADYGLEITSLA-PFS-------NN--LLS 73 (274)
T ss_pred CCCCHHHHHHHHHHhCCCeEecCC--------cccCCch-hhhHHHHHHHHHHcCcEEEeec-ccC-------CC--cCC
Confidence 455688999999999999999954 1112111 1138899999999999986532 111 10 222
Q ss_pred cCCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccccc----cccCcccHHHHHHHHHHHhhc
Q 006249 134 FIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNID----SAYGAAGKSYIKWAAGMALSL 209 (654)
Q Consensus 134 ~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QIENEyg~~~----~~~g~~~~~y~~~l~~~~~~~ 209 (654)
.+++.. ++..+.++++++..+ .+ |.+++.++.-.=.+... ....+.-.++++.|.+.+++.
T Consensus 74 --------~~~~~~-~~~~~~~~~~i~~a~--~l----g~~~vv~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~ 138 (274)
T COG1082 74 --------PDEEER-EEALEELKRAIELAK--EL----GAKVVVVHPGLGAGADDPDSPEEARERWAEALEELAEIAEEL 138 (274)
T ss_pred --------CchhhH-HHHHHHHHHHHHHHH--Hc----CCCeEEeecccCCcCCCCCCCcccHHHHHHHHHHHHHHHHHh
Confidence 233333 333333444555555 22 44555544322111100 000012456788888888888
Q ss_pred CCCcce
Q 006249 210 DTGVPW 215 (654)
Q Consensus 210 g~~vP~ 215 (654)
|+.+-+
T Consensus 139 ~i~l~~ 144 (274)
T COG1082 139 GIGLAL 144 (274)
T ss_pred CCceEE
Confidence 777643
No 238
>PRK06703 flavodoxin; Provisional
Probab=27.18 E-value=3.2e+02 Score=25.51 Aligned_cols=100 Identities=10% Similarity=0.027 Sum_probs=59.0
Q ss_pred ECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeecc---ccchHHHHHHHHHHcCcEEE
Q 006249 36 IGGKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFE---GRYDLVKFVKLVAEAGLYAH 112 (654)
Q Consensus 36 idG~p~~~~sG~iHy~R~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~---g~~dl~~fl~la~~~GL~Vi 112 (654)
+.....++++...+-.-.+|+.+.+-+..++..-++.....+|-. ++++ ...-.+.+-+..++.|..++
T Consensus 46 l~~~d~viigspt~~~g~~p~~~~~f~~~l~~~~l~~k~~~vfg~--------g~~~y~~~~~a~~~l~~~l~~~G~~~~ 117 (151)
T PRK06703 46 LLAYDGIILGSYTWGDGDLPYEAEDFHEDLENIDLSGKKVAVFGS--------GDTAYPLFCEAVTIFEERLVERGAELV 117 (151)
T ss_pred HhcCCcEEEEECCCCCCcCcHHHHHHHHHHhcCCCCCCEEEEEcc--------CCCChHHHHHHHHHHHHHHHHCCCEEc
Confidence 344455556554443344566677778877766555555555532 2221 12355667777899999887
Q ss_pred EecCcccccccCCCCCCcccccCCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 006249 113 LRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMK 163 (654)
Q Consensus 113 lr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~ 163 (654)
.++ +- +..-.++..-++.+++|.++|++.++
T Consensus 118 ~~~---~~-----------------~~~~p~~~~~~~~~~~~~~~~~~~~~ 148 (151)
T PRK06703 118 QEG---LK-----------------IELAPETDEDVEKCSNFAIAFAEKFA 148 (151)
T ss_pred ccC---eE-----------------EecCCCchhHHHHHHHHHHHHHHHHH
Confidence 764 00 11111234677888999999887766
No 239
>PRK04302 triosephosphate isomerase; Provisional
Probab=27.07 E-value=1.3e+02 Score=30.59 Aligned_cols=60 Identities=20% Similarity=0.133 Sum_probs=42.3
Q ss_pred eeCCCCCccc--HHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEEecCc
Q 006249 48 IHYPRSTPEM--WPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGP 117 (654)
Q Consensus 48 iHy~R~~~~~--W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GP 117 (654)
-|+....+.. =+.-++.++++|++.|-+ .+-|.. -.|. .+.++++.|+++||.+|+..|.
T Consensus 62 q~~~~~~~G~~tg~~~~~~l~~~G~~~vii----~~ser~---~~~~---e~~~~v~~a~~~Gl~~I~~v~~ 123 (223)
T PRK04302 62 QHVDPVEPGSHTGHILPEAVKDAGAVGTLI----NHSERR---LTLA---DIEAVVERAKKLGLESVVCVNN 123 (223)
T ss_pred ccCCCCCCCCchhhhHHHHHHHcCCCEEEE----eccccc---cCHH---HHHHHHHHHHHCCCeEEEEcCC
Confidence 5776543332 234588999999999987 333322 2344 5889999999999999997753
No 240
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=26.98 E-value=1.3e+02 Score=29.68 Aligned_cols=41 Identities=12% Similarity=0.120 Sum_probs=33.5
Q ss_pred HHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEEe
Q 006249 61 LIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLR 114 (654)
Q Consensus 61 ~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr 114 (654)
.++++.++|.+.|.+..... ...+.++++.|+++|+.+++.
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~-------------~~~~~~~i~~~~~~g~~~~~~ 108 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVAD-------------DATIKGAVKAAKKHGKEVQVD 108 (206)
T ss_pred HHHHHHHcCCCEEEEeccCC-------------HHHHHHHHHHHHHcCCEEEEE
Confidence 68899999999999854321 236789999999999999885
No 241
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=26.40 E-value=56 Score=26.84 Aligned_cols=12 Identities=33% Similarity=0.625 Sum_probs=11.0
Q ss_pred EEECCEEEEEEE
Q 006249 513 AFINGKLVGSGY 524 (654)
Q Consensus 513 VfVNG~~vGt~~ 524 (654)
|||||.++|.+.
T Consensus 1 VFlNG~~iG~~~ 12 (63)
T PF04566_consen 1 VFLNGVWIGIHS 12 (63)
T ss_dssp EEETTEEEEEES
T ss_pred CEECCEEEEEEc
Confidence 799999999876
No 242
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=26.37 E-value=4.2e+02 Score=25.83 Aligned_cols=49 Identities=16% Similarity=0.207 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhcccccccCCceEeecccccccccccccCcccHHHHHHHHHHHh
Q 006249 151 MQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSAYGAAGKSYIKWAAGMAL 207 (654)
Q Consensus 151 ~~~~~~~l~~~i~~~~l~~~~gGpII~~QIENEyg~~~~~~g~~~~~y~~~l~~~~~ 207 (654)
+.+-+.+++..++ ..+.++|.+ .||.|.-.-.+.+..+.|.+.|-.+-.
T Consensus 101 ~~~~i~~l~~~l~------~~~~~~viV--snEvG~g~vp~~~~~r~f~d~lG~lnq 149 (169)
T cd00544 101 IADEIDALLAAVR------NKPGTLILV--SNEVGLGVVPENALGRRFRDELGRLNQ 149 (169)
T ss_pred HHHHHHHHHHHHH------cCCCcEEEE--ECCcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 4445566666666 346688888 599987433345677888877655544
No 243
>PF00337 Gal-bind_lectin: Galactoside-binding lectin; InterPro: IPR001079 Galectins (also known as galaptins or S-lectin) are a family of proteins defined by having at least one characteristic carbohydrate recognition domain (CRD) with an affinity for beta-galactosides and sharing certain sequence elements. Members of the galectins family are found in mammals, birds, amphibians, fish, nematodes, sponges, and some fungi. Galectins are known to carry out intra- and extracellular functions through glycoconjugate-mediated recogntion. From the cytosol they may be secreted by non-classical pathways, but they may also be targeted to the nucleus or specific sub-cytosolic sites. Within the same peptide chain some galectins have a CRD with only a few additional amino acids, whereas others have two CRDs joined by a link peptide, and one (galectin-3) has one CRD joined to a different type of domain [, ]. The galectin carbohydrate recognition domain (CRD) is a beta-sandwich of about 135 amino acid. The two sheets are slightly bent with 6 strands forming the concave side and 5 strands forming the convex side. The concave side forms a groove in which carbohydrate is bound, and which is long enough to hold about a linear tetrasaccharide [, ].; GO: 0005529 sugar binding; PDB: 2WSU_B 2WT0_A 2WT1_A 2WT2_B 2WSV_A 1HLC_A 2ZGQ_A 3M3Q_B 1WW5_C 3M3E_A ....
Probab=26.29 E-value=1.1e+02 Score=28.20 Aligned_cols=30 Identities=17% Similarity=0.236 Sum_probs=24.9
Q ss_pred cCCCceEEEEccccceEEEEECCEEEEEEE
Q 006249 495 EDGSKTVLHVQSLGHALHAFINGKLVGSGY 524 (654)
Q Consensus 495 ~~g~~~~L~l~~~~d~~~VfVNG~~vGt~~ 524 (654)
..|+...|+|....+..+|+|||+++++-.
T Consensus 80 ~~g~~F~i~I~~~~~~f~I~vng~~~~~F~ 109 (133)
T PF00337_consen 80 QPGQPFEIRIRVEEDGFKIYVNGKHFCSFP 109 (133)
T ss_dssp TTTSEEEEEEEEESSEEEEEETTEEEEEEE
T ss_pred cCCceEEEEEEEecCeeEEEECCeEEEEee
Confidence 345667889988899999999999988654
No 244
>PRK01904 hypothetical protein; Provisional
Probab=26.20 E-value=79 Score=32.36 Aligned_cols=38 Identities=18% Similarity=0.128 Sum_probs=24.0
Q ss_pred CcchhhHHHHHHHHHHHHHhccCCeeEEEec--CcEEECCEEe
Q 006249 1 MASKEILLLVLCWGFVVLATTSFGANVTYDH--RAVVIGGKRR 41 (654)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~--~~~~idG~p~ 41 (654)
|+++.++++++.+++++.+.| .+++... .-+.+||+..
T Consensus 1 MK~~~~~~~~~~l~~s~~a~A---~tL~lp~~i~lL~vnG~kv 40 (219)
T PRK01904 1 MKLRKAALAVATLLTSTASFA---GMVTTSSNIDFLAIDGQKA 40 (219)
T ss_pred CchhHHHHHHHHHHHhHHhhH---heeeCCCceEEEEECCEEC
Confidence 888777777766665554443 2455543 4578899874
No 245
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=26.18 E-value=1.3e+02 Score=29.88 Aligned_cols=45 Identities=20% Similarity=0.275 Sum_probs=39.0
Q ss_pred HHHHHHHCCCCEEE-----EcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEEe
Q 006249 61 LIQKSKDGGLDVIE-----TYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLR 114 (654)
Q Consensus 61 ~l~k~Ka~G~N~V~-----tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr 114 (654)
..+.+++.|+.+|= |-|+|+--+..| .+.+.++.++++|+.|++-
T Consensus 19 ~~~~L~~~Gikgvi~DlDNTLv~wd~~~~tp---------e~~~W~~e~k~~gi~v~vv 68 (175)
T COG2179 19 TPDILKAHGIKGVILDLDNTLVPWDNPDATP---------ELRAWLAELKEAGIKVVVV 68 (175)
T ss_pred CHHHHHHcCCcEEEEeccCceecccCCCCCH---------HHHHHHHHHHhcCCEEEEE
Confidence 35679999999985 568999999998 8999999999999998763
No 246
>KOG3833 consensus Uncharacterized conserved protein, contains RtcB domain [Function unknown]
Probab=25.95 E-value=78 Score=34.32 Aligned_cols=53 Identities=23% Similarity=0.290 Sum_probs=45.6
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcE--E-EEec
Q 006249 57 MWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLY--A-HLRI 115 (654)
Q Consensus 57 ~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~--V-ilr~ 115 (654)
.|++.+.+++..|+ +|+..-+=-..|..|+.| +|+.+.+++|...||- + -|||
T Consensus 444 ~~~sV~D~L~~~~I-~iR~aSpklvmEEAPesY-----KdVtdVVdtc~~aGiskK~~klrP 499 (505)
T KOG3833|consen 444 THESVLDKLRSRGI-AIRVASPKLVMEEAPESY-----KDVTDVVDTCDAAGISKKAIKLRP 499 (505)
T ss_pred cHHHHHHHHHhCCe-EEEeCCccchhhhCchhh-----hhHHHHhhhhhhcccchhhhcccc
Confidence 49999999999999 788888888999999888 4888999999999996 3 3665
No 247
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=25.84 E-value=1.1e+02 Score=33.48 Aligned_cols=49 Identities=18% Similarity=0.302 Sum_probs=37.0
Q ss_pred HHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEEec
Q 006249 58 WPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (654)
Q Consensus 58 W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~ 115 (654)
=++.|+++.++|++-|+. |.|.|+.=- .....+.|+.|.+.|+.|=+..
T Consensus 123 ~~e~l~~L~eAGLDEIRf------Hp~~~~~~~---~e~~i~~l~~A~~~g~dvG~Ei 171 (353)
T COG2108 123 TEEALKALAEAGLDEIRF------HPPRPGSKS---SEKYIENLKIAKKYGMDVGVEI 171 (353)
T ss_pred CHHHHHHHHhCCCCeEEe------cCCCccccc---cHHHHHHHHHHHHhCccceeec
Confidence 468899999999999999 655443322 2367788999999999875553
No 248
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=25.32 E-value=69 Score=38.33 Aligned_cols=52 Identities=19% Similarity=0.352 Sum_probs=37.1
Q ss_pred HHHHHHHHHCCCCEEEE--------cc-cCCCCCCCCceeec--------cc-----cchHHHHHHHHHHcCcEEEEec
Q 006249 59 PDLIQKSKDGGLDVIET--------YV-FWNLHEPVRNQYNF--------EG-----RYDLVKFVKLVAEAGLYAHLRI 115 (654)
Q Consensus 59 ~~~l~k~Ka~G~N~V~t--------yv-~Wn~hEp~~G~~dF--------~g-----~~dl~~fl~la~~~GL~Vilr~ 115 (654)
++.|..+|.+|+|+|+. |+ .|.++- .+| +. ..++..+++.|++.||-|+|..
T Consensus 258 eKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~-----~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLDV 331 (757)
T KOG0470|consen 258 EKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQV-----TNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLLDV 331 (757)
T ss_pred hhhhhHHHHhCccceEEeehhhhhhhhhccCcce-----eEeecccccccCCCcccchHHHHHHHHHHhhCCcEEehhh
Confidence 34588899999999996 22 243331 122 01 2489999999999999999986
No 249
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=25.32 E-value=1.8e+02 Score=31.28 Aligned_cols=68 Identities=15% Similarity=0.350 Sum_probs=49.1
Q ss_pred CcccHHHHHHHHHHCCCCEEEEccc-CCC-CCCCCce-----eecccc--chHHHHHHHHHHcCcEEEEecCccccc
Q 006249 54 TPEMWPDLIQKSKDGGLDVIETYVF-WNL-HEPVRNQ-----YNFEGR--YDLVKFVKLVAEAGLYAHLRIGPYVCA 121 (654)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~N~V~tyv~-Wn~-hEp~~G~-----~dF~g~--~dl~~fl~la~~~GL~Vilr~GPyi~a 121 (654)
+.+.-++.++++++.||-+=.+++- |.. ++..-|. |.|+-. -|..++|+..++.|++|++..=|+|+.
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~lddw~~~~~~~~g~~~~~~f~~d~~~FPdp~~mi~~Lh~~G~~~~~~i~P~v~~ 97 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQDWTGRRETSFGDRLWWNWEWDPERYPGLDELIEELKARGIRVLTYINPYLAD 97 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEccccCcccccccceeeeeeEEChhhCCCHHHHHHHHHHCCCEEEEEecCceec
Confidence 6777899999999999977666554 632 2332232 333332 389999999999999999988777753
No 250
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5.3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....
Probab=25.06 E-value=52 Score=34.25 Aligned_cols=51 Identities=24% Similarity=0.161 Sum_probs=38.4
Q ss_pred HHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEEecC
Q 006249 60 DLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (654)
Q Consensus 60 ~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~G 116 (654)
=...++|++|++.|-+ +|-|.+. -|. +.+..+.+=++.|.++||.+|++.|
T Consensus 75 vS~~mL~d~G~~~vii----GHSERR~-~f~-Etd~~i~~Kv~~al~~gl~pIvCvG 125 (244)
T PF00121_consen 75 VSAEMLKDLGCKYVII----GHSERRQ-YFG-ETDEIINKKVKAALENGLTPIVCVG 125 (244)
T ss_dssp HBHHHHHHTTESEEEE----SCHHHHH-HST--BHHHHHHHHHHHHHTT-EEEEEES
T ss_pred hHHHHHHHhhCCEEEe----ccccccC-ccc-cccHHHHHHHHHHHHCCCEEEEEec
Confidence 3456899999999988 6555432 222 4467899999999999999999987
No 251
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=24.64 E-value=1.2e+02 Score=27.67 Aligned_cols=44 Identities=14% Similarity=0.288 Sum_probs=31.6
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEE
Q 006249 53 STPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAH 112 (654)
Q Consensus 53 ~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vi 112 (654)
.+++...+.++.+++.|+..|=.. +| ..-.+++++|+++||.++
T Consensus 63 ~~~~~~~~~v~~~~~~g~~~v~~~---------~g-------~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 63 VPPDKVPEIVDEAAALGVKAVWLQ---------PG-------AESEELIEAAREAGIRVI 106 (116)
T ss_dssp S-HHHHHHHHHHHHHHT-SEEEE----------TT-------S--HHHHHHHHHTT-EEE
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEE---------cc-------hHHHHHHHHHHHcCCEEE
Confidence 478899999999999998877652 11 255789999999999976
No 252
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=24.60 E-value=4.9e+02 Score=29.14 Aligned_cols=84 Identities=18% Similarity=0.120 Sum_probs=46.3
Q ss_pred eEEEEEEeeCCCCCcccH----HHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEEec-
Q 006249 41 RVLISGSIHYPRSTPEMW----PDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI- 115 (654)
Q Consensus 41 ~~~~sG~iHy~R~~~~~W----~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~- 115 (654)
.++++|.+.-...++... .+.+.+++..++. +|+...=|.... .+....++.++.|++|+-.+
T Consensus 42 ~viIaGDifD~~~p~~~a~~~~~~~l~~L~~~~~~---v~~I~GNHD~~~---------~l~~~~~~l~~~gi~vl~~~~ 109 (407)
T PRK10966 42 AIIVAGDIFDTGSPPSYARELYNRFVVNLQQTGCQ---LVVLAGNHDSVA---------TLNESRDLLAFLNTTVIASAS 109 (407)
T ss_pred EEEECCccccCCCCcHHHHHHHHHHHHHHHhcCCc---EEEEcCCCCChh---------hhhhHHHHHHHCCcEEEeccc
Confidence 467888885433444333 3455677877765 344444444322 24556777889999988554
Q ss_pred -----CcccccccCCCCCCcccccCCC
Q 006249 116 -----GPYVCAEWNFGGFPLWLHFIPG 137 (654)
Q Consensus 116 -----GPyi~aEw~~GG~P~WL~~~p~ 137 (654)
.|... +-..|...+|+...|-
T Consensus 110 ~~~~~~~v~l-~~~~g~~~~~i~~lPy 135 (407)
T PRK10966 110 DDLGHQVIIL-PRRDGTPGAVLCAIPF 135 (407)
T ss_pred ccCCcceEEE-ecCCCCeeeEEEECCC
Confidence 22211 2234445566665553
No 253
>PLN02389 biotin synthase
Probab=24.52 E-value=98 Score=34.39 Aligned_cols=46 Identities=26% Similarity=0.458 Sum_probs=33.1
Q ss_pred HHHHHHHHHHCCCCEEEEcccCCCCCCCCcee-------eccccchHHHHHHHHHHcCcEE
Q 006249 58 WPDLIQKSKDGGLDVIETYVFWNLHEPVRNQY-------NFEGRYDLVKFVKLVAEAGLYA 111 (654)
Q Consensus 58 W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~-------dF~g~~dl~~fl~la~~~GL~V 111 (654)
=++.++++|++|++.+.. ++ |..|..| +|+ +..+.++.|++.||.|
T Consensus 177 ~~E~l~~LkeAGld~~~~----~L-eTs~~~y~~i~~~~s~e---~rl~ti~~a~~~Gi~v 229 (379)
T PLN02389 177 EKEQAAQLKEAGLTAYNH----NL-DTSREYYPNVITTRSYD---DRLETLEAVREAGISV 229 (379)
T ss_pred CHHHHHHHHHcCCCEEEe----ee-cCChHHhCCcCCCCCHH---HHHHHHHHHHHcCCeE
Confidence 468899999999998876 33 3222222 344 6668899999999987
No 254
>cd00070 GLECT Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may be involved in differentiation, cell-cell interaction and cellular regulation.
Probab=24.16 E-value=1.2e+02 Score=27.84 Aligned_cols=29 Identities=21% Similarity=0.155 Sum_probs=24.1
Q ss_pred CCCceEEEEccccceEEEEECCEEEEEEE
Q 006249 496 DGSKTVLHVQSLGHALHAFINGKLVGSGY 524 (654)
Q Consensus 496 ~g~~~~L~l~~~~d~~~VfVNG~~vGt~~ 524 (654)
.|+...|.|....+..+|+|||+++.+-.
T Consensus 76 ~g~~F~l~i~~~~~~f~i~vng~~~~~F~ 104 (127)
T cd00070 76 PGQPFELTILVEEDKFQIFVNGQHFFSFP 104 (127)
T ss_pred CCCeEEEEEEEcCCEEEEEECCEeEEEec
Confidence 45667899988999999999999987644
No 255
>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]
Probab=23.85 E-value=1.4e+02 Score=30.18 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=21.7
Q ss_pred CCCCCcccHHHHHHHHHHCCCCEEEE
Q 006249 50 YPRSTPEMWPDLIQKSKDGGLDVIET 75 (654)
Q Consensus 50 y~R~~~~~W~~~l~k~Ka~G~N~V~t 75 (654)
..|+..++--..-+.+|+.||.++-.
T Consensus 103 fykvDhDyvl~~A~~AKe~Gck~fvL 128 (238)
T KOG4039|consen 103 FYKVDHDYVLQLAQAAKEKGCKTFVL 128 (238)
T ss_pred eEeechHHHHHHHHHHHhCCCeEEEE
Confidence 34788999999999999999987654
No 256
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=23.77 E-value=1.9e+02 Score=30.29 Aligned_cols=82 Identities=22% Similarity=0.296 Sum_probs=55.5
Q ss_pred eeEEEecCcEEECCEEeEEEEEEeeCCCC-CcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeecc--ccchHHHHH
Q 006249 25 ANVTYDHRAVVIGGKRRVLISGSIHYPRS-TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFE--GRYDLVKFV 101 (654)
Q Consensus 25 ~~v~~d~~~~~idG~p~~~~sG~iHy~R~-~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~--g~~dl~~fl 101 (654)
..|.+. .+.+.+..+.++.| +-.+ ..+.-.+.-+.+|+.|....+.|+|=+...| +.|. |..-|..+-
T Consensus 12 s~i~~~--~~~~g~~~~~~IAG---pc~ie~~~~~~~~A~~lk~~~~k~~r~~~~KpRtsp----~s~~g~g~~gl~~l~ 82 (260)
T TIGR01361 12 TVVDVG--GVKIGEGSPIVIAG---PCSVESEEQIMETARFVKEAGAKILRGGAFKPRTSP----YSFQGLGEEGLKLLR 82 (260)
T ss_pred CEEEEC--CEEEcCCcEEEEEe---CCccCCHHHHHHHHHHHHHHHHHhccCceecCCCCC----ccccccHHHHHHHHH
Confidence 345553 35666554666777 2222 4555667778888999988887766543333 4455 467888899
Q ss_pred HHHHHcCcEEEEec
Q 006249 102 KLVAEAGLYAHLRI 115 (654)
Q Consensus 102 ~la~~~GL~Vilr~ 115 (654)
+.|++.||.++-.|
T Consensus 83 ~~~~~~Gl~~~t~~ 96 (260)
T TIGR01361 83 RAADEHGLPVVTEV 96 (260)
T ss_pred HHHHHhCCCEEEee
Confidence 99999999998876
No 257
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=23.77 E-value=1.4e+02 Score=31.25 Aligned_cols=60 Identities=20% Similarity=0.305 Sum_probs=40.1
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCce-eecc-ccchHHHHHHHHHHc-CcEEEEecCc
Q 006249 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQ-YNFE-GRYDLVKFVKLVAEA-GLYAHLRIGP 117 (654)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~-~dF~-g~~dl~~fl~la~~~-GL~Vilr~GP 117 (654)
.++.|.+..+.+.+.|++.|++ |..-|.... =++. ....+.++++.+++. ++-|+++.+|
T Consensus 109 ~~~~~~~~a~~~~~~G~d~iel----N~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~ 171 (289)
T cd02810 109 SKEDYVELARKIERAGAKALEL----NLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSP 171 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEE----EcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCC
Confidence 6788999999999999999999 665554321 0000 112566677777665 6777777664
No 258
>PLN02540 methylenetetrahydrofolate reductase
Probab=23.76 E-value=2e+02 Score=33.83 Aligned_cols=90 Identities=18% Similarity=0.201 Sum_probs=60.0
Q ss_pred HHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcC--cEEEEecCccc-------ccccCCCCCCcc
Q 006249 61 LIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAG--LYAHLRIGPYV-------CAEWNFGGFPLW 131 (654)
Q Consensus 61 ~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~G--L~Vilr~GPyi-------~aEw~~GG~P~W 131 (654)
+|++-.++|.+.|-|-. .||.+ .+.+|++.|++.| +.+|.-+-|-. .+++..--+|.|
T Consensus 161 ~Lk~KvdAGAdFiITQl----------fFD~d---~f~~f~~~~r~~Gi~vPIipGImPI~S~k~l~r~~~l~Gi~IP~~ 227 (565)
T PLN02540 161 YLKEKVDAGADLIITQL----------FYDTD---IFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAE 227 (565)
T ss_pred HHHHHHHcCCCEEeecc----------ccCHH---HHHHHHHHHHhcCCCCCEEeeecccCCHHHHHHHHhccCCcCCHH
Confidence 34444468999999933 35555 7889999999999 55666666643 244666668999
Q ss_pred cccCCCeeeecCChhHHHHHHHHHHHHHHHHHh
Q 006249 132 LHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQ 164 (654)
Q Consensus 132 L~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~ 164 (654)
+.+.=. ....++...++.--++..++++.|.+
T Consensus 228 i~~rLe-~~kddde~v~~~Gieia~e~~~~L~~ 259 (565)
T PLN02540 228 ITAALE-PIKDNDEAVKAYGIHLGTEMCKKILA 259 (565)
T ss_pred HHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 875110 12344556666777778888888873
No 259
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=23.60 E-value=1.1e+03 Score=26.67 Aligned_cols=54 Identities=13% Similarity=0.105 Sum_probs=38.3
Q ss_pred HHHHHHHHHHCCCCEEEEccc----CCCCCCCCceeeccccchHHHHHHHHHHcCcEE--EEecCccc
Q 006249 58 WPDLIQKSKDGGLDVIETYVF----WNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYA--HLRIGPYV 119 (654)
Q Consensus 58 W~~~l~k~Ka~G~N~V~tyv~----Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~V--ilr~GPyi 119 (654)
....++.+.+.|+|+++++.- |..-+.. ..++.+|.++|+++||.+ ++-=+||.
T Consensus 143 ~~~a~~~a~~~g~~afqiF~~npr~w~~~~~~--------~~~~~~f~~~~~~~gi~~~~i~~HapYl 202 (413)
T PTZ00372 143 VDNSPINAYNIAGQAFALFLKNQRTWNSPPLS--------DETIDKFKENCKKYNYDPKFILPHGSYL 202 (413)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCCccCCCCCCC--------HHHHHHHHHHHHHcCCCcceEEeecCce
Confidence 345788999999999999753 4433332 248999999999998852 33345653
No 260
>PRK10426 alpha-glucosidase; Provisional
Probab=23.54 E-value=7.2e+02 Score=29.66 Aligned_cols=65 Identities=18% Similarity=0.315 Sum_probs=43.8
Q ss_pred cHHHHHHHHHHCCCCEEEEcc-cCCCCCCC----Cceeec--ccc--chHHHHHHHHHHcCcEEEEecCccccc
Q 006249 57 MWPDLIQKSKDGGLDVIETYV-FWNLHEPV----RNQYNF--EGR--YDLVKFVKLVAEAGLYAHLRIGPYVCA 121 (654)
Q Consensus 57 ~W~~~l~k~Ka~G~N~V~tyv-~Wn~hEp~----~G~~dF--~g~--~dl~~fl~la~~~GL~Vilr~GPyi~a 121 (654)
..++.++++++.||.+=.+++ .|...... ...+|| +-. -|..++|+..++.|++|++..=|||+.
T Consensus 222 ~v~~v~~~~r~~~IP~d~i~lddw~~~~~~~~g~~~~~~~~~d~~~FPdp~~mi~~L~~~G~k~v~~i~P~v~~ 295 (635)
T PRK10426 222 VVQKKLDTMRNAGVKVNGIWAQDWSGIRMTSFGKRLMWNWKWDSERYPQLDSRIKQLNEEGIQFLGYINPYLAS 295 (635)
T ss_pred HHHHHHHHHHHcCCCeeEEEEecccccccccccccccccceEChhhCCCHHHHHHHHHHCCCEEEEEEcCccCC
Confidence 456789999999976655544 36532221 111233 222 289999999999999999998887743
No 261
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=23.40 E-value=1.7e+02 Score=33.29 Aligned_cols=73 Identities=18% Similarity=0.288 Sum_probs=51.8
Q ss_pred ecCcEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEccc----CCCCC---C------------------
Q 006249 30 DHRAVVIGGKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVF----WNLHE---P------------------ 84 (654)
Q Consensus 30 d~~~~~idG~p~~~~sG~iHy~R~~~~~W~~~l~k~Ka~G~N~V~tyv~----Wn~hE---p------------------ 84 (654)
.-|+|+||=-| |++ +.+.-.+.|+.|-...+|+...++- |-+-- |
T Consensus 6 ~~RGlmLDvaR--------~f~--~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~ 75 (445)
T cd06569 6 EYRGMHLDVAR--------NFH--SKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTC 75 (445)
T ss_pred cccceeeeccC--------CCC--CHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhcccccccccccccc
Confidence 44666666444 333 7888999999999999999998862 43210 0
Q ss_pred --------------CCceeeccccchHHHHHHHHHHcCcEEEEec
Q 006249 85 --------------VRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (654)
Q Consensus 85 --------------~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~ 115 (654)
..|.|. ..|+..+++.|++.|+.||..+
T Consensus 76 ~~~~~~~~~~~~~~~~g~YT---~~di~eiv~yA~~rgI~VIPEI 117 (445)
T cd06569 76 LLPQLGSGPDTNNSGSGYYS---RADYIEILKYAKARHIEVIPEI 117 (445)
T ss_pred cccccccCcccCcccCCccC---HHHHHHHHHHHHHcCCEEEEcc
Confidence 012222 3599999999999999999764
No 262
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=23.21 E-value=2.1e+02 Score=31.61 Aligned_cols=66 Identities=14% Similarity=0.181 Sum_probs=47.7
Q ss_pred CEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEEecC
Q 006249 38 GKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (654)
Q Consensus 38 G~p~~~~sG~iHy~R~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~G 116 (654)
.++.++++|..- .....+++....+++.|+.++.. +-.+|.| ..+ ++++.++++++.+..+|+-.|
T Consensus 31 ~~~~livt~~~~---~~~g~~~~v~~~L~~~~i~~~~f----~~v~~np---~~~---~v~~~~~~~~~~~~D~IiaiG 96 (383)
T PRK09860 31 FTRTLIVTDNML---TKLGMAGDVQKALEERNIFSVIY----DGTQPNP---TTE---NVAAGLKLLKENNCDSVISLG 96 (383)
T ss_pred CCEEEEEcCcch---hhCccHHHHHHHHHHcCCeEEEe----CCCCCCc---CHH---HHHHHHHHHHHcCCCEEEEeC
Confidence 378888877411 12456788888899999864332 5566655 233 788999999999999999997
No 263
>PRK10658 putative alpha-glucosidase; Provisional
Probab=23.03 E-value=1.8e+02 Score=34.80 Aligned_cols=65 Identities=18% Similarity=0.345 Sum_probs=46.5
Q ss_pred cccHHHHHHHHHHCCCCE--EEEcccCCCCCC-CCceeeccccc--hHHHHHHHHHHcCcEEEEecCccccc
Q 006249 55 PEMWPDLIQKSKDGGLDV--IETYVFWNLHEP-VRNQYNFEGRY--DLVKFVKLVAEAGLYAHLRIGPYVCA 121 (654)
Q Consensus 55 ~~~W~~~l~k~Ka~G~N~--V~tyv~Wn~hEp-~~G~~dF~g~~--dl~~fl~la~~~GL~Vilr~GPyi~a 121 (654)
.+...+.++++|+.|+-+ |..-.+|. .. .-+.|.|+-.+ |..++++..++.|++|++.+=|||..
T Consensus 282 e~~v~~~~~~~r~~~iP~d~i~lD~~w~--~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i~P~i~~ 351 (665)
T PRK10658 282 EATVNSFIDGMAERDLPLHVFHFDCFWM--KEFQWCDFEWDPRTFPDPEGMLKRLKAKGLKICVWINPYIAQ 351 (665)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEchhhh--cCCceeeeEEChhhCCCHHHHHHHHHHCCCEEEEeccCCcCC
Confidence 444677889999999864 33444563 22 22456665332 88999999999999999999998854
No 264
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=22.97 E-value=1.4e+02 Score=31.41 Aligned_cols=45 Identities=18% Similarity=0.384 Sum_probs=36.1
Q ss_pred HHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEEec
Q 006249 59 PDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (654)
Q Consensus 59 ~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~ 115 (654)
.+.|+.+.+.|+..|++.+..+ +++ .+...++.|+++|+.|.+-+
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~---------~~~---~~~~~i~~ak~~G~~v~~~~ 129 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKH---------EFD---EALPLIKAIKEKGYEVFFNL 129 (266)
T ss_pred HHHHHHHhcCCcCEEEEecccc---------cHH---HHHHHHHHHHHCCCeEEEEE
Confidence 4578889999999999987554 343 78889999999999887654
No 265
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=22.97 E-value=70 Score=34.75 Aligned_cols=49 Identities=12% Similarity=0.266 Sum_probs=31.0
Q ss_pred HHHHHHHHHCCCCEEEEcccCCCC------CCCCceeeccccchHHHHHHHHHHcCcEE
Q 006249 59 PDLIQKSKDGGLDVIETYVFWNLH------EPVRNQYNFEGRYDLVKFVKLVAEAGLYA 111 (654)
Q Consensus 59 ~~~l~k~Ka~G~N~V~tyv~Wn~h------Ep~~G~~dF~g~~dl~~fl~la~~~GL~V 111 (654)
++.|++||++|++.+-. .-.... .-.|+...++ +..+.++.|+++||.|
T Consensus 141 ~e~l~~LkeAGl~~i~~-~~~E~~~~~v~~~i~~~~~~~~---~~~~~i~~a~~~Gi~v 195 (343)
T TIGR03551 141 EEALKRLKEAGLDSMPG-TAAEILDDEVRKVICPDKLSTA---EWIEIIKTAHKLGIPT 195 (343)
T ss_pred HHHHHHHHHhCcccccC-cchhhcCHHHHHhcCCCCCCHH---HHHHHHHHHHHcCCcc
Confidence 67899999999998741 000100 0123333333 5578999999999976
No 266
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=22.91 E-value=66 Score=35.10 Aligned_cols=51 Identities=16% Similarity=0.227 Sum_probs=31.7
Q ss_pred HHHHHHHHHHCCCCEEE-----EcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEE
Q 006249 58 WPDLIQKSKDGGLDVIE-----TYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYA 111 (654)
Q Consensus 58 W~~~l~k~Ka~G~N~V~-----tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~V 111 (654)
-++.|+++|++|++.+- ++..--.+.-.|+....+ +..+.++.|+++|+.+
T Consensus 149 ~~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~---~~l~~i~~a~~~Gi~~ 204 (351)
T TIGR03700 149 TEEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAE---RWLEIHRTAHELGLKT 204 (351)
T ss_pred HHHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHH---HHHHHHHHHHHcCCCc
Confidence 35669999999997654 221111122224433333 5568999999999986
No 267
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=22.71 E-value=63 Score=34.83 Aligned_cols=59 Identities=22% Similarity=0.375 Sum_probs=38.7
Q ss_pred EEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEE-Eec
Q 006249 42 VLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAH-LRI 115 (654)
Q Consensus 42 ~~~sG~iHy~R~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vi-lr~ 115 (654)
++++-+..--+ -|+.|++.|..+-++|+|.|.- +|+.-. |...|.++|+++|..++ +|.
T Consensus 36 liiGiA~~GG~-lp~~w~~~i~~Ai~~Gl~IvsG-----LH~~L~---------ddpel~~~A~~~g~~i~DvR~ 95 (301)
T PF07755_consen 36 LIIGIAPAGGR-LPPSWRPVILEAIEAGLDIVSG-----LHDFLS---------DDPELAAAAKKNGVRIIDVRK 95 (301)
T ss_dssp EEE---STTHC-CHCCHHHHHHHHHHTT-EEEE------SSS-HC---------CHHHHHCCHHCCT--EEETTS
T ss_pred EEEecCcCCCc-CCHHHHHHHHHHHHcCCCEEec-----Chhhhc---------cCHHHHHHHHHcCCeEeeccC
Confidence 34443333333 4588999999999999999985 676443 77799999999999876 553
No 268
>KOG0805 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=22.68 E-value=2.7e+02 Score=29.33 Aligned_cols=74 Identities=23% Similarity=0.446 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccccCCCeeeecCChhHHHHHHHHHH-----------HHHHHHHh
Q 006249 96 DLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTA-----------KIVDMMKQ 164 (654)
Q Consensus 96 dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~-----------~l~~~i~~ 164 (654)
...++++.|++.|-..+|-|--+| ||.|.|... ++.+-+.++.=+++.++|.. +|+..-+
T Consensus 38 K~~~~~~Eaa~~Ga~LV~fPEAfi------GGYPrg~~F--g~~~G~r~~eGR~ef~kY~a~AIev~gpEv~~l~~la~- 108 (337)
T KOG0805|consen 38 KAEKYIVEAASKGAELVLFPEAFI------GGYPRGFRF--GLAVGVRNEEGRDEFRKYHASAIEVPGPEVERLAELAK- 108 (337)
T ss_pred HHHHHHHHHhcCCceEEEeehHhc------cCCCCccee--eEEEeecchhhhHHHHHHHHHhhcCCChHHHHHHHHhh-
Confidence 466889999999999999885554 999999874 33333344443444444432 3333333
Q ss_pred cccccccCCceEeeccccc
Q 006249 165 EKLYASQGGPIILSQIENE 183 (654)
Q Consensus 165 ~~l~~~~gGpII~~QIENE 183 (654)
++.-.++|=-||-|
T Consensus 109 -----~~~v~lv~G~iEre 122 (337)
T KOG0805|consen 109 -----KNNVYLVMGAIERE 122 (337)
T ss_pred -----cCCeEEEEEEEecc
Confidence 34446777778888
No 269
>PF10435 BetaGal_dom2: Beta-galactosidase, domain 2; InterPro: IPR018954 This is the second domain of the five-domain beta-galactosidase enzyme that altogether catalyses the hydrolysis of beta(1-3) and beta(1-4) galactosyl bonds in oligosaccharides as well as the inverse reaction of enzymatic condensation and trans-glycosylation. This domain is made up of 16 antiparallel beta-strands and an alpha-helix at its C terminus. The fold of this domain appears to be unique. In addition, the last seven strands of the domain form a subdomain with an immunoglobulin-like (I-type Ig) fold in which the first strand is divided between the two beta-sheets. In penicillin spp this strand is interrupted by a 12-residue insertion which forms an additional edge-strand to the second beta-sheet of the sub-domain. The remainder of the second domain forms a series of beta-hairpins at its N terminus, four strands of which are contiguous with part of the Ig-like sub-domain, forming in total a seven-stranded antiparallel beta-sheet. This domain is associated with IPR001944 from INTERPRO, which is N-terminal to it, but itself has no metazoan members. ; GO: 0004565 beta-galactosidase activity; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A.
Probab=22.66 E-value=2.5e+02 Score=27.98 Aligned_cols=39 Identities=13% Similarity=0.187 Sum_probs=22.1
Q ss_pred ceeEEEe---cCCCceeEEEeecCCcceeEEEE------CCeEEeecC
Q 006249 360 LEATVYK---TGSGLCSAFLANIGTNSDVTVKF------NGNSYLLPA 398 (654)
Q Consensus 360 ~~~~~y~---~~~~~~~~Fl~N~~~~~~~~v~~------~~~~~~~p~ 398 (654)
....++. ++.++.|.++.+.+......+.| ..++++||.
T Consensus 18 ~~i~vt~l~np~t~a~Fyvvrh~~~~s~~~~~f~l~v~Ts~G~~tiPq 65 (183)
T PF10435_consen 18 SAIFVTHLRNPDTGAGFYVVRHNDSTSTASTSFTLNVNTSDGTLTIPQ 65 (183)
T ss_dssp TTEEEEEEE-STTS-EEEEEEESSTT--S-EEE-EEEEETTEEEEE-T
T ss_pred CCEEEEEeeCCCCCcEEEEEEccCCCCCCceEEEEEeecCCeeEEecc
Confidence 3444444 67778999998866544333333 377888884
No 270
>smart00276 GLECT Galectin. Galectin - galactose-binding lectin
Probab=22.49 E-value=1.3e+02 Score=27.66 Aligned_cols=30 Identities=17% Similarity=0.155 Sum_probs=24.5
Q ss_pred CCCceEEEEccccceEEEEECCEEEEEEEc
Q 006249 496 DGSKTVLHVQSLGHALHAFINGKLVGSGYG 525 (654)
Q Consensus 496 ~g~~~~L~l~~~~d~~~VfVNG~~vGt~~g 525 (654)
.|+...|.|....+..+|+|||+.+.+-..
T Consensus 75 ~g~~F~l~i~~~~~~f~i~vng~~~~~f~~ 104 (128)
T smart00276 75 PGQPFDLTIIVQPDHFQIFVNGVHITTFPH 104 (128)
T ss_pred CCCEEEEEEEEcCCEEEEEECCEeEEEecC
Confidence 455678888888999999999999886543
No 271
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=22.45 E-value=1.5e+02 Score=30.22 Aligned_cols=46 Identities=24% Similarity=0.252 Sum_probs=29.6
Q ss_pred HHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEEec
Q 006249 58 WPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (654)
Q Consensus 58 W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~ 115 (654)
-+..+.++|+||.+.|-.| |..|-=.-+ .+...-+.|.++|+++ .|
T Consensus 137 vetAiaml~dmG~~SiKff-------Pm~Gl~~le---E~~avAkA~a~~g~~l--EP 182 (218)
T PF07071_consen 137 VETAIAMLKDMGGSSIKFF-------PMGGLKHLE---ELKAVAKACARNGFTL--EP 182 (218)
T ss_dssp HHHHHHHHHHTT--EEEE----------TTTTTHH---HHHHHHHHHHHCT-EE--EE
T ss_pred HHHHHHHHHHcCCCeeeEe-------ecCCcccHH---HHHHHHHHHHHcCcee--CC
Confidence 5778999999999999984 222221112 5666778889999998 77
No 272
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=22.37 E-value=1.6e+02 Score=27.49 Aligned_cols=45 Identities=20% Similarity=0.271 Sum_probs=35.8
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEEe
Q 006249 57 MWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLR 114 (654)
Q Consensus 57 ~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr 114 (654)
.-++.++++++.|+.+|.+ .-|.... ....+.+.|++.||.+++-
T Consensus 17 ~~~e~v~~A~~~Gl~~i~i----TDH~~~~---------~~~~~~~~~~~~~i~vi~G 61 (175)
T PF02811_consen 17 SPEEYVEQAKEKGLDAIAI----TDHNNFA---------GYPDFYKEAKKKGIKVIPG 61 (175)
T ss_dssp SHHHHHHHHHHTTESEEEE----EEETTTT---------THHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHHHcCCCEEEE----cCCcccc---------cchHHHHHHHhcCCceEEe
Confidence 4678899999999999988 5553322 4778999999999998864
No 273
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=22.27 E-value=1.9e+02 Score=30.49 Aligned_cols=60 Identities=27% Similarity=0.356 Sum_probs=40.6
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCcee--ec-cccchHHHHHHHHHHc-CcEEEEecCc
Q 006249 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQY--NF-EGRYDLVKFVKLVAEA-GLYAHLRIGP 117 (654)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~--dF-~g~~dl~~fl~la~~~-GL~Vilr~GP 117 (654)
.++.|.+..++++++|++.|++ |+.-|..... .+ ..-+.+.++++.+++. ++-|.++.+|
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iEl----N~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~ 163 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIEL----NISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTP 163 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE----ECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCC
Confidence 4788999999999999999999 5555543211 11 1123566778877776 6667766653
No 274
>PRK01060 endonuclease IV; Provisional
Probab=22.19 E-value=4e+02 Score=27.50 Aligned_cols=63 Identities=16% Similarity=0.089 Sum_probs=38.1
Q ss_pred CCcccHHHHHHHHHHCCCCE--EEE--cccCCCCCCCCceeeccccchHHHHHHHHHHcCcE-EEEecC
Q 006249 53 STPEMWPDLIQKSKDGGLDV--IET--YVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLY-AHLRIG 116 (654)
Q Consensus 53 ~~~~~W~~~l~k~Ka~G~N~--V~t--yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~-Vilr~G 116 (654)
..++.-+..-+.+++.|+.. +.. ....|+-.|.|...+.+ ...+.+.|++|++.|-. |++.+|
T Consensus 44 ~~~~~~~~lk~~~~~~gl~~~~~~~h~~~~~nl~~~d~~~r~~s-~~~~~~~i~~A~~lga~~vv~h~G 111 (281)
T PRK01060 44 LEELNIEAFKAACEKYGISPEDILVHAPYLINLGNPNKEILEKS-RDFLIQEIERCAALGAKLLVFHPG 111 (281)
T ss_pred CCHHHHHHHHHHHHHcCCCCCceEEecceEecCCCCCHHHHHHH-HHHHHHHHHHHHHcCCCEEEEcCC
Confidence 34444444445677899873 222 22245555555444333 34788999999999997 456665
No 275
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=22.18 E-value=1.6e+02 Score=32.34 Aligned_cols=47 Identities=30% Similarity=0.475 Sum_probs=39.8
Q ss_pred HHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEEecC
Q 006249 58 WPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (654)
Q Consensus 58 W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~G 116 (654)
.++.+..+| |+..++. .-.||-| .++ -|.+-+++|+++++..+|-.|
T Consensus 47 ydqV~~~Lk--g~~~~E~----~GVEPNP---~~~---Tv~kaV~i~kee~idflLAVG 93 (384)
T COG1979 47 YDQVVEALK--GIEVIEF----GGVEPNP---RLE---TLMKAVEICKEENIDFLLAVG 93 (384)
T ss_pred HHHHHHHhc--CceEEEe----cCCCCCc---hHH---HHHHHHHHHHHcCceEEEEec
Confidence 556677777 9999998 8899998 344 788999999999999999997
No 276
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=22.05 E-value=2.5e+02 Score=28.19 Aligned_cols=65 Identities=14% Similarity=0.107 Sum_probs=41.8
Q ss_pred EEEEEeeCCCCCcccHHHHHHHHH-HCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEEecC
Q 006249 43 LISGSIHYPRSTPEMWPDLIQKSK-DGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (654)
Q Consensus 43 ~~sG~iHy~R~~~~~W~~~l~k~K-a~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~G 116 (654)
+..+.+.+.. ++.+.+.|++.. +.|+--|..+-.. +.++.......+.++++|+++|+-|++-+|
T Consensus 73 ~~~~~~~~~~--~~~~~~~l~~~~~~~g~~Gv~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~pv~~H~g 138 (273)
T PF04909_consen 73 IGFAAIPPPD--PEDAVEELERALQELGFRGVKLHPDL-------GGFDPDDPRLDDPIFEAAEELGLPVLIHTG 138 (273)
T ss_dssp EEEEEETTTS--HHHHHHHHHHHHHTTTESEEEEESSE-------TTCCTTSGHCHHHHHHHHHHHT-EEEEEES
T ss_pred EEEEEecCCC--chhHHHHHHHhccccceeeeEecCCC-------CccccccHHHHHHHHHHHHhhccceeeecc
Confidence 3444555544 445556665555 9999999975432 223333322336999999999999999987
No 277
>PRK08227 autoinducer 2 aldolase; Validated
Probab=22.04 E-value=85 Score=33.17 Aligned_cols=48 Identities=10% Similarity=0.122 Sum_probs=37.5
Q ss_pred HHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEE
Q 006249 60 DLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHL 113 (654)
Q Consensus 60 ~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vil 113 (654)
-..+.+-.+|.++|.++|+|.- .+.-+--.+|.+..+.|++.||-+++
T Consensus 98 ~sVeeAvrlGAdAV~~~v~~Gs------~~E~~~l~~l~~v~~ea~~~G~Plla 145 (264)
T PRK08227 98 VDMEDAVRLNACAVAAQVFIGS------EYEHQSIKNIIQLVDAGLRYGMPVMA 145 (264)
T ss_pred ecHHHHHHCCCCEEEEEEecCC------HHHHHHHHHHHHHHHHHHHhCCcEEE
Confidence 4477788999999999999972 11122234899999999999999886
No 278
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=22.01 E-value=79 Score=38.85 Aligned_cols=76 Identities=22% Similarity=0.411 Sum_probs=49.6
Q ss_pred CcccHHHHHHHHHHCCCCEEEE------------cccCCCCCC------CCceeeccccchHHHHHHHHH-HcCcEEEEe
Q 006249 54 TPEMWPDLIQKSKDGGLDVIET------------YVFWNLHEP------VRNQYNFEGRYDLVKFVKLVA-EAGLYAHLR 114 (654)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~N~V~t------------yv~Wn~hEp------~~G~~dF~g~~dl~~fl~la~-~~GL~Vilr 114 (654)
|-+.|+.+|+++|+.|.|+|.. |-.-++||- .-++|.|+ |+..+++.|+ +-++.-|-.
T Consensus 140 pl~eWeprL~va~e~gYNmIHfTPlqelG~S~S~YSl~dql~~~~~~~~~~~k~s~e---DV~~lV~~l~rewnvlsi~D 216 (1521)
T KOG3625|consen 140 PLDEWEPRLRVAKESGYNMIHFTPLQELGLSRSCYSLADQLELNPDFSRPNRKYSFE---DVGQLVEKLKREWNVLSITD 216 (1521)
T ss_pred ChhhhhHHHHHHHHcCCceEeeeeHHHhccCCCccchHhhhhcChhhhccCCCCCHH---HHHHHHHHHHhhcCeeeeeh
Confidence 6689999999999999999973 333333332 22568888 9999999886 556554433
Q ss_pred cCcccccccCC-CCCCcccccCCCe
Q 006249 115 IGPYVCAEWNF-GGFPLWLHFIPGI 138 (654)
Q Consensus 115 ~GPyi~aEw~~-GG~P~WL~~~p~~ 138 (654)
+ + |+. ..--.||.++|+.
T Consensus 217 v---V---~NHtAnns~WlleHPea 235 (1521)
T KOG3625|consen 217 V---V---YNHTANNSKWLLEHPEA 235 (1521)
T ss_pred h---h---hhccccCCchhHhCchh
Confidence 2 1 111 1123577777753
No 279
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=21.80 E-value=1e+02 Score=33.92 Aligned_cols=49 Identities=10% Similarity=0.093 Sum_probs=39.0
Q ss_pred HHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEEec
Q 006249 61 LIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (654)
Q Consensus 61 ~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~ 115 (654)
.++.+-.+|.++|.+.|+|.- .+...--.+|.+..+.|++.||-++++.
T Consensus 151 sVedAlrLGAdAV~~tvy~Gs------~~E~~ml~~l~~i~~ea~~~GlPlv~~~ 199 (348)
T PRK09250 151 SVEDALRLGAVAVGATIYFGS------EESRRQIEEISEAFEEAHELGLATVLWS 199 (348)
T ss_pred cHHHHHHCCCCEEEEEEecCC------HHHHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 467788999999999999972 2223334589999999999999999854
No 280
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.79 E-value=2.8e+02 Score=22.05 Aligned_cols=57 Identities=14% Similarity=0.226 Sum_probs=38.2
Q ss_pred cccHHHHHHHHHHCCCCEEEEccc-CCCCCCCCceeeccccchHHHHHHHHHHcCcEEE
Q 006249 55 PEMWPDLIQKSKDGGLDVIETYVF-WNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAH 112 (654)
Q Consensus 55 ~~~W~~~l~k~Ka~G~N~V~tyv~-Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vi 112 (654)
|..-.+.++.+.+.|+|..+++.. ....+...-.+..++ .|.+++++..++.|..|+
T Consensus 12 pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~-~~~~~~~~~L~~~G~~v~ 69 (72)
T cd04883 12 PGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQT-MNPRPIIEDLRRAGYEVL 69 (72)
T ss_pred CCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEec-CCHHHHHHHHHHCCCeee
Confidence 345667888899999999999753 111111122445555 566799999999997654
No 281
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=21.72 E-value=2e+02 Score=35.97 Aligned_cols=74 Identities=11% Similarity=0.104 Sum_probs=53.9
Q ss_pred eeCCCC---CcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeecccc--chHHHHHHHHHHcCcEEEEecCcccccc
Q 006249 48 IHYPRS---TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGR--YDLVKFVKLVAEAGLYAHLRIGPYVCAE 122 (654)
Q Consensus 48 iHy~R~---~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~--~dl~~fl~la~~~GL~Vilr~GPyi~aE 122 (654)
+|..|+ +.+..++.++++++.||-+=.+++-|.+..- -+.|.|+-. -|..++++..++.|+++++-.-|+|..|
T Consensus 190 y~qSR~~Y~sq~eV~eva~~fre~~IP~DvIwlDidYm~g-~~~FTwD~~rFPdP~~mv~~Lh~~G~kvv~iidPgI~~d 268 (978)
T PLN02763 190 YQQCRWSYESAKRVAEIARTFREKKIPCDVVWMDIDYMDG-FRCFTFDKERFPDPKGLADDLHSIGFKAIWMLDPGIKAE 268 (978)
T ss_pred eeeccCCCCCHHHHHHHHHHHHHcCCCceEEEEehhhhcC-CCceeECcccCCCHHHHHHHHHHCCCEEEEEEcCCCccC
Confidence 455554 4455678899999999987666666555542 334666532 3889999999999999988878888754
No 282
>PF02472 ExbD: Biopolymer transport protein ExbD/TolR; InterPro: IPR003400 This group of proteins are membrane bound transport proteins essential for ferric ion uptake in bacteria []. The family consists of ExbD, and TolR which are involved in TonB-dependent transport of various receptor bound substrates including colicins [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2JWL_A 2JWK_A 2PFU_A.
Probab=21.54 E-value=1.8e+02 Score=26.28 Aligned_cols=65 Identities=17% Similarity=0.259 Sum_probs=38.5
Q ss_pred CeeEEEec-CcEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCE--EEEcccCCCCCCCCceeeccccchHHHH
Q 006249 24 GANVTYDH-RAVVIGGKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDV--IETYVFWNLHEPVRNQYNFEGRYDLVKF 100 (654)
Q Consensus 24 ~~~v~~d~-~~~~idG~p~~~~sG~iHy~R~~~~~W~~~l~k~Ka~G~N~--V~tyv~Wn~hEp~~G~~dF~g~~dl~~f 100 (654)
...+.+++ +.+.+||+++ +.+..+..|+..++.-=+. |... ..+.-.+. ++.+.
T Consensus 55 ~~~i~i~~~g~i~~~~~~v------------~~~~L~~~l~~~~~~~~~~~~v~i~--------aD~~~~y~---~vv~v 111 (130)
T PF02472_consen 55 PLTISIDADGSIFLNGKPV------------DLEELEARLKELKQKNPDPVRVLIR--------ADKDAPYQ---DVVDV 111 (130)
T ss_dssp -SEEEEETTCEEEETTEEE-------------CCCHHHHHHHHCCC-TTS--EEEE--------E-TTS-HH---HHHHH
T ss_pred eEEEEECCCCcEEECCCcC------------chHHHHHHHHHhhccCCCcceEEEE--------eCCCCCHH---HHHHH
Confidence 34467765 5788888883 6677888888877654433 2220 11222233 89999
Q ss_pred HHHHHHcCcEE
Q 006249 101 VKLVAEAGLYA 111 (654)
Q Consensus 101 l~la~~~GL~V 111 (654)
++.|++.|+.-
T Consensus 112 l~~l~~~g~~~ 122 (130)
T PF02472_consen 112 LDALREAGFTK 122 (130)
T ss_dssp HHHHHHTT---
T ss_pred HHHHHHcCCCE
Confidence 99999999863
No 283
>PLN02229 alpha-galactosidase
Probab=21.33 E-value=1.8e+02 Score=32.92 Aligned_cols=70 Identities=14% Similarity=0.176 Sum_probs=48.9
Q ss_pred CCCCCcccHHHHHHHH-----HHCCCCEEEEcccCCCCCC-CCcee-----eccccchHHHHHHHHHHcCcEE--EEecC
Q 006249 50 YPRSTPEMWPDLIQKS-----KDGGLDVIETYVFWNLHEP-VRNQY-----NFEGRYDLVKFVKLVAEAGLYA--HLRIG 116 (654)
Q Consensus 50 y~R~~~~~W~~~l~k~-----Ka~G~N~V~tyv~Wn~hEp-~~G~~-----dF~g~~dl~~fl~la~~~GL~V--ilr~G 116 (654)
+..+..+.-++..+.| |++|.+.|-+---|...+. .-|.+ .|- .-+..+.+.+++.||+. -.-+|
T Consensus 74 ~~~i~E~~i~~~ad~~v~~Gl~~~Gy~yv~iDDgW~~~~rd~~G~l~~d~~rFP--~G~k~ladyiH~~GlKfGIy~d~G 151 (427)
T PLN02229 74 ACNINETVIKETADALVSTGLADLGYIHVNIDDCWSNLKRDSKGQLVPDPKTFP--SGIKLLADYVHSKGLKLGIYSDAG 151 (427)
T ss_pred CcccCHHHHHHHHHHHHHhHHHhCCCEEEEEcCCcCCCCcCCCCCEEEChhhcC--CcHHHHHHHHHHCCCceEEeccCC
Confidence 4445666667777764 9999999999999975432 22433 132 13888899999999985 46677
Q ss_pred ccccc
Q 006249 117 PYVCA 121 (654)
Q Consensus 117 Pyi~a 121 (654)
..-|+
T Consensus 152 ~~TC~ 156 (427)
T PLN02229 152 VFTCQ 156 (427)
T ss_pred CcccC
Confidence 77775
No 284
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=21.28 E-value=2.8e+02 Score=29.86 Aligned_cols=53 Identities=13% Similarity=0.185 Sum_probs=36.1
Q ss_pred HHHHHHHHHHCCCCEEEEcccCCCCCCCCceeec-ccc---chHHHHHHHHHHcCc-EEEEe
Q 006249 58 WPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNF-EGR---YDLVKFVKLVAEAGL-YAHLR 114 (654)
Q Consensus 58 W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF-~g~---~dl~~fl~la~~~GL-~Vilr 114 (654)
..+.++.++++|++.|.+ +++-..|..|+- ++. ..+.+.|+.|.+.|+ .|-+.
T Consensus 103 l~~~~~~L~~aGl~~v~I----SlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in 160 (329)
T PRK13361 103 LARFAAELADAGLKRLNI----SLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLN 160 (329)
T ss_pred HHHHHHHHHHcCCCeEEE----EeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEE
Confidence 456788999999999887 555555555542 222 267777888888887 45443
No 285
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.18 E-value=34 Score=34.03 Aligned_cols=65 Identities=26% Similarity=0.391 Sum_probs=44.4
Q ss_pred EEEEEEeeCCCC---CcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCc--eeeccccchHHHHHHHHHHcCcEEEEe
Q 006249 42 VLISGSIHYPRS---TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRN--QYNFEGRYDLVKFVKLVAEAGLYAHLR 114 (654)
Q Consensus 42 ~~~sG~iHy~R~---~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G--~~dF~g~~dl~~fl~la~~~GL~Vilr 114 (654)
..-+|--.|.|+ .|-.-+ +-+.++|++.+-.-- --..| -|||-...+|..|+++|+++||.+-|-
T Consensus 117 VVAaGYaDa~Rvgsv~Pl~~P---~vaa~ag~DvaMvDT-----aiKDGkslFdfm~~e~l~eFvd~Ah~hGL~~AlA 186 (235)
T COG1891 117 VVAAGYADAHRVGSVSPLLLP---EVAAEAGADVAMVDT-----AIKDGKSLFDFMDEEELEEFVDLAHEHGLEVALA 186 (235)
T ss_pred EEeccccchhhccCcCccccH---HHHHhcCCCEEEEec-----ccccchhHHhhhcHHHHHHHHHHHHHcchHHHhc
Confidence 345666667775 344333 356788988754411 11234 599988889999999999999988663
No 286
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=21.12 E-value=77 Score=33.45 Aligned_cols=52 Identities=15% Similarity=0.140 Sum_probs=42.6
Q ss_pred HHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEEec
Q 006249 61 LIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (654)
Q Consensus 61 ~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~ 115 (654)
.-+.+|+.|-++|-.-|.|..-||+-.+ .-..-+++|...|..+||-.+|.|
T Consensus 116 sa~riK~~G~~avK~Lvy~~~D~~e~ne---qk~a~ierigsec~aedi~f~lE~ 167 (306)
T COG3684 116 SAKRIKEDGGDAVKFLVYYRSDEDEINE---QKLAYIERIGSECHAEDLPFFLEP 167 (306)
T ss_pred CHHHHHHhcccceEEEEEEcCCchHHhH---HHHHHHHHHHHHhhhcCCceeEee
Confidence 4567999999999999999999983222 222368999999999999999987
No 287
>PF08306 Glyco_hydro_98M: Glycosyl hydrolase family 98; InterPro: IPR013191 This domain is the putative catalytic domain of glycosyl hydrolase family 98 proteins.; PDB: 2VNO_B 2VNR_A 2VNG_B 2WMH_A 2WMG_A 2WMF_A 2WMK_A 2WMJ_B 2WMI_B.
Probab=20.90 E-value=74 Score=34.48 Aligned_cols=89 Identities=20% Similarity=0.446 Sum_probs=47.4
Q ss_pred EEEEEEeeCC------CCCcccHHHHHHHHHH-CCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEEe
Q 006249 42 VLISGSIHYP------RSTPEMWPDLIQKSKD-GGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLR 114 (654)
Q Consensus 42 ~~~sG~iHy~------R~~~~~W~~~l~k~Ka-~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr 114 (654)
++.||. |.+ +++.+-+++-.++--. .|+|-+|-| |..-++.. ....++|++|+++|-+.|--
T Consensus 104 q~~sgG-~~~~y~~~~~~~~~~~~e~fr~Ypnf~G~n~~Eqf--Wgf~~~~~--------~~~A~lLkl~akYGGy~iWs 172 (324)
T PF08306_consen 104 QPSSGG-HFPDYSAYHDIENTWYEEFFRDYPNFQGFNYAEQF--WGFDDPGS--------EHFADLLKLCAKYGGYFIWS 172 (324)
T ss_dssp EEEECC-G-TTT-GCCG--HHHHHHHHHH-TTEEEEEEE--T--TS--TTHH--------HHHHHHHHHHHHTT-EEEEE
T ss_pred EecCCC-CCCCccccccCChHHHHHHHHhCccccccccHhhh--eecCCchh--------HHHHHHHHHHHHhCceEEee
Confidence 456777 833 3455555555555443 488888875 55555443 37889999999999988321
Q ss_pred cCcccccccCCC-CCCcccccCCCeeeecCChhHHHHHHHHH
Q 006249 115 IGPYVCAEWNFG-GFPLWLHFIPGIQFRTDNEPFKAEMQRFT 155 (654)
Q Consensus 115 ~GPyi~aEw~~G-G~P~WL~~~p~~~~R~~d~~y~~~~~~~~ 155 (654)
+=.++ .+-.|+-. ..++.|++++++|-
T Consensus 173 -------~~~N~~am~k~~~~-------~~~~~~~~A~~~y~ 200 (324)
T PF08306_consen 173 -------DQNNPIAMEKWFGE-------QRNPEFKDACEKYS 200 (324)
T ss_dssp ----------GGGHHHHHCCC-------CCSHHHHHHHHHHG
T ss_pred -------cCCChHHHHHhhhh-------ccCHHHHHHHHHhh
Confidence 11111 11222221 26788888888774
No 288
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=20.66 E-value=1.2e+02 Score=31.60 Aligned_cols=65 Identities=20% Similarity=0.254 Sum_probs=38.6
Q ss_pred CCCcccHHHHHHHHHHCCCCEEEEccc-CCCC---CCCCceeec-cccchHHHHHHHHHHcCcEEEEecC
Q 006249 52 RSTPEMWPDLIQKSKDGGLDVIETYVF-WNLH---EPVRNQYNF-EGRYDLVKFVKLVAEAGLYAHLRIG 116 (654)
Q Consensus 52 R~~~~~W~~~l~k~Ka~G~N~V~tyv~-Wn~h---Ep~~G~~dF-~g~~dl~~fl~la~~~GL~Vilr~G 116 (654)
..+++.|++..+..|+.|+..+.|..- -++. +...-.|-- |+...-..||+.+++.|+-|||-.|
T Consensus 52 el~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG 121 (241)
T PF03102_consen 52 ELSEEQHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTG 121 (241)
T ss_dssp SS-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-T
T ss_pred cCCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECC
Confidence 358999999999999999999999432 1111 001111111 3444445689999999999999886
No 289
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=20.62 E-value=1.2e+02 Score=32.99 Aligned_cols=48 Identities=13% Similarity=0.275 Sum_probs=34.7
Q ss_pred HHHHHHHHHCCCCEEEEcccCCCCCCCCceeecccc----chHHHHHHHHHHcCcE
Q 006249 59 PDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGR----YDLVKFVKLVAEAGLY 110 (654)
Q Consensus 59 ~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~----~dl~~fl~la~~~GL~ 110 (654)
++.|+.||++|+|.|+. .+..-.+...+.-|+ .++.+.++.+++.|+.
T Consensus 100 ~e~l~~l~~~Gv~risi----GvqS~~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~ 151 (360)
T TIGR00539 100 AEWCKGLKGAGINRLSL----GVQSFRDDKLLFLGRQHSAKNIAPAIETALKSGIE 151 (360)
T ss_pred HHHHHHHHHcCCCEEEE----ecccCChHHHHHhCCCCCHHHHHHHHHHHHHcCCC
Confidence 47789999999999998 333333433433332 3788899999999985
No 290
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=20.53 E-value=1.2e+02 Score=32.91 Aligned_cols=62 Identities=15% Similarity=0.183 Sum_probs=46.6
Q ss_pred CCCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEEec
Q 006249 52 RSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (654)
Q Consensus 52 R~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~ 115 (654)
|.|.-.=....+++|++|-++|-+-+.|+--||.+ -+=.-...++++-+.|+++||..+|.|
T Consensus 101 Rl~~ll~~wS~~rike~GadavK~Llyy~pD~~~~--in~~k~a~vervg~eC~a~dipf~lE~ 162 (324)
T PRK12399 101 RLPDCLDDWSAKRIKEEGADAVKFLLYYDVDEPDE--INEQKKAYIERIGSECVAEDIPFFLEI 162 (324)
T ss_pred CcccccchhhHHHHHHhCCCeEEEEEEECCCCCHH--HHHHHHHHHHHHHHHHHHCCCCeEEEE
Confidence 44443444467889999999999999999887763 111122367899999999999999987
No 291
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=20.48 E-value=3.1e+02 Score=29.18 Aligned_cols=58 Identities=19% Similarity=0.318 Sum_probs=46.0
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccc--cchHHHHHHHHHHcCcEEEEec
Q 006249 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEG--RYDLVKFVKLVAEAGLYAHLRI 115 (654)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g--~~dl~~fl~la~~~GL~Vilr~ 115 (654)
..|+-...-+..|++|.+.++- ..--|+---|+|.| ..-|.-.-+.++++||.|+-+.
T Consensus 57 s~E~i~~~A~~vk~~Ga~~lRG----gafKPRTSPYsFQGlge~gL~~l~~a~~~~Gl~vvtEv 116 (286)
T COG2876 57 SEEQVRETAESVKAAGAKALRG----GAFKPRTSPYSFQGLGEEGLKLLKRAADETGLPVVTEV 116 (286)
T ss_pred CHHHHHHHHHHHHHcchhhccC----CcCCCCCCcccccccCHHHHHHHHHHHHHcCCeeEEEe
Confidence 4566777788899999999998 44567666799986 4677777778889999888775
No 292
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=20.35 E-value=1.8e+02 Score=30.53 Aligned_cols=65 Identities=11% Similarity=0.070 Sum_probs=47.3
Q ss_pred CCCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHH-HcCcEEEEecC
Q 006249 52 RSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVA-EAGLYAHLRIG 116 (654)
Q Consensus 52 R~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~-~~GL~Vilr~G 116 (654)
+.+.+.=.+..+.+-++|++.||+-.+-...+...|..-|.....+.++.++.+ +.-+-+++|++
T Consensus 16 ~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 81 (266)
T cd07944 16 DFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYG 81 (266)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCC
Confidence 457788888999999999999999887776555667777775445556655553 45555677775
No 293
>PLN02231 alanine transaminase
Probab=20.31 E-value=2.9e+02 Score=32.10 Aligned_cols=59 Identities=15% Similarity=0.170 Sum_probs=43.1
Q ss_pred CCCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEEe
Q 006249 52 RSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLR 114 (654)
Q Consensus 52 R~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr 114 (654)
....+..++.++..+..|+++--+++. |-|-|.=-.++=+ .+.+++++|+++|+.+|..
T Consensus 252 ~~d~~~Le~~l~~~~~~~~~~k~ivl~-nP~NPTG~vls~e---~l~~Iv~~a~~~~l~lI~D 310 (534)
T PLN02231 252 GLEISELKKQLEDARSKGITVRALVVI-NPGNPTGQVLAEE---NQRDIVEFCKQEGLVLLAD 310 (534)
T ss_pred CCCHHHHHHHHHHHhhcCCCeEEEEEe-CCCCCCCcCCCHH---HHHHHHHHHHHcCCEEEEE
Confidence 445556666666666667666445554 7788877677666 8999999999999998865
No 294
>PRK13791 lysozyme inhibitor; Provisional
Probab=20.27 E-value=2.3e+02 Score=26.17 Aligned_cols=18 Identities=17% Similarity=0.089 Sum_probs=10.0
Q ss_pred CcchhhHHHHHHHHHHHH
Q 006249 1 MASKEILLLVLCWGFVVL 18 (654)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (654)
|+||.+++..++++++.+
T Consensus 2 ~~mk~~~~~~~~~~ls~~ 19 (113)
T PRK13791 2 MKRKLIPFTLFLAALSAS 19 (113)
T ss_pred chHHHHHHHHHHHHHhhh
Confidence 566666655555554443
No 295
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=20.17 E-value=1.2e+02 Score=30.81 Aligned_cols=63 Identities=13% Similarity=0.138 Sum_probs=45.4
Q ss_pred EeeCC-CCCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeccccchHHHHHHHHHHcCcEEEEec
Q 006249 47 SIHYP-RSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (654)
Q Consensus 47 ~iHy~-R~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~ 115 (654)
...++ +.+.+.....++.+.++|.+.|.+.+.....+ ...-. .++.++.++|++.|+.+|+..
T Consensus 66 ~~i~~p~~~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~~---~~~~~---~~i~~v~~~~~~~g~~~iie~ 129 (235)
T cd00958 66 TSLSPKDDNDKVLVASVEDAVRLGADAVGVTVYVGSEE---EREML---EELARVAAEAHKYGLPLIAWM 129 (235)
T ss_pred CCCCCCCCCchhhhcCHHHHHHCCCCEEEEEEecCCch---HHHHH---HHHHHHHHHHHHcCCCEEEEE
Confidence 33444 77788888889999999999997655544221 11112 378899999999999999854
No 296
>TIGR02804 ExbD_2 TonB system transport protein ExbD, group 2. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=20.12 E-value=6.3e+02 Score=22.98 Aligned_cols=15 Identities=13% Similarity=0.226 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHcCcE
Q 006249 96 DLVKFVKLVAEAGLY 110 (654)
Q Consensus 96 dl~~fl~la~~~GL~ 110 (654)
.+.+.++.|+++|+.
T Consensus 99 ~vv~v~d~~~~~G~~ 113 (121)
T TIGR02804 99 DFVTITDMLKAKEHE 113 (121)
T ss_pred HHHHHHHHHHHcCCC
Confidence 888999999999986
Done!