Query 006250
Match_columns 654
No_of_seqs 417 out of 1636
Neff 7.1
Searched_HMMs 46136
Date Thu Mar 28 20:32:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006250.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006250hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5064 SRP1 Karyopherin (impo 100.0 5.6E-50 1.2E-54 405.5 17.3 402 155-650 77-498 (526)
2 KOG0166 Karyopherin (importin) 100.0 1E-47 2.2E-52 416.9 27.8 396 155-650 72-488 (514)
3 PLN03200 cellulose synthase-in 100.0 1.4E-38 3.1E-43 388.0 36.6 518 74-650 30-725 (2102)
4 PLN03200 cellulose synthase-in 100.0 1.2E-36 2.7E-41 371.1 38.1 441 82-619 171-742 (2102)
5 COG5064 SRP1 Karyopherin (impo 100.0 4.4E-30 9.4E-35 261.1 27.2 430 3-596 36-492 (526)
6 KOG0166 Karyopherin (importin) 100.0 2.4E-29 5.1E-34 273.8 32.6 383 78-596 85-482 (514)
7 KOG4224 Armadillo repeat prote 99.9 6E-26 1.3E-30 232.7 22.4 317 155-610 132-456 (550)
8 KOG4224 Armadillo repeat prote 99.9 2.2E-26 4.8E-31 235.9 18.4 344 155-636 91-442 (550)
9 PF05804 KAP: Kinesin-associat 99.8 1.1E-17 2.4E-22 191.8 35.0 372 167-647 267-651 (708)
10 PF05804 KAP: Kinesin-associat 99.7 8.8E-16 1.9E-20 176.2 31.4 348 155-604 296-653 (708)
11 KOG1048 Neural adherens juncti 99.6 8.1E-14 1.8E-18 157.1 24.1 350 154-618 238-660 (717)
12 PRK09687 putative lyase; Provi 99.6 1.4E-13 3.1E-18 143.9 22.0 248 154-595 28-277 (280)
13 KOG1048 Neural adherens juncti 99.5 2.6E-13 5.6E-18 153.1 18.8 388 103-584 234-667 (717)
14 PRK09687 putative lyase; Provi 99.5 6.1E-12 1.3E-16 131.6 22.0 255 191-643 23-277 (280)
15 PF04826 Arm_2: Armadillo-like 99.4 1.7E-11 3.6E-16 126.1 21.6 188 153-468 16-207 (254)
16 cd00020 ARM Armadillo/beta-cat 99.3 1.2E-11 2.5E-16 111.1 11.1 107 155-261 13-120 (120)
17 KOG4199 Uncharacterized conser 99.3 4.7E-09 1E-13 108.4 30.7 314 148-642 109-441 (461)
18 PF10508 Proteasom_PSMB: Prote 99.3 2.3E-09 5E-14 121.3 31.6 317 154-602 82-422 (503)
19 PRK13800 putative oxidoreducta 99.3 5.4E-10 1.2E-14 134.7 25.6 273 151-596 623-895 (897)
20 PF04826 Arm_2: Armadillo-like 99.3 3.3E-10 7.2E-15 116.5 19.5 200 187-521 8-209 (254)
21 PF10508 Proteasom_PSMB: Prote 99.2 5.1E-09 1.1E-13 118.5 29.8 306 154-599 43-365 (503)
22 cd00020 ARM Armadillo/beta-cat 99.2 1E-10 2.2E-15 104.9 12.9 102 186-287 2-104 (120)
23 KOG4500 Rho/Rac GTPase guanine 99.2 1.3E-09 2.7E-14 115.6 22.0 336 159-616 52-406 (604)
24 KOG4500 Rho/Rac GTPase guanine 99.2 4.5E-09 9.8E-14 111.4 24.3 355 155-599 93-518 (604)
25 KOG4199 Uncharacterized conser 99.1 2.8E-08 6.1E-13 102.8 26.7 274 155-555 151-445 (461)
26 PRK13800 putative oxidoreducta 99.0 1.6E-08 3.6E-13 122.0 22.1 246 190-598 620-865 (897)
27 KOG2122 Beta-catenin-binding p 99.0 7.7E-08 1.7E-12 113.6 23.9 333 163-618 208-578 (2195)
28 KOG2122 Beta-catenin-binding p 98.9 3.9E-08 8.5E-13 115.9 20.1 314 155-602 241-603 (2195)
29 KOG0168 Putative ubiquitin fus 98.8 1.8E-06 3.8E-11 98.4 25.4 131 152-285 170-305 (1051)
30 KOG2171 Karyopherin (importin) 98.7 1.4E-05 3E-10 94.4 28.7 369 151-602 120-506 (1075)
31 KOG1222 Kinesin associated pro 98.6 9.6E-06 2.1E-10 87.6 23.1 133 151-287 306-438 (791)
32 PF01602 Adaptin_N: Adaptin N 98.6 1.4E-05 3.1E-10 90.7 25.5 329 148-605 78-411 (526)
33 PF01602 Adaptin_N: Adaptin N 98.6 5.7E-06 1.2E-10 93.9 21.8 283 154-599 9-295 (526)
34 KOG3678 SARM protein (with ste 98.5 3.6E-06 7.8E-11 90.4 18.2 276 183-603 172-455 (832)
35 KOG4646 Uncharacterized conser 98.5 3.4E-07 7.5E-12 83.6 8.8 125 148-273 15-140 (173)
36 KOG2160 Armadillo/beta-catenin 98.5 6.7E-06 1.5E-10 86.8 19.6 128 159-287 93-222 (342)
37 PF00514 Arm: Armadillo/beta-c 98.5 1.7E-07 3.6E-12 68.9 4.5 41 180-220 1-41 (41)
38 cd00256 VATPase_H VATPase_H, r 98.4 3.2E-05 6.9E-10 85.1 22.4 131 155-286 107-240 (429)
39 PTZ00429 beta-adaptin; Provisi 98.4 0.00066 1.4E-08 80.0 32.9 304 148-552 104-431 (746)
40 PF00514 Arm: Armadillo/beta-c 98.3 1.2E-06 2.7E-11 64.3 5.3 41 426-466 1-41 (41)
41 KOG1293 Proteins containing ar 98.3 0.00024 5.3E-09 79.8 25.5 129 155-284 15-150 (678)
42 KOG2160 Armadillo/beta-catenin 98.3 5.8E-06 1.3E-10 87.3 12.1 140 135-287 123-266 (342)
43 cd00256 VATPase_H VATPase_H, r 98.2 0.00044 9.4E-09 76.3 25.7 134 151-285 55-196 (429)
44 TIGR02270 conserved hypothetic 98.2 0.00027 5.9E-09 77.9 23.9 133 411-599 163-295 (410)
45 KOG2171 Karyopherin (importin) 98.2 0.0029 6.3E-08 75.4 31.8 369 151-604 161-553 (1075)
46 PF03224 V-ATPase_H_N: V-ATPas 98.1 3.8E-05 8.3E-10 81.9 13.2 129 155-285 111-250 (312)
47 COG1413 FOG: HEAT repeat [Ener 98.1 0.00031 6.8E-09 75.3 20.1 222 154-551 48-270 (335)
48 KOG1222 Kinesin associated pro 98.1 0.0023 5E-08 69.7 26.0 119 167-287 281-399 (791)
49 TIGR02270 conserved hypothetic 98.0 0.00072 1.6E-08 74.6 20.8 108 402-554 189-296 (410)
50 KOG2023 Nuclear transport rece 98.0 0.00058 1.3E-08 76.7 19.7 138 144-286 169-307 (885)
51 PTZ00429 beta-adaptin; Provisi 98.0 0.0042 9.1E-08 73.4 28.1 292 154-603 37-329 (746)
52 KOG1241 Karyopherin (importin) 98.0 0.0042 9.1E-08 71.1 26.6 119 143-262 357-478 (859)
53 PF13646 HEAT_2: HEAT repeats; 97.9 3.9E-05 8.5E-10 65.3 8.3 86 439-550 1-88 (88)
54 smart00185 ARM Armadillo/beta- 97.8 4.1E-05 8.8E-10 55.5 5.3 40 181-220 2-41 (41)
55 KOG0946 ER-Golgi vesicle-tethe 97.8 0.0073 1.6E-07 69.4 25.4 132 150-285 23-177 (970)
56 PF03224 V-ATPase_H_N: V-ATPas 97.8 6.8E-05 1.5E-09 80.0 9.1 129 156-286 157-294 (312)
57 KOG0168 Putative ubiquitin fus 97.7 0.0024 5.2E-08 73.6 19.7 254 193-617 169-431 (1051)
58 PF13646 HEAT_2: HEAT repeats; 97.7 0.00014 2.9E-09 61.9 7.4 85 490-595 1-87 (88)
59 KOG1062 Vesicle coat complex A 97.6 0.018 3.8E-07 66.6 25.2 300 148-598 106-412 (866)
60 smart00185 ARM Armadillo/beta- 97.6 9.8E-05 2.1E-09 53.4 4.9 40 222-261 2-41 (41)
61 KOG0946 ER-Golgi vesicle-tethe 97.6 0.007 1.5E-07 69.5 21.2 139 135-286 60-220 (970)
62 KOG1062 Vesicle coat complex A 97.6 0.034 7.5E-07 64.3 26.0 310 114-553 100-450 (866)
63 COG1413 FOG: HEAT repeat [Ener 97.5 0.0066 1.4E-07 65.1 19.7 187 191-553 43-241 (335)
64 KOG2759 Vacuolar H+-ATPase V1 97.5 0.01 2.2E-07 64.2 20.4 131 155-287 120-254 (442)
65 KOG3678 SARM protein (with ste 97.4 0.0026 5.6E-08 69.0 14.5 127 161-288 234-365 (832)
66 PF13513 HEAT_EZ: HEAT-like re 97.3 0.00029 6.4E-09 54.8 4.6 55 205-259 1-55 (55)
67 PF13513 HEAT_EZ: HEAT-like re 97.3 0.00048 1E-08 53.6 5.1 53 411-464 3-55 (55)
68 KOG1293 Proteins containing ar 97.3 0.0017 3.6E-08 73.3 10.9 118 155-272 425-544 (678)
69 KOG2759 Vacuolar H+-ATPase V1 97.1 0.019 4.2E-07 62.0 16.3 258 152-464 159-436 (442)
70 PF05536 Neurochondrin: Neuroc 97.0 0.0064 1.4E-07 69.7 12.3 133 154-287 10-153 (543)
71 KOG2973 Uncharacterized conser 96.8 0.063 1.4E-06 56.1 16.7 113 152-269 6-119 (353)
72 KOG4646 Uncharacterized conser 96.7 0.0027 5.9E-08 58.6 5.5 96 191-287 16-112 (173)
73 KOG1059 Vesicle coat complex A 96.7 1.8 3.9E-05 50.1 28.6 137 135-286 130-268 (877)
74 KOG1517 Guanine nucleotide bin 96.7 0.053 1.2E-06 64.3 16.6 135 411-555 573-733 (1387)
75 PF09759 Atx10homo_assoc: Spin 96.7 0.0071 1.5E-07 53.6 7.5 65 208-272 3-70 (102)
76 KOG1060 Vesicle coat complex A 96.6 0.74 1.6E-05 53.6 24.8 329 152-581 111-476 (968)
77 PF09759 Atx10homo_assoc: Spin 96.6 0.0075 1.6E-07 53.4 7.3 68 165-232 2-72 (102)
78 COG5096 Vesicle coat complex, 96.6 0.028 6E-07 65.8 13.9 153 416-598 41-193 (757)
79 KOG2023 Nuclear transport rece 96.6 0.24 5.2E-06 56.6 20.5 100 155-261 399-505 (885)
80 KOG4535 HEAT and armadillo rep 96.6 0.012 2.5E-07 64.4 9.8 200 411-619 407-624 (728)
81 KOG1061 Vesicle coat complex A 96.5 0.095 2.1E-06 60.6 17.5 103 153-264 90-192 (734)
82 KOG1789 Endocytosis protein RM 96.4 0.73 1.6E-05 55.1 23.6 104 156-261 1778-1883(2235)
83 KOG1789 Endocytosis protein RM 96.3 0.88 1.9E-05 54.4 23.1 119 167-287 1743-1866(2235)
84 KOG0567 HEAT repeat-containing 96.3 0.59 1.3E-05 48.1 19.4 102 414-552 175-278 (289)
85 KOG1242 Protein containing ada 96.0 1 2.2E-05 51.3 21.5 312 192-552 97-442 (569)
86 KOG2259 Uncharacterized conser 95.9 0.11 2.4E-06 59.0 13.3 113 146-265 194-314 (823)
87 KOG1241 Karyopherin (importin) 95.8 5.7 0.00012 46.5 28.2 221 410-644 232-476 (859)
88 KOG1059 Vesicle coat complex A 95.8 0.51 1.1E-05 54.4 17.9 223 194-568 147-373 (877)
89 KOG0213 Splicing factor 3b, su 95.6 0.9 2E-05 52.6 19.0 181 437-645 883-1065(1172)
90 COG5215 KAP95 Karyopherin (imp 95.5 1.5 3.2E-05 49.6 19.8 119 144-265 360-483 (858)
91 PF12348 CLASP_N: CLASP N term 95.4 0.29 6.2E-06 49.4 13.6 183 411-606 23-212 (228)
92 COG5240 SEC21 Vesicle coat com 95.2 0.97 2.1E-05 51.0 17.4 285 193-598 266-553 (898)
93 PF12348 CLASP_N: CLASP N term 95.1 0.42 9.1E-06 48.1 13.5 105 159-263 17-125 (228)
94 PF12755 Vac14_Fab1_bd: Vacuol 94.9 0.13 2.8E-06 45.3 8.0 67 191-260 27-95 (97)
95 KOG1242 Protein containing ada 94.8 2 4.4E-05 48.9 18.9 124 155-287 222-346 (569)
96 KOG2259 Uncharacterized conser 94.8 0.77 1.7E-05 52.6 15.4 70 497-567 382-451 (823)
97 KOG1824 TATA-binding protein-i 94.8 1.3 2.8E-05 52.6 17.5 67 489-555 818-887 (1233)
98 PF05536 Neurochondrin: Neuroc 94.7 0.12 2.7E-06 59.3 9.2 95 163-261 71-168 (543)
99 KOG0567 HEAT repeat-containing 94.6 1.5 3.2E-05 45.3 15.7 55 526-595 219-275 (289)
100 KOG1517 Guanine nucleotide bin 94.4 0.72 1.6E-05 55.2 14.5 131 155-286 518-654 (1387)
101 COG5181 HSH155 U2 snRNP splice 94.4 1.2 2.6E-05 50.7 15.5 114 148-265 603-721 (975)
102 KOG4413 26S proteasome regulat 94.3 8.7 0.00019 40.9 20.7 132 154-285 87-224 (524)
103 KOG1077 Vesicle coat complex A 93.9 16 0.00034 42.7 23.3 120 149-283 111-233 (938)
104 KOG0213 Splicing factor 3b, su 93.9 17 0.00037 42.7 26.9 148 442-605 804-959 (1172)
105 KOG1061 Vesicle coat complex A 93.7 0.44 9.5E-06 55.4 10.9 162 412-603 31-192 (734)
106 PF14668 RICTOR_V: Rapamycin-i 93.6 0.31 6.6E-06 40.6 7.1 66 208-274 4-70 (73)
107 PF14664 RICTOR_N: Rapamycin-i 93.5 10 0.00022 41.6 20.8 129 410-551 123-266 (371)
108 PF02985 HEAT: HEAT repeat; I 93.2 0.13 2.8E-06 35.2 3.6 28 234-261 2-29 (31)
109 PF02985 HEAT: HEAT repeat; I 93.0 0.12 2.5E-06 35.4 3.1 28 526-553 1-28 (31)
110 COG5181 HSH155 U2 snRNP splice 92.9 1.4 3E-05 50.2 12.7 139 437-599 688-828 (975)
111 COG5369 Uncharacterized conser 92.4 0.19 4.2E-06 56.0 5.4 118 155-272 437-559 (743)
112 PF08045 CDC14: Cell division 92.3 1.2 2.5E-05 46.2 10.7 85 207-291 107-193 (257)
113 PF10165 Ric8: Guanine nucleot 92.3 0.61 1.3E-05 52.4 9.4 114 170-284 2-132 (446)
114 PF11698 V-ATPase_H_C: V-ATPas 92.3 0.24 5.2E-06 45.2 5.0 70 150-219 44-114 (119)
115 PF06025 DUF913: Domain of Unk 92.1 21 0.00046 39.3 20.9 112 161-272 121-243 (379)
116 PF12717 Cnd1: non-SMC mitotic 91.8 0.55 1.2E-05 45.8 7.4 91 502-601 2-93 (178)
117 PF12755 Vac14_Fab1_bd: Vacuol 91.6 0.92 2E-05 39.9 7.9 59 487-545 26-88 (97)
118 KOG1824 TATA-binding protein-i 91.4 5.6 0.00012 47.6 15.9 103 437-552 174-284 (1233)
119 PF14664 RICTOR_N: Rapamycin-i 91.3 1.8 4E-05 47.4 11.5 127 157-288 33-161 (371)
120 KOG1060 Vesicle coat complex A 91.1 27 0.0006 41.3 20.7 161 410-601 158-351 (968)
121 PF11698 V-ATPase_H_C: V-ATPas 91.1 0.45 9.8E-06 43.4 5.5 70 192-261 44-115 (119)
122 PF12717 Cnd1: non-SMC mitotic 91.1 1.4 3.1E-05 42.9 9.6 92 162-262 1-93 (178)
123 PF06025 DUF913: Domain of Unk 91.0 28 0.00061 38.3 20.7 59 226-284 99-161 (379)
124 COG5369 Uncharacterized conser 90.6 0.6 1.3E-05 52.3 6.8 118 170-287 410-529 (743)
125 PF10165 Ric8: Guanine nucleot 90.1 2.4 5.1E-05 47.7 11.4 126 158-284 41-190 (446)
126 PF04063 DUF383: Domain of unk 89.9 3.6 7.8E-05 40.8 11.1 120 164-285 10-158 (192)
127 PF06371 Drf_GBD: Diaphanous G 89.8 2.4 5.3E-05 41.1 10.0 104 155-260 72-186 (187)
128 PF05004 IFRD: Interferon-rela 89.7 23 0.0005 37.8 18.0 109 151-261 45-160 (309)
129 COG5096 Vesicle coat complex, 89.5 2.5 5.5E-05 49.9 11.2 106 147-261 90-195 (757)
130 PF11841 DUF3361: Domain of un 89.3 4.1 9E-05 39.1 10.6 104 184-287 4-115 (160)
131 PF11701 UNC45-central: Myosin 89.3 2.5 5.4E-05 40.5 9.3 131 448-597 16-156 (157)
132 PF12460 MMS19_C: RNAPII trans 88.7 3.6 7.9E-05 45.7 11.4 111 152-265 274-398 (415)
133 PF08045 CDC14: Cell division 87.8 4.2 9.1E-05 42.2 10.3 93 165-257 107-203 (257)
134 KOG1240 Protein kinase contain 87.7 23 0.00049 43.8 17.4 103 489-599 579-684 (1431)
135 COG5116 RPN2 26S proteasome re 87.6 1.2 2.7E-05 50.1 6.6 130 441-601 520-651 (926)
136 KOG0212 Uncharacterized conser 86.9 64 0.0014 37.0 19.8 200 67-286 132-348 (675)
137 KOG2611 Neurochondrin/leucine- 86.3 8.4 0.00018 43.0 11.9 128 155-285 17-163 (698)
138 COG5240 SEC21 Vesicle coat com 84.6 46 0.001 38.2 16.7 140 411-553 280-441 (898)
139 PF05918 API5: Apoptosis inhib 84.6 4.9 0.00011 46.1 9.7 77 500-585 34-110 (556)
140 PF05659 RPW8: Arabidopsis bro 84.5 5.3 0.00011 38.0 8.4 74 17-91 17-90 (147)
141 KOG2973 Uncharacterized conser 84.4 2.7 5.8E-05 44.4 6.8 89 194-286 6-94 (353)
142 PF12719 Cnd3: Nuclear condens 84.1 7.8 0.00017 41.0 10.5 101 156-261 34-143 (298)
143 KOG2734 Uncharacterized conser 83.9 9.8 0.00021 42.1 11.0 118 168-286 103-236 (536)
144 KOG4413 26S proteasome regulat 83.6 68 0.0015 34.5 24.3 102 167-272 61-167 (524)
145 COG5231 VMA13 Vacuolar H+-ATPa 81.4 68 0.0015 34.4 15.6 129 157-286 157-291 (432)
146 PF05004 IFRD: Interferon-rela 81.4 29 0.00064 37.0 13.6 131 413-552 104-255 (309)
147 KOG2062 26S proteasome regulat 81.3 5.1 0.00011 46.8 8.0 128 442-600 524-653 (929)
148 KOG2032 Uncharacterized conser 80.6 11 0.00025 42.1 10.2 139 403-553 268-414 (533)
149 KOG4151 Myosin assembly protei 80.6 36 0.00077 40.3 14.6 202 181-516 494-698 (748)
150 PF14668 RICTOR_V: Rapamycin-i 80.6 6.3 0.00014 32.8 6.4 66 166-232 4-70 (73)
151 KOG1240 Protein kinase contain 79.5 93 0.002 38.9 17.8 97 162-261 436-537 (1431)
152 PF05918 API5: Apoptosis inhib 79.3 7.7 0.00017 44.6 8.8 87 449-549 34-120 (556)
153 KOG1078 Vesicle coat complex C 77.9 1.5E+02 0.0033 35.4 18.4 72 190-265 240-315 (865)
154 KOG2999 Regulator of Rac1, req 77.6 16 0.00035 41.5 10.2 137 150-287 84-226 (713)
155 KOG3036 Protein involved in ce 77.6 33 0.00072 35.4 11.6 111 161-272 137-257 (293)
156 COG5215 KAP95 Karyopherin (imp 77.5 1.5E+02 0.0031 34.4 26.0 110 165-286 344-459 (858)
157 KOG3665 ZYG-1-like serine/thre 75.2 31 0.00067 41.1 12.6 150 418-581 494-677 (699)
158 PF04063 DUF383: Domain of unk 72.7 12 0.00025 37.2 7.1 65 166-231 75-143 (192)
159 PF12719 Cnd3: Nuclear condens 72.0 21 0.00046 37.7 9.4 115 488-602 26-145 (298)
160 KOG4151 Myosin assembly protei 72.0 29 0.00064 41.0 11.0 123 165-287 558-683 (748)
161 KOG4535 HEAT and armadillo rep 71.9 8.5 0.00018 43.0 6.2 143 411-558 449-607 (728)
162 KOG0212 Uncharacterized conser 71.7 31 0.00068 39.4 10.6 85 192-283 337-421 (675)
163 KOG1058 Vesicle coat complex C 70.4 2.4E+02 0.0052 33.7 17.7 103 436-553 242-345 (948)
164 PF04078 Rcd1: Cell differenti 69.8 39 0.00083 35.2 10.2 126 162-287 8-152 (262)
165 KOG1058 Vesicle coat complex C 69.3 24 0.00051 41.6 9.3 118 438-555 135-273 (948)
166 PF11701 UNC45-central: Myosin 69.3 7.9 0.00017 37.0 4.9 99 158-257 52-155 (157)
167 PF12460 MMS19_C: RNAPII trans 68.9 96 0.0021 34.4 14.1 114 482-602 265-396 (415)
168 COG5116 RPN2 26S proteasome re 67.8 19 0.00041 41.1 7.9 98 492-605 520-620 (926)
169 PF11841 DUF3361: Domain of un 67.7 36 0.00078 32.8 8.9 106 155-261 17-131 (160)
170 KOG0414 Chromosome condensatio 67.1 38 0.00082 41.9 10.8 113 449-585 935-1049(1251)
171 PF11791 Aconitase_B_N: Aconit 66.1 8.2 0.00018 36.6 4.1 29 233-261 95-123 (154)
172 KOG0211 Protein phosphatase 2A 65.9 3E+02 0.0066 33.2 19.1 77 432-520 591-667 (759)
173 PF03130 HEAT_PBS: PBS lyase H 65.8 4.7 0.0001 26.6 1.8 26 504-535 1-26 (27)
174 KOG1943 Beta-tubulin folding c 65.7 3.4E+02 0.0075 33.7 24.3 142 411-553 444-610 (1133)
175 KOG2062 26S proteasome regulat 64.7 20 0.00044 42.0 7.6 88 158-260 564-652 (929)
176 KOG3036 Protein involved in ce 64.0 63 0.0014 33.4 10.1 98 165-263 95-199 (293)
177 KOG2025 Chromosome condensatio 63.8 32 0.0007 40.3 9.0 123 150-281 86-214 (892)
178 KOG1077 Vesicle coat complex A 63.7 3.1E+02 0.0068 32.6 26.4 118 155-286 80-199 (938)
179 PF01347 Vitellogenin_N: Lipop 63.6 2.8E+02 0.006 32.3 17.3 159 414-595 413-584 (618)
180 PF12031 DUF3518: Domain of un 62.2 21 0.00047 36.6 6.5 133 147-286 71-228 (257)
181 PF08167 RIX1: rRNA processing 61.5 42 0.00092 32.3 8.3 81 147-229 23-110 (165)
182 KOG1991 Nuclear transport rece 61.2 3.9E+02 0.0085 32.9 18.7 72 190-261 409-491 (1010)
183 PF11791 Aconitase_B_N: Aconit 60.5 34 0.00074 32.6 7.1 26 527-552 96-121 (154)
184 KOG2999 Regulator of Rac1, req 60.1 1.3E+02 0.0027 34.7 12.4 53 194-246 86-138 (713)
185 KOG2734 Uncharacterized conser 59.9 2.9E+02 0.0064 31.0 18.0 186 99-285 122-329 (536)
186 COG5098 Chromosome condensatio 58.6 31 0.00068 40.3 7.6 133 402-557 907-1040(1128)
187 PF04078 Rcd1: Cell differenti 56.5 1.5E+02 0.0032 30.9 11.6 95 167-262 68-169 (262)
188 smart00567 EZ_HEAT E-Z type HE 54.5 14 0.0003 24.6 2.6 14 540-553 2-15 (30)
189 PF10363 DUF2435: Protein of u 53.9 96 0.0021 26.9 8.4 80 443-536 9-88 (92)
190 PF10363 DUF2435: Protein of u 52.4 56 0.0012 28.4 6.7 81 196-285 8-88 (92)
191 PF12031 DUF3518: Domain of un 52.3 67 0.0015 33.1 8.1 81 164-245 139-229 (257)
192 COG5218 YCG1 Chromosome conden 50.4 1E+02 0.0022 35.6 9.9 101 150-261 92-196 (885)
193 COG5231 VMA13 Vacuolar H+-ATPa 49.9 15 0.00033 39.1 3.2 70 150-219 357-427 (432)
194 smart00638 LPD_N Lipoprotein N 48.5 2.7E+02 0.0058 32.2 13.7 90 488-595 442-540 (574)
195 PF14726 RTTN_N: Rotatin, an a 47.9 1.1E+02 0.0023 27.1 7.8 68 189-256 28-95 (98)
196 KOG1991 Nuclear transport rece 47.7 3.6E+02 0.0078 33.2 14.2 111 502-618 432-550 (1010)
197 KOG1078 Vesicle coat complex C 47.5 1.5E+02 0.0032 35.4 10.9 138 411-553 261-420 (865)
198 PF06685 DUF1186: Protein of u 46.4 2.6E+02 0.0057 29.0 11.6 92 505-610 59-153 (249)
199 PF08216 CTNNBL: Catenin-beta- 45.9 41 0.0009 30.2 4.9 40 167-207 64-103 (108)
200 KOG0414 Chromosome condensatio 45.1 86 0.0019 39.0 8.8 123 401-546 933-1056(1251)
201 smart00638 LPD_N Lipoprotein N 44.0 3.4E+02 0.0073 31.4 13.6 103 487-604 392-513 (574)
202 KOG2933 Uncharacterized conser 43.5 1.2E+02 0.0025 32.5 8.5 128 487-634 128-260 (334)
203 cd03569 VHS_Hrs_Vps27p VHS dom 42.0 80 0.0017 29.7 6.6 47 572-618 42-90 (142)
204 cd03569 VHS_Hrs_Vps27p VHS dom 41.9 90 0.0019 29.4 6.9 71 150-220 42-114 (142)
205 cd03568 VHS_STAM VHS domain fa 41.8 79 0.0017 29.9 6.5 47 572-618 38-86 (144)
206 PF08324 PUL: PUL domain; Int 41.6 62 0.0014 33.3 6.4 110 160-270 121-240 (268)
207 PF14225 MOR2-PAG1_C: Cell mor 41.2 4.4E+02 0.0095 27.5 14.1 159 414-598 81-252 (262)
208 KOG0211 Protein phosphatase 2A 41.0 7.4E+02 0.016 30.1 25.3 398 145-598 232-662 (759)
209 cd03561 VHS VHS domain family; 40.0 1.2E+02 0.0026 28.0 7.4 70 151-220 39-112 (133)
210 KOG0915 Uncharacterized conser 39.0 1E+03 0.022 31.1 18.3 299 150-568 1040-1358(1702)
211 PF08216 CTNNBL: Catenin-beta- 38.9 31 0.00068 31.0 3.1 40 210-249 65-104 (108)
212 PF07814 WAPL: Wings apart-lik 38.1 1.5E+02 0.0032 32.4 8.9 87 155-242 27-116 (361)
213 smart00288 VHS Domain present 37.6 1.1E+02 0.0025 28.2 6.8 71 150-220 38-111 (133)
214 KOG2025 Chromosome condensatio 36.3 2.2E+02 0.0047 33.9 9.9 105 437-551 85-190 (892)
215 PF07923 N1221: N1221-like pro 35.6 55 0.0012 34.6 4.9 54 149-202 60-127 (293)
216 PF13251 DUF4042: Domain of un 35.2 2.2E+02 0.0049 28.0 8.7 111 445-555 48-175 (182)
217 COG5098 Chromosome condensatio 34.2 1.8E+02 0.004 34.4 8.8 105 486-599 931-1036(1128)
218 PF06685 DUF1186: Protein of u 33.9 1.8E+02 0.0039 30.2 8.1 75 190-272 72-153 (249)
219 PF11865 DUF3385: Domain of un 33.8 2E+02 0.0044 27.5 8.1 68 192-259 87-155 (160)
220 cd03561 VHS VHS domain family; 33.6 1.5E+02 0.0032 27.3 6.9 70 192-261 38-112 (133)
221 PF01347 Vitellogenin_N: Lipop 32.8 72 0.0016 37.2 5.8 123 146-286 428-570 (618)
222 PF07814 WAPL: Wings apart-lik 32.8 2E+02 0.0043 31.4 8.8 91 194-284 24-116 (361)
223 cd03568 VHS_STAM VHS domain fa 32.7 1.2E+02 0.0027 28.5 6.3 70 192-261 38-110 (144)
224 PF08569 Mo25: Mo25-like; Int 32.4 1.6E+02 0.0035 31.9 7.9 112 150-261 165-283 (335)
225 KOG2032 Uncharacterized conser 32.1 1.9E+02 0.0041 32.8 8.3 134 150-287 259-400 (533)
226 smart00288 VHS Domain present 32.1 1.4E+02 0.003 27.6 6.4 45 574-618 40-86 (133)
227 PF07923 N1221: N1221-like pro 30.9 72 0.0016 33.7 4.9 54 190-243 59-127 (293)
228 cd03567 VHS_GGA VHS domain fam 30.4 1.5E+02 0.0032 27.8 6.4 70 192-261 39-116 (139)
229 KOG1832 HIV-1 Vpr-binding prot 29.1 1.1E+02 0.0024 37.0 6.2 70 162-231 675-784 (1516)
230 PF08167 RIX1: rRNA processing 29.0 3.1E+02 0.0067 26.3 8.5 73 440-517 70-143 (165)
231 KOG1943 Beta-tubulin folding c 28.7 1.3E+03 0.027 29.1 19.3 111 147-262 339-458 (1133)
232 COG5209 RCD1 Uncharacterized p 28.5 1.4E+02 0.003 30.6 6.0 97 166-263 117-220 (315)
233 COG5218 YCG1 Chromosome conden 28.2 2.9E+02 0.0064 32.2 9.0 104 437-550 91-195 (885)
234 KOG2933 Uncharacterized conser 27.0 3.8E+02 0.0082 28.8 9.1 110 487-604 87-203 (334)
235 PF08324 PUL: PUL domain; Int 26.7 1.5E+02 0.0032 30.5 6.3 99 411-517 126-231 (268)
236 KOG1820 Microtubule-associated 26.7 8.6E+02 0.019 29.8 13.2 126 410-552 310-441 (815)
237 PF06371 Drf_GBD: Diaphanous G 26.5 1.4E+02 0.003 28.7 5.7 58 161-219 128-186 (187)
238 PF07539 DRIM: Down-regulated 26.1 3.1E+02 0.0066 25.8 7.6 26 192-217 18-43 (141)
239 PF13764 E3_UbLigase_R4: E3 ub 25.4 1.3E+02 0.0029 36.4 6.3 57 227-284 112-173 (802)
240 PF06012 DUF908: Domain of Unk 25.1 3.1E+02 0.0068 29.4 8.6 65 207-271 238-307 (329)
241 PF06012 DUF908: Domain of Unk 25.0 2.5E+02 0.0055 30.2 7.8 57 165-222 238-299 (329)
242 COG5209 RCD1 Uncharacterized p 24.5 4.2E+02 0.009 27.3 8.4 107 163-270 160-276 (315)
243 KOG1087 Cytosolic sorting prot 24.2 1.6E+02 0.0035 33.4 6.2 97 533-647 13-111 (470)
244 PF08569 Mo25: Mo25-like; Int 24.2 9.3E+02 0.02 26.1 14.3 168 430-608 69-291 (335)
245 KOG2137 Protein kinase [Signal 24.2 3.6E+02 0.0078 32.0 9.1 133 155-294 395-530 (700)
246 cd03567 VHS_GGA VHS domain fam 23.7 2.2E+02 0.0048 26.7 6.2 68 152-219 41-115 (139)
247 KOG3665 ZYG-1-like serine/thre 23.4 2.4E+02 0.0051 33.9 7.8 93 172-264 494-590 (699)
248 PF00790 VHS: VHS domain; Int 23.0 1.7E+02 0.0037 27.1 5.4 70 150-219 43-117 (140)
249 cd00197 VHS_ENTH_ANTH VHS, ENT 22.9 2.6E+02 0.0057 24.7 6.4 73 573-646 39-113 (115)
250 PF13764 E3_UbLigase_R4: E3 ub 22.7 1.5E+03 0.032 27.8 24.9 57 186-242 112-173 (802)
251 TIGR00117 acnB aconitate hydra 22.7 3.9E+02 0.0084 32.6 9.2 26 527-552 99-124 (844)
252 KOG1248 Uncharacterized conser 22.1 3E+02 0.0064 34.5 8.2 129 150-286 739-881 (1176)
253 KOG1243 Protein kinase [Genera 21.8 8.7E+02 0.019 28.9 11.5 102 438-552 409-513 (690)
254 KOG4653 Uncharacterized conser 20.8 1.6E+03 0.035 27.6 16.8 167 410-603 742-920 (982)
255 PF08713 DNA_alkylation: DNA a 20.4 2.3E+02 0.0051 27.7 6.1 77 191-273 120-196 (213)
256 PF12830 Nipped-B_C: Sister ch 20.4 3E+02 0.0064 26.9 6.7 67 487-553 7-73 (187)
No 1
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=5.6e-50 Score=405.46 Aligned_cols=402 Identities=19% Similarity=0.235 Sum_probs=323.0
Q ss_pred cccccCCCHHHHHHHHHHHHHh-ccCCchhHHHHHhcCCHHHHHHhhcc-CCHHHHHHHHHHHHHhcCCc-chHHHHHHc
Q 006250 155 IAILHTGSMEEKCDAAASLVSL-ARDNDRYGKLIIEEGGVPPLLKLAYE-GELEGQENAARAIGLLGRDA-ESVEQIVNA 231 (654)
Q Consensus 155 V~lL~s~~~~~k~~Aa~aL~~L-a~~~~~~~~~I~e~G~Ip~LV~LL~s-~~~~~q~~Aa~AL~nLa~~~-e~~~~iv~~ 231 (654)
.+-|.+.+.+.+.+|....+.+ +++.....+.++++|++|.+|+++++ .....|++|+|||.|++++. .+++.++++
T Consensus 77 t~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~ 156 (526)
T COG5064 77 TQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDA 156 (526)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeC
Confidence 7788899999999999999986 56656679999999999999999954 45778999999999999985 667788999
Q ss_pred CchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHHHHh
Q 006250 232 GVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVA 311 (654)
Q Consensus 232 GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~~~ 311 (654)
|+||.|+++|.++..+|++++.|||+|+|++++.+|+.+.+.|++.||+.+|.+.. .|-+ +... .++.+.++|++
T Consensus 157 ~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~--~~is--mlRn-~TWtLSNlcRG 231 (526)
T COG5064 157 GAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSA--IHIS--MLRN-ATWTLSNLCRG 231 (526)
T ss_pred CchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhcc--chHH--HHHH-hHHHHHHhhCC
Confidence 99999999999999999999999999999999999999999999999999997552 1211 1111 11455556666
Q ss_pred hcCCCCC-CCCCCCCC--CCC---CCCc-----ccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCC
Q 006250 312 SNSQNPK-DHRTAPPQ--QQG---NGNI-----SKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQP 380 (654)
Q Consensus 312 ~~~~~~~-~~~~~~~~--~~~---~~~~-----~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~ 380 (654)
.++.... ..+.++|. .+. |.+. |++|| ++||+++.++.|++++...++
T Consensus 232 knP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSY-lsDg~~E~i~avld~g~~~RL-------------------- 290 (526)
T COG5064 232 KNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISY-LSDGPNEKIQAVLDVGIPGRL-------------------- 290 (526)
T ss_pred CCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH-hccCcHHHHHHHHhcCCcHHH--------------------
Confidence 5442110 00111111 111 3222 79998 589999999999998765553
Q ss_pred CCCCccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHH
Q 006250 381 NHHNQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMA 460 (654)
Q Consensus 381 ~~~~~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~A 460 (654)
+++++. ++ .+++++|.|++||+.+|++.+++.|++.|+|+.|..||.++++.+|+++||+
T Consensus 291 ------vElLs~----------~s----a~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWT 350 (526)
T COG5064 291 ------VELLSH----------ES----AKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWT 350 (526)
T ss_pred ------HHHhcC----------cc----ccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhhee
Confidence 333332 33 3578999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhhhhccHHHHHHHhccCCHH
Q 006250 461 LMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRATETRIIGPLVNLLDEREPE 540 (654)
Q Consensus 461 L~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~e~~~I~pLV~lL~~~~~~ 540 (654)
|+||++|.. +|+..+++ .+.|||||++|+..+..
T Consensus 351 iSNITAGnt---------------------eqiqavid-------------------------~nliPpLi~lls~ae~k 384 (526)
T COG5064 351 ISNITAGNT---------------------EQIQAVID-------------------------ANLIPPLIHLLSSAEYK 384 (526)
T ss_pred ecccccCCH---------------------HHHHHHHh-------------------------cccchHHHHHHHHHHHH
Confidence 999998765 33333443 47999999999999999
Q ss_pred HHHHHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhccCCcchHHHHHHHHHHHHhCCCchHHHHhhhhh---HHH
Q 006250 541 VIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIAIKQPESKTLAQEEVL---IVL 617 (654)
Q Consensus 541 v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~ia~~~~~~~~l~~~~~l---~~l 617 (654)
+++|||||++|..++++. .++..+++++.|.|+|||.||...+.++-..++.++.|+ +++|+..+...-.-+ .+.
T Consensus 385 ~kKEACWAisNatsgg~~-~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eni-Lk~Ge~d~~~~~~nin~ya~~ 462 (526)
T COG5064 385 IKKEACWAISNATSGGLN-RPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENI-LKVGEQDRLRYGKNINIYAVY 462 (526)
T ss_pred HHHHHHHHHHhhhccccC-CchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHH-HhhhhHHHHhccCCccHHHHH
Confidence 999999999999988864 689999999999999999999998886544489999999 889887665432222 222
Q ss_pred Hh---hhhhhhhhcCccHHhHHHHHHHHHHhhhcCC
Q 006250 618 EW---SFKQAHLVAEPSIEALLPEAKSTLATYQSRD 650 (654)
Q Consensus 618 ~~---~~~~~~~~q~~~~~~l~~~a~~~l~~y~~~~ 650 (654)
.+ |.+.++.+|+..+.++|.||++|+|.||...
T Consensus 463 vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fFgee 498 (526)
T COG5064 463 VEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFGEE 498 (526)
T ss_pred HHhcccHHHHHHhhhccccHHHHHHHHHHHHHcccc
Confidence 22 7788899999999999999999999999654
No 2
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-47 Score=416.90 Aligned_cols=396 Identities=21% Similarity=0.275 Sum_probs=316.3
Q ss_pred cccccCCCHHHHHHHHHHHHHhc-cCCchhHHHHHhcCCHHHHHHhhccCC-HHHHHHHHHHHHHhcCC-cchHHHHHHc
Q 006250 155 IAILHTGSMEEKCDAAASLVSLA-RDNDRYGKLIIEEGGVPPLLKLAYEGE-LEGQENAARAIGLLGRD-AESVEQIVNA 231 (654)
Q Consensus 155 V~lL~s~~~~~k~~Aa~aL~~La-~~~~~~~~~I~e~G~Ip~LV~LL~s~~-~~~q~~Aa~AL~nLa~~-~e~~~~iv~~ 231 (654)
+..+.+++...+..|...++.+. .+.......++..|.||.||.+|+.++ +.+|++|||||.||+++ .++++.++++
T Consensus 72 ~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~a 151 (514)
T KOG0166|consen 72 LAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDA 151 (514)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccC
Confidence 78888999999999999999884 443355777778899999999998654 99999999999999987 5889999999
Q ss_pred CchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCc---hhhhhHHHHHhhccchhhhHH
Q 006250 232 GVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFET---VQEHSKYAIASKQNISSLHSA 308 (654)
Q Consensus 232 GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~---~~~~~~~al~~~~~~~~i~~l 308 (654)
|++|.|++||.+++..++++|+|||+|++++++.+|+.+++.|++++|+.++.... +..+..| .+..+
T Consensus 152 gavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW---------~LsNl 222 (514)
T KOG0166|consen 152 GAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATW---------TLSNL 222 (514)
T ss_pred CchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHH---------HHHHH
Confidence 99999999999999999999999999999999999999999999999999998664 1122223 33334
Q ss_pred HHhhcCCCC-CCCCCCCCC--CCC--CCC------cccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccc
Q 006250 309 LVASNSQNP-KDHRTAPPQ--QQG--NGN------ISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYA 377 (654)
Q Consensus 309 ~~~~~~~~~-~~~~~~~~~--~~~--~~~------~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~ 377 (654)
|+..+++.. .....+.|. .+. .|+ -|+++| ++|+++++||.|+++++..+
T Consensus 223 crgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsy-Lsdg~ne~iq~vi~~gvv~~------------------ 283 (514)
T KOG0166|consen 223 CRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSY-LTDGSNEKIQMVIDAGVVPR------------------ 283 (514)
T ss_pred HcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HhcCChHHHHHHHHccchHH------------------
Confidence 444332110 000000010 011 222 268998 58999999999999876665
Q ss_pred cCCCCCCccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhcc-CChhHHHH
Q 006250 378 MQPNHHNQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEK-GPEDVKHF 456 (654)
Q Consensus 378 ~~~~~~~~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~-~~~~v~~~ 456 (654)
+++++.. .++ .++.+|.||+||+++|++.+++.+.+.|+|++|..||.+ ..+.+|++
T Consensus 284 --------LV~lL~~----------~~~----~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkE 341 (514)
T KOG0166|consen 284 --------LVDLLGH----------SSP----KVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKE 341 (514)
T ss_pred --------HHHHHcC----------CCc----ccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHH
Confidence 3443333 222 256899999999999999999999999999999999994 55569999
Q ss_pred HHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhhhhccHHHHHHHhcc
Q 006250 457 SAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRATETRIIGPLVNLLDE 536 (654)
Q Consensus 457 aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~e~~~I~pLV~lL~~ 536 (654)
|||+|+||++|.. +|+..++. ++++|+|+++|++
T Consensus 342 AcW~iSNItAG~~---------------------~qiqaVid-------------------------a~l~p~Li~~l~~ 375 (514)
T KOG0166|consen 342 ACWTISNITAGNQ---------------------EQIQAVID-------------------------ANLIPVLINLLQT 375 (514)
T ss_pred HHHHHHHhhcCCH---------------------HHHHHHHH-------------------------cccHHHHHHHHhc
Confidence 9999999998754 34444543 4799999999999
Q ss_pred CCHHHHHHHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhccCCcchHHHHHHHHHHHHhCCCchHHHHh-hhhhH
Q 006250 537 REPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIAIKQPESKTLAQ-EEVLI 615 (654)
Q Consensus 537 ~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~ia~~~~~~~~l~~-~~~l~ 615 (654)
+++++++||+|||+|++++++ ++|.+++++.|.|+|||.||...|..+...++.+|.+| +.+++...... +.+-.
T Consensus 376 ~ef~~rKEAawaIsN~ts~g~---~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~ni-l~~~e~~~~~~~n~~~~ 451 (514)
T KOG0166|consen 376 AEFDIRKEAAWAISNLTSSGT---PEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENI-LKVGEAEKNRGTNPLAI 451 (514)
T ss_pred cchHHHHHHHHHHHhhcccCC---HHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHH-HHHHHHhccccccHHHH
Confidence 999999999999999998885 79999999999999999999888887766699999999 66665444322 22223
Q ss_pred HHHh--hhhhhhhhcCccHHhHHHHHHHHHHhhhcCC
Q 006250 616 VLEW--SFKQAHLVAEPSIEALLPEAKSTLATYQSRD 650 (654)
Q Consensus 616 ~l~~--~~~~~~~~q~~~~~~l~~~a~~~l~~y~~~~ 650 (654)
.+|+ |.++++.+|.|++++||.+|..|++.||+..
T Consensus 452 ~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~e 488 (514)
T KOG0166|consen 452 MIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSEE 488 (514)
T ss_pred HHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCCC
Confidence 3344 8888899999999999999999999999975
No 3
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=1.4e-38 Score=387.98 Aligned_cols=518 Identities=17% Similarity=0.150 Sum_probs=341.0
Q ss_pred HHHHHHHHHHHHHhhCCcccchhcccCcccHHHHHHhhhcChhhHH-----HHHHhcCCCCCcc--ccccCCCCccccch
Q 006250 74 QVLDKAMQLVVKCRANGILKRVFTIIPAAAFRKTLMQLENSLGDVS-----WLIRVSASSEEND--DEYLGLPPIAANEP 146 (654)
Q Consensus 74 ~~l~~a~~l~~~C~~~g~~~r~~~i~~~~~l~~l~~lL~~~~~dv~-----~lL~~s~~~~~~~--~~~~~lp~la~~~~ 146 (654)
+..+.+...++.-.+.+...|.+..-..|++|.|+..|.+....++ .+.+++..+..+. ...+++||+
T Consensus 30 ~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~nk~~Iv~~GaIppL----- 104 (2102)
T PLN03200 30 QEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDLRVKVLLGGCIPPL----- 104 (2102)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHH-----
Confidence 3445555666666666655555543358899999999976543332 3444444332221 246788886
Q ss_pred hhhhHHHHcccccCCCHHHHHHHHHHHHHhcc------------------------------------------------
Q 006250 147 ILCLIWEQIAILHTGSMEEKCDAAASLVSLAR------------------------------------------------ 178 (654)
Q Consensus 147 i~~~v~~lV~lL~s~~~~~k~~Aa~aL~~La~------------------------------------------------ 178 (654)
|.+|++|+.+.|+.|+++|++|+.
T Consensus 105 --------V~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~ 176 (2102)
T PLN03200 105 --------LSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCG 176 (2102)
T ss_pred --------HHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhc
Confidence 555555555555555555555543
Q ss_pred CCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCC-cchHHHHHHcCchHHHHHhhcCC-ChhHHHHHHHHH
Q 006250 179 DNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRD-AESVEQIVNAGVCSTFAKNLKDG-HMKVQSVVAWAV 256 (654)
Q Consensus 179 ~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~-~e~~~~iv~~GaIp~Lv~LL~s~-~~~vq~~Aa~aL 256 (654)
+.+..++.+++.|+||+|+.+|+++++..|++|+++|.+++.+ ++.+..+++.|+||.|+++|+++ ++.+|++|+|+|
T Consensus 177 ~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL 256 (2102)
T PLN03200 177 STDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGAL 256 (2102)
T ss_pred CccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHH
Confidence 3332335567899999999999999999999999999999876 67899999999999999999875 468999999999
Q ss_pred HHHhcCChhhHHHHHhCCcHHHHHHhhccCc-----------hhhhhHHHHHhhccc--hhhhHHH--------------
Q 006250 257 SELASNHPKCQDHFAQNNIVRFLVSHLAFET-----------VQEHSKYAIASKQNI--SSLHSAL-------------- 309 (654)
Q Consensus 257 ~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~-----------~~~~~~~al~~~~~~--~~i~~l~-------------- 309 (654)
.||+.+++++|+.+++.|+||+|++++.++. .+++..||+.|...- .-+..+.
T Consensus 257 ~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ad 336 (2102)
T PLN03200 257 EALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIAD 336 (2102)
T ss_pred HHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHH
Confidence 9999999999999999999999999997432 256677777753220 0001110
Q ss_pred ---------HhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhh-HHhh-------------------------
Q 006250 310 ---------VASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISN-VVTN------------------------- 354 (654)
Q Consensus 310 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~-vv~s------------------------- 354 (654)
+.....+...+ ...+..+ .|.++..+...++.-.+. ++.+
T Consensus 337 a~gALayll~l~d~~~~~~~-~i~~~~v----~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~ 411 (2102)
T PLN03200 337 TLGALAYALMVFDSSAESTR-AFDPTVI----EQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVG 411 (2102)
T ss_pred HHhhHHHHHHhcCCchhhhh-hcccccc----HHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhh
Confidence 00000000000 0000000 011111111111111010 0000
Q ss_pred -------------hhhhc-cc-CCCcccccCCcccccccCCCCCCccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHH
Q 006250 355 -------------TIAIK-TR-APTNAQQAQPDSHMYAMQPNHHNQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARAL 419 (654)
Q Consensus 355 -------------~~a~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL 419 (654)
..+.. +. .+......+. ..|++|.++.+|++ .++ .+|..|+++|
T Consensus 412 LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi-------~~ggIp~LV~LL~s----------~s~----~iQ~~A~~~L 470 (2102)
T PLN03200 412 LITMATADVQEELIRALSSLCCGKGGLWEALG-------GREGVQLLISLLGL----------SSE----QQQEYAVALL 470 (2102)
T ss_pred hhccCCHHHHHHHHHHHHHHhCCCHHHHHHHH-------HcCcHHHHHHHHcC----------CCH----HHHHHHHHHH
Confidence 00000 00 0000111111 14677888877665 222 4788999999
Q ss_pred HHhhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhh
Q 006250 420 WKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEK 499 (654)
Q Consensus 420 ~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~ 499 (654)
++|++|+++++..|++.|++|+|+.||++++.++|++|+|||+||+... .+.|+.. ...++++.|++++++
T Consensus 471 ~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~---~qir~iV------~~aGAIppLV~LL~s 541 (2102)
T PLN03200 471 AILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHS---EDIRACV------ESAGAVPALLWLLKN 541 (2102)
T ss_pred HHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCc---HHHHHHH------HHCCCHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999998643 2333311 012355666677766
Q ss_pred cCcchhhHHHHHHHHhhhc----------------------------------chh--------hhhccHHHHHHHhccC
Q 006250 500 ADSDLLIPSIRAIGNLART----------------------------------FRA--------TETRIIGPLVNLLDER 537 (654)
Q Consensus 500 ~~~~l~~~~~~alg~la~~----------------------------------~~~--------~e~~~I~pLV~lL~~~ 537 (654)
++++.+..++++|.+|... -.. ...++|++|++||+++
T Consensus 542 gd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sg 621 (2102)
T PLN03200 542 GGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSS 621 (2102)
T ss_pred CCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCC
Confidence 6666666777776666421 000 1246899999999999
Q ss_pred CHHHHHHHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhccCCcchHHHHHHHHHHHHhCC--CchHHHHhhhhhH
Q 006250 538 EPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIAIKQ--PESKTLAQEEVLI 615 (654)
Q Consensus 538 ~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~ia~~~--~~~~~l~~~~~l~ 615 (654)
+..++++|+|+|.+++++ +.+++..++..|||+||+.||++++..++..|+++|.|++.+. .+...+.++|+++
T Consensus 622 s~~ikk~Aa~iLsnL~a~----~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~ 697 (2102)
T PLN03200 622 KEETQEKAASVLADIFSS----RQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIK 697 (2102)
T ss_pred CHHHHHHHHHHHHHHhcC----ChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHH
Confidence 999999999999999854 3678889999999999999999998889999999999997432 2234678899999
Q ss_pred HHHhhhhhhhhhcCccHHhHHHHHHHHHHhhhcCC
Q 006250 616 VLEWSFKQAHLVAEPSIEALLPEAKSTLATYQSRD 650 (654)
Q Consensus 616 ~l~~~~~~~~~~q~~~~~~l~~~a~~~l~~y~~~~ 650 (654)
.|.. ++.+. ..++...|...|+.....+
T Consensus 698 pL~~------LL~~~-d~~v~e~Al~ALanLl~~~ 725 (2102)
T PLN03200 698 PLIK------LAKSS-SIEVAEQAVCALANLLSDP 725 (2102)
T ss_pred HHHH------HHhCC-ChHHHHHHHHHHHHHHcCc
Confidence 9973 33332 2244455555555444433
No 4
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=1.2e-36 Score=371.14 Aligned_cols=441 Identities=17% Similarity=0.218 Sum_probs=330.5
Q ss_pred HHHHHhhCCcccchhcccCcccHHHHHHhhhcChhh----HHHHH-HhcCCCC-Ccc--ccccCCCCccccchhhhhHHH
Q 006250 82 LVVKCRANGILKRVFTIIPAAAFRKTLMQLENSLGD----VSWLI-RVSASSE-END--DEYLGLPPIAANEPILCLIWE 153 (654)
Q Consensus 82 l~~~C~~~g~~~r~~~i~~~~~l~~l~~lL~~~~~d----v~~lL-~~s~~~~-~~~--~~~~~lp~la~~~~i~~~v~~ 153 (654)
+...|..++...+ .++.+|++|.++.+|.+...+ ..|++ ++..+.. .+. ...|++|++
T Consensus 171 L~nLs~~~en~~~--~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~L------------ 236 (2102)
T PLN03200 171 LRNLCGSTDGFWS--ATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQL------------ 236 (2102)
T ss_pred HHHHhcCccchHH--HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHH------------
Confidence 4455654443322 245789999999999876543 34544 4433322 222 357888888
Q ss_pred HcccccCC-CHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCC---------HHHHHHHHHHHHHhcCCc-
Q 006250 154 QIAILHTG-SMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGE---------LEGQENAARAIGLLGRDA- 222 (654)
Q Consensus 154 lV~lL~s~-~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~---------~~~q~~Aa~AL~nLa~~~- 222 (654)
|++|+++ ++.+|++|+|+|++++.+++++++.|++.||||+|++++.+++ ...|++|+|||.||+++.
T Consensus 237 -V~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~ 315 (2102)
T PLN03200 237 -LKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMS 315 (2102)
T ss_pred -HHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCch
Confidence 9999876 5689999999999999988999999999999999999998654 346999999999998840
Q ss_pred c-----------h-------------------------------------------------------------------
Q 006250 223 E-----------S------------------------------------------------------------------- 224 (654)
Q Consensus 223 e-----------~------------------------------------------------------------------- 224 (654)
. .
T Consensus 316 ~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~ 395 (2102)
T PLN03200 316 ALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAY 395 (2102)
T ss_pred hhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChH
Confidence 0 0
Q ss_pred -HHHHHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccch
Q 006250 225 -VEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNIS 303 (654)
Q Consensus 225 -~~~iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~ 303 (654)
++.+.+.|++++||.||..++.++|++++|+|.+|+.++.+.++.|.+.|++|+|+.+|++++. +..++|+.
T Consensus 396 l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~-~iQ~~A~~------ 468 (2102)
T PLN03200 396 LSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSE-QQQEYAVA------ 468 (2102)
T ss_pred HHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCH-HHHHHHHH------
Confidence 0112345677788888888888999999999999999889999999999999999999998752 12222111
Q ss_pred hhhHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCC
Q 006250 304 SLHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHH 383 (654)
Q Consensus 304 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (654)
.+..+. .+++++.+.+++ .|++
T Consensus 469 ~L~nLa--------------------------------~~ndenr~aIie--------------------------aGaI 490 (2102)
T PLN03200 469 LLAILT--------------------------------DEVDESKWAITA--------------------------AGGI 490 (2102)
T ss_pred HHHHHH--------------------------------cCCHHHHHHHHH--------------------------CCCH
Confidence 111111 112222333333 4678
Q ss_pred CccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHH
Q 006250 384 NQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALME 463 (654)
Q Consensus 384 ~~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~ 463 (654)
|.|+.++++ .+ .++|..|+|||+||+.++.++++.|.+.|++++|+.+|++++.++|++|+|||.+
T Consensus 491 P~LV~LL~s----------~~----~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~n 556 (2102)
T PLN03200 491 PPLVQLLET----------GS----QKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTK 556 (2102)
T ss_pred HHHHHHHcC----------CC----HHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 888887765 22 2578999999999998765555556688999999999999999999999999999
Q ss_pred HHhhcccC-------------hHhhhhcc-------C--------CCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHh
Q 006250 464 ITAVAEKN-------------SDLRRSAF-------K--------PTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNL 515 (654)
Q Consensus 464 Iaa~ae~~-------------~~lrr~a~-------~--------~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~l 515 (654)
++...++. +.....+. . .......++++.|++++++++++.+..++++|+++
T Consensus 557 Li~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL 636 (2102)
T PLN03200 557 LVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADI 636 (2102)
T ss_pred HHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 97544321 00000000 0 00000124788999999999999999999999999
Q ss_pred hhcchh-----hhhccHHHHHHHhccCCHHHHHHHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhccCCcchHHH
Q 006250 516 ARTFRA-----TETRIIGPLVNLLDEREPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIP 590 (654)
Q Consensus 516 a~~~~~-----~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~ 590 (654)
+.+-.. ...++|||||.+|++++++++++|+|||++++.+++ .+|..++++.|+|+||++||.+++..+...
T Consensus 637 ~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~---~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~ 713 (2102)
T PLN03200 637 FSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIK---ENRKVSYAAEDAIKPLIKLAKSSSIEVAEQ 713 (2102)
T ss_pred hcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCC---HHHHHHHHHcCCHHHHHHHHhCCChHHHHH
Confidence 975443 245789999999999999999999999999986543 466778899999999999999988878888
Q ss_pred HHHHHHHHHhCCCchHHHHhhhhhHHHHh
Q 006250 591 ALTLLCYIAIKQPESKTLAQEEVLIVLEW 619 (654)
Q Consensus 591 Al~~L~~ia~~~~~~~~l~~~~~l~~l~~ 619 (654)
|+.+|.+++.+.....++.++++++.|..
T Consensus 714 Al~ALanLl~~~e~~~ei~~~~~I~~Lv~ 742 (2102)
T PLN03200 714 AVCALANLLSDPEVAAEALAEDIILPLTR 742 (2102)
T ss_pred HHHHHHHHHcCchHHHHHHhcCcHHHHHH
Confidence 99999999887777888888999999873
No 5
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.97 E-value=4.4e-30 Score=261.09 Aligned_cols=430 Identities=19% Similarity=0.229 Sum_probs=300.1
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHhHHhh-hhHHhhHHHHHHHHHHHHHHHHHHhhcccccCcchhhHHhhHHHHHHHHHH
Q 006250 3 DRDQAILKDLARNIQLADTITKIANEAQ-SFKQDCQELQAKTEKLAVLLRQVARVSSVSYQRPTRRIVDDTEQVLDKAMQ 81 (654)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~f~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~p~~~~~~~~~~~l~~a~~ 81 (654)
-|.|--|+.|.+-.-|++ ..+++. +|-.-=+... .+|+.++. ++|++.+...+ .+..
T Consensus 36 lRkqKreE~LnKrRNl~d----v~e~a~ss~i~meqq~~---~elp~lt~-------~l~SdDie~q~--------qav~ 93 (526)
T COG5064 36 LRKQKREELLNKRRNLAD----VSEEAESSFIPMEQQFY---SELPQLTQ-------QLFSDDIEQQL--------QAVY 93 (526)
T ss_pred HHHHHHHHHHHhhccccc----ccchhhhccCchhHHhh---hhhHHHHH-------HHhhhHHHHHH--------HHHH
Confidence 356666777777777633 233333 3433222222 25666655 44554443322 3333
Q ss_pred HHHHH-h-hCC-cccchhcccCcccHHHHHHhhhcChh-----hHHHHHHhcCCCCCcc----ccccCCCCccccchhhh
Q 006250 82 LVVKC-R-ANG-ILKRVFTIIPAAAFRKTLMQLENSLG-----DVSWLIRVSASSEEND----DEYLGLPPIAANEPILC 149 (654)
Q Consensus 82 l~~~C-~-~~g-~~~r~~~i~~~~~l~~l~~lL~~~~~-----dv~~lL~~s~~~~~~~----~~~~~lp~la~~~~i~~ 149 (654)
-+|+. . .+. -.. -++.+|-+|+++.++++... +..|.|+++++++..+ .+++++|-+
T Consensus 94 kFR~~LS~E~~PPIq---~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlf-------- 162 (526)
T COG5064 94 KFRKLLSKETSPPIQ---PVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLF-------- 162 (526)
T ss_pred HHHHHhccccCCCch---hHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHH--------
Confidence 44543 2 222 222 23578999999999976544 3679999999887543 368888877
Q ss_pred hHHHHcccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCH--HHHHHHHHHHHHhcCC--c-ch
Q 006250 150 LIWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGEL--EGQENAARAIGLLGRD--A-ES 224 (654)
Q Consensus 150 ~v~~lV~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~--~~q~~Aa~AL~nLa~~--~-e~ 224 (654)
|++|.+++.+++++|.|+|+|+|.+++.+|+.|.+.|++.||+.+|.+... .+.+++.|.|+||+++ | .+
T Consensus 163 -----iqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~ 237 (526)
T COG5064 163 -----IQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPD 237 (526)
T ss_pred -----HHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCc
Confidence 999999999999999999999999999999999999999999999987764 7789999999999987 2 22
Q ss_pred HHHHHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchh
Q 006250 225 VEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISS 304 (654)
Q Consensus 225 ~~~iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~ 304 (654)
-..| ..++|.|.+|+.+.++++...|+|||++|+.+..+..+.+++.|..+.||++|.+++.+-.. +.
T Consensus 238 w~~i--sqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqt----------Pa 305 (526)
T COG5064 238 WSNI--SQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQT----------PA 305 (526)
T ss_pred hHHH--HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccC----------HH
Confidence 2222 34799999999999999999999999999998889999999999999999999876422110 11
Q ss_pred hhHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCC
Q 006250 305 LHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHN 384 (654)
Q Consensus 305 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (654)
++++ .+ | .-|++.+-|.++. .|..+
T Consensus 306 lR~v----GN---------------------I----VTG~D~QTqviI~--------------------------~G~L~ 330 (526)
T COG5064 306 LRSV----GN---------------------I----VTGSDDQTQVIIN--------------------------CGALK 330 (526)
T ss_pred HHhh----cC---------------------e----eecCccceehhee--------------------------cccHH
Confidence 2211 00 0 0022222222222 34444
Q ss_pred ccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHH
Q 006250 385 QHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEI 464 (654)
Q Consensus 385 ~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~I 464 (654)
.|..++|+ | |..++..|+|+|.|+..||.++.+.++|+..+|+|+.||.+-+-.+|++||||++|.
T Consensus 331 a~~~lLs~------------~--ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNa 396 (526)
T COG5064 331 AFRSLLSS------------P--KENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNA 396 (526)
T ss_pred HHHHHhcC------------h--hhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45554443 3 245788999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhhhhccHHHHHHHhccCC---HHH
Q 006250 465 TAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRATETRIIGPLVNLLDERE---PEV 541 (654)
Q Consensus 465 aa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~e~~~I~pLV~lL~~~~---~~v 541 (654)
+.+.-+.|++-| ..|+ .|.|.||.++|+-.+ .+|
T Consensus 397 tsgg~~~PD~ir-----------yLv~--------------------------------qG~IkpLc~~L~~~dNkiiev 433 (526)
T COG5064 397 TSGGLNRPDIIR-----------YLVS--------------------------------QGFIKPLCDLLDVVDNKIIEV 433 (526)
T ss_pred hccccCCchHHH-----------HHHH--------------------------------ccchhHHHHHHhccCccchhh
Confidence 877766665433 1222 378889999985444 444
Q ss_pred HHHHHHHHHhcc------ccCCCCCHHHHHHHHHCCCHHHHHHhhccCCcchHHHHHHHHH
Q 006250 542 IMEATVALNKFA------TTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLC 596 (654)
Q Consensus 542 ~~eAa~AL~~~a------~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~ 596 (654)
...|..-+-|.. -+.|. -...+++-++||+..+-.|=.+.+.++-..|-..+.
T Consensus 434 ~LD~~eniLk~Ge~d~~~~~~ni--n~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe 492 (526)
T COG5064 434 ALDAIENILKVGEQDRLRYGKNI--NIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIE 492 (526)
T ss_pred hHHHHHHHHhhhhHHHHhccCCc--cHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHH
Confidence 444443333322 12221 145677777999999999887777655444555444
No 6
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.4e-29 Score=273.81 Aligned_cols=383 Identities=19% Similarity=0.221 Sum_probs=286.8
Q ss_pred HHHHHHHHHhhCCcccchhcccCcccHHHHHHhhhcCh-----hhHHHHHHhcCCCCCcc----ccccCCCCccccchhh
Q 006250 78 KAMQLVVKCRANGILKRVFTIIPAAAFRKTLMQLENSL-----GDVSWLIRVSASSEEND----DEYLGLPPIAANEPIL 148 (654)
Q Consensus 78 ~a~~l~~~C~~~g~~~r~~~i~~~~~l~~l~~lL~~~~-----~dv~~lL~~s~~~~~~~----~~~~~lp~la~~~~i~ 148 (654)
.+..-+|+.-....-+..-..+..|.+|.++..|+... -+.+|.|+++++++... ...+++|.+
T Consensus 85 ~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~f------- 157 (514)
T KOG0166|consen 85 TATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIF------- 157 (514)
T ss_pred HHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHH-------
Confidence 33444455433333344444555699999999997543 35789999998876432 357777776
Q ss_pred hhHHHHcccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCH-HHHHHHHHHHHHhcCCc-chHH
Q 006250 149 CLIWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGEL-EGQENAARAIGLLGRDA-ESVE 226 (654)
Q Consensus 149 ~~v~~lV~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~-~~q~~Aa~AL~nLa~~~-e~~~ 226 (654)
+.+|.+++..++++|+|+|+|++.+++.+|+.+++.|+++||+.++...+. ...++++|+|.|||++. ....
T Consensus 158 ------i~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~ 231 (514)
T KOG0166|consen 158 ------IQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPP 231 (514)
T ss_pred ------HHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCc
Confidence 999999999999999999999999999999999999999999999988774 78899999999999985 3444
Q ss_pred HHHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhh
Q 006250 227 QIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLH 306 (654)
Q Consensus 227 ~iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~ 306 (654)
.-.-..++|.|..+|++.|+++...|+|||++|+.+.++.-+.+++.|++|.||++|...+..-.. +.+.
T Consensus 232 ~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~----------PaLR 301 (514)
T KOG0166|consen 232 FDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVT----------PALR 301 (514)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCccccc----------HHHh
Confidence 444567899999999999999999999999999988899999999999999999999865421110 0111
Q ss_pred HHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCcc
Q 006250 307 SALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQH 386 (654)
Q Consensus 307 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (654)
+-.+ ..-|++.+.|.++.++ ..|.+
T Consensus 302 ----aiGN-------------------------IvtG~d~QTq~vi~~~--------------------------~L~~l 326 (514)
T KOG0166|consen 302 ----AIGN-------------------------IVTGSDEQTQVVINSG--------------------------ALPVL 326 (514)
T ss_pred ----hccc-------------------------eeeccHHHHHHHHhcC--------------------------hHHHH
Confidence 1000 0125556666666543 33444
Q ss_pred chhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHh
Q 006250 387 QDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITA 466 (654)
Q Consensus 387 ~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa 466 (654)
..+++. .|. ..+|..|+|+|.|++.||.++.+.|.+.|.+|.|+.+|++++.++|++|||||+|++.
T Consensus 327 ~~ll~~-----------s~~--~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts 393 (514)
T KOG0166|consen 327 SNLLSS-----------SPK--ESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTS 393 (514)
T ss_pred HHHhcc-----------Ccc--hhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcc
Confidence 444332 121 3488999999999999999999999999999999999999999999999999999986
Q ss_pred hcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhhhhccHHHHHHHhccCCHHHHHHHH
Q 006250 467 VAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRATETRIIGPLVNLLDEREPEVIMEAT 546 (654)
Q Consensus 467 ~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~e~~~I~pLV~lL~~~~~~v~~eAa 546 (654)
+.. + +|+.-|++ .|+|+||.++|...+.++...+-
T Consensus 394 ~g~--~------------------~qi~yLv~-------------------------~giI~plcdlL~~~D~~ii~v~L 428 (514)
T KOG0166|consen 394 SGT--P------------------EQIKYLVE-------------------------QGIIKPLCDLLTCPDVKIILVAL 428 (514)
T ss_pred cCC--H------------------HHHHHHHH-------------------------cCCchhhhhcccCCChHHHHHHH
Confidence 554 1 33333332 37999999999888888877777
Q ss_pred HHHHhcc-ccCCCCC---HHHHHHHHHCCCHHHHHHhhccCCcchHHHHHHHHH
Q 006250 547 VALNKFA-TTENYLS---ETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLC 596 (654)
Q Consensus 547 ~AL~~~a-~~~n~~~---~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~ 596 (654)
.+|.|+- .++.+.. ...+..|.++||+..+=.|=++.++.+=..|...+.
T Consensus 429 d~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~ 482 (514)
T KOG0166|consen 429 DGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIID 482 (514)
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHH
Confidence 7776653 1111111 356788899999998887665555444333555443
No 7
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=6e-26 Score=232.75 Aligned_cols=317 Identities=22% Similarity=0.276 Sum_probs=266.6
Q ss_pred cccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcchHHHHHHcCch
Q 006250 155 IAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIVNAGVC 234 (654)
Q Consensus 155 V~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~~iv~~GaI 234 (654)
+..+.++..++|..|..+|.||+.. +++|..|...|++.||.+|-++.+..+|.++..+|.|+....|+|+.++.+|++
T Consensus 132 i~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~l 210 (550)
T KOG4224|consen 132 ILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGL 210 (550)
T ss_pred HHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCc
Confidence 5566677889999999999999977 789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCC--cHHHHHHhhccCchhhhhHHHHHhhccchhhhHHHHhh
Q 006250 235 STFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNN--IVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVAS 312 (654)
Q Consensus 235 p~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g--~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~~~~ 312 (654)
|.||.++++++.++|..++.+|+|++. +...|..+++.+ .||.||+|+++++
T Consensus 211 pvLVsll~s~d~dvqyycttaisnIaV-d~~~Rk~Laqaep~lv~~Lv~Lmd~~s------------------------- 264 (550)
T KOG4224|consen 211 PVLVSLLKSGDLDVQYYCTTAISNIAV-DRRARKILAQAEPKLVPALVDLMDDGS------------------------- 264 (550)
T ss_pred hhhhhhhccCChhHHHHHHHHhhhhhh-hHHHHHHHHhcccchHHHHHHHHhCCC-------------------------
Confidence 999999999999999999999999998 778999999988 9999999987653
Q ss_pred cCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCccchhhhh
Q 006250 313 NSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVL 392 (654)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 392 (654)
T Consensus 265 -------------------------------------------------------------------------------- 264 (550)
T KOG4224|consen 265 -------------------------------------------------------------------------------- 264 (550)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccCh
Q 006250 393 GGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNS 472 (654)
Q Consensus 393 ~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~ 472 (654)
.+.|..|..||++|+. ..+.+..|+++|+||.+++||+++-...-.....++.||+--.- |.
T Consensus 265 ----------------~kvkcqA~lALrnlas-dt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihpl-Ne 326 (550)
T KOG4224|consen 265 ----------------DKVKCQAGLALRNLAS-DTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPL-NE 326 (550)
T ss_pred ----------------hHHHHHHHHHHhhhcc-cchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccC-cc
Confidence 1245678889999997 45788899999999999999999887777777888888863222 21
Q ss_pred HhhhhccCCCchHHHHHHHHHHHHhhhcC-cchhhHHHHHHHHhhhcchh-----hhhccHHHHHHHhccCCHHHHHHHH
Q 006250 473 DLRRSAFKPTSTAAKAVLEQLLHIVEKAD-SDLLIPSIRAIGNLARTFRA-----TETRIIGPLVNLLDEREPEVIMEAT 546 (654)
Q Consensus 473 ~lrr~a~~~~s~~~~~vv~~L~~ll~~~~-~~l~~~~~~alg~la~~~~~-----~e~~~I~pLV~lL~~~~~~v~~eAa 546 (654)
.+ .+-.+...+|++++..++ ++.|..++.+|++||.+.+. .+.|.||.|..|+.++...|+.|..
T Consensus 327 ~l---------I~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseis 397 (550)
T KOG4224|consen 327 VL---------IADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEIS 397 (550)
T ss_pred cc---------eecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHH
Confidence 11 111334567999999888 66999999999999985443 3668999999999999999999977
Q ss_pred HHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhccCCcchHHHHHHHHHHHHhCCCchHHHHh
Q 006250 547 VALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIAIKQPESKTLAQ 610 (654)
Q Consensus 547 ~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~ia~~~~~~~~l~~ 610 (654)
.+++.++-.+| ...++.+.|-++.|+-++.+.++.++=+|+.+|.|++.++.+-..+.+
T Consensus 398 ac~a~Lal~d~-----~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviE 456 (550)
T KOG4224|consen 398 ACIAQLALNDN-----DKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIE 456 (550)
T ss_pred HHHHHHHhccc-----cHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHH
Confidence 77777775554 356889999999999999887777888899999999887776544443
No 8
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.2e-26 Score=235.93 Aligned_cols=344 Identities=19% Similarity=0.276 Sum_probs=278.9
Q ss_pred cccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcchHHHHHHcCch
Q 006250 155 IAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIVNAGVC 234 (654)
Q Consensus 155 V~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~~iv~~GaI 234 (654)
..+|++.+...+..|..+++|+|.. -+++-.|++.+|+.+|+.-+.++..++|.+++.+|+||+..+++|..+...|++
T Consensus 91 l~llqs~d~~Iq~aa~~alGnlAVn-~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA~sGaL 169 (550)
T KOG4224|consen 91 LALLQSCDKCIQCAAGEALGNLAVN-MENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVKIARSGAL 169 (550)
T ss_pred HHHHhCcchhhhhhhhhhhccceec-cCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhhhhhccch
Confidence 5567899999999999999999965 678999999999999999888888999999999999999999999999999999
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHHHHhhcC
Q 006250 235 STFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVASNS 314 (654)
Q Consensus 235 p~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~~~~~~ 314 (654)
.+|.+|-++.+..+|.++.++|.||.. ..++|+.++.+|++|.||.++++++. .
T Consensus 170 ~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d~--d----------------------- 223 (550)
T KOG4224|consen 170 EPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGDL--D----------------------- 223 (550)
T ss_pred hhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCCh--h-----------------------
Confidence 999998899999999999999999998 88999999999999999999987641 1
Q ss_pred CCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCccchhhhhcC
Q 006250 315 QNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVLGG 394 (654)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 394 (654)
T Consensus 224 -------------------------------------------------------------------------------- 223 (550)
T KOG4224|consen 224 -------------------------------------------------------------------------------- 223 (550)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhC--cHHHHHHhhccCChhHHHHHHHHHHHHHhhcccCh
Q 006250 395 TSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESR--ALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNS 472 (654)
Q Consensus 395 ~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~g--aL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~ 472 (654)
.+..|.-||++++. .-.+.|..++.+ .++.|+.|.+++++.+|..|..||.+|++..+...
T Consensus 224 ----------------vqyycttaisnIaV-d~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~ 286 (550)
T KOG4224|consen 224 ----------------VQYYCTTAISNIAV-DRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQR 286 (550)
T ss_pred ----------------HHHHHHHHhhhhhh-hHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhh
Confidence 11223444444443 233445555555 99999999999999999999999999998877665
Q ss_pred HhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchh----hhhccHHHHHHHhccCCHH-HHHHHHH
Q 006250 473 DLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRA----TETRIIGPLVNLLDEREPE-VIMEATV 547 (654)
Q Consensus 473 ~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~----~e~~~I~pLV~lL~~~~~~-v~~eAa~ 547 (654)
++-++ +.++.++++++++...+....+-.|-|++-..-+ .+.|+..|||++|+.++.+ ++..|+-
T Consensus 287 eiv~a----------g~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvs 356 (550)
T KOG4224|consen 287 EIVEA----------GSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVS 356 (550)
T ss_pred HHHhc----------CCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHH
Confidence 55553 3567899999876633333334445555543322 3568899999999888766 9999999
Q ss_pred HHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhccCCcchHHHHHHHHHHHHhCCCchHHHHhhhhhHHH-Hhhhhhhhh
Q 006250 548 ALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIAIKQPESKTLAQEEVLIVL-EWSFKQAHL 626 (654)
Q Consensus 548 AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~ia~~~~~~~~l~~~~~l~~l-~~~~~~~~~ 626 (654)
.|.|+|... ..+.+.|.+.|+|+.|..|+..+...+|.+--.++..++++..+.+.+...|.+|+| +|...+.+.
T Consensus 357 tLrnLAass----e~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~s~s~E 432 (550)
T KOG4224|consen 357 TLRNLAASS----EHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTGSESEE 432 (550)
T ss_pred HHHHHhhhh----hhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccCccchh
Confidence 999998422 346788999999999999998777778887667788889999999999999999988 776666666
Q ss_pred hcCccHHhHH
Q 006250 627 VAEPSIEALL 636 (654)
Q Consensus 627 ~q~~~~~~l~ 636 (654)
+++..-+++.
T Consensus 433 v~gNaAaAL~ 442 (550)
T KOG4224|consen 433 VRGNAAAALI 442 (550)
T ss_pred hcccHHHHHH
Confidence 6766655554
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.83 E-value=1.1e-17 Score=191.75 Aligned_cols=372 Identities=17% Similarity=0.201 Sum_probs=271.5
Q ss_pred HHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcchHHHHHHcCchHHHHHhhcCCCh
Q 006250 167 CDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIVNAGVCSTFAKNLKDGHM 246 (654)
Q Consensus 167 ~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~~iv~~GaIp~Lv~LL~s~~~ 246 (654)
.-|...|.|+|.+ +.+...+.+.|+|++|+++|++++.++...+++.|.+|+...+|+..|.+.|+||.|++++.+++.
T Consensus 267 rv~~~lLlNLAed-~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~ 345 (708)
T PF05804_consen 267 RVAFYLLLNLAED-PRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENE 345 (708)
T ss_pred HHHHHHHHHHhcC-hHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCH
Confidence 3566789999965 889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHHHHhhcCCCCCCCCCCCCC
Q 006250 247 KVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVASNSQNPKDHRTAPPQ 326 (654)
Q Consensus 247 ~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~ 326 (654)
+++..+.++|.||+. +++.|..+++.|+||.|+.+|.+++....+ .++ +.++....
T Consensus 346 ~l~~~aLrlL~NLSf-d~~~R~~mV~~GlIPkLv~LL~d~~~~~va-l~i--------Ly~LS~dd-------------- 401 (708)
T PF05804_consen 346 DLVNVALRLLFNLSF-DPELRSQMVSLGLIPKLVELLKDPNFREVA-LKI--------LYNLSMDD-------------- 401 (708)
T ss_pred HHHHHHHHHHHHhCc-CHHHHHHHHHCCCcHHHHHHhCCCchHHHH-HHH--------HHHhccCH--------------
Confidence 999999999999999 789999999999999999999877533221 111 11111110
Q ss_pred CCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCccchhhhhcCCCCCCCCCCChh
Q 006250 327 QQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVLGGTSTKGRESEDPT 406 (654)
Q Consensus 327 ~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~dp~ 406 (654)
+....+.| .+++|.++..+-.+ +++.
T Consensus 402 ----~~r~~f~~-----------------------------------------TdcIp~L~~~Ll~~---------~~~~ 427 (708)
T PF05804_consen 402 ----EARSMFAY-----------------------------------------TDCIPQLMQMLLEN---------SEEE 427 (708)
T ss_pred ----hhHHHHhh-----------------------------------------cchHHHHHHHHHhC---------CCcc
Confidence 00001111 11333333332221 1111
Q ss_pred HHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHH
Q 006250 407 VKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAA 486 (654)
Q Consensus 407 ~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~ 486 (654)
++..+...+.||+. +..+++.+.+.++|+.|++..-+..+.+-. ..|.||+ .|.+..+. .|
T Consensus 428 ----v~~eliaL~iNLa~-~~rnaqlm~~g~gL~~L~~ra~~~~D~lLl---KlIRNiS---~h~~~~k~-~f------- 488 (708)
T PF05804_consen 428 ----VQLELIALLINLAL-NKRNAQLMCEGNGLQSLMKRALKTRDPLLL---KLIRNIS---QHDGPLKE-LF------- 488 (708)
T ss_pred ----ccHHHHHHHHHHhc-CHHHHHHHHhcCcHHHHHHHHHhcccHHHH---HHHHHHH---hcCchHHH-HH-------
Confidence 23346778889997 789999999999999998877666554433 2566776 33333332 23
Q ss_pred HHHHHHHHHHhhhcC-cchhhHHHHHHHHhhhcchh-----hhhccHHHHHHHhcc--CCHHHHHHHHHHHHhccccCCC
Q 006250 487 KAVLEQLLHIVEKAD-SDLLIPSIRAIGNLARTFRA-----TETRIIGPLVNLLDE--REPEVIMEATVALNKFATTENY 558 (654)
Q Consensus 487 ~~vv~~L~~ll~~~~-~~l~~~~~~alg~la~~~~~-----~e~~~I~pLV~lL~~--~~~~v~~eAa~AL~~~a~~~n~ 558 (654)
...|..|++++..++ ++....|...|+||...-.. .+.+.+|-|.++|.. .+.++..|++..++.+++++
T Consensus 489 ~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~-- 566 (708)
T PF05804_consen 489 VDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDP-- 566 (708)
T ss_pred HHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCH--
Confidence 235677888888765 78999999999999853211 245789999999954 46689999999999998643
Q ss_pred CCHHHHHHHHHCCCHHHHHHhhccC--CcchHHHHHHHHHHHHhCCCchHHHHh-hhhhHHHHhhhhhhhhhcC--ccHH
Q 006250 559 LSETHSKAIINAGGVKHLIQLVYFG--EQMIQIPALTLLCYIAIKQPESKTLAQ-EEVLIVLEWSFKQAHLVAE--PSIE 633 (654)
Q Consensus 559 ~~~~~~~~Iv~~ggi~~Lv~LL~~~--~~~~q~~Al~~L~~ia~~~~~~~~l~~-~~~l~~l~~~~~~~~~~q~--~~~~ 633 (654)
+-+..+++.|-++.|+.||... |...+..-+.+...+..|...++.+.+ .+++..|. .+++| +.+.
T Consensus 567 ---~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~yli------dL~~d~N~~ir 637 (708)
T PF05804_consen 567 ---ECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLI------DLMHDKNAEIR 637 (708)
T ss_pred ---HHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHH------HHhcCCCHHHH
Confidence 4577888999999999999875 333445557777777788887887754 56666665 44455 4677
Q ss_pred hHHHHHHHHHHhhh
Q 006250 634 ALLPEAKSTLATYQ 647 (654)
Q Consensus 634 ~l~~~a~~~l~~y~ 647 (654)
.....+..++.-|.
T Consensus 638 ~~~d~~Ldii~e~d 651 (708)
T PF05804_consen 638 KVCDNALDIIAEYD 651 (708)
T ss_pred HHHHHHHHHHHHhC
Confidence 77777777776654
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.75 E-value=8.8e-16 Score=176.17 Aligned_cols=348 Identities=18% Similarity=0.159 Sum_probs=249.8
Q ss_pred cccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcchHHHHHHcCch
Q 006250 155 IAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIVNAGVC 234 (654)
Q Consensus 155 V~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~~iv~~GaI 234 (654)
|.+|.+++.+....+...|.+|+.. .+|+..+.+.|+||+|++++++++.+++..+.++|+||+.+++.|..|++.|.|
T Consensus 296 v~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlI 374 (708)
T PF05804_consen 296 VKCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLI 374 (708)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCc
Confidence 9999999999999999999999977 789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHHHHhhcC
Q 006250 235 STFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVASNS 314 (654)
Q Consensus 235 p~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~~~~~~ 314 (654)
|.|+.+|.++ ..+..+...|.+|+. ++++|..|...++||.|+++|-.+...+.... .++.++....+
T Consensus 375 PkLv~LL~d~--~~~~val~iLy~LS~-dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~e---------liaL~iNLa~~ 442 (708)
T PF05804_consen 375 PKLVELLKDP--NFREVALKILYNLSM-DDEARSMFAYTDCIPQLMQMLLENSEEEVQLE---------LIALLINLALN 442 (708)
T ss_pred HHHHHHhCCC--chHHHHHHHHHHhcc-CHhhHHHHhhcchHHHHHHHHHhCCCccccHH---------HHHHHHHHhcC
Confidence 9999999865 456779999999999 77899999999999999998765432111110 01111100000
Q ss_pred CCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCccchhhhhcC
Q 006250 315 QNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVLGG 394 (654)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 394 (654)
....+.+.. .|+.+.++...
T Consensus 443 ------------------------------~rnaqlm~~--------------------------g~gL~~L~~ra---- 462 (708)
T PF05804_consen 443 ------------------------------KRNAQLMCE--------------------------GNGLQSLMKRA---- 462 (708)
T ss_pred ------------------------------HHHHHHHHh--------------------------cCcHHHHHHHH----
Confidence 011111111 12222232210
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccC-ChhHHHHHHHHHHHHHhhcccChH
Q 006250 395 TSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKG-PEDVKHFSAMALMEITAVAEKNSD 473 (654)
Q Consensus 395 ~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~-~~~v~~~aa~AL~~Iaa~ae~~~~ 473 (654)
.+ ..||- -..-|.|++.+.......+. +.+..|+.++..+ +++...++.++|.|++....+-..
T Consensus 463 --~~---~~D~l--------LlKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ 527 (708)
T PF05804_consen 463 --LK---TRDPL--------LLKLIRNISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQ 527 (708)
T ss_pred --Hh---cccHH--------HHHHHHHHHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHH
Confidence 11 23442 23467788887655555554 4788888888876 569999999999999742211111
Q ss_pred hhhhccCCCchHHHHHHHHHHHHhhhcC--cchhhHHHHHHHHhhhcchh----hhhccHHHHHHHhc--cCCHHHHHHH
Q 006250 474 LRRSAFKPTSTAAKAVLEQLLHIVEKAD--SDLLIPSIRAIGNLARTFRA----TETRIIGPLVNLLD--EREPEVIMEA 545 (654)
Q Consensus 474 lrr~a~~~~s~~~~~vv~~L~~ll~~~~--~~l~~~~~~alg~la~~~~~----~e~~~I~pLV~lL~--~~~~~v~~eA 545 (654)
+-+ + ...++-|.+++..+. +++...++..+|.++..... .+.++|+.|+++|+ ..+.+.....
T Consensus 528 ll~-----~----~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQi 598 (708)
T PF05804_consen 528 LLQ-----E----YNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQI 598 (708)
T ss_pred HHH-----h----CCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHH
Confidence 111 0 246777888887553 67899999999999975333 24588999999994 4467889999
Q ss_pred HHHHHhccccCCCCCHHHHHHHHH-CCCHHHHHHhhccCCcchHHHHHHHHHHHHhCCCc
Q 006250 546 TVALNKFATTENYLSETHSKAIIN-AGGVKHLIQLVYFGEQMIQIPALTLLCYIAIKQPE 604 (654)
Q Consensus 546 a~AL~~~a~~~n~~~~~~~~~Iv~-~ggi~~Lv~LL~~~~~~~q~~Al~~L~~ia~~~~~ 604 (654)
++++.+|.. |.+....|++ .+.+..|+.|+...++.+...+=.+|--++.+..+
T Consensus 599 l~~f~~ll~-----h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~ 653 (708)
T PF05804_consen 599 LYVFYQLLF-----HEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEE 653 (708)
T ss_pred HHHHHHHHc-----ChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHH
Confidence 999999963 3445566654 68888999999888776655455666666554443
No 11
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.61 E-value=8.1e-14 Score=157.07 Aligned_cols=350 Identities=19% Similarity=0.189 Sum_probs=231.2
Q ss_pred HcccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCC---cchHHHHHH
Q 006250 154 QIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRD---AESVEQIVN 230 (654)
Q Consensus 154 lV~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~---~e~~~~iv~ 230 (654)
.|.+|.+.++..+.+|+..|-.++..+.+.+..+.+-||||.||.||++...++|.+|++||.||..+ ++|+-+|.+
T Consensus 238 ~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~ 317 (717)
T KOG1048|consen 238 VISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKE 317 (717)
T ss_pred HHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhh
Confidence 48899999999999999999999988888999999999999999999999999999999999999976 368999999
Q ss_pred cCchHHHHHhhcC-CChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHHH
Q 006250 231 AGVCSTFAKNLKD-GHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSAL 309 (654)
Q Consensus 231 ~GaIp~Lv~LL~s-~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~ 309 (654)
.++||.++++|+. .|.++++..+.+|+||++ ++..+..++.. ++..|-.-+-.+ |+-
T Consensus 318 ~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS-~D~lK~~ii~~-al~tLt~~vI~P----~Sg---------------- 375 (717)
T KOG1048|consen 318 LNGVPTLVRLLRHTQDDEVRELITGILWNLSS-NDALKMLIITS-ALSTLTDNVIIP----HSG---------------- 375 (717)
T ss_pred cCChHHHHHHHHhhcchHHHHHHHHHHhcccc-hhHHHHHHHHH-HHHHHHHhhccc----ccc----------------
Confidence 9999999999986 889999999999999999 45666655542 222222211100 000
Q ss_pred HhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCccchh
Q 006250 310 VASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQ 389 (654)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (654)
. ++++..
T Consensus 376 --------w----------------------~~~~~~------------------------------------------- 382 (717)
T KOG1048|consen 376 --------W----------------------EEEPAP------------------------------------------- 382 (717)
T ss_pred --------c----------------------CCCCcc-------------------------------------------
Confidence 0 000000
Q ss_pred hhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhh-CcHHHHHHhhc----cCCh--hHHHHHHHHHH
Q 006250 390 QVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTES-RALLCFAVLLE----KGPE--DVKHFSAMALM 462 (654)
Q Consensus 390 ~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~-gaL~~L~~LL~----~~~~--~v~~~aa~AL~ 462 (654)
+..+++ .+-.+++++|.|++.-+.+..+.+-+. |.+..|+..++ ..+. .--.||.-.+.
T Consensus 383 ----------~~~~~~----~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilR 448 (717)
T KOG1048|consen 383 ----------RKAEDS----TVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILR 448 (717)
T ss_pred ----------cccccc----eeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHh
Confidence 001111 123456677777766555555555554 45555554444 1211 12223333333
Q ss_pred HHHhhcc--cChHhhh----------------h--ccCCC----------------chHH--------HHHHHHHHHHhh
Q 006250 463 EITAVAE--KNSDLRR----------------S--AFKPT----------------STAA--------KAVLEQLLHIVE 498 (654)
Q Consensus 463 ~Iaa~ae--~~~~lrr----------------~--a~~~~----------------s~~~--------~~vv~~L~~ll~ 498 (654)
|++---+ -.+..++ + .|... +... ..||..=+.+|.
T Consensus 449 NLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~ 528 (717)
T KOG1048|consen 449 NLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLA 528 (717)
T ss_pred hcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHH
Confidence 3321000 0000000 0 01100 0000 125555466666
Q ss_pred hc-CcchhhHHHHHHHHhhhcchh----------hhhccHHHHHHHhccCCHHHHHHHHHHHHhccccCCCCCHHHHHHH
Q 006250 499 KA-DSDLLIPSIRAIGNLARTFRA----------TETRIIGPLVNLLDEREPEVIMEATVALNKFATTENYLSETHSKAI 567 (654)
Q Consensus 499 ~~-~~~l~~~~~~alg~la~~~~~----------~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~I 567 (654)
.. ++..+..++.||-||+....- .+.++.|||+++|+..+.+|.+.++.+|.|++.+- .+ +.+
T Consensus 529 ~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~-----rn-k~l 602 (717)
T KOG1048|consen 529 LSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI-----RN-KEL 602 (717)
T ss_pred HhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc-----hh-hhh
Confidence 43 478899999999999863211 23468899999999999999999999999998543 23 445
Q ss_pred HHCCCHHHHHHhhccCCc------chHHHHHHHHHHHH-hCCCchHHHHhhhhhHHHH
Q 006250 568 INAGGVKHLIQLVYFGEQ------MIQIPALTLLCYIA-IKQPESKTLAQEEVLIVLE 618 (654)
Q Consensus 568 v~~ggi~~Lv~LL~~~~~------~~q~~Al~~L~~ia-~~~~~~~~l~~~~~l~~l~ 618 (654)
+..++++.|++.|..+.+ .+...+...|-++. .+..+...+.+.+.++.|.
T Consensus 603 igk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~ 660 (717)
T KOG1048|consen 603 IGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLR 660 (717)
T ss_pred hhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHH
Confidence 558999999999986533 13334566666775 4555667788888888886
No 12
>PRK09687 putative lyase; Provisional
Probab=99.59 E-value=1.4e-13 Score=143.88 Aligned_cols=248 Identities=17% Similarity=0.166 Sum_probs=182.6
Q ss_pred HcccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcchHHHHHHcCc
Q 006250 154 QIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIVNAGV 233 (654)
Q Consensus 154 lV~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~~iv~~Ga 233 (654)
|+..|.+.+..+|..|+++|..+.. ..+++.+..++++.++.++..|+++|+.|...+.. ..-+
T Consensus 28 L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~~~a 91 (280)
T PRK09687 28 LFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----QDNV 91 (280)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----hHHH
Confidence 3788888899999999999988752 23677888888888999999999999998653321 2236
Q ss_pred hHHHHHh-hcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHHHHhh
Q 006250 234 CSTFAKN-LKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVAS 312 (654)
Q Consensus 234 Ip~Lv~L-L~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~~~~ 312 (654)
+|.|..+ ++++++.|+..|+.+|+++....... ...+++.|...+.
T Consensus 92 ~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~---------------------------- 138 (280)
T PRK09687 92 FNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAF---------------------------- 138 (280)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHhh----------------------------
Confidence 7888877 57778899999999999986421100 0001111111110
Q ss_pred cCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCccchhhhh
Q 006250 313 NSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVL 392 (654)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 392 (654)
T Consensus 139 -------------------------------------------------------------------------------- 138 (280)
T PRK09687 139 -------------------------------------------------------------------------------- 138 (280)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccCh
Q 006250 393 GGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNS 472 (654)
Q Consensus 393 ~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~ 472 (654)
.+++ .++..|++||+++. +. .+++.|+.+|++.+.+|+..|+++|..+. .++
T Consensus 139 ---------D~~~----~VR~~a~~aLg~~~--~~---------~ai~~L~~~L~d~~~~VR~~A~~aLg~~~---~~~- 190 (280)
T PRK09687 139 ---------DKST----NVRFAVAFALSVIN--DE---------AAIPLLINLLKDPNGDVRNWAAFALNSNK---YDN- 190 (280)
T ss_pred ---------CCCH----HHHHHHHHHHhccC--CH---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCC---CCC-
Confidence 1233 25578899998763 32 48899999999999999999999998762 111
Q ss_pred HhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhhhhccHHHHHHHhccCCHHHHHHHHHHHHhc
Q 006250 473 DLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRATETRIIGPLVNLLDEREPEVIMEATVALNKF 552 (654)
Q Consensus 473 ~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~ 552 (654)
+.+++.|+.++.+.+++++..++++||.+.. ..+||+|++.|++++ ++.+|+.||+++
T Consensus 191 --------------~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~------~~av~~Li~~L~~~~--~~~~a~~ALg~i 248 (280)
T PRK09687 191 --------------PDIREAFVAMLQDKNEEIRIEAIIGLALRKD------KRVLSVLIKELKKGT--VGDLIIEAAGEL 248 (280)
T ss_pred --------------HHHHHHHHHHhcCCChHHHHHHHHHHHccCC------hhHHHHHHHHHcCCc--hHHHHHHHHHhc
Confidence 3466889999999999999999999998763 369999999998766 788999999999
Q ss_pred cccCCCCCHHHHHHHHHCCCHHHHHHhhc-cCCcchHHHHHHHH
Q 006250 553 ATTENYLSETHSKAIINAGGVKHLIQLVY-FGEQMIQIPALTLL 595 (654)
Q Consensus 553 a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~-~~~~~~q~~Al~~L 595 (654)
.+. -.++.|.+++. ++|..++..|.++|
T Consensus 249 g~~---------------~a~p~L~~l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 249 GDK---------------TLLPVLDTLLYKFDDNEIITKAIDKL 277 (280)
T ss_pred CCH---------------hHHHHHHHHHhhCCChhHHHHHHHHH
Confidence 531 25799999997 77777877787766
No 13
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.53 E-value=2.6e-13 Score=153.07 Aligned_cols=388 Identities=19% Similarity=0.222 Sum_probs=242.2
Q ss_pred cHHHHHHhhhcChhhHHH----HHHhcCCCCCc----cccccCCCCccccchhhhhHHHHcccccCCCHHHHHHHHHHHH
Q 006250 103 AFRKTLMQLENSLGDVSW----LIRVSASSEEN----DDEYLGLPPIAANEPILCLIWEQIAILHTGSMEEKCDAAASLV 174 (654)
Q Consensus 103 ~l~~l~~lL~~~~~dv~~----lL~~s~~~~~~----~~~~~~lp~la~~~~i~~~v~~lV~lL~s~~~~~k~~Aa~aL~ 174 (654)
.+|..+..|++.+..++. .+.....+++. ....+|+|-+ |.+|.+.+.+++.+|+++|+
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kL-------------v~Ll~~~~~evq~~acgaLR 300 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKL-------------VALLDHRNDEVQRQACGALR 300 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHH-------------HHHhcCCcHHHHHHHHHHHH
Confidence 356666666665555442 11111111111 1236677776 99999999999999999999
Q ss_pred HhccCC--chhHHHHHhcCCHHHHHHhhcc-CCHHHHHHHHHHHHHhcCCcchHHHHHHcCchHHHHHhhcCC-------
Q 006250 175 SLARDN--DRYGKLIIEEGGVPPLLKLAYE-GELEGQENAARAIGLLGRDAESVEQIVNAGVCSTFAKNLKDG------- 244 (654)
Q Consensus 175 ~La~~~--~~~~~~I~e~G~Ip~LV~LL~s-~~~~~q~~Aa~AL~nLa~~~e~~~~iv~~GaIp~Lv~LL~s~------- 244 (654)
||...+ +.|+-.|.+.||||.|+++|+. +|.++++..+..||||++.+.-+..|+.. +++.|-+-+-.+
T Consensus 301 NLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~ 379 (717)
T KOG1048|consen 301 NLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEE 379 (717)
T ss_pred hhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCC
Confidence 997544 4599999999999999999996 78999999999999999997777666654 677776654211
Q ss_pred -------ChhHHHHHHHHHHHHhcCChhhHHHHHh-CCcHHHHHHhhccCchhh-hhHHHHHhhccchhhhHHHHhhcCC
Q 006250 245 -------HMKVQSVVAWAVSELASNHPKCQDHFAQ-NNIVRFLVSHLAFETVQE-HSKYAIASKQNISSLHSALVASNSQ 315 (654)
Q Consensus 245 -------~~~vq~~Aa~aL~nLa~~~~~~r~~i~~-~g~I~~LV~LL~~~~~~~-~~~~al~~~~~~~~i~~l~~~~~~~ 315 (654)
+..+-.+++++|.|++....+.|+.+.+ .|.|..|+..++..-... +...++-++ +|..-
T Consensus 380 ~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENc--------vCilR--- 448 (717)
T KOG1048|consen 380 PAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENC--------VCILR--- 448 (717)
T ss_pred CcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHH--------HHHHh---
Confidence 2457789999999999988899999998 588999999997431100 111111111 11111
Q ss_pred CCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCccchhhhhcCC
Q 006250 316 NPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVLGGT 395 (654)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 395 (654)
+++|++-..-+.....+.. ..... . +.+. |. ...|-
T Consensus 449 -------------------NLSYrl~~Evp~~~~~~~~-~~~~~-----------~-------~~~~-~~-----~~~gc 484 (717)
T KOG1048|consen 449 -------------------NLSYRLEAEVPPKYRQVLA-NIARL-----------P-------GVGP-PA-----ESVGC 484 (717)
T ss_pred -------------------hcCchhhhhcCHhhhhHhh-ccccc-----------c-------cCCC-cc-----ccccc
Confidence 1222221111111000000 00000 0 0000 00 00000
Q ss_pred C-CCCCC-CCC------hhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhh-ccCChhHHHHHHHHHHHHHh
Q 006250 396 S-TKGRE-SED------PTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLL-EKGPEDVKHFSAMALMEITA 466 (654)
Q Consensus 396 ~-~~~~~-~~d------p~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL-~~~~~~v~~~aa~AL~~Iaa 466 (654)
. .|.++ ..+ |+... -.....=||+ + -++.+-..|| ++.+..+.+.+|.||-|+++
T Consensus 485 f~~k~~k~~~~~~~~~~pe~~~--~pkG~e~Lw~-----p---------~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA 548 (717)
T KOG1048|consen 485 FGFKKRKSDDNCDDLPIPERAT--APKGSEWLWH-----P---------SVVRPYLLLLALSKNDNTLEASAGALQNLTA 548 (717)
T ss_pred ccchhhhchhcccccCCccccc--CCCCceeeec-----H---------HHHHHHHHHHHHhcchHHHHHhhhhHhhhhc
Confidence 0 00011 000 11000 0000000111 0 1222212223 55678999999999999998
Q ss_pred hcccChH-hhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhhh---hccHHHHHHHhccC-----
Q 006250 467 VAEKNSD-LRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRATE---TRIIGPLVNLLDER----- 537 (654)
Q Consensus 467 ~ae~~~~-lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~e---~~~I~pLV~lL~~~----- 537 (654)
+.-.-++ +|...|.- +.+.++|+++++.+++++...++.+|.|+++..++.+ ..+||-||+.|...
T Consensus 549 ~~~~~~~~~~~~v~~k-----ekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk~a~~~lv~~Lp~~~~~~~ 623 (717)
T KOG1048|consen 549 GLWTWSEYMRGAVFRK-----EKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIGKYAIPDLVRCLPGSGPSTS 623 (717)
T ss_pred cCCcchhHHHhhhhhh-----ccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhhcchHHHHHHhCcCCCCCcC
Confidence 7654333 33222222 2356789999999999999999999999999888764 35799999999332
Q ss_pred -CHHHHHHHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhccCC
Q 006250 538 -EPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGE 584 (654)
Q Consensus 538 -~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~ 584 (654)
+.++...++.+|.|+... +.++++.+.+.+|++.|+.|.++..
T Consensus 624 ~sedtv~~vc~tl~niv~~----~~~nAkdl~~~~g~~kL~~I~~s~~ 667 (717)
T KOG1048|consen 624 LSEDTVRAVCHTLNNIVRK----NVLNAKDLLEIKGIPKLRLISKSQH 667 (717)
T ss_pred chHHHHHHHHHhHHHHHHH----hHHHHHHHHhccChHHHHHHhcccC
Confidence 368888999999999633 3789999999999999999988753
No 14
>PRK09687 putative lyase; Provisional
Probab=99.46 E-value=6.1e-12 Score=131.63 Aligned_cols=255 Identities=17% Similarity=0.157 Sum_probs=184.1
Q ss_pred CCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcchHHHHHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHH
Q 006250 191 GGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHF 270 (654)
Q Consensus 191 G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~~iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i 270 (654)
=-+++|+.+|.+.+..++..|+++|..+.. ..+++.+..+++++++.+|..++|+|+.|.... ..
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~-~~---- 87 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRGG----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAK-RC---- 87 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc-cc----
Confidence 358899999999999999999999988763 346788899999999999999999999997522 11
Q ss_pred HhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhh
Q 006250 271 AQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISN 350 (654)
Q Consensus 271 ~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~ 350 (654)
...+++.|..++..
T Consensus 88 -~~~a~~~L~~l~~~----------------------------------------------------------------- 101 (280)
T PRK09687 88 -QDNVFNILNNLALE----------------------------------------------------------------- 101 (280)
T ss_pred -hHHHHHHHHHHHhc-----------------------------------------------------------------
Confidence 11234444444211
Q ss_pred HHhhhhhhcccCCCcccccCCcccccccCCCCCCccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHH
Q 006250 351 VVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSIC 430 (654)
Q Consensus 351 vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~ 430 (654)
.+|+ .++..|+.+||++..+....
T Consensus 102 ---------------------------------------------------D~d~----~VR~~A~~aLG~~~~~~~~~- 125 (280)
T PRK09687 102 ---------------------------------------------------DKSA----CVRASAINATGHRCKKNPLY- 125 (280)
T ss_pred ---------------------------------------------------CCCH----HHHHHHHHHHhccccccccc-
Confidence 1223 24567888888875433211
Q ss_pred HHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHH
Q 006250 431 RNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIR 510 (654)
Q Consensus 431 ~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~ 510 (654)
...++..+..++.+.+..|++.+++||.+|. + ..+++.|+.++++.+++++..++.
T Consensus 126 ----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~-----~---------------~~ai~~L~~~L~d~~~~VR~~A~~ 181 (280)
T PRK09687 126 ----SPKIVEQSQITAFDKSTNVRFAVAFALSVIN-----D---------------EAAIPLLINLLKDPNGDVRNWAAF 181 (280)
T ss_pred ----chHHHHHHHHHhhCCCHHHHHHHHHHHhccC-----C---------------HHHHHHHHHHhcCCCHHHHHHHHH
Confidence 1235566777788899999999999997652 1 346789999999999999999999
Q ss_pred HHHHhhhcchhhhhccHHHHHHHhccCCHHHHHHHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhccCCcchHHH
Q 006250 511 AIGNLARTFRATETRIIGPLVNLLDEREPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIP 590 (654)
Q Consensus 511 alg~la~~~~~~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~ 590 (654)
+||.+... ...++++|+.+|++.+.+|+.+|+++|+++.. ..++++|++.|..++ +.+.
T Consensus 182 aLg~~~~~----~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~---------------~~av~~Li~~L~~~~--~~~~ 240 (280)
T PRK09687 182 ALNSNKYD----NPDIREAFVAMLQDKNEEIRIEAIIGLALRKD---------------KRVLSVLIKELKKGT--VGDL 240 (280)
T ss_pred HHhcCCCC----CHHHHHHHHHHhcCCChHHHHHHHHHHHccCC---------------hhHHHHHHHHHcCCc--hHHH
Confidence 99998321 12589999999999999999999999999742 136899999998765 5566
Q ss_pred HHHHHHHHHhCCCchHHHHhhhhhHHHHhhhhhhhhhcCccHHhHHHHHHHHH
Q 006250 591 ALTLLCYIAIKQPESKTLAQEEVLIVLEWSFKQAHLVAEPSIEALLPEAKSTL 643 (654)
Q Consensus 591 Al~~L~~ia~~~~~~~~l~~~~~l~~l~~~~~~~~~~q~~~~~~l~~~a~~~l 643 (654)
++.+|..+ ++ ...+|.|. .+++.+....+..+|..-+
T Consensus 241 a~~ALg~i----g~------~~a~p~L~------~l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 241 IIEAAGEL----GD------KTLLPVLD------TLLYKFDDNEIITKAIDKL 277 (280)
T ss_pred HHHHHHhc----CC------HhHHHHHH------HHHhhCCChhHHHHHHHHH
Confidence 88888655 22 24568887 3333233444555554443
No 15
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.42 E-value=1.7e-11 Score=126.12 Aligned_cols=188 Identities=19% Similarity=0.149 Sum_probs=159.7
Q ss_pred HHccccc-CCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcchHHHHHHc
Q 006250 153 EQIAILH-TGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIVNA 231 (654)
Q Consensus 153 ~lV~lL~-s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~~iv~~ 231 (654)
.|+.+|+ +.++..++.|..++++.+.. +.+++.|.+.||++.+..+|.++++.+++.|.+||.|++.+.+++..|-.
T Consensus 16 ~Ll~lL~~t~dp~i~e~al~al~n~aaf-~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~- 93 (254)
T PF04826_consen 16 KLLCLLESTEDPFIQEKALIALGNSAAF-PFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKM- 93 (254)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHhhccC-hhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHH-
Confidence 3588888 56899999999999999866 88999999999999999999999999999999999999999999887754
Q ss_pred CchHHHHHhhcCC--ChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHHH
Q 006250 232 GVCSTFAKNLKDG--HMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSAL 309 (654)
Q Consensus 232 GaIp~Lv~LL~s~--~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~ 309 (654)
.|+.+.+...+. +.++|..+..+|.||+. .++++..+.. .++.|+.||.+|+.
T Consensus 94 -~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv-~~~~~~~l~~--~i~~ll~LL~~G~~--------------------- 148 (254)
T PF04826_consen 94 -YIPQVCEETVSSPLNSEVQLAGLRLLTNLTV-TNDYHHMLAN--YIPDLLSLLSSGSE--------------------- 148 (254)
T ss_pred -HHHHHHHHHhcCCCCCHHHHHHHHHHHccCC-CcchhhhHHh--hHHHHHHHHHcCCh---------------------
Confidence 477777766553 57899999999999998 5677777754 78888888876530
Q ss_pred HhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCccchh
Q 006250 310 VASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQ 389 (654)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (654)
T Consensus 149 -------------------------------------------------------------------------------- 148 (254)
T PF04826_consen 149 -------------------------------------------------------------------------------- 148 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccC-ChhHHHHHHHHHHHHHhhc
Q 006250 390 QVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKG-PEDVKHFSAMALMEITAVA 468 (654)
Q Consensus 390 ~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~-~~~v~~~aa~AL~~Iaa~a 468 (654)
+.|..+.+.|++|+. |+..++.+...+++..|+.|+++. +.++..++.+-..||..+-
T Consensus 149 --------------------~~k~~vLk~L~nLS~-np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~ 207 (254)
T PF04826_consen 149 --------------------KTKVQVLKVLVNLSE-NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENI 207 (254)
T ss_pred --------------------HHHHHHHHHHHHhcc-CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhh
Confidence 135668889999997 889999999999999999999986 6799999999999996543
No 16
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.32 E-value=1.2e-11 Score=111.10 Aligned_cols=107 Identities=23% Similarity=0.308 Sum_probs=100.5
Q ss_pred cccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCc-chHHHHHHcCc
Q 006250 155 IAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDA-ESVEQIVNAGV 233 (654)
Q Consensus 155 V~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~-e~~~~iv~~Ga 233 (654)
+.+|++++...+..|+++|.+++..++.++..+++.|++|.|+.+|.++++.++..|+++|+||+.++ +....+.+.|.
T Consensus 13 ~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~ 92 (120)
T cd00020 13 VSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGG 92 (120)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCC
Confidence 89999999999999999999999887899999999999999999999999999999999999999875 56778889999
Q ss_pred hHHHHHhhcCCChhHHHHHHHHHHHHhc
Q 006250 234 CSTFAKNLKDGHMKVQSVVAWAVSELAS 261 (654)
Q Consensus 234 Ip~Lv~LL~s~~~~vq~~Aa~aL~nLa~ 261 (654)
++.|+++|++++.++++.++|+|.+|+.
T Consensus 93 l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 93 VPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred hHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999973
No 17
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.31 E-value=4.7e-09 Score=108.40 Aligned_cols=314 Identities=16% Similarity=0.162 Sum_probs=210.0
Q ss_pred hhhHHHHcccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhcc--CCHHHHHHHHHHHHHhc-CCcch
Q 006250 148 LCLIWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYE--GELEGQENAARAIGLLG-RDAES 224 (654)
Q Consensus 148 ~~~v~~lV~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s--~~~~~q~~Aa~AL~nLa-~~~e~ 224 (654)
.+..|.+ =.+++...-.++..+|..+....|+ +.++-|...+|.+|.. .+.++.......+..-+ .++.|
T Consensus 109 ~it~~~l---a~~~~~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~n 181 (461)
T KOG4199|consen 109 LITLLEL---AESPNESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVN 181 (461)
T ss_pred hhhHHHH---hhCCchhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHH
Confidence 3555552 3467888888999999998855443 5678899999999853 34556555555555544 45789
Q ss_pred HHHHHHcCchHHHHHhhc-CCChhHHHHHHHHHHHHhcCChhhH----------HHHHhCCcHHHHHHhhccCchhhhhH
Q 006250 225 VEQIVNAGVCSTFAKNLK-DGHMKVQSVVAWAVSELASNHPKCQ----------DHFAQNNIVRFLVSHLAFETVQEHSK 293 (654)
Q Consensus 225 ~~~iv~~GaIp~Lv~LL~-s~~~~vq~~Aa~aL~nLa~~~~~~r----------~~i~~~g~I~~LV~LL~~~~~~~~~~ 293 (654)
|+.+++.|+.|.+.+.|. .+..++.....|++..|..+ ++.| ..|+++|+...|++.|.-+-
T Consensus 182 rQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~d-DDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~------ 254 (461)
T KOG4199|consen 182 RQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTD-DDIRVVFGQAHGHARTIAKEGILTALTEALQAGI------ 254 (461)
T ss_pred HHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCC-CceeeecchhhHHHHHHHHhhhHHHHHHHHHccC------
Confidence 999999999999997765 45566777799999999874 3433 44555555555555553221
Q ss_pred HHHHhhccchhhhHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcc
Q 006250 294 YAIASKQNISSLHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDS 373 (654)
Q Consensus 294 ~al~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~ 373 (654)
T Consensus 255 -------------------------------------------------------------------------------- 254 (461)
T KOG4199|consen 255 -------------------------------------------------------------------------------- 254 (461)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCCCCccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccC-Chh
Q 006250 374 HMYAMQPNHHNQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKG-PED 452 (654)
Q Consensus 374 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~-~~~ 452 (654)
||. ....+..+|..||. +++.|+.|.|+|+|..|++++.+. +..
T Consensus 255 ------------------------------dp~----~L~~l~~tl~~lAV-r~E~C~~I~e~GGl~tl~~~i~d~n~~~ 299 (461)
T KOG4199|consen 255 ------------------------------DPD----SLVSLSTTLKALAV-RDEICKSIAESGGLDTLLRCIDDSNEQG 299 (461)
T ss_pred ------------------------------Ccc----HHHHHHHHHHHHHH-HHHHHHHHHHccCHHHHHHHHhhhchhh
Confidence 111 12345667777877 789999999999999999999884 445
Q ss_pred HHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhhhhccHHHHHH
Q 006250 453 VKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRATETRIIGPLVN 532 (654)
Q Consensus 453 v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~e~~~I~pLV~ 532 (654)
+|.-+-.+++-+.+.+.++ +++..- .+.++.+.++.
T Consensus 300 ~r~l~k~~lslLralAG~D-------------------------------svKs~I-------------V~~gg~~~ii~ 335 (461)
T KOG4199|consen 300 NRTLAKTCLSLLRALAGSD-------------------------------SVKSTI-------------VEKGGLDKIIT 335 (461)
T ss_pred HHHHHHHHHHHHHHHhCCC-------------------------------chHHHH-------------HHhcChHHHHH
Confidence 5533333333333223322 111111 13467777777
Q ss_pred Hh--ccCCHHHHHHHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhccCCcc--hHHHHHHHHHHHHhCCCchHHH
Q 006250 533 LL--DEREPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQM--IQIPALTLLCYIAIKQPESKTL 608 (654)
Q Consensus 533 lL--~~~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~--~q~~Al~~L~~ia~~~~~~~~l 608 (654)
++ -..++.|..+++.+++-++- .+++|+..++|.|+....++-++..... +|.+|.+++.|++.+..+..++
T Consensus 336 l~~~h~~~p~Vi~~~~a~i~~l~L----R~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~ 411 (461)
T KOG4199|consen 336 LALRHSDDPLVIQEVMAIISILCL----RSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTI 411 (461)
T ss_pred HHHHcCCChHHHHHHHHHHHHHHh----cCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccch
Confidence 76 45677788888888888863 2579999999999999999988866443 6888999999998777665554
Q ss_pred HhhhhhHHHHhhhhhhhhhcCccHHhHHHHHHHH
Q 006250 609 AQEEVLIVLEWSFKQAHLVAEPSIEALLPEAKST 642 (654)
Q Consensus 609 ~~~~~l~~l~~~~~~~~~~q~~~~~~l~~~a~~~ 642 (654)
.-++++..|.. .-+..|++.++-...|..-
T Consensus 412 ~l~~GiE~Li~----~A~~~h~tce~~akaALRD 441 (461)
T KOG4199|consen 412 LLANGIEKLIR----TAKANHETCEAAAKAALRD 441 (461)
T ss_pred HHhccHHHHHH----HHHhcCccHHHHHHHHHHh
Confidence 44555555542 1223556666666655543
No 18
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.31 E-value=2.3e-09 Score=121.31 Aligned_cols=317 Identities=17% Similarity=0.216 Sum_probs=234.9
Q ss_pred HcccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcchHHHHHHcCc
Q 006250 154 QIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIVNAGV 233 (654)
Q Consensus 154 lV~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~~iv~~Ga 233 (654)
+...|.++++.+|..+++.|++++.+++.....+.+.+.++.++.+|.+++..+.+.|+.+|.+|+.++..-..+++.+.
T Consensus 82 L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~ 161 (503)
T PF10508_consen 82 LQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNL 161 (503)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcch
Confidence 47899999999999999999999988777788888999999999999999999999999999999999888888999999
Q ss_pred hHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHHHHhhc
Q 006250 234 CSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVASN 313 (654)
Q Consensus 234 Ip~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~~~~~ 313 (654)
++.|.+++..++..+|-.+.+++.+++..+++..+.+.+.|.++.++..|.++++
T Consensus 162 ~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDi------------------------- 216 (503)
T PF10508_consen 162 LSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDI------------------------- 216 (503)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccH-------------------------
Confidence 9999999998888899999999999999999999999999999999998865320
Q ss_pred CCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCccchhhhhc
Q 006250 314 SQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVLG 393 (654)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 393 (654)
T Consensus 217 -------------------------------------------------------------------------------- 216 (503)
T PF10508_consen 217 -------------------------------------------------------------------------------- 216 (503)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHH------HHHHHHhh
Q 006250 394 GTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAM------ALMEITAV 467 (654)
Q Consensus 394 ~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~------AL~~Iaa~ 467 (654)
-+|.+|...|..|+. +++..+.+.+.|.++-|..++.+.+.+-+..+-. ...+++..
T Consensus 217 ----------------Lvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~ 279 (503)
T PF10508_consen 217 ----------------LVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV 279 (503)
T ss_pred ----------------HHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc
Confidence 134567777788887 7778888889999999999987765443222211 12222221
Q ss_pred cccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhhhh----------ccHHHHHHHhccC
Q 006250 468 AEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRATET----------RIIGPLVNLLDER 537 (654)
Q Consensus 468 ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~e~----------~~I~pLV~lL~~~ 537 (654)
+...+-. .-+..+..|.+++++.|+..+..|..++|.++.+....+. .++...-....++
T Consensus 280 --~~~~v~~--------~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~ 349 (503)
T PF10508_consen 280 --SPQEVLE--------LYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSG 349 (503)
T ss_pred --ChHHHHH--------HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCC
Confidence 1111100 1134556677888888899999999999999976544211 2344445555778
Q ss_pred CHHHHHHHHHHHHhccccCCCCCHHHHHHHH----H---CCCHH-HHHHhhccCCcchHHHHHHHHHHHHhCC
Q 006250 538 EPEVIMEATVALNKFATTENYLSETHSKAII----N---AGGVK-HLIQLVYFGEQMIQIPALTLLCYIAIKQ 602 (654)
Q Consensus 538 ~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv----~---~ggi~-~Lv~LL~~~~~~~q~~Al~~L~~ia~~~ 602 (654)
..+++..+..||+++-..+.....++...+. + .+... .++.+++.+=+.++..++..|..++.+.
T Consensus 350 ~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~ 422 (503)
T PF10508_consen 350 STELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQP 422 (503)
T ss_pred chHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCH
Confidence 8899999999999984222211223232222 2 23333 5567777663458888888888886654
No 19
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.28 E-value=5.4e-10 Score=134.71 Aligned_cols=273 Identities=15% Similarity=0.111 Sum_probs=196.0
Q ss_pred HHHHcccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcchHHHHHH
Q 006250 151 IWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIVN 230 (654)
Q Consensus 151 v~~lV~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~~iv~ 230 (654)
+-.|+..|+++++.+|..|+..|..+.. .+.++.|+.+|+++++.++..|+.+|..+....
T Consensus 623 ~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~-------- 683 (897)
T PRK13800 623 VAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL-------- 683 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc--------
Confidence 3456788999999999999999998752 357899999999999999999999998885321
Q ss_pred cCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHHHH
Q 006250 231 AGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALV 310 (654)
Q Consensus 231 ~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~~ 310 (654)
...+.|...|.++++.+|..++.+|..+...+ ...|+..|.+.+. ..+.+.+ ..+..
T Consensus 684 -~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L~D~d~--~VR~~Av--------~aL~~ 740 (897)
T PRK13800 684 -PPAPALRDHLGSPDPVVRAAALDVLRALRAGD------------AALFAAALGDPDH--RVRIEAV--------RALVS 740 (897)
T ss_pred -CchHHHHHHhcCCCHHHHHHHHHHHHhhccCC------------HHHHHHHhcCCCH--HHHHHHH--------HHHhc
Confidence 12367888899999999999999998876422 3456777776542 1111111 11110
Q ss_pred hhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCccchhh
Q 006250 311 ASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQ 390 (654)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (654)
.. + .+. +..
T Consensus 741 ~~-------------------------------~---~~~-----------------------------------l~~-- 749 (897)
T PRK13800 741 VD-------------------------------D---VES-----------------------------------VAG-- 749 (897)
T ss_pred cc-------------------------------C---cHH-----------------------------------HHH--
Confidence 00 0 000 000
Q ss_pred hhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhhccc
Q 006250 391 VLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEK 470 (654)
Q Consensus 391 s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~ 470 (654)
....++++ ++..++.+|+.+..+. ..+++.|..+++++++.||..|+.+|.++...
T Consensus 750 --------~l~D~~~~----VR~~aa~aL~~~~~~~---------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~--- 805 (897)
T PRK13800 750 --------AATDENRE----VRIAVAKGLATLGAGG---------APAGDAVRALTGDPDPLVRAAALAALAELGCP--- 805 (897)
T ss_pred --------HhcCCCHH----HHHHHHHHHHHhcccc---------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc---
Confidence 01134554 6688999999986532 24578899999999999999999999876311
Q ss_pred ChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhhhhccHHHHHHHhccCCHHHHHHHHHHHH
Q 006250 471 NSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRATETRIIGPLVNLLDEREPEVIMEATVALN 550 (654)
Q Consensus 471 ~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~e~~~I~pLV~lL~~~~~~v~~eAa~AL~ 550 (654)
..++..|+..+++.++.++..++++||.+.. ...+++|+.+|++.+..|+++|+++|+
T Consensus 806 ----------------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~------~~a~~~L~~~L~D~~~~VR~~A~~aL~ 863 (897)
T PRK13800 806 ----------------PDDVAAATAALRASAWQVRQGAARALAGAAA------DVAVPALVEALTDPHLDVRKAAVLALT 863 (897)
T ss_pred ----------------chhHHHHHHHhcCCChHHHHHHHHHHHhccc------cchHHHHHHHhcCCCHHHHHHHHHHHh
Confidence 1233557778888889999999999998762 247899999999999999999999999
Q ss_pred hccccCCCCCHHHHHHHHHCCCHHHHHHhhccCCcchHHHHHHHHH
Q 006250 551 KFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLC 596 (654)
Q Consensus 551 ~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~ 596 (654)
++. ++ ++ ..+.|.+++...|..++..|..+|.
T Consensus 864 ~~~-~~----~~---------a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 864 RWP-GD----PA---------ARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred ccC-CC----HH---------HHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 973 11 11 2567888999888888888888874
No 20
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.26 E-value=3.3e-10 Score=116.54 Aligned_cols=200 Identities=20% Similarity=0.219 Sum_probs=154.3
Q ss_pred HHhcCCHHHHHHhhccC-CHHHHHHHHHHHHHhcCCcchHHHHHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChh
Q 006250 187 IIEEGGVPPLLKLAYEG-ELEGQENAARAIGLLGRDAESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPK 265 (654)
Q Consensus 187 I~e~G~Ip~LV~LL~s~-~~~~q~~Aa~AL~nLa~~~e~~~~iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~ 265 (654)
+++.+-+..|+.+|+.. ++.+|+.|..+++|.+..+.++..|.+.|+++.+..+|.++++.+++.|.++|.|++. +.+
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~-~~e 86 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSV-NDE 86 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCC-Chh
Confidence 46788899999999965 6999999999999999999999999999999999999999999999999999999999 567
Q ss_pred hHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCC
Q 006250 266 CQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQAN 345 (654)
Q Consensus 266 ~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 345 (654)
++..+-. .++.+++.+.+. +
T Consensus 87 n~~~Ik~--~i~~Vc~~~~s~----------------------------------------------------~------ 106 (254)
T PF04826_consen 87 NQEQIKM--YIPQVCEETVSS----------------------------------------------------P------ 106 (254)
T ss_pred hHHHHHH--HHHHHHHHHhcC----------------------------------------------------C------
Confidence 7766532 233222222110 0
Q ss_pred cchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcC
Q 006250 346 SSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKG 425 (654)
Q Consensus 346 ~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~g 425 (654)
.++ .+|..+.++|.+++.-
T Consensus 107 --------------------------------------------------------lns-----~~Q~agLrlL~nLtv~ 125 (254)
T PF04826_consen 107 --------------------------------------------------------LNS-----EVQLAGLRLLTNLTVT 125 (254)
T ss_pred --------------------------------------------------------CCC-----HHHHHHHHHHHccCCC
Confidence 001 2567789999999874
Q ss_pred ChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhc-Ccch
Q 006250 426 NLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKA-DSDL 504 (654)
Q Consensus 426 n~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~-~~~l 504 (654)
+ +.+..+. +.++.|+.||.+|++.+|.++.+.|+|++ .+|+..+-.+.. .+..-++.++... +.++
T Consensus 126 ~-~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS----~np~~~~~Ll~~------q~~~~~~~Lf~~~~~~~~ 192 (254)
T PF04826_consen 126 N-DYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLS----ENPDMTRELLSA------QVLSSFLSLFNSSESKEN 192 (254)
T ss_pred c-chhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhc----cCHHHHHHHHhc------cchhHHHHHHccCCccHH
Confidence 4 4444443 47999999999999999999999999997 355655533322 2456788888865 4778
Q ss_pred hhHHHHHHHHhhhcchh
Q 006250 505 LIPSIRAIGNLARTFRA 521 (654)
Q Consensus 505 ~~~~~~alg~la~~~~~ 521 (654)
...++.-..||...++.
T Consensus 193 l~~~l~~~~ni~~~~~~ 209 (254)
T PF04826_consen 193 LLRVLTFFENINENIKK 209 (254)
T ss_pred HHHHHHHHHHHHHhhCc
Confidence 88888888999876554
No 21
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.24 E-value=5.1e-09 Score=118.52 Aligned_cols=306 Identities=18% Similarity=0.213 Sum_probs=224.5
Q ss_pred HcccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcch-HHHHHHcC
Q 006250 154 QIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAES-VEQIVNAG 232 (654)
Q Consensus 154 lV~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~-~~~iv~~G 232 (654)
++..|++.+.+.-..++..|..+... ...... ..+..+.|...|.++++.++.-++++|.+++.+++. .+.+.+.+
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~-~~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~ 119 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSA-LSPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNE 119 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhc-cCHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCcc
Confidence 37788888888878888889888754 222222 467889999999999999999999999999987654 66778899
Q ss_pred chHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHHHHhh
Q 006250 233 VCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVAS 312 (654)
Q Consensus 233 aIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~~~~ 312 (654)
.++.++.+|.+++.++...|+.+|.+|+.+ +...+.+...+.++.|..++...+
T Consensus 120 l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~-~~~~~~l~~~~~~~~L~~l~~~~~------------------------- 173 (503)
T PF10508_consen 120 LLPLIIQCLRDPDLSVAKAAIKALKKLASH-PEGLEQLFDSNLLSKLKSLMSQSS------------------------- 173 (503)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHhCC-chhHHHHhCcchHHHHHHHHhccC-------------------------
Confidence 999999999999999999999999999994 455556667777777777775421
Q ss_pred cCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCccchhhhh
Q 006250 313 NSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVL 392 (654)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 392 (654)
T Consensus 174 -------------------------------------------------------------------------------- 173 (503)
T PF10508_consen 174 -------------------------------------------------------------------------------- 173 (503)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccCh
Q 006250 393 GGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNS 472 (654)
Q Consensus 393 ~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~ 472 (654)
+. ++..+...+.++++.+++....+.++|.++.++..|++.|.-+|.++...|.+++. ..++
T Consensus 174 ------------~~----vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g- 235 (503)
T PF10508_consen 174 ------------DI----VRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHG- 235 (503)
T ss_pred ------------HH----HHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhH-
Confidence 00 11224445677777888888889999999999999999888999999999999985 2222
Q ss_pred HhhhhccCCCchHHHHHHHHHHHHhhhcC-----cchhhHHH-HHHHHhhhcchhhhh----ccHHHHHHHhccCCHHHH
Q 006250 473 DLRRSAFKPTSTAAKAVLEQLLHIVEKAD-----SDLLIPSI-RAIGNLARTFRATET----RIIGPLVNLLDEREPEVI 542 (654)
Q Consensus 473 ~lrr~a~~~~s~~~~~vv~~L~~ll~~~~-----~~l~~~~~-~alg~la~~~~~~e~----~~I~pLV~lL~~~~~~v~ 542 (654)
.+. - ...++++.|..++...+ ..+..|+. +..|+++...+..-. .++..|.+++++.++..+
T Consensus 236 --~~y--L----~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~ 307 (503)
T PF10508_consen 236 --LQY--L----EQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIR 307 (503)
T ss_pred --HHH--H----HhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHH
Confidence 221 1 11357888998887554 23456665 677888875322111 245566677788999888
Q ss_pred HHHHHHHHhccccCCCCCHHHHHHH-HHC-CCHHHHHHh----hccCCcchHHHHHHHHHHHH
Q 006250 543 MEATVALNKFATTENYLSETHSKAI-INA-GGVKHLIQL----VYFGEQMIQIPALTLLCYIA 599 (654)
Q Consensus 543 ~eAa~AL~~~a~~~n~~~~~~~~~I-v~~-ggi~~Lv~L----L~~~~~~~q~~Al~~L~~ia 599 (654)
.-|..+|+.++++ .+....+ ... +.+++.+.- ..++...+++.++.+|.++-
T Consensus 308 ~~A~dtlg~igst-----~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il 365 (503)
T PF10508_consen 308 EVAFDTLGQIGST-----VEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASIL 365 (503)
T ss_pred HHHHHHHHHHhCC-----HHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 8899999999743 4566666 333 344555543 33444458899999999994
No 22
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.24 E-value=1e-10 Score=104.91 Aligned_cols=102 Identities=25% Similarity=0.330 Sum_probs=95.4
Q ss_pred HHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCC-cchHHHHHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhcCCh
Q 006250 186 LIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRD-AESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHP 264 (654)
Q Consensus 186 ~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~-~e~~~~iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~ 264 (654)
.+++.|+++.|+++|++++...++.++++|.+++.+ ++.+..+++.|++|.|+++|+++++.++..++|+|+||+.+.+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 467899999999999999999999999999999988 7889999999999999999999999999999999999999777
Q ss_pred hhHHHHHhCCcHHHHHHhhccCc
Q 006250 265 KCQDHFAQNNIVRFLVSHLAFET 287 (654)
Q Consensus 265 ~~r~~i~~~g~I~~LV~LL~~~~ 287 (654)
..++.+.+.|+++.|+++|..++
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~ 104 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSN 104 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCC
Confidence 88888999999999999998763
No 23
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.23 E-value=1.3e-09 Score=115.56 Aligned_cols=336 Identities=16% Similarity=0.134 Sum_probs=224.5
Q ss_pred cCCCHHHHHHHHHHHHHhccCCchh----HHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCC-cchHHHHHHcCc
Q 006250 159 HTGSMEEKCDAAASLVSLARDNDRY----GKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRD-AESVEQIVNAGV 233 (654)
Q Consensus 159 ~s~~~~~k~~Aa~aL~~La~~~~~~----~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~-~e~~~~iv~~Ga 233 (654)
...+..++..++.++...++. +-- ++.-+++|.+.+|.+...|++.++.+...+||+|+|.+ .|+|.++.+.||
T Consensus 52 ~~~~~tv~~~qssC~A~~sk~-ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgG 130 (604)
T KOG4500|consen 52 MTASDTVYLFQSSCLADRSKN-EVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGG 130 (604)
T ss_pred eeccchhhhhhHHHHHHHhhh-HHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCC
Confidence 344556677777788887754 333 34446788999999999999999999999999999987 699999999999
Q ss_pred hHHHHHhhcC---CC----hhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCc--hhhhhHHHHHhhccchh
Q 006250 234 CSTFAKNLKD---GH----MKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFET--VQEHSKYAIASKQNISS 304 (654)
Q Consensus 234 Ip~Lv~LL~s---~~----~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~--~~~~~~~al~~~~~~~~ 304 (654)
-..++++|++ .+ ++.-..+.+.|.|-.-++.+.|..+.+.|+++.|+.++--+- ...+.+. +..-. .
T Consensus 131 aqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~l-l~~f~---n 206 (604)
T KOG4500|consen 131 AQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKL-LAPFF---N 206 (604)
T ss_pred ceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHH-Hhccc---c
Confidence 8888888863 22 255667788999999889999999999999999999986542 1111100 00000 0
Q ss_pred hhHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCC
Q 006250 305 LHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHN 384 (654)
Q Consensus 305 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (654)
+-+++- ...|++...+ .++.
T Consensus 207 lls~~~------------------------e~~~~~~~d~----------sl~~-------------------------- 226 (604)
T KOG4500|consen 207 LLSFVC------------------------EMLYPFCKDC----------SLVF-------------------------- 226 (604)
T ss_pred HHHHHH------------------------Hhhhhhhccc----------hHHH--------------------------
Confidence 000100 0001110000 0000
Q ss_pred ccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHH
Q 006250 385 QHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEI 464 (654)
Q Consensus 385 ~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~I 464 (654)
.+..++..+ . + +| +..|.-.-|...+. |+..+-..++.|-+.++..|++.-+..-++.=..+++..
T Consensus 227 ~l~~ll~~~---v--~--~d------~~eM~feila~~ae-nd~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~ 292 (604)
T KOG4500|consen 227 MLLQLLPSM---V--R--ED------IDEMIFEILAKAAE-NDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKR 292 (604)
T ss_pred HHHHHHHHh---h--c--cc------hhhHHHHHHHHHhc-CcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHh
Confidence 001111110 0 1 11 34566666666664 888888899999999999999985555555544454332
Q ss_pred HhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhhhhccHHHHHHHhccCCHHHHHH
Q 006250 465 TAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRATETRIIGPLVNLLDEREPEVIME 544 (654)
Q Consensus 465 aa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~e~~~I~pLV~lL~~~~~~v~~e 544 (654)
. + + +.-++-.+|+..+.-- .. ......++..+++.+.+....
T Consensus 293 ~--~----------------------e-l~vllltGDeSMq~L~-----------~~--p~~l~~~~sw~~S~d~~l~t~ 334 (604)
T KOG4500|consen 293 I--A----------------------E-LDVLLLTGDESMQKLH-----------AD--PQFLDFLESWFRSDDSNLITM 334 (604)
T ss_pred h--h----------------------h-HhhhhhcCchHHHHHh-----------cC--cHHHHHHHHHhcCCchhHHHH
Confidence 1 1 1 2223333444333211 11 126778888999999999999
Q ss_pred HHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhcc-----CCcchHHHHHHHHHHHHhCCCchHHHHhhhhhHH
Q 006250 545 ATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYF-----GEQMIQIPALTLLCYIAIKQPESKTLAQEEVLIV 616 (654)
Q Consensus 545 Aa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~-----~~~~~q~~Al~~L~~ia~~~~~~~~l~~~~~l~~ 616 (654)
++.||+||+-. .+||.++++.|-+..|+.+|.- ++...|-.++.+|.|++..++|...++++|+...
T Consensus 335 g~LaigNfaR~-----D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvtea 406 (604)
T KOG4500|consen 335 GSLAIGNFARR-----DDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTEA 406 (604)
T ss_pred HHHHHHhhhcc-----chHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccchHHH
Confidence 99999999854 4789999999999999998764 2334677799999999999999999999976653
No 24
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.20 E-value=4.5e-09 Score=111.45 Aligned_cols=355 Identities=16% Similarity=0.138 Sum_probs=215.1
Q ss_pred cccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccC----C---HHHHHHHHHHHHHhcCC-cchHH
Q 006250 155 IAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEG----E---LEGQENAARAIGLLGRD-AESVE 226 (654)
Q Consensus 155 V~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~----~---~~~q~~Aa~AL~nLa~~-~e~~~ 226 (654)
++...|++.++.++..++|+|++.+|.++|..+.+.||-..++++|+.. + .+.-.-+...|.|-..+ ++-+.
T Consensus 93 rq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~a 172 (604)
T KOG4500|consen 93 RQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRA 172 (604)
T ss_pred HhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHH
Confidence 7778888999999999999999999999999999999977778887643 2 23344566778887765 57788
Q ss_pred HHHHcCchHHHHHhhcCCC--hhHHHHH--------------------------------------------HHHHHHHh
Q 006250 227 QIVNAGVCSTFAKNLKDGH--MKVQSVV--------------------------------------------AWAVSELA 260 (654)
Q Consensus 227 ~iv~~GaIp~Lv~LL~s~~--~~vq~~A--------------------------------------------a~aL~nLa 260 (654)
.+++.|.+|.|+.++.-+- ...-+.. -..|...+
T Consensus 173 q~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~a 252 (604)
T KOG4500|consen 173 QVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAA 252 (604)
T ss_pred HHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHh
Confidence 9999999998877764321 1111222 22222222
Q ss_pred cCChhhHHHHHhCCcHHHHHHhhcc-CchhhhhH-HHHHhhccchhhhHHHHhhcCCCCCCCCCCCCCCCCCCCcccccC
Q 006250 261 SNHPKCQDHFAQNNIVRFLVSHLAF-ETVQEHSK-YAIASKQNISSLHSALVASNSQNPKDHRTAPPQQQGNGNISKVSC 338 (654)
Q Consensus 261 ~~~~~~r~~i~~~g~I~~LV~LL~~-~~~~~~~~-~al~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 338 (654)
. ++..+-.+++.|.+.-++.+++. +++..... .++... .+=|-++ -
T Consensus 253 e-nd~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~---~~el~vl----------------------------l 300 (604)
T KOG4500|consen 253 E-NDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKR---IAELDVL----------------------------L 300 (604)
T ss_pred c-CcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHh---hhhHhhh----------------------------h
Confidence 2 11222233444555555555543 21100000 000000 0000000 0
Q ss_pred CCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHH
Q 006250 339 PMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARA 418 (654)
Q Consensus 339 ~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~A 418 (654)
++| ++.||..-... ++..++-+ .. ...| .+++.+++-|
T Consensus 301 ltG---DeSMq~L~~~p-----------------------------~~l~~~~s---w~---~S~d----~~l~t~g~La 338 (604)
T KOG4500|consen 301 LTG---DESMQKLHADP-----------------------------QFLDFLES---WF---RSDD----SNLITMGSLA 338 (604)
T ss_pred hcC---chHHHHHhcCc-----------------------------HHHHHHHH---Hh---cCCc----hhHHHHHHHH
Confidence 111 23444442211 11111111 00 0122 3578999999
Q ss_pred HHHhhcCChHHHHHHHhhCcHHHHHHhhcc-----CChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHH
Q 006250 419 LWKLSKGNLSICRNLTESRALLCFAVLLEK-----GPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQL 493 (654)
Q Consensus 419 L~~La~gn~~~~~~i~e~gaL~~L~~LL~~-----~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L 493 (654)
|+|+++ ++.+|..+++.+.+.-|+.+|.. |+.++|+.++.||.|+. -|...|+.|-+ .+|++.+
T Consensus 339 igNfaR-~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~-----IPv~nka~~~~-----aGvteaI 407 (604)
T KOG4500|consen 339 IGNFAR-RDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLM-----IPVSNKAHFAP-----AGVTEAI 407 (604)
T ss_pred HHhhhc-cchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcc-----ccCCchhhccc-----cchHHHH
Confidence 999998 78999999999999888888755 45588999999999985 23334444433 3577777
Q ss_pred HHHhhhcCcchhhHHHHHHHHhhhcchhhh-----h----ccHHHHHHHhccCCHH-HHHHHHHHHHhccccCCCCCHHH
Q 006250 494 LHIVEKADSDLLIPSIRAIGNLARTFRATE-----T----RIIGPLVNLLDEREPE-VIMEATVALNKFATTENYLSETH 563 (654)
Q Consensus 494 ~~ll~~~~~~l~~~~~~alg~la~~~~~~e-----~----~~I~pLV~lL~~~~~~-v~~eAa~AL~~~a~~~n~~~~~~ 563 (654)
+..++...|-+.---. |.+.-+..+.+ - ..+..||+-=.++++- |..|.-+-+.-|..-.. ..+-
T Consensus 408 L~~lk~~~ppv~fkll---gTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~--~kdv 482 (604)
T KOG4500|consen 408 LLQLKLASPPVTFKLL---GTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSK--YKDV 482 (604)
T ss_pred HHHHHhcCCcchHHHH---HHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhH--hhhh
Confidence 8888877765543222 22221111111 1 1355566655666655 88888777777652111 1344
Q ss_pred HHHHHHCCCHHHHHHhhccCCcchHHHHHHHHHHHH
Q 006250 564 SKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIA 599 (654)
Q Consensus 564 ~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~ia 599 (654)
..++.+.|||+++|.++....-..|-+|+.+||.++
T Consensus 483 ~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~ 518 (604)
T KOG4500|consen 483 ILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTE 518 (604)
T ss_pred HhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHH
Confidence 567889999999999998777767999999999885
No 25
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.15 E-value=2.8e-08 Score=102.76 Aligned_cols=274 Identities=15% Similarity=0.116 Sum_probs=199.1
Q ss_pred ccccc--CCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHH-hhccCCHHHHHHHHHHHHHhcCCcc--------
Q 006250 155 IAILH--TGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLK-LAYEGELEGQENAARAIGLLGRDAE-------- 223 (654)
Q Consensus 155 V~lL~--s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~-LL~s~~~~~q~~Aa~AL~nLa~~~e-------- 223 (654)
+.+|. +++.+.-......+..-+..++.||+.+++.|+.|.+.. +..+|..+..++..||++-|..+++
T Consensus 151 v~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~a 230 (461)
T KOG4199|consen 151 LKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQA 230 (461)
T ss_pred HHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchh
Confidence 55554 455666666667777776666899999999999999886 4556667788899999999987654
Q ss_pred --hHHHHHHcCchHHHHHhhcCC-ChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhc
Q 006250 224 --SVEQIVNAGVCSTFAKNLKDG-HMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQ 300 (654)
Q Consensus 224 --~~~~iv~~GaIp~Lv~LL~s~-~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~ 300 (654)
..+.|+..|++-.|++.|+-+ ++++......+|..||- ..+.-..|.+.||+..|+.++.+....+..
T Consensus 231 h~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAV-r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r-------- 301 (461)
T KOG4199|consen 231 HGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAV-RDEICKSIAESGGLDTLLRCIDDSNEQGNR-------- 301 (461)
T ss_pred hHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHH-HHHHHHHHHHccCHHHHHHHHhhhchhhHH--------
Confidence 456889999999999999874 57888899999999998 668888999999999999999764321110
Q ss_pred cchhhhHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCC
Q 006250 301 NISSLHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQP 380 (654)
Q Consensus 301 ~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~ 380 (654)
T Consensus 302 -------------------------------------------------------------------------------- 301 (461)
T KOG4199|consen 302 -------------------------------------------------------------------------------- 301 (461)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccC--ChhHHHHHH
Q 006250 381 NHHNQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKG--PEDVKHFSA 458 (654)
Q Consensus 381 ~~~~~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~--~~~v~~~aa 458 (654)
.+...+...|..|| |++.+-..|++.|+++.++.|+... ++.|-.+++
T Consensus 302 -----------------------------~l~k~~lslLralA-G~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~ 351 (461)
T KOG4199|consen 302 -----------------------------TLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVM 351 (461)
T ss_pred -----------------------------HHHHHHHHHHHHHh-CCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHH
Confidence 01223455556666 7899999999999999998887553 456777777
Q ss_pred HHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcC-cchhhHHHHHHHHhhhcchhh----hhccHHHHHHH
Q 006250 459 MALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKAD-SDLLIPSIRAIGNLARTFRAT----ETRIIGPLVNL 533 (654)
Q Consensus 459 ~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~-~~l~~~~~~alg~la~~~~~~----e~~~I~pLV~l 533 (654)
.+++-|+- -.|+..+.+|.. +++... +..+=.++. -.+|.++|+.|-|++....+. -..+|..|++.
T Consensus 352 a~i~~l~L---R~pdhsa~~ie~--G~a~~a---vqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~ 423 (461)
T KOG4199|consen 352 AIISILCL---RSPDHSAKAIEA--GAADLA---VQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRT 423 (461)
T ss_pred HHHHHHHh---cCcchHHHHHhc--chHHHH---HHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHH
Confidence 77766652 233433333322 222212 222223444 568999999999999644432 12578899998
Q ss_pred hccCCHHHHHHHHHHHHhcccc
Q 006250 534 LDEREPEVIMEATVALNKFATT 555 (654)
Q Consensus 534 L~~~~~~v~~eAa~AL~~~a~~ 555 (654)
-...++.+...|-.||.-+.|.
T Consensus 424 A~~~h~tce~~akaALRDLGc~ 445 (461)
T KOG4199|consen 424 AKANHETCEAAAKAALRDLGCD 445 (461)
T ss_pred HHhcCccHHHHHHHHHHhcCcc
Confidence 8888888888899999999764
No 26
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.02 E-value=1.6e-08 Score=121.96 Aligned_cols=246 Identities=16% Similarity=0.091 Sum_probs=176.9
Q ss_pred cCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcchHHHHHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHH
Q 006250 190 EGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDH 269 (654)
Q Consensus 190 ~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~~iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~ 269 (654)
.+.++.|+..|+++++.+++.|+.+|+.+.. .+++|.|+++|++++..|+..|+.+|..+....+
T Consensus 620 ~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~----- 684 (897)
T PRK13800 620 APSVAELAPYLADPDPGVRRTAVAVLTETTP----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP----- 684 (897)
T ss_pred chhHHHHHHHhcCCCHHHHHHHHHHHhhhcc----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC-----
Confidence 4578899999999999999999999998752 4578999999999999999999999999864221
Q ss_pred HHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchh
Q 006250 270 FAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSIS 349 (654)
Q Consensus 270 i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~ 349 (654)
..+.|..+|.+.+. ..+.+. +..+-... .++ ..
T Consensus 685 -----~~~~L~~~L~~~d~--~VR~~A--------~~aL~~~~-----------------------------~~~---~~ 717 (897)
T PRK13800 685 -----PAPALRDHLGSPDP--VVRAAA--------LDVLRALR-----------------------------AGD---AA 717 (897)
T ss_pred -----chHHHHHHhcCCCH--HHHHHH--------HHHHHhhc-----------------------------cCC---HH
Confidence 23567777765431 111111 11111000 000 00
Q ss_pred hHHhhhhhhcccCCCcccccCCcccccccCCCCCCccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHH
Q 006250 350 NVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSI 429 (654)
Q Consensus 350 ~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~ 429 (654)
. +. +....+||. ++..|++||+.+-
T Consensus 718 ~-----------------------------------l~----------~~L~D~d~~----VR~~Av~aL~~~~------ 742 (897)
T PRK13800 718 L-----------------------------------FA----------AALGDPDHR----VRIEAVRALVSVD------ 742 (897)
T ss_pred H-----------------------------------HH----------HHhcCCCHH----HHHHHHHHHhccc------
Confidence 0 00 001245664 5678999998752
Q ss_pred HHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHH
Q 006250 430 CRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSI 509 (654)
Q Consensus 430 ~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~ 509 (654)
..+.|..+|++.+.+||..++.+|..+.... ...++.|.++++++++.++..++
T Consensus 743 --------~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~------------------~~~~~~L~~ll~D~d~~VR~aA~ 796 (897)
T PRK13800 743 --------DVESVAGAATDENREVRIAVAKGLATLGAGG------------------APAGDAVRALTGDPDPLVRAAAL 796 (897)
T ss_pred --------CcHHHHHHhcCCCHHHHHHHHHHHHHhcccc------------------chhHHHHHHHhcCCCHHHHHHHH
Confidence 2245677899999999999999998874211 11356788899998999999999
Q ss_pred HHHHHhhhcchhhhhccHHHHHHHhccCCHHHHHHHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhccCCcchHH
Q 006250 510 RAIGNLARTFRATETRIIGPLVNLLDEREPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQI 589 (654)
Q Consensus 510 ~alg~la~~~~~~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~ 589 (654)
.+||.+... ...+++|+..|++.+..|+.+|++||+.+.+. ..+++|+.+|...+..++.
T Consensus 797 ~aLg~~g~~-----~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~---------------~a~~~L~~~L~D~~~~VR~ 856 (897)
T PRK13800 797 AALAELGCP-----PDDVAAATAALRASAWQVRQGAARALAGAAAD---------------VAVPALVEALTDPHLDVRK 856 (897)
T ss_pred HHHHhcCCc-----chhHHHHHHHhcCCChHHHHHHHHHHHhcccc---------------chHHHHHHHhcCCCHHHHH
Confidence 999988632 22567899999999999999999999998532 2458999999988887888
Q ss_pred HHHHHHHHH
Q 006250 590 PALTLLCYI 598 (654)
Q Consensus 590 ~Al~~L~~i 598 (654)
.|+.+|..+
T Consensus 857 ~A~~aL~~~ 865 (897)
T PRK13800 857 AAVLALTRW 865 (897)
T ss_pred HHHHHHhcc
Confidence 899999765
No 27
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=98.97 E-value=7.7e-08 Score=113.57 Aligned_cols=333 Identities=16% Similarity=0.181 Sum_probs=227.5
Q ss_pred HHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCC---HHHHHHHHHHHHHhcCC-cchHHHHHHcCchHHHH
Q 006250 163 MEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGE---LEGQENAARAIGLLGRD-AESVEQIVNAGVCSTFA 238 (654)
Q Consensus 163 ~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~---~~~q~~Aa~AL~nLa~~-~e~~~~iv~~GaIp~Lv 238 (654)
...+++-+..+..++.. ++....+...|.+|.||++|--.+ .+.++.|-.||.||... ++.+..-.+..+++.|=
T Consensus 208 t~D~ee~ar~fLemSss-~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLe 286 (2195)
T KOG2122|consen 208 TDDEEEMARTFLEMSSS-PESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLE 286 (2195)
T ss_pred cCCHHHHHHHHHHhccC-chhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHH
Confidence 34456677888888855 777888889999999999997544 57788999999999965 55544444444555544
Q ss_pred H----------hhcCC-----C--hhHHH-HHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhc
Q 006250 239 K----------NLKDG-----H--MKVQS-VVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQ 300 (654)
Q Consensus 239 ~----------LL~s~-----~--~~vq~-~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~ 300 (654)
+ .|..+ + .+-+. .|..+|..++- ++++|..+.+.|++..+-+||... |.
T Consensus 287 QIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vD----h~-------- 353 (2195)
T KOG2122|consen 287 QIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVD----HE-------- 353 (2195)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHH----HH--------
Confidence 2 23221 1 12333 56677777787 889999999999999999988531 21
Q ss_pred cchhhhHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCC
Q 006250 301 NISSLHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQP 380 (654)
Q Consensus 301 ~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~ 380 (654)
+| .+
T Consensus 354 ----mh------gp------------------------------------------------------------------ 357 (2195)
T KOG2122|consen 354 ----MH------GP------------------------------------------------------------------ 357 (2195)
T ss_pred ----hc------CC------------------------------------------------------------------
Confidence 11 00
Q ss_pred CCCCccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHh-hCcHHHHHHhhccCChhHHHHHHH
Q 006250 381 NHHNQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTE-SRALLCFAVLLEKGPEDVKHFSAM 459 (654)
Q Consensus 381 ~~~~~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e-~gaL~~L~~LL~~~~~~v~~~aa~ 459 (654)
+..|+.. ..++..|+.||-||..|...|-...-- .|.+.++|.-|.+..++++.-.|.
T Consensus 358 --------------------~tnd~~~-~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~As 416 (2195)
T KOG2122|consen 358 --------------------ETNDGEC-NALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYAS 416 (2195)
T ss_pred --------------------CCCcHHH-HHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHH
Confidence 0011111 246788999999999998877665444 478899999999999999999999
Q ss_pred HHHHHHhhcccCh--HhhhhccCCCchHHHHHHHHHHHH-hhhcCcchhhHHHHHHHHhhh-------cchhhhhccHHH
Q 006250 460 ALMEITAVAEKNS--DLRRSAFKPTSTAAKAVLEQLLHI-VEKADSDLLIPSIRAIGNLAR-------TFRATETRIIGP 529 (654)
Q Consensus 460 AL~~Iaa~ae~~~--~lrr~a~~~~s~~~~~vv~~L~~l-l~~~~~~l~~~~~~alg~la~-------~~~~~e~~~I~p 529 (654)
.|.|++=.+..|- .||.. +-|..|... +....+.-+.....|||||+. .|+++. |.+..
T Consensus 417 vLRNLSWRAD~nmKkvLrE~----------GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVD-GALaF 485 (2195)
T KOG2122|consen 417 VLRNLSWRADSNMKKVLRET----------GSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVD-GALAF 485 (2195)
T ss_pred HHHhccccccccHHHHHHhh----------hhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhccc-chHHH
Confidence 9999986665542 23321 112223222 333334445667789999996 344443 68999
Q ss_pred HHHHhccC----CHHHHHHHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhccCCcchHHHHHHHHHHHHhCCC-c
Q 006250 530 LVNLLDER----EPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIAIKQP-E 604 (654)
Q Consensus 530 LV~lL~~~----~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~ia~~~~-~ 604 (654)
||.+|.-. .-.+...|..-|.|..+-=- .+.+|...+-+.+++.-|++.|++..-++..++.++|+|++...+ +
T Consensus 486 LVg~LSY~~qs~tLaIIEsaGGILRNVSS~IA-t~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~D 564 (2195)
T KOG2122|consen 486 LVGTLSYEGQSNTLAIIESAGGILRNVSSLIA-TCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPED 564 (2195)
T ss_pred HHhhccccCCcchhhhhhcCccHHHHHHhHhh-ccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHH
Confidence 99999533 33344455555544421000 023566777899999999999999988888899999999976555 4
Q ss_pred hHHHHhhhhhHHHH
Q 006250 605 SKTLAQEEVLIVLE 618 (654)
Q Consensus 605 ~~~l~~~~~l~~l~ 618 (654)
++.|-+.|.++-|.
T Consensus 565 Qq~LwD~gAv~mLr 578 (2195)
T KOG2122|consen 565 QQMLWDDGAVPMLR 578 (2195)
T ss_pred HHHHHhcccHHHHH
Confidence 66777888888775
No 28
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=98.94 E-value=3.9e-08 Score=115.94 Aligned_cols=314 Identities=17% Similarity=0.157 Sum_probs=204.5
Q ss_pred cccccCC---CHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHH----------hhccCC-------HHHH-HHHHH
Q 006250 155 IAILHTG---SMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLK----------LAYEGE-------LEGQ-ENAAR 213 (654)
Q Consensus 155 V~lL~s~---~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~----------LL~s~~-------~~~q-~~Aa~ 213 (654)
|++|+.. +.+.|..|-.+|.|+-...++-+..=.+.-+++.|=+ +|..+. .+-| ..|..
T Consensus 241 vQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~ 320 (2195)
T KOG2122|consen 241 VQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALC 320 (2195)
T ss_pred HHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHH
Confidence 8888744 4577888999999997654444322223333333321 222221 1233 37889
Q ss_pred HHHHhcCCcchHHHHHHcCchHHHHHhhcC-----C----C---hhHHHHHHHHHHHHhcCChhhHHHHHh-CCcHHHHH
Q 006250 214 AIGLLGRDAESVEQIVNAGVCSTFAKNLKD-----G----H---MKVQSVVAWAVSELASNHPKCQDHFAQ-NNIVRFLV 280 (654)
Q Consensus 214 AL~nLa~~~e~~~~iv~~GaIp~Lv~LL~s-----~----~---~~vq~~Aa~aL~nLa~~~~~~r~~i~~-~g~I~~LV 280 (654)
+|..++.++|.|.+|-+.|++..+.+||.- + + ..++..+..||-||.-++..++..++. -|+++.+|
T Consensus 321 ~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavV 400 (2195)
T KOG2122|consen 321 TLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVV 400 (2195)
T ss_pred HHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHH
Confidence 999999999999999999999999988851 2 1 358999999999999888778777765 68899999
Q ss_pred HhhccCchhhhhHHHHHhhccchhhhHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcc
Q 006250 281 SHLAFETVQEHSKYAIASKQNISSLHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKT 360 (654)
Q Consensus 281 ~LL~~~~~~~~~~~al~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~ 360 (654)
..|.+....-+.-| .++.
T Consensus 401 AQL~s~peeL~QV~-----------AsvL--------------------------------------------------- 418 (2195)
T KOG2122|consen 401 AQLISAPEELLQVY-----------ASVL--------------------------------------------------- 418 (2195)
T ss_pred HHHhcChHHHHHHH-----------HHHH---------------------------------------------------
Confidence 99876542222211 1111
Q ss_pred cCCCcccccCCcccccccCCCCCCccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHH-hhCcH
Q 006250 361 RAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLT-ESRAL 439 (654)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~-e~gaL 439 (654)
.||+..-+.|-+++. |.|-+
T Consensus 419 -----------------------------------------------------------RNLSWRAD~nmKkvLrE~GsV 439 (2195)
T KOG2122|consen 419 -----------------------------------------------------------RNLSWRADSNMKKVLRETGSV 439 (2195)
T ss_pred -----------------------------------------------------------HhccccccccHHHHHHhhhhH
Confidence 111111111111111 12322
Q ss_pred HHHH-HhhccCChhHHHHHHHHHHHHHhhcccC-hHhhhhccCCCchHHHHHHHHHHHHhhhcCc----chhhHHHHHHH
Q 006250 440 LCFA-VLLEKGPEDVKHFSAMALMEITAVAEKN-SDLRRSAFKPTSTAAKAVLEQLLHIVEKADS----DLLIPSIRAIG 513 (654)
Q Consensus 440 ~~L~-~LL~~~~~~v~~~aa~AL~~Iaa~ae~~-~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~----~l~~~~~~alg 513 (654)
..|+ --|+..++.-.+-..-||||+++-+.+| .+++. . -+.+..|+.+|..... .+...+..-|-
T Consensus 440 taLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCa-----V----DGALaFLVg~LSY~~qs~tLaIIEsaGGILR 510 (2195)
T KOG2122|consen 440 TALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICA-----V----DGALAFLVGTLSYEGQSNTLAIIESAGGILR 510 (2195)
T ss_pred HHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhc-----c----cchHHHHHhhccccCCcchhhhhhcCccHHH
Confidence 2221 1256677777888899999998766554 23322 1 2344567777765421 12223333333
Q ss_pred Hhhhc------ch--hhhhccHHHHHHHhccCCHHHHHHHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhccCCc
Q 006250 514 NLART------FR--ATETRIIGPLVNLLDEREPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQ 585 (654)
Q Consensus 514 ~la~~------~~--~~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~ 585 (654)
|++.. .+ -.+.+.+..|+.+|++...-|.-+++.+|+|+.- .+++.+++|.+.|+++-|-+|+.+...
T Consensus 511 NVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSA----R~p~DQq~LwD~gAv~mLrnLIhSKhk 586 (2195)
T KOG2122|consen 511 NVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSA----RSPEDQQMLWDDGAVPMLRNLIHSKHK 586 (2195)
T ss_pred HHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhc----CCHHHHHHHHhcccHHHHHHHHhhhhh
Confidence 44331 11 1345679999999999999999999999999963 257889999999999999999999988
Q ss_pred chHHHHHHHHHHHHhCC
Q 006250 586 MIQIPALTLLCYIAIKQ 602 (654)
Q Consensus 586 ~~q~~Al~~L~~ia~~~ 602 (654)
++-.-++.+|.|+-.+-
T Consensus 587 MIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 587 MIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhhhhHHHHHHHHhcCC
Confidence 87777888899983333
No 29
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=1.8e-06 Score=98.40 Aligned_cols=131 Identities=18% Similarity=0.164 Sum_probs=105.5
Q ss_pred HHHcccccCC-CHHHHHHHHHHHHHh-ccCCchhHHHHHhcCCHHHHHHhhccCC-HHHHHHHHHHHHHhcCC-cchHHH
Q 006250 152 WEQIAILHTG-SMEEKCDAAASLVSL-ARDNDRYGKLIIEEGGVPPLLKLAYEGE-LEGQENAARAIGLLGRD-AESVEQ 227 (654)
Q Consensus 152 ~~lV~lL~s~-~~~~k~~Aa~aL~~L-a~~~~~~~~~I~e~G~Ip~LV~LL~s~~-~~~q~~Aa~AL~nLa~~-~e~~~~ 227 (654)
..|+.-|+.. ++..+.+|+..|+.+ ...|++.-.-+--.-.||.||.||+... .+++-.|++||++|+.- |+....
T Consensus 170 kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~ 249 (1051)
T KOG0168|consen 170 KKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAI 249 (1051)
T ss_pred HHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhhe
Confidence 3456777755 888889999888875 4455544333333457999999999774 89999999999999965 899999
Q ss_pred HHHcCchHHHHHhhc-CCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhcc
Q 006250 228 IVNAGVCSTFAKNLK-DGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAF 285 (654)
Q Consensus 228 iv~~GaIp~Lv~LL~-s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~ 285 (654)
+|++++||.|+.-|. -...++-+++..||-.|+..++ ..+.++|++...+..|.+
T Consensus 250 vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~LsylDF 305 (1051)
T KOG0168|consen 250 VVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYLDF 305 (1051)
T ss_pred eecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHHHH
Confidence 999999999998665 4789999999999999998554 578999999988888864
No 30
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=1.4e-05 Score=94.36 Aligned_cols=369 Identities=16% Similarity=0.147 Sum_probs=213.4
Q ss_pred HHHHcccccCCCHHHHHHHHHHHHHhccCCc-hhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCc-chHHHH
Q 006250 151 IWEQIAILHTGSMEEKCDAAASLVSLARDND-RYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDA-ESVEQI 228 (654)
Q Consensus 151 v~~lV~lL~s~~~~~k~~Aa~aL~~La~~~~-~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~-e~~~~i 228 (654)
+..+++..+++++..|+.|...|.++...-. ..+-.+- ...+.|.+.+.+++..++..|++|+...+..- .++...
T Consensus 120 l~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~--~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~ 197 (1075)
T KOG2171|consen 120 LQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLD--DLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEV 197 (1075)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHH--HHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHH
Confidence 4446889999999999999999999974311 1111111 12344455556666569999999999988543 343333
Q ss_pred HHc-CchHHHHHhh----cCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccch
Q 006250 229 VNA-GVCSTFAKNL----KDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNIS 303 (654)
Q Consensus 229 v~~-GaIp~Lv~LL----~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~ 303 (654)
-.. --+|.++..| ..++.+.-..+..+|-.|+...|..-..... .+|..-+++.++....+..+. .
T Consensus 198 ~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~--------~ 268 (1075)
T KOG2171|consen 198 DKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS-QIIQFSLEIAKNKELENSIRH--------L 268 (1075)
T ss_pred HHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH-HHHHHHHHHhhcccccHHHHH--------H
Confidence 322 3466666655 4566666677888888888866654333322 255555666655543322221 1
Q ss_pred hhhHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCC
Q 006250 304 SLHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHH 383 (654)
Q Consensus 304 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (654)
.+.-++..... ...+++. ...-.+..+-..|.+-+-...-++|...+ +
T Consensus 269 ALe~ivs~~e~-Ap~~~k~---------------------~~~~~~~lv~~~l~~mte~~~D~ew~~~d-------~--- 316 (1075)
T KOG2171|consen 269 ALEFLVSLSEY-APAMCKK---------------------LALLGHTLVPVLLAMMTEEEDDDEWSNED-------D--- 316 (1075)
T ss_pred HHHHHHHHHHh-hHHHhhh---------------------chhhhccHHHHHHHhcCCcccchhhcccc-------c---
Confidence 22222222111 0000000 00011122222221110000001111111 0
Q ss_pred CccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHH
Q 006250 384 NQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALME 463 (654)
Q Consensus 384 ~~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~ 463 (654)
.-..+.++| ...|.++|-.+|.|=... .+-.-.++.+..+|.+.+-.-|+.+-+||+-
T Consensus 317 -------------~ded~~~~~------~~~A~~~lDrlA~~L~g~---~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~ 374 (1075)
T KOG2171|consen 317 -------------LDEDDEETP------YRAAEQALDRLALHLGGK---QVLPPLFEALEAMLQSTEWKERHAALLALSV 374 (1075)
T ss_pred -------------cccccccCc------HHHHHHHHHHHHhcCChh---hehHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 000112334 357889999998853211 1222355666788999999999999999999
Q ss_pred HHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchh-----hhhccHHHHHHHhcc-C
Q 006250 464 ITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRA-----TETRIIGPLVNLLDE-R 537 (654)
Q Consensus 464 Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~-----~e~~~I~pLV~lL~~-~ 537 (654)
|+.|+.+. -+. --..+++-++..++++.+.|+..|+.|||.++++|.. ...+++|.|+..|++ .
T Consensus 375 i~EGc~~~---m~~-------~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~ 444 (1075)
T KOG2171|consen 375 IAEGCSDV---MIG-------NLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQ 444 (1075)
T ss_pred HHcccHHH---HHH-------HHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccC
Confidence 98777632 110 1123555666778888899999999999999998764 234678889999955 4
Q ss_pred CHHHHHHHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHH-----hhccCCcchHHHHHHHHHHHHhCC
Q 006250 538 EPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQ-----LVYFGEQMIQIPALTLLCYIAIKQ 602 (654)
Q Consensus 538 ~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~-----LL~~~~~~~q~~Al~~L~~ia~~~ 602 (654)
++.|+..|+-||-||.... .+.+++ .-++.|++ |+.++.+.+|..++.+|.-+|--.
T Consensus 445 ~~rV~ahAa~al~nf~E~~-------~~~~l~-pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA 506 (1075)
T KOG2171|consen 445 NVRVQAHAAAALVNFSEEC-------DKSILE-PYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAA 506 (1075)
T ss_pred chHHHHHHHHHHHHHHHhC-------cHHHHH-HHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Confidence 6689999999999996322 122322 22333333 455566778888999998886533
No 31
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=9.6e-06 Score=87.55 Aligned_cols=133 Identities=17% Similarity=0.122 Sum_probs=115.6
Q ss_pred HHHHcccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcchHHHHHH
Q 006250 151 IWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIVN 230 (654)
Q Consensus 151 v~~lV~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~~iv~ 230 (654)
|..||+.|...+.+.-.-...-|..|+-. .+|+..+.+.|.|..|+++....++++......-|.|++.+...+..|+.
T Consensus 306 V~mLVKaLdr~n~~Ll~lv~~FLkKLSIf-~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv~ 384 (791)
T KOG1222|consen 306 VAMLVKALDRSNSSLLTLVIKFLKKLSIF-DENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKMVN 384 (791)
T ss_pred HHHHHHHHcccchHHHHHHHHHHHHhhhh-ccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHHhh
Confidence 55568888888878777778888889876 67999999999999999999999999999999999999999999999999
Q ss_pred cCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCc
Q 006250 231 AGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFET 287 (654)
Q Consensus 231 ~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~ 287 (654)
.|-+|.|+.+|.+... ..-|...|..++. ++..+..+....+|+.|...+-+++
T Consensus 385 ~GllP~l~~ll~~d~~--~~iA~~~lYh~S~-dD~~K~MfayTdci~~lmk~v~~~~ 438 (791)
T KOG1222|consen 385 GGLLPHLASLLDSDTK--HGIALNMLYHLSC-DDDAKAMFAYTDCIKLLMKDVLSGT 438 (791)
T ss_pred ccchHHHHHHhCCccc--chhhhhhhhhhcc-CcHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999987643 3447788889998 6688899999999999998776654
No 32
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.57 E-value=1.4e-05 Score=90.70 Aligned_cols=329 Identities=14% Similarity=0.127 Sum_probs=195.8
Q ss_pred hhhHHHHcccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCC-cchHH
Q 006250 148 LCLIWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRD-AESVE 226 (654)
Q Consensus 148 ~~~v~~lV~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~-~e~~~ 226 (654)
...+..+.+-|+++++..|..|.++|.++.. ++.... .++++.++|.++++.+++.|+.++..+... ++.
T Consensus 78 ~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~--~~~~~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~-- 148 (526)
T PF01602_consen 78 ILIINSLQKDLNSPNPYIRGLALRTLSNIRT--PEMAEP-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL-- 148 (526)
T ss_dssp HHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S--HHHHHH-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC--
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc--cchhhH-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH--
Confidence 3445666778889999999999999999882 444433 478889999999999999999999999854 332
Q ss_pred HHHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhh
Q 006250 227 QIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLH 306 (654)
Q Consensus 227 ~iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~ 306 (654)
+... .++.+.++|.+.++.++..|+.++..+ ..++.... ..++.++..|..-- .....|.... .++
T Consensus 149 -~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~-----~~~~~~~~~L~~~l-~~~~~~~q~~-----il~ 214 (526)
T PF01602_consen 149 -VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK-----SLIPKLIRILCQLL-SDPDPWLQIK-----ILR 214 (526)
T ss_dssp -HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT-----THHHHHHHHHHHHH-TCCSHHHHHH-----HHH
T ss_pred -HHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh-----hhHHHHHHHhhhcc-cccchHHHHH-----HHH
Confidence 2222 589999999989999999999999999 32322111 34455544443100 0011221110 111
Q ss_pred HHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcch--hhHHhhhhhhcccCCCcccccCCcccccccCCCCCC
Q 006250 307 SALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSI--SNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHN 384 (654)
Q Consensus 307 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i--~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (654)
.+... ...++... ..++.
T Consensus 215 ~l~~~-----------------------------~~~~~~~~~~~~~i~------------------------------- 234 (526)
T PF01602_consen 215 LLRRY-----------------------------APMEPEDADKNRIIE------------------------------- 234 (526)
T ss_dssp HHTTS-----------------------------TSSSHHHHHHHHHHH-------------------------------
T ss_pred HHHhc-----------------------------ccCChhhhhHHHHHH-------------------------------
Confidence 11000 00000000 00000
Q ss_pred ccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHH
Q 006250 385 QHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEI 464 (654)
Q Consensus 385 ~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~I 464 (654)
.+..++.+ ....+.-.|++++..+.. +.. .-..++.+|.++|.+.+.++|+-+..+|..|
T Consensus 235 ~l~~~l~s--------------~~~~V~~e~~~~i~~l~~-~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l 294 (526)
T PF01602_consen 235 PLLNLLQS--------------SSPSVVYEAIRLIIKLSP-SPE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQL 294 (526)
T ss_dssp HHHHHHHH--------------HHHHHHHHHHHHHHHHSS-SHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHH
T ss_pred HHHHHhhc--------------cccHHHHHHHHHHHHhhc-chH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHh
Confidence 01111111 113677777888877764 222 3446788888888888888888888888777
Q ss_pred HhhcccChHhhhhccCCCchHHHHHHHHHHHHhh-hcCcchhhHHHHHHHHhhhcchhhhhccHHHHHHHh-ccCCHHHH
Q 006250 465 TAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVE-KADSDLLIPSIRAIGNLARTFRATETRIIGPLVNLL-DEREPEVI 542 (654)
Q Consensus 465 aa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~-~~~~~l~~~~~~alg~la~~~~~~e~~~I~pLV~lL-~~~~~~v~ 542 (654)
+.. ..+... -....+..+. +.+..++..+...|..++..-.. ..+++-|.+.+ +..+.+++
T Consensus 295 ~~~--------------~~~~v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~--~~Il~eL~~~l~~~~d~~~~ 357 (526)
T PF01602_consen 295 AQS--------------NPPAVF-NQSLILFFLLYDDDPSIRKKALDLLYKLANESNV--KEILDELLKYLSELSDPDFR 357 (526)
T ss_dssp CCH--------------CHHHHG-THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHH--HHHHHHHHHHHHHC--HHHH
T ss_pred hcc--------------cchhhh-hhhhhhheecCCCChhHHHHHHHHHhhcccccch--hhHHHHHHHHHHhccchhhh
Confidence 521 112222 2222333444 55677888888888877742222 23788888888 44488888
Q ss_pred HHHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhccCCcchHHHHHHHHHHHHhCCCch
Q 006250 543 MEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIAIKQPES 605 (654)
Q Consensus 543 ~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~ia~~~~~~ 605 (654)
.+++.+|+.++..- +..... .+..+++++..+.+.+...+...++.+..+.++.
T Consensus 358 ~~~i~~I~~la~~~----~~~~~~-----~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~ 411 (526)
T PF01602_consen 358 RELIKAIGDLAEKF----PPDAEW-----YVDTLLKLLEISGDYVSNEIINVIRDLLSNNPEL 411 (526)
T ss_dssp HHHHHHHHHHHHHH----GSSHHH-----HHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTT
T ss_pred hhHHHHHHHHHhcc----CchHHH-----HHHHHHHhhhhccccccchHHHHHHHHhhcChhh
Confidence 88888888876321 222222 3578888888766656666788888887666553
No 33
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.56 E-value=5.7e-06 Score=93.94 Aligned_cols=283 Identities=20% Similarity=0.242 Sum_probs=165.1
Q ss_pred HcccccCC--CHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcchHHHHHHc
Q 006250 154 QIAILHTG--SMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIVNA 231 (654)
Q Consensus 154 lV~lL~s~--~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~~iv~~ 231 (654)
+.+.+.+. +...|..+...|..+...+.+. .-+.+..++++.+.+...++-+--++..+...++..-.+
T Consensus 9 l~~~~~~~~~~~~~~~~~l~kli~~~~~G~~~------~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l--- 79 (526)
T PF01602_consen 9 LAKILNSFKIDISKKKEALKKLIYLMMLGYDI------SFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLIL--- 79 (526)
T ss_dssp HHHHHHCSSTHHHHHHHHHHHHHHHHHTT---------GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHH---
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHcCCCC------chHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHH---
Confidence 34555555 7778888887777775432322 268889999999888999888777777777654332222
Q ss_pred CchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHHHHh
Q 006250 232 GVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVA 311 (654)
Q Consensus 232 GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~~~ 311 (654)
++..|.+=|.++++.++..|..+|++++. ++..+. .++.+..+|.++.
T Consensus 80 -~~n~l~kdl~~~n~~~~~lAL~~l~~i~~--~~~~~~-----l~~~v~~ll~~~~------------------------ 127 (526)
T PF01602_consen 80 -IINSLQKDLNSPNPYIRGLALRTLSNIRT--PEMAEP-----LIPDVIKLLSDPS------------------------ 127 (526)
T ss_dssp -HHHHHHHHHCSSSHHHHHHHHHHHHHH-S--HHHHHH-----HHHHHHHHHHSSS------------------------
T ss_pred -HHHHHHHhhcCCCHHHHHHHHhhhhhhcc--cchhhH-----HHHHHHHHhcCCc------------------------
Confidence 67788888999999999999999999984 443332 3455555554332
Q ss_pred hcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCccchhhh
Q 006250 312 SNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQV 391 (654)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 391 (654)
T Consensus 128 -------------------------------------------------------------------------------- 127 (526)
T PF01602_consen 128 -------------------------------------------------------------------------------- 127 (526)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccC
Q 006250 392 LGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKN 471 (654)
Q Consensus 392 ~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~ 471 (654)
| .++..|+.|+.++.+.+++... .. .++.+.++|++.+..|+..|+.++.+| ..+
T Consensus 128 -------------~----~VRk~A~~~l~~i~~~~p~~~~---~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i----~~~ 182 (526)
T PF01602_consen 128 -------------P----YVRKKAALALLKIYRKDPDLVE---DE-LIPKLKQLLSDKDPSVVSAALSLLSEI----KCN 182 (526)
T ss_dssp -------------H----HHHHHHHHHHHHHHHHCHCCHH---GG-HHHHHHHHTTHSSHHHHHHHHHHHHHH----HCT
T ss_pred -------------h----HHHHHHHHHHHHHhccCHHHHH---HH-HHHHHhhhccCCcchhHHHHHHHHHHH----ccC
Confidence 1 2344556666666554443222 11 366666667666677777777776666 111
Q ss_pred hHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhhh--hccHHHHHHHhccCCHHHHHHHHHHH
Q 006250 472 SDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRATE--TRIIGPLVNLLDEREPEVIMEATVAL 549 (654)
Q Consensus 472 ~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~e--~~~I~pLV~lL~~~~~~v~~eAa~AL 549 (654)
++... ......+..|.+++...++-++...++.+..+++...... ..+++++..+|++....|..||+.++
T Consensus 183 ~~~~~-------~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i 255 (526)
T PF01602_consen 183 DDSYK-------SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLI 255 (526)
T ss_dssp HHHHT-------THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhh-------hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 11100 1123344555555555555566666666666555444333 34566666666666666666666666
Q ss_pred HhccccCCCCCHHHHHHHHHCCCHHHHHHhhccCCcchHHHHHHHHHHHH
Q 006250 550 NKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIA 599 (654)
Q Consensus 550 ~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~ia 599 (654)
.++... .. .-..++++|+++|.++++.++..++.+|..++
T Consensus 256 ~~l~~~-----~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~ 295 (526)
T PF01602_consen 256 IKLSPS-----PE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLA 295 (526)
T ss_dssp HHHSSS-----HH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHC
T ss_pred HHhhcc-----hH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhh
Confidence 655311 11 12234556666666555555555666665554
No 34
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.55 E-value=3.6e-06 Score=90.41 Aligned_cols=276 Identities=19% Similarity=0.208 Sum_probs=188.2
Q ss_pred hHHHHHhcCCHHHHHHhhccCCHH--HHHHHHHHHHHhcCCcchHHHHHHcCchHHHHHhhcC-CChhHHHHHHHHHHHH
Q 006250 183 YGKLIIEEGGVPPLLKLAYEGELE--GQENAARAIGLLGRDAESVEQIVNAGVCSTFAKNLKD-GHMKVQSVVAWAVSEL 259 (654)
Q Consensus 183 ~~~~I~e~G~Ip~LV~LL~s~~~~--~q~~Aa~AL~nLa~~~e~~~~iv~~GaIp~Lv~LL~s-~~~~vq~~Aa~aL~nL 259 (654)
..+.|...|++..|++++..++.+ ++.+|+..|-.+.. .+|++.|+.-| +..+..+-+. ...+.+..++..|.+|
T Consensus 172 LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~-aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 172 LCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV-AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM 249 (832)
T ss_pred hhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh-hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence 456777789999999999998854 57889988877654 57888888877 5555555544 4578888999999999
Q ss_pred hcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCC
Q 006250 260 ASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCP 339 (654)
Q Consensus 260 a~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 339 (654)
-.++++....+++.|++...+.-.+
T Consensus 250 FKHSeet~~~Lvaa~~lD~vl~~~r------------------------------------------------------- 274 (832)
T KOG3678|consen 250 FKHSEETCQRLVAAGGLDAVLYWCR------------------------------------------------------- 274 (832)
T ss_pred hhhhHHHHHHHHhhcccchheeecc-------------------------------------------------------
Confidence 9988777777777766443222111
Q ss_pred CCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHH
Q 006250 340 MPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARAL 419 (654)
Q Consensus 340 ~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL 419 (654)
-.||. +.+.||-||
T Consensus 275 --------------------------------------------------------------Rt~P~----lLRH~ALAL 288 (832)
T KOG3678|consen 275 --------------------------------------------------------------RTDPA----LLRHCALAL 288 (832)
T ss_pred --------------------------------------------------------------cCCHH----HHHHHHHHh
Confidence 01232 567899999
Q ss_pred HHhhc-CChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhh
Q 006250 420 WKLSK-GNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVE 498 (654)
Q Consensus 420 ~~La~-gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~ 498 (654)
+|++- |.-+.+++|++.++-.-|--|--+.|+-.+++||.|+.-|+.+.|-.++.|++. .-+.|+.|+..+.
T Consensus 289 ~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat~KE~E~~VrkS~-------TlaLVEPlva~~D 361 (832)
T KOG3678|consen 289 GNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLATNKEVEREVRKSG-------TLALVEPLVASLD 361 (832)
T ss_pred hhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhhhhhhhHHHhhcc-------chhhhhhhhhccC
Confidence 99886 566788899999998888877888888999999999999988777777777752 1346677766654
Q ss_pred hcCcchhhHHHHHHHHhhhcchhh-hh---ccHHHHHHHhccCCHHHHHHHHHHHHhccccCCCCCHHHHHHHHHCCCHH
Q 006250 499 KADSDLLIPSIRAIGNLARTFRAT-ET---RIIGPLVNLLDEREPEVIMEATVALNKFATTENYLSETHSKAIINAGGVK 574 (654)
Q Consensus 499 ~~~~~l~~~~~~alg~la~~~~~~-e~---~~I~pLV~lL~~~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~ 574 (654)
- |..||..... +. .-+..||-+|++.--+.+.-+++-|+--+.... ....-+.+-+-|+|.
T Consensus 362 P-------------~~FARD~hd~aQG~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaIKs--~Q~K~kVFseIGAIQ 426 (832)
T KOG3678|consen 362 P-------------GRFARDAHDYAQGRGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAAIKS--LQGKTKVFSEIGAIQ 426 (832)
T ss_pred c-------------chhhhhhhhhhccCChHHHHHhhhhhhcchhhhhhhHHHHHHHHHHHHH--hccchhHHHHHHHHH
Confidence 3 3444432221 11 236778888887665555555544433221110 011235667889999
Q ss_pred HHHHhhccCCcchHHHHHHHHHHHHhCCC
Q 006250 575 HLIQLVYFGEQMIQIPALTLLCYIAIKQP 603 (654)
Q Consensus 575 ~Lv~LL~~~~~~~q~~Al~~L~~ia~~~~ 603 (654)
.|-++..+.|+..-.-|-.+|.-|-..+|
T Consensus 427 aLKevaSS~d~vaakfAseALtviGEEVP 455 (832)
T KOG3678|consen 427 ALKEVASSPDEVAAKFASEALTVIGEEVP 455 (832)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHhccccC
Confidence 99999988887433335566665544444
No 35
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.54 E-value=3.4e-07 Score=83.64 Aligned_cols=125 Identities=14% Similarity=-0.014 Sum_probs=113.6
Q ss_pred hhhHHHHccccc-CCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcchHH
Q 006250 148 LCLIWEQIAILH-TGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVE 226 (654)
Q Consensus 148 ~~~v~~lV~lL~-s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~ 226 (654)
+.++..||.-.+ ..+.+.|++-..-|.|.|-+ |.|...+.+..++..+|..|.+.+..+.+-+..+|+|+|-++.|++
T Consensus 15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~ 93 (173)
T KOG4646|consen 15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAK 93 (173)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHH
Confidence 467777787776 56899999999999999966 9999999999999999999999999999999999999999999999
Q ss_pred HHHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhC
Q 006250 227 QIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQN 273 (654)
Q Consensus 227 ~iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~ 273 (654)
.|++++++|.++..|+|+.+.+...++.++..|+-.....|+.+...
T Consensus 94 ~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p 140 (173)
T KOG4646|consen 94 FIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSP 140 (173)
T ss_pred HHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccH
Confidence 99999999999999999999999999999999998777778877653
No 36
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=6.7e-06 Score=86.77 Aligned_cols=128 Identities=30% Similarity=0.332 Sum_probs=116.3
Q ss_pred cCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCC-cchHHHHHHcCchHHH
Q 006250 159 HTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRD-AESVEQIVNAGVCSTF 237 (654)
Q Consensus 159 ~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~-~e~~~~iv~~GaIp~L 237 (654)
.+.+.+.|+.|..-|..+..+ -+|...++..||.++|+.+|++++..+++.|+|.|+.++.+ |..+..+++.|+.+.|
T Consensus 93 ~s~~le~ke~ald~Le~lve~-iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVED-IDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL 171 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHh-hhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence 355889999999999999954 78999999999999999999999999999999999999976 7889999999999999
Q ss_pred HHhhcCC-ChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCc
Q 006250 238 AKNLKDG-HMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFET 287 (654)
Q Consensus 238 v~LL~s~-~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~ 287 (654)
+..|.+. +..++..|..|++.+-.+.+...+.|...++...|...|.+++
T Consensus 172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~ 222 (342)
T KOG2160|consen 172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNN 222 (342)
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCC
Confidence 9999865 4678899999999999999999999999999999999998753
No 37
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.49 E-value=1.7e-07 Score=68.92 Aligned_cols=41 Identities=39% Similarity=0.578 Sum_probs=38.7
Q ss_pred CchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcC
Q 006250 180 NDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGR 220 (654)
Q Consensus 180 ~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~ 220 (654)
++++++.|++.|+||+|++||++++++++++|+|||+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 47899999999999999999999999999999999999974
No 38
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.43 E-value=3.2e-05 Score=85.07 Aligned_cols=131 Identities=16% Similarity=-0.001 Sum_probs=101.0
Q ss_pred cccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCC-HHHHHHHHHHHHHhcCCcchHHHHHHcCc
Q 006250 155 IAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGE-LEGQENAARAIGLLGRDAESVEQIVNAGV 233 (654)
Q Consensus 155 V~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~-~~~q~~Aa~AL~nLa~~~e~~~~iv~~Ga 233 (654)
+.+|+.++.-....|+..|..+...+..+.......-.+..|...|++++ ...+.-++.+|..|...++.|..+.+.++
T Consensus 107 l~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~ 186 (429)
T cd00256 107 FNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADG 186 (429)
T ss_pred HHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccC
Confidence 56888888899999999999997543322111111112335555666553 67888889999999999999999999999
Q ss_pred hHHHHHhhcCC--ChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccC
Q 006250 234 CSTFAKNLKDG--HMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFE 286 (654)
Q Consensus 234 Ip~Lv~LL~s~--~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~ 286 (654)
+++|+.+|+.. ...++..+.-++.-|+- +++..+.+.+.+.|+.|+.+++..
T Consensus 187 v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~l~~i~k~s 240 (429)
T cd00256 187 VPTLVKLLSNATLGFQLQYQSIFCIWLLTF-NPHAAEVLKRLSLIQDLSDILKES 240 (429)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHhc-cHHHHHhhccccHHHHHHHHHHhh
Confidence 99999999863 45788999999999998 566777777889999999999864
No 39
>PTZ00429 beta-adaptin; Provisional
Probab=98.37 E-value=0.00066 Score=79.99 Aligned_cols=304 Identities=15% Similarity=0.159 Sum_probs=185.6
Q ss_pred hhhHHHHcccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcchHHH
Q 006250 148 LCLIWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQ 227 (654)
Q Consensus 148 ~~~v~~lV~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~~ 227 (654)
...+..+.+-|++.++.+|..|.++|+++-. +..... .++++.+.|.+.++-+++.|+-++.+|-.... +.
T Consensus 104 lLaINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~e~-----l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--el 174 (746)
T PTZ00429 104 LLAVNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVLEY-----TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--QL 174 (746)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHHHH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--cc
Confidence 3456677888899999999999999998863 333333 46788889999999999999999999975422 34
Q ss_pred HHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhH
Q 006250 228 IVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHS 307 (654)
Q Consensus 228 iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~ 307 (654)
+.+.|-++.|.++|.+.++.|+.+|..+|..+...+++.-+ ...+.+..|+..|..- ..|.-.. -++.
T Consensus 175 v~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~--l~~~~~~~Ll~~L~e~-----~EW~Qi~-----IL~l 242 (746)
T PTZ00429 175 FYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE--SSNEWVNRLVYHLPEC-----NEWGQLY-----ILEL 242 (746)
T ss_pred ccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH--HHHHHHHHHHHHhhcC-----ChHHHHH-----HHHH
Confidence 45678899999999999999999999999999875553211 2234566666666432 2332111 1222
Q ss_pred HHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCccc
Q 006250 308 ALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQ 387 (654)
Q Consensus 308 l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (654)
+.... + .+......++... ..+
T Consensus 243 L~~y~-P----------------------------~~~~e~~~il~~l-~~~---------------------------- 264 (746)
T PTZ00429 243 LAAQR-P----------------------------SDKESAETLLTRV-LPR---------------------------- 264 (746)
T ss_pred HHhcC-C----------------------------CCcHHHHHHHHHH-HHH----------------------------
Confidence 22110 0 0011111221110 000
Q ss_pred hhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCC-hHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHh
Q 006250 388 DQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGN-LSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITA 466 (654)
Q Consensus 388 ~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn-~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa 466 (654)
+. +.++. +.-.|++++.++.... ++..+.+ -.+.-.+|+.|+ +++.++|+-+...|..|..
T Consensus 265 --Lq----------~~N~A----VVl~Aik~il~l~~~~~~~~~~~~-~~rl~~pLv~L~-ss~~eiqyvaLr~I~~i~~ 326 (746)
T PTZ00429 265 --MS----------HQNPA----VVMGAIKVVANLASRCSQELIERC-TVRVNTALLTLS-RRDAETQYIVCKNIHALLV 326 (746)
T ss_pred --hc----------CCCHH----HHHHHHHHHHHhcCcCCHHHHHHH-HHHHHHHHHHhh-CCCccHHHHHHHHHHHHHH
Confidence 00 11232 4457888888887532 2222211 122335667764 5678899988877766653
Q ss_pred hcccChHhhh----hccC-CCch------------------HHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhhh
Q 006250 467 VAEKNSDLRR----SAFK-PTST------------------AAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRATE 523 (654)
Q Consensus 467 ~ae~~~~lrr----~a~~-~~s~------------------~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~e 523 (654)
. .|.+=. ..|. .+.| -+..+++.|..-+.+.|.++...++++||.||..+...-
T Consensus 327 ~---~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~a 403 (746)
T PTZ00429 327 I---FPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDSVA 403 (746)
T ss_pred H---CHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChHHH
Confidence 2 222111 1111 1111 113355566666666677899999999999999887766
Q ss_pred hccHHHHHHHhccCCHHHHHHHHHHHHhc
Q 006250 524 TRIIGPLVNLLDEREPEVIMEATVALNKF 552 (654)
Q Consensus 524 ~~~I~pLV~lL~~~~~~v~~eAa~AL~~~ 552 (654)
...+..|+++|+++.. +..+++.++.++
T Consensus 404 ~~cV~~Ll~ll~~~~~-~v~e~i~vik~I 431 (746)
T PTZ00429 404 PDCANLLLQIVDRRPE-LLPQVVTAAKDI 431 (746)
T ss_pred HHHHHHHHHHhcCCch-hHHHHHHHHHHH
Confidence 6788888888876544 334566666555
No 40
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.30 E-value=1.2e-06 Score=64.29 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=38.7
Q ss_pred ChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHh
Q 006250 426 NLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITA 466 (654)
Q Consensus 426 n~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa 466 (654)
|+++.+.|.+.|++|+|+.||++++.+++++|+|||+||++
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 57889999999999999999999999999999999999974
No 41
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.30 E-value=0.00024 Score=79.79 Aligned_cols=129 Identities=15% Similarity=0.055 Sum_probs=98.6
Q ss_pred cccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCC--HHHHHHHHHHHHHhcCC-cchHHHHHHc
Q 006250 155 IAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGE--LEGQENAARAIGLLGRD-AESVEQIVNA 231 (654)
Q Consensus 155 V~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~--~~~q~~Aa~AL~nLa~~-~e~~~~iv~~ 231 (654)
+..|.+.+++....|..-..|++..+++++..+++.|++|.|..++...+ ++.+...+..+..+... ......+.+.
T Consensus 15 l~~L~~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~ 94 (678)
T KOG1293|consen 15 LYRLLHLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRI 94 (678)
T ss_pred HHhhhcCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHH
Confidence 56667788899999999999998777888888999999999999987655 66775555555555555 5678899999
Q ss_pred CchHHHHHhhcCCC-hhHHHHHHHHHHHHhcCChhhHHH---HHhCCcHHHHHHhhc
Q 006250 232 GVCSTFAKNLKDGH-MKVQSVVAWAVSELASNHPKCQDH---FAQNNIVRFLVSHLA 284 (654)
Q Consensus 232 GaIp~Lv~LL~s~~-~~vq~~Aa~aL~nLa~~~~~~r~~---i~~~g~I~~LV~LL~ 284 (654)
+.+|.|.++|.+.+ ..+++.....+.++-.-++ +++. .....+++.+-.++.
T Consensus 95 ~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~-~q~~~~s~~~~sIi~~~s~l~s 150 (678)
T KOG1293|consen 95 IELLKLLQLLSESDSLNVLEKTLRCLRTIFETSK-YQDKKMSLHLKSIIVKFSLLYS 150 (678)
T ss_pred hhHHHHHHHhcCcchHhHHHHHHHHHHHHHhccc-ccccchhhhHHHHHHHHHHHHh
Confidence 99999999999988 8899999999999976332 2222 222345555555554
No 42
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=5.8e-06 Score=87.25 Aligned_cols=140 Identities=19% Similarity=0.200 Sum_probs=120.3
Q ss_pred ccCCCCccccchhhhhHHHHcccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCC-HHHHHHHHH
Q 006250 135 YLGLPPIAANEPILCLIWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGE-LEGQENAAR 213 (654)
Q Consensus 135 ~~~lp~la~~~~i~~~v~~lV~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~-~~~q~~Aa~ 213 (654)
.+|++++ +..|++++...|..|++.|+.++.+||+.+..+++.|+.+.|+..|.+.+ ...+..|..
T Consensus 123 ~ggl~~l-------------l~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~ 189 (342)
T KOG2160|consen 123 LGGLVPL-------------LGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALF 189 (342)
T ss_pred ccCHHHH-------------HHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHH
Confidence 5677776 77999999999999999999999999999999999999999999998765 567799999
Q ss_pred HHHHhcCC-cchHHHHHHcCchHHHHHhhcC--CChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCc
Q 006250 214 AIGLLGRD-AESVEQIVNAGVCSTFAKNLKD--GHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFET 287 (654)
Q Consensus 214 AL~nLa~~-~e~~~~iv~~GaIp~Lv~LL~s--~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~ 287 (654)
|++.|-++ +.....+...+|...|..+|.+ .+..+|..++..+.+|...+...++.+...|.-..++.+..+..
T Consensus 190 AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~ 266 (342)
T KOG2160|consen 190 AISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLD 266 (342)
T ss_pred HHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccc
Confidence 99999987 5677888888999999999998 45788899999999999877777776666777777777776553
No 43
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.24 E-value=0.00044 Score=76.27 Aligned_cols=134 Identities=12% Similarity=0.023 Sum_probs=94.0
Q ss_pred HHHHccccc-CCCHHHHHHHHHHHHHhccCCchhHHHHHhc-----CCHHHHHHhhccCCHHHHHHHHHHHHHhcCC-cc
Q 006250 151 IWEQIAILH-TGSMEEKCDAAASLVSLARDNDRYGKLIIEE-----GGVPPLLKLAYEGELEGQENAARAIGLLGRD-AE 223 (654)
Q Consensus 151 v~~lV~lL~-s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~-----G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~-~e 223 (654)
+.-++.+|+ ...++........+..+..+++.....+.+. ....|++.+|..++.-++..|...|..|... +.
T Consensus 55 ~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~ 134 (429)
T cd00256 55 VKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLA 134 (429)
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCcc
Confidence 333466666 4456666667777777776655545555553 5678999999988888999999999988754 22
Q ss_pred hHHHHHHcCchHHHHHhhcCC-ChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhcc
Q 006250 224 SVEQIVNAGVCSTFAKNLKDG-HMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAF 285 (654)
Q Consensus 224 ~~~~iv~~GaIp~Lv~LL~s~-~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~ 285 (654)
+.......--++-|...|+++ +...+..++.+|.+|.. .+++|..|.+.+++++|+.+|+.
T Consensus 135 ~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~-~~~~R~~f~~~~~v~~L~~~L~~ 196 (429)
T cd00256 135 KMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLR-VDEYRFAFVLADGVPTLVKLLSN 196 (429)
T ss_pred ccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhC-CchHHHHHHHccCHHHHHHHHhh
Confidence 211111111233455566654 46778888999999998 77999999999999999999974
No 44
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.22 E-value=0.00027 Score=77.92 Aligned_cols=133 Identities=14% Similarity=0.023 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHH
Q 006250 411 MKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVL 490 (654)
Q Consensus 411 lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv 490 (654)
+.+.|+++|+.+... .+++.|...+.+.+++|+..|++++..+. . ...+
T Consensus 163 Vra~A~raLG~l~~~-----------~a~~~L~~al~d~~~~VR~aA~~al~~lG--~------------------~~A~ 211 (410)
T TIGR02270 163 VRAAALRALGELPRR-----------LSESTLRLYLRDSDPEVRFAALEAGLLAG--S------------------RLAW 211 (410)
T ss_pred HHHHHHHHHHhhccc-----------cchHHHHHHHcCCCHHHHHHHHHHHHHcC--C------------------HhHH
Confidence 457888888887432 46777888899999999999999986652 1 1233
Q ss_pred HHHHHHhhhcCcchhhHHHHHHHHhhhcchhhhhccHHHHHHHhccCCHHHHHHHHHHHHhccccCCCCCHHHHHHHHHC
Q 006250 491 EQLLHIVEKADSDLLIPSIRAIGNLARTFRATETRIIGPLVNLLDEREPEVIMEATVALNKFATTENYLSETHSKAIINA 570 (654)
Q Consensus 491 ~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ 570 (654)
+.+..+....+..+......+++... ..+++..|..++++.. ++.++++||+++...
T Consensus 212 ~~l~~~~~~~g~~~~~~l~~~lal~~------~~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p--------------- 268 (410)
T TIGR02270 212 GVCRRFQVLEGGPHRQRLLVLLAVAG------GPDAQAWLRELLQAAA--TRREALRAVGLVGDV--------------- 268 (410)
T ss_pred HHHHHHHhccCccHHHHHHHHHHhCC------chhHHHHHHHHhcChh--hHHHHHHHHHHcCCc---------------
Confidence 45555444444333322233333221 1257888888887754 888999999987422
Q ss_pred CCHHHHHHhhccCCcchHHHHHHHHHHHH
Q 006250 571 GGVKHLIQLVYFGEQMIQIPALTLLCYIA 599 (654)
Q Consensus 571 ggi~~Lv~LL~~~~~~~q~~Al~~L~~ia 599 (654)
..+++|++++. ++.+-..|..+++.|.
T Consensus 269 ~av~~L~~~l~--d~~~aR~A~eA~~~It 295 (410)
T TIGR02270 269 EAAPWCLEAMR--EPPWARLAGEAFSLIT 295 (410)
T ss_pred chHHHHHHHhc--CcHHHHHHHHHHHHhh
Confidence 35688888775 2224445778888774
No 45
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=0.0029 Score=75.38 Aligned_cols=369 Identities=12% Similarity=0.100 Sum_probs=207.5
Q ss_pred HHHHcccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhc-CCHHHHHHhh----ccCCHHHHHHHHHHHHHhcCC-cch
Q 006250 151 IWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEE-GGVPPLLKLA----YEGELEGQENAARAIGLLGRD-AES 224 (654)
Q Consensus 151 v~~lV~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~-G~Ip~LV~LL----~s~~~~~q~~Aa~AL~nLa~~-~e~ 224 (654)
..-+.+.+..++..+|..|++++...+..++.++..+-.- ..+|.++..| ..++.+.-..+..+|-.|+.. +..
T Consensus 161 ~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~ 240 (1075)
T KOG2171|consen 161 LRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKL 240 (1075)
T ss_pred HHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHH
Confidence 3334677787776799999999999987655444444332 3466566554 556666666677777777754 222
Q ss_pred -HHHHHHcCchHHHHHhhcCC--ChhHHHHHHHHHHHHhcCChhhHHHHHh--CCcHHHHHHhhccCchhhhhHHHHHhh
Q 006250 225 -VEQIVNAGVCSTFAKNLKDG--HMKVQSVVAWAVSELASNHPKCQDHFAQ--NNIVRFLVSHLAFETVQEHSKYAIASK 299 (654)
Q Consensus 225 -~~~iv~~GaIp~Lv~LL~s~--~~~vq~~Aa~aL~nLa~~~~~~r~~i~~--~g~I~~LV~LL~~~~~~~~~~~al~~~ 299 (654)
+..+. ..|..-.++.++. +..+|..|...|..++..-|.-.+.-.. .-.++.++.++..... +..|.
T Consensus 241 l~~~l~--~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~--D~ew~---- 312 (1075)
T KOG2171|consen 241 LRPHLS--QIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEED--DDEWS---- 312 (1075)
T ss_pred HHHHHH--HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCccc--chhhc----
Confidence 22221 1333344444443 4678888888888777643322221111 1133334443332211 11110
Q ss_pred ccchhhhHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccC
Q 006250 300 QNISSLHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQ 379 (654)
Q Consensus 300 ~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~ 379 (654)
+ .. ..++|+. .+|..+-.-.-..+|.++...
T Consensus 313 ------------~----~d--------~~ded~~---------~~~~~~A~~~lDrlA~~L~g~---------------- 343 (1075)
T KOG2171|consen 313 ------------N----ED--------DLDEDDE---------ETPYRAAEQALDRLALHLGGK---------------- 343 (1075)
T ss_pred ------------c----cc--------ccccccc---------cCcHHHHHHHHHHHHhcCChh----------------
Confidence 0 00 0000000 011222222222334443221
Q ss_pred CCCCCccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHH
Q 006250 380 PNHHNQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAM 459 (654)
Q Consensus 380 ~~~~~~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~ 459 (654)
...|.+..++... ..+++ -+.+..|..||+.++.|+.+.-+...+ ..++.....|+++.+.||+-||.
T Consensus 344 -~v~p~~~~~l~~~--------l~S~~--w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~DphprVr~AA~n 411 (1075)
T KOG2171|consen 344 -QVLPPLFEALEAM--------LQSTE--WKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDPHPRVRYAALN 411 (1075)
T ss_pred -hehHHHHHHHHHH--------hcCCC--HHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCCCHHHHHHHHH
Confidence 1112222222221 11222 246778999999999999877766444 67778889999999999999999
Q ss_pred HHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcC-cchhhHHHHHHHHhhhcchhh-hhccHHHHHH-----
Q 006250 460 ALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKAD-SDLLIPSIRAIGNLARTFRAT-ETRIIGPLVN----- 532 (654)
Q Consensus 460 AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~-~~l~~~~~~alg~la~~~~~~-e~~~I~pLV~----- 532 (654)
||..++. +=-|++++. ....+.+.|+..+.+.. +.++..++.|+=|....-... -....++|++
T Consensus 412 aigQ~st--dl~p~iqk~-------~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~ 482 (1075)
T KOG2171|consen 412 AIGQMST--DLQPEIQKK-------HHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLL 482 (1075)
T ss_pred HHHhhhh--hhcHHHHHH-------HHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 9999973 234666652 22445567888887665 789999988887776432221 1123344444
Q ss_pred HhccCCHHHHHHHHHHHHhccc--cCCCCCHHHHHHHHHCCCHHHHHHhhccCCc----chHHHHHHHHHHHHhCCCc
Q 006250 533 LLDEREPEVIMEATVALNKFAT--TENYLSETHSKAIINAGGVKHLIQLVYFGEQ----MIQIPALTLLCYIAIKQPE 604 (654)
Q Consensus 533 lL~~~~~~v~~eAa~AL~~~a~--~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~----~~q~~Al~~L~~ia~~~~~ 604 (654)
|++++.+.|+..|+-||+..|. .+.+ ..+-.. -++.|...|...+. ..+-..+.++.-++.-+|.
T Consensus 483 L~~~~~~~v~e~vvtaIasvA~AA~~~F--~pY~d~-----~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGk 553 (1075)
T KOG2171|consen 483 LLQSSKPYVQEQAVTAIASVADAAQEKF--IPYFDR-----LMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGK 553 (1075)
T ss_pred HhcCCchhHHHHHHHHHHHHHHHHhhhh--HhHHHH-----HHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhh
Confidence 4488899999999999988762 2211 112222 35777777776652 1345567777777666663
No 46
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.08 E-value=3.8e-05 Score=81.89 Aligned_cols=129 Identities=17% Similarity=0.157 Sum_probs=101.9
Q ss_pred cccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhcc----CCHHHHHHHHHHHHHhcCCcchHHHHHH
Q 006250 155 IAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYE----GELEGQENAARAIGLLGRDAESVEQIVN 230 (654)
Q Consensus 155 V~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s----~~~~~q~~Aa~AL~nLa~~~e~~~~iv~ 230 (654)
+++|.++|...+..|+..|..+....+...... ..+.++.++++|++ .+.+.+..++.+|.+|...++.|..+.+
T Consensus 111 l~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~-~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~ 189 (312)
T PF03224_consen 111 LKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKL-VKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK 189 (312)
T ss_dssp HHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHH-HHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHcCCccccch-HHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh
Confidence 678889999999999999999976644333322 25678999998876 3356779999999999999999999999
Q ss_pred cCchHHHHHhh-----cC--CChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhcc
Q 006250 231 AGVCSTFAKNL-----KD--GHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAF 285 (654)
Q Consensus 231 ~GaIp~Lv~LL-----~s--~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~ 285 (654)
.|+++.|..+| .+ ....++.+++-+++-|+- +++..+.+.+.+.|+.|+.+++.
T Consensus 190 ~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~ 250 (312)
T PF03224_consen 190 SNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKD 250 (312)
T ss_dssp HHHHHHHHHHHH---------HHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHh
Confidence 99999999999 22 346788999999999999 78888999999999999999874
No 47
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.07 E-value=0.00031 Score=75.27 Aligned_cols=222 Identities=23% Similarity=0.292 Sum_probs=154.4
Q ss_pred HcccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcchHHHHHHcCc
Q 006250 154 QIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIVNAGV 233 (654)
Q Consensus 154 lV~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~~iv~~Ga 233 (654)
+++.|.+.+..+|..|+..++.+.. .-++|+|..+|.+.++.++..|+.+|+.+-. ..+
T Consensus 48 ~~~~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~----------~~a 106 (335)
T COG1413 48 LLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELGD----------PEA 106 (335)
T ss_pred HHHHHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC----------hhH
Confidence 3778888899999999999877753 2379999999999999999999998887754 237
Q ss_pred hHHHHHhhc-CCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHHHHhh
Q 006250 234 CSTFAKNLK-DGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVAS 312 (654)
Q Consensus 234 Ip~Lv~LL~-s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~~~~ 312 (654)
+|+|+++|. +++..++..++++|+.+-.. .++.+|+.++....... +...
T Consensus 107 ~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-----------~a~~~l~~~l~~~~~~~----a~~~-------------- 157 (335)
T COG1413 107 VPPLVELLENDENEGVRAAAARALGKLGDE-----------RALDPLLEALQDEDSGS----AAAA-------------- 157 (335)
T ss_pred HHHHHHHHHcCCcHhHHHHHHHHHHhcCch-----------hhhHHHHHHhccchhhh----hhhh--------------
Confidence 899999998 58889999999999988752 24888999887653111 0000
Q ss_pred cCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCccchhhhh
Q 006250 313 NSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVL 392 (654)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 392 (654)
T Consensus 158 -------------------------------------------------------------------------------- 157 (335)
T COG1413 158 -------------------------------------------------------------------------------- 157 (335)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccCh
Q 006250 393 GGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNS 472 (654)
Q Consensus 393 ~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~ 472 (654)
..++. ..++..++.+|+.+. . ..+.+.+..++++....|+..++.+|..+....
T Consensus 158 ---------~~~~~--~~~r~~a~~~l~~~~--~---------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---- 211 (335)
T COG1413 158 ---------LDAAL--LDVRAAAAEALGELG--D---------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---- 211 (335)
T ss_pred ---------ccchH--HHHHHHHHHHHHHcC--C---------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch----
Confidence 00000 124556677777652 2 246677777777777778888888777664221
Q ss_pred HhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhhhhccHHHHHHHhccCCHHHHHHHHHHHHh
Q 006250 473 DLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRATETRIIGPLVNLLDEREPEVIMEATVALNK 551 (654)
Q Consensus 473 ~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~ 551 (654)
...++.+...+...+..++..++.++|.+.. ...+.+++..+.+.+..+...+..++.+
T Consensus 212 --------------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~------~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 270 (335)
T COG1413 212 --------------VEAADLLVKALSDESLEVRKAALLALGEIGD------EEAVDALAKALEDEDVILALLAAAALGA 270 (335)
T ss_pred --------------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc------chhHHHHHHHHhccchHHHHHHHHHhcc
Confidence 1344566677777677777777777765542 2456777777777777777776666653
No 48
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=0.0023 Score=69.66 Aligned_cols=119 Identities=15% Similarity=0.063 Sum_probs=106.2
Q ss_pred HHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcchHHHHHHcCchHHHHHhhcCCCh
Q 006250 167 CDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIVNAGVCSTFAKNLKDGHM 246 (654)
Q Consensus 167 ~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~~iv~~GaIp~Lv~LL~s~~~ 246 (654)
.-|...|.|+|.+ -+.-..+.....|.-||+.|...+.++......-|-.|+...+|+..|.+.|.|..|++++...++
T Consensus 281 rva~ylLlNlAed-~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~ 359 (791)
T KOG1222|consen 281 RVAVYLLLNLAED-ISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHP 359 (791)
T ss_pred HHHHHHHHHHhhh-hhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCH
Confidence 3466778899955 555666777889999999999988888888888999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCc
Q 006250 247 KVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFET 287 (654)
Q Consensus 247 ~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~ 287 (654)
+++......|.|++- +...|..++..|.+|.|+.+|.+++
T Consensus 360 dL~~~tl~LlfNlSF-D~glr~KMv~~GllP~l~~ll~~d~ 399 (791)
T KOG1222|consen 360 DLRKATLMLLFNLSF-DSGLRPKMVNGGLLPHLASLLDSDT 399 (791)
T ss_pred HHHHHHHHHhhhccc-cccccHHHhhccchHHHHHHhCCcc
Confidence 999999999999999 6689999999999999999998775
No 49
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.97 E-value=0.00072 Score=74.62 Aligned_cols=108 Identities=14% Similarity=0.020 Sum_probs=70.0
Q ss_pred CCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCC
Q 006250 402 SEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKP 481 (654)
Q Consensus 402 ~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~ 481 (654)
.+||+ ++..|+.++..+ |.. .++..+..+.......+....+.++..+ . .
T Consensus 189 d~~~~----VR~aA~~al~~l--G~~---------~A~~~l~~~~~~~g~~~~~~l~~~lal~----~-~---------- 238 (410)
T TIGR02270 189 DSDPE----VRFAALEAGLLA--GSR---------LAWGVCRRFQVLEGGPHRQRLLVLLAVA----G-G---------- 238 (410)
T ss_pred CCCHH----HHHHHHHHHHHc--CCH---------hHHHHHHHHHhccCccHHHHHHHHHHhC----C-c----------
Confidence 34554 457788888776 333 3555555544444444443333333211 1 0
Q ss_pred CchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhhhhccHHHHHHHhccCCHHHHHHHHHHHHhccc
Q 006250 482 TSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRATETRIIGPLVNLLDEREPEVIMEATVALNKFAT 554 (654)
Q Consensus 482 ~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a~ 554 (654)
..+++.|..++++. .++..++.++|.+.. .+.+++|+.++++.. +++.|.+++.+++.
T Consensus 239 -----~~a~~~L~~ll~d~--~vr~~a~~AlG~lg~------p~av~~L~~~l~d~~--~aR~A~eA~~~ItG 296 (410)
T TIGR02270 239 -----PDAQAWLRELLQAA--ATRREALRAVGLVGD------VEAAPWCLEAMREPP--WARLAGEAFSLITG 296 (410)
T ss_pred -----hhHHHHHHHHhcCh--hhHHHHHHHHHHcCC------cchHHHHHHHhcCcH--HHHHHHHHHHHhhC
Confidence 23567888888753 488899999998773 458999999997554 99999999999864
No 50
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.96 E-value=0.00058 Score=76.74 Aligned_cols=138 Identities=15% Similarity=0.103 Sum_probs=95.4
Q ss_pred cchhhhhHHHHcccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhc-CCHHHHHHhhccCCHHHHHHHHHHHHHhcCCc
Q 006250 144 NEPILCLIWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEE-GGVPPLLKLAYEGELEGQENAARAIGLLGRDA 222 (654)
Q Consensus 144 ~~~i~~~v~~lV~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~-G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~ 222 (654)
+.|+..++-.+++..++.++..|..|..++-..--. .....+..- --+..|..|-...+++++++-+.+|..|-...
T Consensus 169 ~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~--~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr 246 (885)
T KOG2023|consen 169 TRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIII--QTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVR 246 (885)
T ss_pred cCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeec--CcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhc
Confidence 567788888889999999999999999998776533 122222221 23445555656677999999999999887542
Q ss_pred chHHHHHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccC
Q 006250 223 ESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFE 286 (654)
Q Consensus 223 e~~~~iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~ 286 (654)
..+-.=--.+.|..+++.-++.+++|--.|+.....+|. .|-+++.+.. -++.|+.+|-++
T Consensus 247 ~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~ae-qpi~~~~L~p--~l~kliPvLl~~ 307 (885)
T KOG2023|consen 247 PDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAE-QPICKEVLQP--YLDKLIPVLLSG 307 (885)
T ss_pred HHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhc-CcCcHHHHHH--HHHHHHHHHHcc
Confidence 222211224567777777788889999999999999998 6677777655 244444444333
No 51
>PTZ00429 beta-adaptin; Provisional
Probab=97.96 E-value=0.0042 Score=73.37 Aligned_cols=292 Identities=13% Similarity=0.098 Sum_probs=181.8
Q ss_pred HcccccCCCHHHHHHHHHHHHH-hccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcchHHHHHHcC
Q 006250 154 QIAILHTGSMEEKCDAAASLVS-LARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIVNAG 232 (654)
Q Consensus 154 lV~lL~s~~~~~k~~Aa~aL~~-La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~~iv~~G 232 (654)
+-..|++.+...|..|...+-. ++.. .+. .-..+-.++++.+.+.+.|+-.--.|.+.+....... + -
T Consensus 37 Lr~~L~s~~~~~kk~alKkvIa~mt~G-~Dv------S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pela-l---L 105 (746)
T PTZ00429 37 LQNDLNGTDSYRKKAAVKRIIANMTMG-RDV------SYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKA-L---L 105 (746)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHCC-CCc------hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHH-H---H
Confidence 3566777777777777765444 4433 222 2245666778888888888877777777765322211 1 1
Q ss_pred chHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHHHHhh
Q 006250 233 VCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVAS 312 (654)
Q Consensus 233 aIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~~~~ 312 (654)
+|..|.+=|.++++.+|..|..+|++|-. ++ .++.++.-++..
T Consensus 106 aINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~---------i~e~l~~~lkk~-------------------------- 148 (746)
T PTZ00429 106 AVNTFLQDTTNSSPVVRALAVRTMMCIRV--SS---------VLEYTLEPLRRA-------------------------- 148 (746)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HH---------HHHHHHHHHHHH--------------------------
Confidence 57778888888888898888888887664 22 222232222100
Q ss_pred cCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCccchhhhh
Q 006250 313 NSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVL 392 (654)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 392 (654)
T Consensus 149 -------------------------------------------------------------------------------- 148 (746)
T PTZ00429 149 -------------------------------------------------------------------------------- 148 (746)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccCh
Q 006250 393 GGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNS 472 (654)
Q Consensus 393 ~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~ 472 (654)
..+.+| +++..|+-|+.++-..+++ .+.+.+-++.|..+|.+.+..|+.+|..+|.+|.. +++
T Consensus 149 -------L~D~~p----YVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~---~~~ 211 (746)
T PTZ00429 149 -------VADPDP----YVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVND---YGS 211 (746)
T ss_pred -------hcCCCH----HHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHH---hCc
Confidence 001233 3567888899988765553 34566788889999999999999999999999963 222
Q ss_pred HhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhhhhccHHHHHHHhccCCHHHHHHHHHHHHhc
Q 006250 473 DLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRATETRIIGPLVNLLDEREPEVIMEATVALNKF 552 (654)
Q Consensus 473 ~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~ 552 (654)
+- +. ..+..+..|+..|.+-++-.|......|.............++..+...|++.+.-|..+|+.++.++
T Consensus 212 ~~----l~----l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l 283 (746)
T PTZ00429 212 EK----IE----SSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANL 283 (746)
T ss_pred hh----hH----HHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 10 11 12445566777776666666666655553211111111125788888889999999999999999998
Q ss_pred cccCCCCCHHHHHHHHHCCCHHHHHHhhccCCcchHHHHHHHHHHHHhCCC
Q 006250 553 ATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIAIKQP 603 (654)
Q Consensus 553 a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~ia~~~~ 603 (654)
.... .++..+.+.. .-.++|+.|+. +++.+|--++..|..++...|
T Consensus 284 ~~~~---~~~~~~~~~~-rl~~pLv~L~s-s~~eiqyvaLr~I~~i~~~~P 329 (746)
T PTZ00429 284 ASRC---SQELIERCTV-RVNTALLTLSR-RDAETQYIVCKNIHALLVIFP 329 (746)
T ss_pred cCcC---CHHHHHHHHH-HHHHHHHHhhC-CCccHHHHHHHHHHHHHHHCH
Confidence 6321 1222222111 12267888854 555577777777766655444
No 52
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=0.0042 Score=71.07 Aligned_cols=119 Identities=19% Similarity=0.228 Sum_probs=92.3
Q ss_pred ccchhhhhHHHHcc-cccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCC
Q 006250 143 ANEPILCLIWEQIA-ILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRD 221 (654)
Q Consensus 143 ~~~~i~~~v~~lV~-lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~ 221 (654)
..|.|...||.+|+ -++++|-..|..|+.+++++-..-+..+..=+..+++|.++.++.+...-++..++|+|+.++.+
T Consensus 357 ~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~ 436 (859)
T KOG1241|consen 357 VGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADF 436 (859)
T ss_pred hcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhh
Confidence 46677778888888 89999999999999999999755344444445578999999999977778889999999999976
Q ss_pred -cch-HHHHHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhcC
Q 006250 222 -AES-VEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASN 262 (654)
Q Consensus 222 -~e~-~~~iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~ 262 (654)
++. -......+.++.|++-|++ .|.+-.+++|++.+|+..
T Consensus 437 l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea 478 (859)
T KOG1241|consen 437 LPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEA 478 (859)
T ss_pred chhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHH
Confidence 322 2233445667777776654 468889999999999974
No 53
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.94 E-value=3.9e-05 Score=65.27 Aligned_cols=86 Identities=23% Similarity=0.333 Sum_probs=70.1
Q ss_pred HHHHHHhh-ccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhh
Q 006250 439 LLCFAVLL-EKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLAR 517 (654)
Q Consensus 439 L~~L~~LL-~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~ 517 (654)
|+.|++.| ++++..+|..++++|.++. -..+++.|.++++++++.++..++++||.+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~--------------------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG--------------------DPEAIPALIELLKDEDPMVRRAAARALGRIG- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT--------------------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC--------------------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-
Confidence 57788888 8888999999999987431 0346789999999989999999999999885
Q ss_pred cchhhhhccHHHHHHHhccC-CHHHHHHHHHHHH
Q 006250 518 TFRATETRIIGPLVNLLDER-EPEVIMEATVALN 550 (654)
Q Consensus 518 ~~~~~e~~~I~pLV~lL~~~-~~~v~~eAa~AL~ 550 (654)
....++.|+++|.+. +..|+.+|+.||+
T Consensus 60 -----~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -----DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -----HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 245999999999665 5556888999985
No 54
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.81 E-value=4.1e-05 Score=55.49 Aligned_cols=40 Identities=28% Similarity=0.437 Sum_probs=37.0
Q ss_pred chhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcC
Q 006250 181 DRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGR 220 (654)
Q Consensus 181 ~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~ 220 (654)
++++..+++.|+||+|+.+|+++++++++.|+|+|+||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 4588999999999999999999999999999999999973
No 55
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.81 E-value=0.0073 Score=69.39 Aligned_cols=132 Identities=20% Similarity=0.201 Sum_probs=103.7
Q ss_pred hHHHHcccccCC-CHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccC--CHHHHHHHHHHHHHhcCCcc---
Q 006250 150 LIWEQIAILHTG-SMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEG--ELEGQENAARAIGLLGRDAE--- 223 (654)
Q Consensus 150 ~v~~lV~lL~s~-~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~--~~~~q~~Aa~AL~nLa~~~e--- 223 (654)
+|-.|+.++.+. =.+.|..|+..|..+++ .||..|+- -|++||++.|+.+ |++....+..++.++.++++
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga-~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~ 98 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGA-QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE 98 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHH-cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence 455567777644 67899999999999995 58888874 5799999999865 58899999999999987642
Q ss_pred ----hH----------H-HHHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhc-CChhhHHHHHh-CCcHHHHHHhhcc
Q 006250 224 ----SV----------E-QIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELAS-NHPKCQDHFAQ-NNIVRFLVSHLAF 285 (654)
Q Consensus 224 ----~~----------~-~iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~-~~~~~r~~i~~-~g~I~~LV~LL~~ 285 (654)
.+ + .|-..+-|..|+..+...+-.||..+...|.+|-. ..++.|+.+.. .-+|..|+.+|++
T Consensus 99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D 177 (970)
T KOG0946|consen 99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD 177 (970)
T ss_pred hcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence 22 2 23456789999999999999999999999998754 35678887776 4678888888864
No 56
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=97.80 E-value=6.8e-05 Score=79.95 Aligned_cols=129 Identities=22% Similarity=0.230 Sum_probs=101.2
Q ss_pred ccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhh-----ccC--CHHHHHHHHHHHHHhcCCcchHHHH
Q 006250 156 AILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLA-----YEG--ELEGQENAARAIGLLGRDAESVEQI 228 (654)
Q Consensus 156 ~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL-----~s~--~~~~q~~Aa~AL~nLa~~~e~~~~i 228 (654)
..+++.+.+.+.-|+.+|.++.+. +.+|..+.+.|++++|+.+| .++ +..+|.++.-++|.|+.+++....+
T Consensus 157 ~~l~~~~~~~~~~av~~L~~LL~~-~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~ 235 (312)
T PF03224_consen 157 SQLSSSDSELQYIAVQCLQNLLRS-KEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEEL 235 (312)
T ss_dssp -TT-HHHH---HHHHHHHHHHHTS-HHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HhhcCCCcchHHHHHHHHHHHhCc-chhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHH
Confidence 344455667778899999999976 89999999999999999999 222 2678899999999999999999999
Q ss_pred HHcCchHHHHHhhcC-CChhHHHHHHHHHHHHhcCChh-hHHHHHhCCcHHHHHHhhccC
Q 006250 229 VNAGVCSTFAKNLKD-GHMKVQSVVAWAVSELASNHPK-CQDHFAQNNIVRFLVSHLAFE 286 (654)
Q Consensus 229 v~~GaIp~Lv~LL~s-~~~~vq~~Aa~aL~nLa~~~~~-~r~~i~~~g~I~~LV~LL~~~ 286 (654)
.+.+.||.|+++++. ..+++-..+.++|.||....++ +...++..|+ ++++..|...
T Consensus 236 ~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~-l~~l~~L~~r 294 (312)
T PF03224_consen 236 NKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGL-LKTLQNLSER 294 (312)
T ss_dssp HTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-H-HHHHHHHHSS
T ss_pred hccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccH-HHHHHHHhcC
Confidence 999999999999975 5688999999999999985443 6777777655 5566666544
No 57
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.0024 Score=73.64 Aligned_cols=254 Identities=14% Similarity=0.134 Sum_probs=172.0
Q ss_pred HHHHHHhhccC-CHHHHHHHHHHHHH-hcCC-cchHHHHHHcCchHHHHHhhcCC-ChhHHHHHHHHHHHHhcCChhhHH
Q 006250 193 VPPLLKLAYEG-ELEGQENAARAIGL-LGRD-AESVEQIVNAGVCSTFAKNLKDG-HMKVQSVVAWAVSELASNHPKCQD 268 (654)
Q Consensus 193 Ip~LV~LL~s~-~~~~q~~Aa~AL~n-La~~-~e~~~~iv~~GaIp~Lv~LL~s~-~~~vq~~Aa~aL~nLa~~~~~~r~ 268 (654)
+..|+.=|... ++..|.+|+.=|+. |+.+ ++.-..+--.-.||.||.||+.. ..++.-.|+.||.+|+..-|..-.
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 44455545544 77788888777774 4444 34434444456899999999875 589999999999999998888889
Q ss_pred HHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcch
Q 006250 269 HFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSI 348 (654)
Q Consensus 269 ~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i 348 (654)
.++++++||.|++-|..= .|
T Consensus 249 ~vV~~~aIPvl~~kL~~I--------------------------------------------------ey---------- 268 (1051)
T KOG0168|consen 249 IVVDEHAIPVLLEKLLTI--------------------------------------------------EY---------- 268 (1051)
T ss_pred eeecccchHHHHHhhhhh--------------------------------------------------hh----------
Confidence 999999999998866310 00
Q ss_pred hhHHhhhhhhcccCCCcccccCCcccccccCCCCCCccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChH
Q 006250 349 SNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLS 428 (654)
Q Consensus 349 ~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~ 428 (654)
..+-+.+..||-+|++.
T Consensus 269 ------------------------------------------------------------iDvAEQ~LqALE~iSR~--- 285 (1051)
T KOG0168|consen 269 ------------------------------------------------------------IDVAEQSLQALEKISRR--- 285 (1051)
T ss_pred ------------------------------------------------------------hHHHHHHHHHHHHHHhh---
Confidence 01345678888888874
Q ss_pred HHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHH
Q 006250 429 ICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPS 508 (654)
Q Consensus 429 ~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~ 508 (654)
.-+.|..+|+|...+..|+--...+|..|.....|++..-..+ .|+. |
T Consensus 286 H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd------~f~~-------v------------------- 333 (1051)
T KOG0168|consen 286 HPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSD------EFHF-------V------------------- 333 (1051)
T ss_pred ccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc------cchH-------H-------------------
Confidence 4577889999999999999888899999888888876321100 1111 1
Q ss_pred HHHHHHhhhcchhhhhccHHHHHHHhccCCHHHHHHHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhccCCcc--
Q 006250 509 IRAIGNLARTFRATETRIIGPLVNLLDEREPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQM-- 586 (654)
Q Consensus 509 ~~alg~la~~~~~~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~-- 586 (654)
...+|.|-.+|+..+..+...++..++.++++- .+.++--..+...|=|.-..+||...+..
T Consensus 334 ---------------~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f-~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls 397 (1051)
T KOG0168|consen 334 ---------------MEALPLLTPLLSYQDKKPIESVCICLTRIADGF-QHGPDKLDQLCSHDLITNIQQLLSVTPTILS 397 (1051)
T ss_pred ---------------HHHHHHHHHHHhhccchhHHHHHHHHHHHHHhc-ccChHHHHHHhchhHHHHHHHHHhcCccccc
Confidence 136777888888888888888888888877443 23456667788888888888888766432
Q ss_pred --hHHHHHHHHHHHHhCCCch-HHHHhhhhhHHH
Q 006250 587 --IQIPALTLLCYIAIKQPES-KTLAQEEVLIVL 617 (654)
Q Consensus 587 --~q~~Al~~L~~ia~~~~~~-~~l~~~~~l~~l 617 (654)
+-...+..|.-++-+.+.. ..+.+.++...|
T Consensus 398 ~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L 431 (1051)
T KOG0168|consen 398 NGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTL 431 (1051)
T ss_pred ccchhHHHHHHHHHccCChHHHHHHHHhhHHHHH
Confidence 2222334444454444442 334444444444
No 58
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.68 E-value=0.00014 Score=61.92 Aligned_cols=85 Identities=25% Similarity=0.435 Sum_probs=67.1
Q ss_pred HHHHHHHh-hhcCcchhhHHHHHHHHhhhcchhhhhccHHHHHHHhccCCHHHHHHHHHHHHhccccCCCCCHHHHHHHH
Q 006250 490 LEQLLHIV-EKADSDLLIPSIRAIGNLARTFRATETRIIGPLVNLLDEREPEVIMEATVALNKFATTENYLSETHSKAII 568 (654)
Q Consensus 490 v~~L~~ll-~~~~~~l~~~~~~alg~la~~~~~~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv 568 (654)
|+.|++.+ +++++.++..++++||.+. ....+|.|+++|++.++.|+.+|+++|+++..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~-------------- 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG------DPEAIPALIELLKDEDPMVRRAAARALGRIGD-------------- 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH--------------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------------
Confidence 46677878 7777899999999999554 23589999999999999999999999999841
Q ss_pred HCCCHHHHHHhhccCCc-chHHHHHHHH
Q 006250 569 NAGGVKHLIQLVYFGEQ-MIQIPALTLL 595 (654)
Q Consensus 569 ~~ggi~~Lv~LL~~~~~-~~q~~Al~~L 595 (654)
..+++.|++++..++. .++..|+.+|
T Consensus 61 -~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 61 -PEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp -HHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 2267899999887654 3466677766
No 59
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.64 E-value=0.018 Score=66.58 Aligned_cols=300 Identities=16% Similarity=0.157 Sum_probs=191.4
Q ss_pred hhhHHHHcccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCC-cchHH
Q 006250 148 LCLIWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRD-AESVE 226 (654)
Q Consensus 148 ~~~v~~lV~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~-~e~~~ 226 (654)
+.++..+.+-|++++.-+.--|..+|++++.. +... ...|-..++|++.++-+++.|+-|...+-+. |+..+
T Consensus 106 lLltNslknDL~s~nq~vVglAL~alg~i~s~--Emar-----dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e 178 (866)
T KOG1062|consen 106 LLLTNSLKNDLNSSNQYVVGLALCALGNICSP--EMAR-----DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVE 178 (866)
T ss_pred HHHHHHHHhhccCCCeeehHHHHHHhhccCCH--HHhH-----HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHH
Confidence 33455567788888888889999999999843 3322 2356667799999999999998888887754 44443
Q ss_pred HHHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhh
Q 006250 227 QIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLH 306 (654)
Q Consensus 227 ~iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~ 306 (654)
. .++...++|.+.+..|-..+...+..|+..+++.-..+.+ .++.||..|+.=+ ...|
T Consensus 179 ~-----f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~---~~~y------------ 236 (866)
T KOG1062|consen 179 H-----FVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLT---NSGY------------ 236 (866)
T ss_pred H-----hhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHh---cCCC------------
Confidence 3 4677889999988888888889999999888877777776 7888888886311 0000
Q ss_pred HHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCcc
Q 006250 307 SALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQH 386 (654)
Q Consensus 307 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (654)
+. .| +
T Consensus 237 --------sp--------------------ey-----------------------------------------d------ 241 (866)
T KOG1062|consen 237 --------SP--------------------EY-----------------------------------------D------ 241 (866)
T ss_pred --------CC--------------------cc-----------------------------------------C------
Confidence 00 00 0
Q ss_pred chhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCCh------hHHHHHHHH
Q 006250 387 QDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPE------DVKHFSAMA 460 (654)
Q Consensus 387 ~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~------~v~~~aa~A 460 (654)
. ....||- +|....|-|.=|..|+.+....+.+ .|.+..++.+. -+.+++..+
T Consensus 242 -----v-------~gi~dPF----LQi~iLrlLriLGq~d~daSd~M~D-----iLaqvatntdsskN~GnAILYE~V~T 300 (866)
T KOG1062|consen 242 -----V-------HGISDPF----LQIRILRLLRILGQNDADASDLMND-----ILAQVATNTDSSKNAGNAILYECVRT 300 (866)
T ss_pred -----c-------cCCCchH----HHHHHHHHHHHhcCCCccHHHHHHH-----HHHHHHhcccccccchhHHHHHHHHH
Confidence 0 0024553 5566777777777666554444433 34444444332 588888888
Q ss_pred HHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhhhhccHHHHHHHhccCCHH
Q 006250 461 LMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRATETRIIGPLVNLLDEREPE 540 (654)
Q Consensus 461 L~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~e~~~I~pLV~lL~~~~~~ 540 (654)
||.| ..++.||- ..++-|-+++...|-.+++-+..+|..+...-...-.+==..++++|++.+.-
T Consensus 301 I~~I----~~~~~Lrv-----------lainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~S 365 (866)
T KOG1062|consen 301 IMDI----RSNSGLRV-----------LAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVS 365 (866)
T ss_pred HHhc----cCCchHHH-----------HHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHH
Confidence 8877 33445553 45677888888888888888888877766543321112224567888888888
Q ss_pred HHHHHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhccCCcchHHHHHHHHHHH
Q 006250 541 VIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYI 598 (654)
Q Consensus 541 v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~i 598 (654)
++++|..-+..+... .|.+.|+ +-|+..|...|+.....-+.-+|.+
T Consensus 366 IkrralELs~~lvn~------~Nv~~mv-----~eLl~fL~~~d~~~k~~~as~I~~l 412 (866)
T KOG1062|consen 366 IKRRALELSYALVNE------SNVRVMV-----KELLEFLESSDEDFKADIASKIAEL 412 (866)
T ss_pred HHHHHHHHHHHHhcc------ccHHHHH-----HHHHHHHHhccHHHHHHHHHHHHHH
Confidence 888777666555422 2345553 3455555555544433333333333
No 60
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.63 E-value=9.8e-05 Score=53.45 Aligned_cols=40 Identities=33% Similarity=0.463 Sum_probs=36.9
Q ss_pred cchHHHHHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhc
Q 006250 222 AESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELAS 261 (654)
Q Consensus 222 ~e~~~~iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~ 261 (654)
++++..+++.|++|+|+++|++++.+++..++|+|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 4578899999999999999999999999999999999973
No 61
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.60 E-value=0.007 Score=69.52 Aligned_cols=139 Identities=20% Similarity=0.188 Sum_probs=114.5
Q ss_pred ccCCCCccccchhhhhHHHHcccccCC--CHHHHHHHHHHHHHhccCCc------hhH-----------HHHHhcCCHHH
Q 006250 135 YLGLPPIAANEPILCLIWEQIAILHTG--SMEEKCDAAASLVSLARDND------RYG-----------KLIIEEGGVPP 195 (654)
Q Consensus 135 ~~~lp~la~~~~i~~~v~~lV~lL~s~--~~~~k~~Aa~aL~~La~~~~------~~~-----------~~I~e~G~Ip~ 195 (654)
.-|++|+ |+.|+.+ |++.-..+..++.++..+++ ..+ ..|-..+-|..
T Consensus 60 a~Gmk~l-------------i~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~l 126 (970)
T KOG0946|consen 60 AQGMKPL-------------IQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITL 126 (970)
T ss_pred HcccHHH-------------HHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHH
Confidence 4488888 8888854 78888888999999865532 111 22334688999
Q ss_pred HHHhhccCCHHHHHHHHHHHHHhcCC--cchHHHHHH-cCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHh
Q 006250 196 LLKLAYEGELEGQENAARAIGLLGRD--AESVEQIVN-AGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQ 272 (654)
Q Consensus 196 LV~LL~s~~~~~q~~Aa~AL~nLa~~--~e~~~~iv~-~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~ 272 (654)
|+..++..|-.++..|..-|.+|-+. ++-+..+.. --||..|+.+|.+..+.+|-.+.-.|..|..+++..+..++=
T Consensus 127 ll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAF 206 (970)
T KOG0946|consen 127 LLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAF 206 (970)
T ss_pred HHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHH
Confidence 99999999999999999999988765 466666655 569999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHhhccC
Q 006250 273 NNIVRFLVSHLAFE 286 (654)
Q Consensus 273 ~g~I~~LV~LL~~~ 286 (654)
++++..|..++..+
T Consensus 207 ENaFerLfsIIeeE 220 (970)
T KOG0946|consen 207 ENAFERLFSIIEEE 220 (970)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999754
No 62
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.55 E-value=0.034 Score=64.26 Aligned_cols=310 Identities=17% Similarity=0.133 Sum_probs=186.3
Q ss_pred ChhhHHHHHHhcCCCCCc----cc---cccCCCCccccchhhhhHHHHcccccCCCHHHHHHHHHHHHHhccCCchhHHH
Q 006250 114 SLGDVSWLIRVSASSEEN----DD---EYLGLPPIAANEPILCLIWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKL 186 (654)
Q Consensus 114 ~~~dv~~lL~~s~~~~~~----~~---~~~~lp~la~~~~i~~~v~~lV~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~ 186 (654)
..+|+--|++++--.+-+ .. ...++..+.+.+=++.+..+..++|++.++-+|..|+-|...+-+-.|+....
T Consensus 100 E~qdvllLltNslknDL~s~nq~vVglAL~alg~i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~ 179 (866)
T KOG1062|consen 100 ERQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEH 179 (866)
T ss_pred cchHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHH
Confidence 455777777776433211 11 12234445555656666666688999999999999999988887654554433
Q ss_pred HHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCC-cchHHHHHHcCchHHHHHhhc---------------CCChhHHH
Q 006250 187 IIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRD-AESVEQIVNAGVCSTFAKNLK---------------DGHMKVQS 250 (654)
Q Consensus 187 I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~-~e~~~~iv~~GaIp~Lv~LL~---------------s~~~~vq~ 250 (654)
.+++.-++|.+.+..+...+..-+..|+.. ++.-....+ -+|-||..|+ -++|-+|.
T Consensus 180 -----f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi 252 (866)
T KOG1062|consen 180 -----FVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQI 252 (866)
T ss_pred -----hhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHH
Confidence 467778888887777766677777777753 444333333 6777777774 13567888
Q ss_pred HHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHHHHhhcCCCCCCCCCCCCCCCCC
Q 006250 251 VVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVASNSQNPKDHRTAPPQQQGN 330 (654)
Q Consensus 251 ~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 330 (654)
.....|.-|..++++.-+.+-+ .|-++.+......+.-+|+..- ++++
T Consensus 253 ~iLrlLriLGq~d~daSd~M~D-----iLaqvatntdsskN~GnAILYE----~V~T----------------------- 300 (866)
T KOG1062|consen 253 RILRLLRILGQNDADASDLMND-----ILAQVATNTDSSKNAGNAILYE----CVRT----------------------- 300 (866)
T ss_pred HHHHHHHHhcCCCccHHHHHHH-----HHHHHHhcccccccchhHHHHH----HHHH-----------------------
Confidence 8888888888877776665532 2334443221111222222211 1111
Q ss_pred CCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCccchhhhhcCCCCCCCCCCChhHHHH
Q 006250 331 GNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVLGGTSTKGRESEDPTVKAQ 410 (654)
Q Consensus 331 ~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~dp~~~~~ 410 (654)
-|.+.. ++ .
T Consensus 301 ------------------------I~~I~~-------------------------------------------~~----~ 309 (866)
T KOG1062|consen 301 ------------------------IMDIRS-------------------------------------------NS----G 309 (866)
T ss_pred ------------------------HHhccC-------------------------------------------Cc----h
Confidence 111110 01 2
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHH------------------hhccCChhHHHHHHHHHHHHHhhcccCh
Q 006250 411 MKAMAARALWKLSKGNLSICRNLTESRALLCFAV------------------LLEKGPEDVKHFSAMALMEITAVAEKNS 472 (654)
Q Consensus 411 lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~------------------LL~~~~~~v~~~aa~AL~~Iaa~ae~~~ 472 (654)
+..-|+..|+++-.+.+.|.+.+ +|-.|.+ .|++.|..+|+.|-.-+..|.. ++|
T Consensus 310 LrvlainiLgkFL~n~d~NirYv----aLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn--~~N- 382 (866)
T KOG1062|consen 310 LRVLAINILGKFLLNRDNNIRYV----ALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVN--ESN- 382 (866)
T ss_pred HHHHHHHHHHHHhcCCccceeee----ehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhc--ccc-
Confidence 44566666777666666555543 3333333 3456666666665555544431 112
Q ss_pred HhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhhhhccHHHHHHHhccCCHHHHHHHHHHHHhc
Q 006250 473 DLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRATETRIIGPLVNLLDEREPEVIMEATVALNKF 552 (654)
Q Consensus 473 ~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~ 552 (654)
.+..++.|+..+.+.+++++..++.-|-.++..|.-...=.|..+.+.|......|.-.+.-.|-.+
T Consensus 383 -------------v~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~L 449 (866)
T KOG1062|consen 383 -------------VRVMVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRL 449 (866)
T ss_pred -------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHH
Confidence 2457788999999989999999999999999887653333466667777666555666666655555
Q ss_pred c
Q 006250 553 A 553 (654)
Q Consensus 553 a 553 (654)
.
T Consensus 450 I 450 (866)
T KOG1062|consen 450 I 450 (866)
T ss_pred H
Confidence 3
No 63
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.54 E-value=0.0066 Score=65.09 Aligned_cols=187 Identities=30% Similarity=0.328 Sum_probs=132.6
Q ss_pred CCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcchHHHHHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHH
Q 006250 191 GGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHF 270 (654)
Q Consensus 191 G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~~iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i 270 (654)
-.++.+++++.+.+..++..|+++++.+.. .-++|.|..+|.+.+..++..|+.+|+.+-. +
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--~------ 104 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS----------EEAVPLLRELLSDEDPRVRDAAADALGELGD--P------ 104 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC--h------
Confidence 478889999999888999999998776653 2378999999999999999999998887764 2
Q ss_pred HhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhh
Q 006250 271 AQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISN 350 (654)
Q Consensus 271 ~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~ 350 (654)
..+++|+.+|.... ..
T Consensus 105 ---~a~~~li~~l~~d~----~~--------------------------------------------------------- 120 (335)
T COG1413 105 ---EAVPPLVELLENDE----NE--------------------------------------------------------- 120 (335)
T ss_pred ---hHHHHHHHHHHcCC----cH---------------------------------------------------------
Confidence 26788888886410 00
Q ss_pred HHhhhhhhcccCCCcccccCCcccccccCCCCCCccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHH
Q 006250 351 VVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSIC 430 (654)
Q Consensus 351 vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~ 430 (654)
.++..|+++|+.+-.
T Consensus 121 -----------------------------------------------------------~vR~~aa~aL~~~~~------ 135 (335)
T COG1413 121 -----------------------------------------------------------GVRAAAARALGKLGD------ 135 (335)
T ss_pred -----------------------------------------------------------hHHHHHHHHHHhcCc------
Confidence 122334444544311
Q ss_pred HHHHhhCcHHHHHHhhccCC------------hhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhh
Q 006250 431 RNLTESRALLCFAVLLEKGP------------EDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVE 498 (654)
Q Consensus 431 ~~i~e~gaL~~L~~LL~~~~------------~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~ 498 (654)
..++.++..++.+.. ..++..++.++.++-. +..++.+...+.
T Consensus 136 -----~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~--------------------~~~~~~l~~~l~ 190 (335)
T COG1413 136 -----ERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD--------------------PEAIPLLIELLE 190 (335)
T ss_pred -----hhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC--------------------hhhhHHHHHHHh
Confidence 123444444444433 1577777777766521 224567888888
Q ss_pred hcCcchhhHHHHHHHHhhhcchhhhhccHHHHHHHhccCCHHHHHHHHHHHHhcc
Q 006250 499 KADSDLLIPSIRAIGNLARTFRATETRIIGPLVNLLDEREPEVIMEATVALNKFA 553 (654)
Q Consensus 499 ~~~~~l~~~~~~alg~la~~~~~~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a 553 (654)
..+..++..++.+||.+.... ..+.+.++..+...+..++..++.+|+...
T Consensus 191 ~~~~~vr~~Aa~aL~~~~~~~----~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~ 241 (335)
T COG1413 191 DEDADVRRAAASALGQLGSEN----VEAADLLVKALSDESLEVRKAALLALGEIG 241 (335)
T ss_pred CchHHHHHHHHHHHHHhhcch----hhHHHHHHHHhcCCCHHHHHHHHHHhcccC
Confidence 888899999999999887422 135678888999999999999999999874
No 64
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.54 E-value=0.01 Score=64.18 Aligned_cols=131 Identities=16% Similarity=0.022 Sum_probs=98.5
Q ss_pred cccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCC-HHHHHHhhcc-CCHHHHHHHHHHHHHhcCCcchHHHHHHcC
Q 006250 155 IAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGG-VPPLLKLAYE-GELEGQENAARAIGLLGRDAESVEQIVNAG 232 (654)
Q Consensus 155 V~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~-Ip~LV~LL~s-~~~~~q~~Aa~AL~nLa~~~e~~~~iv~~G 232 (654)
+.+|..++.-....+++.+..++...... ..-.+-.. ...|-.++.+ .+++...-|+++|..+...++.|..++.+.
T Consensus 120 l~ll~r~d~~iv~~~~~Ils~la~~g~~~-~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~ad 198 (442)
T KOG2759|consen 120 LNLLNRQDTFIVEMSFRILSKLACFGNCK-MELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIAD 198 (442)
T ss_pred HHHHhcCChHHHHHHHHHHHHHHHhcccc-ccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecC
Confidence 78888888888888889998887542211 11101111 1223344555 446677778899999999999999999999
Q ss_pred chHHHHHhhcC--CChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCc
Q 006250 233 VCSTFAKNLKD--GHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFET 287 (654)
Q Consensus 233 aIp~Lv~LL~s--~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~ 287 (654)
++..++..|.+ ....+|-+...++.-|+- +|...+.+...+.|+.|+++++..+
T Consensus 199 g~~~l~~~l~s~~~~~QlQYqsifciWlLtF-n~~~ae~~~~~~li~~L~~Ivk~~~ 254 (442)
T KOG2759|consen 199 GVSLLIRILASTKCGFQLQYQSIFCIWLLTF-NPHAAEKLKRFDLIQDLSDIVKEST 254 (442)
T ss_pred cchhhHHHHhccCcchhHHHHHHHHHHHhhc-CHHHHHHHhhccHHHHHHHHHHHHH
Confidence 99999999943 356899999999999998 6666677788899999999998654
No 65
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.44 E-value=0.0026 Score=69.03 Aligned_cols=127 Identities=14% Similarity=0.127 Sum_probs=108.8
Q ss_pred CCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCC--cchHHHHHHcCchHHHH
Q 006250 161 GSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRD--AESVEQIVNAGVCSTFA 238 (654)
Q Consensus 161 ~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~--~e~~~~iv~~GaIp~Lv 238 (654)
..++.....+..|.++-+++++....+++.|++...+-..+..++.+...++-||+|++.+ .+.++.|++.-+-.-|.
T Consensus 234 e~~e~aR~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF 313 (832)
T KOG3678|consen 234 EPVELARSVAGILEHMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLF 313 (832)
T ss_pred CcHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhh
Confidence 4567777889999999999888999999999999999988998999999999999999965 57788899988888888
Q ss_pred HhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCC---cHHHHHHhhccCch
Q 006250 239 KNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNN---IVRFLVSHLAFETV 288 (654)
Q Consensus 239 ~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g---~I~~LV~LL~~~~~ 288 (654)
-|-.+.++-.+..|+-+++-|+. +.+.-..+.+.| .|+|||..+..+++
T Consensus 314 ~LA~skDel~R~~AClAV~vlat-~KE~E~~VrkS~TlaLVEPlva~~DP~~F 365 (832)
T KOG3678|consen 314 PLAFSKDELLRLHACLAVAVLAT-NKEVEREVRKSGTLALVEPLVASLDPGRF 365 (832)
T ss_pred hhhcchHHHHHHHHHHHHhhhhh-hhhhhHHHhhccchhhhhhhhhccCcchh
Confidence 87788888899999999999998 667767777765 57788888877765
No 66
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.34 E-value=0.00029 Score=54.85 Aligned_cols=55 Identities=24% Similarity=0.292 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHcCchHHHHHhhcCCChhHHHHHHHHHHHH
Q 006250 205 LEGQENAARAIGLLGRDAESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSEL 259 (654)
Q Consensus 205 ~~~q~~Aa~AL~nLa~~~e~~~~iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nL 259 (654)
+.++..|+++|++++........-.....+|.|+.+|+++++.|+..|+|+|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4688999999999987654444446677899999999999999999999999986
No 67
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.27 E-value=0.00048 Score=53.65 Aligned_cols=53 Identities=25% Similarity=0.276 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHH
Q 006250 411 MKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEI 464 (654)
Q Consensus 411 lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~I 464 (654)
++..|+++|++++.+..+..+. .....++.|..+|++.+++||.+|||||.+|
T Consensus 3 vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 3 VRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 5789999999999887776665 4457999999999999999999999999875
No 68
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.26 E-value=0.0017 Score=73.31 Aligned_cols=118 Identities=12% Similarity=0.125 Sum_probs=99.7
Q ss_pred cccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcchH--HHHHHcC
Q 006250 155 IAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESV--EQIVNAG 232 (654)
Q Consensus 155 V~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~--~~iv~~G 232 (654)
|++|..++..++.-+..+|.|+..+-..++...++.|||..|.+++.+.+...+..+.|+|+++..+.+.+ ......=
T Consensus 425 vqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki 504 (678)
T KOG1293|consen 425 VQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKI 504 (678)
T ss_pred HHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHh
Confidence 88999999999999999999998776778999999999999999999999999999999999999875443 3333333
Q ss_pred chHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHh
Q 006250 233 VCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQ 272 (654)
Q Consensus 233 aIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~ 272 (654)
.-..++.+.+++++.||+++-..|.|+..+..+.-+.+.+
T Consensus 505 ~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~ 544 (678)
T KOG1293|consen 505 PANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLE 544 (678)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHH
Confidence 4566788889999999999999999999876666665554
No 69
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.07 E-value=0.019 Score=62.03 Aligned_cols=258 Identities=14% Similarity=0.101 Sum_probs=164.2
Q ss_pred HHHcccccC-CCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccC--CHHHHHHHHHHHHHhcCCcchHHHH
Q 006250 152 WEQIAILHT-GSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEG--ELEGQENAARAIGLLGRDAESVEQI 228 (654)
Q Consensus 152 ~~lV~lL~s-~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~--~~~~q~~Aa~AL~nLa~~~e~~~~i 228 (654)
..+...|++ .+.+....|+++|-.+.+. +++|-.++.+.|+..|+..|.++ +..+|.....++|-|+.++...+.+
T Consensus 159 ~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~ 237 (442)
T KOG2759|consen 159 GFLKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKL 237 (442)
T ss_pred HHHHHHHhccCCCchHHHHHHHHHHHhcC-cchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHH
Confidence 334555665 5667778899999999988 78999999999999999999533 3678999999999999999888888
Q ss_pred HHcCchHHHHHhhcCC-ChhHHHHHHHHHHHHhcCCh------hhHHHHHhCCcHHHHHHhhccCc--hhhh---hHHHH
Q 006250 229 VNAGVCSTFAKNLKDG-HMKVQSVVAWAVSELASNHP------KCQDHFAQNNIVRFLVSHLAFET--VQEH---SKYAI 296 (654)
Q Consensus 229 v~~GaIp~Lv~LL~s~-~~~vq~~Aa~aL~nLa~~~~------~~r~~i~~~g~I~~LV~LL~~~~--~~~~---~~~al 296 (654)
...+-|+.|++++++. .++|-...+.++.|+....+ +....++. +.+++-+++|.... +++. -.+ +
T Consensus 238 ~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~-~~v~k~l~~L~~rkysDEDL~~di~~-L 315 (442)
T KOG2759|consen 238 KRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVL-CKVLKTLQSLEERKYSDEDLVDDIEF-L 315 (442)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHh-cCchHHHHHHHhcCCCcHHHHHHHHH-H
Confidence 8889999999999875 47788889999999987443 22333444 45577777776542 1111 111 1
Q ss_pred HhhccchhhhHHHHhh---c--CCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCC
Q 006250 297 ASKQNISSLHSALVAS---N--SQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQP 371 (654)
Q Consensus 297 ~~~~~~~~i~~l~~~~---~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~ 371 (654)
...+. .+++.+.-.+ + .++.-.+ -|.+- .+..| .- -+-+++.| +...+
T Consensus 316 ~e~L~-~svq~LsSFDeY~sEl~sG~L~W---SP~Hk-~e~FW------------------~e-Na~rlnen--nyell- 368 (442)
T KOG2759|consen 316 TEKLK-NSVQDLSSFDEYKSELRSGRLEW---SPVHK-SEKFW------------------RE-NADRLNEN--NYELL- 368 (442)
T ss_pred HHHHH-HHHHhhccHHHHHHHHHhCCcCC---Ccccc-ccchH------------------HH-hHHHHhhc--cHHHH-
Confidence 11111 1222221110 0 0000000 00000 11111 00 00011111 00000
Q ss_pred cccccccCCCCCCccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCCh
Q 006250 372 DSHMYAMQPNHHNQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPE 451 (654)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~ 451 (654)
..|++++-. ..||. ..+.|+.=|+...+..|+--..+...|+=..++.|+.+.++
T Consensus 369 ------------kiL~~lLe~---------s~Dp~----iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~ 423 (442)
T KOG2759|consen 369 ------------KILIKLLET---------SNDPI----ILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDP 423 (442)
T ss_pred ------------HHHHHHHhc---------CCCCc----eeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCc
Confidence 012222222 24553 45678999999999999988888889999999999999999
Q ss_pred hHHHHHHHHHHHH
Q 006250 452 DVKHFSAMALMEI 464 (654)
Q Consensus 452 ~v~~~aa~AL~~I 464 (654)
+||++|-.|+-.+
T Consensus 424 ~Vry~ALlavQ~l 436 (442)
T KOG2759|consen 424 EVRYHALLAVQKL 436 (442)
T ss_pred hHHHHHHHHHHHH
Confidence 9999999887554
No 70
>PF05536 Neurochondrin: Neurochondrin
Probab=96.95 E-value=0.0064 Score=69.69 Aligned_cols=133 Identities=15% Similarity=0.127 Sum_probs=108.7
Q ss_pred HcccccCCCHHHHHHHHHHHHHhccCCch---hHHHHHhcCCHHHHHHhhccCC-------HHHHHHHHHHHHHhcCCcc
Q 006250 154 QIAILHTGSMEEKCDAAASLVSLARDNDR---YGKLIIEEGGVPPLLKLAYEGE-------LEGQENAARAIGLLGRDAE 223 (654)
Q Consensus 154 lV~lL~s~~~~~k~~Aa~aL~~La~~~~~---~~~~I~e~G~Ip~LV~LL~s~~-------~~~q~~Aa~AL~nLa~~~e 223 (654)
-+.+|++.+++.|..+...+.++...++. .++.|.++=|.+-|-+||+++. ...+.-|...|..++..++
T Consensus 10 c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~~~ 89 (543)
T PF05536_consen 10 CLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRDPE 89 (543)
T ss_pred HHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCChh
Confidence 37889999988999999999999866553 3457889878899999999842 4567788888999999876
Q ss_pred hHHHHHHcCchHHHHHhhcCCCh-hHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCc
Q 006250 224 SVEQIVNAGVCSTFAKNLKDGHM-KVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFET 287 (654)
Q Consensus 224 ~~~~iv~~GaIp~Lv~LL~s~~~-~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~ 287 (654)
....=---+-||.|++++.+++. ++...+..+|..++. .++.++.+.+.|+|+.|++.+.++.
T Consensus 90 ~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias-~~~G~~aLl~~g~v~~L~ei~~~~~ 153 (543)
T PF05536_consen 90 LASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIAS-SPEGAKALLESGAVPALCEIIPNQS 153 (543)
T ss_pred hhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHc-CcHhHHHHHhcCCHHHHHHHHHhCc
Confidence 54322223579999999988776 899999999999997 8899999999999999999998754
No 71
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.80 E-value=0.063 Score=56.12 Aligned_cols=113 Identities=19% Similarity=0.198 Sum_probs=84.6
Q ss_pred HHHcccccCCCHHHHHHHHHHHHHhccCCchhHHHH-HhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcchHHHHHH
Q 006250 152 WEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLI-IEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIVN 230 (654)
Q Consensus 152 ~~lV~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I-~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~~iv~ 230 (654)
.++|.+|++.++.+|..|...+..+... ..+... .+.-.++.|.+|++..++ -+.|+.||.|++.+++-+..+..
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~ 81 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQ 81 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHH
Confidence 4568999999999999999999888754 122111 123467888899887665 67899999999999888888887
Q ss_pred cCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHH
Q 006250 231 AGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDH 269 (654)
Q Consensus 231 ~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~ 269 (654)
. -+..++..+..+....-...+..|+|++.++...+..
T Consensus 82 ~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~l 119 (353)
T KOG2973|consen 82 D-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAAL 119 (353)
T ss_pred H-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHH
Confidence 7 6666666666665566677899999999965444433
No 72
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=96.73 E-value=0.0027 Score=58.59 Aligned_cols=96 Identities=9% Similarity=0.081 Sum_probs=84.5
Q ss_pred CCHHHHHHhhcc-CCHHHHHHHHHHHHHhcCCcchHHHHHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHH
Q 006250 191 GGVPPLLKLAYE-GELEGQENAARAIGLLGRDAESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDH 269 (654)
Q Consensus 191 G~Ip~LV~LL~s-~~~~~q~~Aa~AL~nLa~~~e~~~~iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~ 269 (654)
|.+..||.-... .+.+.|+....-|.|.+.+|-|=..+.+..++..+|+.|...++.+.+.+.+.|+|+|. ++.+.+.
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~-d~~n~~~ 94 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL-DKTNAKF 94 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc-ChHHHHH
Confidence 345556665544 45889998888899999999999999999999999999999999999999999999999 7899999
Q ss_pred HHhCCcHHHHHHhhccCc
Q 006250 270 FAQNNIVRFLVSHLAFET 287 (654)
Q Consensus 270 i~~~g~I~~LV~LL~~~~ 287 (654)
|.+++++|..+..|+++.
T Consensus 95 I~ea~g~plii~~lssp~ 112 (173)
T KOG4646|consen 95 IREALGLPLIIFVLSSPP 112 (173)
T ss_pred HHHhcCCceEEeecCCCh
Confidence 999999999999998763
No 73
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.71 E-value=1.8 Score=50.12 Aligned_cols=137 Identities=15% Similarity=0.106 Sum_probs=101.0
Q ss_pred ccCCCCccccchhhhhHHHHcccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHH
Q 006250 135 YLGLPPIAANEPILCLIWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARA 214 (654)
Q Consensus 135 ~~~lp~la~~~~i~~~v~~lV~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~A 214 (654)
.+|+..+..-|-.+-+..+++.+|.+.-+-+|..|...|..+.-. |-+.+. -.+|.|++=|+.+|+.+|..|+..
T Consensus 130 L~GLS~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLk---YPeAlr--~~FprL~EkLeDpDp~V~SAAV~V 204 (877)
T KOG1059|consen 130 LSGLSCIVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLK---YPEALR--PCFPRLVEKLEDPDPSVVSAAVSV 204 (877)
T ss_pred ecccccccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHh---hhHhHh--hhHHHHHHhccCCCchHHHHHHHH
Confidence 445555555555556777789999999999999999999998633 334443 368999999999999999999999
Q ss_pred HHHhcCC-cchHHHHHHcCchHHHHHhhcCC-ChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccC
Q 006250 215 IGLLGRD-AESVEQIVNAGVCSTFAKNLKDG-HMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFE 286 (654)
Q Consensus 215 L~nLa~~-~e~~~~iv~~GaIp~Lv~LL~s~-~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~ 286 (654)
++.|++. |.|--. --|.|-++|.+. +-.+...-....++|+--.|.... ..++||..++.+.
T Consensus 205 ICELArKnPknyL~-----LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgK-----KLieplt~li~sT 268 (877)
T KOG1059|consen 205 ICELARKNPQNYLQ-----LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGK-----KLIEPITELMEST 268 (877)
T ss_pred HHHHHhhCCccccc-----ccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhh-----hhhhHHHHHHHhh
Confidence 9999964 655332 348888988654 345556667777888876665433 3688999999653
No 74
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.66 E-value=0.053 Score=64.26 Aligned_cols=135 Identities=18% Similarity=0.195 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccC-ChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHH
Q 006250 411 MKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKG-PEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAV 489 (654)
Q Consensus 411 lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~-~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~v 489 (654)
-+++||..|..++.|-.--|+.-.+.+-+-....+|.++ .+-++...|..|+-+= ++..+.|=+... -..
T Consensus 573 qrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW---~d~~~Arw~G~r------~~A 643 (1387)
T KOG1517|consen 573 QRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLW---EDYDEARWSGRR------DNA 643 (1387)
T ss_pred HHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHh---hhcchhhhcccc------ccH
Confidence 578999999999998888888888887777667778885 5788999999988774 333333322111 124
Q ss_pred HHHHHHHhhhcCcchhhHHHHHHHHhhhcc----hh-----------------hhhccHH----HHHHHhccCCHHHHHH
Q 006250 490 LEQLLHIVEKADSDLLIPSIRAIGNLARTF----RA-----------------TETRIIG----PLVNLLDEREPEVIME 544 (654)
Q Consensus 490 v~~L~~ll~~~~~~l~~~~~~alg~la~~~----~~-----------------~e~~~I~----pLV~lL~~~~~~v~~e 544 (654)
.+.|..++.+..++|+..++-|||.+-+.+ .. .|. .|+ +|+.+++.+.+-|+.|
T Consensus 644 hekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~-~i~~~~~~ll~~vsdgsplvr~e 722 (1387)
T KOG1517|consen 644 HEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIED-LIIKGLMSLLALVSDGSPLVRTE 722 (1387)
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHH-HHHhhHHHHHHHHhccchHHHHH
Confidence 577888898888999999999999988763 22 121 233 8888899999999999
Q ss_pred HHHHHHhcccc
Q 006250 545 ATVALNKFATT 555 (654)
Q Consensus 545 Aa~AL~~~a~~ 555 (654)
.+.+|+.|..+
T Consensus 723 v~v~ls~~~~g 733 (1387)
T KOG1517|consen 723 VVVALSHFVVG 733 (1387)
T ss_pred HHHHHHHHHHh
Confidence 99999999743
No 75
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.65 E-value=0.0071 Score=53.57 Aligned_cols=65 Identities=18% Similarity=0.232 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhcCC-cchHHHHHHcCchHHHHHhhc--CCChhHHHHHHHHHHHHhcCChhhHHHHHh
Q 006250 208 QENAARAIGLLGRD-AESVEQIVNAGVCSTFAKNLK--DGHMKVQSVVAWAVSELASNHPKCQDHFAQ 272 (654)
Q Consensus 208 q~~Aa~AL~nLa~~-~e~~~~iv~~GaIp~Lv~LL~--s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~ 272 (654)
+..-...|+||+.. +.++..+.+.|+||.++.... ..+|-+++.|.++|.||+.+++++++.|.+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 45567889999975 789999999999999999775 456889999999999999999999998876
No 76
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.61 E-value=0.74 Score=53.64 Aligned_cols=329 Identities=19% Similarity=0.206 Sum_probs=180.9
Q ss_pred HHHcccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHH-----HhhccCCHHHHHHHHHHHHHhcC-CcchH
Q 006250 152 WEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLL-----KLAYEGELEGQENAARAIGLLGR-DAESV 225 (654)
Q Consensus 152 ~~lV~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV-----~LL~s~~~~~q~~Aa~AL~nLa~-~~e~~ 225 (654)
..+=+-|+.+++..|..|.++|..+=.. .|-|++ ++.....+.+++.||.||-.|=+ +++.+
T Consensus 111 ntfQk~L~DpN~LiRasALRvlSsIRvp------------~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k 178 (968)
T KOG1060|consen 111 NTFQKALKDPNQLIRASALRVLSSIRVP------------MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQK 178 (968)
T ss_pred HHHHhhhcCCcHHHHHHHHHHHHhcchh------------hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhH
Confidence 3345678888999998888888776422 222322 23345568999999999999875 46666
Q ss_pred HHHHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhh
Q 006250 226 EQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSL 305 (654)
Q Consensus 226 ~~iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i 305 (654)
..++ ..+=.||.+.++.|.-.|+.|.-.+|- +.-+.|- +-.+.|..+|.. +.+.... .-|
T Consensus 179 ~qL~-----e~I~~LLaD~splVvgsAv~AF~evCP---erldLIH--knyrklC~ll~d--vdeWgQv--------vlI 238 (968)
T KOG1060|consen 179 DQLE-----EVIKKLLADRSPLVVGSAVMAFEEVCP---ERLDLIH--KNYRKLCRLLPD--VDEWGQV--------VLI 238 (968)
T ss_pred HHHH-----HHHHHHhcCCCCcchhHHHHHHHHhch---hHHHHhh--HHHHHHHhhccc--hhhhhHH--------HHH
Confidence 6554 345667888888888888888877764 4445443 345777777753 1122111 122
Q ss_pred hHHHHhhcCCCCCCCCCCCCCCCCCCC--------cccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccc
Q 006250 306 HSALVASNSQNPKDHRTAPPQQQGNGN--------ISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYA 377 (654)
Q Consensus 306 ~~l~~~~~~~~~~~~~~~~~~~~~~~~--------~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~ 377 (654)
+.+++.-.- .-+.++..-..+++.- ...+.+|...
T Consensus 239 ~mL~RYAR~--~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~----------------------------------- 281 (968)
T KOG1060|consen 239 NMLTRYARH--QLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVN----------------------------------- 281 (968)
T ss_pred HHHHHHHHh--cCCCccccccccccCcccccccccccccCCCccc-----------------------------------
Confidence 333322100 0000000000000000 0001111000
Q ss_pred cCCCCCCccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHH
Q 006250 378 MQPNHHNQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFS 457 (654)
Q Consensus 378 ~~~~~~~~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~a 457 (654)
-|-+..++-..-.+.- ...|. +.-.+|.+.|.+|--+ +- .+...+|++||++.. ++|+-.
T Consensus 282 -----d~D~~lLL~stkpLl~---S~n~s----VVmA~aql~y~lAP~~--~~-----~~i~kaLvrLLrs~~-~vqyvv 341 (968)
T KOG1060|consen 282 -----DPDLKLLLQSTKPLLQ---SRNPS----VVMAVAQLFYHLAPKN--QV-----TKIAKALVRLLRSNR-EVQYVV 341 (968)
T ss_pred -----CccHHHHHHhccHHHh---cCCcH----HHHHHHhHHHhhCCHH--HH-----HHHHHHHHHHHhcCC-cchhhh
Confidence 0011111111000000 11222 3457899999998633 22 234678889898754 566643
Q ss_pred HHHHHHHHhhcccChHhh----hhccCCCchH--H-----------------HHHHHHHHHHhhhcCcchhhHHHHHHHH
Q 006250 458 AMALMEITAVAEKNSDLR----RSAFKPTSTA--A-----------------KAVLEQLLHIVEKADSDLLIPSIRAIGN 514 (654)
Q Consensus 458 a~AL~~Iaa~ae~~~~lr----r~a~~~~s~~--~-----------------~~vv~~L~~ll~~~~~~l~~~~~~alg~ 514 (654)
|.||+-.+..++.+= ++.|...+-. + ..+..-+..-|.+.+.++-..+++|||-
T Consensus 342 ---L~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGr 418 (968)
T KOG1060|consen 342 ---LQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGR 418 (968)
T ss_pred ---HHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 344444444443322 1222222110 1 1123334455555565678899999999
Q ss_pred hhhcchhhhhccHHHHHHHhccCCHHHHHHHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhc
Q 006250 515 LARTFRATETRIIGPLVNLLDEREPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVY 581 (654)
Q Consensus 515 la~~~~~~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~ 581 (654)
||..........+.-||.+|++.+..|..||+..|-.+-..+. .+|-+. |..|.+|+.
T Consensus 419 CA~~~~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p---~~h~~i------i~~La~lld 476 (968)
T KOG1060|consen 419 CASRIGSVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDP---AEHLEI------LFQLARLLD 476 (968)
T ss_pred HHHhhCchhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhCh---HHHHHH------HHHHHHHhh
Confidence 9987666666688999999999999999999999998864432 345444 356777764
No 77
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.60 E-value=0.0075 Score=53.44 Aligned_cols=68 Identities=26% Similarity=0.213 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhc--cCCHHHHHHHHHHHHHhcCC-cchHHHHHHcC
Q 006250 165 EKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAY--EGELEGQENAARAIGLLGRD-AESVEQIVNAG 232 (654)
Q Consensus 165 ~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~--s~~~~~q~~Aa~AL~nLa~~-~e~~~~iv~~G 232 (654)
.|..-...|++++..++.+++.|.+.||||.+++.-. ..+|-+++.|.+||.||+.+ ++|+..|.+..
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L~ 72 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQLE 72 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhcc
Confidence 3566788999999999999999999999999999754 44599999999999999976 78888776543
No 78
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.60 E-value=0.028 Score=65.80 Aligned_cols=153 Identities=16% Similarity=0.156 Sum_probs=114.7
Q ss_pred HHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHH
Q 006250 416 ARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLH 495 (654)
Q Consensus 416 a~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ 495 (654)
=+.|..++.|++- +--++-.++...+.+.++|+-.=-=|..++ +.+|++. .-+|+.+++
T Consensus 41 K~iIa~M~~G~dm-------ssLf~dViK~~~trd~ElKrL~ylYl~~ya---k~~P~~~-----------lLavNti~k 99 (757)
T COG5096 41 KKIIAQMSLGEDM-------SSLFPDVIKNVATRDVELKRLLYLYLERYA---KLKPELA-----------LLAVNTIQK 99 (757)
T ss_pred HHHHHHHhcCCCh-------HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---ccCHHHH-----------HHHHHHHHh
Confidence 4567777778761 124555667777778888886655555554 4455443 346788889
Q ss_pred HhhhcCcchhhHHHHHHHHhhhcchhhhhccHHHHHHHhccCCHHHHHHHHHHHHhccccCCCCCHHHHHHHHHCCCHHH
Q 006250 496 IVEKADSDLLIPSIRAIGNLARTFRATETRIIGPLVNLLDEREPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKH 575 (654)
Q Consensus 496 ll~~~~~~l~~~~~~alg~la~~~~~~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~ 575 (654)
=+++.++.++..++++++.+--.-- -..+++|+.++|.+++++|++.|+.|+.++=.-+ -....+.|-+.+
T Consensus 100 Dl~d~N~~iR~~AlR~ls~l~~~el--~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld-------~~l~~~~g~~~~ 170 (757)
T COG5096 100 DLQDPNEEIRGFALRTLSLLRVKEL--LGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD-------KDLYHELGLIDI 170 (757)
T ss_pred hccCCCHHHHHHHHHHHHhcChHHH--HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC-------HhhhhcccHHHH
Confidence 8999999999999999987753111 1247899999999999999999999999984222 245678889999
Q ss_pred HHHhhccCCcchHHHHHHHHHHH
Q 006250 576 LIQLVYFGEQMIQIPALTLLCYI 598 (654)
Q Consensus 576 Lv~LL~~~~~~~q~~Al~~L~~i 598 (654)
+..|+...|+.+...|+.+|..+
T Consensus 171 l~~l~~D~dP~Vi~nAl~sl~~i 193 (757)
T COG5096 171 LKELVADSDPIVIANALASLAEI 193 (757)
T ss_pred HHHHhhCCCchHHHHHHHHHHHh
Confidence 99999999998888899988877
No 79
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.59 E-value=0.24 Score=56.55 Aligned_cols=100 Identities=15% Similarity=0.094 Sum_probs=72.5
Q ss_pred cccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhc--CCHHHHHHhhccCCHHHHHHHHHHHHHhcCC--cchHHHHHH
Q 006250 155 IAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEE--GGVPPLLKLAYEGELEGQENAARAIGLLGRD--AESVEQIVN 230 (654)
Q Consensus 155 V~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~--G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~--~e~~~~iv~ 230 (654)
-..|.+.+-.+|+.+.-+|+.+|. .+-+-++.. ..||.|+++|.+..+-++.-++|+|+.-+.. .+.+...
T Consensus 399 k~~L~~~~W~vrEagvLAlGAIAE---GcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~-- 473 (885)
T KOG2023|consen 399 KEHLSSEEWKVREAGVLALGAIAE---GCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEY-- 473 (885)
T ss_pred HHHcCcchhhhhhhhHHHHHHHHH---HHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhh--
Confidence 346667788899999999999984 344444443 3689999999999999999999999988754 2222222
Q ss_pred cCchHHHHHhh---cCCChhHHHHHHHHHHHHhc
Q 006250 231 AGVCSTFAKNL---KDGHMKVQSVVAWAVSELAS 261 (654)
Q Consensus 231 ~GaIp~Lv~LL---~s~~~~vq~~Aa~aL~nLa~ 261 (654)
-.|.|-.+| -++..+||+.|+.+.+-+-.
T Consensus 474 --f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE 505 (885)
T KOG2023|consen 474 --FKPVLEGLLRRLLDSNKKVQEAACSAFATLEE 505 (885)
T ss_pred --hHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 234444444 46778999999998887765
No 80
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=96.56 E-value=0.012 Score=64.42 Aligned_cols=200 Identities=21% Similarity=0.157 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHH
Q 006250 411 MKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVL 490 (654)
Q Consensus 411 lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv 490 (654)
.+..|.||++-+.-|.---+..+....+.......|.++.-++|.+++|+++||++.-..+.- .+.|-+++..-
T Consensus 407 v~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~P------s~~s~~eR~sg 480 (728)
T KOG4535|consen 407 VKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMP------TPDSFQERFSG 480 (728)
T ss_pred HHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCC------CchHHHHHHHH
Confidence 567888888888776666666666666666667778888889999999999999864322100 01123334333
Q ss_pred HHHHHHhhhc-----C-cchhhHHHHHHHHhhhcchh--------hhh-ccHHHHHHHhccCCHHHHHHHHHHHHhcccc
Q 006250 491 EQLLHIVEKA-----D-SDLLIPSIRAIGNLARTFRA--------TET-RIIGPLVNLLDEREPEVIMEATVALNKFATT 555 (654)
Q Consensus 491 ~~L~~ll~~~-----~-~~l~~~~~~alg~la~~~~~--------~e~-~~I~pLV~lL~~~~~~v~~eAa~AL~~~a~~ 555 (654)
..|.+++... + +.++..+.++|||+...... .+. .++..+...+-...+.|+-+|+.|++|+-++
T Consensus 481 ~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn 560 (728)
T KOG4535|consen 481 LLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKN 560 (728)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcC
Confidence 4455555432 2 67999999999999874332 222 2333344444567788999999999999766
Q ss_pred CCCCCHHHHHHHHHCCCHHHHHHhhccC-CcchHHHHHHHHHHHHhCCCchH--HHHhhhhhHHHHh
Q 006250 556 ENYLSETHSKAIINAGGVKHLIQLVYFG-EQMIQIPALTLLCYIAIKQPESK--TLAQEEVLIVLEW 619 (654)
Q Consensus 556 ~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~-~~~~q~~Al~~L~~ia~~~~~~~--~l~~~~~l~~l~~ 619 (654)
+.+.-.++-.+ --.-+.|++|+... +-++.+.|+.+|.--+...++.. .+.=...+..|.|
T Consensus 561 ~a~~lq~~~wA---~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~re~~~d~~~Lsw~~lv~aLi~ 624 (728)
T KOG4535|consen 561 PALPLQTAPWA---SQAFNALTSLVTSCKNFKVRIRAAAALSVPGKREQYGDQYALSWNALVTALQK 624 (728)
T ss_pred ccccccCCCch---HHHHHHHHHHHHHhccceEeehhhhhhcCCCCcccchhHHhHHHHHHHHHHHH
Confidence 54311111111 11346788888765 44677888888865443333322 2222344455554
No 81
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.55 E-value=0.095 Score=60.64 Aligned_cols=103 Identities=18% Similarity=0.156 Sum_probs=82.2
Q ss_pred HHcccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcchHHHHHHcC
Q 006250 153 EQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIVNAG 232 (654)
Q Consensus 153 ~lV~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~~iv~~G 232 (654)
.++.--.+.++..|..|.+.++.+-.+ ..... .+.||.++++++++.+++.|+-...++= ..+.+.+.+.|
T Consensus 90 t~~kD~~d~np~iR~lAlrtm~~l~v~--~i~ey-----~~~Pl~~~l~d~~~yvRktaa~~vakl~--~~~~~~~~~~g 160 (734)
T KOG1061|consen 90 TFLKDCEDPNPLIRALALRTMGCLRVD--KITEY-----LCDPLLKCLKDDDPYVRKTAAVCVAKLF--DIDPDLVEDSG 160 (734)
T ss_pred hhhccCCCCCHHHHHHHhhceeeEeeh--HHHHH-----HHHHHHHhccCCChhHHHHHHHHHHHhh--cCChhhccccc
Confidence 346666778899999888888887643 22333 4679999999999999998876665553 45677888999
Q ss_pred chHHHHHhhcCCChhHHHHHHHHHHHHhcCCh
Q 006250 233 VCSTFAKNLKDGHMKVQSVVAWAVSELASNHP 264 (654)
Q Consensus 233 aIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~ 264 (654)
-++.|-.++.+.++.|..+|..+|.+|...++
T Consensus 161 l~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 161 LVDALKDLLSDSNPMVVANALAALSEIHESHP 192 (734)
T ss_pred hhHHHHHHhcCCCchHHHHHHHHHHHHHHhCC
Confidence 99999999998899999999999999987554
No 82
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.73 Score=55.11 Aligned_cols=104 Identities=11% Similarity=0.013 Sum_probs=86.8
Q ss_pred cccc-CCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcchHHHHHHcCch
Q 006250 156 AILH-TGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIVNAGVC 234 (654)
Q Consensus 156 ~lL~-s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~~iv~~GaI 234 (654)
..|+ .+++.++.-|...+..+.. |.++...+++.|.+..|+.+|.+ -+..++.+...|+.|+++++....-.++|++
T Consensus 1778 ~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l 1855 (2235)
T KOG1789|consen 1778 TYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTLLTLLHS-QPSMRARVLDVLYALSSNGQIGKEALEHGGL 1855 (2235)
T ss_pred HHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHhcCcHHHHHHHhcCch
Confidence 3444 4567788888888877764 58899999999999999999976 4788899999999999999988888899998
Q ss_pred HHHHHhhc-CCChhHHHHHHHHHHHHhc
Q 006250 235 STFAKNLK-DGHMKVQSVVAWAVSELAS 261 (654)
Q Consensus 235 p~Lv~LL~-s~~~~vq~~Aa~aL~nLa~ 261 (654)
..+..++. +.++.++.+++..++.|..
T Consensus 1856 ~yil~~~c~~~~~QqRAqaAeLlaKl~A 1883 (2235)
T KOG1789|consen 1856 MYILSILCLTNSDQQRAQAAELLAKLQA 1883 (2235)
T ss_pred hhhhHHHhccCcHHHHHHHHHHHHHhhh
Confidence 88887764 5668899999999999987
No 83
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.88 Score=54.43 Aligned_cols=119 Identities=17% Similarity=0.134 Sum_probs=96.5
Q ss_pred HHHHHHHHHhccCCchhHHHHH----hcCCHHHHHHhhccC-CHHHHHHHHHHHHHhcCCcchHHHHHHcCchHHHHHhh
Q 006250 167 CDAAASLVSLARDNDRYGKLII----EEGGVPPLLKLAYEG-ELEGQENAARAIGLLGRDAESVEQIVNAGVCSTFAKNL 241 (654)
Q Consensus 167 ~~Aa~aL~~La~~~~~~~~~I~----e~G~Ip~LV~LL~s~-~~~~q~~Aa~AL~nLa~~~e~~~~iv~~GaIp~Lv~LL 241 (654)
.-+..+|.|+-+.|++...... --|-.+.+..+|++. ++.+|.-|...+..+..+.+....++..|.+..|+.+|
T Consensus 1743 ~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lL 1822 (2235)
T KOG1789|consen 1743 LMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTLL 1822 (2235)
T ss_pred HHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHH
Confidence 4578999999877775443332 237788888888754 58899999999998888999999999999999999999
Q ss_pred cCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCc
Q 006250 242 KDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFET 287 (654)
Q Consensus 242 ~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~ 287 (654)
.|- +..++.+..+|..|++ +++....-.+.|++.-+..++-..+
T Consensus 1823 HS~-PS~R~~vL~vLYAL~S-~~~i~keA~~hg~l~yil~~~c~~~ 1866 (2235)
T KOG1789|consen 1823 HSQ-PSMRARVLDVLYALSS-NGQIGKEALEHGGLMYILSILCLTN 1866 (2235)
T ss_pred hcC-hHHHHHHHHHHHHHhc-CcHHHHHHHhcCchhhhhHHHhccC
Confidence 874 5678889999999999 7788888888999888888775443
No 84
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=96.26 E-value=0.59 Score=48.12 Aligned_cols=102 Identities=20% Similarity=0.211 Sum_probs=75.9
Q ss_pred HHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHH
Q 006250 414 MAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQL 493 (654)
Q Consensus 414 ~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L 493 (654)
.|-.+|-|+ |+.+ ++..|+.=|..+..-.|.++|..+..+- | +..|+.|
T Consensus 175 ~amF~LRn~--g~Ee---------aI~al~~~l~~~SalfrhEvAfVfGQl~-----------------s---~~ai~~L 223 (289)
T KOG0567|consen 175 RAMFYLRNI--GTEE---------AINALIDGLADDSALFRHEVAFVFGQLQ-----------------S---PAAIPSL 223 (289)
T ss_pred hhhhHhhcc--CcHH---------HHHHHHHhcccchHHHHHHHHHHHhhcc-----------------c---hhhhHHH
Confidence 566667665 4443 4555555666777788899999987662 1 3456788
Q ss_pred HHHhhhcC--cchhhHHHHHHHHhhhcchhhhhccHHHHHHHhccCCHHHHHHHHHHHHhc
Q 006250 494 LHIVEKAD--SDLLIPSIRAIGNLARTFRATETRIIGPLVNLLDEREPEVIMEATVALNKF 552 (654)
Q Consensus 494 ~~ll~~~~--~~l~~~~~~alg~la~~~~~~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~ 552 (654)
.+.|.... +-++..|+.|||.+|. ...++.|.+.+.+.+.-|++++..||.-+
T Consensus 224 ~k~L~d~~E~pMVRhEaAeALGaIa~------e~~~~vL~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 224 IKVLLDETEHPMVRHEAAEALGAIAD------EDCVEVLKEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred HHHHHhhhcchHHHHHHHHHHHhhcC------HHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 88886544 7799999999999984 35788999999999888888888888654
No 85
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=95.99 E-value=1 Score=51.26 Aligned_cols=312 Identities=12% Similarity=0.077 Sum_probs=177.5
Q ss_pred CHHHHHHhhccCCHHHHHHHHHHHHHhcCCcchHHHHHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHH
Q 006250 192 GVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFA 271 (654)
Q Consensus 192 ~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~~iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~ 271 (654)
.|..|+.-+..+++.+|+....+|..+....+.... .-..+.+.+++.+.+..-+.-+++.++.+..+. ....+.
T Consensus 97 ~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~---~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~--~i~~~~ 171 (569)
T KOG1242|consen 97 IIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSG---EYVLELLLELLTSTKIAERAGAAYGLAGLVNGL--GIESLK 171 (569)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCH---HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCc--HHhhhh
Confidence 466777778888899999888888877644222111 124677888898888888888999999998743 345667
Q ss_pred hCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhH
Q 006250 272 QNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNV 351 (654)
Q Consensus 272 ~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~v 351 (654)
+.+.+..|-..+.+.....+..-+... ....+....+.-.+ -. ...+ +.+-...+|..+.-=+..
T Consensus 172 ~~~~l~~l~~ai~dk~~~~~re~~~~a------~~~~~~~Lg~~~EP---yi-v~~l-----p~il~~~~d~~~~Vr~Aa 236 (569)
T KOG1242|consen 172 EFGFLDNLSKAIIDKKSALNREAALLA------FEAAQGNLGPPFEP---YI-VPIL-----PSILTNFGDKINKVREAA 236 (569)
T ss_pred hhhHHHHHHHHhcccchhhcHHHHHHH------HHHHHHhcCCCCCc---hH-HhhH-----HHHHHHhhccchhhhHHH
Confidence 778888888888765321121100000 00011111110000 00 0000 000011122221111222
Q ss_pred HhhhhhhcccCCCcccccCCcccccccCCCCCCccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHH
Q 006250 352 VTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICR 431 (654)
Q Consensus 352 v~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~ 431 (654)
..++-++. ...+.++++.+...+-.+ ..+. +=+-|..++..|+.++. +...+-
T Consensus 237 ~~a~kai~----------------~~~~~~aVK~llpsll~~--------l~~~--kWrtK~aslellg~m~~-~ap~qL 289 (569)
T KOG1242|consen 237 VEAAKAIM----------------RCLSAYAVKLLLPSLLGS--------LLEA--KWRTKMASLELLGAMAD-CAPKQL 289 (569)
T ss_pred HHHHHHHH----------------HhcCcchhhHhhhhhHHH--------HHHH--hhhhHHHHHHHHHHHHH-hchHHH
Confidence 22211111 111233333333321110 0111 22456788888888887 444556
Q ss_pred HHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccChHhhh-------hccCCC--------------------ch
Q 006250 432 NLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRR-------SAFKPT--------------------ST 484 (654)
Q Consensus 432 ~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr-------~a~~~~--------------------s~ 484 (654)
.......+|++...|.+.+++||+.+-.+|-.++..-+ |+++.+ +.-.++ .|
T Consensus 290 s~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svid-N~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~p 368 (569)
T KOG1242|consen 290 SLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVID-NPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAP 368 (569)
T ss_pred HHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecch
Confidence 67777899999999999999999999999999987654 667665 111111 12
Q ss_pred HHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhhhhccHH-------HHHHHhccCCHHHHHHHHHHHHhc
Q 006250 485 AAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRATETRIIG-------PLVNLLDEREPEVIMEATVALNKF 552 (654)
Q Consensus 485 ~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~e~~~I~-------pLV~lL~~~~~~v~~eAa~AL~~~ 552 (654)
.---+++-|.+=+..-+...+...+..+||++.-..+.. .+.| -|=..+.+..++++..|+.||+..
T Consensus 369 sLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~-~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l 442 (569)
T KOG1242|consen 369 SLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPK-DLAPFLPSLLPGLKENLDDAVPEVRAVAARALGAL 442 (569)
T ss_pred hHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHH-HHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHH
Confidence 222244445555666667788889999999998653322 2333 333344667899999999999765
No 86
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.88 E-value=0.11 Score=59.01 Aligned_cols=113 Identities=16% Similarity=0.164 Sum_probs=78.5
Q ss_pred hhhhhHHH-HcccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcC---C
Q 006250 146 PILCLIWE-QIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGR---D 221 (654)
Q Consensus 146 ~i~~~v~~-lV~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~---~ 221 (654)
.....+|. ++.+...++..+|..|+..|..|... -..-+.+ ....+++++....+++..|...++-.+. .
T Consensus 194 ~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg-~kL~~~~-----Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~ 267 (823)
T KOG2259|consen 194 HDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEG-FKLSKAC-----YSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPA 267 (823)
T ss_pred ccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhccc-ccccHHH-----HHHHHHHhcchHHHHHHHHHHHHHHHHhcCCC
Confidence 34456666 78888888999999999998888743 2222322 4567888998889999888666554442 1
Q ss_pred c---ch-HHHHHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChh
Q 006250 222 A---ES-VEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPK 265 (654)
Q Consensus 222 ~---e~-~~~iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~ 265 (654)
+ ++ ...+. ..+...+-+.+++.+-.|+..|+.+|+.+-..+++
T Consensus 268 ~~e~e~~e~kl~-D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee 314 (823)
T KOG2259|consen 268 PLERESEEEKLK-DAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEE 314 (823)
T ss_pred cccchhhhhhhH-HHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHH
Confidence 1 22 22233 33677778888888889999999999998775544
No 87
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.76 E-value=5.7 Score=46.51 Aligned_cols=221 Identities=16% Similarity=0.094 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccCh--HhhhhccCCC-----
Q 006250 410 QMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNS--DLRRSAFKPT----- 482 (654)
Q Consensus 410 ~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~--~lrr~a~~~~----- 482 (654)
+++..|-.+|.+|..=.=+--+.-.+.-.+..-..-.++.+++|.-.+.-==++|++. |.+. +... ++.-.
T Consensus 232 ~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeE-EiD~~~e~~e-~~d~~~~p~~ 309 (859)
T KOG1241|consen 232 EIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEE-EIDLAIEYGE-AVDQGLPPSS 309 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HhhcCCCchh
Confidence 4667777777777642221111112222222334556788888888877665556532 2120 1111 11111
Q ss_pred ----chHHHHHHHHHHHHhhhcC----cchh---hHHHHHHHHhhhcchhhhhccHHHHHH----HhccCCHHHHHHHHH
Q 006250 483 ----STAAKAVLEQLLHIVEKAD----SDLL---IPSIRAIGNLARTFRATETRIIGPLVN----LLDEREPEVIMEATV 547 (654)
Q Consensus 483 ----s~~~~~vv~~L~~ll~~~~----~~l~---~~~~~alg~la~~~~~~e~~~I~pLV~----lL~~~~~~v~~eAa~ 547 (654)
..+.+.|++-|+.+|.+.+ ++.= ..+...|.-+|+.- +..++|+.+. -+++.+..-+..|+.
T Consensus 310 ~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~---~D~Iv~~Vl~Fiee~i~~pdwr~reaavm 386 (859)
T KOG1241|consen 310 KYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCV---GDDIVPHVLPFIEENIQNPDWRNREAAVM 386 (859)
T ss_pred hHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHh---cccchhhhHHHHHHhcCCcchhhhhHHHH
Confidence 1355679999999998733 2222 22223333333222 2345554433 567888888888999
Q ss_pred HHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhccCCcchHHHHHHHHHHHHhCCCch--HHHHhhhhhHHHHhhhhhhh
Q 006250 548 ALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIAIKQPES--KTLAQEEVLIVLEWSFKQAH 625 (654)
Q Consensus 548 AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~ia~~~~~~--~~l~~~~~l~~l~~~~~~~~ 625 (654)
|++-.-.+. .++.-+.|+ .+++|.++++++.+.--+.-.+.++|..++-+.++. .+..-..+++.|.. .
T Consensus 387 AFGSIl~gp---~~~~Lt~iV-~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~-----g 457 (859)
T KOG1241|consen 387 AFGSILEGP---EPDKLTPIV-IQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLE-----G 457 (859)
T ss_pred HHHhhhcCC---chhhhhHHH-hhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHH-----H
Confidence 988765333 455556655 578999999998333223334889999998777631 11112344454443 3
Q ss_pred hhcCccHHhHHHHHHHHHH
Q 006250 626 LVAEPSIEALLPEAKSTLA 644 (654)
Q Consensus 626 ~~q~~~~~~l~~~a~~~l~ 644 (654)
+.++|.+..=.+.|+.-|.
T Consensus 458 L~DePrva~N~CWAf~~La 476 (859)
T KOG1241|consen 458 LNDEPRVASNVCWAFISLA 476 (859)
T ss_pred hhhCchHHHHHHHHHHHHH
Confidence 3356666666666665554
No 88
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.76 E-value=0.51 Score=54.40 Aligned_cols=223 Identities=14% Similarity=0.179 Sum_probs=147.4
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHhcCC-cchHHHHHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHh
Q 006250 194 PPLLKLAYEGELEGQENAARAIGLLGRD-AESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQ 272 (654)
Q Consensus 194 p~LV~LL~s~~~~~q~~Aa~AL~nLa~~-~e~~~~iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~ 272 (654)
+-++.||.+..+-+++.|...|+.+... |+.-+ -.+|-|++=|.++++.|+..|+..++.||..+|.+--.
T Consensus 147 ~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~--- 218 (877)
T KOG1059|consen 147 DDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQ--- 218 (877)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccccc---
Confidence 4568899999999999999999998753 43221 36899999999999999999999999999987764222
Q ss_pred CCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHH
Q 006250 273 NNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVV 352 (654)
Q Consensus 273 ~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv 352 (654)
.-|.+-.+|...+ .-|- -|.-+-..
T Consensus 219 --LAP~ffkllttSs----NNWm--------LIKiiKLF----------------------------------------- 243 (877)
T KOG1059|consen 219 --LAPLFYKLLVTSS----NNWV--------LIKLLKLF----------------------------------------- 243 (877)
T ss_pred --ccHHHHHHHhccC----CCee--------hHHHHHHH-----------------------------------------
Confidence 2355666664321 1110 00000000
Q ss_pred hhhhhhcccCCCcccccCCcccccccCCCCCCccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHH
Q 006250 353 TNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRN 432 (654)
Q Consensus 353 ~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~ 432 (654)
++ +.+ .| |. |
T Consensus 244 ---------------~a--------Ltp---------------------lE-PR---------------L---------- 253 (877)
T KOG1059|consen 244 ---------------AA--------LTP---------------------LE-PR---------------L---------- 253 (877)
T ss_pred ---------------hh--------ccc---------------------cC-ch---------------h----------
Confidence 00 000 01 11 1
Q ss_pred HHhhCcHHHHHHhhccCC-hhHHHHHHHHHHH--HHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHH
Q 006250 433 LTESRALLCFAVLLEKGP-EDVKHFSAMALME--ITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSI 509 (654)
Q Consensus 433 i~e~gaL~~L~~LL~~~~-~~v~~~aa~AL~~--Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~ 509 (654)
-.+.+++|..|+++.. ..+.++|..++-. |+.|-.++ +..++..|..|-.++++.|+.+++-++
T Consensus 254 --gKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~-----------~asiqLCvqKLr~fiedsDqNLKYlgL 320 (877)
T KOG1059|consen 254 --GKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDH-----------SASIQLCVQKLRIFIEDSDQNLKYLGL 320 (877)
T ss_pred --hhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCc-----------HHHHHHHHHHHhhhhhcCCccHHHHHH
Confidence 1146777877887765 3777777777632 22222112 234466778888899999999999999
Q ss_pred HHHHHhhhcchhhhhccHHHHHHHhccCCHHHHHHHHHHHHhccccCCCCCHHHHHHHH
Q 006250 510 RAIGNLARTFRATETRIIGPLVNLLDEREPEVIMEATVALNKFATTENYLSETHSKAII 568 (654)
Q Consensus 510 ~alg~la~~~~~~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv 568 (654)
-|++-++.+.+..-..--..++++|++.+.-++.+|..-|-.+.+. +|.+.|+
T Consensus 321 lam~KI~ktHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVsk------kNl~eIV 373 (877)
T KOG1059|consen 321 LAMSKILKTHPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVSK------KNLMEIV 373 (877)
T ss_pred HHHHHHhhhCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhh------hhHHHHH
Confidence 9999999877653222334678999999999999999888877643 4456664
No 89
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=95.60 E-value=0.9 Score=52.61 Aligned_cols=181 Identities=15% Similarity=0.112 Sum_probs=115.0
Q ss_pred CcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhh
Q 006250 437 RALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLA 516 (654)
Q Consensus 437 gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la 516 (654)
+.||.|.-+|++....||.|+..-+.-|+....+-.-.|. =..+.--|+.+|.+...+++..++.++|+++
T Consensus 883 dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aRE---------WMRIcfeLlelLkahkK~iRRaa~nTfG~Ia 953 (1172)
T KOG0213|consen 883 DLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSARE---------WMRICFELLELLKAHKKEIRRAAVNTFGYIA 953 (1172)
T ss_pred hhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHH---------HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 6788888999999999999999999999865443211111 0124456888899989999999999999999
Q ss_pred hcchhhhhccHHHHHHHhc--cCCHHHHHHHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhccCCcchHHHHHHH
Q 006250 517 RTFRATETRIIGPLVNLLD--EREPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTL 594 (654)
Q Consensus 517 ~~~~~~e~~~I~pLV~lL~--~~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~ 594 (654)
+...-.+ ++..|++=|+ ++...|....++|+-.-.|+. ...+|.|++=.+.++..+|--.|.+
T Consensus 954 kaIGPqd--VLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~p-------------FtVLPalmneYrtPe~nVQnGVLka 1018 (1172)
T KOG0213|consen 954 KAIGPQD--VLATLLNNLKVQERQNRVCTTVAIAIVAETCGP-------------FTVLPALMNEYRTPEANVQNGVLKA 1018 (1172)
T ss_pred HhcCHHH--HHHHHHhcchHHHHHhchhhhhhhhhhhhhcCc-------------hhhhHHHHhhccCchhHHHHhHHHH
Confidence 7443322 3334444442 333445555555554444443 2357888888888888888888889
Q ss_pred HHHHHhCCCchHHHHhhhhhHHHHhhhhhhhhhcCccHHhHHHHHHHHHHh
Q 006250 595 LCYIAIKQPESKTLAQEEVLIVLEWSFKQAHLVAEPSIEALLPEAKSTLAT 645 (654)
Q Consensus 595 L~~ia~~~~~~~~l~~~~~l~~l~~~~~~~~~~q~~~~~~l~~~a~~~l~~ 645 (654)
||.+=.-.++...=.-..+.|.||-+.. -.|+....+..-+..+|.+
T Consensus 1019 lsf~FeyigemskdYiyav~PlleDAlm----DrD~vhRqta~~~I~Hl~L 1065 (1172)
T KOG0213|consen 1019 LSFMFEYIGEMSKDYIYAVTPLLEDALM----DRDLVHRQTAMNVIKHLAL 1065 (1172)
T ss_pred HHHHHHHHHHHhhhHHHHhhHHHHHhhc----cccHHHHHHHHHHHHHHhc
Confidence 9887443343322222456777764332 2233444555555555544
No 90
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=95.50 E-value=1.5 Score=49.64 Aligned_cols=119 Identities=12% Similarity=0.069 Sum_probs=82.6
Q ss_pred cchhhhhHHHHcc-cccCCCHHHHHHHHHHHHHhccC-CchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCC
Q 006250 144 NEPILCLIWEQIA-ILHTGSMEEKCDAAASLVSLARD-NDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRD 221 (654)
Q Consensus 144 ~~~i~~~v~~lV~-lL~s~~~~~k~~Aa~aL~~La~~-~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~ 221 (654)
.|.|..-||.+|. -+++++-..++.|+.+++++-.. +..+.-.++ ..++|.+..+..+...-++..++|+++.|+.+
T Consensus 360 gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V-~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~ 438 (858)
T COG5215 360 GDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIV-PQALPGIENEMSDSCLWVKSTTAWCFGAIADH 438 (858)
T ss_pred hhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhH-HhhhHHHHHhcccceeehhhHHHHHHHHHHHH
Confidence 4455555777765 67888988999999999998743 223333333 46888888888866678899999999999864
Q ss_pred cchHHHHHHcCchHHHHHhhcC---CChhHHHHHHHHHHHHhcCChh
Q 006250 222 AESVEQIVNAGVCSTFAKNLKD---GHMKVQSVVAWAVSELASNHPK 265 (654)
Q Consensus 222 ~e~~~~iv~~GaIp~Lv~LL~s---~~~~vq~~Aa~aL~nLa~~~~~ 265 (654)
-...|-..|-+++.+.-+.- ..+.+-.+..|+.-|++.+-++
T Consensus 439 --va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~ 483 (858)
T COG5215 439 --VAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAK 483 (858)
T ss_pred --HHHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhh
Confidence 22233345666666654432 3467778899999999875443
No 91
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=95.43 E-value=0.29 Score=49.35 Aligned_cols=183 Identities=18% Similarity=0.146 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHhhcCC--hHHHHHHHhh--CcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHH
Q 006250 411 MKAMAARALWKLSKGN--LSICRNLTES--RALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAA 486 (654)
Q Consensus 411 lk~~Aa~AL~~La~gn--~~~~~~i~e~--gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~ 486 (654)
-+..|..-|-.+.+|+ ......+.+. ..+..+...+.+....|-+.||..+..++..-.+. | .|-.
T Consensus 23 ~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~-------~---~~~~ 92 (228)
T PF12348_consen 23 ERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSH-------F---EPYA 92 (228)
T ss_dssp HHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGG-------G---HHHH
T ss_pred HHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHh-------H---HHHH
Confidence 4567888888888887 3344444432 56678888899889999999999999998554422 2 2345
Q ss_pred HHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhhhhcc-HHHHHHHhccCCHHHHHHHHHHHHhccccCC--CCCHHH
Q 006250 487 KAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRATETRI-IGPLVNLLDEREPEVIMEATVALNKFATTEN--YLSETH 563 (654)
Q Consensus 487 ~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~e~~~-I~pLV~lL~~~~~~v~~eAa~AL~~~a~~~n--~~~~~~ 563 (654)
..+++.|++.+.+....+...+..+|-.+.....- ..++ ++.+...+.++++.++.+++..|..+...-+ ....+.
T Consensus 93 ~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~-~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~ 171 (228)
T PF12348_consen 93 DILLPPLLKKLGDSKKFIREAANNALDAIIESCSY-SPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQK 171 (228)
T ss_dssp HHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H---HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCc-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcc
Confidence 67888899999887788889999999888875441 1235 6667777899999999999988877752211 000111
Q ss_pred HHHHHHCCCHHHHHHhhccCCcchHHHHHHHHHHHHhCCCchH
Q 006250 564 SKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIAIKQPESK 606 (654)
Q Consensus 564 ~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~ia~~~~~~~ 606 (654)
...+ ..-++.+..++..+++.+...|-.++..+..+.|++.
T Consensus 172 ~~~~--~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a 212 (228)
T PF12348_consen 172 SAFL--KQLVKALVKLLSDADPEVREAARECLWALYSHFPERA 212 (228)
T ss_dssp HHHH--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH
T ss_pred cchH--HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhh
Confidence 1111 1235677788888888787778888888876777654
No 92
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=95.24 E-value=0.97 Score=51.00 Aligned_cols=285 Identities=22% Similarity=0.176 Sum_probs=156.5
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHhcCCcchHHHHHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHh
Q 006250 193 VPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQ 272 (654)
Q Consensus 193 Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~~iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~ 272 (654)
.|-|-..|++.-..++.++|++++.++...- ....+ ..+|..|-.+|++.....|-.|...|..||...|.- +.-
T Consensus 266 rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv-~~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~k---v~v 340 (898)
T COG5240 266 RPFLNSWLSDKFEMVFLEAARAVCALSEENV-GSQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQK---VSV 340 (898)
T ss_pred HHHHHHHhcCcchhhhHHHHHHHHHHHHhcc-CHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCce---eee
Confidence 3445556777668899999999998875311 11111 235777888888988889999999999999855531 111
Q ss_pred CCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHH
Q 006250 273 NNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVV 352 (654)
Q Consensus 273 ~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv 352 (654)
++ +-+=.|+.+.+ +..+.||++.. .. -|+.+.|...+
T Consensus 341 cN--~evEsLIsd~N-r~IstyAITtL---------LK-------------------------------TGt~e~idrLv 377 (898)
T COG5240 341 CN--KEVESLISDEN-RTISTYAITTL---------LK-------------------------------TGTEETIDRLV 377 (898)
T ss_pred cC--hhHHHHhhccc-ccchHHHHHHH---------HH-------------------------------cCchhhHHHHH
Confidence 11 11112222211 12334443321 11 12222222221
Q ss_pred hhhhhhcccCCCcccccCCcccccccCCCCCCccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHH
Q 006250 353 TNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRN 432 (654)
Q Consensus 353 ~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~ 432 (654)
.. ||.+++-+| | ..|.-+..||..|+-.-+.-...
T Consensus 378 ~~----------------------------I~sfvhD~S------------D-----~FKiI~ida~rsLsl~Fp~k~~s 412 (898)
T COG5240 378 NL----------------------------IPSFVHDMS------------D-----GFKIIAIDALRSLSLLFPSKKLS 412 (898)
T ss_pred HH----------------------------HHHHHHhhc------------c-----CceEEeHHHHHHHHhhCcHHHHH
Confidence 10 111111111 1 12333455555555445544444
Q ss_pred HHhhCcHHHHH-HhhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHH
Q 006250 433 LTESRALLCFA-VLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRA 511 (654)
Q Consensus 433 i~e~gaL~~L~-~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~a 511 (654)
+.+ .|. .|++.|.-+-|+.+.-||+.+- ++.|+.+. ..++-|...|+ |.+.....++-
T Consensus 413 ~l~-----FL~~~L~~eGg~eFK~~~Vdaisd~~---~~~p~skE-----------raLe~LC~fIE--Dcey~~I~vrI 471 (898)
T COG5240 413 YLD-----FLGSSLLQEGGLEFKKYMVDAISDAM---ENDPDSKE-----------RALEVLCTFIE--DCEYHQITVRI 471 (898)
T ss_pred HHH-----HHHHHHHhcccchHHHHHHHHHHHHH---hhCchHHH-----------HHHHHHHHHHh--hcchhHHHHHH
Confidence 433 332 3456667789999999987654 44555432 34566667775 34444556777
Q ss_pred HHHhhhcchhh--hhccHHHHHHHhccCCHHHHHHHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhccCCcchHH
Q 006250 512 IGNLARTFRAT--ETRIIGPLVNLLDEREPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQI 589 (654)
Q Consensus 512 lg~la~~~~~~--e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~ 589 (654)
||-|++-.+.. -.+.|..+.+-+-=.+.-|+..|+.||+||+-+-+-.-. .. ...-.|-+.|...|+.+.-
T Consensus 472 L~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~--~~-----sv~~~lkRclnD~DdeVRd 544 (898)
T COG5240 472 LGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVS--PQ-----SVENALKRCLNDQDDEVRD 544 (898)
T ss_pred HHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccccc--HH-----HHHHHHHHHhhcccHHHHH
Confidence 77777644331 124566665555445566888999999999844431111 11 1223555677777776777
Q ss_pred HHHHHHHHH
Q 006250 590 PALTLLCYI 598 (654)
Q Consensus 590 ~Al~~L~~i 598 (654)
.|..+|.++
T Consensus 545 rAsf~l~~~ 553 (898)
T COG5240 545 RASFLLRNM 553 (898)
T ss_pred HHHHHHHhh
Confidence 788888777
No 93
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=95.08 E-value=0.42 Score=48.15 Aligned_cols=105 Identities=16% Similarity=0.150 Sum_probs=66.9
Q ss_pred cCCCHHHHHHHHHHHHHhccCC--chhHHHHHhc--CCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcchHHHHHHcCch
Q 006250 159 HTGSMEEKCDAAASLVSLARDN--DRYGKLIIEE--GGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIVNAGVC 234 (654)
Q Consensus 159 ~s~~~~~k~~Aa~aL~~La~~~--~~~~~~I~e~--G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~~iv~~GaI 234 (654)
.+.+-+.|.+|...|..+...+ ......+.+. ..++.++..+.+....+...|+.++..|+..-...-.-.-...+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 4668889999999999998665 2333444332 56677777887777778899999999998652222211234478
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHhcCC
Q 006250 235 STFAKNLKDGHMKVQSVVAWAVSELASNH 263 (654)
Q Consensus 235 p~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~ 263 (654)
|+|++.+.++...+++.|..+|..|....
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~ 125 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESC 125 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHC
Confidence 99999999998899999999999999844
No 94
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.92 E-value=0.13 Score=45.32 Aligned_cols=67 Identities=21% Similarity=0.182 Sum_probs=52.1
Q ss_pred CCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcchHHHHH--HcCchHHHHHhhcCCChhHHHHHHHHHHHHh
Q 006250 191 GGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIV--NAGVCSTFAKNLKDGHMKVQSVVAWAVSELA 260 (654)
Q Consensus 191 G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~~iv--~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa 260 (654)
-.+||++.++.+.+..++..|+.+|+||+.... ..+. -....+.|.+++.++++.||. +++.|-++-
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~--~~~l~~f~~IF~~L~kl~~D~d~~Vr~-~a~~Ld~ll 95 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKVAR--GEILPYFNEIFDALCKLSADPDENVRS-AAELLDRLL 95 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcCCchhHHH-HHHHHHHHh
Confidence 368999999999999999999999999996532 2332 345778888999899999877 556666553
No 95
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=94.83 E-value=2 Score=48.90 Aligned_cols=124 Identities=16% Similarity=0.132 Sum_probs=83.5
Q ss_pred cccccCCCHHHHHHHHHHHHHhccCCchh-HHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcchHHHHHHcCc
Q 006250 155 IAILHTGSMEEKCDAAASLVSLARDNDRY-GKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIVNAGV 233 (654)
Q Consensus 155 V~lL~s~~~~~k~~Aa~aL~~La~~~~~~-~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~~iv~~Ga 233 (654)
.....+....+|..|..+...+...-+.+ .+. .+|+++.=+.+..-..+..++..|+.++......-.......
T Consensus 222 l~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~-----llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~i 296 (569)
T KOG1242|consen 222 LTNFGDKINKVREAAVEAAKAIMRCLSAYAVKL-----LLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDL 296 (569)
T ss_pred HHHhhccchhhhHHHHHHHHHHHHhcCcchhhH-----hhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHh
Confidence 44444556677766655555553221222 121 356666655544556788899999999877666666777889
Q ss_pred hHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCc
Q 006250 234 CSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFET 287 (654)
Q Consensus 234 Ip~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~ 287 (654)
||.+.+.|.+..+++|+.+..+|-.++. --++-+ |. -.+|.|++-+..++
T Consensus 297 iP~lsevl~DT~~evr~a~~~~l~~~~s-vidN~d-I~--~~ip~Lld~l~dp~ 346 (569)
T KOG1242|consen 297 IPVLSEVLWDTKPEVRKAGIETLLKFGS-VIDNPD-IQ--KIIPTLLDALADPS 346 (569)
T ss_pred hHHHHHHHccCCHHHHHHHHHHHHHHHH-hhccHH-HH--HHHHHHHHHhcCcc
Confidence 9999999999999999999999999987 223322 21 15788888887653
No 96
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.80 E-value=0.77 Score=52.58 Aligned_cols=70 Identities=17% Similarity=0.225 Sum_probs=53.3
Q ss_pred hhhcCcchhhHHHHHHHHhhhcchhhhhccHHHHHHHhccCCHHHHHHHHHHHHhccccCCCCCHHHHHHH
Q 006250 497 VEKADSDLLIPSIRAIGNLARTFRATETRIIGPLVNLLDEREPEVIMEATVALNKFATTENYLSETHSKAI 567 (654)
Q Consensus 497 l~~~~~~l~~~~~~alg~la~~~~~~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~I 567 (654)
++.+--+|++.++.+++.||.+.+.-....+..||+++++...+|+..|..+|..++... ....++-..|
T Consensus 382 lEDEf~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l-~i~eeql~~i 451 (823)
T KOG2259|consen 382 LEDEFYEVRRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHL-AIREEQLRQI 451 (823)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh-eecHHHHHHH
Confidence 444446899999999999998766655568899999999999999999999999886322 2234444444
No 97
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=94.76 E-value=1.3 Score=52.63 Aligned_cols=67 Identities=15% Similarity=0.297 Sum_probs=49.1
Q ss_pred HHHHHHHHhh--hcCcchhhHHHHHHHHhhhcchhhhhc-cHHHHHHHhccCCHHHHHHHHHHHHhcccc
Q 006250 489 VLEQLLHIVE--KADSDLLIPSIRAIGNLARTFRATETR-IIGPLVNLLDEREPEVIMEATVALNKFATT 555 (654)
Q Consensus 489 vv~~L~~ll~--~~~~~l~~~~~~alg~la~~~~~~e~~-~I~pLV~lL~~~~~~v~~eAa~AL~~~a~~ 555 (654)
++..|+.=+. +.++..+.-|.-++|.+.+.+...-.+ .-..+++.+++...+|+..|+.||++++.|
T Consensus 818 ~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vg 887 (1233)
T KOG1824|consen 818 LATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVG 887 (1233)
T ss_pred HHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcC
Confidence 3344444344 233678899999999999876653222 334677889999999999999999999864
No 98
>PF05536 Neurochondrin: Neurochondrin
Probab=94.66 E-value=0.12 Score=59.26 Aligned_cols=95 Identities=15% Similarity=0.218 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHhccCCchhH--HHHHhcCCHHHHHHhhccCCH-HHHHHHHHHHHHhcCCcchHHHHHHcCchHHHHH
Q 006250 163 MEEKCDAAASLVSLARDNDRYG--KLIIEEGGVPPLLKLAYEGEL-EGQENAARAIGLLGRDAESVEQIVNAGVCSTFAK 239 (654)
Q Consensus 163 ~~~k~~Aa~aL~~La~~~~~~~--~~I~e~G~Ip~LV~LL~s~~~-~~q~~Aa~AL~nLa~~~e~~~~iv~~GaIp~Lv~ 239 (654)
...+.-|...|..++.+ ++.. ..++ +-||.|++++.+.+. .....+..+|..++.+++.++.+++.|+||.|.+
T Consensus 71 ~~~~~LavsvL~~f~~~-~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~e 147 (543)
T PF05536_consen 71 EEYLSLAVSVLAAFCRD-PELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCE 147 (543)
T ss_pred HHHHHHHHHHHHHHcCC-hhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHH
Confidence 45667788888888875 5443 3332 569999999988776 8999999999999999999999999999999999
Q ss_pred hhcCCChhHHHHHHHHHHHHhc
Q 006250 240 NLKDGHMKVQSVVAWAVSELAS 261 (654)
Q Consensus 240 LL~s~~~~vq~~Aa~aL~nLa~ 261 (654)
.+.+ .+...+.|..++.++..
T Consensus 148 i~~~-~~~~~E~Al~lL~~Lls 168 (543)
T PF05536_consen 148 IIPN-QSFQMEIALNLLLNLLS 168 (543)
T ss_pred HHHh-CcchHHHHHHHHHHHHH
Confidence 9987 45667889999999876
No 99
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=94.63 E-value=1.5 Score=45.26 Aligned_cols=55 Identities=25% Similarity=0.275 Sum_probs=38.3
Q ss_pred cHHHHHHHh--ccCCHHHHHHHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhccCCcchHHHHHHHH
Q 006250 526 IIGPLVNLL--DEREPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLL 595 (654)
Q Consensus 526 ~I~pLV~lL--~~~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L 595 (654)
.||.|.+.| .+.++.|+.||+.||+..+.. .+++.|.+.+...++++...+..+|
T Consensus 219 ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e---------------~~~~vL~e~~~D~~~vv~esc~val 275 (289)
T KOG0567|consen 219 AIPSLIKVLLDETEHPMVRHEAAEALGAIADE---------------DCVEVLKEYLGDEERVVRESCEVAL 275 (289)
T ss_pred hhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH---------------HHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 589999888 455788999999999988632 2456777777666665544433333
No 100
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.39 E-value=0.72 Score=55.20 Aligned_cols=131 Identities=14% Similarity=0.115 Sum_probs=110.1
Q ss_pred cccccCCCHHHHHHHHHHHHHh-ccCCchhHHHHHhcCCHHHHHHhhccC-C--HHHHHHHHHHHHHhcCC-cchHHHHH
Q 006250 155 IAILHTGSMEEKCDAAASLVSL-ARDNDRYGKLIIEEGGVPPLLKLAYEG-E--LEGQENAARAIGLLGRD-AESVEQIV 229 (654)
Q Consensus 155 V~lL~s~~~~~k~~Aa~aL~~L-a~~~~~~~~~I~e~G~Ip~LV~LL~s~-~--~~~q~~Aa~AL~nLa~~-~e~~~~iv 229 (654)
+++|++...+.|--=+..-..+ |.+ +.++..+++++|-..+++.|..+ . ++-+.-||..|.-++.+ +-.++...
T Consensus 518 LKLLQS~a~ELrpiLVFIWAKILAvD-~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl 596 (1387)
T KOG1517|consen 518 LKLLQSSARELRPILVFIWAKILAVD-PSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACL 596 (1387)
T ss_pred HHHhccchHhhhhhHHHHHHHHHhcC-chhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhc
Confidence 8999999999887655555565 544 88999999999999999999873 2 47778899999999987 56778888
Q ss_pred HcCchHHHHHhhcCC-ChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccC
Q 006250 230 NAGVCSTFAKNLKDG-HMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFE 286 (654)
Q Consensus 230 ~~GaIp~Lv~LL~s~-~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~ 286 (654)
+.+-|..-...|.++ .+-++.-.+-+|+.|=.+.++.|-.=.+.++...|..+|++.
T Consensus 597 ~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~ 654 (1387)
T KOG1517|consen 597 NGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDP 654 (1387)
T ss_pred cccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCc
Confidence 889999888899885 577889999999999988889988888899999999999865
No 101
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=94.38 E-value=1.2 Score=50.67 Aligned_cols=114 Identities=18% Similarity=0.149 Sum_probs=80.4
Q ss_pred hhhHHHHcccccCCCHHHHHHHHHHHHHhccCCchh--HHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCC---c
Q 006250 148 LCLIWEQIAILHTGSMEEKCDAAASLVSLARDNDRY--GKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRD---A 222 (654)
Q Consensus 148 ~~~v~~lV~lL~s~~~~~k~~Aa~aL~~La~~~~~~--~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~---~ 222 (654)
..+|.....+|++..+.+|.+|+...+.|+..-..+ -+.+...|.| |.+-|....+++.-.-..|++.|.+. .
T Consensus 603 ~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~ypEvLgsil~Ai~~I~sv~~~~ 680 (975)
T COG5181 603 SMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGEDYPEVLGSILKAICSIYSVHRFR 680 (975)
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCcccHHHHHHHHHHHHHHhhhhccc
Confidence 345777789999999999999999999887431111 2444555654 56667777777665444444444432 1
Q ss_pred chHHHHHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChh
Q 006250 223 ESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPK 265 (654)
Q Consensus 223 e~~~~iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~ 265 (654)
.-+.- -.|.+|.|.-+|++...+++.+....++-|+..+|+
T Consensus 681 ~mqpP--i~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~pe 721 (975)
T COG5181 681 SMQPP--ISGILPSLTPILRNKHQKVVANTIALVGTICMNSPE 721 (975)
T ss_pred ccCCc--hhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcc
Confidence 11111 257899999999999999999999999999987776
No 102
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.30 E-value=8.7 Score=40.93 Aligned_cols=132 Identities=14% Similarity=0.063 Sum_probs=100.6
Q ss_pred HcccccCCCHHHHHHHHHHHHHhccCCchh----HHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcchHHHHH
Q 006250 154 QIAILHTGSMEEKCDAAASLVSLARDNDRY----GKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIV 229 (654)
Q Consensus 154 lV~lL~s~~~~~k~~Aa~aL~~La~~~~~~----~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~~iv 229 (654)
|-..|..++..+|.-|+..++.+-.+.+.| ...++..|..|.++.++...+.++-..|...|..|+..+..-+.+.
T Consensus 87 LQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaaleaiF 166 (524)
T KOG4413|consen 87 LQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIF 166 (524)
T ss_pred HHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhc
Confidence 455677888999999999999987666644 4566789999999999999999999999999999999988888888
Q ss_pred HcCchHHHHHh--hcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhcc
Q 006250 230 NAGVCSTFAKN--LKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAF 285 (654)
Q Consensus 230 ~~GaIp~Lv~L--L~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~ 285 (654)
+..-..++--. -..-+.-++..+...+-.|.+-+++.....-+.|.+..|..=|..
T Consensus 167 eSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkG 224 (524)
T KOG4413|consen 167 ESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKG 224 (524)
T ss_pred ccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcC
Confidence 77766554322 122233456667777778877788887777778877777666653
No 103
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.93 E-value=16 Score=42.68 Aligned_cols=120 Identities=18% Similarity=0.193 Sum_probs=81.3
Q ss_pred hhHHHHcccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCC--HHHHHHHHHHHHHhcCC-cchH
Q 006250 149 CLIWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGE--LEGQENAARAIGLLGRD-AESV 225 (654)
Q Consensus 149 ~~v~~lV~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~--~~~q~~Aa~AL~nLa~~-~e~~ 225 (654)
..+..+-.-|.+.++.-..-|..+++|+-. -+++..+. .-|| ++|.+++ +-++..||-+|..|-+. |+
T Consensus 111 lvin~iknDL~srn~~fv~LAL~~I~niG~--re~~ea~~--~DI~---KlLvS~~~~~~vkqkaALclL~L~r~spD-- 181 (938)
T KOG1077|consen 111 LVINSIKNDLSSRNPTFVCLALHCIANIGS--REMAEAFA--DDIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPD-- 181 (938)
T ss_pred HHHHHHHhhhhcCCcHHHHHHHHHHHhhcc--HhHHHHhh--hhhH---HHHhCCcchHHHHHHHHHHHHHHHhcCcc--
Confidence 344444566777788888889999999863 24555443 2355 7777776 56788888888887764 33
Q ss_pred HHHHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhh
Q 006250 226 EQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHL 283 (654)
Q Consensus 226 ~~iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL 283 (654)
.+-..+-...+++||.+.+..|-..+...+--|+...|+... +.+++-|.-|
T Consensus 182 -l~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk-----~~~~~avs~L 233 (938)
T KOG1077|consen 182 -LVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYK-----TCLPLAVSRL 233 (938)
T ss_pred -ccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHh-----hhHHHHHHHH
Confidence 122234577899999998899888888888888886655332 3455555444
No 104
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=93.88 E-value=17 Score=42.70 Aligned_cols=148 Identities=16% Similarity=0.177 Sum_probs=97.6
Q ss_pred HHHhhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHH-HHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcch
Q 006250 442 FAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAA-KAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFR 520 (654)
Q Consensus 442 L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~-~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~ 520 (654)
...+|+++..+|+..||..++-|+.+-....+-. ... .++ -|..-|..+.++++-....||-++.....
T Consensus 804 iL~rLnnksa~vRqqaadlis~la~Vlktc~ee~--------~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nvig 873 (1172)
T KOG0213|consen 804 ILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEK--------LMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNVIG 873 (1172)
T ss_pred HHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHH--------HHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHhcc
Confidence 4678999999999999999988875543221100 000 112 35566777778888777777777765321
Q ss_pred h-----hhhccHHHHHHHhccCCHHHHHHHHHHHHhccc-cCCCCCH-HHHHHHHHCCCHHHHHHhhccCCcchHHHHHH
Q 006250 521 A-----TETRIIGPLVNLLDEREPEVIMEATVALNKFAT-TENYLSE-THSKAIINAGGVKHLIQLVYFGEQMIQIPALT 593 (654)
Q Consensus 521 ~-----~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a~-~~n~~~~-~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~ 593 (654)
- .-.+++|.|.-.|++++..|+.+...-++.+|. +..|... |..+.- =-|+.+|++....+...|..
T Consensus 874 m~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIc------feLlelLkahkK~iRRaa~n 947 (1172)
T KOG0213|consen 874 MTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRIC------FELLELLKAHKKEIRRAAVN 947 (1172)
T ss_pred ccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHH------HHHHHHHHHHHHHHHHHHHh
Confidence 1 123578888888999999999998877777762 2224443 222221 24778888777667777889
Q ss_pred HHHHHHhCCCch
Q 006250 594 LLCYIAIKQPES 605 (654)
Q Consensus 594 ~L~~ia~~~~~~ 605 (654)
.+.||+.-.|-+
T Consensus 948 TfG~IakaIGPq 959 (1172)
T KOG0213|consen 948 TFGYIAKAIGPQ 959 (1172)
T ss_pred hhhHHHHhcCHH
Confidence 999997655543
No 105
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.69 E-value=0.44 Score=55.38 Aligned_cols=162 Identities=19% Similarity=0.245 Sum_probs=116.8
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHH
Q 006250 412 KAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLE 491 (654)
Q Consensus 412 k~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~ 491 (654)
+...-+.|..+..|-+ -+...+.+++.....+-++|+-+=-=+++.+ ...|++.. ..|+
T Consensus 31 ~~a~kkvIa~Mt~G~D-------vSslF~dvvk~~~T~dlelKKlvyLYl~nYa---~~~P~~a~-----------~avn 89 (734)
T KOG1061|consen 31 KDAVKKVIAYMTVGKD-------VSSLFPDVVKCMQTRDLELKKLVYLYLMNYA---KGKPDLAI-----------LAVN 89 (734)
T ss_pred HHHHHHHHhcCccCcc-------hHhhhHHHHhhcccCCchHHHHHHHHHHHhh---ccCchHHH-----------hhhh
Confidence 3445566777776632 2456777888888888899998887787776 33455443 3445
Q ss_pred HHHHHhhhcCcchhhHHHHHHHHhhhcchhhhhccHHHHHHHhccCCHHHHHHHHHHHHhccccCCCCCHHHHHHHHHCC
Q 006250 492 QLLHIVEKADSDLLIPSIRAIGNLARTFRATETRIIGPLVNLLDEREPEVIMEATVALNKFATTENYLSETHSKAIINAG 571 (654)
Q Consensus 492 ~L~~ll~~~~~~l~~~~~~alg~la~~~~~~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~g 571 (654)
-+++=.++.++.++.-|+++.|++- +...-...+.||.++|++.++++++-|+.-+.++-.. +....++.|
T Consensus 90 t~~kD~~d~np~iR~lAlrtm~~l~--v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~-------~~~~~~~~g 160 (734)
T KOG1061|consen 90 TFLKDCEDPNPLIRALALRTMGCLR--VDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDI-------DPDLVEDSG 160 (734)
T ss_pred hhhccCCCCCHHHHHHHhhceeeEe--ehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcC-------Chhhccccc
Confidence 5555555666777877777777654 3333334689999999999999999999999998432 234556788
Q ss_pred CHHHHHHhhccCCcchHHHHHHHHHHHHhCCC
Q 006250 572 GVKHLIQLVYFGEQMIQIPALTLLCYIAIKQP 603 (654)
Q Consensus 572 gi~~Lv~LL~~~~~~~q~~Al~~L~~ia~~~~ 603 (654)
-+..|.+|+..+++.+...|+.+|..|....+
T Consensus 161 l~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 161 LVDALKDLLSDSNPMVVANALAALSEIHESHP 192 (734)
T ss_pred hhHHHHHHhcCCCchHHHHHHHHHHHHHHhCC
Confidence 88999999998888788889999999975444
No 106
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=93.62 E-value=0.31 Score=40.61 Aligned_cols=66 Identities=11% Similarity=0.209 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHcCchHHHHHhhcC-CChhHHHHHHHHHHHHhcCChhhHHHHHhCC
Q 006250 208 QENAARAIGLLGRDAESVEQIVNAGVCSTFAKNLKD-GHMKVQSVVAWAVSELASNHPKCQDHFAQNN 274 (654)
Q Consensus 208 q~~Aa~AL~nLa~~~e~~~~iv~~GaIp~Lv~LL~s-~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g 274 (654)
.+.|.||++++++.+..-..+-+.+.++.++++..+ +...+|-.+-.+|+-++. ..+.++.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~-T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS-TEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC-CHHHHHHHHHcC
Confidence 478999999999988888888889999999999975 568899999999999998 777777776655
No 107
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=93.53 E-value=10 Score=41.62 Aligned_cols=129 Identities=21% Similarity=0.237 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHH
Q 006250 410 QMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAV 489 (654)
Q Consensus 410 ~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~v 489 (654)
.++..|..+|..++-.|+ +.+.++|++..|...+-++..++....++++.++- ++|.-|+. +.+.. -
T Consensus 123 ~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lL----d~p~tR~y-l~~~~-----d 189 (371)
T PF14664_consen 123 RLRRICLETLCELALLNP---ELVAECGGIRVLLRALIDGSFSISESLLDTLLYLL----DSPRTRKY-LRPGF-----D 189 (371)
T ss_pred HHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHh----CCcchhhh-hcCCc-----c
Confidence 478889999999988766 45678999999999888887788889999999986 34555542 11111 1
Q ss_pred HHHHHHHhhhc-------Cc--chhhHHHHHHHHhhhcchh------hhhccHHHHHHHhccCCHHHHHHHHHHHHh
Q 006250 490 LEQLLHIVEKA-------DS--DLLIPSIRAIGNLARTFRA------TETRIIGPLVNLLDEREPEVIMEATVALNK 551 (654)
Q Consensus 490 v~~L~~ll~~~-------~~--~l~~~~~~alg~la~~~~~------~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~ 551 (654)
++.++..+.+. +. +....+..+|..+=++... ...+++.-||+.|.-+.+++++....-|..
T Consensus 190 L~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~d 266 (371)
T PF14664_consen 190 LESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFD 266 (371)
T ss_pred HHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 23333333332 12 2445667777666664332 222578889999988888887776666533
No 108
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=93.23 E-value=0.13 Score=35.16 Aligned_cols=28 Identities=18% Similarity=0.188 Sum_probs=25.7
Q ss_pred hHHHHHhhcCCChhHHHHHHHHHHHHhc
Q 006250 234 CSTFAKNLKDGHMKVQSVVAWAVSELAS 261 (654)
Q Consensus 234 Ip~Lv~LL~s~~~~vq~~Aa~aL~nLa~ 261 (654)
+|.+++++++++++||..|+++|+.|+.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 7999999999999999999999999986
No 109
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=92.99 E-value=0.12 Score=35.40 Aligned_cols=28 Identities=32% Similarity=0.481 Sum_probs=24.6
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHhcc
Q 006250 526 IIGPLVNLLDEREPEVIMEATVALNKFA 553 (654)
Q Consensus 526 ~I~pLV~lL~~~~~~v~~eAa~AL~~~a 553 (654)
++|.++++|++.+++|+..|+++|++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999885
No 110
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=92.86 E-value=1.4 Score=50.19 Aligned_cols=139 Identities=14% Similarity=0.167 Sum_probs=90.9
Q ss_pred CcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhh
Q 006250 437 RALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLA 516 (654)
Q Consensus 437 gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la 516 (654)
|.||.|.-+|++....|+.|...-+.-|+..+.+-.-.|. =..+.--|+++|.+++.+++..|..++|+++
T Consensus 688 ~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rE---------WMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is 758 (975)
T COG5181 688 GILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVRE---------WMRICFELVDSLKSWNKEIRRNATETFGCIS 758 (975)
T ss_pred hccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHH---------HHHHHHHHHHHHHHhhHHHHHhhhhhhhhHH
Confidence 6888888899999999999999999989866554322221 0123446888899999999999999999999
Q ss_pred hcchhhhhccHHHHHHHhc--cCCHHHHHHHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhccCCcchHHHHHHH
Q 006250 517 RTFRATETRIIGPLVNLLD--EREPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTL 594 (654)
Q Consensus 517 ~~~~~~e~~~I~pLV~lL~--~~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~ 594 (654)
+.....+ +...|++=|+ ++...|....++++-.-.|+. ...+|.|++=...++..+|--.+.+
T Consensus 759 ~aiGPqd--vL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp-------------fsVlP~lm~dY~TPe~nVQnGvLka 823 (975)
T COG5181 759 RAIGPQD--VLDILLNNLKVQERQQRVCTSVAISIVAEYCGP-------------FSVLPTLMSDYETPEANVQNGVLKA 823 (975)
T ss_pred hhcCHHH--HHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc-------------hhhHHHHHhcccCchhHHHHhHHHH
Confidence 7443322 3333333343 233334444444442222333 2356777776666676778778888
Q ss_pred HHHHH
Q 006250 595 LCYIA 599 (654)
Q Consensus 595 L~~ia 599 (654)
+|.+=
T Consensus 824 m~fmF 828 (975)
T COG5181 824 MCFMF 828 (975)
T ss_pred HHHHH
Confidence 88764
No 111
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=92.43 E-value=0.19 Score=56.00 Aligned_cols=118 Identities=14% Similarity=0.115 Sum_probs=93.6
Q ss_pred cccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcch--HHHHHHcC
Q 006250 155 IAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAES--VEQIVNAG 232 (654)
Q Consensus 155 V~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~--~~~iv~~G 232 (654)
++.|..++..++.-+...++|+...-...+..+.+.|.|..|++++.+.|..+|.++.|.|.++..+.++ +-.....-
T Consensus 437 i~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf~~Laki 516 (743)
T COG5369 437 IDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKFKFLAKI 516 (743)
T ss_pred HHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhhhhHHhc
Confidence 5666666666666677888888655455688889999999999999999999999999999999987433 44566777
Q ss_pred chHHHHHhhcCCChhHHHHHHHHHHHHhcCChh---hHHHHHh
Q 006250 233 VCSTFAKNLKDGHMKVQSVVAWAVSELASNHPK---CQDHFAQ 272 (654)
Q Consensus 233 aIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~---~r~~i~~ 272 (654)
++..++.+.+++.-.+|++....|.|+..+... ..+.+.+
T Consensus 517 g~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K 559 (743)
T COG5369 517 GVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIK 559 (743)
T ss_pred CHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEe
Confidence 889999999999999999999999999874333 4444444
No 112
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=92.33 E-value=1.2 Score=46.23 Aligned_cols=85 Identities=15% Similarity=0.044 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHhc-CCcchHHHHHHcCchHHHHHhhc-CCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhc
Q 006250 207 GQENAARAIGLLG-RDAESVEQIVNAGVCSTFAKNLK-DGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLA 284 (654)
Q Consensus 207 ~q~~Aa~AL~nLa-~~~e~~~~iv~~GaIp~Lv~LL~-s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~ 284 (654)
....|...|.-++ .++..+....+..++..|+++|. +..+.++..+..+|..+-.+++.+...|-+.+|+..++.+++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 4566778888777 46889999999999999999995 456889999999999888889999999999999999999999
Q ss_pred cCchhhh
Q 006250 285 FETVQEH 291 (654)
Q Consensus 285 ~~~~~~~ 291 (654)
+......
T Consensus 187 ~~~~~~~ 193 (257)
T PF08045_consen 187 SKSTDRE 193 (257)
T ss_pred cccccHH
Confidence 8754333
No 113
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=92.31 E-value=0.61 Score=52.42 Aligned_cols=114 Identities=18% Similarity=0.175 Sum_probs=90.8
Q ss_pred HHHHHHhccCCchhHHHHHhcCCHHHHHHhh----------ccCCHHHHHHHHHHHHHhcCC-cchHHHHHHcCchHHHH
Q 006250 170 AASLVSLARDNDRYGKLIIEEGGVPPLLKLA----------YEGELEGQENAARAIGLLGRD-AESVEQIVNAGVCSTFA 238 (654)
Q Consensus 170 a~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL----------~s~~~~~q~~Aa~AL~nLa~~-~e~~~~iv~~GaIp~Lv 238 (654)
..+|+-++++ +.+.+.+....++..|.++- ...+.++..+|..+|+|+-.. +..|+..++.|..+.++
T Consensus 2 L~~LRiLsRd-~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 2 LETLRILSRD-PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred HHHHHHHccC-cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 4567777766 66777777777777777765 233578899999999999976 67788899999999999
Q ss_pred HhhcCC-----ChhHHHHHHHHHHHHhcCChhhHHHHHhC-CcHHHHHHhhc
Q 006250 239 KNLKDG-----HMKVQSVVAWAVSELASNHPKCQDHFAQN-NIVRFLVSHLA 284 (654)
Q Consensus 239 ~LL~s~-----~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~-g~I~~LV~LL~ 284 (654)
+.|+.. +.+++-.....|.-++...++.+..++++ +++..++..|.
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~ 132 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALE 132 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHH
Confidence 999876 67888888899988887777888777764 78888888774
No 114
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=92.27 E-value=0.24 Score=45.15 Aligned_cols=70 Identities=17% Similarity=0.137 Sum_probs=57.4
Q ss_pred hHHHHccccc-CCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhc
Q 006250 150 LIWEQIAILH-TGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLG 219 (654)
Q Consensus 150 ~v~~lV~lL~-s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa 219 (654)
++..|+++|. +.++....-|+.=|+.+.+..|.-|..+-+.|+=..+++|+.+++++++.+|..|+..|-
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 4566788884 557777788999999999887888888878899999999999999999999999998764
No 115
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=92.13 E-value=21 Score=39.26 Aligned_cols=112 Identities=11% Similarity=0.105 Sum_probs=87.3
Q ss_pred CCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhc-cC---CHHHHHHHHHHHHHhcCCcchHHHHHHcCchHH
Q 006250 161 GSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAY-EG---ELEGQENAARAIGLLGRDAESVEQIVNAGVCST 236 (654)
Q Consensus 161 ~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~-s~---~~~~q~~Aa~AL~nLa~~~e~~~~iv~~GaIp~ 236 (654)
=.+.+-..|+..+..+-.+.|..-..+.|.|.++.+++-+. .+ +.++...--.+|..||-+....+.+.+.++++.
T Consensus 121 FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~ 200 (379)
T PF06025_consen 121 FGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDK 200 (379)
T ss_pred cchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHH
Confidence 35677788999999998776777888889999999999887 44 356666667888999999999999999999999
Q ss_pred HHHhhcCCCh--hHHH-HHH----HHHHHHhcCChhhHHHHHh
Q 006250 237 FAKNLKDGHM--KVQS-VVA----WAVSELASNHPKCQDHFAQ 272 (654)
Q Consensus 237 Lv~LL~s~~~--~vq~-~Aa----~aL~nLa~~~~~~r~~i~~ 272 (654)
+.+++.+++- .++. ..+ .++-.|..|.|..|..+.+
T Consensus 201 ~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~ 243 (379)
T PF06025_consen 201 LFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIID 243 (379)
T ss_pred HHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence 9999987642 1222 233 3455678889998888776
No 116
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=91.79 E-value=0.55 Score=45.82 Aligned_cols=91 Identities=16% Similarity=0.231 Sum_probs=70.1
Q ss_pred cchhhHHHHHHHHhhhcchhhhhccHHHHHHHhccCCHHHHHHHHHHHHhccccCCCCCHHHHHHHHHCCCH-HHHHHhh
Q 006250 502 SDLLIPSIRAIGNLARTFRATETRIIGPLVNLLDEREPEVIMEATVALNKFATTENYLSETHSKAIINAGGV-KHLIQLV 580 (654)
Q Consensus 502 ~~l~~~~~~alg~la~~~~~~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi-~~Lv~LL 580 (654)
+.++..++.++|-|+.-+++.-...+|.+...|++.++.|++.|...|+++...+ +... .|-+ ..++.++
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d-~ik~--------k~~l~~~~l~~l 72 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILED-MIKV--------KGQLFSRILKLL 72 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC-ceee--------hhhhhHHHHHHH
Confidence 5677888999999998888765578999999999999999999999999997554 2211 1222 5666777
Q ss_pred ccCCcchHHHHHHHHHHHHhC
Q 006250 581 YFGEQMIQIPALTLLCYIAIK 601 (654)
Q Consensus 581 ~~~~~~~q~~Al~~L~~ia~~ 601 (654)
...++.++..|...+..+..+
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 666777777788888888655
No 117
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=91.62 E-value=0.92 Score=39.91 Aligned_cols=59 Identities=20% Similarity=0.281 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhhh----hccHHHHHHHhccCCHHHHHHH
Q 006250 487 KAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRATE----TRIIGPLVNLLDEREPEVIMEA 545 (654)
Q Consensus 487 ~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~e----~~~I~pLV~lL~~~~~~v~~eA 545 (654)
+.++++++..+.+.+..++..++.+|.++++.++..- ..+...|.+++.+.++.|+..|
T Consensus 26 ~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a 88 (97)
T PF12755_consen 26 DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA 88 (97)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH
Confidence 5678889999999999999999999999998765421 2356777888888888887665
No 118
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=91.43 E-value=5.6 Score=47.63 Aligned_cols=103 Identities=17% Similarity=0.235 Sum_probs=67.7
Q ss_pred CcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcC-cchhhHHHHHHHHh
Q 006250 437 RALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKAD-SDLLIPSIRAIGNL 515 (654)
Q Consensus 437 gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~-~~l~~~~~~alg~l 515 (654)
+.+-|++--|.+...-|++.++.+|+.++.... ..+-..+++-|++=+.... +....--+..||.+
T Consensus 174 ~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~-------------~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i 240 (1233)
T KOG1824|consen 174 SILKCLLPQLQSPRLAVRKKAITALGHLASSCN-------------RDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAI 240 (1233)
T ss_pred HHHHHHhhcccChHHHHHHHHHHHHHHHHHhcC-------------HHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHH
Confidence 456666667788888999999999998874332 1222456666666665433 44445566777777
Q ss_pred hhc----chhhhhccHHHHHHHh---ccCCHHHHHHHHHHHHhc
Q 006250 516 ART----FRATETRIIGPLVNLL---DEREPEVIMEATVALNKF 552 (654)
Q Consensus 516 a~~----~~~~e~~~I~pLV~lL---~~~~~~v~~eAa~AL~~~ 552 (654)
+|. |...-.+++|.+.+.. .+.+.+.+.....|+.-|
T Consensus 241 ~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~f 284 (1233)
T KOG1824|consen 241 CRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESF 284 (1233)
T ss_pred HHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHH
Confidence 774 3333346788888888 666777777666666554
No 119
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=91.29 E-value=1.8 Score=47.40 Aligned_cols=127 Identities=15% Similarity=0.127 Sum_probs=94.7
Q ss_pred cccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCC--HHHHHHHHHHHHHhcCCcchHHHHHHcCch
Q 006250 157 ILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGE--LEGQENAARAIGLLGRDAESVEQIVNAGVC 234 (654)
Q Consensus 157 lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~--~~~q~~Aa~AL~nLa~~~e~~~~iv~~GaI 234 (654)
++-+++.+++..+.+.++.+..+ +...+.+.+.+.=--++.-|..++ ..-+++|..-+..+..-+...+. +-.|.+
T Consensus 33 ~lL~~~~~vraa~yRilRy~i~d-~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~-~~~~vv 110 (371)
T PF14664_consen 33 MLLSDSKEVRAAGYRILRYLISD-EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKE-IPRGVV 110 (371)
T ss_pred HHCCCcHHHHHHHHHHHHHHHcC-HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCccc-CCHHHH
Confidence 34445589999999999999866 667777777775445555665443 45567787777666543222221 245678
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCch
Q 006250 235 STFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETV 288 (654)
Q Consensus 235 p~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~ 288 (654)
..+|.+..+.++..+..+..+|..|+-.+| +.+.+.||++.|++.+-+++.
T Consensus 111 ralvaiae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~l~d~~~ 161 (371)
T PF14664_consen 111 RALVAIAEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRALIDGSF 161 (371)
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHHHHhccH
Confidence 889999999999999999999999999777 468899999999999987653
No 120
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.14 E-value=27 Score=41.32 Aligned_cols=161 Identities=22% Similarity=0.264 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHH
Q 006250 410 QMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAV 489 (654)
Q Consensus 410 ~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~v 489 (654)
+++..||.||=+|=.=.+++-. -.+.++-+||.+.++-|--.|++|.-+++. ++.+|-.--|
T Consensus 158 yVRk~AA~AIpKLYsLd~e~k~-----qL~e~I~~LLaD~splVvgsAv~AF~evCP---erldLIHkny---------- 219 (968)
T KOG1060|consen 158 YVRKTAAHAIPKLYSLDPEQKD-----QLEEVIKKLLADRSPLVVGSAVMAFEEVCP---ERLDLIHKNY---------- 219 (968)
T ss_pred HHHHHHHHhhHHHhcCChhhHH-----HHHHHHHHHhcCCCCcchhHHHHHHHHhch---hHHHHhhHHH----------
Confidence 3556777777777553333222 244567788999999999999999988873 3434322000
Q ss_pred HHHHHHHhhhcCcchhhHHHHHHHHhhhc-chhh-------hhc-----------------c----HHHHHH----Hhcc
Q 006250 490 LEQLLHIVEKADSDLLIPSIRAIGNLART-FRAT-------ETR-----------------I----IGPLVN----LLDE 536 (654)
Q Consensus 490 v~~L~~ll~~~~~~l~~~~~~alg~la~~-~~~~-------e~~-----------------~----I~pLV~----lL~~ 536 (654)
..|.+++..-++==|.-.+..|---||+ |... +++ . ...|++ ||.+
T Consensus 220 -rklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S 298 (968)
T KOG1060|consen 220 -RKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQS 298 (968)
T ss_pred -HHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhc
Confidence 1233333222211133333333333442 1110 000 0 111222 3578
Q ss_pred CCHHHHHHHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhccCCcchHHHHHHHHHHHHhC
Q 006250 537 REPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIAIK 601 (654)
Q Consensus 537 ~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~ia~~ 601 (654)
+++-|.+.+|.+...+|.. ++...| +++|++||++... +|...|..+..++..
T Consensus 299 ~n~sVVmA~aql~y~lAP~------~~~~~i-----~kaLvrLLrs~~~-vqyvvL~nIa~~s~~ 351 (968)
T KOG1060|consen 299 RNPSVVMAVAQLFYHLAPK------NQVTKI-----AKALVRLLRSNRE-VQYVVLQNIATISIK 351 (968)
T ss_pred CCcHHHHHHHhHHHhhCCH------HHHHHH-----HHHHHHHHhcCCc-chhhhHHHHHHHHhc
Confidence 8889999999999998732 222333 6899999998766 555444444444333
No 121
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=91.13 E-value=0.45 Score=43.38 Aligned_cols=70 Identities=19% Similarity=0.144 Sum_probs=57.2
Q ss_pred CHHHHHHhhc-cCCHHHHHHHHHHHHHhcCC-cchHHHHHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhc
Q 006250 192 GVPPLLKLAY-EGELEGQENAARAIGLLGRD-AESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELAS 261 (654)
Q Consensus 192 ~Ip~LV~LL~-s~~~~~q~~Aa~AL~nLa~~-~e~~~~iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~ 261 (654)
.+..|+++|. +.++....-|+.=|+.++.. |..+..+-+.|+=..+.+|+.+++++|+.+|.-++.-|-.
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4678899994 44677777888889988875 7778888889999999999999999999999999887654
No 122
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=91.09 E-value=1.4 Score=42.88 Aligned_cols=92 Identities=20% Similarity=0.090 Sum_probs=72.7
Q ss_pred CHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcchHHHHHHcCch-HHHHHh
Q 006250 162 SMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIVNAGVC-STFAKN 240 (654)
Q Consensus 162 ~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~~iv~~GaI-p~Lv~L 240 (654)
++.+|.++..+++.|+..-+... +..+|.+...|+++++.+++.|..+|.+|...+-.+. .|-+ ..++.+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~v-----e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~----k~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLV-----EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV----KGQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHH-----HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee----hhhhhHHHHHH
Confidence 46789999999999985433222 2468899999999999999999999999986532111 2333 778888
Q ss_pred hcCCChhHHHHHHHHHHHHhcC
Q 006250 241 LKDGHMKVQSVVAWAVSELASN 262 (654)
Q Consensus 241 L~s~~~~vq~~Aa~aL~nLa~~ 262 (654)
|.+++++++..|...+..+...
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999874
No 123
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=91.04 E-value=28 Score=38.33 Aligned_cols=59 Identities=14% Similarity=0.260 Sum_probs=43.3
Q ss_pred HHHHHcCc-hHHHHHhhcCCC---hhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhc
Q 006250 226 EQIVNAGV-CSTFAKNLKDGH---MKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLA 284 (654)
Q Consensus 226 ~~iv~~Ga-Ip~Lv~LL~s~~---~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~ 284 (654)
+-+++.+. ...|-.+++... ..+-..|+..+..+-.++|.+-..+.+.|.++.+++-+.
T Consensus 99 rnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~ 161 (379)
T PF06025_consen 99 RNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAIT 161 (379)
T ss_pred ccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHh
Confidence 34555344 445555666543 567788888888888888888888889999988888776
No 124
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=90.57 E-value=0.6 Score=52.26 Aligned_cols=118 Identities=13% Similarity=0.010 Sum_probs=93.1
Q ss_pred HHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCC-cchHHHHHHcCchHHHHHhhcCCChhH
Q 006250 170 AASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRD-AESVEQIVNAGVCSTFAKNLKDGHMKV 248 (654)
Q Consensus 170 a~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~-~e~~~~iv~~GaIp~Lv~LL~s~~~~v 248 (654)
+..|.++++.-...|--..+...+.+|+++|+.++..+...+..+++|..-. ..-+..+.+.|.|..|+.++.+.+..+
T Consensus 410 ~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaL 489 (743)
T COG5369 410 VLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDAL 489 (743)
T ss_pred HHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhh
Confidence 3444555554344466667788999999999998888888899999998865 456788999999999999999999999
Q ss_pred HHHHHHHHHHHhcCChhh-HHHHHhCCcHHHHHHhhccCc
Q 006250 249 QSVVAWAVSELASNHPKC-QDHFAQNNIVRFLVSHLAFET 287 (654)
Q Consensus 249 q~~Aa~aL~nLa~~~~~~-r~~i~~~g~I~~LV~LL~~~~ 287 (654)
|..+.|.|..+--++.+. +-.+...-++..++.+..++.
T Consensus 490 qans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc 529 (743)
T COG5369 490 QANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPC 529 (743)
T ss_pred hhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcc
Confidence 999999999987644332 334566678899999987664
No 125
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=90.13 E-value=2.4 Score=47.73 Aligned_cols=126 Identities=12% Similarity=0.038 Sum_probs=95.0
Q ss_pred ccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccC-----CHHHHHHHHHHHHHhcCC-cchHHHHHH-
Q 006250 158 LHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEG-----ELEGQENAARAIGLLGRD-AESVEQIVN- 230 (654)
Q Consensus 158 L~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~-----~~~~q~~Aa~AL~nLa~~-~e~~~~iv~- 230 (654)
....+..+...|..+|+|+-..++..|+..++.|+.+.+++.|+.. +.+.++-..+.|+-++.. ++.+..+++
T Consensus 41 ~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e 120 (446)
T PF10165_consen 41 FESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEE 120 (446)
T ss_pred ccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence 4456888999999999999988899999999999999999999987 688999999999888864 566666554
Q ss_pred cCchHHHHHhhcC-----------------CChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhc
Q 006250 231 AGVCSTFAKNLKD-----------------GHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLA 284 (654)
Q Consensus 231 ~GaIp~Lv~LL~s-----------------~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~ 284 (654)
.+++..++..|.. .+......+..++.|+..+.+.... =.....++.|+.+|.
T Consensus 121 ~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~ 190 (446)
T PF10165_consen 121 HHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILR 190 (446)
T ss_pred hhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHH
Confidence 5888888886631 0233456677888999876554333 022356777777765
No 126
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=89.86 E-value=3.6 Score=40.85 Aligned_cols=120 Identities=15% Similarity=0.102 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHhccCCchhHHHHH----------------hcCCHHHHHHhhccC------CHHHHHHHHHHHHHhcCC
Q 006250 164 EEKCDAAASLVSLARDNDRYGKLII----------------EEGGVPPLLKLAYEG------ELEGQENAARAIGLLGRD 221 (654)
Q Consensus 164 ~~k~~Aa~aL~~La~~~~~~~~~I~----------------e~G~Ip~LV~LL~s~------~~~~q~~Aa~AL~nLa~~ 221 (654)
..-..++..|.|+++. +.....+. +...+..|+.++..| ..+-....+..+.||+..
T Consensus 10 ~~adl~~MLLsNlT~~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~ 88 (192)
T PF04063_consen 10 PLADLACMLLSNLTRS-DSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQL 88 (192)
T ss_pred chHHHHHHHHHHhccc-hHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCC
Confidence 3344567778888876 33333232 223677888877552 133445678899999999
Q ss_pred cchHHHHHHcC--c--hHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHh---CCcHHHHHHhhcc
Q 006250 222 AESVEQIVNAG--V--CSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQ---NNIVRFLVSHLAF 285 (654)
Q Consensus 222 ~e~~~~iv~~G--a--Ip~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~---~g~I~~LV~LL~~ 285 (654)
++.|+.+.+.. . |..|+-.+.+.+..-+.-++.+|.|+|-+ .+....+.. .+++|.|+--|..
T Consensus 89 ~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd-~~~H~~LL~~~~~~iLp~LLlPLaG 158 (192)
T PF04063_consen 89 PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFD-TDSHEWLLSDDEVDILPYLLLPLAG 158 (192)
T ss_pred HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhcc-HhHHHHhcCchhhhhHHHHHhhccC
Confidence 99999998653 3 55566666777777778899999999994 455555555 3567776666653
No 127
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=89.79 E-value=2.4 Score=41.12 Aligned_cols=104 Identities=16% Similarity=0.224 Sum_probs=73.2
Q ss_pred cccccCCCHHHHHHHHHHHHHhcc-CCchhHHHHHhcCCHHHHHHhhcc---------CCHHHHHHHHHHHHHhcCCcch
Q 006250 155 IAILHTGSMEEKCDAAASLVSLAR-DNDRYGKLIIEEGGVPPLLKLAYE---------GELEGQENAARAIGLLGRDAES 224 (654)
Q Consensus 155 V~lL~s~~~~~k~~Aa~aL~~La~-~~~~~~~~I~e~G~Ip~LV~LL~s---------~~~~~q~~Aa~AL~nLa~~~e~ 224 (654)
|..|+++.... .-...|...-+ .+....+..++.||+..|+.+|.. .+...+.....+|..|..++..
T Consensus 72 i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G 149 (187)
T PF06371_consen 72 IKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYG 149 (187)
T ss_dssp HHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHH
T ss_pred HHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHH
Confidence 67776665443 22223322222 223556777899999999999852 2357888999999999988777
Q ss_pred HHHHHH-cCchHHHHHhhcCCChhHHHHHHHHHHHHh
Q 006250 225 VEQIVN-AGVCSTFAKNLKDGHMKVQSVVAWAVSELA 260 (654)
Q Consensus 225 ~~~iv~-~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa 260 (654)
...++. .+.+..|+..|.+++..++..+...|..+|
T Consensus 150 ~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 150 LEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 776665 789999999999999999999999998876
No 128
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=89.69 E-value=23 Score=37.82 Aligned_cols=109 Identities=24% Similarity=0.242 Sum_probs=74.6
Q ss_pred HHHHcccccCCCHHHHHHHHHHHHHhccCCchhHHHHHh--cCCHHHHHHhhccCCHHHHHHHHHHHHHhcCC---cchH
Q 006250 151 IWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIE--EGGVPPLLKLAYEGELEGQENAARAIGLLGRD---AESV 225 (654)
Q Consensus 151 v~~lV~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e--~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~---~e~~ 225 (654)
+.+.|..|.......|+.|...|.++..... ..+.+.+ .-.++.+.+.++.|+.+-+.-|+.++.-++.. .+..
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~-~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~ 123 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRY-LPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS 123 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH
Confidence 4455778887889999999999999865422 2333322 24678888899999877777787877777643 2444
Q ss_pred HHHHHcCchHHHHHhhcCCCh--hHHHHHHHHHHHHhc
Q 006250 226 EQIVNAGVCSTFAKNLKDGHM--KVQSVVAWAVSELAS 261 (654)
Q Consensus 226 ~~iv~~GaIp~Lv~LL~s~~~--~vq~~Aa~aL~nLa~ 261 (654)
..+.+ ...|+|.+++.+++. .++..++.+|+-++-
T Consensus 124 ~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~f 160 (309)
T PF05004_consen 124 EEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTF 160 (309)
T ss_pred HHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHH
Confidence 55554 478999999987653 455566666665543
No 129
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=89.55 E-value=2.5 Score=49.94 Aligned_cols=106 Identities=17% Similarity=0.067 Sum_probs=86.5
Q ss_pred hhhhHHHHcccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcchHH
Q 006250 147 ILCLIWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVE 226 (654)
Q Consensus 147 i~~~v~~lV~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~ 226 (654)
.+..+..+.+-|+++++..|..|.+.+..+=. ++.. .-.++|+.+++.++++.+++.|+-|+.+|=. -.+.
T Consensus 90 ~lLavNti~kDl~d~N~~iR~~AlR~ls~l~~--~el~-----~~~~~~ik~~l~d~~ayVRk~Aalav~kly~--ld~~ 160 (757)
T COG5096 90 ALLAVNTIQKDLQDPNEEIRGFALRTLSLLRV--KELL-----GNIIDPIKKLLTDPHAYVRKTAALAVAKLYR--LDKD 160 (757)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHhcCh--HHHH-----HHHHHHHHHHccCCcHHHHHHHHHHHHHHHh--cCHh
Confidence 34456667889999999999999999988742 2222 2368999999999999999999999998864 2355
Q ss_pred HHHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhc
Q 006250 227 QIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELAS 261 (654)
Q Consensus 227 ~iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~ 261 (654)
...+.|.+-.+..++.+.++.+..+|..+|..+-.
T Consensus 161 l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 161 LYHELGLIDILKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred hhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence 67788999999999999999999999998888765
No 130
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=89.33 E-value=4.1 Score=39.12 Aligned_cols=104 Identities=17% Similarity=0.152 Sum_probs=78.7
Q ss_pred HHHHHhcCCHHHHHHhhccCCH------HHHHHHHHHHHHhcCCcchHHHHHHcCchHHHHHhhcCC--ChhHHHHHHHH
Q 006250 184 GKLIIEEGGVPPLLKLAYEGEL------EGQENAARAIGLLGRDAESVEQIVNAGVCSTFAKNLKDG--HMKVQSVVAWA 255 (654)
Q Consensus 184 ~~~I~e~G~Ip~LV~LL~s~~~------~~q~~Aa~AL~nLa~~~e~~~~iv~~GaIp~Lv~LL~s~--~~~vq~~Aa~a 255 (654)
....+..||++.|++++++|+. +....+..|+..|-.+...-....+.-.|.-.+...+.. +..+...|...
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 4567889999999999999873 555667777777765544344455555666667777653 47888999999
Q ss_pred HHHHhcCChhhHHHHHhCCcHHHHHHhhccCc
Q 006250 256 VSELASNHPKCQDHFAQNNIVRFLVSHLAFET 287 (654)
Q Consensus 256 L~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~ 287 (654)
|-++..+++..-..+.++=-++.|+.+|+..+
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~ 115 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSN 115 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCC
Confidence 99999978777777777777999999998743
No 131
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=89.29 E-value=2.5 Score=40.51 Aligned_cols=131 Identities=18% Similarity=0.254 Sum_probs=84.1
Q ss_pred cCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhh-----
Q 006250 448 KGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRAT----- 522 (654)
Q Consensus 448 ~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~----- 522 (654)
..++++|..+..++..+- +..+. ...+.+-+.+-..+.+.+.+-...++.++..|=......
T Consensus 16 ~~~~~~r~~a~v~l~k~l-------~~~~~------~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~ 82 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLL-------DAARE------EFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELF 82 (157)
T ss_dssp TTSCCHHHHHHHHHHHHH-------HHHHH------HHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHC
T ss_pred CCCHhHHHHHHHHHHHHH-------HHhHH------HHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHH
Confidence 467789999888887762 11121 111334445556666655565555555555443322221
Q ss_pred -hhccHHHHHHHhc--cCCHHHHHHHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhcc-CCcc-hHHHHHHHHHH
Q 006250 523 -ETRIIGPLVNLLD--EREPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYF-GEQM-IQIPALTLLCY 597 (654)
Q Consensus 523 -e~~~I~pLV~lL~--~~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~-~~~~-~q~~Al~~L~~ 597 (654)
..|+++-++.+.. ..+..+...++.+|.--+ .+ +.++..+...|++.|-++++. .++. +++.|+..||-
T Consensus 83 ~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc-~d-----~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 83 LSEGFLESLLPLASRKSKDRKVQKAALELLSAAC-ID-----KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp CTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHT-TS-----HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHH-cc-----HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 2367788888887 777888888888887764 32 457777778899999999964 4555 78889888874
No 132
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=88.65 E-value=3.6 Score=45.69 Aligned_cols=111 Identities=16% Similarity=0.101 Sum_probs=81.5
Q ss_pred HHHcccccCCCHHHHHHHHHHHHHhccCCchh-------------HHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHh
Q 006250 152 WEQIAILHTGSMEEKCDAAASLVSLARDNDRY-------------GKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLL 218 (654)
Q Consensus 152 ~~lV~lL~s~~~~~k~~Aa~aL~~La~~~~~~-------------~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nL 218 (654)
-.++.+|.+ ++....||..+.-+..+.+.. |+.+. .-.+|.|++-.+..+.+.+.+-..||.+|
T Consensus 274 ~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F-~~~~p~L~~~~~~~~~~~k~~yL~ALs~l 350 (415)
T PF12460_consen 274 DKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFF-TQVLPKLLEGFKEADDEIKSNYLTALSHL 350 (415)
T ss_pred HHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHH-HHHHHHHHHHHhhcChhhHHHHHHHHHHH
Confidence 344666655 566788899998887663322 44444 34789999998888877889999999999
Q ss_pred cCCcchHHHHHH-cCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChh
Q 006250 219 GRDAESVEQIVN-AGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPK 265 (654)
Q Consensus 219 a~~~e~~~~iv~-~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~ 265 (654)
..+-...-.+-+ ...+|.|++-|..++.+++..+..+|..+..+.++
T Consensus 351 l~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~ 398 (415)
T PF12460_consen 351 LKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPE 398 (415)
T ss_pred HhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHH
Confidence 987332222222 34789999999999999999999999999885543
No 133
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=87.83 E-value=4.2 Score=42.17 Aligned_cols=93 Identities=17% Similarity=0.001 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhcc-CCHHHHHHHHHHHHHhcCC-cchHHHHHHcCchHHHHHhhc
Q 006250 165 EKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYE-GELEGQENAARAIGLLGRD-AESVEQIVNAGVCSTFAKNLK 242 (654)
Q Consensus 165 ~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s-~~~~~q~~Aa~AL~nLa~~-~e~~~~iv~~GaIp~Lv~LL~ 242 (654)
....|...|.-++--++..+....+..++..|+.+|.. ..+.+|..+..+|..+-.+ +.|.+..-+.+|+..++.+++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 34567788888876678999999999999999999954 5688999999998877654 799999999999999999998
Q ss_pred CCC--hhHHHHHHHHHH
Q 006250 243 DGH--MKVQSVVAWAVS 257 (654)
Q Consensus 243 s~~--~~vq~~Aa~aL~ 257 (654)
+.. .+++-.....|.
T Consensus 187 ~~~~~~~~r~K~~EFL~ 203 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLY 203 (257)
T ss_pred cccccHHHhHHHHHHHH
Confidence 754 345444444433
No 134
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=87.67 E-value=23 Score=43.82 Aligned_cols=103 Identities=15% Similarity=0.115 Sum_probs=68.4
Q ss_pred HHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhhhhc--cHHHHHHHhccCCHHHHHHHHHHHHhcc-ccCCCCCHHHHH
Q 006250 489 VLEQLLHIVEKADSDLLIPSIRAIGNLARTFRATETR--IIGPLVNLLDEREPEVIMEATVALNKFA-TTENYLSETHSK 565 (654)
Q Consensus 489 vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~e~~--~I~pLV~lL~~~~~~v~~eAa~AL~~~a-~~~n~~~~~~~~ 565 (654)
|-+..+.++...++-|+..-..+|+-|+..|....++ +.+.|+..|+++|...+..=-..|...+ .-|.. +
T Consensus 579 V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r-s----- 652 (1431)
T KOG1240|consen 579 VEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR-S----- 652 (1431)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee-e-----
Confidence 3344566777767788888888899999888764433 5789999999998877766555555433 11210 1
Q ss_pred HHHHCCCHHHHHHhhccCCcchHHHHHHHHHHHH
Q 006250 566 AIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIA 599 (654)
Q Consensus 566 ~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~ia 599 (654)
++.+-+|.|.+=|..+++-+.+.|+.+|..+.
T Consensus 653 --~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Li 684 (1431)
T KOG1240|consen 653 --VSEYLLPLLQQGLTDGEEAVIVSALGSLSILI 684 (1431)
T ss_pred --HHHHHHHHHHHhccCcchhhHHHHHHHHHHHH
Confidence 22333444445587788877788888887775
No 135
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=87.57 E-value=1.2 Score=50.11 Aligned_cols=130 Identities=18% Similarity=0.194 Sum_probs=87.1
Q ss_pred HHHHhhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHH-hhhcCcchhhHHHHHHHHhhhcc
Q 006250 441 CFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHI-VEKADSDLLIPSIRAIGNLARTF 519 (654)
Q Consensus 441 ~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~l-l~~~~~~l~~~~~~alg~la~~~ 519 (654)
.+-.||.+.++-++++.+.++.---+|..++ .+|..|+.+ +...+++++..++.|||-++..-
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alAy~GTgn~----------------~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D 583 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALAYVGTGNL----------------GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD 583 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHHHhcCCcc----------------hhHhhhheeecccCchHHHHHHHHheeeeEecC
Confidence 3456778888888888888765322333322 355566666 77788999999999999877432
Q ss_pred hhhhhccHHHHHHHh-ccCCHHHHHHHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhccCCcchHHHHHHHHHHH
Q 006250 520 RATETRIIGPLVNLL-DEREPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYI 598 (654)
Q Consensus 520 ~~~e~~~I~pLV~lL-~~~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~i 598 (654)
+ ..++..|++| ++-++.|+...|.||+=++.+.. .++ ++..|-.|.+....-+...|+.++.-|
T Consensus 584 ~----~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G----~~~-------a~diL~~L~~D~~dfVRQ~AmIa~~mI 648 (926)
T COG5116 584 R----DLLVGTVELLSESHNFHVRAGVAVALGIACAGTG----DKV-------ATDILEALMYDTNDFVRQSAMIAVGMI 648 (926)
T ss_pred c----chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCc----cHH-------HHHHHHHHhhCcHHHHHHHHHHHHHHH
Confidence 2 3566778888 45678899999999988764331 111 345666777765554544477777777
Q ss_pred HhC
Q 006250 599 AIK 601 (654)
Q Consensus 599 a~~ 601 (654)
-.+
T Consensus 649 l~Q 651 (926)
T COG5116 649 LMQ 651 (926)
T ss_pred Hhh
Confidence 543
No 136
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.88 E-value=64 Score=37.01 Aligned_cols=200 Identities=15% Similarity=0.117 Sum_probs=104.3
Q ss_pred hHHhhHHHHHHHHHHHHHHHhhCCcccchhcccCcccHHHHHHhhhcCh---------hhHHHHHHhcCCCCCccccccC
Q 006250 67 RIVDDTEQVLDKAMQLVVKCRANGILKRVFTIIPAAAFRKTLMQLENSL---------GDVSWLIRVSASSEENDDEYLG 137 (654)
Q Consensus 67 ~~~~~~~~~l~~a~~l~~~C~~~g~~~r~~~i~~~~~l~~l~~lL~~~~---------~dv~~lL~~s~~~~~~~~~~~~ 137 (654)
++..++.++.+.+..+..+..+.=...+.-+ =.++.++.+|..+. --+.|+-.+ . .
T Consensus 132 klsaDsd~~V~~~aeLLdRLikdIVte~~~t----FsL~~~ipLL~eriy~~n~~tR~flv~Wl~~L-d----------s 196 (675)
T KOG0212|consen 132 KLSADSDQNVRGGAELLDRLIKDIVTESAST----FSLPEFIPLLRERIYVINPMTRQFLVSWLYVL-D----------S 196 (675)
T ss_pred HHhcCCccccccHHHHHHHHHHHhccccccc----cCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH-h----------c
Confidence 4555566666666665554433222222111 13555555553221 126676332 2 2
Q ss_pred CCCccccchhhhhHHHHcccccCCCHHHHHHHHHHHHHhcc---CCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHH
Q 006250 138 LPPIAANEPILCLIWEQIAILHTGSMEEKCDAAASLVSLAR---DNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARA 214 (654)
Q Consensus 138 lp~la~~~~i~~~v~~lV~lL~s~~~~~k~~Aa~aL~~La~---~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~A 214 (654)
.|++.--.-+..+.--|..+|...++++|..+-.+|.++-. .+|..- --...++.||.-+.+..+.+|..|..=
T Consensus 197 ~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~---d~~~~i~vlv~~l~ss~~~iq~~al~W 273 (675)
T KOG0212|consen 197 VPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSM---DYDDMINVLVPHLQSSEPEIQLKALTW 273 (675)
T ss_pred CCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcccc---CcccchhhccccccCCcHHHHHHHHHH
Confidence 34442111122223335788899999999777666655432 112211 113468889999999999999998777
Q ss_pred HHHhcCCcchHHHHHHcCchHHHHHhhcCCCh-hHHHHHHHH---HHHHhcCChhhHHHHHhC-CcHHHHHHhhccC
Q 006250 215 IGLLGRDAESVEQIVNAGVCSTFAKNLKDGHM-KVQSVVAWA---VSELASNHPKCQDHFAQN-NIVRFLVSHLAFE 286 (654)
Q Consensus 215 L~nLa~~~e~~~~iv~~GaIp~Lv~LL~s~~~-~vq~~Aa~a---L~nLa~~~~~~r~~i~~~-g~I~~LV~LL~~~ 286 (654)
|.....-+...-...-.|.+..+..++.+..+ .+++.+... |..+.. .+...+. ++. ..|..|...|.++
T Consensus 274 i~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s-~~~~~~~-id~~~ii~vl~~~l~~~ 348 (675)
T KOG0212|consen 274 IQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVS-SERLKEE-IDYGSIIEVLTKYLSDD 348 (675)
T ss_pred HHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHh-hhhhccc-cchHHHHHHHHHHhhcc
Confidence 77776544433344445666666777766544 355544433 333333 2222222 222 2455566666544
No 137
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=86.26 E-value=8.4 Score=43.00 Aligned_cols=128 Identities=14% Similarity=0.114 Sum_probs=96.0
Q ss_pred cccccCCCHHHHHHHHHHHHHhccCCc---hhHHHHHhcCCHHHHHHhhccCC-----H--HHHHHHHHHHHHhcCCcch
Q 006250 155 IAILHTGSMEEKCDAAASLVSLARDND---RYGKLIIEEGGVPPLLKLAYEGE-----L--EGQENAARAIGLLGRDAES 224 (654)
Q Consensus 155 V~lL~s~~~~~k~~Aa~aL~~La~~~~---~~~~~I~e~G~Ip~LV~LL~s~~-----~--~~q~~Aa~AL~nLa~~~e~ 224 (654)
..++...+++.|..|.-....+.+.++ .+|+.|.++=|.+-|=+||.+++ + ..+.-+...|...|+.+|.
T Consensus 17 ~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pEl 96 (698)
T KOG2611|consen 17 LKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPEL 96 (698)
T ss_pred HHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhh
Confidence 455667788888888888888876543 46899999999999999997643 2 3455677778888888764
Q ss_pred --HHHHHHcCchHHHHHhhcCC-Chh------HHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhcc
Q 006250 225 --VEQIVNAGVCSTFAKNLKDG-HMK------VQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAF 285 (654)
Q Consensus 225 --~~~iv~~GaIp~Lv~LL~s~-~~~------vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~ 285 (654)
.+.|+ ..||.|..++..+ +++ +.+.+-.+|..+|+. +.....++..|+++.+-++-.-
T Consensus 97 Ash~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~-e~G~~~Lia~G~~~~~~Q~y~~ 163 (698)
T KOG2611|consen 97 ASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATA-EAGLMTLIASGGLRVIAQMYEL 163 (698)
T ss_pred ccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcC-CchhHHHHhcCchHHHHHHHhC
Confidence 34554 4699999999753 344 778888999999995 5667777888999999876543
No 138
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=84.59 E-value=46 Score=38.23 Aligned_cols=140 Identities=16% Similarity=0.156 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhhccc-----ChHhhh---------
Q 006250 411 MKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEK-----NSDLRR--------- 476 (654)
Q Consensus 411 lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~-----~~~lrr--------- 476 (654)
+.-.+||++..++..|..-+- . ...+..|-.+|+++....|.-|-..|.+|+-...+ |+++-.
T Consensus 280 V~lE~Ar~v~~~~~~nv~~~~--~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~I 356 (898)
T COG5240 280 VFLEAARAVCALSEENVGSQF--V-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTI 356 (898)
T ss_pred hhHHHHHHHHHHHHhccCHHH--H-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccc
Confidence 345688888888876522111 1 13455666778999999999999999888754332 222211
Q ss_pred ------hccCC-CchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhhhhccHHHHHHHh-ccCCHHHHHHHHHH
Q 006250 477 ------SAFKP-TSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRATETRIIGPLVNLL-DEREPEVIMEATVA 548 (654)
Q Consensus 477 ------~a~~~-~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~e~~~I~pLV~lL-~~~~~~v~~eAa~A 548 (654)
..+|+ ++...-..+.++..++..-+++.++.++.||-.|+-.|+....-++..|.+.| +++..+-++.++.|
T Consensus 357 styAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vda 436 (898)
T COG5240 357 STYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDA 436 (898)
T ss_pred hHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 01111 12222335667777777777899999999999999999987666777777765 77788888888888
Q ss_pred HHhcc
Q 006250 549 LNKFA 553 (654)
Q Consensus 549 L~~~a 553 (654)
|+...
T Consensus 437 isd~~ 441 (898)
T COG5240 437 ISDAM 441 (898)
T ss_pred HHHHH
Confidence 77654
No 139
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=84.58 E-value=4.9 Score=46.10 Aligned_cols=77 Identities=13% Similarity=0.217 Sum_probs=43.0
Q ss_pred cCcchhhHHHHHHHHhhhcchhhhhccHHHHHHHhccCCHHHHHHHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHh
Q 006250 500 ADSDLLIPSIRAIGNLARTFRATETRIIGPLVNLLDEREPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQL 579 (654)
Q Consensus 500 ~~~~l~~~~~~alg~la~~~~~~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~L 579 (654)
+++..+.-++.-|.-.-..|+..+...|..+++|..+.+..|+..|...|-.++.+. +++...|+ .-|++|
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~----~~~v~kva-----DvL~Ql 104 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN----PEHVSKVA-----DVLVQL 104 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T------T-HHHHH-----HHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH----HHHHhHHH-----HHHHHH
Confidence 345566666666666666677666667777777777777777777777777775322 34555553 356777
Q ss_pred hccCCc
Q 006250 580 VYFGEQ 585 (654)
Q Consensus 580 L~~~~~ 585 (654)
|.+.|+
T Consensus 105 L~tdd~ 110 (556)
T PF05918_consen 105 LQTDDP 110 (556)
T ss_dssp TT---H
T ss_pred HhcccH
Confidence 766553
No 140
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=84.47 E-value=5.3 Score=37.96 Aligned_cols=74 Identities=20% Similarity=0.437 Sum_probs=65.3
Q ss_pred HhHHHHHHHhHHhhhhHHhhHHHHHHHHHHHHHHHHHHhhcccccCcchhhHHhhHHHHHHHHHHHHHHHhhCCc
Q 006250 17 QLADTITKIANEAQSFKQDCQELQAKTEKLAVLLRQVARVSSVSYQRPTRRIVDDTEQVLDKAMQLVVKCRANGI 91 (654)
Q Consensus 17 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~p~~~~~~~~~~~l~~a~~l~~~C~~~g~ 91 (654)
+|.+.|+.+++.+..|+.-...+.+-++.|.-...+.-..+ +.-++|-++.+....++++++..|+.+|.+.+.
T Consensus 17 eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~-~eld~~~~ee~e~L~~~L~~g~~LV~k~sk~~r 90 (147)
T PF05659_consen 17 ELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLN-VELDRPRQEEIERLKELLEKGKELVEKCSKVRR 90 (147)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHh-hhcCCchhHHHHHHHHHHHHHHHHHHHhccccH
Confidence 56788889999999999999999999999998888877776 667788789999999999999999999987653
No 141
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.42 E-value=2.7 Score=44.35 Aligned_cols=89 Identities=15% Similarity=0.082 Sum_probs=67.3
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHhcCCcchHHHHHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhC
Q 006250 194 PPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQN 273 (654)
Q Consensus 194 p~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~~iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~ 273 (654)
--+|.+|.+.++.++..|..-+.+++..+-..-.--+.-.++.+.+|+...++ -+.|+.+|.|++. +++.|..+.+.
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq-~~~l~~~ll~~ 82 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQ-KEELRKKLLQD 82 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHh-hHHHHHHHHHH
Confidence 35788999999999999999998888761111111133467889999987766 5679999999999 78888888877
Q ss_pred CcHHHHHHhhccC
Q 006250 274 NIVRFLVSHLAFE 286 (654)
Q Consensus 274 g~I~~LV~LL~~~ 286 (654)
.+..++..+-+.
T Consensus 83 -~~k~l~~~~~~p 94 (353)
T KOG2973|consen 83 -LLKVLMDMLTDP 94 (353)
T ss_pred -HHHHHHHHhcCc
Confidence 777777777654
No 142
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=84.06 E-value=7.8 Score=41.00 Aligned_cols=101 Identities=13% Similarity=0.067 Sum_probs=75.5
Q ss_pred ccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCC--cchHH-------
Q 006250 156 AILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRD--AESVE------- 226 (654)
Q Consensus 156 ~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~--~e~~~------- 226 (654)
..+++.++.+|+.|..+|+-.+--+.+.... .++.+...++.++..++..|..+|..+... .+.-.
T Consensus 34 P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~ 108 (298)
T PF12719_consen 34 PAVQSSDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDE 108 (298)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCc
Confidence 6778999999999999999998664433222 377888888888899999999999988742 22111
Q ss_pred HHHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhc
Q 006250 227 QIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELAS 261 (654)
Q Consensus 227 ~iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~ 261 (654)
..-....+..|.+.|.+.++++|..++..++-|--
T Consensus 109 ~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL 143 (298)
T PF12719_consen 109 SVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLL 143 (298)
T ss_pred cchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 12234567778888888888888888888888755
No 143
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.85 E-value=9.8 Score=42.09 Aligned_cols=118 Identities=16% Similarity=0.187 Sum_probs=90.6
Q ss_pred HHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCC---c---c----hHHHHHHcCchHHH
Q 006250 168 DAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRD---A---E----SVEQIVNAGVCSTF 237 (654)
Q Consensus 168 ~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~---~---e----~~~~iv~~GaIp~L 237 (654)
.....+..+|.- |..--..++.++|+.|+.||.+.+.++-...+.-|..|.-. . + --.++++.+.++.|
T Consensus 103 d~IQ~mhvlAt~-PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLL 181 (536)
T KOG2734|consen 103 DIIQEMHVLATM-PDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALL 181 (536)
T ss_pred HHHHHHHhhhcC-hHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHH
Confidence 345566777765 77777788999999999999999998888888888888742 1 2 24578899999999
Q ss_pred HHhhcCCChhHH------HHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccC
Q 006250 238 AKNLKDGHMKVQ------SVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFE 286 (654)
Q Consensus 238 v~LL~s~~~~vq------~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~ 286 (654)
|+-+..-++.++ ..+...+-|+..-.++....+++.|.+..|+.-+...
T Consensus 182 vqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k 236 (536)
T KOG2734|consen 182 VQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGK 236 (536)
T ss_pred HHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcc
Confidence 998864444333 4556677888888888889999999999988855543
No 144
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=83.57 E-value=68 Score=34.45 Aligned_cols=102 Identities=14% Similarity=0.153 Sum_probs=68.4
Q ss_pred HHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcc-----hHHHHHHcCchHHHHHhh
Q 006250 167 CDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAE-----SVEQIVNAGVCSTFAKNL 241 (654)
Q Consensus 167 ~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e-----~~~~iv~~GaIp~Lv~LL 241 (654)
.-...+|-.|-+..+ .. .+ --...|.|-.=|..++..++.-++..++.|..+.+ ....++++|..|.++..+
T Consensus 61 tlcVscLERLfkake-ga-hl-apnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcI 137 (524)
T KOG4413|consen 61 TLCVSCLERLFKAKE-GA-HL-APNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCI 137 (524)
T ss_pred hhHHHHHHHHHhhcc-ch-hh-chhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHH
Confidence 345666766643311 00 01 01233444444566778888888888888876532 234567899999999999
Q ss_pred cCCChhHHHHHHHHHHHHhcCChhhHHHHHh
Q 006250 242 KDGHMKVQSVVAWAVSELASNHPKCQDHFAQ 272 (654)
Q Consensus 242 ~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~ 272 (654)
...+.+|-..|...|..|+. .|..-+.+.+
T Consensus 138 ggeddeVAkAAiesikrial-fpaaleaiFe 167 (524)
T KOG4413|consen 138 GGEDDEVAKAAIESIKRIAL-FPAALEAIFE 167 (524)
T ss_pred cCCcHHHHHHHHHHHHHHHh-cHHHHHHhcc
Confidence 99999999999999999998 6665444443
No 145
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=81.41 E-value=68 Score=34.41 Aligned_cols=129 Identities=16% Similarity=0.036 Sum_probs=93.3
Q ss_pred cccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcC-CHHHHHHhhcc--CCHHHHHHHHHHHHHhcCCcchHHHHHH-cC
Q 006250 157 ILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEG-GVPPLLKLAYE--GELEGQENAARAIGLLGRDAESVEQIVN-AG 232 (654)
Q Consensus 157 lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G-~Ip~LV~LL~s--~~~~~q~~Aa~AL~nLa~~~e~~~~iv~-~G 232 (654)
+++.=++-.+..|..+|.+++.. ++.|+.+.-+. .-..++.+++. |+..+|.++.-.+|-++..++..+-|-. ..
T Consensus 157 l~Q~i~~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~d 235 (432)
T COG5231 157 LSQLIDFLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDD 235 (432)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34444566788899999999976 78888887665 45678888875 4578999999999999998877644432 23
Q ss_pred chHHHHHhhcCC-ChhHHHHHHHHHHHHhcCC-hhhHHHHHhCCcHHHHHHhhccC
Q 006250 233 VCSTFAKNLKDG-HMKVQSVVAWAVSELASNH-PKCQDHFAQNNIVRFLVSHLAFE 286 (654)
Q Consensus 233 aIp~Lv~LL~s~-~~~vq~~Aa~aL~nLa~~~-~~~r~~i~~~g~I~~LV~LL~~~ 286 (654)
-|--|+++.++. .+.|-..++..+.|+.... .+......-.|-+.+-|++|..+
T Consensus 236 li~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~er 291 (432)
T COG5231 236 LINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLER 291 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhc
Confidence 567778888764 4678888999999998632 23334444456677778888655
No 146
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=81.38 E-value=29 Score=37.03 Aligned_cols=131 Identities=21% Similarity=0.229 Sum_probs=75.6
Q ss_pred HHHHHHHHHh--hcCChHHHHHHHhhCcHHHHHHhhccCChh--HHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHH
Q 006250 413 AMAARALWKL--SKGNLSICRNLTESRALLCFAVLLEKGPED--VKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKA 488 (654)
Q Consensus 413 ~~Aa~AL~~L--a~gn~~~~~~i~e~gaL~~L~~LL~~~~~~--v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~ 488 (654)
.-|+++++-+ .-|.......+.+ ...|.|.+.+.++... ++..++.||.=++-....+++--.. .-.
T Consensus 104 ~lA~~~l~Ll~ltlg~g~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~--------~~~ 174 (309)
T PF05004_consen 104 ALAARALALLALTLGAGEDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEE--------LME 174 (309)
T ss_pred HHHHHHHHHHhhhcCCCccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHH--------HHH
Confidence 4455555544 3343334444444 5777888888887654 4456666776555443333221100 001
Q ss_pred HHHHHHHH--hhh---------c-CcchhhHHHHHHHHhhhcchhh-----hhccHHHHHHHhccCCHHHHHHHHHHHHh
Q 006250 489 VLEQLLHI--VEK---------A-DSDLLIPSIRAIGNLARTFRAT-----ETRIIGPLVNLLDEREPEVIMEATVALNK 551 (654)
Q Consensus 489 vv~~L~~l--l~~---------~-~~~l~~~~~~alg~la~~~~~~-----e~~~I~pLV~lL~~~~~~v~~eAa~AL~~ 551 (654)
..+-+..+ ++. . ++.+...++.+-|-|.++.... -...+|.|+.+|++.+.+|+..|..+|+=
T Consensus 175 ~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAl 254 (309)
T PF05004_consen 175 SLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIAL 254 (309)
T ss_pred HHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 12211111 111 1 2347778888877777655541 12468999999999999999999998875
Q ss_pred c
Q 006250 552 F 552 (654)
Q Consensus 552 ~ 552 (654)
+
T Consensus 255 l 255 (309)
T PF05004_consen 255 L 255 (309)
T ss_pred H
Confidence 5
No 147
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=81.28 E-value=5.1 Score=46.78 Aligned_cols=128 Identities=21% Similarity=0.220 Sum_probs=75.1
Q ss_pred HHHhhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHH-hhhcCcchhhHHHHHHHHhhhcch
Q 006250 442 FAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHI-VEKADSDLLIPSIRAIGNLARTFR 520 (654)
Q Consensus 442 L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~l-l~~~~~~l~~~~~~alg~la~~~~ 520 (654)
+-.|+.+.++-+|+....++.-==.++.+| .+|.+|+.+ +...+++|+..|+.|||-+.. +
T Consensus 524 I~el~~dkdpilR~~Gm~t~alAy~GTgnn----------------kair~lLh~aVsD~nDDVrRaAVialGFVl~--~ 585 (929)
T KOG2062|consen 524 IKELLRDKDPILRYGGMYTLALAYVGTGNN----------------KAIRRLLHVAVSDVNDDVRRAAVIALGFVLF--R 585 (929)
T ss_pred HHHHhcCCchhhhhhhHHHHHHHHhccCch----------------hhHHHhhcccccccchHHHHHHHHHheeeEe--c
Confidence 345556666666666555543111222222 244556666 677789999999999997763 3
Q ss_pred hhhhccHHHHHHHhc-cCCHHHHHHHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhccCCcchHHHHHHHHHHHH
Q 006250 521 ATETRIIGPLVNLLD-EREPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIA 599 (654)
Q Consensus 521 ~~e~~~I~pLV~lL~-~~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~ia 599 (654)
.. ...|..|.+|+ +-++.|+.-||.||+=++.+.. ... +|..|--|.+....-+...|+.++.-|-
T Consensus 586 dp--~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG-----~~e------Ai~lLepl~~D~~~fVRQgAlIa~amIm 652 (929)
T KOG2062|consen 586 DP--EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTG-----LKE------AINLLEPLTSDPVDFVRQGALIALAMIM 652 (929)
T ss_pred Ch--hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCC-----cHH------HHHHHhhhhcChHHHHHHHHHHHHHHHH
Confidence 32 25677888885 4578899999999988763321 111 2233333443222224444777777664
Q ss_pred h
Q 006250 600 I 600 (654)
Q Consensus 600 ~ 600 (654)
.
T Consensus 653 ~ 653 (929)
T KOG2062|consen 653 I 653 (929)
T ss_pred H
Confidence 3
No 148
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.62 E-value=11 Score=42.09 Aligned_cols=139 Identities=21% Similarity=0.257 Sum_probs=93.3
Q ss_pred CChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCC
Q 006250 403 EDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPT 482 (654)
Q Consensus 403 ~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~ 482 (654)
.||. ++.+.+|++.|++.+.|-++-++.-...-....+-.|.+.-+.+|+-++..+|--+.-..+ +-+++. .|
T Consensus 268 ~dp~--a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~-~~~l~~-~~--- 340 (533)
T KOG2032|consen 268 TDPS--AKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKAS-NDDLES-YL--- 340 (533)
T ss_pred cCch--hHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhh-hcchhh-hc---
Confidence 3554 4688999999999999977777654333222333455666778999999988877664433 223332 12
Q ss_pred chHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhc--------chhhhhccHHHHHHHhccCCHHHHHHHHHHHHhcc
Q 006250 483 STAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLART--------FRATETRIIGPLVNLLDEREPEVIMEATVALNKFA 553 (654)
Q Consensus 483 s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~--------~~~~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a 553 (654)
..+..++..+.++++++++..+....|.|+.- |...-.+...||+-.|.+.+++|.+ |+.+...++
T Consensus 341 ----l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~-ACr~~~~~c 414 (533)
T KOG2032|consen 341 ----LNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVAR-ACRSELRTC 414 (533)
T ss_pred ----hhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHH-HHHHHHHhc
Confidence 33567899999999999999999999999862 2211112334666667888887654 555555553
No 149
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=80.59 E-value=36 Score=40.35 Aligned_cols=202 Identities=19% Similarity=0.169 Sum_probs=125.6
Q ss_pred chhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHH-HhcCCcchHHHHHHcCchHHHHHhhcCCChhHH-HHHHHHHHH
Q 006250 181 DRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIG-LLGRDAESVEQIVNAGVCSTFAKNLKDGHMKVQ-SVVAWAVSE 258 (654)
Q Consensus 181 ~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~-nLa~~~e~~~~iv~~GaIp~Lv~LL~s~~~~vq-~~Aa~aL~n 258 (654)
..-+..+++.|+...|+++....++..+..+..||. .+.. +.++. ...++++-..++....... -.+..++.|
T Consensus 494 K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f-~~~~~----~~v~~~~~s~~~~d~~~~en~E~L~altn 568 (748)
T KOG4151|consen 494 KYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDF-PGERS----YEVVKPLDSALHNDEKGLENFEALEALTN 568 (748)
T ss_pred HHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCC-CCCch----hhhhhhhcchhhhhHHHHHHHHHHHHhhc
Confidence 334667788999999999999999999988888887 3322 21211 2245666666654332221 357778888
Q ss_pred HhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHHHHhhcCCCCCCCCCCCCCCCCCCCcccccC
Q 006250 259 LASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVASNSQNPKDHRTAPPQQQGNGNISKVSC 338 (654)
Q Consensus 259 La~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 338 (654)
|++.+...|+.+.++-+++.+=.++..
T Consensus 569 Las~s~s~r~~i~ke~~~~~ie~~~~e----------------------------------------------------- 595 (748)
T KOG4151|consen 569 LASISESDRQKILKEKALGKIEELMTE----------------------------------------------------- 595 (748)
T ss_pred ccCcchhhHHHHHHHhcchhhHHHhhc-----------------------------------------------------
Confidence 888777777766654443331111110
Q ss_pred CCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHH
Q 006250 339 PMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARA 418 (654)
Q Consensus 339 ~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~A 418 (654)
+.| .+++.++..
T Consensus 596 ----------------------------------------------------------------e~~----~lqraa~e~ 607 (748)
T KOG4151|consen 596 ----------------------------------------------------------------ENP----ALQRAALES 607 (748)
T ss_pred ----------------------------------------------------------------ccH----HHHHHHHHH
Confidence 011 356777777
Q ss_pred HHHhhcCChHHHHHHHh-hCcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHh
Q 006250 419 LWKLSKGNLSICRNLTE-SRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIV 497 (654)
Q Consensus 419 L~~La~gn~~~~~~i~e-~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll 497 (654)
+.||..|..-.-+.|.+ .-.++....+++..++.....+|.++--|+...++.-.. .-....--+.+++++
T Consensus 608 ~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~I~sv~~n~c~~--------~~~~~~~~e~~~~~i 679 (748)
T KOG4151|consen 608 IINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAGALAAITSVVENHCSR--------ILELLEWLEILVRAI 679 (748)
T ss_pred HHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhccccccchhhcchhhhhh--------HHHhhcchHHHHHhh
Confidence 77777777777777777 456776677777767777777787777677665543110 001112235677888
Q ss_pred hhcCcchhhHHHHHHHHhh
Q 006250 498 EKADSDLLIPSIRAIGNLA 516 (654)
Q Consensus 498 ~~~~~~l~~~~~~alg~la 516 (654)
.+++++.|-....-+-++.
T Consensus 680 ~~~~~~~qhrgl~~~ln~~ 698 (748)
T KOG4151|consen 680 QDEDDEIQHRGLVIILNLF 698 (748)
T ss_pred cCchhhhhhhhhhhhhhHH
Confidence 8888888876666655544
No 150
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=80.57 E-value=6.3 Score=32.85 Aligned_cols=66 Identities=18% Similarity=0.144 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCC-HHHHHHHHHHHHHhcCCcchHHHHHHcC
Q 006250 166 KCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGE-LEGQENAARAIGLLGRDAESVEQIVNAG 232 (654)
Q Consensus 166 k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~-~~~q~~Aa~AL~nLa~~~e~~~~iv~~G 232 (654)
...|.|++++++.. +.-...+-+.+.|+.++++.++.+ ..++--+-.+|+-+++..+..+.+.+.|
T Consensus 4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 35688999999865 556666667899999999988655 7788889999999999888877776655
No 151
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=79.49 E-value=93 Score=38.89 Aligned_cols=97 Identities=19% Similarity=0.142 Sum_probs=71.7
Q ss_pred CHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCC----cchHHHHHHcCchHHH
Q 006250 162 SMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRD----AESVEQIVNAGVCSTF 237 (654)
Q Consensus 162 ~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~----~e~~~~iv~~GaIp~L 237 (654)
..+.|.+|...|..++...+ +.+.=.-++|.+|.|+.....++|..|..+|..+-.. +..-..|.-+=.+|.|
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~---de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L 512 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYID---DEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHL 512 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcc---hHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhh
Confidence 45778999999999985422 2222245799999999999999999999999876543 3333445556678999
Q ss_pred HHhhcC-CChhHHHHHHHHHHHHhc
Q 006250 238 AKNLKD-GHMKVQSVVAWAVSELAS 261 (654)
Q Consensus 238 v~LL~s-~~~~vq~~Aa~aL~nLa~ 261 (654)
-+++.+ ....++..=|..|+.||.
T Consensus 513 ~~l~~d~~~~~vRiayAsnla~LA~ 537 (1431)
T KOG1240|consen 513 NHLLNDSSAQIVRIAYASNLAQLAK 537 (1431)
T ss_pred HhhhccCccceehhhHHhhHHHHHH
Confidence 999987 455677777777888876
No 152
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=79.29 E-value=7.7 Score=44.55 Aligned_cols=87 Identities=18% Similarity=0.305 Sum_probs=55.2
Q ss_pred CChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhhhhccHH
Q 006250 449 GPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRATETRIIG 528 (654)
Q Consensus 449 ~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~e~~~I~ 528 (654)
++...|.-||.-|... -.+=|+++. ..++.+++|.+++|..++..+++.|..+++.-...-.+++.
T Consensus 34 g~~k~K~Laaq~I~kf---fk~FP~l~~-----------~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaD 99 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKF---FKHFPDLQE-----------EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVAD 99 (556)
T ss_dssp S-HHHHHHHHHHHHHH---HCC-GGGHH-----------HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHH
T ss_pred CCHHHHHHHHHHHHHH---HhhChhhHH-----------HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHH
Confidence 5667777777765443 344455554 46788999999999999999999999999865444457888
Q ss_pred HHHHHhccCCHHHHHHHHHHH
Q 006250 529 PLVNLLDEREPEVIMEATVAL 549 (654)
Q Consensus 529 pLV~lL~~~~~~v~~eAa~AL 549 (654)
.|+.||.+.++.....+-.+|
T Consensus 100 vL~QlL~tdd~~E~~~v~~sL 120 (556)
T PF05918_consen 100 VLVQLLQTDDPVELDAVKNSL 120 (556)
T ss_dssp HHHHHTT---HHHHHHHHHHH
T ss_pred HHHHHHhcccHHHHHHHHHHH
Confidence 999999877765444444444
No 153
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.89 E-value=1.5e+02 Score=35.36 Aligned_cols=72 Identities=18% Similarity=0.189 Sum_probs=50.2
Q ss_pred cCCHHHHHHh----hccCCHHHHHHHHHHHHHhcCCcchHHHHHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChh
Q 006250 190 EGGVPPLLKL----AYEGELEGQENAARAIGLLGRDAESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPK 265 (654)
Q Consensus 190 ~G~Ip~LV~L----L~s~~~~~q~~Aa~AL~nLa~~~e~~~~iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~ 265 (654)
..+..++..+ |++....+..+||.++.++..-. -+.+.. ++..|--+|+++...+|-.|..+|..+|.-.|.
T Consensus 240 ~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~--~r~l~p--avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~ 315 (865)
T KOG1078|consen 240 QQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTN--SRELAP--AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQ 315 (865)
T ss_pred ccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccC--Hhhcch--HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCc
Confidence 3444454444 55666788889999999887531 111211 777787888888888999999999999885553
No 154
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=77.64 E-value=16 Score=41.52 Aligned_cols=137 Identities=18% Similarity=0.183 Sum_probs=96.1
Q ss_pred hHHHHcccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCH----HHHHHHHHHHHHhcCCcchH
Q 006250 150 LIWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGEL----EGQENAARAIGLLGRDAESV 225 (654)
Q Consensus 150 ~v~~lV~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~----~~q~~Aa~AL~nLa~~~e~~ 225 (654)
++.++..++.+|+...|..|...|.+++.+ ......++...|+..|.++..+|+. ++......|+..+-.+.-..
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvs 162 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSLD-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVS 162 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhcccc-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceee
Confidence 345567889999999999999999999976 7888999999999999999998874 44555555655544321111
Q ss_pred HHHHHcCchHHHHHhhc--CCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCc
Q 006250 226 EQIVNAGVCSTFAKNLK--DGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFET 287 (654)
Q Consensus 226 ~~iv~~GaIp~Lv~LL~--s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~ 287 (654)
...+....|-..+.+.+ -.+..+-..|...|-++..+++..++.+.++--+..|+.+|....
T Consensus 163 W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n 226 (713)
T KOG2999|consen 163 WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSN 226 (713)
T ss_pred eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcc
Confidence 11111112222222222 223456667888888888878888999999989999999998654
No 155
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=77.59 E-value=33 Score=35.38 Aligned_cols=111 Identities=13% Similarity=0.083 Sum_probs=81.5
Q ss_pred CCHHHHHHHHHHHHHhccCCc-hhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcchHHHHH--------Hc
Q 006250 161 GSMEEKCDAAASLVSLARDND-RYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIV--------NA 231 (654)
Q Consensus 161 ~~~~~k~~Aa~aL~~La~~~~-~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~~iv--------~~ 231 (654)
..+-.|..+...++.|.+.++ +........+.||..++.++.|+...|.-|+..+..|-.++..-..+- -.
T Consensus 137 ~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~ 216 (293)
T KOG3036|consen 137 PFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVA 216 (293)
T ss_pred chHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHH
Confidence 345678889999999987654 446777788999999999999999999999999998887754322111 01
Q ss_pred CchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHh
Q 006250 232 GVCST-FAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQ 272 (654)
Q Consensus 232 GaIp~-Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~ 272 (654)
-.+.. +.++.+.++..+-..+..+..+|+. +|..|.++..
T Consensus 217 ~~L~kmv~~l~~~ps~RllKhviRcYlrLsd-nprar~aL~~ 257 (293)
T KOG3036|consen 217 LVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD-NPRARAALRS 257 (293)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC-CHHHHHHHHh
Confidence 11222 2334456788888999999999998 7877777654
No 156
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=77.47 E-value=1.5e+02 Score=34.41 Aligned_cols=110 Identities=19% Similarity=0.250 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHh----hccCCHHHHHHHHHHHHHhcCCc--chHHHHHHcCchHHHH
Q 006250 165 EKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKL----AYEGELEGQENAARAIGLLGRDA--ESVEQIVNAGVCSTFA 238 (654)
Q Consensus 165 ~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~L----L~s~~~~~q~~Aa~AL~nLa~~~--e~~~~iv~~GaIp~Lv 238 (654)
.-..|..+|--.+.. ..+.|.+ |.+.+ +++++-.-++.|+-|++.+-.++ .....++ ..++|.+.
T Consensus 344 ~smaA~sCLqlfaq~---~gd~i~~-----pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V-~qalp~i~ 414 (858)
T COG5215 344 PSMAASSCLQLFAQL---KGDKIMR-----PVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIV-PQALPGIE 414 (858)
T ss_pred hhhhHHHHHHHHHHH---hhhHhHH-----HHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhH-HhhhHHHH
Confidence 445566666666632 3334433 33444 45566667888999999888775 3344444 56899999
Q ss_pred HhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccC
Q 006250 239 KNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFE 286 (654)
Q Consensus 239 ~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~ 286 (654)
.++.++...++..++|+++.|+.+-+ +.|-.+|-+++.|.-+.-|
T Consensus 415 n~m~D~~l~vk~ttAwc~g~iad~va---~~i~p~~Hl~~~vsa~liG 459 (858)
T COG5215 415 NEMSDSCLWVKSTTAWCFGAIADHVA---MIISPCGHLVLEVSASLIG 459 (858)
T ss_pred HhcccceeehhhHHHHHHHHHHHHHH---HhcCccccccHHHHHHHhh
Confidence 99998888999999999999998533 3444466666666544333
No 157
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=75.23 E-value=31 Score=41.13 Aligned_cols=150 Identities=17% Similarity=0.226 Sum_probs=100.5
Q ss_pred HHHHhhcCChHHHHHHHhhCcHHHHHHhhccC-ChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHH--HHH
Q 006250 418 ALWKLSKGNLSICRNLTESRALLCFAVLLEKG-PEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLE--QLL 494 (654)
Q Consensus 418 AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~-~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~--~L~ 494 (654)
+||++...++++|+.+.+.|+...|...++.- ..+++.++-.-+.+++-..+.++.+-- +.-++ -+.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~----------~~~~~~~~f~ 563 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMI----------FEFIDFSVFK 563 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhH----------HHHHHHHHHH
Confidence 99999999999999999999999999999864 468999999999999876655432211 01111 122
Q ss_pred HHhhhcCc-chhhHHHHHHHHhhhc--------chh---------------hh-----hccHHH-HHHHhc-cCCHHHHH
Q 006250 495 HIVEKADS-DLLIPSIRAIGNLART--------FRA---------------TE-----TRIIGP-LVNLLD-EREPEVIM 543 (654)
Q Consensus 495 ~ll~~~~~-~l~~~~~~alg~la~~--------~~~---------------~e-----~~~I~p-LV~lL~-~~~~~v~~ 543 (654)
.++.+++. +.-+.++.-++.+... |++ .+ .+.+.| +-+++. +..+....
T Consensus 564 ~~~~~w~~~ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~l 643 (699)
T KOG3665|consen 564 VLLNKWDSIERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQL 643 (699)
T ss_pred HHHhhcchhhHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHH
Confidence 24444444 5545555444444432 111 00 122455 666664 44566788
Q ss_pred HHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhc
Q 006250 544 EATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVY 581 (654)
Q Consensus 544 eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~ 581 (654)
-|.|++.++... .+++++.+.+.||+..+.++-.
T Consensus 644 Wal~ti~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 677 (699)
T KOG3665|consen 644 WALWTIKNVLEQ----NKEYCKLVRESNGFELIENIRV 677 (699)
T ss_pred HHHHHHHHHHHc----ChhhhhhhHhccchhhhhhcch
Confidence 899999999743 3568999999999988888644
No 158
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=72.74 E-value=12 Score=37.25 Aligned_cols=65 Identities=15% Similarity=0.094 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhccCCchhHHHHHhc--CC--HHHHHHhhccCCHHHHHHHHHHHHHhcCCcchHHHHHHc
Q 006250 166 KCDAAASLVSLARDNDRYGKLIIEE--GG--VPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIVNA 231 (654)
Q Consensus 166 k~~Aa~aL~~La~~~~~~~~~I~e~--G~--Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~~iv~~ 231 (654)
-..-+..|.|+++. ++.|+.+.+. +. |..|+-+.++.+..-+..++.+|.|+|.+.+....+...
T Consensus 75 ~~yla~vl~NlS~~-~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~ 143 (192)
T PF04063_consen 75 YDYLASVLANLSQL-PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSD 143 (192)
T ss_pred hhHHHHHHHHhcCC-HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCc
Confidence 35678999999987 8899999865 34 677777788887777889999999999998777777653
No 159
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=72.04 E-value=21 Score=37.69 Aligned_cols=115 Identities=15% Similarity=0.193 Sum_probs=76.1
Q ss_pred HHHHHHH-HHhhhcCcchhhHHHHHHHHhhhcchhhhhccHHHHHHHhccCCHHHHHHHHHHHHhccc--cCCCCCHHHH
Q 006250 488 AVLEQLL-HIVEKADSDLLIPSIRAIGNLARTFRATETRIIGPLVNLLDEREPEVIMEATVALNKFAT--TENYLSETHS 564 (654)
Q Consensus 488 ~vv~~L~-~ll~~~~~~l~~~~~~alg~la~~~~~~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a~--~~n~~~~~~~ 564 (654)
...+.|+ .-+++.++.++..+.+.+|-++-.-.......++.+.+.++.++..|+..|..+|.-+.. |.........
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~ 105 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESD 105 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhc
Confidence 3344333 667888899999999999988865444434568888899988899999999999977651 1111110000
Q ss_pred --HHHHHCCCHHHHHHhhccCCcchHHHHHHHHHHHHhCC
Q 006250 565 --KAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIAIKQ 602 (654)
Q Consensus 565 --~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~ia~~~ 602 (654)
...-...-++.+...+.+.++.+|..|+..+|.+-++.
T Consensus 106 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~ 145 (298)
T PF12719_consen 106 NDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSG 145 (298)
T ss_pred cCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence 00111233456666677777778999999999986543
No 160
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=71.99 E-value=29 Score=41.00 Aligned_cols=123 Identities=20% Similarity=0.110 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcc-hHHHHHH-cCchHHHHHhhc
Q 006250 165 EKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAE-SVEQIVN-AGVCSTFAKNLK 242 (654)
Q Consensus 165 ~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e-~~~~iv~-~GaIp~Lv~LL~ 242 (654)
....+..++.||+..++.-|..|.++-+++-+=.++...++..|..++..+.||..++. ..+.+++ ...+|.....+.
T Consensus 558 en~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e 637 (748)
T KOG4151|consen 558 ENFEALEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLE 637 (748)
T ss_pred HHHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHH
Confidence 34678999999998888888889988788776667777889999999999999998864 5666777 568888888888
Q ss_pred CCChhHHHHHHHHHHHHhcCChhhHHH-HHhCCcHHHHHHhhccCc
Q 006250 243 DGHMKVQSVVAWAVSELASNHPKCQDH-FAQNNIVRFLVSHLAFET 287 (654)
Q Consensus 243 s~~~~vq~~Aa~aL~nLa~~~~~~r~~-i~~~g~I~~LV~LL~~~~ 287 (654)
..++.....++.++.-|+..+..+... ..-......++.++.++.
T Consensus 638 ~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~ 683 (748)
T KOG4151|consen 638 VADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDED 683 (748)
T ss_pred hhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCch
Confidence 777777788888888777655555442 222456667777776653
No 161
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=71.86 E-value=8.5 Score=42.96 Aligned_cols=143 Identities=17% Similarity=0.217 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHhhc----CChH---HHHHHHhhC--cHHHHHHhhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCC
Q 006250 411 MKAMAARALWKLSK----GNLS---ICRNLTESR--ALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKP 481 (654)
Q Consensus 411 lk~~Aa~AL~~La~----gn~~---~~~~i~e~g--aL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~ 481 (654)
.++.|++++++|.. |.+. .+.++.-.. .+..++.+-.-.+..|+.|+..+|.|+...-. .+.+.+|..
T Consensus 449 ~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq---~i~~~~~~e 525 (728)
T KOG4535|consen 449 VRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQ---PIEKPTFAE 525 (728)
T ss_pred HHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHH---HhhhccHHH
Confidence 46779999999875 2211 222222111 11122222223456899999999998763321 122221211
Q ss_pred CchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhc--chhhhh----ccHHHHHHHh-ccCCHHHHHHHHHHHHhccc
Q 006250 482 TSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLART--FRATET----RIIGPLVNLL-DEREPEVIMEATVALNKFAT 554 (654)
Q Consensus 482 ~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~--~~~~e~----~~I~pLV~lL-~~~~~~v~~eAa~AL~~~a~ 554 (654)
.-. ......+..+.....-.++-.+|.++|||-.. |+-..+ -..+.|..|+ +..++.|+..||.||.--+.
T Consensus 526 ~~~--~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 526 IIE--ESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGK 603 (728)
T ss_pred HHH--HHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence 100 11111223333444567899999999999863 322112 2456676766 78899999999999987765
Q ss_pred cCCC
Q 006250 555 TENY 558 (654)
Q Consensus 555 ~~n~ 558 (654)
.+.|
T Consensus 604 re~~ 607 (728)
T KOG4535|consen 604 REQY 607 (728)
T ss_pred cccc
Confidence 5443
No 162
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.66 E-value=31 Score=39.41 Aligned_cols=85 Identities=22% Similarity=0.178 Sum_probs=66.3
Q ss_pred CHHHHHHhhccCCHHHHHHHHHHHHHhcCCcchHHHHHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHH
Q 006250 192 GVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFA 271 (654)
Q Consensus 192 ~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~~iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~ 271 (654)
.|..|-+.|++...+.+..+..=+..|-....+.-.+......+.|.+-|++.+.+|...+...++++|. +++..
T Consensus 337 ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~-s~~~~---- 411 (675)
T KOG0212|consen 337 IIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICS-SSNSP---- 411 (675)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhc-Ccccc----
Confidence 4677788888888888888877777776666677777778899999999999999999999999999998 44443
Q ss_pred hCCcHHHHHHhh
Q 006250 272 QNNIVRFLVSHL 283 (654)
Q Consensus 272 ~~g~I~~LV~LL 283 (654)
|-++.+..||
T Consensus 412 --~~~~fl~sLL 421 (675)
T KOG0212|consen 412 --NLRKFLLSLL 421 (675)
T ss_pred --cHHHHHHHHH
Confidence 3355555555
No 163
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.43 E-value=2.4e+02 Score=33.75 Aligned_cols=103 Identities=14% Similarity=0.186 Sum_probs=65.3
Q ss_pred hCcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcC-cchhhHHHHHHHH
Q 006250 436 SRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKAD-SDLLIPSIRAIGN 514 (654)
Q Consensus 436 ~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~-~~l~~~~~~alg~ 514 (654)
.+-+.|+..||.+.+..|.++||++|-.++. +|.. .|+..+.+++++.+.+ -.++....--|..
T Consensus 242 ~~~i~~i~~lL~stssaV~fEaa~tlv~lS~----~p~a-----------lk~Aa~~~i~l~~kesdnnvklIvldrl~~ 306 (948)
T KOG1058|consen 242 ARYIRCIYNLLSSTSSAVIFEAAGTLVTLSN----DPTA-----------LKAAASTYIDLLVKESDNNVKLIVLDRLSE 306 (948)
T ss_pred hHHHHHHHHHHhcCCchhhhhhcceEEEccC----CHHH-----------HHHHHHHHHHHHHhccCcchhhhhHHHHHH
Confidence 4678899999999999999999999977653 3322 2445566666665544 3455544444444
Q ss_pred hhhcchhhhhccHHHHHHHhccCCHHHHHHHHHHHHhcc
Q 006250 515 LARTFRATETRIIGPLVNLLDEREPEVIMEATVALNKFA 553 (654)
Q Consensus 515 la~~~~~~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a 553 (654)
+.......-.+.|--++++|+..+.+|++-+---.-.+.
T Consensus 307 l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLv 345 (948)
T KOG1058|consen 307 LKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLV 345 (948)
T ss_pred HhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhh
Confidence 442221111234556678888899888887654444444
No 164
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=69.75 E-value=39 Score=35.18 Aligned_cols=126 Identities=13% Similarity=0.135 Sum_probs=88.9
Q ss_pred CHHHHHHHHHHHHHhccCCchhHHHHHhc-CCHHHHHHh-------hccCC--H---HHHHHHHHHHHHhcCCcchHHHH
Q 006250 162 SMEEKCDAAASLVSLARDNDRYGKLIIEE-GGVPPLLKL-------AYEGE--L---EGQENAARAIGLLGRDAESVEQI 228 (654)
Q Consensus 162 ~~~~k~~Aa~aL~~La~~~~~~~~~I~e~-G~Ip~LV~L-------L~s~~--~---~~q~~Aa~AL~nLa~~~e~~~~i 228 (654)
+++.|++|...|..--...++..-.+... |.+..|++= |..++ . .--.+|..-|..++++++.|...
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 67789988888887654445666677766 667666553 23222 1 22346777777899999999999
Q ss_pred HHcCchHHHHHhhcCCC-----hhHHHHHHHHHHHHhc-CChhhHHHHHhCCcHHHHHHhhccCc
Q 006250 229 VNAGVCSTFAKNLKDGH-----MKVQSVVAWAVSELAS-NHPKCQDHFAQNNIVRFLVSHLAFET 287 (654)
Q Consensus 229 v~~GaIp~Lv~LL~s~~-----~~vq~~Aa~aL~nLa~-~~~~~r~~i~~~g~I~~LV~LL~~~~ 287 (654)
+++...-.|--+|+..+ +.+|-.+.+.++.|.. ++++....+.+.++||..+..+..|+
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~Gs 152 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGS 152 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhcc
Confidence 99988766667775432 5688889999999987 46677778888999999999999885
No 165
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.28 E-value=24 Score=41.62 Aligned_cols=118 Identities=21% Similarity=0.229 Sum_probs=67.1
Q ss_pred cHHHHHHhhccCChhHHHHHHHHHHHHHhhcccC----hHhhhhccC-CCchHHHH-------------HHHHHHHHh--
Q 006250 438 ALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKN----SDLRRSAFK-PTSTAAKA-------------VLEQLLHIV-- 497 (654)
Q Consensus 438 aL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~----~~lrr~a~~-~~s~~~~~-------------vv~~L~~ll-- 497 (654)
-.|..-..|++...-||+||..|++.|=...++- |++-...+. ...|.||. .++.|...+
T Consensus 135 l~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idq 214 (948)
T KOG1058|consen 135 LMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQ 214 (948)
T ss_pred hHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHHhhHhh
Confidence 3444455567777788888888887776553331 222221111 11122222 222222222
Q ss_pred -hhcCcchhhHHHHHHHHhhhcchhhhhccHHHHHHHhccCCHHHHHHHHHHHHhcccc
Q 006250 498 -EKADSDLLIPSIRAIGNLARTFRATETRIIGPLVNLLDEREPEVIMEATVALNKFATT 555 (654)
Q Consensus 498 -~~~~~~l~~~~~~alg~la~~~~~~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a~~ 555 (654)
.+.++.++...+.-|-..+-.-++.+.+.|..+..+|.+.+..|..||+.+|.++...
T Consensus 215 i~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~ 273 (948)
T KOG1058|consen 215 IPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSND 273 (948)
T ss_pred ccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCC
Confidence 2223444444444444444333444567899999999999999999999999988644
No 166
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=69.26 E-value=7.9 Score=37.02 Aligned_cols=99 Identities=20% Similarity=0.173 Sum_probs=66.9
Q ss_pred ccCCCHHHHHHHHHHHHHhccCCchhHHHHH-hcCCHHHHHHhhc--cCCHHHHHHHHHHHHHhcCCcchHHHHHHcCch
Q 006250 158 LHTGSMEEKCDAAASLVSLARDNDRYGKLII-EEGGVPPLLKLAY--EGELEGQENAARAIGLLGRDAESVEQIVNAGVC 234 (654)
Q Consensus 158 L~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~-e~G~Ip~LV~LL~--s~~~~~q~~Aa~AL~nLa~~~e~~~~iv~~GaI 234 (654)
+..++.+....+..++..+--..++....+. ..|.++.++.+.. +.+...+..++.+|..=|.+...|..|. ..++
T Consensus 52 ~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~-~~~~ 130 (157)
T PF11701_consen 52 LDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFIS-KNYV 130 (157)
T ss_dssp HCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCH-HHCH
T ss_pred HccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHH-HHHH
Confidence 3444445677777888777644455554444 6688888998988 6678889999888866555555455554 5578
Q ss_pred HHHHHhhcC-CChh-HHHHHHHHHH
Q 006250 235 STFAKNLKD-GHMK-VQSVVAWAVS 257 (654)
Q Consensus 235 p~Lv~LL~s-~~~~-vq~~Aa~aL~ 257 (654)
+.|-++++. ++.. +|..|+-.|.
T Consensus 131 ~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 131 SWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp HHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HHHHHHHccccchHHHHHHHHHHHh
Confidence 999999964 4455 6777776664
No 167
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=68.89 E-value=96 Score=34.44 Aligned_cols=114 Identities=18% Similarity=0.216 Sum_probs=81.0
Q ss_pred CchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhh---h--------------hccHHHHHHHhccCCHHHHHH
Q 006250 482 TSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRAT---E--------------TRIIGPLVNLLDEREPEVIME 544 (654)
Q Consensus 482 ~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~---e--------------~~~I~pLV~lL~~~~~~v~~e 544 (654)
++|.+...++.|+.++.+ +++...++++++-+...+... + +.++|+|++-.++.+.+.+..
T Consensus 265 ~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~ 342 (415)
T PF12460_consen 265 GHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSN 342 (415)
T ss_pred CCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHH
Confidence 456667788999999875 777888999999988763321 1 125899999988888777777
Q ss_pred HHHHHHhccccCCCCCHHHHHHHHHC-CCHHHHHHhhccCCcchHHHHHHHHHHHHhCC
Q 006250 545 ATVALNKFATTENYLSETHSKAIINA-GGVKHLIQLVYFGEQMIQIPALTLLCYIAIKQ 602 (654)
Q Consensus 545 Aa~AL~~~a~~~n~~~~~~~~~Iv~~-ggi~~Lv~LL~~~~~~~q~~Al~~L~~ia~~~ 602 (654)
--.||+.+-..- | ..-.+-+. .-+|.|++-|..+|..++..++.+|..+..+.
T Consensus 343 yL~ALs~ll~~v----P-~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 343 YLTALSHLLKNV----P-KSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHHHhhC----C-HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 888998886321 2 12222232 34566778888888878888999999885544
No 168
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=67.77 E-value=19 Score=41.14 Aligned_cols=98 Identities=11% Similarity=0.091 Sum_probs=59.2
Q ss_pred HHHHHhhhcCcchhhHHHHHHHHh-hhcchhhhhccHHHHHHH-hccCCHHHHHHHHHHHHhccccCCCCCHHHHHHHHH
Q 006250 492 QLLHIVEKADSDLLIPSIRAIGNL-ARTFRATETRIIGPLVNL-LDEREPEVIMEATVALNKFATTENYLSETHSKAIIN 569 (654)
Q Consensus 492 ~L~~ll~~~~~~l~~~~~~alg~l-a~~~~~~e~~~I~pLV~l-L~~~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~ 569 (654)
.+-+++.+.++.++..++-+++-- +.|. ..++|..|+.. .++.+.+|++.|+.||+-.+|.+.
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alAy~GTg---n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~------------ 584 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALAYVGTG---NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR------------ 584 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHHHhcCC---cchhHhhhheeecccCchHHHHHHHHheeeeEecCc------------
Confidence 344566666677777766655421 1111 23577777777 688999999999999998887663
Q ss_pred CCCHHHHHHhhc-cCCcchHHHHHHHHHHHHhCCCch
Q 006250 570 AGGVKHLIQLVY-FGEQMIQIPALTLLCYIAIKQPES 605 (654)
Q Consensus 570 ~ggi~~Lv~LL~-~~~~~~q~~Al~~L~~ia~~~~~~ 605 (654)
+.+.-.++||. +.+..+....+.+|...+.+.++.
T Consensus 585 -~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~ 620 (926)
T COG5116 585 -DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK 620 (926)
T ss_pred -chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH
Confidence 12344555544 334445444445555444555553
No 169
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=67.71 E-value=36 Score=32.81 Aligned_cols=106 Identities=8% Similarity=0.076 Sum_probs=74.8
Q ss_pred cccccCCCH------HHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccC--CHHHHHHHHHHHHHhcCCcch-H
Q 006250 155 IAILHTGSM------EEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEG--ELEGQENAARAIGLLGRDAES-V 225 (654)
Q Consensus 155 V~lL~s~~~------~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~--~~~~q~~Aa~AL~nLa~~~e~-~ 225 (654)
++++.+|.. +.-..+..++..|-.++--.++ ..+.--|...+.+.... +..++..|...|-++..++.. -
T Consensus 17 ~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd-~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly 95 (160)
T PF11841_consen 17 IKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWD-TLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLY 95 (160)
T ss_pred HHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchh-hccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHH
Confidence 556665542 4556677777777755332343 44555667777777644 477888999999999988666 4
Q ss_pred HHHHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhc
Q 006250 226 EQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELAS 261 (654)
Q Consensus 226 ~~iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~ 261 (654)
..|.++=-++.|+..|+.++.++|.++...+-.|-.
T Consensus 96 ~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~ 131 (160)
T PF11841_consen 96 QLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFL 131 (160)
T ss_pred HHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 455566679999999999999999998877766643
No 170
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=67.07 E-value=38 Score=41.88 Aligned_cols=113 Identities=17% Similarity=0.240 Sum_probs=80.1
Q ss_pred CChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhh-hcCcchhhHHHHHHHHhhhcchhhhhccH
Q 006250 449 GPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVE-KADSDLLIPSIRAIGNLARTFRATETRII 527 (654)
Q Consensus 449 ~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~-~~~~~l~~~~~~alg~la~~~~~~e~~~I 527 (654)
+++++|..|--||+.+-..+ +.-|..-.+.|..+++ ++++.++..++-++|-++-.|++.-...-
T Consensus 935 sdp~Lq~AAtLaL~klM~iS--------------a~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie~~T 1000 (1251)
T KOG0414|consen 935 SDPELQAAATLALGKLMCIS--------------AEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEPWT 1000 (1251)
T ss_pred CCHHHHHHHHHHHHHHhhhh--------------HHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccccchhh
Confidence 34566666666665543221 1223344578899998 56699999999999999999987544566
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhccccCCCCCHHHHHHHHH-CCCHHHHHHhhccCCc
Q 006250 528 GPLVNLLDEREPEVIMEATVALNKFATTENYLSETHSKAIIN-AGGVKHLIQLVYFGEQ 585 (654)
Q Consensus 528 ~pLV~lL~~~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~-~ggi~~Lv~LL~~~~~ 585 (654)
+-|.+.|.+.++.|++.|...|+++...+ ++. .|-+.-+..++..+++
T Consensus 1001 ~~Ly~rL~D~~~~vRkta~lvlshLILnd----------miKVKGql~eMA~cl~D~~~ 1049 (1251)
T KOG0414|consen 1001 EHLYRRLRDESPSVRKTALLVLSHLILND----------MIKVKGQLSEMALCLEDPNA 1049 (1251)
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHHHhh----------hhHhcccHHHHHHHhcCCcH
Confidence 78888899999999999999999997443 222 4556556566655544
No 171
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=66.07 E-value=8.2 Score=36.64 Aligned_cols=29 Identities=14% Similarity=0.036 Sum_probs=21.4
Q ss_pred chHHHHHhhcCCChhHHHHHHHHHHHHhc
Q 006250 233 VCSTFAKNLKDGHMKVQSVVAWAVSELAS 261 (654)
Q Consensus 233 aIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~ 261 (654)
-|.+||++|.+.+.++...|+.+|.+.--
T Consensus 95 NV~~LI~~L~~~d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 95 NVQPLIDLLKSDDEELAEEAAEALKNTLL 123 (154)
T ss_dssp THHHHHHGG--G-TTTHHHHHHHHHT--T
T ss_pred cHHHHHHHHcCCcHHHHHHHHHHHHhhHH
Confidence 38999999999999999999999987654
No 172
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=65.92 E-value=3e+02 Score=33.21 Aligned_cols=77 Identities=21% Similarity=0.223 Sum_probs=54.4
Q ss_pred HHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHH
Q 006250 432 NLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRA 511 (654)
Q Consensus 432 ~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~a 511 (654)
.|+..--+|.+..+..+..++||.++|..|--|-..- .+..++ +.|.+.+..+.+..+.+++..+..|
T Consensus 591 ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L--~~~~~~----------~~v~pll~~L~~d~~~dvr~~a~~a 658 (759)
T KOG0211|consen 591 EITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLL--DESVRD----------EEVLPLLETLSSDQELDVRYRAILA 658 (759)
T ss_pred HHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhc--chHHHH----------HHHHHHHHHhccCcccchhHHHHHH
Confidence 3566678999999999999999999999987774322 122222 2344445555566668899999999
Q ss_pred HHHhhhcch
Q 006250 512 IGNLARTFR 520 (654)
Q Consensus 512 lg~la~~~~ 520 (654)
.+.+.-++.
T Consensus 659 ~~~i~l~~~ 667 (759)
T KOG0211|consen 659 FGSIELSRL 667 (759)
T ss_pred HHHHHHHHH
Confidence 888876544
No 173
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=65.79 E-value=4.7 Score=26.59 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=17.6
Q ss_pred hhhHHHHHHHHhhhcchhhhhccHHHHHHHhc
Q 006250 504 LLIPSIRAIGNLARTFRATETRIIGPLVNLLD 535 (654)
Q Consensus 504 l~~~~~~alg~la~~~~~~e~~~I~pLV~lL~ 535 (654)
++..++++||.+.. ...|++|++.|+
T Consensus 1 VR~~Aa~aLg~igd------~~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGD------PRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-S------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC------HHHHHHHHHHhc
Confidence 35567788887763 457888888774
No 174
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=65.66 E-value=3.4e+02 Score=33.73 Aligned_cols=142 Identities=18% Similarity=0.145 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHhhcCChHHH-HHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccCh----Hhh----------
Q 006250 411 MKAMAARALWKLSKGNLSIC-RNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNS----DLR---------- 475 (654)
Q Consensus 411 lk~~Aa~AL~~La~gn~~~~-~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~----~lr---------- 475 (654)
++..|+..+|.++++...+- +-+...=+...|..-+=+.+-++++-|+.|+-|.- |...|- ++-
T Consensus 444 VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~V-GR~~n~p~Gi~Lis~~dy~sV~~ 522 (1133)
T KOG1943|consen 444 VRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENV-GRQGNFPHGISLISTIDYFSVTN 522 (1133)
T ss_pred hHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHh-ccCCCCCCchhhhhhcchhhhhh
Confidence 55679999999999765431 11111111111233345667789999999987753 221110 111
Q ss_pred hh--------ccCCCchHHHHHHHHHHHH-hhhcCcchhhHHHHHHHHhhhcchhh-hhccHHHHHHHhccCCHHHHHHH
Q 006250 476 RS--------AFKPTSTAAKAVLEQLLHI-VEKADSDLLIPSIRAIGNLARTFRAT-ETRIIGPLVNLLDEREPEVIMEA 545 (654)
Q Consensus 476 r~--------a~~~~s~~~~~vv~~L~~l-l~~~~~~l~~~~~~alg~la~~~~~~-e~~~I~pLV~lL~~~~~~v~~eA 545 (654)
|+ -+...+.-...+++.|+.- +.++|..++..++++|..|+.+-..- .+...|||++....++...+.-.
T Consensus 523 rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~ls~~~~~r~g~ 602 (1133)
T KOG1943|consen 523 RSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTLSKDASMRHGV 602 (1133)
T ss_pred hhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhcCCChHHhhhh
Confidence 00 0112233334466666655 78899999999999999998765542 23578999999988888776665
Q ss_pred HHHHHhcc
Q 006250 546 TVALNKFA 553 (654)
Q Consensus 546 a~AL~~~a 553 (654)
..|.+.++
T Consensus 603 ~la~~ev~ 610 (1133)
T KOG1943|consen 603 FLAAGEVI 610 (1133)
T ss_pred HHHHHHHH
Confidence 55555554
No 175
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=64.69 E-value=20 Score=42.04 Aligned_cols=88 Identities=16% Similarity=0.076 Sum_probs=58.7
Q ss_pred ccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccC-CHHHHHHHHHHHHHhcCCcchHHHHHHcCchHH
Q 006250 158 LHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEG-ELEGQENAARAIGLLGRDAESVEQIVNAGVCST 236 (654)
Q Consensus 158 L~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~-~~~~q~~Aa~AL~nLa~~~e~~~~iv~~GaIp~ 236 (654)
...+++++|..|..+|+-+...+++ .+|..|++|.+. ++-++..||-||+--|.+..++.++ ..
T Consensus 564 VsD~nDDVrRaAVialGFVl~~dp~---------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi------~l 628 (929)
T KOG2062|consen 564 VSDVNDDVRRAAVIALGFVLFRDPE---------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAI------NL 628 (929)
T ss_pred ccccchHHHHHHHHHheeeEecChh---------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHH------HH
Confidence 3456788888888888887655342 467778887644 6888888888888777776666543 33
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHh
Q 006250 237 FAKNLKDGHMKVQSVVAWAVSELA 260 (654)
Q Consensus 237 Lv~LL~s~~~~vq~~Aa~aL~nLa 260 (654)
|=.+.+++..-||+-|+-+++-|-
T Consensus 629 Lepl~~D~~~fVRQgAlIa~amIm 652 (929)
T KOG2062|consen 629 LEPLTSDPVDFVRQGALIALAMIM 652 (929)
T ss_pred HhhhhcChHHHHHHHHHHHHHHHH
Confidence 333344444557776666666553
No 176
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=64.00 E-value=63 Score=33.43 Aligned_cols=98 Identities=12% Similarity=0.137 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccC-----CHHHHHHHHHHHHHhcCCc--chHHHHHHcCchHHH
Q 006250 165 EKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEG-----ELEGQENAARAIGLLGRDA--ESVEQIVNAGVCSTF 237 (654)
Q Consensus 165 ~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~-----~~~~q~~Aa~AL~nLa~~~--e~~~~iv~~GaIp~L 237 (654)
.-.+|...|-.+|++ ++.|....++-.=-.|-.+|..+ .+-++-.+.+.|+.|..++ +.-..+...+.||..
T Consensus 95 RVcnaL~LlQcvASH-pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC 173 (293)
T KOG3036|consen 95 RVCNALALLQCVASH-PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC 173 (293)
T ss_pred hHHHHHHHHHHHhcC-cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence 345677777778877 88888888875433444555433 2567888999999999763 456778899999999
Q ss_pred HHhhcCCChhHHHHHHHHHHHHhcCC
Q 006250 238 AKNLKDGHMKVQSVVAWAVSELASNH 263 (654)
Q Consensus 238 v~LL~s~~~~vq~~Aa~aL~nLa~~~ 263 (654)
++.+..|++..|..|+..+.-|-.++
T Consensus 174 Lrime~GSelSKtvA~fIlqKIlldD 199 (293)
T KOG3036|consen 174 LRIMESGSELSKTVATFILQKILLDD 199 (293)
T ss_pred HHHHhcccHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999887744
No 177
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=63.76 E-value=32 Score=40.31 Aligned_cols=123 Identities=13% Similarity=0.054 Sum_probs=82.9
Q ss_pred hHHHHcccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcchHHHHH
Q 006250 150 LIWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIV 229 (654)
Q Consensus 150 ~v~~lV~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~~iv 229 (654)
++..+++...+.+-.+|.+.+..|..+... ..-++..+-.+.+..|..-|....+.++.+|+.||+.+=.++.+-
T Consensus 86 ~f~hlLRg~Eskdk~VRfrvlqila~l~d~-~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de---- 160 (892)
T KOG2025|consen 86 TFYHLLRGTESKDKKVRFRVLQILALLSDE-NAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE---- 160 (892)
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHhcc-ccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC----
Confidence 345557777788999999999999998853 233444444566666666677777899999999999998553111
Q ss_pred HcCchHHHHHhhcC-CChhHHHHHHHHHHHHhcCChhhHHHHHh-----CCcHHHHHH
Q 006250 230 NAGVCSTFAKNLKD-GHMKVQSVVAWAVSELASNHPKCQDHFAQ-----NNIVRFLVS 281 (654)
Q Consensus 230 ~~GaIp~Lv~LL~s-~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~-----~g~I~~LV~ 281 (654)
+..++..++.+++. ++++|+.. +|.||+- ++..+-.|++ .|+++.|+.
T Consensus 161 e~~v~n~l~~liqnDpS~EVRRa---aLsnI~v-dnsTlp~IveRarDV~~anRrlvY 214 (892)
T KOG2025|consen 161 ECPVVNLLKDLIQNDPSDEVRRA---ALSNISV-DNSTLPCIVERARDVSGANRRLVY 214 (892)
T ss_pred cccHHHHHHHHHhcCCcHHHHHH---HHHhhcc-CcccchhHHHHhhhhhHHHHHHHH
Confidence 12356677888864 67899884 5777776 3444444443 355665554
No 178
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.71 E-value=3.1e+02 Score=32.61 Aligned_cols=118 Identities=18% Similarity=0.119 Sum_probs=71.6
Q ss_pred cccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcchHHHHHHcCch
Q 006250 155 IAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIVNAGVC 234 (654)
Q Consensus 155 V~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~~iv~~GaI 234 (654)
|.+|++.-...|.-.--.+.-|-..|.+.-+.| +-.+-+=|.+.++..+.-|..+++|+.+ .+.+++.. .-|
T Consensus 80 V~LLss~kysEKqIGYl~is~L~n~n~dl~klv-----in~iknDL~srn~~fv~LAL~~I~niG~-re~~ea~~--~DI 151 (938)
T KOG1077|consen 80 VNLLSSNKYSEKQIGYLFISLLLNENSDLMKLV-----INSIKNDLSSRNPTFVCLALHCIANIGS-REMAEAFA--DDI 151 (938)
T ss_pred HHHhhcCCccHHHHhHHHHHHHHhcchHHHHHH-----HHHHHhhhhcCCcHHHHHHHHHHHhhcc-HhHHHHhh--hhh
Confidence 667766655555443333333333333333333 2233444566677777888888888865 34444432 224
Q ss_pred HHHHHhhcCCC--hhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccC
Q 006250 235 STFAKNLKDGH--MKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFE 286 (654)
Q Consensus 235 p~Lv~LL~s~~--~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~ 286 (654)
| ++|.|++ .-|+..||-+|..|-..+|+ .+--.+-+.+++.||.+.
T Consensus 152 ~---KlLvS~~~~~~vkqkaALclL~L~r~spD---l~~~~~W~~riv~LL~D~ 199 (938)
T KOG1077|consen 152 P---KLLVSGSSMDYVKQKAALCLLRLFRKSPD---LVNPGEWAQRIVHLLDDQ 199 (938)
T ss_pred H---HHHhCCcchHHHHHHHHHHHHHHHhcCcc---ccChhhHHHHHHHHhCcc
Confidence 4 7887765 45888888888888776664 333346789999999765
No 179
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=63.60 E-value=2.8e+02 Score=32.30 Aligned_cols=159 Identities=17% Similarity=0.143 Sum_probs=81.5
Q ss_pred HHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhcc----CChhHHHHHHHHHHHHHhhcccCh---Hhhhh-ccCCCchH
Q 006250 414 MAARALWKLSKGNLSICRNLTESRALLCFAVLLEK----GPEDVKHFSAMALMEITAVAEKNS---DLRRS-AFKPTSTA 485 (654)
Q Consensus 414 ~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~----~~~~v~~~aa~AL~~Iaa~ae~~~---~lrr~-a~~~~s~~ 485 (654)
.|+..|+.+...-..-++. .|..|..|+++ ....++.-|..+++.+....-.+. ..... .-.+..-.
T Consensus 413 ea~~~l~~l~~~~~~Pt~e-----~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~ 487 (618)
T PF01347_consen 413 EAAQLLASLPFHVRRPTEE-----LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKY 487 (618)
T ss_dssp HHHHHHHHHHHT-----HH-----HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGG
T ss_pred HHHHHHHHHHhhcCCCCHH-----HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHH
Confidence 3666677666533222222 33334444443 345677777778777653322220 00000 00000111
Q ss_pred HHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhhhhccHHHHHHHhccC---CHHHHHHHHHHHHhccccCCCCCHH
Q 006250 486 AKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRATETRIIGPLVNLLDER---EPEVIMEATVALNKFATTENYLSET 562 (654)
Q Consensus 486 ~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~e~~~I~pLV~lL~~~---~~~v~~eAa~AL~~~a~~~n~~~~~ 562 (654)
.+.+.++|..-.+.++.+-+.-+++||||++. ...|+.|..++... ...++..|.|||.+++.. +++
T Consensus 488 ~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~----~~~ 557 (618)
T PF01347_consen 488 VPYLEQELKEAVSRGDEEEKIVYLKALGNLGH------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKH----CPE 557 (618)
T ss_dssp THHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-----HH
T ss_pred HHHHHHHHHHHhhccCHHHHHHHHHHhhccCC------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhc----CcH
Confidence 12233344434445566788899999999983 24889999988655 678999999999988632 222
Q ss_pred HHHHHHHCCCHHHHHHhhccCCcc--hHHHHHHHH
Q 006250 563 HSKAIINAGGVKHLIQLVYFGEQM--IQIPALTLL 595 (654)
Q Consensus 563 ~~~~Iv~~ggi~~Lv~LL~~~~~~--~q~~Al~~L 595 (654)
. ..+.|+.++....+. +.+.|+..|
T Consensus 558 ~--------v~~~l~~I~~n~~e~~EvRiaA~~~l 584 (618)
T PF01347_consen 558 K--------VREILLPIFMNTTEDPEVRIAAYLIL 584 (618)
T ss_dssp H--------HHHHHHHHHH-TTS-HHHHHHHHHHH
T ss_pred H--------HHHHHHHHhcCCCCChhHHHHHHHHH
Confidence 1 135777877665443 444454444
No 180
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=62.21 E-value=21 Score=36.59 Aligned_cols=133 Identities=17% Similarity=0.157 Sum_probs=84.4
Q ss_pred hhhhHHHHcccccCCCHHHHHHHHHHHHHhccCCc--hhHHHHHh---cCCHHHHHHhhc-----------cCCHHHHHH
Q 006250 147 ILCLIWEQIAILHTGSMEEKCDAAASLVSLARDND--RYGKLIIE---EGGVPPLLKLAY-----------EGELEGQEN 210 (654)
Q Consensus 147 i~~~v~~lV~lL~s~~~~~k~~Aa~aL~~La~~~~--~~~~~I~e---~G~Ip~LV~LL~-----------s~~~~~q~~ 210 (654)
-..|-|+... ..|++|...|.|++..=+ .+-+.|.. .|.+-..|.--. .+...-|.-
T Consensus 71 ~~~wwwd~l~-------~lREnalV~laNisgqLdLs~~~e~I~~PildGLLHWaVcpsa~A~Dpfp~~~~~~~lSPqrl 143 (257)
T PF12031_consen 71 EAEWWWDCLE-------QLRENALVTLANISGQLDLSDYPESIARPILDGLLHWAVCPSAEAQDPFPTAGPHSPLSPQRL 143 (257)
T ss_pred hHHHHHHHHH-------HHhhcceEeeeeeeeeeecccCchHHHHHHHHHHHHHHhccchhccCCCCCCCCCCCCCHHHH
Confidence 3456676664 356778888888875321 12222211 122211111100 011346899
Q ss_pred HHHHHHHhcCCcchHHHHHHcCch-------HHHHHhhcC-CChhHHHHHHHHHHHHhcCChhhHHHHH-hCCcHHHHHH
Q 006250 211 AARAIGLLGRDAESVEQIVNAGVC-------STFAKNLKD-GHMKVQSVVAWAVSELASNHPKCQDHFA-QNNIVRFLVS 281 (654)
Q Consensus 211 Aa~AL~nLa~~~e~~~~iv~~GaI-------p~Lv~LL~s-~~~~vq~~Aa~aL~nLa~~~~~~r~~i~-~~g~I~~LV~ 281 (654)
|..+|+.|+-.+.|...+..-+-. ..|+++|.. ++.-.++.|.-.|.||+..++.....+. +.+.|..|+.
T Consensus 144 aLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~ 223 (257)
T PF12031_consen 144 ALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISHLIA 223 (257)
T ss_pred HHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHHHHH
Confidence 999999999888887776655543 445555544 6788999999999999987665544444 5789999999
Q ss_pred hhccC
Q 006250 282 HLAFE 286 (654)
Q Consensus 282 LL~~~ 286 (654)
.+...
T Consensus 224 FiE~a 228 (257)
T PF12031_consen 224 FIEDA 228 (257)
T ss_pred HHHHH
Confidence 99654
No 181
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=61.50 E-value=42 Score=32.27 Aligned_cols=81 Identities=14% Similarity=0.080 Sum_probs=54.0
Q ss_pred hhhhHHHHcccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcC--CHHHHHHhhccCC-HHHHHHHHHHHHHhcCC--
Q 006250 147 ILCLIWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEG--GVPPLLKLAYEGE-LEGQENAARAIGLLGRD-- 221 (654)
Q Consensus 147 i~~~v~~lV~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G--~Ip~LV~LL~s~~-~~~q~~Aa~AL~nLa~~-- 221 (654)
+--|+-.+..+|++.++..|..++..+.-....++ .+.+.+.| -+..|+..|+..+ +...+.+..+|..|-..
T Consensus 23 l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 23 LHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 33445556788899898888877777777664321 45554554 3778888898766 56778888888876532
Q ss_pred --cchHHHHH
Q 006250 222 --AESVEQIV 229 (654)
Q Consensus 222 --~e~~~~iv 229 (654)
++-.+.+.
T Consensus 101 ~~p~l~Rei~ 110 (165)
T PF08167_consen 101 GKPTLTREIA 110 (165)
T ss_pred CCCchHHHHh
Confidence 45444443
No 182
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.18 E-value=3.9e+02 Score=32.90 Aligned_cols=72 Identities=10% Similarity=0.132 Sum_probs=51.2
Q ss_pred cCCHHHHHHhhc------cC--CHHHHHHHHHHHHHhcCC---cchHHHHHHcCchHHHHHhhcCCChhHHHHHHHHHHH
Q 006250 190 EGGVPPLLKLAY------EG--ELEGQENAARAIGLLGRD---AESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSE 258 (654)
Q Consensus 190 ~G~Ip~LV~LL~------s~--~~~~q~~Aa~AL~nLa~~---~e~~~~iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~n 258 (654)
.|.++-+++.|. .. ++..+..|..++++|+.- +..-+.+.+.-.++.+.-.++++.--+|..|||.++.
T Consensus 409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~ 488 (1010)
T KOG1991|consen 409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQ 488 (1010)
T ss_pred hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHH
Confidence 356777777776 22 356678899999999843 2222344555556666667788888899999999999
Q ss_pred Hhc
Q 006250 259 LAS 261 (654)
Q Consensus 259 La~ 261 (654)
.+.
T Consensus 489 ~~~ 491 (1010)
T KOG1991|consen 489 FSS 491 (1010)
T ss_pred HHh
Confidence 995
No 183
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=60.51 E-value=34 Score=32.58 Aligned_cols=26 Identities=35% Similarity=0.548 Sum_probs=21.1
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhc
Q 006250 527 IGPLVNLLDEREPEVIMEATVALNKF 552 (654)
Q Consensus 527 I~pLV~lL~~~~~~v~~eAa~AL~~~ 552 (654)
|.|||++|++.+..+..+|+.+|.+-
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aLk~T 121 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEALKNT 121 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHHHT-
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhh
Confidence 89999999999999999999999874
No 184
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=60.09 E-value=1.3e+02 Score=34.71 Aligned_cols=53 Identities=15% Similarity=0.249 Sum_probs=46.6
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHhcCCcchHHHHHHcCchHHHHHhhcCCCh
Q 006250 194 PPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIVNAGVCSTFAKNLKDGHM 246 (654)
Q Consensus 194 p~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~~iv~~GaIp~Lv~LL~s~~~ 246 (654)
..+.+++.+|+...|..|..-|..++.++.-...++...++..|.+++.+++.
T Consensus 86 ~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~ 138 (713)
T KOG2999|consen 86 KRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRV 138 (713)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCcc
Confidence 34567888999888888999999999999999999999999999999998764
No 185
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.93 E-value=2.9e+02 Score=31.03 Aligned_cols=186 Identities=15% Similarity=0.121 Sum_probs=111.1
Q ss_pred cCcccHHHHHHhhhcChhhHHH----HHHhcCC-CCCccccccCCCCcc--ccchhhhhHHHHcccccCCCHHH---HHH
Q 006250 99 IPAAAFRKTLMQLENSLGDVSW----LIRVSAS-SEENDDEYLGLPPIA--ANEPILCLIWEQIAILHTGSMEE---KCD 168 (654)
Q Consensus 99 ~~~~~l~~l~~lL~~~~~dv~~----lL~~s~~-~~~~~~~~~~lp~la--~~~~i~~~v~~lV~lL~s~~~~~---k~~ 168 (654)
+.--+++.++.+|...+-|+.. ||.-... +.....+.|+-.-|. -.+.+..++-.=|..|.....+. -..
T Consensus 122 veln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~ 201 (536)
T KOG2734|consen 122 VELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHN 201 (536)
T ss_pred HHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHH
Confidence 3456788888888776766542 3322221 111111111111110 01122233222245555433322 245
Q ss_pred HHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccC--CHHHHHHHHHHHHHhcCC-cchHHHHHHcCchHHHHHhhc---
Q 006250 169 AAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEG--ELEGQENAARAIGLLGRD-AESVEQIVNAGVCSTFAKNLK--- 242 (654)
Q Consensus 169 Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~--~~~~q~~Aa~AL~nLa~~-~e~~~~iv~~GaIp~Lv~LL~--- 242 (654)
....+-|+....+.+...+++.|.+..|+.-+... -..-+..|...|.-+-.+ .+++...-.-.+|-.+++-+.
T Consensus 202 ~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk 281 (536)
T KOG2734|consen 202 TLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYK 281 (536)
T ss_pred HHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhh
Confidence 56777888777688899999999888888754432 244556677777766655 568888888899999988763
Q ss_pred CCC------hhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhcc
Q 006250 243 DGH------MKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAF 285 (654)
Q Consensus 243 s~~------~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~ 285 (654)
..+ .+.-++--..|+.+-. .+++|+.|....++....-+++.
T Consensus 282 ~~dP~~~~E~EmmeNLFdcLCs~lm-~~~nr~~Fl~~EGlqLm~Lmlr~ 329 (536)
T KOG2734|consen 282 RHDPATVDEEEMMENLFDCLCSLLM-APANRERFLKGEGLQLMNLMLRE 329 (536)
T ss_pred ccCCCCcCHHHHHHHHHHHHHHHhc-ChhhhhhhhccccHHHHHHHHHH
Confidence 111 2344555556666666 68999999998888887777764
No 186
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=58.63 E-value=31 Score=40.34 Aligned_cols=133 Identities=17% Similarity=0.190 Sum_probs=93.8
Q ss_pred CCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhc-cCChhHHHHHHHHHHHHHhhcccChHhhhhccC
Q 006250 402 SEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLE-KGPEDVKHFSAMALMEITAVAEKNSDLRRSAFK 480 (654)
Q Consensus 402 ~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~-~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~ 480 (654)
+.||. ++..|.-+|.++-.=+.+-|. .-+|.|.+.++ ++++.++.|+.-++..++ +.-++
T Consensus 907 ~sd~~----lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~-vcfN~--------- 967 (1128)
T COG5098 907 FSDEE----LQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFL-VCFNT--------- 967 (1128)
T ss_pred cCCHH----HHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccc-eehhh---------
Confidence 45553 677888888877554444443 56888888887 677899999998886654 22111
Q ss_pred CCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhhhhccHHHHHHHhccCCHHHHHHHHHHHHhccccCC
Q 006250 481 PTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRATETRIIGPLVNLLDEREPEVIMEATVALNKFATTEN 557 (654)
Q Consensus 481 ~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a~~~n 557 (654)
.+..--+.|.+=+..++.+++..|.+++..|--...-.-.|-.|.++.+|.+.+.++..-|-.-+..+|..+|
T Consensus 968 ----~~de~t~yLyrrL~De~~~V~rtclmti~fLilagq~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~KdN 1040 (1128)
T COG5098 968 ----TADEHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDN 1040 (1128)
T ss_pred ----hhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHccceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhccc
Confidence 1223346788888888889999999998876521111112457888999999999998888888888887766
No 187
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=56.52 E-value=1.5e+02 Score=30.94 Aligned_cols=95 Identities=13% Similarity=0.119 Sum_probs=74.0
Q ss_pred HHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCC-----HHHHHHHHHHHHHhcCC--cchHHHHHHcCchHHHHH
Q 006250 167 CDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGE-----LEGQENAARAIGLLGRD--AESVEQIVNAGVCSTFAK 239 (654)
Q Consensus 167 ~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~-----~~~q~~Aa~AL~nLa~~--~e~~~~iv~~GaIp~Lv~ 239 (654)
.+|...|-.+|.+ ++.|..++++...--|.-+|...+ +.++-.+.+.++.|... ++.-..+.+...||..++
T Consensus 68 cnaLaLlQ~vAsh-petr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr 146 (262)
T PF04078_consen 68 CNALALLQCVASH-PETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLR 146 (262)
T ss_dssp HHHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHH
T ss_pred HHHHHHHHHHHcC-hHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHH
Confidence 4566667777876 889999999987666666776543 45677889999999974 456678889999999999
Q ss_pred hhcCCChhHHHHHHHHHHHHhcC
Q 006250 240 NLKDGHMKVQSVVAWAVSELASN 262 (654)
Q Consensus 240 LL~s~~~~vq~~Aa~aL~nLa~~ 262 (654)
.+..|++-.|..|...+..|-.+
T Consensus 147 ~me~GselSKtvAtfIlqKIL~d 169 (262)
T PF04078_consen 147 IMEFGSELSKTVATFILQKILLD 169 (262)
T ss_dssp HHHHS-HHHHHHHHHHHHHHHHS
T ss_pred HHHhccHHHHHHHHHHHHHHHcc
Confidence 99999999999999999988773
No 188
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=54.48 E-value=14 Score=24.64 Aligned_cols=14 Identities=36% Similarity=0.344 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHhcc
Q 006250 540 EVIMEATVALNKFA 553 (654)
Q Consensus 540 ~v~~eAa~AL~~~a 553 (654)
.|+.+|+++|+++.
T Consensus 2 ~vR~~aa~aLg~~~ 15 (30)
T smart00567 2 LVRHEAAFALGQLG 15 (30)
T ss_pred HHHHHHHHHHHHcC
Confidence 47899999999984
No 189
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=53.93 E-value=96 Score=26.94 Aligned_cols=80 Identities=14% Similarity=0.202 Sum_probs=54.3
Q ss_pred HHhhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhh
Q 006250 443 AVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRAT 522 (654)
Q Consensus 443 ~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~ 522 (654)
...|.++..-+|..+-..|..+-.... .+. .-...++..++..|+++|+-+-..|++++..|+..++.
T Consensus 9 l~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~----------~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~- 76 (92)
T PF10363_consen 9 LSDLNDPLPPVRAHGLVLLRKLIESKS-EPV----------IDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD- 76 (92)
T ss_pred HHHccCCCcchHHHHHHHHHHHHHcCC-cch----------hhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH-
Confidence 344566666777776666666542111 000 11245777888899999999999999999999987764
Q ss_pred hhccHHHHHHHhcc
Q 006250 523 ETRIIGPLVNLLDE 536 (654)
Q Consensus 523 e~~~I~pLV~lL~~ 536 (654)
.+++.|++...+
T Consensus 77 --~vl~~L~~~y~~ 88 (92)
T PF10363_consen 77 --EVLPILLDEYAD 88 (92)
T ss_pred --HHHHHHHHHHhC
Confidence 488888876543
No 190
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=52.40 E-value=56 Score=28.40 Aligned_cols=81 Identities=17% Similarity=0.103 Sum_probs=59.7
Q ss_pred HHHhhccCCHHHHHHHHHHHHHhcCCcchHHHHHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCc
Q 006250 196 LLKLAYEGELEGQENAARAIGLLGRDAESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNI 275 (654)
Q Consensus 196 LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~~iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~ 275 (654)
.+..|.++.+.+|-.+..-|..|..... ...+-..+.+..+...|+++++-+--+|+..|..|+...|+ .+
T Consensus 8 al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~--------~v 78 (92)
T PF10363_consen 8 ALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD--------EV 78 (92)
T ss_pred HHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH--------HH
Confidence 3556677778899999999998887644 22223356777888889999999999999999999985554 25
Q ss_pred HHHHHHhhcc
Q 006250 276 VRFLVSHLAF 285 (654)
Q Consensus 276 I~~LV~LL~~ 285 (654)
++.|++...+
T Consensus 79 l~~L~~~y~~ 88 (92)
T PF10363_consen 79 LPILLDEYAD 88 (92)
T ss_pred HHHHHHHHhC
Confidence 6777765543
No 191
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=52.30 E-value=67 Score=33.11 Aligned_cols=81 Identities=16% Similarity=0.120 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHhccCCchhHHHHHhcCCHHH-------HHHhhc-cCCHHHHHHHHHHHHHhcCCcch-H-HHHHHcCc
Q 006250 164 EEKCDAAASLVSLARDNDRYGKLIIEEGGVPP-------LLKLAY-EGELEGQENAARAIGLLGRDAES-V-EQIVNAGV 233 (654)
Q Consensus 164 ~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~-------LV~LL~-s~~~~~q~~Aa~AL~nLa~~~e~-~-~~iv~~Ga 233 (654)
.-|.-|..+|..|+.. +.|.+.|...+-.+. |+++|. .+++..++-|...|.+|+..++. . ..-.+.++
T Consensus 139 SPqrlaLEaLcKLsV~-e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 139 SPQRLALEALCKLSVI-ENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CHHHHHHHHHHHhhee-ccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 4567899999999966 788888887665443 445554 34688999999999999987543 3 33346789
Q ss_pred hHHHHHhhcCCC
Q 006250 234 CSTFAKNLKDGH 245 (654)
Q Consensus 234 Ip~Lv~LL~s~~ 245 (654)
|..|+.++.+.+
T Consensus 218 i~~Li~FiE~a~ 229 (257)
T PF12031_consen 218 ISHLIAFIEDAE 229 (257)
T ss_pred HHHHHHHHHHHH
Confidence 999999986543
No 192
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=50.43 E-value=1e+02 Score=35.65 Aligned_cols=101 Identities=11% Similarity=0.102 Sum_probs=72.4
Q ss_pred hHHHHcccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCC---cchHH
Q 006250 150 LIWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRD---AESVE 226 (654)
Q Consensus 150 ~v~~lV~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~---~e~~~ 226 (654)
++..+++.+.+.+..+|...+..|+.+. ++-.-.+...-.|.+..|.+-+-...+-++.+|+.+|+.+-.. ++|+.
T Consensus 92 ~~~h~lRg~eskdk~VR~r~lqila~~~-d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~~ 170 (885)
T COG5218 92 TFYHLLRGTESKDKKVRKRSLQILALLS-DVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENRI 170 (885)
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHHH
Confidence 3455577888899999999999999887 3344455666677777777766666788999999999987643 44432
Q ss_pred HHHHcCchHHHHHhhcC-CChhHHHHHHHHHHHHhc
Q 006250 227 QIVNAGVCSTFAKNLKD-GHMKVQSVVAWAVSELAS 261 (654)
Q Consensus 227 ~iv~~GaIp~Lv~LL~s-~~~~vq~~Aa~aL~nLa~ 261 (654)
...|+.+++. ++.+|+.. +|.||..
T Consensus 171 -------~n~l~~~vqnDPS~EVRr~---allni~v 196 (885)
T COG5218 171 -------VNLLKDIVQNDPSDEVRRL---ALLNISV 196 (885)
T ss_pred -------HHHHHHHHhcCcHHHHHHH---HHHHeee
Confidence 2367777764 66788874 5677766
No 193
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=49.87 E-value=15 Score=39.11 Aligned_cols=70 Identities=13% Similarity=0.122 Sum_probs=58.3
Q ss_pred hHHHHcccccCCCHH-HHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhc
Q 006250 150 LIWEQIAILHTGSME-EKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLG 219 (654)
Q Consensus 150 ~v~~lV~lL~s~~~~-~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa 219 (654)
++..|.++|++..+. .-.-|+.-|+.+-+..|+.+..+.+.|+=..++.|+.+++++++.+|..|+..+-
T Consensus 357 i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 357 IVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 466678888877665 3345777888887777999999999999999999999999999999999987654
No 194
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=48.53 E-value=2.7e+02 Score=32.19 Aligned_cols=90 Identities=19% Similarity=0.273 Sum_probs=55.6
Q ss_pred HHHHHHHHHh----hhcCcchhhHHHHHHHHhhhcchhhhhccHHHHHHHhc---cCCHHHHHHHHHHHHhccccCCCCC
Q 006250 488 AVLEQLLHIV----EKADSDLLIPSIRAIGNLARTFRATETRIIGPLVNLLD---EREPEVIMEATVALNKFATTENYLS 560 (654)
Q Consensus 488 ~vv~~L~~ll----~~~~~~l~~~~~~alg~la~~~~~~e~~~I~pLV~lL~---~~~~~v~~eAa~AL~~~a~~~n~~~ 560 (654)
.+++.|.+.+ +..+.+-+.-+++||||++. ..+|+.|..++. .....++..|.|||.+++...
T Consensus 442 ~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~------~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~---- 511 (574)
T smart00638 442 ELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH------PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRD---- 511 (574)
T ss_pred HHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC------hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhC----
Confidence 3444444444 34556667889999999984 246677777774 234679999999999886321
Q ss_pred HHHHHHHHHCCCHHHHHHhhccCCcc--hHHHHHHHH
Q 006250 561 ETHSKAIINAGGVKHLIQLVYFGEQM--IQIPALTLL 595 (654)
Q Consensus 561 ~~~~~~Iv~~ggi~~Lv~LL~~~~~~--~q~~Al~~L 595 (654)
++ -.-+.|+.+....++. +.+.|...|
T Consensus 512 p~--------~v~~~l~~i~~n~~e~~EvRiaA~~~l 540 (574)
T smart00638 512 PR--------KVQEVLLPIYLNRAEPPEVRMAAVLVL 540 (574)
T ss_pred ch--------HHHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 11 1235677776655443 444454444
No 195
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=47.86 E-value=1.1e+02 Score=27.07 Aligned_cols=68 Identities=12% Similarity=0.009 Sum_probs=52.7
Q ss_pred hcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcchHHHHHHcCchHHHHHhhcCCChhHHHHHHHHH
Q 006250 189 EEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAV 256 (654)
Q Consensus 189 e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~~iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL 256 (654)
+.+.+..|++.....+...+..+..-|..+..++.....+.+-|++..|-++=..-++..+...-..+
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 44667777777777777788999999999999999999999999999987776555566655544433
No 196
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.73 E-value=3.6e+02 Score=33.23 Aligned_cols=111 Identities=11% Similarity=0.118 Sum_probs=69.5
Q ss_pred cchhhHHHHHHHHhhhcchhhh------hcc-HHHHHHHhccCCHHHHHHHHHHHHhccccCCCCCHHHHHHHHHCCCHH
Q 006250 502 SDLLIPSIRAIGNLARTFRATE------TRI-IGPLVNLLDEREPEVIMEATVALNKFATTENYLSETHSKAIINAGGVK 574 (654)
Q Consensus 502 ~~l~~~~~~alg~la~~~~~~e------~~~-I~pLV~lL~~~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~ 574 (654)
+..+.-|.+++|+|+....... ..+ ++.+.=.+++.--..+..|||.++.|++-+ +....+... +..
T Consensus 432 ~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~d-f~d~~~l~~-----ale 505 (1010)
T KOG1991|consen 432 PRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSID-FKDPNNLSE-----ALE 505 (1010)
T ss_pred hhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhcc-CCChHHHHH-----HHH
Confidence 4567788999999997443211 112 233333457777778889999999997544 433333333 234
Q ss_pred HHHHhhc-cCCcchHHHHHHHHHHHHhCCCchHHHHhhhhhHHHH
Q 006250 575 HLIQLVY-FGEQMIQIPALTLLCYIAIKQPESKTLAQEEVLIVLE 618 (654)
Q Consensus 575 ~Lv~LL~-~~~~~~q~~Al~~L~~ia~~~~~~~~l~~~~~l~~l~ 618 (654)
.-.+.|. +.+-.+++.|+.+|-.+..|.....+=.++-+-+.++
T Consensus 506 ~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq 550 (1010)
T KOG1991|consen 506 LTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQ 550 (1010)
T ss_pred HHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHH
Confidence 5556665 4444589999999998877777664433444444444
No 197
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.53 E-value=1.5e+02 Score=35.45 Aligned_cols=138 Identities=20% Similarity=0.233 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhhccc-----ChHhhhhc-------
Q 006250 411 MKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEK-----NSDLRRSA------- 478 (654)
Q Consensus 411 lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~-----~~~lrr~a------- 478 (654)
..-.||+|+.++..-++.. +. .++-.|-.++.+.+.-+|..|.++|.+++-.--+ |.++-...
T Consensus 261 V~~EaArai~~l~~~~~r~---l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~NrsI 335 (865)
T KOG1078|consen 261 VIYEAARAIVSLPNTNSRE---LA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITDSNRSI 335 (865)
T ss_pred HHHHHHHHHhhccccCHhh---cc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHhhhcccccch
Confidence 3456899999987655432 22 2556666668999999999999999888643222 23332210
Q ss_pred --------cCCCc-hHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhhhhccHHHHHHHh-ccCCHHHHHHHHHH
Q 006250 479 --------FKPTS-TAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRATETRIIGPLVNLL-DEREPEVIMEATVA 548 (654)
Q Consensus 479 --------~~~~s-~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~e~~~I~pLV~lL-~~~~~~v~~eAa~A 548 (654)
+|+.. -.......|+..++.+-+++.++-.+.|+-.|+..|+...+.++..|-++| +++.++-++....+
T Consensus 336 at~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~eGg~e~K~aivd~ 415 (865)
T KOG1078|consen 336 ATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLREEGGFEFKRAIVDA 415 (865)
T ss_pred hHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHhccCchHHHHHHHH
Confidence 01111 111235556777777777899999999999999999888888899999988 56667777776666
Q ss_pred HHhcc
Q 006250 549 LNKFA 553 (654)
Q Consensus 549 L~~~a 553 (654)
+.-..
T Consensus 416 Ii~ii 420 (865)
T KOG1078|consen 416 IIDII 420 (865)
T ss_pred HHHHH
Confidence 65443
No 198
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=46.44 E-value=2.6e+02 Score=28.97 Aligned_cols=92 Identities=17% Similarity=0.292 Sum_probs=55.9
Q ss_pred hhHHHHHHHHhhhcchhhhhccHHHHHHHhccCCHHHHHHHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhccCC
Q 006250 505 LIPSIRAIGNLARTFRATETRIIGPLVNLLDEREPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGE 584 (654)
Q Consensus 505 ~~~~~~alg~la~~~~~~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~ 584 (654)
...++.-|+.+ .+.+..|||+++++..+..+-.-.- -+. ++ .....-+.+-.|-+.+|.+++..++
T Consensus 59 ~~~a~~LLaq~------re~~A~~~li~l~~~~~~~~~~l~G----D~~-tE---~l~~ilasv~~G~~~~L~~li~~~~ 124 (249)
T PF06685_consen 59 HFYALYLLAQF------REERALPPLIRLFSQDDDFLEDLFG----DFI-TE---DLPRILASVGDGDIEPLKELIEDPD 124 (249)
T ss_pred HHHHHHHHHHH------hhhhhHHHHHHHHcCCcchHHHHHc----chh-Hh---HHHHHHHHHhCCCHHHHHHHHhCCc
Confidence 44454444443 2567999999999766542221111 111 11 1122334455678899999988775
Q ss_pred c--chHHHHHHHHHHHHhCCCc-hHHHHh
Q 006250 585 Q--MIQIPALTLLCYIAIKQPE-SKTLAQ 610 (654)
Q Consensus 585 ~--~~q~~Al~~L~~ia~~~~~-~~~l~~ 610 (654)
. -++..|+.+|..++...+. ++++.+
T Consensus 125 ~~~yvR~aa~~aL~~l~~~~~~~Re~vi~ 153 (249)
T PF06685_consen 125 ADEYVRMAAISALAFLVHEGPISREEVIQ 153 (249)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 4 3677799999999876665 566654
No 199
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=45.91 E-value=41 Score=30.22 Aligned_cols=40 Identities=25% Similarity=0.243 Sum_probs=32.2
Q ss_pred HHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHH
Q 006250 167 CDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEG 207 (654)
Q Consensus 167 ~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~ 207 (654)
-.....|..||.. |+.-..+++.|+++.|+.||.+.+.++
T Consensus 64 d~~Ik~l~~La~~-P~LYp~lv~l~~v~sL~~LL~HeN~DI 103 (108)
T PF08216_consen 64 DEEIKKLSVLATA-PELYPELVELGAVPSLLGLLSHENTDI 103 (108)
T ss_pred HHHHHHHHHccCC-hhHHHHHHHcCCHHHHHHHHCCCCcce
Confidence 3456778888866 677777789999999999999988665
No 200
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=45.06 E-value=86 Score=38.99 Aligned_cols=123 Identities=18% Similarity=0.188 Sum_probs=83.5
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhc-cCChhHHHHHHHHHHHHHhhcccChHhhhhcc
Q 006250 401 ESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLE-KGPEDVKHFSAMALMEITAVAEKNSDLRRSAF 479 (654)
Q Consensus 401 ~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~-~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~ 479 (654)
.+.||+ ++..|.-||+++-.=+.+-|. ..+|.|...++ ++.+-+|.|+.-|++-++ ..-.| .+
T Consensus 933 ~~sdp~----Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDla-v~fpn------li 996 (1251)
T KOG0414|consen 933 LFSDPE----LQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLA-VRFPN------LI 996 (1251)
T ss_pred cCCCHH----HHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchh-hhccc------cc
Confidence 355674 789999999999876655554 56788888887 677899999999987775 22211 01
Q ss_pred CCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhhhhccHHHHHHHhccCCHHHHHHHH
Q 006250 480 KPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRATETRIIGPLVNLLDEREPEVIMEAT 546 (654)
Q Consensus 480 ~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~e~~~I~pLV~lL~~~~~~v~~eAa 546 (654)
.+ --+.|.+-+.++++.++..|...|..|=-.---.-.|.++-+..+|.++++.|+-=|=
T Consensus 997 e~-------~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKGql~eMA~cl~D~~~~IsdlAk 1056 (1251)
T KOG0414|consen 997 EP-------WTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVKGQLSEMALCLEDPNAEISDLAK 1056 (1251)
T ss_pred ch-------hhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcccHHHHHHHhcCCcHHHHHHHH
Confidence 11 1246777888888889999988887765211111125577888888888877654443
No 201
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=43.96 E-value=3.4e+02 Score=31.36 Aligned_cols=103 Identities=21% Similarity=0.300 Sum_probs=68.2
Q ss_pred HHHHHHHHHHhhhcC----cchhhHHHHHHHHhhhcchhhh--------hccHHHHHHHhc----cCCHHHHHHHHHHHH
Q 006250 487 KAVLEQLLHIVEKAD----SDLLIPSIRAIGNLARTFRATE--------TRIIGPLVNLLD----EREPEVIMEATVALN 550 (654)
Q Consensus 487 ~~vv~~L~~ll~~~~----~~l~~~~~~alg~la~~~~~~e--------~~~I~pLV~lL~----~~~~~v~~eAa~AL~ 550 (654)
+.+++.+..+++++. +.+...|..++|++++..+... ...+++|.+.|. .++.+.+.-+..||+
T Consensus 392 ~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG 471 (574)
T smart00638 392 EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALG 471 (574)
T ss_pred HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhh
Confidence 457788888887543 4577889999999998544321 246788888773 456666667889999
Q ss_pred hccccCCCCCHHHHHHHHHCCCHHHHHHhhccC---CcchHHHHHHHHHHHHhCCCc
Q 006250 551 KFATTENYLSETHSKAIINAGGVKHLIQLVYFG---EQMIQIPALTLLCYIAIKQPE 604 (654)
Q Consensus 551 ~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~---~~~~q~~Al~~L~~ia~~~~~ 604 (654)
|++... .++.|...+... +..+++.|+.+|..++.+.+.
T Consensus 472 N~g~~~---------------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~ 513 (574)
T smart00638 472 NAGHPS---------------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPR 513 (574)
T ss_pred ccCChh---------------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCch
Confidence 986322 234555555422 223677799999988765553
No 202
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.46 E-value=1.2e+02 Score=32.52 Aligned_cols=128 Identities=15% Similarity=0.162 Sum_probs=68.4
Q ss_pred HHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhhhhccHHHHHHHh----ccCCHHHHHHHHHHHHhccccCCCCCHH
Q 006250 487 KAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRATETRIIGPLVNLL----DEREPEVIMEATVALNKFATTENYLSET 562 (654)
Q Consensus 487 ~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~e~~~I~pLV~lL----~~~~~~v~~eAa~AL~~~a~~~n~~~~~ 562 (654)
+.++-++++=++...+.+-..+|.+++.+.....+.-......+|..| +..+.-|+..|-.||..+.. +..+
T Consensus 128 ~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~---~vtp- 203 (334)
T KOG2933|consen 128 HEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLHKASQDNRFVREDAEKALVAMVN---HVTP- 203 (334)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHh---ccCh-
Confidence 445556666666656667777888888777655543222455555555 22334477778888877641 1111
Q ss_pred HHHHHHHCCCHHHHHHhhccCCcchHHHHHHHHHHHHhCCCchHHHHhhhhhHHHHhhh-hhhhhhcCccHHh
Q 006250 563 HSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIAIKQPESKTLAQEEVLIVLEWSF-KQAHLVAEPSIEA 634 (654)
Q Consensus 563 ~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~ia~~~~~~~~l~~~~~l~~l~~~~-~~~~~~q~~~~~~ 634 (654)
++. ++.|+--+....+.+...+..+.-|+.. +-||.++++.++ +++..+|++--..
T Consensus 204 -~~~------L~~L~~~~~~~n~r~r~~a~~~~~~~v~---------rl~v~~~~~~~~~dl~~a~~~~~~d~ 260 (334)
T KOG2933|consen 204 -QKL------LRKLIPILQHSNPRVRAKAALCFSRCVI---------RLGVLPVLLQGSCDLSRAAQEQGSDK 260 (334)
T ss_pred -HHH------HHHHHHHHhhhchhhhhhhhccccccce---------eccccchhhHhHHHHHHHHHhhhccc
Confidence 222 3455555655566544444444433321 223666776666 4455555544333
No 203
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=42.01 E-value=80 Score=29.69 Aligned_cols=47 Identities=19% Similarity=0.143 Sum_probs=31.3
Q ss_pred CHHHHHHhhccCCcchHHHHHHHHHHHHhCCCc--hHHHHhhhhhHHHH
Q 006250 572 GVKHLIQLVYFGEQMIQIPALTLLCYIAIKQPE--SKTLAQEEVLIVLE 618 (654)
Q Consensus 572 gi~~Lv~LL~~~~~~~q~~Al~~L~~ia~~~~~--~~~l~~~~~l~~l~ 618 (654)
+++.|..-|.++++.+|..|+.+|..++.|.|. ..+++..+.+..|.
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~ 90 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELK 90 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHH
Confidence 345555556667777888888888888888776 34555555555554
No 204
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=41.92 E-value=90 Score=29.35 Aligned_cols=71 Identities=11% Similarity=-0.021 Sum_probs=57.4
Q ss_pred hHHHHcccccCCCHHHHHHHHHHHHHhccCC-chhHHHHHhcCCHHHHHHhhcc-CCHHHHHHHHHHHHHhcC
Q 006250 150 LIWEQIAILHTGSMEEKCDAAASLVSLARDN-DRYGKLIIEEGGVPPLLKLAYE-GELEGQENAARAIGLLGR 220 (654)
Q Consensus 150 ~v~~lV~lL~s~~~~~k~~Aa~aL~~La~~~-~~~~~~I~e~G~Ip~LV~LL~s-~~~~~q~~Aa~AL~nLa~ 220 (654)
.++.+.+.|+++++.++..|...|-.+.++. ......|.+.+.+..|++++.. .++.++......+...+.
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 3444578899999999999999998887653 5678889999999999999974 457888888888877663
No 205
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=41.77 E-value=79 Score=29.86 Aligned_cols=47 Identities=21% Similarity=0.222 Sum_probs=34.4
Q ss_pred CHHHHHHhhccCCcchHHHHHHHHHHHHhCCCc--hHHHHhhhhhHHHH
Q 006250 572 GVKHLIQLVYFGEQMIQIPALTLLCYIAIKQPE--SKTLAQEEVLIVLE 618 (654)
Q Consensus 572 gi~~Lv~LL~~~~~~~q~~Al~~L~~ia~~~~~--~~~l~~~~~l~~l~ 618 (654)
+++.|..=|.++++.+|..|+.+|..++.|.|. +.+++..+.+..|.
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~ 86 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELK 86 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHH
Confidence 345666666777888889999999999888887 45666666666654
No 206
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=41.61 E-value=62 Score=33.34 Aligned_cols=110 Identities=12% Similarity=0.033 Sum_probs=72.9
Q ss_pred CCCHHHHHHHHHHHHHhccCCchhHHHHHhcC--CHHHHHHhhccC----CHHHHHHHHHHHHHhcCC--cchHHHHHHc
Q 006250 160 TGSMEEKCDAAASLVSLARDNDRYGKLIIEEG--GVPPLLKLAYEG----ELEGQENAARAIGLLGRD--AESVEQIVNA 231 (654)
Q Consensus 160 s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G--~Ip~LV~LL~s~----~~~~q~~Aa~AL~nLa~~--~e~~~~iv~~ 231 (654)
+..+..+.-+.+.+.|+-.+ +..++.+.+.. -|...+..+... +..+|..++..+.|++.. ..+...-...
T Consensus 121 ~~~~~~~ml~lR~l~NlF~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~ 199 (268)
T PF08324_consen 121 SSPPANQMLALRLLANLFSH-PPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQS 199 (268)
T ss_dssp TSSHHHHHHHHHHHHHHTTS-CCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHH
T ss_pred CCcHHHHHHHHHHHHHhhCC-CccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 46778888899999999865 66787777653 466666655554 578899999999999843 1110000111
Q ss_pred CchHHHHHhh-cC-CChhHHHHHHHHHHHHhcCChhhHHHH
Q 006250 232 GVCSTFAKNL-KD-GHMKVQSVVAWAVSELASNHPKCQDHF 270 (654)
Q Consensus 232 GaIp~Lv~LL-~s-~~~~vq~~Aa~aL~nLa~~~~~~r~~i 270 (654)
..+..+++.+ .. .++++.....-||++|...++..++..
T Consensus 200 ~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~ 240 (268)
T PF08324_consen 200 ELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLA 240 (268)
T ss_dssp HHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHC
T ss_pred HHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHH
Confidence 1244555533 33 578999999999999997554444433
No 207
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=41.16 E-value=4.4e+02 Score=27.50 Aligned_cols=159 Identities=19% Similarity=0.130 Sum_probs=88.9
Q ss_pred HHHHHHHHhhc-------CChHHHHHHHhhCcHHHHHHhhccCC----hhHHHHHHHHHHHHHhhcccChHhhhhccCCC
Q 006250 414 MAARALWKLSK-------GNLSICRNLTESRALLCFAVLLEKGP----EDVKHFSAMALMEITAVAEKNSDLRRSAFKPT 482 (654)
Q Consensus 414 ~Aa~AL~~La~-------gn~~~~~~i~e~gaL~~L~~LL~~~~----~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~ 482 (654)
.+.+.|.+|+. |+.+..-.+.-...+|.|+.-+++++ ...-..+|.+|..++... ..+.+.+
T Consensus 81 ~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~-~~~~La~------ 153 (262)
T PF14225_consen 81 LTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQ-GLPNLAR------ 153 (262)
T ss_pred HHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhC-CCccHHH------
Confidence 45666666665 33322222333346777777777776 234457788888887432 2333333
Q ss_pred chHHHHHHHHHHHHhhhcC-cchhhHHHHHHHHhhhcc-hhhhhccHHHHHHHhccCCHHHHHHHHHHHHhccccCCCCC
Q 006250 483 STAAKAVLEQLLHIVEKAD-SDLLIPSIRAIGNLARTF-RATETRIIGPLVNLLDEREPEVIMEATVALNKFATTENYLS 560 (654)
Q Consensus 483 s~~~~~vv~~L~~ll~~~~-~~l~~~~~~alg~la~~~-~~~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a~~~n~~~ 560 (654)
+.....+.. .+...-....+..+...| +..+..++.-|.++|.++...++.....-|.-+-..-+...
T Consensus 154 ----------il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~ 223 (262)
T PF14225_consen 154 ----------ILSSYAKGRFRDKDDFLSQVVSYLREAFFPDHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRS 223 (262)
T ss_pred ----------HHHHHHhcCCCCHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCC
Confidence 111111111 111112222333444544 56666788899999999999999998888876642211111
Q ss_pred HHHHHHHHHCCCHHHHHHhhccCCcchHHHHHHHHHHH
Q 006250 561 ETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYI 598 (654)
Q Consensus 561 ~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~i 598 (654)
+ ...+-|.||.+||.+.-- ..|+..|-++
T Consensus 224 ~------~~~dlispllrlL~t~~~---~eAL~VLd~~ 252 (262)
T PF14225_consen 224 P------HGADLISPLLRLLQTDLW---MEALEVLDEI 252 (262)
T ss_pred C------cchHHHHHHHHHhCCccH---HHHHHHHHHH
Confidence 1 334568999999975432 3366666555
No 208
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=40.99 E-value=7.4e+02 Score=30.06 Aligned_cols=398 Identities=15% Similarity=0.113 Sum_probs=198.1
Q ss_pred chhhhhHHHHcccc-cCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcc
Q 006250 145 EPILCLIWEQIAIL-HTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAE 223 (654)
Q Consensus 145 ~~i~~~v~~lV~lL-~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e 223 (654)
+++..-...++.-| +...+.+|..++.-+++++.. ..+.....+.+|-+++|+.+....+++.|..++.++...-+
T Consensus 232 ~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~---~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~ 308 (759)
T KOG0211|consen 232 DAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKV---LESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLD 308 (759)
T ss_pred HHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHH---HHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcC
Confidence 34444333334444 456888999999999999865 33477888999999999998888999999998888875311
Q ss_pred hHHHHHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhc---
Q 006250 224 SVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQ--- 300 (654)
Q Consensus 224 ~~~~iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~--- 300 (654)
... =+..-..+.+++...+++..++...+.....+...-.. ...+---+++...+++... ....+++..+.
T Consensus 309 ~~~-d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~---~~~~~~~~~~~~~l~~~~~--~e~r~a~a~~~~~l 382 (759)
T KOG0211|consen 309 DDD-DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP---SATRTQLVPPVSNLLKDEE--WEVRYAIAKKVQKL 382 (759)
T ss_pred Cch-hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc---ccCcccchhhHHHHhcchh--hhhhHHhhcchHHH
Confidence 110 22234678888888888888877777766666542110 1122233555555554332 11222222100
Q ss_pred ------------cc----hhhhHHHHhhcCCCC---CCCCCCCCCCCCCCCcccccCCC---CCCCCcchhhHHhhhh--
Q 006250 301 ------------NI----SSLHSALVASNSQNP---KDHRTAPPQQQGNGNISKVSCPM---PNQANSSISNVVTNTI-- 356 (654)
Q Consensus 301 ------------~~----~~i~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~i~~vv~s~~-- 356 (654)
.. ..+..+|...+.... ........+.+..+ ..+++++ ...-.+..+.|..+..
T Consensus 383 ~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~--~ti~~llp~~~~~l~de~~~V~lnli~~ 460 (759)
T KOG0211|consen 383 ACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKE--RTISELLPLLIGNLKDEDPIVRLNLIDK 460 (759)
T ss_pred hhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcC--cCccccChhhhhhcchhhHHHHHhhHHH
Confidence 00 011111111000000 00000000000000 0111110 0000111111211111
Q ss_pred -hh--cccCCCcccccCCcccccccCCCCCCccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHH
Q 006250 357 -AI--KTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNL 433 (654)
Q Consensus 357 -a~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i 433 (654)
.. ..+.. .|... .++...|.+. ...+|. .-.+.....+.++.++. +....+
T Consensus 461 ls~~~~v~~v---~g~~~------~s~slLp~i~------------el~~d~--~wRvr~ail~~ip~la~---q~~~~~ 514 (759)
T KOG0211|consen 461 LSLLEEVNDV---IGIST------VSNSLLPAIV------------ELAEDL--LWRVRLAILEYIPQLAL---QLGVEF 514 (759)
T ss_pred HHHHHhccCc---ccchh------hhhhhhhhhh------------hhccch--hHHHHHHHHHHHHHHHH---hhhhHH
Confidence 00 00000 00000 0111111111 112332 23355556666666654 222444
Q ss_pred HhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHH
Q 006250 434 TESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIG 513 (654)
Q Consensus 434 ~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg 513 (654)
++..--+.+..-|.+...+++..|+.-+..++ +. |- ..-+....+.+++.+...++.-++....-+|.
T Consensus 515 ~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~---~~--------~G-~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~ 582 (759)
T KOG0211|consen 515 FDEKLAELLRTWLPDHVYSIREAAARNLPALV---ET--------FG-SEWARLEEIPKLLAMDLQDNYLVRMTTLFSIH 582 (759)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHH---HH--------hC-cchhHHHhhHHHHHHhcCcccchhhHHHHHHH
Confidence 44442222233344444567777776665554 21 22 11223456777777776655667777888888
Q ss_pred Hhhhcchhh--hhccHHHHHHHhccCCHHHHHHHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhccCCcchHHHH
Q 006250 514 NLARTFRAT--ETRIIGPLVNLLDEREPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIPA 591 (654)
Q Consensus 514 ~la~~~~~~--e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~A 591 (654)
.++.-+... .....|++.++..+..+.|+..++..|-++-.. ++. ...+.-..+.+..|....+..+...|
T Consensus 583 ~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~---L~~----~~~~~~v~pll~~L~~d~~~dvr~~a 655 (759)
T KOG0211|consen 583 ELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKL---LDE----SVRDEEVLPLLETLSSDQELDVRYRA 655 (759)
T ss_pred HHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhh---cch----HHHHHHHHHHHHHhccCcccchhHHH
Confidence 777655542 235789999999999999999999999888532 222 22333344555566665555555545
Q ss_pred HHHHHHH
Q 006250 592 LTLLCYI 598 (654)
Q Consensus 592 l~~L~~i 598 (654)
..+..-+
T Consensus 656 ~~a~~~i 662 (759)
T KOG0211|consen 656 ILAFGSI 662 (759)
T ss_pred HHHHHHH
Confidence 4444433
No 209
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=40.04 E-value=1.2e+02 Score=27.97 Aligned_cols=70 Identities=14% Similarity=0.068 Sum_probs=56.5
Q ss_pred HHHHcccccCCCHHHHHHHHHHHHHhccCCc-hhHHHHHhcCCHHHHHHhhccC---CHHHHHHHHHHHHHhcC
Q 006250 151 IWEQIAILHTGSMEEKCDAAASLVSLARDND-RYGKLIIEEGGVPPLLKLAYEG---ELEGQENAARAIGLLGR 220 (654)
Q Consensus 151 v~~lV~lL~s~~~~~k~~Aa~aL~~La~~~~-~~~~~I~e~G~Ip~LV~LL~s~---~~~~q~~Aa~AL~nLa~ 220 (654)
++.+-+.|+++++.++..|...|-.+.++.. .....|.....+..|++++... ++.++..+...|.+.+.
T Consensus 39 ~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 39 ARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 4445788999999999999999999987654 4778888878888899999763 57888888888887764
No 210
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.97 E-value=1e+03 Score=31.14 Aligned_cols=299 Identities=14% Similarity=0.113 Sum_probs=0.0
Q ss_pred hHHHHcccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHH-------HHHHHHHHhc---
Q 006250 150 LIWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQE-------NAARAIGLLG--- 219 (654)
Q Consensus 150 ~v~~lV~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~-------~Aa~AL~nLa--- 219 (654)
...+|+.-|.+..-.+|+.++-+|..|-.. +.-+.+.+. +|-+-..+-.--+++++ .++.+|+.|+
T Consensus 1040 Il~eLL~~lt~kewRVReasclAL~dLl~g--~~~~~~~e~--lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~ 1115 (1702)
T KOG0915|consen 1040 ILDELLVNLTSKEWRVREASCLALADLLQG--RPFDQVKEK--LPELWEAAFRVMDDIKESVREAADKAARALSKLCVRI 1115 (1702)
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHHcC--CChHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q ss_pred --CCcchHHHHHHcCchHHHHH--hhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHH
Q 006250 220 --RDAESVEQIVNAGVCSTFAK--NLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYA 295 (654)
Q Consensus 220 --~~~e~~~~iv~~GaIp~Lv~--LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~a 295 (654)
....-+..-+-.-.+|.|+. ++ |.-.+++..+..++..|+.+.+..-....-. .||.|+...+.-..+-..-.+
T Consensus 1116 ~d~~~~~~~~~~l~~iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~~lkP~~~~-LIp~ll~~~s~lE~~vLnYls 1193 (1702)
T KOG0915|consen 1116 CDVTNGAKGKEALDIILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKELKPHFPK-LIPLLLNAYSELEPQVLNYLS 1193 (1702)
T ss_pred cccCCcccHHHHHHHHHHHHhccCcc-cchHHHHHHHHHHHHHHHHhchhhhcchhhH-HHHHHHHHccccchHHHHHHH
Q ss_pred HHhhccchhhhHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccc
Q 006250 296 IASKQNISSLHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHM 375 (654)
Q Consensus 296 l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~ 375 (654)
.-..
T Consensus 1194 ~r~~---------------------------------------------------------------------------- 1197 (1702)
T KOG0915|consen 1194 LRLI---------------------------------------------------------------------------- 1197 (1702)
T ss_pred Hhhh----------------------------------------------------------------------------
Q ss_pred cccCCCCCCccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHh----hCcHHHHHHhhccCCh
Q 006250 376 YAMQPNHHNQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTE----SRALLCFAVLLEKGPE 451 (654)
Q Consensus 376 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e----~gaL~~L~~LL~~~~~ 451 (654)
..+.+..+.++..+++..-..-+ .+-|-..+| ...+|-+..+++++-+
T Consensus 1198 --------------------------~~e~ealDt~R~s~aksspmmeT--i~~ci~~iD~~vLeelip~l~el~R~sVg 1249 (1702)
T KOG0915|consen 1198 --------------------------NIETEALDTLRASAAKSSPMMET--INKCINYIDISVLEELIPRLTELVRGSVG 1249 (1702)
T ss_pred --------------------------hhHHHHHHHHHHhhhcCCcHHHH--HHHHHHhhhHHHHHHHHHHHHHHHhccCC
Q ss_pred -hHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhhhh-ccHHH
Q 006250 452 -DVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRATET-RIIGP 529 (654)
Q Consensus 452 -~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~e~-~~I~p 529 (654)
..|.-||--+.-++.--. ..-.|-+-..+..+.-.+++-++.++..++-|.|.|++.....+. ..|..
T Consensus 1250 l~Tkvg~A~fI~~L~~r~~----------~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~ 1319 (1702)
T KOG0915|consen 1250 LGTKVGCASFISLLVQRLG----------SEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIET 1319 (1702)
T ss_pred CCcchhHHHHHHHHHHHhc----------cccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q ss_pred HHHHhccCCHHHHHHHHHHHHhccccCCCCCHHHHHHHH
Q 006250 530 LVNLLDEREPEVIMEATVALNKFATTENYLSETHSKAII 568 (654)
Q Consensus 530 LV~lL~~~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv 568 (654)
++..+-..+....+-++..+.|++..-...-.+|+.+|+
T Consensus 1320 ~l~~~l~k~es~~siscatis~Ian~s~e~Lkn~asaIL 1358 (1702)
T KOG0915|consen 1320 LLADLLGKDESLKSISCATISNIANYSQEMLKNYASAIL 1358 (1702)
T ss_pred HHHHHhccCCCccchhHHHHHHHHHhhHHHHHhhHHHHH
No 211
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=38.89 E-value=31 Score=30.97 Aligned_cols=40 Identities=13% Similarity=0.270 Sum_probs=34.6
Q ss_pred HHHHHHHHhcCCcchHHHHHHcCchHHHHHhhcCCChhHH
Q 006250 210 NAARAIGLLGRDAESVEQIVNAGVCSTFAKNLKDGHMKVQ 249 (654)
Q Consensus 210 ~Aa~AL~nLa~~~e~~~~iv~~GaIp~Lv~LL~s~~~~vq 249 (654)
.....+..|+..|+-=..+++.|+++.|+.||.+.+.++-
T Consensus 65 ~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIa 104 (108)
T PF08216_consen 65 EEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIA 104 (108)
T ss_pred HHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCccee
Confidence 5667788999999888899999999999999998877653
No 212
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=38.12 E-value=1.5e+02 Score=32.40 Aligned_cols=87 Identities=18% Similarity=0.149 Sum_probs=61.3
Q ss_pred ccccc-CCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhc-cCCH-HHHHHHHHHHHHhcCCcchHHHHHHc
Q 006250 155 IAILH-TGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAY-EGEL-EGQENAARAIGLLGRDAESVEQIVNA 231 (654)
Q Consensus 155 V~lL~-s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~-s~~~-~~q~~Aa~AL~nLa~~~e~~~~iv~~ 231 (654)
+..|. +.+...|..++..|..-+.+ +..+..+...|.+..+++.+. .++. ..-..++.+++-++.+...-..+.+.
T Consensus 27 ld~l~~~~~~s~Rr~sll~La~K~~~-~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~~~~ 105 (361)
T PF07814_consen 27 LDGLESSSSSSVRRSSLLELASKCAD-PQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLLLDR 105 (361)
T ss_pred HhhcccCCCccHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhhhch
Confidence 44444 33557788888888888865 889999999999999999984 4443 44455555566666665555555566
Q ss_pred CchHHHHHhhc
Q 006250 232 GVCSTFAKNLK 242 (654)
Q Consensus 232 GaIp~Lv~LL~ 242 (654)
+....+++++.
T Consensus 106 ~~~~ll~~Ll~ 116 (361)
T PF07814_consen 106 DSLRLLLKLLK 116 (361)
T ss_pred hHHHHHHHHhc
Confidence 66777788887
No 213
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=37.61 E-value=1.1e+02 Score=28.18 Aligned_cols=71 Identities=10% Similarity=-0.045 Sum_probs=56.0
Q ss_pred hHHHHcccccCCCHHHHHHHHHHHHHhccC-CchhHHHHHhcCCHHHHHHhhccCC--HHHHHHHHHHHHHhcC
Q 006250 150 LIWEQIAILHTGSMEEKCDAAASLVSLARD-NDRYGKLIIEEGGVPPLLKLAYEGE--LEGQENAARAIGLLGR 220 (654)
Q Consensus 150 ~v~~lV~lL~s~~~~~k~~Aa~aL~~La~~-~~~~~~~I~e~G~Ip~LV~LL~s~~--~~~q~~Aa~AL~nLa~ 220 (654)
.++.+-+.|+++++.++..|...|-.+.++ .+.....|...+.+..|+.+++... +.++......+...+.
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 344457899999999999999999998765 3567888888899999999998654 3378877777776653
No 214
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=36.31 E-value=2.2e+02 Score=33.87 Aligned_cols=105 Identities=16% Similarity=0.235 Sum_probs=67.6
Q ss_pred CcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhh
Q 006250 437 RALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLA 516 (654)
Q Consensus 437 gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la 516 (654)
+.+-.+.+-.++++..|++++|.-|.-+.. ++.++-...| -...+.|..=+..-.+.|++.|+.+|..+-
T Consensus 85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d---~~~eidd~vf-------n~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ 154 (892)
T KOG2025|consen 85 GTFYHLLRGTESKDKKVRFRVLQILALLSD---ENAEIDDDVF-------NKLNEKLLIRLKDREPNVRIQAVLALSRLQ 154 (892)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHhc---cccccCHHHH-------HHHHHHHHHHHhccCchHHHHHHHHHHHHh
Confidence 556666777788899999999999877753 2211111111 122333333344446889999998888777
Q ss_pred hcchhhhhccHHHHHHHh-ccCCHHHHHHHHHHHHh
Q 006250 517 RTFRATETRIIGPLVNLL-DEREPEVIMEATVALNK 551 (654)
Q Consensus 517 ~~~~~~e~~~I~pLV~lL-~~~~~~v~~eAa~AL~~ 551 (654)
....+.+..+...++.++ .++.++|++.|.--|..
T Consensus 155 ~d~~dee~~v~n~l~~liqnDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 155 GDPKDEECPVVNLLKDLIQNDPSDEVRRAALSNISV 190 (892)
T ss_pred cCCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 655555556778888888 45678898877654443
No 215
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=35.58 E-value=55 Score=34.61 Aligned_cols=54 Identities=26% Similarity=0.339 Sum_probs=43.1
Q ss_pred hhHHHHcccccCCCHHHHHHHHHHHHHhccCC--------------chhHHHHHhcCCHHHHHHhhcc
Q 006250 149 CLIWEQIAILHTGSMEEKCDAAASLVSLARDN--------------DRYGKLIIEEGGVPPLLKLAYE 202 (654)
Q Consensus 149 ~~v~~lV~lL~s~~~~~k~~Aa~aL~~La~~~--------------~~~~~~I~e~G~Ip~LV~LL~s 202 (654)
.+|..++..|.+++...|..|+.+|..++... .+|...+.+.|++++|+.+|+.
T Consensus 60 ~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 60 DFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred HHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 45667789999999999999999999998542 1245566789999999999864
No 216
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=35.16 E-value=2.2e+02 Score=27.98 Aligned_cols=111 Identities=17% Similarity=0.241 Sum_probs=67.8
Q ss_pred hhccCChhHHHHHHHHHHHHHhhcccC------hHhhhhccCCCchHHHHHHH----HHHHHhhhcC-cchhhHHHHHHH
Q 006250 445 LLEKGPEDVKHFSAMALMEITAVAEKN------SDLRRSAFKPTSTAAKAVLE----QLLHIVEKAD-SDLLIPSIRAIG 513 (654)
Q Consensus 445 LL~~~~~~v~~~aa~AL~~Iaa~ae~~------~~lrr~a~~~~s~~~~~vv~----~L~~ll~~~~-~~l~~~~~~alg 513 (654)
++.++...+|..|+.++..+=.+.... ..-++..|.+-|......+- -|+..|+.+. ..+...+.++++
T Consensus 48 il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la 127 (182)
T PF13251_consen 48 ILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLA 127 (182)
T ss_pred HHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 356667777777777777765543221 01112246555543333333 3566666554 678889999999
Q ss_pred Hhhhcch--hhhhccHHH----HHHHhccCCHHHHHHHHHHHHhcccc
Q 006250 514 NLARTFR--ATETRIIGP----LVNLLDEREPEVIMEATVALNKFATT 555 (654)
Q Consensus 514 ~la~~~~--~~e~~~I~p----LV~lL~~~~~~v~~eAa~AL~~~a~~ 555 (654)
.+....+ .-+.+.+++ +-.++.+.|.+|+-.+..+++-+.+.
T Consensus 128 ~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 128 VLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 9887543 223344444 44456889999999888888776543
No 217
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=34.23 E-value=1.8e+02 Score=34.37 Aligned_cols=105 Identities=15% Similarity=0.158 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHhh-hcCcchhhHHHHHHHHhhhcchhhhhccHHHHHHHhccCCHHHHHHHHHHHHhccccCCCCCHHHH
Q 006250 486 AKAVLEQLLHIVE-KADSDLLIPSIRAIGNLARTFRATETRIIGPLVNLLDEREPEVIMEATVALNKFATTENYLSETHS 564 (654)
Q Consensus 486 ~~~vv~~L~~ll~-~~~~~l~~~~~~alg~la~~~~~~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a~~~n~~~~~~~ 564 (654)
|..-.+.|+..++ +++|.++..++-++|-++-.|.......-..|.+-|.+.+.+|++.+-..+..+.-.+. .
T Consensus 931 c~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de~t~yLyrrL~De~~~V~rtclmti~fLilagq------~ 1004 (1128)
T COG5098 931 CSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADEHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQ------L 1004 (1128)
T ss_pred HHHHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHccc------e
Confidence 4445678899998 67799999999999999999987655566788888899999999999999988853331 1
Q ss_pred HHHHHCCCHHHHHHhhccCCcchHHHHHHHHHHHH
Q 006250 565 KAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIA 599 (654)
Q Consensus 565 ~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~ia 599 (654)
| =.|-...+..+|...|..+--.|=..+.-+|
T Consensus 1005 K---VKGqlg~ma~~L~deda~Isdmar~fft~~a 1036 (1128)
T COG5098 1005 K---VKGQLGKMALLLTDEDAEISDMARHFFTQIA 1036 (1128)
T ss_pred e---eccchhhhHhhccCCcchHHHHHHHHHHHHH
Confidence 1 1344555666676666544333444444443
No 218
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=33.87 E-value=1.8e+02 Score=30.16 Aligned_cols=75 Identities=20% Similarity=0.242 Sum_probs=53.0
Q ss_pred cCCHHHHHHhhccCCHHHHHHHHHHHHHhcCC--c-c--hHHHHHHcCchHHHHHhhcCCC--hhHHHHHHHHHHHHhcC
Q 006250 190 EGGVPPLLKLAYEGELEGQENAARAIGLLGRD--A-E--SVEQIVNAGVCSTFAKNLKDGH--MKVQSVVAWAVSELASN 262 (654)
Q Consensus 190 ~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~--~-e--~~~~iv~~GaIp~Lv~LL~s~~--~~vq~~Aa~aL~nLa~~ 262 (654)
.-+.|+++++++.++.. +-.+.++ + + ..-+.+-.|-+++|-+++.+++ .-+|..|..+|..++..
T Consensus 72 ~~A~~~li~l~~~~~~~--------~~~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~ 143 (249)
T PF06685_consen 72 ERALPPLIRLFSQDDDF--------LEDLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHE 143 (249)
T ss_pred hhhHHHHHHHHcCCcch--------HHHHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHc
Confidence 45899999999866531 1122222 1 1 1223445678899999998875 45899999999999998
Q ss_pred ChhhHHHHHh
Q 006250 263 HPKCQDHFAQ 272 (654)
Q Consensus 263 ~~~~r~~i~~ 272 (654)
.+..|+.+++
T Consensus 144 ~~~~Re~vi~ 153 (249)
T PF06685_consen 144 GPISREEVIQ 153 (249)
T ss_pred CCCCHHHHHH
Confidence 8888988765
No 219
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=33.80 E-value=2e+02 Score=27.46 Aligned_cols=68 Identities=9% Similarity=0.050 Sum_probs=31.8
Q ss_pred CHHHHHHhhccCC-HHHHHHHHHHHHHhcCCcchHHHHHHcCchHHHHHhhcCCChhHHHHHHHHHHHH
Q 006250 192 GVPPLLKLAYEGE-LEGQENAARAIGLLGRDAESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSEL 259 (654)
Q Consensus 192 ~Ip~LV~LL~s~~-~~~q~~Aa~AL~nLa~~~e~~~~iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nL 259 (654)
++..|++.|++.+ ..-+..++.|+.++-.....+-.-.=.-.+|.+++.+++.+...++.-.+-|+.|
T Consensus 87 vi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 87 VINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADL 155 (160)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3455555555544 2233345555555543211111111123567777777655556666544444444
No 220
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=33.63 E-value=1.5e+02 Score=27.33 Aligned_cols=70 Identities=16% Similarity=0.021 Sum_probs=55.6
Q ss_pred CHHHHHHhhccCCHHHHHHHHHHHHHhcCC--cchHHHHHHcCchHHHHHhhcC---CChhHHHHHHHHHHHHhc
Q 006250 192 GVPPLLKLAYEGELEGQENAARAIGLLGRD--AESVEQIVNAGVCSTFAKNLKD---GHMKVQSVVAWAVSELAS 261 (654)
Q Consensus 192 ~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~--~e~~~~iv~~GaIp~Lv~LL~s---~~~~vq~~Aa~aL~nLa~ 261 (654)
++..|-+-|+++++.+|..|...|-.+..+ +.....+.....+..|++++.. .++.|+..+...+.+.+.
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 466677778889999999999888888865 4466777776777789999975 357899988888888876
No 221
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=32.78 E-value=72 Score=37.18 Aligned_cols=123 Identities=21% Similarity=0.157 Sum_probs=73.4
Q ss_pred hhhhhHHHHcccccC----CCHHHHHHHHHHHHHhccC---Cc------hhHHHHHhcCCHHHHHHhhc----cCCHHHH
Q 006250 146 PILCLIWEQIAILHT----GSMEEKCDAAASLVSLARD---ND------RYGKLIIEEGGVPPLLKLAY----EGELEGQ 208 (654)
Q Consensus 146 ~i~~~v~~lV~lL~s----~~~~~k~~Aa~aL~~La~~---~~------~~~~~I~e~G~Ip~LV~LL~----s~~~~~q 208 (654)
|...++..+..++++ .++..+..|.-+++.+... +. ......+..-.++.|...|. .++.+-+
T Consensus 428 Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 507 (618)
T PF01347_consen 428 PTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEK 507 (618)
T ss_dssp --HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHH
T ss_pred CCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHH
Confidence 334444444444442 3556777777777776531 10 01112223456788888776 3456778
Q ss_pred HHHHHHHHHhcCCcchHHHHHHcCchHHHHHhhcCC---ChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhcc
Q 006250 209 ENAARAIGLLGRDAESVEQIVNAGVCSTFAKNLKDG---HMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAF 285 (654)
Q Consensus 209 ~~Aa~AL~nLa~~~e~~~~iv~~GaIp~Lv~LL~s~---~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~ 285 (654)
.-+..||+|+.. ...++.|..++... +..+|..|+++|..++...++. +.+.|..++.+
T Consensus 508 ~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~--------v~~~l~~I~~n 569 (618)
T PF01347_consen 508 IVYLKALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK--------VREILLPIFMN 569 (618)
T ss_dssp HHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH--------HHHHHHHHHH-
T ss_pred HHHHHHhhccCC----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH--------HHHHHHHHhcC
Confidence 889999999965 23788888888766 5789999999999998765532 44567777765
Q ss_pred C
Q 006250 286 E 286 (654)
Q Consensus 286 ~ 286 (654)
.
T Consensus 570 ~ 570 (618)
T PF01347_consen 570 T 570 (618)
T ss_dssp T
T ss_pred C
Confidence 4
No 222
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=32.77 E-value=2e+02 Score=31.40 Aligned_cols=91 Identities=14% Similarity=0.091 Sum_probs=65.0
Q ss_pred HHHHHhhccC-CHHHHHHHHHHHHHhcCCcchHHHHHHcCchHHHHHhhcC-CChhHHHHHHHHHHHHhcCChhhHHHHH
Q 006250 194 PPLLKLAYEG-ELEGQENAARAIGLLGRDAESVEQIVNAGVCSTFAKNLKD-GHMKVQSVVAWAVSELASNHPKCQDHFA 271 (654)
Q Consensus 194 p~LV~LL~s~-~~~~q~~Aa~AL~nLa~~~e~~~~iv~~GaIp~Lv~LL~s-~~~~vq~~Aa~aL~nLa~~~~~~r~~i~ 271 (654)
..++.=|+++ +..++..++--|..-+.+++.++.+..+|.+..+++.+.. ++..+-..++.++..+-..+...-..+.
T Consensus 24 ~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~~ 103 (361)
T PF07814_consen 24 EYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLLL 103 (361)
T ss_pred HHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhhh
Confidence 3444445533 4678889988888888899999999999999999999954 4443555555555555443444555555
Q ss_pred hCCcHHHHHHhhc
Q 006250 272 QNNIVRFLVSHLA 284 (654)
Q Consensus 272 ~~g~I~~LV~LL~ 284 (654)
+.+....++.||.
T Consensus 104 ~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 104 DRDSLRLLLKLLK 116 (361)
T ss_pred chhHHHHHHHHhc
Confidence 6777888888887
No 223
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=32.66 E-value=1.2e+02 Score=28.52 Aligned_cols=70 Identities=13% Similarity=0.118 Sum_probs=56.6
Q ss_pred CHHHHHHhhccCCHHHHHHHHHHHHHhcCC--cchHHHHHHcCchHHHHHhhcC-CChhHHHHHHHHHHHHhc
Q 006250 192 GVPPLLKLAYEGELEGQENAARAIGLLGRD--AESVEQIVNAGVCSTFAKNLKD-GHMKVQSVVAWAVSELAS 261 (654)
Q Consensus 192 ~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~--~e~~~~iv~~GaIp~Lv~LL~s-~~~~vq~~Aa~aL~nLa~ 261 (654)
++..|.+-|.++++.+|..|...|-.+..+ ..-...|.....+..|++++.. .+..|+......|...+.
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 455666777888899999888888888854 4567788888899999999987 678899988888888875
No 224
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=32.40 E-value=1.6e+02 Score=31.88 Aligned_cols=112 Identities=11% Similarity=0.115 Sum_probs=84.4
Q ss_pred hHHHHcccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhc---CCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcchHH
Q 006250 150 LIWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEE---GGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVE 226 (654)
Q Consensus 150 ~v~~lV~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~---G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~ 226 (654)
.+|.+....+.++-++-.+|..++..+-..+.......... ..+...-.||.+++-..+..+..-|+.|-.+..|..
T Consensus 165 ~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~ 244 (335)
T PF08569_consen 165 CFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFN 244 (335)
T ss_dssp GGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHH
T ss_pred HHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHH
Confidence 47888999999999999999999999754435444444433 345677889999999999999999999999887765
Q ss_pred HHH----HcCchHHHHHhhcCCChhHHHHHHHHHHHHhc
Q 006250 227 QIV----NAGVCSTFAKNLKDGHMKVQSVVAWAVSELAS 261 (654)
Q Consensus 227 ~iv----~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~ 261 (654)
.|. +..-+-.+..+|++.+..+|-.|-...--...
T Consensus 245 vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVA 283 (335)
T PF08569_consen 245 VMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVA 283 (335)
T ss_dssp HHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHh
Confidence 443 44457777888899999999998877766655
No 225
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.14 E-value=1.9e+02 Score=32.83 Aligned_cols=134 Identities=12% Similarity=0.088 Sum_probs=79.2
Q ss_pred hHHHHcccccCCCHHHHHHHHHHHHHhccCCc-hhHHHHHhcCCHHHHHHhhc-cCCHHHHHHHHHHHHHhcCCcchHHH
Q 006250 150 LIWEQIAILHTGSMEEKCDAAASLVSLARDND-RYGKLIIEEGGVPPLLKLAY-EGELEGQENAARAIGLLGRDAESVEQ 227 (654)
Q Consensus 150 ~v~~lV~lL~s~~~~~k~~Aa~aL~~La~~~~-~~~~~I~e~G~Ip~LV~LL~-s~~~~~q~~Aa~AL~nLa~~~e~~~~ 227 (654)
.+-.+-....+++...|..|++.|++.+..-| +.+... .-.+..++.=|. ..+.+++.+|..+|..+.....+..
T Consensus 259 ~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~--~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~- 335 (533)
T KOG2032|consen 259 VLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHK--TTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDD- 335 (533)
T ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhH--HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcc-
Confidence 34444566677888889999999999986523 222211 112333444333 3458899999999887765433222
Q ss_pred HHHcCchH---HHHHhhcCCChhHHHHHHHHHHHHhcC-ChhhHHHHHh--CCcHHHHHHhhccCc
Q 006250 228 IVNAGVCS---TFAKNLKDGHMKVQSVVAWAVSELASN-HPKCQDHFAQ--NNIVRFLVSHLAFET 287 (654)
Q Consensus 228 iv~~GaIp---~Lv~LL~s~~~~vq~~Aa~aL~nLa~~-~~~~r~~i~~--~g~I~~LV~LL~~~~ 287 (654)
++.+-++ .+..+..+.+++++..+..+.+.|+.- ....++.+.+ -+...+|+-.|.+.+
T Consensus 336 -l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~ 400 (533)
T KOG2032|consen 336 -LESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPN 400 (533)
T ss_pred -hhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCC
Confidence 1122223 345567788899999888887777642 2244555553 223345555565543
No 226
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=32.08 E-value=1.4e+02 Score=27.61 Aligned_cols=45 Identities=22% Similarity=0.111 Sum_probs=29.3
Q ss_pred HHHHHhhccCCcchHHHHHHHHHHHHhCCCc--hHHHHhhhhhHHHH
Q 006250 574 KHLIQLVYFGEQMIQIPALTLLCYIAIKQPE--SKTLAQEEVLIVLE 618 (654)
Q Consensus 574 ~~Lv~LL~~~~~~~q~~Al~~L~~ia~~~~~--~~~l~~~~~l~~l~ 618 (654)
+.|-.=|.++++.+|..|+.+|..++.|.|. ..+++..+.+..|.
T Consensus 40 r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~ 86 (133)
T smart00288 40 RLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELV 86 (133)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHH
Confidence 3344445566777777888888888777766 34566666666555
No 227
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=30.92 E-value=72 Score=33.74 Aligned_cols=54 Identities=19% Similarity=0.153 Sum_probs=43.3
Q ss_pred cCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCc---------------chHHHHHHcCchHHHHHhhcC
Q 006250 190 EGGVPPLLKLAYEGELEGQENAARAIGLLGRDA---------------ESVEQIVNAGVCSTFAKNLKD 243 (654)
Q Consensus 190 ~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~---------------e~~~~iv~~GaIp~Lv~LL~s 243 (654)
...|..++.-|.+++...+..|+.+|..++.|. .|...+.+.|++++|+.+|+.
T Consensus 59 ~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 59 KDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 345667888888888888899999999998661 155678899999999999964
No 228
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=30.43 E-value=1.5e+02 Score=27.83 Aligned_cols=70 Identities=9% Similarity=-0.031 Sum_probs=55.3
Q ss_pred CHHHHHHhhccCCHHHHHHHHHHHHHhcCC--cchHHHHHHcCchHHHHHhhcC------CChhHHHHHHHHHHHHhc
Q 006250 192 GVPPLLKLAYEGELEGQENAARAIGLLGRD--AESVEQIVNAGVCSTFAKNLKD------GHMKVQSVVAWAVSELAS 261 (654)
Q Consensus 192 ~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~--~e~~~~iv~~GaIp~Lv~LL~s------~~~~vq~~Aa~aL~nLa~ 261 (654)
++..|.+-|.++++.++..|...|-.+..+ +.....|.....+.-|++++.. .+..|+......+...+.
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 456677778888888888888888887754 5677888888899999999963 457899888888887775
No 229
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=29.14 E-value=1.1e+02 Score=37.01 Aligned_cols=70 Identities=17% Similarity=0.018 Sum_probs=52.3
Q ss_pred CHHHHHHHHHHHHHhccCCchhHHHH-----------------------------------HhcCCHHHHHHhhccCC--
Q 006250 162 SMEEKCDAAASLVSLARDNDRYGKLI-----------------------------------IEEGGVPPLLKLAYEGE-- 204 (654)
Q Consensus 162 ~~~~k~~Aa~aL~~La~~~~~~~~~I-----------------------------------~e~G~Ip~LV~LL~s~~-- 204 (654)
+++.+..|..+|-|+....+.+|..+ ...+||..|++||....
T Consensus 675 Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~ 754 (1516)
T KOG1832|consen 675 DPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPP 754 (1516)
T ss_pred CHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCC
Confidence 67788888888877755433444333 35689999999998543
Q ss_pred ---HHHHHHHHHHHHHhcCCcchHHHHHHc
Q 006250 205 ---LEGQENAARAIGLLGRDAESVEQIVNA 231 (654)
Q Consensus 205 ---~~~q~~Aa~AL~nLa~~~e~~~~iv~~ 231 (654)
..++.-|+.+|.-|+++++.++.+.+.
T Consensus 755 t~aD~IRalAc~~L~GLaR~~tVrQIltKL 784 (1516)
T KOG1832|consen 755 TTADCIRALACRVLLGLARDDTVRQILTKL 784 (1516)
T ss_pred CcHHHHHHHHHHHHhccccCcHHHHHHHhC
Confidence 457889999999999999888876543
No 230
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=29.00 E-value=3.1e+02 Score=26.26 Aligned_cols=73 Identities=16% Similarity=0.230 Sum_probs=48.7
Q ss_pred HHHHHhhccCC-hhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhh
Q 006250 440 LCFAVLLEKGP-EDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLAR 517 (654)
Q Consensus 440 ~~L~~LL~~~~-~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~ 517 (654)
..+..+|++.+ ..+++.++.+|..|-.....-+++.|-... |-....+..++.+++. +.....+..+|..+=.
T Consensus 70 ~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~t---p~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 70 RALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTREIAT---PNLPKFIQSLLQLLQD--SSCPETALDALATLLP 143 (165)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhh---ccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence 34566677655 478999999999998877778887774333 3345567777777764 4455556666655554
No 231
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=28.70 E-value=1.3e+03 Score=29.12 Aligned_cols=111 Identities=14% Similarity=0.116 Sum_probs=71.0
Q ss_pred hhhhHHHHcccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCC-HHHHHHHHHHHHHhcCCcchH
Q 006250 147 ILCLIWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGE-LEGQENAARAIGLLGRDAESV 225 (654)
Q Consensus 147 i~~~v~~lV~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~-~~~q~~Aa~AL~nLa~~~e~~ 225 (654)
+.+.+-.|...|++.+..++-.||.-++.++...| +..+ + -+|...+.++...+ +..=..|+-||..|+.-.--.
T Consensus 339 vE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~La-d-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLl 414 (1133)
T KOG1943|consen 339 VEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PELA-D-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLL 414 (1133)
T ss_pred HHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HHHH-H-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcc
Confidence 34567777889999999999999999999987655 2222 1 24555566555443 555668889999998531100
Q ss_pred HHHHHcCchHHHHHhhc--------CCChhHHHHHHHHHHHHhcC
Q 006250 226 EQIVNAGVCSTFAKNLK--------DGHMKVQSVVAWAVSELASN 262 (654)
Q Consensus 226 ~~iv~~GaIp~Lv~LL~--------s~~~~vq~~Aa~aL~nLa~~ 262 (654)
.... ...+|.+++-|. +....|+..|+-.++.++..
T Consensus 415 ps~l-~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Ra 458 (1133)
T KOG1943|consen 415 PSLL-EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARA 458 (1133)
T ss_pred hHHH-HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhc
Confidence 0000 124666776663 22245888888787777763
No 232
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=28.54 E-value=1.4e+02 Score=30.58 Aligned_cols=97 Identities=13% Similarity=0.194 Sum_probs=71.5
Q ss_pred HHHHHHHHHHhccCCchhHHHHHhcCC---HHHHHHhhccCC--HHHHHHHHHHHHHhcCCc--chHHHHHHcCchHHHH
Q 006250 166 KCDAAASLVSLARDNDRYGKLIIEEGG---VPPLLKLAYEGE--LEGQENAARAIGLLGRDA--ESVEQIVNAGVCSTFA 238 (654)
Q Consensus 166 k~~Aa~aL~~La~~~~~~~~~I~e~G~---Ip~LV~LL~s~~--~~~q~~Aa~AL~nLa~~~--e~~~~iv~~GaIp~Lv 238 (654)
-.+|...|--++++ ++.++..+++-. +=|++...++.. .-++-.+.+.++.|..++ +....+.....||...
T Consensus 117 vcnaL~lLQclaSh-Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL 195 (315)
T COG5209 117 VCNALNLLQCLASH-PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL 195 (315)
T ss_pred HHHHHHHHHHHhcC-cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence 34677777777876 888888877643 223333333322 456778889999999764 4456777888999999
Q ss_pred HhhcCCChhHHHHHHHHHHHHhcCC
Q 006250 239 KNLKDGHMKVQSVVAWAVSELASNH 263 (654)
Q Consensus 239 ~LL~s~~~~vq~~Aa~aL~nLa~~~ 263 (654)
+++..+++-.|..|+..++-+-.++
T Consensus 196 rIme~gSElSktvaifI~qkil~dD 220 (315)
T COG5209 196 RIMELGSELSKTVAIFIFQKILGDD 220 (315)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhccc
Confidence 9999999999999999998888754
No 233
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=28.23 E-value=2.9e+02 Score=32.18 Aligned_cols=104 Identities=15% Similarity=0.168 Sum_probs=66.3
Q ss_pred CcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhh
Q 006250 437 RALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLA 516 (654)
Q Consensus 437 gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la 516 (654)
|.+-.+.+-+++++..|+++++.-|.-+...-.. +-. -.....++.|.+=+-.-.+.+++.|+.+|..+-
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e---IDe-------~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Q 160 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE---IDE-------VLANGLLEKLSERLFDREKAVRREAVKVLCYYQ 160 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch---HHH-------HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 5566666778899999999999988776543321 000 111223333333333334668888888877777
Q ss_pred hcchhhhhccHHHHHHHhcc-CCHHHHHHHHHHHH
Q 006250 517 RTFRATETRIIGPLVNLLDE-REPEVIMEATVALN 550 (654)
Q Consensus 517 ~~~~~~e~~~I~pLV~lL~~-~~~~v~~eAa~AL~ 550 (654)
....+.++++...|+.++++ +..+|++.|..-|.
T Consensus 161 e~~~neen~~~n~l~~~vqnDPS~EVRr~allni~ 195 (885)
T COG5218 161 EMELNEENRIVNLLKDIVQNDPSDEVRRLALLNIS 195 (885)
T ss_pred hccCChHHHHHHHHHHHHhcCcHHHHHHHHHHHee
Confidence 66666677788888888854 56678887765443
No 234
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.98 E-value=3.8e+02 Score=28.81 Aligned_cols=110 Identities=17% Similarity=0.121 Sum_probs=75.3
Q ss_pred HHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhhh----hccHHHHHHHhccCCHHHHHHHHHHHHhccccCCCCCHH
Q 006250 487 KAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRATE----TRIIGPLVNLLDEREPEVIMEATVALNKFATTENYLSET 562 (654)
Q Consensus 487 ~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~e----~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a~~~n~~~~~ 562 (654)
.+++.+.++.+.+.+.+.+.-+...|-.|+.+....- ..+|..+|+=+++.-..|.+.|+.+++.+.+.=| +
T Consensus 87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln----~ 162 (334)
T KOG2933|consen 87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLN----N 162 (334)
T ss_pred HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH----H
Confidence 4577888888998889999999999998887655321 1368889999999999999999999988764322 2
Q ss_pred HHHHHHHCCCHHHHHHhhccCCc--c-hHHHHHHHHHHHHhCCCc
Q 006250 563 HSKAIINAGGVKHLIQLVYFGEQ--M-IQIPALTLLCYIAIKQPE 604 (654)
Q Consensus 563 ~~~~Iv~~ggi~~Lv~LL~~~~~--~-~q~~Al~~L~~ia~~~~~ 604 (654)
++... .-..+++||..+++ . +...|-.+|..+.-|+.-
T Consensus 163 ~i~~~----ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp 203 (334)
T KOG2933|consen 163 SIDQE----LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP 203 (334)
T ss_pred HHHHH----HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh
Confidence 22221 11345566665433 2 344577777777666653
No 235
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=26.73 E-value=1.5e+02 Score=30.54 Aligned_cols=99 Identities=18% Similarity=0.219 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHhhC-cHHHHHHhhccC----ChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchH
Q 006250 411 MKAMAARALWKLSKGNLSICRNLTESR-ALLCFAVLLEKG----PEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTA 485 (654)
Q Consensus 411 lk~~Aa~AL~~La~gn~~~~~~i~e~g-aL~~L~~LL~~~----~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~ 485 (654)
.+-.+.|.+.|+-.+.......+.... .+...+..+... +..+|.-+|..+.|++....++.. ....
T Consensus 126 ~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~--------~~~~ 197 (268)
T PF08324_consen 126 NQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRS--------DEEW 197 (268)
T ss_dssp HHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS---------CCH
T ss_pred HHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCC--------ChHH
Confidence 556899999999875444333333333 344444444444 689999999999999765443221 1112
Q ss_pred HHHHHHHHHHHhhh--cCcchhhHHHHHHHHhhh
Q 006250 486 AKAVLEQLLHIVEK--ADSDLLIPSIRAIGNLAR 517 (654)
Q Consensus 486 ~~~vv~~L~~ll~~--~~~~l~~~~~~alg~la~ 517 (654)
...++..+..++.. .|+|....+..|+|+|..
T Consensus 198 ~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~ 231 (268)
T PF08324_consen 198 QSELLSSIIEVLSREESDEEALYRLLVALGTLLS 231 (268)
T ss_dssp HHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhc
Confidence 22355556663322 457777778888888773
No 236
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=26.67 E-value=8.6e+02 Score=29.76 Aligned_cols=126 Identities=13% Similarity=0.165 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHH
Q 006250 410 QMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAV 489 (654)
Q Consensus 410 ~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~v 489 (654)
.+...|+-.|.-|+++....++..+. +.+++|..-+......++...-.++-.+.. ... .-..
T Consensus 310 ~v~~~aa~~l~~ia~~lr~~~~~~~~-~v~p~lld~lkekk~~l~d~l~~~~d~~~n-s~~---------------l~~~ 372 (815)
T KOG1820|consen 310 NVVMLAAQILELIAKKLRPLFRKYAK-NVFPSLLDRLKEKKSELRDALLKALDAILN-STP---------------LSKM 372 (815)
T ss_pred hHHHHHHHHHHHHHHhcchhhHHHHH-hhcchHHHHhhhccHHHHHHHHHHHHHHHh-ccc---------------HHHH
Confidence 46677888888888887666554443 677888777777777666554444443332 110 1224
Q ss_pred HHHHHHHhhhcCcchhhHHHHHHHHhhhcch-h-----hhhccHHHHHHHhccCCHHHHHHHHHHHHhc
Q 006250 490 LEQLLHIVEKADSDLLIPSIRAIGNLARTFR-A-----TETRIIGPLVNLLDEREPEVIMEATVALNKF 552 (654)
Q Consensus 490 v~~L~~ll~~~~~~l~~~~~~alg~la~~~~-~-----~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~ 552 (654)
.+.+...+++.++..+..|...+..+-+... . .-...+|.++..-.+++.+|++.|..+++-.
T Consensus 373 ~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v 441 (815)
T KOG1820|consen 373 SEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAV 441 (815)
T ss_pred HHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHH
Confidence 4667777888888888888777766665333 1 1124678888888999999999888777654
No 237
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=26.52 E-value=1.4e+02 Score=28.72 Aligned_cols=58 Identities=9% Similarity=0.046 Sum_probs=44.8
Q ss_pred CCHHHHHHHHHHHHHhccCCchhHHHHHh-cCCHHHHHHhhccCCHHHHHHHHHHHHHhc
Q 006250 161 GSMEEKCDAAASLVSLARDNDRYGKLIIE-EGGVPPLLKLAYEGELEGQENAARAIGLLG 219 (654)
Q Consensus 161 ~~~~~k~~Aa~aL~~La~~~~~~~~~I~e-~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa 219 (654)
.+......+..+|..+... ..-...+++ .++|..|+..|.+.+..++..+...|..+|
T Consensus 128 ~~~~~~~~~l~Clkal~n~-~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 128 EDIDIEHECLRCLKALMNT-KYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TCHHHHHHHHHHHHHHTSS-HHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHcc-HHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 4556777889999999854 544566665 589999999999999999999998888775
No 238
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=26.05 E-value=3.1e+02 Score=25.82 Aligned_cols=26 Identities=23% Similarity=0.066 Sum_probs=18.3
Q ss_pred CHHHHHHhhccCCHHHHHHHHHHHHH
Q 006250 192 GVPPLLKLAYEGELEGQENAARAIGL 217 (654)
Q Consensus 192 ~Ip~LV~LL~s~~~~~q~~Aa~AL~n 217 (654)
.-..+..||.++++++|..|..||..
T Consensus 18 l~~~~~~LL~~~d~~vQklAL~cll~ 43 (141)
T PF07539_consen 18 LYDALLRLLSSRDPEVQKLALDCLLT 43 (141)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 34456677777778888877777765
No 239
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=25.44 E-value=1.3e+02 Score=36.36 Aligned_cols=57 Identities=12% Similarity=0.068 Sum_probs=45.6
Q ss_pred HHHHcCchHHHHHhhcC-----CChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhc
Q 006250 227 QIVNAGVCSTFAKNLKD-----GHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLA 284 (654)
Q Consensus 227 ~iv~~GaIp~Lv~LL~s-----~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~ 284 (654)
.+.+.||+..|+.+|.+ +..++-......|..++. -+.+|+.+++.|+++.|++.|.
T Consensus 112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~ 173 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLN 173 (802)
T ss_pred HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHH
Confidence 34568999999999975 223455556777777787 7899999999999999999985
No 240
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=25.13 E-value=3.1e+02 Score=29.42 Aligned_cols=65 Identities=11% Similarity=0.261 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHcC--chHHHHHhhcCCC---hhHHHHHHHHHHHHhcCChhhHHHHH
Q 006250 207 GQENAARAIGLLGRDAESVEQIVNAG--VCSTFAKNLKDGH---MKVQSVVAWAVSELASNHPKCQDHFA 271 (654)
Q Consensus 207 ~q~~Aa~AL~nLa~~~e~~~~iv~~G--aIp~Lv~LL~s~~---~~vq~~Aa~aL~nLa~~~~~~r~~i~ 271 (654)
++..|...|..+...++....+...+ .+.-|+++++.++ ..+|..|..+|.-|+.+...+.+.+.
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~ 307 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLR 307 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 44455555555555566677777777 9999999998653 57999999999999986655555443
No 241
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=25.02 E-value=2.5e+02 Score=30.15 Aligned_cols=57 Identities=23% Similarity=0.291 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhccCCchhHHHHHhcC--CHHHHHHhhccCC---HHHHHHHHHHHHHhcCCc
Q 006250 165 EKCDAAASLVSLARDNDRYGKLIIEEG--GVPPLLKLAYEGE---LEGQENAARAIGLLGRDA 222 (654)
Q Consensus 165 ~k~~Aa~aL~~La~~~~~~~~~I~e~G--~Ip~LV~LL~s~~---~~~q~~Aa~AL~nLa~~~ 222 (654)
+|..|...|..+..+ +.....+.+.+ .+.-|++|++.++ ..+|..|..+|..|+.+.
T Consensus 238 iRllAi~~l~~~~~~-~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~ 299 (329)
T PF06012_consen 238 IRLLAIANLVYIHPE-SQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKR 299 (329)
T ss_pred HHHHHHHHHHhhCCC-HHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 445555666555533 56677777776 9999999998664 678999999999999864
No 242
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=24.47 E-value=4.2e+02 Score=27.29 Aligned_cols=107 Identities=11% Similarity=0.099 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHhccCCch-hHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcchHHHHH----HcCch---
Q 006250 163 MEEKCDAAASLVSLARDNDR-YGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIV----NAGVC--- 234 (654)
Q Consensus 163 ~~~k~~Aa~aL~~La~~~~~-~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~~iv----~~GaI--- 234 (654)
.-.|..+...++.|.++++. ..+.......||.+++.++.|+.-.|.-|+..+..+-.++..-+.+- .--+|
T Consensus 160 EyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~v 239 (315)
T COG5209 160 EYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLV 239 (315)
T ss_pred ceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHH
Confidence 45677899999999876544 46777778999999999999999899999999888877765322221 11111
Q ss_pred -HHHHH-hhcCCChhHHHHHHHHHHHHhcCChhhHHHH
Q 006250 235 -STFAK-NLKDGHMKVQSVVAWAVSELASNHPKCQDHF 270 (654)
Q Consensus 235 -p~Lv~-LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i 270 (654)
..++. +.+.++..+-..+..+-..|+. +|..|..+
T Consensus 240 ln~mv~qlVs~~~~RLlKh~iRcYlRLsd-~p~aR~lL 276 (315)
T COG5209 240 LNSMVSQLVSLGSTRLLKHAIRCYLRLSD-KPHARALL 276 (315)
T ss_pred HHHHHHHHhhccchhHHHHHHHHheeecC-CHhHHHHH
Confidence 12221 2234555666666666666665 55555443
No 243
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.24 E-value=1.6e+02 Score=33.43 Aligned_cols=97 Identities=22% Similarity=0.118 Sum_probs=62.0
Q ss_pred HhccCCHHHHHHHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhccCCcchHHHHHHHHHHHHhCCCch--HHHHh
Q 006250 533 LLDEREPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIAIKQPES--KTLAQ 610 (654)
Q Consensus 533 lL~~~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~ia~~~~~~--~~l~~ 610 (654)
.|.+.+..+-.+.|..|..- .+ +.+ .+++.|-+.+.+..+.+|..||.+|..++.|+|.+ ..+++
T Consensus 13 ~l~~pDWa~NleIcD~IN~~--~~------~~~-----eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~ 79 (470)
T KOG1087|consen 13 SLAEPDWALNLEICDLINST--EG------GPK-----EAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVAS 79 (470)
T ss_pred cccCccHHHHHHHHHHHhcC--cc------CcH-----HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34555555556655554332 11 112 23455666677777789999999999999999984 57888
Q ss_pred hhhhHHHHhhhhhhhhhcCccHHhHHHHHHHHHHhhh
Q 006250 611 EEVLIVLEWSFKQAHLVAEPSIEALLPEAKSTLATYQ 647 (654)
Q Consensus 611 ~~~l~~l~~~~~~~~~~q~~~~~~l~~~a~~~l~~y~ 647 (654)
.++|.-+++..+.. +....+-.|++..|+.++
T Consensus 80 k~fL~emVk~~k~~-----~~~~~Vr~kiL~LI~~W~ 111 (470)
T KOG1087|consen 80 KEFLNEMVKRPKNK-----PRDLKVREKILELIDTWQ 111 (470)
T ss_pred HHHHHHHHhccccC-----CcchhHHHHHHHHHHHHH
Confidence 88888887644432 134456666666666654
No 244
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=24.22 E-value=9.3e+02 Score=26.06 Aligned_cols=168 Identities=12% Similarity=0.108 Sum_probs=102.7
Q ss_pred HHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCc-hHHHHHHHH----HHHHhh-hcCcc
Q 006250 430 CRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTS-TAAKAVLEQ----LLHIVE-KADSD 503 (654)
Q Consensus 430 ~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s-~~~~~vv~~----L~~ll~-~~~~~ 503 (654)
...+...+.+..|+..|..-+-+.++.++.-..++-.....+ .+ |....++.+ |..++. .++++
T Consensus 69 a~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~----------~~~p~v~yl~~~~peil~~L~~gy~~~d 138 (335)
T PF08569_consen 69 AQEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGS----------RSPPTVDYLERHRPEILDILLRGYENPD 138 (335)
T ss_dssp HHHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTT----------B--HHHHHHHT--THHHHHHHHGGGSTT
T ss_pred HHHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCC----------CCCchHHHHHhCCHHHHHHHHHHhcCcc
Confidence 345566789999999999999999999999888875432211 11 333333322 222332 23466
Q ss_pred hhhHHHHHHHHhhh----------------------------------cchh---------------hhhccHHHHHHHh
Q 006250 504 LLIPSIRAIGNLAR----------------------------------TFRA---------------TETRIIGPLVNLL 534 (654)
Q Consensus 504 l~~~~~~alg~la~----------------------------------~~~~---------------~e~~~I~pLV~lL 534 (654)
+-.+|..-|-.+.+ ||.. .-...+.-.-.||
T Consensus 139 ial~~g~mlRec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll 218 (335)
T PF08569_consen 139 IALNCGDMLRECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLL 218 (335)
T ss_dssp THHHHHHHHHHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHC
T ss_pred ccchHHHHHHHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHc
Confidence 66666555555554 1110 0013456777788
Q ss_pred ccCCHHHHHHHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhccCCcchHHHHHHHHHHHHhCCCchHHH
Q 006250 535 DEREPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIAIKQPESKTL 608 (654)
Q Consensus 535 ~~~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~ia~~~~~~~~l 608 (654)
.+++.-+++.+.--|+.+-.+... ..-..++|.+..-++.++.||++....+|.+|....=-.+.|...+.++
T Consensus 219 ~s~NYvtkrqslkLL~ellldr~n-~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I 291 (335)
T PF08569_consen 219 ESSNYVTKRQSLKLLGELLLDRSN-FNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPI 291 (335)
T ss_dssp T-SSHHHHHHHHHHHHHHHHSGGG-HHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHH
T ss_pred cCCCeEeehhhHHHHHHHHHchhH-HHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHH
Confidence 888888888899888888633210 1122466667778999999999988889999999887777776666555
No 245
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=24.17 E-value=3.6e+02 Score=32.02 Aligned_cols=133 Identities=14% Similarity=0.061 Sum_probs=87.5
Q ss_pred cccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHh-hccCCHHHHHHHHHHHHHhcCCcchHHHHHHcCc
Q 006250 155 IAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKL-AYEGELEGQENAARAIGLLGRDAESVEQIVNAGV 233 (654)
Q Consensus 155 V~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~L-L~s~~~~~q~~Aa~AL~nLa~~~e~~~~iv~~Ga 233 (654)
...+++.+..+|+.+...+...+..=| -..++.-.+|.|-++ +++.+..++.+++-|+..+.. .-.+..+++ -
T Consensus 395 ~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q-~lD~~~v~d--~ 468 (700)
T KOG2137|consen 395 YRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ-RLDKAAVLD--E 468 (700)
T ss_pred HHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH-HHHHHHhHH--H
Confidence 556667788888888888888774322 233444567777775 345568899999999988881 112223332 3
Q ss_pred hHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCc--hhhhhHH
Q 006250 234 CSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFET--VQEHSKY 294 (654)
Q Consensus 234 Ip~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~--~~~~~~~ 294 (654)
++++.+..+..++.+......+..++....+.. ..+.-+.++|.++.+...+. ..+..++
T Consensus 469 ~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~L~~~Qy~~~ 530 (700)
T KOG2137|consen 469 LLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPSLNGEQYNKY 530 (700)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhcccccHHHHHHH
Confidence 566677777888888887777777777744332 45555679999998887663 3444433
No 246
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=23.74 E-value=2.2e+02 Score=26.70 Aligned_cols=68 Identities=10% Similarity=0.004 Sum_probs=53.7
Q ss_pred HHHcccccCCCHHHHHHHHHHHHHhccCC-chhHHHHHhcCCHHHHHHhhcc------CCHHHHHHHHHHHHHhc
Q 006250 152 WEQIAILHTGSMEEKCDAAASLVSLARDN-DRYGKLIIEEGGVPPLLKLAYE------GELEGQENAARAIGLLG 219 (654)
Q Consensus 152 ~~lV~lL~s~~~~~k~~Aa~aL~~La~~~-~~~~~~I~e~G~Ip~LV~LL~s------~~~~~q~~Aa~AL~nLa 219 (654)
..+.+.|+++++.++..|...|-.+.++. +.....|...+.+.-|++++.. .+..++......|...+
T Consensus 41 rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 41 RLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 33478899999999999999998887543 5678889888999999999963 34778887777776655
No 247
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=23.43 E-value=2.4e+02 Score=33.86 Aligned_cols=93 Identities=19% Similarity=0.129 Sum_probs=66.0
Q ss_pred HHHHhccCCchhHHHHHhcCCHHHHHHhhccCC-HHHHHHHHHHHHHhcCCcchHHHHHHcCch--HHHHHhhcCCCh-h
Q 006250 172 SLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGE-LEGQENAARAIGLLGRDAESVEQIVNAGVC--STFAKNLKDGHM-K 247 (654)
Q Consensus 172 aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~-~~~q~~Aa~AL~nLa~~~e~~~~iv~~GaI--p~Lv~LL~s~~~-~ 247 (654)
+|.+...+++++.+.+++.||+..+..+++.-+ .+.+......+.|++...+.+......--+ ..+-.++..-+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 788888888999999999999999999999654 788999999999999764433222111111 233335544433 6
Q ss_pred HHHHHHHHHHHHhcCCh
Q 006250 248 VQSVVAWAVSELASNHP 264 (654)
Q Consensus 248 vq~~Aa~aL~nLa~~~~ 264 (654)
.-..++..|+.+..+++
T Consensus 574 rsY~~~siLa~ll~~~~ 590 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSE 590 (699)
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 66778888888776443
No 248
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=23.02 E-value=1.7e+02 Score=27.14 Aligned_cols=70 Identities=14% Similarity=0.067 Sum_probs=54.5
Q ss_pred hHHHHcccccCCCHHHHHHHHHHHHHhccCC-chhHHHHHhcCCHHHHHHhhccCC-HH---HHHHHHHHHHHhc
Q 006250 150 LIWEQIAILHTGSMEEKCDAAASLVSLARDN-DRYGKLIIEEGGVPPLLKLAYEGE-LE---GQENAARAIGLLG 219 (654)
Q Consensus 150 ~v~~lV~lL~s~~~~~k~~Aa~aL~~La~~~-~~~~~~I~e~G~Ip~LV~LL~s~~-~~---~q~~Aa~AL~nLa 219 (654)
.++.+.+.|+++++.++..|...|-.+.++. +.....|....-+..|+.++.+.. .. +++.+...|...+
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 3444578999999999999999999888664 567888888888999999887654 33 7877777666655
No 249
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=22.88 E-value=2.6e+02 Score=24.72 Aligned_cols=73 Identities=18% Similarity=0.228 Sum_probs=42.7
Q ss_pred HHHHHHhhccCCcchHHHHHHHHHHHHhCCCch--HHHHhhhhhHHHHhhhhhhhhhcCccHHhHHHHHHHHHHhh
Q 006250 573 VKHLIQLVYFGEQMIQIPALTLLCYIAIKQPES--KTLAQEEVLIVLEWSFKQAHLVAEPSIEALLPEAKSTLATY 646 (654)
Q Consensus 573 i~~Lv~LL~~~~~~~q~~Al~~L~~ia~~~~~~--~~l~~~~~l~~l~~~~~~~~~~q~~~~~~l~~~a~~~l~~y 646 (654)
++.|..=|.++++.++..||.+|-++..|.+.. .++.....+.-+.. ..............+-.+++..++..
T Consensus 39 ~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~-~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 39 VDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLK-FDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHH-hhccccccCCCChHHHHHHHHHHHHH
Confidence 455555566777778889999999999888873 45655554444421 10011111222345666666665543
No 250
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=22.71 E-value=1.5e+03 Score=27.80 Aligned_cols=57 Identities=12% Similarity=0.070 Sum_probs=43.7
Q ss_pred HHHhcCCHHHHHHhhccCC-----HHHHHHHHHHHHHhcCCcchHHHHHHcCchHHHHHhhc
Q 006250 186 LIIEEGGVPPLLKLAYEGE-----LEGQENAARAIGLLGRDAESVEQIVNAGVCSTFAKNLK 242 (654)
Q Consensus 186 ~I~e~G~Ip~LV~LL~s~~-----~~~q~~Aa~AL~nLa~~~e~~~~iv~~GaIp~Lv~LL~ 242 (654)
.+.+.||+..|+.+|.+-. ...-.....-|..++.-+.||+.+++.|+++.|++.|.
T Consensus 112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~ 173 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLN 173 (802)
T ss_pred HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHH
Confidence 3456899999999997532 33444456666667777899999999999999999884
No 251
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=22.67 E-value=3.9e+02 Score=32.58 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=23.9
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhc
Q 006250 527 IGPLVNLLDEREPEVIMEATVALNKF 552 (654)
Q Consensus 527 I~pLV~lL~~~~~~v~~eAa~AL~~~ 552 (654)
|.|||++|++.+.++..+|+.+|.+-
T Consensus 99 ~~~l~~~~~~~~~~~a~~a~~~l~~~ 124 (844)
T TIGR00117 99 VHPLIDALDSQDANIAPIAAKALSHT 124 (844)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhce
Confidence 88999999999999999999999774
No 252
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.13 E-value=3e+02 Score=34.55 Aligned_cols=129 Identities=16% Similarity=0.108 Sum_probs=76.9
Q ss_pred hHHHHcccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcC------CHHHHHHhhccC--CHHHHHHH--HHHHHHhc
Q 006250 150 LIWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEG------GVPPLLKLAYEG--ELEGQENA--ARAIGLLG 219 (654)
Q Consensus 150 ~v~~lV~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G------~Ip~LV~LL~s~--~~~~q~~A--a~AL~nLa 219 (654)
.|.+.|=.++.-+...|..|-.+|..+.. .+...+.| .|..++..+..| .......| .-|++.+.
T Consensus 739 ~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~-----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il 813 (1176)
T KOG1248|consen 739 LIPEVILSLKEVNVKARRNAFALLVFIGA-----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHIL 813 (1176)
T ss_pred HHHHHHHhcccccHHHHhhHHHHHHHHHH-----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence 45555656677788899999999988873 22223333 677777777766 22222222 34444444
Q ss_pred CCcchHHHHHHc----CchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccC
Q 006250 220 RDAESVEQIVNA----GVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFE 286 (654)
Q Consensus 220 ~~~e~~~~iv~~----GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~ 286 (654)
.. -..+.+. +.+..+.-.|.+.+.++...|...+.-+....|+..-.--.+-.+|.+..++...
T Consensus 814 ~e---~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~ 881 (1176)
T KOG1248|consen 814 QE---FKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH 881 (1176)
T ss_pred HH---HhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh
Confidence 32 1112222 3344445566788899999999999988876665322222233677777776654
No 253
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=21.77 E-value=8.7e+02 Score=28.92 Aligned_cols=102 Identities=17% Similarity=0.211 Sum_probs=56.7
Q ss_pred cHHHHHHhhccCChhHHHHHHHHHHHHHhhccc-ChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhh
Q 006250 438 ALLCFAVLLEKGPEDVKHFSAMALMEITAVAEK-NSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLA 516 (654)
Q Consensus 438 aL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~-~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la 516 (654)
.+.+|.++--+.++.++.|..-.|..|+ .+ .+..|+.. .+..+.+-++++-.--+..+..++....
T Consensus 409 llr~~ar~q~d~~~~irtntticlgki~---~~l~~~~R~~v----------L~~aftralkdpf~paR~a~v~~l~at~ 475 (690)
T KOG1243|consen 409 LLRYLARLQPDEHGGIRTNTTICLGKIA---PHLAASVRKRV----------LASAFTRALKDPFVPARKAGVLALAATQ 475 (690)
T ss_pred HHHHHHhhCccccCcccccceeeecccc---cccchhhhccc----------cchhhhhhhcCCCCCchhhhhHHHhhcc
Confidence 5566777666777888888888888775 22 22223210 1111222122222223444455555555
Q ss_pred hcchhh--hhccHHHHHHHhccCCHHHHHHHHHHHHhc
Q 006250 517 RTFRAT--ETRIIGPLVNLLDEREPEVIMEATVALNKF 552 (654)
Q Consensus 517 ~~~~~~--e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~ 552 (654)
..|... .+++.|.++-++-+.+..|+..|-.++..|
T Consensus 476 ~~~~~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~f 513 (690)
T KOG1243|consen 476 EYFDQSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQF 513 (690)
T ss_pred cccchhhhhhhccccccccccCcccchhhHHHHHHHHH
Confidence 455443 245677777777777777777777777555
No 254
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.78 E-value=1.6e+03 Score=27.59 Aligned_cols=167 Identities=14% Similarity=0.169 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHH
Q 006250 410 QMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAV 489 (654)
Q Consensus 410 ~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~v 489 (654)
.+|..|...|..+...- +.+..+...+.+..+...|++.+.-|--+|...+.-++..-.+ .+
T Consensus 742 pik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e-----------------~i 803 (982)
T KOG4653|consen 742 PIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE-----------------DI 803 (982)
T ss_pred cchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch-----------------hh
Confidence 47888999999988744 6778888899999999999999999999999866655544221 12
Q ss_pred HHHHHHHhhhcC----cchh-------hHHHHHHHHhhhcchhhhhccHHHHHHHhccCCHHHHHHHHHHHHhccccCCC
Q 006250 490 LEQLLHIVEKAD----SDLL-------IPSIRAIGNLARTFRATETRIIGPLVNLLDEREPEVIMEATVALNKFATTENY 558 (654)
Q Consensus 490 v~~L~~ll~~~~----~~l~-------~~~~~alg~la~~~~~~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a~~~n~ 558 (654)
.+.|..--.+.. .+.. ...++++|.+...+.+ .+|....+-.++.+..-+..+...+++++--..+
T Consensus 804 l~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~---~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~ 880 (982)
T KOG4653|consen 804 LPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA---VLINTFLSGVREPDHEFRASSLANLGQLCQLLAF 880 (982)
T ss_pred HHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH---HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhh
Confidence 233222111111 1222 2333344444433332 3555556666777777788888888888521111
Q ss_pred CCHHHHHHHHHCCCHHHHHHhhccCCcc-hHHHHHHHHHHHHhCCC
Q 006250 559 LSETHSKAIINAGGVKHLIQLVYFGEQM-IQIPALTLLCYIAIKQP 603 (654)
Q Consensus 559 ~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~-~q~~Al~~L~~ia~~~~ 603 (654)
.-+..+.| ....++++.+.++.. +...|+..+..+ ++..
T Consensus 881 ---~vsd~~~e--v~~~Il~l~~~d~s~~vRRaAv~li~~l-L~~t 920 (982)
T KOG4653|consen 881 ---QVSDFFHE--VLQLILSLETTDGSVLVRRAAVHLLAEL-LNGT 920 (982)
T ss_pred ---hhhHHHHH--HHHHHHHHHccCCchhhHHHHHHHHHHH-Hhcc
Confidence 11223433 466777777766553 233355555444 5543
No 255
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=20.43 E-value=2.3e+02 Score=27.68 Aligned_cols=77 Identities=22% Similarity=0.226 Sum_probs=49.9
Q ss_pred CCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcchHHHHHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHH
Q 006250 191 GGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHF 270 (654)
Q Consensus 191 G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~~iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i 270 (654)
...+.+...++++++-.+..+..++...... +.... .+..+..++.+++.-+|....|+|..++..+++....+
T Consensus 120 ~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~-~~~~~-----~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~~ 193 (213)
T PF08713_consen 120 EALELLEKWAKSDNEWVRRAAIVMLLRYIRK-EDFDE-----LLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLEF 193 (213)
T ss_dssp GHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG-CHHHH-----HHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh-cCHHH-----HHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 3566667788888888888776666554443 11111 12233344567778899999999999999888776666
Q ss_pred HhC
Q 006250 271 AQN 273 (654)
Q Consensus 271 ~~~ 273 (654)
++.
T Consensus 194 l~~ 196 (213)
T PF08713_consen 194 LQK 196 (213)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 256
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=20.36 E-value=3e+02 Score=26.94 Aligned_cols=67 Identities=13% Similarity=0.244 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhhhhccHHHHHHHhccCCHHHHHHHHHHHHhcc
Q 006250 487 KAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRATETRIIGPLVNLLDEREPEVIMEATVALNKFA 553 (654)
Q Consensus 487 ~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a 553 (654)
+.-.+.++++..+.++.++..++.-|+-+-+-.-..-...||.|+.|..+.++.++..|-..+..+.
T Consensus 7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~ 73 (187)
T PF12830_consen 7 QRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELH 73 (187)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHH
Confidence 3445677777777788888888888887775322222247999999999999999999988887763
Done!