Query 006250
Match_columns 654
No_of_seqs 417 out of 1636
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 19:59:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006250.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006250hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ul1_B Importin subunit alpha- 100.0 3.8E-43 1.3E-47 394.7 31.6 409 151-650 59-480 (510)
2 3tpo_A Importin subunit alpha- 100.0 7.8E-42 2.7E-46 385.4 33.0 407 152-649 79-498 (529)
3 1xm9_A Plakophilin 1; armadill 100.0 4.8E-38 1.6E-42 348.7 33.7 381 153-653 6-456 (457)
4 3now_A UNC-45 protein, SD10334 100.0 3.9E-36 1.3E-40 350.3 34.9 398 100-645 329-779 (810)
5 4b8j_A Importin subunit alpha- 100.0 5.4E-35 1.9E-39 327.9 40.1 397 153-650 78-498 (528)
6 3l6x_A Catenin delta-1; cateni 100.0 2.3E-36 7.9E-41 341.8 27.9 372 101-611 47-487 (584)
7 1xm9_A Plakophilin 1; armadill 100.0 6E-36 2.1E-40 331.8 21.7 392 103-603 3-452 (457)
8 3nmz_A APC variant protein; pr 100.0 3.6E-35 1.2E-39 324.7 24.3 317 155-604 76-454 (458)
9 3l6x_A Catenin delta-1; cateni 100.0 5.7E-34 2E-38 322.2 33.1 353 155-618 54-451 (584)
10 1wa5_B Importin alpha subunit; 100.0 1.6E-33 5.5E-38 316.6 36.3 402 151-650 89-512 (530)
11 3now_A UNC-45 protein, SD10334 100.0 1.1E-34 3.8E-39 338.2 27.1 347 104-598 379-780 (810)
12 3tpo_A Importin subunit alpha- 100.0 9.7E-34 3.3E-38 319.3 32.1 378 78-598 95-495 (529)
13 3ul1_B Importin subunit alpha- 100.0 8.8E-34 3E-38 318.5 30.1 380 76-598 74-476 (510)
14 3nmw_A APC variant protein; AR 100.0 8E-34 2.7E-38 304.7 26.9 274 163-604 46-338 (354)
15 2jdq_A Importin alpha-1 subuni 100.0 3.8E-32 1.3E-36 296.3 37.0 397 154-650 25-445 (450)
16 1jdh_A Beta-catenin; beta-cate 100.0 2E-33 6.9E-38 313.2 26.6 478 100-645 15-527 (529)
17 3nmz_A APC variant protein; pr 100.0 6.5E-33 2.2E-37 306.6 28.3 358 155-644 38-449 (458)
18 2z6h_A Catenin beta-1, beta-ca 100.0 1.8E-31 6.1E-36 307.6 31.7 415 101-619 55-505 (644)
19 2z6g_A B-catenin; FULL-length, 100.0 2.7E-31 9.1E-36 312.9 27.6 460 100-619 148-641 (780)
20 4b8j_A Importin subunit alpha- 100.0 1.9E-30 6.4E-35 291.1 32.1 359 97-598 112-494 (528)
21 1jdh_A Beta-catenin; beta-cate 100.0 1.4E-30 4.8E-35 290.2 29.6 328 155-618 23-361 (529)
22 1wa5_B Importin alpha subunit; 100.0 7.7E-30 2.6E-34 286.6 33.3 359 98-599 126-509 (530)
23 2jdq_A Importin alpha-1 subuni 100.0 1.8E-29 6.2E-34 275.2 30.3 358 98-599 59-442 (450)
24 2z6h_A Catenin beta-1, beta-ca 100.0 2.5E-29 8.6E-34 289.6 30.8 328 155-618 20-358 (644)
25 3nmw_A APC variant protein; AR 100.0 5.1E-30 1.8E-34 275.1 20.0 261 119-555 53-335 (354)
26 2z6g_A B-catenin; FULL-length, 100.0 1.1E-27 3.8E-32 282.1 31.8 330 154-619 155-495 (780)
27 4hxt_A De novo protein OR329; 99.9 6.1E-26 2.1E-30 227.5 27.8 237 153-556 6-243 (252)
28 4hxt_A De novo protein OR329; 99.9 1.2E-25 4.2E-30 225.3 29.2 243 191-604 2-245 (252)
29 4db8_A Armadillo-repeat protei 99.9 3.9E-26 1.3E-30 230.4 23.9 233 154-553 17-250 (252)
30 4db8_A Armadillo-repeat protei 99.9 7.5E-25 2.6E-29 221.0 25.0 240 190-600 11-251 (252)
31 4db6_A Armadillo repeat protei 99.9 1.1E-23 3.7E-28 206.8 21.6 191 154-465 17-208 (210)
32 3opb_A SWI5-dependent HO expre 99.9 4E-23 1.4E-27 237.3 27.6 324 146-600 331-728 (778)
33 3tt9_A Plakophilin-2; cell adh 99.9 7.2E-24 2.5E-28 213.9 18.1 208 151-465 10-228 (233)
34 1xqr_A HSPBP1 protein; armadil 99.9 7.9E-23 2.7E-27 214.0 26.3 187 411-650 98-289 (296)
35 4db6_A Armadillo repeat protei 99.9 3.4E-22 1.2E-26 196.0 24.6 198 189-553 10-208 (210)
36 3tt9_A Plakophilin-2; cell adh 99.9 3.7E-22 1.3E-26 201.5 16.7 196 192-517 9-229 (233)
37 1xqr_A HSPBP1 protein; armadil 99.9 6.9E-22 2.4E-26 206.8 19.0 185 161-467 52-239 (296)
38 3opb_A SWI5-dependent HO expre 99.9 5.4E-21 1.9E-25 219.7 25.6 291 151-554 378-728 (778)
39 1oyz_A Hypothetical protein YI 99.6 2.2E-13 7.5E-18 139.6 24.7 248 154-595 28-277 (280)
40 1oyz_A Hypothetical protein YI 99.6 2.1E-13 7.1E-18 139.8 24.1 260 187-644 19-278 (280)
41 3grl_A General vesicular trans 99.5 4.2E-12 1.5E-16 142.9 25.7 328 150-650 22-396 (651)
42 3grl_A General vesicular trans 99.5 8.7E-12 3E-16 140.4 28.1 326 155-607 66-456 (651)
43 2vgl_B AP-2 complex subunit be 99.4 4.6E-11 1.6E-15 136.1 25.7 308 150-553 87-418 (591)
44 4fdd_A Transportin-1; heat rep 99.4 1.1E-11 3.8E-16 146.7 21.1 312 151-604 130-475 (852)
45 3ltm_A Alpha-REP4; protein eng 99.4 3.3E-11 1.1E-15 118.0 20.3 185 190-553 18-202 (211)
46 1b3u_A Protein (protein phosph 99.4 8.3E-11 2.8E-15 131.7 25.6 334 155-643 248-585 (588)
47 3ltj_A Alpharep-4; protein eng 99.3 4.5E-11 1.5E-15 116.1 19.7 186 189-553 12-197 (201)
48 2vgl_B AP-2 complex subunit be 99.3 7.4E-10 2.5E-14 126.1 32.8 334 150-604 122-497 (591)
49 1b3u_A Protein (protein phosph 99.3 1.6E-10 5.6E-15 129.3 26.1 364 155-618 132-525 (588)
50 4fdd_A Transportin-1; heat rep 99.3 1.5E-10 5.2E-15 136.9 21.9 332 147-599 172-511 (852)
51 3ltm_A Alpha-REP4; protein eng 99.3 4.1E-10 1.4E-14 110.2 20.7 182 154-519 24-205 (211)
52 3ltj_A Alpharep-4; protein eng 99.2 5.4E-10 1.9E-14 108.4 20.3 179 154-516 19-197 (201)
53 1w63_A Adapter-related protein 99.2 6.4E-09 2.2E-13 119.1 29.2 304 148-602 106-416 (618)
54 4gmo_A Putative uncharacterize 99.1 2.5E-10 8.6E-15 132.4 13.2 192 155-465 40-257 (684)
55 4gmo_A Putative uncharacterize 99.1 1.6E-09 5.5E-14 125.6 16.6 221 189-516 32-257 (684)
56 1ibr_B P95, importin beta-1 su 99.0 1.3E-08 4.4E-13 110.2 18.6 289 150-553 129-436 (462)
57 2bpt_A Importin beta-1 subunit 99.0 1.9E-07 6.6E-12 109.4 29.5 313 153-604 373-715 (861)
58 1ibr_B P95, importin beta-1 su 98.9 1.3E-08 4.6E-13 110.1 16.0 317 154-603 95-440 (462)
59 1w63_A Adapter-related protein 98.9 2E-07 6.7E-12 106.8 24.1 292 150-553 143-450 (618)
60 1qgr_A Protein (importin beta 98.8 4.4E-07 1.5E-11 106.6 25.9 329 151-601 130-480 (876)
61 1qgr_A Protein (importin beta 98.8 5.9E-07 2E-11 105.4 25.7 315 153-604 370-726 (876)
62 2bpt_A Importin beta-1 subunit 98.8 3.6E-06 1.2E-10 98.6 31.0 324 150-603 412-766 (861)
63 2vgl_A Adaptor protein complex 98.5 3E-05 1E-09 88.7 26.3 301 147-600 109-433 (621)
64 1te4_A Conserved protein MTH18 98.4 2.4E-08 8.2E-13 90.7 -1.2 118 437-596 12-129 (131)
65 4ady_A RPN2, 26S proteasome re 98.4 5.3E-05 1.8E-09 89.3 25.4 267 155-604 398-680 (963)
66 1u6g_C TIP120 protein, CAND1; 98.3 6.2E-05 2.1E-09 92.4 24.7 346 151-599 8-402 (1230)
67 4ady_A RPN2, 26S proteasome re 98.2 6.5E-05 2.2E-09 88.6 21.7 260 163-553 451-718 (963)
68 2vgl_A Adaptor protein complex 98.1 6.9E-05 2.4E-09 85.7 19.6 260 154-520 151-436 (621)
69 1te4_A Conserved protein MTH18 98.1 6.9E-06 2.4E-10 74.2 8.6 89 438-552 43-131 (131)
70 1u6g_C TIP120 protein, CAND1; 98.0 0.00082 2.8E-08 82.4 27.3 309 164-603 348-682 (1230)
71 3b2a_A TON_1937, putative unch 97.9 0.0002 7E-09 70.9 14.5 150 437-606 33-185 (265)
72 2qk2_A LP04448P; mini spindles 97.9 0.00013 4.4E-09 72.7 13.4 177 410-604 30-209 (242)
73 2db0_A 253AA long hypothetical 97.9 0.0034 1.2E-07 59.9 21.9 158 414-600 89-246 (253)
74 3tjz_B Coatomer subunit gamma; 97.8 0.00016 5.5E-09 76.8 12.9 248 147-551 102-350 (355)
75 1ho8_A Vacuolar ATP synthase s 97.6 0.0027 9.1E-08 69.4 19.4 131 154-286 172-330 (480)
76 2db0_A 253AA long hypothetical 97.5 0.01 3.4E-07 56.8 19.5 214 189-553 30-245 (253)
77 2qk2_A LP04448P; mini spindles 97.4 0.0015 5.3E-08 64.8 12.8 127 410-553 72-204 (242)
78 3b2a_A TON_1937, putative unch 97.3 0.0076 2.6E-07 59.8 16.2 176 410-606 48-223 (265)
79 3tjz_B Coatomer subunit gamma; 97.3 0.014 4.9E-07 61.8 19.6 247 192-603 69-319 (355)
80 2qk1_A Protein STU2; STU2P, XM 97.1 0.0049 1.7E-07 62.0 13.6 184 411-604 32-224 (249)
81 2iw3_A Elongation factor 3A; a 96.9 0.06 2.1E-06 64.2 22.2 121 154-285 19-144 (986)
82 1ho8_A Vacuolar ATP synthase s 96.8 0.15 5.2E-06 55.7 22.7 71 525-599 395-475 (480)
83 2qk1_A Protein STU2; STU2P, XM 96.7 0.0093 3.2E-07 60.0 11.5 134 410-553 76-219 (249)
84 3dad_A FH1/FH2 domain-containi 96.7 0.011 3.6E-07 61.9 12.0 133 151-284 120-264 (339)
85 3dad_A FH1/FH2 domain-containi 95.0 0.23 7.9E-06 51.8 13.1 147 413-606 136-292 (339)
86 1lrv_A LRV, leucine-rich repea 94.4 0.022 7.7E-07 57.2 3.7 66 155-255 56-121 (244)
87 1wa5_C Importin alpha RE-expor 93.3 2 7E-05 51.0 18.5 95 164-262 376-488 (960)
88 2x1g_F Cadmus; transport prote 92.5 8.8 0.0003 45.3 22.6 92 161-262 476-573 (971)
89 2x19_B Importin-13; nuclear tr 92.3 13 0.00045 43.6 23.6 94 159-261 459-556 (963)
90 2x1g_F Cadmus; transport prote 91.7 7.1 0.00024 46.1 20.3 55 203-261 476-535 (971)
91 2iw3_A Elongation factor 3A; a 91.1 2.3 8E-05 50.6 15.0 126 154-287 100-226 (986)
92 4ffb_C Protein STU2; tubulin f 90.9 1.6 5.4E-05 43.8 11.7 128 410-552 70-210 (278)
93 1wa5_C Importin alpha RE-expor 88.9 6.9 0.00024 46.4 17.0 179 410-599 473-669 (960)
94 3l9t_A Putative uncharacterize 88.1 3.4 0.00012 40.9 11.2 130 410-569 86-218 (240)
95 4hat_C Exportin-1; heat repeat 85.8 1.5 5.3E-05 52.7 8.8 120 161-284 465-595 (1023)
96 2of3_A ZYG-9; multifunctional 84.4 4.4 0.00015 40.9 10.1 99 438-552 133-234 (266)
97 4hat_C Exportin-1; heat repeat 83.9 3.1 0.00011 50.1 10.1 133 411-554 469-618 (1023)
98 3u0r_A Apoptosis inhibitor 5; 81.6 7.4 0.00025 42.4 10.9 95 160-265 39-133 (507)
99 2x19_B Importin-13; nuclear tr 81.0 17 0.00059 42.6 15.1 136 447-603 459-602 (963)
100 4ffb_C Protein STU2; tubulin f 76.2 16 0.00056 36.2 11.2 158 438-604 56-216 (278)
101 1lsh_A Lipovitellin (LV-1N, LV 74.7 65 0.0022 38.7 17.7 122 450-595 408-538 (1056)
102 3l9t_A Putative uncharacterize 72.9 18 0.00061 35.8 10.0 100 160-272 115-218 (240)
103 2fv2_A RCD1 required for cell 72.3 16 0.00054 36.6 9.5 126 162-287 14-158 (268)
104 3u0r_A Apoptosis inhibitor 5; 72.2 12 0.0004 40.9 9.2 89 447-551 38-126 (507)
105 3m1i_C Exportin-1; heat repeat 72.0 37 0.0013 40.5 14.7 96 450-554 466-569 (1049)
106 2f31_A Diaphanous protein homo 70.4 11 0.00036 37.0 7.9 80 182-262 35-126 (233)
107 3ebb_A Phospholipase A2-activa 67.4 46 0.0016 34.0 12.2 106 161-269 160-271 (304)
108 3eg5_B Protein diaphanous homo 64.2 29 0.00099 36.7 10.3 108 155-263 72-193 (383)
109 2fv2_A RCD1 required for cell 63.2 28 0.00095 34.8 9.1 95 167-262 74-175 (268)
110 1lrv_A LRV, leucine-rich repea 61.8 7.4 0.00025 38.6 4.8 62 195-256 150-218 (244)
111 2of3_A ZYG-9; multifunctional 60.8 1.4E+02 0.0047 29.8 15.7 141 448-605 98-241 (266)
112 3m1i_C Exportin-1; heat repeat 60.6 32 0.0011 41.1 11.0 99 411-520 469-572 (1049)
113 1lsh_A Lipovitellin (LV-1N, LV 58.7 49 0.0017 39.7 12.1 133 438-601 357-508 (1056)
114 3oc3_A Helicase MOT1, MOT1; re 54.3 14 0.00048 41.2 5.6 86 163-260 242-327 (800)
115 3ebb_A Phospholipase A2-activa 54.3 1.6E+02 0.0053 30.0 13.4 96 165-261 118-220 (304)
116 3ut4_A CTHE_2751, putative unc 53.5 1E+02 0.0035 27.6 10.2 102 525-650 31-132 (134)
117 2bnx_A Diaphanous protein homo 49.8 47 0.0016 35.0 8.9 80 183-263 40-131 (386)
118 3c2g_A SYS-1 protein; beta-cat 43.8 1.2E+02 0.004 31.9 10.2 114 172-286 265-379 (619)
119 3gs3_A Symplekin, LD45768P; he 42.3 2.5E+02 0.0086 27.7 12.4 112 487-600 52-173 (257)
120 3qml_C Protein SLS1, nucleotid 37.7 1.4E+02 0.0049 30.5 9.7 100 157-260 78-188 (315)
121 2f31_A Diaphanous protein homo 35.7 3E+02 0.01 26.3 11.8 119 163-284 68-208 (233)
122 3ibv_A Exportin-T; karyopherin 35.6 50 0.0017 39.4 7.0 114 410-534 458-583 (980)
123 3o2t_A Symplekin; heat repeat, 34.4 1.9E+02 0.0066 30.4 10.5 105 489-600 64-183 (386)
124 3gjx_A Exportin-1; transport, 34.1 47 0.0016 40.0 6.4 105 162-272 492-603 (1073)
125 3eg5_B Protein diaphanous homo 34.1 3.9E+02 0.013 27.8 13.0 122 162-286 133-276 (383)
126 1upk_A MO25 protein; transfera 30.4 1.7E+02 0.0059 30.3 9.0 112 150-261 165-283 (341)
127 3oc3_A Helicase MOT1, MOT1; re 30.3 43 0.0015 37.5 4.7 100 437-553 299-403 (800)
128 1x5b_A Signal transducing adap 27.7 87 0.003 28.8 5.8 70 150-219 53-124 (163)
129 3gjx_A Exportin-1; transport, 26.8 1.3E+02 0.0046 36.1 8.6 96 411-517 495-595 (1073)
130 1x5b_A Signal transducing adap 26.4 97 0.0033 28.4 5.8 29 576-604 57-85 (163)
131 1mhq_A ADP-ribosylation factor 24.9 1E+02 0.0035 27.9 5.6 69 151-219 40-115 (148)
132 3ibv_A Exportin-T; karyopherin 24.2 9.2E+02 0.031 28.3 27.1 125 159-287 203-345 (980)
133 3ldz_A STAM-1, signal transduc 23.3 1.1E+02 0.0037 27.3 5.4 69 151-219 44-113 (140)
134 1juq_A ADP-ribosylation factor 22.3 1E+02 0.0035 28.6 5.2 69 151-219 52-127 (171)
135 3ldz_A STAM-1, signal transduc 21.9 1.2E+02 0.0041 27.0 5.4 69 193-261 44-114 (140)
136 2bnx_A Diaphanous protein homo 21.1 7E+02 0.024 25.8 12.8 120 163-285 72-213 (386)
137 3gae_A Protein DOA1; UFD3, CDC 21.1 37 0.0013 33.6 2.0 101 160-264 101-220 (253)
No 1
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=3.8e-43 Score=394.68 Aligned_cols=409 Identities=14% Similarity=0.182 Sum_probs=316.6
Q ss_pred HHHHcccccCCCHHHHHHHHHHHHHh-ccCCchhHHHHHhcCCHHHHHHhhccC-CHHHHHHHHHHHHHhcCC-cchHHH
Q 006250 151 IWEQIAILHTGSMEEKCDAAASLVSL-ARDNDRYGKLIIEEGGVPPLLKLAYEG-ELEGQENAARAIGLLGRD-AESVEQ 227 (654)
Q Consensus 151 v~~lV~lL~s~~~~~k~~Aa~aL~~L-a~~~~~~~~~I~e~G~Ip~LV~LL~s~-~~~~q~~Aa~AL~nLa~~-~e~~~~ 227 (654)
|-++|+.|++++++.+..|+..++.+ +.+.....+.|+++|+||+||++|++. ++.+|++|+|||+||+.+ +++++.
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~ 138 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 138 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 56669999999999999999999986 444445689999999999999999855 589999999999999875 689999
Q ss_pred HHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhH
Q 006250 228 IVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHS 307 (654)
Q Consensus 228 iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~ 307 (654)
|++.|+||.|+++|+++++++++.|+|+|+||+.+++++|+.+.+.|++++|+.+|.+..........+.+. .+.+..
T Consensus 139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a--~~~L~n 216 (510)
T 3ul1_B 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL--TWTLSN 216 (510)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHH--HHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHH--HHHHHH
Confidence 999999999999999999999999999999999988999999999999999999998764322211101000 012222
Q ss_pred HHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCccc
Q 006250 308 ALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQ 387 (654)
Q Consensus 308 l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (654)
++....+ ...+..+ .+.+|.+.
T Consensus 217 l~~~~~~------------------------------~~~~~~~----------------------------~~~lp~L~ 238 (510)
T 3ul1_B 217 LCRNKNP------------------------------APPLDAV----------------------------EQILPTLV 238 (510)
T ss_dssp HHCCCSS------------------------------CCCHHHH----------------------------HHHHHHHH
T ss_pred Hhhcccc------------------------------hhHHHHH----------------------------HhHHHHHH
Confidence 2211000 0000000 01112232
Q ss_pred hhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhh
Q 006250 388 DQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAV 467 (654)
Q Consensus 388 ~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ 467 (654)
.++. .+++ +++..|++||++|+.++.+..+.+.+.|+++.|+.+|++++..++..++++|++|+.+
T Consensus 239 ~LL~----------~~~~----~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~ 304 (510)
T 3ul1_B 239 RLLH----------HNDP----EVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 304 (510)
T ss_dssp HHTT----------CSCH----HHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHh----------cCCH----HHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcC
Confidence 2221 2444 4678999999999999999999999999999999999999999999999999999754
Q ss_pred cccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchh-----hhhccHHHHHHHhccCCHHHH
Q 006250 468 AEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRA-----TETRIIGPLVNLLDEREPEVI 542 (654)
Q Consensus 468 ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~-----~e~~~I~pLV~lL~~~~~~v~ 542 (654)
.+ ..++... ..++++.|+.++.+.+++++..++++|+||+..... .+.++||+|+++|++++++++
T Consensus 305 ~~---~~~~~i~------~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~ 375 (510)
T 3ul1_B 305 TD---EQTQKVI------DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQ 375 (510)
T ss_dssp CH---HHHHHHH------HTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHH
T ss_pred CH---HHHHHHh------hccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHH
Confidence 33 3332211 123567788999999999999999999999975443 245789999999999999999
Q ss_pred HHHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhccCCcchHHHHHHHHHHHHh---CCCchHHHHhhhhhHHHHh
Q 006250 543 MEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIAI---KQPESKTLAQEEVLIVLEW 619 (654)
Q Consensus 543 ~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~ia~---~~~~~~~l~~~~~l~~l~~ 619 (654)
++|+|||+|+++++ ..++..++++.|++++|++||++.|+.++..++.+|.+|.. +.+..+.+. ..+++
T Consensus 376 ~~Aa~aL~Nl~~~~---~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~-----~~iee 447 (510)
T 3ul1_B 376 KEAAWAITNYTSGG---TVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLS-----IMIEE 447 (510)
T ss_dssp HHHHHHHHHHHHHC---CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHH-----HHHHH
T ss_pred HHHHHHHHHHHccC---CHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHH-----HHHHH
Confidence 99999999998766 37889999999999999999999999888889999888832 333333221 11222
Q ss_pred --hhhhhhhhcCccHHhHHHHHHHHHHhhhcCC
Q 006250 620 --SFKQAHLVAEPSIEALLPEAKSTLATYQSRD 650 (654)
Q Consensus 620 --~~~~~~~~q~~~~~~l~~~a~~~l~~y~~~~ 650 (654)
|.+.++.+|+|+++++|.+|..++|.||+..
T Consensus 448 ~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~ 480 (510)
T 3ul1_B 448 CGGLDKIEALQRHENESVYKASLNLIEKYFSVE 480 (510)
T ss_dssp TTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC--
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence 5566677899999999999999999999743
No 2
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=7.8e-42 Score=385.40 Aligned_cols=407 Identities=14% Similarity=0.172 Sum_probs=315.4
Q ss_pred HHHcccccCCCHHHHHHHHHHHHHh-ccCCchhHHHHHhcCCHHHHHHhhccC-CHHHHHHHHHHHHHhcCC-cchHHHH
Q 006250 152 WEQIAILHTGSMEEKCDAAASLVSL-ARDNDRYGKLIIEEGGVPPLLKLAYEG-ELEGQENAARAIGLLGRD-AESVEQI 228 (654)
Q Consensus 152 ~~lV~lL~s~~~~~k~~Aa~aL~~L-a~~~~~~~~~I~e~G~Ip~LV~LL~s~-~~~~q~~Aa~AL~nLa~~-~e~~~~i 228 (654)
-++|+.|++++++.+..|+..++.+ +.+.....+.|++.|+||+||++|+.+ ++.+|.+|+|+|+||+.+ ++++..+
T Consensus 79 ~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~v 158 (529)
T 3tpo_A 79 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAV 158 (529)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3448999999999999999999986 444455689999999999999999755 489999999999999986 5788999
Q ss_pred HHcCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHH
Q 006250 229 VNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSA 308 (654)
Q Consensus 229 v~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l 308 (654)
++.|+||+|+++|.++++++++.|+|+|+||+.+++++|+.+.+.|++++|+.+|............+.+. .+.+..+
T Consensus 159 v~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a--~~~L~nl 236 (529)
T 3tpo_A 159 VDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL--TWTLSNL 236 (529)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHH--HHHHHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHH--HHHHHHH
Confidence 99999999999999999999999999999999989999999999999999999998764322211101000 0122222
Q ss_pred HHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCccch
Q 006250 309 LVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQD 388 (654)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (654)
+....+ ...+..+ .+++|.+..
T Consensus 237 ~~~~~~------------------------------~~~~~~~----------------------------~~~lp~L~~ 258 (529)
T 3tpo_A 237 CRNKNP------------------------------APPLDAV----------------------------EQILPTLVR 258 (529)
T ss_dssp HCCCTT------------------------------CCCHHHH----------------------------HHHHHHHHH
T ss_pred Hhcccc------------------------------hhhHHHH----------------------------hhHHHHHHH
Confidence 211000 0000000 011222332
Q ss_pred hhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhhc
Q 006250 389 QQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVA 468 (654)
Q Consensus 389 ~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~a 468 (654)
++. .+|+ .++..|++||.+++.++.+..+.+.+.|+++.|+.+|.+++..++..++++|++|+.+.
T Consensus 259 LL~----------~~~~----~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~ 324 (529)
T 3tpo_A 259 LLH----------HNDP----EVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 324 (529)
T ss_dssp HTT----------SSCH----HHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred Hhc----------CCcH----HHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccc
Confidence 221 2455 36788999999999999999999999999999999999999999999999999997543
Q ss_pred ccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchh-----hhhccHHHHHHHhccCCHHHHH
Q 006250 469 EKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRA-----TETRIIGPLVNLLDEREPEVIM 543 (654)
Q Consensus 469 e~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~-----~e~~~I~pLV~lL~~~~~~v~~ 543 (654)
+ +.+... ...++++.|+.++.+++++++..++++|+||+..... .+.++||+|+.+|.++++++++
T Consensus 325 ~---~~~~~i------~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~ 395 (529)
T 3tpo_A 325 D---EQTQKV------IDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQK 395 (529)
T ss_dssp H---HHHHHH------HHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHH
T ss_pred h---HHHHHH------hhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHH
Confidence 3 333321 1134567899999999999999999999999975433 2457899999999999999999
Q ss_pred HHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhccCCcchHHHHHHHHHHHHh---CCCchHHHHhhhhhHHHHh-
Q 006250 544 EATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIAI---KQPESKTLAQEEVLIVLEW- 619 (654)
Q Consensus 544 eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~ia~---~~~~~~~l~~~~~l~~l~~- 619 (654)
+|+|||+|+++++ ..++..++++.|+|++|++||.++|+.++..++.+|.+|.. +.++.+.+. ..+++
T Consensus 396 ~A~~aL~nl~~~~---~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~-----~~iee~ 467 (529)
T 3tpo_A 396 AAAWAITNYTSGG---TVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLS-----IMIEEC 467 (529)
T ss_dssp HHHHHHHHHHHHS---CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHH-----HHHHHT
T ss_pred HHHHHHHHHHcCC---CHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHH-----HHHHHC
Confidence 9999999998765 37899999999999999999999998887778999988832 333333221 11222
Q ss_pred -hhhhhhhhcCccHHhHHHHHHHHHHhhhcC
Q 006250 620 -SFKQAHLVAEPSIEALLPEAKSTLATYQSR 649 (654)
Q Consensus 620 -~~~~~~~~q~~~~~~l~~~a~~~l~~y~~~ 649 (654)
|.+.++.+|+|+++++|.+|..++|.||+.
T Consensus 468 ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~ 498 (529)
T 3tpo_A 468 GGLDKIEALQRHENESVYKASLNLIEKYFSV 498 (529)
T ss_dssp TCHHHHTGGGGCSSHHHHHHHHHHHHHHC--
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 556667789999999999999999999975
No 3
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=4.8e-38 Score=348.69 Aligned_cols=381 Identities=14% Similarity=0.129 Sum_probs=299.0
Q ss_pred HHcccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCC-cchHHHHHHc
Q 006250 153 EQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRD-AESVEQIVNA 231 (654)
Q Consensus 153 ~lV~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~-~e~~~~iv~~ 231 (654)
.+|.+|++++++.|..|+++|++++..++.++..|++.|+||+||++|+++++.+|+.|+|+|+||+.+ ++++..|+++
T Consensus 6 ~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~ 85 (457)
T 1xm9_A 6 KAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQ 85 (457)
T ss_dssp HHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHT
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHc
Confidence 348999999999999999999999988777888999999999999999999999999999999999987 8999999999
Q ss_pred CchHHHHHhhc-CCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHHHH
Q 006250 232 GVCSTFAKNLK-DGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALV 310 (654)
Q Consensus 232 GaIp~Lv~LL~-s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~~ 310 (654)
|+||+|+++|+ ++++++++.++|+|+||+.+ +++|..+++ |++|+|+.+|..+. +.+ ..
T Consensus 86 G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~----s~~---~~----------- 145 (457)
T 1xm9_A 86 NGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPF----SGW---CD----------- 145 (457)
T ss_dssp TCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHH----HTC---C------------
T ss_pred CCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccc----ccc---cc-----------
Confidence 99999999999 88999999999999999995 789999999 99999999995310 000 00
Q ss_pred hhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCccchhh
Q 006250 311 ASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQ 390 (654)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (654)
..
T Consensus 146 --~~---------------------------------------------------------------------------- 147 (457)
T 1xm9_A 146 --GN---------------------------------------------------------------------------- 147 (457)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --Cc----------------------------------------------------------------------------
Confidence 00
Q ss_pred hhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhh-CcHHHHHHhhcc------CChhHHHHHHHHHHH
Q 006250 391 VLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTES-RALLCFAVLLEK------GPEDVKHFSAMALME 463 (654)
Q Consensus 391 s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~-gaL~~L~~LL~~------~~~~v~~~aa~AL~~ 463 (654)
..+.++..++ .+...|++||+||+.+ +++.+.+.+. |+++.|+.+|++ .+..++.+++++|.+
T Consensus 148 -----~~~~~e~~~~----~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~n 217 (457)
T 1xm9_A 148 -----SNMSREVVDP----EVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHN 217 (457)
T ss_dssp -----------CCCH----HHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHH
T ss_pred -----cchhcccccH----HHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHh
Confidence 0000122233 4678999999999987 8899999998 999999999986 456789999999999
Q ss_pred HHhhccc---ChH--h----h--------hhccCC------------------------CchHHHHHHHHHHHHhhhcC-
Q 006250 464 ITAVAEK---NSD--L----R--------RSAFKP------------------------TSTAAKAVLEQLLHIVEKAD- 501 (654)
Q Consensus 464 Iaa~ae~---~~~--l----r--------r~a~~~------------------------~s~~~~~vv~~L~~ll~~~~- 501 (654)
++...+. ... + | ...|.. ..-....+++.|+.++.+.+
T Consensus 218 Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~ 297 (457)
T 1xm9_A 218 LSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKK 297 (457)
T ss_dssp HTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCC
T ss_pred cccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCC
Confidence 8621100 000 0 0 000100 00011346788999998765
Q ss_pred cchhhHHHHHHHHhhhcchh----------hhhccHHHHHHHhccCCHHHHHHHHHHHHhccccCCCCCHHHHHHHHHCC
Q 006250 502 SDLLIPSIRAIGNLARTFRA----------TETRIIGPLVNLLDEREPEVIMEATVALNKFATTENYLSETHSKAIINAG 571 (654)
Q Consensus 502 ~~l~~~~~~alg~la~~~~~----------~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~g 571 (654)
++++.+++++|+||++.... .+.++||+||++|.+++++++++|+|+|+|++.+. +.+.++..|
T Consensus 298 ~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~------~~~~~i~~~ 371 (457)
T 1xm9_A 298 DATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP------LLHRVMGNQ 371 (457)
T ss_dssp HHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG------GGHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH------HHHHHHHHh
Confidence 88999999999999863211 13578999999999999999999999999997532 345566779
Q ss_pred CHHHHHHhhccCCc------chHHHHHHHHHHHHhCCCc-hHHHHhhhhhHHHHhhhhhhhhhcCccHHhHHHHHHHHHH
Q 006250 572 GVKHLIQLVYFGEQ------MIQIPALTLLCYIAIKQPE-SKTLAQEEVLIVLEWSFKQAHLVAEPSIEALLPEAKSTLA 644 (654)
Q Consensus 572 gi~~Lv~LL~~~~~------~~q~~Al~~L~~ia~~~~~-~~~l~~~~~l~~l~~~~~~~~~~q~~~~~~l~~~a~~~l~ 644 (654)
++++||+||..+++ .++..++.+|.++..+.++ ...+.++|+++.|+ .++.++..+.+|.+|...|+
T Consensus 372 ~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~------~L~~~~~~~~i~~~A~~~L~ 445 (457)
T 1xm9_A 372 VFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNII------NLCRSSASPKAAEAARLLLS 445 (457)
T ss_dssp THHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHH------HHHHCTTCHHHHHHHHHHHH
T ss_pred hhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHH------HHHcCCCcHHHHHHHHHHHH
Confidence 99999999998754 3566799999999765554 45677899999998 44444447899999999999
Q ss_pred hhhcCC--CCC
Q 006250 645 TYQSRD--RPF 653 (654)
Q Consensus 645 ~y~~~~--~~~ 653 (654)
.||... |+|
T Consensus 446 ~~~~~~~l~~~ 456 (457)
T 1xm9_A 446 DMWSSKELQGV 456 (457)
T ss_dssp TTSSSTTCSSC
T ss_pred HHHcchhhhcc
Confidence 999876 654
No 4
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=3.9e-36 Score=350.33 Aligned_cols=398 Identities=15% Similarity=0.127 Sum_probs=308.9
Q ss_pred CcccHHHHHHhhhcChhhHH----H-HHHhcCCCCCccccccCCCCccccchhhhhHHHHcccccCC--CHHHHHHHHHH
Q 006250 100 PAAAFRKTLMQLENSLGDVS----W-LIRVSASSEENDDEYLGLPPIAANEPILCLIWEQIAILHTG--SMEEKCDAAAS 172 (654)
Q Consensus 100 ~~~~l~~l~~lL~~~~~dv~----~-lL~~s~~~~~~~~~~~~lp~la~~~~i~~~v~~lV~lL~s~--~~~~k~~Aa~a 172 (654)
..| +|.|..+|.+....++ | |.++....... ...++++ .+.+..++..++++|.++ +.+.+.+|+++
T Consensus 329 ~~g-v~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d----~~~~~~~-~g~i~~Lv~~l~~lL~~~~~d~~v~~~Avea 402 (810)
T 3now_A 329 EQG-VDILKRLYHSKNDGIRVRALVGLCKLGSYGGQD----AAIRPFG-DGAALKLAEACRRFLIKPGKDKDIRRWAADG 402 (810)
T ss_dssp HHH-HHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTT----TSCCSST-TTHHHHHHHHHHHHHHCSSCCSSHHHHHHHH
T ss_pred HcC-cHHHHHHHcCCCHHHHHHHHHHHHHhccccccC----ccccchh-hccHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 444 5999988876553332 2 33332221100 1234443 344556677789999988 89999999999
Q ss_pred HHHhccCCchhHHHHH-hcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcc----------------------------
Q 006250 173 LVSLARDNDRYGKLII-EEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAE---------------------------- 223 (654)
Q Consensus 173 L~~La~~~~~~~~~I~-e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e---------------------------- 223 (654)
|.+|+.+ +..+..++ +.|+||+||.+|+++++.++..|+|+|.||+.+.+
T Consensus 403 LayLS~~-~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~ 481 (810)
T 3now_A 403 LAYLTLD-AECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDV 481 (810)
T ss_dssp HHHHTTS-HHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHH
T ss_pred HHHHhCC-cHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccH
Confidence 9999976 66666666 57999999999999999999999999999998642
Q ss_pred --hH---HHHHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHh
Q 006250 224 --SV---EQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIAS 298 (654)
Q Consensus 224 --~~---~~iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~ 298 (654)
++ +.|+++|+||+|+.+|+++++.+|++|+|+|+|||. ++++|+.++++|++|+|+.+|++++.
T Consensus 482 ~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~---------- 550 (810)
T 3now_A 482 DFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTE---------- 550 (810)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCH----------
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCH----------
Confidence 22 789999999999999999999999999999999998 68899999999999999999976430
Q ss_pred hccchhhhHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCccccccc
Q 006250 299 KQNISSLHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAM 378 (654)
Q Consensus 299 ~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~ 378 (654)
T Consensus 551 -------------------------------------------------------------------------------- 550 (810)
T 3now_A 551 -------------------------------------------------------------------------------- 550 (810)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcC-ChHHHHH-HHhhCcHHHHHHhhccCCh-hHHH
Q 006250 379 QPNHHNQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKG-NLSICRN-LTESRALLCFAVLLEKGPE-DVKH 455 (654)
Q Consensus 379 ~~~~~~~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~g-n~~~~~~-i~e~gaL~~L~~LL~~~~~-~v~~ 455 (654)
..|..|++||.+|+.+ +++..-. ....+++|+|+.||.++.. ..++
T Consensus 551 -------------------------------~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~ 599 (810)
T 3now_A 551 -------------------------------KGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENF 599 (810)
T ss_dssp -------------------------------HHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHH
T ss_pred -------------------------------HHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHH
Confidence 1356799999999874 4433210 0123699999999997644 5568
Q ss_pred HHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhh----h-hccHHHH
Q 006250 456 FSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRAT----E-TRIIGPL 530 (654)
Q Consensus 456 ~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~----e-~~~I~pL 530 (654)
+|+|||.||+... .+.++... ..++++.|+.++.+.++.++.+++++|+||+...... + .+.+++|
T Consensus 600 eAl~AL~NLa~~~---d~~~~~Ii------~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~L 670 (810)
T 3now_A 600 ESLMALTNLASMN---ESVRQRII------KEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFL 670 (810)
T ss_dssp HHHHHHHHHTTSC---HHHHHHHH------HTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHH
T ss_pred HHHHHHHHHhcCC---HHHHHHHH------HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHH
Confidence 9999999998653 34444211 1246889999999999999999999999999743321 2 4689999
Q ss_pred HHHhccCCHHHHHHHHHHHHhccccCCCCCHHHHHHHHH-CCCHHHHHHhhccCCcchHHHHHHHHHHHHhCCCc-hHHH
Q 006250 531 VNLLDEREPEVIMEATVALNKFATTENYLSETHSKAIIN-AGGVKHLIQLVYFGEQMIQIPALTLLCYIAIKQPE-SKTL 608 (654)
Q Consensus 531 V~lL~~~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~-~ggi~~Lv~LL~~~~~~~q~~Al~~L~~ia~~~~~-~~~l 608 (654)
+.+|++.+..++++|+|||++++++ +.++++++++ .||+++|++||.+++..+|..|+++|+|++.+.++ .+.+
T Consensus 671 v~LL~s~d~~vq~~Aa~ALanLt~~----s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l 746 (810)
T 3now_A 671 ALLCEDEDEETATACAGALAIITSV----SVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKL 746 (810)
T ss_dssp HHGGGCSSHHHHHHHHHHHHHHHHH----CHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHhCC----CHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 9999999999999999999999864 2578999999 99999999999999999999999999999765443 4678
Q ss_pred HhhhhhHHHHhhhhhhhhhcCc--cHHhHHHHHHHHHHh
Q 006250 609 AQEEVLIVLEWSFKQAHLVAEP--SIEALLPEAKSTLAT 645 (654)
Q Consensus 609 ~~~~~l~~l~~~~~~~~~~q~~--~~~~l~~~a~~~l~~ 645 (654)
.++|+++.|. .+++.+ +..+++..|...|+.
T Consensus 747 ~e~G~i~~L~------~LL~~~d~~~~~i~e~Al~aL~~ 779 (810)
T 3now_A 747 FETDIMELLS------GLGQLPDDTRAKAREVATQCLAA 779 (810)
T ss_dssp HTSTHHHHHT------TSCCCTTSTTHHHHHHHHHHHHH
T ss_pred HHCCCHHHHH------HHHhCcccCcHHHHHHHHHHHHH
Confidence 8999999998 333333 455666666665553
No 5
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=5.4e-35 Score=327.95 Aligned_cols=397 Identities=19% Similarity=0.208 Sum_probs=314.6
Q ss_pred HHcccccCCCHHHHHHHHHHHHHhccCCc-hhHHHHHhcCCHHHHHHhhccCC-HHHHHHHHHHHHHhcCC-cchHHHHH
Q 006250 153 EQIAILHTGSMEEKCDAAASLVSLARDND-RYGKLIIEEGGVPPLLKLAYEGE-LEGQENAARAIGLLGRD-AESVEQIV 229 (654)
Q Consensus 153 ~lV~lL~s~~~~~k~~Aa~aL~~La~~~~-~~~~~I~e~G~Ip~LV~LL~s~~-~~~q~~Aa~AL~nLa~~-~e~~~~iv 229 (654)
.++..|.+++++.+..|+++|++++...+ .+++.+++.|+||.|+.+|++++ +.+|+.|+|+|++|+.+ ++++..++
T Consensus 78 ~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~ 157 (528)
T 4b8j_A 78 AMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVI 157 (528)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 34899999999999999999999965433 67889999999999999999987 99999999999999987 78899999
Q ss_pred HcCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCc---hhhhhHHHHHhhccchhhh
Q 006250 230 NAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFET---VQEHSKYAIASKQNISSLH 306 (654)
Q Consensus 230 ~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~---~~~~~~~al~~~~~~~~i~ 306 (654)
+.|+||+|+++|.++++.+++.|+|+|+||+.+++.+++.+.+.|++++|+.+|.... +.....| .+.
T Consensus 158 ~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~---------~L~ 228 (528)
T 4b8j_A 158 DHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATW---------TLS 228 (528)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHH---------HHH
T ss_pred hCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHH---------HHH
Confidence 9999999999999999999999999999999988999999999999999999995332 1222222 222
Q ss_pred HHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCcc
Q 006250 307 SALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQH 386 (654)
Q Consensus 307 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (654)
.++... +..... ++ .+++|.+
T Consensus 229 ~L~~~~-------------------------------~~~~~~-~~---------------------------~~~l~~L 249 (528)
T 4b8j_A 229 NFCRGK-------------------------------PQPSFE-QT---------------------------RPALPAL 249 (528)
T ss_dssp HHHCSS-------------------------------SCCCHH-HH---------------------------TTHHHHH
T ss_pred HHHcCC-------------------------------CCCcHH-HH---------------------------HHHHHHH
Confidence 222110 000000 00 1223334
Q ss_pred chhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHh
Q 006250 387 QDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITA 466 (654)
Q Consensus 387 ~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa 466 (654)
..++. ..|+ .++..|++||++|+.++....+.+.+.|+++.|+.+|.+++..++..|+++|++|+.
T Consensus 250 ~~lL~----------~~~~----~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~ 315 (528)
T 4b8j_A 250 ARLIH----------SNDE----EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVT 315 (528)
T ss_dssp HHHTT----------CCCH----HHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHC----------CCCH----HHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHc
Confidence 33322 2344 467899999999999998888899999999999999999999999999999999985
Q ss_pred hcccChHhhhhccCCCchHHHHHHHHHHHHhhhc-CcchhhHHHHHHHHhhhcchh-----hhhccHHHHHHHhccCCHH
Q 006250 467 VAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKA-DSDLLIPSIRAIGNLARTFRA-----TETRIIGPLVNLLDEREPE 540 (654)
Q Consensus 467 ~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~-~~~l~~~~~~alg~la~~~~~-----~e~~~I~pLV~lL~~~~~~ 540 (654)
+. +...+..+. .++++.|+.++.+. ++.++..++++|++|+..... .+.+++|+|+++|.+++++
T Consensus 316 ~~---~~~~~~~~~------~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~ 386 (528)
T 4b8j_A 316 GD---DAQTQCIID------HQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFD 386 (528)
T ss_dssp SC---HHHHHHHHT------TTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHH
T ss_pred CC---HHHHHHHHH------hhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHH
Confidence 43 333332222 24688999999988 889999999999999974332 2447899999999999999
Q ss_pred HHHHHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhccCCcchHHHHHHHHHHHHhCCCc------------hHHH
Q 006250 541 VIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIAIKQPE------------SKTL 608 (654)
Q Consensus 541 v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~ia~~~~~------------~~~l 608 (654)
++++|+|+|+|++..+ .+++..++++.|++++|+.+|..+++.++..++.+|.++....+. ...+
T Consensus 387 v~~~a~~aL~nl~~~~---~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i 463 (528)
T 4b8j_A 387 IKKEAAWAISNATSGG---SHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMI 463 (528)
T ss_dssp HHHHHHHHHHHHHHHS---CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCC---CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHH
Confidence 9999999999998664 368899999999999999999999888888899999999543322 2233
Q ss_pred HhhhhhHHHHhhhhhhhhhcCccHHhHHHHHHHHHHhhhcCC
Q 006250 609 AQEEVLIVLEWSFKQAHLVAEPSIEALLPEAKSTLATYQSRD 650 (654)
Q Consensus 609 ~~~~~l~~l~~~~~~~~~~q~~~~~~l~~~a~~~l~~y~~~~ 650 (654)
.+.|++.. +..+++|.+++++.+|..+++.||+..
T Consensus 464 ~~~~~~~~-------l~~L~~~~~~~v~~~a~~il~~~~~~e 498 (528)
T 4b8j_A 464 DEAEGLEK-------IENLQSHDNNEIYEKAVKILEAYWMDE 498 (528)
T ss_dssp HHTTHHHH-------HHHGGGCSSHHHHHHHHHHHHHHCC--
T ss_pred HHCCcHHH-------HHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence 34444444 445678889999999999999999864
No 6
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=2.3e-36 Score=341.78 Aligned_cols=372 Identities=16% Similarity=0.166 Sum_probs=285.5
Q ss_pred cccHHHHHHhhhcChhhH----HHHHHhcCCCC--Ccc--ccccCCCCccccchhhhhHHHHcccccCCCHHHHHHHHHH
Q 006250 101 AAAFRKTLMQLENSLGDV----SWLIRVSASSE--END--DEYLGLPPIAANEPILCLIWEQIAILHTGSMEEKCDAAAS 172 (654)
Q Consensus 101 ~~~l~~l~~lL~~~~~dv----~~lL~~s~~~~--~~~--~~~~~lp~la~~~~i~~~v~~lV~lL~s~~~~~k~~Aa~a 172 (654)
.+++|.|+.+|.+...++ .|.|.++.... .+. ...+++|++ |.+|++++.++|+.|+++
T Consensus 47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~L-------------V~LL~s~~~~vq~~Aa~A 113 (584)
T 3l6x_A 47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVL-------------VGLLDHPKKEVHLGACGA 113 (584)
T ss_dssp CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH-------------HHGGGCSSHHHHHHHHHH
T ss_pred cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHH-------------HHHHCCCCHHHHHHHHHH
Confidence 578999999998776543 35555554322 122 357889888 999999999999999999
Q ss_pred HHHhccC-CchhHHHHHhcCCHHHHHHhhcc-CCHHHHHHHHHHHHHhcCCcchHHHHHHcCchHHHHHhhc--------
Q 006250 173 LVSLARD-NDRYGKLIIEEGGVPPLLKLAYE-GELEGQENAARAIGLLGRDAESVEQIVNAGVCSTFAKNLK-------- 242 (654)
Q Consensus 173 L~~La~~-~~~~~~~I~e~G~Ip~LV~LL~s-~~~~~q~~Aa~AL~nLa~~~e~~~~iv~~GaIp~Lv~LL~-------- 242 (654)
|+||+.. +++++..|+++|+||+||++|++ ++.++|++|+++|+||+.+++++..|++ |+||+|+++|.
T Consensus 114 L~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~ 192 (584)
T 3l6x_A 114 LKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWER 192 (584)
T ss_dssp HHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC-
T ss_pred HHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhcccccccc
Confidence 9999974 68999999999999999999997 4788999999999999999999999995 67999999872
Q ss_pred ----------CCChhHHHHHHHHHHHHhcCChhhHHHHHhC-CcHHHHHHhhccCchhhhhHHHHHhhccchhhhHHHHh
Q 006250 243 ----------DGHMKVQSVVAWAVSELASNHPKCQDHFAQN-NIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVA 311 (654)
Q Consensus 243 ----------s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~-g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~~~ 311 (654)
+.+++++++|+|+|.||+.+++++|+.+++. |++++||.+|++........
T Consensus 193 ~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~------------------ 254 (584)
T 3l6x_A 193 EPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSD------------------ 254 (584)
T ss_dssp ---------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCS------------------
T ss_pred cccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCcc------------------
Confidence 2357999999999999999888889999985 66789999997420000000
Q ss_pred hcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCccchhhh
Q 006250 312 SNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQV 391 (654)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 391 (654)
T Consensus 255 -------------------------------------------------------------------------------- 254 (584)
T 3l6x_A 255 -------------------------------------------------------------------------------- 254 (584)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcC-------------------------ChHHHHHHHhhCcHHHHHHhh
Q 006250 392 LGGTSTKGRESEDPTVKAQMKAMAARALWKLSKG-------------------------NLSICRNLTESRALLCFAVLL 446 (654)
Q Consensus 392 ~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~g-------------------------n~~~~~~i~e~gaL~~L~~LL 446 (654)
.+++++|+++|+||+.+ +......+.+.++++.|+.||
T Consensus 255 -----------------~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL 317 (584)
T 3l6x_A 255 -----------------SKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLL 317 (584)
T ss_dssp -----------------CHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHH
Confidence 00112222222222211 111222334457788999999
Q ss_pred c-cCChhHHHHHHHHHHHHHhhcccCh-HhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhh--
Q 006250 447 E-KGPEDVKHFSAMALMEITAVAEKNS-DLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRAT-- 522 (654)
Q Consensus 447 ~-~~~~~v~~~aa~AL~~Iaa~ae~~~-~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~-- 522 (654)
+ +.+++++.+|+|||+|++++....+ .+|.. +.. ..+++.|++||.+++++++..++++|+||+....+.
T Consensus 318 ~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~-v~~-----~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~ 391 (584)
T 3l6x_A 318 KESKTPAILEASAGAIQNLCAGRWTYGRYIRSA-LRQ-----EKALSAIADLLTNEHERVVKAASGALRNLAVDARNKEL 391 (584)
T ss_dssp HHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHH-HTS-----HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCccccHHHHHH-HHH-----cCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHH
Confidence 6 5678999999999999987642211 22321 111 356899999999999999999999999999865432
Q ss_pred -hhccHHHHHHHhccC--------CHHHHHHHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhccC--CcchHHHH
Q 006250 523 -ETRIIGPLVNLLDER--------EPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFG--EQMIQIPA 591 (654)
Q Consensus 523 -e~~~I~pLV~lL~~~--------~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~--~~~~q~~A 591 (654)
..++||+||++|.++ ..++...|+++|+|++.++ +++.+.|+++|||++|++||+++ .+.++..|
T Consensus 392 I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~----~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~A 467 (584)
T 3l6x_A 392 IGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAEN----LEAAKKLRETQGIEKLVLINKSGNRSEKEVRAA 467 (584)
T ss_dssp HHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTC----HHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHH
T ss_pred HHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCC----HHHHHHHHHCCChHHHHHHHhCCCCChHHHHHH
Confidence 457899999999776 4678999999999997543 78999999999999999999986 66678889
Q ss_pred HHHHHHHHhCCCchHHHHhh
Q 006250 592 LTLLCYIAIKQPESKTLAQE 611 (654)
Q Consensus 592 l~~L~~ia~~~~~~~~l~~~ 611 (654)
..+||++..|...+..+.++
T Consensus 468 a~vL~nl~~~~elr~~~kk~ 487 (584)
T 3l6x_A 468 ALVLQTIWGYKELRKPLEKE 487 (584)
T ss_dssp HHHHHHHHTSHHHHHHHHTT
T ss_pred HHHHHHHHcCHHHHHHHHHc
Confidence 99999998777766666654
No 7
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=6e-36 Score=331.80 Aligned_cols=392 Identities=14% Similarity=0.142 Sum_probs=281.3
Q ss_pred cHHHHHHhhhcChhhH----HHHHHhcCCCCCc-c---ccccCCCCccccchhhhhHHHHcccccCCCHHHHHHHHHHHH
Q 006250 103 AFRKTLMQLENSLGDV----SWLIRVSASSEEN-D---DEYLGLPPIAANEPILCLIWEQIAILHTGSMEEKCDAAASLV 174 (654)
Q Consensus 103 ~l~~l~~lL~~~~~dv----~~lL~~s~~~~~~-~---~~~~~lp~la~~~~i~~~v~~lV~lL~s~~~~~k~~Aa~aL~ 174 (654)
++|.++.+|.+.+.++ .|.+++...+.+. . ...|++|++ |.+|++++++.+..|+++|+
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~L-------------v~lL~s~~~~~~~~A~~aL~ 69 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKL-------------VDLLRSPNQNVQQAAAGALR 69 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHH-------------HHHTTSSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHH-------------HHHHcCCCHHHHHHHHHHHH
Confidence 5788898898766443 3566665433322 1 357788887 99999999999999999999
Q ss_pred HhccCCchhHHHHHhcCCHHHHHHhhc-cCCHHHHHHHHHHHHHhcCCcchHHHHHHcCchHHHHHhh--------cCC-
Q 006250 175 SLARDNDRYGKLIIEEGGVPPLLKLAY-EGELEGQENAARAIGLLGRDAESVEQIVNAGVCSTFAKNL--------KDG- 244 (654)
Q Consensus 175 ~La~~~~~~~~~I~e~G~Ip~LV~LL~-s~~~~~q~~Aa~AL~nLa~~~e~~~~iv~~GaIp~Lv~LL--------~s~- 244 (654)
+|+.++++++..|+++|+||+|+++|+ +++++++++|+|+|+||+.+++++..+++ |++|+|+++| +++
T Consensus 70 nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~ 148 (457)
T 1xm9_A 70 NLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNS 148 (457)
T ss_dssp HHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC----
T ss_pred HHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCcc
Confidence 999888999999999999999999999 88999999999999999999999999999 9999999999 333
Q ss_pred -------ChhHHHHHHHHHHHHhcCChhhHHHHHhC-CcHHHHHHhhccCchh-----hhhHHHHHhhccchhhhHHHHh
Q 006250 245 -------HMKVQSVVAWAVSELASNHPKCQDHFAQN-NIVRFLVSHLAFETVQ-----EHSKYAIASKQNISSLHSALVA 311 (654)
Q Consensus 245 -------~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~-g~I~~LV~LL~~~~~~-----~~~~~al~~~~~~~~i~~l~~~ 311 (654)
+++++..|+|+|+||+.+ +++++.+++. |++++|+.+|+++... .....++. .+++++
T Consensus 149 ~~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~------~L~nLs-- 219 (457)
T 1xm9_A 149 NMSREVVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMC------VLHNLS-- 219 (457)
T ss_dssp -----CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHH------HHHHHT--
T ss_pred chhcccccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHH------HHHhcc--
Confidence 345666999999999995 8999999997 9999999999853100 00001010 111111
Q ss_pred hcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCccchhhh
Q 006250 312 SNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQV 391 (654)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 391 (654)
|. .+..+..+. ..+.
T Consensus 220 --------------------------~~--------~~~~~~~~~-------------------------------~~~~ 234 (457)
T 1xm9_A 220 --------------------------YR--------LDAEVPTRY-------------------------------RQLE 234 (457)
T ss_dssp --------------------------TT--------HHHHSCCHH-------------------------------HHHH
T ss_pred --------------------------cc--------hhccCcchh-------------------------------hhcc
Confidence 00 000000000 0000
Q ss_pred hcCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---------------cCChHHHHHHHhhCcHHHHHHhhccC-ChhHHH
Q 006250 392 LGGTSTKGRESEDPTVKAQMKAMAARALWKLS---------------KGNLSICRNLTESRALLCFAVLLEKG-PEDVKH 455 (654)
Q Consensus 392 ~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La---------------~gn~~~~~~i~e~gaL~~L~~LL~~~-~~~v~~ 455 (654)
. ..+.. .. ......++++.. .++++..+.+.+.|++++|+.||+++ +++++.
T Consensus 235 ~---~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e 302 (457)
T 1xm9_A 235 Y---NARNA-YT--------EKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLE 302 (457)
T ss_dssp H---TC-------------------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHH
T ss_pred c---ccccc-cc--------cccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHH
Confidence 0 00000 00 000111122211 12344566678889999999999876 589999
Q ss_pred HHHHHHHHHHhhcccCh-HhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhh---hhccHHHHH
Q 006250 456 FSAMALMEITAVAEKNS-DLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRAT---ETRIIGPLV 531 (654)
Q Consensus 456 ~aa~AL~~Iaa~ae~~~-~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~---e~~~I~pLV 531 (654)
.|+|||+||+++..... .+.|..+.. .++++.|++++.+++++++..++++|.|++...... ..++|||||
T Consensus 303 ~a~~aL~nl~~~~~~~~~~~~~~~v~~-----~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv 377 (457)
T 1xm9_A 303 ACAGALQNLTASKGLMSSGMSQLIGLK-----EKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVT 377 (457)
T ss_dssp HHHHHHHHHTTCSSSHHHHHHHHHHTT-----SCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHH
T ss_pred HHHHHHHHhccCcCcchHHHHHHHHHH-----cCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHH
Confidence 99999999997654322 342322211 135789999999999999999999999999865442 357899999
Q ss_pred HHhccCCH------HHHHHHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhccC-CcchHHHHHHHHHHHHhCCC
Q 006250 532 NLLDEREP------EVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFG-EQMIQIPALTLLCYIAIKQP 603 (654)
Q Consensus 532 ~lL~~~~~------~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~-~~~~q~~Al~~L~~ia~~~~ 603 (654)
++|..+++ ++...++++|.|+..++ +++++.|.++||+++|++|+.++ ++.+...|...|.++..+..
T Consensus 378 ~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~----~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~ 452 (457)
T 1xm9_A 378 RLLTSHTGNTSNSEDILSSACYTVRNLMASQ----PQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HTTTSCCSCSTTHHHHHHHHHHHHHHHHTTC----THHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred HhccCCCCCCCCcHHHHHHHHHHHHHHHhcC----HHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence 99987643 68889999999997543 57899999999999999999998 77788889999998854443
No 8
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=3.6e-35 Score=324.66 Aligned_cols=317 Identities=17% Similarity=0.183 Sum_probs=261.6
Q ss_pred cccccC------------CCHHHHHHHHHHHHHhccCCchhHHHHHhcCCH----------HHHHHhhccCC--HH----
Q 006250 155 IAILHT------------GSMEEKCDAAASLVSLARDNDRYGKLIIEEGGV----------PPLLKLAYEGE--LE---- 206 (654)
Q Consensus 155 V~lL~s------------~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~I----------p~LV~LL~s~~--~~---- 206 (654)
|++|+. ++++.+.+|+|+|.|++..+++..+...+.|++ +.+++++.+.. .+
T Consensus 76 v~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (458)
T 3nmz_A 76 IQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKN 155 (458)
T ss_dssp HHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSC
T ss_pred HHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccC
Confidence 888885 447999999999999998778888888898988 77888887652 22
Q ss_pred -HHH-------HHHHHHHHhcCCcchHHHHHHcCchHHHHHhhcC-----------CChhHHHHHHHHHHHHhcCChhhH
Q 006250 207 -GQE-------NAARAIGLLGRDAESVEQIVNAGVCSTFAKNLKD-----------GHMKVQSVVAWAVSELASNHPKCQ 267 (654)
Q Consensus 207 -~q~-------~Aa~AL~nLa~~~e~~~~iv~~GaIp~Lv~LL~s-----------~~~~vq~~Aa~aL~nLa~~~~~~r 267 (654)
+++ +|+|+|+||+.++++|..|++.|++++|+.+|.. .++.+|..|+|+|.||+.+++.++
T Consensus 156 ~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k 235 (458)
T 3nmz_A 156 PMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANK 235 (458)
T ss_dssp C--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccH
Confidence 333 9999999999999999999999999999999952 236789999999999999777788
Q ss_pred HHHHhC-CcHHHHHHhhccCchhhhhHHHHHhhccchhhhHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCc
Q 006250 268 DHFAQN-NIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANS 346 (654)
Q Consensus 268 ~~i~~~-g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 346 (654)
..+... |+||+||.+|++++
T Consensus 236 ~~i~~~~GaIp~LV~LL~s~~----------------------------------------------------------- 256 (458)
T 3nmz_A 236 ATLCSMKGCMRALVAQLKSES----------------------------------------------------------- 256 (458)
T ss_dssp HHHHHCHHHHHHHHHGGGCSC-----------------------------------------------------------
T ss_pred HHHHHcCCcHHHHHHHHhCCC-----------------------------------------------------------
Confidence 888765 55999999997532
Q ss_pred chhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcC-
Q 006250 347 SISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKG- 425 (654)
Q Consensus 347 ~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~g- 425 (654)
..++..|++||++|+.+
T Consensus 257 --------------------------------------------------------------~~v~~~A~~aL~nLs~~~ 274 (458)
T 3nmz_A 257 --------------------------------------------------------------EDLQQVIASVLRNLSWRA 274 (458)
T ss_dssp --------------------------------------------------------------HHHHHHHHHHHHHHTSSC
T ss_pred --------------------------------------------------------------HHHHHHHHHHHHHHhcCC
Confidence 12567899999999986
Q ss_pred ChHHHHHHHhhCcHHHHHHh-hccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCc--
Q 006250 426 NLSICRNLTESRALLCFAVL-LEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADS-- 502 (654)
Q Consensus 426 n~~~~~~i~e~gaL~~L~~L-L~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~-- 502 (654)
++++...|.+.|+++.|+.+ +++++.+++++++.||+||+... .+.+.. +.. ..++++.|++++.+.++
T Consensus 275 ~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~---~~nk~~-I~~----~~Gal~~Lv~LL~~~~~~~ 346 (458)
T 3nmz_A 275 DVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC---TENKAD-ICA----VDGALAFLVGTLTYRSQTN 346 (458)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHC---HHHHHH-HHH----STTHHHHHHHHTTCCCSSS
T ss_pred CHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCC---HHHHHH-HHH----hcCcHHHHHHHhcCCCCcc
Confidence 67888999999999999997 56678899999999999998632 222221 100 13578999999987765
Q ss_pred --chhhHHHHHHHHhhh----cchh----hhhccHHHHHHHhccCCHHHHHHHHHHHHhccccCCCCCHHHHHHHHHCCC
Q 006250 503 --DLLIPSIRAIGNLAR----TFRA----TETRIIGPLVNLLDEREPEVIMEATVALNKFATTENYLSETHSKAIINAGG 572 (654)
Q Consensus 503 --~l~~~~~~alg~la~----~~~~----~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~gg 572 (654)
+++..++++|.||+. +... .+.++||+||.+|++++.+++++|+|||+|++.+ ++++...|+++|+
T Consensus 347 ~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~----~~~~~~~i~~~G~ 422 (458)
T 3nmz_A 347 TLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR----NPKDQEALWDMGA 422 (458)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS----CHHHHHHHHHHTH
T ss_pred hHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC----CHHHHHHHHHCCC
Confidence 389999999999995 2222 2457899999999999999999999999999753 3688999999999
Q ss_pred HHHHHHhhccCCcchHHHHHHHHHHHHhCCCc
Q 006250 573 VKHLIQLVYFGEQMIQIPALTLLCYIAIKQPE 604 (654)
Q Consensus 573 i~~Lv~LL~~~~~~~q~~Al~~L~~ia~~~~~ 604 (654)
|++|++||+++++.++..|+++|.+++.+.|.
T Consensus 423 I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p~ 454 (458)
T 3nmz_A 423 VSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 454 (458)
T ss_dssp HHHHHTTTTCSSHHHHHHHHHHHHHHHTCCSC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHh
Confidence 99999999999988899999999999876653
No 9
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=5.7e-34 Score=322.24 Aligned_cols=353 Identities=18% Similarity=0.215 Sum_probs=274.4
Q ss_pred cccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCC--cchHHHHHHcC
Q 006250 155 IAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRD--AESVEQIVNAG 232 (654)
Q Consensus 155 V~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~--~e~~~~iv~~G 232 (654)
|.+|++++++.|..|+++|.+++..+++++..|++.|+||+||++|++++.++|++|+|||+||+.+ ++++..|+++|
T Consensus 54 V~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~G 133 (584)
T 3l6x_A 54 IAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCD 133 (584)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTT
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcC
Confidence 9999999999999999999999987799999999999999999999999999999999999999984 79999999999
Q ss_pred chHHHHHhhcC-CChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHHHHh
Q 006250 233 VCSTFAKNLKD-GHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVA 311 (654)
Q Consensus 233 aIp~Lv~LL~s-~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~~~ 311 (654)
+||+||++|++ ++.+++++++++|.||+. +++++..|++ ++||+|+.+|... ++-| .
T Consensus 134 aIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~p----~sg~----~------------ 191 (584)
T 3l6x_A 134 GVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEVIIP----HSGW----E------------ 191 (584)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHTHHH----HHCC----C------------
T ss_pred CHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHHhcc----cccc----c------------
Confidence 99999999997 578999999999999999 7799999996 5799999998421 1000 0
Q ss_pred hcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCccchhhh
Q 006250 312 SNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQV 391 (654)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 391 (654)
++++
T Consensus 192 ------------------------------~~~~---------------------------------------------- 195 (584)
T 3l6x_A 192 ------------------------------REPN---------------------------------------------- 195 (584)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------------------------cccc----------------------------------------------
Confidence 0000
Q ss_pred hcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhh-CcHHHHHHhhcc------CChhHHHHHHHHHHHH
Q 006250 392 LGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTES-RALLCFAVLLEK------GPEDVKHFSAMALMEI 464 (654)
Q Consensus 392 ~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~-gaL~~L~~LL~~------~~~~v~~~aa~AL~~I 464 (654)
...|.+..+|+ .++.+|+++|.||+..+.+..+.|.+. |.+++|+.+|++ .+...+.+|+|+|+|+
T Consensus 196 ---~~~k~~~~~d~----~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NL 268 (584)
T 3l6x_A 196 ---EDCKPRHIEWE----SVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNL 268 (584)
T ss_dssp ---------CCCCH----HHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHH
T ss_pred ---ccccccccccH----HHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHh
Confidence 00011123344 467899999999999888888888886 555799999985 4568999999999999
Q ss_pred HhhcccC-hH---hhhh---------ccCCCch---HHHHHHHHHHHHhhhc-CcchhhHHHHHHHHhhhcc-------h
Q 006250 465 TAVAEKN-SD---LRRS---------AFKPTST---AAKAVLEQLLHIVEKA-DSDLLIPSIRAIGNLARTF-------R 520 (654)
Q Consensus 465 aa~ae~~-~~---lrr~---------a~~~~s~---~~~~vv~~L~~ll~~~-~~~l~~~~~~alg~la~~~-------~ 520 (654)
+...+.. +. +... ....... -...+|..|+.++... ++.+++++++||+||++.- +
T Consensus 269 s~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~ 348 (584)
T 3l6x_A 269 SYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIR 348 (584)
T ss_dssp HTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHH
T ss_pred hccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHH
Confidence 8653210 00 0000 0000000 0023578899999754 5899999999999998632 1
Q ss_pred h--hhhccHHHHHHHhccCCHHHHHHHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhccCC--------cchHHH
Q 006250 521 A--TETRIIGPLVNLLDEREPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGE--------QMIQIP 590 (654)
Q Consensus 521 ~--~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~--------~~~q~~ 590 (654)
. .+.+++|+||+||.+.+.++++.|+|||+|++.+.+ +.. +++.||+++||+||.+++ +.++..
T Consensus 349 ~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~-----~~~-~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~ 422 (584)
T 3l6x_A 349 SALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDAR-----NKE-LIGKHAIPNLVKNLPGGQQNSSWNFSEDTVIS 422 (584)
T ss_dssp HHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCS-----CHH-HHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHH
T ss_pred HHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChh-----HHH-HHHhCCHHHHHHHhcCCcccccccchHHHHHH
Confidence 1 234789999999999999999999999999985432 233 448899999999999873 235677
Q ss_pred HHHHHHHHHhC-CCchHHHHhhhhhHHHH
Q 006250 591 ALTLLCYIAIK-QPESKTLAQEEVLIVLE 618 (654)
Q Consensus 591 Al~~L~~ia~~-~~~~~~l~~~~~l~~l~ 618 (654)
|+.+|.|++.. ..+...+.++|+++.|.
T Consensus 423 a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv 451 (584)
T 3l6x_A 423 ILNTINEVIAENLEAAKKLRETQGIEKLV 451 (584)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHCCChHHHH
Confidence 99999999754 44567788999999998
No 10
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=1.6e-33 Score=316.57 Aligned_cols=402 Identities=17% Similarity=0.171 Sum_probs=315.5
Q ss_pred HHHHcccccCCCHHHHHHHHHHHHHhccC-CchhHHHHHhcCCHHHHHHhhccC-CHHHHHHHHHHHHHhcCC-cchHHH
Q 006250 151 IWEQIAILHTGSMEEKCDAAASLVSLARD-NDRYGKLIIEEGGVPPLLKLAYEG-ELEGQENAARAIGLLGRD-AESVEQ 227 (654)
Q Consensus 151 v~~lV~lL~s~~~~~k~~Aa~aL~~La~~-~~~~~~~I~e~G~Ip~LV~LL~s~-~~~~q~~Aa~AL~nLa~~-~e~~~~ 227 (654)
+..++..|++++++.+..|+.+|+++... +..+++.+++.|++|.|+.+|+++ ++.+|..|+|+|++|+.+ ++.+..
T Consensus 89 i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 168 (530)
T 1wa5_B 89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKV 168 (530)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 45568999999999999999999999643 345678889999999999999997 799999999999999986 578889
Q ss_pred HHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCc--hhhhhHHHHHhhccchhh
Q 006250 228 IVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFET--VQEHSKYAIASKQNISSL 305 (654)
Q Consensus 228 iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~--~~~~~~~al~~~~~~~~i 305 (654)
+++.|++|.|+++|+++++++++.|+|+|++|+.+++++++.+.+.|++++|+.+|.+.. +.....+ .+
T Consensus 169 ~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~---------~L 239 (530)
T 1wa5_B 169 VVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATW---------TL 239 (530)
T ss_dssp HHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHH---------HH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHH---------HH
Confidence 999999999999999999999999999999999988899999999999999999998743 1122212 22
Q ss_pred hHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCc
Q 006250 306 HSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQ 385 (654)
Q Consensus 306 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (654)
..++..... .....+. .+.+|.
T Consensus 240 ~~L~~~~~~--------------------------------~~~~~~~--------------------------~~~l~~ 261 (530)
T 1wa5_B 240 SNLCRGKKP--------------------------------QPDWSVV--------------------------SQALPT 261 (530)
T ss_dssp HHHHCCSSS--------------------------------CCCHHHH--------------------------GGGHHH
T ss_pred HHHhCCCCC--------------------------------CCcHHHH--------------------------HhHHHH
Confidence 223211000 0001111 122233
Q ss_pred cchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHH
Q 006250 386 HQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEIT 465 (654)
Q Consensus 386 ~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Ia 465 (654)
+..++. .+|+ .++..|+++|++|+.++++..+.+.+.|+++.|+.+|++++..++..|+++|++|+
T Consensus 262 L~~lL~----------~~d~----~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~ 327 (530)
T 1wa5_B 262 LAKLIY----------SMDT----ETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 327 (530)
T ss_dssp HHHHTT----------CCCH----HHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHc----------CCCH----HHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHH
Confidence 333322 2344 46789999999999999998999999999999999999999999999999999998
Q ss_pred hhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchh-----hhhccHHHHHHHhccCCHH
Q 006250 466 AVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRA-----TETRIIGPLVNLLDEREPE 540 (654)
Q Consensus 466 a~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~-----~e~~~I~pLV~lL~~~~~~ 540 (654)
.+. ++..+..+ ..++++.|+.++.+.++.++..++++|++++..... .+.+++|+|+++|++.+++
T Consensus 328 ~~~---~~~~~~~~------~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~ 398 (530)
T 1wa5_B 328 TGN---DLQTQVVI------NAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYK 398 (530)
T ss_dssp TSC---HHHHHHHH------HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHH
T ss_pred cCC---HHHHHHHH------HcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHH
Confidence 543 23333211 124788999999998899999999999999974332 2357999999999999999
Q ss_pred HHHHHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhccCCcchHHHHHHHHHHHHhCCCch------------HHH
Q 006250 541 VIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIAIKQPES------------KTL 608 (654)
Q Consensus 541 v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~ia~~~~~~------------~~l 608 (654)
++++|+|+|++++..++. .+++.+.+++.|++++|+.+|..+++.++..++.+|.++....+.. ..+
T Consensus 399 v~~~a~~aL~~l~~~~~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l 477 (530)
T 1wa5_B 399 TKKEACWAISNASSGGLQ-RPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFI 477 (530)
T ss_dssp HHHHHHHHHHHHHHHTTT-CTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCC-cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHH
Confidence 999999999999865421 1278899999999999999999888888888999999996543321 234
Q ss_pred HhhhhhHHHHhhhhhhhhhcCccHHhHHHHHHHHHHhhhcCC
Q 006250 609 AQEEVLIVLEWSFKQAHLVAEPSIEALLPEAKSTLATYQSRD 650 (654)
Q Consensus 609 ~~~~~l~~l~~~~~~~~~~q~~~~~~l~~~a~~~l~~y~~~~ 650 (654)
.+.|++..|+ .++++..++++.+|..+|+.||+..
T Consensus 478 ~~~g~~~~L~-------~L~~~~~~~v~~~a~~il~~~~~~~ 512 (530)
T 1wa5_B 478 EKAGGMEKIF-------NCQQNENDKIYEKAYKIIETYFGEE 512 (530)
T ss_dssp HHTTHHHHHH-------GGGGCSCHHHHHHHHHHHHHHSSSC
T ss_pred HHcCcHHHHH-------HHHcCCCHHHHHHHHHHHHHHCCcc
Confidence 4455555554 4577788999999999999999754
No 11
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=1.1e-34 Score=338.19 Aligned_cols=347 Identities=15% Similarity=0.135 Sum_probs=280.2
Q ss_pred HHHHHHhhhcC--h----hhHHHHHHhcCCCCC-cc---ccccCCCCccccchhhhhHHHHcccccCCCHHHHHHHHHHH
Q 006250 104 FRKTLMQLENS--L----GDVSWLIRVSASSEE-ND---DEYLGLPPIAANEPILCLIWEQIAILHTGSMEEKCDAAASL 173 (654)
Q Consensus 104 l~~l~~lL~~~--~----~dv~~lL~~s~~~~~-~~---~~~~~lp~la~~~~i~~~v~~lV~lL~s~~~~~k~~Aa~aL 173 (654)
++.+..+|.+. . .+..|.|...+.+.+ +. ...+.+|++ |.+|++++...+..|+++|
T Consensus 379 v~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~L-------------V~LL~s~d~~i~~~al~~L 445 (810)
T 3now_A 379 AEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHAL-------------MDLARGGNQSCLYGVVTTF 445 (810)
T ss_dssp HHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHH-------------HHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHH-------------HHHhCCCChHHHHHHHHHH
Confidence 34455666554 2 234566666654432 21 235667776 9999999999999999999
Q ss_pred HHhccCCc-----------------------------hhH---HHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCC
Q 006250 174 VSLARDND-----------------------------RYG---KLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRD 221 (654)
Q Consensus 174 ~~La~~~~-----------------------------~~~---~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~ 221 (654)
.|++.+++ .++ +.|+++|+||+|+.||+++++.+|++|+|+|+||+.+
T Consensus 446 ~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d 525 (810)
T 3now_A 446 VNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL 525 (810)
T ss_dssp HHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 99997542 123 7899999999999999999999999999999999999
Q ss_pred cchHHHHHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhcC-ChhhHHHH---HhCCcHHHHHHhhccCchhhhhHHHHH
Q 006250 222 AESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASN-HPKCQDHF---AQNNIVRFLVSHLAFETVQEHSKYAIA 297 (654)
Q Consensus 222 ~e~~~~iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~-~~~~r~~i---~~~g~I~~LV~LL~~~~~~~~~~~al~ 297 (654)
++++..++++|++|+|+.+|+++++..|+.|+|+|+||+.+ +++. .+ ...|+||+|+.||.++. .
T Consensus 526 ~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~--~~~~~~~~~aIppLv~LL~~~~----~----- 594 (810)
T 3now_A 526 KELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEV--SFSGQRSLDVIRPLLNLLQQDC----T----- 594 (810)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHH--HTTTHHHHHTHHHHHHTTSTTS----C-----
T ss_pred HHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhh--hhcchhhhcHHHHHHHHhCCCC----c-----
Confidence 89999999999999999999999999999999999999863 3322 11 11368999999996321 0
Q ss_pred hhccchhhhHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccc
Q 006250 298 SKQNISSLHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYA 377 (654)
Q Consensus 298 ~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~ 377 (654)
T Consensus 595 -------------------------------------------------------------------------------- 594 (810)
T 3now_A 595 -------------------------------------------------------------------------------- 594 (810)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHH
Q 006250 378 MQPNHHNQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFS 457 (654)
Q Consensus 378 ~~~~~~~~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~a 457 (654)
...+..|++||.||+.+++++++.|++.|+++.|+.||.++++.||+.|
T Consensus 595 -------------------------------~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A 643 (810)
T 3now_A 595 -------------------------------ALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAA 643 (810)
T ss_dssp -------------------------------HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHH
T ss_pred -------------------------------HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHH
Confidence 0123468999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchh-----hh-hccHHHHH
Q 006250 458 AMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRA-----TE-TRIIGPLV 531 (654)
Q Consensus 458 a~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~-----~e-~~~I~pLV 531 (654)
+++|+||+.+. +.+.. |..+. ++++.|+.++.+++.+++..++++|++|+..... .+ .++||||+
T Consensus 644 ~~~L~NLa~~~----~~~~~-~v~~~----g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv 714 (810)
T 3now_A 644 AQCLCNLVMSE----DVIKM-FEGNN----DRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILH 714 (810)
T ss_dssp HHHHHHHTTSH----HHHHH-HHSSS----SHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHH
T ss_pred HHHHHHHhCCh----HHHHH-HHhcc----CcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHH
Confidence 99999998543 33432 22222 3678999999998999999999999999973322 23 57999999
Q ss_pred HHhccCCHHHHHHHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhccCC---cchHHHHHHHHHHH
Q 006250 532 NLLDEREPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGE---QMIQIPALTLLCYI 598 (654)
Q Consensus 532 ~lL~~~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~---~~~q~~Al~~L~~i 598 (654)
++|++++++++++|+|+|+|+++++ .++.++|+++||+++|++||+.+| ..+...|+.+|.++
T Consensus 715 ~LL~s~d~~vq~~A~~aL~NL~~~s----~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~l 780 (810)
T 3now_A 715 TLIANPSPAVQHRGIVIILNMINAG----EEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAA 780 (810)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHTTC----HHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHHHhCC----HHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHH
Confidence 9999999999999999999998643 688999999999999999998763 34444588988888
No 12
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=9.7e-34 Score=319.33 Aligned_cols=378 Identities=20% Similarity=0.231 Sum_probs=304.6
Q ss_pred HHHHHHHHHhhCCcccchhcccCcccHHHHHHhhhcCh-h----hHHHHHHhcCCCCCcc----ccccCCCCccccchhh
Q 006250 78 KAMQLVVKCRANGILKRVFTIIPAAAFRKTLMQLENSL-G----DVSWLIRVSASSEEND----DEYLGLPPIAANEPIL 148 (654)
Q Consensus 78 ~a~~l~~~C~~~g~~~r~~~i~~~~~l~~l~~lL~~~~-~----dv~~lL~~s~~~~~~~----~~~~~lp~la~~~~i~ 148 (654)
.|...+|+.-....-+..-.++..|.+|.|+.+|..+. . ...|.|.+++.+.... ...|++|++
T Consensus 95 ~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~L------- 167 (529)
T 3tpo_A 95 QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAF------- 167 (529)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHH-------
T ss_pred HHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHH-------
Confidence 44455555422222222335678999999999996433 3 3568888877654321 357788887
Q ss_pred hhHHHHcccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCC-----HHHHHHHHHHHHHhcCCcc
Q 006250 149 CLIWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGE-----LEGQENAARAIGLLGRDAE 223 (654)
Q Consensus 149 ~~v~~lV~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~-----~~~q~~Aa~AL~nLa~~~e 223 (654)
+.+|++++.++++.|+++|++|+.+++.++..|++.|++++|+.+|...+ ...+++++|+|.+++.+..
T Consensus 168 ------v~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~ 241 (529)
T 3tpo_A 168 ------ISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKN 241 (529)
T ss_dssp ------HHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCT
T ss_pred ------HHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999988999999999999999999998664 3578899999999998754
Q ss_pred -hHHHHHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccc
Q 006250 224 -SVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNI 302 (654)
Q Consensus 224 -~~~~iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~ 302 (654)
........|++|.|+++|.+++++++..++|+|++|+.++++..+.+.+.|+++.|+.+|.+++
T Consensus 242 ~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~--------------- 306 (529)
T 3tpo_A 242 PAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE--------------- 306 (529)
T ss_dssp TCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSC---------------
T ss_pred chhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCC---------------
Confidence 3444556789999999999999999999999999999988888899999999999999996431
Q ss_pred hhhhHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCC
Q 006250 303 SSLHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNH 382 (654)
Q Consensus 303 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (654)
T Consensus 307 -------------------------------------------------------------------------------- 306 (529)
T 3tpo_A 307 -------------------------------------------------------------------------------- 306 (529)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHH
Q 006250 383 HNQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALM 462 (654)
Q Consensus 383 ~~~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~ 462 (654)
..++..|++||++|++|++.++..+.+.|++++|+.||+++++++|++|||+|+
T Consensus 307 --------------------------~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~ 360 (529)
T 3tpo_A 307 --------------------------LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMS 360 (529)
T ss_dssp --------------------------HHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHH
T ss_pred --------------------------hhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 124567999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchh------hhhccHHHHHHHhcc
Q 006250 463 EITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRA------TETRIIGPLVNLLDE 536 (654)
Q Consensus 463 ~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~------~e~~~I~pLV~lL~~ 536 (654)
+|+++.. +.+... ...++++.|+.++.+++.+++..|+++|+|++..... .+.|+|+||+++|++
T Consensus 361 nl~~~~~---~~~~~v------~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~ 431 (529)
T 3tpo_A 361 NITAGRQ---DQIQQV------VNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA 431 (529)
T ss_dssp HHHTSCH---HHHHHH------HHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGC
T ss_pred HHhcccH---HHHHHH------HhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcC
Confidence 9997543 333321 1135788999999999999999999999999874322 356899999999999
Q ss_pred CCHHHHHHHHHHHHhcccc-CCCCC-HHHHHHHHHCCCHHHHHHhhccCCcchHHHHHHHHHHH
Q 006250 537 REPEVIMEATVALNKFATT-ENYLS-ETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYI 598 (654)
Q Consensus 537 ~~~~v~~eAa~AL~~~a~~-~n~~~-~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~i 598 (654)
.+.++...+.++|.|+..- +...+ ..-+..|.++||++.|-.|.++.++.+...|...|...
T Consensus 432 ~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 495 (529)
T 3tpo_A 432 KDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 495 (529)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 9999999999999887521 11112 23356678999999999998888777777788887543
No 13
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=8.8e-34 Score=318.48 Aligned_cols=380 Identities=20% Similarity=0.227 Sum_probs=306.2
Q ss_pred HHHHHHHHHHHhhCCcccchhcccCcccHHHHHHhhhcC-hh----hHHHHHHhcCCCCCcc----ccccCCCCccccch
Q 006250 76 LDKAMQLVVKCRANGILKRVFTIIPAAAFRKTLMQLENS-LG----DVSWLIRVSASSEEND----DEYLGLPPIAANEP 146 (654)
Q Consensus 76 l~~a~~l~~~C~~~g~~~r~~~i~~~~~l~~l~~lL~~~-~~----dv~~lL~~s~~~~~~~----~~~~~lp~la~~~~ 146 (654)
.-+|..-+|++-....-+..=.|+..|.+|.|+.+|..+ .. ...|.|++++++.... .+.|++|++
T Consensus 74 q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~L----- 148 (510)
T 3ul1_B 74 QLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAF----- 148 (510)
T ss_dssp HHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHH-----
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHH-----
Confidence 344555667664322222334567899999999999743 33 3568999886654321 357788887
Q ss_pred hhhhHHHHcccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCC-----HHHHHHHHHHHHHhcCC
Q 006250 147 ILCLIWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGE-----LEGQENAARAIGLLGRD 221 (654)
Q Consensus 147 i~~~v~~lV~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~-----~~~q~~Aa~AL~nLa~~ 221 (654)
+.+|++++.++|+.|+++|++++.+++.+++.+.+.|++++|+.+|++.+ ...+++++|+|.|++.+
T Consensus 149 --------v~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~ 220 (510)
T 3ul1_B 149 --------ISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN 220 (510)
T ss_dssp --------HHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCC
T ss_pred --------HHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999988999999999999999999998765 35788999999999987
Q ss_pred cch-HHHHHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhc
Q 006250 222 AES-VEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQ 300 (654)
Q Consensus 222 ~e~-~~~iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~ 300 (654)
... .......|++|.|+++|.+++++++..++|+|++|+.++++..+.+.+.|+++.|+.+|++++
T Consensus 221 ~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~------------- 287 (510)
T 3ul1_B 221 KNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE------------- 287 (510)
T ss_dssp CSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSC-------------
T ss_pred ccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCC-------------
Confidence 543 344555789999999999999999999999999999988888888999999999999996431
Q ss_pred cchhhhHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCC
Q 006250 301 NISSLHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQP 380 (654)
Q Consensus 301 ~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~ 380 (654)
T Consensus 288 -------------------------------------------------------------------------------- 287 (510)
T 3ul1_B 288 -------------------------------------------------------------------------------- 287 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHH
Q 006250 381 NHHNQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMA 460 (654)
Q Consensus 381 ~~~~~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~A 460 (654)
..++..|+++|++|++|++.++..+.+.|++++|+.||++++.++|++|||+
T Consensus 288 ----------------------------~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~a 339 (510)
T 3ul1_B 288 ----------------------------LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWT 339 (510)
T ss_dssp ----------------------------HHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHH
T ss_pred ----------------------------hhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHH
Confidence 1245689999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchh------hhhccHHHHHHHh
Q 006250 461 LMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRA------TETRIIGPLVNLL 534 (654)
Q Consensus 461 L~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~------~e~~~I~pLV~lL 534 (654)
|+||+++.. +.++..+ ..++++.|+.++.+++.+++..|+++|+|++..... .+.|+|+||+++|
T Consensus 340 L~nl~a~~~---~~~~~v~------~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL 410 (510)
T 3ul1_B 340 MSNITAGRQ---DQIQQVV------NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLL 410 (510)
T ss_dssp HHHHTTSCH---HHHHHHH------HTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGG
T ss_pred HHHHHcCcH---HHHHHHH------hcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHh
Confidence 999986543 3333211 135788999999999999999999999999974332 3568999999999
Q ss_pred ccCCHHHHHHHHHHHHhccccC-CCCC-HHHHHHHHHCCCHHHHHHhhccCCcchHHHHHHHHHHH
Q 006250 535 DEREPEVIMEATVALNKFATTE-NYLS-ETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYI 598 (654)
Q Consensus 535 ~~~~~~v~~eAa~AL~~~a~~~-n~~~-~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~i 598 (654)
++.+.++...+.++|.|+..-+ .... ...+..|.++||++.|-.|.++.++.+...|...|...
T Consensus 411 ~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 476 (510)
T 3ul1_B 411 SAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 476 (510)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 9999999999999998875211 1111 23456678899999999998888777777788888644
No 14
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=100.00 E-value=8e-34 Score=304.68 Aligned_cols=274 Identities=17% Similarity=0.206 Sum_probs=230.1
Q ss_pred HHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhcc-----------CCHHHHHHHHHHHHHhcCCc-chHHHHHH
Q 006250 163 MEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYE-----------GELEGQENAARAIGLLGRDA-ESVEQIVN 230 (654)
Q Consensus 163 ~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s-----------~~~~~q~~Aa~AL~nLa~~~-e~~~~iv~ 230 (654)
...+.+|+++|.+++.+ +++|+.|++.|++++|+.+|.+ .++.+|++|+|+|.||+.++ +++..+..
T Consensus 46 ~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~ 124 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124 (354)
T ss_dssp GGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35567899999999987 8999999999999999999953 23679999999999999876 47777765
Q ss_pred c-CchHHHHHhhcCCChhHHHHHHHHHHHHhcC-ChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHH
Q 006250 231 A-GVCSTFAKNLKDGHMKVQSVVAWAVSELASN-HPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSA 308 (654)
Q Consensus 231 ~-GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~-~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l 308 (654)
. |+||+||++|+++++++|+.|+|+|.||+.+ ++++|+.|++.|+||+||.+|....
T Consensus 125 ~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~--------------------- 183 (354)
T 3nmw_A 125 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK--------------------- 183 (354)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCC---------------------
T ss_pred cCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCC---------------------
Confidence 5 5599999999999999999999999999984 5789999999999999999863210
Q ss_pred HHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCccch
Q 006250 309 LVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQD 388 (654)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (654)
T Consensus 184 -------------------------------------------------------------------------------- 183 (354)
T 3nmw_A 184 -------------------------------------------------------------------------------- 183 (354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHH-hhCcHHHHHHhhccCCh----hHHHHHHHHHHH
Q 006250 389 QQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLT-ESRALLCFAVLLEKGPE----DVKHFSAMALME 463 (654)
Q Consensus 389 ~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~-e~gaL~~L~~LL~~~~~----~v~~~aa~AL~~ 463 (654)
+ ..+++.|++|||+|+.++++++..|. +.|++++|+.+|+++++ +++++|+|+|++
T Consensus 184 ---------------~----~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~n 244 (354)
T 3nmw_A 184 ---------------K----ESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRN 244 (354)
T ss_dssp ---------------C----HHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHH
T ss_pred ---------------C----HHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHH
Confidence 0 12456899999999998988888888 78999999999998765 499999999999
Q ss_pred HHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhhhhccHHHHHHHhccCCHHHHH
Q 006250 464 ITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRATETRIIGPLVNLLDEREPEVIM 543 (654)
Q Consensus 464 Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~e~~~I~pLV~lL~~~~~~v~~ 543 (654)
|+.....+++.++ .++ +.++||+||++|++++.++++
T Consensus 245 Ls~~~a~~~~~~~------------------~i~-------------------------~~g~i~~Lv~lL~~~~~~v~~ 281 (354)
T 3nmw_A 245 VSSLIATNEDHRQ------------------ILR-------------------------ENNCLQTLLQHLKSHSLTIVS 281 (354)
T ss_dssp HHHHHTTCHHHHH------------------HHH-------------------------TTTHHHHHHHHTTCSCHHHHH
T ss_pred HHhhccCCHHHHH------------------HHH-------------------------HcCCHHHHHHHHcCCChHHHH
Confidence 9851101222221 011 247899999999999999999
Q ss_pred HHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhccCCcchHHHHHHHHHHHHhCCCc
Q 006250 544 EATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIAIKQPE 604 (654)
Q Consensus 544 eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~ia~~~~~ 604 (654)
+|+|+|+|++.+ +.++...|++.|+|++|++||+++++.++..|+.+|++++.+.++
T Consensus 282 ~A~~aL~nLa~~----~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 282 NACGTLWNLSAR----NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHHHHHTSS----CHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHhCC----CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 999999999743 368899999999999999999999988899999999999877665
No 15
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=3.8e-32 Score=296.33 Aligned_cols=397 Identities=17% Similarity=0.182 Sum_probs=308.5
Q ss_pred HcccccCCCHHHHHHHHHHHHHhcc-CCchhHHHHHhc-CCHHHHHHhhccC-CHHHHHHHHHHHHHhcCC-cchHHHHH
Q 006250 154 QIAILHTGSMEEKCDAAASLVSLAR-DNDRYGKLIIEE-GGVPPLLKLAYEG-ELEGQENAARAIGLLGRD-AESVEQIV 229 (654)
Q Consensus 154 lV~lL~s~~~~~k~~Aa~aL~~La~-~~~~~~~~I~e~-G~Ip~LV~LL~s~-~~~~q~~Aa~AL~nLa~~-~e~~~~iv 229 (654)
+++.|+++++..|..|+.+|+++.. ..+...+.+++. |++|.|+++|+++ ++.+|..|+++|.+++.+ ++++..++
T Consensus 25 l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 104 (450)
T 2jdq_A 25 MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVI 104 (450)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 4889999999999999999999853 223334556777 9999999999998 799999999999999986 57788899
Q ss_pred HcCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCc---hhhhhHHHHHhhccchhhh
Q 006250 230 NAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFET---VQEHSKYAIASKQNISSLH 306 (654)
Q Consensus 230 ~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~---~~~~~~~al~~~~~~~~i~ 306 (654)
+.|++|.|+++|+++++++++.|+|+|++|+.+++++++.+.+.|+++.|+.+|.+.. ++....+ .+.
T Consensus 105 ~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~---------~L~ 175 (450)
T 2jdq_A 105 QAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVW---------ALS 175 (450)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHH---------HHH
T ss_pred hCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHH---------HHH
Confidence 9999999999999999999999999999999988899999999999999999998532 1222212 222
Q ss_pred HHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCcc
Q 006250 307 SALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQH 386 (654)
Q Consensus 307 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (654)
+++....+ .... ..+ .+.+|.+
T Consensus 176 ~l~~~~~~------------------------------~~~~-~~~---------------------------~~~l~~L 197 (450)
T 2jdq_A 176 NLCRGKSP------------------------------PPEF-AKV---------------------------SPCLNVL 197 (450)
T ss_dssp HHHCCSSS------------------------------CCCG-GGT---------------------------GGGHHHH
T ss_pred HHhCCCCC------------------------------CCCH-HHH---------------------------HHHHHHH
Confidence 23211100 0000 000 1222333
Q ss_pred chhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHh
Q 006250 387 QDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITA 466 (654)
Q Consensus 387 ~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa 466 (654)
..++. .+|+ .++..|+++|++++.+.++..+.+.+.|+++.|+.+|++++.+++..++++|++|+.
T Consensus 198 ~~~l~----------~~~~----~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 263 (450)
T 2jdq_A 198 SWLLF----------VSDT----DVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVT 263 (450)
T ss_dssp HHHTT----------CCCH----HHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHc----------cCCH----HHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhh
Confidence 33221 2344 467899999999999888888899999999999999999999999999999999975
Q ss_pred hcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchh-----hhhccHHHHHHHhccCCHHH
Q 006250 467 VAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRA-----TETRIIGPLVNLLDEREPEV 541 (654)
Q Consensus 467 ~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~-----~e~~~I~pLV~lL~~~~~~v 541 (654)
+. ++.++..+. .++++.|++++.++++.++..++++|++++..... .+.+++|+|+++|+++++++
T Consensus 264 ~~---~~~~~~~~~------~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v 334 (450)
T 2jdq_A 264 GD---DIQTQVILN------CSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRT 334 (450)
T ss_dssp SC---HHHHHHHHT------TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHH
T ss_pred CC---hHHHHHHHH------CccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHH
Confidence 43 333332111 24788999999998899999999999999974332 23578999999999999999
Q ss_pred HHHHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhccCCcchHHHHHHHHHHHHhCCCch------------HHHH
Q 006250 542 IMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIAIKQPES------------KTLA 609 (654)
Q Consensus 542 ~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~ia~~~~~~------------~~l~ 609 (654)
+++|+|+|++++.++ .+++.+.+++.|++++|++++..+++.++..|+.+|.+++...+.. ..+.
T Consensus 335 ~~~a~~~L~~l~~~~---~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~ 411 (450)
T 2jdq_A 335 RKEAAWAITNATSGG---SAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIE 411 (450)
T ss_dssp HHHHHHHHHHHHHHC---CHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCC---CHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHH
Confidence 999999999998543 3678888999999999999999888888888999999996533321 2333
Q ss_pred hhhhhHHHHhhhhhhhhhcCccHHhHHHHHHHHHHhhhcCC
Q 006250 610 QEEVLIVLEWSFKQAHLVAEPSIEALLPEAKSTLATYQSRD 650 (654)
Q Consensus 610 ~~~~l~~l~~~~~~~~~~q~~~~~~l~~~a~~~l~~y~~~~ 650 (654)
+.|+++.| ..++++...+++..|..+++.||+..
T Consensus 412 ~~g~~~~l-------~~l~~~~~~~v~~~a~~~l~~~~~~~ 445 (450)
T 2jdq_A 412 EAYGLDKI-------EFLQSHENQEIYQKAFDLIEHYFGTE 445 (450)
T ss_dssp HHHCHHHH-------HHHHCHHHHHHHHHHHHHHHHHHCCC
T ss_pred HcCcHHHH-------HHHHcCCCHHHHHHHHHHHHHHCCcc
Confidence 44444444 44577888999999999999999654
No 16
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=2e-33 Score=313.20 Aligned_cols=478 Identities=15% Similarity=0.106 Sum_probs=324.1
Q ss_pred CcccHHHHHHhhhcChhhHH----HHHHhcCCCC-Ccc---ccccCCCCccccchhhhhHHHHcccccCC-CHHHHHHHH
Q 006250 100 PAAAFRKTLMQLENSLGDVS----WLIRVSASSE-END---DEYLGLPPIAANEPILCLIWEQIAILHTG-SMEEKCDAA 170 (654)
Q Consensus 100 ~~~~l~~l~~lL~~~~~dv~----~lL~~s~~~~-~~~---~~~~~lp~la~~~~i~~~v~~lV~lL~s~-~~~~k~~Aa 170 (654)
..|.+|.++.+|.+...+++ ..|.....+. .+. ...+++|++ +..|+++ +++.+..|+
T Consensus 15 ~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~L-------------v~~L~~~~~~~~~~~a~ 81 (529)
T 1jdh_A 15 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAI-------------VRTMQNTNDVETARCTA 81 (529)
T ss_dssp --CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHH-------------HHHHHHCCCHHHHHHHH
T ss_pred hHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHH-------------HHHHhcCCCHHHHHHHH
Confidence 46889999999976554433 2333333221 111 112344554 8888765 899999999
Q ss_pred HHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCC-cchHHHHHHcCchHHHHHhhcCCChhHH
Q 006250 171 ASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRD-AESVEQIVNAGVCSTFAKNLKDGHMKVQ 249 (654)
Q Consensus 171 ~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~-~e~~~~iv~~GaIp~Lv~LL~s~~~~vq 249 (654)
.+|++++.+ ++++..+++.|+||+|+++|+++++.+|..|+++|++|+.+ ++.+..+++.|++|.|+++|++++.+++
T Consensus 82 ~~L~~ls~~-~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~ 160 (529)
T 1jdh_A 82 GTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFL 160 (529)
T ss_dssp HHHHHHTTS-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHH
T ss_pred HHHHHHHcC-chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHH
Confidence 999999976 67999999999999999999999999999999999999987 5678888899999999999999999999
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHHHHhhcCCCCCCCCCCCCCCCC
Q 006250 250 SVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVASNSQNPKDHRTAPPQQQG 329 (654)
Q Consensus 250 ~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 329 (654)
..++.+|.+++.++++++..+.+.|+++.|+.+|++++.. ...++... .+..+.....+ .. .+.
T Consensus 161 ~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~-~~~~~a~~-----~L~~l~~~~~~--~~--------~~~ 224 (529)
T 1jdh_A 161 AITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYE-KLLWTTSR-----VLKVLSVCSSN--KP--------AIV 224 (529)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCH-HHHHHHHH-----HHHHHTTSTTH--HH--------HHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChH-HHHHHHHH-----HHHHHhcCccc--HH--------HHH
Confidence 9999999999998899999999999999999999876432 12221111 11111100000 00 000
Q ss_pred CCC-cccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCccchhhhhcCCCCCCCCCCChhHH
Q 006250 330 NGN-ISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVLGGTSTKGRESEDPTVK 408 (654)
Q Consensus 330 ~~~-~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~dp~~~ 408 (654)
+.. ...+...+.+.+ ..+..-....+. .+......+. . -.+.+|.+..++. .+|+
T Consensus 225 ~~g~~~~L~~ll~~~~-~~~~~~a~~~L~-~l~~~~~~~~--~-------~~~~i~~L~~ll~----------~~~~--- 280 (529)
T 1jdh_A 225 EAGGMQALGLHLTDPS-QRLVQNCLWTLR-NLSDAATKQE--G-------MEGLLGTLVQLLG----------SDDI--- 280 (529)
T ss_dssp HTTHHHHHHTTTTSSC-HHHHHHHHHHHH-HHHTTCTTCS--C-------CHHHHHHHHHHTT----------CSCH---
T ss_pred HCCCHHHHHHHHhCCC-hHHHHHHHHHHH-HHhcCChhhH--H-------HHhHHHHHHHHHc----------CCCH---
Confidence 000 001111222221 111111111110 0100000000 0 0123344443322 2455
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccC--ChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHH
Q 006250 409 AQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKG--PEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAA 486 (654)
Q Consensus 409 ~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~--~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~ 486 (654)
.++..|+++|++|+.+++++++.+.+.|+++.|+.+|.+. +.+++..++++|++|+....++...|+... .
T Consensus 281 -~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~------~ 353 (529)
T 1jdh_A 281 -NVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVR------L 353 (529)
T ss_dssp -HHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHH------H
T ss_pred -HHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHH------H
Confidence 3678999999999999999999999999999999999863 379999999999999754333222333211 1
Q ss_pred HHHHHHHHHHhhhcC-cchhhHHHHHHHHhhhcchhh----hhccHHHHHHHhccCCHHHHHHHHHHHHh--ccccCCC-
Q 006250 487 KAVLEQLLHIVEKAD-SDLLIPSIRAIGNLARTFRAT----ETRIIGPLVNLLDEREPEVIMEATVALNK--FATTENY- 558 (654)
Q Consensus 487 ~~vv~~L~~ll~~~~-~~l~~~~~~alg~la~~~~~~----e~~~I~pLV~lL~~~~~~v~~eAa~AL~~--~a~~~n~- 558 (654)
.++++.|++++.+++ +.++..++++|+|++...... +.++||+|+++|++++++++++|+|+|+| +..+++.
T Consensus 354 ~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~ 433 (529)
T 1jdh_A 354 HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRME 433 (529)
T ss_dssp TTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHH
T ss_pred cCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHH
Confidence 245789999999877 489999999999999754432 45789999999999999999999999988 4332210
Q ss_pred --------------CCHHHHHHHHHCCCHHHHHHhhccCCcchHHHHHHHHHHHHhCCCchHHHHhhhhhHHHHhhhhhh
Q 006250 559 --------------LSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIAIKQPESKTLAQEEVLIVLEWSFKQA 624 (654)
Q Consensus 559 --------------~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~ia~~~~~~~~l~~~~~l~~l~~~~~~~ 624 (654)
.++++...|.+.|++++|+.++.++++.++..|+.+|++++.+.+....+.+.|+++.|+
T Consensus 434 ~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~------ 507 (529)
T 1jdh_A 434 EIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLT------ 507 (529)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHH------
T ss_pred HHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHH------
Confidence 024556778999999999999999988899999999999975544456777888888887
Q ss_pred hhhcCccHHhHHHHHHHHHHh
Q 006250 625 HLVAEPSIEALLPEAKSTLAT 645 (654)
Q Consensus 625 ~~~q~~~~~~l~~~a~~~l~~ 645 (654)
.+ +++..++++..|...|+.
T Consensus 508 ~l-~~~~~~~v~~~a~~aL~~ 527 (529)
T 1jdh_A 508 EL-LHSRNEGVATYAAAVLFR 527 (529)
T ss_dssp HG-GGCSSHHHHHHHHHHHHH
T ss_pred HH-hcCCCHHHHHHHHHHHHh
Confidence 33 556677888888887764
No 17
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=6.5e-33 Score=306.61 Aligned_cols=358 Identities=16% Similarity=0.180 Sum_probs=272.2
Q ss_pred cccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhcc------------CCHHHHHHHHHHHHHhcCC-
Q 006250 155 IAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYE------------GELEGQENAARAIGLLGRD- 221 (654)
Q Consensus 155 V~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s------------~~~~~q~~Aa~AL~nLa~~- 221 (654)
+..|.+.+.. +..+.|..++.+ ++.+..+++.|++|.||++|+. +++++|++|+|||.||+.+
T Consensus 38 ~~~~~~~~~~---~~~~~ll~~~~~-~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~ 113 (458)
T 3nmz_A 38 LSMLGTHDKD---DMSRTLLAMSSS-QDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQ 113 (458)
T ss_dssp -------CCH---HHHHHHHHHHSS-TTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHhcCCCHH---HHHHHHHHHHcC-CcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccC
Confidence 6777777665 377889999865 7788999999999999999996 3479999999999999975
Q ss_pred cchHHHHHHcCch----------HHHHHhhcCCC--hh-----HHH-------HHHHHHHHHhcCChhhHHHHHhCCcHH
Q 006250 222 AESVEQIVNAGVC----------STFAKNLKDGH--MK-----VQS-------VVAWAVSELASNHPKCQDHFAQNNIVR 277 (654)
Q Consensus 222 ~e~~~~iv~~GaI----------p~Lv~LL~s~~--~~-----vq~-------~Aa~aL~nLa~~~~~~r~~i~~~g~I~ 277 (654)
++.+....+.|++ +.+++++.+.. ++ +++ +|+|+|+||+. ++++|+.|.+.|+++
T Consensus 114 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~~~G~l~ 192 (458)
T 3nmz_A 114 PDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQ 192 (458)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHHHTTHHH
T ss_pred cchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHH
Confidence 7888999999999 88888887652 22 544 99999999988 699999999999999
Q ss_pred HHHHhhccCchhhhhHHHHHhhccchhhhHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhh
Q 006250 278 FLVSHLAFETVQEHSKYAIASKQNISSLHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIA 357 (654)
Q Consensus 278 ~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a 357 (654)
+|+.+|..+ +..+ . .
T Consensus 193 ~Lv~LL~~~----~~~~----------------~--~------------------------------------------- 207 (458)
T 3nmz_A 193 AIAELLQVD----CEMY----------------G--L------------------------------------------- 207 (458)
T ss_dssp HHHHHHHHH----HHHS----------------T--T-------------------------------------------
T ss_pred HHHHHHhhh----hccc----------------c--c-------------------------------------------
Confidence 999999642 1100 0 0
Q ss_pred hcccCCCcccccCCcccccccCCCCCCccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHh-h
Q 006250 358 IKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTE-S 436 (654)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e-~ 436 (654)
..++ ....++..|+++|.||+.+++.+...|.+ .
T Consensus 208 --------------------------------------------~~~~-~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~ 242 (458)
T 3nmz_A 208 --------------------------------------------TNDH-YSITLRRYAGMALTNLTFGDVANKATLCSMK 242 (458)
T ss_dssp --------------------------------------------CCCH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHCH
T ss_pred --------------------------------------------ccCC-CCHHHHHHHHHHHHHHhCCCcccHHHHHHcC
Confidence 0000 01247889999999999998877777754 5
Q ss_pred CcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHh-hhcCcchhhHHHHHHHHh
Q 006250 437 RALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIV-EKADSDLLIPSIRAIGNL 515 (654)
Q Consensus 437 gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll-~~~~~~l~~~~~~alg~l 515 (654)
|++|.|+.||+++++++|.+|+|||++|+.+. +.+.+... ...++|+.|+++| .+.+++++.+++.+||||
T Consensus 243 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~--~~~~k~~I------~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nL 314 (458)
T 3nmz_A 243 GCMRALVAQLKSESEDLQQVIASVLRNLSWRA--DVNSKKTL------REVGSVKALMECALEVKKESTLKSVLSALWNL 314 (458)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSC--CHHHHHHH------HHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCC--CHHHHHHH------HHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 67999999999999999999999999998531 23333321 1135788999975 556788999999999999
Q ss_pred hhcc-hh----h-hhccHHHHHHHhccCCH----HHHHHHHHHHHhccc--cCCCCCHHHHHHHHHCCCHHHHHHhhccC
Q 006250 516 ARTF-RA----T-ETRIIGPLVNLLDEREP----EVIMEATVALNKFAT--TENYLSETHSKAIINAGGVKHLIQLVYFG 583 (654)
Q Consensus 516 a~~~-~~----~-e~~~I~pLV~lL~~~~~----~v~~eAa~AL~~~a~--~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~ 583 (654)
+... .+ . ..|+||+|+++|.+... +++++|+|+|.|++. .+ +.++...|+++|++++|++||+++
T Consensus 315 s~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~---~~~~~~~i~~~G~i~~Lv~LL~~~ 391 (458)
T 3nmz_A 315 SAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIAT---NEDHRQILRENNCLQTLLQHLKSH 391 (458)
T ss_dssp HHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHTTHHHHHHHHSSCS
T ss_pred ccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccC---CHHHHHHHHHcccHHHHHHHHcCC
Confidence 9832 22 1 45789999999976654 599999999999974 12 267888999999999999999999
Q ss_pred CcchHHHHHHHHHHHHhC-CCchHHHHhhhhhHHHHhhhhhhhhhc--CccHHhHHHHHHHHHH
Q 006250 584 EQMIQIPALTLLCYIAIK-QPESKTLAQEEVLIVLEWSFKQAHLVA--EPSIEALLPEAKSTLA 644 (654)
Q Consensus 584 ~~~~q~~Al~~L~~ia~~-~~~~~~l~~~~~l~~l~~~~~~~~~~q--~~~~~~l~~~a~~~l~ 644 (654)
+..+|.+|+++|.+++.. ..+...+.++|+++.|.. +++ ++.+.+-...|+..|-
T Consensus 392 ~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~------LL~s~~~~v~~~Aa~AL~nL~ 449 (458)
T 3nmz_A 392 SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKN------LIHSKHKMIAMGSAAALRNLM 449 (458)
T ss_dssp CHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHT------TTTCSSHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHH------HHhCCCHHHHHHHHHHHHHHH
Confidence 888999999999999854 445677999999999983 332 3344444455555443
No 18
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.8e-31 Score=307.57 Aligned_cols=415 Identities=14% Similarity=0.113 Sum_probs=304.3
Q ss_pred cccHHHHHHhhhcC-hhhHH----HHHHhcCCCCC-cc--ccccCCCCccccchhhhhHHHHcccccCCCHHHHHHHHHH
Q 006250 101 AAAFRKTLMQLENS-LGDVS----WLIRVSASSEE-ND--DEYLGLPPIAANEPILCLIWEQIAILHTGSMEEKCDAAAS 172 (654)
Q Consensus 101 ~~~l~~l~~lL~~~-~~dv~----~lL~~s~~~~~-~~--~~~~~lp~la~~~~i~~~v~~lV~lL~s~~~~~k~~Aa~a 172 (654)
.+.++.++..|.+. ..+++ ..|.......+ +. ...+++|++ +.+|+++++.++..|+++
T Consensus 55 ~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~L-------------v~lL~~~~~~v~~~A~~a 121 (644)
T 2z6h_A 55 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPAL-------------VKMLGSPVDSVLFYAITT 121 (644)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHH-------------HHHTTCSSHHHHHHHHHH
T ss_pred cChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHH-------------HHHHhCCCHHHHHHHHHH
Confidence 47899999999754 33322 23333332221 11 234566665 899999999999999999
Q ss_pred HHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcC-CcchHHHHHHcCchHHHHHhhcCCC-hhHHH
Q 006250 173 LVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGR-DAESVEQIVNAGVCSTFAKNLKDGH-MKVQS 250 (654)
Q Consensus 173 L~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~-~~e~~~~iv~~GaIp~Lv~LL~s~~-~~vq~ 250 (654)
|.+++..++..+..+++.|+||+|+++|+++++..+..++.+|++|+. +++++..+++.|++|.|+++|++++ ..++.
T Consensus 122 L~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~ 201 (644)
T 2z6h_A 122 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLW 201 (644)
T ss_dssp HHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHH
T ss_pred HHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHH
Confidence 999998767788999999999999999999999888888999999996 5789999999999999999998865 67888
Q ss_pred HHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCch--hhhhHHHHHhhccchhhhHHHHhhcCCCCCCCCCCCCCCC
Q 006250 251 VVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETV--QEHSKYAIASKQNISSLHSALVASNSQNPKDHRTAPPQQQ 328 (654)
Q Consensus 251 ~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~--~~~~~~al~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~ 328 (654)
.++.+|.||+. ++++++.+++.|+++.|+.+|.++.. .....+ .+..++.....
T Consensus 202 ~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~---------~L~nL~~~~~~-------------- 257 (644)
T 2z6h_A 202 TTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLW---------TLRNLSDAATK-------------- 257 (644)
T ss_dssp HHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHH---------HHHHHGGGCTT--------------
T ss_pred HHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH---------HHHHHhhcchh--------------
Confidence 99999999998 78999999999999999999987631 111111 22323211000
Q ss_pred CCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCccchhhhhcCCCCCCCCCCChhHH
Q 006250 329 GNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVLGGTSTKGRESEDPTVK 408 (654)
Q Consensus 329 ~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~dp~~~ 408 (654)
...+. +.+|.++.++. .+|+
T Consensus 258 ----------------~~~~~-------------------------------~~i~~Lv~lL~----------~~d~--- 277 (644)
T 2z6h_A 258 ----------------QEGME-------------------------------GLLGTLVQLLG----------SDDI--- 277 (644)
T ss_dssp ----------------CCSCH-------------------------------HHHHHHHHHTT----------CSCH---
T ss_pred ----------------hhhhh-------------------------------hHHHHHHHHHc----------CCCH---
Confidence 00001 11222332221 2344
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCC--hhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHH
Q 006250 409 AQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGP--EDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAA 486 (654)
Q Consensus 409 ~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~--~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~ 486 (654)
.++..|+++|++|+.+++++++.+.+.|+++.|+.+|.+.. ++++..|+++|.+|+.....+...+.... .
T Consensus 278 -~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~------~ 350 (644)
T 2z6h_A 278 -NVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVR------L 350 (644)
T ss_dssp -HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHH------H
T ss_pred -HHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHH------H
Confidence 46789999999999999999999999999999999998743 79999999999999753222212222111 1
Q ss_pred HHHHHHHHHHhhhcC-cchhhHHHHHHHHhhhcchh----hhhccHHHHHHHhccCCHHHHHHHHHHHHh--ccccCCC-
Q 006250 487 KAVLEQLLHIVEKAD-SDLLIPSIRAIGNLARTFRA----TETRIIGPLVNLLDEREPEVIMEATVALNK--FATTENY- 558 (654)
Q Consensus 487 ~~vv~~L~~ll~~~~-~~l~~~~~~alg~la~~~~~----~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~--~a~~~n~- 558 (654)
.++++.|++++.+.+ +.++..++++|+||+..... .+.++||+|+++|.+.+++++++|+|+++| ++.+++.
T Consensus 351 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~ 430 (644)
T 2z6h_A 351 HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRME 430 (644)
T ss_dssp TTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHH
T ss_pred ccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHH
Confidence 246789999999876 58999999999999975443 245789999999998888888877777776 4332210
Q ss_pred --------------CCHHHHHHHHHCCCHHHHHHhhccCCcchHHHHHHHHHHHHhCCCchHHHHhhhhhHHHHh
Q 006250 559 --------------LSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIAIKQPESKTLAQEEVLIVLEW 619 (654)
Q Consensus 559 --------------~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~ia~~~~~~~~l~~~~~l~~l~~ 619 (654)
.+.++...+.+.|++++|+++|.++++.+|..|+.+|++++.+.+....+.+.|+++.|..
T Consensus 431 ~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ 505 (644)
T 2z6h_A 431 EIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTE 505 (644)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHH
Confidence 0123446788999999999999998888899999999999866455677888899998873
No 19
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.98 E-value=2.7e-31 Score=312.94 Aligned_cols=460 Identities=14% Similarity=0.086 Sum_probs=309.5
Q ss_pred CcccHHHHHHhhhcChhhHH----HHHHhcCCCC-Cccc---cccCCCCccccchhhhhHHHHcccccCC-CHHHHHHHH
Q 006250 100 PAAAFRKTLMQLENSLGDVS----WLIRVSASSE-ENDD---EYLGLPPIAANEPILCLIWEQIAILHTG-SMEEKCDAA 170 (654)
Q Consensus 100 ~~~~l~~l~~lL~~~~~dv~----~lL~~s~~~~-~~~~---~~~~lp~la~~~~i~~~v~~lV~lL~s~-~~~~k~~Aa 170 (654)
..+.+|.|+.+|.+....++ ..|..+.... .+.. ..+.+|+ ++..|+++ +++.|..|+
T Consensus 148 ~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~-------------Lv~~L~~~~d~~vr~~Aa 214 (780)
T 2z6g_A 148 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSA-------------IVRTMQNTNDVETARCTS 214 (780)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHH-------------HHHHHHHCCCHHHHHHHH
T ss_pred HhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHH-------------HHHHHcCCCCHHHHHHHH
Confidence 47899999999986554433 2233222211 1110 1122333 48888765 899999999
Q ss_pred HHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCC-cchHHHHHHcCchHHHHHhhcCCChhHH
Q 006250 171 ASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRD-AESVEQIVNAGVCSTFAKNLKDGHMKVQ 249 (654)
Q Consensus 171 ~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~-~e~~~~iv~~GaIp~Lv~LL~s~~~~vq 249 (654)
.+|++|+.+ +.++..|.+.|+||+|+++|+++++.+|+.|+++|.||+.+ ++.+..+++.|+||.|+++|++++.+++
T Consensus 215 ~aL~~Ls~~-~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~ 293 (780)
T 2z6g_A 215 GTLHNLSHH-REGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFL 293 (780)
T ss_dssp HHHHHHHTS-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHH
T ss_pred HHHHHHhCC-chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHH
Confidence 999999976 77899999999999999999999999999999999999987 5678888899999999999999999999
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHHHHhhcCCCCCCCCCCCCCCCC
Q 006250 250 SVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVASNSQNPKDHRTAPPQQQG 329 (654)
Q Consensus 250 ~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 329 (654)
..++.+|.+++..+++.+..+.+.|+++.|+.+|++++.......+.. .+..++....+........++
T Consensus 294 ~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~------aL~~Ls~~~~~~~~i~~~g~l----- 362 (780)
T 2z6g_A 294 AITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSR------VLKVLSVCSSNKPAIVEAGGM----- 362 (780)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHH------HHHHHHTSTTHHHHHHHTTHH-----
T ss_pred HHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHH------HHHHhhcChHHHHHHHHhchH-----
Confidence 999999999998789999999999999999999997643211111000 111111000000000000000
Q ss_pred CCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCccchhhhhcCCCCCCCCCCChhHHH
Q 006250 330 NGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVLGGTSTKGRESEDPTVKA 409 (654)
Q Consensus 330 ~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~dp~~~~ 409 (654)
..+...+.+++. .+..-....+. .+......+ .. ..+.+|.++.++. .+|+
T Consensus 363 ----~~Ll~lL~~~~~-~~~~~a~~~L~-~L~~~~~~~--~~-------~~~~i~~Lv~lL~----------~~d~---- 413 (780)
T 2z6g_A 363 ----QALGLHLTDPSQ-RLVQNCLWTLR-NLSDAATKQ--EG-------MEGLLGTLVQLLG----------SDDI---- 413 (780)
T ss_dssp ----HHHGGGTTCSCH-HHHHHHHHHHH-HHHTTCTTC--SC-------CHHHHHHHHHHTT----------CSCH----
T ss_pred ----HHHHHHHcCCch-HHHHHHHHHHH-HHhccchhh--hh-------hhhHHHHHHHHHc----------CCCH----
Confidence 011111222211 11111111110 000000000 00 0122333333221 2455
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccC-C-hhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHH
Q 006250 410 QMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKG-P-EDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAK 487 (654)
Q Consensus 410 ~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~-~-~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~ 487 (654)
.++..|+++|++|+.++.++++.+.+.|+++.|+.+|.+. + ++++..|+++|++|+....+....+.... ..
T Consensus 414 ~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~------~~ 487 (780)
T 2z6g_A 414 NVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVR------LH 487 (780)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHH------HT
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHH------Hc
Confidence 3678999999999999999999999999999999999873 3 49999999999999753322111222111 12
Q ss_pred HHHHHHHHHhhhcCc-chhhHHHHHHHHhhhcchhh----hhccHHHHHHHhccCCHHHHHHHHHHHHh--ccccCCC--
Q 006250 488 AVLEQLLHIVEKADS-DLLIPSIRAIGNLARTFRAT----ETRIIGPLVNLLDEREPEVIMEATVALNK--FATTENY-- 558 (654)
Q Consensus 488 ~vv~~L~~ll~~~~~-~l~~~~~~alg~la~~~~~~----e~~~I~pLV~lL~~~~~~v~~eAa~AL~~--~a~~~n~-- 558 (654)
++++.|++++.+.++ .++..++++|+||+...... +.++||+|+++|.+.+++++++|+|+++| +..+.+.
T Consensus 488 ~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~ 567 (780)
T 2z6g_A 488 YGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEE 567 (780)
T ss_dssp TCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHH
T ss_pred CCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHH
Confidence 357889999998875 89999999999999754443 45789999999988777777766666655 3322210
Q ss_pred -------------CCHHHHHHHHHCCCHHHHHHhhccCCcchHHHHHHHHHHHHhCCCchHHHHhhhhhHHHHh
Q 006250 559 -------------LSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIAIKQPESKTLAQEEVLIVLEW 619 (654)
Q Consensus 559 -------------~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~ia~~~~~~~~l~~~~~l~~l~~ 619 (654)
.++++...|.+.|++++|++||+++++.++..|+.+|++++.+....+.|.+.|+++.|..
T Consensus 568 v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~ 641 (780)
T 2z6g_A 568 IVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTE 641 (780)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHH
Confidence 0245556788999999999999999888999999999999866555677888999999874
No 20
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.98 E-value=1.9e-30 Score=291.08 Aligned_cols=359 Identities=18% Similarity=0.228 Sum_probs=296.5
Q ss_pred cccCcccHHHHHHhhhcCh-hh----HHHHHHhcCCCCCcc----ccccCCCCccccchhhhhHHHHcccccCCCHHHHH
Q 006250 97 TIIPAAAFRKTLMQLENSL-GD----VSWLIRVSASSEEND----DEYLGLPPIAANEPILCLIWEQIAILHTGSMEEKC 167 (654)
Q Consensus 97 ~i~~~~~l~~l~~lL~~~~-~d----v~~lL~~s~~~~~~~----~~~~~lp~la~~~~i~~~v~~lV~lL~s~~~~~k~ 167 (654)
.++..|.+|.|+.+|.+.. .+ ..|.|.++..+.... ...+++|++ +.+|+++++.++.
T Consensus 112 ~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L-------------~~lL~~~~~~v~~ 178 (528)
T 4b8j_A 112 EVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIF-------------VKLLGSSSDDVRE 178 (528)
T ss_dssp HHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHH-------------HHHTTCSCHHHHH
T ss_pred HHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHH-------------HHHhcCCCHHHHH
Confidence 4557899999999997654 33 346777666543211 235667776 8999999999999
Q ss_pred HHHHHHHHhccCCchhHHHHHhcCCHHHHHHhh-ccCCHHHHHHHHHHHHHhcCCcchHHHHHHcCchHHHHHhhcCCCh
Q 006250 168 DAAASLVSLARDNDRYGKLIIEEGGVPPLLKLA-YEGELEGQENAARAIGLLGRDAESVEQIVNAGVCSTFAKNLKDGHM 246 (654)
Q Consensus 168 ~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL-~s~~~~~q~~Aa~AL~nLa~~~e~~~~iv~~GaIp~Lv~LL~s~~~ 246 (654)
.|+++|++++.+++.++..+.+.|++|+|+.+| .+.++.++..|+|+|++|+.+..........|++|.|+++|.++++
T Consensus 179 ~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~ 258 (528)
T 4b8j_A 179 QAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDE 258 (528)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCH
T ss_pred HHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCH
Confidence 999999999988888999999999999999999 5667999999999999999885555556679999999999999999
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHHHHhhcCCCCCCCCCCCCC
Q 006250 247 KVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVASNSQNPKDHRTAPPQ 326 (654)
Q Consensus 247 ~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~ 326 (654)
+++..++|+|++|+.+.++..+.+.+.|+++.|+.+|.+++
T Consensus 259 ~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~--------------------------------------- 299 (528)
T 4b8j_A 259 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPS--------------------------------------- 299 (528)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSC---------------------------------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCC---------------------------------------
Confidence 99999999999999977777788999999999999996431
Q ss_pred CCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCccchhhhhcCCCCCCCCCCChh
Q 006250 327 QQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVLGGTSTKGRESEDPT 406 (654)
Q Consensus 327 ~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~dp~ 406 (654)
+
T Consensus 300 ------------------------------------------------------------------------------~- 300 (528)
T 4b8j_A 300 ------------------------------------------------------------------------------P- 300 (528)
T ss_dssp ------------------------------------------------------------------------------H-
T ss_pred ------------------------------------------------------------------------------h-
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccC-ChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchH
Q 006250 407 VKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKG-PEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTA 485 (654)
Q Consensus 407 ~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~-~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~ 485 (654)
.++..|+++|++|+.|++.+++.+.+.|+++.|+.+|+++ +..++++|+|+|++|+.+ +++..+..+
T Consensus 301 ---~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~---~~~~~~~~~------ 368 (528)
T 4b8j_A 301 ---SVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG---NKDQIQAVI------ 368 (528)
T ss_dssp ---HHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS---CHHHHHHHH------
T ss_pred ---hHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC---CHHHHHHHH------
Confidence 2456799999999999999999999999999999999999 999999999999999864 333332211
Q ss_pred HHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcc-hh-----hhhccHHHHHHHhccCCHHHHHHHHHHHHhccccCCC-
Q 006250 486 AKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTF-RA-----TETRIIGPLVNLLDEREPEVIMEATVALNKFATTENY- 558 (654)
Q Consensus 486 ~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~-~~-----~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a~~~n~- 558 (654)
..++++.|+.++.+++++++..++++|++++... .. .+.++|++|+++|.+.+.+++..|.++|.++...+..
T Consensus 369 ~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~ 448 (528)
T 4b8j_A 369 NAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETD 448 (528)
T ss_dssp HTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 1246789999999999999999999999999762 11 2457999999999999999999999999999632210
Q ss_pred ------CCHHHHHHHHHCCCHHHHHHhhccCCcchHHHHHHHHHHH
Q 006250 559 ------LSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYI 598 (654)
Q Consensus 559 ------~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~i 598 (654)
.....+..|.+.||++.|..|.++.++.++..|...|..+
T Consensus 449 ~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~ 494 (528)
T 4b8j_A 449 KTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAY 494 (528)
T ss_dssp HHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred hhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 0113577889999999999999888887888888888877
No 21
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.97 E-value=1.4e-30 Score=290.17 Aligned_cols=328 Identities=15% Similarity=0.153 Sum_probs=280.6
Q ss_pred cccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhc-CCHHHHHHhhccC-CHHHHHHHHHHHHHhcCCcchHHHHHHcC
Q 006250 155 IAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEE-GGVPPLLKLAYEG-ELEGQENAARAIGLLGRDAESVEQIVNAG 232 (654)
Q Consensus 155 V~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~-G~Ip~LV~LL~s~-~~~~q~~Aa~AL~nLa~~~e~~~~iv~~G 232 (654)
+.+|+++++.+|..|+.+|.+++.+ +.++..+++. |++++|+++|+++ +++++..|+++|.+|+.+++++..+++.|
T Consensus 23 v~lL~~~~~~v~~~A~~~L~~l~~~-~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g 101 (529)
T 1jdh_A 23 TKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSG 101 (529)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHHHTS-HHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTT
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHcC-CccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHHcC
Confidence 8999999999999999999999976 6677777754 9999999999876 79999999999999999989999999999
Q ss_pred chHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHHHHhh
Q 006250 233 VCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVAS 312 (654)
Q Consensus 233 aIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~~~~ 312 (654)
++|.|+++|+++++.++..|+++|.+|+.++++.+..+.+.|++|.|+.+|++++
T Consensus 102 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~------------------------- 156 (529)
T 1jdh_A 102 GIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN------------------------- 156 (529)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCC-------------------------
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCC-------------------------
Confidence 9999999999999999999999999999977788999999999999999996531
Q ss_pred cCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCccchhhhh
Q 006250 313 NSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVL 392 (654)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 392 (654)
T Consensus 157 -------------------------------------------------------------------------------- 156 (529)
T 1jdh_A 157 -------------------------------------------------------------------------------- 156 (529)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCCh-hHHHHHHHHHHHHHhhcccC
Q 006250 393 GGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPE-DVKHFSAMALMEITAVAEKN 471 (654)
Q Consensus 393 ~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~-~v~~~aa~AL~~Iaa~ae~~ 471 (654)
.+++..++.+|++++.+++++++.+.+.|+++.|+.+|++++. .++..++.+|++++..
T Consensus 157 ----------------~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~---- 216 (529)
T 1jdh_A 157 ----------------VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC---- 216 (529)
T ss_dssp ----------------HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS----
T ss_pred ----------------HHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC----
Confidence 0134568889999999999999999999999999999998865 5666788999999743
Q ss_pred hHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhh--hhccHHHHHHHhccCCHHHHHHHHHHH
Q 006250 472 SDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRAT--ETRIIGPLVNLLDEREPEVIMEATVAL 549 (654)
Q Consensus 472 ~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~--e~~~I~pLV~lL~~~~~~v~~eAa~AL 549 (654)
++.+... ...++++.|++++.+.+++++..++++|+++++..... ..++||+|+++|.+.+++++..|+|+|
T Consensus 217 ~~~~~~~------~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L 290 (529)
T 1jdh_A 217 SSNKPAI------VEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGIL 290 (529)
T ss_dssp TTHHHHH------HHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred cccHHHH------HHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3333321 11357889999999888999999999999999865432 236899999999999999999999999
Q ss_pred HhccccCCCCCHHHHHHHHHCCCHHHHHHhhccC-C-cchHHHHHHHHHHHHhCCCc----hHHHHhhhhhHHHH
Q 006250 550 NKFATTENYLSETHSKAIINAGGVKHLIQLVYFG-E-QMIQIPALTLLCYIAIKQPE----SKTLAQEEVLIVLE 618 (654)
Q Consensus 550 ~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~-~-~~~q~~Al~~L~~ia~~~~~----~~~l~~~~~l~~l~ 618 (654)
++++.. ..++...+.+.||+++|+++|... + +.++..|+.+|++++.+.++ +..+.+.|+++.|.
T Consensus 291 ~~L~~~----~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~ 361 (529)
T 1jdh_A 291 SNLTCN----NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVV 361 (529)
T ss_dssp HHHTTT----CHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHH
T ss_pred HHHhcC----CHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHH
Confidence 999753 257889999999999999999863 3 45888999999999876555 34677889999987
No 22
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.97 E-value=7.7e-30 Score=286.63 Aligned_cols=359 Identities=19% Similarity=0.214 Sum_probs=298.0
Q ss_pred ccCcccHHHHHHhhhcC-hhh----HHHHHHhcCCCCCc--c--ccccCCCCccccchhhhhHHHHcccccCCCHHHHHH
Q 006250 98 IIPAAAFRKTLMQLENS-LGD----VSWLIRVSASSEEN--D--DEYLGLPPIAANEPILCLIWEQIAILHTGSMEEKCD 168 (654)
Q Consensus 98 i~~~~~l~~l~~lL~~~-~~d----v~~lL~~s~~~~~~--~--~~~~~lp~la~~~~i~~~v~~lV~lL~s~~~~~k~~ 168 (654)
++..|.+|.|+.+|.+. ..+ ..|.|.+...+... . ...+++|++ +.+|++++++++..
T Consensus 126 ~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L-------------v~lL~~~~~~vr~~ 192 (530)
T 1wa5_B 126 VIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLF-------------IQLLYTGSVEVKEQ 192 (530)
T ss_dssp HHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHH-------------HHHHHHCCHHHHHH
T ss_pred HHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHH-------------HHHHcCCCHHHHHH
Confidence 45678999999999765 433 44677766654321 1 135667776 89999999999999
Q ss_pred HHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCc-chHHHHHHcCchHHHHHhhcCCChh
Q 006250 169 AAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDA-ESVEQIVNAGVCSTFAKNLKDGHMK 247 (654)
Q Consensus 169 Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~-e~~~~iv~~GaIp~Lv~LL~s~~~~ 247 (654)
|+++|++++.+++.++..+++.|++|+|+.+|.+.+..++..|+|+|++|+.+. .........|++|.|+++|.++++.
T Consensus 193 A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~ 272 (530)
T 1wa5_B 193 AIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTE 272 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHH
T ss_pred HHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHH
Confidence 999999999887889999999999999999999988999999999999999875 5556677799999999999999999
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHHHHhhcCCCCCCCCCCCCCC
Q 006250 248 VQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVASNSQNPKDHRTAPPQQ 327 (654)
Q Consensus 248 vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~ 327 (654)
++..++|+|++|+.+.++..+.+.+.|+++.|+.+|.++.
T Consensus 273 v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~---------------------------------------- 312 (530)
T 1wa5_B 273 TLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES---------------------------------------- 312 (530)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSC----------------------------------------
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCC----------------------------------------
Confidence 9999999999999877888889999999999999996421
Q ss_pred CCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCccchhhhhcCCCCCCCCCCChhH
Q 006250 328 QGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVLGGTSTKGRESEDPTV 407 (654)
Q Consensus 328 ~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~dp~~ 407 (654)
+
T Consensus 313 -----------------------------------------------------------------------------~-- 313 (530)
T 1wa5_B 313 -----------------------------------------------------------------------------T-- 313 (530)
T ss_dssp -----------------------------------------------------------------------------H--
T ss_pred -----------------------------------------------------------------------------h--
Confidence 0
Q ss_pred HHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHH
Q 006250 408 KAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAK 487 (654)
Q Consensus 408 ~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~ 487 (654)
.++..|+++|++|+.|++...+.+.+.|+++.|+.+|++++..+++.|+|+|++|+.+. ++..+..+ ..
T Consensus 314 --~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~---~~~~~~~~------~~ 382 (530)
T 1wa5_B 314 --LVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGN---TEQIQAVI------DA 382 (530)
T ss_dssp --HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC---HHHHHHHH------HT
T ss_pred --hhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC---HHHHHHHH------HC
Confidence 24567899999999999999999999999999999999999999999999999998643 33333211 12
Q ss_pred HHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchh--------hhhccHHHHHHHhccCCHHHHHHHHHHHHhccccCCC-
Q 006250 488 AVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRA--------TETRIIGPLVNLLDEREPEVIMEATVALNKFATTENY- 558 (654)
Q Consensus 488 ~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~--------~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a~~~n~- 558 (654)
++++.|+.++.+++++++..++++|++++..... .+.++|++|+.+|.+.+++++..|+++|.++...+..
T Consensus 383 ~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~ 462 (530)
T 1wa5_B 383 NLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEAD 462 (530)
T ss_dssp TCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 4678899999998999999999999999875421 2457999999999999999999999999999742210
Q ss_pred ------CCHHHHHHHHHCCCHHHHHHhhccCCcchHHHHHHHHHHHH
Q 006250 559 ------LSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIA 599 (654)
Q Consensus 559 ------~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~ia 599 (654)
.....+..|.+.||++.|..|+.++++.++..|..+|.++-
T Consensus 463 ~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~ 509 (530)
T 1wa5_B 463 KEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 509 (530)
T ss_dssp HHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHS
T ss_pred hhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 01235678899999999999999888888888999998873
No 23
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.97 E-value=1.8e-29 Score=275.17 Aligned_cols=358 Identities=19% Similarity=0.179 Sum_probs=288.9
Q ss_pred ccCc-ccHHHHHHhhhcC-hhhH----HHHHHhcCCCCCcc----ccccCCCCccccchhhhhHHHHcccccCCCHHHHH
Q 006250 98 IIPA-AAFRKTLMQLENS-LGDV----SWLIRVSASSEEND----DEYLGLPPIAANEPILCLIWEQIAILHTGSMEEKC 167 (654)
Q Consensus 98 i~~~-~~l~~l~~lL~~~-~~dv----~~lL~~s~~~~~~~----~~~~~lp~la~~~~i~~~v~~lV~lL~s~~~~~k~ 167 (654)
++.. +.+|.++..|.+. ..++ .|.+.......... ...+++|.+ +.+|+++++.+|.
T Consensus 59 ~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L-------------~~lL~~~~~~vr~ 125 (450)
T 2jdq_A 59 VISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIF-------------IELLSSEFEDVQE 125 (450)
T ss_dssp HHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHH-------------HHHTTCSCHHHHH
T ss_pred HHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHH-------------HHHHcCCCHHHHH
Confidence 3455 8899999999766 4443 35666554322110 123455555 8999999999999
Q ss_pred HHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhcc-CCHHHHHHHHHHHHHhcCCc--chHHHHHHcCchHHHHHhhcCC
Q 006250 168 DAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYE-GELEGQENAARAIGLLGRDA--ESVEQIVNAGVCSTFAKNLKDG 244 (654)
Q Consensus 168 ~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s-~~~~~q~~Aa~AL~nLa~~~--e~~~~iv~~GaIp~Lv~LL~s~ 244 (654)
.|+++|++++.+++.++..+++.|++|+|+.+|++ .+..+++.|+|+|++|+.+. ..+..++ .|++|.|+++|+++
T Consensus 126 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~ 204 (450)
T 2jdq_A 126 QAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVS 204 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCC
T ss_pred HHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccC
Confidence 99999999998878899999999999999999996 67999999999999999763 3333333 89999999999999
Q ss_pred ChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHHHHhhcCCCCCCCCCCC
Q 006250 245 HMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVASNSQNPKDHRTAP 324 (654)
Q Consensus 245 ~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~~~~~~~~~~~~~~~~ 324 (654)
++.++..++|+|.+|+.+.++.+..+.+.|+++.|+.+|.+++
T Consensus 205 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~------------------------------------- 247 (450)
T 2jdq_A 205 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHND------------------------------------- 247 (450)
T ss_dssp CHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSC-------------------------------------
T ss_pred CHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCc-------------------------------------
Confidence 9999999999999999977788888999999999999986321
Q ss_pred CCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCccchhhhhcCCCCCCCCCCC
Q 006250 325 PQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVLGGTSTKGRESED 404 (654)
Q Consensus 325 ~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~d 404 (654)
T Consensus 248 -------------------------------------------------------------------------------- 247 (450)
T 2jdq_A 248 -------------------------------------------------------------------------------- 247 (450)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCch
Q 006250 405 PTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTST 484 (654)
Q Consensus 405 p~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~ 484 (654)
+ .++..|+++|++++.+++..++.+.+.|+++.|+.+|++++..+++.|+|+|++|+.+. ++..+..+
T Consensus 248 ~----~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~---~~~~~~~~----- 315 (450)
T 2jdq_A 248 Y----KVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGN---RAQIQTVI----- 315 (450)
T ss_dssp H----HHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSC---HHHHHHHH-----
T ss_pred h----hHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC---HHHHHHHH-----
Confidence 1 24567999999999999999999999999999999999999999999999999998643 23332111
Q ss_pred HHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcch-h-----hhhccHHHHHHHhccCCHHHHHHHHHHHHhccccCCC
Q 006250 485 AAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFR-A-----TETRIIGPLVNLLDEREPEVIMEATVALNKFATTENY 558 (654)
Q Consensus 485 ~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~-~-----~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a~~~n~ 558 (654)
..++++.|+.++.+++++++..++++|++++..+. . .+.+++|+|+++|++.+.+++..|+++|.+++..+..
T Consensus 316 -~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~ 394 (450)
T 2jdq_A 316 -DANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQ 394 (450)
T ss_dssp -HTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred -HCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchh
Confidence 12578899999999999999999999999997532 1 2457999999999999999999999999999743210
Q ss_pred -------CCHHHHHHHHHCCCHHHHHHhhccCCcchHHHHHHHHHHHH
Q 006250 559 -------LSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIA 599 (654)
Q Consensus 559 -------~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~ia 599 (654)
.....+..|.+.||++.|..|+++++..++..|+.+|.++-
T Consensus 395 ~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 395 EAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp HHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 00134678889999999999998877778888999998773
No 24
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.97 E-value=2.5e-29 Score=289.62 Aligned_cols=328 Identities=15% Similarity=0.163 Sum_probs=280.9
Q ss_pred cccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhc-CCHHHHHHhhccC-CHHHHHHHHHHHHHhcCCcchHHHHHHcC
Q 006250 155 IAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEE-GGVPPLLKLAYEG-ELEGQENAARAIGLLGRDAESVEQIVNAG 232 (654)
Q Consensus 155 V~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~-G~Ip~LV~LL~s~-~~~~q~~Aa~AL~nLa~~~e~~~~iv~~G 232 (654)
+.+|+++++.+|..|+.+|.+++.+ +.++..+++. |++++|+++|+++ +++++..|+.+|.+|+.+++++..+.+.|
T Consensus 20 v~lL~~~~~~vr~~A~~~L~~La~~-~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g 98 (644)
T 2z6h_A 20 TKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSG 98 (644)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHHHTS-TTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTT
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHCC-ChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcC
Confidence 8999999999999999999999977 5578777765 8999999999976 79999999999999999988999999999
Q ss_pred chHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHHHHhh
Q 006250 233 VCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVAS 312 (654)
Q Consensus 233 aIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~~~~ 312 (654)
+||.|+++|+++++.++..|+++|.||+.+++..+..+.+.|+++.|+.+|++++.
T Consensus 99 ~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~------------------------ 154 (644)
T 2z6h_A 99 GIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV------------------------ 154 (644)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCH------------------------
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCH------------------------
Confidence 99999999999999999999999999999777889999999999999999975310
Q ss_pred cCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCccchhhhh
Q 006250 313 NSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVL 392 (654)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 392 (654)
T Consensus 155 -------------------------------------------------------------------------------- 154 (644)
T 2z6h_A 155 -------------------------------------------------------------------------------- 154 (644)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCC-hhHHHHHHHHHHHHHhhcccC
Q 006250 393 GGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGP-EDVKHFSAMALMEITAVAEKN 471 (654)
Q Consensus 393 ~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~-~~v~~~aa~AL~~Iaa~ae~~ 471 (654)
+++..++.+|++|+.++++++..+.+.|+++.|+.+|++++ +.++..++.+|++++...
T Consensus 155 -----------------~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~--- 214 (644)
T 2z6h_A 155 -----------------KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS--- 214 (644)
T ss_dssp -----------------HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCT---
T ss_pred -----------------HHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCc---
Confidence 13456888999999999999999999999999999999876 578889999999998433
Q ss_pred hHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhh--hhccHHHHHHHhccCCHHHHHHHHHHH
Q 006250 472 SDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRAT--ETRIIGPLVNLLDEREPEVIMEATVAL 549 (654)
Q Consensus 472 ~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~--e~~~I~pLV~lL~~~~~~v~~eAa~AL 549 (654)
+.++... ..++++.|++++.+.++.++..++++|++|++..... ..++||.|+++|++.+.+++..|+|+|
T Consensus 215 -~~~~~l~------~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL 287 (644)
T 2z6h_A 215 -SNKPAIV------EAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGIL 287 (644)
T ss_dssp -THHHHHH------HTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred -ccHHHHH------HCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3343211 1347889999999988999999999999999865432 236899999999999999999999999
Q ss_pred HhccccCCCCCHHHHHHHHHCCCHHHHHHhhccC-C-cchHHHHHHHHHHHHhCCCch----HHHHhhhhhHHHH
Q 006250 550 NKFATTENYLSETHSKAIINAGGVKHLIQLVYFG-E-QMIQIPALTLLCYIAIKQPES----KTLAQEEVLIVLE 618 (654)
Q Consensus 550 ~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~-~-~~~q~~Al~~L~~ia~~~~~~----~~l~~~~~l~~l~ 618 (654)
++++..+ .++...+++.||++.|+++|... + +.++..|+.+|.+++.+.++. ..+...++++.|.
T Consensus 288 ~~L~~~~----~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~ 358 (644)
T 2z6h_A 288 SNLTCNN----YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVV 358 (644)
T ss_dssp HHHHTTC----HHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHH
T ss_pred HHHHcCC----HHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHH
Confidence 9997543 57888999999999999999863 3 468889999999997665542 3366788899887
No 25
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=5.1e-30 Score=275.09 Aligned_cols=261 Identities=16% Similarity=0.158 Sum_probs=214.7
Q ss_pred HHHHHhcCCCCC-cc--ccccCCCCccccchhhhhHHHHcccccC-----------CCHHHHHHHHHHHHHhccCCchhH
Q 006250 119 SWLIRVSASSEE-ND--DEYLGLPPIAANEPILCLIWEQIAILHT-----------GSMEEKCDAAASLVSLARDNDRYG 184 (654)
Q Consensus 119 ~~lL~~s~~~~~-~~--~~~~~lp~la~~~~i~~~v~~lV~lL~s-----------~~~~~k~~Aa~aL~~La~~~~~~~ 184 (654)
.|.|.+.+.+.+ +. .+.|++|++ +.+|.+ .++..|..|+++|.+|+..++.++
T Consensus 53 ~~aL~nls~d~e~R~~i~~~G~l~~L-------------v~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k 119 (354)
T 3nmw_A 53 VCVLMKLSFDEEHRHAMNELGGLQAI-------------AELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANK 119 (354)
T ss_dssp HHHHHHHHTSHHHHHHHHHTTHHHHH-------------HHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCHHHH-------------HHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 355555554432 22 357888887 777742 347789999999999998877788
Q ss_pred HHHHhc-CCHHHHHHhhccCCHHHHHHHHHHHHHhcCC--cchHHHHHHcCchHHHHHhh-cCCChhHHHHHHHHHHHHh
Q 006250 185 KLIIEE-GGVPPLLKLAYEGELEGQENAARAIGLLGRD--AESVEQIVNAGVCSTFAKNL-KDGHMKVQSVVAWAVSELA 260 (654)
Q Consensus 185 ~~I~e~-G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~--~e~~~~iv~~GaIp~Lv~LL-~s~~~~vq~~Aa~aL~nLa 260 (654)
..|... |+||+||++|+++++++|+.|+|+|+||+.+ ++++..|++.|+||+|+++| ++++.++++.|+++|+||+
T Consensus 120 ~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs 199 (354)
T 3nmw_A 120 ATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLS 199 (354)
T ss_dssp HHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 888665 5599999999999999999999999999975 57899999999999999975 6788999999999999999
Q ss_pred cCChhhHHHHH-hCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCC
Q 006250 261 SNHPKCQDHFA-QNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCP 339 (654)
Q Consensus 261 ~~~~~~r~~i~-~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 339 (654)
.++++++..|. ..|+||+|+.+|++++..
T Consensus 200 ~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~-------------------------------------------------- 229 (354)
T 3nmw_A 200 AHCTENKADICAVDGALAFLVGTLTYRSQT-------------------------------------------------- 229 (354)
T ss_dssp TTCHHHHHHHHHSTTHHHHHHHHTTCCCSS--------------------------------------------------
T ss_pred ccChhhhHHHHHhcCcHHHHHHHhccCCCc--------------------------------------------------
Confidence 97778888888 799999999999754200
Q ss_pred CCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHH
Q 006250 340 MPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARAL 419 (654)
Q Consensus 340 ~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL 419 (654)
.+ ..++..|+++|
T Consensus 230 ---------------------------------------------------------------~~----~~v~~~A~~aL 242 (354)
T 3nmw_A 230 ---------------------------------------------------------------NT----LAIIESGGGIL 242 (354)
T ss_dssp ---------------------------------------------------------------SC----CHHHHHHHHHH
T ss_pred ---------------------------------------------------------------cc----HHHHHHHHHHH
Confidence 00 02567899999
Q ss_pred HHhhc---CChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHH
Q 006250 420 WKLSK---GNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHI 496 (654)
Q Consensus 420 ~~La~---gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~l 496 (654)
++|+. +++++.+.+.+.|++++|+.||++++.++|++|+|||+||+.+ +++.++ .+
T Consensus 243 ~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~---~~~~~~------------------~i 301 (354)
T 3nmw_A 243 RNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR---NPKDQE------------------AL 301 (354)
T ss_dssp HHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS---CHHHHH------------------HH
T ss_pred HHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCC---CHHHHH------------------HH
Confidence 99997 8999999999999999999999999999999999999999743 222221 11
Q ss_pred hhhcCcchhhHHHHHHHHhhhcchhhhhccHHHHHHHhccCCHHHHHHHHHHHHhcccc
Q 006250 497 VEKADSDLLIPSIRAIGNLARTFRATETRIIGPLVNLLDEREPEVIMEATVALNKFATT 555 (654)
Q Consensus 497 l~~~~~~l~~~~~~alg~la~~~~~~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a~~ 555 (654)
+ +.|+||+|+++|++++..++++|+|||.|++.+
T Consensus 302 ~-------------------------~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 302 W-------------------------DMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp H-------------------------HTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred H-------------------------HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 1 247999999999999999999999999999854
No 26
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.96 E-value=1.1e-27 Score=282.08 Aligned_cols=330 Identities=14% Similarity=0.146 Sum_probs=280.0
Q ss_pred HcccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhc-CCHHHHHHhhccC-CHHHHHHHHHHHHHhcCCcchHHHHHHc
Q 006250 154 QIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEE-GGVPPLLKLAYEG-ELEGQENAARAIGLLGRDAESVEQIVNA 231 (654)
Q Consensus 154 lV~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~-G~Ip~LV~LL~s~-~~~~q~~Aa~AL~nLa~~~e~~~~iv~~ 231 (654)
|+.+|.++++.+|..|+.+|.+|+.+ +.++..+.+. |+|++|+++|+++ ++++++.|+++|.+|+.+++++..+.+.
T Consensus 155 Lv~lL~~~d~~vr~~A~~~L~~L~~~-~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~ 233 (780)
T 2z6g_A 155 LTKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKS 233 (780)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHHTS-HHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHT
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHhCC-ChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHc
Confidence 48899999999999999999999976 6678888754 8999999999876 7999999999999999998899999999
Q ss_pred CchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHHHHh
Q 006250 232 GVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVA 311 (654)
Q Consensus 232 GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~~~ 311 (654)
|+||.|+++|+++++.++..|+|+|.||+.+.++.+..+.+.|+|+.|+.+|+++. .
T Consensus 234 g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~----~------------------- 290 (780)
T 2z6g_A 234 GGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN----V------------------- 290 (780)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCC----H-------------------
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCC----H-------------------
Confidence 99999999999999999999999999999977889999999999999999997531 0
Q ss_pred hcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCccchhhh
Q 006250 312 SNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQV 391 (654)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 391 (654)
T Consensus 291 -------------------------------------------------------------------------------- 290 (780)
T 2z6g_A 291 -------------------------------------------------------------------------------- 290 (780)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCCh-hHHHHHHHHHHHHHhhccc
Q 006250 392 LGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPE-DVKHFSAMALMEITAVAEK 470 (654)
Q Consensus 392 ~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~-~v~~~aa~AL~~Iaa~ae~ 470 (654)
+++..|+.+|++++.++.+.+..+.+.|+++.|+.+|++++. .++..++.+|++++...+
T Consensus 291 ------------------~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~- 351 (780)
T 2z6g_A 291 ------------------KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS- 351 (780)
T ss_dssp ------------------HHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTT-
T ss_pred ------------------HHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChH-
Confidence 134567889999999999999999999999999999998875 456688999999985332
Q ss_pred ChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhh--hhccHHHHHHHhccCCHHHHHHHHHH
Q 006250 471 NSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRAT--ETRIIGPLVNLLDEREPEVIMEATVA 548 (654)
Q Consensus 471 ~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~--e~~~I~pLV~lL~~~~~~v~~eAa~A 548 (654)
.+.. ....++++.|+.++.+.+++++..++++|++|+...... ..++||+|+++|++.+.+++..|+|+
T Consensus 352 ---~~~~------i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~a 422 (780)
T 2z6g_A 352 ---NKPA------IVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGI 422 (780)
T ss_dssp ---HHHH------HHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred ---HHHH------HHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHH
Confidence 2221 112357889999999888899999999999999765432 23689999999999999999999999
Q ss_pred HHhccccCCCCCHHHHHHHHHCCCHHHHHHhhcc-CCc-chHHHHHHHHHHHHhCCCch----HHHHhhhhhHHHHh
Q 006250 549 LNKFATTENYLSETHSKAIINAGGVKHLIQLVYF-GEQ-MIQIPALTLLCYIAIKQPES----KTLAQEEVLIVLEW 619 (654)
Q Consensus 549 L~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~-~~~-~~q~~Al~~L~~ia~~~~~~----~~l~~~~~l~~l~~ 619 (654)
|++++.+. .++...+++.||+++|+++|.. ++. .++..|+.+|.+++.+.++. ..+..+++++.|..
T Consensus 423 L~~L~~~~----~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~ 495 (780)
T 2z6g_A 423 LSNLTCNN----YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVK 495 (780)
T ss_dssp HHHHTSSC----HHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhCC----HHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHH
Confidence 99997543 5788899999999999999986 343 58889999999997655553 36777888998873
No 27
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.95 E-value=6.1e-26 Score=227.47 Aligned_cols=237 Identities=26% Similarity=0.305 Sum_probs=210.5
Q ss_pred HHcccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCC-cchHHHHHHc
Q 006250 153 EQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRD-AESVEQIVNA 231 (654)
Q Consensus 153 ~lV~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~-~e~~~~iv~~ 231 (654)
.++.+|++++++.+..|+++|.+++..++++++.+++.|+||+|+++|+++++.++..|+++|++|+.+ ++++..+++.
T Consensus 6 ~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 85 (252)
T 4hxt_A 6 KLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDA 85 (252)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHC
Confidence 348999999999999999999999988778999999999999999999999999999999999999988 7899999999
Q ss_pred CchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHHHHh
Q 006250 232 GVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVA 311 (654)
Q Consensus 232 GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~~~ 311 (654)
|++|.|+++|++++++++..++|+|++|+..+++++..+.+.|+++.|+.+|++++
T Consensus 86 ~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~------------------------ 141 (252)
T 4hxt_A 86 GGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTD------------------------ 141 (252)
T ss_dssp THHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC------------------------
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC------------------------
Confidence 99999999999999999999999999999778999999999999999999996431
Q ss_pred hcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCccchhhh
Q 006250 312 SNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQV 391 (654)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 391 (654)
T Consensus 142 -------------------------------------------------------------------------------- 141 (252)
T 4hxt_A 142 -------------------------------------------------------------------------------- 141 (252)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccC
Q 006250 392 LGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKN 471 (654)
Q Consensus 392 ~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~ 471 (654)
+ .++..|+++|++|+.+++.+.+.+.+.|+++.|+.+|++++++++..++++|++|+.. +
T Consensus 142 -------------~----~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~---~ 201 (252)
T 4hxt_A 142 -------------S----EVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG---P 201 (252)
T ss_dssp -------------H----HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS---B
T ss_pred -------------H----HHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcC---C
Confidence 1 2456799999999999999999999999999999999999999999999999999742 2
Q ss_pred hHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhhhhccHHHHHHHhccCCHHHHHHHHHHHHh
Q 006250 472 SDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRATETRIIGPLVNLLDEREPEVIMEATVALNK 551 (654)
Q Consensus 472 ~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~ 551 (654)
++.++ .++ +.+++++|+++|++.+++++++|+|+|+|
T Consensus 202 ~~~~~------------------~l~-------------------------~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 238 (252)
T 4hxt_A 202 TSAIK------------------AIV-------------------------DAGGVEVLQKLLTSTDSEVQKEAQRALEN 238 (252)
T ss_dssp HHHHH------------------HHH-------------------------HTTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHHHH------------------HHH-------------------------HCCCHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 22211 011 24689999999999999999999999999
Q ss_pred ccccC
Q 006250 552 FATTE 556 (654)
Q Consensus 552 ~a~~~ 556 (654)
++...
T Consensus 239 l~~~~ 243 (252)
T 4hxt_A 239 IKSGG 243 (252)
T ss_dssp HHHTC
T ss_pred HHcCC
Confidence 97443
No 28
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.95 E-value=1.2e-25 Score=225.26 Aligned_cols=243 Identities=26% Similarity=0.296 Sum_probs=214.6
Q ss_pred CCHHHHHHhhccCCHHHHHHHHHHHHHhcCCc-chHHHHHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHH
Q 006250 191 GGVPPLLKLAYEGELEGQENAARAIGLLGRDA-ESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDH 269 (654)
Q Consensus 191 G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~-e~~~~iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~ 269 (654)
|+||.|+++|+++++++|..|+++|.+++.+. +++..+++.|++|.|+++|++++++++..++++|++|+.+++++++.
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 78999999999999999999999999999875 58999999999999999999999999999999999999977999999
Q ss_pred HHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchh
Q 006250 270 FAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSIS 349 (654)
Q Consensus 270 i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~ 349 (654)
+.+.|+++.|+.+|++++
T Consensus 82 ~~~~~~i~~l~~ll~~~~-------------------------------------------------------------- 99 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTD-------------------------------------------------------------- 99 (252)
T ss_dssp HHHTTHHHHHHHHTTCSS--------------------------------------------------------------
T ss_pred HHHCCCHHHHHHHHcCCC--------------------------------------------------------------
Confidence 999999999999996431
Q ss_pred hHHhhhhhhcccCCCcccccCCcccccccCCCCCCccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHH
Q 006250 350 NVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSI 429 (654)
Q Consensus 350 ~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~ 429 (654)
..++..|+++|++|+.+++++
T Consensus 100 -----------------------------------------------------------~~v~~~a~~~L~~l~~~~~~~ 120 (252)
T 4hxt_A 100 -----------------------------------------------------------SEVQKEAARALANIASGPDEA 120 (252)
T ss_dssp -----------------------------------------------------------HHHHHHHHHHHHHHTTSCHHH
T ss_pred -----------------------------------------------------------HHHHHHHHHHHHHHHcCCHHH
Confidence 124578999999999999999
Q ss_pred HHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHH
Q 006250 430 CRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSI 509 (654)
Q Consensus 430 ~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~ 509 (654)
+..+.+.|+++.|+.+|++++++++..++++|++|+...+ +.++ .++
T Consensus 121 ~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~---~~~~------------------~~~------------ 167 (252)
T 4hxt_A 121 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD---EAIK------------------AIV------------ 167 (252)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH---HHHH------------------HHH------------
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH---HHHH------------------HHH------------
Confidence 9999999999999999999999999999999999974322 1111 011
Q ss_pred HHHHHhhhcchhhhhccHHHHHHHhccCCHHHHHHHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhccCCcchHH
Q 006250 510 RAIGNLARTFRATETRIIGPLVNLLDEREPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQI 589 (654)
Q Consensus 510 ~alg~la~~~~~~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~ 589 (654)
+.+++++|+++|++.+++++..|+++|++++.. ++++...+++.|+++.|++++.++++.++.
T Consensus 168 -------------~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~----~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~ 230 (252)
T 4hxt_A 168 -------------DAGGVEVLVKLLTSTDSEVQKEAARALANIASG----PTSAIKAIVDAGGVEVLQKLLTSTDSEVQK 230 (252)
T ss_dssp -------------HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS----BHHHHHHHHHTTHHHHHHHGGGCSCHHHHH
T ss_pred -------------HCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcC----CHHHHHHHHHCCCHHHHHHHHCCCcHHHHH
Confidence 247899999999999999999999999999853 367888999999999999999998888999
Q ss_pred HHHHHHHHHHhCCCc
Q 006250 590 PALTLLCYIAIKQPE 604 (654)
Q Consensus 590 ~Al~~L~~ia~~~~~ 604 (654)
.|+.+|++++.+.+.
T Consensus 231 ~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 231 EAQRALENIKSGGWL 245 (252)
T ss_dssp HHHHHHHHHHHTCBC
T ss_pred HHHHHHHHHHcCCCc
Confidence 999999999876554
No 29
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.95 E-value=3.9e-26 Score=230.43 Aligned_cols=233 Identities=19% Similarity=0.266 Sum_probs=203.6
Q ss_pred HcccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcC-CcchHHHHHHcC
Q 006250 154 QIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGR-DAESVEQIVNAG 232 (654)
Q Consensus 154 lV~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~-~~e~~~~iv~~G 232 (654)
++..|++++++.+..|+++|+++...++.+++.+++.|+||+|+++|+++++.++..|+++|++|+. +++++..+++.|
T Consensus 17 ~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g 96 (252)
T 4db8_A 17 MTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG 96 (252)
T ss_dssp HHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcC
Confidence 3899999999999999999988655457889999999999999999999999999999999999998 578999999999
Q ss_pred chHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHHHHhh
Q 006250 233 VCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVAS 312 (654)
Q Consensus 233 aIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~~~~ 312 (654)
++|.|+++|+++++.+++.|+|+|+||+.+.+...+.+.+.|+++.|+.+|++++
T Consensus 97 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~------------------------- 151 (252)
T 4db8_A 97 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN------------------------- 151 (252)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSC-------------------------
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCC-------------------------
Confidence 9999999999999999999999999999955444489999999999999996431
Q ss_pred cCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCccchhhhh
Q 006250 313 NSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVL 392 (654)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 392 (654)
T Consensus 152 -------------------------------------------------------------------------------- 151 (252)
T 4db8_A 152 -------------------------------------------------------------------------------- 151 (252)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccCh
Q 006250 393 GGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNS 472 (654)
Q Consensus 393 ~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~ 472 (654)
+ .++..|+++|++|+.+++++.+.+.+.|+++.|+.+|++++++++.+|+++|++|+.. ++
T Consensus 152 ------------~----~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~---~~ 212 (252)
T 4db8_A 152 ------------E----QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG---GN 212 (252)
T ss_dssp ------------H----HHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTS---CH
T ss_pred ------------H----HHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcC---CH
Confidence 1 2456899999999999999999999999999999999999999999999999999742 22
Q ss_pred HhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhhhhccHHHHHHHhccCCHHHHHHHHHHHHhc
Q 006250 473 DLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRATETRIIGPLVNLLDEREPEVIMEATVALNKF 552 (654)
Q Consensus 473 ~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~ 552 (654)
+.++ .++ +.+++++|+++|.+.+++++++|+|+|+|+
T Consensus 213 ~~~~------------------~~~-------------------------~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l 249 (252)
T 4db8_A 213 EQKQ------------------AVK-------------------------EAGALEKLEQLQSHENEKIQKEAQEALEKL 249 (252)
T ss_dssp HHHH------------------HHH-------------------------HTTHHHHHHTTTTCSSSHHHHTHHHHHHTT
T ss_pred HHHH------------------HHH-------------------------HCCcHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 2111 011 246899999999999999999999999998
Q ss_pred c
Q 006250 553 A 553 (654)
Q Consensus 553 a 553 (654)
+
T Consensus 250 ~ 250 (252)
T 4db8_A 250 Q 250 (252)
T ss_dssp C
T ss_pred h
Confidence 6
No 30
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.93 E-value=7.5e-25 Score=220.97 Aligned_cols=240 Identities=20% Similarity=0.265 Sum_probs=208.1
Q ss_pred cCCHHHHHHhhccCCHHHHHHHHHHHHHhcC-CcchHHHHHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHH
Q 006250 190 EGGVPPLLKLAYEGELEGQENAARAIGLLGR-DAESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQD 268 (654)
Q Consensus 190 ~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~-~~e~~~~iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~ 268 (654)
....+.++.+|+++++++|..|+++|.++.. +++++..+++.|+||.|+++|++++++++..|+++|++|+.+++++++
T Consensus 11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 3568999999999999999999999987654 567889999999999999999999999999999999999998899999
Q ss_pred HHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcch
Q 006250 269 HFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSI 348 (654)
Q Consensus 269 ~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i 348 (654)
.+.+.|+++.|+.+|++++
T Consensus 91 ~i~~~g~i~~L~~lL~~~~------------------------------------------------------------- 109 (252)
T 4db8_A 91 AVIDAGALPALVQLLSSPN------------------------------------------------------------- 109 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSC-------------------------------------------------------------
T ss_pred HHHHcCCHHHHHHHHcCCC-------------------------------------------------------------
Confidence 9999999999999996531
Q ss_pred hhHHhhhhhhcccCCCcccccCCcccccccCCCCCCccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChH
Q 006250 349 SNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLS 428 (654)
Q Consensus 349 ~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~ 428 (654)
+ .++..|+++|++|+.+...
T Consensus 110 --------------------------------------------------------~----~v~~~a~~~L~~l~~~~~~ 129 (252)
T 4db8_A 110 --------------------------------------------------------E----QILQEALWALSNIASGGNE 129 (252)
T ss_dssp --------------------------------------------------------H----HHHHHHHHHHHHHTTSCHH
T ss_pred --------------------------------------------------------H----HHHHHHHHHHHHhhcCCch
Confidence 0 2456899999999998776
Q ss_pred HHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHH
Q 006250 429 ICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPS 508 (654)
Q Consensus 429 ~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~ 508 (654)
.+..+.+.|+++.|+.+|++++.+++.+++|+|++|+.... +.++ .++
T Consensus 130 ~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~---~~~~------------------~~~----------- 177 (252)
T 4db8_A 130 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN---EQIQ------------------AVI----------- 177 (252)
T ss_dssp HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH---HHHH------------------HHH-----------
T ss_pred HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh---HHHH------------------HHH-----------
Confidence 66899999999999999999999999999999999974321 1111 011
Q ss_pred HHHHHHhhhcchhhhhccHHHHHHHhccCCHHHHHHHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhccCCcchH
Q 006250 509 IRAIGNLARTFRATETRIIGPLVNLLDEREPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQ 588 (654)
Q Consensus 509 ~~alg~la~~~~~~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q 588 (654)
+.++||+|+++|++.+.+++..|+++|++++.. ++++...+++.|++++|++++.++++.++
T Consensus 178 --------------~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~----~~~~~~~~~~~g~i~~L~~ll~~~~~~v~ 239 (252)
T 4db8_A 178 --------------DAGALPALVQLLSSPNEQILQEALWALSNIASG----GNEQKQAVKEAGALEKLEQLQSHENEKIQ 239 (252)
T ss_dssp --------------HTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTS----CHHHHHHHHHTTHHHHHHTTTTCSSSHHH
T ss_pred --------------HCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcC----CHHHHHHHHHCCcHHHHHHHhCCCCHHHH
Confidence 247999999999999999999999999999853 36788899999999999999999988899
Q ss_pred HHHHHHHHHHHh
Q 006250 589 IPALTLLCYIAI 600 (654)
Q Consensus 589 ~~Al~~L~~ia~ 600 (654)
..|+.+|++++.
T Consensus 240 ~~A~~~L~~l~~ 251 (252)
T 4db8_A 240 KEAQEALEKLQS 251 (252)
T ss_dssp HTHHHHHHTTC-
T ss_pred HHHHHHHHHHhc
Confidence 999999998853
No 31
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.92 E-value=1.1e-23 Score=206.79 Aligned_cols=191 Identities=19% Similarity=0.238 Sum_probs=177.6
Q ss_pred HcccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcC-CcchHHHHHHcC
Q 006250 154 QIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGR-DAESVEQIVNAG 232 (654)
Q Consensus 154 lV~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~-~~e~~~~iv~~G 232 (654)
++.+|++++++++..|+++|.+++..++.++..+++.|+||+|+++|+++++.+++.|+++|+||+. +++++..+++.|
T Consensus 17 l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g 96 (210)
T 4db6_A 17 MVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG 96 (210)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCC
Confidence 3889999999999999999999997778999999999999999999999999999999999999996 468899999999
Q ss_pred chHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHHHHhh
Q 006250 233 VCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVAS 312 (654)
Q Consensus 233 aIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~~~~ 312 (654)
++|.|+++|+++++.++..|+|+|+||+.++++.++.+.+.|+++.|+.+|++++
T Consensus 97 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~------------------------- 151 (210)
T 4db6_A 97 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN------------------------- 151 (210)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC-------------------------
T ss_pred CHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCC-------------------------
Confidence 9999999999999999999999999999888899999999999999999996431
Q ss_pred cCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCccchhhhh
Q 006250 313 NSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVL 392 (654)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 392 (654)
T Consensus 152 -------------------------------------------------------------------------------- 151 (210)
T 4db6_A 152 -------------------------------------------------------------------------------- 151 (210)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHH
Q 006250 393 GGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEIT 465 (654)
Q Consensus 393 ~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Ia 465 (654)
..++..|+++|++|+.+++++++.+.+.|+++.|+.++++++.++|++|+++|.+++
T Consensus 152 ----------------~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 152 ----------------EQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp ----------------HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred ----------------HHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 124578999999999999999999999999999999999999999999999999986
No 32
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.91 E-value=4e-23 Score=237.30 Aligned_cols=324 Identities=14% Similarity=0.111 Sum_probs=256.8
Q ss_pred hhhhhHHHHcccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhc-CCHHHHHHhhcc-CCHHHHHHHHHHHHHhcCCcc
Q 006250 146 PILCLIWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEE-GGVPPLLKLAYE-GELEGQENAARAIGLLGRDAE 223 (654)
Q Consensus 146 ~i~~~v~~lV~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~-G~Ip~LV~LL~s-~~~~~q~~Aa~AL~nLa~~~e 223 (654)
.+.-++..+++.|..++.+.+..|+..|.+++.+ ++.|+.+++. |.++.|+.++++ ++..+...++..|.||+...+
T Consensus 331 si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~-~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~ 409 (778)
T 3opb_A 331 NLKQLSEIFINAISRRIVPKVEMSVEALAYLSLK-ASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPE 409 (778)
T ss_dssp CHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTS-SHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCC
T ss_pred cHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCC-HHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCc
Confidence 3444556668888887777799999999999976 7788888766 669999999995 678899999999999997421
Q ss_pred ---------------------------------------hHHHHHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhcCCh
Q 006250 224 ---------------------------------------SVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHP 264 (654)
Q Consensus 224 ---------------------------------------~~~~iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~ 264 (654)
++..++++|+||+|+.+++++++.+|+.++|+|.||+. ++
T Consensus 410 ~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~-d~ 488 (778)
T 3opb_A 410 EXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITR-SK 488 (778)
T ss_dssp CCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHT-SG
T ss_pred ccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CH
Confidence 46678899999999999999999999999999999998 68
Q ss_pred hhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCC
Q 006250 265 KCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQA 344 (654)
Q Consensus 265 ~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 344 (654)
++|..++++|++++|+.+|.+++..+
T Consensus 489 ~~R~~lvqqGal~~LL~lL~s~~~~~------------------------------------------------------ 514 (778)
T 3opb_A 489 NFIPQLAQQGAVKIILEYLANKQDIG------------------------------------------------------ 514 (778)
T ss_dssp GGHHHHHHTTHHHHHHHHTTCC---C------------------------------------------------------
T ss_pred HHHHHHHHCCCHHHHHHHHhcCCCcc------------------------------------------------------
Confidence 99999999999999999997653100
Q ss_pred CcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhc
Q 006250 345 NSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSK 424 (654)
Q Consensus 345 ~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~ 424 (654)
+ ..|..|++||.+|..
T Consensus 515 -----------------------------------------------------------~-----~~k~~AA~ALArLli 530 (778)
T 3opb_A 515 -----------------------------------------------------------E-----PIRILGCRALTRMLI 530 (778)
T ss_dssp -----------------------------------------------------------C-----HHHHHHHHHHHHHHH
T ss_pred -----------------------------------------------------------h-----HHHHHHHHHHHHHHh
Confidence 0 135678888888873
Q ss_pred -CChHHHHHHH--h-hCcHHHHHHhhccCCh--------------hHHHHHHHHHHHHHhhcccC-hHhhhhccCCCchH
Q 006250 425 -GNLSICRNLT--E-SRALLCFAVLLEKGPE--------------DVKHFSAMALMEITAVAEKN-SDLRRSAFKPTSTA 485 (654)
Q Consensus 425 -gn~~~~~~i~--e-~gaL~~L~~LL~~~~~--------------~v~~~aa~AL~~Iaa~ae~~-~~lrr~a~~~~s~~ 485 (654)
.|+.+. +. + .|++++|+.||..++. -.+++|++||.||+....+. .++|+..++.
T Consensus 531 s~np~~~--f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~---- 604 (778)
T 3opb_A 531 FTNPGLI--FKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVST---- 604 (778)
T ss_dssp TSCHHHH--SSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHS----
T ss_pred cCCHHHH--cCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHh----
Confidence 344432 21 1 3899999999983211 13889999999998665321 2455532211
Q ss_pred HHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchh-------hh----hccHHHHHHHhccCCHHHHHHHHHHHHhccc
Q 006250 486 AKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRA-------TE----TRIIGPLVNLLDEREPEVIMEATVALNKFAT 554 (654)
Q Consensus 486 ~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~-------~e----~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a~ 554 (654)
+++++.|..++.++++.++..+++.|.||+..... .+ .+.+++||.|+++.+.+++++|+|||+++++
T Consensus 605 -~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts 683 (778)
T 3opb_A 605 -KVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIAT 683 (778)
T ss_dssp -HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred -cCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Confidence 35788999999988899999999999999964321 11 1248999999999999999999999999964
Q ss_pred cCCCCCHHHHHHHHHC-CCHHHHHHhhcc--CCcchHHHHHHHHHHHHh
Q 006250 555 TENYLSETHSKAIINA-GGVKHLIQLVYF--GEQMIQIPALTLLCYIAI 600 (654)
Q Consensus 555 ~~n~~~~~~~~~Iv~~-ggi~~Lv~LL~~--~~~~~q~~Al~~L~~ia~ 600 (654)
+. +..++.|++. +|++.|+.++.. +++.+|..++.+++|++.
T Consensus 684 ~~----~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 684 TI----PLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HC----HHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred CC----hHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 42 5678999998 899999999998 677789999999999985
No 33
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.91 E-value=7.2e-24 Score=213.95 Aligned_cols=208 Identities=12% Similarity=0.099 Sum_probs=172.6
Q ss_pred HHHHcccccCCCH--HHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCC-cchHHH
Q 006250 151 IWEQIAILHTGSM--EEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRD-AESVEQ 227 (654)
Q Consensus 151 v~~lV~lL~s~~~--~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~-~e~~~~ 227 (654)
+..+|++|+++++ +.+..|+++|.+++..+++++..|++.|+||+||++|+++++++|+.|+|||+||+.+ ++++..
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~ 89 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLE 89 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 4445999999988 8899999999999987789999999999999999999999999999999999999985 799999
Q ss_pred HHHcCchHHHHHhhc-CCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhh
Q 006250 228 IVNAGVCSTFAKNLK-DGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLH 306 (654)
Q Consensus 228 iv~~GaIp~Lv~LL~-s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~ 306 (654)
|+++|+||+|+++|+ +++.+++++|+.+|.||+. .++++..|.+ ++||+|+.++... ++-+ .
T Consensus 90 I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~-~~~~k~~i~~-~~i~~Lv~ll~~p----~sG~----~------- 152 (233)
T 3tt9_A 90 VAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS-NDKLKNLMIT-EALLTLTENIIIP----FSGW----P------- 152 (233)
T ss_dssp HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-SGGGHHHHHH-HHHHHHCCCCCHH----HHCC----C-------
T ss_pred HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc-ChhhHHHHHh-ccHHHHHHHHhcc----ccCC----c-------
Confidence 999999999999998 5789999999999999998 6788988887 4799999987421 0000 0
Q ss_pred HHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCcc
Q 006250 307 SALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQH 386 (654)
Q Consensus 307 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (654)
++
T Consensus 153 -----------------------------------~~------------------------------------------- 154 (233)
T 3tt9_A 153 -----------------------------------EG------------------------------------------- 154 (233)
T ss_dssp -----------------------------------GG-------------------------------------------
T ss_pred -----------------------------------cc-------------------------------------------
Confidence 00
Q ss_pred chhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhh-CcHHHHHHhhccC------ChhHHHHHHH
Q 006250 387 QDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTES-RALLCFAVLLEKG------PEDVKHFSAM 459 (654)
Q Consensus 387 ~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~-gaL~~L~~LL~~~------~~~v~~~aa~ 459 (654)
...|.....|+ .++.+|+.+|+||+.++++..+.|.+. |.+++|+.+++.+ +...+.+|..
T Consensus 155 --------~~~~~~~~~~~----~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~ 222 (233)
T 3tt9_A 155 --------DYPKANGLLDF----DIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVC 222 (233)
T ss_dssp --------GCCCCCTTCCH----HHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred --------ccccccccchH----HHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHH
Confidence 00001112344 478999999999999888999999887 5679999999874 4468899999
Q ss_pred HHHHHH
Q 006250 460 ALMEIT 465 (654)
Q Consensus 460 AL~~Ia 465 (654)
+|.|++
T Consensus 223 ~L~nLs 228 (233)
T 3tt9_A 223 ILHNLS 228 (233)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 999986
No 34
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.91 E-value=7.9e-23 Score=214.00 Aligned_cols=187 Identities=16% Similarity=0.164 Sum_probs=149.5
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccC-ChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHH
Q 006250 411 MKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKG-PEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAV 489 (654)
Q Consensus 411 lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~-~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~v 489 (654)
++..|+++|++++.+|+..++.+++.|++++|+.||++. +.+++++|+|||++|+++.. ... +.
T Consensus 98 vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~---~~~-----------~~- 162 (296)
T 1xqr_A 98 LRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQE---AGL-----------LQ- 162 (296)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCH---HHH-----------HH-
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCc---HHH-----------HH-
Confidence 567899999999999999999999999999999999964 78999999999999985432 111 11
Q ss_pred HHHHHHHhhhcCcchhhHHHHHHHHhhhcchhhhhccHHHHHHHhccCCHHHHHHHHHHHHhccccCCCCCHHHHHHHHH
Q 006250 490 LEQLLHIVEKADSDLLIPSIRAIGNLARTFRATETRIIGPLVNLLDEREPEVIMEATVALNKFATTENYLSETHSKAIIN 569 (654)
Q Consensus 490 v~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~ 569 (654)
++ +.++||+|+++|+++++.++++|+|+|++++.++ +++...+++
T Consensus 163 ------~~-------------------------~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~----~~~~~~vv~ 207 (296)
T 1xqr_A 163 ------FL-------------------------RLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGH----PEHKGTLCS 207 (296)
T ss_dssp ------HH-------------------------HTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC----GGGHHHHHH
T ss_pred ------HH-------------------------HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC----hHHHHHHHH
Confidence 11 1368999999999999999999999999998653 578999999
Q ss_pred CCCHHHHHHhhccCCcchHHHHHHHHHHHHhCCCchHHHHhh---hhhHHHHhhhhhhhhhcCcc-HHhHHHHHHHHHHh
Q 006250 570 AGGVKHLIQLVYFGEQMIQIPALTLLCYIAIKQPESKTLAQE---EVLIVLEWSFKQAHLVAEPS-IEALLPEAKSTLAT 645 (654)
Q Consensus 570 ~ggi~~Lv~LL~~~~~~~q~~Al~~L~~ia~~~~~~~~l~~~---~~l~~l~~~~~~~~~~q~~~-~~~l~~~a~~~l~~ 645 (654)
.|++++|+.||.+++..+|..|+.+|.+++...+........ .....|+.. .+.+|.++ .+++|.+|..+++.
T Consensus 208 ~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~---~~~lq~~e~~~e~~~~~~~il~~ 284 (296)
T 1xqr_A 208 MGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHR---CQLLQQHEEYQEELEFCEKLLQT 284 (296)
T ss_dssp TTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHH---HHHHTTCGGGHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHH---HHHccchHHHHHHHHHHHHHHHH
Confidence 999999999999999989999999999997653332222222 233455533 44567554 89999999999999
Q ss_pred hhcCC
Q 006250 646 YQSRD 650 (654)
Q Consensus 646 y~~~~ 650 (654)
||+..
T Consensus 285 ~f~~~ 289 (296)
T 1xqr_A 285 CFSSP 289 (296)
T ss_dssp HCC--
T ss_pred HcCCC
Confidence 99753
No 35
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.90 E-value=3.4e-22 Score=196.05 Aligned_cols=198 Identities=18% Similarity=0.259 Sum_probs=172.6
Q ss_pred hcCCHHHHHHhhccCCHHHHHHHHHHHHHhcC-CcchHHHHHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhH
Q 006250 189 EEGGVPPLLKLAYEGELEGQENAARAIGLLGR-DAESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQ 267 (654)
Q Consensus 189 e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~-~~e~~~~iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r 267 (654)
..|+.|+|+.||++++++++..|+++|.+|+. +++++..+++.|++|.|+++|++++++++..|+|+|+||+.++++.+
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 36899999999999999999999999999995 46889999999999999999999999999999999999998789999
Q ss_pred HHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcc
Q 006250 268 DHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSS 347 (654)
Q Consensus 268 ~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 347 (654)
+.+.+.|+++.|+.+|++++
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~------------------------------------------------------------ 109 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPN------------------------------------------------------------ 109 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSC------------------------------------------------------------
T ss_pred HHHHHCCCHHHHHHHHcCCc------------------------------------------------------------
Confidence 99999999999999996531
Q ss_pred hhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCCh
Q 006250 348 ISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNL 427 (654)
Q Consensus 348 i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~ 427 (654)
+ .++..|+++|++|+.+++
T Consensus 110 ---------------------------------------------------------~----~v~~~a~~~L~~l~~~~~ 128 (210)
T 4db6_A 110 ---------------------------------------------------------E----QILQEALWALSNIASGGN 128 (210)
T ss_dssp ---------------------------------------------------------H----HHHHHHHHHHHHHTTSCH
T ss_pred ---------------------------------------------------------H----HHHHHHHHHHHHHHcCCH
Confidence 1 245689999999999999
Q ss_pred HHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhH
Q 006250 428 SICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIP 507 (654)
Q Consensus 428 ~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~ 507 (654)
++.+.+.+.|+++.|+.+|++++.+++.+|+|+|++++... ++.++ .+
T Consensus 129 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~---~~~~~------------------~~----------- 176 (210)
T 4db6_A 129 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG---NEQKQ------------------AV----------- 176 (210)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC---HHHHH------------------HH-----------
T ss_pred HHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC---cHHHH------------------HH-----------
Confidence 99999999999999999999999999999999999997432 22211 01
Q ss_pred HHHHHHHhhhcchhhhhccHHHHHHHhccCCHHHHHHHHHHHHhcc
Q 006250 508 SIRAIGNLARTFRATETRIIGPLVNLLDEREPEVIMEATVALNKFA 553 (654)
Q Consensus 508 ~~~alg~la~~~~~~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a 553 (654)
.+.++|++|+++|++.+.+++++|+++|.+++
T Consensus 177 --------------~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 177 --------------KEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp --------------HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred --------------HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 12478999999999999999999999999986
No 36
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.88 E-value=3.7e-22 Score=201.48 Aligned_cols=196 Identities=18% Similarity=0.134 Sum_probs=159.7
Q ss_pred CHHHHHHhhccCCH--HHHHHHHHHHHHhcC-CcchHHHHHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHH
Q 006250 192 GVPPLLKLAYEGEL--EGQENAARAIGLLGR-DAESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQD 268 (654)
Q Consensus 192 ~Ip~LV~LL~s~~~--~~q~~Aa~AL~nLa~-~~e~~~~iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~ 268 (654)
.||+||++|+++++ .+|..|+++|.+|+. +++++..|++.|+||+||++|+++++++|+.|+|+|.||+.++++++.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 58999999999987 899999999999995 578999999999999999999999999999999999999997899999
Q ss_pred HHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcch
Q 006250 269 HFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSI 348 (654)
Q Consensus 269 ~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i 348 (654)
.|+++|+||+||.+|++..
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~------------------------------------------------------------- 107 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTR------------------------------------------------------------- 107 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCC-------------------------------------------------------------
T ss_pred HHHHcCCHHHHHHHHccCC-------------------------------------------------------------
Confidence 9999999999999996321
Q ss_pred hhHHhhhhhhcccCCCcccccCCcccccccCCCCCCccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChH
Q 006250 349 SNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLS 428 (654)
Q Consensus 349 ~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~ 428 (654)
+ ..+++.|+.|||+|+. ++.
T Consensus 108 -------------------------------------------------------~----~~~~e~a~~aL~nLS~-~~~ 127 (233)
T 3tt9_A 108 -------------------------------------------------------D----LETKKQITGLLWNLSS-NDK 127 (233)
T ss_dssp -------------------------------------------------------C----HHHHHHHHHHHHHHHT-SGG
T ss_pred -------------------------------------------------------C----HHHHHHHHHHHHHHHc-Chh
Confidence 0 1256789999999997 567
Q ss_pred HHHHHHhhCcHHHHHHhhc----------------cCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHH
Q 006250 429 ICRNLTESRALLCFAVLLE----------------KGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQ 492 (654)
Q Consensus 429 ~~~~i~e~gaL~~L~~LL~----------------~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~ 492 (654)
+...|.+ +++++|+.++. ..+.++++||+++|.|++.. +++.|+..-.. .++|+.
T Consensus 128 ~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~---~~~~R~~~r~~-----~Gli~~ 198 (233)
T 3tt9_A 128 LKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSA---GADGRKAMRRC-----DGLIDS 198 (233)
T ss_dssp GHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTS---CHHHHHHHHTS-----TTHHHH
T ss_pred hHHHHHh-ccHHHHHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHhcC---CHHHHHHHHHC-----CCcHHH
Confidence 7777876 57999988763 12569999999999999853 33445432111 346777
Q ss_pred HHHHhhhc------CcchhhHHHHHHHHhhh
Q 006250 493 LLHIVEKA------DSDLLIPSIRAIGNLAR 517 (654)
Q Consensus 493 L~~ll~~~------~~~l~~~~~~alg~la~ 517 (654)
|+.+++.. ++..++.|+.+|.||+.
T Consensus 199 Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 199 LVHYVRGTIADYQPDDKATENCVCILHNLSY 229 (233)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence 88777753 34567788888888874
No 37
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.88 E-value=6.9e-22 Score=206.84 Aligned_cols=185 Identities=17% Similarity=0.133 Sum_probs=168.7
Q ss_pred CCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHH-hhccCCHHHHHHHHHHHHHhcCC-cchHHHHHHcCchHHHH
Q 006250 161 GSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLK-LAYEGELEGQENAARAIGLLGRD-AESVEQIVNAGVCSTFA 238 (654)
Q Consensus 161 ~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~-LL~s~~~~~q~~Aa~AL~nLa~~-~e~~~~iv~~GaIp~Lv 238 (654)
++.+.|..|+..|.++..+ .++...+++.|++|+||. +|+++++.+|+.|+|+|+|++.+ ++.+..+++.|++|+|+
T Consensus 52 ~~~e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll 130 (296)
T 1xqr_A 52 ADQQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL 130 (296)
T ss_dssp HHHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHH
Confidence 3557899999999999964 779999999999999999 99999999999999999999986 67899999999999999
Q ss_pred HhhcC-CChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHHHHhhcCCCC
Q 006250 239 KNLKD-GHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVASNSQNP 317 (654)
Q Consensus 239 ~LL~s-~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~~~~~~~~~ 317 (654)
++|++ ++..+++.|+|+|+||+.+++...+.|.+.|++|+|+.+|+++.
T Consensus 131 ~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d------------------------------ 180 (296)
T 1xqr_A 131 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQV------------------------------ 180 (296)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSC------------------------------
T ss_pred HHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCC------------------------------
Confidence 99996 47899999999999999988888899999999999999996431
Q ss_pred CCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCccchhhhhcCCCC
Q 006250 318 KDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVLGGTST 397 (654)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 397 (654)
T Consensus 181 -------------------------------------------------------------------------------- 180 (296)
T 1xqr_A 181 -------------------------------------------------------------------------------- 180 (296)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhh
Q 006250 398 KGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAV 467 (654)
Q Consensus 398 ~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ 467 (654)
..++..|++||.+|+.|++++++.+++.|+++.|+.||++++.+++..+++||++|..+
T Consensus 181 -----------~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 181 -----------QKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp -----------HHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred -----------HHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 12567899999999999999999999999999999999999999999999999999865
No 38
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.87 E-value=5.4e-21 Score=219.70 Aligned_cols=291 Identities=12% Similarity=0.111 Sum_probs=223.9
Q ss_pred HHHHcccccC-CCHHHHHHHHHHHHHhccCCch--------------------------------------hHHHHHhcC
Q 006250 151 IWEQIAILHT-GSMEEKCDAAASLVSLARDNDR--------------------------------------YGKLIIEEG 191 (654)
Q Consensus 151 v~~lV~lL~s-~~~~~k~~Aa~aL~~La~~~~~--------------------------------------~~~~I~e~G 191 (654)
+..|+.+|++ ++......++..|.|++...+. +++.+.++|
T Consensus 378 L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaG 457 (778)
T 3opb_A 378 TEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTE 457 (778)
T ss_dssp HHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCc
Confidence 3345777774 6677788888888888763221 577889999
Q ss_pred CHHHHHHhhccCCHHHHHHHHHHHHHhcCCcchHHHHHHcCchHHHHHhhcCCChh---HHHHHHHHHHHHhc-CChhhH
Q 006250 192 GVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIVNAGVCSTFAKNLKDGHMK---VQSVVAWAVSELAS-NHPKCQ 267 (654)
Q Consensus 192 ~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~~iv~~GaIp~Lv~LL~s~~~~---vq~~Aa~aL~nLa~-~~~~~r 267 (654)
+||+|+.+++++++..|+.|+|+|.||+.++++|..+++.|++++|+++|.++... ++..|+.||++|+. .+|.
T Consensus 458 vIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~-- 535 (778)
T 3opb_A 458 LISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPG-- 535 (778)
T ss_dssp HHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHH--
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHH--
Confidence 99999999999999999999999999999999999999999999999999987644 89999999999985 2333
Q ss_pred HHHHh---CCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCC
Q 006250 268 DHFAQ---NNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQA 344 (654)
Q Consensus 268 ~~i~~---~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 344 (654)
..|.. .|+||||+.||..++..... +++
T Consensus 536 ~~f~~~~~~~aI~pLv~LL~~~~~~~~~-----------~l~-------------------------------------- 566 (778)
T 3opb_A 536 LIFKKYSALNAIPFLFELLPRSTPVDDN-----------PLH-------------------------------------- 566 (778)
T ss_dssp HHSSSSCSTTHHHHHHHTSCCSSSCSSC-----------C----------------------------------------
T ss_pred HHcCCCccccchHHHHHHcCCCCCcccc-----------ccc--------------------------------------
Confidence 33322 48999999999742100000 000
Q ss_pred CcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhc
Q 006250 345 NSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSK 424 (654)
Q Consensus 345 ~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~ 424 (654)
+ + .+-| ...+..|+.||.|||.
T Consensus 567 -----------------------------------~-------------------~-~~~~---~l~~feAL~ALTNLAs 588 (778)
T 3opb_A 567 -----------------------------------N-------------------D-EQIK---LTDNYEALLALTNLAS 588 (778)
T ss_dssp -------------------------------------------------------C-CCCC---HHHHHHHHHHHHHHHH
T ss_pred -----------------------------------c-------------------c-cccc---HHHHHHHHHHHHHHhc
Confidence 0 0 0001 1135689999999999
Q ss_pred CC----hHHHHHHHh-hCcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccChHhh-hhccCCCchHHHHHHHHHHHHhh
Q 006250 425 GN----LSICRNLTE-SRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLR-RSAFKPTSTAAKAVLEQLLHIVE 498 (654)
Q Consensus 425 gn----~~~~~~i~e-~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lr-r~a~~~~s~~~~~vv~~L~~ll~ 498 (654)
.+ .+.++.|+. .|++++|..||.+++..||+.|+++|+|++... +-+ +..|...+|.+..-++.|+.++.
T Consensus 589 ~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~----e~i~~k~~~~~~~~~~~rL~lLV~Ll~ 664 (778)
T 3opb_A 589 SETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHP----LTIAAKFFNLENPQSLRNFNILVKLLQ 664 (778)
T ss_dssp CCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSG----GGTGGGTSCCSSHHHHHHHHHHHHGGG
T ss_pred CCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCc----HHHHHHHHhhcCchhhccHHHHHHHHc
Confidence 76 345677887 499999999999999999999999999998633 322 22344445655556899999999
Q ss_pred hcCcchhhHHHHHHHHhhhcchhh------hhccHHHHHHHhcc--CCHHHHHHHHHHHHhccc
Q 006250 499 KADSDLLIPSIRAIGNLARTFRAT------ETRIIGPLVNLLDE--REPEVIMEATVALNKFAT 554 (654)
Q Consensus 499 ~~~~~l~~~~~~alg~la~~~~~~------e~~~I~pLV~lL~~--~~~~v~~eAa~AL~~~a~ 554 (654)
.+|.+++..++++|++++..+... +.++|.+|+++|.+ .+.+++..++..+.|+++
T Consensus 665 s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 665 LSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999997655431 23789999999988 899999999999999985
No 39
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.58 E-value=2.2e-13 Score=139.57 Aligned_cols=248 Identities=14% Similarity=0.157 Sum_probs=179.8
Q ss_pred HcccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcchHHHHHHcCc
Q 006250 154 QIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIVNAGV 233 (654)
Q Consensus 154 lV~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~~iv~~Ga 233 (654)
++..|.++++.+|..|+++|+++.. .+.+++|+.+|+++++.++..|+++|+.+...++.... .
T Consensus 28 L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~-----l 91 (280)
T 1oyz_A 28 LFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDN-----V 91 (280)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHH-----H
T ss_pred HHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchH-----H
Confidence 4888999999999999999999862 24689999999999999999999999998754332111 3
Q ss_pred hHHHH-HhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHHHHhh
Q 006250 234 CSTFA-KNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVAS 312 (654)
Q Consensus 234 Ip~Lv-~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~~~~ 312 (654)
++.|. .+++++++.++..++++|+++...++.... .+++.|+.+|.+
T Consensus 92 ~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~-----~~~~~L~~~l~d--------------------------- 139 (280)
T 1oyz_A 92 FNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITAFD--------------------------- 139 (280)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTC---------------------------
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccH-----HHHHHHHHHhhC---------------------------
Confidence 34444 245778899999999999999854432211 134444444432
Q ss_pred cCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCccchhhhh
Q 006250 313 NSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVL 392 (654)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 392 (654)
T Consensus 140 -------------------------------------------------------------------------------- 139 (280)
T 1oyz_A 140 -------------------------------------------------------------------------------- 139 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccCh
Q 006250 393 GGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNS 472 (654)
Q Consensus 393 ~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~ 472 (654)
++| .++..|+++|+++.. ..+++.|..+|++++..|+..++++|..+.. ..
T Consensus 140 ----------~~~----~vR~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---~~- 190 (280)
T 1oyz_A 140 ----------KST----NVRRATAFAISVIND-----------KATIPLLINLLKDPNGDVRNWAAFAININKY---DN- 190 (280)
T ss_dssp ----------SCH----HHHHHHHHHHHTC--------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTC---CC-
T ss_pred ----------CCH----HHHHHHHHHHHhcCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhcc---Cc-
Confidence 122 245678888887632 2589999999999999999999999988731 11
Q ss_pred HhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhhhhccHHHHHHHhccCCHHHHHHHHHHHHhc
Q 006250 473 DLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRATETRIIGPLVNLLDEREPEVIMEATVALNKF 552 (654)
Q Consensus 473 ~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~ 552 (654)
..+++.|+.++++.++.++..++++||.+. ....+++|+.+|++.+ |+..|++||+++
T Consensus 191 --------------~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~------~~~~~~~L~~~l~d~~--vr~~a~~aL~~i 248 (280)
T 1oyz_A 191 --------------SDIRDCFVEMLQDKNEEVRIEAIIGLSYRK------DKRVLSVLCDELKKNT--VYDDIIEAAGEL 248 (280)
T ss_dssp --------------HHHHHHHHHHTTCSCHHHHHHHHHHHHHTT------CGGGHHHHHHHHTSSS--CCHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhC------CHhhHHHHHHHhcCcc--HHHHHHHHHHhc
Confidence 245678888998888999999999999887 2468999999997754 889999999998
Q ss_pred cccCCCCCHHHHHHHHHCCCHHHHHHhhccC-CcchHHHHHHHH
Q 006250 553 ATTENYLSETHSKAIINAGGVKHLIQLVYFG-EQMIQIPALTLL 595 (654)
Q Consensus 553 a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~-~~~~q~~Al~~L 595 (654)
.. ...++.|.+++... ++.+...++..|
T Consensus 249 ~~---------------~~~~~~L~~~l~~~~~~~~~~~~~~~l 277 (280)
T 1oyz_A 249 GD---------------KTLLPVLDTMLYKFDDNEIITSAIDKL 277 (280)
T ss_dssp CC---------------GGGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred Cc---------------hhhhHHHHHHHhcCCCcHHHHHHHHHh
Confidence 42 13578889988754 343333345444
No 40
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.58 E-value=2.1e-13 Score=139.75 Aligned_cols=260 Identities=15% Similarity=0.121 Sum_probs=194.1
Q ss_pred HHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcchHHHHHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhh
Q 006250 187 IIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKC 266 (654)
Q Consensus 187 I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~~iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~ 266 (654)
+.+.+.++.|+.+|+++++.++..|+++|+++.. .+++|.|+++|+++++.++..|+++|+.+.... .
T Consensus 19 ~~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~-~- 86 (280)
T 1oyz_A 19 QCKKLNDDELFRLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK-K- 86 (280)
T ss_dssp HHHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT-T-
T ss_pred HHHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc-c-
Confidence 3456899999999999999999999999999873 347899999999999999999999999987522 2
Q ss_pred HHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCc
Q 006250 267 QDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANS 346 (654)
Q Consensus 267 r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 346 (654)
.++.++.+|... . .
T Consensus 87 --------~~~~l~~~L~~~-----~----~------------------------------------------------- 100 (280)
T 1oyz_A 87 --------CEDNVFNILNNM-----A----L------------------------------------------------- 100 (280)
T ss_dssp --------THHHHHHHHHHH-----H----H-------------------------------------------------
T ss_pred --------cchHHHHHHHHH-----H----h-------------------------------------------------
Confidence 234444444210 0 0
Q ss_pred chhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCC
Q 006250 347 SISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGN 426 (654)
Q Consensus 347 ~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn 426 (654)
..+++ .++..|++||+++..++
T Consensus 101 ------------------------------------------------------~d~~~----~vr~~a~~aL~~l~~~~ 122 (280)
T 1oyz_A 101 ------------------------------------------------------NDKSA----CVRATAIESTAQRCKKN 122 (280)
T ss_dssp ------------------------------------------------------HCSCH----HHHHHHHHHHHHHHHHC
T ss_pred ------------------------------------------------------cCCCH----HHHHHHHHHHHHHhccC
Confidence 01122 25678999999987655
Q ss_pred hHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhh
Q 006250 427 LSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLI 506 (654)
Q Consensus 427 ~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~ 506 (654)
+.. ....++.|..+|++++..|+..++++|.++.. ..+++.|++++++.++.++.
T Consensus 123 ~~~-----~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--------------------~~~~~~L~~~l~d~~~~vr~ 177 (280)
T 1oyz_A 123 PIY-----SPKIVEQSQITAFDKSTNVRRATAFAISVIND--------------------KATIPLLINLLKDPNGDVRN 177 (280)
T ss_dssp GGG-----HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------------------CCHHHHHHHHTCSSHHHHH
T ss_pred Ccc-----cHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHcCCCHHHHH
Confidence 322 23568899999999999999999999987642 11457888899998899999
Q ss_pred HHHHHHHHhhhcchhhhhccHHHHHHHhccCCHHHHHHHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhccCCcc
Q 006250 507 PSIRAIGNLARTFRATETRIIGPLVNLLDEREPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQM 586 (654)
Q Consensus 507 ~~~~alg~la~~~~~~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~ 586 (654)
.++++||.+... ...++++|+.+|++.++.|+.+|+++|+++.. ...++.|+.+|..++
T Consensus 178 ~a~~aL~~~~~~----~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~---------------~~~~~~L~~~l~d~~-- 236 (280)
T 1oyz_A 178 WAAFAININKYD----NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD---------------KRVLSVLCDELKKNT-- 236 (280)
T ss_dssp HHHHHHHHHTCC----CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC---------------GGGHHHHHHHHTSSS--
T ss_pred HHHHHHHhhccC----cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC---------------HhhHHHHHHHhcCcc--
Confidence 999999998532 13589999999999999999999999999851 246789999997644
Q ss_pred hHHHHHHHHHHHHhCCCchHHHHhhhhhHHHHhhhhhhhhhcCccHHhHHHHHHHHHH
Q 006250 587 IQIPALTLLCYIAIKQPESKTLAQEEVLIVLEWSFKQAHLVAEPSIEALLPEAKSTLA 644 (654)
Q Consensus 587 ~q~~Al~~L~~ia~~~~~~~~l~~~~~l~~l~~~~~~~~~~q~~~~~~l~~~a~~~l~ 644 (654)
++..|+.+|..+. + ..+++.|. ..++++...++..++...|+
T Consensus 237 vr~~a~~aL~~i~----~------~~~~~~L~------~~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 237 VYDDIIEAAGELG----D------KTLLPVLD------TMLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp CCHHHHHHHHHHC----C------GGGHHHHH------HHHTTSSCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcC----c------hhhhHHHH------HHHhcCCCcHHHHHHHHHhh
Confidence 6666888887762 1 25677776 44455555667666666553
No 41
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.48 E-value=4.2e-12 Score=142.89 Aligned_cols=328 Identities=13% Similarity=0.065 Sum_probs=222.5
Q ss_pred hHHHHcccccCC-CHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccC--CHHHHHHHHHHHHHhcCCc-c--
Q 006250 150 LIWEQIAILHTG-SMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEG--ELEGQENAARAIGLLGRDA-E-- 223 (654)
Q Consensus 150 ~v~~lV~lL~s~-~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~--~~~~q~~Aa~AL~nLa~~~-e-- 223 (654)
.|..|+.+|.+. -.+.|..|...|..++++ |+..|. ++|+|+|+..|+.+ |.+.-+.+..+|.++-... +
T Consensus 22 tI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~---y~~~Vg-~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~ 97 (651)
T 3grl_A 22 TIQKLCDRVASSTLLDDRRNAVRALKSLSKK---YRLEVG-IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEE 97 (651)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT---TTTHHH-HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC----
T ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHHHHH---hHHHhh-hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCccc
Confidence 455567888755 688999999999999964 666665 67999999999875 5788888999998876532 1
Q ss_pred ---------------hHHH-HHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChh-hHHHHHh-CCcHHHHHHhhcc
Q 006250 224 ---------------SVEQ-IVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPK-CQDHFAQ-NNIVRFLVSHLAF 285 (654)
Q Consensus 224 ---------------~~~~-iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~-~r~~i~~-~g~I~~LV~LL~~ 285 (654)
+.+. +.+.+.|+.|+.+|++.+..++..+...|..|+.+.++ .++.|.. .++|+.||.+|.+
T Consensus 98 ~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d 177 (651)
T 3grl_A 98 VEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLAD 177 (651)
T ss_dssp ----------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGC
T ss_pred ccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhC
Confidence 1223 34678999999999999999999999999999987777 8999996 4999999999974
Q ss_pred CchhhhhHHHHHhhccchhhhHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCc
Q 006250 286 ETVQEHSKYAIASKQNISSLHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTN 365 (654)
Q Consensus 286 ~~~~~~~~~al~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~ 365 (654)
..
T Consensus 178 ~r------------------------------------------------------------------------------ 179 (651)
T 3grl_A 178 SR------------------------------------------------------------------------------ 179 (651)
T ss_dssp SS------------------------------------------------------------------------------
T ss_pred ch------------------------------------------------------------------------------
Confidence 31
Q ss_pred ccccCCcccccccCCCCCCccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHh
Q 006250 366 AQQAQPDSHMYAMQPNHHNQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVL 445 (654)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~L 445 (654)
..++..|...|.+|+++|.+.||.++-.|+++.|..+
T Consensus 180 -------------------------------------------E~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~I 216 (651)
T 3grl_A 180 -------------------------------------------EVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDI 216 (651)
T ss_dssp -------------------------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred -------------------------------------------HHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHH
Confidence 0134457778888999999999999999999999999
Q ss_pred hccCCh----hHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchh
Q 006250 446 LEKGPE----DVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRA 521 (654)
Q Consensus 446 L~~~~~----~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~ 521 (654)
++.... .|...|.-.|.++... |+-.++ .|.
T Consensus 217 i~~Eg~~~Ggivv~DCL~ll~nLLr~---N~sNQ~-~Fr----------------------------------------- 251 (651)
T 3grl_A 217 ITEEGNSDGGIVVEDCLILLQNLLKN---NNSNQN-FFK----------------------------------------- 251 (651)
T ss_dssp HHHHTGGGSHHHHHHHHHHHHHHHTT---CHHHHH-HHH-----------------------------------------
T ss_pred HHhcCCCccchhHHHHHHHHHHHHhc---CHHHHH-HHH-----------------------------------------
Confidence 988654 6777888888777643 433333 122
Q ss_pred hhhccHHHHHHHhccCCHH------HHHH---HHHHHHhccccCCC--CCHHHHHHHHHCCCHHHHHHhhccCC--cchH
Q 006250 522 TETRIIGPLVNLLDEREPE------VIME---ATVALNKFATTENY--LSETHSKAIINAGGVKHLIQLVYFGE--QMIQ 588 (654)
Q Consensus 522 ~e~~~I~pLV~lL~~~~~~------v~~e---Aa~AL~~~a~~~n~--~~~~~~~~Iv~~ggi~~Lv~LL~~~~--~~~q 588 (654)
|++.||+|..+|+.+++. ...+ +...+.-|.++++. .+..|++++.+.|++++|++|+.++. ..++
T Consensus 252 -Et~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~ 330 (651)
T 3grl_A 252 -EGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADIL 330 (651)
T ss_dssp -HTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHH
T ss_pred -HcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHH
Confidence 233444444444322211 1111 11112222223221 13578999999999999999988653 3466
Q ss_pred HHHHHHHHHHHhCC-CchHHHHhhh-----hhHHHHhhhhhhhhhcCccHHhHHHHHHHHHHhhhcCC
Q 006250 589 IPALTLLCYIAIKQ-PESKTLAQEE-----VLIVLEWSFKQAHLVAEPSIEALLPEAKSTLATYQSRD 650 (654)
Q Consensus 589 ~~Al~~L~~ia~~~-~~~~~l~~~~-----~l~~l~~~~~~~~~~q~~~~~~l~~~a~~~l~~y~~~~ 650 (654)
..|+.++..++.+. .+++.+++.. ..|.+..... .++..+..-++-..|..-++-|+.+.
T Consensus 331 ~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~--~~~~~~~~~~lR~Aa~~cl~ay~~~N 396 (651)
T 3grl_A 331 TETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLM--SMVNERQPFVLRCAVLYCFQCFLYKN 396 (651)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHH--HHTCTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHH--HHhcccccHHHHHHHHHHHHHHHhCC
Confidence 77898888887544 4466666532 1122221111 12333333445566666666666543
No 42
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.48 E-value=8.7e-12 Score=140.38 Aligned_cols=326 Identities=16% Similarity=0.164 Sum_probs=223.6
Q ss_pred cccccCC--CHHHHHHHHHHHHHhccCCch-----------------hHHHH-HhcCCHHHHHHhhccCCHHHHHHHHHH
Q 006250 155 IAILHTG--SMEEKCDAAASLVSLARDNDR-----------------YGKLI-IEEGGVPPLLKLAYEGELEGQENAARA 214 (654)
Q Consensus 155 V~lL~s~--~~~~k~~Aa~aL~~La~~~~~-----------------~~~~I-~e~G~Ip~LV~LL~s~~~~~q~~Aa~A 214 (654)
+..|+.. |.+.-..+..+|.++...++. +.+.+ .+.+.|+.|+.+|++.+-.++..+...
T Consensus 66 i~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alql 145 (651)
T 3grl_A 66 IHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKL 145 (651)
T ss_dssp HHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHH
Confidence 7777643 666666677888776443221 22233 456899999999999999999999999
Q ss_pred HHHhcCC-cc-hHHHHHHc-CchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhh
Q 006250 215 IGLLGRD-AE-SVEQIVNA-GVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEH 291 (654)
Q Consensus 215 L~nLa~~-~e-~~~~iv~~-GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~ 291 (654)
|..|+.+ ++ .++.|... +|||.|+.+|++..+.+|..+...|.+|+.++++.|+.++-+|++++|+.+++.+...+
T Consensus 146 L~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~- 224 (651)
T 3grl_A 146 LTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSD- 224 (651)
T ss_dssp HHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGG-
T ss_pred HHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCc-
Confidence 9999976 33 67888865 99999999999999999999999999999999999999999999999999997532000
Q ss_pred hHHHHHhhccchhhhHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCC
Q 006250 292 SKYAIASKQNISSLHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQP 371 (654)
Q Consensus 292 ~~~al~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~ 371 (654)
.+
T Consensus 225 --------------------------------------------------------------Gg---------------- 226 (651)
T 3grl_A 225 --------------------------------------------------------------GG---------------- 226 (651)
T ss_dssp --------------------------------------------------------------SH----------------
T ss_pred --------------------------------------------------------------cc----------------
Confidence 00
Q ss_pred cccccccCCCCCCccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCCh
Q 006250 372 DSHMYAMQPNHHNQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPE 451 (654)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~ 451 (654)
-+..-|+..|.+|.++|+.||+.+.|.|.++.|+.||+.+++
T Consensus 227 --------------------------------------ivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~ 268 (651)
T 3grl_A 227 --------------------------------------IVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDE 268 (651)
T ss_dssp --------------------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSC
T ss_pred --------------------------------------hhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCcc
Confidence 123357888999999999999999999999999999987553
Q ss_pred h-----HHHHHHHHHHHHHhh--ccc-----ChHhhhhccCCCchHHHHHHHHHHHHhhhcC--cchhhHHHHHHHHhhh
Q 006250 452 D-----VKHFSAMALMEITAV--AEK-----NSDLRRSAFKPTSTAAKAVLEQLLHIVEKAD--SDLLIPSIRAIGNLAR 517 (654)
Q Consensus 452 ~-----v~~~aa~AL~~Iaa~--ae~-----~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~--~~l~~~~~~alg~la~ 517 (654)
+ .|..-.+++.+|-.. ... ++..+++.+ ..+++.+|++++-... ..++..++.++|.+.+
T Consensus 269 ~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~------~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~ir 342 (651)
T 3grl_A 269 NSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMF------QCGLLQQLCTILMATGVPADILTETINTVSEVIR 342 (651)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHH------HTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHH------HCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHh
Confidence 2 233222333333211 111 112222211 1236778999987653 5688999999999998
Q ss_pred cchhhhhc--------------cHHHHHHHhc-cCCHHHHHHHHHHHHhccccCCCCCHHHHHHHHHC------CC----
Q 006250 518 TFRATETR--------------IIGPLVNLLD-EREPEVIMEATVALNKFATTENYLSETHSKAIINA------GG---- 572 (654)
Q Consensus 518 ~~~~~e~~--------------~I~pLV~lL~-~~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~------gg---- 572 (654)
.....+.. +|..|+.++. ...++++.+|+..+.-|..+ +.+.+..|+.. ++
T Consensus 343 gN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~----N~~~Q~~i~~~llp~~~~~~~~~ 418 (651)
T 3grl_A 343 GCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYK----NQKGQGEIVSTLLPSTIDATGNT 418 (651)
T ss_dssp TCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTT----CHHHHHHHHHTTSSCCCCCTTSS
T ss_pred CCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhC----CHHHHHHHHHhcCCcccccCCCC
Confidence 66543321 2333444453 34688999999999888632 34556666643 11
Q ss_pred H---HHHHHhhccCCcchHHHHHHHHHHHHhCCCchHH
Q 006250 573 V---KHLIQLVYFGEQMIQIPALTLLCYIAIKQPESKT 607 (654)
Q Consensus 573 i---~~Lv~LL~~~~~~~q~~Al~~L~~ia~~~~~~~~ 607 (654)
+ ..|+.-+-+.|+...--|...|.++..+.+..++
T Consensus 419 ~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n~~~K~ 456 (651)
T 3grl_A 419 VSAGQLLCGGLFSTDSLSNWCAAVALAHALQENATQKE 456 (651)
T ss_dssp SCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCcchhhhhhhccCchHHHHHHHHHHHHHHcCCHHHHH
Confidence 1 1244445456662222377778888555554443
No 43
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.38 E-value=4.6e-11 Score=136.13 Aligned_cols=308 Identities=15% Similarity=0.151 Sum_probs=201.7
Q ss_pred hHHHHcccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCC-cchHHHH
Q 006250 150 LIWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRD-AESVEQI 228 (654)
Q Consensus 150 ~v~~lV~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~-~e~~~~i 228 (654)
.+..+.+.|+++++..|..|..+|+++.. ++.... .+|++.++|.+.++.+++.|+.+|.++... ++ .+
T Consensus 87 ~~n~l~kdL~~~n~~ir~~AL~~L~~i~~--~~~~~~-----l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~---~~ 156 (591)
T 2vgl_B 87 AVNSFVKDCEDPNPLIRALAVRTMGCIRV--DKITEY-----LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ---MV 156 (591)
T ss_dssp THHHHGGGSSSSSHHHHHHHHHHHHTCCS--GGGHHH-----HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC---CH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCCh--HHHHHH-----HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh---hc
Confidence 35556888999999999999999999862 443333 468899999999999999999999999864 44 23
Q ss_pred HHcCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHH
Q 006250 229 VNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSA 308 (654)
Q Consensus 229 v~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l 308 (654)
.+.+.+|.|.++|.++++.|+..|+++|.+++.++++.+..-...+.++.|+..|...+ .|.-.. -+..+
T Consensus 157 ~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~-----~~~q~~-----il~~l 226 (591)
T 2vgl_B 157 EDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECT-----EWGQIF-----ILDCL 226 (591)
T ss_dssp HHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCC-----HHHHHH-----HHHHH
T ss_pred ccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCC-----chHHHH-----HHHHH
Confidence 34678999999999999999999999999999866533100011134666777665332 231111 11111
Q ss_pred HHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCccch
Q 006250 309 LVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQD 388 (654)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (654)
. .. +..++.....++.. +..
T Consensus 227 ~----~l-------------------------~~~~~~~~~~~l~~-------------------------------l~~ 246 (591)
T 2vgl_B 227 S----NY-------------------------NPKDDREAQSICER-------------------------------VTP 246 (591)
T ss_dssp H----TS-------------------------CCCSHHHHHHHHHH-------------------------------HTT
T ss_pred H----Hh-------------------------CCCChHHHHHHHHH-------------------------------HHH
Confidence 1 00 00001111111110 000
Q ss_pred hhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcC---ChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHH
Q 006250 389 QQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKG---NLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEIT 465 (654)
Q Consensus 389 ~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~g---n~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Ia 465 (654)
. ..+.++. +.-.|++++..+..+ +++..+.+ -.+..++|+.|+. ++.++|+-+..+|..|.
T Consensus 247 -------~---l~~~~~~----V~~ea~~~i~~l~~~~~~~~~~~~~~-~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~ 310 (591)
T 2vgl_B 247 -------R---LSHANSA----VVLSAVKVLMKFLELLPKDSDYYNML-LKKLAPPLVTLLS-GEPEVQYVALRNINLIV 310 (591)
T ss_dssp -------C---SCSSTTH----HHHHHHHHHHHSCCSCCBTTBSHHHH-HHHTHHHHHHHTT-SCHHHHHHHHHHHHHHH
T ss_pred -------H---HcCCChH----HHHHHHHHHHHHhhccCCCHHHHHHH-HHHHHHHHHHHhc-CCccHHHHHHHHHHHHH
Confidence 0 1123443 567899999998742 33333322 2355677887775 78999999999999997
Q ss_pred hhccc---------------ChHhhhhccC-----CCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhhhhc
Q 006250 466 AVAEK---------------NSDLRRSAFK-----PTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRATETR 525 (654)
Q Consensus 466 a~ae~---------------~~~lrr~a~~-----~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~e~~ 525 (654)
....+ ...+|+.++. .+......+++.|...+++.+++++..++++||.++..|......
T Consensus 311 ~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~~ 390 (591)
T 2vgl_B 311 QKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAER 390 (591)
T ss_dssp HHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHHH
Confidence 53211 1223332211 122224567788888888888999999999999999988755456
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHhcc
Q 006250 526 IIGPLVNLLDEREPEVIMEATVALNKFA 553 (654)
Q Consensus 526 ~I~pLV~lL~~~~~~v~~eAa~AL~~~a 553 (654)
.++.|+++|+....++..++..+|.++.
T Consensus 391 ~v~~Ll~ll~~~~~~v~~e~i~~l~~ii 418 (591)
T 2vgl_B 391 CVSTLLDLIQTKVNYVVQEAIVVIRDIF 418 (591)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 7888888888877888888877777664
No 44
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.38 E-value=1.1e-11 Score=146.68 Aligned_cols=312 Identities=12% Similarity=0.091 Sum_probs=203.4
Q ss_pred HHHHcccccCCCHHHHHHHHHHHHHhccCCchhHHH-H---HhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcchHH
Q 006250 151 IWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKL-I---IEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVE 226 (654)
Q Consensus 151 v~~lV~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~-I---~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~ 226 (654)
+-.++..+.+++...|..|..+|+.++.+.+..-.. . .-.+.+|.|++++++.++.++..|+++|.++........
T Consensus 130 l~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~ 209 (852)
T 4fdd_A 130 LPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQAL 209 (852)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHH
Confidence 455688889999999999999999998542221110 0 013468899999999899999999999998876533221
Q ss_pred HHHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhh
Q 006250 227 QIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLH 306 (654)
Q Consensus 227 ~iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~ 306 (654)
.-.-...++.|.+++.+++++++..++++|.+|+...++.-....+ +.++.++.++++..
T Consensus 210 ~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~------------------- 269 (852)
T 4fdd_A 210 MLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQD------------------- 269 (852)
T ss_dssp HTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHHTCSS-------------------
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHccCCc-------------------
Confidence 1112357889999999999999999999999999865543111111 34555555554321
Q ss_pred HHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCcc
Q 006250 307 SALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQH 386 (654)
Q Consensus 307 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (654)
T Consensus 270 -------------------------------------------------------------------------------- 269 (852)
T 4fdd_A 270 -------------------------------------------------------------------------------- 269 (852)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHh---hCcHHHHHHhh-----------cc----
Q 006250 387 QDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTE---SRALLCFAVLL-----------EK---- 448 (654)
Q Consensus 387 ~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e---~gaL~~L~~LL-----------~~---- 448 (654)
+ .++..|+..+..++... .++.... ...+|.+...+ .+
T Consensus 270 ------------------~----~vr~~a~e~l~~l~~~~--~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed 325 (852)
T 4fdd_A 270 ------------------E----NVALEACEFWLTLAEQP--ICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGG 325 (852)
T ss_dssp ------------------H----HHHHHHHHHHHHHTTST--THHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC-----
T ss_pred ------------------H----HHHHHHHHHHHHHhcch--hHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccc
Confidence 0 11222233333332211 0111111 02233333333 11
Q ss_pred -------CChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchh
Q 006250 449 -------GPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRA 521 (654)
Q Consensus 449 -------~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~ 521 (654)
..-.+++.++.+|..++..... .....+++.+...+.+.++.++..++++||+++.....
T Consensus 326 ~~~dd~~~~~~vr~~a~~~L~~la~~~~~-------------~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~ 392 (852)
T 4fdd_A 326 SGGDDTISDWNLRKCSAAALDVLANVYRD-------------ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ 392 (852)
T ss_dssp -------CCCCHHHHHHHHHHHHHHHHGG-------------GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHH
T ss_pred cccccccccchHHHHHHHHHHHHHHhccH-------------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchH
Confidence 2235799999999988754331 11235777888888888899999999999999975543
Q ss_pred h----hhccHHHHHHHhccCCHHHHHHHHHHHHhccccCC-CCCHHHHHHHHHCCCHHHHHHhhccCCcchHHHHHHHHH
Q 006250 522 T----ETRIIGPLVNLLDEREPEVIMEATVALNKFATTEN-YLSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLC 596 (654)
Q Consensus 522 ~----e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a~~~n-~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~ 596 (654)
. -..++|.|+.+|++.++.|+..|+|+|++++..-. ... ..++ .+.++.|++.+..+++.++..|+.+|.
T Consensus 393 ~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~---~~~~--~~ll~~L~~~L~d~~~~vr~~a~~aL~ 467 (852)
T 4fdd_A 393 GMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPP---DTYL--KPLMTELLKRILDSNKRVQEAACSAFA 467 (852)
T ss_dssp HHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCT---TTTH--HHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchH---HHHH--HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 1 23578999999999999999999999999973210 000 0111 235678888888777778999999999
Q ss_pred HHHhCCCc
Q 006250 597 YIAIKQPE 604 (654)
Q Consensus 597 ~ia~~~~~ 604 (654)
+++.+.+.
T Consensus 468 ~l~~~~~~ 475 (852)
T 4fdd_A 468 TLEEEACT 475 (852)
T ss_dssp HHHHHHGG
T ss_pred HHHHHhhH
Confidence 99765443
No 45
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.37 E-value=3.3e-11 Score=118.03 Aligned_cols=185 Identities=22% Similarity=0.200 Sum_probs=151.9
Q ss_pred cCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcchHHHHHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHH
Q 006250 190 EGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDH 269 (654)
Q Consensus 190 ~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~~iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~ 269 (654)
.+.++.|+.+|+++++.++..|+++|..+.. ..++|.|+++|.++++.++..++++|+.+.. +
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--~----- 80 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--E----- 80 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--G-----
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--H-----
Confidence 5689999999999999999999999998764 3689999999999999999999999999864 1
Q ss_pred HHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchh
Q 006250 270 FAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSIS 349 (654)
Q Consensus 270 i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~ 349 (654)
++++.|+.+|.++
T Consensus 81 ----~~~~~L~~~l~~~--------------------------------------------------------------- 93 (211)
T 3ltm_A 81 ----RAVEPLIKALKDE--------------------------------------------------------------- 93 (211)
T ss_dssp ----GGHHHHHHHTTCS---------------------------------------------------------------
T ss_pred ----HHHHHHHHHHcCC---------------------------------------------------------------
Confidence 3667777766432
Q ss_pred hHHhhhhhhcccCCCcccccCCcccccccCCCCCCccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHH
Q 006250 350 NVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSI 429 (654)
Q Consensus 350 ~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~ 429 (654)
|| .++..|+++|+++. +
T Consensus 94 ------------------------------------------------------~~----~vr~~a~~aL~~~~--~--- 110 (211)
T 3ltm_A 94 ------------------------------------------------------DG----WVRQSAAVALGQIG--D--- 110 (211)
T ss_dssp ------------------------------------------------------SH----HHHHHHHHHHHHHC--C---
T ss_pred ------------------------------------------------------CH----HHHHHHHHHHHHhC--c---
Confidence 12 24567888888873 2
Q ss_pred HHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHH
Q 006250 430 CRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSI 509 (654)
Q Consensus 430 ~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~ 509 (654)
..+++.|..+|++++..|+..++++|.++.. ...++.|.+++++.++.++..++
T Consensus 111 ------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------------------~~~~~~L~~~l~d~~~~vr~~a~ 164 (211)
T 3ltm_A 111 ------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------------------ERAVEPLIKALKDEDGWVRQSAA 164 (211)
T ss_dssp ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------------------GGGHHHHHHHTTCSSHHHHHHHH
T ss_pred ------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHcCCCHHHHHHHH
Confidence 2588999999999999999999999988731 11357788889888899999999
Q ss_pred HHHHHhhhcchhhhhccHHHHHHHhccCCHHHHHHHHHHHHhcc
Q 006250 510 RAIGNLARTFRATETRIIGPLVNLLDEREPEVIMEATVALNKFA 553 (654)
Q Consensus 510 ~alg~la~~~~~~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a 553 (654)
.+|+.+.. ..+++.|.++|++.++.|+..|..+|.++.
T Consensus 165 ~aL~~~~~------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 165 DALGEIGG------ERVRAAMEKLAETGTGFARKVAVNYLETHK 202 (211)
T ss_dssp HHHHHHCS------HHHHHHHHHHHHHCCHHHHHHHHHHHHC--
T ss_pred HHHHHhCc------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 99999863 458999999999999999999999999986
No 46
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.36 E-value=8.3e-11 Score=131.67 Aligned_cols=334 Identities=13% Similarity=0.086 Sum_probs=224.0
Q ss_pred cccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCC--cchHHHHHHcC
Q 006250 155 IAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRD--AESVEQIVNAG 232 (654)
Q Consensus 155 V~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~--~e~~~~iv~~G 232 (654)
..++++.+..+|..|+.+|+.++...+ ........+|.|+.++++.++.++..|+++|..++.. ++.+....-..
T Consensus 248 ~~~~~d~~~~vR~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~ 324 (588)
T 1b3u_A 248 RQAAEDKSWRVRYMVADKFTELQKAVG---PEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQ 324 (588)
T ss_dssp HHHHTCSSHHHHHHHHHTHHHHHHHHC---HHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHT
T ss_pred HHHccCCCHHHHHHHHHHHHHHHHHhC---cccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHH
Confidence 455677788899999999999874311 1123345789999999998999999999999999864 23232233456
Q ss_pred chHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHHHHhh
Q 006250 233 VCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVAS 312 (654)
Q Consensus 233 aIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~~~~ 312 (654)
.+|.+..++++++..++..++++|+.++..-.. +.. ....+|.|..+|+++. ..
T Consensus 325 l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~--~~~-~~~l~p~l~~~l~d~~--~~--------------------- 378 (588)
T 1b3u_A 325 ILPCIKELVSDANQHVKSALASVIMGLSPILGK--DNT-IEHLLPLFLAQLKDEC--PE--------------------- 378 (588)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH--HHH-HHHTHHHHHHHHTCSC--HH---------------------
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH--hHH-HHHHHHHHHHHhCCCc--hH---------------------
Confidence 789999999999999999999999999862111 111 1235566666665432 11
Q ss_pred cCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCccchhhhh
Q 006250 313 NSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVL 392 (654)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 392 (654)
T Consensus 379 -------------------------------------------------------------------------------- 378 (588)
T 1b3u_A 379 -------------------------------------------------------------------------------- 378 (588)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccCh
Q 006250 393 GGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNS 472 (654)
Q Consensus 393 ~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~ 472 (654)
++..|..+|+.+....... ......+|.|..++++.+..+|..++.+|..++..-...
T Consensus 379 ------------------Vr~~a~~~l~~l~~~~~~~---~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~- 436 (588)
T 1b3u_A 379 ------------------VRLNIISNLDCVNEVIGIR---QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE- 436 (588)
T ss_dssp ------------------HHHHHHTTCHHHHHHSCHH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG-
T ss_pred ------------------HHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH-
Confidence 1222333333332210000 011246778888888888899999999999887432211
Q ss_pred HhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhh--hhccHHHHHHHhccCCHHHHHHHHHHHH
Q 006250 473 DLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRAT--ETRIIGPLVNLLDEREPEVIMEATVALN 550 (654)
Q Consensus 473 ~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~--e~~~I~pLV~lL~~~~~~v~~eAa~AL~ 550 (654)
.|. ..+++.+.+++++.+..++..++.+++.++..+... ...++|.|++++++.+..++..++++++
T Consensus 437 -----~~~------~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~ 505 (588)
T 1b3u_A 437 -----FFD------EKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCIN 505 (588)
T ss_dssp -----GCC------HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHH
T ss_pred -----HHH------HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 111 346788888898888889999999999999876543 2358899999999899999999999999
Q ss_pred hccccCCCCCHHHHHHHHHCCCHHHHHHhhccCCcchHHHHHHHHHHHHhCCCchHHHHhhhhhHHHHhhhhhhhhhcCc
Q 006250 551 KFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIAIKQPESKTLAQEEVLIVLEWSFKQAHLVAEP 630 (654)
Q Consensus 551 ~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~ia~~~~~~~~l~~~~~l~~l~~~~~~~~~~q~~ 630 (654)
.++..- . ....-...++.|++++...++.++..++.+|..++...+. ......++|.|.. .. .-.++
T Consensus 506 ~l~~~~-----~--~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~--~~~~~~~~p~l~~-l~---~d~d~ 572 (588)
T 1b3u_A 506 VLSEVC-----G--QDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN--STLQSEVKPILEK-LT---QDQDV 572 (588)
T ss_dssp HHHHHH-----H--HHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH--HHHHHHHHHHHHH-HT---TCSSH
T ss_pred HHHHhc-----C--HHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhch--hhhHHHHHHHHHH-Hc---CCCch
Confidence 986210 0 1112234678899999877777888899999999766554 2333566777763 11 11245
Q ss_pred cHHhHHHHHHHHH
Q 006250 631 SIEALLPEAKSTL 643 (654)
Q Consensus 631 ~~~~l~~~a~~~l 643 (654)
.+.....+|...+
T Consensus 573 ~vr~~a~~al~~l 585 (588)
T 1b3u_A 573 DVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHh
Confidence 5556666665544
No 47
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.35 E-value=4.5e-11 Score=116.11 Aligned_cols=186 Identities=22% Similarity=0.204 Sum_probs=152.3
Q ss_pred hcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcchHHHHHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHH
Q 006250 189 EEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQD 268 (654)
Q Consensus 189 e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~~iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~ 268 (654)
..+..+.++++|+++++.++..|+++|..+.. .++++.|+++|.++++.++..++++|+.+.. +
T Consensus 12 ~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--~---- 75 (201)
T 3ltj_A 12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--E---- 75 (201)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G----
T ss_pred CCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--H----
Confidence 34678999999999999999999999998764 3579999999999999999999999998864 2
Q ss_pred HHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcch
Q 006250 269 HFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSI 348 (654)
Q Consensus 269 ~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i 348 (654)
.+++.|+.+|.++
T Consensus 76 -----~~~~~L~~~l~d~-------------------------------------------------------------- 88 (201)
T 3ltj_A 76 -----RAVEPLIKALKDE-------------------------------------------------------------- 88 (201)
T ss_dssp -----GGHHHHHHHTTCS--------------------------------------------------------------
T ss_pred -----HHHHHHHHHHcCC--------------------------------------------------------------
Confidence 3667777766432
Q ss_pred hhHHhhhhhhcccCCCcccccCCcccccccCCCCCCccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChH
Q 006250 349 SNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLS 428 (654)
Q Consensus 349 ~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~ 428 (654)
|| .++..|+++|+++. +
T Consensus 89 -------------------------------------------------------~~----~vr~~a~~aL~~~~--~-- 105 (201)
T 3ltj_A 89 -------------------------------------------------------DG----WVRQSAAVALGQIG--D-- 105 (201)
T ss_dssp -------------------------------------------------------SH----HHHHHHHHHHHHHC--C--
T ss_pred -------------------------------------------------------CH----HHHHHHHHHHHHhC--c--
Confidence 12 24567888888873 3
Q ss_pred HHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHH
Q 006250 429 ICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPS 508 (654)
Q Consensus 429 ~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~ 508 (654)
..+++.|..+|++++..|+..++++|.++.. ...++.|.++++++++.++..+
T Consensus 106 -------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------------------~~~~~~L~~~l~d~~~~vr~~A 158 (201)
T 3ltj_A 106 -------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------------------ERAVEPLIKALKDEDGWVRQSA 158 (201)
T ss_dssp -------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--------------------GGGHHHHHHHTTCSSHHHHHHH
T ss_pred -------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------------------HHHHHHHHHHHcCCCHHHHHHH
Confidence 2578889999999999999999999988741 1245778888988889999999
Q ss_pred HHHHHHhhhcchhhhhccHHHHHHHhccCCHHHHHHHHHHHHhcc
Q 006250 509 IRAIGNLARTFRATETRIIGPLVNLLDEREPEVIMEATVALNKFA 553 (654)
Q Consensus 509 ~~alg~la~~~~~~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a 553 (654)
+++||.+.. ...++.|.++|++.++.|+..|..+|.++.
T Consensus 159 ~~aL~~~~~------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 159 ADALGEIGG------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp HHHHHHHCS------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred HHHHHHhCc------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 999999852 358999999999999999999999999974
No 48
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.34 E-value=7.4e-10 Score=126.14 Aligned_cols=334 Identities=14% Similarity=0.155 Sum_probs=224.8
Q ss_pred hHHHHcccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcc-h----
Q 006250 150 LIWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAE-S---- 224 (654)
Q Consensus 150 ~v~~lV~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e-~---- 224 (654)
++-.+.++|.+.++.+|..|+.+|.++...+++ .+.+.+.+|.|..+|.+.++.++.+|+++|..++.+.. .
T Consensus 122 l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~ 198 (591)
T 2vgl_B 122 LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLD 198 (591)
T ss_dssp HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCC
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchh
Confidence 344468889999999999999999999876554 23345789999999999999999999999999997532 1
Q ss_pred -----HHHHHH----------------------------cCchHHHHHhhcCCChhHHHHHHHHHHHHhc---CChhhHH
Q 006250 225 -----VEQIVN----------------------------AGVCSTFAKNLKDGHMKVQSVVAWAVSELAS---NHPKCQD 268 (654)
Q Consensus 225 -----~~~iv~----------------------------~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~---~~~~~r~ 268 (654)
-..++. ...++.+..+|++.++.|+..|++++.++.. .+++...
T Consensus 199 l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~ 278 (591)
T 2vgl_B 199 LNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYN 278 (591)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHH
T ss_pred ccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHH
Confidence 111221 2456777778888888999999999999874 2344444
Q ss_pred HHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcch
Q 006250 269 HFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSI 348 (654)
Q Consensus 269 ~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i 348 (654)
.+. ..+.++|+.+++++. ..+|+... .+..++..... . +
T Consensus 279 ~~~-~~~~~~L~~L~~~d~---~vr~~aL~-----~l~~i~~~~p~--------~----~-------------------- 317 (591)
T 2vgl_B 279 MLL-KKLAPPLVTLLSGEP---EVQYVALR-----NINLIVQKRPE--------I----L-------------------- 317 (591)
T ss_dssp HHH-HHTHHHHHHHTTSCH---HHHHHHHH-----HHHHHHHHCCS--------T----T--------------------
T ss_pred HHH-HHHHHHHHHHhcCCc---cHHHHHHH-----HHHHHHHhChH--------H----H--------------------
Confidence 333 246688888876332 34443221 22222221100 0 0
Q ss_pred hhHHhhhhhhcccCCCcccccCCcccccccCCCCCCccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChH
Q 006250 349 SNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLS 428 (654)
Q Consensus 349 ~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~ 428 (654)
. + ++..+ .+ . ..|| ..++..|+..|.+++. ..
T Consensus 318 ----------------------~--------~----~~~~~------~~--~-~~d~---~~Ir~~al~~L~~l~~--~~ 349 (591)
T 2vgl_B 318 ----------------------K--------Q----EIKVF------FV--K-YNDP---IYVKLEKLDIMIRLAS--QA 349 (591)
T ss_dssp ----------------------T--------T----CTTTT------SC--C-TTSC---HHHHHHHHHHHHHTCC--SS
T ss_pred ----------------------H--------H----HHHhh------ee--c-cCCh---HHHHHHHHHHHHHHCC--hh
Confidence 0 0 00000 01 1 1233 2477889999999864 44
Q ss_pred HHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHH
Q 006250 429 ICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPS 508 (654)
Q Consensus 429 ~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~ 508 (654)
|.+. .+.-|...+++.+.++|.+++++|..++.. .+ +....+++.|+++++..++.+...+
T Consensus 350 nv~~-----iv~~L~~~l~~~d~~~r~~~v~aI~~la~~---~~-----------~~~~~~v~~Ll~ll~~~~~~v~~e~ 410 (591)
T 2vgl_B 350 NIAQ-----VLAELKEYATEVDVDFVRKAVRAIGRCAIK---VE-----------QSAERCVSTLLDLIQTKVNYVVQEA 410 (591)
T ss_dssp THHH-----HHHHHHHHTTSSCHHHHHHHHHHHHHHHTT---CH-----------HHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred hHHH-----HHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---Ch-----------hHHHHHHHHHHHHHcccchHHHHHH
Confidence 4443 455577788899999999999999998732 11 2345688999999998888888888
Q ss_pred HHHHHHhhhcchhhhhccHHHHHHHhc-cCCHHHHHHHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhccCCcch
Q 006250 509 IRAIGNLARTFRATETRIIGPLVNLLD-EREPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMI 587 (654)
Q Consensus 509 ~~alg~la~~~~~~e~~~I~pLV~lL~-~~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~ 587 (654)
+.+++.+.+.++.....+++.|++.|+ ..+++++..++|.|+.|+..- .+... .++.+++-+...++.+
T Consensus 411 i~~l~~ii~~~p~~~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~-----~~~~~-----~l~~l~~~~~~~~~~v 480 (591)
T 2vgl_B 411 IVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERI-----DNADE-----LLESFLEGFHDESTQV 480 (591)
T ss_dssp HHHHHHHHHHSCSSCCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTC-----TTHHH-----HHHHHSTTCSSSCHHH
T ss_pred HHHHHHHHHHCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccc-----cCHHH-----HHHHHHHhhccCCHHH
Confidence 999999988776655678999999996 567889999999999996321 11111 1233333222234457
Q ss_pred HHHHHHHHHHHHhCCCc
Q 006250 588 QIPALTLLCYIAIKQPE 604 (654)
Q Consensus 588 q~~Al~~L~~ia~~~~~ 604 (654)
|..++.++..+..+.|.
T Consensus 481 r~~~l~a~~Kl~~~~p~ 497 (591)
T 2vgl_B 481 QLTLLTAIVKLFLKKPS 497 (591)
T ss_dssp HHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHhcCch
Confidence 88889999988776664
No 49
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.33 E-value=1.6e-10 Score=129.29 Aligned_cols=364 Identities=13% Similarity=0.134 Sum_probs=212.5
Q ss_pred cccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcchHHHHHHcCch
Q 006250 155 IAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIVNAGVC 234 (654)
Q Consensus 155 V~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~~iv~~GaI 234 (654)
..+.++++...|..|+..|..++..-+.. + ....+|.|..++++.++.++..|+.+|+.++..-... ......+
T Consensus 132 ~~l~~~~~~~~R~~a~~~l~~~~~~~~~~---~-~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~ 205 (588)
T 1b3u_A 132 KRLAGGDWFTSRTSACGLFSVCYPRVSSA---V-KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEII 205 (588)
T ss_dssp HHHHTCSSHHHHHHHGGGHHHHTTTSCHH---H-HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHH
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHhcCHH---H-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH--hHHHHHH
Confidence 34445667788888888888887442221 1 2345778888888888888888888888888653221 2235678
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHHHHhhcC
Q 006250 235 STFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVASNS 314 (654)
Q Consensus 235 p~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~~~~~~ 314 (654)
|.|..++++++..++..|+.+|+.++...+. + ......+|.+..++.+.... .+.+... .+..+......
T Consensus 206 ~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~~~~~l~~~~~d~~~~--vR~~a~~-----~l~~l~~~~~~ 275 (588)
T 1b3u_A 206 PMFSNLASDEQDSVRLLAVEACVNIAQLLPQ--E-DLEALVMPTLRQAAEDKSWR--VRYMVAD-----KFTELQKAVGP 275 (588)
T ss_dssp HHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH--H-HHHHHTHHHHHHHHTCSSHH--HHHHHHH-----THHHHHHHHCH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH--H-HHHHHHHHHHHHHccCCCHH--HHHHHHH-----HHHHHHHHhCc
Confidence 8888888888888888888888888763322 1 12234678888888766421 1221111 12222111000
Q ss_pred CCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCccchhhhhcC
Q 006250 315 QNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVLGG 394 (654)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 394 (654)
......+ +|.+...+
T Consensus 276 ------------------------------~~~~~~l-------------------------------~~~l~~~l---- 290 (588)
T 1b3u_A 276 ------------------------------EITKTDL-------------------------------VPAFQNLM---- 290 (588)
T ss_dssp ------------------------------HHHHHTH-------------------------------HHHHHHHH----
T ss_pred ------------------------------ccchhHH-------------------------------HHHHHHHh----
Confidence 0000000 00111110
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHH-HHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhhc-----
Q 006250 395 TSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICR-NLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVA----- 468 (654)
Q Consensus 395 ~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~-~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~a----- 468 (654)
..+++. ++..|+.+|+.++.+...... ...-...+|.+..++++.+..||..++++|.+++..-
T Consensus 291 ------~d~~~~----vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~ 360 (588)
T 1b3u_A 291 ------KDCEAE----VRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNT 360 (588)
T ss_dssp ------TCSSHH----HHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHH
T ss_pred ------CCCcHH----HHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHH
Confidence 123343 556788888888764322110 0122345667777777777777777777776664311
Q ss_pred -------------ccChHhhhhccCCCch---------HHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhh--hh
Q 006250 469 -------------EKNSDLRRSAFKPTST---------AAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRAT--ET 524 (654)
Q Consensus 469 -------------e~~~~lrr~a~~~~s~---------~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~--e~ 524 (654)
+.++++|..++..-.. ....+++.|.+++++.+..++..++.+|+.++..+... ..
T Consensus 361 ~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~ 440 (588)
T 1b3u_A 361 IEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDE 440 (588)
T ss_dssp HHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCH
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHH
Confidence 1123444333322111 12346677777777777788888899999888754432 12
Q ss_pred ccHHHHHHHhccCCHHHHHHHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhccCCcchHHHHHHHHHHHHhCCCc
Q 006250 525 RIIGPLVNLLDEREPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIAIKQPE 604 (654)
Q Consensus 525 ~~I~pLV~lL~~~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~ia~~~~~ 604 (654)
.++|.++.+|.+.+..|+..|+.+|++++..- ..+ ..-...++.|+.++...+..+...++.++..++...+.
T Consensus 441 ~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~---~~~----~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~ 513 (588)
T 1b3u_A 441 KLNSLCMAWLVDHVYAIREAATSNLKKLVEKF---GKE----WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQ 513 (588)
T ss_dssp HHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH---CHH----HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh---Cch----hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCH
Confidence 47888899999999999999999999886321 111 11234567777777655555666688888887654332
Q ss_pred hHHHHhhhhhHHHH
Q 006250 605 SKTLAQEEVLIVLE 618 (654)
Q Consensus 605 ~~~l~~~~~l~~l~ 618 (654)
. .....++|.|.
T Consensus 514 ~--~~~~~~~~~l~ 525 (588)
T 1b3u_A 514 D--ITTKHMLPTVL 525 (588)
T ss_dssp H--HHHHHTHHHHH
T ss_pred H--HHHHHHHHHHH
Confidence 1 12244556554
No 50
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.26 E-value=1.5e-10 Score=136.91 Aligned_cols=332 Identities=14% Similarity=0.077 Sum_probs=215.8
Q ss_pred hhhhHHHHcccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCc-chH
Q 006250 147 ILCLIWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDA-ESV 225 (654)
Q Consensus 147 i~~~v~~lV~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~-e~~ 225 (654)
+..++..+++.+++.++.+|..|+.+|..+....+..... .-.+.++.|+.++.++++.++..|+++|.+|+... +.-
T Consensus 172 ~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~-~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~ 250 (852)
T 4fdd_A 172 LNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALML-HIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRL 250 (852)
T ss_dssp HHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHT-SHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHH
Confidence 3445555688999999999999999999887543321111 11256889999999999999999999999998642 211
Q ss_pred HHHHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHh--CCcHHHHHHhhccCchhhhhHHHHHhhccch
Q 006250 226 EQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQ--NNIVRFLVSHLAFETVQEHSKYAIASKQNIS 303 (654)
Q Consensus 226 ~~iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~--~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~ 303 (654)
...+ .+.++.+++++++.+++++..|++.+..++. .+..+..+.. ...+|.|+..+.... ++..
T Consensus 251 ~~~l-~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~-~~~~~~~~~~~~~~l~p~ll~~l~~~e--~d~~---------- 316 (852)
T 4fdd_A 251 LPHM-HNIVEYMLQRTQDQDENVALEACEFWLTLAE-QPICKDVLVRHLPKLIPVLVNGMKYSD--IDII---------- 316 (852)
T ss_dssp GGGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTT-STTHHHHHTTTHHHHHHHHHHHTSCCH--HHHH----------
T ss_pred HHHH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHHHHHHHHHcCCcH--hHHH----------
Confidence 1111 2478889999999999999999999999997 3344443321 123455555553321 1111
Q ss_pred hhhHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCC
Q 006250 304 SLHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHH 383 (654)
Q Consensus 304 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (654)
|....... |++ + +
T Consensus 317 ------~~~~d~~e------------d~~-----------~-----------------------------------d--- 329 (852)
T 4fdd_A 317 ------LLKGDVEG------------GSG-----------G-----------------------------------D--- 329 (852)
T ss_dssp ------HHHC----------------------------------------------------------------------
T ss_pred ------HhcCCccc------------ccc-----------c-----------------------------------c---
Confidence 11000000 000 0 0
Q ss_pred CccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHH
Q 006250 384 NQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALME 463 (654)
Q Consensus 384 ~~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~ 463 (654)
.+..+. .++..|+.+|..++....+ .+. ...++.+..++++.+..+|..|+++|..
T Consensus 330 ----------------d~~~~~----~vr~~a~~~L~~la~~~~~---~~~-~~l~~~l~~~l~~~~~~~R~aa~~alg~ 385 (852)
T 4fdd_A 330 ----------------DTISDW----NLRKCSAAALDVLANVYRD---ELL-PHILPLLKELLFHHEWVVKESGILVLGA 385 (852)
T ss_dssp -------------------CCC----CHHHHHHHHHHHHHHHHGG---GGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred ----------------cccccc----hHHHHHHHHHHHHHHhccH---HHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 000000 1456789999999874322 122 2467788888999999999999999999
Q ss_pred HHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhh-----hhccHHHHHHHhccCC
Q 006250 464 ITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRAT-----ETRIIGPLVNLLDERE 538 (654)
Q Consensus 464 Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~-----e~~~I~pLV~lL~~~~ 538 (654)
|+.+... .+. +-...+++.|+..+++.++.++..++++||.++..+... -..+++.|++.|.+.+
T Consensus 386 i~~~~~~--~~~--------~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~ 455 (852)
T 4fdd_A 386 IAEGCMQ--GMI--------PYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSN 455 (852)
T ss_dssp TTTTTHH--HHG--------GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSS
T ss_pred HHhcchH--HHH--------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCC
Confidence 9865432 111 233567889999999888999999999999999855321 1257899999998899
Q ss_pred HHHHHHHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhccCCcchHHHHHHHHHHHH
Q 006250 539 PEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIA 599 (654)
Q Consensus 539 ~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~ia 599 (654)
+.|+..|+|||.+++......-..+. .+-++.|+.++...+......++.++..++
T Consensus 456 ~~vr~~a~~aL~~l~~~~~~~l~~~l-----~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~ 511 (852)
T 4fdd_A 456 KRVQEAACSAFATLEEEACTELVPYL-----AYILDTLVFAFSKYQHKNLLILYDAIGTLA 511 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGGGGH-----HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHhhHhHH-----HHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 99999999999999732211011122 234567777777555433333556666665
No 51
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.25 E-value=4.1e-10 Score=110.15 Aligned_cols=182 Identities=24% Similarity=0.185 Sum_probs=144.7
Q ss_pred HcccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcchHHHHHHcCc
Q 006250 154 QIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIVNAGV 233 (654)
Q Consensus 154 lV~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~~iv~~Ga 233 (654)
++..|+++++.+|..|+..|+.+.. .+++|.|+.+|+++++.++..|+++|+.+.. .++
T Consensus 24 L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~ 82 (211)
T 3ltm_A 24 YIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----------ERA 82 (211)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGG
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------HHH
Confidence 4889999999999999999998763 3689999999999999999999999999863 358
Q ss_pred hHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHHHHhhc
Q 006250 234 CSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVASN 313 (654)
Q Consensus 234 Ip~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~~~~~ 313 (654)
+|.|+++|+++++.++..++++|+.+.. + ..++.|+.+|.++
T Consensus 83 ~~~L~~~l~~~~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l~d~--------------------------- 124 (211)
T 3ltm_A 83 VEPLIKALKDEDGWVRQSAAVALGQIGD--E---------RAVEPLIKALKDE--------------------------- 124 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC--G---------GGHHHHHHHTTCS---------------------------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCc--H---------HHHHHHHHHHhCC---------------------------
Confidence 8999999999999999999999999864 1 3667777777432
Q ss_pred CCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCccchhhhhc
Q 006250 314 SQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVLG 393 (654)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 393 (654)
T Consensus 125 -------------------------------------------------------------------------------- 124 (211)
T 3ltm_A 125 -------------------------------------------------------------------------------- 124 (211)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccChH
Q 006250 394 GTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSD 473 (654)
Q Consensus 394 ~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~ 473 (654)
|+ .++..|+++|+++. . ..+++.|..+|++++..|+..++++|..+..
T Consensus 125 ----------~~----~vr~~a~~aL~~~~--~---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------- 172 (211)
T 3ltm_A 125 ----------DW----FVRIAAAFALGEIG--D---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG------- 172 (211)
T ss_dssp ----------SH----HHHHHHHHHHHHHC--C---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-------
T ss_pred ----------CH----HHHHHHHHHHHHcC--C---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------
Confidence 11 24567888888873 2 2578889999999999999999999988731
Q ss_pred hhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcc
Q 006250 474 LRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTF 519 (654)
Q Consensus 474 lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~ 519 (654)
..+++.|.++++++++.++..++.+|+.+....
T Consensus 173 -------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 173 -------------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp -------------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred -------------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 235677888888888899999999998887543
No 52
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.23 E-value=5.4e-10 Score=108.40 Aligned_cols=179 Identities=24% Similarity=0.198 Sum_probs=146.4
Q ss_pred HcccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcchHHHHHHcCc
Q 006250 154 QIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIVNAGV 233 (654)
Q Consensus 154 lV~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~~iv~~Ga 233 (654)
+++.|+++++.+|..|+.+|+.+.. .++++.|+.+|+++++.++..|+++|+.+.. ..+
T Consensus 19 ~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~----------~~~ 77 (201)
T 3ltj_A 19 YIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----------ERA 77 (201)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGG
T ss_pred HHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------HHH
Confidence 4899999999999999999998763 2579999999999999999999999998863 357
Q ss_pred hHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHHHHhhc
Q 006250 234 CSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVASN 313 (654)
Q Consensus 234 Ip~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~~~~~ 313 (654)
+|.|+++|.++++.++..|+++|+++.. + .+++.|+.+|.++
T Consensus 78 ~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l~d~--------------------------- 119 (201)
T 3ltj_A 78 VEPLIKALKDEDGWVRQSAAVALGQIGD--E---------RAVEPLIKALKDE--------------------------- 119 (201)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC--G---------GGHHHHHHHTTCS---------------------------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCc--H---------HHHHHHHHHHcCC---------------------------
Confidence 9999999999999999999999999864 2 2566676666422
Q ss_pred CCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCccchhhhhc
Q 006250 314 SQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVLG 393 (654)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 393 (654)
T Consensus 120 -------------------------------------------------------------------------------- 119 (201)
T 3ltj_A 120 -------------------------------------------------------------------------------- 119 (201)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccChH
Q 006250 394 GTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSD 473 (654)
Q Consensus 394 ~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~ 473 (654)
|+ .++..|+++|+++. . ..+++.|..+|++++..|+..++++|..+. .
T Consensus 120 ----------~~----~vr~~a~~aL~~~~--~---------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~-----~-- 167 (201)
T 3ltj_A 120 ----------DW----FVRIAAAFALGEIG--D---------ERAVEPLIKALKDEDGWVRQSAADALGEIG-----G-- 167 (201)
T ss_dssp ----------SH----HHHHHHHHHHHHHT--C---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC-----S--
T ss_pred ----------CH----HHHHHHHHHHHHhC--C---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----c--
Confidence 12 24567888888873 2 368889999999999999999999998872 1
Q ss_pred hhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhh
Q 006250 474 LRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLA 516 (654)
Q Consensus 474 lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la 516 (654)
..+++.|..+++++++.++..++.+|+.+.
T Consensus 168 -------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 168 -------------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp -------------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred -------------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 235678888888888999999999998775
No 53
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.18 E-value=6.4e-09 Score=119.13 Aligned_cols=304 Identities=14% Similarity=0.088 Sum_probs=220.3
Q ss_pred hhhHHHHcccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCC-cchHH
Q 006250 148 LCLIWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRD-AESVE 226 (654)
Q Consensus 148 ~~~v~~lV~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~-~e~~~ 226 (654)
...+..+.+-|+++++..|..|+++|+++.. ++ +. ...+|++.++|++.++.+++.|+.++.+|... ++..
T Consensus 106 ~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~--~~----~~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v- 177 (618)
T 1w63_A 106 LLMTNCIKNDLNHSTQFVQGLALCTLGCMGS--SE----MC-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM- 177 (618)
T ss_dssp HHHHHHHHHHHSCSSSHHHHHHHHHHHHHCC--HH----HH-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-
T ss_pred HHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC--HH----HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-
Confidence 4456667888999999999999999999983 32 22 35688999999999999999999999999863 4432
Q ss_pred HHHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhh
Q 006250 227 QIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLH 306 (654)
Q Consensus 227 ~iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~ 306 (654)
.+.++.+.++|.+.++.|+..|+++|..++..+++....+. ..+|.|+.+|..-. ..
T Consensus 178 ----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~--~~v~~l~~~L~~~~----------~~------- 234 (618)
T 1w63_A 178 ----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFR--KLVPQLVRILKNLI----------MS------- 234 (618)
T ss_dssp ----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHH--TTHHHHHHHHHHHH----------HS-------
T ss_pred ----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHH--HHHHHHHHHHHHHH----------cC-------
Confidence 26788899999999999999999999999986665433443 46788888775210 00
Q ss_pred HHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCcc
Q 006250 307 SALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQH 386 (654)
Q Consensus 307 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (654)
..... |.
T Consensus 235 ------~~~~~--------------------~~----------------------------------------------- 241 (618)
T 1w63_A 235 ------GYSPE--------------------HD----------------------------------------------- 241 (618)
T ss_dssp ------CCCTT--------------------TC-----------------------------------------------
T ss_pred ------CCCcc--------------------cc-----------------------------------------------
Confidence 00000 00
Q ss_pred chhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhcc------CChhHHHHHHHH
Q 006250 387 QDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEK------GPEDVKHFSAMA 460 (654)
Q Consensus 387 ~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~------~~~~v~~~aa~A 460 (654)
. ....+|- ++....++|+.++..+++..+ ..+..|..+++. ....|.++|+++
T Consensus 242 -----~-------~~~~~~~----~q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~ 300 (618)
T 1w63_A 242 -----V-------SGISDPF----LQVRILRLLRILGRNDDDSSE-----AMNDILAQVATNTETSKNVGNAILYETVLT 300 (618)
T ss_dssp -----S-------SSSSCHH----HHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTSCCSSTHHHHHHHHHHHH
T ss_pred -----c-------cCCCCCh----HHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhccccccchHHHHHHHHHHH
Confidence 0 0012332 456688899999887765332 455666666542 235899999999
Q ss_pred HHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhhhhccHHHHHHHhccCCHH
Q 006250 461 LMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRATETRIIGPLVNLLDEREPE 540 (654)
Q Consensus 461 L~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~e~~~I~pLV~lL~~~~~~ 540 (654)
+.++.. ++.++ ..+++.|.+++.+.+++++..+..+|+.++...+..-....+.++.+|.+.+.+
T Consensus 301 i~~l~~----~~~l~-----------~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d~~ 365 (618)
T 1w63_A 301 IMDIKS----ESGLR-----------VLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVS 365 (618)
T ss_dssp HHHSCC----CHHHH-----------HHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSCHH
T ss_pred HHhcCC----CHHHH-----------HHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHccCCChh
Confidence 987632 23332 235678889999989999999999999999765443234567889999999999
Q ss_pred HHHHHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhccCCcchHHHHHHHHHHHHhCC
Q 006250 541 VIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIAIKQ 602 (654)
Q Consensus 541 v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~ia~~~ 602 (654)
|++.|...|.+++...| ...| ++.|...+...+..++..++.+++.++.+-
T Consensus 366 Ir~~alelL~~l~~~~n------v~~i-----v~eL~~~l~~~d~e~r~~~v~~I~~la~k~ 416 (618)
T 1w63_A 366 IKRRAMELSFALVNGNN------IRGM-----MKELLYFLDSCEPEFKADCASGIFLAAEKY 416 (618)
T ss_dssp HHHHHHHHHHHHCCSSS------THHH-----HHHHHHHHHHCCHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHccccc------HHHH-----HHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999976544 2333 367777777667667778899999998764
No 54
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.11 E-value=2.5e-10 Score=132.38 Aligned_cols=192 Identities=16% Similarity=0.226 Sum_probs=153.5
Q ss_pred cccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHH-hhccCCHHHHHHHHHHHHHhcC--CcchHHHHHHc
Q 006250 155 IAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLK-LAYEGELEGQENAARAIGLLGR--DAESVEQIVNA 231 (654)
Q Consensus 155 V~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~-LL~s~~~~~q~~Aa~AL~nLa~--~~e~~~~iv~~ 231 (654)
++.|++++++.|..|+++|.+|+. ++.+++.+...|+|++++. +|.+.+.+++++|+++|.||+. +.+.+..+++.
T Consensus 40 l~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~ 118 (684)
T 4gmo_A 40 LKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRL 118 (684)
T ss_dssp HHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHT
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHc
Confidence 788999999999999999999996 5899999999999998765 6788889999999999999995 46788999999
Q ss_pred CchHHHHHhhcCCCh---------------------hHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhh
Q 006250 232 GVCSTFAKNLKDGHM---------------------KVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQE 290 (654)
Q Consensus 232 GaIp~Lv~LL~s~~~---------------------~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~ 290 (654)
|++|+|..+|++... .+.++++.+|.+||..+.+..+.+.+.++++.|+.+|.+..
T Consensus 119 ~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~--- 195 (684)
T 4gmo_A 119 DVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISAD--- 195 (684)
T ss_dssp THHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred ChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcC---
Confidence 999999999863211 23456778888888877788888888888888888874210
Q ss_pred hhHHHHHhhccchhhhHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccC
Q 006250 291 HSKYAIASKQNISSLHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQ 370 (654)
Q Consensus 291 ~~~~al~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~ 370 (654)
.
T Consensus 196 -~------------------------------------------------------------------------------ 196 (684)
T 4gmo_A 196 -I------------------------------------------------------------------------------ 196 (684)
T ss_dssp -C------------------------------------------------------------------------------
T ss_pred -C------------------------------------------------------------------------------
Confidence 0
Q ss_pred CcccccccCCCCCCccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhh--cc
Q 006250 371 PDSHMYAMQPNHHNQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLL--EK 448 (654)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL--~~ 448 (654)
.| ..+...|+.+|..++.+|.+..+.|.+.+....+..++ .+
T Consensus 197 ---------------------------------~~---~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~ 240 (684)
T 4gmo_A 197 ---------------------------------AP---QDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLAT 240 (684)
T ss_dssp ---------------------------------SC---HHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHH
T ss_pred ---------------------------------Cc---HHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhc
Confidence 00 13567899999999999999999999887654443333 44
Q ss_pred CChhHHHHHHHHHHHHH
Q 006250 449 GPEDVKHFSAMALMEIT 465 (654)
Q Consensus 449 ~~~~v~~~aa~AL~~Ia 465 (654)
.+...+..+|+.|.||.
T Consensus 241 ~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 241 GTDPRAVMACGVLHNVF 257 (684)
T ss_dssp SSCTTHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhHh
Confidence 55667889999999985
No 55
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.05 E-value=1.6e-09 Score=125.62 Aligned_cols=221 Identities=14% Similarity=0.150 Sum_probs=156.2
Q ss_pred hcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcchHHHHHHcCchHHH-HHhhcCCChhHHHHHHHHHHHHhcC-Chhh
Q 006250 189 EEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIVNAGVCSTF-AKNLKDGHMKVQSVVAWAVSELASN-HPKC 266 (654)
Q Consensus 189 e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~~iv~~GaIp~L-v~LL~s~~~~vq~~Aa~aL~nLa~~-~~~~ 266 (654)
....|.|+++.|+++++..|..|++||.||+.+++.++.+...|+|+++ ..+|.+++.+|++.|+|+|.||+.+ .++.
T Consensus 32 ~~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~ 111 (684)
T 4gmo_A 32 REDKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF 111 (684)
T ss_dssp HHHTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred chhhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Confidence 3456888999999999999999999999999998999999999999876 4578889999999999999999974 4788
Q ss_pred HHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCc
Q 006250 267 QDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANS 346 (654)
Q Consensus 267 r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 346 (654)
.+.+.+.|++++|..+|+... .. +... . . + ..
T Consensus 112 ~~~l~~~~il~~L~~~l~~~~----~~--~~~~---------~----~------------------------~-----~~ 143 (684)
T 4gmo_A 112 CVHLYRLDVLTAIEHAAKAVL----ET--LTTS---------E----P------------------------P-----FS 143 (684)
T ss_dssp HHHHHHTTHHHHHHHHHHHHH----HH--HHCB---------T----T------------------------B-----GG
T ss_pred HHHHHHcChHHHHHHHHHhhH----HH--Hhhh---------c----c------------------------c-----cc
Confidence 899999999999999996421 00 0000 0 0 0 00
Q ss_pred chhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCC
Q 006250 347 SISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGN 426 (654)
Q Consensus 347 ~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn 426 (654)
.+.. +.......+..++..+||+|+.++
T Consensus 144 ~~~~----------------------------------------------------~~~~~~~~~~~~~l~lL~~L~e~s 171 (684)
T 4gmo_A 144 KLLK----------------------------------------------------AQQRLVWDITGSLLVLIGLLALAR 171 (684)
T ss_dssp GSCH----------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccH----------------------------------------------------HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 0000 000000124456788999999999
Q ss_pred hHHHHHHHhhCcHHHHHHhhccCC---hhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcc
Q 006250 427 LSICRNLTESRALLCFAVLLEKGP---EDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSD 503 (654)
Q Consensus 427 ~~~~~~i~e~gaL~~L~~LL~~~~---~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~ 503 (654)
.+..+.+...+.++.|+.+|.+.+ .+++..++.+|+.++ ++|+++.+........ .+...+..+ .+.++.
T Consensus 172 ~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls---~dn~~~~~~i~~~~~~---~~~~~ll~~-~~~~~~ 244 (684)
T 4gmo_A 172 DEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLS---EDNLKVGQAITDDQET---HVYDVLLKL-ATGTDP 244 (684)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHH---TTCHHHHHHHHTCCSS---CHHHHHHHH-HHSSCT
T ss_pred HHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHh---ccCHHHHHHHHhcchH---HHHHHHHHH-hcCCcH
Confidence 999999999999999999985543 589999999999887 5565555431111111 122233333 334455
Q ss_pred hhhHHHHHHHHhh
Q 006250 504 LLIPSIRAIGNLA 516 (654)
Q Consensus 504 l~~~~~~alg~la 516 (654)
.+..++..|.|+.
T Consensus 245 ~~~la~giL~Ni~ 257 (684)
T 4gmo_A 245 RAVMACGVLHNVF 257 (684)
T ss_dssp THHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHh
Confidence 5667777777764
No 56
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.97 E-value=1.3e-08 Score=110.21 Aligned_cols=289 Identities=9% Similarity=0.017 Sum_probs=173.6
Q ss_pred hHHHHcccccCC--CHHHHHHHHHHHHHhccCC-chhHHHHHhcCCHHHHHHhhccC--CHHHHHHHHHHHHHhcCCcc-
Q 006250 150 LIWEQIAILHTG--SMEEKCDAAASLVSLARDN-DRYGKLIIEEGGVPPLLKLAYEG--ELEGQENAARAIGLLGRDAE- 223 (654)
Q Consensus 150 ~v~~lV~lL~s~--~~~~k~~Aa~aL~~La~~~-~~~~~~I~e~G~Ip~LV~LL~s~--~~~~q~~Aa~AL~nLa~~~e- 223 (654)
++..++..+.++ ++..|..|+.+|..++.+. +..-.... ...++.|+.+|++. +..++..|+++++++...-+
T Consensus 129 ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~ 207 (462)
T 1ibr_B 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA 207 (462)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 355567888888 8999999999999998532 11111111 24678899999988 68999999999999764311
Q ss_pred hH-HHHHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccc
Q 006250 224 SV-EQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNI 302 (654)
Q Consensus 224 ~~-~~iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~ 302 (654)
+. ......-.++.|.+++.+++++++..++++|..++...++.-......+.++.++..+++... +....++-
T Consensus 208 ~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~v~~~a~~----- 281 (462)
T 1ibr_B 208 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDID-EVALQGIE----- 281 (462)
T ss_dssp HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSH-HHHHHHHH-----
T ss_pred hhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch-HHHHHHHH-----
Confidence 11 011111246777778888889999999999999997544321111111567777776654321 11111100
Q ss_pred hhhhHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCC
Q 006250 303 SSLHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNH 382 (654)
Q Consensus 303 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (654)
.+..++..... ... ..... .. ++
T Consensus 282 -~l~~~~~~~~~------------------------------------~~~-----~~~~~------~~--------~~- 304 (462)
T 1ibr_B 282 -FWSNVCDEEMD------------------------------------LAI-----EASEA------AE--------QG- 304 (462)
T ss_dssp -HHHHHHHHHHH------------------------------------HHH-----HHCCT------TC--------SS-
T ss_pred -HHHHHHHHHHH------------------------------------HHH-----hcccc------cc--------cC-
Confidence 11111110000 000 00000 00 00
Q ss_pred CCccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccC-------ChhHHH
Q 006250 383 HNQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKG-------PEDVKH 455 (654)
Q Consensus 383 ~~~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~-------~~~v~~ 455 (654)
....+.... .++ .. -...+|.+...|... +..++.
T Consensus 305 -------------~~~~~~~~~-----~~~-------------------~~-~~~l~p~l~~~l~~~d~d~~~~~~~~r~ 346 (462)
T 1ibr_B 305 -------------RPPEHTSKF-----YAK-------------------GA-LQYLVPILTQTLTKQDENDDDDDWNPCK 346 (462)
T ss_dssp -------------SCSSCCCCC-----HHH-------------------HH-HHHHHHHHHHHTTCCCSSCCTTCCSHHH
T ss_pred -------------CCccchhHH-----HHH-------------------HH-hhhccHHHHHHHHhcccccccccchHHH
Confidence 000000000 000 00 012455566666432 347999
Q ss_pred HHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchh-----hhhccHHHH
Q 006250 456 FSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRA-----TETRIIGPL 530 (654)
Q Consensus 456 ~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~-----~e~~~I~pL 530 (654)
.|+.+|..++..-.. .....+++.+...+.+.+..++..++.++|+++..... .-..++|+|
T Consensus 347 ~a~~~L~~l~~~~~~-------------~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l 413 (462)
T 1ibr_B 347 AAGVCLMLLATCCED-------------DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTL 413 (462)
T ss_dssp HHHHHHHHHHHHTTT-------------THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHH
T ss_pred HHHHHHHHHHHhccH-------------HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 999999998754331 11234677788888888899999999999999975431 113579999
Q ss_pred HHHhccCCHHHHHHHHHHHHhcc
Q 006250 531 VNLLDEREPEVIMEATVALNKFA 553 (654)
Q Consensus 531 V~lL~~~~~~v~~eAa~AL~~~a 553 (654)
+.+|++.++.|+..|+|+|++++
T Consensus 414 ~~~l~d~~~~Vr~~a~~~l~~~~ 436 (462)
T 1ibr_B 414 IELMKDPSVVVRDTAAWTVGRIC 436 (462)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999997
No 57
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.96 E-value=1.9e-07 Score=109.36 Aligned_cols=313 Identities=15% Similarity=0.136 Sum_probs=199.4
Q ss_pred HHcccccCCCHHHHHHHHHHHHHhccCCc-hhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcchH--HHHH
Q 006250 153 EQIAILHTGSMEEKCDAAASLVSLARDND-RYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESV--EQIV 229 (654)
Q Consensus 153 ~lV~lL~s~~~~~k~~Aa~aL~~La~~~~-~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~--~~iv 229 (654)
.+...|.+.+...|..|+.+|+.++.... .......+ ..+|.|+..+++.++.++..++|+|+.++..-... ..-.
T Consensus 373 ~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 451 (861)
T 2bpt_A 373 FVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQH 451 (861)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTT
T ss_pred HHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHH
Confidence 34566778889999999999999985532 22222222 47899999999989999999999999998541100 0001
Q ss_pred HcCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChh-----hHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchh
Q 006250 230 NAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPK-----CQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISS 304 (654)
Q Consensus 230 ~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~-----~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~ 304 (654)
-...+|.|++.|++. +.++..++++|.+++....+ ....+ ...++.|+.++...+
T Consensus 452 ~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d----------------- 511 (861)
T 2bpt_A 452 LPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRID----------------- 511 (861)
T ss_dssp HHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSC-----------------
T ss_pred HHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcC-----------------
Confidence 124578899999776 89999999999999863110 00000 011222222222110
Q ss_pred hhHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCC
Q 006250 305 LHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHN 384 (654)
Q Consensus 305 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (654)
T Consensus 512 -------------------------------------------------------------------------------- 511 (861)
T 2bpt_A 512 -------------------------------------------------------------------------------- 511 (861)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccC---------------
Q 006250 385 QHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKG--------------- 449 (654)
Q Consensus 385 ~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~--------------- 449 (654)
.++ .++..+..||+.++......+..... ..++.++..|...
T Consensus 512 ------------------~~~----~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~ 568 (861)
T 2bpt_A 512 ------------------NEF----NARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQS 568 (861)
T ss_dssp ------------------CGG----GHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHH
T ss_pred ------------------cch----HHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHH
Confidence 001 14456677777776644333322222 2455555555421
Q ss_pred ChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCc-chhhHHHHHHHHhhhcchh----hhh
Q 006250 450 PEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADS-DLLIPSIRAIGNLARTFRA----TET 524 (654)
Q Consensus 450 ~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~-~l~~~~~~alg~la~~~~~----~e~ 524 (654)
..+++..++.+|.+|...... . + .|....+++.++.+++..+. .++..+..+++.++..+.. .-.
T Consensus 569 ~~~~~~~~~~~l~~l~~~~~~--~-----~---~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~ 638 (861)
T 2bpt_A 569 LQELQSNILTVLAAVIRKSPS--S-----V---EPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE 638 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHCGG--G-----T---GGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhh--h-----h---HHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 346888999999999865542 1 1 13345678888899988776 8999999999999875443 122
Q ss_pred ccHHHHHHHhccCCHHHHHHHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhccCC--cchHHHHHHHHHHHHhCC
Q 006250 525 RIIGPLVNLLDEREPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGE--QMIQIPALTLLCYIAIKQ 602 (654)
Q Consensus 525 ~~I~pLV~lL~~~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~--~~~q~~Al~~L~~ia~~~ 602 (654)
.++|.|++.|++.+.+++..|..+++.++..-...-..+. ..-++.|++.+...+ ..+...++.++..++.+.
T Consensus 639 ~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~-----~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~ 713 (861)
T 2bpt_A 639 TFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYS-----DAMMNVLAQMISNPNARRELKPAVLSVFGDIASNI 713 (861)
T ss_dssp HHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHH-----HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchH-----HHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHh
Confidence 4789999999888899999999999887622110001111 223567777777653 446667889998887765
Q ss_pred Cc
Q 006250 603 PE 604 (654)
Q Consensus 603 ~~ 604 (654)
+.
T Consensus 714 ~~ 715 (861)
T 2bpt_A 714 GA 715 (861)
T ss_dssp GG
T ss_pred hh
Confidence 54
No 58
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.91 E-value=1.3e-08 Score=110.09 Aligned_cols=317 Identities=11% Similarity=0.067 Sum_probs=199.6
Q ss_pred HcccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccC--CHHHHHHHHHHHHHhcCC--cchHHHHH
Q 006250 154 QIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEG--ELEGQENAARAIGLLGRD--AESVEQIV 229 (654)
Q Consensus 154 lV~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~--~~~~q~~Aa~AL~nLa~~--~e~~~~iv 229 (654)
++..|.+++..+ ..++.+|..++....... .-.+.+|.|+..+.++ ++..++.|+.+|..++.. ++.-....
T Consensus 95 ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~---~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~ 170 (462)
T 1ibr_B 95 VLQTLGTETYRP-SSASQCVAGIACAEIPVN---QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS 170 (462)
T ss_dssp HHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT---CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH
T ss_pred HHHHhCCCCchh-hHHHHHHHHHHHHhcccc---ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH
Confidence 356666666666 778888888885421100 0146899999999998 899999999999999853 22111111
Q ss_pred HcCchHHHHHhhcCC--ChhHHHHHHHHHHHHhcCChhhHHHHHhCC----cHHHHHHhhccCchhhhhHHHHHhhccch
Q 006250 230 NAGVCSTFAKNLKDG--HMKVQSVVAWAVSELASNHPKCQDHFAQNN----IVRFLVSHLAFETVQEHSKYAIASKQNIS 303 (654)
Q Consensus 230 ~~GaIp~Lv~LL~s~--~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g----~I~~LV~LL~~~~~~~~~~~al~~~~~~~ 303 (654)
...++.++.+|.+. +..+|..|+++++++...-.+ .+.... .++.|..++.
T Consensus 171 -~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~---~~~~~~~~~~l~~~l~~~~~------------------- 227 (462)
T 1ibr_B 171 -NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA---NFDKESERHFIMQVVCEATQ------------------- 227 (462)
T ss_dssp -HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH---HHTSHHHHHHHHHHHHHHTT-------------------
T ss_pred -HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHHhcC-------------------
Confidence 23678899999887 689999999999998642111 000000 0111111110
Q ss_pred hhhHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCC
Q 006250 304 SLHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHH 383 (654)
Q Consensus 304 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (654)
T Consensus 228 -------------------------------------------------------------------------------- 227 (462)
T 1ibr_B 228 -------------------------------------------------------------------------------- 227 (462)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHH
Q 006250 384 NQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALME 463 (654)
Q Consensus 384 ~~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~ 463 (654)
.+|+ .++..++++|..++...++.-........++.+...+++.+++++..+.+.+..
T Consensus 228 ------------------~~~~----~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~ 285 (462)
T 1ibr_B 228 ------------------CPDT----RVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSN 285 (462)
T ss_dssp ------------------CSSH----HHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred ------------------CCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 1122 245667777777765433211111111456666777888899999999999988
Q ss_pred HHhhcccChHh-------h----hhccCCCchHHHHHHHHHHHHhhhc-------CcchhhHHHHHHHHhhhcchhh-hh
Q 006250 464 ITAVAEKNSDL-------R----RSAFKPTSTAAKAVLEQLLHIVEKA-------DSDLLIPSIRAIGNLARTFRAT-ET 524 (654)
Q Consensus 464 Iaa~ae~~~~l-------r----r~a~~~~s~~~~~vv~~L~~ll~~~-------~~~l~~~~~~alg~la~~~~~~-e~ 524 (654)
++....+.... + +..+....+....+++.+++.+... +..++..++.+|+.++..+... -.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~ 365 (462)
T 1ibr_B 286 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVP 365 (462)
T ss_dssp HHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHH
T ss_pred HHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHH
Confidence 87542100000 0 0001111123355777777777543 2467889999999999877631 12
Q ss_pred ccHHHHHHHhccCCHHHHHHHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhccCCcchHHHHHHHHHHHHhCCC
Q 006250 525 RIIGPLVNLLDEREPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIAIKQP 603 (654)
Q Consensus 525 ~~I~pLV~lL~~~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~ia~~~~ 603 (654)
.++|.+...|++.+..++..|.++|+.++.+.. ++..+..+ ...+++|+.+|..+++.++..|+.+|..++...+
T Consensus 366 ~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~---~~~~~~~l-~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~ 440 (462)
T 1ibr_B 366 HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPE---PSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP 440 (462)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC---TTTTCTTT-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCc---HHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcc
Confidence 356677778889999999999999999985432 11000011 4568899999998888888889999999976444
No 59
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.86 E-value=2e-07 Score=106.80 Aligned_cols=292 Identities=13% Similarity=0.111 Sum_probs=191.6
Q ss_pred hHHHHcccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCc-chHHHH
Q 006250 150 LIWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDA-ESVEQI 228 (654)
Q Consensus 150 ~v~~lV~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~-e~~~~i 228 (654)
++..+..+|++.++.+|..|+.++.++...+++.. .+.++.|..+|.+.++.++..|+++|..++... +....+
T Consensus 143 l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~ 217 (618)
T 1w63_A 143 LAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF 217 (618)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH
Confidence 35556888899999999999999999987655432 267888999999999999999999999999753 222222
Q ss_pred HHcCchHHHHHhhcC---------------CChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhH
Q 006250 229 VNAGVCSTFAKNLKD---------------GHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSK 293 (654)
Q Consensus 229 v~~GaIp~Lv~LL~s---------------~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~ 293 (654)
...+|.|+++|.+ .++..|.....+|+.++..+++..+ ..++.|-.+++......+..
T Consensus 218 --~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~~~~~~~~ 290 (618)
T 1w63_A 218 --RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSE-----AMNDILAQVATNTETSKNVG 290 (618)
T ss_dssp --HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTSCCSSTHH
T ss_pred --HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhccccccchH
Confidence 3678999988863 4788999999999999986665432 24556666654221111222
Q ss_pred HHHHhhccchhhhHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcc
Q 006250 294 YAIASKQNISSLHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDS 373 (654)
Q Consensus 294 ~al~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~ 373 (654)
.++... ++..+.... ++. ..+..+
T Consensus 291 ~aV~~e----a~~~i~~l~-------------------------------~~~---~l~~~a------------------ 314 (618)
T 1w63_A 291 NAILYE----TVLTIMDIK-------------------------------SES---GLRVLA------------------ 314 (618)
T ss_dssp HHHHHH----HHHHHHHSC-------------------------------CCH---HHHHHH------------------
T ss_pred HHHHHH----HHHHHHhcC-------------------------------CCH---HHHHHH------------------
Confidence 222211 112121100 000 000000
Q ss_pred cccccCCCCCCccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCChhH
Q 006250 374 HMYAMQPNHHNQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDV 453 (654)
Q Consensus 374 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v 453 (654)
++.+..++. ..||. ++..|..+|..++..++. .+ ......+...|++.+.+|
T Consensus 315 ---------~~~L~~~L~----------~~d~~----vr~~aL~~L~~i~~~~p~---~~--~~~~~~i~~~l~d~d~~I 366 (618)
T 1w63_A 315 ---------INILGRFLL----------NNDKN----IRYVALTSLLKTVQTDHN---AV--QRHRSTIVDCLKDLDVSI 366 (618)
T ss_dssp ---------HHHHHHHHT----------CSSTT----THHHHHHHHHHHHHHHHH---HH--GGGHHHHHHGGGSSCHHH
T ss_pred ---------HHHHHHHHh----------CCCCc----hHHHHHHHHHHHHhhCHH---HH--HHHHHHHHHHccCCChhH
Confidence 001222211 13443 567788888888764332 12 245667788888888899
Q ss_pred HHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhhhhccHHHHHHH
Q 006250 454 KHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRATETRIIGPLVNL 533 (654)
Q Consensus 454 ~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~e~~~I~pLV~l 533 (654)
|..+...|..++. ++| ...+++.|+..+.+.+++++..++.+||.||..|...-...++.|+++
T Consensus 367 r~~alelL~~l~~--~~n--------------v~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~l 430 (618)
T 1w63_A 367 KRRAMELSFALVN--GNN--------------IRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRV 430 (618)
T ss_dssp HHHHHHHHHHHCC--SSS--------------THHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc--ccc--------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 9999888888752 222 145778888888888888999999999999887754334578888888
Q ss_pred hccCCHHHHHHHHHHHHhcc
Q 006250 534 LDEREPEVIMEATVALNKFA 553 (654)
Q Consensus 534 L~~~~~~v~~eAa~AL~~~a 553 (654)
|+....++..++...+..+.
T Consensus 431 L~~~~~~v~~~~~~~l~~ii 450 (618)
T 1w63_A 431 LTTAGSYVRDDAVPNLIQLI 450 (618)
T ss_dssp HHHTGGGSCSSHHHHHHHHH
T ss_pred HHhccchhHHHHHHHHHHHH
Confidence 87777777777777776664
No 60
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.82 E-value=4.4e-07 Score=106.55 Aligned_cols=329 Identities=8% Similarity=0.006 Sum_probs=196.3
Q ss_pred HHHHcccccCC--CHHHHHHHHHHHHHhccCCchhHHHHH--hcCCHHHHHHhhccC--CHHHHHHHHHHHHHhcCC-cc
Q 006250 151 IWEQIAILHTG--SMEEKCDAAASLVSLARDNDRYGKLII--EEGGVPPLLKLAYEG--ELEGQENAARAIGLLGRD-AE 223 (654)
Q Consensus 151 v~~lV~lL~s~--~~~~k~~Aa~aL~~La~~~~~~~~~I~--e~G~Ip~LV~LL~s~--~~~~q~~Aa~AL~nLa~~-~e 223 (654)
+..++..+.++ ++..|..|..+|..++..... +.+. -...++.|+..+.++ +..++..|..+|.++... ..
T Consensus 130 l~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~--~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~ 207 (876)
T 1qgr_A 130 IPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA 207 (876)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH--HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCH--hhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 44457788888 899999999999999853211 1111 124577788888877 588999999999998753 11
Q ss_pred h-HHHHHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccc
Q 006250 224 S-VEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNI 302 (654)
Q Consensus 224 ~-~~~iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~ 302 (654)
+ .........++.+..++.+.+.+++..++++|..++...++.-........++.++..+.+.. +..+.....
T Consensus 208 ~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~v~~~al~---- 281 (876)
T 1qgr_A 208 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDI--DEVALQGIE---- 281 (876)
T ss_dssp HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSS--HHHHHHHHH----
T ss_pred HHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCc--hHHHHHHHH----
Confidence 1 111111235777888888888999999999999998755543222333367777777665432 111110000
Q ss_pred hhhhHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCC
Q 006250 303 SSLHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNH 382 (654)
Q Consensus 303 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (654)
.+..++..... +..--...+. ++.
T Consensus 282 -~l~~l~~~~~~---------------------------------~~~~~~~~~~----------------------~~~ 305 (876)
T 1qgr_A 282 -FWSNVCDEEMD---------------------------------LAIEASEAAE----------------------QGR 305 (876)
T ss_dssp -HHHHHHHHHHH---------------------------------HHHHHHHHHH----------------------HSS
T ss_pred -HHHHHHHHHHh---------------------------------Hhhhhccccc----------------------cCC
Confidence 11111100000 0000000000 000
Q ss_pred CCccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhcc-------CChhHHH
Q 006250 383 HNQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEK-------GPEDVKH 455 (654)
Q Consensus 383 ~~~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~-------~~~~v~~ 455 (654)
...+ .... .++. .. ...++.+..+|.. .+..+++
T Consensus 306 ------------~~~~----~~~~---~~~~-------------------~~-~~ll~~ll~~l~~~~~d~~~~~~~~r~ 346 (876)
T 1qgr_A 306 ------------PPEH----TSKF---YAKG-------------------AL-QYLVPILTQTLTKQDENDDDDDWNPCK 346 (876)
T ss_dssp ------------CCSS----CCCC---HHHH-------------------HH-HHHHHHHHHHTTCCCSSCCTTCCCHHH
T ss_pred ------------Cccc----hhHH---HHHH-------------------HH-HHHhHHHHHHhhcccccccccccHHHH
Confidence 0000 0000 0000 00 1235556666642 3457999
Q ss_pred HHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcch-h----hhhccHHHH
Q 006250 456 FSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFR-A----TETRIIGPL 530 (654)
Q Consensus 456 ~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~-~----~e~~~I~pL 530 (654)
.++.+|..++..... .....+++.+...+.+.++.++..++.++|.++.... . .-..++|.|
T Consensus 347 ~a~~~l~~l~~~~~~-------------~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l 413 (876)
T 1qgr_A 347 AAGVCLMLLATCCED-------------DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTL 413 (876)
T ss_dssp HHHHHHHHHHHHHGG-------------GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcH-------------hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 999999988754331 1123567777788888888999999999999997654 1 123578999
Q ss_pred HHHhccCCHHHHHHHHHHHHhccccCC-CC-CHHHHHHHHHCCCHHHHHHhhccCCcchHHHHHHHHHHHHhC
Q 006250 531 VNLLDEREPEVIMEATVALNKFATTEN-YL-SETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIAIK 601 (654)
Q Consensus 531 V~lL~~~~~~v~~eAa~AL~~~a~~~n-~~-~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~ia~~ 601 (654)
+.+|++.++.|+..|+|+|++++..-. +. ...+.. ..++.|+..+..+ +.++..|+.+|.+++..
T Consensus 414 ~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~-----~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 414 IELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLA-----PLLQCLIEGLSAE-PRVASNVCWAFSSLAEA 480 (876)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHH-----HHHHHHHHHTTSC-HHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHH-----HHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999973211 00 011222 2356778888664 55788888888888643
No 61
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.79 E-value=5.9e-07 Score=105.43 Aligned_cols=315 Identities=14% Similarity=0.147 Sum_probs=191.5
Q ss_pred HHcccccCCCHHHHHHHHHHHHHhccCCc-hhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCC-cc---hHHH
Q 006250 153 EQIAILHTGSMEEKCDAAASLVSLARDND-RYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRD-AE---SVEQ 227 (654)
Q Consensus 153 ~lV~lL~s~~~~~k~~Aa~aL~~La~~~~-~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~-~e---~~~~ 227 (654)
.+...|++.+...|..|+.+|+.++.... +...... ...+|.|+.+|++.++.++..|+++|++++.. +. ....
T Consensus 370 ~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 448 (876)
T 1qgr_A 370 FIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY 448 (876)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT
T ss_pred HHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH
Confidence 34567788899999999999999986533 2222222 35799999999998999999999999999964 21 1111
Q ss_pred HHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhH-----------HHHHh--CCcHHHHHHhhccCchhhhhHH
Q 006250 228 IVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQ-----------DHFAQ--NNIVRFLVSHLAFETVQEHSKY 294 (654)
Q Consensus 228 iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r-----------~~i~~--~g~I~~LV~LL~~~~~~~~~~~ 294 (654)
-...+|.|++.|.+. +.++..++|+|.+++....+.. +.+.. ...++.|+.++....
T Consensus 449 --l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~------- 518 (876)
T 1qgr_A 449 --LAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPD------- 518 (876)
T ss_dssp --HHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCS-------
T ss_pred --HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcC-------
Confidence 134678888888875 8899999999999986311000 00000 011122222211100
Q ss_pred HHHhhccchhhhHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCccc
Q 006250 295 AIASKQNISSLHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSH 374 (654)
Q Consensus 295 al~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~ 374 (654)
T Consensus 519 -------------------------------------------------------------------------------- 518 (876)
T 1qgr_A 519 -------------------------------------------------------------------------------- 518 (876)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCCccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhcc------
Q 006250 375 MYAMQPNHHNQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEK------ 448 (654)
Q Consensus 375 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~------ 448 (654)
.+++ .++..+..||+.++........... ...++.++..+..
T Consensus 519 ---------------------------~~~~----~~r~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~ 566 (876)
T 1qgr_A 519 ---------------------------GHQN----NLRSSAYESLMEIVKNSAKDCYPAV-QKTTLVIMERLQQVLQMES 566 (876)
T ss_dssp ---------------------------SCST----THHHHHHHHHHHHHHTCCSTTHHHH-HHHHHHHHHHHHHHHTTTT
T ss_pred ---------------------------cchh----hHHHHHHHHHHHHHHHCchhhHHHH-HHHHHHHHHHHHHHHHHHh
Confidence 0011 1345566666666653322222211 1334444444432
Q ss_pred -----CC----hhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcC--cchhhHHHHHHHHhhh
Q 006250 449 -----GP----EDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKAD--SDLLIPSIRAIGNLAR 517 (654)
Q Consensus 449 -----~~----~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~--~~l~~~~~~alg~la~ 517 (654)
.+ .+++..+++++..+...-.. .++. |....+++.|+.++++.+ ..++..++.+|++++.
T Consensus 567 ~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~-~~~~--------~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~ 637 (876)
T 1qgr_A 567 HIQSTSDRIQFNDLQSLLCATLQNVLRKVQH-QDAL--------QISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVE 637 (876)
T ss_dssp SCCSTTHHHHHHHHHHHHHHHHHHHHTTSCH-HHHH--------TTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHH
T ss_pred ccCChhhHHHHHHHHHHHHHHHHHHHHHhCh-hhhh--------HHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHH
Confidence 11 45778889999888743320 1221 234567888899998765 4688999999999997
Q ss_pred cchh----hhhccHHHHHHHhccC-CHHHHHHHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhccC--CcchHHH
Q 006250 518 TFRA----TETRIIGPLVNLLDER-EPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFG--EQMIQIP 590 (654)
Q Consensus 518 ~~~~----~e~~~I~pLV~lL~~~-~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~--~~~~q~~ 590 (654)
.+.. .-..++|.|+..|.+. +..++..|.++|+.++..-. ++..-.. ..-++.|++.+..+ +..++..
T Consensus 638 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~----~~~~~~~-~~i~~~l~~~l~~~~~~~~~~~~ 712 (876)
T 1qgr_A 638 VLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQ----SNIIPFC-DEVMQLLLENLGNENVHRSVKPQ 712 (876)
T ss_dssp HHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHG----GGGHHHH-HHHHHHHHHHHTCTTSCGGGHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHH----HhhhhhH-HHHHHHHHHHhCCccccHHhhHH
Confidence 5332 1124788899999876 88999999999998862110 0111111 23456778888763 3447777
Q ss_pred HHHHHHHHHhCCCc
Q 006250 591 ALTLLCYIAIKQPE 604 (654)
Q Consensus 591 Al~~L~~ia~~~~~ 604 (654)
++.+++.++...+.
T Consensus 713 ~~~~l~~i~~~~g~ 726 (876)
T 1qgr_A 713 ILSVFGDIALAIGG 726 (876)
T ss_dssp HHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHhch
Confidence 99999999765543
No 62
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.76 E-value=3.6e-06 Score=98.56 Aligned_cols=324 Identities=12% Similarity=0.090 Sum_probs=205.0
Q ss_pred hHHHHcccccCCCHHHHHHHHHHHHHhccCCchh---HHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCc----
Q 006250 150 LIWEQIAILHTGSMEEKCDAAASLVSLARDNDRY---GKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDA---- 222 (654)
Q Consensus 150 ~v~~lV~lL~s~~~~~k~~Aa~aL~~La~~~~~~---~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~---- 222 (654)
++..++..+++.++.+|..++++|+.++..-... ... -...+|.|+..|++. +.++..|+++|.+++..-
T Consensus 412 il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~ 488 (861)
T 2bpt_A 412 ALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQH--LPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEAT 488 (861)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTT--HHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSS
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHH--HHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhccccc
Confidence 3445677888899999999999999987431110 011 124588899999775 899999999999988531
Q ss_pred -c-hHHHHHHcCchHHHHHhhcCCC--hhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHh
Q 006250 223 -E-SVEQIVNAGVCSTFAKNLKDGH--MKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIAS 298 (654)
Q Consensus 223 -e-~~~~iv~~GaIp~Lv~LL~s~~--~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~ 298 (654)
+ ....+ ...++.|++++.+.+ ..++..+..+|+.++...+........ ..+|.++..|....
T Consensus 489 ~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~----------- 554 (861)
T 2bpt_A 489 PSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQTM----------- 554 (861)
T ss_dssp SCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHT-----------
T ss_pred chhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHH-----------
Confidence 1 11111 235788888887544 789999999999998744332111111 24444444442100
Q ss_pred hccchhhhHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCccccccc
Q 006250 299 KQNISSLHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAM 378 (654)
Q Consensus 299 ~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~ 378 (654)
+ +. . . +.
T Consensus 555 --~---~~-------------------------------------------~-----------------~-i~------- 561 (861)
T 2bpt_A 555 --S---VD-------------------------------------------E-----------------N-QL------- 561 (861)
T ss_dssp --T---SC-------------------------------------------G-----------------G-GC-------
T ss_pred --h---hh-------------------------------------------c-----------------c-cC-------
Confidence 0 00 0 0 00
Q ss_pred CCCCCCccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCCh-hHHHHH
Q 006250 379 QPNHHNQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPE-DVKHFS 457 (654)
Q Consensus 379 ~~~~~~~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~-~v~~~a 457 (654)
..+|.+....++..+..+|.+++.+.........+ ..++.+..++++.+. .++..+
T Consensus 562 ----------------------~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~v~~~~ 618 (861)
T 2bpt_A 562 ----------------------TLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD-MLMGLFFRLLEKKDSAFIEDDV 618 (861)
T ss_dssp ----------------------CHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHHHHHSTTGGGTHHHH
T ss_pred ----------------------ChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHccCCCCcHHHHH
Confidence 00011112346677888888888755432221121 467777888888877 899999
Q ss_pred HHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhh----hhccHHHHHHH
Q 006250 458 AMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRAT----ETRIIGPLVNL 533 (654)
Q Consensus 458 a~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~----e~~~I~pLV~l 533 (654)
.+++..++...+.. | .|-...+++.|...++..+++++..++..++.+++.+... -..+++.+++.
T Consensus 619 ~~~l~~l~~~~~~~-------~---~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~ 688 (861)
T 2bpt_A 619 FYAISALAASLGKG-------F---EKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQM 688 (861)
T ss_dssp HHHHHHHHHHHGGG-------G---HHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh-------H---HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHH
Confidence 99999987654421 1 1334557888888887777889999999999999865531 23468888898
Q ss_pred hccCC--HHHHHHHHHHHHhccc--cCCCCCHHHHHHHHHCCCHHHHHHhhccCC-----------cchHHHHHHHHHHH
Q 006250 534 LDERE--PEVIMEATVALNKFAT--TENYLSETHSKAIINAGGVKHLIQLVYFGE-----------QMIQIPALTLLCYI 598 (654)
Q Consensus 534 L~~~~--~~v~~eAa~AL~~~a~--~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~-----------~~~q~~Al~~L~~i 598 (654)
|++.+ .+++..+..+|+.++. ++++ ..++- ..+++|++.+.... ..++..++.+++.+
T Consensus 689 l~~~~~~~~vr~~~~~~l~~l~~~~~~~~-----~~~l~--~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i 761 (861)
T 2bpt_A 689 ISNPNARRELKPAVLSVFGDIASNIGADF-----IPYLN--DIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGI 761 (861)
T ss_dssp HHCTTCCTTHHHHHHHHHHHHHHHHGGGG-----HHHHH--HHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCccccHhhhHHHHHHHHHHHHHhhhhH-----HHHHH--HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 87654 7899999999988862 2221 11221 23677777776432 12455678888888
Q ss_pred HhCCC
Q 006250 599 AIKQP 603 (654)
Q Consensus 599 a~~~~ 603 (654)
+...+
T Consensus 762 ~~~l~ 766 (861)
T 2bpt_A 762 VAGLH 766 (861)
T ss_dssp HHHTT
T ss_pred HHHHc
Confidence 65444
No 63
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.45 E-value=3e-05 Score=88.72 Aligned_cols=301 Identities=16% Similarity=0.118 Sum_probs=188.8
Q ss_pred hhhhHHHHcccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhh--ccCCHHHHHHHHHHHHHhcCC-cc
Q 006250 147 ILCLIWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLA--YEGELEGQENAARAIGLLGRD-AE 223 (654)
Q Consensus 147 i~~~v~~lV~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL--~s~~~~~q~~Aa~AL~nLa~~-~e 223 (654)
+...+..+.+-|+++++..+..|.++|+++.. ++... ..+|++.++| .+.++.+++.|+-++.++... ++
T Consensus 109 ~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e~~~-----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~ 181 (621)
T 2vgl_A 109 IRLINNAIKNDLASRNPTFMGLALHCIANVGS--REMAE-----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPD 181 (621)
T ss_dssp HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC--HHHHH-----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHhhccCC--HHHHH-----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChh
Confidence 34456666788889999999999999999963 33322 4678999999 788899999999999999863 33
Q ss_pred hHHHHHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhcc----Cch--hhhhHHHHH
Q 006250 224 SVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAF----ETV--QEHSKYAIA 297 (654)
Q Consensus 224 ~~~~iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~----~~~--~~~~~~al~ 297 (654)
. +...+.++.|.++|.+.++.|+..|+.+|..++..+++. + ...+|.++..|.. +.. .++.
T Consensus 182 ~---~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~---~--~~~~~~~~~~L~~ll~~~~~~~~~~~----- 248 (621)
T 2vgl_A 182 L---VPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEE---F--KTSVSLAVSRLSRIVTSASTDLQDYT----- 248 (621)
T ss_dssp G---CCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHH---H--TTHHHHHHHHHHHHHHCCSSSCSTTE-----
T ss_pred h---cCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHH---H--HHHHHHHHHHHHHHHhCCCCCccchh-----
Confidence 2 222578999999999999999999999999999866542 1 1356666665531 100 0000
Q ss_pred hhccchhhhHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccc
Q 006250 298 SKQNISSLHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYA 377 (654)
Q Consensus 298 ~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~ 377 (654)
..+-+++++|
T Consensus 249 ------------------------------------------~~~~~~~w~q---------------------------- 258 (621)
T 2vgl_A 249 ------------------------------------------YYFVPAPWLS---------------------------- 258 (621)
T ss_dssp ------------------------------------------ETTEESHHHH----------------------------
T ss_pred ------------------------------------------hcCCCCchHH----------------------------
Confidence 0000111221
Q ss_pred cCCCCCCccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcC-ChHHHHHHHhhCcHHHHHHhh---------c
Q 006250 378 MQPNHHNQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKG-NLSICRNLTESRALLCFAVLL---------E 447 (654)
Q Consensus 378 ~~~~~~~~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~g-n~~~~~~i~e~gaL~~L~~LL---------~ 447 (654)
....+.|..++.. +++..+.+.+ .|..++..+ .
T Consensus 259 -----------------------------------i~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~ 301 (621)
T 2vgl_A 259 -----------------------------------VKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQ 301 (621)
T ss_dssp -----------------------------------HHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHH
T ss_pred -----------------------------------HHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCccccccc
Confidence 1122222222211 1111111111 111111111 1
Q ss_pred cCC--hhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhh--h
Q 006250 448 KGP--EDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRAT--E 523 (654)
Q Consensus 448 ~~~--~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~--e 523 (654)
+.+ ..|.++|+.++..+. .+++++ +.+++.|.+++.+.+++++..+..+|..++...+.. -
T Consensus 302 ~~n~~~aVl~ea~~~i~~l~----~~~~~~-----------~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~ 366 (621)
T 2vgl_A 302 HSNAKNAVLFEAISLIIHHD----SEPNLL-----------VRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAV 366 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHHC----CCHHHH-----------HHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHH
T ss_pred ccchHHHHHHHHHHHHHhcC----CcHHHH-----------HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHH
Confidence 112 278888888888774 233333 346778889998888899999999999998765321 1
Q ss_pred hccHHHHHHHhc-cCCHHHHHHHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhccCCcchHHHHHHHHHHHHh
Q 006250 524 TRIIGPLVNLLD-EREPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIAI 600 (654)
Q Consensus 524 ~~~I~pLV~lL~-~~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~ia~ 600 (654)
....+.++.+|+ +.+..|++.|...|.++++ .+|...|+ +-|...+...|......++..++.++.
T Consensus 367 ~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~------~~Nv~~Iv-----~eL~~yl~~~d~~~~~~~v~~I~~la~ 433 (621)
T 2vgl_A 367 KTHIETVINALKTERDVSVRQRAVDLLYAMCD------RSNAQQIV-----AEMLSYLETADYSIREEIVLKVAILAE 433 (621)
T ss_dssp HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC------HHHHHHHH-----HHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC------hhhHHHHH-----HHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 235667778888 8899999999999988863 34555554 345555555555555556666666664
No 64
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.39 E-value=2.4e-08 Score=90.71 Aligned_cols=118 Identities=20% Similarity=0.213 Sum_probs=88.2
Q ss_pred CcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhh
Q 006250 437 RALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLA 516 (654)
Q Consensus 437 gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la 516 (654)
..++.|..+|++++..+|..|+++|.++. . + . ++.|++++++.++.++..++++||.+.
T Consensus 12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~~---~--------------~---~-~~~L~~~L~d~~~~vR~~A~~aL~~~~ 70 (131)
T 1te4_A 12 SGLVPRGSHMADENKWVRRDVSTALSRMG---D--------------E---A-FEPLLESLSNEDWRIRGAAAWIIGNFQ 70 (131)
T ss_dssp ---------CCSSCCCSSSSCCSSTTSCS---S--------------T---T-HHHHHHGGGCSCHHHHHHHHHHHGGGC
T ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHhC---c--------------h---H-HHHHHHHHcCCCHHHHHHHHHHHHhcC
Confidence 56777888999999999999999986542 1 1 1 377888999888999999999999887
Q ss_pred hcchhhhhccHHHHHHHhccCCHHHHHHHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhccCCcchHHHHHHHHH
Q 006250 517 RTFRATETRIIGPLVNLLDEREPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLC 596 (654)
Q Consensus 517 ~~~~~~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~ 596 (654)
. ...+++|+++|++.++.|+.+|+|+|+++.. ..+++.|+.+|...++.++..|+.+|.
T Consensus 71 ~------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~---------------~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 71 D------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG---------------ERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp S------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS---------------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred C------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------------HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3 3479999999999999999999999999841 124688999998777777777877764
No 65
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.36 E-value=5.3e-05 Score=89.32 Aligned_cols=267 Identities=15% Similarity=0.116 Sum_probs=174.7
Q ss_pred ccccc---CCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCC--------HHHHHHHHHHHHHhcCCcc
Q 006250 155 IAILH---TGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGE--------LEGQENAARAIGLLGRDAE 223 (654)
Q Consensus 155 V~lL~---s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~--------~~~q~~Aa~AL~nLa~~~e 223 (654)
-..|. ++++..|.-|+-+|+-+..... . .++..|...|.+.+ +.++..|+-+|+.+..+..
T Consensus 398 ~~yL~~~~s~~~~ik~GAllaLGli~ag~~---~-----~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~ 469 (963)
T 4ady_A 398 APYLPGSRASSRFIKGGSLYGLGLIYAGFG---R-----DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSA 469 (963)
T ss_dssp TTTSTTSCCSCHHHHHHHHHHHHHHTTTTT---H-----HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCC
T ss_pred HHhccccCCCcHHHHHHHHHHHHHhcCCCc---H-----HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCC
Confidence 44555 5678888889999988864422 1 14677788887655 6688889999988766543
Q ss_pred hHHHHHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhc--CChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhcc
Q 006250 224 SVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELAS--NHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQN 301 (654)
Q Consensus 224 ~~~~iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~--~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~ 301 (654)
+.+ +++.|..+|.+.+..+++.|+.+|+.+-. ++.+ ++..|+..+.+.. +
T Consensus 470 ~ee------v~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~---------ai~~LL~~~~e~~---~---------- 521 (963)
T 4ady_A 470 NIE------VYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPE---------AIHDMFTYSQETQ---H---------- 521 (963)
T ss_dssp CHH------HHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHH---------HHHHHHHHHHHCS---C----------
T ss_pred CHH------HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHH---------HHHHHHHHHhccC---c----------
Confidence 322 56778888887777777788888887632 2221 3344444432110 0
Q ss_pred chhhhHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCC
Q 006250 302 ISSLHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPN 381 (654)
Q Consensus 302 ~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~ 381 (654)
T Consensus 522 -------------------------------------------------------------------------------- 521 (963)
T 4ady_A 522 -------------------------------------------------------------------------------- 521 (963)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhc-cCChhHHHHHHHH
Q 006250 382 HHNQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLE-KGPEDVKHFSAMA 460 (654)
Q Consensus 382 ~~~~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~-~~~~~v~~~aa~A 460 (654)
..+.+.++.+|+.+..|+.+.+ +.++.+|. +.++.+|+-++++
T Consensus 522 ---------------------------e~vrR~aalgLGll~~g~~e~~---------~~li~~L~~~~dp~vRygaa~a 565 (963)
T 4ady_A 522 ---------------------------GNITRGLAVGLALINYGRQELA---------DDLITKMLASDESLLRYGGAFT 565 (963)
T ss_dssp ---------------------------HHHHHHHHHHHHHHTTTCGGGG---------HHHHHHHHHCSCHHHHHHHHHH
T ss_pred ---------------------------HHHHHHHHHHHHhhhCCChHHH---------HHHHHHHHhCCCHHHHHHHHHH
Confidence 1245668888888888876444 44444444 5678888888888
Q ss_pred HHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhh-hcCcchhhHHHHHHHHhhhcchhhhhccHHHHHHHh-ccCC
Q 006250 461 LMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVE-KADSDLLIPSIRAIGNLARTFRATETRIIGPLVNLL-DERE 538 (654)
Q Consensus 461 L~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~-~~~~~l~~~~~~alg~la~~~~~~e~~~I~pLV~lL-~~~~ 538 (654)
+.--.++..+ ..+|+.|+..+. +.+++++..++.+||-++-.- ..+++.++++| ++.+
T Consensus 566 lglAyaGTGn----------------~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~----~e~v~rlv~~L~~~~d 625 (963)
T 4ady_A 566 IALAYAGTGN----------------NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRD----YTTVPRIVQLLSKSHN 625 (963)
T ss_dssp HHHHTTTSCC----------------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSS----CSSHHHHTTTGGGCSC
T ss_pred HHHHhcCCCC----------------HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCC----HHHHHHHHHHHHhcCC
Confidence 8755555543 234555665554 445778888999998876332 13788888865 6788
Q ss_pred HHHHHHHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhccCCcchHHHHHHHHHHHHhCCCc
Q 006250 539 PEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIAIKQPE 604 (654)
Q Consensus 539 ~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~ia~~~~~ 604 (654)
+.|+..|++||+.++.+.. . .+ .+..|..|+...+..+...|+.+|..+....++
T Consensus 626 ~~VR~gAalALGli~aGn~--~---~~------aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnn 680 (963)
T 4ady_A 626 AHVRCGTAFALGIACAGKG--L---QS------AIDVLDPLTKDPVDFVRQAAMIALSMILIQQTE 680 (963)
T ss_dssp HHHHHHHHHHHHHHTSSSC--C---HH------HHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCT
T ss_pred HHHHHHHHHHHHHhccCCC--c---HH------HHHHHHHHccCCCHHHHHHHHHHHHHHhcCCcc
Confidence 9999999999998853221 1 11 246777777766666666688888888544333
No 66
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.27 E-value=6.2e-05 Score=92.39 Aligned_cols=346 Identities=15% Similarity=0.095 Sum_probs=206.2
Q ss_pred HHHHcccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcchHHHHHH
Q 006250 151 IWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIVN 230 (654)
Q Consensus 151 v~~lV~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~~iv~ 230 (654)
+-.++..+.+.|.+.|..|...|.+....+...-..-.....++.|++.|.+.++.+|..|+.+|.+++..-.. ..+
T Consensus 8 l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~~-- 84 (1230)
T 1u6g_C 8 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQV-- 84 (1230)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HHH--
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HHH--
Confidence 33457788899999999999999887543211000001124578899999988899999999999999865221 111
Q ss_pred cCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhh------HHHHHhCCcHHHHHHhhcc-CchhhhhHHHHHhhccch
Q 006250 231 AGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKC------QDHFAQNNIVRFLVSHLAF-ETVQEHSKYAIASKQNIS 303 (654)
Q Consensus 231 ~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~------r~~i~~~g~I~~LV~LL~~-~~~~~~~~~al~~~~~~~ 303 (654)
...++.|+..|.++++.+|..++.+|+.++...+.. ..... ...+|.|+..+.+ +.. .....|+.
T Consensus 85 ~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~-~~llp~L~~~l~~~~~~-~~~~~al~------ 156 (1230)
T 1u6g_C 85 ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVC-KKITGRLTSAIAKQEDV-SVQLEALD------ 156 (1230)
T ss_dssp HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHH-HHHHHHHHHHHSCCSCH-HHHHHHHH------
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHH-HHHHHHHHHHHcCCCch-HHHHHHHH------
Confidence 235778888888888899999999999998643221 11111 2478999999873 321 11111111
Q ss_pred hhhHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCC
Q 006250 304 SLHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHH 383 (654)
Q Consensus 304 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (654)
.+..++..... . + . ..++.++..
T Consensus 157 ~l~~~~~~~~~---~---------l--------~--------~~~~~ll~~----------------------------- 179 (1230)
T 1u6g_C 157 IMADMLSRQGG---L---------L--------V--------NFHPSILTC----------------------------- 179 (1230)
T ss_dssp HHHHHHHHTCS---S---------C--------T--------TTHHHHHHH-----------------------------
T ss_pred HHHHHHHHhHh---H---------H--------H--------HHHHHHHHH-----------------------------
Confidence 11111111000 0 0 0 001111110
Q ss_pred CccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCC-hhHHHHHHHHHH
Q 006250 384 NQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGP-EDVKHFSAMALM 462 (654)
Q Consensus 384 ~~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~-~~v~~~aa~AL~ 462 (654)
+... ...+++ .++..|+.||+.++....+. + -...++.|...|.+.+ ..++..++.++.
T Consensus 180 --l~~~----------L~~~~~----~vR~~a~~al~~l~~~~~~~---~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~ 239 (1230)
T 1u6g_C 180 --LLPQ----------LTSPRL----AVRKRTIIALGHLVMSCGNI---V-FVDLIEHLLSELSKNDSMSTTRTYIQCIA 239 (1230)
T ss_dssp --HGGG----------GGCSSH----HHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHH
T ss_pred --HHHH----------HcCCcH----HHHHHHHHHHHHHHHhcCHH---H-HHHHHHHHHHHhccCCchhHHHHHHHHHH
Confidence 1110 112233 46788999999998754321 1 1245777777776654 478888999999
Q ss_pred HHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhh----hhccHHHHHHHhccC-
Q 006250 463 EITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRAT----ETRIIGPLVNLLDER- 537 (654)
Q Consensus 463 ~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~----e~~~I~pLV~lL~~~- 537 (654)
.|+..... . |.+. ...+++.+++.+.+.+++++..+..+++.+++.+... -..++|++++.|...
T Consensus 240 ~l~~~~~~--~-----~~~~---l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~ 309 (1230)
T 1u6g_C 240 AISRQAGH--R-----IGEY---LEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDP 309 (1230)
T ss_dssp HHHHHSSG--G-----GTTS---CTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC-
T ss_pred HHHHHhHH--H-----HHHH---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCC
Confidence 98754432 1 2221 2347788888898888999999999999999865431 123567776666310
Q ss_pred ------------------------------------CHHHHHHHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhc
Q 006250 538 ------------------------------------EPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVY 581 (654)
Q Consensus 538 ------------------------------------~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~ 581 (654)
...+++.|+.+|..++... ++....+. ...++.|+..++
T Consensus 310 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~----~~~~~~~~-~~l~~~l~~~l~ 384 (1230)
T 1u6g_C 310 NYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTR----HEMLPEFY-KTVSPALISRFK 384 (1230)
T ss_dssp -----------------------------------CTTHHHHHHHHHHHHHHTTC----CTTHHHHH-TTTHHHHHSTTS
T ss_pred CCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhc----hhHHHHHH-HHHHHHHHHHcC
Confidence 1236788888888887422 11111222 335677777676
Q ss_pred cCCcchHHHHHHHHHHHH
Q 006250 582 FGEQMIQIPALTLLCYIA 599 (654)
Q Consensus 582 ~~~~~~q~~Al~~L~~ia 599 (654)
..++.+...++.+|..+.
T Consensus 385 d~~~~Vr~~a~~~l~~l~ 402 (1230)
T 1u6g_C 385 EREENVKADVFHAYLSLL 402 (1230)
T ss_dssp CSSSHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHH
Confidence 555556666777766554
No 67
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.21 E-value=6.5e-05 Score=88.58 Aligned_cols=260 Identities=13% Similarity=0.072 Sum_probs=166.7
Q ss_pred HHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcchHHHHHHcCchHHHHHhh-
Q 006250 163 MEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIVNAGVCSTFAKNL- 241 (654)
Q Consensus 163 ~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~~iv~~GaIp~Lv~LL- 241 (654)
+.++..|+-.|+-....+. +..+++.|..+|.+.+....+.|+.+|+.+-.+..+.. ++..|++.+
T Consensus 451 ~~ir~gAaLGLGla~~GS~-------~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~------ai~~LL~~~~ 517 (963)
T 4ady_A 451 DVLLHGASLGIGLAAMGSA-------NIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPE------AIHDMFTYSQ 517 (963)
T ss_dssp HHHHHHHHHHHHHHSTTCC-------CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHH------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHH------HHHHHHHHHh
Confidence 5677778888887643211 12356778888888777777889999998755544433 345566655
Q ss_pred cCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHHHHhhcCCCCCCCC
Q 006250 242 KDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVASNSQNPKDHR 321 (654)
Q Consensus 242 ~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~~~~~~~~~~~~~ 321 (654)
.+.+..++..++.+|+.+..+.++ .++.+++.|.... ..+.+|+.+ .++-.+
T Consensus 518 e~~~e~vrR~aalgLGll~~g~~e---------~~~~li~~L~~~~-dp~vRygaa--------~alglA---------- 569 (963)
T 4ady_A 518 ETQHGNITRGLAVGLALINYGRQE---------LADDLITKMLASD-ESLLRYGGA--------FTIALA---------- 569 (963)
T ss_dssp HCSCHHHHHHHHHHHHHHTTTCGG---------GGHHHHHHHHHCS-CHHHHHHHH--------HHHHHH----------
T ss_pred ccCcHHHHHHHHHHHHhhhCCChH---------HHHHHHHHHHhCC-CHHHHHHHH--------HHHHHH----------
Confidence 345678999999999999875654 6677888886432 123344211 001100
Q ss_pred CCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCccchhhhhcCCCCCCCC
Q 006250 322 TAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVLGGTSTKGRE 401 (654)
Q Consensus 322 ~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 401 (654)
| .+-|++..++.+..- +..
T Consensus 570 ----------------y-aGTGn~~aIq~LL~~-----------------------------------~~~--------- 588 (963)
T 4ady_A 570 ----------------Y-AGTGNNSAVKRLLHV-----------------------------------AVS--------- 588 (963)
T ss_dssp ----------------T-TTSCCHHHHHHHHHH-----------------------------------HHH---------
T ss_pred ----------------h-cCCCCHHHHHHHHHH-----------------------------------hcc---------
Confidence 1 122333334333221 111
Q ss_pred CCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHH-hhccCChhHHHHHHHHHHHHHhhcccChHhhhhccC
Q 006250 402 SEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAV-LLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFK 480 (654)
Q Consensus 402 ~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~-LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~ 480 (654)
..+. .++..|+-+|+.++.|+++ .++.++. |++++++.||+.+++||..++++..+
T Consensus 589 d~~d----~VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~---------- 645 (963)
T 4ady_A 589 DSND----DVRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL---------- 645 (963)
T ss_dssp CSCH----HHHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC----------
T ss_pred CCcH----HHHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc----------
Confidence 1222 3678999999999998863 3444444 56788999999999999999866441
Q ss_pred CCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhhhh----ccHHHHHHHhc--cCCHHHHHHHHHHHHhcc
Q 006250 481 PTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRATET----RIIGPLVNLLD--EREPEVIMEATVALNKFA 553 (654)
Q Consensus 481 ~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~e~----~~I~pLV~lL~--~~~~~v~~eAa~AL~~~a 553 (654)
+.+++.|.++..+.++.++..|+.|||-+.....+... .+...|..... +.+...+.-|..|.+-+.
T Consensus 646 ------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~ 718 (963)
T 4ady_A 646 ------QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMN 718 (963)
T ss_dssp ------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHT
T ss_pred ------HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence 45788899999888899999999999999864433211 22334444444 356778888888887653
No 68
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.13 E-value=6.9e-05 Score=85.72 Aligned_cols=260 Identities=14% Similarity=0.140 Sum_probs=162.2
Q ss_pred Hcccc--cCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcchHHHHHHc
Q 006250 154 QIAIL--HTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIVNA 231 (654)
Q Consensus 154 lV~lL--~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~~iv~~ 231 (654)
+.+.| .+.++.+|..|+.++.++...+++ .+-..+.++.|.++|.+.++.++..|..+|..++..... . -.
T Consensus 151 v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~---~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~--~--~~ 223 (621)
T 2vgl_A 151 IPKILVAGDTMDSVKQSAALCLLRLYRTSPD---LVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE--E--FK 223 (621)
T ss_dssp HHHHHHCSSSCHHHHHHHHHHHHHHHHHCGG---GCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH--H--HT
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHhChh---hcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH--H--HH
Confidence 47788 788999999999999999865443 222258899999999998999999999999999864221 1 12
Q ss_pred CchHHHHHhhc----CC-------------ChhHHHHHHHHHHHHhcC-ChhhHHHHHhCCcHHHHHHhhccCc---hhh
Q 006250 232 GVCSTFAKNLK----DG-------------HMKVQSVVAWAVSELASN-HPKCQDHFAQNNIVRFLVSHLAFET---VQE 290 (654)
Q Consensus 232 GaIp~Lv~LL~----s~-------------~~~vq~~Aa~aL~nLa~~-~~~~r~~i~~~g~I~~LV~LL~~~~---~~~ 290 (654)
..+|.+++.|. .+ ++-.|......|..++.. +++.++.+.+ .++.++..+.... ...
T Consensus 224 ~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~ 301 (621)
T 2vgl_A 224 TSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQ 301 (621)
T ss_dssp THHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHH
T ss_pred HHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCccccccc
Confidence 34566665543 22 577888888888888762 4555554443 3344443321110 001
Q ss_pred h--hHHHHHhhccchhhhHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccc
Q 006250 291 H--SKYAIASKQNISSLHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQ 368 (654)
Q Consensus 291 ~--~~~al~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~ 368 (654)
| +.+++.-- ++..++.... +++-+...+
T Consensus 302 ~~n~~~aVl~e----a~~~i~~l~~------------------------------~~~~~~~~~---------------- 331 (621)
T 2vgl_A 302 HSNAKNAVLFE----AISLIIHHDS------------------------------EPNLLVRAC---------------- 331 (621)
T ss_dssp HHHHHHHHHHH----HHHHHHHHCC------------------------------CHHHHHHHH----------------
T ss_pred ccchHHHHHHH----HHHHHHhcCC------------------------------cHHHHHHHH----------------
Confidence 1 11222211 2222221110 000011110
Q ss_pred cCCcccccccCCCCCCccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhc-
Q 006250 369 AQPDSHMYAMQPNHHNQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLE- 447 (654)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~- 447 (654)
+.+..+++ ..||+ +|-.|.++|..++..++. ...+ ..-...+...|+
T Consensus 332 ---------------~~L~~~L~----------~~~~n----iry~aL~~l~~l~~~~~~-~~~~--~~~~~~i~~~L~~ 379 (621)
T 2vgl_A 332 ---------------NQLGQFLQ----------HRETN----LRYLALESMCTLASSEFS-HEAV--KTHIETVINALKT 379 (621)
T ss_dssp ---------------HHHHHHSS----------CSCHH----HHHHHHHHHHHHTTCTTT-HHHH--HTTHHHHHHHHTT
T ss_pred ---------------HHHHHHhc----------CCCcc----hHHHHHHHHHHHHhccCc-HHHH--HHHHHHHHHHhcc
Confidence 01122211 23453 667899999999876531 1112 245666777788
Q ss_pred cCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcch
Q 006250 448 KGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFR 520 (654)
Q Consensus 448 ~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~ 520 (654)
+.+..||..+...|..++. ++| ...++..|...+.+.|++.+..++.+||.|+..|.
T Consensus 380 d~d~~Ir~~aL~lL~~l~~--~~N--------------v~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~ 436 (621)
T 2vgl_A 380 ERDVSVRQRAVDLLYAMCD--RSN--------------AQQIVAEMLSYLETADYSIREEIVLKVAILAEKYA 436 (621)
T ss_dssp CCCHHHHHHHHHHHHHHCC--HHH--------------HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHhHHHHHHHHHHHHcC--hhh--------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 8999999999999988852 211 25678889999998889999999999999997554
No 69
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.11 E-value=6.9e-06 Score=74.21 Aligned_cols=89 Identities=12% Similarity=0.108 Sum_probs=76.8
Q ss_pred cHHHHHHhhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhh
Q 006250 438 ALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLAR 517 (654)
Q Consensus 438 aL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~ 517 (654)
.++.|..+|++.+..||..|+|+|.++.. +..++.|++++++.++.++..++++||.+..
T Consensus 43 ~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------------------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~ 102 (131)
T 1te4_A 43 AFEPLLESLSNEDWRIRGAAAWIIGNFQD--------------------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG 102 (131)
T ss_dssp THHHHHHGGGCSCHHHHHHHHHHHGGGCS--------------------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 36889999999999999999999977631 2356888899999999999999999999872
Q ss_pred cchhhhhccHHHHHHHhccCCHHHHHHHHHHHHhc
Q 006250 518 TFRATETRIIGPLVNLLDEREPEVIMEATVALNKF 552 (654)
Q Consensus 518 ~~~~~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~ 552 (654)
...++.|+.+|++.+..|+..|++||.++
T Consensus 103 ------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 103 ------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp ------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred ------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 35899999999999999999999999864
No 70
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.02 E-value=0.00082 Score=82.45 Aligned_cols=309 Identities=11% Similarity=0.085 Sum_probs=184.9
Q ss_pred HHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCC--c---------------chHH
Q 006250 164 EEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRD--A---------------ESVE 226 (654)
Q Consensus 164 ~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~--~---------------e~~~ 226 (654)
.+|..|+.+|..++...++.-..++ ...+|.|+..+++.+..++..++.+|..+... . ....
T Consensus 348 ~vR~~A~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (1230)
T 1u6g_C 348 KVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLT 426 (1230)
T ss_dssp HHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHH
T ss_pred HHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHH
Confidence 4588899999998864332222232 45788888888888889999999988877642 1 0011
Q ss_pred HH--HHcCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchh
Q 006250 227 QI--VNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISS 304 (654)
Q Consensus 227 ~i--v~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~ 304 (654)
.+ .-...+|.+.+.|++.+..++..++.+|+.++...+..-.... ...++.++.+|....
T Consensus 427 ~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l-~~ll~~l~~~L~d~~----------------- 488 (1230)
T 1u6g_C 427 MLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHI-PVLVPGIIFSLNDKS----------------- 488 (1230)
T ss_dssp HHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGH-HHHHHHHHHHTTCSS-----------------
T ss_pred HHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHH-HHHHHHHHHHHcCCC-----------------
Confidence 11 1123456667778888888998888999988763321100000 012233333332210
Q ss_pred hhHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCC
Q 006250 305 LHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHN 384 (654)
Q Consensus 305 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (654)
T Consensus 489 -------------------------------------------------------------------------------- 488 (1230)
T 1u6g_C 489 -------------------------------------------------------------------------------- 488 (1230)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcC-ChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHH
Q 006250 385 QHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKG-NLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALME 463 (654)
Q Consensus 385 ~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~g-n~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~ 463 (654)
.++ .++..++.++..+... .++...... ...++.|...+++....++..+..++.+
T Consensus 489 ------------------~~~----~v~~~a~~~l~~~~~~~~~~~~~~~l-~~llp~L~~~l~d~~~~v~~~al~~l~~ 545 (1230)
T 1u6g_C 489 ------------------SSS----NLKIDALSCLYVILCNHSPQVFHPHV-QALVPPVVACVGDPFYKITSEALLVTQQ 545 (1230)
T ss_dssp ------------------SCH----HHHHHHHHHHHHHHHSSCGGGGHHHH-TTTHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred ------------------Ccc----hHHHHHHHHHHHHHHhCCHHHHHhHH-HHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 001 2345566666666432 121111111 2578888888888888888889889888
Q ss_pred HHhhcccChHhhhhccCCCchHHHHHHHHHHHHh--hhcCcchhhHHHHHHHHhhhcchhhhh----ccHHHHHHHhccC
Q 006250 464 ITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIV--EKADSDLLIPSIRAIGNLARTFRATET----RIIGPLVNLLDER 537 (654)
Q Consensus 464 Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll--~~~~~~l~~~~~~alg~la~~~~~~e~----~~I~pLV~lL~~~ 537 (654)
++..-+... ...-....|-...+++.++..+ .+.+++++..++.++|.++..+...-. .+++.|.+.|.+.
T Consensus 546 l~~~~~~~~---~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e 622 (1230)
T 1u6g_C 546 LVKVIRPLD---QPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNE 622 (1230)
T ss_dssp HHHHHCCSS---SCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSS
T ss_pred HHHHhcCcc---cccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccc
Confidence 875433200 0000112244566778888888 445578999999999999986554222 3455555555543
Q ss_pred CHHHHHHHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhccCCcchHHHHHHHHHHHHhCCC
Q 006250 538 EPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIAIKQP 603 (654)
Q Consensus 538 ~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~ia~~~~ 603 (654)
..+..++.+++.++..... .+-... -...++.|...+...+..+...++.+|..++.+.+
T Consensus 623 --~~r~~~~~al~~i~~~~~~--~~~~~~--~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~ 682 (1230)
T 1u6g_C 623 --ITRLTTVKALTLIAGSPLK--IDLRPV--LGEGVPILASFLRKNQRALKLGTLSALDILIKNYS 682 (1230)
T ss_dssp --SHHHHHHHHHHHHTTCSSC--CCCHHH--HHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCC
T ss_pred --hhHHHHHHHHHHHHhCccc--cchHHH--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccc
Confidence 3677899999887632110 010111 12346778888887777677779999999877665
No 71
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.87 E-value=0.0002 Score=70.86 Aligned_cols=150 Identities=21% Similarity=0.273 Sum_probs=117.7
Q ss_pred CcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhh
Q 006250 437 RALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLA 516 (654)
Q Consensus 437 gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la 516 (654)
+.+..|..||...+..+|.++-.+|.++-..... .+++ ...+.+.+-+++++.+.|+.+...|+++|+.|-
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~--~l~~-------~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LL 103 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADS--DLRM-------MVLERHLDVFINALSQENEKVTIKALRALGYLV 103 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCH--HHHH-------HHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccc--cccH-------HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 5888899999999999999999999999765422 2332 334678899999999999999999999999887
Q ss_pred hcchhhh---hccHHHHHHHhccCCHHHHHHHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhccCCcchHHHHHH
Q 006250 517 RTFRATE---TRIIGPLVNLLDEREPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALT 593 (654)
Q Consensus 517 ~~~~~~e---~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~ 593 (654)
...+-++ ..++..|++++.+++.-...||+..|+++- .-+ . .+-+ +..|.+|+.+.+..+|..|+.
T Consensus 104 e~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklk-v~~-~----~~~V-----~~~l~sLl~Skd~~vK~agl~ 172 (265)
T 3b2a_A 104 KDVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQ-PLE-D----SKLV-----RTYINELVVSPDLYTKVAGFC 172 (265)
T ss_dssp TTCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCC-BSC-C----CHHH-----HHHHHHHHTCSSHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCC-ccc-c----hHHH-----HHHHHHHHhCCChhHHHHHHH
Confidence 6544332 246889999999999999999999999993 221 1 2233 457889997778888999999
Q ss_pred HHHHHHhCCCchH
Q 006250 594 LLCYIAIKQPESK 606 (654)
Q Consensus 594 ~L~~ia~~~~~~~ 606 (654)
+|.+++...+|.+
T Consensus 173 ~L~eia~~S~D~~ 185 (265)
T 3b2a_A 173 LFLNMLNSSADSG 185 (265)
T ss_dssp HHHHHGGGCSSCC
T ss_pred HHHHhhcccCCHH
Confidence 9999988776644
No 72
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.86 E-value=0.00013 Score=72.65 Aligned_cols=177 Identities=13% Similarity=0.109 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhh-ccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHH
Q 006250 410 QMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLL-EKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKA 488 (654)
Q Consensus 410 ~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL-~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~ 488 (654)
+.+..|+.+|..+..|++...... -...++.|.++| ++.+..|+..|+.++..++..-.. . | .+-...
T Consensus 30 ~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~--~-----~---~~~~~~ 98 (242)
T 2qk2_A 30 TLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAK--R-----F---SNYASA 98 (242)
T ss_dssp HHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGG--G-----G---HHHHHH
T ss_pred HHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhh--h-----H---HHHHHH
Confidence 356789999999988743211000 024577788889 489999999999999999854321 1 2 234566
Q ss_pred HHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhhhhccHHHHHHHhccCCHHHHHHHHHHHHhcccc-CC-CCCHHHHHH
Q 006250 489 VLEQLLHIVEKADSDLLIPSIRAIGNLARTFRATETRIIGPLVNLLDEREPEVIMEATVALNKFATT-EN-YLSETHSKA 566 (654)
Q Consensus 489 vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a~~-~n-~~~~~~~~~ 566 (654)
+++.|+..+.+.+..++..+..+|.++.....- ..++|.|...|+++++.++.++...|..+... +. .....+..
T Consensus 99 ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~--~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~- 175 (242)
T 2qk2_A 99 CVPSLLEKFKEKKPNVVTALREAIDAIYASTSL--EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLK- 175 (242)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHH-
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHH-
Confidence 889999999988889999999999999876542 24789999999999999999999999986422 11 01112222
Q ss_pred HHHCCCHHHHHHhhccCCcchHHHHHHHHHHHHhCCCc
Q 006250 567 IINAGGVKHLIQLVYFGEQMIQIPALTLLCYIAIKQPE 604 (654)
Q Consensus 567 Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~ia~~~~~ 604 (654)
.-++.|+.+|...+..+...|..+|..++...|+
T Consensus 176 ----~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~ 209 (242)
T 2qk2_A 176 ----LLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGD 209 (242)
T ss_dssp ----HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCH
T ss_pred ----HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCH
Confidence 2468999999877777777899999999877774
No 73
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.85 E-value=0.0034 Score=59.93 Aligned_cols=158 Identities=16% Similarity=0.205 Sum_probs=110.4
Q ss_pred HHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHH
Q 006250 414 MAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQL 493 (654)
Q Consensus 414 ~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L 493 (654)
.-++|+|.+++-+++..+ +.+|.+-.-.+-|++.+|.|-+.+|.+|+. .||++- ..++.-+
T Consensus 89 eIa~a~G~la~i~Pe~v~-----~vVp~lfanyrigd~kikIn~~yaLeeIar---anP~l~-----------~~v~rdi 149 (253)
T 2db0_A 89 EIAKAFGQMAKEKPELVK-----SMIPVLFANYRIGDEKTKINVSYALEEIAK---ANPMLM-----------ASIVRDF 149 (253)
T ss_dssp HHHHHHHHHHHHCHHHHH-----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHH---HCHHHH-----------HHHHHHH
T ss_pred HHHHHHhHHHHhCHHHHH-----hhHHHHHHHHhcCCccceecHHHHHHHHHH---hChHHH-----------HHHHHHH
Confidence 467889999988887766 456777777888999999999999999974 356554 3577888
Q ss_pred HHHhhhcCcchhhHHHHHHHHhhhcchhhhhccHHHHHHHhccCCHHHHHHHHHHHHhccccCCCCCHHHHHHHHHCCCH
Q 006250 494 LHIVEKADSDLLIPSIRAIGNLARTFRATETRIIGPLVNLLDEREPEVIMEATVALNKFATTENYLSETHSKAIINAGGV 573 (654)
Q Consensus 494 ~~ll~~~~~~l~~~~~~alg~la~~~~~~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi 573 (654)
..++++.|..-+..+..=|+.++......-+-..|.|..||.+++.-|+..|+.+|.++|... +.-.+.|.
T Consensus 150 ~smltskd~~Dkl~aLnFi~alGen~~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~n----pklRkii~----- 220 (253)
T 2db0_A 150 MSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLN----DKLRKVVI----- 220 (253)
T ss_dssp HHHTSCSSHHHHHHHHHHHHTCCTTTHHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSC----HHHHHHHH-----
T ss_pred HHHhcCCChHHHHHHHHHHHHHhccCccccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcC----HHHHHHHH-----
Confidence 899998886666666666666665443333346889999999999999999999999998432 33222221
Q ss_pred HHHHHhhccCCcchHHHHHHHHHHHHh
Q 006250 574 KHLIQLVYFGEQMIQIPALTLLCYIAI 600 (654)
Q Consensus 574 ~~Lv~LL~~~~~~~q~~Al~~L~~ia~ 600 (654)
.. ++=+...++.+|...-.+|..+++
T Consensus 221 ~k-l~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 221 KR-LEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp HH-HHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred HH-HHHhcCcHHHHHHHHHHHHHHHHH
Confidence 12 222333333466656666666643
No 74
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.77 E-value=0.00016 Score=76.84 Aligned_cols=248 Identities=13% Similarity=0.050 Sum_probs=126.8
Q ss_pred hhhhHHHHcccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcchHH
Q 006250 147 ILCLIWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVE 226 (654)
Q Consensus 147 i~~~v~~lV~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~ 226 (654)
+...+..+.+-++++++-.|-.|.++|+++... +..+. ..+++.+.|.+.++.+++.|+.+..+|.... .+
T Consensus 102 ~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~--~m~~~-----l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~--pe 172 (355)
T 3tjz_B 102 VIIVTSSLTKDMTGKEDSYRGPAVRALCQITDS--TMLQA-----IERYMKQAIVDKVPSVSSSALVSSLHLLKCS--FD 172 (355)
T ss_dssp GGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--TTHHH-----HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC--HH
T ss_pred HHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--HHHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHHHhccC--HH
Confidence 335566667888889999999999999998743 33332 4567778888888999999999988887542 11
Q ss_pred HHHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhh
Q 006250 227 QIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLH 306 (654)
Q Consensus 227 ~iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~ 306 (654)
+++ +.++.+-+++.+.++-++.+|..+|..+..++.. ++..|+..|..+.. ...|+...
T Consensus 173 -~v~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~---------a~~kLv~~l~~~~l--~~~~~q~~-------- 231 (355)
T 3tjz_B 173 -VVK-RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL---------AVSKMISKFTRHGL--KSPFAYCM-------- 231 (355)
T ss_dssp -HHH-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH---------HHHHHHHHHHSSCC--SCHHHHHH--------
T ss_pred -HHH-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH---------HHHHHHHHHhcCCC--cChHHHHH--------
Confidence 222 5788888889888888888888888888874421 44555555543211 01121110
Q ss_pred HHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCcc
Q 006250 307 SALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQH 386 (654)
Q Consensus 307 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (654)
+
T Consensus 232 -l------------------------------------------------------------------------------ 232 (355)
T 3tjz_B 232 -M------------------------------------------------------------------------------ 232 (355)
T ss_dssp -H------------------------------------------------------------------------------
T ss_pred -H------------------------------------------------------------------------------
Confidence 0
Q ss_pred chhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCC-hHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHH
Q 006250 387 QDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGN-LSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEIT 465 (654)
Q Consensus 387 ~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn-~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Ia 465 (654)
.+.+..+..++ ++ .....+..+...|++..+.|.++|+.+|..+.
T Consensus 233 -----------------------------lr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~ 278 (355)
T 3tjz_B 233 -----------------------------IRVASRQLEDEDGS-----RDSPLFDFIESCLRNKHEMVVYEAASAIVNLP 278 (355)
T ss_dssp -----------------------------HHHHTCC----------------------CCCCCSSHHHHHHHHHHHTC--
T ss_pred -----------------------------HHHHHHhccccchh-----hHHHHHHHHHHHHcCCChHHHHHHHHHHHhcc
Confidence 11111111111 10 01234555666788889999999999998885
Q ss_pred hhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhhhhccHHHHHHHhccCCHHHHHHH
Q 006250 466 AVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRATETRIIGPLVNLLDEREPEVIMEA 545 (654)
Q Consensus 466 a~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~e~~~I~pLV~lL~~~~~~v~~eA 545 (654)
.. ...+.. .++..|..++.+.+++++..+.+.|..++...+..=.+.-.-+.+++++++.-+..-|
T Consensus 279 ~~---~~~~~~-----------~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~~n~~ie~li~d~n~sI~t~A 344 (355)
T 3tjz_B 279 GC---SAKELA-----------PAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACNLDLENLVTDANRSIATLA 344 (355)
T ss_dssp -----------------------CCCTHHHHHHSSSSSSHHHHHHCC---------------------------------
T ss_pred CC---CHHHHH-----------HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHccCCcHhHHHHH
Confidence 31 112211 1235677788888999999999999998876665333345567788888888776666
Q ss_pred HHHHHh
Q 006250 546 TVALNK 551 (654)
Q Consensus 546 a~AL~~ 551 (654)
.-.|-|
T Consensus 345 ittllk 350 (355)
T 3tjz_B 345 ITTLLK 350 (355)
T ss_dssp ------
T ss_pred HHHhhh
Confidence 655554
No 75
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.60 E-value=0.0027 Score=69.44 Aligned_cols=131 Identities=20% Similarity=0.110 Sum_probs=93.1
Q ss_pred HcccccCC-CHHHHHHHHHHHHHhccCCchhHHHHHhcCC--HHHHHHhhcc---------------C--CHHHHHHHHH
Q 006250 154 QIAILHTG-SMEEKCDAAASLVSLARDNDRYGKLIIEEGG--VPPLLKLAYE---------------G--ELEGQENAAR 213 (654)
Q Consensus 154 lV~lL~s~-~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~--Ip~LV~LL~s---------------~--~~~~q~~Aa~ 213 (654)
++..|+.. +...+.-++.+|..|.+. +++|..+.+.++ +|+++.+++. + ...+|.++.-
T Consensus 172 ~~~~L~~~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll 250 (480)
T 1ho8_A 172 LINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLL 250 (480)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHH
T ss_pred HHHHhccccCCchHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHH
Confidence 45556552 345556788999999876 889999987654 7888765541 1 1456889999
Q ss_pred HHHHhcCCcchHHHHHHcCch--HHHHHhhcC-CChhHHHHHHHHHHHHhcCChhh-----HHHHHhCCcHHHHHHhhcc
Q 006250 214 AIGLLGRDAESVEQIVNAGVC--STFAKNLKD-GHMKVQSVVAWAVSELASNHPKC-----QDHFAQNNIVRFLVSHLAF 285 (654)
Q Consensus 214 AL~nLa~~~e~~~~iv~~GaI--p~Lv~LL~s-~~~~vq~~Aa~aL~nLa~~~~~~-----r~~i~~~g~I~~LV~LL~~ 285 (654)
++|-|+..++..+.+...+.+ +.|+++++. ..+++-..+..+|.||....+.. .+.+...++ ++++..|..
T Consensus 251 ~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~ 329 (480)
T 1ho8_A 251 LIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSE 329 (480)
T ss_dssp HHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHS
T ss_pred HHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhh
Confidence 999999998888888877754 778888875 56889999999999998754221 223333344 567777765
Q ss_pred C
Q 006250 286 E 286 (654)
Q Consensus 286 ~ 286 (654)
.
T Consensus 330 r 330 (480)
T 1ho8_A 330 R 330 (480)
T ss_dssp S
T ss_pred C
Confidence 4
No 76
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.51 E-value=0.01 Score=56.80 Aligned_cols=214 Identities=17% Similarity=0.225 Sum_probs=147.2
Q ss_pred hcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCC-cchHHHHHHcCchHHHHHhh-cCCChhHHHHHHHHHHHHhcCChhh
Q 006250 189 EEGGVPPLLKLAYEGELEGQENAARAIGLLGRD-AESVEQIVNAGVCSTFAKNL-KDGHMKVQSVVAWAVSELASNHPKC 266 (654)
Q Consensus 189 e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~-~e~~~~iv~~GaIp~Lv~LL-~s~~~~vq~~Aa~aL~nLa~~~~~~ 266 (654)
+...+..++++|..+--.+|+||...|.+++.. ++-...+ +.-|+-++ +|....+-...+.+++.++.-.|+
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe- 103 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE- 103 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH-
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH-
Confidence 445788889999887778999999999999975 4433322 22344444 455666656678899999986665
Q ss_pred HHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCc
Q 006250 267 QDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANS 346 (654)
Q Consensus 267 r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 346 (654)
.|.++|..|... |
T Consensus 104 --------~v~~vVp~lfan-------y---------------------------------------------------- 116 (253)
T 2db0_A 104 --------LVKSMIPVLFAN-------Y---------------------------------------------------- 116 (253)
T ss_dssp --------HHHHHHHHHHHH-------S----------------------------------------------------
T ss_pred --------HHHhhHHHHHHH-------H----------------------------------------------------
Confidence 345555554210 0
Q ss_pred chhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCC
Q 006250 347 SISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGN 426 (654)
Q Consensus 347 ~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn 426 (654)
| .-|| ++|-+-+.||+.+++.|
T Consensus 117 -----------------------------------------------------r-igd~----kikIn~~yaLeeIaran 138 (253)
T 2db0_A 117 -----------------------------------------------------R-IGDE----KTKINVSYALEEIAKAN 138 (253)
T ss_dssp -----------------------------------------------------C-CCSH----HHHHHHHHHHHHHHHHC
T ss_pred -----------------------------------------------------h-cCCc----cceecHHHHHHHHHHhC
Confidence 0 0122 56778889999999999
Q ss_pred hHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhh
Q 006250 427 LSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLI 506 (654)
Q Consensus 427 ~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~ 506 (654)
+..-..|. .-+..+|.+++.. .=-.||..|++..++.+. .-.| -.+.|..++...|.-++.
T Consensus 139 P~l~~~v~-----rdi~smltskd~~---Dkl~aLnFi~alGen~~~-------yv~P----fLprL~aLL~D~deiVRa 199 (253)
T 2db0_A 139 PMLMASIV-----RDFMSMLSSKNRE---DKLTALNFIEAMGENSFK-------YVNP----FLPRIINLLHDGDEIVRA 199 (253)
T ss_dssp HHHHHHHH-----HHHHHHTSCSSHH---HHHHHHHHHHTCCTTTHH-------HHGG----GHHHHHGGGGCSSHHHHH
T ss_pred hHHHHHHH-----HHHHHHhcCCChH---HHHHHHHHHHHHhccCcc-------ccCc----chHHHHHHHcCcchhhhH
Confidence 87766554 4567788877733 334466667776665422 1112 245678888888888999
Q ss_pred HHHHHHHHhhhcchhhhhccHHHHHHHhccCCHHHHHHHHHHHHhcc
Q 006250 507 PSIRAIGNLARTFRATETRIIGPLVNLLDEREPEVIMEATVALNKFA 553 (654)
Q Consensus 507 ~~~~alg~la~~~~~~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a 553 (654)
.++.+|+++|+.-+... .+|.--+.=++++...|.+..-.+|++++
T Consensus 200 SaVEtL~~lA~~npklR-kii~~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 200 SAVEALVHLATLNDKLR-KVVIKRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp HHHHHHHHHHTSCHHHH-HHHHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCHHHH-HHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 99999999998766543 35656667789999999999999999886
No 77
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.35 E-value=0.0015 Score=64.75 Aligned_cols=127 Identities=19% Similarity=0.155 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHH
Q 006250 410 QMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAV 489 (654)
Q Consensus 410 ~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~v 489 (654)
.++..|+.+|+.|+++-...-.. .-...++++...+.+++..|+..++.||.++..... ...+
T Consensus 72 ~V~~~a~~~l~~la~~l~~~~~~-~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~----------------~~~l 134 (242)
T 2qk2_A 72 VLVAMAGKCLALLAKGLAKRFSN-YASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS----------------LEAQ 134 (242)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGHH-HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC----------------HHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC----------------HHHH
Confidence 36678999999999742211111 112478999999999999999999999999863211 1457
Q ss_pred HHHHHHHhhhcCcchhhHHHHHHHHhhhcchh------hhhccHHHHHHHhccCCHHHHHHHHHHHHhcc
Q 006250 490 LEQLLHIVEKADSDLLIPSIRAIGNLARTFRA------TETRIIGPLVNLLDEREPEVIMEATVALNKFA 553 (654)
Q Consensus 490 v~~L~~ll~~~~~~l~~~~~~alg~la~~~~~------~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a 553 (654)
++.|...+++.++.++..++..|+.+...+.. .-..++|.|+.+|.+++.+|+..|..+|+.++
T Consensus 135 l~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~ 204 (242)
T 2qk2_A 135 QESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLI 204 (242)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 78899999988899999999999997655421 11257999999999999999999999999885
No 78
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.27 E-value=0.0076 Score=59.76 Aligned_cols=176 Identities=17% Similarity=0.101 Sum_probs=133.7
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHH
Q 006250 410 QMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAV 489 (654)
Q Consensus 410 ~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~v 489 (654)
.++..|..+|.++-++-+...+...-.+.++.++.++++.++-|--+|..+|..|-.+-.=.+. .-..+
T Consensus 48 ~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~-----------~y~Kl 116 (265)
T 3b2a_A 48 TTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK-----------TFLKA 116 (265)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH-----------HHHHH
T ss_pred HHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH-----------HHHHH
Confidence 3678999999999997666667767778999999999999999999999999988644321111 11336
Q ss_pred HHHHHHHhhhcCcchhhHHHHHHHHhhhcchhhhhccHHHHHHHhccCCHHHHHHHHHHHHhccccCCCCCHHHHHHHHH
Q 006250 490 LEQLLHIVEKADSDLLIPSIRAIGNLARTFRATETRIIGPLVNLLDEREPEVIMEATVALNKFATTENYLSETHSKAIIN 569 (654)
Q Consensus 490 v~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~ 569 (654)
.+.|..+++++++-+...++..+|.+.-+... .+++.-|++++.+.+.+++..|-.+|.+.++-.. .+++.+.|.
T Consensus 117 ~~aL~dlik~~~~il~~eaae~Lgklkv~~~~--~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~--D~~i~~~I~- 191 (265)
T 3b2a_A 117 AKTLVSLLESPDDMMRIETIDVLSKLQPLEDS--KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA--DSGHLTLIL- 191 (265)
T ss_dssp HHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS--SCCCGGGTT-
T ss_pred HHHHHHHhcCCCchHHHHHHHHhCcCCcccch--HHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC--CHHHHHHHH-
Confidence 78899999988899999999999999433322 3588899999999999999999999999874221 123444442
Q ss_pred CCCHHHHHHhhccCCcchHHHHHHHHHHHHhCCCchH
Q 006250 570 AGGVKHLIQLVYFGEQMIQIPALTLLCYIAIKQPESK 606 (654)
Q Consensus 570 ~ggi~~Lv~LL~~~~~~~q~~Al~~L~~ia~~~~~~~ 606 (654)
.+ +-.||++.|+.++..|+.+|..+ ++.|-.+
T Consensus 192 -~e---I~elL~~eD~~l~e~aLd~Le~i-ls~pi~~ 223 (265)
T 3b2a_A 192 -DE---IPSLLQNDNEFIVELALDVLEKA-LSFPLLE 223 (265)
T ss_dssp -TT---HHHHHTCSCHHHHHHHHHHHHHH-TTSCCCS
T ss_pred -HH---HHHHHcCCCHHHHHHHHHHHHHH-HcCcccH
Confidence 23 44567788887888899999999 5555543
No 79
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.26 E-value=0.014 Score=61.79 Aligned_cols=247 Identities=14% Similarity=0.124 Sum_probs=147.2
Q ss_pred CHHHHHHhhccCCHHHHHHHHHHHHHhcCCcchHHHHHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHH
Q 006250 192 GVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFA 271 (654)
Q Consensus 192 ~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~~iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~ 271 (654)
..+..++++.+.+...++-.=-++.+++..++. .+ =++..|.+=++++++-++..|..+|++|... +
T Consensus 69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e--~i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~--~------ 135 (355)
T 3tjz_B 69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAED--VI---IVTSSLTKDMTGKEDSYRGPAVRALCQITDS--T------ 135 (355)
T ss_dssp HHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSC--GG---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--T------
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHH--HH---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--H------
Confidence 345668899999999998877777787765332 12 3678888889999999999999999999862 2
Q ss_pred hCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhH
Q 006250 272 QNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNV 351 (654)
Q Consensus 272 ~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~v 351 (654)
.++.+...++.. +.
T Consensus 136 ---m~~~l~~~lk~~---------L~------------------------------------------------------ 149 (355)
T 3tjz_B 136 ---MLQAIERYMKQA---------IV------------------------------------------------------ 149 (355)
T ss_dssp ---THHHHHHHHHHH---------HT------------------------------------------------------
T ss_pred ---HHHHHHHHHHHH---------cC------------------------------------------------------
Confidence 333343333210 00
Q ss_pred HhhhhhhcccCCCcccccCCcccccccCCCCCCccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHH
Q 006250 352 VTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICR 431 (654)
Q Consensus 352 v~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~ 431 (654)
+.+| +++..|+-+..+|...+++..+
T Consensus 150 --------------------------------------------------d~~p----yVRk~A~l~~~kL~~~~pe~v~ 175 (355)
T 3tjz_B 150 --------------------------------------------------DKVP----SVSSSALVSSLHLLKCSFDVVK 175 (355)
T ss_dssp --------------------------------------------------CSSH----HHHHHHHHHHHHHTTTCHHHHH
T ss_pred --------------------------------------------------CCCH----HHHHHHHHHHHHHhccCHHHHH
Confidence 1123 3456778888888877776544
Q ss_pred HHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhc---CcchhhHH
Q 006250 432 NLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKA---DSDLLIPS 508 (654)
Q Consensus 432 ~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~---~~~l~~~~ 508 (654)
+.+.-+-.++.+.++.|+++|..+|.+|... +. ..+..|+.-+... ++-.+..-
T Consensus 176 -----~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~---d~---------------~a~~kLv~~l~~~~l~~~~~q~~l 232 (355)
T 3tjz_B 176 -----RWVNEAQEAASSDNIMVQYHALGLLYHVRKN---DR---------------LAVSKMISKFTRHGLKSPFAYCMM 232 (355)
T ss_dssp -----TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT---CH---------------HHHHHHHHHHHSSCCSCHHHHHHH
T ss_pred -----HHHHHHHHHhcCCCccHHHHHHHHHHHHHhh---ch---------------HHHHHHHHHHhcCCCcChHHHHHH
Confidence 6777888889999999999999999998631 21 1122333333322 12233334
Q ss_pred HHHHHHhhhcc-hhhhhccHHHHHHHhccCCHHHHHHHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhccCCcch
Q 006250 509 IRAIGNLARTF-RATETRIIGPLVNLLDEREPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMI 587 (654)
Q Consensus 509 ~~alg~la~~~-~~~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~ 587 (654)
++.++.+...- ......+++.|..+|++...-|..||+.+|..+.... ...+ .-++.+|..+|.++++.+
T Consensus 233 lr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~-------~~~~--~~a~~~L~~fLss~d~ni 303 (355)
T 3tjz_B 233 IRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCS-------AKEL--APAVSVLQLFCSSPKAAL 303 (355)
T ss_dssp HHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC--------------------CCCTHHHHHHSSSSSS
T ss_pred HHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCC-------HHHH--HHHHHHHHHHHcCCCchH
Confidence 44444443322 1112357888888899999999999999999985311 1111 345678888899899888
Q ss_pred HHHHHHHHHHHHhCCC
Q 006250 588 QIPALTLLCYIAIKQP 603 (654)
Q Consensus 588 q~~Al~~L~~ia~~~~ 603 (654)
|--|+..|-.++..-|
T Consensus 304 ryvaLr~L~~l~~~~P 319 (355)
T 3tjz_B 304 RYAAVRTLNKVAMKHP 319 (355)
T ss_dssp HHHHHHCC--------
T ss_pred HHHHHHHHHHHHHHCc
Confidence 8888888877755444
No 80
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.11 E-value=0.0049 Score=62.03 Aligned_cols=184 Identities=13% Similarity=0.167 Sum_probs=126.2
Q ss_pred HHHHHHHHHHH-hhcCChHHHHHHHh-hCcHHHHHHhh-ccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCc-hHH
Q 006250 411 MKAMAARALWK-LSKGNLSICRNLTE-SRALLCFAVLL-EKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTS-TAA 486 (654)
Q Consensus 411 lk~~Aa~AL~~-La~gn~~~~~~i~e-~gaL~~L~~LL-~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s-~~~ 486 (654)
-+..|..+|.. +..|++.......+ ...+..|.+.+ ++.+..|+..|+.+|..|+.+-.. . .| . +-.
T Consensus 32 eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~-----~-~f---~~~y~ 102 (249)
T 2qk1_A 32 DRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKT-----P-GF---SKDYV 102 (249)
T ss_dssp HHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCT-----T-TS---CHHHH
T ss_pred HHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc-----c-cc---cHHHH
Confidence 35678889999 88765432100011 13466778888 788899999999999999844320 1 12 2 344
Q ss_pred HHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcch-----hhhhccHHHHHHHhccCCHHHHHHHHHHHHhccccCCCCCH
Q 006250 487 KAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFR-----ATETRIIGPLVNLLDEREPEVIMEATVALNKFATTENYLSE 561 (654)
Q Consensus 487 ~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~-----~~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a~~~n~~~~ 561 (654)
..+++.|+..+++..+.++..+..++-+++.... ..-..+++.|+..|+++++.++.++...|+.++..... .+
T Consensus 103 ~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~-~~ 181 (249)
T 2qk1_A 103 SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD-GY 181 (249)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS-CS
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC-cc
Confidence 6688888888887778899988888888887541 10124788999999999999999999999998743221 01
Q ss_pred HHHHHHHHCCCHHHHHHhhccCCcchHHHHHHHHHHHHhCCCc
Q 006250 562 THSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIAIKQPE 604 (654)
Q Consensus 562 ~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~ia~~~~~ 604 (654)
+.-...+...-++.|++++...++.+...|..+|..+...+|+
T Consensus 182 ~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~ 224 (249)
T 2qk1_A 182 STLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGM 224 (249)
T ss_dssp HHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCS
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCH
Confidence 1111111134578889999777776777788888888777775
No 81
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.90 E-value=0.06 Score=64.15 Aligned_cols=121 Identities=15% Similarity=0.156 Sum_probs=75.9
Q ss_pred HcccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCc----chHHHHH
Q 006250 154 QIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDA----ESVEQIV 229 (654)
Q Consensus 154 lV~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~----e~~~~iv 229 (654)
+++.+...+...+..|+..|.++...+... ..+..+.+..|.+.++..... +.|+.++..|+... ..-..++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~ 94 (986)
T 2iw3_A 19 LFQKLSVATADNRHEIASEVASFLNGNIIE--HDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV 94 (986)
T ss_dssp HHHHHTTCCTTTHHHHHHHHHHHHTSSCSS--SSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH
T ss_pred HHhhccccchhHHHHHHHHHHHHHhccccc--cccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH
Confidence 355565544555667777888875432111 112236777888888765444 99999999999542 1212222
Q ss_pred HcCchHHHHHhhcCCChhHHHHHHHHHHHHhcC-ChhhHHHHHhCCcHHHHHHhhcc
Q 006250 230 NAGVCSTFAKNLKDGHMKVQSVVAWAVSELASN-HPKCQDHFAQNNIVRFLVSHLAF 285 (654)
Q Consensus 230 ~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~-~~~~r~~i~~~g~I~~LV~LL~~ 285 (654)
+-+|.+...+.+....|+..|..++..|... +++... ..+|.|+..|.+
T Consensus 95 --~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~-----~~~~~~~~~~~~ 144 (986)
T 2iw3_A 95 --QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIK-----ALLPHLTNAIVE 144 (986)
T ss_dssp --TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHH-----HHHHHHHHHHHH
T ss_pred --HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHH-----HHHHHHHHHhcc
Confidence 5788888888888888999888887777652 343321 256667666643
No 82
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=96.81 E-value=0.15 Score=55.69 Aligned_cols=71 Identities=20% Similarity=0.296 Sum_probs=54.7
Q ss_pred ccHHHHHHHhcc----------CCHHHHHHHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhccCCcchHHHHHHH
Q 006250 525 RIIGPLVNLLDE----------REPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTL 594 (654)
Q Consensus 525 ~~I~pLV~lL~~----------~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~ 594 (654)
.++..|+++|++ .++.+..=||.=|+.|+. ++|+..+.+-+.||=..+++|+.+.|+.++-+|+.+
T Consensus 395 ~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr----~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~a 470 (480)
T 1ho8_A 395 KIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVE----LLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKA 470 (480)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHH----HCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHH----HCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHH
Confidence 478999999973 356667779999999972 245555555667887788899999999899999998
Q ss_pred HHHHH
Q 006250 595 LCYIA 599 (654)
Q Consensus 595 L~~ia 599 (654)
+-.+.
T Consensus 471 vQklm 475 (480)
T 1ho8_A 471 TQAII 475 (480)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87663
No 83
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=96.69 E-value=0.0093 Score=59.97 Aligned_cols=134 Identities=10% Similarity=0.109 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHhhcCCh--HHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHH
Q 006250 410 QMKAMAARALWKLSKGNL--SICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAK 487 (654)
Q Consensus 410 ~lk~~Aa~AL~~La~gn~--~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~ 487 (654)
.+...|+.||+.|++|-. .-.+... .-.+|.++..+++....|+..+..|+..|....+ +. +.+. --.
T Consensus 76 ~v~~~A~~al~~la~~l~~~~f~~~y~-~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~--~~----~~~~---~l~ 145 (249)
T 2qk1_A 76 QAVALAAQSVELICDKLKTPGFSKDYV-SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYD--PL----ASSG---RNE 145 (249)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTSCHHHH-HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSC--TT----CTTC---TTH
T ss_pred HHHHHHHHHHHHHHHhcccccccHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcc--cc----ccCC---cHH
Confidence 356889999999996421 1110111 1368888889999999999999999888875332 10 0000 013
Q ss_pred HHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchh-------hh-hccHHHHHHHhccCCHHHHHHHHHHHHhcc
Q 006250 488 AVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRA-------TE-TRIIGPLVNLLDEREPEVIMEATVALNKFA 553 (654)
Q Consensus 488 ~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~-------~e-~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a 553 (654)
.+++.|...+++.++.++..++..|+.++..... .- ..+||.|.++|.+++.+|+..|..+|+.++
T Consensus 146 ~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~ 219 (249)
T 2qk1_A 146 DMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILI 219 (249)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 5778899999988999999999999999976552 11 468999999999999999999999998874
No 84
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=96.69 E-value=0.011 Score=61.86 Aligned_cols=133 Identities=14% Similarity=0.044 Sum_probs=108.8
Q ss_pred HHHHcccccCCCHHHHHHHHHHHHH-hccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcchHHHHH
Q 006250 151 IWEQIAILHTGSMEEKCDAAASLVS-LARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIV 229 (654)
Q Consensus 151 v~~lV~lL~s~~~~~k~~Aa~aL~~-La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~~iv 229 (654)
+.+++..|++++.+.+..+...|.. +. .+.......++.||+..|++...+++...|..+.+||.+|-.+...-..++
T Consensus 120 a~~iiekL~~~~~~~lr~aLfsLk~~~q-~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvv 198 (339)
T 3dad_A 120 VNAILEKLYSSSGPELRRSLFSLKQIFQ-EDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVV 198 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHH-TCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhh-cchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchh
Confidence 5556888999999999999999998 55 447889999999999999999999999999999999999988766665666
Q ss_pred H-cCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCC----------cHHHHHHhhc
Q 006250 230 N-AGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNN----------IVRFLVSHLA 284 (654)
Q Consensus 230 ~-~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g----------~I~~LV~LL~ 284 (654)
. ...|.-+..++.+.+..|...|...|..++..++.+...+.++= -...|+.+|.
T Consensus 199 s~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~ 264 (339)
T 3dad_A 199 AHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILE 264 (339)
T ss_dssp HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHT
T ss_pred CCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHh
Confidence 4 45677888888888888999999999999886665555554321 2679999997
No 85
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=95.01 E-value=0.23 Score=51.82 Aligned_cols=147 Identities=14% Similarity=0.118 Sum_probs=84.2
Q ss_pred HHHHHHHHH-hhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHH
Q 006250 413 AMAARALWK-LSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLE 491 (654)
Q Consensus 413 ~~Aa~AL~~-La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~ 491 (654)
..+..-|-. +. ....-...++..+++.||++..+.++++.+.++-.|+.+|- ++..- ..+++
T Consensus 136 r~aLfsLk~~~q-~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM---~~v~G------------m~gvv- 198 (339)
T 3dad_A 136 RRSLFSLKQIFQ-EDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLM---LFVDG------------MLGVV- 198 (339)
T ss_dssp HHHHHHHHHHHH-TCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHT---TSHHH------------HHHHH-
T ss_pred HHHHHHHHHHhh-cchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHH---hcccc------------ccchh-
Confidence 344444444 32 45667788999999999999999999999999999998874 21100 00111
Q ss_pred HHHHHhhhcCcchhhHHHHHHHHhhhcchhhhhccHHHHHHHhccCCHHHHHHHHHHHHhcccc--CCCCCH-HHHHHHH
Q 006250 492 QLLHIVEKADSDLLIPSIRAIGNLARTFRATETRIIGPLVNLLDEREPEVIMEATVALNKFATT--ENYLSE-THSKAII 568 (654)
Q Consensus 492 ~L~~ll~~~~~~l~~~~~~alg~la~~~~~~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a~~--~n~~~~-~~~~~Iv 568 (654)
++ ...|.-|+.++.+.+..|.+.|..-|-.|... +|+... +.++...
T Consensus 199 ------s~------------------------~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~ 248 (339)
T 3dad_A 199 ------AH------------------------SDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVA 248 (339)
T ss_dssp ------HC------------------------HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred ------CC------------------------HHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhh
Confidence 10 12344444444444444544444444444311 111000 0111111
Q ss_pred HCCC---HHHHHHhhc---cCCcchHHHHHHHHHHHHhCCCchH
Q 006250 569 NAGG---VKHLIQLVY---FGEQMIQIPALTLLCYIAIKQPESK 606 (654)
Q Consensus 569 ~~gg---i~~Lv~LL~---~~~~~~q~~Al~~L~~ia~~~~~~~ 606 (654)
...| ...|+.+|. ++|..+|++|+.++-.+-.+.++.+
T Consensus 249 ~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~apd~d 292 (339)
T 3dad_A 249 STTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAALPDQD 292 (339)
T ss_dssp HHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCSSHH
T ss_pred hccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCCChh
Confidence 1223 568888887 6677789998887776656777655
No 86
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=94.40 E-value=0.022 Score=57.18 Aligned_cols=66 Identities=17% Similarity=0.069 Sum_probs=50.0
Q ss_pred cccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcchHHHHHHcCch
Q 006250 155 IAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIVNAGVC 234 (654)
Q Consensus 155 V~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~~iv~~GaI 234 (654)
-.+++++++++|..|+..| . ...|..+++++++.++..++..| . .
T Consensus 56 ~~ll~d~~~~VR~~AA~~l---~---------------~~~l~~L~~D~~~~VR~~aA~~L---~--------------~ 100 (244)
T 1lrv_A 56 VQYLADPFWERRAIAVRYS---P---------------VEALTPLIRDSDEVVRRAVAYRL---P--------------R 100 (244)
T ss_dssp GGGTTCSSHHHHHHHHTTS---C---------------GGGGGGGTTCSSHHHHHHHHTTS---C--------------S
T ss_pred HHHhcCCCHHHHHHHHHhC---C---------------HHHHHHHccCcCHHHHHHHHHHC---C--------------H
Confidence 3566888999999888853 1 23467788898999999888653 1 2
Q ss_pred HHHHHhhcCCChhHHHHHHHH
Q 006250 235 STFAKNLKDGHMKVQSVVAWA 255 (654)
Q Consensus 235 p~Lv~LL~s~~~~vq~~Aa~a 255 (654)
+.|..++++++..|+..++..
T Consensus 101 ~~L~~ll~D~d~~VR~~aA~~ 121 (244)
T 1lrv_A 101 EQLSALMFDEDREVRITVADR 121 (244)
T ss_dssp GGGGGTTTCSCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHh
Confidence 467888999999999988774
No 87
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=93.28 E-value=2 Score=50.97 Aligned_cols=95 Identities=11% Similarity=0.057 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhc------cCCHHHHHHHHHHHHHhcCCcchHHHHHHc-----C
Q 006250 164 EEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAY------EGELEGQENAARAIGLLGRDAESVEQIVNA-----G 232 (654)
Q Consensus 164 ~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~------s~~~~~q~~Aa~AL~nLa~~~e~~~~iv~~-----G 232 (654)
..|..|...|..++.. ..+.+.. -.++.+-..|. +.+-..++.|..+++.++.+-.....-... .
T Consensus 376 s~R~aa~~~L~~l~~~---~~~~v~~-~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~ 451 (960)
T 1wa5_C 376 TRRRACTDFLKELKEK---NEVLVTN-IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN 451 (960)
T ss_dssp CHHHHHHHHHHHHHHH---CHHHHHH-HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred CcHHHHHHHHHHHHHH---cchhHHH-HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence 3566777888888754 2233321 12233333344 345578889999999997531100000000 1
Q ss_pred chHHH----HHhhcCC---ChhHHHHHHHHHHHHhcC
Q 006250 233 VCSTF----AKNLKDG---HMKVQSVVAWAVSELASN 262 (654)
Q Consensus 233 aIp~L----v~LL~s~---~~~vq~~Aa~aL~nLa~~ 262 (654)
..+.| +..|.++ .+.+|..++|+|+.++..
T Consensus 452 l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~ 488 (960)
T 1wa5_C 452 VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQ 488 (960)
T ss_dssp HHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhh
Confidence 12222 2234555 789999999999999874
No 88
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=92.54 E-value=8.8 Score=45.32 Aligned_cols=92 Identities=13% Similarity=0.112 Sum_probs=59.2
Q ss_pred CCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhh---c--cCCHHHHHHHHHHHHHhcCC-cchHHHHHHcCch
Q 006250 161 GSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLA---Y--EGELEGQENAARAIGLLGRD-AESVEQIVNAGVC 234 (654)
Q Consensus 161 ~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL---~--s~~~~~q~~Aa~AL~nLa~~-~e~~~~iv~~GaI 234 (654)
.+...++.|..+|+.++..-.... ...++.++.++ . ..++.++..++|+|+.++.. .++.+.+ ...+
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl 548 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAI 548 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHH
Confidence 466788889999999985422211 13445555443 3 23688999999999998853 2221111 2356
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHhcC
Q 006250 235 STFAKNLKDGHMKVQSVVAWAVSELASN 262 (654)
Q Consensus 235 p~Lv~LL~s~~~~vq~~Aa~aL~nLa~~ 262 (654)
|.|+..|. +.++..|++++.+++..
T Consensus 549 ~~l~~~l~---~~v~~~A~~al~~l~~~ 573 (971)
T 2x1g_F 549 NLLVRGLN---SSMSAQATLGLKELCRD 573 (971)
T ss_dssp HHHHHHHH---SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhC---hHHHHHHHHHHHHHHHH
Confidence 77777773 68999999999999963
No 89
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=92.27 E-value=13 Score=43.62 Aligned_cols=94 Identities=15% Similarity=0.083 Sum_probs=63.9
Q ss_pred cCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhh---ccCCHHHHHHHHHHHHHhcCC-cchHHHHHHcCch
Q 006250 159 HTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLA---YEGELEGQENAARAIGLLGRD-AESVEQIVNAGVC 234 (654)
Q Consensus 159 ~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL---~s~~~~~q~~Aa~AL~nLa~~-~e~~~~iv~~GaI 234 (654)
.+.+...++.|..+++.++..-.... ...++.++..| .++++.++..++|+|+.++.. .++.. . -...+
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~-~-l~~vl 531 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPV-M-INSVL 531 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH-H-HTTTH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH-H-HHHHH
Confidence 34567788888999999985422111 12334444433 334678999999999988854 22222 2 24678
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHhc
Q 006250 235 STFAKNLKDGHMKVQSVVAWAVSELAS 261 (654)
Q Consensus 235 p~Lv~LL~s~~~~vq~~Aa~aL~nLa~ 261 (654)
+.|+..|.+ +.++..|++++.+++.
T Consensus 532 ~~l~~~l~~--~~V~~~A~~al~~l~~ 556 (963)
T 2x19_B 532 PLVLHALGN--PELSVSSVSTLKKICR 556 (963)
T ss_dssp HHHHHHTTC--GGGHHHHHHHHHHHHH
T ss_pred HHHHHHhCC--chHHHHHHHHHHHHHH
Confidence 888888855 7899999999999996
No 90
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=91.67 E-value=7.1 Score=46.13 Aligned_cols=55 Identities=7% Similarity=0.009 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHHHHHhcCCcchHHHHHHcCchHHHHHhh---c--CCChhHHHHHHHHHHHHhc
Q 006250 203 GELEGQENAARAIGLLGRDAESVEQIVNAGVCSTFAKNL---K--DGHMKVQSVVAWAVSELAS 261 (654)
Q Consensus 203 ~~~~~q~~Aa~AL~nLa~~~e~~~~iv~~GaIp~Lv~LL---~--s~~~~vq~~Aa~aL~nLa~ 261 (654)
.+-..++.|..+++.++.+..... ...+|.++.++ . ++++.++..++|+|+.++.
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~ 535 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCN 535 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHH
Confidence 345678899999999987632111 13344444433 2 2478899999999999886
No 91
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=91.14 E-value=2.3 Score=50.64 Aligned_cols=126 Identities=13% Similarity=0.109 Sum_probs=87.9
Q ss_pred HcccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccC-CHHHHHHHHHHHHHhcCCcchHHHHHHcC
Q 006250 154 QIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEG-ELEGQENAARAIGLLGRDAESVEQIVNAG 232 (654)
Q Consensus 154 lV~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~-~~~~q~~Aa~AL~nLa~~~e~~~~iv~~G 232 (654)
+...+......+|..|..++..+...-+.+.. ...+|.|+..|+++ .-..+..|...|..|+......-...-..
T Consensus 100 ~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~ 175 (986)
T 2iw3_A 100 ICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPE 175 (986)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred HHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccc
Confidence 35555566678888777666666432222222 34689999999876 47889999999999996432222222345
Q ss_pred chHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCc
Q 006250 233 VCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFET 287 (654)
Q Consensus 233 aIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~ 287 (654)
.||.+-+.+.+-.++|+..|..++-.++.. -.+++. +..||.||..+..++
T Consensus 176 ~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~-~~n~d~---~~~~~~~~~~~~~p~ 226 (986)
T 2iw3_A 176 LIPVLSETMWDTKKEVKAAATAAMTKATET-VDNKDI---ERFIPSLIQCIADPT 226 (986)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHGGG-CCCTTT---GGGHHHHHHHHHCTT
T ss_pred hhcchHhhcccCcHHHHHHHHHHHHHHHhc-CCCcch---hhhHHHHHHHhcChh
Confidence 789999999888899999999999999872 233332 257899999998763
No 92
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=90.90 E-value=1.6 Score=43.79 Aligned_cols=128 Identities=15% Similarity=0.108 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHhhcCChHH----HHH-HHhhCcHHHHH-HhhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCc
Q 006250 410 QMKAMAARALWKLSKGNLSI----CRN-LTESRALLCFA-VLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTS 483 (654)
Q Consensus 410 ~lk~~Aa~AL~~La~gn~~~----~~~-i~e~gaL~~L~-~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s 483 (654)
.++..++.+|..++.+-... ... ..-...++.|+ +.|.+++..++..+..++..+.......
T Consensus 70 ~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~------------ 137 (278)
T 4ffb_C 70 VAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI------------ 137 (278)
T ss_dssp HHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS------------
T ss_pred HHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH------------
Confidence 46677888888887632111 111 11123455554 3566778888888888877665322111
Q ss_pred hHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhhh-------hccHHHHHHHhccCCHHHHHHHHHHHHhc
Q 006250 484 TAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRATE-------TRIIGPLVNLLDEREPEVIMEATVALNKF 552 (654)
Q Consensus 484 ~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~e-------~~~I~pLV~lL~~~~~~v~~eAa~AL~~~ 552 (654)
..+++.+...+++.++.++..++..|..+-..|.... ..+++.+..+|.+++..||.+|...+..+
T Consensus 138 ---~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~l 210 (278)
T 4ffb_C 138 ---TQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEI 210 (278)
T ss_dssp ---HHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 2355677777888889999999988888877664321 12455778889999999999998887765
No 93
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=88.95 E-value=6.9 Score=46.38 Aligned_cols=179 Identities=9% Similarity=0.134 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhhcc----cChHhhhhccCCCchH
Q 006250 410 QMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAE----KNSDLRRSAFKPTSTA 485 (654)
Q Consensus 410 ~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae----~~~~lrr~a~~~~s~~ 485 (654)
.++..|+++|+.++..- .+.. -...++.++..|.+.+..|+..||+||.+++...+ ..+++.+..+ .|-
T Consensus 473 ~vr~~a~~~lg~~~~~~---~~~~-l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l---~p~ 545 (960)
T 1wa5_C 473 ILRVDAIKYIYTFRNQL---TKAQ-LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDI---SNS 545 (960)
T ss_dssp HHHHHHHHHHHHTGGGS---CHHH-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGT---TTT
T ss_pred eehHHHHHHHHHHHhhC---CHHH-HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHh---hhh
Confidence 47789999999998742 1111 23567788888888888999999999999875321 0112222222 244
Q ss_pred HHHHHHHHHHHhhhcC-----cchhhHHHHHHHHhhhcchhh----hhccHHHHHHHhc-----cCCHHHHHHHHHHHHh
Q 006250 486 AKAVLEQLLHIVEKAD-----SDLLIPSIRAIGNLARTFRAT----ETRIIGPLVNLLD-----EREPEVIMEATVALNK 551 (654)
Q Consensus 486 ~~~vv~~L~~ll~~~~-----~~l~~~~~~alg~la~~~~~~----e~~~I~pLV~lL~-----~~~~~v~~eAa~AL~~ 551 (654)
...+++.|..+++... ......+..+|+.++..+... -..++++|+..+. ..+.........+|+.
T Consensus 546 l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~ 625 (960)
T 1wa5_C 546 TEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGA 625 (960)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 5678888999988751 123457778888777654321 1124555665552 2345555556666666
Q ss_pred ccccCCCCCHHHHHHHHHCCCHHHHHHhhccCCcchHHHHHHHHHHHH
Q 006250 552 FATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIA 599 (654)
Q Consensus 552 ~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~ia 599 (654)
++... .++....+ +.-.++++..+|.........+++..++.+.
T Consensus 626 l~~~~---~~~~~~~~-~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 626 ILNYT---QRQNLPLL-VDSMMPTFLTVFSEDIQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HHHTS---CGGGHHHH-HHHHHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred HHhcC---CcchHHHH-HHHHHHHHHHHHHhhhHhhHHHHHHHHHHHH
Confidence 65331 12333333 2335567777776543334444666555553
No 94
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=88.08 E-value=3.4 Score=40.89 Aligned_cols=130 Identities=13% Similarity=0.089 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHH-hhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHH
Q 006250 410 QMKAMAARALWKLSKGNLSICRNLTESRALLCFAV-LLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKA 488 (654)
Q Consensus 410 ~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~-LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~ 488 (654)
+.+--|+..|+.+ . .....|+.+-. +-.+..=.|++-+++++.+++.... ++ .
T Consensus 86 eVR~~Av~lLg~~-~---------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~--pe--------------~ 139 (240)
T 3l9t_A 86 QVRMYAVFLFGYL-S---------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIE--YK--------------K 139 (240)
T ss_dssp HHHHHHHHHHHHT-T---------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHC--TT--------------T
T ss_pred HHHHHHHHHHHhc-c---------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcC--HH--------------H
Confidence 4566777788876 2 11234444444 4444455899999999999874221 11 1
Q ss_pred HHHHHHHHhhhcCcchhhHHHHHHH--HhhhcchhhhhccHHHHHHHhccCCHHHHHHHHHHHHhccccCCCCCHHHHHH
Q 006250 489 VLEQLLHIVEKADSDLLIPSIRAIG--NLARTFRATETRIIGPLVNLLDEREPEVIMEATVALNKFATTENYLSETHSKA 566 (654)
Q Consensus 489 vv~~L~~ll~~~~~~l~~~~~~alg--~la~~~~~~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~ 566 (654)
.++.+....++++..++..++..+- +.-..|...-..++|-|-.+..+++++|++..+|+|..++.. +|+-...
T Consensus 140 ~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~----~Pd~V~~ 215 (240)
T 3l9t_A 140 ALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK----FPDLVKI 215 (240)
T ss_dssp THHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT----CHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh----CHHHHHH
Confidence 3456777888888889988877651 111122222224566666677999999999999999999743 4666666
Q ss_pred HHH
Q 006250 567 IIN 569 (654)
Q Consensus 567 Iv~ 569 (654)
+++
T Consensus 216 ~~~ 218 (240)
T 3l9t_A 216 ELK 218 (240)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 95
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=85.84 E-value=1.5 Score=52.66 Aligned_cols=120 Identities=13% Similarity=0.104 Sum_probs=73.1
Q ss_pred CCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccC-----CHHHHHHHHHHHHHhcCCcchHHHHHHcCchH
Q 006250 161 GSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEG-----ELEGQENAARAIGLLGRDAESVEQIVNAGVCS 235 (654)
Q Consensus 161 ~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~-----~~~~q~~Aa~AL~nLa~~~e~~~~iv~~GaIp 235 (654)
.+-..++.++++++.++..-......-.=..++|.|+.++... ...++..++|+|+..+.--...... =...+.
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~-L~~vl~ 543 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNF-LRTVIL 543 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHH-HHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHH-HHHHHH
Confidence 4677888899999999854332212111234788999988641 1334456778888766431111111 112344
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHh------CCcHHHHHHhhc
Q 006250 236 TFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQ------NNIVRFLVSHLA 284 (654)
Q Consensus 236 ~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~------~g~I~~LV~LL~ 284 (654)
.|++.|..+.+.++..|++++.+|+. +++..+.. ..-++.++..+.
T Consensus 544 ~L~~~l~~~~~~v~~~A~~al~~l~~---~c~~~l~~~~~~e~~p~~~~il~~l~ 595 (1023)
T 4hat_C 544 KLFEFMHETHEGVQDMACDTFIKIVQ---KCKYHFVIQQPRESEPFIQTIIRDIQ 595 (1023)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHH---HHTHHHHSCCTTCSSCHHHHHHHTHH
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHH---HHHHHhhccCCCCCchhHHHHHHHHH
Confidence 45555555668899999999999997 56666643 224566655443
No 96
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=84.44 E-value=4.4 Score=40.85 Aligned_cols=99 Identities=7% Similarity=0.058 Sum_probs=76.5
Q ss_pred cHHHHHHhhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhh
Q 006250 438 ALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLAR 517 (654)
Q Consensus 438 aL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~ 517 (654)
.+|+|+.=+-+.++.||..+-..+..+.... | ...+.+.+..-+++.+...+..|+..++++-.
T Consensus 133 ~lP~LveKlGd~k~~vR~~~r~il~~l~~v~---------------~-~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~ 196 (266)
T 2of3_A 133 FVPYLLLKTGEAKDNMRTSVRDIVNVLSDVV---------------G-PLKMTPMLLDALKSKNARQRSECLLVIEYYIT 196 (266)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH---------------C-HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHHC---------------C-HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 5777776666667788887777666554221 1 13477888888888889999999999999887
Q ss_pred cchhhhhccH---HHHHHHhccCCHHHHHHHHHHHHhc
Q 006250 518 TFRATETRII---GPLVNLLDEREPEVIMEATVALNKF 552 (654)
Q Consensus 518 ~~~~~e~~~I---~pLV~lL~~~~~~v~~eAa~AL~~~ 552 (654)
.+.......+ |.+..+|.+++..|+..|.-++..+
T Consensus 197 ~~G~~~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~ 234 (266)
T 2of3_A 197 NAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVAC 234 (266)
T ss_dssp HHCSGGGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHH
T ss_pred hcCCCccccccchHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 7665555678 9999999999999999998888654
No 97
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=83.88 E-value=3.1 Score=50.08 Aligned_cols=133 Identities=8% Similarity=-0.001 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccC-----ChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchH
Q 006250 411 MKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKG-----PEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTA 485 (654)
Q Consensus 411 lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~-----~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~ 485 (654)
-.+.+.+|+|.++.|-.+....-.-...++.|+.|++.. +.-|+..+||+|+.++.--..+++.
T Consensus 469 ~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~----------- 537 (1023)
T 4hat_C 469 NINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNF----------- 537 (1023)
T ss_dssp HHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHH-----------
T ss_pred HHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHH-----------
Confidence 568899999999987554433333345777888888742 2345667889998776544333332
Q ss_pred HHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhhh--------hccHHHHHHHh----ccCCHHHHHHHHHHHHhcc
Q 006250 486 AKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRATE--------TRIIGPLVNLL----DEREPEVIMEATVALNKFA 553 (654)
Q Consensus 486 ~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~e--------~~~I~pLV~lL----~~~~~~v~~eAa~AL~~~a 553 (654)
-+.++..|...+....+.++..||+|+.+++...+..- .-.++++++.+ +.-+..-...+..|++.+.
T Consensus 538 L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi 617 (1023)
T 4hat_C 538 LRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIII 617 (1023)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 24567777777766668899999999999998544321 11355555544 3345556666777777775
Q ss_pred c
Q 006250 554 T 554 (654)
Q Consensus 554 ~ 554 (654)
.
T Consensus 618 ~ 618 (1023)
T 4hat_C 618 S 618 (1023)
T ss_dssp T
T ss_pred H
Confidence 3
No 98
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=81.56 E-value=7.4 Score=42.43 Aligned_cols=95 Identities=14% Similarity=0.164 Sum_probs=76.4
Q ss_pred CCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcchHHHHHHcCchHHHHH
Q 006250 160 TGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIVNAGVCSTFAK 239 (654)
Q Consensus 160 s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~~iv~~GaIp~Lv~ 239 (654)
.|+...|.-|+.-|....++-|+.... +|..++.|.++.+..++..|...|..+|.+ ++...|+ ..|++
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~kia-----DvL~Q 107 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPRVA-----DILTQ 107 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHHHH-----HHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhhHH-----HHHHH
Confidence 578999999999999998776776554 577899999999999999999999999998 6666554 57999
Q ss_pred hhcCCChhHHHHHHHHHHHHhcCChh
Q 006250 240 NLKDGHMKVQSVVAWAVSELASNHPK 265 (654)
Q Consensus 240 LL~s~~~~vq~~Aa~aL~nLa~~~~~ 265 (654)
||.+.+..-...+-++|..|-..++.
T Consensus 108 lLqtdd~~E~~~V~~sL~sllk~Dpk 133 (507)
T 3u0r_A 108 LLQTDDSAEFNLVNNALLSIFKMDAK 133 (507)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHCHH
T ss_pred HHhccchHHHHHHHHHHHHHHhcChH
Confidence 99988866556666777766654543
No 99
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=81.03 E-value=17 Score=42.61 Aligned_cols=136 Identities=14% Similarity=0.124 Sum_probs=82.9
Q ss_pred ccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhh---hcCcchhhHHHHHHHHhhhcchhh-
Q 006250 447 EKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVE---KADSDLLIPSIRAIGNLARTFRAT- 522 (654)
Q Consensus 447 ~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~---~~~~~l~~~~~~alg~la~~~~~~- 522 (654)
.+.+-..+.-+++++..|+.+.... ..+ .+++++.++. .+++.++..+++++|..+..+...
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~----------~~~----~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~ 524 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVN----------YSD----VVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP 524 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSS----------CCS----HHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCch----------hhH----HHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH
Confidence 3344466777888888887554321 011 2334444442 234668889999999998765432
Q ss_pred --hhccHHHHHHHhccCCHHHHHHHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhccCC--cchHHHHHHHHHHH
Q 006250 523 --ETRIIGPLVNLLDEREPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGE--QMIQIPALTLLCYI 598 (654)
Q Consensus 523 --e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~--~~~q~~Al~~L~~i 598 (654)
-..+++.|++.|++ +.|+..|++||.+++......-..+...| +..|.+++..++ ...+...+.++..+
T Consensus 525 ~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~i-----l~~l~~~l~~~~~~~~~~~~~~eai~~i 597 (963)
T 2x19_B 525 VMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANI-----VAVSQDVLMKQIHKTSQCMWLMQALGFL 597 (963)
T ss_dssp HHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHH-----HHHHHHHhccCCCChHHHHHHHHHHHHH
Confidence 12467888888865 78999999999999732111011222222 234555666433 33566688899998
Q ss_pred HhCCC
Q 006250 599 AIKQP 603 (654)
Q Consensus 599 a~~~~ 603 (654)
+...+
T Consensus 598 ~~~~~ 602 (963)
T 2x19_B 598 LSALQ 602 (963)
T ss_dssp HTTSC
T ss_pred HhcCC
Confidence 76665
No 100
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=76.23 E-value=16 Score=36.15 Aligned_cols=158 Identities=13% Similarity=0.125 Sum_probs=88.7
Q ss_pred cHHHHHHhhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHH-HHhhhcCcchhhHHHHHHHHhh
Q 006250 438 ALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLL-HIVEKADSDLLIPSIRAIGNLA 516 (654)
Q Consensus 438 aL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~-~ll~~~~~~l~~~~~~alg~la 516 (654)
..+.|.+.+.+.+..|+..++.+|..+..........+.- + ...+..+++.|+ +.+.+....++..+..++-.++
T Consensus 56 ~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~-~---~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~ 131 (278)
T 4ffb_C 56 DPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAH-N---ITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLC 131 (278)
T ss_dssp CTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHH-H---HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccch-h---HHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 3455667888888999999999998886543221111110 0 011222334333 2344444556666666665554
Q ss_pred hcchhhhhccHHHHHHHhccCCHHHHHHHHHHHHhcccc--CCCCCHHHHHHHHHCCCHHHHHHhhccCCcchHHHHHHH
Q 006250 517 RTFRATETRIIGPLVNLLDEREPEVIMEATVALNKFATT--ENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTL 594 (654)
Q Consensus 517 ~~~~~~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a~~--~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~ 594 (654)
...... ..++..++..|++.++.++.++...|.++... ..... .+..+. ..++.+..++...++.+...|..+
T Consensus 132 ~~~~~~-~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~---~k~~l~-~i~~~l~k~l~d~~~~VR~aA~~l 206 (278)
T 4ffb_C 132 GLDTSI-TQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVN---VQTFLP-ELLKHVPQLAGHGDRNVRSQTMNL 206 (278)
T ss_dssp HTSSSS-HHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCC---HHHHHH-HHGGGHHHHHTCSSHHHHHHHHHH
T ss_pred HhcCcH-HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCC---chhHHH-HHHHHHHHHHhCCcHHHHHHHHHH
Confidence 322111 13567777888999999999988777665311 11111 111111 134567778888888787778888
Q ss_pred HHHHHhCCCc
Q 006250 595 LCYIAIKQPE 604 (654)
Q Consensus 595 L~~ia~~~~~ 604 (654)
+..+-...|.
T Consensus 207 ~~~ly~~~G~ 216 (278)
T 4ffb_C 207 IVEIYKVTGN 216 (278)
T ss_dssp HHHHHTC---
T ss_pred HHHHHHHhCc
Confidence 8777656664
No 101
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=74.70 E-value=65 Score=38.69 Aligned_cols=122 Identities=12% Similarity=0.177 Sum_probs=76.8
Q ss_pred ChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhhhhccHHH
Q 006250 450 PEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRATETRIIGP 529 (654)
Q Consensus 450 ~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~e~~~I~p 529 (654)
++.++..+..+++.+....-.+. -.+.....+.+.+.|.+.++..+.+-+.-.++||||++. ...|++
T Consensus 408 ~~~l~~ta~La~gslV~k~c~~~------~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~------p~~l~~ 475 (1056)
T 1lsh_A 408 RPILRKTAVLGYGSLVFRYCANT------VSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ------PNSIKK 475 (1056)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTC------SSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC------GGGHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhccC------CCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC------hhHHHH
Confidence 45677777777766643211110 011223345667778888888887788899999999984 247888
Q ss_pred HHHHhcc-------CCHHHHHHHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhccCCc--chHHHHHHHH
Q 006250 530 LVNLLDE-------REPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQ--MIQIPALTLL 595 (654)
Q Consensus 530 LV~lL~~-------~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~--~~q~~Al~~L 595 (654)
|..+|.. ....|+..|.|||.++++.. ++... +.|+++...... .+.+.|+..|
T Consensus 476 l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~----p~~v~--------~il~~i~~n~~e~~EvRiaA~~~L 538 (1056)
T 1lsh_A 476 IQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD----PRKVQ--------EIVLPIFLNVAIKSELRIRSCIVF 538 (1056)
T ss_dssp HHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC----HHHHH--------HHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred HHHhhcCccccccccchHHHHHHHHHHHHhhhhc----hHHHH--------HHHHHHhcCCCCChHHHHHHHHHH
Confidence 9888842 24578899999999998532 22222 457777654433 2444455544
No 102
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=72.87 E-value=18 Score=35.75 Aligned_cols=100 Identities=11% Similarity=0.100 Sum_probs=73.6
Q ss_pred CCCHHHHHHHHHHHHHhcc-CCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCC---cchHHHHHHcCchH
Q 006250 160 TGSMEEKCDAAASLVSLAR-DNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRD---AESVEQIVNAGVCS 235 (654)
Q Consensus 160 s~~~~~k~~Aa~aL~~La~-~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~---~e~~~~iv~~GaIp 235 (654)
..+-.+++.++.++..++. .+++ -.++.+...+++++..+++.|+..+.--+.. ..+... .+|
T Consensus 115 D~~WrVre~lA~a~~~~~~~~~pe--------~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~-----ll~ 181 (240)
T 3l9t_A 115 DNNWRVQEVLAKAFDEFCKKIEYK--------KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNE-----AIR 181 (240)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHCTT--------TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHH-----HHH
T ss_pred CCCccHHHHHHHHHHHHHHhcCHH--------HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHH-----HHH
Confidence 5677889999999998874 3232 2678888999999999999888776432322 122222 467
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHh
Q 006250 236 TFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQ 272 (654)
Q Consensus 236 ~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~ 272 (654)
.|-.+..+++.-||...+|+|..++..+|+--..+++
T Consensus 182 iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~~ 218 (240)
T 3l9t_A 182 RIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIELK 218 (240)
T ss_dssp HHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHHHH
Confidence 7777777888899999999999999999875555444
No 103
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=72.30 E-value=16 Score=36.60 Aligned_cols=126 Identities=11% Similarity=0.081 Sum_probs=89.9
Q ss_pred CHHHHHHHHHHHHHhccCCchhHHHHHhc-CCHHHHHHh-------hccCC-----HHHHHHHHHHHHHhcCCcchHHHH
Q 006250 162 SMEEKCDAAASLVSLARDNDRYGKLIIEE-GGVPPLLKL-------AYEGE-----LEGQENAARAIGLLGRDAESVEQI 228 (654)
Q Consensus 162 ~~~~k~~Aa~aL~~La~~~~~~~~~I~e~-G~Ip~LV~L-------L~s~~-----~~~q~~Aa~AL~nLa~~~e~~~~i 228 (654)
+++.|++|...|..--..-++..-.+... |.|..|++= |..++ ..-..+|..-|..++++++.|..+
T Consensus 14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAshpetr~~F 93 (268)
T 2fv2_A 14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAF 93 (268)
T ss_dssp STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHCTTTHHHH
T ss_pred CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcCcchhhHH
Confidence 34568887777766443334555666666 666666542 22222 112256777778899999999999
Q ss_pred HHcCchHHHHHhhcCCC-----hhHHHHHHHHHHHHhc-CChhhHHHHHhCCcHHHHHHhhccCc
Q 006250 229 VNAGVCSTFAKNLKDGH-----MKVQSVVAWAVSELAS-NHPKCQDHFAQNNIVRFLVSHLAFET 287 (654)
Q Consensus 229 v~~GaIp~Lv~LL~s~~-----~~vq~~Aa~aL~nLa~-~~~~~r~~i~~~g~I~~LV~LL~~~~ 287 (654)
+++...-.|--+|+..+ +-+|-.+.+.++.|.. ++++....+.+.++||..+..+..|+
T Consensus 94 l~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~Gs 158 (268)
T 2fv2_A 94 LAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGS 158 (268)
T ss_dssp HHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSC
T ss_pred HHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhcc
Confidence 99988766777776433 4688889999999886 56777788888999999999999886
No 104
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=72.15 E-value=12 Score=40.85 Aligned_cols=89 Identities=18% Similarity=0.225 Sum_probs=63.4
Q ss_pred ccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhhhhcc
Q 006250 447 EKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRATETRI 526 (654)
Q Consensus 447 ~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~e~~~ 526 (654)
-+|+...|.-||.-|... -.+=|+++. ..++.+++|.+++|..++..+++.|..+++. .. -.++
T Consensus 38 ~kg~~k~K~LaaQ~I~kf---fk~FP~l~~-----------~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~-i~ki 101 (507)
T 3u0r_A 38 VKGGTKEKRLAAQFIPKF---FKHFPELAD-----------SAINAQLDLCEDEDVSIRRQAIKELPQFATG-EN-LPRV 101 (507)
T ss_dssp GGSCHHHHHHHHHHHHHH---GGGCGGGHH-----------HHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TC-HHHH
T ss_pred cCCCHHHHHHHHHHHHHH---HhhChhhHH-----------HHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hh-hhhH
Confidence 456677888877775443 344555554 4678899999999999999999999999987 22 2468
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHh
Q 006250 527 IGPLVNLLDEREPEVIMEATVALNK 551 (654)
Q Consensus 527 I~pLV~lL~~~~~~v~~eAa~AL~~ 551 (654)
+..|++||.+.++.-....-++|..
T Consensus 102 aDvL~QlLqtdd~~E~~~V~~sL~s 126 (507)
T 3u0r_A 102 ADILTQLLQTDDSAEFNLVNNALLS 126 (507)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccchHHHHHHHHHHHH
Confidence 8899999987776544444444433
No 105
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=71.96 E-value=37 Score=40.49 Aligned_cols=96 Identities=17% Similarity=0.156 Sum_probs=58.2
Q ss_pred ChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhh-----cCcchhhHHHHHHHHhhhcchhhh-
Q 006250 450 PEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEK-----ADSDLLIPSIRAIGNLARTFRATE- 523 (654)
Q Consensus 450 ~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~-----~~~~l~~~~~~alg~la~~~~~~e- 523 (654)
+-..+.-++|+++.|+..... ... .+....+++.|+.+... ..+.++..+++.+|..++.|....
T Consensus 466 ~W~~~eaal~algsia~~~~~--~~e-------~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~ 536 (1049)
T 3m1i_C 466 SWHNINTLSWAIGSISGTMSE--DTE-------KRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWN 536 (1049)
T ss_dssp CHHHHHHHHHHHHHTTTSSCH--HHH-------HHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHH
T ss_pred CHHHHHHHHHHHHHHhcccCc--hhh-------HHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHH
Confidence 335677888888877532110 000 01112344555554332 123344457788888887665532
Q ss_pred --hccHHHHHHHhccCCHHHHHHHHHHHHhccc
Q 006250 524 --TRIIGPLVNLLDEREPEVIMEATVALNKFAT 554 (654)
Q Consensus 524 --~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a~ 554 (654)
..+++.|++.|.+.++.|+..|++||.+|+.
T Consensus 537 ~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~ 569 (1049)
T 3m1i_C 537 FLRTVILKLFEFMHETHEGVQDMACDTFIKIVQ 569 (1049)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 1356667777888899999999999999973
No 106
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=70.39 E-value=11 Score=37.04 Aligned_cols=80 Identities=10% Similarity=0.108 Sum_probs=62.9
Q ss_pred hhHHHHHhcCCHHHHHHhhcc----C-------CHHHHHHHHHHHHHhcCCcchHHHHHH-cCchHHHHHhhcCCChhHH
Q 006250 182 RYGKLIIEEGGVPPLLKLAYE----G-------ELEGQENAARAIGLLGRDAESVEQIVN-AGVCSTFAKNLKDGHMKVQ 249 (654)
Q Consensus 182 ~~~~~I~e~G~Ip~LV~LL~s----~-------~~~~q~~Aa~AL~nLa~~~e~~~~iv~-~GaIp~Lv~LL~s~~~~vq 249 (654)
...+.. ..||+..|+.+|.. + +...+.....+|..|.........+.. ..++..|+..|.++.+.++
T Consensus 35 ~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r 113 (233)
T 2f31_A 35 SWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMM 113 (233)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHH
T ss_pred HHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHH
Confidence 344444 57899999998853 1 246678899999999887766666654 5689999999999999999
Q ss_pred HHHHHHHHHHhcC
Q 006250 250 SVVAWAVSELASN 262 (654)
Q Consensus 250 ~~Aa~aL~nLa~~ 262 (654)
..+...|.-+|..
T Consensus 114 ~~~leLL~~lc~~ 126 (233)
T 2f31_A 114 IDAAKLLSALCIL 126 (233)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC
Confidence 9999999988874
No 107
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=67.38 E-value=46 Score=33.98 Aligned_cols=106 Identities=12% Similarity=0.017 Sum_probs=71.0
Q ss_pred CCHHHHHHHHHHHHHhccCCchhHHHHHhc--CCHHHHHHhhccCCHHHHHHHHHHHHHhcCCc---chHHHHHHcCchH
Q 006250 161 GSMEEKCDAAASLVSLARDNDRYGKLIIEE--GGVPPLLKLAYEGELEGQENAARAIGLLGRDA---ESVEQIVNAGVCS 235 (654)
Q Consensus 161 ~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~--G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~---e~~~~iv~~GaIp 235 (654)
+.+..+.-+++.+.|+-.. +..++.+... -.++.+..++.+.+..+|..++..+.|++..- ...+.. .-.+.
T Consensus 160 ~~p~n~ml~lR~l~NlF~~-~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~--~~ll~ 236 (304)
T 3ebb_A 160 GKPANQLLALRTFCNCFVG-QAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGK--AQCLS 236 (304)
T ss_dssp SCHHHHHHHHHHHHHGGGS-HHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHH--HHHHH
T ss_pred CChHHHHHHHHHHHHccCC-chhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHH--HHHHH
Confidence 4666788999999999865 6778777653 23444555555667899999999999999531 111111 11344
Q ss_pred HHHHhhcC-CChhHHHHHHHHHHHHhcCChhhHHH
Q 006250 236 TFAKNLKD-GHMKVQSVVAWAVSELASNHPKCQDH 269 (654)
Q Consensus 236 ~Lv~LL~s-~~~~vq~~Aa~aL~nLa~~~~~~r~~ 269 (654)
.+..++.. .+.+......-||++|...+++.++.
T Consensus 237 ~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~l 271 (304)
T 3ebb_A 237 LISTILEVVQDLEATFRLLVALGTLISDDSNAVQL 271 (304)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHH
Confidence 45555543 56788889999999999765544433
No 108
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=64.22 E-value=29 Score=36.67 Aligned_cols=108 Identities=12% Similarity=0.089 Sum_probs=73.5
Q ss_pred cccccCCCHHHH-HHHHHHHHHhccCCc-hhHHHHHhcCCHHHHHHhhcc-----------CCHHHHHHHHHHHHHhcCC
Q 006250 155 IAILHTGSMEEK-CDAAASLVSLARDND-RYGKLIIEEGGVPPLLKLAYE-----------GELEGQENAARAIGLLGRD 221 (654)
Q Consensus 155 V~lL~s~~~~~k-~~Aa~aL~~La~~~~-~~~~~I~e~G~Ip~LV~LL~s-----------~~~~~q~~Aa~AL~nLa~~ 221 (654)
|..|+++....+ ......|+.--+.++ ...+..+ .+|+..|+.+|.. .+...+.....+|..|..+
T Consensus 72 i~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~ 150 (383)
T 3eg5_B 72 IQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN 150 (383)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSS
T ss_pred HHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcc
Confidence 555665532222 223334433222223 3444555 7899999999852 1346788899999999887
Q ss_pred cchHHHHHH-cCchHHHHHhhcCCChhHHHHHHHHHHHHhcCC
Q 006250 222 AESVEQIVN-AGVCSTFAKNLKDGHMKVQSVVAWAVSELASNH 263 (654)
Q Consensus 222 ~e~~~~iv~-~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~ 263 (654)
......++. ...|..|+..|.+..+.++..+...|.-+|...
T Consensus 151 ~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~ 193 (383)
T 3eg5_B 151 KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILP 193 (383)
T ss_dssp HHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCC
T ss_pred hhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCc
Confidence 766665554 568999999999999999999999999998743
No 109
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=63.18 E-value=28 Score=34.83 Aligned_cols=95 Identities=13% Similarity=0.129 Sum_probs=76.7
Q ss_pred HHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCC-----HHHHHHHHHHHHHhcCC--cchHHHHHHcCchHHHHH
Q 006250 167 CDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGE-----LEGQENAARAIGLLGRD--AESVEQIVNAGVCSTFAK 239 (654)
Q Consensus 167 ~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~-----~~~q~~Aa~AL~nLa~~--~e~~~~iv~~GaIp~Lv~ 239 (654)
.+|...|-.+|.+ ++.|..++++...--|.-+|...+ +-++-.+.+.++.|... ++.-..+.+.+.||..++
T Consensus 74 cnaLaLlQcvAsh-petr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLr 152 (268)
T 2fv2_A 74 CNALALLQCVASH-PETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLR 152 (268)
T ss_dssp HHHHHHHHHHHHC-TTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHcC-cchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHH
Confidence 4566666777876 889999999987666666776554 45777889999999864 456677788999999999
Q ss_pred hhcCCChhHHHHHHHHHHHHhcC
Q 006250 240 NLKDGHMKVQSVVAWAVSELASN 262 (654)
Q Consensus 240 LL~s~~~~vq~~Aa~aL~nLa~~ 262 (654)
.+..|++-.|..|+..+..|-.+
T Consensus 153 ime~GselSKtvAtfIlqKIL~d 175 (268)
T 2fv2_A 153 IMESGSELSKTVATFILQKILLD 175 (268)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHS
T ss_pred HHhhccHHHHHHHHHHHHHHhcc
Confidence 99999999999999999998873
No 110
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=61.79 E-value=7.4 Score=38.63 Aligned_cols=62 Identities=13% Similarity=0.136 Sum_probs=36.0
Q ss_pred HHHHhhccCCHHHHHHHHHHHH-----HhcCCc--chHHHHHHcCchHHHHHhhcCCChhHHHHHHHHH
Q 006250 195 PLLKLAYEGELEGQENAARAIG-----LLGRDA--ESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAV 256 (654)
Q Consensus 195 ~LV~LL~s~~~~~q~~Aa~AL~-----nLa~~~--e~~~~iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL 256 (654)
.|..++++.++.++..++..+. .+..++ +-|..++..-..+.|+.++.+++..|+..++..+
T Consensus 150 ~l~~l~~D~d~~VR~~aa~~l~~~ll~~ll~D~d~~VR~aaa~~l~~~~L~~Ll~D~d~~VR~~aa~~l 218 (244)
T 1lrv_A 150 RLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVEHA 218 (244)
T ss_dssp GGGGTTTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHHCCGGGGGGGGGCSSHHHHHHHHHHS
T ss_pred HHHHHHcCCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHhCCHHHHHHHHcCCCHHHHHHHHHcC
Confidence 3444555556666666555422 122222 2344555555667788888888888888777654
No 111
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=60.76 E-value=1.4e+02 Score=29.80 Aligned_cols=141 Identities=11% Similarity=0.073 Sum_probs=91.0
Q ss_pred cCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhhhhccH
Q 006250 448 KGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRATETRII 527 (654)
Q Consensus 448 ~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~e~~~I 527 (654)
+.+..|...+.-.|..+... +++...+...-.+..+++.|+.=+.+..+.++..+-..+-.+...++ ...+.
T Consensus 98 d~N~~v~~~~L~~L~~l~~~------l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~--~~~v~ 169 (266)
T 2of3_A 98 ETNPAALIKVLELCKVIVEL------IRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG--PLKMT 169 (266)
T ss_dssp SCCHHHHHHHHHHHHHHHHH------HHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC--HHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH------HHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC--HHHHH
Confidence 56777887777777765311 11111222222234577777766766556677666555555543322 23578
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhccccCCCCCHHHHHHHHHCCCH---HHHHHhhccCCcchHHHHHHHHHHHHhCCCc
Q 006250 528 GPLVNLLDEREPEVIMEATVALNKFATTENYLSETHSKAIINAGGV---KHLIQLVYFGEQMIQIPALTLLCYIAIKQPE 604 (654)
Q Consensus 528 ~pLV~lL~~~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi---~~Lv~LL~~~~~~~q~~Al~~L~~ia~~~~~ 604 (654)
+.+++-+.+.+..++.|....+..+-..-. .. ...++ +++..++...|..+.-.|+.++..+=.++|+
T Consensus 170 ~~l~~g~ksKN~R~R~e~l~~l~~li~~~G--~~-------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd 240 (266)
T 2of3_A 170 PMLLDALKSKNARQRSECLLVIEYYITNAG--IS-------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGD 240 (266)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHHHHC--SG-------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHhcC--CC-------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhH
Confidence 888999999999999998888777641100 00 23478 9999999988887777799998877666776
Q ss_pred h
Q 006250 605 S 605 (654)
Q Consensus 605 ~ 605 (654)
.
T Consensus 241 ~ 241 (266)
T 2of3_A 241 Q 241 (266)
T ss_dssp H
T ss_pred H
Confidence 3
No 112
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=60.62 E-value=32 Score=41.08 Aligned_cols=99 Identities=7% Similarity=-0.038 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhcc-----CChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchH
Q 006250 411 MKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEK-----GPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTA 485 (654)
Q Consensus 411 lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~-----~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~ 485 (654)
-+..|.+|++.++.+.......-.-...++.|..+.+. ...-++..++|+++..+..-..+++ -
T Consensus 469 ~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~-----------~ 537 (1049)
T 3m1i_C 469 NINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWN-----------F 537 (1049)
T ss_dssp HHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHH-----------H
T ss_pred HHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHH-----------H
Confidence 46789999999986543321111111233344444332 2335666788998876533222222 2
Q ss_pred HHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcch
Q 006250 486 AKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFR 520 (654)
Q Consensus 486 ~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~ 520 (654)
...+++.|+..+.+.++.++..|+.|+.+++...+
T Consensus 538 l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~ 572 (1049)
T 3m1i_C 538 LRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCK 572 (1049)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 35578888888887788999999999999998543
No 113
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=58.71 E-value=49 Score=39.73 Aligned_cols=133 Identities=20% Similarity=0.231 Sum_probs=80.7
Q ss_pred cHHHHHHhhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhc----CcchhhHHHHHHH
Q 006250 438 ALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKA----DSDLLIPSIRAIG 513 (654)
Q Consensus 438 aL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~----~~~l~~~~~~alg 513 (654)
++..+..++++++..... ++++|.-..... .++ +..++.+..+++++ ++.++..|.-++|
T Consensus 357 a~~~i~~~i~~~~l~~~e-a~~~l~~~~~~~-----------~Pt----~e~l~~~~~l~~~~~~~~~~~l~~ta~La~g 420 (1056)
T 1lsh_A 357 ALLFLKRTLASEQLTSAE-ATQIVASTLSNQ-----------QAT----RESLSYARELLNTSFIRNRPILRKTAVLGYG 420 (1056)
T ss_dssp HHHHHHHHHHTTCSCHHH-HHHHHHHHHHTC-----------CCC----HHHHHHHHHHHTCHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHH-HHHHHHHhhccC-----------CCC----HHHHHHHHHHHhCcccccCHHHHHHHHHHHH
Confidence 445556667776554433 666665322111 111 44667777777643 3567788999999
Q ss_pred Hhhhcchhh----hhccHHHHHHHh----ccCCHHHHHHHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhcc---
Q 006250 514 NLARTFRAT----ETRIIGPLVNLL----DEREPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYF--- 582 (654)
Q Consensus 514 ~la~~~~~~----e~~~I~pLV~lL----~~~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~--- 582 (654)
.+++.++.. ....|+++.++| ++++.+-..-+..||+|+... ..++.|..++..
T Consensus 421 slV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p---------------~~l~~l~~~l~~~~~ 485 (1056)
T 1lsh_A 421 SLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP---------------NSIKKIQRFLPGQGK 485 (1056)
T ss_dssp HHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG---------------GGHHHHHTTSTTSSS
T ss_pred HHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh---------------hHHHHHHHhhcCccc
Confidence 999866542 123577777665 667777778899999998632 235666666532
Q ss_pred --CC--cchHHHHHHHHHHHHhC
Q 006250 583 --GE--QMIQIPALTLLCYIAIK 601 (654)
Q Consensus 583 --~~--~~~q~~Al~~L~~ia~~ 601 (654)
.+ ..+++.|+.+|..++.+
T Consensus 486 ~~~~~~~rvr~aAi~ALr~~~~~ 508 (1056)
T 1lsh_A 486 SLDEYSTRVQAEAIMALRNIAKR 508 (1056)
T ss_dssp CCCCSCHHHHHHHHHTTTTGGGT
T ss_pred cccccchHHHHHHHHHHHHhhhh
Confidence 11 12556677777666544
No 114
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=54.30 E-value=14 Score=41.24 Aligned_cols=86 Identities=17% Similarity=0.183 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcchHHHHHHcCchHHHHHhhc
Q 006250 163 MEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIVNAGVCSTFAKNLK 242 (654)
Q Consensus 163 ~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~~iv~~GaIp~Lv~LL~ 242 (654)
..+|+.||.+|+.+ ..-+.. ..++..|+..+....=+++..+.-.|..+ .+ -... -.+.+|.++..|+
T Consensus 242 APVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-~D--LL~~--Ld~Vv~aVL~GL~ 309 (800)
T 3oc3_A 242 APVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYL-KE--FVED--KDGLCRKLVSLLS 309 (800)
T ss_dssp CHHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-GG--GCCC--HHHHHHHHHHHTT
T ss_pred eehHHHHHHHHHHH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHH-HH--HHHH--HHHHHHHHHhhcC
Confidence 46899999999998 543332 34555666666666788999998889888 21 1000 2567889999999
Q ss_pred CCChhHHHHHHHHHHHHh
Q 006250 243 DGHMKVQSVVAWAVSELA 260 (654)
Q Consensus 243 s~~~~vq~~Aa~aL~nLa 260 (654)
+.+++|+..||.+|.-++
T Consensus 310 D~DDDVRAVAAetLiPIA 327 (800)
T 3oc3_A 310 SPDEDIKLLSAELLCHFP 327 (800)
T ss_dssp CSSHHHHHHHHHHHTTSC
T ss_pred CcccHHHHHHHHHhhhhc
Confidence 999999999999999999
No 115
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=54.26 E-value=1.6e+02 Score=29.95 Aligned_cols=96 Identities=10% Similarity=-0.035 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhccCCchhHHHHHhcCCHHHHH----Hhhcc-CCHHHHHHHHHHHHHhcCCcchHHHHHHc--CchHHH
Q 006250 165 EKCDAAASLVSLARDNDRYGKLIIEEGGVPPLL----KLAYE-GELEGQENAARAIGLLGRDAESVEQIVNA--GVCSTF 237 (654)
Q Consensus 165 ~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV----~LL~s-~~~~~q~~Aa~AL~nLa~~~e~~~~iv~~--GaIp~L 237 (654)
.+.-+.-.|+-++.+ +.....+.+.+.-..++ ..+.+ +.+..+.-+.+++.|+-.++..+..+... ..++.+
T Consensus 118 ~~fPvLDLlRl~~l~-p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~ 196 (304)
T 3ebb_A 118 IVFPALDILRLSIKH-PSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHA 196 (304)
T ss_dssp TCHHHHHHHHHHTTS-HHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHH
T ss_pred hHHHHHHHHHHHHcC-ccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHH
Confidence 333444444444433 44444443332223333 33332 34667889999999999988887776643 245555
Q ss_pred HHhhcCCChhHHHHHHHHHHHHhc
Q 006250 238 AKNLKDGHMKVQSVVAWAVSELAS 261 (654)
Q Consensus 238 v~LL~s~~~~vq~~Aa~aL~nLa~ 261 (654)
...+.+.+..+|..++..+.|+|.
T Consensus 197 ~~~~~~~nknl~iA~ATl~~NlAv 220 (304)
T 3ebb_A 197 IELKSGSNKNIHIALATLALNYSV 220 (304)
T ss_dssp HGGGSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCChhHHHHHHHHHHHHHH
Confidence 555556678899999999999997
No 116
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=53.45 E-value=1e+02 Score=27.56 Aligned_cols=102 Identities=13% Similarity=0.076 Sum_probs=66.6
Q ss_pred ccHHHHHHHhccCCHHHHHHHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhccCCcchHHHHHHHHHHHHhCCCc
Q 006250 525 RIIGPLVNLLDEREPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIAIKQPE 604 (654)
Q Consensus 525 ~~I~pLV~lL~~~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~ia~~~~~ 604 (654)
.++|-|+.-|++.+..+..+.+--|..+. ..+ ++++.+.|+++|.+=. -..|.++..+.+.
T Consensus 31 p~lp~LL~WLQD~NWPvA~~i~~~L~~~~-----------~~l-----~p~I~~vl~s~D~~W~---ywil~~lv~~~~~ 91 (134)
T 3ut4_A 31 PIIFDLLKWLQDYNWPIAKDILPVVVLHQ-----------SIA-----MPHILTILQGNDIMWK---YWVIKLMIPYLIY 91 (134)
T ss_dssp HHHHHHHGGGSCTTSTTHHHHHHHHHHTH-----------HHH-----HHHHHHHHHSSCHHHH---HHHHHHHGGGCCH
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHcc-----------Hhh-----HHHHHHHHHcCChHHH---HHHHHHHHHcCCH
Confidence 47888999999999999999998888762 122 4778888888888433 3556666556654
Q ss_pred hHHHHhhhhhHHHHhhhhhhhhhcCccHHhHHHHHHHHHHhhhcCC
Q 006250 605 SKTLAQEEVLIVLEWSFKQAHLVAEPSIEALLPEAKSTLATYQSRD 650 (654)
Q Consensus 605 ~~~l~~~~~l~~l~~~~~~~~~~q~~~~~~l~~~a~~~l~~y~~~~ 650 (654)
.- .....+-|+.-.. .-.+....+++-.-|+.+|+.|+..|
T Consensus 92 ~~---~~~l~~eL~rl~~--~pt~~E~~eev~e~A~~iL~~~~~~~ 132 (134)
T 3ut4_A 92 PN---KQLVKSELERLSS--LEIINEDIREIVNLSKDYLHFYYPDK 132 (134)
T ss_dssp HH---HHHHHHHHHHHHT--CCCSSGGGHHHHHHHHHHHHHHC---
T ss_pred HH---HHHHHHHHHHHHh--CCCcchHHHHHHHHHHHHHHHHcccc
Confidence 21 1223333432111 12245688899999999999998754
No 117
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=49.83 E-value=47 Score=35.01 Aligned_cols=80 Identities=10% Similarity=0.091 Sum_probs=61.8
Q ss_pred hHHHHHhcCCHHHHHHhhccC-----------CHHHHHHHHHHHHHhcCCcchHHHHHH-cCchHHHHHhhcCCChhHHH
Q 006250 183 YGKLIIEEGGVPPLLKLAYEG-----------ELEGQENAARAIGLLGRDAESVEQIVN-AGVCSTFAKNLKDGHMKVQS 250 (654)
Q Consensus 183 ~~~~I~e~G~Ip~LV~LL~s~-----------~~~~q~~Aa~AL~nLa~~~e~~~~iv~-~GaIp~Lv~LL~s~~~~vq~ 250 (654)
..+.. ..||+..|+.+|..- +...+.....+|..|..+......+.. ..+|..|+..|.+..+.++.
T Consensus 40 Wv~~F-~~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~ 118 (386)
T 2bnx_A 40 WVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMI 118 (386)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHH
T ss_pred HHHHH-HHhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHH
Confidence 34444 368899999988521 346788899999999887766665554 57899999999999999999
Q ss_pred HHHHHHHHHhcCC
Q 006250 251 VVAWAVSELASNH 263 (654)
Q Consensus 251 ~Aa~aL~nLa~~~ 263 (654)
.+...|..+|..+
T Consensus 119 ~vleLL~alc~~~ 131 (386)
T 2bnx_A 119 DAAKLLSALCILP 131 (386)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCC
Confidence 9999999888743
No 118
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=43.79 E-value=1.2e+02 Score=31.90 Aligned_cols=114 Identities=8% Similarity=0.028 Sum_probs=85.3
Q ss_pred HHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcchHHHHHHcCchHHHHHhhc-CCChhHHH
Q 006250 172 SLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIVNAGVCSTFAKNLK-DGHMKVQS 250 (654)
Q Consensus 172 aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~~iv~~GaIp~Lv~LL~-s~~~~vq~ 250 (654)
-|.+|-.++....+-.++.+||...-......+.++-+....-|...+....-. ..--...+|.+++.+. +++.++..
T Consensus 265 DLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~-~t~L~e~LPFi~~~i~~h~eDdvvY 343 (619)
T 3c2g_A 265 DLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALA-KTPLENILPFLLRLIEIHPDDEVIY 343 (619)
T ss_dssp HHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGG-TSCCTTHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHh-hccccccchHHHHHhccCCCcceEE
Confidence 344554454556788889999999999999999888888877777766432110 0011246788888885 67889999
Q ss_pred HHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccC
Q 006250 251 VVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFE 286 (654)
Q Consensus 251 ~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~ 286 (654)
...+.|+|...+..-.++..+..|+|+.|-..+..-
T Consensus 344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky 379 (619)
T 3c2g_A 344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKY 379 (619)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTS
T ss_pred ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhC
Confidence 999999999998888888888999999998887533
No 119
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=42.27 E-value=2.5e+02 Score=27.69 Aligned_cols=112 Identities=12% Similarity=0.167 Sum_probs=66.3
Q ss_pred HHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhhhhccHHHHHHHhccCCHHHHHHHHHHHHhc--------cccCCC
Q 006250 487 KAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRATETRIIGPLVNLLDEREPEVIMEATVALNKF--------ATTENY 558 (654)
Q Consensus 487 ~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~--------a~~~n~ 558 (654)
..+++.++.+....+.+++..++.=|+..+..-...-...++.|..+|++.++.|.|.+..+.+++ +..++
T Consensus 52 ~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~- 130 (257)
T 3gs3_A 52 EEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLME- 130 (257)
T ss_dssp HHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSS-
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCC-
Confidence 346677777666655677777776666555322222235788888999988999999887776554 22111
Q ss_pred CC--HHHHHHHHHCCCHHHHHHhhccCCcchHHHHHHHHHHHHh
Q 006250 559 LS--ETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIAI 600 (654)
Q Consensus 559 ~~--~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~ia~ 600 (654)
.. .++...... .--..+++++.++...+...++..+..+++
T Consensus 131 ~~~~~~~~W~~m~-~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl 173 (257)
T 3gs3_A 131 PGDSAEQAWNILS-LIKAQILDMIDNENDGIRTNAIKFLEGVVV 173 (257)
T ss_dssp CCHHHHHHHHHHH-HHHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHH-HHHHHHHHHHccCCcchHHHHHHHHHHHHH
Confidence 11 111211110 011245566766666788888888877763
No 120
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=37.66 E-value=1.4e+02 Score=30.48 Aligned_cols=100 Identities=11% Similarity=0.012 Sum_probs=67.9
Q ss_pred cccCCCHHHHHHHHHHHHHhccCCchhHHHHHhc--CCHHHHH----Hhhcc---CCHHHHHHHHHHHHHhcCCcchHHH
Q 006250 157 ILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEE--GGVPPLL----KLAYE---GELEGQENAARAIGLLGRDAESVEQ 227 (654)
Q Consensus 157 lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~--G~Ip~LV----~LL~s---~~~~~q~~Aa~AL~nLa~~~e~~~~ 227 (654)
+..+.++..++.|++.|+..-++||...+.|.+. .-+..+. .+.+. ....+++.=..+|-.|..++..
T Consensus 78 ~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~--- 154 (315)
T 3qml_C 78 LNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSED--- 154 (315)
T ss_dssp HCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT---
T ss_pred hhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh---
Confidence 4445677899999999999999999988888764 2222222 22222 2345667777888888877521
Q ss_pred HHHcCchHHHHHhhcCC--ChhHHHHHHHHHHHHh
Q 006250 228 IVNAGVCSTFAKNLKDG--HMKVQSVVAWAVSELA 260 (654)
Q Consensus 228 iv~~GaIp~Lv~LL~s~--~~~vq~~Aa~aL~nLa 260 (654)
+ ...++..|.+++... +..+|..+...+..+=
T Consensus 155 F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 155 L-PIYSTVVLQNVYERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp C---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred h-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence 1 144678888888777 7888888877776654
No 121
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=35.66 E-value=3e+02 Score=26.33 Aligned_cols=119 Identities=11% Similarity=0.118 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHhccCCchhHHHHHh-cCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcc--h-HHHHH---------
Q 006250 163 MEEKCDAAASLVSLARDNDRYGKLIIE-EGGVPPLLKLAYEGELEGQENAARAIGLLGRDAE--S-VEQIV--------- 229 (654)
Q Consensus 163 ~~~k~~Aa~aL~~La~~~~~~~~~I~e-~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e--~-~~~iv--------- 229 (654)
...+..+..||..+... ..-.+.+.. .++|..|+..|.+..+.++..+...|..+|..++ . ...|.
T Consensus 68 ~~~~~~~l~CLkalmn~-~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~ 146 (233)
T 2f31_A 68 SRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM 146 (233)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC-hHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHh
Confidence 45667788999988744 444555554 5789999999998889999999888888876532 4 33332
Q ss_pred -HcCchHHHHHhhcC-CChhHHHHHHHHHHHHh-c--CChhhH----HHHHhCCcHHHHHHhhc
Q 006250 230 -NAGVCSTFAKNLKD-GHMKVQSVVAWAVSELA-S--NHPKCQ----DHFAQNNIVRFLVSHLA 284 (654)
Q Consensus 230 -~~GaIp~Lv~LL~s-~~~~vq~~Aa~aL~nLa-~--~~~~~r----~~i~~~g~I~~LV~LL~ 284 (654)
+..-..++++.|++ .+.+.+. ++..+-|.- . .+.+.| ..+...|. ..++.-|+
T Consensus 147 ~e~~RF~~lv~~l~~~~~~e~~~-~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl-~~il~~l~ 208 (233)
T 2f31_A 147 DEVERFQPLLDGLKSGTSIALKV-GCLQLINALITPAEELDFRVHIRSELMRLGL-HQVLQELR 208 (233)
T ss_dssp HTSCTTHHHHHTTSTTSCHHHHH-HHHHHHHHHHTTCCCHHHHHHHHHHHHHTTH-HHHHHHHH
T ss_pred CCcchHHHHHHHHhcCChHHHHH-HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCh-HHHHHHHh
Confidence 23356678888875 4455554 344444542 2 223333 34445555 44445554
No 122
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=35.59 E-value=50 Score=39.36 Aligned_cols=114 Identities=10% Similarity=0.058 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHH-hh----CcHHHHHHhhc-----cCChhHHHHHHHHHHHHHhhcccChHhhhhcc
Q 006250 410 QMKAMAARALWKLSKGNLSICRNLT-ES----RALLCFAVLLE-----KGPEDVKHFSAMALMEITAVAEKNSDLRRSAF 479 (654)
Q Consensus 410 ~lk~~Aa~AL~~La~gn~~~~~~i~-e~----gaL~~L~~LL~-----~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~ 479 (654)
+-.+.|..+|+.++.|...+...+. +. ..++.+..+++ ...+-|+.-++|+++..+.--..+++
T Consensus 458 ~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~------ 531 (980)
T 3ibv_A 458 QLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESA------ 531 (980)
T ss_dssp HHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCT------
T ss_pred HHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCch------
Confidence 3568899999999987654333220 11 23455566666 56678999999999776544332221
Q ss_pred CCCchHHHHHHHHHHH--HhhhcCcchhhHHHHHHHHhhhcchhhhhccHHHHHHHh
Q 006250 480 KPTSTAAKAVLEQLLH--IVEKADSDLLIPSIRAIGNLARTFRATETRIIGPLVNLL 534 (654)
Q Consensus 480 ~~~s~~~~~vv~~L~~--ll~~~~~~l~~~~~~alg~la~~~~~~e~~~I~pLV~lL 534 (654)
....+++.++. -+.+.++.++..|+.++.++++.-+..=...+++++.-+
T Consensus 532 -----~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l 583 (980)
T 3ibv_A 532 -----AIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAML 583 (980)
T ss_dssp -----THHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHT
T ss_pred -----hHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHH
Confidence 12334455555 555666789999999999999865543223345555543
No 123
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=34.39 E-value=1.9e+02 Score=30.41 Aligned_cols=105 Identities=13% Similarity=0.200 Sum_probs=65.9
Q ss_pred HHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhhhhccHHHHHHHhccCCHHHHHHHHHHHHhccccCCCCCHHHHHHHH
Q 006250 489 VLEQLLHIVEKADSDLLIPSIRAIGNLARTFRATETRIIGPLVNLLDEREPEVIMEATVALNKFATTENYLSETHSKAII 568 (654)
Q Consensus 489 vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv 568 (654)
+++.|+.+....+.+++..++.-|+..+..-...-..+++.|..||.+.++.|.+.+..+.+++ | +.--++++
T Consensus 64 fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tsl-----Y--pl~f~~i~ 136 (386)
T 3o2t_A 64 FLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRDENVNVVKKAILTMTQL-----Y--KVALQWMV 136 (386)
T ss_dssp GHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH-----H--HHHHHHHH
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-----H--HHHHHHHh
Confidence 5667777777666778877776666555422211234688888899888999999887776654 1 11123333
Q ss_pred HCCCH---------------HHHHHhhccCCcchHHHHHHHHHHHHh
Q 006250 569 NAGGV---------------KHLIQLVYFGEQMIQIPALTLLCYIAI 600 (654)
Q Consensus 569 ~~ggi---------------~~Lv~LL~~~~~~~q~~Al~~L~~ia~ 600 (654)
..++. ..+++++.++...+.+.++..+..+++
T Consensus 137 ~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl 183 (386)
T 3o2t_A 137 KSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIV 183 (386)
T ss_dssp HC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHH
Confidence 33332 245556666666688888888877763
No 124
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=34.13 E-value=47 Score=40.03 Aligned_cols=105 Identities=17% Similarity=0.192 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHHHHhccCCch--hHHHHHhcCCHHHHHHhhccCC---HH--HHHHHHHHHHHhcCCcchHHHHHHcCch
Q 006250 162 SMEEKCDAAASLVSLARDNDR--YGKLIIEEGGVPPLLKLAYEGE---LE--GQENAARAIGLLGRDAESVEQIVNAGVC 234 (654)
Q Consensus 162 ~~~~k~~Aa~aL~~La~~~~~--~~~~I~e~G~Ip~LV~LL~s~~---~~--~q~~Aa~AL~nLa~~~e~~~~iv~~GaI 234 (654)
+....+.++++++.+++.-.. -+..+. ..|+-|+.|.+... .. +.....|.++..+..-....... ...+
T Consensus 492 sW~~lea~~~aigaIag~~~~~~E~~~Lp--~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L-~~vl 568 (1073)
T 3gjx_A 492 SWKNLNTLCWAIGSISGAMHEEDEKRFLV--TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFL-KTVV 568 (1073)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHH--HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH-HHHH
T ss_pred CHHHHhHHHHHHHHHHCcCCcccccchHH--HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHH-HHHH
Confidence 456677789999999754222 222332 46777888776542 12 23333456665443211111121 2245
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHh
Q 006250 235 STFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQ 272 (654)
Q Consensus 235 p~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~ 272 (654)
..|++.+.+.++++|..|+.|+..++. +|++.++.
T Consensus 569 ~~L~~~m~~~~~~vq~aA~~af~~i~~---~C~~~lv~ 603 (1073)
T 3gjx_A 569 NKLFEFMHETHDGVQDMACDTFIKIAQ---KCRRHFVQ 603 (1073)
T ss_dssp HHHHHHTTCCSTTHHHHHHHHHHHHHH---HTGGGGTS
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHH---HHHHHHhh
Confidence 556666777789999999999999997 45555543
No 125
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=34.08 E-value=3.9e+02 Score=27.81 Aligned_cols=122 Identities=12% Similarity=0.094 Sum_probs=79.0
Q ss_pred CHHHHHHHHHHHHHhccCCchhHHHHHh-cCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCc--ch-HHHHH--------
Q 006250 162 SMEEKCDAAASLVSLARDNDRYGKLIIE-EGGVPPLLKLAYEGELEGQENAARAIGLLGRDA--ES-VEQIV-------- 229 (654)
Q Consensus 162 ~~~~k~~Aa~aL~~La~~~~~~~~~I~e-~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~--e~-~~~iv-------- 229 (654)
+...+.....||+.+... ..-...|.. ..+|..|+..|.+..+.++..+...|..+|..+ ++ ...|.
T Consensus 133 d~~~q~~~l~CLkalmN~-~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~ 211 (383)
T 3eg5_B 133 DSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE 211 (383)
T ss_dssp CHHHHHHHHHHHHHHTSS-HHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcc-hhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHH
Confidence 456677888999998844 444555555 478999999999999999999999998888653 33 33332
Q ss_pred --HcCchHHHHHhhcC-CChhHHHHHHHHHHHHhcC---ChhhH----HHHHhCCcHHHHHHhhccC
Q 006250 230 --NAGVCSTFAKNLKD-GHMKVQSVVAWAVSELASN---HPKCQ----DHFAQNNIVRFLVSHLAFE 286 (654)
Q Consensus 230 --~~GaIp~Lv~LL~s-~~~~vq~~Aa~aL~nLa~~---~~~~r----~~i~~~g~I~~LV~LL~~~ 286 (654)
+..-..+++..|++ .+.+.+. ++..+-|.--+ +.+.| ..+...|..+.+- -|+..
T Consensus 212 ~~e~~RF~~lv~~L~~~~~~e~~~-~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~-~lr~~ 276 (383)
T 3eg5_B 212 MDEVERFQPLLDGLKSGTSIALKV-GCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQ-ELREI 276 (383)
T ss_dssp HHTSCTTHHHHHTTSTTSCHHHHH-HHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHH-HHTTS
T ss_pred hCCCCcHHHHHHHHHccCcHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHH-HHhcC
Confidence 33457888999987 4555555 44555554322 23333 3444566555444 46543
No 126
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=30.41 E-value=1.7e+02 Score=30.25 Aligned_cols=112 Identities=12% Similarity=0.106 Sum_probs=85.6
Q ss_pred hHHHHcccccCCCHHHHHHHHHHHHHhccCCchhHHHHHhc---CCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcchHH
Q 006250 150 LIWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEE---GGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVE 226 (654)
Q Consensus 150 ~v~~lV~lL~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~---G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e~~~ 226 (654)
.+|.+...++.++-++-.+|..++..+-............. -.....-+||.+++-..+..+..-|+.|-.+..|..
T Consensus 165 ~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~ 244 (341)
T 1upk_A 165 QFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFT 244 (341)
T ss_dssp GGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHH
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHH
Confidence 36888899999999999999999999853323333333322 235567789999999999999999999998877755
Q ss_pred HHH----HcCchHHHHHhhcCCChhHHHHHHHHHHHHhc
Q 006250 227 QIV----NAGVCSTFAKNLKDGHMKVQSVVAWAVSELAS 261 (654)
Q Consensus 227 ~iv----~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~ 261 (654)
.|. +..-+-.+..+|++.+..+|-.|-...--...
T Consensus 245 vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 245 IMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeee
Confidence 443 34457788889999999999988877765555
No 127
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=30.33 E-value=43 Score=37.50 Aligned_cols=100 Identities=16% Similarity=0.189 Sum_probs=68.5
Q ss_pred CcHHHHHHhhccCChhHHHHHHHHHHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHH---HHHHH
Q 006250 437 RALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPS---IRAIG 513 (654)
Q Consensus 437 gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~---~~alg 513 (654)
+.++++..-|.+.++||+.-||.+|..|+ .. .....+++.++..|.+-| ++-... ..-|+
T Consensus 299 ~Vv~aVL~GL~D~DDDVRAVAAetLiPIA-~p---------------~~l~~LL~iLWd~L~~LD-DLSASTgSVMdLLA 361 (800)
T 3oc3_A 299 GLCRKLVSLLSSPDEDIKLLSAELLCHFP-IT---------------DSLDLVLEKCWKNIESEE-LISVSKTSNLSLLT 361 (800)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHTTSC-CS---------------STHHHHHHHHHHHHHTCC-SCCTTHHHHHHHHH
T ss_pred HHHHHHHhhcCCcccHHHHHHHHHhhhhc-ch---------------hhHHHHHHHHHHHhhhhc-ccchhhHHHHHHHH
Confidence 56778888899999999999999998776 11 112457778888887653 332222 22233
Q ss_pred Hhhhcchh--hhhccHHHHHHHhccCCHHHHHHHHHHHHhcc
Q 006250 514 NLARTFRA--TETRIIGPLVNLLDEREPEVIMEATVALNKFA 553 (654)
Q Consensus 514 ~la~~~~~--~e~~~I~pLV~lL~~~~~~v~~eAa~AL~~~a 553 (654)
.|...... .....||.|.-.|++.-..|++.+..+|..|.
T Consensus 362 kL~s~p~~a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 362 KIYRENPELSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp HHHHHCTTCCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred HHHcCCcccccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Confidence 33332111 11246888899999999999999999998885
No 128
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=27.67 E-value=87 Score=28.76 Aligned_cols=70 Identities=4% Similarity=-0.101 Sum_probs=49.4
Q ss_pred hHHHHcccccCCCHHHHHHHHHHHHHhccC-CchhHHHHHhcCCHHHHHHhhcc-CCHHHHHHHHHHHHHhc
Q 006250 150 LIWEQIAILHTGSMEEKCDAAASLVSLARD-NDRYGKLIIEEGGVPPLLKLAYE-GELEGQENAARAIGLLG 219 (654)
Q Consensus 150 ~v~~lV~lL~s~~~~~k~~Aa~aL~~La~~-~~~~~~~I~e~G~Ip~LV~LL~s-~~~~~q~~Aa~AL~nLa 219 (654)
.++.+.+.|+++++.++..|...|-.+.++ .+.....|....-+.-|+++++. .++.+++.....|...+
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 344457888999999999999888888755 35567778777788888888864 34566665555444433
No 129
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=26.82 E-value=1.3e+02 Score=36.08 Aligned_cols=96 Identities=8% Similarity=-0.022 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCC-----hhHHHHHHHHHHHHHhhcccChHhhhhccCCCchH
Q 006250 411 MKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGP-----EDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTA 485 (654)
Q Consensus 411 lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~-----~~v~~~aa~AL~~Iaa~ae~~~~lrr~a~~~~s~~ 485 (654)
-...+.+|+|.++..-.+....-.=...++.|+.|.+... .-+..+.+|.++.-+.--..+++.
T Consensus 495 ~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~----------- 563 (1073)
T 3gjx_A 495 NLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKF----------- 563 (1073)
T ss_dssp HHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHH-----------
T ss_pred HHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHH-----------
Confidence 3567899999998322211111111234556666666553 235566667776655443333332
Q ss_pred HHHHHHHHHHHhhhcCcchhhHHHHHHHHhhh
Q 006250 486 AKAVLEQLLHIVEKADSDLLIPSIRAIGNLAR 517 (654)
Q Consensus 486 ~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~ 517 (654)
-+.++..|++.+...+++++..|+.|+..++.
T Consensus 564 L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~ 595 (1073)
T 3gjx_A 564 LKTVVNKLFEFMHETHDGVQDMACDTFIKIAQ 595 (1073)
T ss_dssp HHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 24578888888888789999999999988875
No 130
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=26.36 E-value=97 Score=28.44 Aligned_cols=29 Identities=21% Similarity=0.190 Sum_probs=15.7
Q ss_pred HHHhhccCCcchHHHHHHHHHHHHhCCCc
Q 006250 576 LIQLVYFGEQMIQIPALTLLCYIAIKQPE 604 (654)
Q Consensus 576 Lv~LL~~~~~~~q~~Al~~L~~ia~~~~~ 604 (654)
|..-|.++++.+|..||.+|-.++.|.+.
T Consensus 57 l~krl~~~n~~vql~AL~LLd~~vkNcG~ 85 (163)
T 1x5b_A 57 IMKRVNHKVPHVALQALTLLGACVANCGK 85 (163)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHhhH
Confidence 33334445555566666666666555554
No 131
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=24.92 E-value=1e+02 Score=27.85 Aligned_cols=69 Identities=9% Similarity=0.012 Sum_probs=53.5
Q ss_pred HHHHcccccCCCHHHHHHHHHHHHHhccC-CchhHHHHHhcCCHHHHHHhhcc------CCHHHHHHHHHHHHHhc
Q 006250 151 IWEQIAILHTGSMEEKCDAAASLVSLARD-NDRYGKLIIEEGGVPPLLKLAYE------GELEGQENAARAIGLLG 219 (654)
Q Consensus 151 v~~lV~lL~s~~~~~k~~Aa~aL~~La~~-~~~~~~~I~e~G~Ip~LV~LL~s------~~~~~q~~Aa~AL~nLa 219 (654)
++.+.+.|+++++.++..|...|-.+.++ .+.....|.....+.-|++++.. .+..++......|...+
T Consensus 40 ~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 40 PWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 44457888999999999999999888765 35677888888888899999874 35678877766666555
No 132
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=24.25 E-value=9.2e+02 Score=28.31 Aligned_cols=125 Identities=11% Similarity=0.034 Sum_probs=73.6
Q ss_pred cCCCHHHHHHHHHHHHHhccCCchhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhcCC---cchHHHHHHcCchH
Q 006250 159 HTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRD---AESVEQIVNAGVCS 235 (654)
Q Consensus 159 ~s~~~~~k~~Aa~aL~~La~~~~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~---~e~~~~iv~~GaIp 235 (654)
.+.++..+..+..+|.....- -....|+..+.++.+.++|.. ++.+..|+.+|..|.+. ++.+..++..=.+.
T Consensus 203 ~~~~~~l~~~~L~~l~s~i~w--i~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~ 278 (980)
T 3ibv_A 203 NAKNYGTVGLCLQVYAQWVSW--ININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLN 278 (980)
T ss_dssp HTTCHHHHHHHHHHHHHHTTT--SCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhh--cCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHH
Confidence 346788888899999988753 235677777888888888875 78999999999998854 34454444432223
Q ss_pred HHHHhhc--CCChhHHHHHHHHHHHHhc------CCh-----hhHHHHHh--CCcHHHHHHhhccCc
Q 006250 236 TFAKNLK--DGHMKVQSVVAWAVSELAS------NHP-----KCQDHFAQ--NNIVRFLVSHLAFET 287 (654)
Q Consensus 236 ~Lv~LL~--s~~~~vq~~Aa~aL~nLa~------~~~-----~~r~~i~~--~g~I~~LV~LL~~~~ 287 (654)
..+.-+. ..+.+..+.-+..+..++. ..+ +.+..... .+.++.++..+..+.
T Consensus 279 ~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~ 345 (980)
T 3ibv_A 279 LFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDY 345 (980)
T ss_dssp HHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSS
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCc
Confidence 3333332 3566655444444433321 111 11111111 246777777777653
No 133
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=23.25 E-value=1.1e+02 Score=27.27 Aligned_cols=69 Identities=6% Similarity=-0.054 Sum_probs=52.1
Q ss_pred HHHHcccccCCCHHHHHHHHHHHHHhccCC-chhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhc
Q 006250 151 IWEQIAILHTGSMEEKCDAAASLVSLARDN-DRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLG 219 (654)
Q Consensus 151 v~~lV~lL~s~~~~~k~~Aa~aL~~La~~~-~~~~~~I~e~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa 219 (654)
++.+.+.|+++++.++..|...|-.+.++. +.....|.....+.-|+++++..++.++......+...+
T Consensus 44 ~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 44 LRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 344478889999999999988888776543 455667777777888888887777888887777776655
No 134
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=22.27 E-value=1e+02 Score=28.56 Aligned_cols=69 Identities=9% Similarity=-0.036 Sum_probs=52.0
Q ss_pred HHHHcccccCCCHHHHHHHHHHHHHhccCC-chhHHHHHhcCCHHHHHHhhcc------CCHHHHHHHHHHHHHhc
Q 006250 151 IWEQIAILHTGSMEEKCDAAASLVSLARDN-DRYGKLIIEEGGVPPLLKLAYE------GELEGQENAARAIGLLG 219 (654)
Q Consensus 151 v~~lV~lL~s~~~~~k~~Aa~aL~~La~~~-~~~~~~I~e~G~Ip~LV~LL~s------~~~~~q~~Aa~AL~nLa 219 (654)
++.+.+.|+++++.++..|...|-.+.++. +.....|.+..-+.-|++++.. .+..+++.....|...+
T Consensus 52 ~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 52 VRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 444578899999999999999998887653 5667788888888889998863 23677777666665544
No 135
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=21.86 E-value=1.2e+02 Score=27.00 Aligned_cols=69 Identities=13% Similarity=0.113 Sum_probs=44.2
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHhcCC--cchHHHHHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhc
Q 006250 193 VPPLLKLAYEGELEGQENAARAIGLLGRD--AESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELAS 261 (654)
Q Consensus 193 Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~--~e~~~~iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~ 261 (654)
+..|.+-|+++++..|..|...|-.+..+ +.-...|.....+.-|+++++..++.|+......+...+.
T Consensus 44 ~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 44 LRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 44455556666777777776666555533 3334455555556667777766778888888777777664
No 136
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=21.11 E-value=7e+02 Score=25.80 Aligned_cols=120 Identities=11% Similarity=0.092 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHhccCCchhHHHHHh-cCCHHHHHHhhccCCHHHHHHHHHHHHHhcCCcc--h-HHHH----------
Q 006250 163 MEEKCDAAASLVSLARDNDRYGKLIIE-EGGVPPLLKLAYEGELEGQENAARAIGLLGRDAE--S-VEQI---------- 228 (654)
Q Consensus 163 ~~~k~~Aa~aL~~La~~~~~~~~~I~e-~G~Ip~LV~LL~s~~~~~q~~Aa~AL~nLa~~~e--~-~~~i---------- 228 (654)
......+..||+.+... ..-.+.|.. .++|..|+..|.+..+.++..+...|..+|..++ . ...|
T Consensus 72 ~~~~~~~l~CLkalmN~-~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~ 150 (386)
T 2bnx_A 72 SRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM 150 (386)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC-HHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHh
Confidence 45667788899988744 444444544 4789999999998889998888888887776532 3 3322
Q ss_pred HHcCchHHHHHhhcC-CChhHHHHHHHHHHHH-hcC--Chh----hHHHHHhCCcHHHHHHhhcc
Q 006250 229 VNAGVCSTFAKNLKD-GHMKVQSVVAWAVSEL-ASN--HPK----CQDHFAQNNIVRFLVSHLAF 285 (654)
Q Consensus 229 v~~GaIp~Lv~LL~s-~~~~vq~~Aa~aL~nL-a~~--~~~----~r~~i~~~g~I~~LV~LL~~ 285 (654)
-+..-..+||+.|.. .+.+.+. ++..+-|. ... +.+ .|..+...|.-+ ++.-|+.
T Consensus 151 ~e~~RF~~lv~~l~~~~~~e~~~-a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~-il~~Lr~ 213 (386)
T 2bnx_A 151 DEVERFQPLLDGLKSGTSIALKV-GCLQLINALITPAEELDFRVHIRSELMRLGLHQ-VLQELRE 213 (386)
T ss_dssp HTSCTTHHHHHHTSTTSCHHHHH-HHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHH-HHHHHTT
T ss_pred CchhhHHHHHHHHHcCChHHHHH-HHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHH-HHHHHhc
Confidence 233456678888874 4455554 34444443 221 223 344455565544 4455554
No 137
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=21.09 E-value=37 Score=33.63 Aligned_cols=101 Identities=10% Similarity=-0.005 Sum_probs=64.0
Q ss_pred CCCHHHHHHHHHHHHHhccCCch-hHHHHHhcCCHHHHHHhhcc--------CCHHHHHHHHHHHHHhcCCc-chHHHHH
Q 006250 160 TGSMEEKCDAAASLVSLARDNDR-YGKLIIEEGGVPPLLKLAYE--------GELEGQENAARAIGLLGRDA-ESVEQIV 229 (654)
Q Consensus 160 s~~~~~k~~Aa~aL~~La~~~~~-~~~~I~e~G~Ip~LV~LL~s--------~~~~~q~~Aa~AL~nLa~~~-e~~~~iv 229 (654)
++++..+.-+++++.|+-.+ +. .++.+........+++.+.+ .+..++..++..+.|++..- ..+.
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~-~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~--- 176 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNN-ENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS--- 176 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTC-TTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---
T ss_pred CCchhHHHHHHHHHHHcccC-CchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---
Confidence 55778889999999999866 55 46666544335555554421 23568888999999998531 1010
Q ss_pred HcCchHHHHHhhcC---------CChhHHHHHHHHHHHHhcCCh
Q 006250 230 NAGVCSTFAKNLKD---------GHMKVQSVVAWAVSELASNHP 264 (654)
Q Consensus 230 ~~GaIp~Lv~LL~s---------~~~~vq~~Aa~aL~nLa~~~~ 264 (654)
+....+.+++.+.. .+++....+.-||++|...++
T Consensus 177 ~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~ 220 (253)
T 3gae_A 177 DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 220 (253)
T ss_dssp CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSG
T ss_pred hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcH
Confidence 12234555665552 256777778888888886443
Done!