BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006251
(654 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O1S|A Chain A, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|B Chain B, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|C Chain C, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|D Chain D, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
Length = 621
Score = 441 bits (1135), Expect = e-124, Method: Compositional matrix adjust.
Identities = 231/497 (46%), Positives = 311/497 (62%), Gaps = 14/497 (2%)
Query: 141 PLLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFN 200
P L ++ ++ L E L +L ELR +++SVS++ GH ++ LG VELT+ALH V+N
Sbjct: 9 PTLALVDSTQELRLLPKESLPKLCDELRRYLLDSVSRSSGHFASGLGTVELTVALHYVYN 68
Query: 201 TPDDKIIWDVGHQAYVHKILTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSIS 260
TP D++IWDVGHQAY HKILTGRR ++ T+R+ GL FP R ES +D GHSSTSIS
Sbjct: 69 TPFDQLIWDVGHQAYPHKILTGRRDKIGTIRQKGGLHPFPWRGESEYDVLSVGHSSTSIS 128
Query: 261 AGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPT 320
AG+G+AVA + GKN + VIGDGA+TAG A+EA N+AG + + +V+LNDN+
Sbjct: 129 AGIGIAVAAEKEGKNRRTVCVIGDGAITAGXAFEAXNHAGDIRPDXLVILNDNEX----- 183
Query: 321 ATLDGPATPVGXXXXXXXXXXXXTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLIS 380
+ VG + LRE K + + E+ + +E+ +G +
Sbjct: 184 ----SISENVGALNNHLAQLLSGKLYSSLREGGKKVFSGVP-PIKELLKRTEEHIKGXVV 238
Query: 381 ASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAA 440
T FEELG YIGPVDGH+V L+T + +++ GP +H+ T+KG+GY PAE
Sbjct: 239 PG--TLFEELGFNYIGPVDGHDVLGLITTLKNXRDLK--GPQFLHIXTKKGRGYEPAEKD 294
Query: 441 ADRMHGVVKFDPKTGKQFKTKSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGLNY 500
H V KFDP +G K+ +Y++ F + L + A D+K+ AI A G+G
Sbjct: 295 PITFHAVPKFDPSSGCLPKSSGGLPSYSKIFGDWLCETAAKDNKLXAITPAXREGSGXVE 354
Query: 501 FQKRFPDRCFDVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPV 560
F ++FPDR FDV IAEQHAVTFAAGLA G KP AIYS+FLQR YDQV+HDV +QKLPV
Sbjct: 355 FSRKFPDRYFDVAIAEQHAVTFAAGLAIGGYKPIVAIYSTFLQRAYDQVLHDVAIQKLPV 414
Query: 561 RFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCF 620
FA+DRAG+VGADG TH GAFD++++ C+P V+ PSDE E + T +D PS
Sbjct: 415 LFAIDRAGIVGADGQTHQGAFDLSYLRCIPEXVIXTPSDENECRQXLYTGYHYNDGPSAV 474
Query: 621 RFPRGNGIGAVLPPNNK 637
R+PRGN +G L P K
Sbjct: 475 RYPRGNAVGVELTPLEK 491
>pdb|2O1X|A Chain A, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|B Chain B, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|C Chain C, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|D Chain D, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
Length = 629
Score = 382 bits (981), Expect = e-106, Method: Compositional matrix adjust.
Identities = 207/487 (42%), Positives = 296/487 (60%), Gaps = 14/487 (2%)
Query: 140 TPLLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVF 199
TPLLD I+ P +K LS E L L ELR +IV S+ G HL+++LG V++ ALH V
Sbjct: 10 TPLLDQIHGPKDLKRLSREQLPALTEELRGEIVRVCSRGGLHLASSLGAVDIITALHYVL 69
Query: 200 NTPDDKIIWDVGHQAYVHKILTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSI 259
++P D+I++DVGHQAY HKILTGRR +M ++K G++GF K ES HDA GH+STS+
Sbjct: 70 DSPRDRILFDVGHQAYAHKILTGRRDQMADIKKEGGISGFTKVSESEHDAITVGHASTSL 129
Query: 260 SAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLP 319
+ LGMA+ARD GK+ +V +VIGDG++T G A A+N G + +++VLNDN ++S+
Sbjct: 130 TNALGMALARDAQGKDFHVAAVIGDGSLTGGMALAALNTIGDMGRKMLIVLNDN-EMSI- 187
Query: 320 TATLDGPATPVGXXXXXXXXXXXXTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLI 379
+ VG F++ A K + + + ++ R
Sbjct: 188 -------SENVGAMNKFMRGLQVQKWFQEGEGAGKKAVEAVSKPLADFMSRAKNSTRHFF 240
Query: 380 SASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEA 439
+ F +G+ Y+GPVDGHNV++LV + +R+ ++ GP ++H+VT KGKG AEA
Sbjct: 241 DPASVNPFAAMGVRYVGPVDGHNVQELVWLLERLVDL--DGPTILHIVTTKGKGLSYAEA 298
Query: 440 AADRMHGVVKFDPKTGKQFKTKSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGLN 499
HG KFDP TG+ S +++ F E++ + A+TD + + AM G+GL
Sbjct: 299 DPIYWHGPAKFDPATGEY--VPSSAYSWSAAFGEAVTEWAKTDPRTFVVTPAMREGSGLV 356
Query: 500 YFQKRFPDRCFDVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLP 559
F + P R DVGIAE+ AVT AAG+A +G++P AIYS+FLQR YDQV+HDV ++ L
Sbjct: 357 EFSRVHPHRYLDVGIAEEVAVTTAAGMALQGMRPVVAIYSTFLQRAYDQVLHDVAIEHLN 416
Query: 560 VRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSC 619
V F +DRAG+VGADG TH G FD++F+ +P + + P D AEL M+ A D P
Sbjct: 417 VTFCIDRAGIVGADGATHNGVFDLSFLRSIPGVRIGLPKDAAELRGMLKYAQT-HDGPFA 475
Query: 620 FRFPRGN 626
R+PRGN
Sbjct: 476 IRYPRGN 482
>pdb|3MOS|A Chain A, The Structure Of Human Transketolase
Length = 616
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 107/487 (21%), Positives = 191/487 (39%), Gaps = 58/487 (11%)
Query: 160 LEQLAAELRADIVNSVSKTG-GHLSANLGVVEL--TLALHRVF-------NTPDDKIIWD 209
L+ A LR + + + G GH ++ E+ L H + N +D+ +
Sbjct: 13 LKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKSQDPRNPHNDRFVLS 72
Query: 210 VGHQA------YVHKILTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGL 263
GH A + +N + +S L G P +++ D ++ S+ GL
Sbjct: 73 KGHAAPILYAVWAEAGFLAEAELLNLRKISSDLDGHPVPKQAFTDV-----ATGSLGQGL 127
Query: 264 GMAVARDILGK-----NNNVISVIGDGAMTAGQAYEAMNNAGF--LDANLIVVLNDNKQV 316
G A GK + V ++GDG ++ G +EAM A LD NL+ +L+ N+
Sbjct: 128 GAACGMAYTGKYFDKASYRVYCLLGDGELSEGSVWEAMAFASIYKLD-NLVAILDINRLG 186
Query: 317 SLPTATLDGPATPVGXXXXXXXXXXXXTNFRKLREAAKSITKQIGGQTHEVAAKVDEYAR 376
A L + + E + K G H+ A + + +
Sbjct: 187 QSDPAPLQHQMDIYQKRCEAFGWHAIIVDGHSVEE----LCKAFGQAKHQPTAIIAKTFK 242
Query: 377 GLISASGSTFFEELGLYYIGPVDGHNVEDLVT-IFQRVKEMPAPGPVLIHVVTEKGKGYP 435
G G T E+ ++ P+ + E ++ I+ +++ + T + P
Sbjct: 243 G----RGITGVEDKESWHGKPLPKNMAEQIIQEIYSQIQSKKKI------LATPPQEDAP 292
Query: 436 PAEAAADRMHGVVKFDPKTGKQFKTKSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGG 495
+ A RM + + K G + T+ + + ++L K D+I+A+
Sbjct: 293 SVDIANIRMPSLPSY--KVGDKIATR-------KAYGQALAKLGHASDRIIALDGDTKNS 343
Query: 496 TGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLASEG-VKPFCAIYSSFLQRGYDQVVHDVD 554
T F+K PDR + IAEQ+ V+ A G A+ PFC+ +++F R +DQ +
Sbjct: 344 TFSEIFKKEHPDRFIECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQ-IRMAA 402
Query: 555 LQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVI 613
+ + + G+ +G DGP+ D+ +P V PSD V AA
Sbjct: 403 ISESNINLCGSHCGVSIGEDGPSQMALEDLAMFRSVPTSTVFYPSDGVATEKAVELAA-- 460
Query: 614 DDRPSCF 620
+ + CF
Sbjct: 461 NTKGICF 467
>pdb|3OOY|A Chain A, Crystal Structure Of Human Transketolase (Tkt)
pdb|3OOY|B Chain B, Crystal Structure Of Human Transketolase (Tkt)
Length = 616
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 107/487 (21%), Positives = 191/487 (39%), Gaps = 58/487 (11%)
Query: 160 LEQLAAELRADIVNSVSKTG-GHLSANLGVVEL--TLALHRVF-------NTPDDKIIWD 209
L+ A LR + + + G GH ++ E+ L H + N +D+ +
Sbjct: 11 LKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKSQDPRNPHNDRFVLS 70
Query: 210 VGHQA------YVHKILTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGL 263
GH A + +N + +S L G P +++ D ++ S+ GL
Sbjct: 71 KGHAAPILYAVWAEAGFLAEAELLNLRKISSDLDGHPVPKQAFTDV-----ATGSLGQGL 125
Query: 264 GMAVARDILGK-----NNNVISVIGDGAMTAGQAYEAMNNAGF--LDANLIVVLNDNKQV 316
G A GK + V ++GDG ++ G +EAM A LD NL+ +L+ N+
Sbjct: 126 GAACGMAYTGKYFDKASYRVYCLLGDGELSEGSVWEAMAFASIYKLD-NLVAILDINRLG 184
Query: 317 SLPTATLDGPATPVGXXXXXXXXXXXXTNFRKLREAAKSITKQIGGQTHEVAAKVDEYAR 376
A L + + E + K G H+ A + + +
Sbjct: 185 QSDPAPLQHQMDIYQKRCEAFGWHAIIVDGHSVEE----LCKAFGQAKHQPTAIIAKTFK 240
Query: 377 GLISASGSTFFEELGLYYIGPVDGHNVEDLVT-IFQRVKEMPAPGPVLIHVVTEKGKGYP 435
G G T E+ ++ P+ + E ++ I+ +++ + T + P
Sbjct: 241 G----RGITGVEDKESWHGKPLPKNMAEQIIQEIYSQIQSKKKI------LATPPQEDAP 290
Query: 436 PAEAAADRMHGVVKFDPKTGKQFKTKSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGG 495
+ A RM + + K G + T+ + + ++L K D+I+A+
Sbjct: 291 SVDIANIRMPSLPSY--KVGDKIATR-------KAYGQALAKLGHASDRIIALDGDTKNS 341
Query: 496 TGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLASEG-VKPFCAIYSSFLQRGYDQVVHDVD 554
T F+K PDR + IAEQ+ V+ A G A+ PFC+ +++F R +DQ +
Sbjct: 342 TFSEIFKKEHPDRFIECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQ-IRMAA 400
Query: 555 LQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVI 613
+ + + G+ +G DGP+ D+ +P V PSD V AA
Sbjct: 401 ISESNINLCGSHCGVSIGEDGPSQMALEDLAMFRSVPTSTVFYPSDGVATEKAVELAA-- 458
Query: 614 DDRPSCF 620
+ + CF
Sbjct: 459 NTKGICF 465
>pdb|3UK1|A Chain A, Crystal Structure Of A Transketolase From Burkholderia
Thailandensis With An Oxidized Cysteinesulfonic Acid In
The Active Site
pdb|3UK1|B Chain B, Crystal Structure Of A Transketolase From Burkholderia
Thailandensis With An Oxidized Cysteinesulfonic Acid In
The Active Site
Length = 711
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Query: 530 GVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAM--DRAGLVGADGPTHCGAFDVTFMS 587
G KPF + +F + + L K+P F D GL G DGPTH V +
Sbjct: 472 GYKPFGGTFLTFSDYSRN-ALRVAALMKVPSIFVFTHDSIGL-GEDGPTHQSVEHVASLR 529
Query: 588 CLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGN 626
+PN+ V P+D E + T AV PSC F R N
Sbjct: 530 LIPNLDVWRPADTVETA-VAWTYAVAHQHPSCLIFSRQN 567
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 85/209 (40%), Gaps = 29/209 (13%)
Query: 138 PPTP-LLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSK-TGGHLSANLGVVELTLAL 195
PP P LD+ + + M S +A +RA +++V + GH +G+ E+ +AL
Sbjct: 23 PPVPRFLDSFS-GLDMTTSSPASTTLMANAIRALAMDAVQQANSGHPGMPMGMAEIGVAL 81
Query: 196 ---HRVFNTPD------DKIIWDVGHQA---YVHKILTGRRSRMNTMRKTSGL----AGF 239
H N + D+ + GH + Y LTG + ++ L G
Sbjct: 82 WSRHLKHNPTNPHWADRDRFVLSNGHGSMLLYSLLHLTGYDLPIEELKNFRQLHSKTPGH 141
Query: 240 PKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNN----------VISVIGDGAMTA 289
P+ + G ++ +GMA+ +L N +GDG +
Sbjct: 142 PEYGITPGVETTTGPLGQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGXLME 201
Query: 290 GQAYEAMNNAGFLDANLIVVLNDNKQVSL 318
G ++EA + AG L N ++ L D+ +S+
Sbjct: 202 GISHEACSLAGTLKLNKLIALYDDNGISI 230
>pdb|3UPT|A Chain A, Crystal Structure Of A Transketolase From Burkholderia
Pseudomallei Bound To Tpp, Calcium And
Ribose-5-Phosphate
pdb|3UPT|B Chain B, Crystal Structure Of A Transketolase From Burkholderia
Pseudomallei Bound To Tpp, Calcium And
Ribose-5-Phosphate
Length = 711
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Query: 530 GVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAM--DRAGLVGADGPTHCGAFDVTFMS 587
G KPF + +F + + L K+P F D GL G DGPTH V +
Sbjct: 472 GYKPFGGTFLTFSDYSRN-ALRVAALMKVPSIFVFTHDSIGL-GEDGPTHQSVEHVASLR 529
Query: 588 CLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGN 626
+PN+ V P+D E + T AV PSC F R N
Sbjct: 530 LIPNLDVWRPADTVETA-VAWTYAVAHQHPSCLIFSRQN 567
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 85/209 (40%), Gaps = 29/209 (13%)
Query: 138 PPTP-LLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSK-TGGHLSANLGVVELTLAL 195
PP P LD+ + + M S +A +RA +++V + GH +G+ E+ +AL
Sbjct: 23 PPVPRFLDSFS-GLDMTTSSPASTTLMANAIRALAMDAVQQANSGHPGMPMGMAEIGVAL 81
Query: 196 ---HRVFNTPD------DKIIWDVGHQA---YVHKILTGRRSRMNTMRKTSGL----AGF 239
H N + D+ + GH + Y LTG + ++ L G
Sbjct: 82 WSRHLKHNPTNPHWADRDRFVLSNGHGSMLLYSLLHLTGYDLPIEELKNFRQLHSKTPGH 141
Query: 240 PKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNN----------VISVIGDGAMTA 289
P+ + G ++ +GMA+ +L N +GDG +
Sbjct: 142 PEYGITPGVETTTGPLGQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGCLME 201
Query: 290 GQAYEAMNNAGFLDANLIVVLNDNKQVSL 318
G ++EA + AG L N ++ L D+ +S+
Sbjct: 202 GISHEACSLAGTLKLNKLIALYDDNGISI 230
>pdb|1UM9|B Chain B, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UM9|D Chain D, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UMB|B Chain B, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMB|D Chain D, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMC|B Chain B, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMC|D Chain D, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMD|B Chain B, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
pdb|1UMD|D Chain D, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
Length = 324
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 465 LTYTQYFAESLIKEAETDDKIVAIHAAMG--GGTGL---NYFQKRFPDRCFDVGIAEQHA 519
+T Q +L +E D ++V + +G GG L QK PDR D ++E
Sbjct: 4 MTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAI 63
Query: 520 VTFAAGLASEGVKPFCAI-YSSFLQRGYDQVVHDV 553
V A G+A+ G++P I ++ ++ G+DQ+V V
Sbjct: 64 VGAALGMAAHGLRPVAEIQFADYIFPGFDQLVSQV 98
>pdb|1ITZ|A Chain A, Maize Transketolase In Complex With Tpp
pdb|1ITZ|B Chain B, Maize Transketolase In Complex With Tpp
pdb|1ITZ|C Chain C, Maize Transketolase In Complex With Tpp
Length = 675
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 55/131 (41%), Gaps = 11/131 (8%)
Query: 501 FQK-RFPDRCFDVGIAEQHAVTFAAGLA--SEGVKPFCAIYSSF--LQRGYDQVVHDVDL 555
FQK +R G+ E G+A S G P+CA + F RG ++ L
Sbjct: 407 FQKDTAEERNVRFGVREHGMGAICNGIALHSPGFVPYCATFFVFTDYMRGAMRISA---L 463
Query: 556 QKLPVRFAM--DRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVI 613
+ V + M D GL G DGPTH + +PN++++ P+D E A +
Sbjct: 464 SEAGVIYVMTHDSIGL-GEDGPTHQPIEHLVSFRAMPNILMLRPADGNETAGAYKVAVLN 522
Query: 614 DDRPSCFRFPR 624
RPS R
Sbjct: 523 RKRPSILALSR 533
>pdb|1NI4|A Chain A, Human Pyruvate Dehydrogenase
pdb|1NI4|C Chain C, Human Pyruvate Dehydrogenase
Length = 365
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%)
Query: 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVL 310
G G + G G+A+A GK+ +++ GDGA GQ +EA N A I +
Sbjct: 138 GNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNXAALWKLPCIFIC 197
Query: 311 NDNK 314
+N+
Sbjct: 198 ENNR 201
>pdb|1IK6|A Chain A, 3d Structure Of The E1beta Subunit Of Pyruvate
Dehydrogenase From The Archeon Pyrobaculum Aerophilum
Length = 369
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 77/166 (46%), Gaps = 19/166 (11%)
Query: 474 SLIKEAETDDKIVAIHAAMG--GGTGL---NYFQKRFPDRCFDVGIAEQHAVTFAAGLAS 528
+L +E E D+++V + +G GG L +++ P+R D + E + FA G+A
Sbjct: 60 ALHEEMERDERVVVLGEDVGKKGGVFLVTEGLYERFGPERVIDTPLNEGGILGFAMGMAM 119
Query: 529 EGVKPFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMD-RAGLV--------GADGPTHC 578
G+KP I + F+ G D++++ + KL R + +A LV G H
Sbjct: 120 AGLKPVAEIQFVDFIWLGADELLNHI--AKLRYRSGGNYKAPLVVRTPVGSGTRGGLYHS 177
Query: 579 GAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPR 624
+ + F+ P +VV+ PS ++ AA+ D P F P+
Sbjct: 178 NSPEAIFVHT-PGLVVVMPSTPYNAKGLL-KAAIRGDDPVVFLEPK 221
>pdb|2OZL|A Chain A, Human Pyruvate Dehydrogenase S264e Variant
pdb|2OZL|C Chain C, Human Pyruvate Dehydrogenase S264e Variant
Length = 365
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%)
Query: 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVL 310
G G + G G+A+A GK+ +++ GDGA GQ +EA N A I +
Sbjct: 138 GNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFIC 197
Query: 311 NDNK 314
+N+
Sbjct: 198 ENNR 201
>pdb|3EXE|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%)
Query: 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVL 310
G G + G G+A+A GK+ +++ GDGA GQ +EA N A I +
Sbjct: 155 GNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFIC 214
Query: 311 NDNK 314
+N+
Sbjct: 215 ENNR 218
>pdb|3EXH|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%)
Query: 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVL 310
G G + G G+A+A GK+ +++ GDGA GQ +EA N A I +
Sbjct: 155 GNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFIC 214
Query: 311 NDNK 314
+N+
Sbjct: 215 ENNR 218
>pdb|3EXI|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex With
The Subunit-Binding Domain (Sbd) Of E2p, But Sbd Cannot
Be Modeled Into The Electron Density
Length = 382
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%)
Query: 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVL 310
G G + G G+A+A GK+ +++ GDGA GQ +EA N A I +
Sbjct: 155 GNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFIC 214
Query: 311 NDNK 314
+N+
Sbjct: 215 ENNR 218
>pdb|3EXF|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|I Chain I, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|K Chain K, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|M Chain M, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|O Chain O, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Q Chain Q, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|S Chain S, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|U Chain U, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|W Chain W, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Y Chain Y, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|1 Chain 1, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|3 Chain 3, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|5 Chain 5, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%)
Query: 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVL 310
G G + G G+A+A GK+ +++ GDGA GQ +EA N A I +
Sbjct: 155 GNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFIC 214
Query: 311 NDNK 314
+N+
Sbjct: 215 ENNR 218
>pdb|1R9J|A Chain A, Transketolase From Leishmania Mexicana
pdb|1R9J|B Chain B, Transketolase From Leishmania Mexicana
Length = 673
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 46/120 (38%), Gaps = 1/120 (0%)
Query: 508 RCFDVGIAEQHAVTFAAGL-ASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDR 566
R G+ E GL A +G+ PF + +F+ V + A
Sbjct: 403 RYIRFGVREHAMCAILNGLDAHDGIIPFGGTFLNFIGYALGAVRLAAISHHRVIYVATHD 462
Query: 567 AGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGN 626
+ VG DGPTH V + +PN+ V+ PSD+ E A A P+ R N
Sbjct: 463 SIGVGEDGPTHQPVELVAALRAMPNLQVIRPSDQTETSGAWAVALSSIHTPTVLCLSRQN 522
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 69/193 (35%), Gaps = 28/193 (14%)
Query: 156 STEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHR---VFNTPD------DKI 206
S E + L ADIV GH +G+ ++ L +N+ D D+
Sbjct: 5 SIEKVANCIRCLAADIVQG--GKSGHPGTPMGMAPMSAVLWTEVMKYNSQDPDWVDRDRF 62
Query: 207 IWDVGHQAYVHKILTGRRSRMNTMRKTSGL-------AGFPKREESVHDAFGAGHSSTSI 259
+ GH + L TM G G P+R + G I
Sbjct: 63 VMSNGHGCALQYALLHMAGYNLTMDDLKGFRQDGSRTPGHPERFVTPGVEVTTGPLGQGI 122
Query: 260 SAGLGMAVARDILGKNNN----------VISVIGDGAMTAGQAYEAMNNAGFLDANLIVV 309
+ +G+A+A L N GDG + G EA++ AG L ++V
Sbjct: 123 ANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGVCQEALSLAGHLALEKLIV 182
Query: 310 LNDNKQVSLPTAT 322
+ D+ +S+ +T
Sbjct: 183 IYDSNYISIDGST 195
>pdb|3KOM|A Chain A, Crystal Structure Of Apo Transketolase From Francisella
Tularensis
pdb|3KOM|B Chain B, Crystal Structure Of Apo Transketolase From Francisella
Tularensis
Length = 663
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 40/99 (40%), Gaps = 4/99 (4%)
Query: 530 GVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRF--AMDRAGLVGADGPTHCGAFDVTFMS 587
G+KP+ + F + + L K PV + D GL G DGPTH V +
Sbjct: 427 GIKPYGGTFLVFSDYSRNAIRXSA-LXKQPVVHVXSHDSIGL-GEDGPTHQPIEHVPSLR 484
Query: 588 CLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGN 626
+PN+ V P+D E A D PS R N
Sbjct: 485 LIPNLSVWRPADTIETXIAWKEAVKSKDTPSVXVLTRQN 523
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 282 IGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSL 318
+GDG + G ++EA + AG L N +V D+ +S+
Sbjct: 155 LGDGXLXEGVSHEACSLAGTLGLNKLVAFWDDNNISI 191
>pdb|1W85|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|C Chain C, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|E Chain E, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|G Chain G, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
Length = 368
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 264 GMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNK 314
G+A+ + GK I+ GDG + G YE +N AG A I V+ +N+
Sbjct: 153 GVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNR 203
>pdb|3DVA|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 369
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 264 GMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNK 314
G+A+ + GK I+ GDG + G YE +N AG A I V+ +N+
Sbjct: 154 GVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNR 204
>pdb|3DUF|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 369
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 264 GMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNK 314
G+A+ + GK I+ GDG + G YE +N AG A I V+ +N+
Sbjct: 154 GVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNR 204
>pdb|1QGD|A Chain A, Transketolase From Escherichia Coli
pdb|1QGD|B Chain B, Transketolase From Escherichia Coli
Length = 662
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 76/185 (41%), Gaps = 27/185 (14%)
Query: 161 EQLAAELRADIVNSVSKT-GGHLSANLGVVELTLALHRVF--NTPD-------DKIIWDV 210
++LA +RA +++V K GH A +G+ ++ L R F + P D+ +
Sbjct: 4 KELANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLKHNPQNPSWADRDRFVLSN 63
Query: 211 GHQA---YVHKILTGRRSRMNTMRKTSGL----AGFPKREESVHDAFGAGHSSTSISAGL 263
GH + Y LTG M ++ L G P+ ++ G I+ +
Sbjct: 64 GHGSMLIYSLLHLTGYDLPMEELKNFRQLHSKTPGHPEVGKTAGVETTTGPLGQGIANAV 123
Query: 264 GMAVARDILGKNNN----------VISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDN 313
GMA+A L N + +GDG M G ++E + AG L ++ D+
Sbjct: 124 GMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDD 183
Query: 314 KQVSL 318
+S+
Sbjct: 184 NGISI 188
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 38/98 (38%), Gaps = 2/98 (2%)
Query: 530 GVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVR-FAMDRAGLVGADGPTHCGAFDVTFMSC 588
G P+ + + F++ + V +++ V + D GL G DGPTH V +
Sbjct: 425 GFLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGL-GEDGPTHQPVEQVASLRV 483
Query: 589 LPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGN 626
PNM P D+ E D P+ R N
Sbjct: 484 TPNMSTWRPCDQVESAVAWKYGVERQDGPTALILSRQN 521
>pdb|2R5N|A Chain A, Crystal Structure Of Transketolase From Escherichia Coli
In Noncovalent Complex With Acceptor Aldose Ribose
5-Phosphate
pdb|2R5N|B Chain B, Crystal Structure Of Transketolase From Escherichia Coli
In Noncovalent Complex With Acceptor Aldose Ribose
5-Phosphate
pdb|2R8O|A Chain A, Transketolase From E. Coli In Complex With Substrate D-
Xylulose-5-Phosphate
pdb|2R8O|B Chain B, Transketolase From E. Coli In Complex With Substrate D-
Xylulose-5-Phosphate
pdb|2R8P|A Chain A, Transketolase From E. Coli In Complex With Substrate D-
Fructose-6-Phosphate
pdb|2R8P|B Chain B, Transketolase From E. Coli In Complex With Substrate D-
Fructose-6-Phosphate
Length = 669
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 78/190 (41%), Gaps = 37/190 (19%)
Query: 161 EQLAAELRADIVNSVSKT-GGHLSANLGVVELTLALHRVF--NTPD-------DKIIWDV 210
++LA +RA +++V K GH A +G+ ++ L R F + P D+ +
Sbjct: 5 KELANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLKHNPQNPSWADRDRFVLSN 64
Query: 211 GHQA---YVHKILTGRRSRMNTMR-------KTSG--LAGFPKREESVHDAFGAGHSSTS 258
GH + Y LTG M ++ KT G G+ E+ G G
Sbjct: 65 GHGSMLIYSLLHLTGYDLPMEELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQG----- 119
Query: 259 ISAGLGMAVARDILGKNNN----------VISVIGDGAMTAGQAYEAMNNAGFLDANLIV 308
I+ +GMA+A L N + +GDG M G ++E + AG L ++
Sbjct: 120 IANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLI 179
Query: 309 VLNDNKQVSL 318
D+ +S+
Sbjct: 180 AFYDDNGISI 189
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 38/98 (38%), Gaps = 2/98 (2%)
Query: 530 GVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVR-FAMDRAGLVGADGPTHCGAFDVTFMSC 588
G P+ + + F++ + V +++ V + D GL G DGPTH V +
Sbjct: 426 GFLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGL-GEDGPTHQPVEQVASLRV 484
Query: 589 LPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGN 626
PNM P D+ E D P+ R N
Sbjct: 485 TPNMSTWRPCDQVESAVAWKYGVERQDGPTALILSRQN 522
>pdb|1W88|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|C Chain C, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|E Chain E, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|G Chain G, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
Length = 368
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 264 GMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNK 314
G+A+ + GK I+ GDG + G Y+ +N AG A I V+ +N+
Sbjct: 153 GVALGLKMRGKKAVAITYTGDGGTSQGNFYQGINFAGAFKAPAIFVVQNNR 203
>pdb|4HPZ|A Chain A, Crystal Structure Of A Tale Protein Reveals An Extended
N-terminal Dna Binding Region
Length = 463
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 481 TDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAA 524
T D++VAI + +GG L Q+ P C D G+ Q V A+
Sbjct: 143 TPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPQQVVAIAS 186
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 481 TDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLASE 529
T D++VAI + GG L Q+ P C D G+ Q V A+ + +
Sbjct: 211 TPDQVVAIASHDGGKQALETVQRLLPVLCQDHGLTPQQVVAIASNIGGK 259
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 481 TDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFA 523
T D++VAI + GG L Q+ P C D G+ AV A
Sbjct: 347 TPDQVVAIASHDGGKQALETVQRLLPVLCQDHGLTPAQAVAIA 389
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 481 TDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAA 524
T D++VAI + GG L Q+ P C D G+ + V A+
Sbjct: 279 TPDQVVAIASNDGGKQALETVQRLLPVLCQDHGLTPEQVVAIAS 322
>pdb|3HYL|A Chain A, Crystal Structure Of Transketolase From Bacillus Anthracis
pdb|3HYL|B Chain B, Crystal Structure Of Transketolase From Bacillus Anthracis
pdb|3M49|A Chain A, Crystal Structure Of Transketolase Complexed With Thiamine
Diphosphate From Bacillus Anthracis
pdb|3M49|B Chain B, Crystal Structure Of Transketolase Complexed With Thiamine
Diphosphate From Bacillus Anthracis
Length = 690
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 555 LQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVI 613
L +LPV + + VG DGPTH + + PN+ V+ P+D E + A
Sbjct: 475 LXQLPVTYVFTHDSIAVGEDGPTHEPIEQLAALRAXPNVSVIRPADGNESVAAWRLALES 534
Query: 614 DDRPSCFRFPR 624
++P+ R
Sbjct: 535 TNKPTALVLTR 545
>pdb|3UGM|A Chain A, Structure Of Tal Effector Pthxo1 Bound To Its Dna Target
Length = 1047
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Query: 481 TDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGL----ASEGVKPFCA 536
T D++VAI + +GG L Q+ P C D G+ V A+ + A E V+
Sbjct: 833 TQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLP 892
Query: 537 IYSSFLQRGYDQVV 550
+ DQVV
Sbjct: 893 VLCQDHGLTLDQVV 906
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 481 TDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAA 524
T D++VAI + +GG L Q+ P C D G+ V A+
Sbjct: 867 TPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVVAIAS 910
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 26/59 (44%)
Query: 481 TDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLASEGVKPFCAIYS 539
T D++VAI + GG L Q+ P C D G+ V A+ + ++ A S
Sbjct: 934 TPDQVVAIASNSGGKQALETVQRLLPVLCQDHGLTPNQVVAIASNGGKQALESIVAQLS 992
>pdb|1TKA|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKA|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKB|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKB|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKC|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKC|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
Length = 678
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 46/125 (36%), Gaps = 4/125 (3%)
Query: 505 FPDRCFDVGIAEQHAVTFAAGLASEGV--KPFCAIYSSFLQRGYDQVVHDVDLQKLPVRF 562
+ R GI E G+++ G KP+ + +F+ V L PV +
Sbjct: 405 YSGRYIRYGIREHAMGAIMNGISAFGANYKPYGGTFLNFVSYAAGAVRLSA-LSGHPVIW 463
Query: 563 AMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFR 621
+ VG DGPTH + LPN+ V P+D E+ + PS
Sbjct: 464 VATHDSIGVGEDGPTHQPIETLAHFRSLPNIQVWRPADGNEVSAAYKNSLESKHTPSIIA 523
Query: 622 FPRGN 626
R N
Sbjct: 524 LSRQN 528
>pdb|1TRK|A Chain A, Refined Structure Of Transketolase From Saccharomyces
Cerevisiae At 2.0 Angstroms Resolution
pdb|1TRK|B Chain B, Refined Structure Of Transketolase From Saccharomyces
Cerevisiae At 2.0 Angstroms Resolution
pdb|1NGS|A Chain A, Complex Of Transketolase With Thiamin Diphosphate, Ca2+
And Acceptor Substrate Erythrose-4-phosphate
pdb|1NGS|B Chain B, Complex Of Transketolase With Thiamin Diphosphate, Ca2+
And Acceptor Substrate Erythrose-4-phosphate
pdb|1GPU|A Chain A, Transketolase Complex With Reaction Intermediate
pdb|1GPU|B Chain B, Transketolase Complex With Reaction Intermediate
Length = 680
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 46/125 (36%), Gaps = 4/125 (3%)
Query: 505 FPDRCFDVGIAEQHAVTFAAGLASEGV--KPFCAIYSSFLQRGYDQVVHDVDLQKLPVRF 562
+ R GI E G+++ G KP+ + +F+ V L PV +
Sbjct: 407 YSGRYIRYGIREHAMGAIMNGISAFGANYKPYGGTFLNFVSYAAGAVRLSA-LSGHPVIW 465
Query: 563 AMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFR 621
+ VG DGPTH + LPN+ V P+D E+ + PS
Sbjct: 466 VATHDSIGVGEDGPTHQPIETLAHFRSLPNIQVWRPADGNEVSAAYKNSLESKHTPSIIA 525
Query: 622 FPRGN 626
R N
Sbjct: 526 LSRQN 530
>pdb|1AY0|A Chain A, Identification Of Catalytically Important Residues In
Yeast Transketolase
pdb|1AY0|B Chain B, Identification Of Catalytically Important Residues In
Yeast Transketolase
Length = 680
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 46/125 (36%), Gaps = 4/125 (3%)
Query: 505 FPDRCFDVGIAEQHAVTFAAGLASEGV--KPFCAIYSSFLQRGYDQVVHDVDLQKLPVRF 562
+ R GI E G+++ G KP+ + +F+ V L PV +
Sbjct: 407 YSGRYIRYGIREHAMGAIMNGISAFGANYKPYGGTFLNFVSYAAGAVRLSA-LSGHPVIW 465
Query: 563 AMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFR 621
+ VG DGPTH + LPN+ V P+D E+ + PS
Sbjct: 466 VATHDSIGVGEDGPTHQPIETLAHFRSLPNIQVWRPADGNEVSAAYKNSLESKHTPSIIA 525
Query: 622 FPRGN 626
R N
Sbjct: 526 LSRQN 530
>pdb|3M7I|A Chain A, Crystal Structure Of Transketolase In Complex With
Thiamine Diphosphate, Ribose-5-Phosphate(Pyranose Form)
And Magnesium Ion
pdb|3M34|A Chain A, Crystal Structure Of Transketolase In Complex With Thiamin
D And Calcium Ion
pdb|3M6L|A Chain A, Crystal Structure Of Transketolase In Complex With
Thiamine Diphosphate, Ribose-5-Phosphate And Calcium Ion
Length = 635
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 79/181 (43%), Gaps = 22/181 (12%)
Query: 160 LEQLAAELRADIVNSVSK-TGGHLSANLGVVEL--TLALHRVFNTPD------DKIIWDV 210
L++ A LR + V K GH A LG+ ++ L+ H N + D++++
Sbjct: 9 LQEQANTLRFLSADXVQKANSGHPGAPLGLADILSVLSYHLKHNPKNPTWLNRDRLVFSG 68
Query: 211 GHQA---YVHKILTGRRSRMNTMRKTSGLA----GFPKREE-SVHDAFGAGHSSTSISAG 262
GH + Y L+G + ++ L G P+ V A G + + G
Sbjct: 69 GHASALLYSFLHLSGYDLSLEDLKNFRQLHSKTPGHPEISTLGVEIATGPLGQGVANAVG 128
Query: 263 LGMAV--ARDILGKN---NNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVS 317
A A+++LG + + + + GDG + G +YEA + AG + +++ D+ +S
Sbjct: 129 FAXAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGISYEACSLAGLHKLDNFILIYDSNNIS 188
Query: 318 L 318
+
Sbjct: 189 I 189
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 562 FAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFR 621
F D G VG DGPTH ++ PN + P+D E + A+ D PS F
Sbjct: 442 FTHDSIG-VGEDGPTHQPIEQLSTFRAXPNFLTFRPADGVENV-KAWQIALNADIPSAFV 499
Query: 622 FPR 624
R
Sbjct: 500 LSR 502
>pdb|3L84|A Chain A, High Resolution Crystal Structure Of Transketolase From
Campylobacter Jejuni Subsp. Jejuni Nctc 11168
Length = 632
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 79/181 (43%), Gaps = 22/181 (12%)
Query: 160 LEQLAAELRADIVNSVSK-TGGHLSANLGVVEL--TLALHRVFNTPD------DKIIWDV 210
L++ A LR + V K GH A LG+ ++ L+ H N + D++++
Sbjct: 6 LQEQANTLRFLSADXVQKANSGHPGAPLGLADILSVLSYHLKHNPKNPTWLNRDRLVFSG 65
Query: 211 GHQA---YVHKILTGRRSRMNTMRKTSGLA----GFPKREE-SVHDAFGAGHSSTSISAG 262
GH + Y L+G + ++ L G P+ V A G + + G
Sbjct: 66 GHASALLYSFLHLSGYDLSLEDLKNFRQLHSKTPGHPEISTLGVEIATGPLGQGVANAVG 125
Query: 263 LGMAV--ARDILGKN---NNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVS 317
A A+++LG + + + + GDG + G +YEA + AG + +++ D+ +S
Sbjct: 126 FAXAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGISYEACSLAGLHKLDNFILIYDSNNIS 185
Query: 318 L 318
+
Sbjct: 186 I 186
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 562 FAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFR 621
F D G VG DGPTH ++ PN + P+D E + A+ D PS F
Sbjct: 439 FTHDSIG-VGEDGPTHQPIEQLSTFRAXPNFLTFRPADGVENV-KAWQIALNADIPSAFV 496
Query: 622 FPR 624
R
Sbjct: 497 LSR 499
>pdb|2ZTG|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
Synthetase Lacking The C-Terminal Dimerization Domain In
Complex With Ala-Sa
Length = 739
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Query: 167 LRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILT 221
+R D ++SV +TG HL+ H FN P +I W AY ++L
Sbjct: 127 IRLDDLDSVGRTGRHLTL------FEXXAHHAFNYPGKEIYWKNETVAYCTELLN 175
>pdb|1IRU|N Chain N, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|2 Chain 2, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 219
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 10/79 (12%)
Query: 203 DDKIIWDVGH-------QAYVHKILTGRRSRMNTMRKTSGLAGFPKREESVH--DAFGAG 253
D++++ D GH +++ + + RRS+MN + T + G+ E + D G
Sbjct: 73 DEELLGD-GHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVA 131
Query: 254 HSSTSISAGLGMAVARDIL 272
+ + S++ G G +A+ +L
Sbjct: 132 YEAPSLATGYGAYLAQPLL 150
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,289,541
Number of Sequences: 62578
Number of extensions: 798095
Number of successful extensions: 1799
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1729
Number of HSP's gapped (non-prelim): 63
length of query: 654
length of database: 14,973,337
effective HSP length: 105
effective length of query: 549
effective length of database: 8,402,647
effective search space: 4613053203
effective search space used: 4613053203
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)