BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006250
(654 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 79/165 (47%), Gaps = 10/165 (6%)
Query: 139 PPIAANEPILCLIWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLK 198
PP+ A E IL + + +LH E D+ ++ L + ++++++G VP L+K
Sbjct: 201 PPLDAVEQILPTL---VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK 257
Query: 199 LAYEGELEGQENAARAIG--LLGRDAESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAV 256
L EL A RAIG + G D E +++++AG + F L + +Q W +
Sbjct: 258 LLGATELPIVTPALRAIGNIVTGTD-EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM 316
Query: 257 SELASNHPKCQDHFAQNNIVRFLVSHLA---FETVQEHSKYAIAS 298
S + + + +V FLV L+ F+T Q+ + +AI +
Sbjct: 317 SNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKT-QKEAAWAITN 360
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 79/165 (47%), Gaps = 10/165 (6%)
Query: 139 PPIAANEPILCLIWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLK 198
PP+ A E IL + + +LH E D+ ++ L + ++++++G VP L+K
Sbjct: 170 PPLDAVEQILPTL---VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK 226
Query: 199 LAYEGELEGQENAARAIG--LLGRDAESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAV 256
L EL A RAIG + G D E +++++AG + F L + +Q W +
Sbjct: 227 LLGATELPIVTPALRAIGNIVTGTD-EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM 285
Query: 257 SELASNHPKCQDHFAQNNIVRFLVSHLA---FETVQEHSKYAIAS 298
S + + + +V FLV L+ F+T Q+ + +AI +
Sbjct: 286 SNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKT-QKEAAWAITN 329
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 79/165 (47%), Gaps = 10/165 (6%)
Query: 139 PPIAANEPILCLIWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLK 198
PP+ A E IL + + +LH E D+ ++ L + ++++++G VP L+K
Sbjct: 175 PPLDAVEQILPTL---VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK 231
Query: 199 LAYEGELEGQENAARAIG--LLGRDAESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAV 256
L EL A RAIG + G D E +++++AG + F L + +Q W +
Sbjct: 232 LLGATELPIVTPALRAIGNIVTGTD-EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM 290
Query: 257 SELASNHPKCQDHFAQNNIVRFLVSHLA---FETVQEHSKYAIAS 298
S + + + +V FLV L+ F+T Q+ + +AI +
Sbjct: 291 SNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKT-QKEAAWAITN 334
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 79/165 (47%), Gaps = 10/165 (6%)
Query: 139 PPIAANEPILCLIWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLK 198
PP+ A E IL + + +LH E D+ ++ L + ++++++G VP L+K
Sbjct: 170 PPLDAVEQILPTL---VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK 226
Query: 199 LAYEGELEGQENAARAIG--LLGRDAESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAV 256
L EL A RAIG + G D E +++++AG + F L + +Q W +
Sbjct: 227 LLGATELPIVTPALRAIGNIVTGTD-EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM 285
Query: 257 SELASNHPKCQDHFAQNNIVRFLVSHLA---FETVQEHSKYAIAS 298
S + + + +V FLV L+ F+T Q+ + +AI +
Sbjct: 286 SNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKT-QKEAAWAITN 329
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 79/165 (47%), Gaps = 10/165 (6%)
Query: 139 PPIAANEPILCLIWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLK 198
PP+ A E IL + + +LH E D+ ++ L + ++++++G VP L+K
Sbjct: 174 PPLDAVEQILPTL---VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK 230
Query: 199 LAYEGELEGQENAARAIG--LLGRDAESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAV 256
L EL A RAIG + G D E +++++AG + F L + +Q W +
Sbjct: 231 LLGATELPIVTPALRAIGNIVTGTD-EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM 289
Query: 257 SELASNHPKCQDHFAQNNIVRFLVSHLA---FETVQEHSKYAIAS 298
S + + + +V FLV L+ F+T Q+ + +AI +
Sbjct: 290 SNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKT-QKEAAWAITN 333
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 79/165 (47%), Gaps = 10/165 (6%)
Query: 139 PPIAANEPILCLIWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLK 198
PP+ A E IL + + +LH E D+ ++ L + ++++++G VP L+K
Sbjct: 174 PPLDAVEQILPTL---VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK 230
Query: 199 LAYEGELEGQENAARAIG--LLGRDAESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAV 256
L EL A RAIG + G D E +++++AG + F L + +Q W +
Sbjct: 231 LLGATELPIVTPALRAIGNIVTGTD-EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM 289
Query: 257 SELASNHPKCQDHFAQNNIVRFLVSHLA---FETVQEHSKYAIAS 298
S + + + +V FLV L+ F+T Q+ + +AI +
Sbjct: 290 SNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKT-QKEAAWAITN 333
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 79/165 (47%), Gaps = 10/165 (6%)
Query: 139 PPIAANEPILCLIWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLK 198
PP+ A E IL + + +LH E D+ ++ L + ++++++G VP L+K
Sbjct: 175 PPLDAVEQILPTL---VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK 231
Query: 199 LAYEGELEGQENAARAIG--LLGRDAESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAV 256
L EL A RAIG + G D E +++++AG + F L + +Q W +
Sbjct: 232 LLGATELPIVTPALRAIGNIVTGTD-EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM 290
Query: 257 SELASNHPKCQDHFAQNNIVRFLVSHLA---FETVQEHSKYAIAS 298
S + + + +V FLV L+ F+T Q+ + +AI +
Sbjct: 291 SNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKT-QKEAAWAITN 334
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 79/165 (47%), Gaps = 10/165 (6%)
Query: 139 PPIAANEPILCLIWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLK 198
PP+ A E IL + + +LH E D+ ++ L + ++++++G VP L+K
Sbjct: 209 PPLDAVEQILPTL---VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK 265
Query: 199 LAYEGELEGQENAARAIG--LLGRDAESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAV 256
L EL A RAIG + G D E +++++AG + F L + +Q W +
Sbjct: 266 LLGATELPIVTPALRAIGNIVTGTD-EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM 324
Query: 257 SELASNHPKCQDHFAQNNIVRFLVSHLA---FETVQEHSKYAIAS 298
S + + + +V FLV L+ F+T Q+ + +AI +
Sbjct: 325 SNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKT-QKEAAWAITN 368
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 79/166 (47%), Gaps = 12/166 (7%)
Query: 139 PPIAANEPILCLIWEQIAILHTGSMEEKCDAAASLVSLARD-NDRYGKLIIEEGGVPPLL 197
PPI A E IL + + +LH E D ++ L N+R G ++++ G VP L+
Sbjct: 176 PPIDAVEQILPTL---VRLLHHDDPEVLADTCWAISYLTDGPNERIG-MVVKTGVVPQLV 231
Query: 198 KLAYEGELEGQENAARAIG--LLGRDAESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWA 255
KL EL A RAIG + G D E + +++AG + F L + +Q W
Sbjct: 232 KLLGASELPIVTPALRAIGNIVTGTD-EQTQVVIDAGALAVFPSLLTNPKTNIQKEATWT 290
Query: 256 VSELASNHPKCQDHFAQNNIVRFLVSHLA---FETVQEHSKYAIAS 298
+S + + + +V FLVS L+ F+T Q+ + +A+ +
Sbjct: 291 MSNITAGRQDQIQQVVNHGLVPFLVSVLSKADFKT-QKEAVWAVTN 335
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 79/165 (47%), Gaps = 10/165 (6%)
Query: 139 PPIAANEPILCLIWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLK 198
PP+ A E IL + + +LH E D+ ++ L + ++++++G VP L+K
Sbjct: 175 PPLDAVEQILPTL---VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK 231
Query: 199 LAYEGELEGQENAARAIG--LLGRDAESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAV 256
L EL A RAIG + G D E +++++AG + F L + +Q W +
Sbjct: 232 LLGATELPIVTPALRAIGNIVTGTD-EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM 290
Query: 257 SELASNHPKCQDHFAQNNIVRFLVSHLA---FETVQEHSKYAIAS 298
S + + + +V FLV L+ F+T Q+ + +AI +
Sbjct: 291 SNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKT-QKEAAWAITN 334
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 79/165 (47%), Gaps = 10/165 (6%)
Query: 139 PPIAANEPILCLIWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLK 198
PP+ A E IL + + +LH E D+ ++ L + ++++++G VP L+K
Sbjct: 225 PPLDAVEQILPTL---VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK 281
Query: 199 LAYEGELEGQENAARAIG--LLGRDAESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAV 256
L EL A RAIG + G D E +++++AG + F L + +Q W +
Sbjct: 282 LLGATELPIVTPALRAIGNIVTGTD-EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM 340
Query: 257 SELASNHPKCQDHFAQNNIVRFLVSHLA---FETVQEHSKYAIAS 298
S + + + +V FLV L+ F+T Q+ + +AI +
Sbjct: 341 SNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKT-QKEAAWAITN 384
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 79/165 (47%), Gaps = 10/165 (6%)
Query: 139 PPIAANEPILCLIWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLK 198
PP+ A E IL + + +LH E D+ ++ L + ++++++G VP L+K
Sbjct: 181 PPLDAVEQILPTL---VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK 237
Query: 199 LAYEGELEGQENAARAIG--LLGRDAESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAV 256
L EL A RAIG + G D E +++++AG + F L + +Q W +
Sbjct: 238 LLGATELPIVTPALRAIGNIVTGTD-EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM 296
Query: 257 SELASNHPKCQDHFAQNNIVRFLVSHLA---FETVQEHSKYAIAS 298
S + + + +V FLV L+ F+T Q+ + +AI +
Sbjct: 297 SNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKT-QKEAAWAITN 340
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 79/165 (47%), Gaps = 10/165 (6%)
Query: 139 PPIAANEPILCLIWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLK 198
PP+ A E IL + + +LH E D+ ++ L + ++++++G VP L+K
Sbjct: 244 PPLDAVEQILPTL---VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK 300
Query: 199 LAYEGELEGQENAARAIG--LLGRDAESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAV 256
L EL A RAIG + G D E +++++AG + F L + +Q W +
Sbjct: 301 LLGATELPIVTPALRAIGNIVTGTD-EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM 359
Query: 257 SELASNHPKCQDHFAQNNIVRFLVSHLA---FETVQEHSKYAIAS 298
S + + + +V FLV L+ F+T Q+ + +AI +
Sbjct: 360 SNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKT-QKAAAWAITN 403
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 79/165 (47%), Gaps = 10/165 (6%)
Query: 139 PPIAANEPILCLIWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLK 198
PP+ A E IL + + +LH E D+ ++ L + ++++++G VP L+K
Sbjct: 225 PPLDAVEQILPTL---VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK 281
Query: 199 LAYEGELEGQENAARAIG--LLGRDAESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAV 256
L EL A RAIG + G D E +++++AG + F L + +Q W +
Sbjct: 282 LLGATELPIVTPALRAIGNIVTGTD-EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM 340
Query: 257 SELASNHPKCQDHFAQNNIVRFLVSHLA---FETVQEHSKYAIAS 298
S + + + +V FLV L+ F+T Q+ + +AI +
Sbjct: 341 SNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKT-QKEAAWAITN 384
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 79/165 (47%), Gaps = 10/165 (6%)
Query: 139 PPIAANEPILCLIWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLK 198
PP+ A E IL + + +LH E D+ ++ L + ++++++G VP L+K
Sbjct: 225 PPLDAVEQILPTL---VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK 281
Query: 199 LAYEGELEGQENAARAIG--LLGRDAESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAV 256
L EL A RAIG + G D E +++++AG + F L + +Q W +
Sbjct: 282 LLGATELPIVTPALRAIGNIVTGTD-EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM 340
Query: 257 SELASNHPKCQDHFAQNNIVRFLVSHLA---FETVQEHSKYAIAS 298
S + + + +V FLV L+ F+T Q+ + +AI +
Sbjct: 341 SNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKT-QKEAAWAITN 384
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 79/165 (47%), Gaps = 10/165 (6%)
Query: 139 PPIAANEPILCLIWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLK 198
PP+ A E IL + + +LH E D+ ++ L + ++++++G VP L+K
Sbjct: 211 PPLDAVEQILPTL---VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK 267
Query: 199 LAYEGELEGQENAARAIG--LLGRDAESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAV 256
L EL A RAIG + G D E +++++AG + F L + +Q W +
Sbjct: 268 LLGATELPIVTPALRAIGNIVTGTD-EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM 326
Query: 257 SELASNHPKCQDHFAQNNIVRFLVSHLA---FETVQEHSKYAIAS 298
S + + + +V FLV L+ F+T Q+ + +AI +
Sbjct: 327 SNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKT-QKEAAWAITN 370
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 73/152 (48%), Gaps = 4/152 (2%)
Query: 155 IAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARA 214
+ +L + E + +AA +L ++A D K I++ GGV L+KL + E Q+ AARA
Sbjct: 50 VKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARA 109
Query: 215 IGLL--GRDAESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQ 272
+ + G D E+++ IV+AG K L +VQ A A++ +AS +
Sbjct: 110 LANIASGPD-EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVD 168
Query: 273 NNIVRFLVSHLAFETVQEHSKYAIASKQNISS 304
V LV L T E K A + NI+S
Sbjct: 169 AGGVEVLV-KLLTSTDSEVQKEAARALANIAS 199
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 70/152 (46%), Gaps = 4/152 (2%)
Query: 155 IAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARA 214
+ +L + E + +AA L +A K I++ GGV L+KL + E Q+ AARA
Sbjct: 8 VKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARA 67
Query: 215 IGLL--GRDAESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQ 272
+ + G D E+++ IV+AG K L +VQ A A++ +AS +
Sbjct: 68 LANIASGPD-EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVD 126
Query: 273 NNIVRFLVSHLAFETVQEHSKYAIASKQNISS 304
V LV L T E K A + NI+S
Sbjct: 127 AGGVEVLV-KLLTSTDSEVQKEAARALANIAS 157
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 87/190 (45%), Gaps = 18/190 (9%)
Query: 415 AARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDL 474
AAR L +++ G S + + ++ + LL +V+ +A AL I + ++
Sbjct: 22 AARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE---- 77
Query: 475 RRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLA----RTFRA-TETRIIGP 529
A K A +E L+ ++ DS++ + RA+ N+A +A + +
Sbjct: 78 ---AIKAIVDAGG--VEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEV 132
Query: 530 LVNLLDEREPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQI 589
LV LL + EV EA AL A+ + KAI++AGGV+ L++L+ + +Q
Sbjct: 133 LVKLLTSTDSEVQKEAARALANIASGPDE----AIKAIVDAGGVEVLVKLLTSTDSEVQK 188
Query: 590 PALTLLCYIA 599
A L IA
Sbjct: 189 EAARALANIA 198
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 15/141 (10%)
Query: 469 EKNSDLRRSAFKPTSTAAKAVL-----EQLLHIVEKADSDLLIPSIRAIGNLA----RTF 519
E DL A P S A KA++ E L+ ++ DS++ + RA+ N+A
Sbjct: 21 EAARDLAEIASGPAS-AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI 79
Query: 520 RA-TETRIIGPLVNLLDEREPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQ 578
+A + + LV LL + EV EA AL A+ + KAI++AGGV+ L++
Sbjct: 80 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE----AIKAIVDAGGVEVLVK 135
Query: 579 LVYFGEQMIQIPALTLLCYIA 599
L+ + +Q A L IA
Sbjct: 136 LLTSTDSEVQKEAARALANIA 156
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 18/179 (10%)
Query: 415 AARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDL 474
AARAL ++ G + + ++ + LL +V+ +A AL I + ++
Sbjct: 64 AARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE---- 119
Query: 475 RRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLA----RTFRA-TETRIIGP 529
A K A +E L+ ++ DS++ + RA+ N+A +A + +
Sbjct: 120 ---AIKAIVDAGG--VEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEV 174
Query: 530 LVNLLDEREPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQ 588
LV LL + EV EA AL A+ + KAI++AGGV+ L +L+ + +Q
Sbjct: 175 LVKLLTSTDSEVQKEAARALANIASGPT----SAIKAIVDAGGVEVLQKLLTSTDSEVQ 229
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 560 SETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIAIKQPESKTLAQEEVL 614
S+T AII + G+ HLI LV F ++++ + LT+ IA + P SK AQ VL
Sbjct: 4 SKTPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSK--AQRTVL 56
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 7/112 (6%)
Query: 187 IIEEGGVPPLLK-LAYEGELEGQENAARAI-GLLGRDAESVEQIVNAGVCSTFAKNLKDG 244
+I+ G VP ++ L E + Q AA A+ + +E+ + +++ G F K L
Sbjct: 113 VIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSS 172
Query: 245 HMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAI 296
V+ WA+ +A + PKC+D N + L++ L EH+K ++
Sbjct: 173 SDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQL-----NEHTKLSM 219
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 81/191 (42%), Gaps = 24/191 (12%)
Query: 410 QMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAE 469
Q++ AA AL ++ G + + + A+ F LL +DV+ + AL + +
Sbjct: 133 QLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSP 192
Query: 470 KNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLAR-----TFRATET 524
K DL A A+L L + E +L + + N R +F T
Sbjct: 193 KCRDL--------VLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRP 244
Query: 525 RIIGPLVNLLDEREPEVIMEATVALNKFATTENYLSE-THSK--AIINAGGVKHLIQLVY 581
+ L L+ + EV+ +A AL+ YLS+ T+ K A+I AG L++L+
Sbjct: 245 ALPA-LARLIHSNDEEVLTDACWALS-------YLSDGTNDKIQAVIEAGVCPRLVELLL 296
Query: 582 FGEQMIQIPAL 592
+ IPAL
Sbjct: 297 HPSPSVLIPAL 307
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 4/107 (3%)
Query: 168 DAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQ 227
+AA +L ++A K++I+ G VP +KL + +E A A+G + D+
Sbjct: 137 EAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRD 196
Query: 228 IV--NAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQ 272
+V N + A+ + + + W +S P Q F Q
Sbjct: 197 LVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKP--QPSFEQ 241
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 526 IIGPLVNLLDEREPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQ 585
IIGPLVNLL E ++ EA A++ AT+ S K +++ G +K L L+ +
Sbjct: 372 IIGPLVNLLQTAEFDIKKEAAWAISN-ATSGG--SHDQIKYLVSEGCIKPLCDLLICPDI 428
Query: 586 MIQIPALTLLCYIAIKQPESKTLAQEEV 613
I L L I KTLA +V
Sbjct: 429 RIVTVCLEGLENILKVGETDKTLAAGDV 456
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 7/112 (6%)
Query: 187 IIEEGGVPPLLK-LAYEGELEGQENAARAI-GLLGRDAESVEQIVNAGVCSTFAKNLKDG 244
+I+ G VP ++ L E + Q AA A+ + +E+ + +++ G F K L
Sbjct: 75 VIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSS 134
Query: 245 HMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAI 296
V+ WA+ +A + PKC+D N + L++ L EH+K ++
Sbjct: 135 SDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQL-----NEHTKLSM 181
Score = 35.8 bits (81), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 83/192 (43%), Gaps = 26/192 (13%)
Query: 410 QMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAE 469
Q++ AA AL ++ G + + + A+ F LL +DV+ + AL + +
Sbjct: 95 QLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSP 154
Query: 470 KNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLAR-----TFRATET 524
K DL A A+L L + E +L + + N R +F +T
Sbjct: 155 KCRDL--------VLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFE--QT 204
Query: 525 RIIGP-LVNLLDEREPEVIMEATVALNKFATTENYLSE-THSK--AIINAGGVKHLIQLV 580
R P L L+ + EV+ +A AL+ YLS+ T+ K A+I AG L++L+
Sbjct: 205 RPALPALARLIHSNDEEVLTDACWALS-------YLSDGTNDKIQAVIEAGVCPRLVELL 257
Query: 581 YFGEQMIQIPAL 592
+ IPAL
Sbjct: 258 LHPSPSVLIPAL 269
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 43/100 (43%), Gaps = 2/100 (2%)
Query: 168 DAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQ 227
+AA +L ++A K++I+ G VP +KL + +E A A+G + D+
Sbjct: 99 EAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRD 158
Query: 228 IV--NAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPK 265
+V N + A+ + + + W +S P+
Sbjct: 159 LVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQ 198
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 526 IIGPLVNLLDEREPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQ 585
IIGPLVNLL E ++ EA A++ AT+ S K +++ G +K L L+ +
Sbjct: 334 IIGPLVNLLQTAEFDIKKEAAWAISN-ATSGG--SHDQIKYLVSEGCIKPLCDLLICPDI 390
Query: 586 MIQIPALTLLCYIAIKQPESKTLAQEEV 613
I L L I KTLA +V
Sbjct: 391 RIVTVCLEGLENILKVGETDKTLAAGDV 418
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%)
Query: 168 DAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDA 222
+AA +L ++A K++++ VP ++L Y G +E +E A A+G + D+
Sbjct: 64 EAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDS 118
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 526 IIGPLVNLLDEREPEVI-MEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFG 583
++ LV + E +PE++ +EA AL A+ + +K +++A V IQL+Y G
Sbjct: 45 VVPRLVEFMRENQPEMLQLEAAWALTNIASG----TSAQTKVVVDADAVPLFIQLLYTG 99
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 82/186 (44%), Gaps = 24/186 (12%)
Query: 415 AARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDL 474
AA AL ++ G + + + ++ A+ F LL G +VK A+ + VA ++D
Sbjct: 65 AAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKE---QAIWALGNVAGDSTDY 121
Query: 475 RRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFR-----ATETRIIGP 529
R + + +E +L + L+ + + NL R + + ++ +
Sbjct: 122 RDYVLQCNA------MEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPT 175
Query: 530 LVNLLDEREPEVIMEATVALNKFATTENYLSETHSKAI---INAGGVKHLIQLVYFGEQM 586
L L+ + E +++A A++ YLS+ +AI I+ K L++L+ +
Sbjct: 176 LAKLIYSMDTETLVDACWAIS-------YLSDGPQEAIQAVIDVRIPKRLVELLSHESTL 228
Query: 587 IQIPAL 592
+Q PAL
Sbjct: 229 VQTPAL 234
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 46/104 (44%), Gaps = 7/104 (6%)
Query: 180 NDRYGKLIIEEGGVPPL-LKLAYEGELEGQENAARAIGLLGRDAESVEQIVNAGVCSTFA 238
ND +++I G +P L L L+ E +E + + E ++ +++A +
Sbjct: 244 NDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLV 303
Query: 239 KNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSH 282
K L+ K + WA+S +S + +I+R+LVS
Sbjct: 304 KLLEVAEDKTKKEACWAISNASSG------GLQRPDIIRYLVSQ 341
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%)
Query: 168 DAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDA 222
+AA +L ++A K++++ VP ++L Y G +E +E A A+G + D+
Sbjct: 62 EAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDS 116
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 526 IIGPLVNLLDEREPEVI-MEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFG 583
++ LV + E +PE++ +EA AL A+ + +K +++A V IQL+Y G
Sbjct: 43 VVPRLVEFMRENQPEMLQLEAAWALTNIASG----TSAQTKVVVDADAVPLFIQLLYTG 97
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 46/104 (44%), Gaps = 7/104 (6%)
Query: 180 NDRYGKLIIEEGGVPPL-LKLAYEGELEGQENAARAIGLLGRDAESVEQIVNAGVCSTFA 238
ND +++I G +P L L L+ E +E + + E ++ +++A +
Sbjct: 242 NDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLV 301
Query: 239 KNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSH 282
K L+ K + WA+S +S + +I+R+LVS
Sbjct: 302 KLLEVAEYKTKKEACWAISNASSG------GLQRPDIIRYLVSQ 339
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 82/186 (44%), Gaps = 24/186 (12%)
Query: 415 AARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDL 474
AA AL ++ G + + + ++ A+ F LL G +VK A+ + VA ++D
Sbjct: 63 AAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKE---QAIWALGNVAGDSTDY 119
Query: 475 RRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFR-----ATETRIIGP 529
R + + +E +L + L+ + + NL R + + ++ +
Sbjct: 120 RDYVLQCNA------MEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPT 173
Query: 530 LVNLLDEREPEVIMEATVALNKFATTENYLSETHSKAI---INAGGVKHLIQLVYFGEQM 586
L L+ + E +++A A++ YLS+ +AI I+ K L++L+ +
Sbjct: 174 LAKLIYSMDTETLVDACWAIS-------YLSDGPQEAIQAVIDVRIPKRLVELLSHESTL 226
Query: 587 IQIPAL 592
+Q PAL
Sbjct: 227 VQTPAL 232
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 526 IIGPLVNLLDEREPEVI-MEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGE 584
++ LV + E +PE++ +EA AL A+ + +K +++A V IQL+Y G
Sbjct: 131 VVPRLVEFMRENQPEMLQLEAAWALTNIASG----TSAQTKVVVDADAVPLFIQLLYTGS 186
Query: 585 QMIQIPALTLLCYIA 599
++ A+ L +A
Sbjct: 187 VEVKEQAIWALGNVA 201
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 32/62 (51%)
Query: 168 DAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQ 227
+AA +L ++A K++++ VP ++L Y G +E +E A A+G + D+
Sbjct: 150 EAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRD 209
Query: 228 IV 229
V
Sbjct: 210 YV 211
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 82/186 (44%), Gaps = 24/186 (12%)
Query: 415 AARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDL 474
AA AL ++ G + + + ++ A+ F LL G +VK A+ + VA ++D
Sbjct: 151 AAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKE---QAIWALGNVAGDSTDY 207
Query: 475 RRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFR-----ATETRIIGP 529
R + + +E +L + L+ + + NL R + + ++ +
Sbjct: 208 RDYVLQCNA------MEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPT 261
Query: 530 LVNLLDEREPEVIMEATVALNKFATTENYLSETHSKAI---INAGGVKHLIQLVYFGEQM 586
L L+ + E +++A A++ YLS+ +AI I+ K L++L+ +
Sbjct: 262 LAKLIYSMDTETLVDACWAIS-------YLSDGPQEAIQAVIDVRIPKRLVELLSHESTL 314
Query: 587 IQIPAL 592
+Q PAL
Sbjct: 315 VQTPAL 320
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 46/104 (44%), Gaps = 7/104 (6%)
Query: 180 NDRYGKLIIEEGGVPPL-LKLAYEGELEGQENAARAIGLLGRDAESVEQIVNAGVCSTFA 238
ND +++I G +P L L L+ E +E + + E ++ +++A +
Sbjct: 330 NDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLV 389
Query: 239 KNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSH 282
K L+ K + WA+S +S + +I+R+LVS
Sbjct: 390 KLLEVAEYKTKKEACWAISNASSG------GLQRPDIIRYLVSQ 427
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%)
Query: 168 DAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDA 222
+AA +L ++A K++++ VP ++L Y G +E +E A A+G + D+
Sbjct: 62 EAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDS 116
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 526 IIGPLVNLLDEREPEVI-MEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFG 583
++ LV + E +PE++ +EA AL A+ + +K +++A V IQL+Y G
Sbjct: 43 VVPRLVEFMRENQPEMLQLEAAWALTNIASG----TSAQTKVVVDADAVPLFIQLLYTG 97
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 46/104 (44%), Gaps = 7/104 (6%)
Query: 180 NDRYGKLIIEEGGVPPL-LKLAYEGELEGQENAARAIGLLGRDAESVEQIVNAGVCSTFA 238
ND +++I G +P L L L+ E +E + + E ++ +++A +
Sbjct: 242 NDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLV 301
Query: 239 KNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSH 282
K L+ K + WA+S +S + +I+R+LVS
Sbjct: 302 KLLEVAEYKTKKEACWAISNASSG------GLQRPDIIRYLVSQ 339
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 82/186 (44%), Gaps = 24/186 (12%)
Query: 415 AARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDL 474
AA AL ++ G + + + ++ A+ F LL G +VK A+ + VA ++D
Sbjct: 63 AAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKE---QAIWALGNVAGDSTDY 119
Query: 475 RRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFR-----ATETRIIGP 529
R + + +E +L + L+ + + NL R + + ++ +
Sbjct: 120 RDYVLQCNA------MEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPT 173
Query: 530 LVNLLDEREPEVIMEATVALNKFATTENYLSETHSKAI---INAGGVKHLIQLVYFGEQM 586
L L+ + E +++A A++ YLS+ +AI I+ K L++L+ +
Sbjct: 174 LAKLIYSMDTETLVDACWAIS-------YLSDGPQEAIQAVIDVRIPKRLVELLSHESTL 226
Query: 587 IQIPAL 592
+Q PAL
Sbjct: 227 VQTPAL 232
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%)
Query: 168 DAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDA 222
+AA +L ++A K++++ VP ++L Y G +E +E A A+G + D+
Sbjct: 64 EAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDS 118
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 526 IIGPLVNLLDEREPEVI-MEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFG 583
++ LV + E +PE++ +EA AL A+ + +K +++A V IQL+Y G
Sbjct: 45 VVPRLVEFMRENQPEMLQLEAAWALTNIASG----TSAQTKVVVDADAVPLFIQLLYTG 99
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 82/186 (44%), Gaps = 24/186 (12%)
Query: 415 AARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDL 474
AA AL ++ G + + + ++ A+ F LL G +VK A+ + VA ++D
Sbjct: 65 AAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKE---QAIWALGNVAGDSTDY 121
Query: 475 RRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFR-----ATETRIIGP 529
R + + +E +L + L+ + + NL R + + ++ +
Sbjct: 122 RDYVLQCNA------MEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPT 175
Query: 530 LVNLLDEREPEVIMEATVALNKFATTENYLSETHSKAI---INAGGVKHLIQLVYFGEQM 586
L L+ + E +++A A++ YLS+ +AI I+ K L++L+ +
Sbjct: 176 LAKLIYSMDTETLVDACWAIS-------YLSDGPQEAIQAVIDVRIPKRLVELLSHESTL 228
Query: 587 IQIPAL 592
+Q PAL
Sbjct: 229 VQTPAL 234
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 46/104 (44%), Gaps = 7/104 (6%)
Query: 180 NDRYGKLIIEEGGVPPL-LKLAYEGELEGQENAARAIGLLGRDAESVEQIVNAGVCSTFA 238
ND +++I G +P L L L+ E +E + + E ++ +++A +
Sbjct: 244 NDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLV 303
Query: 239 KNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSH 282
K L+ K + WA+S +S + +I+R+LVS
Sbjct: 304 KLLEVAEDKTKKEACWAISNASSG------GLQRPDIIRYLVSQ 341
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%)
Query: 168 DAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDA 222
+AA +L ++A K++++ VP ++L Y G +E +E A A+G + D+
Sbjct: 63 EAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDS 117
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 526 IIGPLVNLLDEREPEVI-MEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGE 584
++ LV + E +PE++ +EA AL A+ + +K +++A V IQL+Y G
Sbjct: 44 VVPRLVEFMRENQPEMLQLEAAWALTNIASG----TSAQTKVVVDADAVPLFIQLLYTGS 99
Query: 585 QMIQIPALTLLCYIA 599
++ A+ L +A
Sbjct: 100 VEVKEQAIWALGNVA 114
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 82/186 (44%), Gaps = 24/186 (12%)
Query: 415 AARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDL 474
AA AL ++ G + + + ++ A+ F LL G +VK A+ + VA ++D
Sbjct: 64 AAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKE---QAIWALGNVAGDSTDY 120
Query: 475 RRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFR-----ATETRIIGP 529
R + + +E +L + L+ + + NL R + + ++ +
Sbjct: 121 RDYVLQCNA------MEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPT 174
Query: 530 LVNLLDEREPEVIMEATVALNKFATTENYLSETHSKAI---INAGGVKHLIQLVYFGEQM 586
L L+ + E +++A A++ YLS+ +AI I+ K L++L+ +
Sbjct: 175 LAKLIYSMDTETLVDACWAIS-------YLSDGPQEAIQAVIDVRIPKRLVELLSHESTL 227
Query: 587 IQIPAL 592
+Q PAL
Sbjct: 228 VQTPAL 233
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%)
Query: 168 DAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDA 222
+AA +L ++A K++++ VP ++L Y G +E +E A A+G + D+
Sbjct: 63 EAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDS 117
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 526 IIGPLVNLLDEREPEVI-MEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGE 584
++ LV + E +PE++ +EA AL A+ + +K +++A V IQL+Y G
Sbjct: 44 VVPRLVEFMRENQPEMLQLEAAWALTNIASG----TSAQTKVVVDADAVPLFIQLLYTGS 99
Query: 585 QMIQIPALTLLCYIA 599
++ A+ L +A
Sbjct: 100 VEVKEQAIWALGNVA 114
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 82/186 (44%), Gaps = 24/186 (12%)
Query: 415 AARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDL 474
AA AL ++ G + + + ++ A+ F LL G +VK A+ + VA ++D
Sbjct: 64 AAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKE---QAIWALGNVAGDSTDY 120
Query: 475 RRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFR-----ATETRIIGP 529
R + + +E +L + L+ + + NL R + + ++ +
Sbjct: 121 RDYVLQCNA------MEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPT 174
Query: 530 LVNLLDEREPEVIMEATVALNKFATTENYLSETHSKAI---INAGGVKHLIQLVYFGEQM 586
L L+ + E +++A A++ YLS+ +AI I+ K L++L+ +
Sbjct: 175 LAKLIYSMDTETLVDACWAIS-------YLSDGPQEAIQAVIDVRIPKRLVELLSHESTL 227
Query: 587 IQIPAL 592
+Q PAL
Sbjct: 228 VQTPAL 233
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 46/104 (44%), Gaps = 7/104 (6%)
Query: 180 NDRYGKLIIEEGGVPPL-LKLAYEGELEGQENAARAIGLLGRDAESVEQIVNAGVCSTFA 238
ND +++I G +P L L L+ E +E + + E ++ +++A +
Sbjct: 243 NDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLV 302
Query: 239 KNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSH 282
K L+ K + WA+S +S + +I+R+LVS
Sbjct: 303 KLLEVAEDKTKKEACWAISNASSG------GLQRPDIIRYLVSQ 340
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 9/124 (7%)
Query: 493 LLHIVEKADSDLLIPSIRAIGNLARTFRATETRIIGP-----LVNLLDEREPEVIMEATV 547
L+ ++ + +L ++ A+ N+A +I LV LL +++ EA
Sbjct: 59 LVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 118
Query: 548 ALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIAIKQPESKT 607
AL+ A+ N +A+I+AG + L+QL+ + I AL L IA E K
Sbjct: 119 ALSNIASGGN----EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQ 174
Query: 608 LAQE 611
+E
Sbjct: 175 AVKE 178
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 9/124 (7%)
Query: 493 LLHIVEKADSDLLIPSIRAIGNLARTFRATETRIIGP-----LVNLLDEREPEVIMEATV 547
L+ ++ + +L ++ A+ N+A +I LV LL +++ EA
Sbjct: 101 LVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 160
Query: 548 ALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIAIKQPESKT 607
AL+ A+ N +A+I+AG + L+QL+ + I AL L IA E K
Sbjct: 161 ALSNIASGGN----EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQ 216
Query: 608 LAQE 611
+E
Sbjct: 217 AVKE 220
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 9/124 (7%)
Query: 493 LLHIVEKADSDLLIPSIRAIGNLARTFRATETRIIGP-----LVNLLDEREPEVIMEATV 547
L+ ++ + +L ++ A+ N+A +I LV LL +++ EA
Sbjct: 59 LVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 118
Query: 548 ALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIAIKQPESKT 607
AL+ A+ N +A+I+AG + L+QL+ + I AL L IA E K
Sbjct: 119 ALSNIASGGN----EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQ 174
Query: 608 LAQE 611
+E
Sbjct: 175 AVKE 178
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 9/124 (7%)
Query: 493 LLHIVEKADSDLLIPSIRAIGNLARTFRATETRIIGP-----LVNLLDEREPEVIMEATV 547
L+ ++ + +L ++ A+ N+A +I LV LL +++ EA
Sbjct: 59 LVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 118
Query: 548 ALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIAIKQPESKT 607
AL+ A+ N +A+I+AG + L+QL+ + I AL L IA E K
Sbjct: 119 ALSNIASGGN----EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQ 174
Query: 608 LAQE 611
+E
Sbjct: 175 AVKE 178
>pdb|3ZBH|A Chain A, Geobacillus Thermodenitrificans Esxa Crystal Form I
pdb|3ZBH|B Chain B, Geobacillus Thermodenitrificans Esxa Crystal Form I
pdb|3ZBH|C Chain C, Geobacillus Thermodenitrificans Esxa Crystal Form I
pdb|3ZBH|D Chain D, Geobacillus Thermodenitrificans Esxa Crystal Form I
pdb|3ZBH|E Chain E, Geobacillus Thermodenitrificans Esxa Crystal Form I
pdb|3ZBH|F Chain F, Geobacillus Thermodenitrificans Esxa Crystal Form I
pdb|3ZBH|G Chain G, Geobacillus Thermodenitrificans Esxa Crystal Form I
pdb|3ZBH|H Chain H, Geobacillus Thermodenitrificans Esxa Crystal Form I
Length = 99
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 12 LARNIQLADTITKIANEAQS--FKQDCQELQAKTEKLAVLLRQVAR 55
+AR Q++ T+ I A S F Q QEL+ EK+AVLL +V +
Sbjct: 32 IARLDQMSHTLQGIWEGASSEAFIQQYQELRPSFEKMAVLLNEVGQ 77
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
Length = 447
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 228 IVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIV 276
++ AG F + L VQ WA+ +A + C+D+ NI+
Sbjct: 100 VIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNIL 148
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
Length = 450
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 228 IVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIV 276
++ AG F + L VQ WA+ +A + C+D+ NI+
Sbjct: 103 VIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNIL 151
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.129 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,269,785
Number of Sequences: 62578
Number of extensions: 577709
Number of successful extensions: 1500
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1313
Number of HSP's gapped (non-prelim): 183
length of query: 654
length of database: 14,973,337
effective HSP length: 105
effective length of query: 549
effective length of database: 8,402,647
effective search space: 4613053203
effective search space used: 4613053203
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)