Query 006251
Match_columns 654
No_of_seqs 376 out of 2298
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 20:33:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006251.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006251hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1154 Dxs Deoxyxylulose-5-ph 100.0 3E-122 5E-127 1009.4 49.5 497 140-651 2-500 (627)
2 PLN02225 1-deoxy-D-xylulose-5- 100.0 5E-117 1E-121 1003.0 51.4 498 132-651 68-566 (701)
3 PLN02234 1-deoxy-D-xylulose-5- 100.0 4E-115 1E-119 986.0 50.0 488 132-651 56-543 (641)
4 PLN02582 1-deoxy-D-xylulose-5- 100.0 8E-113 2E-117 975.0 55.7 520 132-651 23-542 (677)
5 TIGR00204 dxs 1-deoxy-D-xylulo 100.0 2E-103 5E-108 897.8 53.9 494 143-651 1-494 (617)
6 PRK12571 1-deoxy-D-xylulose-5- 100.0 3E-103 7E-108 899.4 53.9 501 137-651 3-503 (641)
7 PRK12315 1-deoxy-D-xylulose-5- 100.0 2.3E-95 5E-100 827.4 48.4 458 142-651 2-459 (581)
8 PRK05444 1-deoxy-D-xylulose-5- 100.0 1.4E-92 3E-97 806.4 48.8 460 137-651 1-462 (580)
9 PRK12753 transketolase; Review 100.0 2.7E-80 5.8E-85 711.9 45.4 432 161-651 5-545 (663)
10 PTZ00089 transketolase; Provis 100.0 3.7E-80 7.9E-85 711.6 46.4 431 159-651 5-544 (661)
11 KOG0523 Transketolase [Carbohy 100.0 1.8E-81 3.9E-86 683.8 31.1 482 140-653 2-505 (632)
12 PLN02790 transketolase 100.0 3.8E-78 8.2E-83 694.2 45.9 423 167-651 1-534 (654)
13 PRK12754 transketolase; Review 100.0 4.8E-77 1E-81 681.8 45.8 432 161-651 5-545 (663)
14 PRK05899 transketolase; Review 100.0 4.2E-77 9.1E-82 684.7 45.1 435 155-651 3-509 (624)
15 TIGR00232 tktlase_bact transke 100.0 6.1E-75 1.3E-79 667.5 46.0 426 162-649 2-535 (653)
16 COG0021 TktA Transketolase [Ca 100.0 8.9E-71 1.9E-75 606.5 40.9 434 157-651 3-543 (663)
17 PF13292 DXP_synthase_N: 1-deo 100.0 3.6E-71 7.7E-76 560.4 14.3 270 143-428 1-270 (270)
18 TIGR03186 AKGDH_not_PDH alpha- 100.0 1.1E-66 2.4E-71 602.8 45.5 460 131-650 46-718 (889)
19 PRK13012 2-oxoacid dehydrogena 100.0 1.5E-65 3.3E-70 595.7 46.3 455 138-649 66-726 (896)
20 PRK09405 aceE pyruvate dehydro 100.0 5.5E-65 1.2E-69 588.8 46.3 455 138-651 58-720 (891)
21 TIGR00759 aceE pyruvate dehydr 100.0 2.5E-49 5.4E-54 453.6 41.0 433 138-626 52-689 (885)
22 COG3959 Transketolase, N-termi 100.0 2E-46 4.3E-51 368.6 23.6 222 155-431 5-243 (243)
23 PRK05261 putative phosphoketol 100.0 6.6E-42 1.4E-46 392.9 37.9 386 178-628 48-584 (785)
24 cd02007 TPP_DXS Thiamine pyrop 100.0 7.1E-43 1.5E-47 347.1 22.0 195 179-434 1-195 (195)
25 PF00456 Transketolase_N: Tran 100.0 1.8E-43 3.9E-48 376.2 16.6 232 161-448 2-261 (332)
26 COG3958 Transketolase, C-termi 100.0 2.8E-42 6E-47 351.2 19.2 184 464-651 6-191 (312)
27 cd02017 TPP_E1_EcPDC_like Thia 100.0 7.4E-41 1.6E-45 357.9 25.5 230 161-446 5-334 (386)
28 cd02012 TPP_TK Thiamine pyroph 100.0 6.2E-39 1.3E-43 331.2 24.4 228 165-448 1-245 (255)
29 cd07033 TPP_PYR_DXS_TK_like Py 100.0 5.2E-37 1.1E-41 294.7 18.8 154 470-624 2-156 (156)
30 PRK09404 sucA 2-oxoglutarate d 100.0 9E-35 2E-39 340.8 36.2 416 154-627 185-775 (924)
31 PRK09212 pyruvate dehydrogenas 100.0 7.5E-36 1.6E-40 318.5 20.7 183 464-651 3-200 (327)
32 CHL00144 odpB pyruvate dehydro 100.0 9.1E-36 2E-40 317.7 20.1 182 464-651 3-200 (327)
33 PLN02683 pyruvate dehydrogenas 100.0 2.6E-35 5.6E-40 317.3 21.1 184 464-651 26-227 (356)
34 COG2609 AceE Pyruvate dehydrog 100.0 5.6E-33 1.2E-37 306.3 37.3 480 138-627 55-696 (887)
35 PTZ00182 3-methyl-2-oxobutanat 100.0 4.8E-35 1E-39 315.1 20.0 187 461-651 31-232 (355)
36 PRK11892 pyruvate dehydrogenas 100.0 1.6E-34 3.4E-39 319.8 21.3 186 462-651 139-339 (464)
37 TIGR00239 2oxo_dh_E1 2-oxoglut 100.0 3.6E-33 7.7E-38 326.1 29.3 336 251-645 313-800 (929)
38 cd07036 TPP_PYR_E1-PDHc-beta_l 100.0 2.3E-34 5E-39 279.4 16.1 153 469-624 1-167 (167)
39 COG0022 AcoB Pyruvate/2-oxoglu 100.0 1.5E-33 3.2E-38 289.4 17.3 182 465-651 2-199 (324)
40 PF02779 Transket_pyr: Transke 100.0 5.5E-34 1.2E-38 279.2 12.4 164 464-628 2-176 (178)
41 smart00861 Transket_pyr Transk 100.0 2.1E-30 4.6E-35 251.0 17.8 159 466-625 1-167 (168)
42 KOG0524 Pyruvate dehydrogenase 99.9 9.6E-27 2.1E-31 233.8 12.2 186 463-651 33-235 (359)
43 COG1071 AcoA Pyruvate/2-oxoglu 99.9 6.7E-25 1.5E-29 233.4 22.5 228 154-438 23-270 (358)
44 CHL00149 odpA pyruvate dehydro 99.9 9.2E-24 2E-28 226.7 24.0 229 149-437 11-267 (341)
45 PLN02269 Pyruvate dehydrogenas 99.9 1.8E-23 4E-28 225.5 23.8 225 153-438 25-268 (362)
46 KOG0525 Branched chain alpha-k 99.9 7.1E-25 1.5E-29 217.4 7.0 185 463-652 39-239 (362)
47 cd02000 TPP_E1_PDC_ADC_BCADC T 99.9 1.2E-22 2.6E-27 214.1 23.3 202 177-436 23-235 (293)
48 PLN02374 pyruvate dehydrogenas 99.9 1.2E-22 2.5E-27 223.4 23.2 224 154-437 82-333 (433)
49 PF00676 E1_dh: Dehydrogenase 99.9 2.4E-22 5.3E-27 212.4 18.2 204 177-438 21-234 (300)
50 TIGR03182 PDH_E1_alph_y pyruva 99.9 7.9E-22 1.7E-26 209.9 22.3 202 178-437 30-242 (315)
51 COG3957 Phosphoketolase [Carbo 99.9 7.3E-22 1.6E-26 219.9 22.5 386 179-627 60-594 (793)
52 TIGR03181 PDH_E1_alph_x pyruva 99.9 4.3E-21 9.2E-26 206.4 24.8 225 152-438 18-255 (341)
53 KOG0225 Pyruvate dehydrogenase 99.8 2E-20 4.4E-25 193.3 14.5 200 178-438 87-296 (394)
54 cd02011 TPP_PK Thiamine pyroph 99.8 4.1E-19 9E-24 179.4 16.6 168 210-436 2-210 (227)
55 cd02016 TPP_E1_OGDC_like Thiam 99.7 2.3E-17 4.9E-22 170.6 16.6 204 178-437 11-254 (265)
56 cd00568 TPP_enzymes Thiamine p 99.6 1.1E-14 2.3E-19 139.9 14.4 125 250-428 43-168 (168)
57 KOG1182 Branched chain alpha-k 99.5 4.7E-15 1E-19 152.5 5.0 130 252-436 192-325 (432)
58 cd03371 TPP_PpyrDC Thiamine py 99.5 4.6E-13 1E-17 132.8 17.1 122 250-433 45-167 (188)
59 PF09364 XFP_N: XFP N-terminal 99.5 2.1E-13 4.6E-18 144.4 15.4 211 179-449 47-306 (379)
60 cd02008 TPP_IOR_alpha Thiamine 99.5 5.1E-13 1.1E-17 131.0 12.3 126 251-428 49-176 (178)
61 cd02004 TPP_BZL_OCoD_HPCL Thia 99.5 5.4E-13 1.2E-17 129.8 12.2 125 251-428 46-171 (172)
62 PRK06163 hypothetical protein; 99.4 3.6E-12 7.7E-17 127.9 17.8 123 251-435 55-179 (202)
63 TIGR03297 Ppyr-DeCO2ase phosph 99.4 1.5E-11 3.3E-16 133.3 21.2 167 186-433 172-340 (361)
64 cd02013 TPP_Xsc_like Thiamine 99.4 3.2E-12 6.9E-17 127.4 13.9 131 251-433 51-183 (196)
65 cd02001 TPP_ComE_PpyrDC Thiami 99.4 1.9E-12 4.1E-17 124.8 11.4 116 251-431 40-157 (157)
66 cd02015 TPP_AHAS Thiamine pyro 99.4 2.8E-12 6.2E-17 126.5 12.4 128 251-432 48-177 (186)
67 cd03372 TPP_ComE Thiamine pyro 99.4 3E-12 6.5E-17 126.0 12.4 118 251-433 40-159 (179)
68 cd02002 TPP_BFDC Thiamine pyro 99.4 6.1E-12 1.3E-16 122.8 13.5 129 250-428 47-178 (178)
69 cd02003 TPP_IolD Thiamine pyro 99.4 7E-12 1.5E-16 125.8 14.3 140 251-433 46-188 (205)
70 cd02006 TPP_Gcl Thiamine pyrop 99.4 9.2E-12 2E-16 124.6 14.2 141 251-432 55-197 (202)
71 PF02775 TPP_enzyme_C: Thiamin 99.3 4.4E-12 9.5E-17 121.0 10.1 129 250-426 25-153 (153)
72 cd06586 TPP_enzyme_PYR Pyrimid 99.3 1.9E-11 4E-16 115.8 13.5 149 475-624 3-154 (154)
73 cd02010 TPP_ALS Thiamine pyrop 99.3 1.1E-11 2.3E-16 121.8 12.1 127 250-430 45-171 (177)
74 TIGR03846 sulfopy_beta sulfopy 99.3 1.1E-11 2.3E-16 122.4 12.2 117 252-432 41-159 (181)
75 cd02014 TPP_POX Thiamine pyrop 99.3 1.6E-11 3.4E-16 120.4 11.9 126 251-430 49-174 (178)
76 cd02009 TPP_SHCHC_synthase Thi 99.3 1.3E-11 2.8E-16 120.8 10.6 125 251-428 49-174 (175)
77 PRK11864 2-ketoisovalerate fer 99.3 6.4E-11 1.4E-15 124.9 15.2 147 251-436 67-216 (300)
78 PRK12270 kgd alpha-ketoglutara 99.3 3E-10 6.4E-15 132.0 21.5 313 259-627 625-1078(1228)
79 cd03375 TPP_OGFOR Thiamine pyr 99.2 6.3E-11 1.4E-15 118.0 12.8 132 253-429 51-184 (193)
80 cd03376 TPP_PFOR_porB_like Thi 99.2 5E-11 1.1E-15 122.3 12.0 139 252-429 61-200 (235)
81 cd02005 TPP_PDC_IPDC Thiamine 99.2 6.7E-11 1.4E-15 116.8 11.9 123 251-430 48-175 (183)
82 PRK06546 pyruvate dehydrogenas 99.2 1.1E-10 2.4E-15 134.3 13.4 128 251-432 406-533 (578)
83 PRK08266 hypothetical protein; 99.2 2.6E-10 5.6E-15 130.1 14.1 129 251-432 400-528 (542)
84 PRK09124 pyruvate dehydrogenas 99.2 1.4E-10 3.1E-15 133.1 12.1 128 251-432 406-533 (574)
85 COG0028 IlvB Thiamine pyrophos 99.2 1.5E-10 3.2E-15 132.2 11.7 128 251-431 406-533 (550)
86 PRK07524 hypothetical protein; 99.2 2.1E-10 4.6E-15 130.7 12.9 129 251-433 405-533 (535)
87 PRK06112 acetolactate synthase 99.1 2.2E-10 4.8E-15 131.7 12.9 127 251-431 435-562 (578)
88 PRK08199 thiamine pyrophosphat 99.1 2.5E-10 5.5E-15 130.7 13.0 127 251-431 413-540 (557)
89 TIGR02418 acolac_catab acetola 99.1 2.9E-10 6.3E-15 129.6 12.9 128 251-432 406-533 (539)
90 PRK06457 pyruvate dehydrogenas 99.1 2.4E-10 5.2E-15 130.7 12.0 126 251-430 394-520 (549)
91 PRK08611 pyruvate oxidase; Pro 99.1 3.3E-10 7.2E-15 130.3 12.7 128 251-432 406-533 (576)
92 PRK07064 hypothetical protein; 99.1 2.9E-10 6.4E-15 129.6 11.7 126 253-431 405-530 (544)
93 PRK06154 hypothetical protein; 99.1 2.8E-10 6.2E-15 130.6 11.5 128 251-432 429-558 (565)
94 PRK12474 hypothetical protein; 99.1 4.9E-10 1.1E-14 127.3 12.7 128 253-428 389-518 (518)
95 PRK05858 hypothetical protein; 99.1 6.8E-10 1.5E-14 126.8 13.9 128 251-432 405-533 (542)
96 PRK06965 acetolactate synthase 99.1 5.8E-10 1.3E-14 128.6 13.3 129 251-432 435-565 (587)
97 PRK09107 acetolactate synthase 99.1 7.6E-10 1.6E-14 127.8 14.0 129 251-431 428-556 (595)
98 PRK08322 acetolactate synthase 99.1 6.7E-10 1.5E-14 126.8 13.4 129 251-433 404-532 (547)
99 TIGR01504 glyox_carbo_lig glyo 99.1 6.5E-10 1.4E-14 128.2 13.3 140 251-431 416-557 (588)
100 PRK06725 acetolactate synthase 99.1 3.4E-10 7.5E-15 130.0 11.0 127 251-431 420-547 (570)
101 PRK08978 acetolactate synthase 99.1 7.5E-10 1.6E-14 126.5 13.3 128 251-432 399-528 (548)
102 PRK08273 thiamine pyrophosphat 99.1 6.5E-10 1.4E-14 128.4 12.7 131 251-432 413-549 (597)
103 PRK07418 acetolactate synthase 99.1 6.6E-10 1.4E-14 128.8 12.5 128 251-432 432-562 (616)
104 PLN02470 acetolactate synthase 99.1 1E-09 2.2E-14 126.6 13.5 137 251-432 424-560 (585)
105 PRK06882 acetolactate synthase 99.1 4.4E-10 9.6E-15 129.1 10.5 131 251-432 419-549 (574)
106 PRK07586 hypothetical protein; 99.1 9E-10 2E-14 124.9 12.8 128 253-428 385-514 (514)
107 PRK08617 acetolactate synthase 99.1 6.5E-10 1.4E-14 127.2 11.7 128 251-432 412-539 (552)
108 PRK06456 acetolactate synthase 99.1 1.2E-09 2.6E-14 125.5 13.8 127 251-431 419-547 (572)
109 CHL00099 ilvB acetohydroxyacid 99.1 5.8E-10 1.2E-14 128.6 11.2 129 251-430 428-556 (585)
110 PRK08979 acetolactate synthase 99.1 1.5E-09 3.2E-14 124.9 14.4 129 251-430 419-547 (572)
111 TIGR02720 pyruv_oxi_spxB pyruv 99.1 8.5E-10 1.8E-14 126.9 12.4 129 251-431 406-534 (575)
112 PRK06048 acetolactate synthase 99.0 1.2E-09 2.6E-14 125.3 13.3 127 251-431 412-540 (561)
113 TIGR03457 sulphoacet_xsc sulfo 99.0 1.1E-09 2.4E-14 126.1 12.9 131 251-433 428-561 (579)
114 PRK08527 acetolactate synthase 99.0 1.4E-09 3E-14 124.9 13.6 129 251-432 412-541 (563)
115 PRK11866 2-oxoacid ferredoxin 99.0 9.9E-10 2.2E-14 115.2 11.3 133 252-429 58-192 (279)
116 PRK11869 2-oxoacid ferredoxin 99.0 5.4E-10 1.2E-14 117.2 9.3 133 253-429 60-193 (280)
117 PRK07979 acetolactate synthase 99.0 5.8E-10 1.3E-14 128.2 10.4 129 251-430 419-549 (574)
118 PRK07710 acetolactate synthase 99.0 6.2E-10 1.4E-14 127.9 10.6 128 251-432 422-551 (571)
119 cd02018 TPP_PFOR Thiamine pyro 99.0 1.2E-09 2.6E-14 112.2 11.3 140 251-429 62-203 (237)
120 PRK07092 benzoylformate decarb 99.0 1.4E-09 2.9E-14 124.0 12.7 123 252-428 406-529 (530)
121 PRK06466 acetolactate synthase 99.0 7.4E-10 1.6E-14 127.4 10.7 129 251-432 421-551 (574)
122 PRK11269 glyoxylate carboligas 99.0 1.6E-09 3.5E-14 125.0 13.3 140 251-431 417-558 (591)
123 TIGR03393 indolpyr_decarb indo 99.0 8.2E-10 1.8E-14 126.0 10.7 122 251-430 402-528 (539)
124 PRK08155 acetolactate synthase 99.0 1.6E-09 3.6E-14 124.2 13.0 127 251-431 417-545 (564)
125 PRK11865 pyruvate ferredoxin o 99.0 2.2E-09 4.8E-14 113.4 12.7 154 250-437 66-221 (299)
126 PRK09259 putative oxalyl-CoA d 99.0 1.7E-09 3.6E-14 124.3 12.7 128 251-433 422-550 (569)
127 TIGR00118 acolac_lg acetolacta 99.0 1.2E-09 2.7E-14 125.0 11.4 128 251-432 410-539 (558)
128 PRK05778 2-oxoglutarate ferred 99.0 1.2E-09 2.7E-14 115.7 10.1 133 253-429 70-203 (301)
129 PLN02573 pyruvate decarboxylas 99.0 1.3E-09 2.8E-14 125.6 10.9 121 251-429 426-552 (578)
130 PRK07789 acetolactate synthase 99.0 1.8E-09 4E-14 125.0 12.1 133 251-430 445-577 (612)
131 TIGR03254 oxalate_oxc oxalyl-C 99.0 2.3E-09 5E-14 122.8 12.5 126 251-432 415-541 (554)
132 PRK07525 sulfoacetaldehyde ace 99.0 1.5E-09 3.3E-14 125.1 10.6 131 251-433 433-566 (588)
133 PRK06276 acetolactate synthase 99.0 3E-09 6.4E-14 122.7 12.7 126 251-430 417-544 (586)
134 PRK08327 acetolactate synthase 99.0 2.6E-09 5.7E-14 122.8 11.9 136 251-429 428-567 (569)
135 PRK07282 acetolactate synthase 99.0 2.3E-09 5.1E-14 123.1 11.4 126 251-430 416-542 (566)
136 TIGR03394 indol_phenyl_DC indo 99.0 2.1E-09 4.6E-14 122.6 10.8 122 251-431 401-523 (535)
137 PRK07449 2-succinyl-5-enolpyru 98.9 3E-09 6.6E-14 122.1 11.0 126 251-429 423-549 (568)
138 PRK11867 2-oxoglutarate ferred 98.9 7.9E-09 1.7E-13 109.0 12.3 132 253-429 69-202 (286)
139 PRK09628 oorB 2-oxoglutarate-a 98.9 6.4E-09 1.4E-13 109.2 11.1 133 254-430 69-202 (277)
140 PF03894 XFP: D-xylulose 5-pho 98.9 7.6E-09 1.6E-13 100.3 9.7 140 469-612 2-178 (179)
141 TIGR02177 PorB_KorB 2-oxoacid: 98.8 1.2E-08 2.7E-13 107.4 10.7 133 253-429 53-186 (287)
142 TIGR03336 IOR_alpha indolepyru 98.8 1.7E-08 3.6E-13 116.7 11.2 126 252-428 402-529 (595)
143 PLN02980 2-oxoglutarate decarb 98.6 1.4E-07 3.1E-12 120.1 11.3 130 251-431 757-891 (1655)
144 COG3961 Pyruvate decarboxylase 98.5 2E-07 4.3E-12 103.1 9.1 125 252-430 410-536 (557)
145 COG3962 Acetolactate synthase 98.5 5.7E-07 1.2E-11 97.9 10.5 140 245-430 436-576 (617)
146 KOG4166 Thiamine pyrophosphate 98.2 1.3E-05 2.7E-10 86.8 12.9 133 251-436 522-654 (675)
147 KOG1185 Thiamine pyrophosphate 98.1 0.00012 2.6E-09 80.8 18.5 206 157-432 355-563 (571)
148 KOG0451 Predicted 2-oxoglutara 98.0 0.00014 3E-09 80.9 16.4 156 467-626 566-764 (913)
149 KOG1184 Thiamine pyrophosphate 98.0 2.8E-05 6.1E-10 86.2 9.3 59 252-316 414-473 (561)
150 COG1013 PorB Pyruvate:ferredox 97.9 0.0001 2.2E-09 78.3 12.2 131 256-429 73-204 (294)
151 COG0567 SucA 2-oxoglutarate de 97.9 0.00027 5.9E-09 83.4 15.8 118 508-627 628-757 (906)
152 COG4231 Indolepyruvate ferredo 97.8 5.9E-05 1.3E-09 85.7 8.8 125 254-428 429-553 (640)
153 cd03377 TPP_PFOR_PNO Thiamine 97.5 0.00063 1.4E-08 73.9 11.1 115 276-429 152-267 (365)
154 TIGR03297 Ppyr-DeCO2ase phosph 97.3 0.16 3.4E-06 55.9 27.0 209 386-624 110-335 (361)
155 KOG0523 Transketolase [Carbohy 97.3 0.00034 7.4E-09 79.0 6.1 60 386-449 200-259 (632)
156 KOG0450 2-oxoglutarate dehydro 97.1 0.012 2.5E-07 67.7 15.4 149 477-627 661-859 (1017)
157 COG1165 MenD 2-succinyl-6-hydr 97.0 0.024 5.1E-07 64.3 16.5 118 259-432 428-549 (566)
158 COG3960 Glyoxylate carboligase 96.8 0.00089 1.9E-08 70.9 3.1 137 252-430 418-557 (592)
159 PRK13030 2-oxoacid ferredoxin 96.6 0.0066 1.4E-07 74.9 9.4 59 252-316 467-526 (1159)
160 PRK07119 2-ketoisovalerate fer 96.6 0.018 3.9E-07 62.9 11.6 118 504-625 46-172 (352)
161 cd07034 TPP_PYR_PFOR_IOR-alpha 96.5 0.066 1.4E-06 51.2 13.8 114 506-623 41-159 (160)
162 PRK09193 indolepyruvate ferred 96.5 0.01 2.2E-07 73.3 9.8 61 251-316 479-539 (1165)
163 PF01855 POR_N: Pyruvate flavo 96.2 0.0099 2.1E-07 61.2 6.5 114 510-626 39-156 (230)
164 cd07035 TPP_PYR_POX_like Pyrim 96.1 0.051 1.1E-06 51.7 10.6 115 507-624 35-155 (155)
165 TIGR02176 pyruv_ox_red pyruvat 96.0 0.018 3.9E-07 71.8 9.1 115 276-429 952-1067(1165)
166 PRK08659 2-oxoglutarate ferred 96.0 0.05 1.1E-06 60.0 11.5 116 507-625 49-172 (376)
167 PRK13029 2-oxoacid ferredoxin 96.0 0.026 5.7E-07 69.7 10.0 59 252-315 494-552 (1186)
168 PRK09627 oorA 2-oxoglutarate-a 95.4 0.11 2.5E-06 57.2 11.1 108 515-625 55-171 (375)
169 PRK08366 vorA 2-ketoisovalerat 95.2 0.11 2.4E-06 57.6 10.3 107 514-624 56-166 (390)
170 TIGR03710 OAFO_sf 2-oxoacid:ac 94.9 0.12 2.7E-06 59.9 10.1 115 509-625 239-361 (562)
171 PRK09622 porA pyruvate flavodo 94.5 0.26 5.5E-06 55.0 11.1 114 508-625 58-176 (407)
172 PF02776 TPP_enzyme_N: Thiamin 94.5 0.36 7.8E-06 47.0 10.7 125 499-626 32-163 (172)
173 TIGR03845 sulfopyru_alph sulfo 93.4 1.1 2.4E-05 43.4 11.8 110 513-625 40-155 (157)
174 TIGR03336 IOR_alpha indolepyru 93.1 0.35 7.5E-06 56.6 9.2 113 508-625 47-164 (595)
175 PRK08367 porA pyruvate ferredo 93.1 0.59 1.3E-05 52.0 10.6 109 514-625 57-170 (394)
176 cd07037 TPP_PYR_MenD Pyrimidin 92.9 0.78 1.7E-05 44.7 9.9 115 507-623 36-161 (162)
177 cd02004 TPP_BZL_OCoD_HPCL Thia 92.6 1.1 2.4E-05 43.4 10.7 116 504-622 36-169 (172)
178 cd02001 TPP_ComE_PpyrDC Thiami 92.1 3.6 7.9E-05 39.6 13.4 144 470-623 3-153 (157)
179 cd02014 TPP_POX Thiamine pyrop 91.9 3.2 7E-05 40.6 12.9 147 471-623 7-171 (178)
180 cd02018 TPP_PFOR Thiamine pyro 91.3 5.3 0.00012 41.3 14.3 117 505-623 51-201 (237)
181 PRK11866 2-oxoacid ferredoxin 91.3 3.9 8.4E-05 43.5 13.5 150 467-624 18-191 (279)
182 cd07039 TPP_PYR_POX Pyrimidine 91.2 7.7 0.00017 37.7 14.6 115 508-625 40-159 (164)
183 TIGR02177 PorB_KorB 2-oxoacid: 90.7 4.2 9.2E-05 43.4 13.2 146 468-624 13-185 (287)
184 cd02015 TPP_AHAS Thiamine pyro 90.5 2.7 5.7E-05 41.4 10.9 117 504-623 38-172 (186)
185 PRK11864 2-ketoisovalerate fer 90.5 3.5 7.6E-05 44.3 12.4 92 532-625 93-207 (300)
186 cd03376 TPP_PFOR_porB_like Thi 90.5 6.9 0.00015 40.4 14.3 90 531-623 80-198 (235)
187 PRK11865 pyruvate ferredoxin o 90.0 7.3 0.00016 41.9 14.3 105 518-624 73-210 (299)
188 cd01460 vWA_midasin VWA_Midasi 89.7 4.7 0.0001 42.6 12.5 38 277-314 166-205 (266)
189 cd02010 TPP_ALS Thiamine pyrop 89.4 6 0.00013 38.8 12.3 117 504-623 36-168 (177)
190 PRK07979 acetolactate synthase 89.3 6.6 0.00014 45.6 14.6 114 508-626 44-165 (574)
191 cd02009 TPP_SHCHC_synthase Thi 88.9 5.7 0.00012 38.8 11.8 114 505-622 40-172 (175)
192 COG4231 Indolepyruvate ferredo 88.9 3.4 7.3E-05 48.1 11.4 112 507-626 58-177 (640)
193 PRK11867 2-oxoglutarate ferred 88.3 8.9 0.00019 40.9 13.5 147 467-624 28-201 (286)
194 cd03372 TPP_ComE Thiamine pyro 87.8 9.1 0.0002 37.7 12.4 142 469-623 2-153 (179)
195 TIGR00118 acolac_lg acetolacta 87.3 9.5 0.00021 44.1 14.1 117 507-626 40-162 (558)
196 PRK07064 hypothetical protein; 87.1 12 0.00027 43.0 14.9 116 508-626 43-167 (544)
197 TIGR02418 acolac_catab acetola 86.9 9.8 0.00021 43.8 13.9 117 507-626 37-159 (539)
198 PRK06965 acetolactate synthase 86.8 11 0.00023 44.2 14.2 115 507-626 60-182 (587)
199 PRK05778 2-oxoglutarate ferred 86.1 13 0.00028 40.0 13.2 102 519-622 75-200 (301)
200 cd06586 TPP_enzyme_PYR Pyrimid 85.8 4.7 0.0001 37.7 8.8 49 258-314 47-96 (154)
201 PRK06466 acetolactate synthase 85.3 13 0.00029 43.2 14.0 117 507-626 43-165 (574)
202 PRK07525 sulfoacetaldehyde ace 85.2 7.1 0.00015 45.6 11.7 117 507-626 44-165 (588)
203 TIGR03846 sulfopy_beta sulfopy 85.1 15 0.00032 36.3 12.4 144 469-623 2-154 (181)
204 cd02013 TPP_Xsc_like Thiamine 85.1 3.7 8E-05 40.9 8.2 147 471-623 9-177 (196)
205 PRK07524 hypothetical protein; 85.0 20 0.00043 41.3 15.1 117 507-626 40-165 (535)
206 cd02006 TPP_Gcl Thiamine pyrop 85.0 3.5 7.6E-05 41.2 8.0 148 471-623 13-192 (202)
207 PRK08199 thiamine pyrophosphat 84.8 16 0.00036 42.2 14.4 115 507-626 47-169 (557)
208 PRK07092 benzoylformate decarb 84.5 17 0.00037 41.8 14.3 117 507-626 49-172 (530)
209 PRK06882 acetolactate synthase 84.4 7.5 0.00016 45.1 11.4 148 471-623 377-544 (574)
210 PRK11869 2-oxoacid ferredoxin 84.3 15 0.00033 39.1 12.7 150 467-624 19-192 (280)
211 PRK07282 acetolactate synthase 84.2 17 0.00037 42.2 14.3 150 472-626 13-171 (566)
212 cd02002 TPP_BFDC Thiamine pyro 83.9 16 0.00035 35.4 11.9 114 504-622 38-176 (178)
213 PRK08322 acetolactate synthase 83.8 18 0.00039 41.6 14.2 115 507-626 39-161 (547)
214 PRK07586 hypothetical protein; 83.8 25 0.00054 40.2 15.2 117 507-626 40-162 (514)
215 PRK08155 acetolactate synthase 83.7 14 0.00029 43.0 13.1 117 507-626 52-174 (564)
216 PRK09628 oorB 2-oxoglutarate-a 83.5 26 0.00056 37.3 14.0 146 470-625 30-201 (277)
217 cd02003 TPP_IolD Thiamine pyro 83.4 19 0.00042 36.1 12.5 143 472-622 5-181 (205)
218 PRK05858 hypothetical protein; 83.4 19 0.00041 41.6 14.1 118 506-626 42-165 (542)
219 PRK08527 acetolactate synthase 83.1 20 0.00044 41.6 14.2 116 507-625 42-163 (563)
220 PRK07710 acetolactate synthase 83.1 18 0.00039 42.1 13.8 146 472-625 19-175 (571)
221 PRK09107 acetolactate synthase 82.9 20 0.00043 42.0 14.2 149 471-626 13-172 (595)
222 PRK07789 acetolactate synthase 82.4 23 0.0005 41.6 14.5 117 507-626 70-192 (612)
223 cd00568 TPP_enzymes Thiamine p 82.1 7.9 0.00017 36.7 8.8 101 519-622 51-166 (168)
224 PRK07449 2-succinyl-5-enolpyru 81.9 16 0.00035 42.3 12.8 152 470-625 10-174 (568)
225 PRK06112 acetolactate synthase 81.8 9.7 0.00021 44.3 11.0 117 507-626 50-172 (578)
226 PRK06163 hypothetical protein; 81.6 63 0.0014 32.6 15.9 146 471-623 18-171 (202)
227 PRK06276 acetolactate synthase 81.6 11 0.00025 43.9 11.5 116 508-626 40-161 (586)
228 PRK08978 acetolactate synthase 81.4 23 0.0005 40.8 13.8 117 507-626 39-161 (548)
229 cd02008 TPP_IOR_alpha Thiamine 80.6 14 0.0003 36.2 10.0 100 521-623 58-175 (178)
230 PRK06456 acetolactate synthase 80.5 13 0.00027 43.3 11.3 114 508-626 45-166 (572)
231 PRK08611 pyruvate oxidase; Pro 80.1 30 0.00066 40.3 14.3 116 507-626 44-165 (576)
232 cd02012 TPP_TK Thiamine pyroph 79.5 16 0.00035 38.0 10.6 104 520-626 111-228 (255)
233 PRK08266 hypothetical protein; 79.5 31 0.00067 39.7 14.0 116 507-625 44-168 (542)
234 PRK08617 acetolactate synthase 79.3 28 0.0006 40.3 13.6 117 507-626 43-165 (552)
235 PRK06457 pyruvate dehydrogenas 79.1 29 0.00063 40.1 13.7 117 507-626 40-161 (549)
236 PRK08979 acetolactate synthase 78.6 33 0.00072 39.9 14.0 117 507-626 43-165 (572)
237 COG0674 PorA Pyruvate:ferredox 78.6 15 0.00032 40.6 10.5 115 507-625 48-166 (365)
238 PLN02470 acetolactate synthase 78.4 34 0.00074 39.9 14.1 114 507-625 52-173 (585)
239 PRK11269 glyoxylate carboligas 78.2 33 0.00071 40.1 13.8 117 507-626 43-166 (591)
240 cd02007 TPP_DXS Thiamine pyrop 77.8 23 0.00049 35.5 10.8 98 520-624 81-189 (195)
241 cd03371 TPP_PpyrDC Thiamine py 77.6 65 0.0014 32.0 13.9 114 506-623 41-161 (188)
242 TIGR03457 sulphoacet_xsc sulfo 77.3 20 0.00043 41.8 11.7 116 507-626 40-161 (579)
243 TIGR02176 pyruv_ox_red pyruvat 77.3 24 0.00051 44.9 13.0 113 508-624 53-169 (1165)
244 PRK06154 hypothetical protein; 76.9 29 0.00063 40.4 12.9 149 471-623 386-553 (565)
245 PRK06546 pyruvate dehydrogenas 76.7 16 0.00036 42.5 10.8 114 506-624 398-529 (578)
246 PRK07418 acetolactate synthase 76.7 22 0.00048 41.8 11.9 117 507-626 61-183 (616)
247 PRK06725 acetolactate synthase 76.7 45 0.00098 38.9 14.4 115 507-626 53-175 (570)
248 TIGR01504 glyox_carbo_lig glyo 76.7 59 0.0013 38.1 15.4 116 508-626 43-165 (588)
249 TIGR02720 pyruv_oxi_spxB pyruv 76.2 31 0.00066 40.3 12.8 116 507-626 39-160 (575)
250 cd03375 TPP_OGFOR Thiamine pyr 75.5 27 0.00058 34.8 10.5 99 521-623 58-182 (193)
251 PRK12315 1-deoxy-D-xylulose-5- 75.4 14 0.0003 43.4 9.6 111 510-625 110-243 (581)
252 cd07038 TPP_PYR_PDC_IPDC_like 74.7 30 0.00064 33.5 10.3 114 507-624 36-162 (162)
253 TIGR00173 menD 2-succinyl-5-en 74.7 36 0.00078 38.1 12.5 115 508-626 40-167 (432)
254 PRK12474 hypothetical protein; 74.0 33 0.00071 39.4 12.2 116 508-626 45-166 (518)
255 PRK06048 acetolactate synthase 74.0 53 0.0012 38.1 14.0 115 507-626 46-168 (561)
256 cd02005 TPP_PDC_IPDC Thiamine 74.0 32 0.00068 33.9 10.5 117 505-623 39-172 (183)
257 COG4032 Predicted thiamine-pyr 73.7 4.7 0.0001 38.6 4.3 106 514-623 49-162 (172)
258 PRK09259 putative oxalyl-CoA d 73.1 63 0.0014 37.6 14.3 117 507-626 48-172 (569)
259 PRK08273 thiamine pyrophosphat 73.0 39 0.00085 39.6 12.7 148 472-626 6-165 (597)
260 PLN02573 pyruvate decarboxylas 72.2 42 0.00092 39.2 12.7 114 508-626 56-183 (578)
261 PRK09124 pyruvate dehydrogenas 72.1 58 0.0013 37.9 13.8 115 508-626 43-163 (574)
262 cd07036 TPP_PYR_E1-PDHc-beta_l 72.1 36 0.00079 33.3 10.3 34 387-425 130-164 (167)
263 TIGR03254 oxalate_oxc oxalyl-C 71.6 52 0.0011 38.1 13.2 117 507-626 41-165 (554)
264 PF02775 TPP_enzyme_C: Thiamin 71.3 35 0.00075 32.2 9.8 114 505-621 17-152 (153)
265 cd07035 TPP_PYR_POX_like Pyrim 69.6 37 0.0008 32.0 9.6 51 257-314 45-96 (155)
266 CHL00099 ilvB acetohydroxyacid 69.1 20 0.00044 41.8 9.2 114 508-626 53-174 (585)
267 PLN02980 2-oxoglutarate decarb 66.8 48 0.001 43.8 12.7 148 470-624 302-466 (1655)
268 PRK12571 1-deoxy-D-xylulose-5- 65.7 57 0.0012 38.8 12.0 49 259-315 374-423 (641)
269 TIGR03845 sulfopyru_alph sulfo 63.8 77 0.0017 30.7 10.6 51 256-314 44-95 (157)
270 PRK08327 acetolactate synthase 63.7 82 0.0018 36.7 12.7 115 508-625 52-181 (569)
271 cd02000 TPP_E1_PDC_ADC_BCADC T 62.6 32 0.00069 36.6 8.4 90 531-622 127-225 (293)
272 TIGR00204 dxs 1-deoxy-D-xylulo 62.3 64 0.0014 38.2 11.6 50 258-315 364-414 (617)
273 PF02779 Transket_pyr: Transke 62.0 1.1E+02 0.0024 29.8 11.5 37 387-426 133-170 (178)
274 PLN02790 transketolase 61.0 63 0.0014 38.5 11.2 90 533-625 140-238 (654)
275 TIGR03394 indol_phenyl_DC indo 60.7 1.1E+02 0.0025 35.3 13.1 117 507-626 39-166 (535)
276 TIGR03393 indolpyr_decarb indo 58.7 1.3E+02 0.0029 34.6 13.2 146 471-624 361-526 (539)
277 cd07033 TPP_PYR_DXS_TK_like Py 58.6 81 0.0018 30.1 9.7 48 259-314 52-100 (156)
278 COG1071 AcoA Pyruvate/2-oxoglu 57.1 47 0.001 36.7 8.6 103 518-622 144-258 (358)
279 cd07037 TPP_PYR_MenD Pyrimidin 57.0 72 0.0016 31.0 9.1 49 258-312 47-95 (162)
280 KOG1145 Mitochondrial translat 56.9 1.5E+02 0.0033 34.7 12.6 39 274-313 225-263 (683)
281 PTZ00089 transketolase; Provis 56.7 78 0.0017 37.8 11.1 90 532-624 150-248 (661)
282 TIGR03181 PDH_E1_alph_x pyruva 56.5 48 0.001 36.2 8.7 89 532-622 145-243 (341)
283 PRK12753 transketolase; Review 55.8 49 0.0011 39.5 9.1 80 544-626 162-247 (663)
284 PF04273 DUF442: Putative phos 55.5 19 0.00041 33.0 4.5 41 387-428 53-95 (110)
285 PLN02582 1-deoxy-D-xylulose-5- 54.9 88 0.0019 37.5 11.0 50 258-315 410-460 (677)
286 PRK13030 2-oxoacid ferredoxin 54.8 41 0.0009 42.6 8.6 113 508-626 75-204 (1159)
287 PLN02234 1-deoxy-D-xylulose-5- 54.1 78 0.0017 37.7 10.3 49 259-315 412-461 (641)
288 KOG1185 Thiamine pyrophosphate 53.8 55 0.0012 37.5 8.4 117 500-620 414-555 (571)
289 PRK12754 transketolase; Review 52.5 1E+02 0.0022 37.0 11.0 80 544-626 162-247 (663)
290 COG0028 IlvB Thiamine pyrophos 52.4 2.2E+02 0.0049 33.2 13.7 149 472-626 5-162 (550)
291 PRK05899 transketolase; Review 52.2 1.2E+02 0.0026 35.9 11.6 91 532-626 152-249 (624)
292 CHL00149 odpA pyruvate dehydro 50.7 65 0.0014 35.2 8.5 88 532-622 158-256 (341)
293 PLN02683 pyruvate dehydrogenas 50.0 98 0.0021 34.1 9.8 35 387-426 160-195 (356)
294 PRK05444 1-deoxy-D-xylulose-5- 48.6 1.1E+02 0.0023 36.0 10.3 112 510-626 114-243 (580)
295 PRK09193 indolepyruvate ferred 48.2 43 0.00093 42.4 7.3 113 508-626 83-212 (1165)
296 PF00676 E1_dh: Dehydrogenase 47.8 44 0.00094 35.8 6.5 102 520-622 107-222 (300)
297 COG3958 Transketolase, C-termi 45.5 1.3E+02 0.0027 32.5 9.2 65 238-315 46-112 (312)
298 PLN02225 1-deoxy-D-xylulose-5- 41.5 2E+02 0.0043 34.7 11.1 49 258-314 435-484 (701)
299 TIGR03182 PDH_E1_alph_y pyruva 40.2 1.5E+02 0.0032 32.0 9.1 91 531-623 133-232 (315)
300 cd07039 TPP_PYR_POX Pyrimidine 38.8 3.2E+02 0.0069 26.4 10.4 49 260-314 52-100 (164)
301 PF00456 Transketolase_N: Tran 37.1 1.7E+02 0.0037 32.0 9.0 94 532-628 145-246 (332)
302 PRK11892 pyruvate dehydrogenas 36.7 1.8E+02 0.0039 33.3 9.5 34 387-425 275-309 (464)
303 TIGR00232 tktlase_bact transke 35.6 3.4E+02 0.0074 32.4 12.0 49 259-314 409-457 (653)
304 PRK13029 2-oxoacid ferredoxin 35.1 63 0.0014 41.0 5.9 114 508-626 86-215 (1186)
305 PLN02269 Pyruvate dehydrogenas 34.6 1.6E+02 0.0036 32.5 8.5 72 550-623 181-257 (362)
306 PRK08659 2-oxoglutarate ferred 34.5 3.1E+02 0.0068 30.4 10.8 49 258-314 60-108 (376)
307 COG3453 Uncharacterized protei 34.4 66 0.0014 30.2 4.5 36 387-428 54-96 (130)
308 PF02776 TPP_enzyme_N: Thiamin 34.3 4.3E+02 0.0093 25.4 11.1 49 258-314 51-101 (172)
309 cd02017 TPP_E1_EcPDC_like Thia 33.4 5E+02 0.011 29.1 11.9 63 532-597 149-218 (386)
310 KOG3995 3-hydroxyanthranilate 32.6 26 0.00056 35.7 1.7 27 11-39 87-113 (279)
311 PLN02374 pyruvate dehydrogenas 32.2 1.5E+02 0.0033 33.6 7.9 88 532-622 224-322 (433)
312 PRK08366 vorA 2-ketoisovalerat 31.0 4.5E+02 0.0097 29.4 11.3 49 258-315 61-109 (390)
313 PRK07119 2-ketoisovalerate fer 29.9 79 0.0017 34.7 5.1 47 258-312 60-106 (352)
314 PF13519 VWA_2: von Willebrand 28.8 3E+02 0.0064 25.3 8.2 38 275-313 99-136 (172)
315 TIGR03710 OAFO_sf 2-oxoacid:ac 25.9 2.9E+02 0.0063 32.3 9.1 49 258-314 249-297 (562)
316 KOG0225 Pyruvate dehydrogenase 25.2 2.1E+02 0.0046 31.4 7.0 102 516-623 169-285 (394)
317 COG3105 Uncharacterized protei 22.7 15 0.00032 34.6 -1.8 21 59-79 3-23 (138)
318 cd07038 TPP_PYR_PDC_IPDC_like 21.2 5.7E+02 0.012 24.5 8.8 51 257-314 46-96 (162)
319 PF01855 POR_N: Pyruvate flavo 20.7 2.6E+02 0.0057 28.8 6.6 47 259-313 49-95 (230)
320 cd01452 VWA_26S_proteasome_sub 20.7 1.9E+02 0.0042 28.9 5.4 36 276-311 108-144 (187)
321 smart00115 CASc Caspase, inter 20.6 3.6E+02 0.0079 27.7 7.7 46 386-434 38-85 (241)
322 TIGR00173 menD 2-succinyl-5-en 20.1 6E+02 0.013 28.4 9.9 47 260-312 52-98 (432)
No 1
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=100.00 E-value=2.5e-122 Score=1009.42 Aligned_cols=497 Identities=58% Similarity=0.953 Sum_probs=476.8
Q ss_pred CccccCCCCccccCCCCHHHHHHHHHHHHHHHHHHhhccCCCCCCCccHHHHHHHHHhhcCCCCcEEEecCCchHHHHHH
Q 006251 140 TPLLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKI 219 (654)
Q Consensus 140 ~~~l~~i~~p~~~~~l~~~~L~~la~~lR~~il~~v~~~~GH~gsslg~vel~~aL~~v~~~p~Dr~I~s~GH~aY~~~~ 219 (654)
+|+|+.|++|.|+|.|+.+||++||+|||..+++.|+++|||+|++||+||+++|||++||.|.|+||||+|||+|+||+
T Consensus 2 ~~~L~~i~~P~dLk~ls~~eL~~La~EiR~~li~~vS~~GGHlgsnLGvVELTiALH~VF~sP~D~~IwDVgHQaYpHKi 81 (627)
T COG1154 2 YPLLDKINSPADLKKLSIEELPQLADEIREFLLEVVSATGGHLGSNLGVVELTIALHYVFDSPKDKLIWDVGHQAYPHKI 81 (627)
T ss_pred cchhhhcCCHHHHhhCCHHHHHHHHHHHHHHHHHHhccCCCccCCCcChhhhhHHHHHHhCCCCCCeEEecCcccchhHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHH
Q 006251 220 LTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNA 299 (654)
Q Consensus 220 l~Gr~~~l~~lrq~ggl~G~p~~~es~~~~fg~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A 299 (654)
||||++.|.++||.+|++|||+|.||+||.|++||+|++||+|+|||.|++++|++++||||||||+++.||+|||||+|
T Consensus 82 LTGR~e~f~tlRq~~GlsGf~~r~ESe~D~f~~GHsSTSiSaalG~A~A~~~~g~~~~vvaVIGDGAlt~GmA~EALN~a 161 (627)
T COG1154 82 LTGRREQFDTLRQKDGLSGFPKREESEHDWFGVGHSSTSISAALGMAKARDLKGEDRNVVAVIGDGALTGGMAFEALNNA 161 (627)
T ss_pred hcCchhhcchhhhcCCCCCCCCcccCCCcccccCchHHHHHHHhhHHHHHHhcCCCCcEEEEECCccccchHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred h-hcCCCEEEEEECCCCCcccccccCCCCCchhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhc
Q 006251 300 G-FLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGL 378 (654)
Q Consensus 300 ~-~~~lnLi~Il~dN~~~s~pt~~~~g~~~~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~ 378 (654)
+ ..+.|+|||+|||++++ ++++|+++++|+++++++.|+.+|+..|++++..|+++.+.++|+++.+|++
T Consensus 162 g~~~~~~~iVILNDNeMSI---------s~nvGal~~~L~~l~~~~~y~~~~~~~kk~l~~~~~~~~~~~~r~e~~~K~l 232 (627)
T COG1154 162 GADLKSNLIVILNDNEMSI---------SPNVGALSKHLARLRSGPFYQSLREGGKKVLSKVGPPLKRFAKRAEESIKGL 232 (627)
T ss_pred hhccCCCEEEEEeCCCccc---------CCCccHHHHHHHHHhccchHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhcc
Confidence 9 55699999999999976 5779999999999999999999999999999999999999999999999998
Q ss_pred cCCChhhhhhhcCCeEEeecCCCCHHHHHHHHHHhHhCCCCCCEEEEEEeecCCCCChhhcCccccccccCCCC-ccccc
Q 006251 379 ISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVVKFDP-KTGKQ 457 (654)
Q Consensus 379 ~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al~~ak~~~~~gP~lI~v~T~KG~G~~~ae~~~~~~Hg~~~f~~-~tg~~ 457 (654)
+.+. ++||++||+|++|+||||+++|+.+|+.+|+. ++|++||+.|.|||||+++|+++.+||++.+||+ ++|++
T Consensus 233 ~~~~--~lFeelGf~YiGPiDGHni~~Li~~Lk~~kd~--~gPvllHv~T~KGKGY~pAE~d~~~~H~v~~f~~~~tg~~ 308 (627)
T COG1154 233 LVPG--TLFEELGFNYIGPIDGHNLEELIPTLKNAKDL--KGPVLLHVVTKKGKGYKPAEEDPIKYHGVGPFDPIETGQS 308 (627)
T ss_pred cCch--hhHHHhCCeeECCcCCCCHHHHHHHHHHHhcC--CCCEEEEEEecCCCCCChhhcChhhccCCCCCCccccCcc
Confidence 8874 89999999999999999999999999999986 8999999999999999999999999999999996 88887
Q ss_pred ccCCCCchhHHHHHHHHHHHHHhhCCcEEEEecCccCCCChhhHHHhCCCCccccchhHHHHHHHHHHHHhcCCeeEEee
Q 006251 458 FKTKSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLASEGVKPFCAI 537 (654)
Q Consensus 458 ~~~~~~~~s~~~a~~~aL~~~~~~d~~vvvl~aDlg~s~~l~~f~~~fp~R~id~GIaE~~mvg~AaGlA~~G~~Pi~~t 537 (654)
.+.++...+|+++|+++|.+.+++|+++|.+++.|..++|+..|.++||+||||+||||||+|++|+|||++|++|||++
T Consensus 309 ~~~~~~~~sys~vf~~~L~~~a~~d~~ivaITaAM~~gtGL~~F~~~fP~R~fDVGIAEQHAVT~AAGlA~~G~kPvvaI 388 (627)
T COG1154 309 KKSKPSAPSYTKVFGDTLCELAAKDEKIVAITAAMPEGTGLVKFSKKFPDRFFDVGIAEQHAVTFAAGLAAEGMKPVVAI 388 (627)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEecCCCCCCChHHHHHhCchhheehhhhHHHHHHHHHHHHhCCCCCEEEE
Confidence 66667778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhHHHHHHHhhhcCCCCEEEEEecCCccCCCCCCCCChhhHHHHhcCCCCEEEecCCHHHHHHHHHHHHhCCCCc
Q 006251 538 YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRP 617 (654)
Q Consensus 538 fa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~~g~dG~tHq~~edla~~r~iPnl~V~~PsD~~E~~~ll~~al~~~~~P 617 (654)
|++|+||||||+++|+|+|++||+|+.+++|++|+||+|||+++|+++||+||||.|++|+|++|++.|+.+++..+++|
T Consensus 389 YSTFLQRAYDQliHDvaiqnLPV~faIDRAGivG~DG~TH~G~fDls~l~~iPnmvi~aP~de~el~~ml~ta~~~~~gP 468 (627)
T COG1154 389 YSTFLQRAYDQLIHDVAIQNLPVTFAIDRAGIVGADGPTHQGLFDLSFLRCIPNMVIMAPRDEEELRQMLYTALAQDDGP 468 (627)
T ss_pred ecHHHHHHHHHHHHHHHhccCCeEEEEecCcccCCCCCccccHHHHHHHhcCCCcEEecCCCHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888899
Q ss_pred EEEEecCCCCCCccCCCCCCCCCcccCceEEecc
Q 006251 618 SCFRFPRGNGIGAVLPPNNKGTPLETSLDSWPMS 651 (654)
Q Consensus 618 ~~ir~~r~~~~~~~~p~~~~~~~~~iGKa~vi~~ 651 (654)
+.||+||++........ +..++++||.+++|+
T Consensus 469 ~AiRyPrg~~~~~~~~~--~~~~~~~Gk~~i~~~ 500 (627)
T COG1154 469 VAIRYPRGNGVGVILTP--ELEPLEIGKGELLKE 500 (627)
T ss_pred eEEEecCCCCCCCCccc--ccccccccceEEEec
Confidence 99999999866543322 246899999999876
No 2
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=4.9e-117 Score=1002.96 Aligned_cols=498 Identities=53% Similarity=0.880 Sum_probs=463.0
Q ss_pred cCCCCCCCCccccCCCCccccCCCCHHHHHHHHHHHHHHHHHHh-hccCCCCCCCccHHHHHHHHHhhcCCCCcEEEecC
Q 006251 132 DFSEEKPPTPLLDTINYPIHMKNLSTEDLEQLAAELRADIVNSV-SKTGGHLSANLGVVELTLALHRVFNTPDDKIIWDV 210 (654)
Q Consensus 132 ~~~~~~~~~~~l~~i~~p~~~~~l~~~~L~~la~~lR~~il~~v-~~~~GH~gsslg~vel~~aL~~v~~~p~Dr~I~s~ 210 (654)
+|+++++.+||||+|++|.|||+|+.+||++||+|||..|++.+ +++|||++++||+||+++|||+|||.|+|+||||+
T Consensus 68 ~~~~~~~~~~~L~~i~~P~dlk~L~~~eL~~La~EiR~~li~~v~s~~GGHl~snLGvVELTvALH~VFd~p~DkiiwDv 147 (701)
T PLN02225 68 EYCDEKFETPILDSIETPLQLKNLSVKELKLLADEIRTELHSVLWKKTQKSMNPSFAAIELTLALHYVFRAPVDNILWDA 147 (701)
T ss_pred cccCCCCCCchhhhcCCHHHHhhCCHHHHHHHHHHHHHHHHHHhhcccCCCcCCCccHHHHHHHHHHHhCCCCCceeecc
Confidence 78888888999999999999999999999999999999999999 79999999999999999999999999999999999
Q ss_pred CchHHHHHHHcCChHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccc
Q 006251 211 GHQAYVHKILTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAG 290 (654)
Q Consensus 211 GH~aY~~~~l~Gr~~~l~~lrq~ggl~G~p~~~es~~~~fg~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG 290 (654)
|||+|+||+||||++.|++ ||++|++|||+|.||+||.|++||+|++||+|+|||.|+++++++++||+|||||+|+.|
T Consensus 148 gHQ~Y~HKiLTGR~~~f~~-Rq~~GlsGf~~r~ES~~D~f~~GHssTSiSaalG~a~ardl~g~~~~vvaVIGDGaltgG 226 (701)
T PLN02225 148 VEQTYAHKVLTRRWSAIPS-RQKNGISGVTSQLESEYDSFGTGHGCNSISAGLGLAVARDIKGKRDRVVAVIDNATITAG 226 (701)
T ss_pred ccccchhhHhcCChhhcCc-cccCCcCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCCcEEEEEcCcchhhh
Confidence 9999999999999999997 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCchhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHH
Q 006251 291 QAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAK 370 (654)
Q Consensus 291 ~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k 370 (654)
|+|||||+|+..+.|+|||+|||+|++.|... .|...+||+++++|++++.++.|+++|+.+|.++++++..+..+++|
T Consensus 227 ma~EaLN~~g~~~~~livILNDN~mSi~~n~~-~~~~~~vG~ls~~l~~l~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 305 (701)
T PLN02225 227 QAYEAMSNAGYLDSNMIVILNDSRHSLHPNME-EGSKASISALSSIMSKIQSSKIFRKFRELAKAMTKRIGKGMYEWAAK 305 (701)
T ss_pred hHHHHHhhhhccCCCEEEEEeCCCCCCCCCCC-CccCCccchHHHHHHHHhccchHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 99999999999999999999999998766542 45566799999999999999999999999999999999888999999
Q ss_pred HHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHHHHhHhCCCCCCEEEEEEeecCCCCChhhcCccccccccCC
Q 006251 371 VDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVVKF 450 (654)
Q Consensus 371 ~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al~~ak~~~~~gP~lI~v~T~KG~G~~~ae~~~~~~Hg~~~f 450 (654)
+++++|+++.+.+.++||++|++|+||+||||+++|+++|+++|+.+.++|++||+.|.||+
T Consensus 306 ~~~~~k~~~~~~~~~lFe~lG~~Y~GpvDGHdi~~Li~~l~~~k~~~~~~PvlvHv~T~KGk------------------ 367 (701)
T PLN02225 306 VDEYARGMVGPTGSTLFEELGLYYIGPVDGHNIEDLVCVLREVSSLDSMGPVLVHVITEENR------------------ 367 (701)
T ss_pred HHHHhhhccCCCccCcHHHcCCeEECccCCCCHHHHHHHHHHHHcCCCCCCEEEEEEecCCC------------------
Confidence 99999999977545899999999999999999999999999999874459999999999998
Q ss_pred CCcccccccCCCCchhHHHHHHHHHHHHHhhCCcEEEEecCccCCCChhhHHHhCCCCccccchhHHHHHHHHHHHHhcC
Q 006251 451 DPKTGKQFKTKSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLASEG 530 (654)
Q Consensus 451 ~~~tg~~~~~~~~~~s~~~a~~~aL~~~~~~d~~vvvl~aDlg~s~~l~~f~~~fp~R~id~GIaE~~mvg~AaGlA~~G 530 (654)
|++||+. +......+|+++|+++|.+++++|++|+++++||..+++++.|+++||+||||+|||||+|+++|+|||++|
T Consensus 368 d~~tg~~-~~~~~~~s~~~~f~~aL~~la~~D~~Iv~Itadm~~gtgl~~f~~~fPdRffDvGIAEQhaVt~AAGLA~~G 446 (701)
T PLN02225 368 DAETGKN-IMVKDRRTYSDCFVEALVMEAEKDRDIVVVHAGMEMDASLITFQERFPDRFFNVGMAEQHAVTFSAGLSSGG 446 (701)
T ss_pred CCCCCCc-CCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCccCcccHHHHHHHccccccccCccHHHHHHHHHHHHHCC
Confidence 3456652 222335789999999999999999999999999998889999999999999999999999999999999999
Q ss_pred CeeEEeehHHHHHhHHHHHHHhhhcCCCCEEEEEecCCccCCCCCCCCChhhHHHHhcCCCCEEEecCCHHHHHHHHHHH
Q 006251 531 VKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATA 610 (654)
Q Consensus 531 ~~Pi~~tfa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~~g~dG~tHq~~edla~~r~iPnl~V~~PsD~~E~~~ll~~a 610 (654)
++|||++|++|++||||||++++|++++||+++++++|++|+||+|||++||+++||+||||+|++|+|+.|+++|++++
T Consensus 447 ~kPvv~iystFlqRAyDQI~~Dval~~lpV~~vid~aGlvg~DG~TH~g~~Dia~lr~IPnm~V~aPsD~~El~~mL~~A 526 (701)
T PLN02225 447 LKPFCIIPSAFLQRAYDQVVHDVDRQRKAVRFVITSAGLVGSDGPVQCGAFDIAFMSSLPNMIAMAPADEDELVNMVATA 526 (701)
T ss_pred CEEEEEeehhHHHHHHHHHHHHHHhhcCCceEEEECCccCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred HhCCCCcEEEEecCCCCCCccCCCCCCCCCcccCceEEecc
Q 006251 611 AVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLETSLDSWPMS 651 (654)
Q Consensus 611 l~~~~~P~~ir~~r~~~~~~~~p~~~~~~~~~iGKa~vi~~ 651 (654)
+..+++|+|||+||+..+....+. .+++++++||++|+++
T Consensus 527 ~~~~~gPv~IR~pRg~~~~~~~~~-~~~~~~~iGK~~vlre 566 (701)
T PLN02225 527 AYVTDRPVCFRFPRGSIVNMNYLV-PTGLPIEIGRGRVLVE 566 (701)
T ss_pred HhcCCCCEEEEecccccCCCCcCC-CCCccccCcceEEEEe
Confidence 766779999999998754322111 1247899999999875
No 3
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=4.5e-115 Score=986.00 Aligned_cols=488 Identities=71% Similarity=1.157 Sum_probs=457.8
Q ss_pred cCCCCCCCCccccCCCCccccCCCCHHHHHHHHHHHHHHHHHHhhccCCCCCCCccHHHHHHHHHhhcCCCCcEEEecCC
Q 006251 132 DFSEEKPPTPLLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIIWDVG 211 (654)
Q Consensus 132 ~~~~~~~~~~~l~~i~~p~~~~~l~~~~L~~la~~lR~~il~~v~~~~GH~gsslg~vel~~aL~~v~~~p~Dr~I~s~G 211 (654)
+|++++|+|||||+||+|.|||+|+++||+++|.+||++|++++++++||+|++||+||++++||++|+.|+||||||+|
T Consensus 56 ~~~~~~~~~~~l~~i~~p~~~k~l~~~~L~~la~eiR~~ii~~~~~~~GHlgssLs~vEl~~aL~~vf~~p~DriI~s~G 135 (641)
T PLN02234 56 EYYSNRPPTPLLDTINHPMHMKNLSIKELKVLSDELRSDVIFNVSKTGGHLGSNLGVVELTVALHYIFNTPHDKILWDVG 135 (641)
T ss_pred cccCCCCCCchhhhcCCHHHHhhCCHHHHHHHHHHHHHHHHHHHhhcCCCccccchHHHHHHHHHHhcCCCCCeEEEecc
Confidence 88899999999999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred chHHHHHHHcCChHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccch
Q 006251 212 HQAYVHKILTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQ 291 (654)
Q Consensus 212 H~aY~~~~l~Gr~~~l~~lrq~ggl~G~p~~~es~~~~fg~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~ 291 (654)
||+|+||+++||+++|.+|||.||++|||++.+++++.|++||+|++||+|+|||+|+++++.+++|||++||||++||+
T Consensus 136 Hqaya~~~ltgr~~~l~t~r~~ggl~G~p~~~es~~d~~~tGslg~glS~a~GmA~a~~l~g~~~~v~~viGDGel~eG~ 215 (641)
T PLN02234 136 HQSYPHKILTGRRGKMKTIRQTNGLSGYTKRRESEHDSFGTGHSSTTLSAGLGMAVGRDLKGMNNSVVSVIGDGAMTAGQ 215 (641)
T ss_pred hhHHHHHHHHhhhhhhcccccCCCcCCCCCCCCCCCcEECCCchHHHHHHHHHHHHHHHhCCCCCeEEEEEccchhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCchhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHH
Q 006251 292 AYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKV 371 (654)
Q Consensus 292 ~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~ 371 (654)
+|||||+|++.++||++|+|||+++++||.+.+|.++++++++++|+++++++.|.. +.+.
T Consensus 216 ~wEAl~~a~~~~~nlivIlddN~~~~~~~~q~~g~~~~v~~l~~~l~~l~~~~~~~~----------------~~~~--- 276 (641)
T PLN02234 216 AYEAMNNAGYLHSNMIVILNDNKQVSLPTANLDGPTQPVGALSCALSRLQSNCGMIR----------------ETSS--- 276 (641)
T ss_pred HHHHHHHHhhhCCCEEEEEECCCCCcccccccCCCCCCcccHHHHHHHhhccccccc----------------CCHH---
Confidence 999999999888999999999999999998899999999999999999998887732 1122
Q ss_pred HHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHHHHhHhCCCCCCEEEEEEeecCCCCChhhcCccccccccCCC
Q 006251 372 DEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVVKFD 451 (654)
Q Consensus 372 ~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al~~ak~~~~~gP~lI~v~T~KG~G~~~ae~~~~~~Hg~~~f~ 451 (654)
++||+|||+|+++|||||+++|.++|+++++.+.++|++||++|+||+|++++|+++.+||++.+||
T Consensus 277 -------------~~fe~fG~~~~g~vDGHd~~~l~~al~~~k~~~~~~P~vI~~~T~KGkGv~~~E~~~~~~H~~~~~~ 343 (641)
T PLN02234 277 -------------TLFEELGFHYVGPVDGHNIDDLVSILETLKSTKTIGPVLIHVVTEKGRGYPYAERADDKYHGVLKFD 343 (641)
T ss_pred -------------HHHHHcCCEEEeeECCCCHHHHHHHHHHHHhcCCCCCEEEEEEEecCCCcchhhcCCcccCCCCCCC
Confidence 3499999999999999999999999999987544589999999999999999999888999999999
Q ss_pred CcccccccCCCCchhHHHHHHHHHHHHHhhCCcEEEEecCccCCCChhhHHHhCCCCccccchhHHHHHHHHHHHHhcCC
Q 006251 452 PKTGKQFKTKSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLASEGV 531 (654)
Q Consensus 452 ~~tg~~~~~~~~~~s~~~a~~~aL~~~~~~d~~vvvl~aDlg~s~~l~~f~~~fp~R~id~GIaE~~mvg~AaGlA~~G~ 531 (654)
++++++.+.....++|+++|+++|.+++++|++|+++++|++++++++.|+++||+||||+||+||+|+|+|+|||++|+
T Consensus 344 ~~~g~~~~~~~~~~sy~~af~~aL~e~a~~D~~Iv~l~adm~ggt~~~~f~~~fPdR~fdvGIAEq~~Vg~AaGLA~~G~ 423 (641)
T PLN02234 344 PETGKQFKNISKTQSYTSCFVEALIAEAEADKDIVAIHAAMGGGTMLNLFESRFPTRCFDVGIAEQHAVTFAAGLACEGL 423 (641)
T ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHHCcCEEEEECCCCCCcchHHHHHHccccccCCCcCHHHHHHHHHHHHHCCC
Confidence 99998876555568999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred eeEEeehHHHHHhHHHHHHHhhhcCCCCEEEEEecCCccCCCCCCCCChhhHHHHhcCCCCEEEecCCHHHHHHHHHHHH
Q 006251 532 KPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAA 611 (654)
Q Consensus 532 ~Pi~~tfa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~~g~dG~tHq~~edla~~r~iPnl~V~~PsD~~E~~~ll~~al 611 (654)
+|||++|++|++||||||++++|++++||+++++++|++|+||+|||+++|+++||+||||+|++|+|+.|+++|+++++
T Consensus 424 rPvv~~fs~Fl~RA~DQI~~dva~~~lpV~~v~~~aG~~g~dG~TH~~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~a~ 503 (641)
T PLN02234 424 KPFCTIYSSFMQRAYDQVVHDVDLQKLPVRFAIDRAGLMGADGPTHCGAFDVTFMACLPNMIVMAPSDEAELFNMVATAA 503 (641)
T ss_pred eEEEEehHHHHHHHHHHHHHHHhhcCCCEEEEEeCCccCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998899999999999999999999999999999999999999988
Q ss_pred hCCCCcEEEEecCCCCCCccCCCCCCCCCcccCceEEecc
Q 006251 612 VIDDRPSCFRFPRGNGIGAVLPPNNKGTPLETSLDSWPMS 651 (654)
Q Consensus 612 ~~~~~P~~ir~~r~~~~~~~~p~~~~~~~~~iGKa~vi~~ 651 (654)
..+++|+|||++|++.....+|.+.+++++++||++++++
T Consensus 504 ~~~~~Pv~ir~~R~~~~~~~~~~~~~~~~~~iGk~~vlre 543 (641)
T PLN02234 504 AIDDRPSCFRYHRGNGIGVSLPPGNKGVPLQIGRGRILRD 543 (641)
T ss_pred hCCCCCEEEEeecccccccccCCCCccccccCceEEEEEe
Confidence 7778999999999986544444333346899999999876
No 4
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=7.9e-113 Score=974.98 Aligned_cols=520 Identities=77% Similarity=1.232 Sum_probs=485.5
Q ss_pred cCCCCCCCCccccCCCCccccCCCCHHHHHHHHHHHHHHHHHHhhccCCCCCCCccHHHHHHHHHhhcCCCCcEEEecCC
Q 006251 132 DFSEEKPPTPLLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIIWDVG 211 (654)
Q Consensus 132 ~~~~~~~~~~~l~~i~~p~~~~~l~~~~L~~la~~lR~~il~~v~~~~GH~gsslg~vel~~aL~~v~~~p~Dr~I~s~G 211 (654)
+|+..++.+|||++|+.|.|+|+|+.++|+++|.+||+++++++++++||+|++||++|++++||++|+.|+||||||+|
T Consensus 23 ~~~~~~~~~~~l~~i~~p~dlk~l~~~~l~~la~~iR~~ii~~~~~~~GH~g~~Ls~vel~~aL~~~~~~p~Dr~i~s~G 102 (677)
T PLN02582 23 EYPSQRPPTPLLDTINYPIHMKNLSVKELKQLADELRSDVIFNVSKTGGHLGSSLGVVELTVALHYVFNAPQDKILWDVG 102 (677)
T ss_pred cccCCCCCCchhhhCCCHHHHhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcCccccHHHHHHHHHHhhCCCCCeEEEECc
Confidence 44444455889999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred chHHHHHHHcCChHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccch
Q 006251 212 HQAYVHKILTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQ 291 (654)
Q Consensus 212 H~aY~~~~l~Gr~~~l~~lrq~ggl~G~p~~~es~~~~fg~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~ 291 (654)
||+|+|++++||.++|.+|||.||++|||++.+++++.|++||+|+++|+|+|||+|+++++.+++|||++|||++++|+
T Consensus 103 H~ay~~~~l~gr~~~l~~~r~~g~l~g~p~~~e~~~~~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~viGDG~~~~G~ 182 (677)
T PLN02582 103 HQSYPHKILTGRRDKMHTMRQTNGLSGFTKRAESEYDCFGTGHSSTTISAGLGMAVGRDLKGKKNNVVAVIGDGAMTAGQ 182 (677)
T ss_pred chHHHHHHHHccHHHhcccccCCCcCCCCCCCCCCCceeccchhhhhHHHHHHHHHHHHhcCCCCEEEEEecccccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCchhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHH
Q 006251 292 AYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKV 371 (654)
Q Consensus 292 ~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~ 371 (654)
+|||||+|+.+++|+++|||||+++|+|+...++.++++|+++++|.+++.++.|..+|+..+.++++++....++.+|+
T Consensus 183 ~~Ealn~a~~~~~~li~iv~~N~~~s~~~~~~~s~~~~vg~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (677)
T PLN02582 183 AYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPAPPVGALSSALSRLQSSRPLRELREVAKGVTKQIGGPMHELAAKV 262 (677)
T ss_pred HHHHHHHHHhhCcCEEEEEECCCCccccccccCCCCCCccHHHHHHHHHhcchhHHHHHHHHHHHHHhCcHhHHHHHHHH
Confidence 99999999999999999999999989998888999999999999999999999999999999999999887778888999
Q ss_pred HHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHHHHhHhCCCCCCEEEEEEeecCCCCChhhcCccccccccCCC
Q 006251 372 DEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVVKFD 451 (654)
Q Consensus 372 ~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al~~ak~~~~~gP~lI~v~T~KG~G~~~ae~~~~~~Hg~~~f~ 451 (654)
++..++++.+.+.++||+|||+|+++|||||+++|.++|+++|+...++|++||++|.||+||+++|+++.+||++.+||
T Consensus 263 ~~~~k~~~~~~~~~~fe~~G~~y~g~iDGHd~~~L~~al~~~k~~~~~~P~vihv~T~KGkG~~~ae~~~~~~H~~~~f~ 342 (677)
T PLN02582 263 DEYARGMISGSGSTLFEELGLYYIGPVDGHNIDDLVTILREVKSTKTTGPVLIHVVTEKGRGYPYAERAADKYHGVVKFD 342 (677)
T ss_pred HHHhhhccCccccchHHHcCCeEEeeeCCCCHHHHHHHHHHHHhcCCCCCEEEEEEecCCCCCChhhcChhhcCCCCCCC
Confidence 99999998875557999999999999999999999999999997522689999999999999999999999999999999
Q ss_pred CcccccccCCCCchhHHHHHHHHHHHHHhhCCcEEEEecCccCCCChhhHHHhCCCCccccchhHHHHHHHHHHHHhcCC
Q 006251 452 PKTGKQFKTKSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLASEGV 531 (654)
Q Consensus 452 ~~tg~~~~~~~~~~s~~~a~~~aL~~~~~~d~~vvvl~aDlg~s~~l~~f~~~fp~R~id~GIaE~~mvg~AaGlA~~G~ 531 (654)
++++++.+......+|.++|+++|.+++++|++|+++++|+++++++..|+++||+||||+||+||+|+++|+|||+.|+
T Consensus 343 ~~~g~~~~~~~~~~~~s~a~~~aL~~~a~~d~~vv~ita~m~g~~gl~~f~~~fP~R~fdvGIAEq~~vg~AaGLA~~G~ 422 (677)
T PLN02582 343 PATGKQFKVKAKTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFARRFPTRCFDVGIAEQHAVTFAAGLACEGL 422 (677)
T ss_pred cccCCccCCCCCCcCHHHHHHHHHHHHHccCCCEEEEeCCCCCccchHHHHHHcCccccccCcCHHHHHHHHHHHHHCCC
Confidence 99997754333456899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEeehHHHHHhHHHHHHHhhhcCCCCEEEEEecCCccCCCCCCCCChhhHHHHhcCCCCEEEecCCHHHHHHHHHHHH
Q 006251 532 KPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAA 611 (654)
Q Consensus 532 ~Pi~~tfa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~~g~dG~tHq~~edla~~r~iPnl~V~~PsD~~E~~~ll~~al 611 (654)
+||+++|++|++||||||++++|++++||+++++++|++|+||+|||+++|+++||+||||+|++|+|+.|+++++++++
T Consensus 423 kPvv~~fs~Fl~RA~DQI~~dval~~lpVv~v~~~aG~vg~dG~TH~~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~al 502 (677)
T PLN02582 423 KPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTYMACLPNMVVMAPSDEAELFHMVATAA 502 (677)
T ss_pred eEEEEecHHHHHHHHHHHHHHHHhcCCCEEEEEECCCcccCCCCcccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hCCCCcEEEEecCCCCCCccCCCCCCCCCcccCceEEecc
Q 006251 612 VIDDRPSCFRFPRGNGIGAVLPPNNKGTPLETSLDSWPMS 651 (654)
Q Consensus 612 ~~~~~P~~ir~~r~~~~~~~~p~~~~~~~~~iGKa~vi~~ 651 (654)
..+++|+|||++|+..+...+|...+++++++||++|+++
T Consensus 503 ~~~~gPv~IR~pr~~~~~~~~~~~~~~~~~~iGk~~vlr~ 542 (677)
T PLN02582 503 AIDDRPSCFRYPRGNGIGVQLPPNNKGIPIEVGKGRILLE 542 (677)
T ss_pred hCCCCCEEEEEecCCCCCcccCCcccccccccCceEEEEe
Confidence 6667999999999874333333322236789999999875
No 5
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=100.00 E-value=2.3e-103 Score=897.77 Aligned_cols=494 Identities=53% Similarity=0.865 Sum_probs=456.7
Q ss_pred ccCCCCccccCCCCHHHHHHHHHHHHHHHHHHhhccCCCCCCCccHHHHHHHHHhhcCCCCcEEEecCCchHHHHHHHcC
Q 006251 143 LDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILTG 222 (654)
Q Consensus 143 l~~i~~p~~~~~l~~~~L~~la~~lR~~il~~v~~~~GH~gsslg~vel~~aL~~v~~~p~Dr~I~s~GH~aY~~~~l~G 222 (654)
|++|+.|.|+|+|+.++|+++|.+||+++++++++++||+|++||+||++++||++|+.|+||||||+|||+|+|++++|
T Consensus 1 ~~~i~~p~dl~~l~~~~l~~la~~iR~~~i~~~~~~~GH~g~~ls~vel~~aL~~~~~~~rDr~i~s~GH~~Y~~~~~~G 80 (617)
T TIGR00204 1 LSLINSPQELRLLSIDELEKLCDELRRYLLESVSASGGHLASGLGTVELTVALHYVFNTPKDQFIWDVGHQAYPHKLLTG 80 (617)
T ss_pred CCCCCCHHHHhhCCHHHHHHHHHHHHHHHHHHHhccCCCcCcchhHHHHHHHHHhhCCCCCCcEEEecchHHHHHHHHhC
Confidence 78999999999999999999999999999999998999999999999999999999998999999999999999999999
Q ss_pred ChHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhc
Q 006251 223 RRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFL 302 (654)
Q Consensus 223 r~~~l~~lrq~ggl~G~p~~~es~~~~fg~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~ 302 (654)
+.++|.+||+.|+++|||++.++.++.|++||+|+++|+|+|||+|.|+++.+.+|||++|||+++||++|||||+|+.+
T Consensus 81 ~~~~l~~~r~~g~l~g~p~~~e~~~d~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~~~GDG~~~eG~~~Ea~~~a~~~ 160 (617)
T TIGR00204 81 RREKFSTLRQKKGLHGFPKRSESEYDVFSAGHSSTSISAGLGIAVAAEKKGADRKTVCVIGDGAITAGMAFEALNHAGDL 160 (617)
T ss_pred cHHHhcchhhcCCcCCCCcCCCCCCCccCCCchHhHHHHHHHHHHHHHhhCCCCEEEEEECCcccccccHHHHHHHHHhc
Confidence 99999999999999999999888898889999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEECCCCCcccccccCCCCCchhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCC
Q 006251 303 DANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISAS 382 (654)
Q Consensus 303 ~lnLi~Il~dN~~~s~pt~~~~g~~~~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~ 382 (654)
++|+++|||||++++ ..+++.++++|.+++.++.|..+++..+++++..++....+++|+++.+|+++.+
T Consensus 161 ~l~~i~ii~~N~~~i---------~~~~~~~~~~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~- 230 (617)
T TIGR00204 161 KTDMIVILNDNEMSI---------SENVGALSNHLAQLRSGSLYQSLRDGLKKIFSKLPPIKNYLAKRTEESMKGLVVP- 230 (617)
T ss_pred CCCEEEEEECCCccc---------CCCchHHHHHHHHhhccchHHHHHHHHHHHHhcCcchhHHHHHHHHHhhhhccCc-
Confidence 999999999999753 2347889999999999999999999999998876643344888999999998887
Q ss_pred hhhhhhhcCCeEEeecCCCCHHHHHHHHHHhHhCCCCCCEEEEEEeecCCCCChhhcCccccccccCCCCcccccccCCC
Q 006251 383 GSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKS 462 (654)
Q Consensus 383 ~~~lfea~G~~~ig~vDGhDi~~L~~al~~ak~~~~~gP~lI~v~T~KG~G~~~ae~~~~~~Hg~~~f~~~tg~~~~~~~ 462 (654)
.++||+|||+|+++|||||+++|.++|+++++. ++|++||++|.||+||+++|+++.+||+..+|++++++......
T Consensus 231 -~~~f~~~G~~~~~~vDGhd~~~l~~al~~ak~~--~~P~~i~~~T~KGkG~~~~e~~~~~~H~~~~~~~~~~~~~~~~~ 307 (617)
T TIGR00204 231 -GTFFEELGFNYIGPVDGHDLLELIETLKNAKKL--KGPVFLHIQTKKGKGYKPAEKDPIGWHGVGPFDLSTGCLPKSKS 307 (617)
T ss_pred -cchHHHcCCcEEcccCCCCHHHHHHHHHHHhcC--CCCEEEEEEecCCCCCchhhcChhhccCCCCCChhhCCcCCCCC
Confidence 488999999999999999999999999999875 68999999999999999999887789999999988876533333
Q ss_pred CchhHHHHHHHHHHHHHhhCCcEEEEecCccCCCChhhHHHhCCCCccccchhHHHHHHHHHHHHhcCCeeEEeehHHHH
Q 006251 463 PTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLASEGVKPFCAIYSSFL 542 (654)
Q Consensus 463 ~~~s~~~a~~~aL~~~~~~d~~vvvl~aDlg~s~~l~~f~~~fp~R~id~GIaE~~mvg~AaGlA~~G~~Pi~~tfa~Fl 542 (654)
...+|+++|+++|.+++++|++|+++++|+.+++++++|+++||+||||+||+||+|+|+|+|||++|++||+++|++|+
T Consensus 308 ~~~~~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~~~~f~~~fP~R~~d~GIaEq~~vg~AaGlA~~G~~Pvv~~~a~Fl 387 (617)
T TIGR00204 308 ALPSYSKIFSDTLCELAKKDNKIVGITPAMPEGSGLDKFSRKFPDRYFDVAIAEQHAVTFAAGMAIEGYKPFVAIYSTFL 387 (617)
T ss_pred CCccHHHHHHHHHHHHHhhCcCEEEEECCccCCcChHHHHHHCccccccCCccHHHHHHHHHHHHHCCCEEEEEecHHHH
Confidence 45689999999999999999999999999987888999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHhhhcCCCCEEEEEecCCccCCCCCCCCChhhHHHHhcCCCCEEEecCCHHHHHHHHHHHHhCCCCcEEEEe
Q 006251 543 QRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRF 622 (654)
Q Consensus 543 ~ra~dQI~~~~a~~~lpV~~v~~~~G~~g~dG~tHq~~edla~~r~iPnl~V~~PsD~~E~~~ll~~al~~~~~P~~ir~ 622 (654)
+||||||++++|++++||+++++++|++|.||+|||+++|+++||+||||+|++|+|+.|+++++++++..+++|+|||+
T Consensus 388 ~ra~dQi~~~~a~~~lpV~i~~~~~G~~g~dG~tH~~~~dia~lr~iPgl~V~~Psd~~e~~~~l~~a~~~~~~Pv~ir~ 467 (617)
T TIGR00204 388 QRAYDQVVHDVCIQKLPVLFAIDRAGIVGADGETHQGAFDISYLRCIPNMVIMAPSDENELRQMLYTGYHYDDGPIAVRY 467 (617)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEECCCcCCCCCcccccchHHHHHhcCCCcEEEeeCCHHHHHHHHHHHHhCCCCCEEEEE
Confidence 99999999999999999999999999989999999999999999999999999999999999999999865569999999
Q ss_pred cCCCCCCccCCCCCCCCCcccCceEEecc
Q 006251 623 PRGNGIGAVLPPNNKGTPLETSLDSWPMS 651 (654)
Q Consensus 623 ~r~~~~~~~~p~~~~~~~~~iGKa~vi~~ 651 (654)
+|++.+....+. +.+++++||++|+++
T Consensus 468 ~r~~~~~~~~~~--~~~~~~~Gk~~vlr~ 494 (617)
T TIGR00204 468 PRGNAVGVELTP--EPEKLPIGKSEVLRK 494 (617)
T ss_pred ccCCcCCcccCC--ccccccCCceEEEEc
Confidence 998754322221 247899999999875
No 6
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=3e-103 Score=899.44 Aligned_cols=501 Identities=58% Similarity=0.942 Sum_probs=466.2
Q ss_pred CCCCccccCCCCccccCCCCHHHHHHHHHHHHHHHHHHhhccCCCCCCCccHHHHHHHHHhhcCCCCcEEEecCCchHHH
Q 006251 137 KPPTPLLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYV 216 (654)
Q Consensus 137 ~~~~~~l~~i~~p~~~~~l~~~~L~~la~~lR~~il~~v~~~~GH~gsslg~vel~~aL~~v~~~p~Dr~I~s~GH~aY~ 216 (654)
+|..|+|++|+.|.|+|+|+.++|+++|++||+.+++++++.+||+|++||++|++++||++|++|+||||||+||++|+
T Consensus 3 ~~~~~~l~~i~~p~dl~~l~~~~l~~~a~~iR~~ii~~~~~~~GH~g~~ls~vel~~aL~~~~~~prDr~i~s~GH~~Y~ 82 (641)
T PRK12571 3 RPKTPLLDRIKGPADLRALSDAELEQLADELRAEVISAVSETGGHLGSSLGVVELTVALHAVFNTPKDKLVWDVGHQCYP 82 (641)
T ss_pred CCCCChhhhcCCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCCcCCCchHHHHHHHHHHhcCCCCCcEEEECchHHHH
Confidence 56778999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHH
Q 006251 217 HKILTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAM 296 (654)
Q Consensus 217 ~~~l~Gr~~~l~~lrq~ggl~G~p~~~es~~~~fg~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAl 296 (654)
|++|+|+.++|.+|||.||++|||++.++++++++.||.|++++.|+|+|+|.++.+++++|||++|||+++||++|||+
T Consensus 83 ~~~l~g~~~~l~~~r~~~~l~g~p~~~e~~~~~~~~g~~~gslg~a~G~A~a~~~~~~~~~v~~v~GDG~~~eG~~~Eal 162 (641)
T PRK12571 83 HKILTGRRDRFRTLRQKGGLSGFTKRSESEYDPFGAAHSSTSISAALGFAKARALGQPDGDVVAVIGDGSLTAGMAYEAL 162 (641)
T ss_pred HHHHhCCHHHHhhhhhCCCcCCCCCCCcCCCCCcccCCCcChHHHHHHHHHHHHHhCCCCeEEEEEeCchhhcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCEEEEEECCCCCcccccccCCCCCchhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhh
Q 006251 297 NNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYAR 376 (654)
Q Consensus 297 n~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r 376 (654)
++|+.+++|+++|+|||++++ + .+++++++++..+.....|+.+++.++++++.+++++..+.+++++..+
T Consensus 163 ~~a~~~~~~li~I~dnN~~~i------~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (641)
T PRK12571 163 NNAGAADRRLIVILNDNEMSI------A---PPVGALAAYLSTLRSSDPFARLRAIAKGVEERLPGPLRDGARRARELVT 233 (641)
T ss_pred HHHHHhCCCEEEEEECCCeee------c---CCccHHHHHHHHHhcCcchHHHHHHHHHHHhhcchhHHHHHHHHHHhhh
Confidence 999999999999999999753 2 3477888999999999999999999999999999888888899999999
Q ss_pred hccCCChhhhhhhcCCeEEeecCCCCHHHHHHHHHHhHhCCCCCCEEEEEEeecCCCCChhhcCccccccccCCCCcccc
Q 006251 377 GLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVVKFDPKTGK 456 (654)
Q Consensus 377 ~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al~~ak~~~~~gP~lI~v~T~KG~G~~~ae~~~~~~Hg~~~f~~~tg~ 456 (654)
.++.+ ..+|++|||+|+++|||||+++|.++|+++++. .++|++||++|+||+|++++|+++.+|||.++|+.++++
T Consensus 234 ~~~~~--~~~f~a~G~~~~~~vdGhd~~~l~~al~~ak~~-~~~P~~I~~~T~kGkG~~~~e~~~~~~Hg~~~f~~~~~~ 310 (641)
T PRK12571 234 GMIGG--GTLFEELGFTYVGPIDGHDMEALLSVLRAARAR-ADGPVLVHVVTEKGRGYAPAEADEDKYHAVGKFDVVTGL 310 (641)
T ss_pred hccch--hhHHHHcCCEEECccCCCCHHHHHHHHHHHHhC-CCCCEEEEEEecCccCcchhhcCCCcccCCCCcCCCCCc
Confidence 98876 478999999999889999999999999999863 278999999999999999999988899999999988886
Q ss_pred cccCCCCchhHHHHHHHHHHHHHhhCCcEEEEecCccCCCChhhHHHhCCCCccccchhHHHHHHHHHHHHhcCCeeEEe
Q 006251 457 QFKTKSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLASEGVKPFCA 536 (654)
Q Consensus 457 ~~~~~~~~~s~~~a~~~aL~~~~~~d~~vvvl~aDlg~s~~l~~f~~~fp~R~id~GIaE~~mvg~AaGlA~~G~~Pi~~ 536 (654)
+.+.+....+|+++|+++|.+++++|++|+++++|+.+++++++|+++||+||||+||+||+|+|+|+|||+.|++||++
T Consensus 311 ~~~~~~~~~~~~~~f~~~L~~la~~d~~iv~isadl~~~~~~~~f~~~~p~R~id~GIaE~~mvg~AaGlA~~G~~P~v~ 390 (641)
T PRK12571 311 QKKSAPSAPSYTSVFGEELTKEAAEDSDIVAITAAMPLGTGLDKLQKRFPNRVFDVGIAEQHAVTFAAGLAAAGLKPFCA 390 (641)
T ss_pred ccCCCccchhHHHHHHHHHHHHHhhCCCEEEEeCCccCCCChHHHHHhCCCcccccCccHHHHHHHHHHHHHCCCEEEEE
Confidence 54333345789999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred ehHHHHHhHHHHHHHhhhcCCCCEEEEEecCCccCCCCCCCCChhhHHHHhcCCCCEEEecCCHHHHHHHHHHHHhCCCC
Q 006251 537 IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDR 616 (654)
Q Consensus 537 tfa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~~g~dG~tHq~~edla~~r~iPnl~V~~PsD~~E~~~ll~~al~~~~~ 616 (654)
+|++|++||+|||++++|++++||+++++++|++|+||+|||+++|+++||+||||+|++|+|+.|+++++++|+..+++
T Consensus 391 ~f~~Fl~ra~dQI~~~~a~~~lpv~~v~~~~G~~g~dG~THq~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~ 470 (641)
T PRK12571 391 VYSTFLQRGYDQLLHDVALQNLPVRFVLDRAGLVGADGATHAGAFDLAFLTNLPNMTVMAPRDEAELRHMLRTAAAHDDG 470 (641)
T ss_pred ehHHHHHHHHHHHHHHHhhcCCCeEEEEECCCcCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999889999999999999999999999999999999999999999865689
Q ss_pred cEEEEecCCCCCCccCCCCCCCCCcccCceEEecc
Q 006251 617 PSCFRFPRGNGIGAVLPPNNKGTPLETSLDSWPMS 651 (654)
Q Consensus 617 P~~ir~~r~~~~~~~~p~~~~~~~~~iGKa~vi~~ 651 (654)
|+|||++|++.+...+|. +++.+++||++++++
T Consensus 471 P~~ir~~r~~~~~~~~~~--~~~~~~~gk~~vlr~ 503 (641)
T PRK12571 471 PIAVRFPRGEGVGVEIPA--EGTILGIGKGRVPRE 503 (641)
T ss_pred cEEEEEecCcCCccccCC--CCccccCceeEEEec
Confidence 999999999754333332 246789999999875
No 7
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=2.3e-95 Score=827.36 Aligned_cols=458 Identities=40% Similarity=0.658 Sum_probs=409.5
Q ss_pred cccCCCCccccCCCCHHHHHHHHHHHHHHHHHHhhccCCCCCCCccHHHHHHHHHhhcCCCCcEEEecCCchHHHHHHHc
Q 006251 142 LLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILT 221 (654)
Q Consensus 142 ~l~~i~~p~~~~~l~~~~L~~la~~lR~~il~~v~~~~GH~gsslg~vel~~aL~~v~~~p~Dr~I~s~GH~aY~~~~l~ 221 (654)
||+.|+.|.|+|+|+.+||++||+|||.++++.+++++||++++||++|+++|||++||.|+|+||||+|||+|+|++++
T Consensus 2 ~l~~~~~p~d~~~l~~~~l~~l~~~ir~~~~~~~~~~~Gh~~~~lg~vel~~al~~~f~~~~D~ii~d~ghr~~~~~l~~ 81 (581)
T PRK12315 2 YLEKINSPADLKKLSLDELEQLASEIRTALLEKDSAHGGHVGPNLGVVELTIALHYVFNSPKDKIVWDVSHQSYPHKMLT 81 (581)
T ss_pred chhhcCCHHHHhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcCcchhHHHHHHHHHhhcCCCCCcEEEecCCchHHHHHHc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhh
Q 006251 222 GRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGF 301 (654)
Q Consensus 222 Gr~~~l~~lrq~ggl~G~p~~~es~~~~fg~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~ 301 (654)
|++..+.+.|++|+++|||++.+++++.++.||+|+++|+|+|||+|+++++.+++|||++|||++++|++|||||+|+.
T Consensus 82 G~~~~~~~~~~~g~~~G~~~~~~s~~~~~~~g~~~~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~eG~~~EAln~A~~ 161 (581)
T PRK12315 82 GRKEAFLDPDHYDDVTGYTNPEESEHDFFTVGHTSTSIALATGLAKARDLKGEKGNIIAVIGDGSLSGGLALEGLNNAAE 161 (581)
T ss_pred CCccchhhHHHcCCCCCCCCCCCCCCCCcCCCcHHHHHHHHHHHHHHHHhcCCCCeEEEEECchhhhcchHHHHHHHHHh
Confidence 99988888999999999999998999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEEECCCCCcccccccCCCCCchhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCC
Q 006251 302 LDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISA 381 (654)
Q Consensus 302 ~~lnLi~Il~dN~~~s~pt~~~~g~~~~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~ 381 (654)
|++|+++|||||++++ + .+++.++..+..++.... .
T Consensus 162 ~k~~li~Ii~dN~~si------~---~~~~~~~~~l~~~~~~~~-------------------~---------------- 197 (581)
T PRK12315 162 LKSNLIIIVNDNQMSI------A---ENHGGLYKNLKELRDTNG-------------------Q---------------- 197 (581)
T ss_pred hCCCEEEEEECCCCcC------C---CCCchhhhhhhhhhhccc-------------------c----------------
Confidence 9999999999999753 2 223444333322211100 0
Q ss_pred ChhhhhhhcCCeEEeecCCCCHHHHHHHHHHhHhCCCCCCEEEEEEeecCCCCChhhcCccccccccCCCCcccccccCC
Q 006251 382 SGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTK 461 (654)
Q Consensus 382 ~~~~lfea~G~~~ig~vDGhDi~~L~~al~~ak~~~~~gP~lI~v~T~KG~G~~~ae~~~~~~Hg~~~f~~~tg~~~~~~ 461 (654)
+..++|++|||++++++||||++++.++++++++ .++|++||++|+||+||++++.+..+||+..+|+.++++..++.
T Consensus 198 ~~~~~~~a~G~~~~~v~DG~D~~~l~~a~~~a~~--~~gP~~i~~~T~kG~G~~~~~~~~~~~h~~~~f~~~~~~~~~~~ 275 (581)
T PRK12315 198 SENNLFKAMGLDYRYVEDGNDIESLIEAFKEVKD--IDHPIVLHIHTLKGKGYQPAEENKEAFHWHMPFDLETGQSKVPA 275 (581)
T ss_pred cHHHHHHhcCCeEEEeeCCCCHHHHHHHHHHHHh--CCCCEEEEEEeecCCCCChhhcCHHhcCCCCCCCcccCcccCCC
Confidence 1123599999999977799999999999999987 37999999999999999887777789999988998887644322
Q ss_pred CCchhHHHHHHHHHHHHHhhCCcEEEEecCccCCCChhhHHHhCCCCccccchhHHHHHHHHHHHHhcCCeeEEeehHHH
Q 006251 462 SPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLASEGVKPFCAIYSSF 541 (654)
Q Consensus 462 ~~~~s~~~a~~~aL~~~~~~d~~vvvl~aDlg~s~~l~~f~~~fp~R~id~GIaE~~mvg~AaGlA~~G~~Pi~~tfa~F 541 (654)
. ..+|+++|+++|.+++++|++++++++|++++++++.|.++||+||||+||+||+|+++|+|||++|++||+.+|++|
T Consensus 276 ~-~~~~~~~~~~~l~~~~~~d~~i~~i~~~~~~~~~~~~f~~~fP~R~id~GIaEq~~v~~AaGlA~~G~~Pvv~~fs~F 354 (581)
T PRK12315 276 S-GESYSSVTLDYLLKKIKEGKPVVAINAAIPGVFGLKEFRKKYPDQYVDVGIAEQESVAFASGIAANGARPVIFVNSTF 354 (581)
T ss_pred C-CcCHHHHHHHHHHHHhccCCCEEEEeCccccccCcHHHHHhccccccCCCchHHHHHHHHHHHHHCcCeEEEEeeHHH
Confidence 2 568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHhhhcCCCCEEEEEecCCccCCCCCCCCChhhHHHHhcCCCCEEEecCCHHHHHHHHHHHHhCCCCcEEEE
Q 006251 542 LQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFR 621 (654)
Q Consensus 542 l~ra~dQI~~~~a~~~lpV~~v~~~~G~~g~dG~tHq~~edla~~r~iPnl~V~~PsD~~E~~~ll~~al~~~~~P~~ir 621 (654)
++||||||++++|++++||+++++++|+.+ ||+|||++||+++||+||||+|++|+|+.|+++++++|+..+++|+|||
T Consensus 355 l~ra~dQi~~d~a~~~lpv~~~~~~~g~~~-dG~TH~~~~Dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~gP~~ir 433 (581)
T PRK12315 355 LQRAYDQLSHDLAINNNPAVMIVFGGSISG-NDVTHLGIFDIPMISNIPNLVYLAPTTKEELIAMLEWALTQHEHPVAIR 433 (581)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEECCcccC-CCccccccHHHHHHhcCCCCEEEecCCHHHHHHHHHHHHhCCCCcEEEE
Confidence 999999999999999999999999999887 9999999999999999999999999999999999999986557999999
Q ss_pred ecCCCCCCccCCCCCCCCCcccCceEEecc
Q 006251 622 FPRGNGIGAVLPPNNKGTPLETSLDSWPMS 651 (654)
Q Consensus 622 ~~r~~~~~~~~p~~~~~~~~~iGKa~vi~~ 651 (654)
++|++.+.... ...+++.||++|+++
T Consensus 434 ~~r~~~~~~~~----~~~~~~~~k~~v~~~ 459 (581)
T PRK12315 434 VPEHGVESGPT----VDTDYSTLKYEVTKA 459 (581)
T ss_pred EcCCccCCCCC----CccCcccceEEEEec
Confidence 99997543211 123455679888875
No 8
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=1.4e-92 Score=806.40 Aligned_cols=460 Identities=61% Similarity=0.974 Sum_probs=410.9
Q ss_pred CCCCccccCCCCccccCCCCHHHHHHHHHHHHHHHHHHhhccCCCCCCCccHHHHHHHHHhhcCCCCcEEEecCCchHHH
Q 006251 137 KPPTPLLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYV 216 (654)
Q Consensus 137 ~~~~~~l~~i~~p~~~~~l~~~~L~~la~~lR~~il~~v~~~~GH~gsslg~vel~~aL~~v~~~p~Dr~I~s~GH~aY~ 216 (654)
++..|||+.|+.|.|+|.|+.++|+++|++||..+++|+.+++||+|++||++|++++||++|+.++||||+|+||++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~iR~~~~~~~~~~~gH~g~~ls~~~i~~~L~~~~~~~rDr~ils~GH~~y~ 80 (580)
T PRK05444 1 IPKYPLLDTINSPADLKKLSEEELPQLADEIREFLIDVVSKTGGHLGSNLGVVELTVALHYVFDTPKDRIIWDVGHQAYP 80 (580)
T ss_pred CCCCchhhccCCHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcCCCccHHHHHHHHHHhcCCCCccEEEeccHHHHH
Confidence 35679999999999999999999999999999999999988899999999999999999999998999999999999999
Q ss_pred HHHHcCChHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhHHHHHHHHHHHHHc-CCCCeEEEEEcCCCcccchHHHH
Q 006251 217 HKILTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDIL-GKNNNVISVIGDGAMTAGQAYEA 295 (654)
Q Consensus 217 ~~~l~Gr~~~l~~lrq~ggl~G~p~~~es~~~~fg~G~lG~~is~AlGmAlA~kl~-g~~~~VvaviGDGal~eG~~~EA 295 (654)
|++++|+.++|.+||+.++++|||++.+++++++++|++|+++|+|+|+|+|.|++ +++++|||++|||+++||++|||
T Consensus 81 ~~~~~g~~~~l~~~~~~~s~~g~p~~~~~~~~~~~~G~lG~gl~~AvG~A~a~~~~~~~~~~v~~i~GDG~l~eG~~~Ea 160 (580)
T PRK05444 81 HKILTGRRDRFDTLRQKGGLSGFPKRSESEYDTFGAGHSSTSISAALGMAKARDLKGGEDRKVVAVIGDGALTGGMAFEA 160 (580)
T ss_pred HHHHhCcHHHhcCcccCCCCCCCCCCCCCCCeeECCChHHHHHHHHHHHHHHHHhhCCCCCeEEEEEcccccccCHHHHH
Confidence 99999999999999999999999999889999999999999999999999999998 68899999999999999999999
Q ss_pred HHHHhhcCCCEEEEEECCCCCcccccccCCCCCchhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHh
Q 006251 296 MNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYA 375 (654)
Q Consensus 296 ln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~ 375 (654)
+++|+++++|+++|+|||++++ ++....+. ..+. ..++
T Consensus 161 l~~A~~~~~nli~IvdnN~~~i------~~~~~~~~---~~~~-------------------------~~~~-------- 198 (580)
T PRK05444 161 LNNAGDLKSDLIVILNDNEMSI------SPNVGALS---NYLA-------------------------RLRS-------- 198 (580)
T ss_pred HHHHHhhCCCEEEEEECCCCcC------CCcchhhh---hhhc-------------------------cccH--------
Confidence 9999999999999999998642 22211100 0000 0111
Q ss_pred hhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHHHHhHhCCCCCCEEEEEEeecCCCCChhhcCccccccccCCCCccc
Q 006251 376 RGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVVKFDPKTG 455 (654)
Q Consensus 376 r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al~~ak~~~~~gP~lI~v~T~KG~G~~~ae~~~~~~Hg~~~f~~~tg 455 (654)
..+|++|||+++.++||||+++|.++++++++. ++|++|+++|.||+|++++|+++.+||+.+.|+.+.+
T Consensus 199 --------~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~~--~~P~lI~~~T~kg~G~~~~e~~~~~~h~~~~~~~~~~ 268 (580)
T PRK05444 199 --------STLFEELGFNYIGPIDGHDLDALIETLKNAKDL--KGPVLLHVVTKKGKGYAPAEADPIKYHGVGKFDPETG 268 (580)
T ss_pred --------HHHHHHcCCCeeeeeCCCCHHHHHHHHHHHHhC--CCCEEEEEEecCCcCCChhhcCccccCCCCCCCcccC
Confidence 124899999999778999999999999998874 6999999999999999999887778999998887665
Q ss_pred ccccC-CCCchhHHHHHHHHHHHHHhhCCcEEEEecCccCCCChhhHHHhCCCCccccchhHHHHHHHHHHHHhcCCeeE
Q 006251 456 KQFKT-KSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLASEGVKPF 534 (654)
Q Consensus 456 ~~~~~-~~~~~s~~~a~~~aL~~~~~~d~~vvvl~aDlg~s~~l~~f~~~fp~R~id~GIaE~~mvg~AaGlA~~G~~Pi 534 (654)
+..++ .....+|+++|+++|.+++++|++++++++|+.+++++..|+++||+||||+||+||+|+|+|+|||++|++||
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~vv~~~adl~~~~~~~~f~~~~p~R~i~~GIaE~~mvg~A~GlA~~G~~p~ 348 (580)
T PRK05444 269 EQPKSSKPGKPSYTKVFGETLCELAEKDPKIVAITAAMPEGTGLVKFSKRFPDRYFDVGIAEQHAVTFAAGLATEGLKPV 348 (580)
T ss_pred CccccCCCCcccHHHHHHHHHHHHHhhCCCEEEEECCcCCCCCHHHHHHHhhhhccCCChHHHHHHHHHHHHHHCCCeeE
Confidence 43322 12236899999999999999999999999999877888889999999999999999999999999999999999
Q ss_pred EeehHHHHHhHHHHHHHhhhcCCCCEEEEEecCCccCCCCCCCCChhhHHHHhcCCCCEEEecCCHHHHHHHHHHHHhCC
Q 006251 535 CAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVID 614 (654)
Q Consensus 535 ~~tfa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~~g~dG~tHq~~edla~~r~iPnl~V~~PsD~~E~~~ll~~al~~~ 614 (654)
+++|++|+.||+|||++++|++++||+++++++|++|+||+|||++||+++||+||||+|++|+|+.|+++|+++++..+
T Consensus 349 ~~~f~~F~~ra~dQi~~~~a~~~~pv~~v~~~~G~~g~dG~tH~~~edia~lr~iP~l~V~~Psd~~e~~~~l~~a~~~~ 428 (580)
T PRK05444 349 VAIYSTFLQRAYDQVIHDVALQNLPVTFAIDRAGLVGADGPTHQGAFDLSYLRCIPNMVIMAPSDENELRQMLYTALAYD 428 (580)
T ss_pred EEeeHHHHHHHHHHHHHHhhhcCCCEEEEEeCCCcCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999998889999999999999999999999999999999999999998666
Q ss_pred CCcEEEEecCCCCCCccCCCCCCCCCcccCceEEecc
Q 006251 615 DRPSCFRFPRGNGIGAVLPPNNKGTPLETSLDSWPMS 651 (654)
Q Consensus 615 ~~P~~ir~~r~~~~~~~~p~~~~~~~~~iGKa~vi~~ 651 (654)
++|+|||++|++.+...++ +.+++++||++|+++
T Consensus 429 ~~P~~ir~~r~~~~~~~~~---~~~~~~~Gk~~vl~~ 462 (580)
T PRK05444 429 DGPIAIRYPRGNGVGVELP---ELEPLPIGKGEVLRE 462 (580)
T ss_pred CCcEEEEecCCCCCCCCCC---CcccccCCceEEEEc
Confidence 8999999999985432222 247899999999875
No 9
>PRK12753 transketolase; Reviewed
Probab=100.00 E-value=2.7e-80 Score=711.88 Aligned_cols=432 Identities=20% Similarity=0.285 Sum_probs=363.4
Q ss_pred HHHHHHHHHHHHHHhhc-cCCCCCCCccHHHHHHHHHhh-cC----C----CCcEEEecCCchH---HHHHHHcCCh---
Q 006251 161 EQLAAELRADIVNSVSK-TGGHLSANLGVVELTLALHRV-FN----T----PDDKIIWDVGHQA---YVHKILTGRR--- 224 (654)
Q Consensus 161 ~~la~~lR~~il~~v~~-~~GH~gsslg~vel~~aL~~v-~~----~----p~Dr~I~s~GH~a---Y~~~~l~Gr~--- 224 (654)
+++|++||.++++|+.+ ++||+|++||++|++++||+. ++ + ++||||+|+||++ |++++++|+.
T Consensus 5 ~~~a~~iR~~~~~~~~~a~~GH~g~~ls~~~i~~~Ly~~~l~~~p~~p~~~~rDrfvls~GH~~~~lYa~l~~~G~~~~~ 84 (663)
T PRK12753 5 KDLANAIRALSMDAVQKANSGHPGAPMGMADIAEVLWRDFLKHNPTNPTWYDRDRFILSNGHASMLLYSLLHLTGYDLPI 84 (663)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHhCCCccCCCCCCCCcEEEecccHHHHHHHHHHHhCCCCCH
Confidence 57799999999999987 899999999999999999964 32 2 2799999999999 9999999974
Q ss_pred HHHHHHHhcCC-CCCCCCCCCCCccccCcccchhhHHHHHHHHHHHHHcCC----------CCeEEEEEcCCCcccchHH
Q 006251 225 SRMNTMRKTSG-LAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGK----------NNNVISVIGDGAMTAGQAY 293 (654)
Q Consensus 225 ~~l~~lrq~gg-l~G~p~~~es~~~~fg~G~lG~~is~AlGmAlA~kl~g~----------~~~VvaviGDGal~eG~~~ 293 (654)
++|.+|||.++ ++|||+...+++.++++|++|+++++|+|||+|.|+++. +++|||++|||+++||++|
T Consensus 85 e~L~~fr~~~s~~~ghp~~~~~pgve~~tG~lG~gl~~AvG~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~ 164 (663)
T PRK12753 85 EELKNFRQLHSKTPGHPEIGYTPGVETTTGPLGQGLANAVGLAIAERTLAAQFNRPGHEIVDHYTYVFMGDGCLMEGISH 164 (663)
T ss_pred HHHHHhccCCCCCCCCCCCCCCCCcccCCCcccccHHHHHHHHHHHHHhhhhcCCccccccCCEEEEEECcCccccHHHH
Confidence 88999999987 799999877899999999999999999999999998753 6899999999999999999
Q ss_pred HHHHHHhhcCC-CEEEEEECCCCCcccccccCCCCCchhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHH
Q 006251 294 EAMNNAGFLDA-NLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVD 372 (654)
Q Consensus 294 EAln~A~~~~l-nLi~Il~dN~~~s~pt~~~~g~~~~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~ 372 (654)
||+|+|+.+++ ||++|+|||++++ ++++..+. .+++.++
T Consensus 165 EA~~~A~~~kL~nLi~ivd~N~~~i------~~~~~~~~--------------------------------~~~~~~~-- 204 (663)
T PRK12753 165 EVCSLAGTLGLGKLIGFYDHNGISI------DGETEGWF--------------------------------TDDTAKR-- 204 (663)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCcC------CCChhhhc--------------------------------ChhHHHH--
Confidence 99999999987 5999999999643 33332110 0233333
Q ss_pred HHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHHHHhHhCCCCCCEEEEEEeecCCCCChhhcCcccccccc----
Q 006251 373 EYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVV---- 448 (654)
Q Consensus 373 ~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al~~ak~~~~~gP~lI~v~T~KG~G~~~ae~~~~~~Hg~~---- 448 (654)
|++|||+++.+|||||+++|.++++++++. .++|++|+++|+||+|++++|+. .+||+.+
T Consensus 205 --------------f~a~Gw~~~~~vDGhD~~~i~~a~~~a~~~-~~~P~~I~~~T~kG~G~~~~e~~-~~~H~~~l~~~ 268 (663)
T PRK12753 205 --------------FEAYHWHVIHEIDGHDPQAIKEAILEAQSV-KDKPSLIICRTIIGFGSPNKAGK-EESHGAPLGEE 268 (663)
T ss_pred --------------HHHcCCeEEceeCCCCHHHHHHHHHHHHHC-CCCeEEEEEEEeecCCCCcccCC-CCccCCCCCHH
Confidence 999999999668999999999999998864 47899999999999999998754 6789843
Q ss_pred --------------CCCC-----------cccccc--------------------------c---C--------------
Q 006251 449 --------------KFDP-----------KTGKQF--------------------------K---T-------------- 460 (654)
Q Consensus 449 --------------~f~~-----------~tg~~~--------------------------~---~-------------- 460 (654)
+|+. +++++. + +
T Consensus 269 ~~~~~~~~l~~~~~~F~v~~~v~~~~~~~~~~~~~~~~w~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 348 (663)
T PRK12753 269 EVALTRQKLGWHHPPFEIPKEIYAAWDAREKGEKAEQAWNEKFAAYKKAYPELAAEFTRRMSGGLPKDWEKKTQKYINEL 348 (663)
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHhhhhchHHHHHHHHHHHHHHHHCHHHHHHHHHHhcCCCChhHHHHHHHHHHHh
Confidence 2332 111100 0 0
Q ss_pred --CCCchhHHHHHHHHHHHHHhhCCcEEEEecCccCCCCh-----hhHHHhCCCCccccchhHHHHHHHHHHHHh-cCCe
Q 006251 461 --KSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGL-----NYFQKRFPDRCFDVGIAEQHAVTFAAGLAS-EGVK 532 (654)
Q Consensus 461 --~~~~~s~~~a~~~aL~~~~~~d~~vvvl~aDlg~s~~l-----~~f~~~fp~R~id~GIaE~~mvg~AaGlA~-~G~~ 532 (654)
..+....+++++++|.++++++|+++++++|++.++.+ ..|+++||+||||+||+||+|+++|+|||+ .|++
T Consensus 349 ~~~~~~~a~r~~~g~~L~~l~~~~p~lv~~sADl~~S~~~~~~~~~~f~~~~p~r~i~~GIaEq~mv~~aaGlA~~~G~~ 428 (663)
T PRK12753 349 QANPAKIATRKASQNTLEAYGPLLPELLGGSADLAPSNLTIWSGSKSLKEDPAGNYIHYGVREFGMTAIANGIAHHGGFV 428 (663)
T ss_pred hccccccHHHHHHHHHHHHHHhhCCCeEEEccccccccCcccccccchhhcCCCCEEEeeecHHHHHHHHHHHHHhCCCe
Confidence 01233456688889999999999999999999988876 789999999999999999999999999999 7899
Q ss_pred eEEeehHHHHHhHHHHHHHhhhcCCCCEEEEEecCCc-cCCCCCCCCChhhHHHHhcCCCCEEEecCCHHHHHHHHHHHH
Q 006251 533 PFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAA 611 (654)
Q Consensus 533 Pi~~tfa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~-~g~dG~tHq~~edla~~r~iPnl~V~~PsD~~E~~~ll~~al 611 (654)
||++||++|++|++|||+.. |++++||+++++++|+ +|+||+|||++||+++||.||||+|++|+|++|++.+++.++
T Consensus 429 P~~~tf~~F~~r~~~qir~~-a~~~l~V~~v~thdg~~~G~DG~THq~iedla~lR~iPn~~v~~PaD~~E~~~~~~~al 507 (663)
T PRK12753 429 PYTATFLMFVEYARNAARMA-ALMKARQIMVYTHDSIGLGEDGPTHQPVEQLASLRLTPNFSTWRPCDQVEAAVAWKLAI 507 (663)
T ss_pred EEEEehHHHHHHHHHHHHHH-HhcCCCeEEEEeCCCcccCCCCcccccHHHHHHHhcCCCCEEEccCCHHHHHHHHHHHH
Confidence 99999999999999999864 9999999999999998 799999999999999999999999999999999999999998
Q ss_pred hCCCCcEEEEecCCCCCCccCCCCCCCCCcccCceEEecc
Q 006251 612 VIDDRPSCFRFPRGNGIGAVLPPNNKGTPLETSLDSWPMS 651 (654)
Q Consensus 612 ~~~~~P~~ir~~r~~~~~~~~p~~~~~~~~~iGKa~vi~~ 651 (654)
...++|+|||++|++.+.. .........+..|+ .|+++
T Consensus 508 ~~~~gP~~irl~R~~~~~~-~~~~~~~~~~~~G~-~vl~~ 545 (663)
T PRK12753 508 ERHNGPTALILSRQNLAQQ-ERTPEQVKNIARGG-YILKD 545 (663)
T ss_pred hcCCCCEEEEecCCCCCCC-CCcccchhhccCCc-EEEec
Confidence 7568999999999985432 11100013456665 66654
No 10
>PTZ00089 transketolase; Provisional
Probab=100.00 E-value=3.7e-80 Score=711.58 Aligned_cols=431 Identities=25% Similarity=0.356 Sum_probs=362.7
Q ss_pred HHHHHHHHHHHHHHHHhhc-cCCCCCCCccHHHHHHHHHh-h--cCC------CCcEEEecCCchH---HHHHHHcCCh-
Q 006251 159 DLEQLAAELRADIVNSVSK-TGGHLSANLGVVELTLALHR-V--FNT------PDDKIIWDVGHQA---YVHKILTGRR- 224 (654)
Q Consensus 159 ~L~~la~~lR~~il~~v~~-~~GH~gsslg~vel~~aL~~-v--~~~------p~Dr~I~s~GH~a---Y~~~~l~Gr~- 224 (654)
..+++|++||..+++++.+ ++||+|++||++|++++||+ + |+. ++||||||+||++ |+|++++|++
T Consensus 5 ~~~~~a~~iR~~~~~~~~~a~~GH~g~~ls~~ei~~~L~~~~l~~~~~~~~~~~rDr~vls~GH~~~~lYa~l~l~G~~~ 84 (661)
T PTZ00089 5 IDEKCANEIRCLSADLVQKANSGHPGAPMGMAPIAHILWSEVMKYNPKDPRWINRDRFVLSNGHASALLYSMLHLTGYDL 84 (661)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHhhcCCCcCCCCCCCCEEEEeCcchHHHHHHHHHHcCCCC
Confidence 4578899999999999966 89999999999999999996 5 432 4899999999999 9999999984
Q ss_pred --HHHHHHHhcCC-CCCCCCCCCCCccccCcccchhhHHHHHHHHHHHHHcCC----------CCeEEEEEcCCCcccch
Q 006251 225 --SRMNTMRKTSG-LAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGK----------NNNVISVIGDGAMTAGQ 291 (654)
Q Consensus 225 --~~l~~lrq~gg-l~G~p~~~es~~~~fg~G~lG~~is~AlGmAlA~kl~g~----------~~~VvaviGDGal~eG~ 291 (654)
+.|.+||+.++ ++|||++.+++++++++||+|++++.|+|||+|+|+++. +++|||++|||+++||+
T Consensus 85 ~~~~l~~fr~~~s~~~ghp~~~~~~gv~~~tG~lG~gls~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~v~GDG~l~eG~ 164 (661)
T PTZ00089 85 SMEDLKNFRQLGSRTPGHPERHITPGVEVTTGPLGQGIANAVGLAIAEKHLAAKFNRPGHPIFDNYVYVICGDGCLQEGV 164 (661)
T ss_pred CHHHHHhcCCCCCCCCCCCCCCCCCCcccCCcchhhhHHHHHHHHHHHHHHhhhccCccccCcCCEEEEEECccchhhHH
Confidence 77889999987 789999988999999999999999999999999998754 78999999999999999
Q ss_pred HHHHHHHHhhcCC-CEEEEEECCCCCcccccccCCCCCchhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHH
Q 006251 292 AYEAMNNAGFLDA-NLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAK 370 (654)
Q Consensus 292 ~~EAln~A~~~~l-nLi~Il~dN~~~s~pt~~~~g~~~~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k 370 (654)
+|||+|+|+.+++ ||++|+|||++++ ++++... ..+++.+
T Consensus 165 ~~EAl~~A~~~~L~nLi~i~d~N~~~i------~~~~~~~--------------------------------~~~~~~~- 205 (661)
T PTZ00089 165 SQEALSLAGHLGLEKLIVLYDDNKITI------DGNTDLS--------------------------------FTEDVEK- 205 (661)
T ss_pred HHHHHHHHHHhCCCCEEEEEECCCccc------ccCcccc--------------------------------cCccHHH-
Confidence 9999999999985 6999999999643 3332210 0022333
Q ss_pred HHHHhhhccCCChhhhhhhcCCeEEeecCCC-CHHHHHHHHHHhHhCCCCCCEEEEEEeecCCCCChhhcCccccccccC
Q 006251 371 VDEYARGLISASGSTFFEELGLYYIGPVDGH-NVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVVK 449 (654)
Q Consensus 371 ~~~~~r~~~~~~~~~lfea~G~~~ig~vDGh-Di~~L~~al~~ak~~~~~gP~lI~v~T~KG~G~~~ae~~~~~~Hg~~~ 449 (654)
+|++|||+|+.++||| |+++|.++++++++. .++|++||++|.||+|+ .+| +..+||+.+.
T Consensus 206 ---------------~f~a~G~~~i~v~dG~~D~~~l~~a~~~a~~~-~~~P~~I~~~T~kG~G~-~~e-~~~~~H~~~~ 267 (661)
T PTZ00089 206 ---------------KYEAYGWHVIEVDNGNTDFDGLRKAIEEAKKS-KGKPKLIIVKTTIGYGS-SKA-GTEKVHGAPL 267 (661)
T ss_pred ---------------HHHhcCCcEEEeCCCCCCHHHHHHHHHHHHhc-CCCcEEEEEEeeecCCC-CcC-CCCCccCCCC
Confidence 3999999999655999 999999999999864 26899999999999994 444 4568998762
Q ss_pred -------------------CCCc--cc----------cc----------------------c------------------
Q 006251 450 -------------------FDPK--TG----------KQ----------------------F------------------ 458 (654)
Q Consensus 450 -------------------f~~~--tg----------~~----------------------~------------------ 458 (654)
|+.. .. +. +
T Consensus 268 ~~~~~~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 347 (661)
T PTZ00089 268 GDEDIAQVKELFGLDPEKKFHVSEEVRQFFEQHVEKKKENYEAWKKRFAKYTAAFPKEAQAIERRFKGELPPGWEKKLPK 347 (661)
T ss_pred CHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHCHHHHHHHHHHhccCCchhhhhhhhh
Confidence 4431 11 00 0
Q ss_pred -cCCCCchhHHHHHHHHHHHHHhhCCcEEEEecCccCCCCh-----hhHHHhCC-CCccccchhHHHHHHHHHHHHh-cC
Q 006251 459 -KTKSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGL-----NYFQKRFP-DRCFDVGIAEQHAVTFAAGLAS-EG 530 (654)
Q Consensus 459 -~~~~~~~s~~~a~~~aL~~~~~~d~~vvvl~aDlg~s~~l-----~~f~~~fp-~R~id~GIaE~~mvg~AaGlA~-~G 530 (654)
....+..+.+++++++|.++.+.+++++++++|+..++.+ ..|+++|| +||||+||+||+|+++|+|||+ .|
T Consensus 348 ~~~~~~~~a~R~~~g~~L~~la~~~~~~~~~saDl~~s~~~~~~~~~~f~~~~P~~rfi~~GIaEq~mv~~AaGlA~~~G 427 (661)
T PTZ00089 348 YTTNDKAIATRKASENVLNPLFQILPELIGGSADLTPSNLTRPKEANDFTKASPEGRYIRFGVREHAMCAIMNGIAAHGG 427 (661)
T ss_pred hcccCcchHHHHHHHHHHHHHHhhCCCeEEEECCCCcccCcCCcccccccccCCCCCeeeeeecHHHHHHHHHHHHHcCC
Confidence 0001123567788899999999999999999999888765 37999999 8999999999999999999999 78
Q ss_pred CeeEEeehHHHHHhHHHHHHHhhhcCCCCEEEEEecCCc-cCCCCCCCCChhhHHHHhcCCCCEEEecCCHHHHHHHHHH
Q 006251 531 VKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVAT 609 (654)
Q Consensus 531 ~~Pi~~tfa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~-~g~dG~tHq~~edla~~r~iPnl~V~~PsD~~E~~~ll~~ 609 (654)
++||++||++|++|++||| ++.|++++||+|++++.|+ +|+||+|||++||+++||+||||+|++|+|++|+..+|++
T Consensus 428 ~~P~~~tf~~Fl~Ra~dqi-r~~al~~lpV~~v~thdg~~~g~DG~THq~iedia~lR~iPn~~V~~PaD~~E~~~~l~~ 506 (661)
T PTZ00089 428 FIPFGATFLNFYGYALGAV-RLAALSHHPVIYVATHDSIGLGEDGPTHQPVETLALLRATPNLLVIRPADGTETSGAYAL 506 (661)
T ss_pred CeEEEEehHHHHHHHHHHH-HHHHhcCCCeEEEEeCCceecCCCCCCcccHHHHHHHhcCCCcEEEecCCHHHHHHHHHH
Confidence 9999999999999999996 5569999999999999887 7999999999999999999999999999999999999999
Q ss_pred HHhCCCCcEEEEecCCCCCCccCCCCCCCCCcccCceEEecc
Q 006251 610 AAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLETSLDSWPMS 651 (654)
Q Consensus 610 al~~~~~P~~ir~~r~~~~~~~~p~~~~~~~~~iGKa~vi~~ 651 (654)
++...++|+|||++|++.+.. +. ...++..+++.|+++
T Consensus 507 al~~~~gP~~irl~R~~~~~~--~~--~~~~~~~~g~~vl~~ 544 (661)
T PTZ00089 507 ALANAKTPTILCLSRQNTPPL--PG--SSIEGVLKGAYIVVD 544 (661)
T ss_pred HHHcCCCCEEEEecCCCCCCc--CC--CccccccCceEEEec
Confidence 986678999999999975432 11 224556677777764
No 11
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.8e-81 Score=683.77 Aligned_cols=482 Identities=30% Similarity=0.406 Sum_probs=409.8
Q ss_pred CccccCCCCccccCCCCHHHHHHHHHHHHHHHHHHhhc-cCCCCCCCccHHHHHHHHHh-hcC----CC----CcEEEec
Q 006251 140 TPLLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSK-TGGHLSANLGVVELTLALHR-VFN----TP----DDKIIWD 209 (654)
Q Consensus 140 ~~~l~~i~~p~~~~~l~~~~L~~la~~lR~~il~~v~~-~~GH~gsslg~vel~~aL~~-v~~----~p----~Dr~I~s 209 (654)
||.+++++.|.++++|.+.+ ++++++ ++||+++++|.+++...|+. +++ .| +||||||
T Consensus 2 ~~~~~~~~~~~~~n~lri~s------------i~~~~~a~sghp~s~~s~A~~~~vlf~~~mr~~~~~p~~~n~Drfvls 69 (632)
T KOG0523|consen 2 TPSQDSQILKDAVNNLRILS------------IDATSAAKSGHPGSPLSLAPIMHVLFFEVMRYNPADPYWFNRDRFVLS 69 (632)
T ss_pred CchhhhhhhHHHhhhhhhhh------------HHHHHhhhcCCCCCccccchhhhhhhhhheecccCCcCCCCCceEEEe
Confidence 57777777777777755554 445544 68999999999999999975 333 23 7999999
Q ss_pred CCchH---HHHHHHcC--ChHHHHHHHhcCC-CCCCCCCCCCCccccCcccchhhHHHHHHHHHHHHHcCC-CCeEEEEE
Q 006251 210 VGHQA---YVHKILTG--RRSRMNTMRKTSG-LAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGK-NNNVISVI 282 (654)
Q Consensus 210 ~GH~a---Y~~~~l~G--r~~~l~~lrq~gg-l~G~p~~~es~~~~fg~G~lG~~is~AlGmAlA~kl~g~-~~~Vvavi 282 (654)
+||++ |+|++|+| +.++|.+|||.++ .+|||.+ +++++.+++||+|++|++|+|||++.|+.++ +++|||++
T Consensus 70 ~GHa~~llYa~~~l~G~~~~edl~~~Rq~~s~t~ghp~~-~~~~v~v~TG~lgQgis~a~GmA~~~k~~~k~~~rv~~vl 148 (632)
T KOG0523|consen 70 NGHACPLLYAHWHLAGYDREEDLKNFRQIGSDTPGHPEP-ELPGVEVATGPLGQGISNAVGMAYAGKHLGKASNRVYCVL 148 (632)
T ss_pred ccccchHHHHHHHHhccCcHHHHHHHHhhCCCCCCCCcc-cCCCceeccCCccchHHHHHHHHHHHHhhccccceEEEEE
Confidence 99999 99999999 6899999999998 7889884 6899999999999999999999999999998 99999999
Q ss_pred cCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCchhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCC
Q 006251 283 GDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGG 362 (654)
Q Consensus 283 GDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~ 362 (654)
|||+++||++||||++|++++++.+++++||++.+.++.+..+...+|..++-...++++....+.. ++.++|.++.
T Consensus 149 GDG~~~eG~~~EA~s~Ag~l~ldnLVai~D~n~is~~g~t~~~~~~dV~~~r~ea~g~~~~~V~~~d---~d~i~ka~~~ 225 (632)
T KOG0523|consen 149 GDGCLTEGSVWEAMSLAGHLKLDNLVAIYDNNKISIDGATSLGFDEDVYQLRFEAFGWNVIIVDGGD---VDEIRKAIGK 225 (632)
T ss_pred cCchhccchHHHHHhhhhhcccCCEEEEEccccccCCCCCcccccccHHHHHHHHhCceEEEEcCcC---HHHHHHHHhh
Confidence 9999999999999999999987777777777767767666778888887765555555444333221 3444443332
Q ss_pred chHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHHHHhHhCCCCCCEEEEEEeecCCCCChhhcCc-
Q 006251 363 QTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAA- 441 (654)
Q Consensus 363 ~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al~~ak~~~~~gP~lI~v~T~KG~G~~~ae~~~- 441 (654)
.. +.+++...-.++.|+++|+.+++++++|......+.++++++..+- |+++++.+.++++||..+...
T Consensus 226 a~---------~~k~kpt~i~~~t~~g~G~~~ig~~~~Hg~pl~~~~~~~~k~~~~~-P~~~~~v~~~~~~~p~~~~~~~ 295 (632)
T KOG0523|consen 226 AK---------SVKGKPTAIKATTFIGRGSPYIGSESVHGAPLGEDDVERVKSIKGL-PVLIFVVPEKVKLYPEKPVEDA 295 (632)
T ss_pred hh---------hccCCceeeeeeeeeecCccccccccccCCcchhhHHHHHHhhcCC-cceeEEeccccccCCCcccccc
Confidence 21 4577777777889999999999999999999988888888876444 999999999999998766543
Q ss_pred -cccccccCCCCcccccccCCCCchhHHHHHHHHHHHHHhhCCcEEEEecCccCCCChhhHHHhCCCCccccchhHHHHH
Q 006251 442 -DRMHGVVKFDPKTGKQFKTKSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAV 520 (654)
Q Consensus 442 -~~~Hg~~~f~~~tg~~~~~~~~~~s~~~a~~~aL~~~~~~d~~vvvl~aDlg~s~~l~~f~~~fp~R~id~GIaE~~mv 520 (654)
...|.+++++.++..+.+...+...++++|.++|.++.+.+|+++++++|+..|+.++-|+++||+|||++||+||+|+
T Consensus 296 ~~~~~~i~~~~~~~~p~yk~~Dk~~Atrk~~~~aL~~l~~~~~~vI~~~ad~~~st~td~~~~~~p~R~i~~giaEq~mv 375 (632)
T KOG0523|consen 296 RAISVRIPKIWEKSLPTYKVGDKAVATRKAFGEALAALAEADPRVIGGSADLKNSTLTDFFPKRFPERFIECGIAEQNMV 375 (632)
T ss_pred cccccCcCccccccCCccccCChhhhHHHHHHHHHHHHhhcCcCeEEEecccCCCchhhhccccCccceEEEeeehhhhH
Confidence 4678888888888888888888899999999999999999999999999999999889999999999999999999999
Q ss_pred HHHHHHHhcCC-eeEEeehHHHHHhHHHHHHHhhhcCCCCEEEEEecCCc-cCCCCCCCCChhhHHHHhcCCCCEEEecC
Q 006251 521 TFAAGLASEGV-KPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPS 598 (654)
Q Consensus 521 g~AaGlA~~G~-~Pi~~tfa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~-~g~dG~tHq~~edla~~r~iPnl~V~~Ps 598 (654)
++|+|+|++|+ +|||.||+.|++||||||++. +..+.+++++++|.|+ +|+||||||++||+++||+||||+|++|+
T Consensus 376 ~ia~G~a~~g~~~Pf~~tf~~F~trA~dqvr~~-a~s~~~v~~v~th~~i~~GeDGPth~~iedlA~frsiPn~~v~~Pa 454 (632)
T KOG0523|consen 376 GIANGIACRGRTIPFCGTFAAFFTRAFDQVRMG-ALSQANVIYVATHDSIGLGEDGPTHQPIEDLAMFRSIPNMIVFRPA 454 (632)
T ss_pred HhhhchhcCCCccchhHHHHHHHHHhhhheeeh-hhccCCcEEEEEeccccccCCCcccccHHHHHHHHhCCCceEEecC
Confidence 99999999998 999999999999999998765 6788889999988877 79999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCcEEEEecCCCCCCccCCCCCCCCCcccCceE-EecccC
Q 006251 599 DEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLETSLDS-WPMSMK 653 (654)
Q Consensus 599 D~~E~~~ll~~al~~~~~P~~ir~~r~~~~~~~~p~~~~~~~~~iGKa~-vi~~~~ 653 (654)
|++|+..+++.|+..++.|++++++|++.+. ++ ....+++||++ |++++.
T Consensus 455 D~~et~~av~~Aa~~~~~p~i~~~~r~~~~~--~~---~~~~~~igkg~~vl~~~~ 505 (632)
T KOG0523|consen 455 DGNETENAVATAANTKGTPSIRTLSRQNLPI--YN---NTEIEEIGKGKYVLQEVE 505 (632)
T ss_pred chHHHHHHHHHHHhcCCCeeEEEecCccccc--cC---CCchhhhccccEEEecCC
Confidence 9999999999999888889999999998653 32 23579999999 666653
No 12
>PLN02790 transketolase
Probab=100.00 E-value=3.8e-78 Score=694.16 Aligned_cols=423 Identities=23% Similarity=0.347 Sum_probs=355.0
Q ss_pred HHHHHHHHhhc-cCCCCCCCccHHHHHHHHHhh---cCC------CCcEEEecCCchH---HHHHHHcCCh----HHHHH
Q 006251 167 LRADIVNSVSK-TGGHLSANLGVVELTLALHRV---FNT------PDDKIIWDVGHQA---YVHKILTGRR----SRMNT 229 (654)
Q Consensus 167 lR~~il~~v~~-~~GH~gsslg~vel~~aL~~v---~~~------p~Dr~I~s~GH~a---Y~~~~l~Gr~----~~l~~ 229 (654)
||.++++|+.+ ++||+|++||++|++++||+. |+. ++||||||+||++ |+|++++|+. ++|.+
T Consensus 1 iR~~~~~~~~~a~~GH~g~~ls~~ei~~~L~~~~~~~~~~~p~~~~rDrfvls~GH~~~~lYa~l~~~G~~~~~~~~l~~ 80 (654)
T PLN02790 1 IRFLAIDAVNKANSGHPGLPMGCAPMGHVLYDEVMKYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQMEDLKQ 80 (654)
T ss_pred ChHHHHHHHHhcCCCcCCchhhHHHHHHHHHHhhcccCCCCCCCCCCCEEEEeCcchHHHHHHHHHHcCCCCCCHHHHHH
Confidence 69999999966 899999999999999999975 442 4899999999999 9999999985 78999
Q ss_pred HHhcCC-CCCCCCCCCCCccccCcccchhhHHHHHHHHHHHHHc-----CC-----CCeEEEEEcCCCcccchHHHHHHH
Q 006251 230 MRKTSG-LAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDIL-----GK-----NNNVISVIGDGAMTAGQAYEAMNN 298 (654)
Q Consensus 230 lrq~gg-l~G~p~~~es~~~~fg~G~lG~~is~AlGmAlA~kl~-----g~-----~~~VvaviGDGal~eG~~~EAln~ 298 (654)
|||.++ ++|||++.+++++.+++|++|+++|+|+|||+|.|++ ++ +++|||++|||+++||++|||+|+
T Consensus 81 ~r~~~s~~~ghp~~~~~pgi~~~tG~lG~gl~~A~G~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~ 160 (654)
T PLN02790 81 FRQWGSRTPGHPENFETPGIEVTTGPLGQGIANAVGLALAEKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASL 160 (654)
T ss_pred hccCCCCCCCCCCCCCCCCccccCCchhchHHHHHHHHHHHHHHHHHhCCCcccccCCEEEEEECcCcccchHHHHHHHH
Confidence 999988 6799999899999999999999999999999999953 42 689999999999999999999999
Q ss_pred HhhcCC-CEEEEEECCCCCcccccccCCCCCchhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhh
Q 006251 299 AGFLDA-NLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARG 377 (654)
Q Consensus 299 A~~~~l-nLi~Il~dN~~~s~pt~~~~g~~~~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~ 377 (654)
|+.+++ ||++|+|||++++ ++++... ..+++.++
T Consensus 161 A~~~~L~nli~i~d~N~~~i------~~~~~~~--------------------------------~~~~~~~~------- 195 (654)
T PLN02790 161 AGHWGLGKLIVLYDDNHISI------DGDTEIA--------------------------------FTEDVDKR------- 195 (654)
T ss_pred HHHhCCCCEEEEEecCCccc------cCCcccc--------------------------------cchhHHHH-------
Confidence 999986 5999999999643 2222100 01233333
Q ss_pred ccCCChhhhhhhcCCeEEeecCC--CCHHHHHHHHHHhHhCCCCCCEEEEEEeecCCCCChhhcCcccccccc-------
Q 006251 378 LISASGSTFFEELGLYYIGPVDG--HNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVV------- 448 (654)
Q Consensus 378 ~~~~~~~~lfea~G~~~ig~vDG--hDi~~L~~al~~ak~~~~~gP~lI~v~T~KG~G~~~ae~~~~~~Hg~~------- 448 (654)
|++|||++++ ||| ||+++|.++++++++. .++|++||++|+||+|++++|+ +.+||+.+
T Consensus 196 ---------f~a~G~~~~~-vdgg~hd~~~l~~a~~~a~~~-~~~P~lI~~~T~kG~G~~~~e~-~~~~H~~~~~~~~~~ 263 (654)
T PLN02790 196 ---------YEALGWHTIW-VKNGNTDYDEIRAAIKEAKAV-TDKPTLIKVTTTIGYGSPNKAN-SYSVHGAALGEKEVD 263 (654)
T ss_pred ---------HHHcCCeEEE-ECCCCCCHHHHHHHHHHHHhc-CCCeEEEEEEEeecCCCccccC-CCCcCCCCCCHHHHH
Confidence 9999999995 555 8999999999999863 3789999999999999998665 56899876
Q ss_pred -----------CCCCcc-ccc-----------c------------cC-----------------------------CCCc
Q 006251 449 -----------KFDPKT-GKQ-----------F------------KT-----------------------------KSPT 464 (654)
Q Consensus 449 -----------~f~~~t-g~~-----------~------------~~-----------------------------~~~~ 464 (654)
+|+..+ ... . .. +.+.
T Consensus 264 ~~~~~l~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (654)
T PLN02790 264 ATRKNLGWPYEPFHVPEDVKSHWSKHTKEGAALEAEWNAKFAEYKKKYPEEAAELKSLISGELPSGWEKALPTFTPEDPA 343 (654)
T ss_pred HHHHHhCCCCCCCcCCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhCHHHHHHHHHHhccCCchhhhhhhhhhcccCcc
Confidence 354331 100 0 00 0112
Q ss_pred hhHHHHHHHHHHHHHhhCCcEEEEecCccCCCC-----hhhHHHh-CCCCccccchhHHHHHHHHHHHHhc--CCeeEEe
Q 006251 465 LTYTQYFAESLIKEAETDDKIVAIHAAMGGGTG-----LNYFQKR-FPDRCFDVGIAEQHAVTFAAGLASE--GVKPFCA 536 (654)
Q Consensus 465 ~s~~~a~~~aL~~~~~~d~~vvvl~aDlg~s~~-----l~~f~~~-fp~R~id~GIaE~~mvg~AaGlA~~--G~~Pi~~ 536 (654)
...++++++.|.++.+.++++++.++|+..+++ +..|+++ ||+||||+||+||+|+++|+|||++ |++||++
T Consensus 344 ~a~R~~~~~~l~~i~~~~p~iv~gsaDl~~s~~t~~~~~~~f~~~~~p~Rfi~~GIaEq~mv~~AaGlA~~G~G~~P~~~ 423 (654)
T PLN02790 344 DATRNLSQKCLNALAKVLPGLIGGSADLASSNMTLLKDFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSSGLIPYCA 423 (654)
T ss_pred hHHHHHHHHHHHHHHhhCCCeEEEECCCCcccccccccchhhhhcCCCCCeEEeeechHHHHHHHHHHHhcCCCcEEEEE
Confidence 356778888999999999999999999988765 6789998 5999999999999999999999996 5999999
Q ss_pred ehHHHHHhHHHHHHHhhhcCCCCEEEEEecCCc-cCCCCCCCCChhhHHHHhcCCCCEEEecCCHHHHHHHHHHHHhCCC
Q 006251 537 IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDD 615 (654)
Q Consensus 537 tfa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~-~g~dG~tHq~~edla~~r~iPnl~V~~PsD~~E~~~ll~~al~~~~ 615 (654)
||+.|+.|+++||+ ++|++++||+|+++|.|+ +|+||+|||++||+++||+||||+|++|+|++|+..|+++++...+
T Consensus 424 tf~~F~~~~~~~ir-~~al~~lpV~~v~thdg~~~G~DG~THq~iedla~lR~iPnl~V~~PaD~~E~~~~l~~al~~~~ 502 (654)
T PLN02790 424 TFFVFTDYMRAAMR-LSALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLASLRAMPNILMLRPADGNETAGAYKVAVTNRK 502 (654)
T ss_pred ecHHHHHHHHHHHH-HHHhcCCCeEEEEECCceeecCCCCCcccHHHHHHhcCCCCcEEEeCCCHHHHHHHHHHHHHcCC
Confidence 99999999999984 559999999999999887 7999999999999999999999999999999999999999987678
Q ss_pred CcEEEEecCCCCCCccCCCCCCCCCcccCceEEecc
Q 006251 616 RPSCFRFPRGNGIGAVLPPNNKGTPLETSLDSWPMS 651 (654)
Q Consensus 616 ~P~~ir~~r~~~~~~~~p~~~~~~~~~iGKa~vi~~ 651 (654)
+|+|||++|++.+.. +. .....+++|+ .++++
T Consensus 503 gP~~irl~R~~~~~~--~~-~~~~~~~~G~-~vl~~ 534 (654)
T PLN02790 503 RPTVLALSRQKVPNL--PG-TSIEGVEKGG-YVISD 534 (654)
T ss_pred CCEEEEecCCCCCCC--CC-CcccccccCc-EEEEe
Confidence 999999999975432 11 1125688887 55544
No 13
>PRK12754 transketolase; Reviewed
Probab=100.00 E-value=4.8e-77 Score=681.84 Aligned_cols=432 Identities=22% Similarity=0.312 Sum_probs=362.6
Q ss_pred HHHHHHHHHHHHHHhhc-cCCCCCCCccHHHHHHHHHh-hcC----CC----CcEEEecCCchH---HHHHHHcCC---h
Q 006251 161 EQLAAELRADIVNSVSK-TGGHLSANLGVVELTLALHR-VFN----TP----DDKIIWDVGHQA---YVHKILTGR---R 224 (654)
Q Consensus 161 ~~la~~lR~~il~~v~~-~~GH~gsslg~vel~~aL~~-v~~----~p----~Dr~I~s~GH~a---Y~~~~l~Gr---~ 224 (654)
++++++||.++++|+.+ ++||+|++||+++++.+||. +++ +| |||||+|+||++ |+.+++.|. .
T Consensus 5 ~~~~~~iR~~~~~~~~~a~sGH~G~~ls~a~i~~~Ly~~~l~~~p~~p~w~~RDRfvlS~GH~~~~lYa~l~~~G~~~~~ 84 (663)
T PRK12754 5 KELANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLNHNPQNPSWADRDRFVLSNGHGSMLIYSLLHLTGYDLPM 84 (663)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHhcCCCccCCCCCCCCeEEEeCccHHHHHHHHHHHcCCCCCH
Confidence 56789999999999986 78999999999999999985 343 23 699999999998 999999997 5
Q ss_pred HHHHHHHhcCC-CCCCCCCCCCCccccCcccchhhHHHHHHHHHHHHHcC----------CCCeEEEEEcCCCcccchHH
Q 006251 225 SRMNTMRKTSG-LAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILG----------KNNNVISVIGDGAMTAGQAY 293 (654)
Q Consensus 225 ~~l~~lrq~gg-l~G~p~~~es~~~~fg~G~lG~~is~AlGmAlA~kl~g----------~~~~VvaviGDGal~eG~~~ 293 (654)
++|.+|||.|+ ++|||++...++.++++|++|++++.|+|||+|.|+++ .+++|||++|||+++||.+|
T Consensus 85 e~L~~fr~~gs~~~gHpe~~~~pgve~stG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~ 164 (663)
T PRK12754 85 EELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISH 164 (663)
T ss_pred HHHHHhccCCCCCCCCCCCCCCCCccccCCcccchHHHHHHHHHHHHHhhhccCcccccccCCEEEEEECcchhhchHHH
Confidence 88999999987 89999987789999999999999999999999999886 37899999999999999999
Q ss_pred HHHHHHhhcCCC-EEEEEECCCCCcccccccCCCCCchhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHH
Q 006251 294 EAMNNAGFLDAN-LIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVD 372 (654)
Q Consensus 294 EAln~A~~~~ln-Li~Il~dN~~~s~pt~~~~g~~~~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~ 372 (654)
||+++|+.+++| |++|+|||++++ +++++.+. .+++.+|
T Consensus 165 EA~~~A~~~kL~nLi~ivD~N~~~i------dg~~~~~~--------------------------------~~~~~~r-- 204 (663)
T PRK12754 165 EVCSLAGTLKLGKLIAFYDDNGISI------DGHVEGWF--------------------------------TDDTAMR-- 204 (663)
T ss_pred HHHHHHHHhCCCCEEEEEEcCCCcc------Ccchhhcc--------------------------------CccHHHH--
Confidence 999999999875 899999998642 44332110 1334444
Q ss_pred HHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHHHHhHhCCCCCCEEEEEEeecCCCCChhhcCccccccccC---
Q 006251 373 EYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVVK--- 449 (654)
Q Consensus 373 ~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al~~ak~~~~~gP~lI~v~T~KG~G~~~ae~~~~~~Hg~~~--- 449 (654)
|++|||+++.+|||||+++|.+|++++++. .++|++|+++|.||+|.+++|+. .+|||.+.
T Consensus 205 --------------~~a~Gw~vi~vvDG~D~~ai~~A~~~a~~~-~~~Pt~I~~~T~~g~G~~~~e~~-~~~Hg~~l~~~ 268 (663)
T PRK12754 205 --------------FEAYGWHVIRGIDGHDADSIKRAVEEARAV-TDKPSLLMCKTIIGFGSPNKAGT-HDSHGAPLGDA 268 (663)
T ss_pred --------------HHhcCCeEEeeECCCCHHHHHHHHHHHHhc-CCCCEEEEEEeeeccCccccCCC-ccccCCCCCHH
Confidence 999999999438999999999999998753 47899999999999999988865 67898752
Q ss_pred ----------CCC------cc----------ccc--------------------------ccC-----------------
Q 006251 450 ----------FDP------KT----------GKQ--------------------------FKT----------------- 460 (654)
Q Consensus 450 ----------f~~------~t----------g~~--------------------------~~~----------------- 460 (654)
|+. +. +++ ++.
T Consensus 269 ~~~~~~~~l~~~~~~F~v~~~v~~~~~~~~~~~~~~~~w~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 348 (663)
T PRK12754 269 EIALTREQLGWKYAPFEIPSEIYAQWDAKEAGQAKESAWNEKFAAYAKAYPQEAAEFTRRMKGEMPADFDAKAKEFIAKL 348 (663)
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHhhhchHHHHHHHHHHHHHHHHCHHHHHHHHHHhcCCCchhHHHHHHHHhhhh
Confidence 111 00 100 000
Q ss_pred --CCCchhHHHHHHHHHHHHHhhCCcEEEEecCccCCCC-----hhhHHHhCCCCccccchhHHHHHHHHHHHHh-cCCe
Q 006251 461 --KSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTG-----LNYFQKRFPDRCFDVGIAEQHAVTFAAGLAS-EGVK 532 (654)
Q Consensus 461 --~~~~~s~~~a~~~aL~~~~~~d~~vvvl~aDlg~s~~-----l~~f~~~fp~R~id~GIaE~~mvg~AaGlA~-~G~~ 532 (654)
..+....+++++++|.++++.+++++++++|+++++. +..|+++||+||||+||+||+|+++|+|||+ .|++
T Consensus 349 ~~~~~~~atR~~~~~~L~~la~~~~~lv~~sADl~~s~~~~~~~~~~f~~~~p~r~i~~GIaE~~Mv~iaaGlA~~~G~~ 428 (663)
T PRK12754 349 QANPAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDAAGNYIHYGVREFGMTAIANGIALHGGFL 428 (663)
T ss_pred cccccchHHHHHHHHHHHHHHhhCCCEEEEeCCcccccCccccccccccccCCCCeEeeccchhhHHHHHhhHHhcCCCe
Confidence 0012356688999999999999999999999988876 4789899999999999999999999999999 5899
Q ss_pred eEEeehHHHHHhHHHHHHHhhhcCCCCEEEEEecCCc-cCCCCCCCCChhhHHHHhcCCCCEEEecCCHHHHHHHHHHHH
Q 006251 533 PFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAA 611 (654)
Q Consensus 533 Pi~~tfa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~-~g~dG~tHq~~edla~~r~iPnl~V~~PsD~~E~~~ll~~al 611 (654)
||++||++|+.|++|||++. |++++||+++++|+|+ +|+||+|||++||+++||+||||+|++|+|+.|+..+++.++
T Consensus 429 Pf~~tf~~F~~r~~~qir~~-a~~~l~V~~v~th~gi~~G~DG~THq~iEdla~lR~iPn~~V~~PaD~~E~~~~~~~a~ 507 (663)
T PRK12754 429 PYTSTFLMFVEYARNAVRMA-ALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVESAVAWKYGV 507 (663)
T ss_pred EEEEeeHHHHHHHHHHHHHH-HHcCCCeEEEEECCccccCCCCCCcccHHHHHHHhcCCCcEEecCCCHHHHHHHHHHHH
Confidence 99999999999999999875 9999999999999999 799999999999999999999999999999999999999998
Q ss_pred hCCCCcEEEEecCCCCCCccCCCCCCCCCcccCceEEecc
Q 006251 612 VIDDRPSCFRFPRGNGIGAVLPPNNKGTPLETSLDSWPMS 651 (654)
Q Consensus 612 ~~~~~P~~ir~~r~~~~~~~~p~~~~~~~~~iGKa~vi~~ 651 (654)
...++|+|||++|++.+.. .+.......+..|+ .|+++
T Consensus 508 ~~~~gP~yirl~R~~~p~~-~~~~~~~~~~~~G~-~vl~~ 545 (663)
T PRK12754 508 ERQDGPTALILSRQNLAQQ-ERTEEQLANIARGG-YVLKD 545 (663)
T ss_pred hCCCCCEEEEeCCCCCCCC-CCccchhhhcccCc-EEEEe
Confidence 7668999999999985432 11111113466665 66653
No 14
>PRK05899 transketolase; Reviewed
Probab=100.00 E-value=4.2e-77 Score=684.71 Aligned_cols=435 Identities=25% Similarity=0.369 Sum_probs=368.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhc-cCCCCCCCccHHHHHHHHHh-hcC----C----CCcEEEecCCchH---HHHHHHc
Q 006251 155 LSTEDLEQLAAELRADIVNSVSK-TGGHLSANLGVVELTLALHR-VFN----T----PDDKIIWDVGHQA---YVHKILT 221 (654)
Q Consensus 155 l~~~~L~~la~~lR~~il~~v~~-~~GH~gsslg~vel~~aL~~-v~~----~----p~Dr~I~s~GH~a---Y~~~~l~ 221 (654)
|.+++|+++|+++|+++++++.. ++||+|+++|++|++++||+ +|+ + ++||||+|+||++ |++++++
T Consensus 3 ~~~~~l~~~a~~iR~~~~~~~~~~~~gH~g~~ls~~~i~~~L~~~~l~~~~~~~~~~~~Dr~i~s~GH~~~~~Ya~l~~~ 82 (624)
T PRK05899 3 MDMELLQLLANAIRVLSIDAVQKANSGHPGMPMGAADIAYVLWTRFLRHDPKNPKWPNRDRFVLSAGHGSMLLYSLLHLA 82 (624)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHcCCCCccchHHHHHHHHHHHHHhhcCCCCCCCCCCCCEEEEEChhHHHHHHHHHHHc
Confidence 56889999999999999999965 89999999999999999996 443 2 3799999999999 9999999
Q ss_pred CC---hHHHHHHHhcCC-CCCCCCCCCCCccccCcccchhhHHHHHHHHHHHHHcCC----------CCeEEEEEcCCCc
Q 006251 222 GR---RSRMNTMRKTSG-LAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGK----------NNNVISVIGDGAM 287 (654)
Q Consensus 222 Gr---~~~l~~lrq~gg-l~G~p~~~es~~~~fg~G~lG~~is~AlGmAlA~kl~g~----------~~~VvaviGDGal 287 (654)
|+ +++|.+||++++ ++|||++.+++++.+++|++|+++|+|+|+|+|.++++. +++|||++|||++
T Consensus 83 G~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~G~lG~gl~~AiG~Ala~~~~~~~~~~~~~~~~~~~v~~v~GDG~~ 162 (624)
T PRK05899 83 GYDLSIDDLKNFRQLGSKTPGHPEYGHTPGVETTTGPLGQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGDL 162 (624)
T ss_pred CCCCCHHHHHHhcCCCCCCCCCCCCCCCCCeeeCCcchhhhHHHHHHHHHHHHHhhhhcCCccccCcCCeEEEEECcchh
Confidence 99 889999999988 699999877899999999999999999999999998877 8999999999999
Q ss_pred ccchHHHHHHHHhhcCCC-EEEEEECCCCCcccccccCCCCCchhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHH
Q 006251 288 TAGQAYEAMNNAGFLDAN-LIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHE 366 (654)
Q Consensus 288 ~eG~~~EAln~A~~~~ln-Li~Il~dN~~~s~pt~~~~g~~~~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~ 366 (654)
++|++||||++|+.+++| +++|+|||++.+ ++...... ..+
T Consensus 163 ~~g~~~Eal~~A~~~~L~~li~v~dnN~~~~------~~~~~~~~--------------------------------~~~ 204 (624)
T PRK05899 163 MEGISHEACSLAGHLKLGNLIVIYDDNRISI------DGPTEGWF--------------------------------TED 204 (624)
T ss_pred hchHHHHHHHHHHHhCCCCEEEEEECCCCcc------cccccccc--------------------------------ccc
Confidence 999999999999999865 999999998643 11111000 012
Q ss_pred HHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHHHHhHhCCCCCCEEEEEEeecCCCCChhhcCcccccc
Q 006251 367 VAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHG 446 (654)
Q Consensus 367 ~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al~~ak~~~~~gP~lI~v~T~KG~G~~~ae~~~~~~Hg 446 (654)
+. .+|++|||+++ .|||||+++|.++++++++. ++|++|+++|.||+|++++|+ ..+||+
T Consensus 205 ~~----------------~~~~a~G~~~~-~VdG~d~~~l~~al~~a~~~--~~P~vI~v~t~kg~g~~~~e~-~~~~H~ 264 (624)
T PRK05899 205 VK----------------KRFEAYGWHVI-EVDGHDVEAIDAAIEEAKAS--TKPTLIIAKTIIGKGAPNKEG-THKVHG 264 (624)
T ss_pred HH----------------HHhccCCCeEE-EECCCCHHHHHHHHHHHHhc--CCCEEEEEEeEeccCCccccC-CCcccC
Confidence 22 34999999999 69999999999999999865 689999999999999999984 467998
Q ss_pred ccCCCCc--cc--------ccc--------------c-CC-----------CCchhHHHHHHHHHHHHHhhCCcEEEEec
Q 006251 447 VVKFDPK--TG--------KQF--------------K-TK-----------SPTLTYTQYFAESLIKEAETDDKIVAIHA 490 (654)
Q Consensus 447 ~~~f~~~--tg--------~~~--------------~-~~-----------~~~~s~~~a~~~aL~~~~~~d~~vvvl~a 490 (654)
....+.+ .. +.+ + +. ....+++++|+++|.+++++|++++++++
T Consensus 265 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~l~~~~~~v~vl~~ 344 (624)
T PRK05899 265 APLGAEEIAAAKKELGWDYEPFEVPEEVYAHWRKAKERGAKAEAEWNEKFAGEKVATRKASGKALNALAKALPELVGGSA 344 (624)
T ss_pred CCCCHHHHHHHHHHcCCCcccccCChHHHHHHHHhhhcCchhHHHHHHhhcccchHHHHHHHHHHHHHHhhCCCEEEEeC
Confidence 6532110 00 000 0 00 02234589999999999999999999999
Q ss_pred CccCCCChhhHH------HhCCCCccccchhHHHHHHHHHHHHhcC-CeeEEeehHHHHHhHHHHHHHhhhcCCCCEEEE
Q 006251 491 AMGGGTGLNYFQ------KRFPDRCFDVGIAEQHAVTFAAGLASEG-VKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFA 563 (654)
Q Consensus 491 Dlg~s~~l~~f~------~~fp~R~id~GIaE~~mvg~AaGlA~~G-~~Pi~~tfa~Fl~ra~dQI~~~~a~~~lpV~~v 563 (654)
|+++++++..|. ++||+||||+||+||+|+|+|+|||+.| ++||+++|+.|+.|+++||++. +++++||+++
T Consensus 345 D~~~~~~~~~~~~~~f~~~~~p~R~~d~GIaE~~~vg~A~GlA~~G~~~pv~~t~~~F~~r~~~qir~~-~~~~~pv~~v 423 (624)
T PRK05899 345 DLAGSNNTKIKGSKDFAPEDYSGRYIHYGVREFAMAAIANGLALHGGFIPFGGTFLVFSDYARNAIRLA-ALMKLPVIYV 423 (624)
T ss_pred CCccccCcccccccccCccCCCCCeeeeChhHHHHHHHHHHHHHcCCCeEEEEEcHHHHHHHHHHHHHH-HhcCCCEEEE
Confidence 999888776665 6889999999999999999999999999 9999999999999999999875 8999999999
Q ss_pred EecCCc-cCCCCCCCCChhhHHHHhcCCCCEEEecCCHHHHHHHHHHHHhCCCCcEEEEecCCCCCCccCCCCCCCCCcc
Q 006251 564 MDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLE 642 (654)
Q Consensus 564 ~~~~G~-~g~dG~tHq~~edla~~r~iPnl~V~~PsD~~E~~~ll~~al~~~~~P~~ir~~r~~~~~~~~p~~~~~~~~~ 642 (654)
++++|+ .|.+|+|||++||+++||++|||+|++|+|++|+++++++++..+++|+|||++|+..+. +......+.++
T Consensus 424 ~~~~G~~~g~~G~tHq~~edia~~r~iP~~~V~~P~d~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~--~~~~~~~~~~~ 501 (624)
T PRK05899 424 FTHDSIGVGEDGPTHQPVEQLASLRAIPNLTVIRPADANETAAAWKYALERKDGPSALVLTRQNLPV--LERTAQEEGVA 501 (624)
T ss_pred EECCCcCcCCCCCCcccHHHHHHHHhCCCcEEEeCCCHHHHHHHHHHHHHcCCCCEEEEEeCCCCCC--cCCcccccccc
Confidence 999998 688999999999999999999999999999999999999998654899999999987432 11110226788
Q ss_pred cCceEEecc
Q 006251 643 TSLDSWPMS 651 (654)
Q Consensus 643 iGKa~vi~~ 651 (654)
+|+ .++++
T Consensus 502 ~G~-~~l~~ 509 (624)
T PRK05899 502 KGG-YVLRD 509 (624)
T ss_pred CCc-EEEec
Confidence 897 66654
No 15
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=100.00 E-value=6.1e-75 Score=667.54 Aligned_cols=426 Identities=24% Similarity=0.363 Sum_probs=357.8
Q ss_pred HHHHHHHHHHHHHhhc-cCCCCCCCccHHHHHHHHHh-hcC----CC----CcEEEecCCchH---HHHHHHcCC---hH
Q 006251 162 QLAAELRADIVNSVSK-TGGHLSANLGVVELTLALHR-VFN----TP----DDKIIWDVGHQA---YVHKILTGR---RS 225 (654)
Q Consensus 162 ~la~~lR~~il~~v~~-~~GH~gsslg~vel~~aL~~-v~~----~p----~Dr~I~s~GH~a---Y~~~~l~Gr---~~ 225 (654)
++|+++|+++++|+.+ ++||+|+++|+++++++||. +++ +| |||||+|+||++ |+.+++.|. .+
T Consensus 2 ~~~~~iR~~~~~~~~~a~~GH~g~~ls~a~i~~~Ly~~~l~~~p~~p~~~~rDrfvlS~GH~~~~lYa~l~~~G~~~~~e 81 (653)
T TIGR00232 2 KLANAIRHLAVDAIQKAKSGHPGAPLGAAPIAEVLWTKFLKFNPTNPKWINRDRFVLSNGHGSMLLYSLLHLTGYDLSIE 81 (653)
T ss_pred hHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCeEEEECccHHHHHHHHHHHcCCCCCHH
Confidence 4688999999999986 78999999999999999985 443 23 699999999998 999999997 37
Q ss_pred HHHHHHhcCC-CCCCCCCCCCCccccCcccchhhHHHHHHHHHHHHHcC----------CCCeEEEEEcCCCcccchHHH
Q 006251 226 RMNTMRKTSG-LAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILG----------KNNNVISVIGDGAMTAGQAYE 294 (654)
Q Consensus 226 ~l~~lrq~gg-l~G~p~~~es~~~~fg~G~lG~~is~AlGmAlA~kl~g----------~~~~VvaviGDGal~eG~~~E 294 (654)
+|.+||+.++ ++|||++..+++..+++|++|+++++|+|||+|.|+++ .+++|||++|||+++||.+||
T Consensus 82 ~L~~fr~~~s~~~ghp~~~~~~gi~~~tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~EG~~~E 161 (653)
T TIGR00232 82 DLKQFRQLHSKTPGHPEFGHTAGVEATTGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCLQEGISYE 161 (653)
T ss_pred HHHhcccCCCCCCCCCCCCCCCCeeeCCcchhccHHHHHHHHHHHHHHhhhccCCccCCcCCEEEEEEccccccccHHHH
Confidence 8999999987 89999987789999999999999999999999999863 478999999999999999999
Q ss_pred HHHHHhhcCCC-EEEEEECCCCCcccccccCCCCCchhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHH
Q 006251 295 AMNNAGFLDAN-LIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDE 373 (654)
Q Consensus 295 Aln~A~~~~ln-Li~Il~dN~~~s~pt~~~~g~~~~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~ 373 (654)
|+++|+.+++| |++|+|||++++ ++++..+. .+++.++
T Consensus 162 A~~~A~~~~L~nLi~ivd~N~~~i------~~~~~~~~--------------------------------~~~~~~~--- 200 (653)
T TIGR00232 162 VASLAGHLKLGKLIVLYDSNRISI------DGAVDGSF--------------------------------TEDVAKR--- 200 (653)
T ss_pred HHHHHHHhCCCcEEEEEeCCCeee------cccccccc--------------------------------CccHHHH---
Confidence 99999999865 899999998542 33322110 0233333
Q ss_pred HhhhccCCChhhhhhhcCCeEEeec-CCCCHHHHHHHHHHhHhCCCCCCEEEEEEeecCCCCChhhcCccccccccC---
Q 006251 374 YARGLISASGSTFFEELGLYYIGPV-DGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVVK--- 449 (654)
Q Consensus 374 ~~r~~~~~~~~~lfea~G~~~ig~v-DGhDi~~L~~al~~ak~~~~~gP~lI~v~T~KG~G~~~ae~~~~~~Hg~~~--- 449 (654)
|++|||+++ .| ||||+++|.++++++++. .++|++|+++|+||+|++++|+. .+||+.+.
T Consensus 201 -------------~~a~Gw~~~-~v~DG~D~~ai~~A~~~a~~~-~~~P~~I~~~T~~g~G~~~~e~~-~~~H~~~~~~~ 264 (653)
T TIGR00232 201 -------------FEAYGWEVL-EVEDGHDLAAIDAAIEEAKAS-KDKPTLIEVTTTIGFGSPNKAGT-HGVHGAPLGDE 264 (653)
T ss_pred -------------HHhcCCcEE-EeCCCCCHHHHHHHHHHHHhC-CCCCEEEEEEeeecccCcccCCC-CcccCCCCCHH
Confidence 999999999 67 999999999999998864 24899999999999999998865 57888751
Q ss_pred ---------------CCCc-------------cccc--------------------------ccC---------------
Q 006251 450 ---------------FDPK-------------TGKQ--------------------------FKT--------------- 460 (654)
Q Consensus 450 ---------------f~~~-------------tg~~--------------------------~~~--------------- 460 (654)
|+.. .+++ ++.
T Consensus 265 ~~~~~~~~l~~~~~~f~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~ 344 (653)
T TIGR00232 265 DVKLTKKNLGWNYNPFEVPQEVYDHFQKTVKERGAKAEQEWNELFAAYKKKYPELAAEFTRRLSGELPADWDKKLPEFKA 344 (653)
T ss_pred HHHHHHHHhCCCCCCccCCHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHCHHHHHHHHHHHhccCchhhhhhhhhhhc
Confidence 1100 0100 000
Q ss_pred CCCchhHHHHHHHHHHHHHhhCCcEEEEecCccCCCChhh-----HHHhCCCCccccchhHHHHHHHHHHHHh-cCCeeE
Q 006251 461 KSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGLNY-----FQKRFPDRCFDVGIAEQHAVTFAAGLAS-EGVKPF 534 (654)
Q Consensus 461 ~~~~~s~~~a~~~aL~~~~~~d~~vvvl~aDlg~s~~l~~-----f~~~fp~R~id~GIaE~~mvg~AaGlA~-~G~~Pi 534 (654)
.....+.+++++++|.++++++++++++++|++++++++. |+++||+||||+||+||+|+++|+|||+ .|++||
T Consensus 345 ~~~~~atR~~~g~~L~~la~~~p~iv~lsaDl~~s~~~~~~~~~~f~~~~p~rfi~~GIaEq~mv~~AaGlA~~gG~~p~ 424 (653)
T TIGR00232 345 KLQALATRKYSQNVLNAIANVLPELLGGSADLAPSNLTKWKGSGDLHENPLGNYIHYGVREFAMGAIMNGIALHGGFKPY 424 (653)
T ss_pred cCcchHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCcccccccchhhcCCCCeEeecccHHHHHHHHHHHHHcCCCeEE
Confidence 0112356788999999999999999999999998887754 8899999999999999999999999999 679999
Q ss_pred EeehHHHHHhHHHHHHHhhhcCCCCEEEEEecCCc-cCCCCCCCCChhhHHHHhcCCCCEEEecCCHHHHHHHHHHHHhC
Q 006251 535 CAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVI 613 (654)
Q Consensus 535 ~~tfa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~-~g~dG~tHq~~edla~~r~iPnl~V~~PsD~~E~~~ll~~al~~ 613 (654)
++||+.|++|+++||+.. |++++||+++++|+|+ +|+||+|||++||+++||+||||+|++|+|++|+++|+++++..
T Consensus 425 ~~tf~~F~~r~~~~ir~~-a~~~lpV~~v~th~g~~~G~dG~THq~iedia~lr~iPn~~v~~PaD~~E~~~~~~~a~~~ 503 (653)
T TIGR00232 425 GGTFLMFVDYARPAIRLA-ALMKLPVIYVYTHDSIGVGEDGPTHQPIEQLASLRAIPNLSVWRPCDGNETAAAWKYALES 503 (653)
T ss_pred EEEhHHHHHHHHHHHHHH-HhcCCCEEEEEeCCccCCCCCCcccCCHHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhc
Confidence 999999999999998655 9999999999999888 79999999999999999999999999999999999999999866
Q ss_pred CCCcEEEEecCCCCCCccCCCCCCCCCcccCceEEe
Q 006251 614 DDRPSCFRFPRGNGIGAVLPPNNKGTPLETSLDSWP 649 (654)
Q Consensus 614 ~~~P~~ir~~r~~~~~~~~p~~~~~~~~~iGKa~vi 649 (654)
.++|+|||++|++.+.. .. ....+++.|+ .++
T Consensus 504 ~~gP~~irl~r~~~~~~--~~-~~~~~~~~G~-~vl 535 (653)
T TIGR00232 504 QDGPTALILSRQNLPQL--EE-SSLEKVLKGG-YVL 535 (653)
T ss_pred CCCcEEEEEcCCccCCC--Cc-ccccccCCCc-EEE
Confidence 78999999999975431 11 1114677776 555
No 16
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.9e-71 Score=606.47 Aligned_cols=434 Identities=24% Similarity=0.358 Sum_probs=366.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-cCCCCCCCccHHHHHHHHHhh---cC--CC----CcEEEecCCchH---HHHHHHcCC
Q 006251 157 TEDLEQLAAELRADIVNSVSK-TGGHLSANLGVVELTLALHRV---FN--TP----DDKIIWDVGHQA---YVHKILTGR 223 (654)
Q Consensus 157 ~~~L~~la~~lR~~il~~v~~-~~GH~gsslg~vel~~aL~~v---~~--~p----~Dr~I~s~GH~a---Y~~~~l~Gr 223 (654)
.+..+++++.||-..++++.+ ++||+|.+||++++...||.. +| +| |||||+|.||++ |++++|+|.
T Consensus 3 ~~~~~~~~naiR~Ls~davqkAnSGHPG~pmG~A~ia~~L~~~~l~~nP~nP~W~nRDRFVLSaGHgSmllYsllhl~Gy 82 (663)
T COG0021 3 MKIDKLLANAIRFLSMDAVQKANSGHPGAPMGAADIAYVLWTRFLKHNPDNPKWINRDRFVLSAGHGSMLLYSLLHLTGY 82 (663)
T ss_pred chHHHHHHHHHHHHHHHHHHhccCCCCCCCccHHHHHHHHHHHHhcCCCCCCCCCCCccEEecCCchhHHHHHHHHHccC
Confidence 456789999999999999987 899999999999999999753 32 44 899999999998 999999998
Q ss_pred ---hHHHHHHHhcCC-CCCCCCCCCCCccccCcccchhhHHHHHHHHHHHHHcCC----------CCeEEEEEcCCCccc
Q 006251 224 ---RSRMNTMRKTSG-LAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGK----------NNNVISVIGDGAMTA 289 (654)
Q Consensus 224 ---~~~l~~lrq~gg-l~G~p~~~es~~~~fg~G~lG~~is~AlGmAlA~kl~g~----------~~~VvaviGDGal~e 289 (654)
.++|..|||+++ .+|||+...+++++..||.+||||+.|+|||+|.+++.. |+++||++|||+++|
T Consensus 83 ~ls~edLk~FRQ~~SkTpGHPE~~~t~GVe~TTGPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl~GDGclmE 162 (663)
T COG0021 83 DLSLEDLKNFRQLGSKTPGHPEYGHTPGVEATTGPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGCLME 162 (663)
T ss_pred CCCHHHHHhhccCCCCCCCCCCcCCCCCeEeccCccchhHHHHHHHHHHHHHHHhhhCCCCCccccceEEEEecCchHhc
Confidence 488999999998 799999888999999999999999999999999997542 579999999999999
Q ss_pred chHHHHHHHHhhcC-CCEEEEEECCCCCcccccccCCCCCchhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHH
Q 006251 290 GQAYEAMNNAGFLD-ANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVA 368 (654)
Q Consensus 290 G~~~EAln~A~~~~-lnLi~Il~dN~~~s~pt~~~~g~~~~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~ 368 (654)
|+.+||..+|++++ .+||+|.|+|+-+ +||.+.... .+++.
T Consensus 163 Gvs~EA~slAG~l~L~kLIvlyD~N~Is------iDG~~~~~f--------------------------------~ed~~ 204 (663)
T COG0021 163 GVSHEAASLAGHLKLGKLIVLYDSNDIS------IDGDTSLSF--------------------------------TEDVA 204 (663)
T ss_pred ccHHHHHHHHhhcCCCcEEEEEeCCCce------eccCccccc--------------------------------chhHH
Confidence 99999999999996 5788888888843 466654221 14555
Q ss_pred HHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHHHHhHhCCCCCCEEEEEEeecCCCCChhhcCcccccccc
Q 006251 369 AKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVV 448 (654)
Q Consensus 369 ~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al~~ak~~~~~gP~lI~v~T~KG~G~~~ae~~~~~~Hg~~ 448 (654)
++ ||++||+++..+||||+++|.+|+++||+. ..+|++|+|+|+.|+|.+..|+ ..++||.+
T Consensus 205 ~R----------------feAyGW~vi~~~DG~D~e~I~~Ai~~Ak~~-~dkPtlI~~kTiIG~Gsp~keg-t~~~HGap 266 (663)
T COG0021 205 KR----------------FEAYGWNVIRVIDGHDLEAIDKAIEEAKAS-TDKPTLIIVKTIIGKGSPNKEG-THKVHGAP 266 (663)
T ss_pred HH----------------HHhcCCeEEEecCCCCHHHHHHHHHHHHhc-CCCCeEEEEEeeeecCCCCcCC-CccccCCC
Confidence 44 999999999999999999999999999975 4799999999999999998775 46899977
Q ss_pred C-------------CCC------c-----------cccc--------------ccC------------------------
Q 006251 449 K-------------FDP------K-----------TGKQ--------------FKT------------------------ 460 (654)
Q Consensus 449 ~-------------f~~------~-----------tg~~--------------~~~------------------------ 460 (654)
. |++ + .++. ..|
T Consensus 267 Lg~~ev~~~k~~lgw~~~~F~vp~ev~~~~~~~~~~g~~~~~~W~~~~~~y~~~~Pe~~~~~~r~~~~~~p~~~~~~~~~ 346 (663)
T COG0021 267 LGEEEVAAAKKALGWEPEPFEVPEEVYAAFRAVEERGAKAEAAWNELFAAYKKKYPELAAEFERRLNGELPANWAAFLPK 346 (663)
T ss_pred CCHHHHHHHHHHhCCCCCceecCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhChHHHHHHHHHhcccCchhHHHhhhh
Confidence 3 221 0 1100 000
Q ss_pred ---CCCchhHHHHHHHHHHHHHhhCCcEEEEecCccCCCCh-----hhHH-HhCCCCccccchhHHHHHHHHHHHHhcC-
Q 006251 461 ---KSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGL-----NYFQ-KRFPDRCFDVGIAEQHAVTFAAGLASEG- 530 (654)
Q Consensus 461 ---~~~~~s~~~a~~~aL~~~~~~d~~vvvl~aDlg~s~~l-----~~f~-~~fp~R~id~GIaE~~mvg~AaGlA~~G- 530 (654)
......-|++.+++|..+.+..|+++..++|+.+|+.+ ..|. +.|.+|+|.+||+|++|.++++|||++|
T Consensus 347 ~~~~~~~~ATR~as~~~L~~l~~~~p~l~GGSADLa~Sn~T~~~~~~~~~~~~~~gr~i~~GVREf~M~AimNGialhGg 426 (663)
T COG0021 347 FEANGKSIATRKASGKALNALAKKLPELIGGSADLAPSNLTKISGSGDFSPENYAGRYIHFGVREFAMAAIMNGIALHGG 426 (663)
T ss_pred hcccccccchHHHHHHHHHHHHhhCccccccCcccccCccccccccCCCCCCCCCCCeeEEeeHHHHHHHHHHhHHHhcC
Confidence 01124557788899999999999999999999999876 2344 5678999999999999999999999995
Q ss_pred CeeEEeehHHHHHhHHHHHHHhhhcCCCCEEEEEecCCc-cCCCCCCCCChhhHHHHhcCCCCEEEecCCHHHHHHHHHH
Q 006251 531 VKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVAT 609 (654)
Q Consensus 531 ~~Pi~~tfa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~-~g~dG~tHq~~edla~~r~iPnl~V~~PsD~~E~~~ll~~ 609 (654)
++||..||..|..++..+| +.+|+|++|+++|.+|.++ +|+||||||++|+++.+|+|||+.|++|||++|+..+|+.
T Consensus 427 ~~pyggTFlvFsdY~r~Ai-RlaALm~l~~~~V~THDSIgvGEDGPTHqPiEqLa~LRaiPN~~V~RPaD~~Et~~aw~~ 505 (663)
T COG0021 427 FIPYGGTFLVFSDYARPAV-RLAALMGLPVIYVFTHDSIGVGEDGPTHQPVEQLASLRAIPNLSVIRPADANETAAAWKY 505 (663)
T ss_pred ceeecceehhhHhhhhHHH-HHHHhcCCCeEEEEecCceecCCCCCCCCcHHHHHHhhccCCceeEecCChHHHHHHHHH
Confidence 6999999999999999996 5688999999999999998 8999999999999999999999999999999999999999
Q ss_pred HHhCCCCcEEEEecCCCCCCccCCCCCCCCCcccCceEEecc
Q 006251 610 AAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLETSLDSWPMS 651 (654)
Q Consensus 610 al~~~~~P~~ir~~r~~~~~~~~p~~~~~~~~~iGKa~vi~~ 651 (654)
|+.+.++|++++++||+.+.. +. .........+.|+++
T Consensus 506 Al~~~~gPt~LiltRQnlp~l--~~--t~~~~~~kGaYvl~~ 543 (663)
T COG0021 506 ALERKDGPTALILTRQNLPVL--ER--TDLEGVAKGAYVLKD 543 (663)
T ss_pred HHhcCCCCeEEEEecCCCCcc--CC--CccccccCccEEEee
Confidence 998889999999999996532 21 113444455556554
No 17
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=100.00 E-value=3.6e-71 Score=560.42 Aligned_cols=270 Identities=60% Similarity=0.976 Sum_probs=199.0
Q ss_pred ccCCCCccccCCCCHHHHHHHHHHHHHHHHHHhhccCCCCCCCccHHHHHHHHHhhcCCCCcEEEecCCchHHHHHHHcC
Q 006251 143 LDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILTG 222 (654)
Q Consensus 143 l~~i~~p~~~~~l~~~~L~~la~~lR~~il~~v~~~~GH~gsslg~vel~~aL~~v~~~p~Dr~I~s~GH~aY~~~~l~G 222 (654)
||+|+.|.|+|+|+.+||++||+|||+.|++.++++|||++++||+||+++|||++||.|+|+||||+|||+|+||+|||
T Consensus 1 L~~I~~p~dlk~ls~~eL~~La~eiR~~ii~~vs~~GGHl~snLGvVELTiALH~vFd~p~DkivwDvGHQ~Y~HKiLTG 80 (270)
T PF13292_consen 1 LDKINSPEDLKKLSIEELEQLAQEIREFIIETVSKTGGHLASNLGVVELTIALHYVFDSPKDKIVWDVGHQAYVHKILTG 80 (270)
T ss_dssp GGG-SSHHHHTTS-GGGHHHHHHHHHHHHHHHCTCCCSTHHHHHCCHHHHHHHHHHS-TTTSEEEESSSTT-HHHHHCTT
T ss_pred CCCCCCHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccHHHHHHHHHHHhCCCCCeEEEecccccchhhhccC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhc
Q 006251 223 RRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFL 302 (654)
Q Consensus 223 r~~~l~~lrq~ggl~G~p~~~es~~~~fg~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~ 302 (654)
|++.|.|+||.||++|||+|.||+||.|++||+|++||+|+|||.|+++++++++||||||||+|+.||+|||||+|+..
T Consensus 81 R~~~f~TlRq~gGlSGF~~r~ES~~D~f~~GHsstsiSaa~Gma~ar~l~~~~~~vVaVIGDGalt~Gma~EALN~~g~~ 160 (270)
T PF13292_consen 81 RRDRFHTLRQYGGLSGFPKRSESEYDAFGAGHSSTSISAALGMAVARDLKGEDRKVVAVIGDGALTGGMAFEALNNAGHL 160 (270)
T ss_dssp TCCCGGGTTSTTS--SS--TTT-TT--S--SSSS-HHHHHHHHHHHHHHHTS---EEEEEETTGGGSHHHHHHHHHHHHH
T ss_pred cHHHhchhhhcCCcCCCCCcccCCCCcccCCccHhHHHHHHHHHHHHHhcCCCCcEEEEECCcchhHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEECCCCCcccccccCCCCCchhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCC
Q 006251 303 DANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISAS 382 (654)
Q Consensus 303 ~lnLi~Il~dN~~~s~pt~~~~g~~~~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~ 382 (654)
+.|++||+|||+|++ ++++|+++++|++++.++.|+.+++.++.+.+.+ +++.+.++|+++..+++ .+
T Consensus 161 ~~~liVILNDN~mSI---------s~nvGals~~L~~l~~~~~y~~~k~~~~~~l~~~-~~~~~~~~r~~~s~K~~-~~- 228 (270)
T PF13292_consen 161 KSNLIVILNDNEMSI---------SPNVGALSKYLSKLRSSPTYNKLKEDVKSLLKKI-PPIEEFAKRIKESLKGF-SP- 228 (270)
T ss_dssp T-SEEEEEEE-SBSS---------SB--SSHCCC----------------------------------------------
T ss_pred CCCEEEEEeCCCccc---------CCCcchHHHHHHhccchhHHHHHHHHHHHHHHhh-hHHHHHHHHHhhhhhhh-hH-
Confidence 999999999999976 4579999999999999999999999999999988 77888899999998888 32
Q ss_pred hhhhhhhcCCeEEeecCCCCHHHHHHHHHHhHhCCCCCCEEEEEEe
Q 006251 383 GSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVT 428 (654)
Q Consensus 383 ~~~lfea~G~~~ig~vDGhDi~~L~~al~~ak~~~~~gP~lI~v~T 428 (654)
++||++||+|+||+||||+++|.++|+.+|+. ++|++||+.|
T Consensus 229 --~lFe~LG~~Y~GPiDGHdl~~Li~~l~~~K~~--~gPvllHV~T 270 (270)
T PF13292_consen 229 --NLFEELGFDYIGPIDGHDLEELIEVLENAKDI--DGPVLLHVIT 270 (270)
T ss_dssp --CCCHHCT-EEEEEEETT-HHHHHHHHHHHCCS--SSEEEEEEE-
T ss_pred --HHHHHcCCeEEeccCCCCHHHHHHHHHHHhcC--CCCEEEEEeC
Confidence 89999999999999999999999999999986 8999999987
No 18
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=100.00 E-value=1.1e-66 Score=602.80 Aligned_cols=460 Identities=23% Similarity=0.278 Sum_probs=363.8
Q ss_pred ccCCCCCCCCccccCCCCccc---cCCCCHHHHHHHHHHHHHHHHHHhhc-c------CCCCCCCccHHHHHHHHHh-hc
Q 006251 131 IDFSEEKPPTPLLDTINYPIH---MKNLSTEDLEQLAAELRADIVNSVSK-T------GGHLSANLGVVELTLALHR-VF 199 (654)
Q Consensus 131 ~~~~~~~~~~~~l~~i~~p~~---~~~l~~~~L~~la~~lR~~il~~v~~-~------~GH~gsslg~vel~~aL~~-v~ 199 (654)
+..+ ...+||+++||..-.. .-++ +-++++++.||+.++.|+.+ + +||+|+++|+++++.+||. +|
T Consensus 46 ~~~~-~~~~t~y~nti~~~~~~~~pgd~--~~~~~~a~~iR~~a~~mv~~A~~~~~~~gGH~gs~lS~a~i~~vLy~~~l 122 (889)
T TIGR03186 46 LAPP-AAGATPYVNTIAVDQEPPYPGDL--QLEERLAAILRWNALAMVVRANRAYGELGGHIASYASAADLFEVGFNHFF 122 (889)
T ss_pred CCCC-CCCCCCCccCCCCcCCCCCCCCH--HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcCcHHHHHHHHHHHHHhC
Confidence 3444 3455899999975433 3333 33578899999999999976 4 6999999999999999985 45
Q ss_pred CCC-----CcEEEecCCchH---HHHHHHcCC--hHHHHHHHhc--C-CCCCCCCCCC-CCccccCcccchhhHHHHHHH
Q 006251 200 NTP-----DDKIIWDVGHQA---YVHKILTGR--RSRMNTMRKT--S-GLAGFPKREE-SVHDAFGAGHSSTSISAGLGM 265 (654)
Q Consensus 200 ~~p-----~Dr~I~s~GH~a---Y~~~~l~Gr--~~~l~~lrq~--g-gl~G~p~~~e-s~~~~fg~G~lG~~is~AlGm 265 (654)
+.| +| +|+|+||.+ |+.+.+.|+ .++|.+|||. + ++++||++.. +.+..|.||++|+|+++|+||
T Consensus 123 r~~~~~~~rD-~VlskGHasp~lYA~l~l~G~l~~e~L~~fRq~~~~~gl~~~phP~~~p~~ve~sTGSLGqGl~~AvG~ 201 (889)
T TIGR03186 123 RAAGDASGGD-LVYFQPHSAPGVYARAFLEGFLSDAQLAHYRQEIAGPGLCSYPHPWLMPDFWQFPTGSMGIGPINAIYQ 201 (889)
T ss_pred CCCCCCCCCC-EEEECCchHHHHHHHHHHcCCCCHHHHHHhcCCCCCCCCCCCCCcccCCCCeEcCCCCchHHHHHHHHH
Confidence 522 46 799999998 899999997 6899999997 4 5888877654 446889999999999999999
Q ss_pred HHHHHHcC-------CCCeEEEEEcCCCcccchHHHHHHHHhhcC-CCEEEEEECCCCCcccccccCCCCCchhhhhHHH
Q 006251 266 AVARDILG-------KNNNVISVIGDGAMTAGQAYEAMNNAGFLD-ANLIVVLNDNKQVSLPTATLDGPATPVGALSSAL 337 (654)
Q Consensus 266 AlA~kl~g-------~~~~VvaviGDGal~eG~~~EAln~A~~~~-lnLi~Il~dN~~~s~pt~~~~g~~~~vgals~~l 337 (654)
|++.|+.. .+++|||++||||++||++|||+.+|++++ +||++|+|+|+++ +||++..++.+
T Consensus 202 Ala~kyl~~r~~~~~~~~rVy~llGDGEl~EG~~wEA~~~Aa~~kLdNLi~IvD~N~~q------lDG~t~~~~~~---- 271 (889)
T TIGR03186 202 ARFMRYLQNRGLARTEGRKVWGFFGDGEMDEPESIGALSLAARERLDNLVFVINCNLQR------LDGPVRGNGRI---- 271 (889)
T ss_pred HHHHHHHhhccccCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCc------cCCcccccccc----
Confidence 99988443 378999999999999999999999999885 6999999999964 47766543332
Q ss_pred HHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeec-------------------
Q 006251 338 SKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPV------------------- 398 (654)
Q Consensus 338 ~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~v------------------- 398 (654)
++++.++ |+++||+++..+
T Consensus 272 --------------------------~e~l~~k----------------f~a~GW~vi~v~wG~~wd~l~~~d~~~~L~~ 309 (889)
T TIGR03186 272 --------------------------IDELESQ----------------FAGAGWNVIKVLWGSDWDALFARDATGALAR 309 (889)
T ss_pred --------------------------chHHHHH----------------HHhCCCEEEEEeecCchHHhhccccchHHHH
Confidence 2455555 889999988432
Q ss_pred -------------------------------------------------CCCCHHHHHHHHHHhHhCCCCCCEEEEEEee
Q 006251 399 -------------------------------------------------DGHNVEDLVTIFQRVKEMPAPGPVLIHVVTE 429 (654)
Q Consensus 399 -------------------------------------------------DGhDi~~L~~al~~ak~~~~~gP~lI~v~T~ 429 (654)
+|||+++|++|+++|++. .++|++|.++|+
T Consensus 310 ~~~~~~dg~yq~~~~~~ga~~R~~ff~~~~~~~~lv~~~sD~~i~~l~rgGHD~~~i~~A~~~A~~~-~~~PTvIla~Tv 388 (889)
T TIGR03186 310 AFAHTVDGQFQTFSANDGAYNRARFFGQDPALAALVAHLSDEDIDRLRRGGHDARKLYAAYDRAVRH-EGRPTVILAKTM 388 (889)
T ss_pred HHHhcccHHHHHHhhcchHHHHHHhcCccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhC-CCCCEEEEEEee
Confidence 699999999999988865 368999999999
Q ss_pred cCCCCChhhcCccccccccCCC---------------------------Cc----c-----------c-c------ccc-
Q 006251 430 KGKGYPPAEAAADRMHGVVKFD---------------------------PK----T-----------G-K------QFK- 459 (654)
Q Consensus 430 KG~G~~~ae~~~~~~Hg~~~f~---------------------------~~----t-----------g-~------~~~- 459 (654)
||+|.+.++...+.+|+..+++ |. . + . ...
T Consensus 389 kG~G~~~~g~~~~~~H~~~~l~~e~~~~~r~~~g~~~~de~~~~~~~~~~~~~s~~~~~l~~~r~~l~g~~p~r~~~~~~ 468 (889)
T TIGR03186 389 KGFGMGAIGQGRMTTHQQKKLDVEALLAFRDRFRLPLSDADVEQLKFYKPDEDSAEMRYLHARRAALGGYLPRRRTAATH 468 (889)
T ss_pred ecCCCCcccCccccccCcCcCCHHHHHHHHHHcCCCCChHHhhcccccCCCCCCHHHHHHHHHHHHcCCCCCCCCCCCcc
Confidence 9999987766556788843211 10 0 0 0 000
Q ss_pred ----C------------CCCchhHHHHHHHHHHHHH---hhCCcEEEEecCccCCCChh---------------------
Q 006251 460 ----T------------KSPTLTYTQYFAESLIKEA---ETDDKIVAIHAAMGGGTGLN--------------------- 499 (654)
Q Consensus 460 ----~------------~~~~~s~~~a~~~aL~~~~---~~d~~vvvl~aDlg~s~~l~--------------------- 499 (654)
+ ..++.+.+.+|++.|..++ +..++||.+.+|+..++|+.
T Consensus 469 ~~~~p~~~~~~~~~~~~~~~~~sT~~Af~r~l~~L~~~~~~~~riV~i~pD~a~t~gm~~~f~~~gi~~~~gq~y~~~d~ 548 (889)
T TIGR03186 469 ALAVPALPSWGRFALDAEGKEMSTTMAIVRMLGALLKDAELGPRIVPIVADEARTFGMANLFRQVGIYSPLGQRYEPEDL 548 (889)
T ss_pred ccCCCCcchhhhhhccCCCCcccHHHHHHHHHHHHHhCccccCCEEEeCCcccccCCchhhhccccccCcccccCCccch
Confidence 0 1134556779999855555 44678999999999988543
Q ss_pred ----hHHHhCCCCccccchhHHHHHH--HHHHHHhc----CCeeEEeehHHHH-HhHHHHHHHhhhcCCCCEEEEEecCC
Q 006251 500 ----YFQKRFPDRCFDVGIAEQHAVT--FAAGLASE----GVKPFCAIYSSFL-QRGYDQVVHDVDLQKLPVRFAMDRAG 568 (654)
Q Consensus 500 ----~f~~~fp~R~id~GIaE~~mvg--~AaGlA~~----G~~Pi~~tfa~Fl-~ra~dQI~~~~a~~~lpV~~v~~~~G 568 (654)
.+++.+|+|||++||+||+|++ +|+|+|+. |++||+.+|++|. +|++|||++. ++++.+|+++++++|
T Consensus 549 ~~~~~y~e~~p~R~ie~GIAEqnmv~~~iAAGlA~a~~G~g~iPf~~tya~F~~~Ra~Dqir~a-~~~~a~v~lvG~~aG 627 (889)
T TIGR03186 549 GSMLYYREDTDGQILEEGISEAGAISSWIAAATSYSVHDLPMLPFYIYYSMFGFQRIGDLIWAA-ADQRARGFLIGATSG 627 (889)
T ss_pred HHHHHHhhcCCCcEEEechhhHHHHHHHHHHHHhhhhcCCCceEEEEehHHhHhhhHHHHHHHH-hhcCCCcEEEEECCC
Confidence 3557889999999999999999 99999888 7899999999996 8999999887 899999999999999
Q ss_pred c--cCCCCCCCCChhhHHHHhcCCCCEEEecCCHHHHHHHHHHHHh----C-CCCcEEEEecCCCCCCccCCCCCCC-CC
Q 006251 569 L--VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAV----I-DDRPSCFRFPRGNGIGAVLPPNNKG-TP 640 (654)
Q Consensus 569 ~--~g~dG~tHq~~edla~~r~iPnl~V~~PsD~~E~~~ll~~al~----~-~~~P~~ir~~r~~~~~~~~p~~~~~-~~ 640 (654)
+ .+.+|+|||..+|+++||.||||+||.|+|+.|++.+++.++. . .++|+|||+.|.+.+.-.++. ++ ..
T Consensus 628 ~tTlg~eG~tHq~~eDial~r~iPn~tv~~PaDa~E~a~iv~~~~~rm~~~~~~gp~YlRl~r~~~~~p~~~~--~~~~~ 705 (889)
T TIGR03186 628 KTTLGGEGLQHQDGTSHLAASTVPNCRAWDPAFAYEVAVIVDEGMREMLERQRDEFYYLTVTNENYAQPSLPE--DRLDA 705 (889)
T ss_pred ccCCCCCcccccchHhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCCCCCcCC--Ccccc
Confidence 8 5889999999999999999999999999999999999998654 2 468999999998752112221 12 33
Q ss_pred cccCc--e-EEec
Q 006251 641 LETSL--D-SWPM 650 (654)
Q Consensus 641 ~~iGK--a-~vi~ 650 (654)
++.|+ + .+++
T Consensus 706 ~~~gi~kg~y~l~ 718 (889)
T TIGR03186 706 VRRGILKGMYPLD 718 (889)
T ss_pred hhcchhheeeEee
Confidence 55665 6 5655
No 19
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=100.00 E-value=1.5e-65 Score=595.68 Aligned_cols=455 Identities=23% Similarity=0.282 Sum_probs=364.2
Q ss_pred CCCccccCCCCccccCCCCHHH-HHHHHHHHHHHHHHHhhc-cC------CCCCCCccHHHHHHHHHh-hcC-C----CC
Q 006251 138 PPTPLLDTINYPIHMKNLSTED-LEQLAAELRADIVNSVSK-TG------GHLSANLGVVELTLALHR-VFN-T----PD 203 (654)
Q Consensus 138 ~~~~~l~~i~~p~~~~~l~~~~-L~~la~~lR~~il~~v~~-~~------GH~gsslg~vel~~aL~~-v~~-~----p~ 203 (654)
..||+++||..-.+.+-=...+ +++++..||+.++.|+.+ +. ||+++++|+++++.+||. +|+ + .+
T Consensus 66 ~~t~y~nti~~~~~~~~pgd~~~e~~i~~~iR~~a~~mv~~A~~~~~~~GGH~~s~~S~a~i~~vl~~~~~r~~~~~~~~ 145 (896)
T PRK13012 66 LTTPYVNTIPVDQQPPYPGDLALEERLAAIIRWNALAMVVRANRAYGELGGHIASYASAADLFEVGFNHFFRGRDDAGGG 145 (896)
T ss_pred CCCCCccCCChhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcccHHHHHHHHHHHHhhcCCCCCCCCC
Confidence 4589999997544422222222 356899999999999975 44 999999999999999985 454 1 37
Q ss_pred cEEEecCCchH---HHHHHHcCC--hHHHHHHHhc---CCCCCCCCCCCCC-ccccCcccchhhHHHHHHHHHHHHH---
Q 006251 204 DKIIWDVGHQA---YVHKILTGR--RSRMNTMRKT---SGLAGFPKREESV-HDAFGAGHSSTSISAGLGMAVARDI--- 271 (654)
Q Consensus 204 Dr~I~s~GH~a---Y~~~~l~Gr--~~~l~~lrq~---ggl~G~p~~~es~-~~~fg~G~lG~~is~AlGmAlA~kl--- 271 (654)
| +|+++||.+ |+.+.+.|+ .++|.+|||. +|+++||++...+ +..|.||++|+|+++|+|+|++.|+
T Consensus 146 D-~V~skGHasp~lYA~~~l~G~l~~e~L~~fR~~~~~~gl~~~P~p~~~p~~~e~~TGSlG~G~~~ai~~A~~~ryl~~ 224 (896)
T PRK13012 146 D-LVYFQPHSAPGIYARAFLEGRLSEEQLDHFRQEIGGPGLSSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQH 224 (896)
T ss_pred C-EEEECcchHHHHHHHHHHcCCCCHHHHHHhcCCCCCCCCCCCCCcCCCCCCEecCCCCchHHHHHHHHHHHhcccccc
Confidence 8 699999998 899999997 6889999997 4699999976544 6889999999999999999999983
Q ss_pred ----cCCCCeEEEEEcCCCcccchHHHHHHHHhhcC-CCEEEEEECCCCCcccccccCCCCCchhhhhHHHHHhhhchhH
Q 006251 272 ----LGKNNNVISVIGDGAMTAGQAYEAMNNAGFLD-ANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNF 346 (654)
Q Consensus 272 ----~g~~~~VvaviGDGal~eG~~~EAln~A~~~~-lnLi~Il~dN~~~s~pt~~~~g~~~~vgals~~l~~~~~~~~~ 346 (654)
...+++|||++|||||+||.+|||+.+|++++ +||++|+|+|.++ +||++..++.+
T Consensus 225 ~g~~~~~~~~v~~~lGDGEl~Eg~~~eA~~~A~~~~LdNLi~ivD~N~~~------lDG~v~~~~~~------------- 285 (896)
T PRK13012 225 RGLKDTSGRKVWGFFGDGEMDEPESIAALSLAAREGLDNLVFVINCNLQR------LDGPVRGNGRI------------- 285 (896)
T ss_pred cccccCCCCeEEEEEchhhhccHHHHHHHHHHHHhCCCcEEEEEECCCcc------ccCcccccccc-------------
Confidence 45679999999999999999999999999885 7999999999975 47776644332
Q ss_pred HHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeec--------------------------C-
Q 006251 347 RKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPV--------------------------D- 399 (654)
Q Consensus 347 ~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~v--------------------------D- 399 (654)
++++.++ |+++||+++ .| |
T Consensus 286 -----------------~~~l~~~----------------f~a~GW~Vi-~v~wg~~wd~l~~~d~~~~l~~~~~~~~Dg 331 (896)
T PRK13012 286 -----------------IQELEAL----------------FRGAGWNVI-KVLWGSDWDALFARDTTGALVRRFAETVDG 331 (896)
T ss_pred -----------------chHHHHH----------------HHhCCCEEE-EEecccchHHHhcCCCccHHHHHHHhCCcH
Confidence 2455555 999999999 55 8
Q ss_pred ------------------------------------------CCCHHHHHHHHHHhHhCCCCCCEEEEEEeecCCCCChh
Q 006251 400 ------------------------------------------GHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPA 437 (654)
Q Consensus 400 ------------------------------------------GhDi~~L~~al~~ak~~~~~gP~lI~v~T~KG~G~~~a 437 (654)
|||+++|++|++++++. .++|++|.++|+||+|.+.+
T Consensus 332 ~yq~~~~~~g~~~r~~ff~~~~~~~~lv~~~~d~~i~~l~rgGHD~~~i~~A~~~a~~~-~~~PtvIla~TvkG~G~~~~ 410 (896)
T PRK13012 332 QFQTFKANDGAYNREHFFGQDPELAALVAHLSDEDIDRLKRGGHDPRKVYAAYAAAVRH-KGQPTVILAKTKKGYGMGEA 410 (896)
T ss_pred HHHHHhhcchHHHHHHhccccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhC-CCCCEEEEEEeeecCCCCcc
Confidence 99999999999988765 36899999999999999844
Q ss_pred hcCccccccccC--------------------------CC-Ccc-----------ccccc---------------C----
Q 006251 438 EAAADRMHGVVK--------------------------FD-PKT-----------GKQFK---------------T---- 460 (654)
Q Consensus 438 e~~~~~~Hg~~~--------------------------f~-~~t-----------g~~~~---------------~---- 460 (654)
..+...+|+..+ |. |+. ++.+. +
T Consensus 411 ~e~~~~~H~~~~l~~e~~~~~r~~~g~p~~d~~~~~~pf~~p~~~~~~~~~l~~r~~~l~g~~P~r~~~~~~l~~p~~~~ 490 (896)
T PRK13012 411 GEGRMTTHQQKKLDVEALKAFRDRFRLPLSDEQLEQLPFYKPAEDSPEMRYLHARRAALGGYLPRRRTAAPPLPVPPLSA 490 (896)
T ss_pred cCCCcccccCCCCCHHHHHHHHHHcCCCCChhhhccCCCcCCccccHHHHHHHHHHHHhcCcCCcccccccccCCCchhh
Confidence 334467887321 10 000 00000 0
Q ss_pred --------CCCchhHHHHHHHHHHHHHhh---CCcEEEEecCccCCCCh-------------------------hhHHHh
Q 006251 461 --------KSPTLTYTQYFAESLIKEAET---DDKIVAIHAAMGGGTGL-------------------------NYFQKR 504 (654)
Q Consensus 461 --------~~~~~s~~~a~~~aL~~~~~~---d~~vvvl~aDlg~s~~l-------------------------~~f~~~ 504 (654)
..+..+.+.+|+++|.++++. +++||.+++|+..++++ ..|+++
T Consensus 491 ~~~~~~~~~~~~isTr~Afgr~L~~L~k~~~~~~~iV~i~aDla~t~gm~~~f~~~~i~~~~gq~y~~~d~~~~~~yke~ 570 (896)
T PRK13012 491 FAQFALGAGGKEMSTTMAFVRMLGNLLKDKALGPRIVPIVADEARTFGMANLFRQVGIYSPLGQLYEPEDAGSLLYYREA 570 (896)
T ss_pred HHHhhcccCCCcchHHHHHHHHHHHHHhccccCCCEEEeccccccccCcccccccccccccccccccccchhHHhhhhhC
Confidence 113456788999999999987 89999999999977755 235578
Q ss_pred CCCCccccchhHHHHHH--HHHHHHhc----CCeeEEeehHHH-HHhHHHHHHHhhhcCCCCEEEEEecCCc-cCCCCCC
Q 006251 505 FPDRCFDVGIAEQHAVT--FAAGLASE----GVKPFCAIYSSF-LQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPT 576 (654)
Q Consensus 505 fp~R~id~GIaE~~mvg--~AaGlA~~----G~~Pi~~tfa~F-l~ra~dQI~~~~a~~~lpV~~v~~~~G~-~g~dG~t 576 (654)
||+|||++||+||+|++ +|+|+|+. |++||+.+|++| .+|++||+++.++++..+|+++++++|+ +|++|+|
T Consensus 571 ~pgR~ie~GIaEqnm~~~~~AAG~a~a~~G~g~iPf~~tfs~F~~~R~~Dqir~a~~~~~~~vlig~T~gg~tlg~dG~T 650 (896)
T PRK13012 571 KDGQILEEGITEAGAISSWIAAATSYSVHGLPMLPFYIYYSMFGFQRVGDLIWAAADQRARGFLLGATAGRTTLGGEGLQ 650 (896)
T ss_pred CCCcEEecchhhhhhhHHHHHHHhhHHhcCCCcEEEEEehHHHHHHHHHHHHHHHHhcccCCeEEEEeCcccccCCCCCC
Confidence 89999999999999988 88888776 579999999999 5899999999999999999999999998 6899999
Q ss_pred CCChhhHHHHhcCCCCEEEecCCHHHHHHHHHHHHhC-----CCCcEEEEecCCCCCCccCCCCCCCCCcccCceEEe
Q 006251 577 HCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVI-----DDRPSCFRFPRGNGIGAVLPPNNKGTPLETSLDSWP 649 (654)
Q Consensus 577 Hq~~edla~~r~iPnl~V~~PsD~~E~~~ll~~al~~-----~~~P~~ir~~r~~~~~~~~p~~~~~~~~~iGKa~vi 649 (654)
||..+|+++||.||||+||.|+|+.|++.+++.++.+ .+.|+|||+.|++.+.-.+|.. ....|..|+ .++
T Consensus 651 HQ~~eslal~RaIPN~~V~~PADa~E~a~iv~~al~~m~~~~~~~p~YIrL~r~~~~~p~~~~~-~~~~i~kG~-y~l 726 (896)
T PRK13012 651 HQDGHSHLLASTIPNCRAYDPAFAYELAVIVDDGMRRMLEEQEDVFYYLTVMNENYAQPALPEG-AEEGILKGM-YRL 726 (896)
T ss_pred CcchHhHHHHHhCCCCEEEeCCCHHHHHHHHHHHHHHHHhccCCCeEEEEecCCCCCCCCCCcc-chhccccCc-EEE
Confidence 9999999999999999999999999999999988733 3689999999998632123321 124555565 444
No 20
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=100.00 E-value=5.5e-65 Score=588.81 Aligned_cols=455 Identities=23% Similarity=0.282 Sum_probs=368.7
Q ss_pred CCCccccCCCCccccCCCCHHHH-HHHHHHHHHHHHHHhhc-c------CCCCCCCccHHHHHHHHHh-hcCCC-----C
Q 006251 138 PPTPLLDTINYPIHMKNLSTEDL-EQLAAELRADIVNSVSK-T------GGHLSANLGVVELTLALHR-VFNTP-----D 203 (654)
Q Consensus 138 ~~~~~l~~i~~p~~~~~l~~~~L-~~la~~lR~~il~~v~~-~------~GH~gsslg~vel~~aL~~-v~~~p-----~ 203 (654)
..||+++||..-.+.+-=...++ +++++.||+..+.||.+ + |||+++++|+++++.+||. .|+.| +
T Consensus 58 ~~t~y~nti~~~~~~~~pg~~~~e~~i~~~iR~~a~~mv~~An~~~~~~GGH~~s~~S~a~i~~vl~~~~~r~~~~~~~~ 137 (891)
T PRK09405 58 ATTPYINTIPVEEEPEYPGDLELERRIRSYIRWNAAAMVLRANKKDLGLGGHISSFASSATLYEVGFNHFFRAPNEPHGG 137 (891)
T ss_pred CCCCCccCCChhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcccChHHHHHHHHHHHHhhCCCCCCCCCC
Confidence 35999999976555433333333 56689999999999964 3 4999999999999999985 45532 4
Q ss_pred cEEEecCCchH---HHHHHHcCC--hHHHHHHHhc--C-CCCCCCCCCC-CCccccCcccchhhHHHHHHHHHHHHH---
Q 006251 204 DKIIWDVGHQA---YVHKILTGR--RSRMNTMRKT--S-GLAGFPKREE-SVHDAFGAGHSSTSISAGLGMAVARDI--- 271 (654)
Q Consensus 204 Dr~I~s~GH~a---Y~~~~l~Gr--~~~l~~lrq~--g-gl~G~p~~~e-s~~~~fg~G~lG~~is~AlGmAlA~kl--- 271 (654)
| ||+++||.+ |+.+++.|+ .++|.+|||. | ++++||++.. +.+..|.+|++|+|++.|+|+|++.|+
T Consensus 138 D-~V~skGHasp~lYA~~~l~G~l~~e~L~~fR~~~~g~gl~syPhp~~~p~~~~~~tgS~G~G~~~a~~~A~~~kyl~~ 216 (891)
T PRK09405 138 D-LVFFQGHASPGIYARAFLEGRLTEEQLDNFRQEVDGKGLSSYPHPWLMPDFWQFPTVSMGLGPIMAIYQARFLKYLEN 216 (891)
T ss_pred C-EEEECchHHHHHHHHHHHcCCCCHHHHHHhcCCCCCCCCCCCCCcCCCCCCeecCccccchhHHHHHHHHHhCccccc
Confidence 6 899999998 999999998 6899999995 4 6999999754 345788999999999999999999994
Q ss_pred ----cCCCCeEEEEEcCCCcccchHHHHHHHHhhcC-CCEEEEEECCCCCcccccccCCCCCchhhhhHHHHHhhhchhH
Q 006251 272 ----LGKNNNVISVIGDGAMTAGQAYEAMNNAGFLD-ANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNF 346 (654)
Q Consensus 272 ----~g~~~~VvaviGDGal~eG~~~EAln~A~~~~-lnLi~Il~dN~~~s~pt~~~~g~~~~vgals~~l~~~~~~~~~ 346 (654)
++.+++|||++|||||+||.+|||+..|++++ +||++|+|+|.++ +||++..++.+
T Consensus 217 ~~~~~~~~~rv~~~~GDGEldEg~~~EA~~~A~~~~LdNLi~ivD~N~q~------lDG~v~~~~~~------------- 277 (891)
T PRK09405 217 RGLKDTSDQKVWAFLGDGEMDEPESLGAISLAAREKLDNLIFVINCNLQR------LDGPVRGNGKI------------- 277 (891)
T ss_pred cccccCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEECCCcc------cCCcccccccc-------------
Confidence 45689999999999999999999999999885 7999999999975 47776644332
Q ss_pred HHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeec--------------------------C-
Q 006251 347 RKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPV--------------------------D- 399 (654)
Q Consensus 347 ~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~v--------------------------D- 399 (654)
++++.++ |+++||+++ .| |
T Consensus 278 -----------------~~~l~~~----------------f~a~GW~Vi-~v~wG~~wd~l~~~d~~g~L~~~~~~~~Dg 323 (891)
T PRK09405 278 -----------------IQELEGI----------------FRGAGWNVI-KVIWGSRWDPLLAKDTSGKLVQLMNETVDG 323 (891)
T ss_pred -----------------chhHHHH----------------HhhCCCEEE-EEeccccchhhhccCCccHHHHHHHhCCcH
Confidence 2445554 999999999 45 4
Q ss_pred ------------------------------------------CCCHHHHHHHHHHhHhCCCCCCEEEEEEeecCCCC-Ch
Q 006251 400 ------------------------------------------GHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGY-PP 436 (654)
Q Consensus 400 ------------------------------------------GhDi~~L~~al~~ak~~~~~gP~lI~v~T~KG~G~-~~ 436 (654)
|||+++|.+|++++++. .++|++|.++|+||+|. +.
T Consensus 324 ~yq~~~~~~ga~~R~~ffg~~~~~~~lv~~~sD~~i~~l~~gGHD~~~i~~A~~~A~~~-~~~PtvIia~TvkG~G~~~~ 402 (891)
T PRK09405 324 DYQTYKAKDGAYVREHFFGKYPETKALVADMSDDDIWALNRGGHDPRKVYAAYKAAVEH-KGQPTVILAKTIKGYGMGEA 402 (891)
T ss_pred HHHHHHhcccHHHHHHhcCCCHHHHHHHhhCCHHHHHHhccCCCCHHHHHHHHHHHHhC-CCCCEEEEEeceecCCCCcc
Confidence 99999999999988865 36899999999999999 55
Q ss_pred hhcCccccccccCCC---------------------------Cccc-----------c--------------ccc-C---
Q 006251 437 AEAAADRMHGVVKFD---------------------------PKTG-----------K--------------QFK-T--- 460 (654)
Q Consensus 437 ae~~~~~~Hg~~~f~---------------------------~~tg-----------~--------------~~~-~--- 460 (654)
+|+ .+.+|+..+++ ++.+ + +++ +
T Consensus 403 ~e~-~~~~H~~~~l~~e~~~~~r~~~g~~~~d~~~~~~~~~~~~~~s~e~~~l~~~r~~l~g~~p~r~~~~~~~~~P~~~ 481 (891)
T PRK09405 403 GEG-KNIAHQVKKLDLDDLKHFRDRFNIPISDEQLEKLPYYKPGEDSPEIKYLHERRKALGGYLPARRPKFEPLEVPALS 481 (891)
T ss_pred cCC-CccccCCCCCCHHHHHHHHHHcCCCCChhHhccCCCcCCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCChh
Confidence 554 46778742111 0000 0 000 0
Q ss_pred ---------CCCchhHHHHHHHHHHHHHhh---CCcEEEEecCccCCCCh-------------------------hhHHH
Q 006251 461 ---------KSPTLTYTQYFAESLIKEAET---DDKIVAIHAAMGGGTGL-------------------------NYFQK 503 (654)
Q Consensus 461 ---------~~~~~s~~~a~~~aL~~~~~~---d~~vvvl~aDlg~s~~l-------------------------~~f~~ 503 (654)
..++.+.+.+|+++|.++++. +++||.+.+|+..++++ ..|++
T Consensus 482 ~~~~~~~~~~~~~~sT~~Afgr~L~~L~~~~~~~~riV~i~pD~a~t~g~~~~f~~~gi~~~~gq~y~~~d~~~~~~yke 561 (891)
T PRK09405 482 AFEALLKGSGEREISTTMAFVRILNILLKDKEIGKRIVPIIPDEARTFGMEGLFRQIGIYNPHGQLYTPVDRDQLMYYKE 561 (891)
T ss_pred hHHHhhccCCCCcccHHHHHHHHHHHHHhccccCCcEEEeccccccccCcchhhccccccccccccccccccHHHHHHHH
Confidence 023456688999999999986 89999999999998877 46778
Q ss_pred hCCCCccccchhHHHHHH--HHHHHHhc----CCeeEEeehHHH-HHhHHHHHHHhhhcCCCCEEEEEecCCc-cCCCCC
Q 006251 504 RFPDRCFDVGIAEQHAVT--FAAGLASE----GVKPFCAIYSSF-LQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGP 575 (654)
Q Consensus 504 ~fp~R~id~GIaE~~mvg--~AaGlA~~----G~~Pi~~tfa~F-l~ra~dQI~~~~a~~~lpV~~v~~~~G~-~g~dG~ 575 (654)
+||+||||+||+||+|++ +|+|+|+. |++||+.+|++| ++|++|||++.+++++.+|+++++++|+ .+.+|.
T Consensus 562 ~~PgRf~e~GIAEqnmv~~~vAAGlA~a~~G~g~iPF~~tya~F~~~Ra~Dqir~a~~~~~~~v~iggt~gg~tl~~eG~ 641 (891)
T PRK09405 562 SKDGQILQEGINEAGAMASWIAAATSYSTHGEPMIPFYIYYSMFGFQRIGDLAWAAGDQRARGFLLGGTAGRTTLNGEGL 641 (891)
T ss_pred cCCCcEEEechhhhHHHHHHHHHHHhhhhcCCCceEEEEehHHhhhhhHHHHHHHHHHhcCCCeEEEEECccccCCCCcc
Confidence 999999999999999999 99998888 779999999999 5899999999999999999999999998 588999
Q ss_pred CCCChhhHHHHhcCCCCEEEecCCHHHHHHHHHHHHh---CCCC--cEEEEecCCCCCCccCCCCCCCCCcccCce-EEe
Q 006251 576 THCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAV---IDDR--PSCFRFPRGNGIGAVLPPNNKGTPLETSLD-SWP 649 (654)
Q Consensus 576 tHq~~edla~~r~iPnl~V~~PsD~~E~~~ll~~al~---~~~~--P~~ir~~r~~~~~~~~p~~~~~~~~~iGKa-~vi 649 (654)
|||..+|+++||.||||+||.|+|+.|++.+++.++. ...+ |.|+|+...+.. .|...+++++.+||+ .++
T Consensus 642 qHqdg~s~~l~raiPn~tv~~PADa~E~a~iv~~~l~rm~~~~~~~~yYlrl~ne~~~---~~~~pe~~~~~igKg~y~L 718 (891)
T PRK09405 642 QHEDGHSHILASTIPNCVSYDPAFAYEVAVIVQDGLRRMYGEQENVFYYITVMNENYH---QPAMPEGAEEGILKGMYKL 718 (891)
T ss_pred cCCchhhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCC---CCCCCcccccccceEEEEe
Confidence 9999999999999999999999999999999999865 1344 777888622221 121124578999997 887
Q ss_pred cc
Q 006251 650 MS 651 (654)
Q Consensus 650 ~~ 651 (654)
++
T Consensus 719 r~ 720 (891)
T PRK09405 719 ET 720 (891)
T ss_pred cc
Confidence 75
No 21
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=100.00 E-value=2.5e-49 Score=453.57 Aligned_cols=433 Identities=22% Similarity=0.288 Sum_probs=340.3
Q ss_pred CCCccccCCCCccccCCCCHHH-HHHHHHHHHHHHHHHhhc-c------CCCCCCCccHHHHHHHHHh-hcCC-C----C
Q 006251 138 PPTPLLDTINYPIHMKNLSTED-LEQLAAELRADIVNSVSK-T------GGHLSANLGVVELTLALHR-VFNT-P----D 203 (654)
Q Consensus 138 ~~~~~l~~i~~p~~~~~l~~~~-L~~la~~lR~~il~~v~~-~------~GH~gsslg~vel~~aL~~-v~~~-p----~ 203 (654)
..||+++||..-.+.+-=...+ .++++..||+.++.|+.+ + +||+|+++|+++|+.+||+ +|+. | +
T Consensus 52 ~~t~y~nti~~~~~~~~pgd~~~e~~i~~~iR~~ai~MV~~A~~~~~~vgGHigsslS~adIl~vLy~~~lr~~~~~~~r 131 (885)
T TIGR00759 52 TTTDYINTIPVEEQPAYPGDLELERRIRSIIRWNAIAMVLRANKKDLGLGGHISTYASAATLYEVGFNHFFRGHSEGGGG 131 (885)
T ss_pred CCCCCccCCChhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcCCcHHHHHHHHHHHHHhcCCCCCCCCC
Confidence 4599999997544433222223 356679999999999975 5 7999999999999999985 4552 2 6
Q ss_pred cEEEecCCchH---HHHHHHcCC--hHHHHHHHh---cCCCCCCCCCCC-CCccccCcccchhhHHHHHHHHHHHHH---
Q 006251 204 DKIIWDVGHQA---YVHKILTGR--RSRMNTMRK---TSGLAGFPKREE-SVHDAFGAGHSSTSISAGLGMAVARDI--- 271 (654)
Q Consensus 204 Dr~I~s~GH~a---Y~~~~l~Gr--~~~l~~lrq---~ggl~G~p~~~e-s~~~~fg~G~lG~~is~AlGmAlA~kl--- 271 (654)
| +|+|+||.+ |+.+.+.|+ .++|.+||| .+++++||++.. +.+..|.+|++|+|+++|+|+|++.|+
T Consensus 132 D-~VlSKGHasp~lYA~L~l~G~ls~e~L~~FRq~~~g~gL~shPhp~~~p~~ve~sTGSLG~Gls~AvG~Ala~Kyl~~ 210 (885)
T TIGR00759 132 D-LVFFQGHAAPGIYARAFLEGRLTEEQLDNFRQEVQGDGLSSYPHPWLMPDFWQFPTVSMGLGPINAIYQARFMKYLEN 210 (885)
T ss_pred C-EEEECCcHHHHHHHHHHHcCCCCHHHHHHhcCCCCCCCCCCCCCcCcCCCCEEeCCCCccHHHHHHHHHHHHHHHHHh
Confidence 8 599999998 899999997 689999999 456999999765 345889999999999999999999996
Q ss_pred ----cCCCCeEEEEEcCCCcccchHHHHHHHHhhcC-CCEEEEEECCCCCcccccccCCCCCchhhhhHHHHHhhhchhH
Q 006251 272 ----LGKNNNVISVIGDGAMTAGQAYEAMNNAGFLD-ANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNF 346 (654)
Q Consensus 272 ----~g~~~~VvaviGDGal~eG~~~EAln~A~~~~-lnLi~Il~dN~~~s~pt~~~~g~~~~vgals~~l~~~~~~~~~ 346 (654)
++.+++|||++||||++||++|||+.+|++++ +||++|+|+|+++ +||++..++.+
T Consensus 211 rg~~~~~~~rVyvllGDGEldEG~swEA~~~Aa~~kLdNLi~IVD~N~~q------lDG~v~~~~~i------------- 271 (885)
T TIGR00759 211 RGLKDTGDQKVWAFLGDGEMDEPESKGAITFAAREKLDNLTFVINCNLQR------LDGPVRGNGKI------------- 271 (885)
T ss_pred hccCCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCc------cCCcccccccc-------------
Confidence 56789999999999999999999999999886 6999999999975 47776654432
Q ss_pred HHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeec----------------------------
Q 006251 347 RKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPV---------------------------- 398 (654)
Q Consensus 347 ~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~v---------------------------- 398 (654)
++++.++ |+++||+++ .|
T Consensus 272 -----------------~e~le~~----------------F~a~GW~Vi-~V~wg~~wd~lf~~d~~g~L~~~m~~~~dg 317 (885)
T TIGR00759 272 -----------------IQELESL----------------FRGAGWNVI-KVLWGSEWDALLARDTSGVLVKLMNETVDG 317 (885)
T ss_pred -----------------chhHHHH----------------HHhcCCEEE-EEecCccchHhhcCCCccHHHHHHHhcccH
Confidence 2444444 888888888 45
Q ss_pred -----------------------------------------CCCCHHHHHHHHHHhHhCCCCCCEEEEEEeecCCCCChh
Q 006251 399 -----------------------------------------DGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPA 437 (654)
Q Consensus 399 -----------------------------------------DGhDi~~L~~al~~ak~~~~~gP~lI~v~T~KG~G~~~a 437 (654)
+|||+++|++|++++++. .++|++|.++|+||+|.++.
T Consensus 318 ~yq~~~~~~Ga~~R~~ffg~~~~l~~lv~~~sD~~i~~l~rgGHD~~~I~~A~~~A~~~-~grPTvIlA~TvKG~G~~~~ 396 (885)
T TIGR00759 318 DYQTYKAKDGAYVREHFFNRTPELKALVADMSDADIWALNRGGHDPRKVYAAYAAAQEH-KGQPTVILAKTIKGYGMGDA 396 (885)
T ss_pred HHHHHhhcchHHHHHHhccccHHHHHHhhccchhhhhhccCCCCCHHHHHHHHHHHHhC-CCCCEEEEEeeeecCCCChh
Confidence 699999999999888765 35899999999999999844
Q ss_pred hcCccccccccCCC---------------------------Cccc-----------c--------------cc-cC----
Q 006251 438 EAAADRMHGVVKFD---------------------------PKTG-----------K--------------QF-KT---- 460 (654)
Q Consensus 438 e~~~~~~Hg~~~f~---------------------------~~tg-----------~--------------~~-~~---- 460 (654)
..+.+.||+..+++ ++.+ + ++ .|
T Consensus 397 ~e~~n~~H~~k~l~~e~l~~~r~~~g~~~~d~~~~~~~~~~~~~~s~e~~y~~~rr~~Lgg~~p~R~~~~~~l~vP~l~~ 476 (885)
T TIGR00759 397 AESRNTAHQVKKLEVDALKNFRDRFELPLSDAQVEELPYYHPGEGSPEVRYLLARRQALGGYLPARRTFAEHLTVPALEF 476 (885)
T ss_pred hCCCcccccCCCCCHHHHHHHHHHcCCCCChhHhccCCCcCCCCCCHHHHHHHHHHHHhCCCCCCcCCCCCCCCCCCchh
Confidence 33456888743211 0000 0 00 00
Q ss_pred --------CCCchhHHHHHHHHHHHHHhhC---CcEEEEecCccCCCChhhHHHh-------------------------
Q 006251 461 --------KSPTLTYTQYFAESLIKEAETD---DKIVAIHAAMGGGTGLNYFQKR------------------------- 504 (654)
Q Consensus 461 --------~~~~~s~~~a~~~aL~~~~~~d---~~vvvl~aDlg~s~~l~~f~~~------------------------- 504 (654)
..++.+-+.+|...|..+++.. ++||-+.+|...++|+.++..+
T Consensus 477 ~~~~~~~~~~~~~STt~afvr~l~~L~r~~~~g~riVpi~pDeartfgm~g~f~~~gIy~~~gq~y~p~d~~~~~~y~e~ 556 (885)
T TIGR00759 477 FGALLKGSGEREVSTTMAFVRILNKLLKDKEIGKRIVPIVPDEARTFGMEGLFRQIGIYSPHGQTYTPVDADSLLAYKES 556 (885)
T ss_pred hHHHhcCCCCCCccHHHHHHHHHHHHhcCcccccceeecCCCccccCChHHhhcccCccCCCCccCCccchhhhhhcccC
Confidence 1145667788999888887653 4689999999999988665421
Q ss_pred CCCCccccchhHHHHHHH--HHHHHh--cC--CeeEEeehHHH-HHhHHHHHHHhhhcCCCCEEEEEecCCc--cCCCCC
Q 006251 505 FPDRCFDVGIAEQHAVTF--AAGLAS--EG--VKPFCAIYSSF-LQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGP 575 (654)
Q Consensus 505 fp~R~id~GIaE~~mvg~--AaGlA~--~G--~~Pi~~tfa~F-l~ra~dQI~~~~a~~~lpV~~v~~~~G~--~g~dG~ 575 (654)
-.+|+++.||+|.+.++. |+|.+. +| ++||.-.|++| ++|..|. ...++.|...-.++++.+|. ....|.
T Consensus 557 ~~Gq~le~GI~E~g~~~~~~aagtsys~~g~~miP~yi~YsmFgfqR~gD~-~waa~d~~argfl~g~taGrtTL~gEGl 635 (885)
T TIGR00759 557 KDGQILQEGINEAGAMASWIAAATSYATHGEPMIPFYIYYSMFGFQRIGDL-CWAAADQRARGFLLGATAGRTTLNGEGL 635 (885)
T ss_pred CCCcchhhhhhhHHHHHHHHHHHhHHhhCCCeeeeeeEeeccccccchHHH-HHHHhhhcCCceEeccCCCcccCCCccc
Confidence 238999999999999875 444444 36 68999999999 8999997 47889999999999999998 255799
Q ss_pred CCCChhhHHHHhcCCCCEEEecCCHHHHHHHHHHHHhC---CCCcEEEEecCCC
Q 006251 576 THCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVI---DDRPSCFRFPRGN 626 (654)
Q Consensus 576 tHq~~edla~~r~iPnl~V~~PsD~~E~~~ll~~al~~---~~~P~~ir~~r~~ 626 (654)
+||..--.-+-..+||+.-|.|+.+.|+..+++..+.+ ...-+|++++--|
T Consensus 636 qHqdg~s~~~~~~~P~~~~ydPafa~Ela~i~~~g~~rm~~~~~~v~yylt~~n 689 (885)
T TIGR00759 636 QHEDGHSLLQAATIPNCIAYDPAFAYEVAVIMEDGLRRMYGEQEDVFYYVTVMN 689 (885)
T ss_pred cCccccchHHHhcCCCceeecCchHHHHHHHHHHHHHHHhhCCCCEEEEEEecC
Confidence 99976666678899999999999999999999988765 2456888888733
No 22
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2e-46 Score=368.64 Aligned_cols=222 Identities=32% Similarity=0.545 Sum_probs=199.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhc-cCCCCCCCccHHHHHHHHHhh-cC----CC----CcEEEecCCchH---HHHHHHc
Q 006251 155 LSTEDLEQLAAELRADIVNSVSK-TGGHLSANLGVVELTLALHRV-FN----TP----DDKIIWDVGHQA---YVHKILT 221 (654)
Q Consensus 155 l~~~~L~~la~~lR~~il~~v~~-~~GH~gsslg~vel~~aL~~v-~~----~p----~Dr~I~s~GH~a---Y~~~~l~ 221 (654)
++..+|+++|.++|+.+++|+.. ..||+|+|||++||+++||+. ++ +| |||||+||||.+ |+.+...
T Consensus 5 ~~~~~L~~~A~~iRr~~v~m~~~~~~GH~G~SLS~~eILa~LYf~~m~~~p~~p~~~~RDrfiLSKGHaa~AlYa~Lae~ 84 (243)
T COG3959 5 LSVDELERIAREIRRNIVRMLANAGSGHVGGSLSVVEILAVLYFKIMNIDPDDPKWPGRDRFILSKGHAAPALYATLAEK 84 (243)
T ss_pred ccHHHHHHHHHHHHHHHHHHhcccCCCCcCccchHHHHHHHHHHHHhccCCCCCCCCCCCeEEEecccchHHHHHHHHHc
Confidence 67889999999999999999975 778999999999999999864 33 22 799999999998 8888999
Q ss_pred CC--hHHHHHHHhcCC-CCCCCCCCCCCccccCcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHH
Q 006251 222 GR--RSRMNTMRKTSG-LAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNN 298 (654)
Q Consensus 222 Gr--~~~l~~lrq~gg-l~G~p~~~es~~~~fg~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~ 298 (654)
|. +++|.+|++.++ |+|||.+..+|++...+|++||+||+|+|||++.|+++.+.+|++++||||++||++|||+..
T Consensus 85 G~~p~eeL~~~~~~~srL~~Hp~~~~~pgve~stGSLGqGLsvavGmAlg~kl~~~~~~VyvilGDGEl~EG~~WEAam~ 164 (243)
T COG3959 85 GYFPEEELETFRRIGSRLPGHPERNKTPGVEVSTGSLGQGLSVAVGMALGAKLKGSPYRVYVILGDGELDEGQVWEAAMT 164 (243)
T ss_pred CCCCHHHHHHhccCCCcCCCCCccCCCCceeecCCcccccchHHHHHHHHHhhcCCCceEEEEecCcccccccHHHHHHH
Confidence 96 688999999987 999999988999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcC-CCEEEEEECCCCCcccccccCCCCCchhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhh
Q 006251 299 AGFLD-ANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARG 377 (654)
Q Consensus 299 A~~~~-lnLi~Il~dN~~~s~pt~~~~g~~~~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~ 377 (654)
|++++ .||+.|+|.|+.+ +||.+.++.. .+++.+|
T Consensus 165 Aah~~L~NLiaivD~N~~Q------ldG~t~~i~~-------------------------------~~pL~~k------- 200 (243)
T COG3959 165 AAHYKLDNLIAIVDRNKLQ------LDGETEEIMP-------------------------------KEPLADK------- 200 (243)
T ss_pred HHHhccCcEEEEEecCCcc------cCCchhhccC-------------------------------cchhHHH-------
Confidence 99875 7899999999853 5777665432 2667776
Q ss_pred ccCCChhhhhhhcCCeEEeecCCCCHHHHHHHHHHhHhCCCCCCEEEEEEeecC
Q 006251 378 LISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKG 431 (654)
Q Consensus 378 ~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al~~ak~~~~~gP~lI~v~T~KG 431 (654)
||+|||+++ +|||||+++|.+++++++..+ ++|++|+++|+||
T Consensus 201 ---------~eAFGw~V~-evdG~d~~~i~~a~~~~~~~~-~rP~~IIa~Tvkg 243 (243)
T COG3959 201 ---------WEAFGWEVI-EVDGHDIEEIVEALEKAKGSK-GRPTVIIAKTVKG 243 (243)
T ss_pred ---------HHhcCceEE-EEcCcCHHHHHHHHHhhhccC-CCCeEEEEecccC
Confidence 999999999 899999999999999998753 4999999999987
No 23
>PRK05261 putative phosphoketolase; Provisional
Probab=100.00 E-value=6.6e-42 Score=392.93 Aligned_cols=386 Identities=18% Similarity=0.215 Sum_probs=295.2
Q ss_pred cCCCCCCCccHHHHHHHHHhhcCC-CCc-EEEecCCchH---HHHHHHcC-----Ch----HH--HH-HHHhcC---CCC
Q 006251 178 TGGHLSANLGVVELTLALHRVFNT-PDD-KIIWDVGHQA---YVHKILTG-----RR----SR--MN-TMRKTS---GLA 237 (654)
Q Consensus 178 ~~GH~gsslg~vel~~aL~~v~~~-p~D-r~I~s~GH~a---Y~~~~l~G-----r~----~~--l~-~lrq~g---gl~ 237 (654)
--||+|++.|+..+.++|..+.+. ..| .+|++.||++ |+..+|.| .. ++ |. .|||++ |++
T Consensus 48 ~~GHwGt~pgln~vyahln~li~~~~~~~~~V~g~GHg~p~~~a~~~L~Gs~~~~yp~is~d~~gl~~lfrqfs~pgg~~ 127 (785)
T PRK05261 48 LLGHWGTTPGLNFIYAHLNRLIRKYDLNMIYITGPGHGGPAMVANAYLEGTYSEIYPEITQDEEGMARLFKQFSFPGGIP 127 (785)
T ss_pred cCCCCCCcHHHHHHHHHHHHHHhhcCCceEEEeCCCccHHHHHHHHHHcCCCcccCCCCCccHHHHHHHHHhccCCCCcC
Confidence 369999999999999999876542 234 4688899998 88899999 21 22 66 578874 589
Q ss_pred CCCCCCCCCccccCcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccch---HHHHHHHHhhc-CCCEEEEEECC
Q 006251 238 GFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQ---AYEAMNNAGFL-DANLIVVLNDN 313 (654)
Q Consensus 238 G~p~~~es~~~~fg~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~---~~EAln~A~~~-~lnLi~Il~dN 313 (654)
|||.+ +.++....+|.+|++++.|+|||+. +++.+|+|++||||.++|. .|++.++++.. +.+|+.|+++|
T Consensus 128 sH~~~-~tPGi~~~~G~LG~gls~A~G~Al~----~~d~iv~~~vGDGE~EeG~lAa~W~~~~~~~~~~~g~vLPIld~N 202 (785)
T PRK05261 128 SHAAP-ETPGSIHEGGELGYSLSHAYGAAFD----NPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLN 202 (785)
T ss_pred CCCCC-CCCCeeeCCCchhhHHHHHHHHHHc----CCCCEEEEEECcCchhhhhhHHHhhhhhhcccccCCCEEEEEEec
Confidence 99985 6788888999999999999999964 5688999999999999998 59999988765 58999999999
Q ss_pred CC-CcccccccCCCCCchhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCC
Q 006251 314 KQ-VSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGL 392 (654)
Q Consensus 314 ~~-~s~pt~~~~g~~~~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~ 392 (654)
++ ++.|+.... . ..+++.++ |++|||
T Consensus 203 g~~Is~pt~~~~--------~-----------------------------~~e~l~~r----------------f~g~Gw 229 (785)
T PRK05261 203 GYKIANPTILAR--------I-----------------------------SDEELEAL----------------FRGYGY 229 (785)
T ss_pred CCcCCCCccccc--------c-----------------------------CcHhHHHH----------------HHHCCC
Confidence 85 333332100 0 11445554 999999
Q ss_pred eEEeecCCCCHHHHHHHH--------H-------HhHhC-CCCCCE--EEEEEeecCCCCCh------hhcCcccccccc
Q 006251 393 YYIGPVDGHNVEDLVTIF--------Q-------RVKEM-PAPGPV--LIHVVTEKGKGYPP------AEAAADRMHGVV 448 (654)
Q Consensus 393 ~~ig~vDGhDi~~L~~al--------~-------~ak~~-~~~gP~--lI~v~T~KG~G~~~------ae~~~~~~Hg~~ 448 (654)
+++ .|||||++++.+++ + +||.. ...+|+ +|+++|.||+|-|. .|+ ..+.|+++
T Consensus 230 ~~i-~VDG~D~~av~~a~a~al~~~i~~i~~iq~~Ar~~~~~~~P~wp~Ii~rT~kG~g~p~~~dg~~~eG-s~raHqvP 307 (785)
T PRK05261 230 EPY-FVEGDDPADMHQEMAAALDTAIEEIRAIQKEAREGGDTTRPRWPMIVLRTPKGWTGPKEVDGKPIEG-SWRAHQVP 307 (785)
T ss_pred eeE-EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEECCccCCCCcccCCcccCC-CchhhcCC
Confidence 999 78999999988873 3 23321 114788 99999999999663 343 35678876
Q ss_pred C-------------------------CCCc------------ccc-------------ccc----CC-------------
Q 006251 449 K-------------------------FDPK------------TGK-------------QFK----TK------------- 461 (654)
Q Consensus 449 ~-------------------------f~~~------------tg~-------------~~~----~~------------- 461 (654)
. |+.. +|. ..+ +.
T Consensus 308 L~~~~~~~~~~~~L~~wl~sy~p~elF~~~g~l~~~~~~l~p~g~~r~~~~P~ang~~~~~~l~lp~~~~~~~~~~~~g~ 387 (785)
T PRK05261 308 LANVRDNPEHLDLLEDWLRSYRPEELFDEDGRLKPELAALAPKGDRRMGANPHANGGLLLRDLRLPDFRDYAVPVGKPGA 387 (785)
T ss_pred CCCcccCHHHHHHHHHHhhcCChhhhcCCCCchhHHHHHhccCchhhhcCCchhcCCcCccccCCCchHhhcccccCCCc
Confidence 2 1100 000 000 00
Q ss_pred CCchhHHHHHHHHHHHHHhhCCc-EEEEecCccCCCChhhHHH-----------------hCCCCccccchhHHHHHHHH
Q 006251 462 SPTLTYTQYFAESLIKEAETDDK-IVAIHAAMGGGTGLNYFQK-----------------RFPDRCFDVGIAEQHAVTFA 523 (654)
Q Consensus 462 ~~~~s~~~a~~~aL~~~~~~d~~-vvvl~aDlg~s~~l~~f~~-----------------~fp~R~id~GIaE~~mvg~A 523 (654)
...... .++++.|.++++.+|+ ++++++|...|.+++...+ ...+|+++ +|+|++|.|++
T Consensus 388 ~~~~at-r~~g~~l~~v~~~np~~frvf~pDe~~SNrl~~~f~~t~r~~~~~~~~~d~~~~~~Grvie-~LsEh~~~g~~ 465 (785)
T PRK05261 388 VMAEAT-RVLGKYLRDVIKLNPDNFRIFGPDETASNRLQAVFEVTDRQWMAEILPYDEHLAPDGRVME-VLSEHLCEGWL 465 (785)
T ss_pred cccccH-HHHHHHHHHHHHhCCCceEEEcCCcchhhccHhHHhhhccccccccCCcccccCCCCCeee-eecHHHHHHHH
Confidence 001123 3388999999999999 8899999999888743322 22389999 99999999999
Q ss_pred HHHHhcCCeeEEeehHHHH---HhHHHHH----HHhhh------cCCCCEEEEEecCCc-cCCCCCCCCC---hhhHHHH
Q 006251 524 AGLASEGVKPFCAIYSSFL---QRGYDQV----VHDVD------LQKLPVRFAMDRAGL-VGADGPTHCG---AFDVTFM 586 (654)
Q Consensus 524 aGlA~~G~~Pi~~tfa~Fl---~ra~dQI----~~~~a------~~~lpV~~v~~~~G~-~g~dG~tHq~---~edla~~ 586 (654)
.|+++.|.++++.+|..|+ ..++.|+ +.... +..++ ++.++... +|+||+|||. ++.++-+
T Consensus 466 ~Gy~LtG~~~~~~sYeaF~~ivd~m~~q~~kw~r~~~~~~wr~~~~sLn--~l~Ts~~~~qghNG~THQ~Pg~ie~l~~~ 543 (785)
T PRK05261 466 EGYLLTGRHGFFSSYEAFIHIVDSMFNQHAKWLKVAREIPWRKPIPSLN--YLLTSHVWRQDHNGFSHQDPGFIDHVANK 543 (785)
T ss_pred HHHHhcCCCcceecHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCccee--EEeecceeecCCCCCCCCCchHHHHHHhc
Confidence 9999999999999999998 6777776 32110 22333 66666655 7999999999 9999999
Q ss_pred hcCCCCEEEecCCHHHHHHHHHHHHhCCCCcEEEEecCCCCC
Q 006251 587 SCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGI 628 (654)
Q Consensus 587 r~iPnl~V~~PsD~~E~~~ll~~al~~~~~P~~ir~~r~~~~ 628 (654)
|. |+++||+|+|++|+.++++.|++..++|++|.++|++.+
T Consensus 544 r~-~~~rV~rPaDaNe~laa~~~al~s~~~p~~IvlsRQ~lp 584 (785)
T PRK05261 544 KP-DVIRVYLPPDANTLLAVADHCLRSRNYINVIVAGKQPRP 584 (785)
T ss_pred CC-CcceEEeCCCHHHHHHHHHHHHHhCCCCEEEEEeCCCCc
Confidence 88 999999999999999999999998899999999999864
No 24
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=100.00 E-value=7.1e-43 Score=347.10 Aligned_cols=195 Identities=66% Similarity=1.075 Sum_probs=176.9
Q ss_pred CCCCCCCccHHHHHHHHHhhcCCCCcEEEecCCchHHHHHHHcCChHHHHHHHhcCCCCCCCCCCCCCccccCcccchhh
Q 006251 179 GGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTS 258 (654)
Q Consensus 179 ~GH~gsslg~vel~~aL~~v~~~p~Dr~I~s~GH~aY~~~~l~Gr~~~l~~lrq~ggl~G~p~~~es~~~~fg~G~lG~~ 258 (654)
+||+|++||++|++++||++|+.||||||+|+||++|++++++|++++|.+||+.++++|||.+.+++++.+++|++|++
T Consensus 1 ~gh~g~~ls~~~i~~~L~~~~~~~rDr~ils~gH~~~~~~~~~g~~~~l~~~~~~~~~~g~p~~~~~~~~~~~~G~lG~g 80 (195)
T cd02007 1 GGHLGSNLGVVELTLALHYVFDSPKDKIIWDVGHQAYPHKILTGRRDQFHTLRQYGGLSGFTKRSESEYDAFGTGHSSTS 80 (195)
T ss_pred CCCCCcchhHHHHHHHHHHhcCCCCCeEEEecccHHHHHHHHHCCHHHHhhhhcCCCCCCCCcCCCCCCceECCCchhhh
Confidence 69999999999999999988888999999999999999999999989999999999999999988888999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCchhhhhHHHH
Q 006251 259 ISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALS 338 (654)
Q Consensus 259 is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~vgals~~l~ 338 (654)
+|+|+|+|+|.|+++++++|||++|||+++||++|||+++|+++++|+++||+||++++ ++++.+
T Consensus 81 l~~A~G~Ala~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~vvdnN~~~~------~~~~~~--------- 145 (195)
T cd02007 81 ISAALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDNEMSI------SPNVGT--------- 145 (195)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEEcccccccChHHHHHHHHHHhCCCEEEEEECCCccc------CCCCCC---------
Confidence 99999999999999999999999999999999999999999999999999999999643 111110
Q ss_pred HhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHHHHhHhCCC
Q 006251 339 KLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPA 418 (654)
Q Consensus 339 ~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al~~ak~~~~ 418 (654)
. ..+|+++||+++.++||||++++.++++++++ .
T Consensus 146 ----------------------------~----------------~~~~~a~G~~~~~~vdG~d~~~l~~a~~~a~~--~ 179 (195)
T cd02007 146 ----------------------------P----------------GNLFEELGFRYIGPVDGHNIEALIKVLKEVKD--L 179 (195)
T ss_pred ----------------------------H----------------HHHHHhcCCCccceECCCCHHHHHHHHHHHHh--C
Confidence 1 12388999999866899999999999999886 3
Q ss_pred CCCEEEEEEeecCCCC
Q 006251 419 PGPVLIHVVTEKGKGY 434 (654)
Q Consensus 419 ~gP~lI~v~T~KG~G~ 434 (654)
++|++|+++|.||+||
T Consensus 180 ~~P~~I~~~T~kg~g~ 195 (195)
T cd02007 180 KGPVLLHVVTKKGKGY 195 (195)
T ss_pred CCCEEEEEEEecccCc
Confidence 7899999999999997
No 25
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=100.00 E-value=1.8e-43 Score=376.23 Aligned_cols=232 Identities=31% Similarity=0.517 Sum_probs=188.2
Q ss_pred HHHHHHHHHHHHHHhhc-cCCCCCCCccHHHHHHHHHh-hcC----CC----CcEEEecCCchH---HHHHHHcCC---h
Q 006251 161 EQLAAELRADIVNSVSK-TGGHLSANLGVVELTLALHR-VFN----TP----DDKIIWDVGHQA---YVHKILTGR---R 224 (654)
Q Consensus 161 ~~la~~lR~~il~~v~~-~~GH~gsslg~vel~~aL~~-v~~----~p----~Dr~I~s~GH~a---Y~~~~l~Gr---~ 224 (654)
+++|++||..+++|+.+ ++||+|++||++|++++||. +++ +| |||||+|+||++ |+.+.+.|. .
T Consensus 2 ~~~a~~iR~~~~~~~~~a~sGH~G~~ls~a~i~~~Ly~~~l~~~p~~p~~~~rDrfvlSkGH~~~~lYa~l~~~G~~~~~ 81 (332)
T PF00456_consen 2 KRIANTIRKLILDMVQKAGSGHPGSSLSAADILYALYFKVLRYDPKNPKWPNRDRFVLSKGHASPALYAILALRGYDLSE 81 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHT-S-SHHHHHHHHHHHHHHHHT-BBBTTBTTSTTS-EEEESSGGGHHHHHHHHHHTTSSS-H
T ss_pred hHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHhhccccCCccccCCCCCcEEEeccchhHHHHHHHHHhcCCCCH
Confidence 57899999999999986 89999999999999999986 333 23 799999999998 999999997 3
Q ss_pred HHHHHHHhcCC-CCCCCCCCCCCccccCcccchhhHHHHHHHHHHHHHcC----------CCCeEEEEEcCCCcccchHH
Q 006251 225 SRMNTMRKTSG-LAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILG----------KNNNVISVIGDGAMTAGQAY 293 (654)
Q Consensus 225 ~~l~~lrq~gg-l~G~p~~~es~~~~fg~G~lG~~is~AlGmAlA~kl~g----------~~~~VvaviGDGal~eG~~~ 293 (654)
++|.+||+.++ ++|||++...+++++++|++|+|+++|+|||+|.|+++ .+++|||++|||+++||++|
T Consensus 82 ~~L~~fr~~~s~~~gHP~~~~~~gie~stGsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDGel~EG~~~ 161 (332)
T PF00456_consen 82 EDLKTFRQLGSRLPGHPEYGKTPGIEASTGSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGDGELQEGSVW 161 (332)
T ss_dssp HHHTTTTSTTSSSSSSTTTTTSTT-SS--SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEHHHHHSHHHH
T ss_pred HHHHHhccCCCCCCCCCcccCCceeEeeccchhcchhhHHHHHHHHHHHHhhhcccccccccceEEEEecCccccchhhH
Confidence 78889999987 89999987789999999999999999999999998753 36899999999999999999
Q ss_pred HHHHHHhhcC-CCEEEEEECCCCCcccccccCCCCCchhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHH
Q 006251 294 EAMNNAGFLD-ANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVD 372 (654)
Q Consensus 294 EAln~A~~~~-lnLi~Il~dN~~~s~pt~~~~g~~~~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~ 372 (654)
||+.+|++++ .||++|+|+|+.+ +||.+..+. .+++.+|
T Consensus 162 EA~~~A~~~~L~nLi~i~D~N~~q------~dg~~~~~~--------------------------------~~~~~~k-- 201 (332)
T PF00456_consen 162 EAASLAGHYKLDNLIVIYDSNGIQ------IDGPTDIVF--------------------------------SEDIAKK-- 201 (332)
T ss_dssp HHHHHHHHTT-TTEEEEEEEESEE------TTEEGGGTH--------------------------------HSHHHHH--
T ss_pred HHHHHHHHhCCCCEEEEEecCCcc------cCCCccccc--------------------------------chHHHHH--
Confidence 9999999986 6899999999853 355443210 1344444
Q ss_pred HHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHHHHhHhCCCCCCEEEEEEeecCCCCChhhcCcccccccc
Q 006251 373 EYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVV 448 (654)
Q Consensus 373 ~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al~~ak~~~~~gP~lI~v~T~KG~G~~~ae~~~~~~Hg~~ 448 (654)
|++|||+++.++||||+++|.+|+++++.. .++|++|+++|+||+|+|.+|+. .+||+.+
T Consensus 202 --------------~~a~Gw~v~~v~dGhd~~~i~~A~~~a~~~-~~kP~~Ii~~TvkG~G~~~~e~~-~~~Hg~~ 261 (332)
T PF00456_consen 202 --------------FEAFGWNVIEVCDGHDVEAIYAAIEEAKAS-KGKPTVIIARTVKGKGVPFMEGT-AKWHGSP 261 (332)
T ss_dssp --------------HHHTT-EEEEEEETTBHHHHHHHHHHHHHS-TSS-EEEEEEE-TTTTSTTTTTS-GGGTSS-
T ss_pred --------------HHHhhhhhcccccCcHHHHHHHHHHHHHhc-CCCCceeecceEEecCchhhccc-chhhccC
Confidence 999999999444999999999999999875 37999999999999999999865 6899975
No 26
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.8e-42 Score=351.23 Aligned_cols=184 Identities=34% Similarity=0.544 Sum_probs=172.9
Q ss_pred chhHHHHHHHHHHHHHhhCCcEEEEecCccCCCChhhHHHhCCCCccccchhHHHHHHHHHHHHhcCCeeEEeehHHHHH
Q 006251 464 TLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQ 543 (654)
Q Consensus 464 ~~s~~~a~~~aL~~~~~~d~~vvvl~aDlg~s~~l~~f~~~fp~R~id~GIaE~~mvg~AaGlA~~G~~Pi~~tfa~Fl~ 543 (654)
..+++++|++.|.++.++|+++|++++|+.+|+++..|.++||+||+|+||+||+|+|+|+|||+.|++||+++|+.|+.
T Consensus 6 ~~~~R~~~g~~L~~l~~~~~diVvl~ADl~~St~~~~f~~~fPdR~~NvGIaEQ~mvg~AAGLA~~Gk~Pfv~tfa~F~s 85 (312)
T COG3958 6 TESLRKVYGETLAELGRKNSDIVVLDADLSSSTKTGYFAKEFPDRFFNVGIAEQDMVGTAAGLALAGKKPFVSTFAAFLS 85 (312)
T ss_pred chHHHHHHHHHHHHHHhcCCCEEEEecccccccchhHHHHhCchhheecchHHHHHHHHHHHHHhcCCCceeechHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred -hHHHHHHHhhhcCCCCEEEEEecCCc-cCCCCCCCCChhhHHHHhcCCCCEEEecCCHHHHHHHHHHHHhCCCCcEEEE
Q 006251 544 -RGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFR 621 (654)
Q Consensus 544 -ra~dQI~~~~a~~~lpV~~v~~~~G~-~g~dG~tHq~~edla~~r~iPnl~V~~PsD~~E~~~ll~~al~~~~~P~~ir 621 (654)
|+||||++++|++++||+++++|+|+ .|+||+|||.+||+++||.||||+|++|+|+.+++.++.+++ ..++|+|+|
T Consensus 86 ~Ra~EQir~~iay~~lnVKiv~t~~G~t~g~dG~sHq~~EDiaimR~lpn~~V~~P~D~v~~~~i~~~~~-~~~GP~Y~R 164 (312)
T COG3958 86 RRAWEQIRNSIAYNNLNVKIVATHAGVTYGEDGSSHQALEDIAIMRGLPNMTVIAPADAVETRAILDQIA-DYKGPVYMR 164 (312)
T ss_pred HHHHHHHHHHhhhccCCeEEEEecCCcccCCCCccchhHHHHHHHhcCCCceEEccCcHHHHHHHHHHHH-hcCCCEEEE
Confidence 99999999999999999999999999 689999999999999999999999999999999999999996 578999999
Q ss_pred ecCCCCCCccCCCCCCCCCcccCceEEecc
Q 006251 622 FPRGNGIGAVLPPNNKGTPLETSLDSWPMS 651 (654)
Q Consensus 622 ~~r~~~~~~~~p~~~~~~~~~iGKa~vi~~ 651 (654)
+.|...+. .++ .++|+|++||++++++
T Consensus 165 l~R~~~p~-~~~--~~~~~F~iGka~vLrd 191 (312)
T COG3958 165 LGRGKVPV-VVD--EGGYTFEIGKANVLRD 191 (312)
T ss_pred ecCCCCCc-eec--CCCceEeccceeEeec
Confidence 99987543 232 2359999999999885
No 27
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=100.00 E-value=7.4e-41 Score=357.90 Aligned_cols=230 Identities=23% Similarity=0.329 Sum_probs=196.0
Q ss_pred HHHHHHHHHHHHHHhhc-cC------CCCCCCccHHHHHHHHHh-hcCC-----CCcEEEecCCchH---HHHHHHcCC-
Q 006251 161 EQLAAELRADIVNSVSK-TG------GHLSANLGVVELTLALHR-VFNT-----PDDKIIWDVGHQA---YVHKILTGR- 223 (654)
Q Consensus 161 ~~la~~lR~~il~~v~~-~~------GH~gsslg~vel~~aL~~-v~~~-----p~Dr~I~s~GH~a---Y~~~~l~Gr- 223 (654)
+++.+.+|+.+++|+.+ .+ ||+|+++|+++++++||+ +++. ++|| |+|+||++ |++++++|+
T Consensus 5 ~~~~~~iR~~i~~mv~~a~s~~~~~gGH~G~slS~adI~~aLy~~~l~~~p~~~~RDR-vlSkGHas~~lYA~L~l~G~~ 83 (386)
T cd02017 5 RRIRSLIRWNAMAMVHRANKKDLGIGGHIATFASAATLYEVGFNHFFRARGEGGGGDL-VYFQGHASPGIYARAFLEGRL 83 (386)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcccCCCCCcchhHHHHHHHHHHHhcCCCCCCCCCCE-EEeCCcccHHHHHHHHHcCCC
Confidence 45568999999999976 43 999999999999999984 5652 3899 77899999 999999997
Q ss_pred -hHHHHHHHhcCC---CCCCCCCCCCCc-cccCcccchhhHHHHHHHHHHHHH-------cCCCCeEEEEEcCCCcccch
Q 006251 224 -RSRMNTMRKTSG---LAGFPKREESVH-DAFGAGHSSTSISAGLGMAVARDI-------LGKNNNVISVIGDGAMTAGQ 291 (654)
Q Consensus 224 -~~~l~~lrq~gg---l~G~p~~~es~~-~~fg~G~lG~~is~AlGmAlA~kl-------~g~~~~VvaviGDGal~eG~ 291 (654)
.++|.+|||.++ +++||++...++ .++++|++|+|+++|+|||+|.|+ .+.+++|||++|||+++||+
T Consensus 84 ~~edL~~fr~~gs~p~l~g~p~~~~~~~gve~sTGSLGqGLs~AvGmAla~r~l~a~~~~~~~~~rvyvllGDGEl~EG~ 163 (386)
T cd02017 84 TEEQLDNFRQEVGGGGLSSYPHPWLMPDFWEFPTVSMGLGPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDGEMDEPE 163 (386)
T ss_pred CHHHHHhhccCCCCCCCCCCCCCCCCCCCeeeCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcccccccHH
Confidence 488999999988 899998866554 888999999999999999999998 56789999999999999999
Q ss_pred HHHHHHHHhhcC-CCEEEEEECCCCCcccccccCCCCCchhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHH
Q 006251 292 AYEAMNNAGFLD-ANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAK 370 (654)
Q Consensus 292 ~~EAln~A~~~~-lnLi~Il~dN~~~s~pt~~~~g~~~~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k 370 (654)
+|||+++|+.++ .||++|+|+|+++ ++|.+..++. ..+++.+|
T Consensus 164 vwEA~~~Ag~~kL~NLivIvD~N~~q------idG~t~~v~~------------------------------~~e~l~~k 207 (386)
T cd02017 164 SLGAIGLAAREKLDNLIFVVNCNLQR------LDGPVRGNGK------------------------------IIQELEGI 207 (386)
T ss_pred HHHHHHHHHHhCCCCEEEEEECCCCc------cCCccccccc------------------------------CchhHHHH
Confidence 999999999986 6999999999964 3666554321 12556666
Q ss_pred HHHHhhhccCCChhhhhhhcCCeEEeecC---------------------------------------------------
Q 006251 371 VDEYARGLISASGSTFFEELGLYYIGPVD--------------------------------------------------- 399 (654)
Q Consensus 371 ~~~~~r~~~~~~~~~lfea~G~~~ig~vD--------------------------------------------------- 399 (654)
|++|||+++ .||
T Consensus 208 ----------------f~AfGW~vi-~V~~g~~~~~~f~~~gg~~l~~~~~~~~~~~~~~l~~~~~~~~r~~l~~~~~~~ 270 (386)
T cd02017 208 ----------------FRGAGWNVI-KVIWGSKWDELLAKDGGGALRQRMEETVDGDYQTLKAKDGAYVREHFFGKYPEL 270 (386)
T ss_pred ----------------HHhcCCEEE-EEecCCcchhhhccCcchHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHH
Confidence 999999999 787
Q ss_pred ------------------CCCHHHHHHHHHHhHhCCCCCCEEEEEEeecCCCCCh-hhcCcccccc
Q 006251 400 ------------------GHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPP-AEAAADRMHG 446 (654)
Q Consensus 400 ------------------GhDi~~L~~al~~ak~~~~~gP~lI~v~T~KG~G~~~-ae~~~~~~Hg 446 (654)
|||+++|.+||++++.. ..+|++|+++|+||+|.+. +|+. ..||+
T Consensus 271 ~~~~~~~~d~~~~~~~~gGhD~~~i~~A~~~a~~~-~~kPt~Iia~TikG~G~~~~~e~~-~~~h~ 334 (386)
T cd02017 271 KALVTDLSDEDLWALNRGGHDPRKVYAAYKKAVEH-KGKPTVILAKTIKGYGLGAAGEGR-NHAHQ 334 (386)
T ss_pred HHHhhcccHHhhhhhccCCCCHHHHHHHHHHHHhC-CCCCeEEEEeCeecCCCChhccCC-cchhc
Confidence 99999999999998864 3689999999999999984 6654 57886
No 28
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=100.00 E-value=6.2e-39 Score=331.20 Aligned_cols=228 Identities=30% Similarity=0.495 Sum_probs=193.6
Q ss_pred HHHHHHHHHHhhc-cCCCCCCCccHHHHHHHHHhh-cC--------CCCcEEEecCCchH---HHHHHHcCC--hHHHHH
Q 006251 165 AELRADIVNSVSK-TGGHLSANLGVVELTLALHRV-FN--------TPDDKIIWDVGHQA---YVHKILTGR--RSRMNT 229 (654)
Q Consensus 165 ~~lR~~il~~v~~-~~GH~gsslg~vel~~aL~~v-~~--------~p~Dr~I~s~GH~a---Y~~~~l~Gr--~~~l~~ 229 (654)
+++|+.+++|+.+ ++||+++++|++|++++||+. ++ .++||||+|+||++ |++++++|+ .++|.+
T Consensus 1 ~~~R~~~~~~~~~~~~gh~g~~~s~~~i~~~L~~~~~~~~~~~~~~~~rd~~v~s~gH~~~~~ya~l~~~g~~~~~~l~~ 80 (255)
T cd02012 1 NRIRRLSIDMVQKAGSGHPGGSLSAADILAVLYFKVLKYDPADPKWPNRDRFVLSKGHASPALYAVLALAGYLPEEDLKT 80 (255)
T ss_pred ChHHHHHHHHHHhcCCCCcCccHHHHHHHHHHHHHHhCcCCcCCCCCCCCeEEEcCCcHHHHHHHHHHHcCCCCHHHHHH
Confidence 3689999999976 789999999999999999864 32 13799999999998 778899997 488999
Q ss_pred HHhcCC-CCCCCCCCCCCccccCcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCC-CEE
Q 006251 230 MRKTSG-LAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDA-NLI 307 (654)
Q Consensus 230 lrq~gg-l~G~p~~~es~~~~fg~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~l-nLi 307 (654)
||+.++ ++|||.+..++++.+++|++|+++|+|+|+|+|.++++++++|||++|||++++|++||++++|+.+++ |++
T Consensus 81 ~~~~gs~l~gh~~~~~~~g~~~~~GslG~gl~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~eal~~a~~~~l~~li 160 (255)
T cd02012 81 FRQLGSRLPGHPEYGLTPGVEVTTGSLGQGLSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLI 160 (255)
T ss_pred hcccCCCCCCCCCCCCCCCeeeCCcchhhHHHHHHHHHHHHHHhCCCCEEEEEECcccccccHHHHHHHHHHHcCCCcEE
Confidence 999986 999999888889899999999999999999999999999999999999999999999999999999986 599
Q ss_pred EEEECCCCCcccccccCCCCCchhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhh
Q 006251 308 VVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFF 387 (654)
Q Consensus 308 ~Il~dN~~~s~pt~~~~g~~~~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lf 387 (654)
+|+|||++.+ ++..... + ...++. .+|
T Consensus 161 ~vvdnN~~~~------~~~~~~~--~-----------------------------~~~~~~----------------~~~ 187 (255)
T cd02012 161 AIVDSNRIQI------DGPTDDI--L-----------------------------FTEDLA----------------KKF 187 (255)
T ss_pred EEEECCCccc------cCcHhhc--c-----------------------------CchhHH----------------HHH
Confidence 9999998643 1111000 0 012233 349
Q ss_pred hhcCCeEEeecCCCCHHHHHHHHHHhHhCCCCCCEEEEEEeecCCCCChhhcCcccccccc
Q 006251 388 EELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVV 448 (654)
Q Consensus 388 ea~G~~~ig~vDGhDi~~L~~al~~ak~~~~~gP~lI~v~T~KG~G~~~ae~~~~~~Hg~~ 448 (654)
++|||+++ .|||||+++|.++++++++. .++|++|+++|.||+|++++|+ ..+||+.+
T Consensus 188 ~a~G~~~~-~v~G~d~~~l~~al~~a~~~-~~~P~~I~~~t~kg~g~~~~e~-~~~~H~~~ 245 (255)
T cd02012 188 EAFGWNVI-EVDGHDVEEILAALEEAKKS-KGKPTLIIAKTIKGKGVPFMEN-TAKWHGKP 245 (255)
T ss_pred HHcCCeEE-EECCCCHHHHHHHHHHHHHc-CCCCEEEEEEeecccccCccCC-CccccCCC
Confidence 99999998 89999999999999998864 2689999999999999999985 56889765
No 29
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=100.00 E-value=5.2e-37 Score=294.65 Aligned_cols=154 Identities=51% Similarity=0.847 Sum_probs=147.8
Q ss_pred HHHHHHHHHHhhCCcEEEEecCccCCCChhhHHHhCCCCccccchhHHHHHHHHHHHHhcCCeeEEeehHHHHHhHHHHH
Q 006251 470 YFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQV 549 (654)
Q Consensus 470 a~~~aL~~~~~~d~~vvvl~aDlg~s~~l~~f~~~fp~R~id~GIaE~~mvg~AaGlA~~G~~Pi~~tfa~Fl~ra~dQI 549 (654)
+++++|.+++++|++++++++|++.+.++++|+++||+|++|+||+||+|+|+|+|||+.|++||+++|+.|++|++|||
T Consensus 2 ~~~~~l~~~~~~~~~~v~~~~Dl~~~~~~~~~~~~~p~r~i~~gIaE~~~vg~A~GlA~~G~~pi~~~~~~f~~ra~dqi 81 (156)
T cd07033 2 AFGEALLELAKKDPRIVALSADLGGSTGLDKFAKKFPDRFIDVGIAEQNMVGIAAGLALHGLKPFVSTFSFFLQRAYDQI 81 (156)
T ss_pred hHHHHHHHHHhhCCCEEEEECCCCCCCCcHHHHHhCCCCeEEeChhHHHHHHHHHHHHHCCCeEEEEECHHHHHHHHHHH
Confidence 68899999999999999999999988889999999999999999999999999999999999999999988899999999
Q ss_pred HHhhhcCCCCEEEEEecCCc-cCCCCCCCCChhhHHHHhcCCCCEEEecCCHHHHHHHHHHHHhCCCCcEEEEecC
Q 006251 550 VHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPR 624 (654)
Q Consensus 550 ~~~~a~~~lpV~~v~~~~G~-~g~dG~tHq~~edla~~r~iPnl~V~~PsD~~E~~~ll~~al~~~~~P~~ir~~r 624 (654)
+++++++++||+++++++|+ .|++|+|||+.+|++++|++||++|++|+|+.|++++++++++ +++|+|||++|
T Consensus 82 ~~~~a~~~~pv~~~~~~~g~~~~~~G~tH~~~~~~a~~~~iPg~~v~~Ps~~~~~~~ll~~a~~-~~~P~~irl~~ 156 (156)
T cd07033 82 RHDVALQNLPVKFVGTHAGISVGEDGPTHQGIEDIALLRAIPNMTVLRPADANETAAALEAALE-YDGPVYIRLPR 156 (156)
T ss_pred HHHHhccCCCeEEEEECCcEecCCCCcccchHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHh-CCCCEEEEeeC
Confidence 99999999999999999988 4689999999999999999999999999999999999999985 67899999987
No 30
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=100.00 E-value=9e-35 Score=340.78 Aligned_cols=416 Identities=17% Similarity=0.198 Sum_probs=287.1
Q ss_pred CCCHHHHHHHHHHH-HHHHHH--Hhhc-cCCCCCCCccHHHHHHHHHhhcC-----CCCcEEEecCCchHHHHHHH--cC
Q 006251 154 NLSTEDLEQLAAEL-RADIVN--SVSK-TGGHLSANLGVVELTLALHRVFN-----TPDDKIIWDVGHQAYVHKIL--TG 222 (654)
Q Consensus 154 ~l~~~~L~~la~~l-R~~il~--~v~~-~~GH~gsslg~vel~~aL~~v~~-----~p~Dr~I~s~GH~aY~~~~l--~G 222 (654)
.++.+++.++-+.+ |.+..+ +..+ .++-..+.-|+..+.++|..+++ .++|.++- ..|+...+.+. .|
T Consensus 185 ~~s~e~~~~il~~m~~~r~fE~fl~~~f~~~Krf~~eG~Ea~i~gl~~li~~a~~lg~~D~vig-maHRgrlnvLa~v~G 263 (924)
T PRK09404 185 SFSAEEKKAILERLTAAEGFERFLHTKFVGQKRFSLEGGESLIPMLDEIIRRAGKLGVKEIVIG-MAHRGRLNVLVNVLG 263 (924)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccchhhHHHHHHHHHHHHHhCCCCCEEEe-cCcCchHHHHHHhcC
Confidence 67777777665433 444333 2233 44544467888777666654322 35786664 22554335444 36
Q ss_pred C--hHHHHHHHhc--------CC-CC---CCCC----CCCCCcc--ccCcccchhhHHHHHHHHHHHHHcCCC------C
Q 006251 223 R--RSRMNTMRKT--------SG-LA---GFPK----REESVHD--AFGAGHSSTSISAGLGMAVARDILGKN------N 276 (654)
Q Consensus 223 r--~~~l~~lrq~--------gg-l~---G~p~----~~es~~~--~fg~G~lG~~is~AlGmAlA~kl~g~~------~ 276 (654)
. ++.|.+|... +| .. |++. +..+.+. .+-.+|+|...|+|+|+|.|.++++.+ .
T Consensus 264 ~~~~~ifaEf~Gk~~~~~~~~~GdvkyHlG~~~~~~g~gg~mhi~l~~npShleav~Pva~G~A~A~q~~~~~~~~~~~~ 343 (924)
T PRK09404 264 KPPRDLFAEFEGKHGPDEVLGSGDVKYHLGFSSDRETDGGEVHLSLAFNPSHLEIVNPVVEGSVRARQDRRGDGQDRKKV 343 (924)
T ss_pred CCHHHHHHHHcCCCCCCCCCCCCCcccccCccccccCCCCeeEeeccCCccccccccCeehhHHHHHHHhcCCcccccce
Confidence 5 3555666221 11 00 1121 0111221 112488999999999999999998877 7
Q ss_pred eEEEEEcCCCc-ccchHHHHHHHHhhcCCC---EEEEEECCCCCc-ccccccCCCCCchhhhhHHHHHhhhchhHHHHHH
Q 006251 277 NVISVIGDGAM-TAGQAYEAMNNAGFLDAN---LIVVLNDNKQVS-LPTATLDGPATPVGALSSALSKLQASTNFRKLRE 351 (654)
Q Consensus 277 ~VvaviGDGal-~eG~~~EAln~A~~~~ln---Li~Il~dN~~~s-~pt~~~~g~~~~vgals~~l~~~~~~~~~~~~r~ 351 (654)
.+||++|||++ .+|.+||+||+|+.|++| +|+||+||++.. +|.... .+
T Consensus 344 v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveNNq~g~tT~~~~~--~s------------------------ 397 (924)
T PRK09404 344 LPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQIGFTTSPPDD--RS------------------------ 397 (924)
T ss_pred EEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEeeCHHHh--cc------------------------
Confidence 89999999998 799999999999999987 999999998643 222110 00
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHHHHhHh--CCCCCCEEEEEEee
Q 006251 352 AAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKE--MPAPGPVLIHVVTE 429 (654)
Q Consensus 352 ~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al~~ak~--~~~~gP~lI~v~T~ 429 (654)
.....+ +++++|++.+ .|||+|+++++.+++.|.+ ...+||++|++.|+
T Consensus 398 ------------~~~~sd----------------~Ak~~giP~~-~VDG~D~~AV~~a~~~A~e~~r~g~gPvlIE~~tY 448 (924)
T PRK09404 398 ------------TPYCTD----------------VAKMVQAPIF-HVNGDDPEAVVFATRLALEYRQKFKKDVVIDLVCY 448 (924)
T ss_pred ------------chhHHH----------------HHeecCCcEE-EEcCCCHHHHHHHHHHHHHHHHhcCcCEEEEEEEe
Confidence 011122 3789999998 8999999999999887654 24689999999999
Q ss_pred cCCCCChhhcCc-------ccc--cccc--C----------CC--------------------------C----------
Q 006251 430 KGKGYPPAEAAA-------DRM--HGVV--K----------FD--------------------------P---------- 452 (654)
Q Consensus 430 KG~G~~~ae~~~-------~~~--Hg~~--~----------f~--------------------------~---------- 452 (654)
+-+|+...+... ..| |.-+ . ++ +
T Consensus 449 R~~GHne~D~p~yr~p~ey~~~~~~~dpi~~~~~~Li~~G~lt~~e~~~i~~~~~~~v~~a~~~A~~~~~~~~~~~~~~~ 528 (924)
T PRK09404 449 RRHGHNEGDEPSFTQPLMYKKIKKHPTTRELYADKLVAEGVITEEEADEMVNEYRDALDAGFEVVKEWRPADWLAGDWSP 528 (924)
T ss_pred cCCCCCCCCCCcCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccccc
Confidence 999996533110 011 1100 0 00 0
Q ss_pred ----------ccccc-------------ccC--------------------CCCchhHHHHHHHHHHHHHhhCCcEEEEe
Q 006251 453 ----------KTGKQ-------------FKT--------------------KSPTLTYTQYFAESLIKEAETDDKIVAIH 489 (654)
Q Consensus 453 ----------~tg~~-------------~~~--------------------~~~~~s~~~a~~~aL~~~~~~d~~vvvl~ 489 (654)
.|+-+ .+. ..+..+|..+...++..+|++|++|++++
T Consensus 529 ~~~~~~~~~~~t~v~~~~l~~~~~~~~~~P~~f~~h~~~~k~~~~R~~~~~~~~~idw~~Ae~lA~~s~l~~~~~v~l~G 608 (924)
T PRK09404 529 YLGHEWDDPVDTGVPLERLKELAEKLTTVPEGFKVHPKVKKILEDRREMAEGEKPIDWGMAEALAFASLLDEGYPVRLSG 608 (924)
T ss_pred ccccccccccCCCCCHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 01100 000 01224688888889999999999999999
Q ss_pred cCccCCC--------------C----hhhHHHhC-CCCccccchhHHHHHHHHHHHHhcCCee--EEee-hHHHHH---h
Q 006251 490 AAMGGGT--------------G----LNYFQKRF-PDRCFDVGIAEQHAVTFAAGLASEGVKP--FCAI-YSSFLQ---R 544 (654)
Q Consensus 490 aDlg~s~--------------~----l~~f~~~f-p~R~id~GIaE~~mvg~AaGlA~~G~~P--i~~t-fa~Fl~---r 544 (654)
+|++.++ + +++|.++| +.|++|++|+|.+++|++.|+|+.|++| |+++ |.+|+. .
T Consensus 609 eDv~rgtFshRHavl~dq~~gg~~~~~~~l~~~~g~~rV~nsplsE~~~~G~~~G~a~~g~~~l~i~E~qfgDF~~~AQ~ 688 (924)
T PRK09404 609 QDSGRGTFSHRHAVLHDQKTGETYIPLNHLSEGQASFEVYDSPLSEEAVLGFEYGYSTAEPNTLVIWEAQFGDFANGAQV 688 (924)
T ss_pred eeCCCCcccccchhccccCCCCEeccccchhhhcCCceEecCcchHHHHHHHHHHHHhcCCCCceEEEEeccccccchHH
Confidence 9997532 1 47888999 9999999999999999999999999964 9999 999984 7
Q ss_pred HHHHHHHhh-hcC--CCCEEEEEecCCccCCCCCCCCChhhHHHHhcC--CCCEEEecCCHHHHHHHHHHHHhCCC-CcE
Q 006251 545 GYDQVVHDV-DLQ--KLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCL--PNMVVMAPSDEAELMHMVATAAVIDD-RPS 618 (654)
Q Consensus 545 a~dQI~~~~-a~~--~lpV~~v~~~~G~~g~dG~tHq~~edla~~r~i--Pnl~V~~PsD~~E~~~ll~~al~~~~-~P~ 618 (654)
++||+++.+ ++. ..++++++++++ .|..+..||+..+ +++.+. |||+|+.|++|.+++++|+.++.+++ +|+
T Consensus 689 ~~Dq~i~~~~~k~~~~sglv~~~p~G~-~g~g~~hsS~~~E-~~l~~~~~~gl~Vv~pstpad~~~lLr~q~~r~~r~Pv 766 (924)
T PRK09404 689 VIDQFISSGEQKWGRLSGLVMLLPHGY-EGQGPEHSSARLE-RFLQLCAEDNMQVCNPTTPAQYFHLLRRQALRPFRKPL 766 (924)
T ss_pred HHHHHHHHHHHHhcCccCeEEEecCcC-CCCChhhhccCHH-HHHHhCCCCCCEEEecCCHHHHHHHHHHHHhhCCCCCE
Confidence 799998885 543 467888877764 3443444555666 688666 69999999999999999998754564 999
Q ss_pred EEEecCCCC
Q 006251 619 CFRFPRGNG 627 (654)
Q Consensus 619 ~ir~~r~~~ 627 (654)
+|.+||..+
T Consensus 767 v~~~pK~L~ 775 (924)
T PRK09404 767 VVMTPKSLL 775 (924)
T ss_pred EEeccHHHh
Confidence 999999874
No 31
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=100.00 E-value=7.5e-36 Score=318.51 Aligned_cols=183 Identities=21% Similarity=0.314 Sum_probs=158.8
Q ss_pred chhHHHHHHHHHHHHHhhCCcEEEEecCccCCCC----hhhHHHhC-CCCccccchhHHHHHHHHHHHHhcCCeeEEeeh
Q 006251 464 TLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTG----LNYFQKRF-PDRCFDVGIAEQHAVTFAAGLASEGVKPFCAIY 538 (654)
Q Consensus 464 ~~s~~~a~~~aL~~~~~~d~~vvvl~aDlg~s~~----l~~f~~~f-p~R~id~GIaE~~mvg~AaGlA~~G~~Pi~~tf 538 (654)
+.+|+++|+++|.+++++|++++++++|++.+.+ +++|+++| |+||||+||+||+|+|+|+|||++|++||+++|
T Consensus 3 ~~~~~~a~~~~L~~~~~~d~~iv~l~~d~~~~~g~~~~~~~~~~~fgp~R~~d~gIaE~~~vg~AaGlA~~G~~Piv~~~ 82 (327)
T PRK09212 3 QLTVREALRDAMQEEMERDPKVFLMGEEVGEYQGAYKVTQGLLEQFGPKRVIDTPITEHGFAGLAVGAAFAGLRPIVEFM 82 (327)
T ss_pred cchHHHHHHHHHHHHHHhCCCEEEEcCcccccCCcchhhHHHHHHhCCCceeecchhHHHHHHHHHHHHHcCCeeEEEee
Confidence 4689999999999999999999999999987666 48999999 999999999999999999999999999999997
Q ss_pred H-HHHHhHHHHHHHhhhcCC--------CCEEEEEecCCccCCCCCCCCChhhHHHHhcCCCCEEEecCCHHHHHHHHHH
Q 006251 539 S-SFLQRGYDQVVHDVDLQK--------LPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVAT 609 (654)
Q Consensus 539 a-~Fl~ra~dQI~~~~a~~~--------lpV~~v~~~~G~~g~dG~tHq~~edla~~r~iPnl~V~~PsD~~E~~~ll~~ 609 (654)
+ .|++||||||++++|+++ +||++++.. |..+.+|+|||+..| ++||+||||+|++|+|+.|+++++++
T Consensus 83 ~~~f~~ra~dQi~~d~a~~~~~~~~~~~v~vv~~~~~-g~~~~~G~tH~~~~e-a~~r~iP~l~V~~P~d~~e~~~~l~~ 160 (327)
T PRK09212 83 TFNFSMQAIDQIVNSAAKTNYMSGGQLKCPIVFRGPN-GAAARVAAQHSQCYA-AWYSHIPGLKVVAPYFAADCKGLLKT 160 (327)
T ss_pred hhhHHHHHHHHHHHHHHHHhhccCCCcCccEEEEeCC-CCCCCCCcccccCHH-HHHhcCCCCEEEeeCCHHHHHHHHHH
Confidence 6 788999999999999984 666666543 446789999988777 99999999999999999999999999
Q ss_pred HHhCCCCcEEEEecCCCCCCc-cCCCCCCCCCcccCceEEecc
Q 006251 610 AAVIDDRPSCFRFPRGNGIGA-VLPPNNKGTPLETSLDSWPMS 651 (654)
Q Consensus 610 al~~~~~P~~ir~~r~~~~~~-~~p~~~~~~~~~iGKa~vi~~ 651 (654)
++. +++|+|||++|..+... +++ .+++++++||++|+++
T Consensus 161 a~~-~~~Pv~i~~~~~~~~~~~~~~--~~~~~~~~Gk~~vl~~ 200 (327)
T PRK09212 161 AIR-DPNPVIFLENEILYGHSHEVP--EEEESIPIGKAAILRE 200 (327)
T ss_pred HHh-CCCcEEEEEchhhcCCCCCCC--CCCccccCCeeEEEEe
Confidence 985 68999999987654321 222 2357899999999875
No 32
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=100.00 E-value=9.1e-36 Score=317.68 Aligned_cols=182 Identities=18% Similarity=0.266 Sum_probs=156.4
Q ss_pred chhHHHHHHHHHHHHHhhCCcEEEEecCccCCCC----hhhHHHhCCC-CccccchhHHHHHHHHHHHHhcCCeeEEee-
Q 006251 464 TLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTG----LNYFQKRFPD-RCFDVGIAEQHAVTFAAGLASEGVKPFCAI- 537 (654)
Q Consensus 464 ~~s~~~a~~~aL~~~~~~d~~vvvl~aDlg~s~~----l~~f~~~fp~-R~id~GIaE~~mvg~AaGlA~~G~~Pi~~t- 537 (654)
..+++++|+++|.+++++||+++++++|++.+.+ +++|+++||+ ||||+||+||+|+|+|+|||++|++||+++
T Consensus 3 ~~~~~~a~~~~L~~~~~~dp~iv~l~~d~~~~~g~~~~~~~f~~~fp~~R~~n~gIaEq~~vg~AaGlA~~G~~pvv~~~ 82 (327)
T CHL00144 3 EVFLFEALREAIDEEMARDPRVFVIGEDVGHYGGSYKVTKGLHEKYGDLRVLDTPIAENSFTGMAIGAAMTGLRPIVEGM 82 (327)
T ss_pred cchHHHHHHHHHHHHHhhCCCEEEEeCcccccCCchhHHHHHHHHCCCccEeeccccHHHHHHHHHHHHHCCCEEEEEee
Confidence 3689999999999999999999999999975444 6899999999 999999999999999999999999999996
Q ss_pred hHHHHHhHHHHHHHhhhcC--------CCCEEEEEecCCcc-CCCCCCCCChhhHHHHhcCCCCEEEecCCHHHHHHHHH
Q 006251 538 YSSFLQRGYDQVVHDVDLQ--------KLPVRFAMDRAGLV-GADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVA 608 (654)
Q Consensus 538 fa~Fl~ra~dQI~~~~a~~--------~lpV~~v~~~~G~~-g~dG~tHq~~edla~~r~iPnl~V~~PsD~~E~~~ll~ 608 (654)
|+.|++||||||++++|++ ++||+++ ++|+. +.+|+|||+..+ ++||+||||+|++|+|+.|++++++
T Consensus 83 ~~~f~~ra~dQi~~~~a~~~~~~gg~~~~~vv~~--~~g~~~~~~G~tHs~~~e-a~~~~iPgl~V~~Psd~~d~~~~l~ 159 (327)
T CHL00144 83 NMGFLLLAFNQISNNAGMLHYTSGGNFTIPIVIR--GPGGVGRQLGAEHSQRLE-SYFQSVPGLQIVACSTPYNAKGLLK 159 (327)
T ss_pred hhhHHHHHHHHHHHHHHHHhhccCCCccCCEEEE--ecCCCCCCCCccccccHH-HHHhcCCCCEEEEeCCHHHHHHHHH
Confidence 6788899999999999988 5666666 45554 469999976666 9999999999999999999999999
Q ss_pred HHHhCCCCcEEEEecCCCCC-CccCCCCCCCCCcccCceEEecc
Q 006251 609 TAAVIDDRPSCFRFPRGNGI-GAVLPPNNKGTPLETSLDSWPMS 651 (654)
Q Consensus 609 ~al~~~~~P~~ir~~r~~~~-~~~~p~~~~~~~~~iGKa~vi~~ 651 (654)
+++ +.++|+|||++|..+. +..++ .+++++++||++|+++
T Consensus 160 ~a~-~~~~Pv~ire~~~l~~~~~~v~--~~~~~~~~Gk~~v~~~ 200 (327)
T CHL00144 160 SAI-RSNNPVIFFEHVLLYNLKEEIP--DNEYLLPLEKAEVVRP 200 (327)
T ss_pred HHH-hCCCcEEEEEcHHhcCCCCCCC--CCCccccCCeeEEEEc
Confidence 997 4789999997776543 21233 2457899999999875
No 33
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=100.00 E-value=2.6e-35 Score=317.28 Aligned_cols=184 Identities=20% Similarity=0.306 Sum_probs=158.8
Q ss_pred chhHHHHHHHHHHHHHhhCCcEEEEecCccCCCC----hhhHHHhC-CCCccccchhHHHHHHHHHHHHhcCCeeEEee-
Q 006251 464 TLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTG----LNYFQKRF-PDRCFDVGIAEQHAVTFAAGLASEGVKPFCAI- 537 (654)
Q Consensus 464 ~~s~~~a~~~aL~~~~~~d~~vvvl~aDlg~s~~----l~~f~~~f-p~R~id~GIaE~~mvg~AaGlA~~G~~Pi~~t- 537 (654)
+.+|+++|+++|.+++++|++++++++|++.+.+ +++|.++| |+||||+||+||+|+|+|+|||++|++||+++
T Consensus 26 ~~~~~~a~~~aL~e~~~~d~~iv~i~~D~~~~~g~~~~~~~l~~~~~P~R~~d~GIAEq~~vg~AaGlA~~G~~P~v~~~ 105 (356)
T PLN02683 26 EMTVRDALNSALDEEMSADPKVFIMGEEVGEYQGAYKITKGLLQKYGPDRVLDTPITEAGFTGIGVGAAYAGLKPVVEFM 105 (356)
T ss_pred ccHHHHHHHHHHHHHHhhCcCEEEEccccccccCccchhhhHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEEEe
Confidence 4689999999999999999999999999986555 57888888 99999999999999999999999999999999
Q ss_pred hHHHHHhHHHHHHHhhhcCC--------CCEEEEEecCCccCCCCCCCCChhhHHHHhcCCCCEEEecCCHHHHHHHHHH
Q 006251 538 YSSFLQRGYDQVVHDVDLQK--------LPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVAT 609 (654)
Q Consensus 538 fa~Fl~ra~dQI~~~~a~~~--------lpV~~v~~~~G~~g~dG~tHq~~edla~~r~iPnl~V~~PsD~~E~~~ll~~ 609 (654)
|+.|++||||||++++|+++ +||++++++++..| +|+|||+.+ +++||+||||+|++|+|+.|+++++++
T Consensus 106 ~~~f~~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~G~~~g-~G~tH~~~~-~a~lr~iPnl~V~~Pad~~e~~~~l~~ 183 (356)
T PLN02683 106 TFNFSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAG-VGAQHSQCF-AAWYSSVPGLKVLAPYSSEDARGLLKA 183 (356)
T ss_pred hhhHHHHHHHHHHHHHHHhccccCCCccCCEEEEEeCCCCCC-CCCccccCH-HHHHhcCCCCEEEEeCCHHHHHHHHHH
Confidence 57888999999999999887 99999998844455 699999988 599999999999999999999999999
Q ss_pred HHhCCCCcEEEEecCCCCCCccCCC----CCCCCCcccCceEEecc
Q 006251 610 AAVIDDRPSCFRFPRGNGIGAVLPP----NNKGTPLETSLDSWPMS 651 (654)
Q Consensus 610 al~~~~~P~~ir~~r~~~~~~~~p~----~~~~~~~~iGKa~vi~~ 651 (654)
++ .+++|+|||+++..... .+|. ..+++.+++||++++++
T Consensus 184 a~-~~~gPv~ir~~~~~~~~-~~~~~~~~~~~~~~~~~Gk~~v~r~ 227 (356)
T PLN02683 184 AI-RDPDPVVFLENELLYGE-SFPVSAEVLDSSFVLPIGKAKIERE 227 (356)
T ss_pred HH-hCCCcEEEEEehhhccC-CCCCCCCCCCccccccCCeeEEEEc
Confidence 97 56899999975544211 1111 01247889999999875
No 34
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=100.00 E-value=5.6e-33 Score=306.31 Aligned_cols=480 Identities=21% Similarity=0.289 Sum_probs=335.8
Q ss_pred CCCccccCCCCccccCCCCHHHHHH-HHHHHHHHHHHHhh---c----cCCCCCCCccHHHHHHHHHhh-cCCC-----C
Q 006251 138 PPTPLLDTINYPIHMKNLSTEDLEQ-LAAELRADIVNSVS---K----TGGHLSANLGVVELTLALHRV-FNTP-----D 203 (654)
Q Consensus 138 ~~~~~l~~i~~p~~~~~l~~~~L~~-la~~lR~~il~~v~---~----~~GH~gsslg~vel~~aL~~v-~~~p-----~ 203 (654)
..||+.+||..-....-=-..+|++ +-..+|+.++-||- + .|||++|+-|.+.++.++|.. |+.+ .
T Consensus 55 ~~t~yintip~~~e~~~pgd~~lErrir~~irWna~a~vlRaskk~l~lGGH~aSfaSsatlyev~fnhffr~~~~~~gg 134 (887)
T COG2609 55 TTTDYINTIPTEDEPEYPGDLELERRIRSLIRWNAHAMVLRASKKGLELGGHIASFASSATLYEVGFNHFFRAKSEKDGG 134 (887)
T ss_pred CCCCCcccccccccccCCCcHHHHHHHHHHHHHHHHHHHHHccCCCCCccchhhhhhhHHHHHHHHHHHHhcCcCCCCCC
Confidence 5689999987766544433455664 44678999888773 2 389999999999999999865 4422 4
Q ss_pred cEEEecCCchH---HHHHHHcCC--hHHHHHHHhcC---CCCCCCCCC-CCCccccCcccchhhHHHHHHHHHHHHHc--
Q 006251 204 DKIIWDVGHQA---YVHKILTGR--RSRMNTMRKTS---GLAGFPKRE-ESVHDAFGAGHSSTSISAGLGMAVARDIL-- 272 (654)
Q Consensus 204 Dr~I~s~GH~a---Y~~~~l~Gr--~~~l~~lrq~g---gl~G~p~~~-es~~~~fg~G~lG~~is~AlGmAlA~kl~-- 272 (654)
|++.+ .||.+ |+...|.|| .++|.+|||.. |++++|++. .+....|.++++|-|.-.|+-.|.=.|++
T Consensus 135 DlV~~-qgHaSPg~yArafLeGRlseeqLdnFRqev~g~gl~SYPhp~lmpdfwqFpTvSmGLGp~~aiyqArf~kYL~~ 213 (887)
T COG2609 135 DLVFF-QGHASPGIYARAFLEGRLTEEQLDNFRQEVDGKGLSSYPHPKLMPDFWQFPTVSMGLGPIQAIYQARFLKYLEA 213 (887)
T ss_pred ceEEE-ecCCCchHHHHHHHhccccHHHHHHHHHhccCCCCCCCCCCcCCccccccCcccccccHHHHHHHHHHHHHHHh
Confidence 87665 89998 888999998 58999999973 499999874 45677889999999998998888877764
Q ss_pred -----CCCCeEEEEEcCCCcccchHHHHHHHHhhcC-CCEEEEEECCCCCcccccccCCCCCchhhhhHHHHHhhhchhH
Q 006251 273 -----GKNNNVISVIGDGAMTAGQAYEAMNNAGFLD-ANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNF 346 (654)
Q Consensus 273 -----g~~~~VvaviGDGal~eG~~~EAln~A~~~~-lnLi~Il~dN~~~s~pt~~~~g~~~~vgals~~l~~~~~~~~~ 346 (654)
.++.+||||+|||||.|+...+|+..|+..+ +|++||||.|.|. +||+...-+.+-+.|..++.+.+|
T Consensus 214 RGl~~~~~~~v~afLGDgEmDEpes~gAi~~A~re~LdNlifVincNlQr------LDgpVrgngkiiqelE~~FrgAGW 287 (887)
T COG2609 214 RGLKDTSDQKVWAFLGDGEMDEPESRGAITEAAREKLDNLIFVINCNLQR------LDGPVRGNGKIIQELEGIFRGAGW 287 (887)
T ss_pred cCCcCCCCCeEEEEecCcccCCchhhHHHHHHHHhcCCceEEEEecchhh------cCCcccCCchhHHHHHHHhccCCc
Confidence 2478999999999999999999999999775 7999999999874 688877777777778888777666
Q ss_pred HHHHH----HHHHHHhh-cCCch------------HHHHHHHHHHhhhccCCC-h--hhhhhhcC---CeEEeecCCCCH
Q 006251 347 RKLRE----AAKSITKQ-IGGQT------------HEVAAKVDEYARGLISAS-G--STFFEELG---LYYIGPVDGHNV 403 (654)
Q Consensus 347 ~~~r~----~~k~~~~~-~g~~~------------~~~~~k~~~~~r~~~~~~-~--~~lfea~G---~~~ig~vDGhDi 403 (654)
..++- .-+..+.+ .++-+ ..+..+-=.|+|.-+.+. + .++.+.+- +-.. .--|||+
T Consensus 288 ~VikviWg~~wd~ll~kd~~gkL~~~m~e~~dgdyqt~kakdGayvRehff~~~Pe~~aLVa~~tD~diw~L-~rGGHD~ 366 (887)
T COG2609 288 NVIKVIWGRRWDELLAKDTGGKLRQLMNETVDGDYQTFKAKDGAYVREHFFGRYPETAALVADMTDDDIWAL-NRGGHDP 366 (887)
T ss_pred eEEEEEecccHHHHhcccCcchHHHHHHhcccchhhhhcccccHHHHHHHhccChHHHHHHHhccHHHHHHH-hcCCCCH
Confidence 42100 00000110 01111 111111111233222221 1 11111110 0001 2358999
Q ss_pred HHHHHHHHHhHhCCCCCCEEEEEEeecCCCCChhhcCccccccccCCCC----------------ccccc----------
Q 006251 404 EDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVVKFDP----------------KTGKQ---------- 457 (654)
Q Consensus 404 ~~L~~al~~ak~~~~~gP~lI~v~T~KG~G~~~ae~~~~~~Hg~~~f~~----------------~tg~~---------- 457 (654)
+.|++|+++|...+ ++|++|.++|+||+|.+.+-...+..|.+.|.++ +.++.
T Consensus 367 ~ki~aA~~~A~~~k-g~PtvilA~TIKGyglg~~~eg~n~aHq~kkm~~~~l~~~Rdr~~ipvsd~e~e~lpy~~~g~~s 445 (887)
T COG2609 367 EKVYAAFKKAQEHK-GRPTVILAKTIKGYGLGEAAEGKNIAHQVKKMTPDQLKEFRDRFGIPVSDAELEELPYYHFGEDS 445 (887)
T ss_pred HHHHHHHHHHhcCC-CCceEEEEeeeccccCchhhcccchhhhhhcCCHHHHHHHHhhcCCCCchhhhhcCCcCCCCCCc
Confidence 99999999999873 6899999999999999754333445676643211 00000
Q ss_pred -----------------------c-----cC-----------CCCchhHHHHHHHHHHHHHhhC---CcEEEEecCccCC
Q 006251 458 -----------------------F-----KT-----------KSPTLTYTQYFAESLIKEAETD---DKIVAIHAAMGGG 495 (654)
Q Consensus 458 -----------------------~-----~~-----------~~~~~s~~~a~~~aL~~~~~~d---~~vvvl~aDlg~s 495 (654)
+ .| .....+-+.+|...|.++++++ ++||-+.+|...+
T Consensus 446 ~E~~yl~~rr~al~g~~p~rr~~~t~~l~vP~l~~~~a~~~~~g~~iSTtmAfvr~l~~llkdk~ig~riVpiipDearT 525 (887)
T COG2609 446 PEYKYLHARRAALGGYLPARRPKFTPALPVPSLSDFQALLKGQGEEISTTMAFVRILNELLKDKEIGKRIVPIIPDEART 525 (887)
T ss_pred HHHHHHHHHHHhcCCCCchhcccCCCCccCCcHHHHHHHHhccCccchhHHHHHHHHHHHHhccccCCccccccCchhhh
Confidence 0 00 1224666788999999888843 4688899999988
Q ss_pred CChhhHHH----------hC---------------CCCccccchhHHHHHHH--HHHHHh--cC--CeeEEeehHHH-HH
Q 006251 496 TGLNYFQK----------RF---------------PDRCFDVGIAEQHAVTF--AAGLAS--EG--VKPFCAIYSSF-LQ 543 (654)
Q Consensus 496 ~~l~~f~~----------~f---------------p~R~id~GIaE~~mvg~--AaGlA~--~G--~~Pi~~tfa~F-l~ 543 (654)
+|+.++.. +| .+++++-||.|.+.++. |+|.+. +| ++||.-.|++| ++
T Consensus 526 fgmeg~f~q~GIy~~~GQ~y~p~d~~~~~~ykea~~GQiLqeGInE~ga~~sw~AagtSys~~~~pmiPfyi~YsmFgfq 605 (887)
T COG2609 526 FGMEGLFRQIGIYNPNGQQYTPQDRDQVMYYKEAESGQILQEGINEAGAFASWIAAGTSYSTHGEPMIPFYIYYSMFGFQ 605 (887)
T ss_pred ccchhhhhhcccccCCCccCCccchhhhhhhhhCCCcchHHhhhccccHHHHHHHHhcccccCCccceeeeeeechhhhh
Confidence 88765432 11 37999999999998875 444444 35 68988889999 89
Q ss_pred hHHHHHHHhhhcCCCC-EEEEEecCCc-cCCCCCCCCChhhHHHHhcCCCCEEEecCCHHHHHHHHHHHHhCC------C
Q 006251 544 RGYDQVVHDVDLQKLP-VRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVID------D 615 (654)
Q Consensus 544 ra~dQI~~~~a~~~lp-V~~v~~~~G~-~g~dG~tHq~~edla~~r~iPnl~V~~PsD~~E~~~ll~~al~~~------~ 615 (654)
|..|- .+.+|.|... .++.++.++. ....|.+|+.....-+-..+||+.-|.|+.+.|++-+++..+.+. +
T Consensus 606 RigD~-~waA~dq~ARgFLlgaTagrtTLngEGlqHedghS~l~~~~ip~~~tYdPafayEvAVI~~~g~~rmy~~~qe~ 684 (887)
T COG2609 606 RIGDL-LWAAGDQDARGFLLGATAGRTTLNGEGLQHEDGHSHLQAMTIPNCISYDPAFAYEVAVIMQDGLRRMYGEGQEN 684 (887)
T ss_pred hHHHH-HHHHHhhhhcceeEeecCCCceeCccccccccccchhhhhcCCCccccCchHHHHHHHHHHHHHHHHhccCcCC
Confidence 99996 5888999988 5656666665 344688888755544668899999999999999999999887653 3
Q ss_pred CcEEEEecCCCC
Q 006251 616 RPSCFRFPRGNG 627 (654)
Q Consensus 616 ~P~~ir~~r~~~ 627 (654)
.-.||++.-.++
T Consensus 685 v~yYlt~~ne~~ 696 (887)
T COG2609 685 VFYYITLSNENY 696 (887)
T ss_pred cEEEEEeccCcC
Confidence 346777776654
No 35
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=100.00 E-value=4.8e-35 Score=315.05 Aligned_cols=187 Identities=22% Similarity=0.368 Sum_probs=159.2
Q ss_pred CCCchhHHHHHHHHHHHHHhhCCcEEEEecCcc---CCCC-hhhHHHhC-CCCccccchhHHHHHHHHHHHHhcCCeeEE
Q 006251 461 KSPTLTYTQYFAESLIKEAETDDKIVAIHAAMG---GGTG-LNYFQKRF-PDRCFDVGIAEQHAVTFAAGLASEGVKPFC 535 (654)
Q Consensus 461 ~~~~~s~~~a~~~aL~~~~~~d~~vvvl~aDlg---~s~~-l~~f~~~f-p~R~id~GIaE~~mvg~AaGlA~~G~~Pi~ 535 (654)
.....+|+++|+++|.+++++|++++++++|++ +.++ +++|+++| |+||||+||+||+|+|+|+|||++|++||+
T Consensus 31 ~~~~~~~~~~~~~~L~~~~~~d~~iv~l~~D~~~~G~~~~~~~~f~~~fgP~R~id~GIaEq~~vg~AaGlA~~G~~Pvv 110 (355)
T PTZ00182 31 ATVKMNVREAINSALDEELARDPKVFVLGEDVAQYGGVYKCTKGLLDKYGPDRVFDTPITEQGFAGFAIGAAMNGLRPIA 110 (355)
T ss_pred cccchHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCchhhhHHHHHHhCCCceeecCccHHHHHHHHHHHHhCCCEEEE
Confidence 455788999999999999999999999999997 2233 68999999 999999999999999999999999999999
Q ss_pred ee-hHHHHHhHHHHHHHhhhcC--------CCCEEEEEecCCccCCCCCCCCChhhHHHHhcCCCCEEEecCCHHHHHHH
Q 006251 536 AI-YSSFLQRGYDQVVHDVDLQ--------KLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHM 606 (654)
Q Consensus 536 ~t-fa~Fl~ra~dQI~~~~a~~--------~lpV~~v~~~~G~~g~dG~tHq~~edla~~r~iPnl~V~~PsD~~E~~~l 606 (654)
++ |++|++||+|||++++|++ ++|++++. .+|..|.+|+||++..+ ++||+||||+|++|+|+.|++++
T Consensus 111 ~~~fa~Fl~ra~dQi~~d~a~~~~~~~g~~~v~vv~~~-~~g~~g~~G~tHs~~~e-a~lr~iPn~~V~~Psd~~e~~~~ 188 (355)
T PTZ00182 111 EFMFADFIFPAFDQIVNEAAKYRYMSGGQFDCPIVIRG-PNGAVGHGGAYHSQSFE-AYFAHVPGLKVVAPSDPEDAKGL 188 (355)
T ss_pred EechhhHHHHHHHHHHHHHHHhhcccCCCccCCEEEEe-CCCCCCCCCCcccchHH-HHHhcCCCCEEEeeCCHHHHHHH
Confidence 98 8999999999999999986 45666554 34447889999977777 99999999999999999999999
Q ss_pred HHHHHhCCCCcEEEEecCCCCCC-ccCCCCCCCCCcccCceEEecc
Q 006251 607 VATAAVIDDRPSCFRFPRGNGIG-AVLPPNNKGTPLETSLDSWPMS 651 (654)
Q Consensus 607 l~~al~~~~~P~~ir~~r~~~~~-~~~p~~~~~~~~~iGKa~vi~~ 651 (654)
+++++. +++|+||++||..... ... ...+++++++||++++++
T Consensus 189 l~~a~~-~~~P~~i~~p~~l~r~~~~~-~~~~~~~~~~Gk~~vl~~ 232 (355)
T PTZ00182 189 LKAAIR-DPNPVVFFEPKLLYRESVEV-VPEADYTLPLGKAKVVRE 232 (355)
T ss_pred HHHHHh-CCCcEEEEeehHHhCCCCCC-CCcccccccCCcceEecC
Confidence 999985 6899999988764321 111 112357899999999875
No 36
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=100.00 E-value=1.6e-34 Score=319.78 Aligned_cols=186 Identities=17% Similarity=0.208 Sum_probs=162.4
Q ss_pred CCchhHHHHHHHHHHHHHhhCCcEEEEecCccCCCC----hhhHHHhC-CCCccccchhHHHHHHHHHHHHhcCCeeEEe
Q 006251 462 SPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTG----LNYFQKRF-PDRCFDVGIAEQHAVTFAAGLASEGVKPFCA 536 (654)
Q Consensus 462 ~~~~s~~~a~~~aL~~~~~~d~~vvvl~aDlg~s~~----l~~f~~~f-p~R~id~GIaE~~mvg~AaGlA~~G~~Pi~~ 536 (654)
...++++++|+++|.+++++|++++++++|++.+.+ +++|.++| |+||||+||+||+|+|+|+|||++|++||++
T Consensus 139 ~~~~~~r~a~~~al~~~~~~d~~vv~i~~Dv~~~~ga~~~t~~l~~~fgp~R~id~gIaEq~~vg~AaGlA~~G~rPiv~ 218 (464)
T PRK11892 139 MVTMTVREALRDAMAEEMRRDEDVFVMGEEVAEYQGAYKVTQGLLQEFGARRVIDTPITEHGFAGIGVGAAFAGLKPIVE 218 (464)
T ss_pred ccchHHHHHHHHHHHHHHhhCcCEEEEeCCccccCCccccchHHHHHhCccceeecCccHHHHHHHHHHHHhCCCEEEEE
Confidence 345789999999999999999999999999987666 58999999 9999999999999999999999999999999
Q ss_pred e-hHHHHHhHHHHHHHhhh--------cCCCCEEEEEecCCccCCCCCCCCChhhHHHHhcCCCCEEEecCCHHHHHHHH
Q 006251 537 I-YSSFLQRGYDQVVHDVD--------LQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMV 607 (654)
Q Consensus 537 t-fa~Fl~ra~dQI~~~~a--------~~~lpV~~v~~~~G~~g~dG~tHq~~edla~~r~iPnl~V~~PsD~~E~~~ll 607 (654)
+ +..|++|+||||+|++| ++++||+|++.++|..+ .|+ ||+.+|+++||+||||+|++|+|+.|+++++
T Consensus 219 ~~~~~f~~ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~-~G~-hhs~~d~a~~~~iPgl~V~~P~d~~d~~~ll 296 (464)
T PRK11892 219 FMTFNFAMQAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAAR-VAA-QHSQDYAAWYSHIPGLKVVAPYSAADAKGLL 296 (464)
T ss_pred EehHHHHHHHHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCC-CCC-ccccCHHHHHhhCCCCEEEEeCCHHHHHHHH
Confidence 9 57788999999999999 89999999998877655 777 8889999999999999999999999999999
Q ss_pred HHHHhCCCCcEEEEecCCCCCCc-cCCCCCCCCCcccCceEEecc
Q 006251 608 ATAAVIDDRPSCFRFPRGNGIGA-VLPPNNKGTPLETSLDSWPMS 651 (654)
Q Consensus 608 ~~al~~~~~P~~ir~~r~~~~~~-~~p~~~~~~~~~iGKa~vi~~ 651 (654)
++++ ++++|+||++++..+... .+|.. +++.+++||++|+++
T Consensus 297 ~~ai-~~~~Pv~ile~~~ry~~~~~vp~~-~~~~~~~Gka~v~r~ 339 (464)
T PRK11892 297 KAAI-RDPNPVIFLENEILYGQSFDVPKL-DDFVLPIGKARIHRE 339 (464)
T ss_pred HHHh-hCCCcEEEEechhhcCCCCCCCCc-CCccccCceEEEEEc
Confidence 9997 578999996554432211 23321 357899999999875
No 37
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=100.00 E-value=3.6e-33 Score=326.06 Aligned_cols=336 Identities=14% Similarity=0.110 Sum_probs=249.7
Q ss_pred CcccchhhHHHHHHHHHHHHHcCC------CCeEEEEEcCCCc-ccchHHHHHHHHhhcCCCE---EEEEECCCCCc-cc
Q 006251 251 GAGHSSTSISAGLGMAVARDILGK------NNNVISVIGDGAM-TAGQAYEAMNNAGFLDANL---IVVLNDNKQVS-LP 319 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~------~~~VvaviGDGal-~eG~~~EAln~A~~~~lnL---i~Il~dN~~~s-~p 319 (654)
..+|++...|+|+|+|.|.++++. +..++|++|||++ ++|.+||+||+|+.|++|+ |+||+||++.. ++
T Consensus 313 npSHLeav~Pva~G~ArA~q~~~~~~~~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNqyg~tT~ 392 (929)
T TIGR00239 313 NPSHLEIVSPVVIGSTRARLDRLNDSPESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIGFTTN 392 (929)
T ss_pred CCcccccccchhhhHHHHHHHhcCCcccccceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEEc
Confidence 357899999999999999998765 5688999999997 7999999999999999997 99999998643 22
Q ss_pred ccccCCCCCchhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecC
Q 006251 320 TATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVD 399 (654)
Q Consensus 320 t~~~~g~~~~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vD 399 (654)
... ..+. .... .+++++|++.+ .||
T Consensus 393 ~~~--~~s~------------------------------------~~~s----------------d~Ak~ygiP~~-~VD 417 (929)
T TIGR00239 393 PLD--ARST------------------------------------PYCS----------------DLAKMIQAPIF-HVN 417 (929)
T ss_pred HHH--hcCc------------------------------------cCHH----------------HHheecCCCEE-EEC
Confidence 110 0000 0111 23788999998 899
Q ss_pred CCCHHHHHHHHHHhHh--CCCCCCEEEEEEeecCCCCChhhcCc----c----cc-cccc--C----------C------
Q 006251 400 GHNVEDLVTIFQRVKE--MPAPGPVLIHVVTEKGKGYPPAEAAA----D----RM-HGVV--K----------F------ 450 (654)
Q Consensus 400 GhDi~~L~~al~~ak~--~~~~gP~lI~v~T~KG~G~~~ae~~~----~----~~-Hg~~--~----------f------ 450 (654)
|+|+++++.+++.|.+ +..+||++|++.|++-+|+...+... . ++ |.-+ . +
T Consensus 418 G~D~~AV~~a~~~Ave~~r~g~gPvlIE~~tYR~~GHne~D~p~~yrp~~~~~i~~~~dPi~~~~~~Li~~Gv~te~e~~ 497 (929)
T TIGR00239 418 ADDPEAVAFATRLAVEYRNTFKRDVFIDLVGYRRHGHNEADEPSATQPLMYQKIKKHPTPRKVYADKLVSEGVATEEDVT 497 (929)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeccCCCCCCCCCCccCCHHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHH
Confidence 9999999999887643 24579999999999999996533210 0 00 1100 0 0
Q ss_pred -----------------------CC-----------------cccc----------cc---cC-----------------
Q 006251 451 -----------------------DP-----------------KTGK----------QF---KT----------------- 460 (654)
Q Consensus 451 -----------------------~~-----------------~tg~----------~~---~~----------------- 460 (654)
++ .|+- ++ ++
T Consensus 498 ~i~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~l~~l~~~~~~~P~~f~~h~~~~k~~~~R~~ 577 (929)
T TIGR00239 498 EMVNLYRDALEAADCVVPSWREMNTASFTWSPELNHEWDEEYPNKVEMKRLQELAKRISEVPEGVEMHSRVAKIYFDRTK 577 (929)
T ss_pred HHHHHHHHHHHHHHHhhhccCCccccccccccccccccccCCCCCCCHHHHHHHHHHhccCCCCccccHHHHHHHHHHHH
Confidence 00 0100 00 00
Q ss_pred ----CCCchhHHHHHHHHHHHHHhhCCcEEEEecCccCCC-----------------C-hhhHHHhC-CCCccccchhHH
Q 006251 461 ----KSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGT-----------------G-LNYFQKRF-PDRCFDVGIAEQ 517 (654)
Q Consensus 461 ----~~~~~s~~~a~~~aL~~~~~~d~~vvvl~aDlg~s~-----------------~-l~~f~~~f-p~R~id~GIaE~ 517 (654)
.....+|.+|...+|..+|++|++|+++++|++.++ + +++|.++| +.|++|++|+|.
T Consensus 578 ~~~~g~~~~~~~~A~~~A~~~~l~~~~~V~l~GeDv~rGtFshRHavl~dq~~g~~~~~~~~l~~~~g~~rV~nsplSE~ 657 (929)
T TIGR00239 578 AMAAGEKLFDWGGAENLAFATLVDDGIPVRLSGEDSERGTFFQRHAVLHDQSNGSTYTPLQHLHNGQGAFRVWNSVLSEE 657 (929)
T ss_pred HHhcCCCCccHHHHHHHHHHHHHhcCCCEEEEeeeCCCcccccccccccccccCceeecccchhhhcCCeeEEcCCccHH
Confidence 012256889999999999999999999999997532 1 47888899 899999999999
Q ss_pred HHHHHHHHHHhcCCeeE--Eee-hHHHHH---hHHHHHHHh-hhcC--CCCEEEEEecCCccCCCCCCCCChhhHHHH--
Q 006251 518 HAVTFAAGLASEGVKPF--CAI-YSSFLQ---RGYDQVVHD-VDLQ--KLPVRFAMDRAGLVGADGPTHCGAFDVTFM-- 586 (654)
Q Consensus 518 ~mvg~AaGlA~~G~~Pi--~~t-fa~Fl~---ra~dQI~~~-~a~~--~lpV~~v~~~~G~~g~dG~tHq~~edla~~-- 586 (654)
+++|++.|+|+.|.+|+ +++ |.+|+. .++||+++. .++. ..++++++++++ .|..+..|++..+ ++|
T Consensus 658 a~~G~~~G~a~~g~~~l~i~E~qfgDF~~~AQv~~Dq~i~~~~~K~~~~sglv~~~p~G~-~g~g~~hsS~~~E-~~lql 735 (929)
T TIGR00239 658 SVLGFEYGYATTSPRTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGQMSGLVMLLPHGY-EGQGPEHSSGRLE-RFLQL 735 (929)
T ss_pred HHHHHHHhHHhcCCCCceEEEEeccchhcchHHHHHHHHHHHHHHhcCccCeEEEecCcC-CCCCchhhccCHH-HHHHH
Confidence 99999999999997774 888 999984 779999888 4543 466888877764 4444555665666 677
Q ss_pred hcCCCCEEEecCCHHHHHHHHH-HHHhCCCCcEEEEecCCCCC-Cc------cCCCCCCCCCcccCc
Q 006251 587 SCLPNMVVMAPSDEAELMHMVA-TAAVIDDRPSCFRFPRGNGI-GA------VLPPNNKGTPLETSL 645 (654)
Q Consensus 587 r~iPnl~V~~PsD~~E~~~ll~-~al~~~~~P~~ir~~r~~~~-~~------~~p~~~~~~~~~iGK 645 (654)
.+.|||+|+.|++|.|++++|+ +++...++|++|.+||..+. +. ++|. +.+..+|++
T Consensus 736 ~~~~gl~Vv~pstpad~~~lLrrqa~r~~~~Pvi~~~~K~L~r~~~a~S~~~e~~~--~~f~~~i~~ 800 (929)
T TIGR00239 736 AAEQNMQVCVPTTPAQVFHILRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELAE--GTFQPVIGE 800 (929)
T ss_pred hCCCCCEEEecCCHHHHHHHHHHHHHhCCCCCEEEeccHhhhcCccccCccccCCC--CCccccccc
Confidence 8999999999999999999999 57643389999999998752 11 4443 346666654
No 38
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=100.00 E-value=2.3e-34 Score=279.38 Aligned_cols=153 Identities=25% Similarity=0.397 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHhhCCcEEEEecCccCC----CChhhHHHhCCC-CccccchhHHHHHHHHHHHHhcCCeeEEe-ehHHHH
Q 006251 469 QYFAESLIKEAETDDKIVAIHAAMGGG----TGLNYFQKRFPD-RCFDVGIAEQHAVTFAAGLASEGVKPFCA-IYSSFL 542 (654)
Q Consensus 469 ~a~~~aL~~~~~~d~~vvvl~aDlg~s----~~l~~f~~~fp~-R~id~GIaE~~mvg~AaGlA~~G~~Pi~~-tfa~Fl 542 (654)
++++++|.+++++|++++++++|++.+ ..+++|+++||+ ||||+||+||+|+|+|+|||++|++||++ +|++|+
T Consensus 1 ~~~~~~l~~~~~~~~~vv~l~~D~~~~~g~~~~~~~~~~~~p~~R~~~~gIaEq~~vg~AaGlA~~G~~pi~~~~~a~Fl 80 (167)
T cd07036 1 QAINEALDEEMERDPRVVVLGEDVGDYGGVFKVTKGLLDKFGPDRVIDTPIAEAGIVGLAVGAAMNGLRPIVEIMFADFA 80 (167)
T ss_pred CHHHHHHHHHHhcCCCEEEECcccccCCCcchHhHHHHHhCCCceEEeCCCcHHHHHHHHHHHHHcCCEEEEEeehHHHH
Confidence 368999999999999999999998642 246899999999 99999999999999999999999999999 599999
Q ss_pred HhHHHHHHHhhhcC--------CCCEEEEEecCCccCCCCCCCCChhhHHHHhcCCCCEEEecCCHHHHHHHHHHHHhCC
Q 006251 543 QRGYDQVVHDVDLQ--------KLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVID 614 (654)
Q Consensus 543 ~ra~dQI~~~~a~~--------~lpV~~v~~~~G~~g~dG~tHq~~edla~~r~iPnl~V~~PsD~~E~~~ll~~al~~~ 614 (654)
.|++|||++++|++ ++||++++.++| .+.+|+||+ .+|+++||+||||+|++|+|+.|+++++++++. .
T Consensus 81 ~ra~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg-~~~~G~ths-~~~~a~lr~iPg~~V~~Psd~~e~~~~l~~~~~-~ 157 (167)
T cd07036 81 LPAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGG-GIGGGAQHS-QSLEAWFAHIPGLKVVAPSTPYDAKGLLKAAIR-D 157 (167)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCCEEEEEeCCC-CCCcChhhh-hhHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHh-C
Confidence 99999999999987 499999997776 567899976 577899999999999999999999999999985 6
Q ss_pred CCcEEEEecC
Q 006251 615 DRPSCFRFPR 624 (654)
Q Consensus 615 ~~P~~ir~~r 624 (654)
++|++|++||
T Consensus 158 ~~P~~~~e~k 167 (167)
T cd07036 158 DDPVIFLEHK 167 (167)
T ss_pred CCcEEEEecC
Confidence 7999999986
No 39
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=100.00 E-value=1.5e-33 Score=289.37 Aligned_cols=182 Identities=21% Similarity=0.360 Sum_probs=164.9
Q ss_pred hhHHHHHHHHHHHHHhhCCcEEEEecCccC---CCC-hhhHHHhC-CCCccccchhHHHHHHHHHHHHhcCCeeEEee-h
Q 006251 465 LTYTQYFAESLIKEAETDDKIVAIHAAMGG---GTG-LNYFQKRF-PDRCFDVGIAEQHAVTFAAGLASEGVKPFCAI-Y 538 (654)
Q Consensus 465 ~s~~~a~~~aL~~~~~~d~~vvvl~aDlg~---s~~-l~~f~~~f-p~R~id~GIaE~~mvg~AaGlA~~G~~Pi~~t-f 538 (654)
.++.+|++++|.++|++|++|+++++|+|. .++ +++|+++| ++|++||||+|++++|+|.|+|+.|+||++++ |
T Consensus 2 ~~~~eAi~~Am~~eM~rD~~V~v~GEDVg~~GGvf~~T~GL~~kfG~~RV~DTPiaE~gi~G~avGaA~~GlrPivEiqf 81 (324)
T COG0022 2 MTMIEAINEAMDEEMERDERVVVLGEDVGVYGGVFRVTKGLQEKFGEERVIDTPIAESGIAGIAVGAALTGLRPIVEIQF 81 (324)
T ss_pred ccHHHHHHHHHHHHHhcCCCEEEEcccccccCChhhhchhHHHHhCccceecCccchhhhHHHHHHHHHcCCcceEEEEe
Confidence 578999999999999999999999999973 344 48999999 67999999999999999999999999999999 9
Q ss_pred HHHHHhHHHHHHHhhhc--------CCCCEEEEEecCCccCCCCCCCCChhhHHHHhcCCCCEEEecCCHHHHHHHHHHH
Q 006251 539 SSFLQRGYDQVVHDVDL--------QKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATA 610 (654)
Q Consensus 539 a~Fl~ra~dQI~~~~a~--------~~lpV~~v~~~~G~~g~dG~tHq~~edla~~r~iPnl~V~~PsD~~E~~~ll~~a 610 (654)
.+|+..|+|||++++|+ .++|++++++.+|..+ .|.+|++..+ +++.++||++|++||+|.|++++|++|
T Consensus 82 ~dF~~~a~dqi~n~aAk~ryrsgG~~~~PiviR~p~G~g~~-~~~~HSqs~e-a~f~h~PGlKVV~PStpyDAKGLL~aA 159 (324)
T COG0022 82 ADFIYPAFDQIVNQAAKIRYRSGGQFTVPIVIRTPNGGGIG-GGAQHSQSLE-ALFAHIPGLKVVMPSTPYDAKGLLKAA 159 (324)
T ss_pred cchhHHHHHHHHHHHHHHhhhcCCceeCCEEEEcCCCCCCC-chhhccCCHH-HHHhcCCCceEEecCChHHHHHHHHHH
Confidence 99999999999999986 3789999998776554 6899999999 899999999999999999999999999
Q ss_pred HhCCCCcEEEEecCCCCC--CccCCCCCCCCCcccCceEEecc
Q 006251 611 AVIDDRPSCFRFPRGNGI--GAVLPPNNKGTPLETSLDSWPMS 651 (654)
Q Consensus 611 l~~~~~P~~ir~~r~~~~--~~~~p~~~~~~~~~iGKa~vi~~ 651 (654)
+ ++++||+|++++..+. +.++|. ++|.+|+|||+|+++
T Consensus 160 I-rd~dPViflE~k~lY~~~~~eVP~--~~Y~iPlGkA~i~re 199 (324)
T COG0022 160 I-RDPDPVIFLEHKRLYRSFKGEVPE--EDYTIPLGKAKIVRE 199 (324)
T ss_pred h-cCCCCEEEEecHHHhcccccCCCC--CCccccccceeeEec
Confidence 6 6999999999998754 356774 579999999999886
No 40
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=100.00 E-value=5.5e-34 Score=279.25 Aligned_cols=164 Identities=39% Similarity=0.573 Sum_probs=144.5
Q ss_pred chhHHHHHHHHHHHHHhhCCcEEEEecCccCCCChhhHHHhC---CCCccccchhHHHHHHHHHHHHhcC--CeeEEeeh
Q 006251 464 TLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQKRF---PDRCFDVGIAEQHAVTFAAGLASEG--VKPFCAIY 538 (654)
Q Consensus 464 ~~s~~~a~~~aL~~~~~~d~~vvvl~aDlg~s~~l~~f~~~f---p~R~id~GIaE~~mvg~AaGlA~~G--~~Pi~~tf 538 (654)
+.+|+++++++|.+++++|++|+++++|+++++....+...+ |+|++|+||+|++|+|+|+|||++| ++|++.+|
T Consensus 2 k~~~~~a~~~~l~~~~~~d~~vv~~~~D~~~~~~~~~~~~~~~~~~~r~i~~gIaE~~~vg~a~GlA~~G~~~~~~~~~f 81 (178)
T PF02779_consen 2 KISMRDAFGEALAELAEEDPRVVVIGADLGGGTFGVTFGLAFPFGPGRFINTGIAEQNMVGMAAGLALAGGLRPPVESTF 81 (178)
T ss_dssp EEEHHHHHHHHHHHHHHHTTTEEEEESSTHHHHTSTTTTHHBHHTTTTEEE--S-HHHHHHHHHHHHHHSSSEEEEEEEE
T ss_pred CccHHHHHHHHHHHHHhhCCCEEEEECCcCcchhhhhhhccccCCCceEEecCcchhhccceeeeeeecccccceeEeec
Confidence 468999999999999999999999999999877765555444 5699999999999999999999999 67777789
Q ss_pred HHHHH----hHHHHHHHhhhcCCCCEEEEEecCCc-cCCCCCCCCChhhHHHHhcCCCCEEEecCCHHHHHHHHHHHHhC
Q 006251 539 SSFLQ----RGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVI 613 (654)
Q Consensus 539 a~Fl~----ra~dQI~~~~a~~~lpV~~v~~~~G~-~g~dG~tHq~~edla~~r~iPnl~V~~PsD~~E~~~ll~~al~~ 613 (654)
++|+. |+++|++++.+++++||. ++.++|+ .|.+|+|||+.+|+++|+++|||+|++|+|+.|+++++++++++
T Consensus 82 ~~F~~~~q~r~~~~~~~~~~~~~~~v~-v~~~~g~~~~~~G~tH~s~~d~~~~~~iPg~~v~~Psd~~e~~~~l~~a~~~ 160 (178)
T PF02779_consen 82 ADFLTPAQIRAFDQIRNDMAYGQLPVP-VGTRAGLGYGGDGGTHHSIEDEAILRSIPGMKVVVPSDPAEAKGLLRAAIRR 160 (178)
T ss_dssp GGGGGGGHHHHHHHHHHHHHHHTS-EE-EEEEESGGGSTTGTTTSSSSHHHHHHTSTTEEEEE-SSHHHHHHHHHHHHHS
T ss_pred cccccccchhhhhhhhhhhhcccceec-ceeecCcccccccccccccccccccccccccccccCCCHHHHHHHHHHHHHh
Confidence 99998 999999999999999999 7788887 68899999999999999999999999999999999999999874
Q ss_pred -CCCcEEEEecCCCCC
Q 006251 614 -DDRPSCFRFPRGNGI 628 (654)
Q Consensus 614 -~~~P~~ir~~r~~~~ 628 (654)
+++|+|||++|++++
T Consensus 161 ~~~~P~~ir~~r~~~~ 176 (178)
T PF02779_consen 161 ESDGPVYIREPRGLYP 176 (178)
T ss_dssp SSSSEEEEEEESSEES
T ss_pred CCCCeEEEEeeHHhCC
Confidence 689999999998743
No 41
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=99.97 E-value=2.1e-30 Score=251.04 Aligned_cols=159 Identities=40% Similarity=0.627 Sum_probs=138.3
Q ss_pred hHHHHHHHHHHHHHhhCC-cEEEEecCccCCCChhhHHHhCCCC-------ccccchhHHHHHHHHHHHHhcCCeeEEee
Q 006251 466 TYTQYFAESLIKEAETDD-KIVAIHAAMGGGTGLNYFQKRFPDR-------CFDVGIAEQHAVTFAAGLASEGVKPFCAI 537 (654)
Q Consensus 466 s~~~a~~~aL~~~~~~d~-~vvvl~aDlg~s~~l~~f~~~fp~R-------~id~GIaE~~mvg~AaGlA~~G~~Pi~~t 537 (654)
+++++++++|.+++++|+ +++++++|++.++++.. .+.||+| ++|+||+||+|+++|+|||++|++||+++
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~v~~~~~D~~~~~~~~~-~~~~~~~~~~~~~R~~~~gIaE~~~vg~a~GlA~~G~~pi~~~ 79 (168)
T smart00861 1 ATRKAFGEALAELAERDPERVVVSGADVGGSTGLDR-GGVFPDTKGLGPGRVIDTGIAEQAMVGFAAGLALAGLRPVVAI 79 (168)
T ss_pred CHHHHHHHHHHHHHhhCCCcEEEEehhhCcCcCCCc-CCccCCCCCCCCccEEEcCcCHHHHHHHHHHHHHcCCCcEEEe
Confidence 367899999999999955 89999999988776653 5566665 99999999999999999999999999999
Q ss_pred hHHHHHhHHHHHHHhhhcCCCCEEEEEecCCccCCCCCCCCChhhHHHHhcCCCCEEEecCCHHHHHHHHHHHHhCCCCc
Q 006251 538 YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRP 617 (654)
Q Consensus 538 fa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~~g~dG~tHq~~edla~~r~iPnl~V~~PsD~~E~~~ll~~al~~~~~P 617 (654)
|+.|+.|++||+++++++++.++++..+.++..|.+|+|||+.+|+++|++|||++|++|+|+.|+++++++++...++|
T Consensus 80 ~~~f~~~a~~~~~~~~~~~~~~~v~~~~~g~~~g~~G~tH~~~~~~~~~~~iP~~~v~~P~~~~e~~~~l~~a~~~~~~p 159 (168)
T smart00861 80 FFTFFDRAKDQIRSDGAMGRVPVVVRHDSGGGVGEDGPTHHSQEDEALLRAIPGLKVVAPSDPAEAKGLLRAAIRRDDGP 159 (168)
T ss_pred eHHHHHHHHHHHHHhCcccCCCEEEEecCccccCCCCccccchhHHHHHhcCCCcEEEecCCHHHHHHHHHHHHhCCCCC
Confidence 99999999999999887764555444322333688999999999999999999999999999999999999998665789
Q ss_pred EEEEecCC
Q 006251 618 SCFRFPRG 625 (654)
Q Consensus 618 ~~ir~~r~ 625 (654)
+|||++|+
T Consensus 160 ~~i~~~~~ 167 (168)
T smart00861 160 PVIRLERK 167 (168)
T ss_pred EEEEecCC
Confidence 99999885
No 42
>KOG0524 consensus Pyruvate dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=99.94 E-value=9.6e-27 Score=233.84 Aligned_cols=186 Identities=18% Similarity=0.305 Sum_probs=160.1
Q ss_pred CchhHHHHHHHHHHHHHhhCCcEEEEecCccC---CCC-hhhHHHhC-CCCccccchhHHHHHHHHHHHHhcCCeeEEee
Q 006251 463 PTLTYTQYFAESLIKEAETDDKIVAIHAAMGG---GTG-LNYFQKRF-PDRCFDVGIAEQHAVTFAAGLASEGVKPFCAI 537 (654)
Q Consensus 463 ~~~s~~~a~~~aL~~~~~~d~~vvvl~aDlg~---s~~-l~~f~~~f-p~R~id~GIaE~~mvg~AaGlA~~G~~Pi~~t 537 (654)
.+++.++++++++.++|++|++|++++++++- +.+ .++|.++| +.|++||||+|.+..|+|.|.|+.|+||+|+.
T Consensus 33 ~~mtvreALn~amdEEm~rD~~VfvmGEeV~qy~GaykvtkGL~~K~G~~RV~DTPItE~gFtG~avGAA~~GLrPi~ef 112 (359)
T KOG0524|consen 33 KEMTVREALNQAMDEEMDRDPRVFVMGEEVGQYGGAYKVTKGLLDKFGDKRVLDTPITEMGFTGIAVGAAMAGLRPICEF 112 (359)
T ss_pred eeeeHHHHHHHHHHHHhccCCcEEEechhhhhcCCeeehhhhHHHhcCCceeecCcchhcccchhhHhHHHhCcchhhhh
Confidence 45789999999999999999999999999874 344 38999999 89999999999999999999999999999997
Q ss_pred -hHHHHHhHHHHHHHhhhc--------CCCCEEEEEecCCccCCCCCCCCChhhHHHHhcCCCCEEEecCCHHHHHHHHH
Q 006251 538 -YSSFLQRGYDQVVHDVDL--------QKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVA 608 (654)
Q Consensus 538 -fa~Fl~ra~dQI~~~~a~--------~~lpV~~v~~~~G~~g~dG~tHq~~edla~~r~iPnl~V~~PsD~~E~~~ll~ 608 (654)
-..|.+.++|||+|.+|+ +++|++|+++.+- ...-|++|++.+. +|+.++||++|++|+++.|++++++
T Consensus 113 MtfnFsmqAid~IiNsaakt~YmSgG~~~~piVfRGPnG~-~~gv~AqHSQ~f~-~wy~siPGlkvvapysaedakGLlK 190 (359)
T KOG0524|consen 113 MTFNFSMQAIDQIINSAAKTHYMSGGQQPVPIVFRGPNGA-AAGVAAQHSQDFA-SWYGSIPGLKVVAPYSAEDAKGLLK 190 (359)
T ss_pred hcchhHHHHHHHHHHHHHHHhcccCCceeccEEEeCCCCc-ccchhhhhhhhhH-HHhccCCCceEeccCChhhhhhHHH
Confidence 788999999999999885 5789999986543 2336899999999 7999999999999999999999999
Q ss_pred HHHhCCCCcEEEEecCCCC-CCccCCC--CCCCCCcccCceEEecc
Q 006251 609 TAAVIDDRPSCFRFPRGNG-IGAVLPP--NNKGTPLETSLDSWPMS 651 (654)
Q Consensus 609 ~al~~~~~P~~ir~~r~~~-~~~~~p~--~~~~~~~~iGKa~vi~~ 651 (654)
+|+ ++++|++|.++--.+ ...++|+ -.+++.+|+|||+|.++
T Consensus 191 aAI-Rd~NPVV~lEnelLYg~~f~i~~E~ls~~fv~p~gkAkier~ 235 (359)
T KOG0524|consen 191 AAI-RDENPVVFLENELLYGLSFEIPEEALSKDFVLPLGKAKIERE 235 (359)
T ss_pred Hhc-cCCCCeEEEechhhcCCCccCChhhcCcceeeeccceeeeec
Confidence 996 799999999987653 1222332 13568999999998765
No 43
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=99.93 E-value=6.7e-25 Score=233.39 Aligned_cols=228 Identities=24% Similarity=0.318 Sum_probs=162.9
Q ss_pred CCCHHHHHHHH---HHHHHHHHHHhh-----ccCCCCCCCccHHHHHHHHHhhcCCCCcEEEecCCchHHHHHHHcCCh-
Q 006251 154 NLSTEDLEQLA---AELRADIVNSVS-----KTGGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILTGRR- 224 (654)
Q Consensus 154 ~l~~~~L~~la---~~lR~~il~~v~-----~~~GH~gsslg~vel~~aL~~v~~~p~Dr~I~s~GH~aY~~~~l~Gr~- 224 (654)
+++.++|..+- ..+|..--++.. +.+|..++++|+..+.+++-..++...|+++.+ |+..+|.+.+|..
T Consensus 23 ~~~~~~l~~~y~~M~l~R~fd~k~~~l~r~G~i~gf~~~~~GqEA~~vg~~~aL~~~~D~i~~~--YR~h~~~l~~G~~~ 100 (358)
T COG1071 23 ALSKEELLELYRLMLLIRRFDEKMLQLQRQGKIGGFYHLYIGQEAVQVGAAAALRPGEDWIFPT--YRDHGHLLARGVPL 100 (358)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCcCCcccHHHHHHHHHHhcCCCCCEeecc--cCccccceecCCCH
Confidence 56777766555 455665544432 357899999999766666544443345988877 5655588889973
Q ss_pred -HHHHHH--HhcC---CCCCCCCCCCCCcccc-CcccchhhHHHHHHHHHHHHHcCCCC-eEEEEEcCCCcccchHHHHH
Q 006251 225 -SRMNTM--RKTS---GLAGFPKREESVHDAF-GAGHSSTSISAGLGMAVARDILGKNN-NVISVIGDGAMTAGQAYEAM 296 (654)
Q Consensus 225 -~~l~~l--rq~g---gl~G~p~~~es~~~~f-g~G~lG~~is~AlGmAlA~kl~g~~~-~VvaviGDGal~eG~~~EAl 296 (654)
+.|..+ |+.| |.++..+........+ ++|.+|++++.|+|+|+|.|+++.++ +++|++|||+.++|.+||+|
T Consensus 101 ~~~~a~~~G~~~g~~kGr~~~~h~~~~~~~~~~~~~iVg~Q~~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEal 180 (358)
T COG1071 101 KEIMAELLGKATGPCKGRGGSMHYSDKEKGFLGGSGIVGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEAL 180 (358)
T ss_pred HHHHHHHhccccCCCCCCCCcccccccccccCCCCceecccccHHHHHHHHHHHhCCCCcEEEEEecCCccccchHHHHH
Confidence 555555 2222 1111111111122233 57999999999999999999999555 99999999999999999999
Q ss_pred HHHhhcCCCEEEEEECCCCC-cccccccCCCCCchhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHh
Q 006251 297 NNAGFLDANLIVVLNDNKQV-SLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYA 375 (654)
Q Consensus 297 n~A~~~~lnLi~Il~dN~~~-s~pt~~~~g~~~~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~ 375 (654)
|+|+.|++|+||+|+||++. |+|...+.. .+.+..|
T Consensus 181 N~A~v~klPvvf~ieNN~yAiSvp~~~q~~--------------------------------------~~~~~~r----- 217 (358)
T COG1071 181 NFAAVWKLPVVFVIENNQYAISVPRSRQTA--------------------------------------AEIIAAR----- 217 (358)
T ss_pred HHHHHhcCCEEEEEecCCceeecchhhccc--------------------------------------chhHHhh-----
Confidence 99999999999999999973 333221000 0112223
Q ss_pred hhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHHHHhHh--CCCCCCEEEEEEeecCCCCChhh
Q 006251 376 RGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKE--MPAPGPVLIHVVTEKGKGYPPAE 438 (654)
Q Consensus 376 r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al~~ak~--~~~~gP~lI~v~T~KG~G~~~ae 438 (654)
..+||++.+ .|||+|+.++++++++|.+ +.+.+|+||++.|++-.|++...
T Consensus 218 -----------a~aygipgv-~VDG~D~~avy~~~~~A~e~AR~g~GPtLIE~~tYR~~~HS~sD 270 (358)
T COG1071 218 -----------AAAYGIPGV-RVDGNDVLAVYEAAKEAVERARAGEGPTLIEAVTYRYGGHSTSD 270 (358)
T ss_pred -----------hhccCCCeE-EECCcCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeecCCCCCCC
Confidence 778999999 7899999999999887654 24678999999999999998763
No 44
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=99.92 E-value=9.2e-24 Score=226.70 Aligned_cols=229 Identities=21% Similarity=0.232 Sum_probs=163.5
Q ss_pred ccccCCCCHHHHHHHHH---HHHHHHHHHhh---c--cCCCCCCCccHHHHHHHHHhhcCCCCcEEEecCCchHHHHHHH
Q 006251 149 PIHMKNLSTEDLEQLAA---ELRADIVNSVS---K--TGGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKIL 220 (654)
Q Consensus 149 p~~~~~l~~~~L~~la~---~lR~~il~~v~---~--~~GH~gsslg~vel~~aL~~v~~~p~Dr~I~s~GH~aY~~~~l 220 (654)
+.+.++++.++|.++-+ .+|..-..+.. + ..|+++++.|+..+.+++-..+ .|+|+++.. |+.++|.+.
T Consensus 11 ~~~~~~~~~~~ll~~y~~M~~~R~~e~~~~~~~~~g~i~g~~~~~~GqEa~~vg~~~al-~~~D~~~~~--yR~~~~~la 87 (341)
T CHL00149 11 NSNENNINSMWLLVLYEDMLLGRNFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGVIKLL-AETDYVCST--YRDHVHALS 87 (341)
T ss_pred cccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhC-CCCCEEEcc--cccHHHHHH
Confidence 45777788888776652 33443322221 2 3588999999977766554444 568988877 777778999
Q ss_pred cCCh--HHHHHH--HhcC---CCCCCCCCCCCCcccc-CcccchhhHHHHHHHHHHHHHcC-------CCCeEEEEEcCC
Q 006251 221 TGRR--SRMNTM--RKTS---GLAGFPKREESVHDAF-GAGHSSTSISAGLGMAVARDILG-------KNNNVISVIGDG 285 (654)
Q Consensus 221 ~Gr~--~~l~~l--rq~g---gl~G~p~~~es~~~~f-g~G~lG~~is~AlGmAlA~kl~g-------~~~~VvaviGDG 285 (654)
+|.. +.|.++ +..| |.+|..+....+...+ +.|++|.++|+|+|+|+|.|+++ ++++|+|++|||
T Consensus 88 ~G~~~~~~~ae~~g~~~g~~~Gr~gs~H~~~~~~~~~~~~g~lG~~lp~AvGaa~A~k~~~~~~~~~~~~~vvv~~~GDG 167 (341)
T CHL00149 88 KGVPPKNVMAELFGKETGCSRGRGGSMHIFSAPHNFLGGFAFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTACFFGDG 167 (341)
T ss_pred cCCCHHHHHHHHcCCCCCCCCCCCCCccccchhcCccCCChhhhccHHHHHHHHHHHHHhccccccCCCCCEEEEEeCCc
Confidence 9973 455555 2222 2223222222233333 46999999999999999999887 588999999999
Q ss_pred CcccchHHHHHHHHhhcCCCEEEEEECCCC-CcccccccCCCCCchhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCch
Q 006251 286 AMTAGQAYEAMNNAGFLDANLIVVLNDNKQ-VSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQT 364 (654)
Q Consensus 286 al~eG~~~EAln~A~~~~lnLi~Il~dN~~-~s~pt~~~~g~~~~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~ 364 (654)
++++|++||+||+|+.+++|++|||+||++ .++++..... .
T Consensus 168 a~~~G~~~Ealn~A~~~~LPvifvv~NN~~~i~~~~~~~~~--------------------------------------~ 209 (341)
T CHL00149 168 TTNNGQFFECLNMAVLWKLPIIFVVENNQWAIGMAHHRSTS--------------------------------------I 209 (341)
T ss_pred hhhhcHHHHHHHHHhhcCCCEEEEEEeCCeeeecchhheeC--------------------------------------C
Confidence 999999999999999999999999999994 4433211000 0
Q ss_pred HHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHHHH----hHhCCCCCCEEEEEEeecCCCCChh
Q 006251 365 HEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQR----VKEMPAPGPVLIHVVTEKGKGYPPA 437 (654)
Q Consensus 365 ~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al~~----ak~~~~~gP~lI~v~T~KG~G~~~a 437 (654)
.++. .++++||++.+ .|||+|+.++.+++++ +++ .++|++|++.|++..|++..
T Consensus 210 ~d~a----------------~~a~a~G~~~~-~Vdg~d~~av~~a~~~A~~~ar~--~~gP~lIev~tyR~~gHs~~ 267 (341)
T CHL00149 210 PEIH----------------KKAEAFGLPGI-EVDGMDVLAVREVAKEAVERARQ--GDGPTLIEALTYRFRGHSLA 267 (341)
T ss_pred ccHH----------------HHHHhCCCCEE-EEeCCCHHHHHHHHHHHHHHHHh--CCCCEEEEEEEecCCCcCCC
Confidence 1222 34889999998 8999999887765554 443 47899999999999999865
No 45
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=99.92 E-value=1.8e-23 Score=225.47 Aligned_cols=225 Identities=21% Similarity=0.249 Sum_probs=158.8
Q ss_pred CCCCHHHHHHHH---HHHHHHHHHHhh--c---cCCCCCCCccHHHHHHHHHhhcCCCCcEEEecCCchHHHHHHHcCCh
Q 006251 153 KNLSTEDLEQLA---AELRADIVNSVS--K---TGGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILTGRR 224 (654)
Q Consensus 153 ~~l~~~~L~~la---~~lR~~il~~v~--~---~~GH~gsslg~vel~~aL~~v~~~p~Dr~I~s~GH~aY~~~~l~Gr~ 224 (654)
..++.++|.++. ..+|..-..+.. + ..|+++.+.|+..+.+++-..+ .|+|+++.. |+.++|.+.+|..
T Consensus 25 ~~~~~~~ll~~yr~M~~~R~~e~~~~~l~~~g~i~g~~~~~~GqEA~~vg~~~aL-~~~D~~~~~--yR~hg~~la~G~~ 101 (362)
T PLN02269 25 VETSKQELVDFFRDMYLMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAI-TKEDAIITA--YRDHCTHLGRGGT 101 (362)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhc-CCCCEEEec--hhhHHHHHHcCCC
Confidence 466777776655 333444332222 2 2478999999977666554444 478988877 7777799999973
Q ss_pred --HHHHHH--HhcC---CCCCCCCCCCCCcccc-CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHH
Q 006251 225 --SRMNTM--RKTS---GLAGFPKREESVHDAF-GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAM 296 (654)
Q Consensus 225 --~~l~~l--rq~g---gl~G~p~~~es~~~~f-g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAl 296 (654)
+.|.++ +..| |.+|..+........+ ++|++|+++|.|+|+|+|.|+++.+.+++|++|||++++|.+||||
T Consensus 102 ~~~~~ae~~g~~~g~~~GrggsmH~~~~~~~~~~~~~~vG~~~p~A~G~A~A~k~~~~~~v~v~~~GDGa~~eG~~~Eal 181 (362)
T PLN02269 102 VLEVFAELMGRKDGCSRGKGGSMHFYKKDANFYGGHGIVGAQVPLGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEAL 181 (362)
T ss_pred HHHHHHHHcCCCCCCCCCCCCcccccchhcCccccCchhhccccHHHHHHHHHHHhCCCCeEEEEECCCCcccCHHHHHH
Confidence 445444 2222 2333323222222333 5799999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCEEEEEECCCCCc-ccccccCCCCCchhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHh
Q 006251 297 NNAGFLDANLIVVLNDNKQVS-LPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYA 375 (654)
Q Consensus 297 n~A~~~~lnLi~Il~dN~~~s-~pt~~~~g~~~~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~ 375 (654)
|+|+.|++|++|||+||++.+ +|+..+.. ...+.+
T Consensus 182 n~A~~~~lPvvfvveNN~~aist~~~~~~~--------------------------------------~~~~~~------ 217 (362)
T PLN02269 182 NIAALWDLPVIFVCENNHYGMGTAEWRAAK--------------------------------------SPAYYK------ 217 (362)
T ss_pred HHhhccCcCEEEEEeCCCEeccCchhhhcc--------------------------------------chHHHH------
Confidence 999999999999999999633 22211100 011111
Q ss_pred hhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHHHHhHh--CCCCCCEEEEEEeecCCCCChhh
Q 006251 376 RGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKE--MPAPGPVLIHVVTEKGKGYPPAE 438 (654)
Q Consensus 376 r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al~~ak~--~~~~gP~lI~v~T~KG~G~~~ae 438 (654)
++++++.+ .|||+|++++.++++.+.+ +. ++|++|++.|++..||+...
T Consensus 218 ------------~~~~~p~~-~VDG~D~~av~~a~~~A~~~aR~-~gP~lIe~~tyR~~gHs~~D 268 (362)
T PLN02269 218 ------------RGDYVPGL-KVDGMDVLAVKQACKFAKEHALS-NGPIVLEMDTYRYHGHSMSD 268 (362)
T ss_pred ------------hhcCCCeE-EECCCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCcCCCcCCCC
Confidence 23456666 8999999999999987654 23 78999999999999997543
No 46
>KOG0525 consensus Branched chain alpha-keto acid dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=99.91 E-value=7.1e-25 Score=217.43 Aligned_cols=185 Identities=20% Similarity=0.273 Sum_probs=162.3
Q ss_pred CchhHHHHHHHHHHHHHhhCCcEEEEecCccCC--CC-hhhHHHhC-CCCccccchhHHHHHHHHHHHHhcCCeeEEee-
Q 006251 463 PTLTYTQYFAESLIKEAETDDKIVAIHAAMGGG--TG-LNYFQKRF-PDRCFDVGIAEQHAVTFAAGLASEGVKPFCAI- 537 (654)
Q Consensus 463 ~~~s~~~a~~~aL~~~~~~d~~vvvl~aDlg~s--~~-l~~f~~~f-p~R~id~GIaE~~mvg~AaGlA~~G~~Pi~~t- 537 (654)
+++++.++++++|.-.++.||+.+++++|++-+ +. +.+++++| .+|+||++++||+++|+..|+|..|-+.|.++
T Consensus 39 ~~mnl~qsvn~al~ial~tdp~a~vfgedv~fggvfrct~gl~~kfgk~rvfntplceqgivgfgig~aa~g~~aiaeiq 118 (362)
T KOG0525|consen 39 KKMNLYQSVNQALHIALETDPRAVVFGEDVAFGGVFRCTTGLAEKFGKDRVFNTPLCEQGIVGFGIGLAAMGATAIAEIQ 118 (362)
T ss_pred ccchHHHHHHHHHHHHhhcCCceEEeccccccceEEEeecchHHHhCccccccCchhhcccceechhhhhcccceEEEEe
Confidence 467888999999999999999999999998733 22 46899999 79999999999999999999999999999999
Q ss_pred hHHHHHhHHHHHHHhhhcC--------CC-CEEEEEecCCccCCCCCCCCChhhHHHHhcCCCCEEEecCCHHHHHHHHH
Q 006251 538 YSSFLQRGYDQVVHDVDLQ--------KL-PVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVA 608 (654)
Q Consensus 538 fa~Fl~ra~dQI~~~~a~~--------~l-pV~~v~~~~G~~g~dG~tHq~~edla~~r~iPnl~V~~PsD~~E~~~ll~ 608 (654)
|++|+..|||||+|.+|+. ++ ..+++ +.+|.+|+.|-+|+++.+ +++.+.||++|+.|..|.|+++++.
T Consensus 119 fadyifpafdqivneaakfryrsgnqfncg~ltir-~p~gavghg~~yhsqspe-aff~h~pgikvviprsp~qakglll 196 (362)
T KOG0525|consen 119 FADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTIR-APWGAVGHGALYHSQSPE-AFFCHVPGIKVVIPRSPRQAKGLLL 196 (362)
T ss_pred eccccchhHHHHHHHHHhheeccCCccccCceEEe-ccccccccccccccCCch-hheecCCCceEEecCCcchhhceee
Confidence 9999999999999999863 22 24555 457778999999999999 8999999999999999999999999
Q ss_pred HHHhCCCCcEEEEecCCCC--CCccCCCCCCCCCcccCceEEeccc
Q 006251 609 TAAVIDDRPSCFRFPRGNG--IGAVLPPNNKGTPLETSLDSWPMSM 652 (654)
Q Consensus 609 ~al~~~~~P~~ir~~r~~~--~~~~~p~~~~~~~~~iGKa~vi~~~ 652 (654)
.++ ++++|++|++||-.+ ...++|. ++|.+|+++|+|+++=
T Consensus 197 sci-rdpnp~iffepk~lyr~a~edvp~--~dy~iplsqaevireg 239 (362)
T KOG0525|consen 197 SCI-RDPNPCIFFEPKILYRQAVEDVPE--GDYMIPLSQAEVIREG 239 (362)
T ss_pred eec-cCCCceEEechHHHHHHhhhhCCC--CCccccccHHHHhhcC
Confidence 996 799999999998764 2345664 5799999999999874
No 47
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=99.90 E-value=1.2e-22 Score=214.11 Aligned_cols=202 Identities=22% Similarity=0.299 Sum_probs=151.6
Q ss_pred ccCCCCCCCccHHHHHHHHHhhcCCCCcEEEecCCchHHHHHHHcCCh--HHHHHH--HhcC---CCCCCCCC-CCCCcc
Q 006251 177 KTGGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILTGRR--SRMNTM--RKTS---GLAGFPKR-EESVHD 248 (654)
Q Consensus 177 ~~~GH~gsslg~vel~~aL~~v~~~p~Dr~I~s~GH~aY~~~~l~Gr~--~~l~~l--rq~g---gl~G~p~~-~es~~~ 248 (654)
+..|+.+++.|+..+.+++-..+ +|+|.++.+ |+.++|.+.+|.. +.|.++ +..| |.+|..+. ......
T Consensus 23 ~~~~~~~~~~GqEa~~vg~~~~l-~~~D~~~~~--yR~~~~~la~G~~~~~~~~e~~g~~~g~~~G~~g~~h~~~~~~~~ 99 (293)
T cd02000 23 KIGGFYHLSIGQEAVAVGVAAAL-RPGDWVFPT--YRDHGHALARGVDLKEMLAELFGKETGPCKGRGGSMHIGDKEKNF 99 (293)
T ss_pred ccccccCCCCChHHHHHHHHHHC-CCCCEEEec--chhHHHHHHcCCCHHHHHHHHcCCCCCCCCCCCCCCCCCchhcCc
Confidence 34677889999988877776666 478988775 8888899999973 444444 2222 12221121 112344
Q ss_pred ccCcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCc-ccccccCCCC
Q 006251 249 AFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVS-LPTATLDGPA 327 (654)
Q Consensus 249 ~fg~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s-~pt~~~~g~~ 327 (654)
..++|++|+++|+|+|+|+|.++.+++++|||++|||++++|.+||+||+|+.+++|+++||+||++.+ ++.....
T Consensus 100 ~~~~g~lG~~~p~a~G~a~a~k~~~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~vv~NN~~~i~~~~~~~~--- 176 (293)
T cd02000 100 FGGNGIVGGQVPLAAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFVCENNGYAISTPTSRQT--- 176 (293)
T ss_pred cccccccccchhHHHHHHHHHHHhCCCCEEEEEeCCCccccchHHHHHHHHHhhCCCEEEEEeeCCeeccCCHHHHh---
Confidence 457899999999999999999999999999999999999999999999999999999999999998532 1110000
Q ss_pred CchhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHH
Q 006251 328 TPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLV 407 (654)
Q Consensus 328 ~~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~ 407 (654)
+..++ ..+++++|++++ .|||+|++++.
T Consensus 177 -----------------------------------~~~~~----------------~~~a~a~G~~~~-~Vdg~d~~~v~ 204 (293)
T cd02000 177 -----------------------------------AGTSI----------------ADRAAAYGIPGI-RVDGNDVLAVY 204 (293)
T ss_pred -----------------------------------CCccH----------------HHHHHhCCCCEE-EECCCCHHHHH
Confidence 00112 334889999998 89999999998
Q ss_pred HHHHHhHhC--CCCCCEEEEEEeecCCCCCh
Q 006251 408 TIFQRVKEM--PAPGPVLIHVVTEKGKGYPP 436 (654)
Q Consensus 408 ~al~~ak~~--~~~gP~lI~v~T~KG~G~~~ 436 (654)
++++++.+. ..++|++|++.|++..|++.
T Consensus 205 ~a~~~A~~~ar~~~~P~lIev~~~r~~gHs~ 235 (293)
T cd02000 205 EAAKEAVERARAGGGPTLIEAVTYRLGGHST 235 (293)
T ss_pred HHHHHHHHHHHccCCCEEEEEEEeccCCCCC
Confidence 888876531 24789999999999999984
No 48
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=99.90 E-value=1.2e-22 Score=223.44 Aligned_cols=224 Identities=19% Similarity=0.258 Sum_probs=157.8
Q ss_pred CCCHHHHHHHHH---HHHHHHHHHhh-----ccCCCCCCCccHHHHHHHHHhhcCCCCcEEEecCCchHHHHHHHcCC--
Q 006251 154 NLSTEDLEQLAA---ELRADIVNSVS-----KTGGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILTGR-- 223 (654)
Q Consensus 154 ~l~~~~L~~la~---~lR~~il~~v~-----~~~GH~gsslg~vel~~aL~~v~~~p~Dr~I~s~GH~aY~~~~l~Gr-- 223 (654)
+++.++|.++-+ .+|..--.+.. +..|+++.+.|+..+.+++-..+ +|.|+++.. |+.++|.+..|.
T Consensus 82 ~ls~e~ll~lyr~M~~~R~fEe~~~~l~~~Gki~g~~h~~~GqEA~~vg~~~aL-~~~D~v~~~--yR~h~~~La~G~~~ 158 (433)
T PLN02374 82 LVTREEGLELYEDMVLGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLL-KKDDSVVST--YRDHVHALSKGVPA 158 (433)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeccCCCCCcHHHHHHHHHHc-CCCCEEEcc--CcChHHhhhcCCCH
Confidence 567777766653 23433322322 12478888999977766665444 468988775 777678888886
Q ss_pred hHHHHHH--HhcC---CCCCCCCCCCCCcccc-CcccchhhHHHHHHHHHHHHHcC-------CCCeEEEEEcCCCcccc
Q 006251 224 RSRMNTM--RKTS---GLAGFPKREESVHDAF-GAGHSSTSISAGLGMAVARDILG-------KNNNVISVIGDGAMTAG 290 (654)
Q Consensus 224 ~~~l~~l--rq~g---gl~G~p~~~es~~~~f-g~G~lG~~is~AlGmAlA~kl~g-------~~~~VvaviGDGal~eG 290 (654)
++.|.++ +..| |.+|..+........+ +.|++|.++|.|+|+|+|.++++ +++.|||++|||++++|
T Consensus 159 ~~~mael~Gk~~g~~~GrggsmH~~~~~~~~~g~~g~lG~~lP~AvGaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~~eG 238 (433)
T PLN02374 159 RAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNG 238 (433)
T ss_pred HHHHHHHcCCCCCCCCCCCCcCccCchhhCCCCCceeccCchhHHHHHHHHHHHhhccccccCCCCEEEEEECCCccccC
Confidence 3455555 2222 2333222222222223 46899999999999999999885 48899999999999999
Q ss_pred hHHHHHHHHhhcCCCEEEEEECCCC-CcccccccCCCCCchhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHH
Q 006251 291 QAYEAMNNAGFLDANLIVVLNDNKQ-VSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAA 369 (654)
Q Consensus 291 ~~~EAln~A~~~~lnLi~Il~dN~~-~s~pt~~~~g~~~~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~ 369 (654)
++||+||+|+.+++|++|||+||++ +++|+..+.. . .++.+
T Consensus 239 ~f~EaLn~A~~~~LPvIfVV~NN~yaig~~~~~~t~-~-------------------------------------~dia~ 280 (433)
T PLN02374 239 QFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATS-D-------------------------------------PEIWK 280 (433)
T ss_pred hHHHHHHHHHHhCCCEEEEEeCCCEeecceeeeccC-C-------------------------------------CCHHH
Confidence 9999999999999999999999985 3433322110 0 11222
Q ss_pred HHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHHHH----hHhCCCCCCEEEEEEeecCCCCChh
Q 006251 370 KVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQR----VKEMPAPGPVLIHVVTEKGKGYPPA 437 (654)
Q Consensus 370 k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al~~----ak~~~~~gP~lI~v~T~KG~G~~~a 437 (654)
++++||++.+ .|||+|+.++++++++ +++ .++|++|++.|++.+|++..
T Consensus 281 ----------------~A~a~G~~~~-~VDG~D~~av~~a~~~A~~~Ar~--g~gP~LIe~~tyR~~GHs~~ 333 (433)
T PLN02374 281 ----------------KGPAFGMPGV-HVDGMDVLKVREVAKEAIERARR--GEGPTLVECETYRFRGHSLA 333 (433)
T ss_pred ----------------HHHhcCCcEE-EECCCCHHHHHHHHHHHHHHHHH--cCCCEEEEEEEEecCCcCCC
Confidence 3889999999 8999999988865554 444 47899999999999999865
No 49
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=99.89 E-value=2.4e-22 Score=212.43 Aligned_cols=204 Identities=23% Similarity=0.298 Sum_probs=147.1
Q ss_pred ccCCCCCCCccHHHHHHHHHhhcCCCCcEEEecCCchHHHHHHHcCCh--HHHHHHHhc-CCCCCCCC--C-CCCC-ccc
Q 006251 177 KTGGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILTGRR--SRMNTMRKT-SGLAGFPK--R-EESV-HDA 249 (654)
Q Consensus 177 ~~~GH~gsslg~vel~~aL~~v~~~p~Dr~I~s~GH~aY~~~~l~Gr~--~~l~~lrq~-ggl~G~p~--~-~es~-~~~ 249 (654)
+..|..+++.|+..+.+++...+ .|.|+++.+ |+..++.+..|.. +.|.++... .+..|... . .... +..
T Consensus 21 ~~~g~~~~~~GqEa~~v~~~~~l-~~~D~v~~~--yR~~~~~la~g~~~~~~~~e~~g~~~g~~g~~~~~~~~~~~~~~~ 97 (300)
T PF00676_consen 21 GRFGFYHLSAGQEAIQVAAAAAL-RPGDWVFPY--YRDHGHALARGIDLEEIFAELLGKAKGHGGGRHPLHFSDKGLNIL 97 (300)
T ss_dssp TSSSCTT-TTTCHHHHHHHHHHS-CTTSEEEEC--STTHHHHHHTTT-HHHHHHHHHTBTTSTTTTGCTTEEEBTTTTBE
T ss_pred CCeEEecchHHHHHHHHHHHHhc-cCCCEEEec--ccchhhhhhccccccchhHHhcCcccCCCCCccccccccccceee
Confidence 35688899999987777665555 577998877 7776688888863 445555221 22222111 1 1111 233
Q ss_pred cCcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCC-CcccccccCCCCC
Q 006251 250 FGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQ-VSLPTATLDGPAT 328 (654)
Q Consensus 250 fg~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~-~s~pt~~~~g~~~ 328 (654)
.+++++|.++++|+|+|+|.|+++.+..++|++|||+.++|.+||+||+|+.|++|+||||+||++ .|+|+..+...
T Consensus 98 ~~~~~vg~~~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvveNN~~aist~~~~~~~~-- 175 (300)
T PF00676_consen 98 GASSPVGAQVPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVENNQYAISTPTEEQTAS-- 175 (300)
T ss_dssp EEESSTTTHHHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEEEESEETTEEHHHHCSS--
T ss_pred eccccccccCccccchhHhhhhcCCceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEecCCcccccCccccccc--
Confidence 357999999999999999999999999999999999999999999999999999999999999996 44443321100
Q ss_pred chhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHH
Q 006251 329 PVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (654)
Q Consensus 329 ~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~ 408 (654)
..+ ..+++++|++.+ .|||+|+.++++
T Consensus 176 ------------------------------------~~~----------------~~~a~~~gip~~-~VDG~D~~av~~ 202 (300)
T PF00676_consen 176 ------------------------------------PDI----------------ADRAKGYGIPGI-RVDGNDVEAVYE 202 (300)
T ss_dssp ------------------------------------STS----------------GGGGGGTTSEEE-EEETTSHHHHHH
T ss_pred ------------------------------------cch----------------hhhhhccCCcEE-EECCEeHHHHHH
Confidence 011 234789999998 899999999999
Q ss_pred HHHHhHh--CCCCCCEEEEEEeecCCCCChhh
Q 006251 409 IFQRVKE--MPAPGPVLIHVVTEKGKGYPPAE 438 (654)
Q Consensus 409 al~~ak~--~~~~gP~lI~v~T~KG~G~~~ae 438 (654)
++++|.+ +.+++|+||++.|++-.|++..+
T Consensus 203 a~~~A~~~~R~g~gP~lie~~tyR~~gHs~~D 234 (300)
T PF00676_consen 203 AAKEAVEYARAGKGPVLIEAVTYRLRGHSESD 234 (300)
T ss_dssp HHHHHHHHHHTTT--EEEEEEE--SS-SSTTS
T ss_pred HHHHHHHHHhcCCCCEEEEEeeccCCCCCCCC
Confidence 8887643 24689999999999999998764
No 50
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.89 E-value=7.9e-22 Score=209.91 Aligned_cols=202 Identities=23% Similarity=0.330 Sum_probs=147.5
Q ss_pred cCCCCCCCccHHHHHHHHHhhcCCCCcEEEecCCchHHHHHHHcCCh--HHHHHH--HhcC---CCCCCCCCCCCCcccc
Q 006251 178 TGGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILTGRR--SRMNTM--RKTS---GLAGFPKREESVHDAF 250 (654)
Q Consensus 178 ~~GH~gsslg~vel~~aL~~v~~~p~Dr~I~s~GH~aY~~~~l~Gr~--~~l~~l--rq~g---gl~G~p~~~es~~~~f 250 (654)
..|+.+++.|+..+.+++-..+ +|+|+++.. |+.++|.+.+|.. +.|.++ +..| |.+|..+........+
T Consensus 30 ~~~~~~~~~GqEa~~vg~~~al-~~~D~~~~~--yR~~~~~la~G~~~~~~~~~~~g~~~g~~~Gr~g~~h~~~~~~~~~ 106 (315)
T TIGR03182 30 IGGFCHLYIGQEAVAVGLIAAL-KPDDYVITS--YRDHGHALARGVPPKEVMAELTGRATGCSKGKGGSMHMFDREKNFY 106 (315)
T ss_pred cccccCCCCChHHHHHHHHHhC-CCCCEEEec--hhhHHHHHHcCCCHHHHHHHHcCCCCCCCCCCCCCCCcCchhhCcc
Confidence 3578888999976665554444 578988776 7777799999973 444444 2222 2222222211122223
Q ss_pred -CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCc-ccccccCCCCC
Q 006251 251 -GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVS-LPTATLDGPAT 328 (654)
Q Consensus 251 -g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s-~pt~~~~g~~~ 328 (654)
+.|++|.++|+|+|+|+|.+++++++.|+|++|||++++|.+||+||+|+.+++|+++||.||++.. +++....
T Consensus 107 ~~~g~~G~~lp~AiGaa~A~~~~~~~~~vv~~~GDGa~~~g~~~ealn~A~~~~lPvi~vv~NN~yg~s~~~~~~~---- 182 (315)
T TIGR03182 107 GGHGIVGAQVPLATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWKLPVIFVIENNLYAMGTSVERSS---- 182 (315)
T ss_pred cCcCcccccccHHHHHHHHHHHhCCCCEEEEEeCCCcccccHHHHHHHHhhccCcCEEEEEEcCCccccCCHHHHh----
Confidence 5699999999999999999999999999999999999999999999999999999999999997532 1111000
Q ss_pred chhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHH
Q 006251 329 PVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (654)
Q Consensus 329 ~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~ 408 (654)
...++ ..++++||++++ .|||+|++++.+
T Consensus 183 ----------------------------------~~~~~----------------a~~A~a~G~~~~-~Vdg~d~~av~~ 211 (315)
T TIGR03182 183 ----------------------------------SVTDL----------------YKRGESFGIPGE-RVDGMDVLAVRE 211 (315)
T ss_pred ----------------------------------CCcCH----------------HHHHHhCCCCEE-EECCCCHHHHHH
Confidence 00112 234889999998 899999999888
Q ss_pred HHHHhHh--CCCCCCEEEEEEeecCCCCChh
Q 006251 409 IFQRVKE--MPAPGPVLIHVVTEKGKGYPPA 437 (654)
Q Consensus 409 al~~ak~--~~~~gP~lI~v~T~KG~G~~~a 437 (654)
+++++.+ ...++|++|++.|++..|+...
T Consensus 212 a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~ 242 (315)
T TIGR03182 212 AAKEAVERARSGKGPILLEMKTYRFRGHSMS 242 (315)
T ss_pred HHHHHHHHHHccCCCEEEEEeCCcCCCCCCC
Confidence 8876543 1347899999999999999754
No 51
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=99.89 E-value=7.3e-22 Score=219.94 Aligned_cols=386 Identities=18% Similarity=0.208 Sum_probs=253.4
Q ss_pred CCCCCCCccHHHHHHHHHhhcC-CCCcEE-EecCCchHH---HHHHHcCC-----------hHHH----HHHHhcCCCCC
Q 006251 179 GGHLSANLGVVELTLALHRVFN-TPDDKI-IWDVGHQAY---VHKILTGR-----------RSRM----NTMRKTSGLAG 238 (654)
Q Consensus 179 ~GH~gsslg~vel~~aL~~v~~-~p~Dr~-I~s~GH~aY---~~~~l~Gr-----------~~~l----~~lrq~ggl~G 238 (654)
-||+|++.|..-+.+.|..+.+ ...+.+ |...||+.- +..+|.|. .+-| ..|+..||+++
T Consensus 60 lGHwGt~pg~s~~Y~H~nr~i~~~d~~~~yv~GpGHg~~~~~~~~yLeGtys~~yp~~s~d~~Gm~rL~~qFs~PgGi~S 139 (793)
T COG3957 60 LGHWGTQPGLSFIYAHLNRLISKYDANMAYVMGPGHGGPAIVANTYLEGTYSEMYPDISQDEEGLNRLFKQFSFPGGIGS 139 (793)
T ss_pred cccccCCCCchhhhhhhhHHHHhhCcceEEEecCCCCcceeeeccccCCccccccccccccHHHHHHHHHhccCCCCccc
Confidence 4999999999999888865432 223444 555799972 22345552 1223 33444578888
Q ss_pred CCCCCCCCccccCcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccch---HHHHHHH-HhhcCCCEEEEEECCC
Q 006251 239 FPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQ---AYEAMNN-AGFLDANLIVVLNDNK 314 (654)
Q Consensus 239 ~p~~~es~~~~fg~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~---~~EAln~-A~~~~lnLi~Il~dN~ 314 (654)
|..+ +.++...-.|-+|++++.|.|.|+ ..++-.+.|++|||+-.+|. .|-+-.+ .-..+.+++-|+.-|+
T Consensus 140 H~~p-etPGsIhEGGeLGy~l~ha~gAa~----d~Pdli~~~vvGDGeaetgplatsWhs~kf~np~~dGavLPIL~lNG 214 (793)
T COG3957 140 HVAP-ETPGSIHEGGELGYALSHAYGAAF----DNPDLIVACVVGDGEAETGPLATSWHSNKFLNPARDGAVLPILHLNG 214 (793)
T ss_pred ccCC-CCCCccCcCcchhHHHHHHHHhhc----CCCCcEEEEEecccccccCccccccccccccCccccCceeeEEEecc
Confidence 8875 456655556888888888877765 56899999999999776663 3332111 1122478999999999
Q ss_pred CC-cccccccCCCCCchhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCe
Q 006251 315 QV-SLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLY 393 (654)
Q Consensus 315 ~~-s~pt~~~~g~~~~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~ 393 (654)
+. +.||. ++.++ -.++. .+|+.+||.
T Consensus 215 ykI~npT~--------lar~s-----------------------------~~el~----------------~~f~G~Gy~ 241 (793)
T COG3957 215 YKIENPTV--------LARIS-----------------------------DEELK----------------ALFEGYGYE 241 (793)
T ss_pred eeccCcee--------eeecC-----------------------------hHHHH----------------HHHhhCCCc
Confidence 63 34442 11110 02222 359999999
Q ss_pred EEeecCCCCHHHHHHHHH---------------HhHhC---CCCCCEEEEEEeecCCCCChhhc-----CccccccccC-
Q 006251 394 YIGPVDGHNVEDLVTIFQ---------------RVKEM---PAPGPVLIHVVTEKGKGYPPAEA-----AADRMHGVVK- 449 (654)
Q Consensus 394 ~ig~vDGhDi~~L~~al~---------------~ak~~---~~~gP~lI~v~T~KG~G~~~ae~-----~~~~~Hg~~~- 449 (654)
.+ .|+|+|.++..+.+. ++++. ..++..+|+++|.||++-+..-. .....|.++.
T Consensus 242 p~-~veg~d~~d~hq~mAa~ldt~~~~i~~iq~~ar~~~~~~~p~wPmiilrtPkGwt~p~~idG~~~eg~~raHqvPl~ 320 (793)
T COG3957 242 PV-FVEGADPADMHQLMAAVLDTAFEEIQRIQRRARENNEAIRPRWPMIILRTPKGWTGPVEIDGKKLEGSWRAHQVPLK 320 (793)
T ss_pred ee-EecCCChHHhhhhHHHHHHHHHHHHHHHHHHHHhcccccCccccceeeecCCCCcCceeecceeccccchhccCCCC
Confidence 88 789999888444322 12221 12345678999999997664211 1223466652
Q ss_pred ------------------------CCCc-----ccccccC------------------------------------CCCc
Q 006251 450 ------------------------FDPK-----TGKQFKT------------------------------------KSPT 464 (654)
Q Consensus 450 ------------------------f~~~-----tg~~~~~------------------------------------~~~~ 464 (654)
||.. +.+++.+ ...+
T Consensus 321 ~~~~~p~h~~~l~~wl~sy~p~elfde~gaL~~e~~~~ap~~~~Rm~~~p~angg~l~~eL~lPD~r~~~v~~~~~g~~~ 400 (793)
T COG3957 321 GHNLNPAHLLELEEWLKSYKPEELFDEHGALKPELRELAPKGEERMGANPHANGGLLPRELPLPDLRDYAVEVSEPGAVT 400 (793)
T ss_pred CCCCCchhhHHHHHHHHhcChHhhhcccCCCCHHHHHhccccccccCCCCcccCccccccCCCCChhhcCcccCCCCccc
Confidence 2210 0000000 0112
Q ss_pred hhHHHHHHHHHHHHHhhCCc-EEEEecCccCCCChhhHHH-----------------hCCCCccccchhHHHHHHHHHHH
Q 006251 465 LTYTQYFAESLIKEAETDDK-IVAIHAAMGGGTGLNYFQK-----------------RFPDRCFDVGIAEQHAVTFAAGL 526 (654)
Q Consensus 465 ~s~~~a~~~aL~~~~~~d~~-vvvl~aDlg~s~~l~~f~~-----------------~fp~R~id~GIaE~~mvg~AaGl 526 (654)
..-+.++++.|.+.++.|++ +.++++|...|.++.+..+ .-.+|+++ .++|+.+.|.+.|+
T Consensus 401 ~~~t~~lg~~l~dv~k~N~~~fRvf~PDE~aSNrl~~v~~~tkr~~~~~~~~ed~~lsp~GRV~e-~LSEh~c~Gwlegy 479 (793)
T COG3957 401 AESTTALGRFLRDVMKLNPDNFRVFGPDETASNRLGGVLKVTKRVWMAVTLPEDDFLSPDGRVME-VLSEHACQGWLEGY 479 (793)
T ss_pred hhhHHHHHHHHHHHHhcCccceEeeCCCcchhhhhHHHHHHhhhhhcccccCcccccCCCceeeh-hhcHHHHHHHHHHH
Confidence 33457889999999999988 8899999888877632211 11389999 69999999999999
Q ss_pred HhcCCeeEEeehHHHHHhHHHHHHHhhhc--------------CCCCEEEEEecCCccCCCCCCCCC--hhhHHHHhcCC
Q 006251 527 ASEGVKPFCAIYSSFLQRGYDQVVHDVDL--------------QKLPVRFAMDRAGLVGADGPTHCG--AFDVTFMSCLP 590 (654)
Q Consensus 527 A~~G~~Pi~~tfa~Fl~ra~dQI~~~~a~--------------~~lpV~~v~~~~G~~g~dG~tHq~--~edla~~r~iP 590 (654)
++.|.+.++++|..|+ +..|.++++.++ .++++++. ++.--.+++|-|||. ..| .++.-.+
T Consensus 480 ~LtGr~glf~sYEaF~-~iv~sm~nQh~kwl~v~~e~~wr~~~~Sln~l~T-S~vw~QdhNGfsHQdPgf~~-~~~~k~~ 556 (793)
T COG3957 480 LLTGRHGLFASYEAFA-HIVDSMFNQHAKWLKVTREVEWRRPIPSLNYLLT-SHVWRQDHNGFSHQDPGFID-HVANKKS 556 (793)
T ss_pred HhcCCccceeeHHHHH-HHHHHHHhhhHHHHHHHHhcccCCCCCcccceee-hhhhhcccCCCccCCchHHH-HHHhhcc
Confidence 9999999999999997 334555555443 23333332 222226899999995 333 2334445
Q ss_pred C-CEEEecCCHHHHHHHHHHHHhCCCCcEEEEecCCCC
Q 006251 591 N-MVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNG 627 (654)
Q Consensus 591 n-l~V~~PsD~~E~~~ll~~al~~~~~P~~ir~~r~~~ 627 (654)
+ +.||.|+|++.+..++.+|++..+.-.+|..+|++.
T Consensus 557 d~vRvyfPpDaNtlLav~d~~l~s~n~in~iVa~K~p~ 594 (793)
T COG3957 557 DIVRVYFPPDANTLLAVYDHCLRSRNKINVIVASKQPR 594 (793)
T ss_pred CceeEecCCCCcchhhhhhHHhhccCceEEEEecCCCc
Confidence 4 579999999999999999999999999999999974
No 52
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.88 E-value=4.3e-21 Score=206.36 Aligned_cols=225 Identities=21% Similarity=0.253 Sum_probs=157.7
Q ss_pred cCCCCHHHHHHHH---HHHHHHHHHHhh--c--cCCCCCCCccHHHHHHHHHhhcCCCCcEEEecCCchHHHHHHHcCCh
Q 006251 152 MKNLSTEDLEQLA---AELRADIVNSVS--K--TGGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILTGRR 224 (654)
Q Consensus 152 ~~~l~~~~L~~la---~~lR~~il~~v~--~--~~GH~gsslg~vel~~aL~~v~~~p~Dr~I~s~GH~aY~~~~l~Gr~ 224 (654)
+..++.++|.++- ..+|..-..+.. + .-|.++++.|+..+.+++-..+ +|+|+++.. |+.++|.+..|..
T Consensus 18 ~~~~~~~~l~~~y~~m~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~vg~~~al-~~~D~~~~~--yR~h~~~l~~G~~ 94 (341)
T TIGR03181 18 APDLSDEELVELYRDMVLTRRFDTKALALQRQGRLGTYAPNLGQEAAQVGSALAL-RKDDWVFPS--YRDHAAMLARGVP 94 (341)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCceecccCCCChHHHHHHHHHHc-CCCCEEEcc--hhhHHHHHHcCCC
Confidence 4457777766555 333444333322 1 1267789999977666654444 478987776 7877799999973
Q ss_pred --HHHHHHHhcCCCCCCCCCCCCCcccc-CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhh
Q 006251 225 --SRMNTMRKTSGLAGFPKREESVHDAF-GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGF 301 (654)
Q Consensus 225 --~~l~~lrq~ggl~G~p~~~es~~~~f-g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~ 301 (654)
+.|.++. |.-.|.... .....+ ++|++|.++|.|+|+|+|.|+.+++++|+|++|||++++|.++|+||+|+.
T Consensus 95 ~~~~~ae~~--g~~~g~~~~--~~~~~~g~~~~vG~~lp~AiGaAla~k~~~~~~~vv~~~GDGa~~~g~~~EaL~tA~~ 170 (341)
T TIGR03181 95 LVEILLYWR--GDERGSWDP--EGVNILPPNIPIGTQYLHAAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALNFAGV 170 (341)
T ss_pred HHHHHHHhc--CcCcCCCCc--hhcCccCCCchHhcchhHHHhHHHHHHhhCCCCEEEEEecCCccccChHHHHHHHHhc
Confidence 4444441 212221111 122233 468899999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEEECCCCC-cccccccCCCCCchhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccC
Q 006251 302 LDANLIVVLNDNKQV-SLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLIS 380 (654)
Q Consensus 302 ~~lnLi~Il~dN~~~-s~pt~~~~g~~~~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~ 380 (654)
+++|+++||.||++. ++++..... ..++
T Consensus 171 ~~LPvi~Vv~NN~~~~~~~~~~~~~--------------------------------------~~d~------------- 199 (341)
T TIGR03181 171 FKAPVVFFVQNNQWAISVPRSKQTA--------------------------------------APTL------------- 199 (341)
T ss_pred cCCCEEEEEECCCCccccchhhhhC--------------------------------------CcCH-------------
Confidence 999999999999854 222111000 0111
Q ss_pred CChhhhhhhcCCeEEeecCCCCHHHHHHHHHHhHh--CCCCCCEEEEEEeecCCCCChhh
Q 006251 381 ASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKE--MPAPGPVLIHVVTEKGKGYPPAE 438 (654)
Q Consensus 381 ~~~~~lfea~G~~~ig~vDGhDi~~L~~al~~ak~--~~~~gP~lI~v~T~KG~G~~~ae 438 (654)
..++++||++++ .|||+|..++.++++.+.+ ...++|++|++.|++-.|++..+
T Consensus 200 ---~~~a~a~G~~~~-~Vdg~d~~av~~a~~~A~~~a~~~~gP~lIev~t~R~~gH~~~D 255 (341)
T TIGR03181 200 ---AQKAIAYGIPGV-QVDGNDVLAVYAVTKEAVERARSGGGPTLIEAVTYRLGPHTTAD 255 (341)
T ss_pred ---HHHHhhCCCCEE-EECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEeecCCCCCCCC
Confidence 335889999998 8999999877766654432 12479999999999999988654
No 53
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=99.84 E-value=2e-20 Score=193.29 Aligned_cols=200 Identities=24% Similarity=0.315 Sum_probs=151.2
Q ss_pred cCCCCCCCccHHHHHHHHHhhcCCCCcEEEec-CCchHHHHHHHcCC--hHHHHHH--HhcC---CCCCCCCCCCCCccc
Q 006251 178 TGGHLSANLGVVELTLALHRVFNTPDDKIIWD-VGHQAYVHKILTGR--RSRMNTM--RKTS---GLAGFPKREESVHDA 249 (654)
Q Consensus 178 ~~GH~gsslg~vel~~aL~~v~~~p~Dr~I~s-~GH~aY~~~~l~Gr--~~~l~~l--rq~g---gl~G~p~~~es~~~~ 249 (654)
..|+.+.+.|+..+.+.+-..+ ++.|-+|.+ +.|+ +-+++|. ++.|.++ ||.| |..|..+.. ++...
T Consensus 87 IRGFCHLy~GQEAvavGme~ai-t~~D~iItsYR~Hg---~~~~~G~S~~~v~aEL~Gr~~Gc~kGKGGSMHmy-~k~Fy 161 (394)
T KOG0225|consen 87 IRGFCHLYDGQEAVAVGMEAAI-TKSDSIITSYRCHG---WTYLRGVSVREVLAELMGRQAGCSKGKGGSMHMY-AKNFY 161 (394)
T ss_pred hceeeeecccHHHHHHHHHHhc-cCCCceEEEeeeee---EEeecCccHHHHHHHHhccccccccCCCcceeee-ccccc
Confidence 4799999999988887775444 578999988 6666 6677786 5777777 5554 344544422 11111
Q ss_pred cCcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCc
Q 006251 250 FGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATP 329 (654)
Q Consensus 250 fg~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~ 329 (654)
-|.|++|.++|.+.|+|+|.|+++.+..++++.|||+.++|++|||+|+|..|++|+||||+||.+.+......
T Consensus 162 GGnGIVGAQiPLGaGia~A~kY~~~~~v~~alYGDGAaNQGQ~fEa~NMA~LW~LP~IFvCENN~yGMGTs~~R------ 235 (394)
T KOG0225|consen 162 GGNGIVGAQIPLGAGIAFAQKYNREDAVCFALYGDGAANQGQVFEAFNMAALWKLPVIFVCENNHYGMGTSAER------ 235 (394)
T ss_pred CccceeccCCCccccHHHHHHhccCCceEEEEeccccccchhHHHHhhHHHHhCCCEEEEEccCCCccCcchhh------
Confidence 27899999999999999999999999999999999999999999999999999999999999998754211100
Q ss_pred hhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHH
Q 006251 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (654)
Q Consensus 330 vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~a 409 (654)
..+-.+.|.|| .| ++.+ .|||.|+-++.+|
T Consensus 236 -------------------------------------asa~teyykRG-----------~y-iPGl-~VdGmdvlaVr~a 265 (394)
T KOG0225|consen 236 -------------------------------------ASASTEYYKRG-----------DY-IPGL-KVDGMDVLAVREA 265 (394)
T ss_pred -------------------------------------hhcChHHHhcc-----------CC-CCce-EECCcchhhHHHH
Confidence 00111222232 11 4455 7899999999999
Q ss_pred HHHhHhC--CCCCCEEEEEEeecCCCCChhh
Q 006251 410 FQRVKEM--PAPGPVLIHVVTEKGKGYPPAE 438 (654)
Q Consensus 410 l~~ak~~--~~~gP~lI~v~T~KG~G~~~ae 438 (654)
.+.|++. .++||.++++.|++-.|++-.+
T Consensus 266 ~KfA~~~~~~g~GPilmE~~TYRy~GHSmSD 296 (394)
T KOG0225|consen 266 TKFAKKYALEGKGPILMEMDTYRYHGHSMSD 296 (394)
T ss_pred HHHHHHHHhcCCCCEEEEEeeeeecccccCC
Confidence 9988763 4589999999999999998543
No 54
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=99.81 E-value=4.1e-19 Score=179.39 Aligned_cols=168 Identities=23% Similarity=0.291 Sum_probs=124.6
Q ss_pred CCchH---HHHHHHcCC--------h---HHHH-HHHhc---CCCCCCCCCCCCCccccCcccchhhHHHHHHHHHHHHH
Q 006251 210 VGHQA---YVHKILTGR--------R---SRMN-TMRKT---SGLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDI 271 (654)
Q Consensus 210 ~GH~a---Y~~~~l~Gr--------~---~~l~-~lrq~---ggl~G~p~~~es~~~~fg~G~lG~~is~AlGmAlA~kl 271 (654)
.||.+ |+.++|.|. + +.|. .|||+ ||+++||.. +.++....+|++|++|+.|+|+|+
T Consensus 2 ~GHg~~~l~a~l~l~G~~~~~~p~~~~~~~gl~~lf~qfs~~gg~psH~~~-~tpGi~~~~G~LG~gLs~A~G~a~---- 76 (227)
T cd02011 2 PGHGGPAVLANLYLEGSYSEFYPEISQDEEGMRKLFKQFSFPGGIPSHAAP-ETPGSIHEGGELGYSLSHAYGAVF---- 76 (227)
T ss_pred CChHHHHHHHHHHhcCCCccccccccccHHHHHHHHHhcCCCCCCCCCCcc-cCCCeeecccchhhHHHHHHHhhh----
Confidence 47876 777788882 2 1243 35774 568889886 678888899999999999999974
Q ss_pred cCCCCeEEEEEcCCCcccchH---HHHHHHHhhc-CCCEEEEEECCCC-CcccccccCCCCCchhhhhHHHHHhhhchhH
Q 006251 272 LGKNNNVISVIGDGAMTAGQA---YEAMNNAGFL-DANLIVVLNDNKQ-VSLPTATLDGPATPVGALSSALSKLQASTNF 346 (654)
Q Consensus 272 ~g~~~~VvaviGDGal~eG~~---~EAln~A~~~-~lnLi~Il~dN~~-~s~pt~~~~g~~~~vgals~~l~~~~~~~~~ 346 (654)
++++.+|+|++||||+++|.. ||+.+++... +.||+.|+++|++ +++||... . +
T Consensus 77 d~~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpIld~Ng~~i~~pt~~~------~--~------------- 135 (227)
T cd02011 77 DNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKISNPTILA------R--I------------- 135 (227)
T ss_pred cCCCcEEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEEEEcCCCcccCCcccc------c--c-------------
Confidence 578899999999999999996 9998898755 5799999999985 44444210 0 0
Q ss_pred HHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHHHHh-------------
Q 006251 347 RKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRV------------- 413 (654)
Q Consensus 347 ~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al~~a------------- 413 (654)
+.+++.++ |++|||+++ .|||||++++.++++++
T Consensus 136 ----------------~~e~l~~~----------------~~~yG~~~~-~VDG~D~~av~~~~a~a~~~~~~~i~~~~~ 182 (227)
T cd02011 136 ----------------SHEELEAL----------------FRGYGYEPY-FVEGDDPETMHQAMAATLDWAIEEIKAIQK 182 (227)
T ss_pred ----------------CchhHHHH----------------HHhCCCceE-EECCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12445554 999999998 79999999988776532
Q ss_pred --HhC-CCCCC--EEEEEEeecCCCCCh
Q 006251 414 --KEM-PAPGP--VLIHVVTEKGKGYPP 436 (654)
Q Consensus 414 --k~~-~~~gP--~lI~v~T~KG~G~~~ 436 (654)
++. ...+| .+|+++|.|||.-|.
T Consensus 183 ~~~~~~~~~~~~wp~~~~~~~kg~~~p~ 210 (227)
T cd02011 183 RAREGGDASRPRWPMIVLRTPKGWTGPK 210 (227)
T ss_pred HHHhCCCCCCCCCCEEEEeCCCCCCCCc
Confidence 211 11233 689999999997653
No 55
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=99.75 E-value=2.3e-17 Score=170.63 Aligned_cols=204 Identities=15% Similarity=0.166 Sum_probs=137.7
Q ss_pred cCCCCCCCccHHHHHHHHHhhcCCC----CcEEEecCCchHHHHHHH--cCC--hHHHHHHHhcC----C------CCCC
Q 006251 178 TGGHLSANLGVVELTLALHRVFNTP----DDKIIWDVGHQAYVHKIL--TGR--RSRMNTMRKTS----G------LAGF 239 (654)
Q Consensus 178 ~~GH~gsslg~vel~~aL~~v~~~p----~Dr~I~s~GH~aY~~~~l--~Gr--~~~l~~lrq~g----g------l~G~ 239 (654)
+.++++ .-|+.-+.++|..+++.. -+.+|+..-|+.-.+.+. .|. .+.|.+|.... + ..-|
T Consensus 11 ~~krfs-~eG~Es~~~~l~~~~~~~~~~~~~d~v~gm~HRgrln~L~~~lg~~~~~if~ef~g~~~~~~~~~~~gdv~yH 89 (265)
T cd02016 11 GQKRFG-LEGAESLIPALDELIDRAAELGVEEVVIGMAHRGRLNVLANVLGKPLEQIFSEFEGKSEFPEDDEGSGDVKYH 89 (265)
T ss_pred CCeEEE-ecCHHHHHHHHHHHHHHHHhcCCCeEEeccCcCCcHHHHHHHhCCCHHHHHHHhhCCCCCCCCCCCCCCcCcC
Confidence 345664 777777777776665432 234666666775333333 454 34455553211 1 0111
Q ss_pred ---CCCCCCC-------ccccCcccchhhHHHHHHHHHHHHHcC-----CCCeEEEEEcCCCc-ccchHHHHHHHHhhcC
Q 006251 240 ---PKREESV-------HDAFGAGHSSTSISAGLGMAVARDILG-----KNNNVISVIGDGAM-TAGQAYEAMNNAGFLD 303 (654)
Q Consensus 240 ---p~~~es~-------~~~fg~G~lG~~is~AlGmAlA~kl~g-----~~~~VvaviGDGal-~eG~~~EAln~A~~~~ 303 (654)
+...... ......+|+|..+|.|+|+|+|.++++ .+..++|++|||++ ++|.+||+||+|..++
T Consensus 90 lg~~~~~~~~~~~~~~~~l~~npS~l~~~~pva~G~A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG~~~EalNlA~l~~ 169 (265)
T cd02016 90 LGYSSDRKTPSGKKVHLSLAPNPSHLEAVNPVVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQGVVYETLNLSNLPG 169 (265)
T ss_pred CccCcccccCCCCeeEEEecCCCcccccccCeehhHHHHHHHhcCCccCCCeEEEEEecCccccCCChHHHHHHHHHhcC
Confidence 1100000 111235789999999999999999998 47889999999996 6999999999999999
Q ss_pred CC---EEEEEECCCCCc-ccccccCCCCCchhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhcc
Q 006251 304 AN---LIVVLNDNKQVS-LPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLI 379 (654)
Q Consensus 304 ln---Li~Il~dN~~~s-~pt~~~~g~~~~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~ 379 (654)
+| +|+||+||++.. +|..... + ...+.+
T Consensus 170 lp~gg~ifvveNNq~g~sT~~~~~~--~------------------------------------~~~~~~---------- 201 (265)
T cd02016 170 YTTGGTIHIVVNNQIGFTTDPRDSR--S------------------------------------SPYCTD---------- 201 (265)
T ss_pred CCCCCEEEEEEeCCEEEEecHHHhc--c------------------------------------cccHHH----------
Confidence 98 999999998633 3221100 0 011222
Q ss_pred CCChhhhhhhcCCeEEeecCCCCHHHHHHHHHHhHh--CCCCCCEEEEEEeecCCCCChh
Q 006251 380 SASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKE--MPAPGPVLIHVVTEKGKGYPPA 437 (654)
Q Consensus 380 ~~~~~~lfea~G~~~ig~vDGhDi~~L~~al~~ak~--~~~~gP~lI~v~T~KG~G~~~a 437 (654)
+++++|++.+ .|||+|++++++++++|.+ +..++|++|++.|++-+|+...
T Consensus 202 ------~a~~~gip~~-~VdG~D~~aV~~a~~~A~~~~r~g~gp~lIe~~tYR~~GHse~ 254 (265)
T cd02016 202 ------VAKMIGAPIF-HVNGDDPEAVVRATRLALEYRQKFKKDVVIDLVCYRRHGHNEL 254 (265)
T ss_pred ------HHeecCCCEE-EEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCc
Confidence 3789999998 8999999999999887643 2457999999999999999754
No 56
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=99.60 E-value=1.1e-14 Score=139.92 Aligned_cols=125 Identities=23% Similarity=0.296 Sum_probs=91.6
Q ss_pred cCcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCc-ccccccCCCCC
Q 006251 250 FGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVS-LPTATLDGPAT 328 (654)
Q Consensus 250 fg~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s-~pt~~~~g~~~ 328 (654)
.+.|++|.++|.|+|++++. ++++|||++|||+++. .+|++++|..+++|+++||.||+... +...
T Consensus 43 ~~~g~~G~~~~~a~Gaa~a~----~~~~vv~~~GDG~~~~--~~~~l~ta~~~~~~~~~iv~nN~~~~~~~~~------- 109 (168)
T cd00568 43 TGFGAMGYGLPAAIGAALAA----PDRPVVCIAGDGGFMM--TGQELATAVRYGLPVIVVVFNNGGYGTIRMH------- 109 (168)
T ss_pred CCchhhhhhHHHHHHHHHhC----CCCcEEEEEcCcHHhc--cHHHHHHHHHcCCCcEEEEEECCccHHHHHH-------
Confidence 46799999999999999986 4789999999999995 78999999999999999999998432 1110
Q ss_pred chhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHH
Q 006251 329 PVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (654)
Q Consensus 329 ~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~ 408 (654)
...+.. + .......-..+...+++++|++++ .++ +++++.+
T Consensus 110 ---------~~~~~~-----------------~----------~~~~~~~~~~d~~~~a~~~G~~~~-~v~--~~~~l~~ 150 (168)
T cd00568 110 ---------QEAFYG-----------------G----------RVSGTDLSNPDFAALAEAYGAKGV-RVE--DPEDLEA 150 (168)
T ss_pred ---------HHHHcC-----------------C----------CcccccCCCCCHHHHHHHCCCeEE-EEC--CHHHHHH
Confidence 000000 0 000000111234567999999998 665 5999999
Q ss_pred HHHHhHhCCCCCCEEEEEEe
Q 006251 409 IFQRVKEMPAPGPVLIHVVT 428 (654)
Q Consensus 409 al~~ak~~~~~gP~lI~v~T 428 (654)
+++++++. ++|++|+++|
T Consensus 151 a~~~a~~~--~~p~~i~v~~ 168 (168)
T cd00568 151 ALAEALAA--GGPALIEVKT 168 (168)
T ss_pred HHHHHHhC--CCCEEEEEEC
Confidence 99998863 7999999986
No 57
>KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion]
Probab=99.53 E-value=4.7e-15 Score=152.46 Aligned_cols=130 Identities=27% Similarity=0.343 Sum_probs=106.9
Q ss_pred cccchhhHHHHHHHHHHHHHcCCC-CeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCC-CcccccccCCCCCc
Q 006251 252 AGHSSTSISAGLGMAVARDILGKN-NNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQ-VSLPTATLDGPATP 329 (654)
Q Consensus 252 ~G~lG~~is~AlGmAlA~kl~g~~-~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~-~s~pt~~~~g~~~~ 329 (654)
+..+.++||.|+|.|.|.|++.++ ..+||++|||+.+||.+|.++|+|+.+..|+||||-||++ +|+|+.++.+...
T Consensus 192 ssplatqlpqAvGaaYa~k~~~~nnac~V~yfGdG~aSEGD~HA~~NfAAtle~Pvif~CRNNG~AISTptseQyr~DG- 270 (432)
T KOG1182|consen 192 SSPLATQLPQAVGAAYALKMRKKNNACAVTYFGDGAASEGDAHAAFNFAATLECPVIFFCRNNGWAISTPTSEQYRGDG- 270 (432)
T ss_pred cchhhhccchhhhhhhhhhhcccCCeEEEEEecCCcccccchhhhhhHHHHhCCCEEEEEcCCCeeeccccHHHhcCCc-
Confidence 467789999999999999988776 7799999999999999999999999999999999999995 7777765432110
Q ss_pred hhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHH
Q 006251 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (654)
Q Consensus 330 vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~a 409 (654)
++.| -.++|+..| .|||+|.-+++.|
T Consensus 271 -------------------------------------Ia~k----------------G~aYGi~sI-RVDGnD~lAvYnA 296 (432)
T KOG1182|consen 271 -------------------------------------IAVK----------------GPAYGIRSI-RVDGNDALAVYNA 296 (432)
T ss_pred -------------------------------------eEEe----------------ccccceEEE-EecCcchHHHHHH
Confidence 0111 347999999 8999999999999
Q ss_pred HHHhHhC--CCCCCEEEEEEeecCCCCCh
Q 006251 410 FQRVKEM--PAPGPVLIHVVTEKGKGYPP 436 (654)
Q Consensus 410 l~~ak~~--~~~gP~lI~v~T~KG~G~~~ 436 (654)
.+.|+++ .+.+|++|++.|++--.++.
T Consensus 297 ~k~ARe~av~e~rPvliEamtYRvGHHST 325 (432)
T KOG1182|consen 297 VKEAREMAVTEQRPVLIEAMTYRVGHHST 325 (432)
T ss_pred HHHHHHHHHhccCchhhhhhhhhhccccC
Confidence 9988764 35799999999987544443
No 58
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=99.51 E-value=4.6e-13 Score=132.78 Aligned_cols=122 Identities=25% Similarity=0.355 Sum_probs=91.8
Q ss_pred cCcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCC-CEEEEEECCCCCcccccccCCCCC
Q 006251 250 FGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDA-NLIVVLNDNKQVSLPTATLDGPAT 328 (654)
Q Consensus 250 fg~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~l-nLi~Il~dN~~~s~pt~~~~g~~~ 328 (654)
+..|++|+++|+|+|+++|. ++++|||++|||+++ |..++|.+|+++++ |+++||.||+..... +...
T Consensus 45 ~~~g~mG~~lpaAiGaala~----p~~~Vv~i~GDG~f~--m~~~eL~ta~~~~l~~i~ivV~NN~~yg~~-----~~~~ 113 (188)
T cd03371 45 LTVGSMGHASQIALGIALAR----PDRKVVCIDGDGAAL--MHMGGLATIGGLAPANLIHIVLNNGAHDSV-----GGQP 113 (188)
T ss_pred eecCccccHHHHHHHHHHhC----CCCcEEEEeCCcHHH--hhccHHHHHHHcCCCCcEEEEEeCchhhcc-----CCcC
Confidence 34599999999999999986 578999999999998 67789999998875 788888888742110 0000
Q ss_pred chhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHH
Q 006251 329 PVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (654)
Q Consensus 329 ~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~ 408 (654)
... ...+...++++||+.+...|+ +.++|.+
T Consensus 114 ~~~-----------------------------------------------~~~d~~~~A~a~G~~~~~~v~--~~~el~~ 144 (188)
T cd03371 114 TVS-----------------------------------------------FDVSLPAIAKACGYRAVYEVP--SLEELVA 144 (188)
T ss_pred CCC-----------------------------------------------CCCCHHHHHHHcCCceEEecC--CHHHHHH
Confidence 000 011224468999998743565 8999999
Q ss_pred HHHHhHhCCCCCCEEEEEEeecCCC
Q 006251 409 IFQRVKEMPAPGPVLIHVVTEKGKG 433 (654)
Q Consensus 409 al~~ak~~~~~gP~lI~v~T~KG~G 433 (654)
+++++.+. ++|++|++.+.++++
T Consensus 145 al~~a~~~--~~p~lIev~~~~~~~ 167 (188)
T cd03371 145 ALAKALAA--DGPAFIEVKVRPGSR 167 (188)
T ss_pred HHHHHHhC--CCCEEEEEEecCCCC
Confidence 99998764 789999999988775
No 59
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=99.51 E-value=2.1e-13 Score=144.35 Aligned_cols=211 Identities=24% Similarity=0.338 Sum_probs=122.8
Q ss_pred CCCCCCCccHHHHHHHHHhhcC-CCCcEE-EecCCchH---HHHHHHcCC-----------hHHHHHH-HhcC---CCCC
Q 006251 179 GGHLSANLGVVELTLALHRVFN-TPDDKI-IWDVGHQA---YVHKILTGR-----------RSRMNTM-RKTS---GLAG 238 (654)
Q Consensus 179 ~GH~gsslg~vel~~aL~~v~~-~p~Dr~-I~s~GH~a---Y~~~~l~Gr-----------~~~l~~l-rq~g---gl~G 238 (654)
-||+|++.|+.-+.++|.++.+ ...|.+ |...||++ .+..+|.|. .+-|..| ||++ |+++
T Consensus 47 lGHWGt~PGlnfiyahlNrlI~~~~~~~~~v~GpGHg~pai~A~~~LeGs~se~yp~~~~d~~Gl~~L~~~FS~PgGipS 126 (379)
T PF09364_consen 47 LGHWGTSPGLNFIYAHLNRLIRKYDLDMIYVMGPGHGGPAILANLYLEGSYSEFYPDISQDEEGLRRLFRQFSFPGGIPS 126 (379)
T ss_dssp -S-TTTHHHHHHHHHHHHHHHHHHTB-B--EESSGGGHHHHHHHHHHHSHHHHHSTTS-SSHHHHHHHHHHBTSTTSB-S
T ss_pred ccccCCCccHHHHHHHHHHHHHhcCCceEEEecCCCCchhhhhhhhhcCccccccCCCCCCHHHHHHHHHhCCCCCCCcc
Confidence 5999999999999999977543 234544 66699998 566788883 2445554 7763 5556
Q ss_pred CCCCCCCCccccCcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcC----CCEEEEEECCC
Q 006251 239 FPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLD----ANLIVVLNDNK 314 (654)
Q Consensus 239 ~p~~~es~~~~fg~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~----lnLi~Il~dN~ 314 (654)
|..+ +.++...-.|-+|++++.|.|+++ .++|-.|+||+||||..+|-.--+...-.+++ ..|+-|+.-|+
T Consensus 127 H~~p-~tPGsIhEGGELGYaLshA~GA~~----DnPdliv~~vvGDGEaETGplA~sWh~~kflnP~~dGaVLPILhLNG 201 (379)
T PF09364_consen 127 HVSP-ETPGSIHEGGELGYALSHAFGAVF----DNPDLIVACVVGDGEAETGPLAASWHSNKFLNPATDGAVLPILHLNG 201 (379)
T ss_dssp SS-T-TSTT-S---SSTS-HHHHHHHHHT----T-TT-EEEEEEETTGGGSHHHHHHGGGGGSS-TTTS-EEEEEEEE-S
T ss_pred ccCc-CCCCccCcCcchhhHHHHHhhccc----CCCCeEEEEEecCCcccCCcccccccccceeCcccCceeeceEEecC
Confidence 6554 355555556888888888888876 45899999999999999985433333223333 46999999998
Q ss_pred C-CcccccccCCCCCchhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCe
Q 006251 315 Q-VSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLY 393 (654)
Q Consensus 315 ~-~s~pt~~~~g~~~~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~ 393 (654)
+ ++.||. ++.+ . -+++. .+|+.+||.
T Consensus 202 ~KI~~pTi--------l~r~---------------------------~--~~eL~----------------~lf~G~Gy~ 228 (379)
T PF09364_consen 202 YKISNPTI--------LARM---------------------------S--DEELE----------------ALFRGYGYE 228 (379)
T ss_dssp BSSSSB-H--------HHHS------------------------------HHHHH----------------HHHHHTTEE
T ss_pred ccccCCeE--------eeec---------------------------C--HHHHH----------------HHHHhCCCe
Confidence 6 433331 1111 0 13333 259999999
Q ss_pred EEeecCCCCHHHHHHHHH--------HhHh-------C-CC--CCCEEEEEEeecCCCCChh------hcCccccccccC
Q 006251 394 YIGPVDGHNVEDLVTIFQ--------RVKE-------M-PA--PGPVLIHVVTEKGKGYPPA------EAAADRMHGVVK 449 (654)
Q Consensus 394 ~ig~vDGhDi~~L~~al~--------~ak~-------~-~~--~gP~lI~v~T~KG~G~~~a------e~~~~~~Hg~~~ 449 (654)
.+ .|+|+|.+++.+.+. ++++ . .. ++..+|+++|.|||+.|.. |. ....|.++.
T Consensus 229 p~-~Veg~dp~~~h~~ma~ald~a~~~I~~iq~~Ar~~~~~~~prwPmivlRtPKGWtgP~~vdG~~iEG-t~raHQVPl 306 (379)
T PF09364_consen 229 PI-FVEGDDPADMHQAMAAALDWALEEIRAIQKAARSGNPAYRPRWPMIVLRTPKGWTGPKEVDGKPIEG-TFRAHQVPL 306 (379)
T ss_dssp EE-EEE---HHHHHHHHHHHHHHHHHHHHHHHHHHTT--SS----EEEEEEE--TTTTS-SEETTEE-TT-SGGGSS-SS
T ss_pred EE-EEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCcEEEEECCcccCCccccCCccccC-cceeeeccc
Confidence 98 899999887765442 2121 1 11 2336899999999998753 32 345566663
No 60
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=99.45 E-value=5.1e-13 Score=131.02 Aligned_cols=126 Identities=20% Similarity=0.255 Sum_probs=92.3
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchH-HHHHHHHhhcCCCEEEEEECCCC-CcccccccCCCCC
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQA-YEAMNNAGFLDANLIVVLNDNKQ-VSLPTATLDGPAT 328 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~-~EAln~A~~~~lnLi~Il~dN~~-~s~pt~~~~g~~~ 328 (654)
+.|.+|.++++|+|+++|. ++++|||++|||+++ +. +++|.+|.++++|+++||.||+. .++...+ .....
T Consensus 49 ~~g~mG~gl~~AiGa~la~----p~~~Vv~i~GDG~f~--~~g~~eL~ta~~~~l~i~vvV~nN~~~g~~~~~~-~~~~~ 121 (178)
T cd02008 49 TCTCMGASIGVAIGMAKAS----EDKKVVAVIGDSTFF--HSGILGLINAVYNKANITVVILDNRTTAMTGGQP-HPGTG 121 (178)
T ss_pred ccccCccHHHHHhhHHhhC----CCCCEEEEecChHHh--hccHHHHHHHHHcCCCEEEEEECCcceeccCCCC-CCCCc
Confidence 4688999999999999997 488999999999997 44 79999999999999888888863 2221110 00000
Q ss_pred chhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHH
Q 006251 329 PVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (654)
Q Consensus 329 ~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~ 408 (654)
.. +....-..+...++++||++++...++++++++.+
T Consensus 122 -~~------------------------------------------~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~~~~ 158 (178)
T cd02008 122 -KT------------------------------------------LTEPTTVIDIEALVRAIGVKRVVVVDPYDLKAIRE 158 (178)
T ss_pred -cc------------------------------------------ccCCCCccCHHHHHHHCCCCEEEecCccCHHHHHH
Confidence 00 00000012335679999999997668999999999
Q ss_pred HHHHhHhCCCCCCEEEEEEe
Q 006251 409 IFQRVKEMPAPGPVLIHVVT 428 (654)
Q Consensus 409 al~~ak~~~~~gP~lI~v~T 428 (654)
+++++++. ++|++|+++.
T Consensus 159 al~~a~~~--~gp~lI~v~~ 176 (178)
T cd02008 159 ELKEALAV--PGVSVIIAKR 176 (178)
T ss_pred HHHHHHhC--CCCEEEEEeC
Confidence 99998764 7999999975
No 61
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=99.45 E-value=5.4e-13 Score=129.81 Aligned_cols=125 Identities=22% Similarity=0.208 Sum_probs=88.5
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCC-CCcccccccCCCCCc
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNK-QVSLPTATLDGPATP 329 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~-~~s~pt~~~~g~~~~ 329 (654)
+.|.+|.++|+|+|+++|. ++++|||++|||+++ +..++|++|+.+++|+++||.||+ +......+
T Consensus 46 ~~g~mG~~lp~AiGa~la~----~~~~vv~i~GDG~f~--~~~~el~ta~~~~lpv~ivv~NN~~~~~~~~~~------- 112 (172)
T cd02004 46 TFGTLGVGLGYAIAAALAR----PDKRVVLVEGDGAFG--FSGMELETAVRYNLPIVVVVGNNGGWYQGLDGQ------- 112 (172)
T ss_pred CCCcccchHHHHHHHHHhC----CCCeEEEEEcchhhc--CCHHHHHHHHHcCCCEEEEEEECcccccchhhh-------
Confidence 4578999999999998875 588999999999999 667999999999999888887775 43211100
Q ss_pred hhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHH
Q 006251 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (654)
Q Consensus 330 vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~a 409 (654)
...... + . ....+.-..+...++++||+++. .|+ ++++|.++
T Consensus 113 ---------~~~~~~----------------~-~---------~~~~~~~~~d~~~la~a~G~~~~-~v~--~~~el~~a 154 (172)
T cd02004 113 ---------QLSYGL----------------G-L---------PVTTLLPDTRYDLVAEAFGGKGE-LVT--TPEELKPA 154 (172)
T ss_pred ---------hhhccC----------------C-C---------ceeccCCCCCHHHHHHHCCCeEE-EEC--CHHHHHHH
Confidence 000000 0 0 00000112234567999999998 666 69999999
Q ss_pred HHHhHhCCCCCCEEEEEEe
Q 006251 410 FQRVKEMPAPGPVLIHVVT 428 (654)
Q Consensus 410 l~~ak~~~~~gP~lI~v~T 428 (654)
++++.+. ++|++|++.+
T Consensus 155 l~~a~~~--~~p~liev~i 171 (172)
T cd02004 155 LKRALAS--GKPALINVII 171 (172)
T ss_pred HHHHHHc--CCCEEEEEEc
Confidence 9998874 7999999976
No 62
>PRK06163 hypothetical protein; Provisional
Probab=99.44 E-value=3.6e-12 Score=127.88 Aligned_cols=123 Identities=20% Similarity=0.269 Sum_probs=90.6
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhc-CCCEEEEEECCCCCcccccccCCCCCc
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFL-DANLIVVLNDNKQVSLPTATLDGPATP 329 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~-~lnLi~Il~dN~~~s~pt~~~~g~~~~ 329 (654)
+.|.+|.++|+|+|+++|. ++++|||++|||+++ |...+|.+|.++ ++|+++||.||+..... +...
T Consensus 55 ~~GsMG~glpaAiGaalA~----p~r~Vv~i~GDG~f~--m~~~eL~Ta~~~~~lpi~ivV~NN~~yg~~-----~~~~- 122 (202)
T PRK06163 55 MLGSMGLAFPIALGVALAQ----PKRRVIALEGDGSLL--MQLGALGTIAALAPKNLTIIVMDNGVYQIT-----GGQP- 122 (202)
T ss_pred eecccccHHHHHHHHHHhC----CCCeEEEEEcchHHH--HHHHHHHHHHHhcCCCeEEEEEcCCchhhc-----CCcc-
Confidence 4688999999999999985 688999999999998 778899999866 68999999999632110 0000
Q ss_pred hhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCe-EEeecCCCCHHHHHH
Q 006251 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLY-YIGPVDGHNVEDLVT 408 (654)
Q Consensus 330 vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~-~ig~vDGhDi~~L~~ 408 (654)
.. ..-.++...++++||++ .. .+ .+.++|.+
T Consensus 123 ~~---------------------------------------------~~~~~Df~~lA~a~G~~~~~-~v--~~~~el~~ 154 (202)
T PRK06163 123 TL---------------------------------------------TSQTVDVVAIARGAGLENSH-WA--ADEAHFEA 154 (202)
T ss_pred CC---------------------------------------------CCCCCCHHHHHHHCCCceEE-Ee--CCHHHHHH
Confidence 00 00012335578999997 44 34 48999999
Q ss_pred HHHHhHhCCCCCCEEEEEEeecCCCCC
Q 006251 409 IFQRVKEMPAPGPVLIHVVTEKGKGYP 435 (654)
Q Consensus 409 al~~ak~~~~~gP~lI~v~T~KG~G~~ 435 (654)
+|+++.+. ++|++|++.+......+
T Consensus 155 al~~a~~~--~~p~lIeV~i~~~~~~~ 179 (202)
T PRK06163 155 LVDQALSG--PGPSFIAVRIDDKPGVG 179 (202)
T ss_pred HHHHHHhC--CCCEEEEEEecCCCCCC
Confidence 99999864 79999999997655433
No 63
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=99.41 E-value=1.5e-11 Score=133.35 Aligned_cols=167 Identities=23% Similarity=0.298 Sum_probs=112.8
Q ss_pred ccHHHHHHHHHhhcCCCCcEEEecCCchHHHHHHHcCChHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhHHHHHHH
Q 006251 186 LGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGLGM 265 (654)
Q Consensus 186 lg~vel~~aL~~v~~~p~Dr~I~s~GH~aY~~~~l~Gr~~~l~~lrq~ggl~G~p~~~es~~~~fg~G~lG~~is~AlGm 265 (654)
++-.+++..+...+ .++|.+|.+.|-.+ + .+..+|. ..+++||... +..|++|+++|+|+|+
T Consensus 172 ~~r~~ai~~i~~~l-~~~~iVV~~~G~~s---------~-el~~~~~-~~~~~~~~~f------~~~GsMG~a~p~AlG~ 233 (361)
T TIGR03297 172 MTREEAIAAILDHL-PDNTVIVSTTGKTS---------R-ELYELRD-RIGQGHARDF------LTVGSMGHASQIALGL 233 (361)
T ss_pred CCHHHHHHHHHHhC-CCCCEEEECCCCCc---------H-HHHHhhc-ccccCCCCce------EeechhhhHHHHHHHH
Confidence 55555554443333 34677777777432 1 2233331 2245666432 3469999999999999
Q ss_pred HHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcC-CCEEEEEECCCC-CcccccccCCCCCchhhhhHHHHHhhhc
Q 006251 266 AVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLD-ANLIVVLNDNKQ-VSLPTATLDGPATPVGALSSALSKLQAS 343 (654)
Q Consensus 266 AlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~-lnLi~Il~dN~~-~s~pt~~~~g~~~~vgals~~l~~~~~~ 343 (654)
|+|. ++++|||+.|||++. |..++|.+++.++ .|+++||.||+. .++ +......
T Consensus 234 ala~----p~r~Vv~i~GDGsfl--m~~~eL~t~~~~~~~nli~VVlNNg~~~~~------g~q~~~~------------ 289 (361)
T TIGR03297 234 ALAR----PDQRVVCLDGDGAAL--MHMGGLATIGTQGPANLIHVLFNNGAHDSV------GGQPTVS------------ 289 (361)
T ss_pred HHHC----CCCCEEEEEChHHHH--HHHHHHHHHHHhCCCCeEEEEEcCcccccc------CCcCCCC------------
Confidence 9986 588999999999998 7778899999887 599999999974 321 1111000
Q ss_pred hhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHHHHhHhCCCCCCEE
Q 006251 344 TNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVL 423 (654)
Q Consensus 344 ~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al~~ak~~~~~gP~l 423 (654)
...+...++++|||... +..++.++|.++++++++. ++|++
T Consensus 290 -----------------------------------~~~d~~~iA~a~G~~~~--~~v~~~~eL~~al~~a~~~--~gp~l 330 (361)
T TIGR03297 290 -----------------------------------QHLDFAQIAKACGYAKV--YEVSTLEELETALTAASSA--NGPRL 330 (361)
T ss_pred -----------------------------------CCCCHHHHHHHCCCceE--EEeCCHHHHHHHHHHHHhC--CCcEE
Confidence 00112345889998432 2347999999999999764 78999
Q ss_pred EEEEeecCCC
Q 006251 424 IHVVTEKGKG 433 (654)
Q Consensus 424 I~v~T~KG~G 433 (654)
|++++.+|.+
T Consensus 331 IeV~v~~g~~ 340 (361)
T TIGR03297 331 IEVKVRPGSR 340 (361)
T ss_pred EEEEecCCCc
Confidence 9999987764
No 64
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=99.40 E-value=3.2e-12 Score=127.42 Aligned_cols=131 Identities=23% Similarity=0.254 Sum_probs=93.3
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCch
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~v 330 (654)
+.|++|.++|+|+|+++|. ++++|||++|||+++ |...+|.+|.++++|+++||.||+..
T Consensus 51 ~~g~mG~~lpaaiGa~la~----p~r~vv~i~GDG~f~--m~~~eL~Ta~~~~lpvi~vV~NN~~y-------------- 110 (196)
T cd02013 51 SFGNCGYALPAIIGAKAAA----PDRPVVAIAGDGAWG--MSMMEIMTAVRHKLPVTAVVFRNRQW-------------- 110 (196)
T ss_pred CCcccccHHHHHHHHHHhC----CCCcEEEEEcchHHh--ccHHHHHHHHHhCCCeEEEEEECchh--------------
Confidence 5688999999999999885 688999999999999 67788999999999999999777631
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHh-hhccCCChhhhhhhcCCeEEeecCCCCHHHHHHH
Q 006251 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYA-RGLISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (654)
Q Consensus 331 gals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~-r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~a 409 (654)
+.... .+... | +. .+. -+.-.++...++++||++++ .|+ +.++|.++
T Consensus 111 g~~~~-~q~~~----~--------------~~----------~~~~~~~~~~d~~~lA~a~G~~~~-~v~--~~~el~~a 158 (196)
T cd02013 111 GAEKK-NQVDF----Y--------------NN----------RFVGTELESESFAKIAEACGAKGI-TVD--KPEDVGPA 158 (196)
T ss_pred HHHHH-HHHHH----c--------------CC----------CcccccCCCCCHHHHHHHCCCEEE-EEC--CHHHHHHH
Confidence 11100 00000 0 00 000 01112355678999999998 555 79999999
Q ss_pred HHHhHhC-CCCCCEEEEEEeecCCC
Q 006251 410 FQRVKEM-PAPGPVLIHVVTEKGKG 433 (654)
Q Consensus 410 l~~ak~~-~~~gP~lI~v~T~KG~G 433 (654)
++++.+. ..++|++|++.+.+..+
T Consensus 159 l~~a~~~~~~~~p~liev~v~~~~~ 183 (196)
T cd02013 159 LQKAIAMMAEGKTTVIEIVCDQELG 183 (196)
T ss_pred HHHHHhcCCCCCeEEEEEEeCcccC
Confidence 9988751 12789999999976554
No 65
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=99.39 E-value=1.9e-12 Score=124.79 Aligned_cols=116 Identities=25% Similarity=0.303 Sum_probs=87.8
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhc-CCCEEEEEECCC-CCcccccccCCCCC
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFL-DANLIVVLNDNK-QVSLPTATLDGPAT 328 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~-~lnLi~Il~dN~-~~s~pt~~~~g~~~ 328 (654)
..|++|.++|+|+|+++|. +++|||++|||+++ |...+|.+++.+ ++|+++||.||+ +.++.. ..
T Consensus 40 ~~gsmG~~lp~AiGa~~a~-----~~~Vv~i~GDG~f~--m~~~el~t~~~~~~~~i~~vV~nN~~~g~~~~------~~ 106 (157)
T cd02001 40 MLGSMGLAGSIGLGLALGL-----SRKVIVVDGDGSLL--MNPGVLLTAGEFTPLNLILVVLDNRAYGSTGG------QP 106 (157)
T ss_pred eecchhhHHHHHHHHHhcC-----CCcEEEEECchHHH--hcccHHHHHHHhcCCCEEEEEEeCccccccCC------cC
Confidence 3788999999999999985 37899999999998 666789999887 599988887776 332110 00
Q ss_pred chhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHH
Q 006251 329 PVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (654)
Q Consensus 329 ~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~ 408 (654)
... ..++...++++||++++ .+ ++.++|.+
T Consensus 107 ~~~-----------------------------------------------~~~d~~~lA~a~G~~~~-~v--~~~~el~~ 136 (157)
T cd02001 107 TPS-----------------------------------------------SNVNLEAWAAACGYLVL-SA--PLLGGLGS 136 (157)
T ss_pred CCC-----------------------------------------------CCCCHHHHHHHCCCceE-Ec--CCHHHHHH
Confidence 000 01223456899999987 55 58999999
Q ss_pred HHHHhHhCCCCCCEEEEEEeecC
Q 006251 409 IFQRVKEMPAPGPVLIHVVTEKG 431 (654)
Q Consensus 409 al~~ak~~~~~gP~lI~v~T~KG 431 (654)
+++++.+. ++|++|++.+.++
T Consensus 137 al~~a~~~--~gp~vi~v~i~~~ 157 (157)
T cd02001 137 EFAGLLAT--TGPTLLHAPIAPG 157 (157)
T ss_pred HHHHHHhC--CCCEEEEEEecCC
Confidence 99999874 7999999998654
No 66
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=99.38 E-value=2.8e-12 Score=126.49 Aligned_cols=128 Identities=22% Similarity=0.371 Sum_probs=92.6
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCch
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~v 330 (654)
+.|++|.++|+|+|+++|. ++++|||++|||+++ +..++|.+|.++++|+++||.||+...
T Consensus 48 ~~g~mG~~lp~aiGa~la~----~~~~vv~i~GDG~f~--~~~~eL~ta~~~~lpi~ivV~nN~~~~------------- 108 (186)
T cd02015 48 GLGTMGFGLPAAIGAKVAR----PDKTVICIDGDGSFQ--MNIQELATAAQYNLPVKIVILNNGSLG------------- 108 (186)
T ss_pred CccchhchHHHHHHHHHhC----CCCeEEEEEcccHHh--ccHHHHHHHHHhCCCeEEEEEECCccH-------------
Confidence 4588999999999999885 578999999999999 777889999999999999888887421
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhh-hc-cCCChhhhhhhcCCeEEeecCCCCHHHHHH
Q 006251 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYAR-GL-ISASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (654)
Q Consensus 331 gals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r-~~-~~~~~~~lfea~G~~~ig~vDGhDi~~L~~ 408 (654)
.+. ..+..... +.+.. +. -..+...++++||++++ .|+ +.++|.+
T Consensus 109 -~~~-~~~~~~~~----------------------------~~~~~~~~~~~~d~~~~a~a~G~~~~-~v~--~~~el~~ 155 (186)
T cd02015 109 -MVR-QWQELFYE----------------------------GRYSHTTLDSNPDFVKLAEAYGIKGL-RVE--KPEELEA 155 (186)
T ss_pred -HHH-HHHHHHcC----------------------------CceeeccCCCCCCHHHHHHHCCCceE-EeC--CHHHHHH
Confidence 110 00000000 00000 00 12345678999999998 665 5899999
Q ss_pred HHHHhHhCCCCCCEEEEEEeecCC
Q 006251 409 IFQRVKEMPAPGPVLIHVVTEKGK 432 (654)
Q Consensus 409 al~~ak~~~~~gP~lI~v~T~KG~ 432 (654)
+++++.+. ++|++|++.|.+..
T Consensus 156 al~~a~~~--~~p~liev~~~~~~ 177 (186)
T cd02015 156 ALKEALAS--DGPVLLDVLVDPEE 177 (186)
T ss_pred HHHHHHhC--CCCEEEEEEeCCCc
Confidence 99998863 78999999997543
No 67
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=99.38 E-value=3e-12 Score=125.99 Aligned_cols=118 Identities=25% Similarity=0.283 Sum_probs=87.7
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcC-CCEEEEEECCC-CCcccccccCCCCC
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLD-ANLIVVLNDNK-QVSLPTATLDGPAT 328 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~-lnLi~Il~dN~-~~s~pt~~~~g~~~ 328 (654)
+.|++|.++|+|+|+|+|.+ ++|||++|||+++ +..+++.+|..++ .|+++||.||+ +.+. . ...
T Consensus 40 ~~g~mG~~lp~AiGaala~~-----~~vv~i~GDG~f~--m~~~el~ta~~~~~~~l~vvV~NN~~~~~~-~-----~~~ 106 (179)
T cd03372 40 MLGSMGLASSIGLGLALAQP-----RKVIVIDGDGSLL--MNLGALATIAAEKPKNLIIVVLDNGAYGST-G-----NQP 106 (179)
T ss_pred cccchhhHHHHHHHHHhcCC-----CcEEEEECCcHHH--hCHHHHHHHHHcCCCCEEEEEEcCcccccc-C-----CCC
Confidence 36889999999999999863 7899999999998 5567888888887 57877766665 4321 1 000
Q ss_pred chhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHH
Q 006251 329 PVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (654)
Q Consensus 329 ~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~ 408 (654)
.. . ....+...++++||+++. .++| +.+++.+
T Consensus 107 ~~--~--------------------------------------------~~~~d~~~lA~a~G~~~~-~v~~-~~~el~~ 138 (179)
T cd03372 107 TH--A--------------------------------------------GKKTDLEAVAKACGLDNV-ATVA-SEEAFEK 138 (179)
T ss_pred CC--C--------------------------------------------CCCCCHHHHHHHcCCCeE-EecC-CHHHHHH
Confidence 00 0 001122446899999998 6776 8999999
Q ss_pred HHHHhHhCCCCCCEEEEEEeecCCC
Q 006251 409 IFQRVKEMPAPGPVLIHVVTEKGKG 433 (654)
Q Consensus 409 al~~ak~~~~~gP~lI~v~T~KG~G 433 (654)
++++++ ++|.+|++.|.++.+
T Consensus 139 al~~a~----~gp~lIev~~~~~~~ 159 (179)
T cd03372 139 AVEQAL----DGPSFIHVKIKPGNT 159 (179)
T ss_pred HHHHhc----CCCEEEEEEEcCCCC
Confidence 999886 589999999987775
No 68
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=99.37 E-value=6.1e-12 Score=122.84 Aligned_cols=129 Identities=22% Similarity=0.258 Sum_probs=88.9
Q ss_pred cCcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCC-CcccccccCCCCC
Q 006251 250 FGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQ-VSLPTATLDGPAT 328 (654)
Q Consensus 250 fg~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~-~s~pt~~~~g~~~ 328 (654)
.+ |.+|.++|+|+|+++|. ++++|||++|||+++.+ .++|++|..+++|+++||.||+. .+..
T Consensus 47 ~~-g~mG~~lp~aiGaala~----~~~~vv~i~GDG~f~~~--~~el~ta~~~~~p~~~iV~nN~~~~~~~--------- 110 (178)
T cd02002 47 RG-GGLGWGLPAAVGAALAN----PDRKVVAIIGDGSFMYT--IQALWTAARYGLPVTVVILNNRGYGALR--------- 110 (178)
T ss_pred CC-ccccchHHHHHHHHhcC----CCCeEEEEEcCchhhcc--HHHHHHHHHhCCCeEEEEEcCccHHHHH---------
Confidence 36 99999999999999986 48899999999999955 47899999999999999999973 2110
Q ss_pred chhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhh--ccCCChhhhhhhcCCeEEeecCCCCHHHH
Q 006251 329 PVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARG--LISASGSTFFEELGLYYIGPVDGHNVEDL 406 (654)
Q Consensus 329 ~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~--~~~~~~~~lfea~G~~~ig~vDGhDi~~L 406 (654)
.++.......+.. . +....+ .-..+...+++++|+++. .++ +.+++
T Consensus 111 -------~~~~~~~~~~~~~--------------------~--~~~~~~~~~~~~d~~~~a~a~G~~~~-~v~--~~~el 158 (178)
T cd02002 111 -------SFLKRVGPEGPGE--------------------N--APDGLDLLDPGIDFAAIAKAFGVEAE-RVE--TPEEL 158 (178)
T ss_pred -------HHHHHHcCCCccc--------------------c--cccccccCCCCCCHHHHHHHcCCceE-EeC--CHHHH
Confidence 0000000000000 0 000000 011244567999999988 666 49999
Q ss_pred HHHHHHhHhCCCCCCEEEEEEe
Q 006251 407 VTIFQRVKEMPAPGPVLIHVVT 428 (654)
Q Consensus 407 ~~al~~ak~~~~~gP~lI~v~T 428 (654)
.++++++.+. ++|++|++++
T Consensus 159 ~~al~~a~~~--~~p~vi~v~v 178 (178)
T cd02002 159 DEALREALAE--GGPALIEVVV 178 (178)
T ss_pred HHHHHHHHhC--CCCEEEEEEC
Confidence 9999998863 7999999863
No 69
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=99.37 E-value=7e-12 Score=125.84 Aligned_cols=140 Identities=21% Similarity=0.277 Sum_probs=93.1
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCch
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~v 330 (654)
+.|++|.++|+|+|+++|. ++++|||++|||+++ +...+|.+|.++++|+++||-||+...
T Consensus 46 ~~gsmG~~lpaAiGa~la~----p~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~~g------------- 106 (205)
T cd02003 46 GYSCMGYEIAAGLGAKLAK----PDREVYVLVGDGSYL--MLHSEIVTAVQEGLKIIIVLFDNHGFG------------- 106 (205)
T ss_pred CcchhhhHHHHHHHHHHhC----CCCeEEEEEccchhh--ccHHHHHHHHHcCCCCEEEEEECCccH-------------
Confidence 5688999999999999885 688999999999999 455789999999999888888886321
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHH--HHhh-hccCCChhhhhhhcCCeEEeecCCCCHHHHH
Q 006251 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVD--EYAR-GLISASGSTFFEELGLYYIGPVDGHNVEDLV 407 (654)
Q Consensus 331 gals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~--~~~r-~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~ 407 (654)
.+. .++.....+.+.. ++..+.. .... +.-..+...++++||+++. .| ++.++|.
T Consensus 107 -~~~-~~q~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~-~v--~~~~el~ 164 (205)
T cd02003 107 -CIN-NLQESTGSGSFGT-----------------EFRDRDQESGQLDGALLPVDFAANARSLGARVE-KV--KTIEELK 164 (205)
T ss_pred -HHH-HHHHHhcCccccc-----------------hhcccccccccccCCCCCCCHHHHHHhCCCEEE-EE--CCHHHHH
Confidence 110 0100000000000 0000000 0000 0112355778999999988 55 5899999
Q ss_pred HHHHHhHhCCCCCCEEEEEEeecCCC
Q 006251 408 TIFQRVKEMPAPGPVLIHVVTEKGKG 433 (654)
Q Consensus 408 ~al~~ak~~~~~gP~lI~v~T~KG~G 433 (654)
++++++.+. ++|++|++.+.+...
T Consensus 165 ~al~~a~~~--~gp~lIeV~v~~~~~ 188 (205)
T cd02003 165 AALAKAKAS--DRTTVIVIKTDPKSM 188 (205)
T ss_pred HHHHHHHhC--CCCEEEEEEeecccc
Confidence 999999864 799999999976553
No 70
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=99.36 E-value=9.2e-12 Score=124.56 Aligned_cols=141 Identities=21% Similarity=0.254 Sum_probs=94.4
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCch
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~v 330 (654)
+.|++|.++|+|+|+++|. ++++|||++|||+++ |...+|.+|.++++|+++||.||+..
T Consensus 55 ~~GsmG~~lpaaiGa~la~----p~~~vv~i~GDG~f~--m~~~eL~Ta~~~~lpviivV~NN~~y-------------- 114 (202)
T cd02006 55 QAGPLGWTVPAALGVAAAD----PDRQVVALSGDYDFQ--FMIEELAVGAQHRIPYIHVLVNNAYL-------------- 114 (202)
T ss_pred CccchhhhhHHHHhHHhhC----CCCeEEEEEeChHhh--ccHHHHHHHHHhCCCeEEEEEeCchH--------------
Confidence 5688999999999999885 688999999999999 78889999999999999999999742
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHH
Q 006251 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (654)
Q Consensus 331 gals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al 410 (654)
+.+.. .+..+....+.. .... ....-....-.++...++++||+++. .|+ +.++|.++|
T Consensus 115 g~~~~-~q~~~~~~~~~~----------------~~~~-~~~~~~~~~~~~d~~~lA~a~G~~~~-~v~--~~~el~~al 173 (202)
T cd02006 115 GLIRQ-AQRAFDMDYQVN----------------LAFE-NINSSELGGYGVDHVKVAEGLGCKAI-RVT--KPEELAAAF 173 (202)
T ss_pred HHHHH-HHHHhcCccccc----------------cccc-cccccccCCCCCCHHHHHHHCCCEEE-EEC--CHHHHHHHH
Confidence 11110 000000000000 0000 00000000012456778999999987 554 799999999
Q ss_pred HHhHhC--CCCCCEEEEEEeecCC
Q 006251 411 QRVKEM--PAPGPVLIHVVTEKGK 432 (654)
Q Consensus 411 ~~ak~~--~~~gP~lI~v~T~KG~ 432 (654)
+++.+. ..++|++|++.+.+..
T Consensus 174 ~~a~~~~~~~~~p~liev~i~~~~ 197 (202)
T cd02006 174 EQAKKLMAEHRVPVVVEAILERVT 197 (202)
T ss_pred HHHHHhcccCCCcEEEEEEecccc
Confidence 998741 1378999999986544
No 71
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=99.34 E-value=4.4e-12 Score=121.04 Aligned_cols=129 Identities=19% Similarity=0.284 Sum_probs=91.8
Q ss_pred cCcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCc
Q 006251 250 FGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATP 329 (654)
Q Consensus 250 fg~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~ 329 (654)
.+.|.+|.++|+|+|+++|. ++++|||++|||++. +...+|.+|.++++|+++||.||+...
T Consensus 25 ~~~g~mG~~~~~aiGa~~a~----p~~~vv~i~GDG~f~--~~~~el~ta~~~~~~v~~vv~nN~~~~------------ 86 (153)
T PF02775_consen 25 GGFGSMGYALPAAIGAALAR----PDRPVVAITGDGSFL--MSLQELATAVRYGLPVVIVVLNNGGYG------------ 86 (153)
T ss_dssp TTTT-TTTHHHHHHHHHHHS----TTSEEEEEEEHHHHH--HHGGGHHHHHHTTSSEEEEEEESSBSH------------
T ss_pred CCccccCCHHHhhhHHHhhc----CcceeEEecCCccee--eccchhHHHhhccceEEEEEEeCCcce------------
Confidence 46799999999999999974 689999999999999 667889999999999999999997421
Q ss_pred hhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHH
Q 006251 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (654)
Q Consensus 330 vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~a 409 (654)
.. ..++.......+. ....+.+-..+...+++++|+++. .|+-.|++++.++
T Consensus 87 --~~-~~~~~~~~~~~~~------------------------~~~~~~~~~~d~~~~a~a~G~~~~-~v~~~~~~el~~a 138 (153)
T PF02775_consen 87 --MT-GGQQTPFGGGRFS------------------------GVDGKTFPNPDFAALAEAFGIKGA-RVTTPDPEELEEA 138 (153)
T ss_dssp --HH-HHHHHHTTSTCHH------------------------STBTTTSTTCGHHHHHHHTTSEEE-EESCHSHHHHHHH
T ss_pred --Ee-ccccccCcCcccc------------------------cccccccccCCHHHHHHHcCCcEE-EEccCCHHHHHHH
Confidence 11 0000000000000 000001223345678999999987 7776777999999
Q ss_pred HHHhHhCCCCCCEEEEE
Q 006251 410 FQRVKEMPAPGPVLIHV 426 (654)
Q Consensus 410 l~~ak~~~~~gP~lI~v 426 (654)
++++.+. ++|++|+|
T Consensus 139 l~~a~~~--~gp~vIeV 153 (153)
T PF02775_consen 139 LREALES--GGPAVIEV 153 (153)
T ss_dssp HHHHHHS--SSEEEEEE
T ss_pred HHHHHhC--CCcEEEEc
Confidence 9999874 89999986
No 72
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=99.32 E-value=1.9e-11 Score=115.76 Aligned_cols=149 Identities=19% Similarity=0.201 Sum_probs=112.3
Q ss_pred HHHHHhhCCcEEEEecCccCCCChhhHHHhCCCCccccchhHHHHHHHHHHHHhcCCeeEEee-hHHHHHhHHHHHHHhh
Q 006251 475 LIKEAETDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLASEGVKPFCAI-YSSFLQRGYDQVVHDV 553 (654)
Q Consensus 475 L~~~~~~d~~vvvl~aDlg~s~~l~~f~~~fp~R~id~GIaE~~mvg~AaGlA~~G~~Pi~~t-fa~Fl~ra~dQI~~~~ 553 (654)
+.+.+++..--++++-.......+-...++.+++.+..++.|++++++|.|+++.|.+|++.+ +.+|+.++++++. .+
T Consensus 3 ~~~~l~~~gv~~vfg~pg~~~~~l~~~~~~~~~~~~~~~~~E~~a~~~A~G~a~~~~~~v~~~~~gpg~~~~~~~l~-~a 81 (154)
T cd06586 3 FAEVLTAWGVRHVFGYPGDEISSLLDALREGDKRIIDTVIHELGAAGAAAGYARAGGPPVVIVTSGTGLLNAINGLA-DA 81 (154)
T ss_pred HHHHHHHcCCCEEEEcCCcchHHHHHHHhccCCceEEeeCCHHHHHHHHHHHHHhhCCEEEEEcCCCcHHHHHHHHH-HH
Confidence 344444444334444443333334333345689999999999999999999999977888887 6999999999987 67
Q ss_pred hcCCCCEEEEEecCCccCCCCCCCCChhhHHHHhcCCCCEEEecCCHHHHHHHHHHHH--hCCCCcEEEEecC
Q 006251 554 DLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAA--VIDDRPSCFRFPR 624 (654)
Q Consensus 554 a~~~lpV~~v~~~~G~~g~dG~tHq~~edla~~r~iPnl~V~~PsD~~E~~~ll~~al--~~~~~P~~ir~~r 624 (654)
+..++||+++....+..+.++.+||..+++++++.+|++.+..|++.++...+.+... ....+|++|++++
T Consensus 82 ~~~~~Pvl~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~gPv~l~ip~ 154 (154)
T cd06586 82 AAEHLPVVFLIGARGISAQAKQTFQSMFDLGMYRSIPEANISSPSPAELPAGIDHAIRTAYASQGPVVVRLPR 154 (154)
T ss_pred HhcCCCEEEEeCCCChhhhccCcccccCHHHHHHHhhheEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEccC
Confidence 7889999999877775555677899999999999999999999988877665544321 1347899999874
No 73
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=99.32 E-value=1.1e-11 Score=121.83 Aligned_cols=127 Identities=16% Similarity=0.294 Sum_probs=92.1
Q ss_pred cCcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCc
Q 006251 250 FGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATP 329 (654)
Q Consensus 250 fg~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~ 329 (654)
.+.|.+|.++|+|+|+++|. ++++|||++|||+++ +....|.+|.++++|+++||.||+..
T Consensus 45 ~~~g~mG~~lp~aiGa~la~----~~~~vv~i~GDG~f~--m~~~eL~ta~~~~l~vi~vV~NN~~~------------- 105 (177)
T cd02010 45 NGLATMGVALPGAIGAKLVY----PDRKVVAVSGDGGFM--MNSQELETAVRLKIPLVVLIWNDNGY------------- 105 (177)
T ss_pred CCChhhhhHHHHHHHHHHhC----CCCcEEEEEcchHHH--hHHHHHHHHHHHCCCeEEEEEECCcc-------------
Confidence 36788999999999999985 588999999999998 77788999999999999988888631
Q ss_pred hhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHH
Q 006251 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (654)
Q Consensus 330 vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~a 409 (654)
+.+ +..+... + ++ ...-++-..+...++++||+++. .++ +.+++.++
T Consensus 106 -g~~-~~~~~~~----~--------------~~----------~~~~~~~~~d~~~~a~a~G~~~~-~v~--~~~el~~a 152 (177)
T cd02010 106 -GLI-KWKQEKE----Y--------------GR----------DSGVDFGNPDFVKYAESFGAKGY-RIE--SADDLLPV 152 (177)
T ss_pred -hHH-HHHHHHh----c--------------CC----------cccCcCCCCCHHHHHHHCCCEEE-EEC--CHHHHHHH
Confidence 111 0000000 0 00 00000112345678999999987 554 89999999
Q ss_pred HHHhHhCCCCCCEEEEEEeec
Q 006251 410 FQRVKEMPAPGPVLIHVVTEK 430 (654)
Q Consensus 410 l~~ak~~~~~gP~lI~v~T~K 430 (654)
++++.+. ++|++|++.+..
T Consensus 153 l~~a~~~--~~p~liev~~~~ 171 (177)
T cd02010 153 LERALAA--DGVHVIDCPVDY 171 (177)
T ss_pred HHHHHhC--CCCEEEEEEecc
Confidence 9999874 799999999853
No 74
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=99.32 E-value=1.1e-11 Score=122.38 Aligned_cols=117 Identities=26% Similarity=0.350 Sum_probs=86.9
Q ss_pred cccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcC-CCEEEEEECCCC-CcccccccCCCCCc
Q 006251 252 AGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLD-ANLIVVLNDNKQ-VSLPTATLDGPATP 329 (654)
Q Consensus 252 ~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~-lnLi~Il~dN~~-~s~pt~~~~g~~~~ 329 (654)
.|++|.++|+|+|+++|. +++|||++|||+++ +..++|.+|+.++ +|+++||.||+. .++.. +.....
T Consensus 41 ~gsmG~~lpaAiGa~la~-----~~~Vv~i~GDG~f~--m~~~el~ta~~~~~~pv~~vV~NN~~yg~~~~-q~~~~~-- 110 (181)
T TIGR03846 41 LGSMGLASSIGLGLALAT-----DRTVIVIDGDGSLL--MNLGVLPTIAAESPKNLILVILDNGAYGSTGN-QPTPAS-- 110 (181)
T ss_pred ccccccHHHHHHHHHHcC-----CCcEEEEEcchHHH--hhhhHHHHHHHhCCCCeEEEEEeCCccccccC-cCCCCC--
Confidence 688999999999999985 77899999999998 5568899999888 599999988873 32110 000000
Q ss_pred hhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHH
Q 006251 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (654)
Q Consensus 330 vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~a 409 (654)
-.++...++++||+++...+ ++.++|.++
T Consensus 111 -------------------------------------------------~~~d~~~lA~a~G~~~~~~v--~~~~~l~~a 139 (181)
T TIGR03846 111 -------------------------------------------------RRTDLELVAKAAGIRNVEKV--ADEEELRDA 139 (181)
T ss_pred -------------------------------------------------CCCCHHHHHHHCCCCeEEEe--CCHHHHHHH
Confidence 01223456899999987424 589999999
Q ss_pred HHHhHhCCCCCCEEEEEEeecCC
Q 006251 410 FQRVKEMPAPGPVLIHVVTEKGK 432 (654)
Q Consensus 410 l~~ak~~~~~gP~lI~v~T~KG~ 432 (654)
|+ +.+. ++|.+|++.+.++.
T Consensus 140 l~-a~~~--~~p~li~v~~~~~~ 159 (181)
T TIGR03846 140 LK-ALAM--KGPTFIHVKVKPGN 159 (181)
T ss_pred HH-HHcC--CCCEEEEEEeCCCC
Confidence 97 6653 79999999996554
No 75
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=99.30 E-value=1.6e-11 Score=120.42 Aligned_cols=126 Identities=19% Similarity=0.284 Sum_probs=88.7
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCch
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~v 330 (654)
+.|.+|+++|+|+|+++|. ++++|+|++|||+++.+ ..+|.+|..+++|+++||.||+...
T Consensus 49 ~~g~mG~~~~~aiGa~~a~----~~~~vv~i~GDG~f~~~--~~el~t~~~~~lp~~~iv~NN~~~~------------- 109 (178)
T cd02014 49 LLATMGNGLPGAIAAKLAY----PDRQVIALSGDGGFAML--MGDLITAVKYNLPVIVVVFNNSDLG------------- 109 (178)
T ss_pred CCchhhhHHHHHHHHHHhC----CCCcEEEEEcchHHHhh--HHHHHHHHHhCCCcEEEEEECCchh-------------
Confidence 4588999999999998875 57899999999999954 5668889999999999999997311
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHH
Q 006251 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (654)
Q Consensus 331 gals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al 410 (654)
.+. ........+. +..+.-..+...++++||+++. .++ +.+++.+++
T Consensus 110 -~~~-~~~~~~~~~~----------------------------~~~~~~~~d~~~la~a~G~~~~-~v~--~~~el~~~l 156 (178)
T cd02014 110 -FIK-WEQEVMGQPE----------------------------FGVDLPNPDFAKIAEAMGIKGI-RVE--DPDELEAAL 156 (178)
T ss_pred -HHH-HHHHHhcCCc----------------------------eeccCCCCCHHHHHHHCCCeEE-EeC--CHHHHHHHH
Confidence 000 0000000000 0000011234567999999987 555 789999999
Q ss_pred HHhHhCCCCCCEEEEEEeec
Q 006251 411 QRVKEMPAPGPVLIHVVTEK 430 (654)
Q Consensus 411 ~~ak~~~~~gP~lI~v~T~K 430 (654)
+++++. ++|++|++.|.+
T Consensus 157 ~~a~~~--~~p~liev~~~~ 174 (178)
T cd02014 157 DEALAA--DGPVVIDVVTDP 174 (178)
T ss_pred HHHHhC--CCCEEEEEEeCC
Confidence 998874 799999999853
No 76
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=99.29 E-value=1.3e-11 Score=120.85 Aligned_cols=125 Identities=19% Similarity=0.259 Sum_probs=89.0
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCC-CcccccccCCCCCc
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQ-VSLPTATLDGPATP 329 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~-~s~pt~~~~g~~~~ 329 (654)
|.|.+|.++|+|+|+++|. +++|||++|||+++ |...+|.+|.++++|+++||-||+. .+....+..
T Consensus 49 g~g~mG~~l~~aiGa~la~-----~~~Vv~i~GDGsf~--m~~~eL~ta~~~~l~v~ivVlNN~~~g~~~~~~~~----- 116 (175)
T cd02009 49 GASGIDGTLSTALGIALAT-----DKPTVLLTGDLSFL--HDLNGLLLGKQEPLNLTIVVINNNGGGIFSLLPQA----- 116 (175)
T ss_pred CccchhhHHHHHHHHHhcC-----CCCEEEEEehHHHH--HhHHHHHhccccCCCeEEEEEECCCCchheeccCC-----
Confidence 5577899999999999984 68899999999999 7788999999999999888888873 221111000
Q ss_pred hhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHH
Q 006251 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (654)
Q Consensus 330 vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~a 409 (654)
.....+.. .+ .....++...++++||+++. .|+ +.++|.++
T Consensus 117 -----------~~~~~~~~------------------------~~-~~~~~~d~~~lA~a~G~~~~-~v~--~~~el~~a 157 (175)
T cd02009 117 -----------SFEDEFER------------------------LF-GTPQGLDFEHLAKAYGLEYR-RVS--SLDELEQA 157 (175)
T ss_pred -----------cccchhhh------------------------hh-cCCCCCCHHHHHHHcCCCee-eCC--CHHHHHHH
Confidence 00000000 00 00012345678999999998 554 89999999
Q ss_pred HHHhHhCCCCCCEEEEEEe
Q 006251 410 FQRVKEMPAPGPVLIHVVT 428 (654)
Q Consensus 410 l~~ak~~~~~gP~lI~v~T 428 (654)
|+++.+. ++|++|++.+
T Consensus 158 l~~a~~~--~~p~lIev~v 174 (175)
T cd02009 158 LESALAQ--DGPHVIEVKT 174 (175)
T ss_pred HHHHHhC--CCCEEEEEeC
Confidence 9999874 7999999976
No 77
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.27 E-value=6.4e-11 Score=124.91 Aligned_cols=147 Identities=18% Similarity=0.284 Sum_probs=107.2
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCC-CeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCc
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKN-NNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATP 329 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~-~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~ 329 (654)
-....|.++++|.|+++|.+.++++ ..|++++|||++.++- +|+|++|..++.|+++||.||+..+....|.. ++.+
T Consensus 67 i~~~~G~~~~~A~G~a~A~~~~~~~~~~Vva~~GDG~~~~~g-~~~l~~A~~~~~~v~~vv~dN~~~~~TGgQ~S-~~Tp 144 (300)
T PRK11864 67 LHTAFAATAAVASGIEEALKARGEKGVIVVGWAGDGGTADIG-FQALSGAAERNHDILYIMYDNEAYMNTGIQRS-SSTP 144 (300)
T ss_pred eeehhhChHHHHHHHHHHHHhhCCCCcEEEEEEccCcccccc-HHHHHHHHHhCcCEEEEEECCeeeecCCCCCC-CCCc
Confidence 4577888999999999999887664 4567799999998776 49999999999999999999986544333333 3344
Q ss_pred hhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHH
Q 006251 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (654)
Q Consensus 330 vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~a 409 (654)
.++.+..- ..|.... ..+-..++.++|..|+..++-.|+.++.++
T Consensus 145 ~ga~t~ts---------------------p~G~~~~--------------kkdi~~i~~a~g~~yVA~~~~~~~~~~~~~ 189 (300)
T PRK11864 145 YGAWTTTT---------------------PGGKREH--------------KKPVPDIMAAHKVPYVATASIAYPEDFIRK 189 (300)
T ss_pred CCCccccC---------------------CCCCcCC--------------CCCHHHHHHHcCCCEEEEEeCCCHHHHHHH
Confidence 54432100 0111100 012245688999999989998999999999
Q ss_pred HHHhHhCCCCCCEEEEEEee--cCCCCCh
Q 006251 410 FQRVKEMPAPGPVLIHVVTE--KGKGYPP 436 (654)
Q Consensus 410 l~~ak~~~~~gP~lI~v~T~--KG~G~~~ 436 (654)
+++|.+. +||.+|++.+. .++++.+
T Consensus 190 i~~A~~~--~Gps~I~~~spC~~~~~~~~ 216 (300)
T PRK11864 190 LKKAKEI--RGFKFIHLLAPCPPGWRFDP 216 (300)
T ss_pred HHHHHhC--CCCEEEEEeCCCCCCCCcCh
Confidence 9999875 79999999886 3454443
No 78
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=99.27 E-value=3e-10 Score=132.04 Aligned_cols=313 Identities=18% Similarity=0.155 Sum_probs=201.2
Q ss_pred HHHHHHHHHHHH-HcC--C---CCeEEEEEcCCCcc-cchHHHHHHHHhhcCCC---EEEEEECCCCCcccccccCCCCC
Q 006251 259 ISAGLGMAVARD-ILG--K---NNNVISVIGDGAMT-AGQAYEAMNNAGFLDAN---LIVVLNDNKQVSLPTATLDGPAT 328 (654)
Q Consensus 259 is~AlGmAlA~k-l~g--~---~~~VvaviGDGal~-eG~~~EAln~A~~~~ln---Li~Il~dN~~~s~pt~~~~g~~~ 328 (654)
=|+.-|++-|.. +.+ . ....+++-||.++. +|+++|.||+|..++.+ .|+||.||+...++.. .++.+.
T Consensus 625 dpVleGivRakQd~l~~g~~~~~vlpi~~hGdaafagQGvV~Etlnla~l~~y~tGGtIhvivNNqiGftT~p-~~~Rss 703 (1228)
T PRK12270 625 DPVLEGIVRAKQDRLDKGEEGFTVLPILLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQVGFTTAP-ESSRSS 703 (1228)
T ss_pred chHhhhhhhhhhhhhcccccCCceeEEEEeccccccCCchHHHHHHHHhccCCCCCCeEEEEEecCcccccCc-cccccc
Confidence 345668876653 222 1 33567888999974 99999999999999988 9999999985432211 111111
Q ss_pred chhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHH
Q 006251 329 PVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (654)
Q Consensus 329 ~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~ 408 (654)
.+ .. .+++.++.+.+ .|||.|+++++.
T Consensus 704 ~y---------------------------------~t-------------------d~ak~~~~Pif-hVNGdDpeAv~~ 730 (1228)
T PRK12270 704 EY---------------------------------AT-------------------DVAKMIQAPIF-HVNGDDPEAVVR 730 (1228)
T ss_pred hh---------------------------------hH-------------------HHHhhcCCCEE-eECCCCHHHHHH
Confidence 00 01 13667888888 889999999999
Q ss_pred HHHHhHhC--CCCCCEEEEEEeecCCCCChhhc----Ccccccc------ccC-C--------C--Cc------------
Q 006251 409 IFQRVKEM--PAPGPVLIHVVTEKGKGYPPAEA----AADRMHG------VVK-F--------D--PK------------ 453 (654)
Q Consensus 409 al~~ak~~--~~~gP~lI~v~T~KG~G~~~ae~----~~~~~Hg------~~~-f--------~--~~------------ 453 (654)
+.+.|.+. ..++|++|++.+++-+|+-.... ++.-|.- +.+ | | .+
T Consensus 731 va~lA~~yr~~f~~dVvIdlvcYRrrGHNEgDdPSmtqP~mY~~i~~~~svrk~yte~Ligrgdit~ee~e~~l~dy~~~ 810 (1228)
T PRK12270 731 VARLAFEYRQRFHKDVVIDLVCYRRRGHNEGDDPSMTQPLMYDLIDAKRSVRKLYTEALIGRGDITVEEAEQALRDYQGQ 810 (1228)
T ss_pred HHHHHHHHHHHcCCCeEEEEEEEeecCCCCCCCcccCCchhhhhhhhcchHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH
Confidence 98877542 24799999999999999832111 1111110 000 0 0 00
Q ss_pred -------c---ccccc--C----------CC----CchhHHH-------------------------------------H
Q 006251 454 -------T---GKQFK--T----------KS----PTLTYTQ-------------------------------------Y 470 (654)
Q Consensus 454 -------t---g~~~~--~----------~~----~~~s~~~-------------------------------------a 470 (654)
+ .+... + .. -.....+ +
T Consensus 811 Le~~f~e~re~~~~~~~~~~~~~~~~~~~~~~~Tav~~~~l~~i~da~~~~PegFt~Hpkl~~~l~~R~~m~~~g~iDWa 890 (1228)
T PRK12270 811 LERVFNEVREAEKKPPEPPESVESDQGPPAGVDTAVSAEVLERIGDAHVNLPEGFTVHPKLKPLLEKRREMAREGGIDWA 890 (1228)
T ss_pred HHHHHHHHHhcccCCCCCCCCccccccCCCCCCCCCCHHHHHHHHHHhccCCCCCccChhhHHHHHHHHHHHhcCCccHH
Confidence 0 00000 0 00 0000001 2
Q ss_pred HHHH--HHHHHhhCCcEEEEecCccCCCC------------------hhhHHHhC-CCCccccchhHHHHHHHHHHHHhc
Q 006251 471 FAES--LIKEAETDDKIVAIHAAMGGGTG------------------LNYFQKRF-PDRCFDVGIAEQHAVTFAAGLASE 529 (654)
Q Consensus 471 ~~~a--L~~~~~~d~~vvvl~aDlg~s~~------------------l~~f~~~f-p~R~id~GIaE~~mvg~AaGlA~~ 529 (654)
|++. +-.++.+...|.+.++|...++- |+.|.+.- +=-+.|..++|-+.+|+=-|++.+
T Consensus 891 ~gEllAfGsLl~eG~~VRL~GQDsrRGTF~QRHavl~D~~tg~e~~Pl~~l~~~q~~f~vydS~LSEyAa~GFEYGYSv~ 970 (1228)
T PRK12270 891 FGELLAFGSLLLEGTPVRLSGQDSRRGTFSQRHAVLIDRETGEEYTPLQNLSDDQGKFLVYDSLLSEYAAMGFEYGYSVE 970 (1228)
T ss_pred HHHHHHHHHHHhcCceeeeeccccCCcceeeeeEEEecCCCCcccCcHhhcCCCcceEEEecchhhHHHhhccceeeecC
Confidence 3332 22345555667788888664431 12222111 124689999999999999999998
Q ss_pred C--CeeEEee-hHHHH---HhHHHHHHHhh-hc--CCCCEEEEEecCCccCCCCCCCCC--hhhHHHHhcCCCCEEEecC
Q 006251 530 G--VKPFCAI-YSSFL---QRGYDQVVHDV-DL--QKLPVRFAMDRAGLVGADGPTHCG--AFDVTFMSCLPNMVVMAPS 598 (654)
Q Consensus 530 G--~~Pi~~t-fa~Fl---~ra~dQI~~~~-a~--~~lpV~~v~~~~G~~g~dG~tHq~--~edla~~r~iPnl~V~~Ps 598 (654)
. -..+.+. |.+|. |-.+|+.+... ++ |+..|++..+|+- -| .||-|++ +|-.--|.+=.||+|..|+
T Consensus 971 ~pdaLVlWEAQFGDF~NGAQtiIDefIss~e~KWgQ~S~vvlLLPHGy-EG-QGPdHSSaRiERfLqlcAe~nm~Va~ps 1048 (1228)
T PRK12270 971 RPDALVLWEAQFGDFANGAQTIIDEFISSGEAKWGQRSGVVLLLPHGY-EG-QGPDHSSARIERFLQLCAEGNMTVAQPS 1048 (1228)
T ss_pred CCcceeeehhhhcccccchHHHHHHHHhhhHhhhccccceEEEccCCc-CC-CCCCcchHHHHHHHHhhccCCeEEEccC
Confidence 5 4556666 99997 77788865432 22 5677888888763 33 6999997 5554446777999999999
Q ss_pred CHHHHHHHHH-HHHhCCCCcEEEEecCCCC
Q 006251 599 DEAELMHMVA-TAAVIDDRPSCFRFPRGNG 627 (654)
Q Consensus 599 D~~E~~~ll~-~al~~~~~P~~ir~~r~~~ 627 (654)
+|.....+|+ +++..-.+|.+++.||...
T Consensus 1049 TPA~yFHLLRrqa~~~~~rPLvVfTPKSmL 1078 (1228)
T PRK12270 1049 TPANYFHLLRRQALSGPRRPLVVFTPKSML 1078 (1228)
T ss_pred ChHHHHHHHHHHhhcCCCCCeEEEChHHhh
Confidence 9999999998 5666667899999999874
No 79
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=99.24 E-value=6.3e-11 Score=118.00 Aligned_cols=132 Identities=14% Similarity=0.163 Sum_probs=89.3
Q ss_pred ccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCC-cccchHHHHHHHHhhcCCCEEEEEECCCC-CcccccccCCCCCch
Q 006251 253 GHSSTSISAGLGMAVARDILGKNNNVISVIGDGA-MTAGQAYEAMNNAGFLDANLIVVLNDNKQ-VSLPTATLDGPATPV 330 (654)
Q Consensus 253 G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGa-l~eG~~~EAln~A~~~~lnLi~Il~dN~~-~s~pt~~~~g~~~~v 330 (654)
|.+|.++++|+|+++|. ++++|||++|||+ ++ +...+|.+|.++++|+++||.||+. .++...+... .. .
T Consensus 51 g~mG~glpaAiGa~la~----p~r~Vv~i~GDGs~f~--m~~~eL~ta~~~~lpv~iiVlnN~~yg~~~~~~~~~-~~-~ 122 (193)
T cd03375 51 TLHGRALAVATGVKLAN----PDLTVIVVSGDGDLAA--IGGNHFIHAARRNIDITVIVHNNQIYGLTKGQASPT-TP-E 122 (193)
T ss_pred hhhccHHHHHHHHHHhC----CCCeEEEEeccchHhh--ccHHHHHHHHHhCCCeEEEEEcCcccccCCCccCCC-CC-C
Confidence 77889999999998885 6899999999999 44 6678899999999999999999974 3322111000 00 0
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHH
Q 006251 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (654)
Q Consensus 331 gals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al 410 (654)
+.- .. ....+ ...-..+...+++++|+.++..+.-.+.++|.++|
T Consensus 123 ~~~------------~~---------~~~~~--------------~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al 167 (193)
T cd03375 123 GFK------------TK---------TTPYG--------------NIEEPFNPLALALAAGATFVARGFSGDIKQLKEII 167 (193)
T ss_pred CCc------------cc---------CCCCC--------------CCCCCCCHHHHHHHCCCCEEEEEecCCHHHHHHHH
Confidence 000 00 00000 00001234567999999986333346899999999
Q ss_pred HHhHhCCCCCCEEEEEEee
Q 006251 411 QRVKEMPAPGPVLIHVVTE 429 (654)
Q Consensus 411 ~~ak~~~~~gP~lI~v~T~ 429 (654)
+++.+. ++|++|++.+.
T Consensus 168 ~~al~~--~gp~vIev~~~ 184 (193)
T cd03375 168 KKAIQH--KGFSFVEVLSP 184 (193)
T ss_pred HHHHhc--CCCEEEEEECC
Confidence 999874 89999999865
No 80
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=99.24 E-value=5e-11 Score=122.33 Aligned_cols=139 Identities=20% Similarity=0.319 Sum_probs=90.9
Q ss_pred cccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCc-ccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCch
Q 006251 252 AGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAM-TAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (654)
Q Consensus 252 ~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal-~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~v 330 (654)
.|.+|.++++|+|.+++ .++++|||++|||++ + +..++|.+|.+++.|+++||.||+.......+... ....
T Consensus 61 ~gsmG~GlpaAiGa~~a----~p~r~VV~i~GDG~~~~--m~~~eL~ta~~~~~pv~~vVlNN~~yg~tg~q~~~-~~~~ 133 (235)
T cd03376 61 AAAVASGIEAALKALGR----GKDITVVAFAGDGGTAD--IGFQALSGAAERGHDILYICYDNEAYMNTGIQRSG-STPY 133 (235)
T ss_pred HHHHHHHHHHHHHHhcc----CCCCeEEEEEcCchHHh--hHHHHHHHHHHcCCCeEEEEECCcccccCCCCCCC-CCCC
Confidence 36778888888777554 468999999999995 5 77789999999999999999999843211111111 0000
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHH
Q 006251 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (654)
Q Consensus 331 gals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al 410 (654)
+.... . ...+. ++. -...-.++...+++++|+.++..++-++.+++.+++
T Consensus 134 ~~~~~------~---------------~~~g~---~~~------~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al 183 (235)
T cd03376 134 GAWTT------T---------------TPVGK---VSF------GKKQPKKDLPLIMAAHNIPYVATASVAYPEDLYKKV 183 (235)
T ss_pred CCEee------c---------------CCCCc---ccc------ccccccCCHHHHHHHcCCcEEEEEcCCCHHHHHHHH
Confidence 00000 0 00000 000 000011344567999999987656668999999999
Q ss_pred HHhHhCCCCCCEEEEEEee
Q 006251 411 QRVKEMPAPGPVLIHVVTE 429 (654)
Q Consensus 411 ~~ak~~~~~gP~lI~v~T~ 429 (654)
+++.+. ++|++|++.+.
T Consensus 184 ~~a~~~--~gP~lIev~~~ 200 (235)
T cd03376 184 KKALSI--EGPAYIHILSP 200 (235)
T ss_pred HHHHhC--CCCEEEEEECC
Confidence 999875 78999999874
No 81
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=99.23 E-value=6.7e-11 Score=116.76 Aligned_cols=123 Identities=21% Similarity=0.222 Sum_probs=85.1
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCC-CCcccccccCCCCCc
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNK-QVSLPTATLDGPATP 329 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~-~~s~pt~~~~g~~~~ 329 (654)
+.|.+|.++|+|+|+++|. ++++|+|++|||+++ +...+|.+|.++++|+++||-||+ +.+....+ +....
T Consensus 48 ~~g~mG~~l~~aiGaala~----~~~~vv~i~GDG~f~--~~~~el~ta~~~~~p~~ivV~nN~~~~~~~~~~--~~~~~ 119 (183)
T cd02005 48 LWGSIGYSVPAALGAALAA----PDRRVILLVGDGSFQ--MTVQELSTMIRYGLNPIIFLINNDGYTIERAIH--GPEAS 119 (183)
T ss_pred chhhHhhhHHHHHHHHHhC----CCCeEEEEECCchhh--ccHHHHHHHHHhCCCCEEEEEECCCcEEEEEec--cCCcC
Confidence 5688999999999999886 578999999999997 444557788888888776666665 43211100 00000
Q ss_pred hhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcC----CeEEeecCCCCHHH
Q 006251 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELG----LYYIGPVDGHNVED 405 (654)
Q Consensus 330 vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G----~~~ig~vDGhDi~~ 405 (654)
. .+....+...+++++| +.++ .+ ++.++
T Consensus 120 ~---------------------------------------------~~~~~~d~~~ia~a~G~~~~~~~~-~v--~~~~e 151 (183)
T cd02005 120 Y---------------------------------------------NDIANWNYTKLPEVFGGGGGGLSF-RV--KTEGE 151 (183)
T ss_pred c---------------------------------------------ccCCCCCHHHHHHHhCCCccccEE-Ee--cCHHH
Confidence 0 0001123355789999 5776 44 68999
Q ss_pred HHHHHHHhHhCCCCCCEEEEEEeec
Q 006251 406 LVTIFQRVKEMPAPGPVLIHVVTEK 430 (654)
Q Consensus 406 L~~al~~ak~~~~~gP~lI~v~T~K 430 (654)
+.++|+++.+. .++|++|++.+.+
T Consensus 152 l~~al~~a~~~-~~~p~liev~~~~ 175 (183)
T cd02005 152 LDEALKDALFN-RDKLSLIEVILPK 175 (183)
T ss_pred HHHHHHHHHhc-CCCcEEEEEEcCc
Confidence 99999998861 3799999999854
No 82
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=99.20 E-value=1.1e-10 Score=134.34 Aligned_cols=128 Identities=20% Similarity=0.354 Sum_probs=93.8
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCch
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~v 330 (654)
+.|++|+++|+|+|+++|. ++++|||++|||+++ +...+|.+|.++++|+++||.||+...
T Consensus 406 ~~gsmG~~~paAiGa~la~----p~~~vv~i~GDGsf~--~~~~el~Ta~~~~lpv~~vV~NN~~~g------------- 466 (578)
T PRK06546 406 RHGSMANALPHAIGAQLAD----PGRQVISMSGDGGLS--MLLGELLTVKLYDLPVKVVVFNNSTLG------------- 466 (578)
T ss_pred CcccccchhHHHHHHHHhC----CCCcEEEEEcCchHh--hhHHHHHHHHHhCCCeEEEEEECCccc-------------
Confidence 4688999999999999986 588999999999999 666789999999999999999997421
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHH
Q 006251 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (654)
Q Consensus 331 gals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al 410 (654)
.+.... ... +. ..+..+.-..+...++++||+++. .|+ +.++|.+++
T Consensus 467 -~i~~~q-~~~-------------------~~---------~~~~~~~~~~df~~lA~a~G~~~~-~v~--~~~el~~al 513 (578)
T PRK06546 467 -MVKLEM-LVD-------------------GL---------PDFGTDHPPVDYAAIAAALGIHAV-RVE--DPKDVRGAL 513 (578)
T ss_pred -cHHHHH-Hhc-------------------CC---------CcccccCCCCCHHHHHHHCCCeeE-EeC--CHHHHHHHH
Confidence 110000 000 00 000011112345678999999987 565 899999999
Q ss_pred HHhHhCCCCCCEEEEEEeecCC
Q 006251 411 QRVKEMPAPGPVLIHVVTEKGK 432 (654)
Q Consensus 411 ~~ak~~~~~gP~lI~v~T~KG~ 432 (654)
+++.+. ++|++|++.+.+..
T Consensus 514 ~~a~~~--~gp~lIev~~~~~~ 533 (578)
T PRK06546 514 REAFAH--PGPALVDVVTDPNA 533 (578)
T ss_pred HHHHhC--CCCEEEEEEeCCCc
Confidence 998864 79999999997553
No 83
>PRK08266 hypothetical protein; Provisional
Probab=99.16 E-value=2.6e-10 Score=130.10 Aligned_cols=129 Identities=24% Similarity=0.344 Sum_probs=92.4
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCch
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~v 330 (654)
+.|++|+++|+|+|++++. ++++|||++|||+++ +..++|.+|.++++|+++||.||+...
T Consensus 400 ~~GsmG~~lp~aiGa~la~----p~~~vv~v~GDG~f~--~~~~eL~ta~~~~lpv~ivv~NN~~y~------------- 460 (542)
T PRK08266 400 YQGTLGYGFPTALGAKVAN----PDRPVVSITGDGGFM--FGVQELATAVQHNIGVVTVVFNNNAYG------------- 460 (542)
T ss_pred CCcccccHHHHHHHHHHhC----CCCcEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEeCCcch-------------
Confidence 3588999999999998875 688999999999999 557899999999999999888886321
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHH
Q 006251 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (654)
Q Consensus 331 gals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al 410 (654)
.+. ..++.. |. +.. ..-+...++...++++||+++. .|+ +.++|.+++
T Consensus 461 -~~~-~~~~~~----~~-------------~~~----------~~~~~~~~d~~~la~a~G~~~~-~v~--~~~el~~al 508 (542)
T PRK08266 461 -NVR-RDQKRR----FG-------------GRV----------VASDLVNPDFVKLAESFGVAAF-RVD--SPEELRAAL 508 (542)
T ss_pred -HHH-HHHHHh----cC-------------CCc----------ccCCCCCCCHHHHHHHcCCeEE-EeC--CHHHHHHHH
Confidence 010 000000 00 000 0000112345667999999988 555 789999999
Q ss_pred HHhHhCCCCCCEEEEEEeecCC
Q 006251 411 QRVKEMPAPGPVLIHVVTEKGK 432 (654)
Q Consensus 411 ~~ak~~~~~gP~lI~v~T~KG~ 432 (654)
+++.+. ++|++|++.|.++.
T Consensus 509 ~~a~~~--~~p~liev~i~~~~ 528 (542)
T PRK08266 509 EAALAH--GGPVLIEVPVPRGS 528 (542)
T ss_pred HHHHhC--CCcEEEEEEecCCC
Confidence 998764 78999999998775
No 84
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=99.16 E-value=1.4e-10 Score=133.14 Aligned_cols=128 Identities=21% Similarity=0.275 Sum_probs=93.2
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCch
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~v 330 (654)
+.|++|+++|+|+|+++|. ++++|||++|||+++ |...+|.+|.++++|+++||.||+...
T Consensus 406 ~~G~mG~~lpaAiGa~la~----p~r~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~~g------------- 466 (574)
T PRK09124 406 NHGSMANAMPQALGAQAAH----PGRQVVALSGDGGFS--MLMGDFLSLVQLKLPVKIVVFNNSVLG------------- 466 (574)
T ss_pred CcccccchHHHHHHHHHhC----CCCeEEEEecCcHHh--ccHHHHHHHHHhCCCeEEEEEeCCccc-------------
Confidence 5688999999999999886 688999999999999 777889999999999988888886321
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHH
Q 006251 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (654)
Q Consensus 331 gals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al 410 (654)
.+. ...... .+ .++.-++-.++...++++||+++. .| ++.++|.++|
T Consensus 467 -~i~-~~~~~~---~~-------------------------~~~~~~~~~~d~~~lA~a~G~~~~-~v--~~~~eL~~al 513 (574)
T PRK09124 467 -FVA-MEMKAG---GY-------------------------LTDGTDLHNPDFAAIAEACGITGI-RV--EKASELDGAL 513 (574)
T ss_pred -cHH-HHHHhc---CC-------------------------ccccCcCCCCCHHHHHHHCCCeEE-Ee--CCHHHHHHHH
Confidence 110 000000 00 000011112355678999999988 55 4899999999
Q ss_pred HHhHhCCCCCCEEEEEEeecCC
Q 006251 411 QRVKEMPAPGPVLIHVVTEKGK 432 (654)
Q Consensus 411 ~~ak~~~~~gP~lI~v~T~KG~ 432 (654)
+++.+. ++|++|++.+.+..
T Consensus 514 ~~a~~~--~~p~lIev~i~~~~ 533 (574)
T PRK09124 514 QRAFAH--DGPALVDVVTAKQE 533 (574)
T ss_pred HHHHhC--CCCEEEEEEecCcc
Confidence 998864 78999999986443
No 85
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.15 E-value=1.5e-10 Score=132.20 Aligned_cols=128 Identities=20% Similarity=0.261 Sum_probs=94.9
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCch
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~v 330 (654)
+.|.+|.++|+|+|+++|. +++.|||++|||+++ |..++|.+|.++++|+++||.||+...
T Consensus 406 ~~GtMG~glPaAIGAkla~----P~r~Vv~i~GDG~F~--m~~qEL~Ta~r~~lpv~ivv~nN~~~g------------- 466 (550)
T COG0028 406 GLGTMGFGLPAAIGAKLAA----PDRKVVAIAGDGGFM--MNGQELETAVRYGLPVKIVVLNNGGYG------------- 466 (550)
T ss_pred CCccccchHHHHHHHHhhC----CCCcEEEEEcccHHh--ccHHHHHHHHHhCCCEEEEEEECCccc-------------
Confidence 5788999999999998886 589999999999999 889999999999999999999998421
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHH
Q 006251 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (654)
Q Consensus 331 gals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al 410 (654)
.+..+.......+ .+..++..+....++|+||++.+ .|+ +.++|.++|
T Consensus 467 -~v~~~q~~~~~~~----------------------------~~~~~~~~~~f~klAea~G~~g~-~v~--~~~el~~al 514 (550)
T COG0028 467 -MVRQWQELFYGGR----------------------------YSGTDLGNPDFVKLAEAYGAKGI-RVE--TPEELEEAL 514 (550)
T ss_pred -cchHHHHHhcCCC----------------------------cceeecCCccHHHHHHHcCCeeE-EeC--CHHHHHHHH
Confidence 1111000000000 00011111114567999999998 565 999999999
Q ss_pred HHhHhCCCCCCEEEEEEeecC
Q 006251 411 QRVKEMPAPGPVLIHVVTEKG 431 (654)
Q Consensus 411 ~~ak~~~~~gP~lI~v~T~KG 431 (654)
+++.+. ++|++|++.+.+.
T Consensus 515 ~~al~~--~~p~lidv~id~~ 533 (550)
T COG0028 515 EEALAS--DGPVLIDVVVDPE 533 (550)
T ss_pred HHHHhC--CCCEEEEEEecCc
Confidence 999885 7999999999765
No 86
>PRK07524 hypothetical protein; Provisional
Probab=99.15 E-value=2.1e-10 Score=130.65 Aligned_cols=129 Identities=21% Similarity=0.263 Sum_probs=94.6
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCch
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~v 330 (654)
+.|.+|.++|+|+|+++|. ++++|||++|||+++ |...+|.+|.++++|+++||.||+..
T Consensus 405 ~~g~mG~~lp~aiGa~lA~----p~~~vv~i~GDG~f~--~~~~el~ta~~~~lpi~~vV~NN~~~-------------- 464 (535)
T PRK07524 405 GYGTLGYGLPAAIGAALGA----PERPVVCLVGDGGLQ--FTLPELASAVEADLPLIVLLWNNDGY-------------- 464 (535)
T ss_pred CcccccchHHHHHHHHHhC----CCCcEEEEEcchHHh--hhHHHHHHHHHhCCCeEEEEEECCch--------------
Confidence 4689999999999999985 688999999999998 66677999999999999999998631
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHH
Q 006251 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (654)
Q Consensus 331 gals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al 410 (654)
+.+...+.. . . .. ....++..++...++++||+++. .|+ +.++|.+++
T Consensus 465 g~i~~~~~~-~-------------~-----~~----------~~~~~~~~~d~~~~A~a~G~~~~-~v~--~~~el~~al 512 (535)
T PRK07524 465 GEIRRYMVA-R-------------D-----IE----------PVGVDPYTPDFIALARAFGCAAE-RVA--DLEQLQAAL 512 (535)
T ss_pred HHHHHHHHH-h-------------c-----CC----------ccccCCCCCCHHHHHHHCCCcEE-EeC--CHHHHHHHH
Confidence 111000000 0 0 00 00011122345678999999987 564 899999999
Q ss_pred HHhHhCCCCCCEEEEEEeecCCC
Q 006251 411 QRVKEMPAPGPVLIHVVTEKGKG 433 (654)
Q Consensus 411 ~~ak~~~~~gP~lI~v~T~KG~G 433 (654)
+++.+. ++|++|+|.+.+-.+
T Consensus 513 ~~a~~~--~~p~liev~~~~~~~ 533 (535)
T PRK07524 513 RAAFAR--PGPTLIEVDQACWFA 533 (535)
T ss_pred HHHHhC--CCCEEEEEECCcccc
Confidence 999874 789999999976554
No 87
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=99.15 E-value=2.2e-10 Score=131.71 Aligned_cols=127 Identities=21% Similarity=0.345 Sum_probs=91.9
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCC-CcccccccCCCCCc
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQ-VSLPTATLDGPATP 329 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~-~s~pt~~~~g~~~~ 329 (654)
|.|++|.++|+|+|+++|. ++++|||++|||+++ |.+++|++|.++++|+++||.||+. ......+ . ..
T Consensus 435 g~gsmG~~l~~aiGa~la~----~~~~vv~i~GDGsf~--~~~~el~ta~~~~l~~~~vv~NN~~~g~~~~~~-~---~~ 504 (578)
T PRK06112 435 GLAGLGWGVPMAIGAKVAR----PGAPVICLVGDGGFA--HVWAELETARRMGVPVTIVVLNNGILGFQKHAE-T---VK 504 (578)
T ss_pred CccccccHHHHHHHHHhhC----CCCcEEEEEcchHHH--hHHHHHHHHHHhCCCeEEEEEeCCccCCEEecc-c---cc
Confidence 5688999999999998874 688999999999997 8899999999999999999999973 2111000 0 00
Q ss_pred hhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHH
Q 006251 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (654)
Q Consensus 330 vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~a 409 (654)
.+. ... ..+.-..+...++++||+++. .|+ +.++|.++
T Consensus 505 ~~~------------------------------~~~---------~~~~~~~d~~~~A~a~G~~~~-~v~--~~~el~~a 542 (578)
T PRK06112 505 FGT------------------------------HTD---------ACHFAAVDHAAIARACGCDGV-RVE--DPAELAQA 542 (578)
T ss_pred cCC------------------------------ccc---------cCcCCCCCHHHHHHHCCCeEE-EeC--CHHHHHHH
Confidence 000 000 000011234567999999988 554 79999999
Q ss_pred HHHhHhCCCCCCEEEEEEeecC
Q 006251 410 FQRVKEMPAPGPVLIHVVTEKG 431 (654)
Q Consensus 410 l~~ak~~~~~gP~lI~v~T~KG 431 (654)
++++.+. ++|++|+|.+.+.
T Consensus 543 l~~a~~~--~gp~lIev~~~~~ 562 (578)
T PRK06112 543 LAAAMAA--PGPTLIEVITDPS 562 (578)
T ss_pred HHHHHhC--CCCEEEEEEcCcc
Confidence 9998764 7999999999654
No 88
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=99.14 E-value=2.5e-10 Score=130.69 Aligned_cols=127 Identities=17% Similarity=0.272 Sum_probs=92.7
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCch
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~v 330 (654)
+.|.+|.++|+|+|+++|. ++++|||++|||+++ +..++|.+|..+++|+++||.||+..
T Consensus 413 ~~g~mG~glpaaiGa~la~----p~~~vv~i~GDGsf~--~~~~el~ta~~~~l~i~~vv~nN~~~-------------- 472 (557)
T PRK08199 413 TSGSMGYGLPAAIAAKLLF----PERTVVAFAGDGCFL--MNGQELATAVQYGLPIIVIVVNNGMY-------------- 472 (557)
T ss_pred CCccccchHHHHHHHHHhC----CCCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCCcc--------------
Confidence 3588999999999998875 688999999999999 78899999999999999999999731
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHh-hhccCCChhhhhhhcCCeEEeecCCCCHHHHHHH
Q 006251 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYA-RGLISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (654)
Q Consensus 331 gals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~-r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~a 409 (654)
+.+...... .|. + .+. -+.-..+...++++||+++. .|+ +.++|.++
T Consensus 473 ~~~~~~~~~-----~~~-------------~-----------~~~~~~~~~~d~~~~a~a~G~~~~-~v~--~~~el~~a 520 (557)
T PRK08199 473 GTIRMHQER-----EYP-------------G-----------RVSGTDLTNPDFAALARAYGGHGE-TVE--RTEDFAPA 520 (557)
T ss_pred hHHHHHHHH-----hcC-------------C-----------ccccccCCCCCHHHHHHHCCCeEE-EeC--CHHHHHHH
Confidence 111000000 000 0 000 01112345678999999987 565 79999999
Q ss_pred HHHhHhCCCCCCEEEEEEeecC
Q 006251 410 FQRVKEMPAPGPVLIHVVTEKG 431 (654)
Q Consensus 410 l~~ak~~~~~gP~lI~v~T~KG 431 (654)
++++.+. ++|++|+|.|.+.
T Consensus 521 l~~a~~~--~gp~li~v~~~~~ 540 (557)
T PRK08199 521 FERALAS--GKPALIEIRIDPE 540 (557)
T ss_pred HHHHHhC--CCCEEEEEEeCHH
Confidence 9998863 7899999999653
No 89
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=99.13 E-value=2.9e-10 Score=129.63 Aligned_cols=128 Identities=17% Similarity=0.304 Sum_probs=93.9
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCch
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~v 330 (654)
+.|++|+++|+|+|+++|. ++++|||++|||+++ |...+|.+|.++++|+++||.||+...
T Consensus 406 ~~g~mG~~lpaaiGa~la~----~~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpi~ivV~NN~~y~------------- 466 (539)
T TIGR02418 406 GMQTLGVALPWAIGAALVR----PNTKVVSVSGDGGFL--FSSMELETAVRLKLNIVHIIWNDNGYN------------- 466 (539)
T ss_pred CccccccHHHHHHHHHHhC----CCCcEEEEEcchhhh--chHHHHHHHHHhCCCeEEEEEECCcch-------------
Confidence 5789999999999999986 588999999999999 788889999999999998888886321
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHH
Q 006251 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (654)
Q Consensus 331 gals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al 410 (654)
.+. ..+. ..|. + ...-+.-..+...++++||+++. .| ++.++|.++|
T Consensus 467 -~~~-~~~~----~~~~----------------------~--~~~~~~~~~d~~~lA~a~G~~~~-~V--~~~~eL~~al 513 (539)
T TIGR02418 467 -MVE-FQEE----MKYQ----------------------R--SSGVDFGPIDFVKYAESFGAKGL-RV--ESPDQLEPTL 513 (539)
T ss_pred -HHH-HHHH----HhcC----------------------C--cccccCCCCCHHHHHHHCCCeEE-EE--CCHHHHHHHH
Confidence 110 0000 0000 0 00001113456778999999988 45 4899999999
Q ss_pred HHhHhCCCCCCEEEEEEeecCC
Q 006251 411 QRVKEMPAPGPVLIHVVTEKGK 432 (654)
Q Consensus 411 ~~ak~~~~~gP~lI~v~T~KG~ 432 (654)
+++.+. ++|++|++.+.+..
T Consensus 514 ~~a~~~--~~p~lIev~v~~~~ 533 (539)
T TIGR02418 514 RQAMEV--EGPVVVDIPVDYSD 533 (539)
T ss_pred HHHHhC--CCCEEEEEEecCcc
Confidence 999864 78999999986443
No 90
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=99.13 E-value=2.4e-10 Score=130.65 Aligned_cols=126 Identities=17% Similarity=0.314 Sum_probs=92.7
Q ss_pred CcccchhhHHHHHHHHHHHHHcCC-CCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCc
Q 006251 251 GAGHSSTSISAGLGMAVARDILGK-NNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATP 329 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~-~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~ 329 (654)
+.|++|.++++|+|+++|. + +++|||++|||+++ |...+|.+|.++++|+++||.||+...
T Consensus 394 ~~g~mG~glpaaiGa~la~----p~~~~Vv~i~GDGsf~--~~~~eL~Ta~~~~lpi~ivV~NN~~~g------------ 455 (549)
T PRK06457 394 WLGSMGIGVPGSVGASFAV----ENKRQVISFVGDGGFT--MTMMELITAKKYDLPVKIIIYNNSKLG------------ 455 (549)
T ss_pred CcchhhhhHHHHHHHHhcC----CCCCeEEEEEcccHHh--hhHHHHHHHHHHCCCeEEEEEECCccc------------
Confidence 4689999999999999885 4 78999999999999 788899999999999999988887321
Q ss_pred hhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHH
Q 006251 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (654)
Q Consensus 330 vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~a 409 (654)
.+.. .+... + .+.+..+.-.++..+++++||+++. .| .+.++|..+
T Consensus 456 --~i~~-~q~~~-------------------~---------~~~~~~~~~~~d~~~lA~a~G~~~~-~v--~~~~el~~a 501 (549)
T PRK06457 456 --MIKF-EQEVM-------------------G---------YPEWGVDLYNPDFTKIAESIGFKGF-RL--EEPKEAEEI 501 (549)
T ss_pred --hHHH-HHHHh-------------------c---------CCcccccCCCCCHHHHHHHCCCeEE-Ee--CCHHHHHHH
Confidence 1100 00000 0 0000011112355678999999998 55 489999999
Q ss_pred HHHhHhCCCCCCEEEEEEeec
Q 006251 410 FQRVKEMPAPGPVLIHVVTEK 430 (654)
Q Consensus 410 l~~ak~~~~~gP~lI~v~T~K 430 (654)
++++.+. ++|++|+|.+.+
T Consensus 502 l~~a~~~--~~p~lIeV~i~~ 520 (549)
T PRK06457 502 IEEFLNT--KGPAVLDAIVDP 520 (549)
T ss_pred HHHHHhC--CCCEEEEEEeCc
Confidence 9999864 789999999964
No 91
>PRK08611 pyruvate oxidase; Provisional
Probab=99.12 E-value=3.3e-10 Score=130.29 Aligned_cols=128 Identities=20% Similarity=0.267 Sum_probs=93.6
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCch
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~v 330 (654)
+.|++|.++++|+|+++|. ++++|||++|||+++ |...+|.+|.++++|+++||.||+..
T Consensus 406 ~~g~mG~glpaaiGa~la~----p~~~Vv~i~GDGsf~--m~~~eL~Ta~r~~l~~iivV~NN~~~-------------- 465 (576)
T PRK08611 406 WLGTMGCGLPGAIAAKIAF----PDRQAIAICGDGGFS--MVMQDFVTAVKYKLPIVVVVLNNQQL-------------- 465 (576)
T ss_pred CchhhhhhHHHHHHHHHhC----CCCcEEEEEcccHHh--hhHHHHHHHHHhCCCeEEEEEeCCcc--------------
Confidence 4588999999999999875 688999999999999 77899999999999998888888631
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHH
Q 006251 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (654)
Q Consensus 331 gals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al 410 (654)
+.+. ..+..+.. ..+..++-..+...++++||.++. .| ++.++|.++|
T Consensus 466 g~i~-~~q~~~~~----------------------------~~~~~~~~~~d~~~lA~a~G~~~~-~v--~~~~eL~~al 513 (576)
T PRK08611 466 AFIK-YEQQAAGE----------------------------LEYAIDLSDMDYAKFAEACGGKGY-RV--EKAEELDPAF 513 (576)
T ss_pred hHHH-HHHHHhcC----------------------------CcccccCCCCCHHHHHHHCCCeEE-Ee--CCHHHHHHHH
Confidence 1110 00000000 000011112355778999999988 44 6899999999
Q ss_pred HHhHhCCCCCCEEEEEEeecCC
Q 006251 411 QRVKEMPAPGPVLIHVVTEKGK 432 (654)
Q Consensus 411 ~~ak~~~~~gP~lI~v~T~KG~ 432 (654)
+++.+. ++|++|++.+.+..
T Consensus 514 ~~a~~~--~~p~lIeV~vd~~~ 533 (576)
T PRK08611 514 EEALAQ--DKPVIIDVYVDPNA 533 (576)
T ss_pred HHHHhC--CCCEEEEEEeCCcc
Confidence 998864 79999999997543
No 92
>PRK07064 hypothetical protein; Provisional
Probab=99.11 E-value=2.9e-10 Score=129.64 Aligned_cols=126 Identities=21% Similarity=0.358 Sum_probs=92.1
Q ss_pred ccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCchhh
Q 006251 253 GHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGA 332 (654)
Q Consensus 253 G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~vga 332 (654)
|++|.++|+|+|+++|. ++++|||++|||+++ |...+|.+|.++++|+++||.||+.. +.
T Consensus 405 g~mG~~lpaAiGa~lA~----p~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~y--------------g~ 464 (544)
T PRK07064 405 GGIGQGLAMAIGAALAG----PGRKTVGLVGDGGLM--LNLGELATAVQENANMVIVLMNDGGY--------------GV 464 (544)
T ss_pred CccccccchhhhhhhhC----cCCcEEEEEcchHhh--hhHHHHHHHHHhCCCeEEEEEeCChh--------------HH
Confidence 78999999999999985 688999999999999 77789999999999999998888731 11
Q ss_pred hhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHHHH
Q 006251 333 LSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQR 412 (654)
Q Consensus 333 ls~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al~~ 412 (654)
+.. .+... | + .+...-++-.++...++++||+++. .| .+.++|.+++++
T Consensus 465 ~~~-~~~~~----~--------------~---------~~~~~~~~~~~d~~~lA~a~G~~~~-~v--~~~~eL~~al~~ 513 (544)
T PRK07064 465 IRN-IQDAQ----Y--------------G---------GRRYYVELHTPDFALLAASLGLPHW-RV--TSADDFEAVLRE 513 (544)
T ss_pred HHH-HHHHh----c--------------C---------CccccccCCCCCHHHHHHHCCCeEE-Ee--CCHHHHHHHHHH
Confidence 100 00000 0 0 0000011123456778999999987 45 489999999999
Q ss_pred hHhCCCCCCEEEEEEeecC
Q 006251 413 VKEMPAPGPVLIHVVTEKG 431 (654)
Q Consensus 413 ak~~~~~gP~lI~v~T~KG 431 (654)
+.+. ++|++|++.+...
T Consensus 514 a~~~--~~p~lIeV~~~~~ 530 (544)
T PRK07064 514 ALAK--EGPVLVEVDMLSI 530 (544)
T ss_pred HHcC--CCCEEEEEEcccc
Confidence 8864 7899999998633
No 93
>PRK06154 hypothetical protein; Provisional
Probab=99.11 E-value=2.8e-10 Score=130.57 Aligned_cols=128 Identities=21% Similarity=0.263 Sum_probs=93.3
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCC-cccccccCCCCCc
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQV-SLPTATLDGPATP 329 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~-s~pt~~~~g~~~~ 329 (654)
+.|++|+++++|+|+++|. ++++|||++|||+++ |..++|.+|.++++|+++||.||+.. .....
T Consensus 429 ~~gsmG~glpaaiGa~la~----p~r~Vv~i~GDG~f~--m~~~EL~Ta~r~~lpi~~vV~NN~~yg~~~~~-------- 494 (565)
T PRK06154 429 KTTQLGYGLGLAMGAKLAR----PDALVINLWGDAAFG--MTGMDFETAVRERIPILTILLNNFSMGGYDKV-------- 494 (565)
T ss_pred CCcccccHHHHHHHHHHhC----CCCcEEEEEcchHHh--ccHHHHHHHHHhCCCeEEEEEECCccceeehh--------
Confidence 4588999999999999985 689999999999998 78889999999999999999999732 11000
Q ss_pred hhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHH
Q 006251 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (654)
Q Consensus 330 vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~a 409 (654)
. ..+. ..+ ...+ ..++..+++++||.++. .|+ +.++|.++
T Consensus 495 -------~-~~~~-~~~---------------------------~~~~-~~~df~~lA~a~G~~g~-~V~--~~~el~~a 534 (565)
T PRK06154 495 -------M-PVST-TKY---------------------------RATD-ISGDYAAIARALGGYGE-RVE--DPEMLVPA 534 (565)
T ss_pred -------h-hhhc-Ccc---------------------------cccC-CCCCHHHHHHHCCCeEE-EEC--CHHHHHHH
Confidence 0 0000 000 0000 12355678999999988 554 89999999
Q ss_pred HHHhHhC-CCCCCEEEEEEeecCC
Q 006251 410 FQRVKEM-PAPGPVLIHVVTEKGK 432 (654)
Q Consensus 410 l~~ak~~-~~~gP~lI~v~T~KG~ 432 (654)
|+++.+. ..++|++|++.+.+..
T Consensus 535 l~~a~~~~~~~~p~lIev~v~~~~ 558 (565)
T PRK06154 535 LLRALRKVKEGTPALLEVITSEET 558 (565)
T ss_pred HHHHHhhccCCCeEEEEEEeChHH
Confidence 9998752 1378999999986544
No 94
>PRK12474 hypothetical protein; Provisional
Probab=99.10 E-value=4.9e-10 Score=127.28 Aligned_cols=128 Identities=20% Similarity=0.254 Sum_probs=90.3
Q ss_pred ccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCchhh
Q 006251 253 GHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGA 332 (654)
Q Consensus 253 G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~vga 332 (654)
|++|+++|+|+|+++|. ++++|||++|||+++ |..++|.+|.++++|+++||.||+.. +.
T Consensus 389 gsmG~glpaAiGa~lA~----p~r~vv~i~GDG~f~--m~~qEL~Ta~r~~lpv~iiV~NN~~y--------------~~ 448 (518)
T PRK12474 389 GSIGQGLPLAAGAAVAA----PDRKVVCPQGDGGAA--YTMQALWTMARENLDVTVVIFANRSY--------------AI 448 (518)
T ss_pred CccCccHHHHHHHHHHC----CCCcEEEEEcCchhc--chHHHHHHHHHHCCCcEEEEEcCCcc--------------hH
Confidence 99999999999999986 689999999999999 88899999999999999999999732 11
Q ss_pred hhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhcc--CCChhhhhhhcCCeEEeecCCCCHHHHHHHH
Q 006251 333 LSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLI--SASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (654)
Q Consensus 333 ls~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~--~~~~~~lfea~G~~~ig~vDGhDi~~L~~al 410 (654)
+...+........++ . ...+ -+.. ..+...++++||+++. .|+ +.++|.+++
T Consensus 449 i~~~~~~~~~~~~~~---------------~-------~~~~-~~~~~~~~d~~~lA~a~G~~~~-rv~--~~~eL~~al 502 (518)
T PRK12474 449 LNGELQRVGAQGAGR---------------N-------ALSM-LDLHNPELNWMKIAEGLGVEAS-RAT--TAEEFSAQY 502 (518)
T ss_pred HHHHHHhhcCCCCCc---------------c-------cccc-ccCCCCCCCHHHHHHHCCCeEE-EeC--CHHHHHHHH
Confidence 100000000000000 0 0000 0011 1245778999999987 554 799999999
Q ss_pred HHhHhCCCCCCEEEEEEe
Q 006251 411 QRVKEMPAPGPVLIHVVT 428 (654)
Q Consensus 411 ~~ak~~~~~gP~lI~v~T 428 (654)
+++.+. ++|++|++.+
T Consensus 503 ~~a~~~--~~p~liev~~ 518 (518)
T PRK12474 503 AAAMAQ--RGPRLIEAMI 518 (518)
T ss_pred HHHHcC--CCCEEEEEEC
Confidence 999864 7999999864
No 95
>PRK05858 hypothetical protein; Provisional
Probab=99.10 E-value=6.8e-10 Score=126.79 Aligned_cols=128 Identities=20% Similarity=0.183 Sum_probs=93.9
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCch
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~v 330 (654)
+.|++|+++++|+|+++|. ++++|||++|||+++ |...+|.+|.++++|+++||.||+..
T Consensus 405 ~~gsmG~~lp~aiGa~la~----p~r~vv~i~GDG~f~--~~~~eL~Ta~~~~lpi~ivV~NN~~y-------------- 464 (542)
T PRK05858 405 PFGCLGTGPGYALAARLAR----PSRQVVLLQGDGAFG--FSLMDVDTLVRHNLPVVSVIGNNGIW-------------- 464 (542)
T ss_pred CccccccchhHHHHHHHhC----CCCcEEEEEcCchhc--CcHHHHHHHHHcCCCEEEEEEeCCch--------------
Confidence 4588999999999999886 688999999999999 77889999999999999999999732
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhc-cCCChhhhhhhcCCeEEeecCCCCHHHHHHH
Q 006251 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGL-ISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (654)
Q Consensus 331 gals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~-~~~~~~~lfea~G~~~ig~vDGhDi~~L~~a 409 (654)
+.+.......+ +.. ...+. -..+..+++++||..+. .|+ +.++|.++
T Consensus 465 ~~~~~~~~~~~-------------------~~~----------~~~~~~~~~d~~~lA~a~G~~~~-~v~--~~~eL~~a 512 (542)
T PRK05858 465 GLEKHPMEALY-------------------GYD----------VAADLRPGTRYDEVVRALGGHGE-LVT--VPAELGPA 512 (542)
T ss_pred hhHHHHHHHhc-------------------CCc----------cccccCCCCCHHHHHHHCCCeEE-EeC--CHHHHHHH
Confidence 11100000000 000 00011 12456778999999887 554 89999999
Q ss_pred HHHhHhCCCCCCEEEEEEeecCC
Q 006251 410 FQRVKEMPAPGPVLIHVVTEKGK 432 (654)
Q Consensus 410 l~~ak~~~~~gP~lI~v~T~KG~ 432 (654)
++++.+. ++|++|++.|.+..
T Consensus 513 l~~a~~~--~~p~lIev~~~~~~ 533 (542)
T PRK05858 513 LERAFAS--GVPYLVNVLTDPSV 533 (542)
T ss_pred HHHHHhC--CCcEEEEEEECCCc
Confidence 9998764 79999999997553
No 96
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.09 E-value=5.8e-10 Score=128.59 Aligned_cols=129 Identities=13% Similarity=0.300 Sum_probs=94.4
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCch
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~v 330 (654)
+.|++|+++|+|+|+++|. ++++|||++|||+++ |...+|.+|.++++|+++||.||+..
T Consensus 435 ~~gsmG~glpaaiGa~lA~----p~r~Vv~i~GDGsf~--m~~~eL~Ta~r~~lpviivV~NN~~~-------------- 494 (587)
T PRK06965 435 GLGTMGVGLPYAMGIKMAH----PDDDVVCITGEGSIQ--MCIQELSTCLQYDTPVKIISLNNRYL-------------- 494 (587)
T ss_pred CcccccchHHHHHHHHHhC----CCCcEEEEEcchhhh--cCHHHHHHHHHcCCCeEEEEEECCcc--------------
Confidence 5589999999999999986 588999999999999 78899999999999999999999742
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhh-hc-cCCChhhhhhhcCCeEEeecCCCCHHHHHH
Q 006251 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYAR-GL-ISASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (654)
Q Consensus 331 gals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r-~~-~~~~~~~lfea~G~~~ig~vDGhDi~~L~~ 408 (654)
+.+.. .+..+.. + .+.. .. ..++...++++||+++. .| ++.++|.+
T Consensus 495 ~~i~~-~q~~~~~-----------------~-----------~~~~~~~~~~~d~~~iA~a~G~~~~-~v--~~~~eL~~ 542 (587)
T PRK06965 495 GMVRQ-WQEIEYS-----------------K-----------RYSHSYMDALPDFVKLAEAYGHVGM-RI--EKTSDVEP 542 (587)
T ss_pred hHHHH-HHHHhcC-----------------C-----------CccccCCCCCCCHHHHHHHCCCEEE-EE--CCHHHHHH
Confidence 11110 0000000 0 0000 00 12355778999999988 45 58999999
Q ss_pred HHHHhHhCCCCCCEEEEEEeecCC
Q 006251 409 IFQRVKEMPAPGPVLIHVVTEKGK 432 (654)
Q Consensus 409 al~~ak~~~~~gP~lI~v~T~KG~ 432 (654)
+|+++.+. .++|++|++.+.+..
T Consensus 543 al~~a~~~-~~~p~lieV~i~~~~ 565 (587)
T PRK06965 543 ALREALRL-KDRTVFLDFQTDPTE 565 (587)
T ss_pred HHHHHHhc-CCCcEEEEEEecccc
Confidence 99998763 268999999997544
No 97
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.09 E-value=7.6e-10 Score=127.83 Aligned_cols=129 Identities=19% Similarity=0.284 Sum_probs=93.5
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCch
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~v 330 (654)
+.|++|+++|+|+|+++|. ++++|||++|||+++ |...+|.+|.++++|+++||.||+..
T Consensus 428 ~~gsmG~glpaaiGa~lA~----p~r~Vv~i~GDG~f~--m~~~EL~Ta~r~~lpvi~vV~NN~~y-------------- 487 (595)
T PRK09107 428 GLGTMGYGLPAALGVQIAH----PDALVIDIAGDASIQ--MCIQEMSTAVQYNLPVKIFILNNQYM-------------- 487 (595)
T ss_pred CchhhhhhHHHHHHHHHhC----CCCeEEEEEcCchhh--ccHHHHHHHHHhCCCeEEEEEeCCcc--------------
Confidence 4588999999999999985 688999999999999 77788999999999999999999742
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHH
Q 006251 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (654)
Q Consensus 331 gals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al 410 (654)
+.+.. .+.... ++..... + ....++...++++||.++. .| .+.++|.++|
T Consensus 488 ~~i~~-~q~~~~------------------~~~~~~~------~--~~~~~d~~~lA~a~G~~~~-~v--~~~~el~~al 537 (595)
T PRK09107 488 GMVRQ-WQQLLH------------------GNRLSHS------Y--TEAMPDFVKLAEAYGAVGI-RC--EKPGDLDDAI 537 (595)
T ss_pred HHHHH-HHHHHh------------------CCccccc------c--CCCCCCHHHHHHHCCCeEE-EE--CCHHHHHHHH
Confidence 11100 000000 0000000 0 0001355678999999988 55 4899999999
Q ss_pred HHhHhCCCCCCEEEEEEeecC
Q 006251 411 QRVKEMPAPGPVLIHVVTEKG 431 (654)
Q Consensus 411 ~~ak~~~~~gP~lI~v~T~KG 431 (654)
+++.+. ++|++|++.+.+-
T Consensus 538 ~~a~~~--~~p~lIeV~i~~~ 556 (595)
T PRK09107 538 QEMIDV--DKPVIFDCRVANL 556 (595)
T ss_pred HHHHhC--CCCEEEEEEecCc
Confidence 999864 7899999999643
No 98
>PRK08322 acetolactate synthase; Reviewed
Probab=99.09 E-value=6.7e-10 Score=126.79 Aligned_cols=129 Identities=13% Similarity=0.218 Sum_probs=94.0
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCch
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~v 330 (654)
+.|.+|+++|+|+|+++|. ++++|||++|||+++ |...+|.+|.++++|+++||.||+...
T Consensus 404 ~~g~mG~~lpaaiGa~la~----p~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~iiV~NN~~~g------------- 464 (547)
T PRK08322 404 ALATMGAGLPSAIAAKLVH----PDRKVLAVCGDGGFM--MNSQELETAVRLGLPLVVLILNDNAYG------------- 464 (547)
T ss_pred CcccccchhHHHHHHHHhC----CCCcEEEEEcchhHh--ccHHHHHHHHHhCCCeEEEEEeCCCcc-------------
Confidence 5688999999999999885 688999999999999 777889999999999999888887321
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHH
Q 006251 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (654)
Q Consensus 331 gals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al 410 (654)
.+.. .++.. | + +.+.-++-.++...++++||+++. .| .+.++|.+++
T Consensus 465 -~~~~-~~~~~----~--------------~----------~~~~~~~~~~df~~lA~a~G~~~~-~v--~~~~eL~~al 511 (547)
T PRK08322 465 -MIRW-KQENM----G--------------F----------EDFGLDFGNPDFVKYAESYGAKGY-RV--ESADDLLPTL 511 (547)
T ss_pred -hHHH-HHHhh----c--------------C----------CcccccCCCCCHHHHHHHCCCeEE-Ee--CCHHHHHHHH
Confidence 1100 00000 0 0 000001112455778999999998 45 4899999999
Q ss_pred HHhHhCCCCCCEEEEEEeecCCC
Q 006251 411 QRVKEMPAPGPVLIHVVTEKGKG 433 (654)
Q Consensus 411 ~~ak~~~~~gP~lI~v~T~KG~G 433 (654)
+++.+. ++|++|+|.+.+...
T Consensus 512 ~~a~~~--~~p~lIev~v~~~~~ 532 (547)
T PRK08322 512 EEALAQ--PGVHVIDCPVDYSEN 532 (547)
T ss_pred HHHHhC--CCCEEEEEEecCccC
Confidence 998764 799999999965443
No 99
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=99.09 E-value=6.5e-10 Score=128.21 Aligned_cols=140 Identities=21% Similarity=0.240 Sum_probs=93.3
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCch
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~v 330 (654)
+.|++|+++++|+|+++|. ++++|||++|||+++ |...+|.+|.++++|+++||.||+..
T Consensus 416 ~~gsmG~glpaaiGa~lA~----pdr~Vv~i~GDG~f~--m~~~EL~Ta~r~~lpvv~iV~NN~~y-------------- 475 (588)
T TIGR01504 416 QAGPLGWTIPAALGVCAAD----PKRNVVALSGDYDFQ--FMIEELAVGAQHNIPYIHVLVNNAYL-------------- 475 (588)
T ss_pred ccccccchHhHHHhhhhhC----CCCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCCch--------------
Confidence 4588999999999999885 688999999999999 77789999999999999999988742
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHH
Q 006251 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (654)
Q Consensus 331 gals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al 410 (654)
+.+.... .......+. +....... .. .-+....+...++|+||..+. .| ++.++|.++|
T Consensus 476 g~i~~~q-~~~~~~~~~-------------~~~~~~~~--~~--~~~~~~~d~~~lA~a~G~~~~-~V--~~~~eL~~al 534 (588)
T TIGR01504 476 GLIRQAQ-RAFDMDYCV-------------QLAFENIN--SS--EVNGYGVDHVKVAEGLGCKAI-RV--FKPEEIAPAF 534 (588)
T ss_pred HHHHHHH-HHhcccccc-------------eeeccccc--cc--cccCCCCCHHHHHHHCCCEEE-EE--CCHHHHHHHH
Confidence 1111100 000000000 00000000 00 000112456778999999987 45 5899999999
Q ss_pred HHhHhC--CCCCCEEEEEEeecC
Q 006251 411 QRVKEM--PAPGPVLIHVVTEKG 431 (654)
Q Consensus 411 ~~ak~~--~~~gP~lI~v~T~KG 431 (654)
+++.+. ..++|++|++.+.+-
T Consensus 535 ~~a~~~~~~~~~p~lIeV~i~~~ 557 (588)
T TIGR01504 535 EQAKALMAEHRVPVVVEVILERV 557 (588)
T ss_pred HHHHhhcccCCCcEEEEEEeccc
Confidence 998741 137999999999543
No 100
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.09 E-value=3.4e-10 Score=130.03 Aligned_cols=127 Identities=17% Similarity=0.277 Sum_probs=92.9
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCch
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~v 330 (654)
+.|++|+++++|+|+++|. ++++|||++|||+++ |...++.+|.++++|+++||.||+...
T Consensus 420 ~~gsmG~~lp~aiGa~lA~----p~~~vv~i~GDG~f~--~~~~el~Ta~~~~lpi~~vV~NN~~~~------------- 480 (570)
T PRK06725 420 GLGTMGFGFPAAIGAQLAK----EEELVICIAGDASFQ--MNIQELQTIAENNIPVKVFIINNKFLG------------- 480 (570)
T ss_pred CcccccchhhHHHhhHhhc----CCCeEEEEEecchhh--ccHHHHHHHHHhCCCeEEEEEECCccH-------------
Confidence 4589999999999999885 688999999999997 677889999999999999999997421
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHh-hhccCCChhhhhhhcCCeEEeecCCCCHHHHHHH
Q 006251 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYA-RGLISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (654)
Q Consensus 331 gals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~-r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~a 409 (654)
.+.. .+... | +. .+. -+.-..+...++++||.+.. .| ++.+++.++
T Consensus 481 -~~~~-~q~~~----~--------------~~----------~~~~~~~~~~d~~~~a~a~G~~~~-~v--~~~~~l~~a 527 (570)
T PRK06725 481 -MVRQ-WQEMF----Y--------------EN----------RLSESKIGSPDFVKVAEAYGVKGL-RA--TNSTEAKQV 527 (570)
T ss_pred -HHHH-HHHHh----c--------------CC----------ccccCcCCCCCHHHHHHHCCCeEE-Ee--CCHHHHHHH
Confidence 1100 00000 0 00 000 00112345678999999988 55 589999999
Q ss_pred HHHhHhCCCCCCEEEEEEeecC
Q 006251 410 FQRVKEMPAPGPVLIHVVTEKG 431 (654)
Q Consensus 410 l~~ak~~~~~gP~lI~v~T~KG 431 (654)
++++.+. ++|++|++.+.+.
T Consensus 528 l~~a~~~--~~p~liev~id~~ 547 (570)
T PRK06725 528 MLEAFAH--EGPVVVDFCVEEG 547 (570)
T ss_pred HHHHHhC--CCCEEEEEEeCCc
Confidence 9999874 7999999999643
No 101
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=99.08 E-value=7.5e-10 Score=126.55 Aligned_cols=128 Identities=22% Similarity=0.366 Sum_probs=93.6
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCch
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~v 330 (654)
+.|++|+++|+|+|+++|. ++++|||++|||+++ |...+|.+|.++++|+++||.||+..
T Consensus 399 ~~g~mG~glpaAiGa~la~----p~~~vv~i~GDG~f~--~~~~eL~ta~~~~l~v~ivV~NN~~~-------------- 458 (548)
T PRK08978 399 GLGTMGFGLPAAIGAQVAR----PDDTVICVSGDGSFM--MNVQELGTIKRKQLPVKIVLLDNQRL-------------- 458 (548)
T ss_pred chhhhhchHHHHHHHHHhC----CCCcEEEEEccchhh--ccHHHHHHHHHhCCCeEEEEEeCCcc--------------
Confidence 4588999999999999885 688999999999999 77788999999999999999999732
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHh-hhc-cCCChhhhhhhcCCeEEeecCCCCHHHHHH
Q 006251 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYA-RGL-ISASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (654)
Q Consensus 331 gals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~-r~~-~~~~~~~lfea~G~~~ig~vDGhDi~~L~~ 408 (654)
+.+.. .+..+ | +. .+. -++ -..+...++++||+++. .| .+.++|.+
T Consensus 459 ~~~~~-~~~~~----~--------------~~----------~~~~~~~~~~~d~~~la~a~G~~~~-~v--~~~~el~~ 506 (548)
T PRK08978 459 GMVRQ-WQQLF----F--------------DE----------RYSETDLSDNPDFVMLASAFGIPGQ-TI--TRKDQVEA 506 (548)
T ss_pred HHHHH-HHHHH----h--------------CC----------cceecCCCCCCCHHHHHHHCCCeEE-EE--CCHHHHHH
Confidence 11100 00000 0 00 000 001 12355778999999998 45 58999999
Q ss_pred HHHHhHhCCCCCCEEEEEEeecCC
Q 006251 409 IFQRVKEMPAPGPVLIHVVTEKGK 432 (654)
Q Consensus 409 al~~ak~~~~~gP~lI~v~T~KG~ 432 (654)
+++++.+. ++|.+|++.+.+..
T Consensus 507 al~~a~~~--~~p~lIeV~id~~~ 528 (548)
T PRK08978 507 ALDTLLNS--EGPYLLHVSIDELE 528 (548)
T ss_pred HHHHHHhC--CCCEEEEEEecCcc
Confidence 99998764 79999999997543
No 102
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=99.08 E-value=6.5e-10 Score=128.40 Aligned_cols=131 Identities=22% Similarity=0.330 Sum_probs=92.0
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchH-HHHHHHHhhc-----CCCEEEEEECCCCCcccccccC
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQA-YEAMNNAGFL-----DANLIVVLNDNKQVSLPTATLD 324 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~-~EAln~A~~~-----~lnLi~Il~dN~~~s~pt~~~~ 324 (654)
+.|++|.++|+|+|+++|. ++++|||++|||+++ |. .++|.+|.++ ++|+++||.||+..
T Consensus 413 ~~g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~--m~~~~EL~Ta~r~~~~~~~lpviivV~NN~~~-------- 478 (597)
T PRK08273 413 TLATMGPAVPYAIAAKFAH----PDRPVIALVGDGAMQ--MNGMAELITVAKYWRQWSDPRLIVLVLNNRDL-------- 478 (597)
T ss_pred ccccccchHHHHHHHHHhC----CCCcEEEEEcchhHh--ccchHHHHHHHHHhhcccCCCEEEEEEeCCcc--------
Confidence 4588999999999999986 688999999999998 67 5789999987 89999999999732
Q ss_pred CCCCchhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHH
Q 006251 325 GPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVE 404 (654)
Q Consensus 325 g~~~~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~ 404 (654)
+.+.... .... +..... ..-+.-..+...++++||+.+. .| .+.+
T Consensus 479 ------~~i~~~q-~~~~------------------~~~~~~-------~~~~~~~~d~~~lA~a~G~~~~-~v--~~~~ 523 (597)
T PRK08273 479 ------NQVTWEQ-RVME------------------GDPKFE-------ASQDLPDVPYARFAELLGLKGI-RV--DDPE 523 (597)
T ss_pred ------hHHHHHH-HHhc------------------CCCccc-------ccccCCCCCHHHHHHHCCCEEE-EE--CCHH
Confidence 1110000 0000 000000 0000011235678999999998 55 4899
Q ss_pred HHHHHHHHhHhCCCCCCEEEEEEeecCC
Q 006251 405 DLVTIFQRVKEMPAPGPVLIHVVTEKGK 432 (654)
Q Consensus 405 ~L~~al~~ak~~~~~gP~lI~v~T~KG~ 432 (654)
+|..+|+++.+. ++|++|+|.+.+..
T Consensus 524 eL~~al~~a~~~--~~p~lIeV~~~~~~ 549 (597)
T PRK08273 524 QLGAAWDEALAA--DRPVVLEVKTDPNV 549 (597)
T ss_pred HHHHHHHHHHhC--CCCEEEEEEeCCCC
Confidence 999999999874 79999999996543
No 103
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.07 E-value=6.6e-10 Score=128.83 Aligned_cols=128 Identities=19% Similarity=0.286 Sum_probs=94.0
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCch
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~v 330 (654)
+.|.+|.++|+|+|+++|. ++++|||++|||+++ |...+|.+|.++++|+++||.||+..
T Consensus 432 ~~g~mG~glpaAiGA~lA~----p~r~Vv~i~GDG~f~--m~~~eL~Ta~r~~lpvi~vV~NN~~~-------------- 491 (616)
T PRK07418 432 GLGTMGFGMPAAMGVKVAL----PDEEVICIAGDASFL--MNIQELGTLAQYGINVKTVIINNGWQ-------------- 491 (616)
T ss_pred CccccccHHHHHHHHHHhC----CCCcEEEEEcchHhh--hhHHHHHHHHHhCCCeEEEEEECCcc--------------
Confidence 4588999999999999885 688999999999999 78888999999999999999999742
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHh-hhc--cCCChhhhhhhcCCeEEeecCCCCHHHHH
Q 006251 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYA-RGL--ISASGSTFFEELGLYYIGPVDGHNVEDLV 407 (654)
Q Consensus 331 gals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~-r~~--~~~~~~~lfea~G~~~ig~vDGhDi~~L~ 407 (654)
+.+.. .++.+... .+. .++ -..+...++++||.+++ .| ++.++|.
T Consensus 492 g~i~~-~q~~~~~~----------------------------~~~~~~~~~~~~d~~~~A~a~G~~g~-~V--~~~~el~ 539 (616)
T PRK07418 492 GMVRQ-WQESFYGE----------------------------RYSASNMEPGMPDFVKLAEAFGVKGM-VI--SERDQLK 539 (616)
T ss_pred hHHHH-HHHHhcCC----------------------------CceeecCCCCCCCHHHHHHHCCCeEE-Ee--CCHHHHH
Confidence 11100 00000000 000 001 01345678999999998 55 4899999
Q ss_pred HHHHHhHhCCCCCCEEEEEEeecCC
Q 006251 408 TIFQRVKEMPAPGPVLIHVVTEKGK 432 (654)
Q Consensus 408 ~al~~ak~~~~~gP~lI~v~T~KG~ 432 (654)
++|+++.+. ++|++|++.+.+..
T Consensus 540 ~al~~a~~~--~~p~lIeV~i~~~~ 562 (616)
T PRK07418 540 DAIAEALAH--DGPVLIDVHVRRDE 562 (616)
T ss_pred HHHHHHHhC--CCCEEEEEEecCcc
Confidence 999998864 78999999997533
No 104
>PLN02470 acetolactate synthase
Probab=99.06 E-value=1e-09 Score=126.55 Aligned_cols=137 Identities=20% Similarity=0.279 Sum_probs=93.5
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCch
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~v 330 (654)
+.|++|.++|+|+|+++|. ++++|||++|||+++ |...+|.+|.++++|+++||.||+..
T Consensus 424 ~~g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~--m~~~eL~Ta~~~~l~v~ivV~NN~~y-------------- 483 (585)
T PLN02470 424 GLGAMGFGLPAAIGAAAAN----PDAIVVDIDGDGSFI--MNIQELATIHVENLPVKIMVLNNQHL-------------- 483 (585)
T ss_pred ccccccchHHHHHHHHHhC----CCCcEEEEEccchhh--ccHHHHHHHHHhCCCeEEEEEeCCcc--------------
Confidence 4588999999999999986 688999999999999 77899999999999999988888631
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHH
Q 006251 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (654)
Q Consensus 331 gals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al 410 (654)
+.+.... +.+....+.. ...+.+. ......++...++++||+++. .| ++.++|.++|
T Consensus 484 g~i~~~~-~~~~~~~~~~---------~~~~~~~----------~~~~~~~d~~~iA~a~G~~~~-~v--~~~~el~~al 540 (585)
T PLN02470 484 GMVVQWE-DRFYKANRAH---------TYLGDPD----------AEAEIFPDFLKFAEGCKIPAA-RV--TRKSDLREAI 540 (585)
T ss_pred hHHHHHH-HHHhCCceee---------eecCccc----------cccCCCCCHHHHHHHCCCeEE-EE--CCHHHHHHHH
Confidence 1110000 0000000000 0000000 000011355678999999987 45 5899999999
Q ss_pred HHhHhCCCCCCEEEEEEeecCC
Q 006251 411 QRVKEMPAPGPVLIHVVTEKGK 432 (654)
Q Consensus 411 ~~ak~~~~~gP~lI~v~T~KG~ 432 (654)
+++.+. ++|.+|+|.+.+..
T Consensus 541 ~~a~~~--~~p~lieV~i~~~~ 560 (585)
T PLN02470 541 QKMLDT--PGPYLLDVIVPHQE 560 (585)
T ss_pred HHHHhC--CCCEEEEEEeCCcc
Confidence 999874 78999999996543
No 105
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.06 E-value=4.4e-10 Score=129.09 Aligned_cols=131 Identities=20% Similarity=0.320 Sum_probs=93.0
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCch
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~v 330 (654)
+.|.+|+++|+|+|+++|. ++++|||++|||+++ |..++|.+|.++++|+++||.||+..
T Consensus 419 ~~g~mG~~lp~aiGa~la~----p~~~vv~i~GDG~f~--~~~~eL~ta~~~~lpv~~vV~NN~~~-------------- 478 (574)
T PRK06882 419 GAGTMGFGLPAAIGVKFAH----PEATVVCVTGDGSIQ--MNIQELSTAKQYDIPVVIVSLNNRFL-------------- 478 (574)
T ss_pred CcccccchhHHHHHHHhhc----CCCcEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEECchh--------------
Confidence 5688999999999999985 578999999999998 67799999999999999999999742
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHH
Q 006251 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (654)
Q Consensus 331 gals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al 410 (654)
+.+.. .+..+.. +.... .+. .-.++...++++||+.++ .| ++.++|..+|
T Consensus 479 ~~i~~-~q~~~~~-----------------~~~~~-------~~~--~~~~d~~~la~a~G~~~~-~v--~~~~eL~~al 528 (574)
T PRK06882 479 GMVKQ-WQDLIYS-----------------GRHSQ-------VYM--NSLPDFAKLAEAYGHVGI-QI--DTPDELEEKL 528 (574)
T ss_pred HHHHH-HHHHhcC-----------------Ccccc-------cCC--CCCCCHHHHHHHCCCeEE-Ee--CCHHHHHHHH
Confidence 11100 0000000 00000 000 001244667999999988 55 4899999999
Q ss_pred HHhHhCCCCCCEEEEEEeecCC
Q 006251 411 QRVKEMPAPGPVLIHVVTEKGK 432 (654)
Q Consensus 411 ~~ak~~~~~gP~lI~v~T~KG~ 432 (654)
+++.+. .++|++|+|.+.+..
T Consensus 529 ~~a~~~-~~~p~liev~i~~~~ 549 (574)
T PRK06882 529 TQAFSI-KDKLVFVDVNVDETE 549 (574)
T ss_pred HHHHhc-CCCcEEEEEEecCcc
Confidence 998763 268999999997543
No 106
>PRK07586 hypothetical protein; Validated
Probab=99.06 E-value=9e-10 Score=124.88 Aligned_cols=128 Identities=20% Similarity=0.261 Sum_probs=89.3
Q ss_pred ccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCchhh
Q 006251 253 GHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGA 332 (654)
Q Consensus 253 G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~vga 332 (654)
|++|+++|+|+|+++|. ++++|||++|||+++ |..++|.+|.++++|+++||.||+.. +.
T Consensus 385 g~mG~~lpaaiGa~lA~----p~r~Vv~i~GDGsf~--m~~~EL~Ta~~~~lpv~ivV~NN~~y--------------~~ 444 (514)
T PRK07586 385 GAIGQGLPLATGAAVAC----PDRKVLALQGDGSAM--YTIQALWTQARENLDVTTVIFANRAY--------------AI 444 (514)
T ss_pred cccccHHHHHHHHHHhC----CCCeEEEEEechHHH--hHHHHHHHHHHcCCCCEEEEEeCchh--------------HH
Confidence 88999999999999986 688999999999999 78899999999999988888888631 11
Q ss_pred hhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhc--cCCChhhhhhhcCCeEEeecCCCCHHHHHHHH
Q 006251 333 LSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGL--ISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (654)
Q Consensus 333 ls~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~--~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al 410 (654)
+.... ... .+ ...+... ..+. +. -..+...++++||+++. .| ++.++|.+++
T Consensus 445 ~~~~~-~~~---~~-----------~~~~~~~-------~~~~-~~~~~~~d~~~lA~a~G~~~~-~V--~~~~el~~al 498 (514)
T PRK07586 445 LRGEL-ARV---GA-----------GNPGPRA-------LDML-DLDDPDLDWVALAEGMGVPAR-RV--TTAEEFADAL 498 (514)
T ss_pred HHHHH-HHh---cC-----------CCCCccc-------cccc-cCCCCCCCHHHHHHHCCCcEE-Ee--CCHHHHHHHH
Confidence 10000 000 00 0000000 0000 01 12355778999999988 55 4799999999
Q ss_pred HHhHhCCCCCCEEEEEEe
Q 006251 411 QRVKEMPAPGPVLIHVVT 428 (654)
Q Consensus 411 ~~ak~~~~~gP~lI~v~T 428 (654)
+++.+. ++|++|++.+
T Consensus 499 ~~a~~~--~~p~liev~~ 514 (514)
T PRK07586 499 AAALAE--PGPHLIEAVV 514 (514)
T ss_pred HHHHcC--CCCEEEEEEC
Confidence 999864 7999999863
No 107
>PRK08617 acetolactate synthase; Reviewed
Probab=99.06 E-value=6.5e-10 Score=127.16 Aligned_cols=128 Identities=16% Similarity=0.261 Sum_probs=92.6
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCch
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~v 330 (654)
+.|.+|.++++|+|+++|. ++++|||++|||+++ |...+|.+|..+++|+++||.||+...
T Consensus 412 ~~g~mG~~lpaaiGa~la~----p~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~~vV~NN~~~~------------- 472 (552)
T PRK08617 412 GMQTLGVALPWAIAAALVR----PGKKVVSVSGDGGFL--FSAMELETAVRLKLNIVHIIWNDGHYN------------- 472 (552)
T ss_pred ccccccccccHHHhhHhhc----CCCcEEEEEechHHh--hhHHHHHHHHHhCCCeEEEEEECCccc-------------
Confidence 4578999999999999885 688999999999999 788899999999999998888886311
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHH
Q 006251 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (654)
Q Consensus 331 gals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al 410 (654)
.+.. . + ...|. . ...-+.-..+...++++||.++. .| ++.++|.++|
T Consensus 473 -~~~~-~---~-~~~~~--------------~----------~~~~~~~~~d~~~lA~a~G~~~~-~v--~~~~eL~~al 519 (552)
T PRK08617 473 -MVEF-Q---E-EMKYG--------------R----------SSGVDFGPVDFVKYAESFGAKGL-RV--TSPDELEPVL 519 (552)
T ss_pred -hHHH-H---H-HhhcC--------------C----------cccCCCCCCCHHHHHHHCCCeEE-EE--CCHHHHHHHH
Confidence 1100 0 0 00000 0 00001112345678999999988 44 5899999999
Q ss_pred HHhHhCCCCCCEEEEEEeecCC
Q 006251 411 QRVKEMPAPGPVLIHVVTEKGK 432 (654)
Q Consensus 411 ~~ak~~~~~gP~lI~v~T~KG~ 432 (654)
+++.+. ++|++|++.+.+..
T Consensus 520 ~~a~~~--~~p~liev~~~~~~ 539 (552)
T PRK08617 520 REALAT--DGPVVIDIPVDYSD 539 (552)
T ss_pred HHHHhC--CCcEEEEEEecccc
Confidence 998764 78999999997544
No 108
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=99.06 E-value=1.2e-09 Score=125.54 Aligned_cols=127 Identities=23% Similarity=0.294 Sum_probs=93.3
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCch
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~v 330 (654)
+.|++|.++|+|+|+++|. ++++|||++|||+++ |...+|.+|.++++|+++||.||+..
T Consensus 419 ~~g~mG~glpaAiGa~la~----p~~~vv~i~GDG~f~--m~~~eL~Ta~~~~l~i~ivV~NN~~y-------------- 478 (572)
T PRK06456 419 GMGTMGFGLPAAMGAKLAR----PDKVVVDLDGDGSFL--MTGTNLATAVDEHIPVISVIFDNRTL-------------- 478 (572)
T ss_pred CcccccchhHHHHHHHHhC----CCCeEEEEEccchHh--cchHHHHHHHHhCCCeEEEEEECCch--------------
Confidence 4589999999999999986 578999999999999 77789999999999999999999732
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHh-hhc-cCCChhhhhhhcCCeEEeecCCCCHHHHHH
Q 006251 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYA-RGL-ISASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (654)
Q Consensus 331 gals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~-r~~-~~~~~~~lfea~G~~~ig~vDGhDi~~L~~ 408 (654)
+.+.... .. .| +. .+. -++ -..+...++++||.++. .| ++.++|.+
T Consensus 479 g~i~~~q-~~----~~--------------~~----------~~~~~~~~~~~d~~~~A~a~G~~~~-~v--~~~~eL~~ 526 (572)
T PRK06456 479 GLVRQVQ-DL----FF--------------GK----------RIVGVDYGPSPDFVKLAEAFGALGF-NV--TTYEDIEK 526 (572)
T ss_pred HHHHHHH-HH----hh--------------CC----------CcccccCCCCCCHHHHHHHCCCeeE-Ee--CCHHHHHH
Confidence 1111000 00 00 00 000 011 12355778999999987 44 58999999
Q ss_pred HHHHhHhCCCCCCEEEEEEeecC
Q 006251 409 IFQRVKEMPAPGPVLIHVVTEKG 431 (654)
Q Consensus 409 al~~ak~~~~~gP~lI~v~T~KG 431 (654)
+|+++.+. ++|++|+|.+.+.
T Consensus 527 al~~a~~~--~~p~lIev~v~~~ 547 (572)
T PRK06456 527 SLKSAIKE--DIPAVIRVPVDKE 547 (572)
T ss_pred HHHHHHhC--CCCEEEEEEeCcc
Confidence 99999864 7999999999753
No 109
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=99.06 E-value=5.8e-10 Score=128.56 Aligned_cols=129 Identities=18% Similarity=0.279 Sum_probs=92.8
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCch
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~v 330 (654)
+.|++|.++++|+|+++|. ++++|||++|||+++ |...+|.+|.++++|+++||.||+..
T Consensus 428 ~~g~mG~glpaaiGaala~----p~~~vv~i~GDG~f~--m~~~eL~Ta~~~~l~~~~vV~NN~~y-------------- 487 (585)
T CHL00099 428 GLGTMGYGLPAAIGAQIAH----PNELVICISGDASFQ--MNLQELGTIAQYNLPIKIIIINNKWQ-------------- 487 (585)
T ss_pred cccchhhhHHHHHHHHHhC----CCCeEEEEEcchhhh--hhHHHHHHHHHhCCCeEEEEEECCcc--------------
Confidence 5689999999999999986 588999999999999 78889999999999999999999732
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHH
Q 006251 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (654)
Q Consensus 331 gals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al 410 (654)
+.+.... ..+....+. . . ..+.-.++...++++||..+. .| ++.++|.+++
T Consensus 488 ~~i~~~q-~~~~~~~~~-----------------~-~-------~~~~~~~d~~~la~a~G~~~~-~v--~~~~el~~al 538 (585)
T CHL00099 488 GMVRQWQ-QAFYGERYS-----------------H-S-------NMEEGAPDFVKLAEAYGIKGL-RI--KSRKDLKSSL 538 (585)
T ss_pred hHHHHHH-HHhcCCCcc-----------------c-c-------cCCCCCCCHHHHHHHCCCeEE-Ee--CCHHHHHHHH
Confidence 1111000 000000000 0 0 000001345667999999988 55 4799999999
Q ss_pred HHhHhCCCCCCEEEEEEeec
Q 006251 411 QRVKEMPAPGPVLIHVVTEK 430 (654)
Q Consensus 411 ~~ak~~~~~gP~lI~v~T~K 430 (654)
+++.+. ++|.+|++.+..
T Consensus 539 ~~a~~~--~~p~liev~v~~ 556 (585)
T CHL00099 539 KEALDY--DGPVLIDCQVIE 556 (585)
T ss_pred HHHHhC--CCCEEEEEEECC
Confidence 998864 799999999964
No 110
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.06 E-value=1.5e-09 Score=124.87 Aligned_cols=129 Identities=18% Similarity=0.321 Sum_probs=92.4
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCch
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~v 330 (654)
+.|++|+++++|+|+++|. ++++|||++|||+++ |...+|.+|.++++|+++||.||+..
T Consensus 419 ~~g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~--m~~~EL~Ta~r~~lpv~~vV~NN~~y-------------- 478 (572)
T PRK08979 419 GLGTMGFGLPAAMGVKFAM----PDETVVCVTGDGSIQ--MNIQELSTALQYDIPVKIINLNNRFL-------------- 478 (572)
T ss_pred CcccccchhhHHHhhhhhC----CCCeEEEEEcchHhh--ccHHHHHHHHHcCCCeEEEEEeCCcc--------------
Confidence 4588999999999999985 688999999999999 77889999999999999999998732
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHH
Q 006251 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (654)
Q Consensus 331 gals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al 410 (654)
+.+.... ..+ |. +.... .+. ...++..+++++||.... .| .+.++|..+|
T Consensus 479 ~~i~~~q-~~~----~~-------------~~~~~-------~~~--~~~~d~~~~A~a~G~~~~-~v--~~~~eL~~al 528 (572)
T PRK08979 479 GMVKQWQ-DMI----YQ-------------GRHSH-------SYM--DSVPDFAKIAEAYGHVGI-RI--SDPDELESGL 528 (572)
T ss_pred HHHHHHH-HHH----hC-------------Ccccc-------cCC--CCCCCHHHHHHHCCCeEE-EE--CCHHHHHHHH
Confidence 1111000 000 00 00000 000 012355778999999987 45 4899999999
Q ss_pred HHhHhCCCCCCEEEEEEeec
Q 006251 411 QRVKEMPAPGPVLIHVVTEK 430 (654)
Q Consensus 411 ~~ak~~~~~gP~lI~v~T~K 430 (654)
+++.+. .++|++|++.+.+
T Consensus 529 ~~a~~~-~~~p~lIev~i~~ 547 (572)
T PRK08979 529 EKALAM-KDRLVFVDINVDE 547 (572)
T ss_pred HHHHhc-CCCcEEEEEEeCC
Confidence 998753 2789999999864
No 111
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=99.05 E-value=8.5e-10 Score=126.91 Aligned_cols=129 Identities=16% Similarity=0.206 Sum_probs=91.6
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCch
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~v 330 (654)
+.|++|+++++|+|+++|. ++++||+++|||+++ |...+|.+|..+++|+++||.||+..
T Consensus 406 ~~gsmG~glpaAiGa~la~----p~r~Vv~i~GDGsf~--m~~~eL~Tavr~~lpi~~VV~NN~~y-------------- 465 (575)
T TIGR02720 406 LFATMGVGVPGAIAAKLNY----PDRQVFNLAGDGAFS--MTMQDLLTQVQYHLPVINIVFSNCTY-------------- 465 (575)
T ss_pred CcchhhchHHHHHHHHHhC----CCCcEEEEEcccHHH--hhHHHHHHHHHhCCCeEEEEEeCCcc--------------
Confidence 4588999999999988875 688999999999999 77888999999999999888887632
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHH
Q 006251 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (654)
Q Consensus 331 gals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al 410 (654)
+.+.... .... + .. +.-++-..+...++++||.++. .| .+.++|.+++
T Consensus 466 g~i~~~~-~~~~------------------~-~~---------~~~~~~~~df~~iA~a~G~~~~-~v--~~~~el~~al 513 (575)
T TIGR02720 466 GFIKDEQ-EDTN------------------Q-PL---------IGVDFNDADFAKIAEGVGAVGF-RV--NKIEQLPAVF 513 (575)
T ss_pred HHHHHHH-HHhC------------------C-Cc---------ccccCCCCCHHHHHHHCCCEEE-Ee--CCHHHHHHHH
Confidence 1110000 0000 0 00 0001112355778999999987 55 4789999999
Q ss_pred HHhHhCCCCCCEEEEEEeecC
Q 006251 411 QRVKEMPAPGPVLIHVVTEKG 431 (654)
Q Consensus 411 ~~ak~~~~~gP~lI~v~T~KG 431 (654)
+++.+...++|++|++.+.+-
T Consensus 514 ~~a~~~~~~~p~liev~i~~~ 534 (575)
T TIGR02720 514 EQAKAIKQGKPVLIDAKITGD 534 (575)
T ss_pred HHHHhhCCCCcEEEEEEeCCC
Confidence 998721137999999999653
No 112
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.05 E-value=1.2e-09 Score=125.27 Aligned_cols=127 Identities=20% Similarity=0.303 Sum_probs=92.9
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCch
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~v 330 (654)
+.|++|.++|+|+|+++|. ++++|||++|||+++ |...+|.+|.++++|+++||.||+..
T Consensus 412 ~~g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~--m~~~eL~Ta~~~~l~i~~vV~NN~~y-------------- 471 (561)
T PRK06048 412 GLGTMGYGFPAAIGAKVGK----PDKTVIDIAGDGSFQ--MNSQELATAVQNDIPVIVAILNNGYL-------------- 471 (561)
T ss_pred CccccccHHHHHHHHHHhC----CCCcEEEEEeCchhh--ccHHHHHHHHHcCCCeEEEEEECCcc--------------
Confidence 4588999999999999985 588999999999999 77889999999999999988888732
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHh-hhc-cCCChhhhhhhcCCeEEeecCCCCHHHHHH
Q 006251 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYA-RGL-ISASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (654)
Q Consensus 331 gals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~-r~~-~~~~~~~lfea~G~~~ig~vDGhDi~~L~~ 408 (654)
+.+.. .+..+... .+. -+. -..+...++++||+++. .| ++.++|.+
T Consensus 472 ~~i~~-~~~~~~~~----------------------------~~~~~~~~~~~d~~~lA~a~G~~~~-~v--~t~~el~~ 519 (561)
T PRK06048 472 GMVRQ-WQELFYDK----------------------------RYSHTCIKGSVDFVKLAEAYGALGL-RV--EKPSEVRP 519 (561)
T ss_pred HHHHH-HHHHHcCC----------------------------cccccCCCCCCCHHHHHHHCCCeEE-EE--CCHHHHHH
Confidence 11100 00000000 000 011 12355778999999987 44 48999999
Q ss_pred HHHHhHhCCCCCCEEEEEEeecC
Q 006251 409 IFQRVKEMPAPGPVLIHVVTEKG 431 (654)
Q Consensus 409 al~~ak~~~~~gP~lI~v~T~KG 431 (654)
+|+++.+. ++|++|++.+.+.
T Consensus 520 al~~a~~~--~~p~liev~~~~~ 540 (561)
T PRK06048 520 AIEEAVAS--DRPVVIDFIVECE 540 (561)
T ss_pred HHHHHHhC--CCCEEEEEEecCc
Confidence 99999764 7999999999643
No 113
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=99.05 E-value=1.1e-09 Score=126.10 Aligned_cols=131 Identities=19% Similarity=0.239 Sum_probs=94.5
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCch
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~v 330 (654)
+.|++|.++|+|+|+++|. ++++|||++|||+++ |...+|.+|.++++|+++||.||+..
T Consensus 428 ~~g~mG~~lpaaiGa~la~----p~~~Vv~i~GDG~f~--m~~~eL~Tavr~~lpvi~vV~NN~~y-------------- 487 (579)
T TIGR03457 428 SFGNCGYAFPTIIGAKIAA----PDRPVVAYAGDGAWG--MSMNEIMTAVRHDIPVTAVVFRNRQW-------------- 487 (579)
T ss_pred ccccccchHHHHHhhhhhC----CCCcEEEEEcchHHh--ccHHHHHHHHHhCCCeEEEEEECcch--------------
Confidence 4588999999999999985 688999999999999 77789999999999999988888742
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhh-hccC-CChhhhhhhcCCeEEeecCCCCHHHHHH
Q 006251 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYAR-GLIS-ASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (654)
Q Consensus 331 gals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r-~~~~-~~~~~lfea~G~~~ig~vDGhDi~~L~~ 408 (654)
+.+.... . ..| + +.+.. +.-. .+..+++++||.++. .| ++.++|..
T Consensus 488 g~i~~~~-~----~~~--------------~----------~~~~~~~~~~~~d~~~lA~a~G~~g~-~v--~~~~el~~ 535 (579)
T TIGR03457 488 GAEKKNQ-V----DFY--------------N----------NRFVGTELESELSFAGIADAMGAKGV-VV--DKPEDVGP 535 (579)
T ss_pred HHHHHHH-H----Hhh--------------C----------CcceeccCCCCCCHHHHHHHCCCeEE-EE--CCHHHHHH
Confidence 1110000 0 000 0 00000 1111 255778999999987 45 58999999
Q ss_pred HHHHhHhC-CCCCCEEEEEEeecCCC
Q 006251 409 IFQRVKEM-PAPGPVLIHVVTEKGKG 433 (654)
Q Consensus 409 al~~ak~~-~~~gP~lI~v~T~KG~G 433 (654)
+|+++.+. ..++|++|++.+.+-.+
T Consensus 536 al~~a~~~~~~~~p~lieV~v~~~~~ 561 (579)
T TIGR03457 536 ALKKAIAAQAEGKTTVIEIVCTRELG 561 (579)
T ss_pred HHHHHHhhCCCCCcEEEEEEeCCCcC
Confidence 99998652 13689999999976664
No 114
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.05 E-value=1.4e-09 Score=124.87 Aligned_cols=129 Identities=18% Similarity=0.223 Sum_probs=92.3
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCch
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~v 330 (654)
+.|++|+++++|+|+++|. ++++|||++|||+++ |...+|.+|..+++|+++||.||+...
T Consensus 412 ~~g~mG~~l~~aiGa~la~----p~~~vv~i~GDG~f~--m~~~eL~Ta~~~~lpvi~vV~NN~~~~------------- 472 (563)
T PRK08527 412 GLGTMGYGLPAALGAKLAV----PDKVVINFTGDGSIL--MNIQELMTAVEYKIPVINIILNNNFLG------------- 472 (563)
T ss_pred CcccccchHHHHHHHHHhC----CCCcEEEEecCchhc--ccHHHHHHHHHhCCCeEEEEEECCcch-------------
Confidence 4589999999999999986 578899999999999 666779999999999999888887321
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhc-cCCChhhhhhhcCCeEEeecCCCCHHHHHHH
Q 006251 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGL-ISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (654)
Q Consensus 331 gals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~-~~~~~~~lfea~G~~~ig~vDGhDi~~L~~a 409 (654)
.+.. .+.......+. .-+. ...+...++++||..+. .| ++.++|.++
T Consensus 473 -~i~~-~~~~~~~~~~~---------------------------~~~~~~~~d~~~~a~a~G~~~~-~v--~~~~el~~a 520 (563)
T PRK08527 473 -MVRQ-WQTFFYEERYS---------------------------ETDLSTQPDFVKLAESFGGIGF-RV--TTKEEFDKA 520 (563)
T ss_pred -hHHH-HHHhhcCCcee---------------------------eccCCCCCCHHHHHHHCCCeEE-EE--CCHHHHHHH
Confidence 1100 00000000000 0000 11345668999999987 45 489999999
Q ss_pred HHHhHhCCCCCCEEEEEEeecCC
Q 006251 410 FQRVKEMPAPGPVLIHVVTEKGK 432 (654)
Q Consensus 410 l~~ak~~~~~gP~lI~v~T~KG~ 432 (654)
|+++.+. ++|.+|++.+.+..
T Consensus 521 l~~a~~~--~~p~lieV~v~~~~ 541 (563)
T PRK08527 521 LKEALES--DKVALIDVKIDRFE 541 (563)
T ss_pred HHHHHhC--CCCEEEEEEECCcc
Confidence 9998764 78999999997644
No 115
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.04 E-value=9.9e-10 Score=115.23 Aligned_cols=133 Identities=17% Similarity=0.210 Sum_probs=92.2
Q ss_pred cccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCC-CcccchHHHHHHHHhhcCCCEEEEEECCCC-CcccccccCCCCCc
Q 006251 252 AGHSSTSISAGLGMAVARDILGKNNNVISVIGDG-AMTAGQAYEAMNNAGFLDANLIVVLNDNKQ-VSLPTATLDGPATP 329 (654)
Q Consensus 252 ~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDG-al~eG~~~EAln~A~~~~lnLi~Il~dN~~-~s~pt~~~~g~~~~ 329 (654)
.|.+|.++|+|+|+++|. ++.+||+++||| ++. +....|.+|.+++.|+++||.||+. ..+. .+.. +..+
T Consensus 58 ~~~~G~alp~A~GaklA~----Pd~~VV~i~GDG~~f~--ig~~eL~tA~rrn~~i~vIV~nN~~ygmtg-gQ~s-~~t~ 129 (279)
T PRK11866 58 HGIHGRVLPIATGVKWAN----PKLTVIGYGGDGDGYG--IGLGHLPHAARRNVDITYIVSNNQVYGLTT-GQAS-PTTP 129 (279)
T ss_pred ccccccHHHHHHHHHHHC----CCCcEEEEECChHHHH--ccHHHHHHHHHHCcCcEEEEEEChhhhhhc-cccc-CCCC
Confidence 355688999999999985 689999999999 687 5567899999999999999999973 3222 1111 1111
Q ss_pred hhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHH
Q 006251 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (654)
Q Consensus 330 vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~a 409 (654)
.+.... +...|... -..+...+++++|..++......+.+++.++
T Consensus 130 ~g~~t~---------------------~t~~g~~~--------------~~~d~~~iA~a~G~~~Va~~~~~~~~~l~~~ 174 (279)
T PRK11866 130 RGVKTK---------------------TTPDGNIE--------------EPFNPIALALAAGATFVARGFSGDVKHLKEI 174 (279)
T ss_pred CCceee---------------------ccCCCCCC--------------CCCCHHHHHHHCCCCEEEEEcCCCHHHHHHH
Confidence 111000 00000000 0013355789999988877666899999999
Q ss_pred HHHhHhCCCCCCEEEEEEee
Q 006251 410 FQRVKEMPAPGPVLIHVVTE 429 (654)
Q Consensus 410 l~~ak~~~~~gP~lI~v~T~ 429 (654)
++++.+. +||.+|++.+.
T Consensus 175 l~~Al~~--~Gps~I~v~~p 192 (279)
T PRK11866 175 IKEAIKH--KGFSFIDVLSP 192 (279)
T ss_pred HHHHHhC--CCCEEEEEeCC
Confidence 9999875 79999999875
No 116
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.04 E-value=5.4e-10 Score=117.19 Aligned_cols=133 Identities=16% Similarity=0.162 Sum_probs=90.9
Q ss_pred ccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCC-CcccccccCCCCCchh
Q 006251 253 GHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQ-VSLPTATLDGPATPVG 331 (654)
Q Consensus 253 G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~-~s~pt~~~~g~~~~vg 331 (654)
+.+|.++++|+|+++|. +++.|||++|||++.. +..+.|.+|.++++|+++||.||+. ..+. .+.. ++.+.+
T Consensus 60 ~~mG~alp~AiGaklA~----pd~~VVai~GDG~~~~-iG~~eL~tA~r~nl~i~~IV~NN~~Yg~t~-~Q~s-~~t~~g 132 (280)
T PRK11869 60 TLHGRAIPAATAVKATN----PELTVIAEGGDGDMYA-EGGNHLIHAIRRNPDITVLVHNNQVYGLTK-GQAS-PTTLKG 132 (280)
T ss_pred cccccHHHHHHHHHHHC----CCCcEEEEECchHHhh-CcHHHHHHHHHhCcCcEEEEEECHHHhhhc-ceec-CCCCCC
Confidence 44778899999998874 6899999999999761 2267899999999999999999973 3222 1111 111111
Q ss_pred hhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHHH
Q 006251 332 ALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQ 411 (654)
Q Consensus 332 als~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al~ 411 (654)
.... +...|. ..-..+...+++++|..++...+-.+++++.++++
T Consensus 133 ~~~~---------------------~~p~g~--------------~~~~~D~~~lA~a~G~~~va~~~~~~~~~l~~~i~ 177 (280)
T PRK11869 133 FKTP---------------------TQPWGV--------------FEEPFNPIALAIALDASFVARTFSGDIEETKEILK 177 (280)
T ss_pred cccc---------------------cCCCCc--------------cCCCCCHHHHHHHCCCCEEEEeCCCCHHHHHHHHH
Confidence 0000 000000 00012445679999999987655569999999999
Q ss_pred HhHhCCCCCCEEEEEEee
Q 006251 412 RVKEMPAPGPVLIHVVTE 429 (654)
Q Consensus 412 ~ak~~~~~gP~lI~v~T~ 429 (654)
++.+. ++|.+|++.+.
T Consensus 178 ~Al~~--~Gp~lIeV~~p 193 (280)
T PRK11869 178 EAIKH--KGLAIVDIFQP 193 (280)
T ss_pred HHHhC--CCCEEEEEECC
Confidence 99875 79999999885
No 117
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.04 E-value=5.8e-10 Score=128.21 Aligned_cols=129 Identities=18% Similarity=0.275 Sum_probs=93.1
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCch
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~v 330 (654)
+.|++|+++|+|+|+++|. ++++|||++|||+++ |...+|.+|.++++|+++||.||+..
T Consensus 419 ~~g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~--m~~~eL~Ta~r~~l~v~ivV~NN~~y-------------- 478 (574)
T PRK07979 419 GLGTMGFGLPAALGVKMAL----PEETVVCVTGDGSIQ--MNIQELSTALQYELPVLVLNLNNRYL-------------- 478 (574)
T ss_pred CccchhhHHHHHHHHHHhC----CCCeEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEeCchh--------------
Confidence 4588999999999999985 688999999999999 78899999999999999999999732
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhc-cCCChhhhhhhcCCeEEeecCCCCHHHHHHH
Q 006251 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGL-ISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (654)
Q Consensus 331 gals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~-~~~~~~~lfea~G~~~ig~vDGhDi~~L~~a 409 (654)
+.+.... ... |. +.. . .... -.++...++++||.... .| .+.++|.++
T Consensus 479 g~i~~~q-~~~----~~-------------~~~-~---------~~~~~~~~d~~~iA~a~G~~g~-~v--~~~~eL~~a 527 (574)
T PRK07979 479 GMVKQWQ-DMI----YS-------------GRH-S---------QSYMQSLPDFVRLAEAYGHVGI-QI--SHPDELESK 527 (574)
T ss_pred hHHHHHH-HHh----cC-------------Ccc-c---------cccCCCCCCHHHHHHHCCCEEE-EE--CCHHHHHHH
Confidence 1111100 000 00 000 0 0000 12356778999999987 44 589999999
Q ss_pred HHHhHhC-CCCCCEEEEEEeec
Q 006251 410 FQRVKEM-PAPGPVLIHVVTEK 430 (654)
Q Consensus 410 l~~ak~~-~~~gP~lI~v~T~K 430 (654)
++++.+. ..++|.+|++.+.+
T Consensus 528 l~~a~~~~~~~~p~lIeV~i~~ 549 (574)
T PRK07979 528 LSEALEQVRNNRLVFVDVTVDG 549 (574)
T ss_pred HHHHHhccCCCCcEEEEEEECC
Confidence 9998752 12689999999964
No 118
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=99.04 E-value=6.2e-10 Score=127.88 Aligned_cols=128 Identities=18% Similarity=0.310 Sum_probs=92.4
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCch
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~v 330 (654)
+.|++|.++|+|+|+++|. ++++|||++|||+++ |...+|.+|.++++|+++||.||+..
T Consensus 422 ~~g~mG~glpaAiGaala~----p~~~vv~i~GDGsf~--m~~~eL~ta~r~~lpi~ivV~NN~~~-------------- 481 (571)
T PRK07710 422 GLGTMGFGLPAAIGAQLAK----PDETVVAIVGDGGFQ--MTLQELSVIKELSLPVKVVILNNEAL-------------- 481 (571)
T ss_pred CcccccchHHHHHHHHHhC----CCCcEEEEEcchHHh--hhHHHHHHHHHhCCCeEEEEEECchH--------------
Confidence 4588999999999999985 688999999999999 67778999999999999988888731
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHh-hhc-cCCChhhhhhhcCCeEEeecCCCCHHHHHH
Q 006251 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYA-RGL-ISASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (654)
Q Consensus 331 gals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~-r~~-~~~~~~~lfea~G~~~ig~vDGhDi~~L~~ 408 (654)
+.+.... .. .| +. .+. .+. -..+...++++||+.+. .+ ++.++|.+
T Consensus 482 ~~i~~~~-~~----~~--------------~~----------~~~~~~~~~~~d~~~~A~a~G~~~~-~v--~~~~el~~ 529 (571)
T PRK07710 482 GMVRQWQ-EE----FY--------------NQ----------RYSHSLLSCQPDFVKLAEAYGIKGV-RI--DDELEAKE 529 (571)
T ss_pred HHHHHHH-HH----Hh--------------CC----------cceeccCCCCCCHHHHHHHCCCeEE-EE--CCHHHHHH
Confidence 1110000 00 00 00 000 000 11345678999999998 45 47899999
Q ss_pred HHHHhHhCCCCCCEEEEEEeecCC
Q 006251 409 IFQRVKEMPAPGPVLIHVVTEKGK 432 (654)
Q Consensus 409 al~~ak~~~~~gP~lI~v~T~KG~ 432 (654)
+++++.+. ++|++|++.+....
T Consensus 530 al~~a~~~--~~p~lieV~vd~~~ 551 (571)
T PRK07710 530 QLQHAIEL--QEPVVIDCRVLQSE 551 (571)
T ss_pred HHHHHHhC--CCCEEEEEEecCcc
Confidence 99999864 78999999997543
No 119
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=99.03 E-value=1.2e-09 Score=112.23 Aligned_cols=140 Identities=21% Similarity=0.304 Sum_probs=88.6
Q ss_pred CcccchhhHHHHHHHHHHHHH-cCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCc
Q 006251 251 GAGHSSTSISAGLGMAVARDI-LGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATP 329 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl-~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~ 329 (654)
+.|.+|+++++|+|.++|..- ..++++|||+.|||++.. +....+.++.++++|+++||.||+.......+ ......
T Consensus 62 ~~g~mG~GlpaAiGA~~a~~~~~~p~~~Vv~i~GDG~~~~-~g~~~l~ta~~~~l~i~ivVlNN~~yg~~~~q-~~~~~~ 139 (237)
T cd02018 62 DANAVASGLKRGLKARFPKDRELDKKKDVVVIGGDGATYD-IGFGALSHSLFRGEDITVIVLDNEVYSNTGGQ-RSGATP 139 (237)
T ss_pred CHHHHHHHHHHHHHhhcccccccCCCCcEEEEeCchHHHh-ccHHHHHHHHHcCCCeEEEEECCccccCCCCC-CCCCCc
Confidence 458999999999999887211 135889999999998741 23456777778899999999999743211111 000000
Q ss_pred hhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHH
Q 006251 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (654)
Q Consensus 330 vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~a 409 (654)
.+.. + + ........-.++.+++++++|+.++..+.=.++++|.++
T Consensus 140 ~g~~------------~-----------~------------~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v~~~~~l~~a 184 (237)
T cd02018 140 LGAD------------S-----------K------------MAPAGKKEDKKDLVLIAATHGCVYVARLSPALKKHFLKV 184 (237)
T ss_pred CCCc------------c-----------c------------ccCCCCcCCCCCHHHHHHHCCCCEEEEEccCCHHHHHHH
Confidence 0000 0 0 000000011234466799999999853322479999999
Q ss_pred HHHhHh-CCCCCCEEEEEEee
Q 006251 410 FQRVKE-MPAPGPVLIHVVTE 429 (654)
Q Consensus 410 l~~ak~-~~~~gP~lI~v~T~ 429 (654)
|+++.+ . ++|++|++.+.
T Consensus 185 l~~al~~~--~GP~lI~v~i~ 203 (237)
T cd02018 185 VKEAISRT--DGPTFIHAYTP 203 (237)
T ss_pred HHHHHhcC--CCCEEEEEeCC
Confidence 999975 5 78999999964
No 120
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=99.03 E-value=1.4e-09 Score=124.00 Aligned_cols=123 Identities=23% Similarity=0.307 Sum_probs=88.4
Q ss_pred cccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCC-CCcccccccCCCCCch
Q 006251 252 AGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNK-QVSLPTATLDGPATPV 330 (654)
Q Consensus 252 ~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~-~~s~pt~~~~g~~~~v 330 (654)
.|++|++++.|+|+++|. ++++|+|++|||+++. ..++|++|.++++|+++||.||+ +.+..
T Consensus 406 ~g~mG~~lp~aiGa~la~----p~~~vv~i~GDG~f~~--~~~eL~ta~~~~lp~~~vv~NN~~~~~~~----------- 468 (530)
T PRK07092 406 SGGLGYGLPAAVGVALAQ----PGRRVIGLIGDGSAMY--SIQALWSAAQLKLPVTFVILNNGRYGALR----------- 468 (530)
T ss_pred CCcccchHHHHHHHHHhC----CCCeEEEEEeCchHhh--hHHHHHHHHHhCCCcEEEEEeChHHHHHH-----------
Confidence 478999999999999985 5789999999999994 56899999999999988888887 32100
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHH
Q 006251 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (654)
Q Consensus 331 gals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al 410 (654)
..++... .++.. .-+.-..+...++++||+.+. .|+ +.+++.+++
T Consensus 469 -----~~~~~~~-----------------~~~~~----------~~~~~~~d~~~~a~~~G~~~~-~v~--~~~~l~~al 513 (530)
T PRK07092 469 -----WFAPVFG-----------------VRDVP----------GLDLPGLDFVALARGYGCEAV-RVS--DAAELADAL 513 (530)
T ss_pred -----HHHHhhC-----------------CCCCC----------CCCCCCCCHHHHHHHCCCeEE-EeC--CHHHHHHHH
Confidence 0000000 00000 000011234567999999988 565 789999999
Q ss_pred HHhHhCCCCCCEEEEEEe
Q 006251 411 QRVKEMPAPGPVLIHVVT 428 (654)
Q Consensus 411 ~~ak~~~~~gP~lI~v~T 428 (654)
+++.+ .++|++|++.|
T Consensus 514 ~~a~~--~~~p~liev~~ 529 (530)
T PRK07092 514 ARALA--ADGPVLVEVEV 529 (530)
T ss_pred HHHHh--CCCCEEEEEEc
Confidence 99876 37999999986
No 121
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.03 E-value=7.4e-10 Score=127.35 Aligned_cols=129 Identities=16% Similarity=0.273 Sum_probs=93.2
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCch
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~v 330 (654)
+.|++|+++|+|+|+++|. ++++|||++|||+++ |....|.+|.++++|+++||.||+..
T Consensus 421 ~~gsmG~glpaAiGa~la~----p~r~Vv~i~GDG~f~--m~~~eL~Ta~r~~lpv~ivV~NN~~y-------------- 480 (574)
T PRK06466 421 GLGTMGFGLPAAMGVKLAF----PDQDVACVTGEGSIQ--MNIQELSTCLQYGLPVKIINLNNGAL-------------- 480 (574)
T ss_pred CcchhhchHHHHHHHHHhC----CCCeEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEeCCcc--------------
Confidence 4589999999999999986 588999999999999 78889999999999999999998732
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhh-hc-cCCChhhhhhhcCCeEEeecCCCCHHHHHH
Q 006251 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYAR-GL-ISASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (654)
Q Consensus 331 gals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r-~~-~~~~~~~lfea~G~~~ig~vDGhDi~~L~~ 408 (654)
+.+.... ... |. ++ +.. .+ ..++...++++||..+. .| .+.++|.+
T Consensus 481 ~~i~~~q-~~~----~~-------------~~-----------~~~~~~~~~~d~~~lA~a~G~~~~-~v--~~~~el~~ 528 (574)
T PRK06466 481 GMVRQWQ-DMQ----YE-------------GR-----------HSHSYMESLPDFVKLAEAYGHVGI-RI--TDLKDLKP 528 (574)
T ss_pred HHHHHHH-HHh----cC-------------Cc-----------eeecCCCCCCCHHHHHHHCCCeEE-EE--CCHHHHHH
Confidence 1111000 000 00 00 000 00 01355678999999987 44 58999999
Q ss_pred HHHHhHhCCCCCCEEEEEEeecCC
Q 006251 409 IFQRVKEMPAPGPVLIHVVTEKGK 432 (654)
Q Consensus 409 al~~ak~~~~~gP~lI~v~T~KG~ 432 (654)
+|+++.+. .++|++|++.+.+..
T Consensus 529 al~~a~~~-~~~p~lIev~i~~~~ 551 (574)
T PRK06466 529 KLEEAFAM-KDRLVFIDIYVDRSE 551 (574)
T ss_pred HHHHHHhc-CCCcEEEEEEeCCcc
Confidence 99988753 278999999997533
No 122
>PRK11269 glyoxylate carboligase; Provisional
Probab=99.03 E-value=1.6e-09 Score=125.02 Aligned_cols=140 Identities=21% Similarity=0.229 Sum_probs=93.1
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCch
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~v 330 (654)
+.|++|+++|+|+|+++|. ++++|||++|||+++ |...+|.+|.++++|+++||.||+..
T Consensus 417 ~~G~mG~glpaAiGa~la~----p~r~Vv~i~GDG~f~--m~~~eL~Ta~~~~lpv~~vV~NN~~~-------------- 476 (591)
T PRK11269 417 QAGPLGWTIPAALGVRAAD----PDRNVVALSGDYDFQ--FLIEELAVGAQFNLPYIHVLVNNAYL-------------- 476 (591)
T ss_pred ccccccchhhhHHhhhhhC----CCCcEEEEEccchhh--cCHHHHHHHHHhCCCeEEEEEeCCch--------------
Confidence 4589999999999999985 588999999999999 77788999999999999999999731
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHH
Q 006251 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (654)
Q Consensus 331 gals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al 410 (654)
+.+.. .+..+...... +.....+.. --.+....+...++++||.++. .| ++.++|.++|
T Consensus 477 g~i~~-~~~~~~~~~~~-------------~~~~~~~~~----~~~~~~~~df~~lA~a~G~~~~-~v--~~~~eL~~al 535 (591)
T PRK11269 477 GLIRQ-AQRAFDMDYCV-------------QLAFENINS----PELNGYGVDHVKVAEGLGCKAI-RV--FKPEDIAPAL 535 (591)
T ss_pred hHHHH-HHHHhccCccc-------------eeecccccc----ccccCCCCCHHHHHHHCCCeEE-EE--CCHHHHHHHH
Confidence 11110 00000000000 000000000 0000012355778999999988 44 6899999999
Q ss_pred HHhHhC--CCCCCEEEEEEeecC
Q 006251 411 QRVKEM--PAPGPVLIHVVTEKG 431 (654)
Q Consensus 411 ~~ak~~--~~~gP~lI~v~T~KG 431 (654)
+++.+. ..++|++|+|.+.+.
T Consensus 536 ~~a~~~~~~~~gp~lieV~v~~~ 558 (591)
T PRK11269 536 EQAKALMAEFRVPVVVEVILERV 558 (591)
T ss_pred HHHHhhcccCCCcEEEEEEeccc
Confidence 998741 137899999999643
No 123
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=99.03 E-value=8.2e-10 Score=126.05 Aligned_cols=122 Identities=20% Similarity=0.224 Sum_probs=89.6
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCC-CcccccccCCCCCc
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQ-VSLPTATLDGPATP 329 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~-~s~pt~~~~g~~~~ 329 (654)
+.|++|+++|+|+|+++|. ++++|||++|||+++ |..++|.+|.++++|+++||.||+. .+....+ +....
T Consensus 402 ~~g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~--m~~~EL~Ta~~~~lpi~~vV~NN~~y~~i~~~~--~~~~~ 473 (539)
T TIGR03393 402 LWGSIGYTLPAAFGAQTAC----PNRRVILLIGDGSAQ--LTIQELGSMLRDKQHPIILVLNNEGYTVERAIH--GAEQR 473 (539)
T ss_pred hhhhhhhHHHHHHHHHhcC----CCCCeEEEEcCcHHH--hHHHHHHHHHHcCCCCEEEEEeCCceEEEEeec--CCCCC
Confidence 4588999999999999885 689999999999999 8889999999999998888888863 2211100 00000
Q ss_pred hhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCe----EEeecCCCCHHH
Q 006251 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLY----YIGPVDGHNVED 405 (654)
Q Consensus 330 vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~----~ig~vDGhDi~~ 405 (654)
. .+.-..+...++++||.+ +. .| ++.++
T Consensus 474 ~---------------------------------------------~~~~~~df~~la~a~G~~~~~~~~-~v--~~~~e 505 (539)
T TIGR03393 474 Y---------------------------------------------NDIALWNWTHLPQALSLDPQSECW-RV--SEAEQ 505 (539)
T ss_pred c---------------------------------------------CcCCCCCHHHHHHHcCCCCccceE-Ee--ccHHH
Confidence 0 000112345578899975 55 44 58999
Q ss_pred HHHHHHHhHhCCCCCCEEEEEEeec
Q 006251 406 LVTIFQRVKEMPAPGPVLIHVVTEK 430 (654)
Q Consensus 406 L~~al~~ak~~~~~gP~lI~v~T~K 430 (654)
|.++++++.+. ++|++|++.+.+
T Consensus 506 l~~al~~a~~~--~~p~liev~i~~ 528 (539)
T TIGR03393 506 LADVLEKVAAH--ERLSLIEVVLPK 528 (539)
T ss_pred HHHHHHHHhcc--CCeEEEEEEcCc
Confidence 99999999874 789999999853
No 124
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=99.02 E-value=1.6e-09 Score=124.22 Aligned_cols=127 Identities=22% Similarity=0.305 Sum_probs=91.0
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCC-CCcccccccCCCCCc
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNK-QVSLPTATLDGPATP 329 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~-~~s~pt~~~~g~~~~ 329 (654)
+.|++|.++++|+|+++|. ++++|||++|||+++ |...+|.+|.++++|+++||.||+ +.++...
T Consensus 417 ~~g~mG~~lpaaiGa~la~----~~~~vv~i~GDGsf~--~~~~eL~ta~~~~lpvi~vV~NN~~~g~~~~~-------- 482 (564)
T PRK08155 417 GLGTMGFGLPAAIGAALAN----PERKVLCFSGDGSLM--MNIQEMATAAENQLDVKIILMNNEALGLVHQQ-------- 482 (564)
T ss_pred CcccccchhHHHHHHHHhC----CCCcEEEEEccchhh--ccHHHHHHHHHhCCCeEEEEEeCCcccccHHH--------
Confidence 4588999999999999986 588999999999999 566779999999999999999987 3221100
Q ss_pred hhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhc-cCCChhhhhhhcCCeEEeecCCCCHHHHHH
Q 006251 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGL-ISASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (654)
Q Consensus 330 vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~-~~~~~~~lfea~G~~~ig~vDGhDi~~L~~ 408 (654)
+..+... .. +..+. -..+...++++||++++ .++ +.++|.+
T Consensus 483 --------q~~~~~~------------------~~---------~~~~~~~~~d~~~~a~a~G~~~~-~v~--~~~el~~ 524 (564)
T PRK08155 483 --------QSLFYGQ------------------RV---------FAATYPGKINFMQIAAGFGLETC-DLN--NEADPQA 524 (564)
T ss_pred --------HHHhcCC------------------Ce---------eeccCCCCCCHHHHHHHCCCeEE-EeC--CHHHHHH
Confidence 0000000 00 00000 01244667999999987 444 7999999
Q ss_pred HHHHhHhCCCCCCEEEEEEeecC
Q 006251 409 IFQRVKEMPAPGPVLIHVVTEKG 431 (654)
Q Consensus 409 al~~ak~~~~~gP~lI~v~T~KG 431 (654)
+++++.+. ++|++|++.+.+.
T Consensus 525 al~~a~~~--~~p~lIeV~~~~~ 545 (564)
T PRK08155 525 ALQEAINR--PGPALIHVRIDAE 545 (564)
T ss_pred HHHHHHhC--CCCEEEEEEeCCC
Confidence 99998864 7899999999643
No 125
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.02 E-value=2.2e-09 Score=113.42 Aligned_cols=154 Identities=21% Similarity=0.339 Sum_probs=107.4
Q ss_pred cCcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCc
Q 006251 250 FGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATP 329 (654)
Q Consensus 250 fg~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~ 329 (654)
...+..|.++++|.|++.|.+.++++..|||+.|||.+.. .-+++|..|.+.+.|+++||.||+..+.+..|.+ ++.+
T Consensus 66 ~~~~~fg~~~a~a~Gi~~a~~~~~~~~~Vv~~~GDG~~~d-IG~~~L~~a~~r~~ni~~ivlDNe~Y~nTGgQ~S-~~Tp 143 (299)
T PRK11865 66 WIHVAFENAAAVASGIERAVKALGKKVNVVAIGGDGGTAD-IGFQSLSGAMERGHNILYLMYDNEAYMNTGIQRS-GSTP 143 (299)
T ss_pred cchhhhcchHHHHHHHHHHHHHhcCCCeEEEEeCCchHhh-ccHHHHHHHHHcCCCeEEEEECCccccCCCCCCC-CCCC
Confidence 3456677889999999999988777889999999998853 3459999999999999999999985443333322 2333
Q ss_pred hhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHH
Q 006251 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (654)
Q Consensus 330 vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~a 409 (654)
.|+.+..- ..|.... - +..-..+...++.++|..|+..++-.|+.++.++
T Consensus 144 ~Ga~t~ts---------------------p~Gk~~~---G------~~~~kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~ 193 (299)
T PRK11865 144 FGASTTTS---------------------PAGKYSR---G------EDRPKKNMPLIMAAHGIPYVATASIGYPEDFMEK 193 (299)
T ss_pred CCcccccC---------------------CCCcccC---C------CCCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHH
Confidence 44432100 0010000 0 0000012234678899999988888899999999
Q ss_pred HHHhHhCCCCCCEEEEEEee--cCCCCChh
Q 006251 410 FQRVKEMPAPGPVLIHVVTE--KGKGYPPA 437 (654)
Q Consensus 410 l~~ak~~~~~gP~lI~v~T~--KG~G~~~a 437 (654)
+++|.+. +||.+||+.+. .|+|+.+.
T Consensus 194 i~~A~~~--~Gps~I~v~sPC~~~~~~~~~ 221 (299)
T PRK11865 194 VKKAKEV--EGPAYIQVLQPCPTGWGFPPE 221 (299)
T ss_pred HHHHHhC--CCCEEEEEECCCCCCCCCCHH
Confidence 9999875 79999999886 56666553
No 126
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=99.02 E-value=1.7e-09 Score=124.31 Aligned_cols=128 Identities=18% Similarity=0.176 Sum_probs=92.8
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCch
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~v 330 (654)
+.|++|+++|+|+|+++|. +++|||++|||+++ |...+|.+|.++++|+++||.||+... ..
T Consensus 422 ~~gsmG~glpaaiGa~la~-----~~~vv~i~GDG~f~--m~~~EL~Ta~r~~lpi~~vV~NN~~~~-~~---------- 483 (569)
T PRK09259 422 TWGVMGIGMGYAIAAAVET-----GKPVVAIEGDSAFG--FSGMEVETICRYNLPVTVVIFNNGGIY-RG---------- 483 (569)
T ss_pred CCccccccHHHHHHHHhcC-----CCcEEEEecCcccc--ccHHHHHHHHHcCCCEEEEEEeChhHH-HH----------
Confidence 4589999999999999982 78899999999999 778889999999999999999997310 00
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhc-cCCChhhhhhhcCCeEEeecCCCCHHHHHHH
Q 006251 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGL-ISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (654)
Q Consensus 331 gals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~-~~~~~~~lfea~G~~~ig~vDGhDi~~L~~a 409 (654)
....... +... ..-+. -.++..+++++||++++ .| .+.++|.++
T Consensus 484 ------~~~~~~~-----------------~~~~---------~~~~~~~~~d~~~lA~a~G~~~~-~v--~~~~el~~a 528 (569)
T PRK09259 484 ------DDVNLSG-----------------AGDP---------SPTVLVHHARYDKMMEAFGGVGY-NV--TTPDELRHA 528 (569)
T ss_pred ------HHHHhhc-----------------CCCc---------cccccCCCCCHHHHHHHCCCeEE-EE--CCHHHHHHH
Confidence 0000000 0000 00001 12345678999999988 55 489999999
Q ss_pred HHHhHhCCCCCCEEEEEEeecCCC
Q 006251 410 FQRVKEMPAPGPVLIHVVTEKGKG 433 (654)
Q Consensus 410 l~~ak~~~~~gP~lI~v~T~KG~G 433 (654)
++++.+. ++|++|+|.+.+..+
T Consensus 529 l~~a~~~--~~p~lIev~id~~~~ 550 (569)
T PRK09259 529 LTEAIAS--GKPTLINVVIDPAAG 550 (569)
T ss_pred HHHHHhC--CCCEEEEEEECCCCC
Confidence 9998764 799999999976543
No 127
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=99.01 E-value=1.2e-09 Score=125.03 Aligned_cols=128 Identities=21% Similarity=0.344 Sum_probs=92.3
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCch
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~v 330 (654)
+.|++|+++|+|+|+++|. ++++|||++|||+++ +...+|.+|.++++|+++||.||+...
T Consensus 410 ~~g~mG~~l~aaiGa~la~----~~~~vv~~~GDG~f~--~~~~eL~ta~~~~l~~~~vv~NN~~~~------------- 470 (558)
T TIGR00118 410 GLGTMGFGLPAAIGAKVAK----PESTVICITGDGSFQ--MNLQELSTAVQYDIPVKILILNNRYLG------------- 470 (558)
T ss_pred ccccccchhhHHHhhhhhC----CCCcEEEEEcchHHh--ccHHHHHHHHHhCCCeEEEEEeCCchH-------------
Confidence 4588999999999998885 578999999999999 566789999999999999999997421
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhh-hcc-CCChhhhhhhcCCeEEeecCCCCHHHHHH
Q 006251 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYAR-GLI-SASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (654)
Q Consensus 331 gals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r-~~~-~~~~~~lfea~G~~~ig~vDGhDi~~L~~ 408 (654)
.+.. .+..+... .+.. ... ..+...++++||++++ .|+ +.++|.+
T Consensus 471 -~~~~-~q~~~~~~----------------------------~~~~~~~~~~~d~~~~a~a~G~~~~-~v~--~~~~l~~ 517 (558)
T TIGR00118 471 -MVRQ-WQELFYEE----------------------------RYSHTHMGSLPDFVKLAEAYGIKGI-RIE--KPEELDE 517 (558)
T ss_pred -HHHH-HHHHhcCC----------------------------ceeeccCCCCCCHHHHHHHCCCeEE-EEC--CHHHHHH
Confidence 1100 00000000 0000 000 1345678999999987 554 6899999
Q ss_pred HHHHhHhCCCCCCEEEEEEeecCC
Q 006251 409 IFQRVKEMPAPGPVLIHVVTEKGK 432 (654)
Q Consensus 409 al~~ak~~~~~gP~lI~v~T~KG~ 432 (654)
+++++.+. ++|++|++.+.+..
T Consensus 518 al~~a~~~--~~p~liev~~~~~~ 539 (558)
T TIGR00118 518 KLKEALSS--NEPVLLDVVVDKPE 539 (558)
T ss_pred HHHHHHhC--CCCEEEEEEeCCcc
Confidence 99998864 79999999997533
No 128
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=99.00 E-value=1.2e-09 Score=115.74 Aligned_cols=133 Identities=20% Similarity=0.248 Sum_probs=89.1
Q ss_pred ccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCC-CcccccccCCCCCchh
Q 006251 253 GHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQ-VSLPTATLDGPATPVG 331 (654)
Q Consensus 253 G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~-~s~pt~~~~g~~~~vg 331 (654)
|.+|.++|+|+|+++|. ++++|||+.|||++. ++....|.+|.+++.|+++||.||+. ..+.. +.. ++.+.+
T Consensus 70 g~mG~alpaAiGaklA~----pd~~VV~i~GDG~~~-~mg~~eL~tA~r~nl~i~vIV~NN~~YG~t~g-Q~s-~t~~~g 142 (301)
T PRK05778 70 TLHGRAIAFATGAKLAN----PDLEVIVVGGDGDLA-SIGGGHFIHAGRRNIDITVIVENNGIYGLTKG-QAS-PTTPEG 142 (301)
T ss_pred hhhccHHHHHHHHHHHC----CCCcEEEEeCccHHH-hccHHHHHHHHHHCCCcEEEEEeCchhhcccC-ccc-CCcCCC
Confidence 66788999999999885 689999999999972 24456799999999999999999974 32221 111 000011
Q ss_pred hhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHHH
Q 006251 332 ALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQ 411 (654)
Q Consensus 332 als~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al~ 411 (654)
.... +...|. ..-..+...+++++|+.++....-.+.++|.++++
T Consensus 143 ~~~~---------------------~~~~g~--------------~~~~~d~~~lA~a~G~~~va~~~v~~~~eL~~ai~ 187 (301)
T PRK05778 143 SKTK---------------------TAPYGN--------------IEPPIDPCALALAAGATFVARSFAGDVKQLVELIK 187 (301)
T ss_pred cccc---------------------cccCCC--------------cCCCCCHHHHHHHCCCCEEEEeccCCHHHHHHHHH
Confidence 0000 000000 00012345679999998864334468999999999
Q ss_pred HhHhCCCCCCEEEEEEee
Q 006251 412 RVKEMPAPGPVLIHVVTE 429 (654)
Q Consensus 412 ~ak~~~~~gP~lI~v~T~ 429 (654)
++.+. ++|.+|++.+.
T Consensus 188 ~A~~~--~GpalIeV~~~ 203 (301)
T PRK05778 188 KAISH--KGFAFIDVLSP 203 (301)
T ss_pred HHHhC--CCCEEEEEcCC
Confidence 99874 79999998774
No 129
>PLN02573 pyruvate decarboxylase
Probab=99.00 E-value=1.3e-09 Score=125.57 Aligned_cols=121 Identities=19% Similarity=0.218 Sum_probs=89.0
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCc-ccccccCCCCCc
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVS-LPTATLDGPATP 329 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s-~pt~~~~g~~~~ 329 (654)
+.|++|+++++|+|+++|. ++++|||++|||+++ |...+|.+|.++++|+++||.||+... ....+ . ..
T Consensus 426 ~~gsmG~glpaaiGa~lA~----p~r~vv~i~GDG~f~--m~~~EL~Ta~r~~lpvv~vV~NN~~yg~~~~~~-~---~~ 495 (578)
T PLN02573 426 QYGSIGWSVGATLGYAQAA----PDKRVIACIGDGSFQ--VTAQDVSTMIRCGQKSIIFLINNGGYTIEVEIH-D---GP 495 (578)
T ss_pred chhhhhhhhhHHHHHHHhC----CCCceEEEEeccHHH--hHHHHHHHHHHcCCCCEEEEEeCCceeEEEeec-c---cC
Confidence 4689999999999999986 588999999999999 888999999999999999888887421 11000 0 00
Q ss_pred hhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcC-----CeEEeecCCCCHH
Q 006251 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELG-----LYYIGPVDGHNVE 404 (654)
Q Consensus 330 vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G-----~~~ig~vDGhDi~ 404 (654)
+. +.-..+...++++|| +.+. .|+ +.+
T Consensus 496 ~~---------------------------------------------~~~~~d~~~lA~a~G~~~g~~~~~-~V~--~~~ 527 (578)
T PLN02573 496 YN---------------------------------------------VIKNWNYTGLVDAIHNGEGKCWTA-KVR--TEE 527 (578)
T ss_pred cc---------------------------------------------ccCCCCHHHHHHHhcCcCCceeEE-Eec--CHH
Confidence 00 000123355688875 7776 554 799
Q ss_pred HHHHHHHHhHhCCCCCCEEEEEEee
Q 006251 405 DLVTIFQRVKEMPAPGPVLIHVVTE 429 (654)
Q Consensus 405 ~L~~al~~ak~~~~~gP~lI~v~T~ 429 (654)
+|.++|+++.+...++|++|++.+.
T Consensus 528 eL~~al~~a~~~~~~~p~lieV~v~ 552 (578)
T PLN02573 528 ELIEAIATATGEKKDCLCFIEVIVH 552 (578)
T ss_pred HHHHHHHHHHhhCCCCcEEEEEEcC
Confidence 9999999987422378999999985
No 130
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=99.00 E-value=1.8e-09 Score=125.03 Aligned_cols=133 Identities=18% Similarity=0.314 Sum_probs=93.2
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCch
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~v 330 (654)
+.|++|.++++|+|+++|. ++++|+|++|||+++ |...+|.+|.++++|+++||.||+..
T Consensus 445 ~~G~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~--m~~~eL~Ta~~~~lpv~ivV~NN~~~-------------- 504 (612)
T PRK07789 445 GLGTMGYAVPAAMGAKVGR----PDKEVWAIDGDGCFQ--MTNQELATCAIEGIPIKVALINNGNL-------------- 504 (612)
T ss_pred CcccccchhhhHHhhhccC----CCCcEEEEEcchhhh--ccHHHHHHHHHcCCCeEEEEEECCch--------------
Confidence 5688999999999999885 588999999999999 78899999999999999999888742
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHH
Q 006251 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (654)
Q Consensus 331 gals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al 410 (654)
+.+.. .+.+.....+.. .++. ..+...++..+++++||+.+. .| ++.++|.++|
T Consensus 505 g~i~~-~q~~~~~~~~~~----------------~~~~------~~~~~~~d~~~lA~a~G~~~~-~V--~~~~eL~~al 558 (612)
T PRK07789 505 GMVRQ-WQTLFYEERYSN----------------TDLH------THSHRIPDFVKLAEAYGCVGL-RC--EREEDVDAVI 558 (612)
T ss_pred HHHHH-HHHHhhCCCcce----------------eecC------cCCCCCCCHHHHHHHCCCeEE-EE--CCHHHHHHHH
Confidence 11110 000000000000 0000 000011355778999999998 45 5899999999
Q ss_pred HHhHhCCCCCCEEEEEEeec
Q 006251 411 QRVKEMPAPGPVLIHVVTEK 430 (654)
Q Consensus 411 ~~ak~~~~~gP~lI~v~T~K 430 (654)
+++.+. .++|.+|++.+.+
T Consensus 559 ~~a~~~-~~~p~lIev~i~~ 577 (612)
T PRK07789 559 EKARAI-NDRPVVIDFVVGK 577 (612)
T ss_pred HHHHhc-CCCcEEEEEEECC
Confidence 998763 2689999999964
No 131
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=98.99 E-value=2.3e-09 Score=122.78 Aligned_cols=126 Identities=16% Similarity=0.177 Sum_probs=91.2
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCch
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~v 330 (654)
+.|++|+++|+|+|+++|. +++|||++|||+++ |..++|.+|.++++|+++||.||+... ...+...
T Consensus 415 ~~gsmG~~lpaaiGaala~-----~~~vv~i~GDGsf~--m~~~EL~Ta~r~~l~v~~vV~NN~~~~-~~~~~~~----- 481 (554)
T TIGR03254 415 TWGVMGIGMGYAIAAAVET-----GKPVVALEGDSAFG--FSGMEVETICRYNLPVCVVIFNNGGIY-RGDDVNV----- 481 (554)
T ss_pred CCCcCCchHHHHHHHHhcC-----CCcEEEEEcCchhc--ccHHHHHHHHHcCCCEEEEEEeChhhh-hhhhhhh-----
Confidence 4588999999999999972 68899999999999 777889999999999999999997321 0000000
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhc-cCCChhhhhhhcCCeEEeecCCCCHHHHHHH
Q 006251 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGL-ISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (654)
Q Consensus 331 gals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~-~~~~~~~lfea~G~~~ig~vDGhDi~~L~~a 409 (654)
.+.. ...-++ -..+...++++||.++. .| .+.++|.++
T Consensus 482 -----------------------------~~~~---------~~~~~~~~~~df~~la~a~G~~~~-~v--~~~~el~~a 520 (554)
T TIGR03254 482 -----------------------------VGAD---------PAPTVLVHGARYDKMMKAFGGVGY-NV--TTPDELKAA 520 (554)
T ss_pred -----------------------------cCCC---------CCccccCCCCCHHHHHHHCCCeEE-Ee--CCHHHHHHH
Confidence 0000 000011 12344678999999987 45 589999999
Q ss_pred HHHhHhCCCCCCEEEEEEeecCC
Q 006251 410 FQRVKEMPAPGPVLIHVVTEKGK 432 (654)
Q Consensus 410 l~~ak~~~~~gP~lI~v~T~KG~ 432 (654)
|+++.+. ++|++|++.+.+..
T Consensus 521 l~~a~~~--~~p~lIev~id~~~ 541 (554)
T TIGR03254 521 LNEALAS--GKPTLINAVIDPSA 541 (554)
T ss_pred HHHHHhC--CCCEEEEEEECCCc
Confidence 9998764 78999999986543
No 132
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=98.98 E-value=1.5e-09 Score=125.12 Aligned_cols=131 Identities=19% Similarity=0.217 Sum_probs=92.6
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCch
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~v 330 (654)
+.|++|.++|+|+|+++|. ++++|||++|||+++ +...+|.+|.++++|+++||.||+..
T Consensus 433 ~~g~mG~glp~aiGa~la~----p~r~vv~i~GDG~f~--~~~~el~Ta~~~~lpv~ivV~NN~~y-------------- 492 (588)
T PRK07525 433 SFGNCGYAFPAIIGAKIAC----PDRPVVGFAGDGAWG--ISMNEVMTAVRHNWPVTAVVFRNYQW-------------- 492 (588)
T ss_pred cccccccHHHHHHHHHHhC----CCCcEEEEEcCchHh--ccHHHHHHHHHhCCCeEEEEEeCchh--------------
Confidence 4688999999999999885 588999999999999 56678999999999999999888631
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhh-hcc-CCChhhhhhhcCCeEEeecCCCCHHHHHH
Q 006251 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYAR-GLI-SASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (654)
Q Consensus 331 gals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r-~~~-~~~~~~lfea~G~~~ig~vDGhDi~~L~~ 408 (654)
+.+...... .| +. .+.. +.- ..+...++++||.++. .| ++.++|.+
T Consensus 493 ~~~~~~~~~-----~~--------------~~----------~~~~~~~~~~~d~~~lA~a~G~~~~-~v--~~~~el~~ 540 (588)
T PRK07525 493 GAEKKNQVD-----FY--------------NN----------RFVGTELDNNVSYAGIAEAMGAEGV-VV--DTQEELGP 540 (588)
T ss_pred HHHHHHHHH-----Hh--------------CC----------CcccccCCCCCCHHHHHHHCCCeEE-EE--CCHHHHHH
Confidence 111000000 00 00 0000 000 1245678999999988 55 48999999
Q ss_pred HHHHhHhCC-CCCCEEEEEEeecCCC
Q 006251 409 IFQRVKEMP-APGPVLIHVVTEKGKG 433 (654)
Q Consensus 409 al~~ak~~~-~~gP~lI~v~T~KG~G 433 (654)
+++++.+.. .++|++|+|.+.+..|
T Consensus 541 al~~a~~~~~~~~p~lIev~~~~~~~ 566 (588)
T PRK07525 541 ALKRAIDAQNEGKTTVIEIMCNQELG 566 (588)
T ss_pred HHHHHHhcCCCCCcEEEEEEeccccC
Confidence 999887542 3589999999976554
No 133
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=98.98 E-value=3e-09 Score=122.72 Aligned_cols=126 Identities=19% Similarity=0.335 Sum_probs=91.5
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCch
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~v 330 (654)
+.|++|.++|+|+|+++|. ++++|||++|||+++ |...+|.+|.++++|+++||.||+..
T Consensus 417 ~~gsmG~~lpaaiGa~la~----p~~~Vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~~vV~NN~~~-------------- 476 (586)
T PRK06276 417 GLGTMGFGFPAAIGAKVAK----PDANVIAITGDGGFL--MNSQELATIAEYDIPVVICIFDNRTL-------------- 476 (586)
T ss_pred CccccccchhHHHhhhhhc----CCCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCCch--------------
Confidence 4588999999999999985 578999999999999 67788999999999999999999731
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhh-hc-cCCChhhhhhhcCCeEEeecCCCCHHHHHH
Q 006251 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYAR-GL-ISASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (654)
Q Consensus 331 gals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r-~~-~~~~~~~lfea~G~~~ig~vDGhDi~~L~~ 408 (654)
+.+.. .++... +. .+.. +. -..+...++++||+++. .| ++.++|.+
T Consensus 477 g~~~~-~~~~~~------------------~~----------~~~~~~~~~~~d~~~la~a~G~~~~-~v--~~~~el~~ 524 (586)
T PRK06276 477 GMVYQ-WQNLYY------------------GK----------RQSEVHLGETPDFVKLAESYGVKAD-RV--EKPDEIKE 524 (586)
T ss_pred HHHHH-HHHHHh------------------CC----------CcccccCCCCCCHHHHHHHCCCeEE-EE--CCHHHHHH
Confidence 11100 000000 00 0000 00 01345678999999987 44 58999999
Q ss_pred HHHHhHhCCCCCCEEEEEEeec
Q 006251 409 IFQRVKEMPAPGPVLIHVVTEK 430 (654)
Q Consensus 409 al~~ak~~~~~gP~lI~v~T~K 430 (654)
+|+++.+. ++|.+|++.+.+
T Consensus 525 al~~a~~~--~~p~lIeV~i~~ 544 (586)
T PRK06276 525 ALKEAIKS--GEPYLLDIIIDP 544 (586)
T ss_pred HHHHHHhC--CCCEEEEEEecc
Confidence 99998764 799999999964
No 134
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=98.97 E-value=2.6e-09 Score=122.77 Aligned_cols=136 Identities=19% Similarity=0.257 Sum_probs=90.0
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCC-CCcccccccCCCCCc
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNK-QVSLPTATLDGPATP 329 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~-~~s~pt~~~~g~~~~ 329 (654)
+.|++|.++|+|+|+++|. ++++|||++|||+++.+..-+++++|.++++|+++||.||+ +.++...+
T Consensus 428 ~~gsmG~~lp~aiGa~la~----p~~~vv~i~GDG~f~~~~~e~~l~ta~~~~l~~~ivv~NN~~yg~~~~~~------- 496 (569)
T PRK08327 428 SAGGLGWALGAALGAKLAT----PDRLVIATVGDGSFIFGVPEAAHWVAERYGLPVLVVVFNNGGWLAVKEAV------- 496 (569)
T ss_pred CCCCCCcchHHHHHHhhcC----CCCeEEEEecCcceeecCcHHHHHHHHHhCCCEEEEEEeCcccccchhHH-------
Confidence 5689999999999988874 68999999999999976544579999999999999999996 32211100
Q ss_pred hhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhc-cCCChhhhhhhcCCeEEeecCCCCHHHHHH
Q 006251 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGL-ISASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (654)
Q Consensus 330 vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~-~~~~~~~lfea~G~~~ig~vDGhDi~~L~~ 408 (654)
..+... .+.. ...... ..+. -..+...++++||+.+. .|+ +.++|..
T Consensus 497 --------~~~~~~-~~~~--------------~~~~~~------~~~~~~~~d~~~la~a~G~~~~-~v~--~~~el~~ 544 (569)
T PRK08327 497 --------LEVYPE-GYAA--------------RKGTFP------GTDFDPRPDFAKIAEAFGGYGE-RVE--DPEELKG 544 (569)
T ss_pred --------hhhCcc-cccc--------------cccccc------cccCCCCCCHHHHHHhCCCCce-EeC--CHHHHHH
Confidence 000000 0000 000000 0000 01244667999999887 554 8999999
Q ss_pred HHHHhHhC--CCCCCEEEEEEee
Q 006251 409 IFQRVKEM--PAPGPVLIHVVTE 429 (654)
Q Consensus 409 al~~ak~~--~~~gP~lI~v~T~ 429 (654)
+++++.+. ++++|++|++.+.
T Consensus 545 al~~a~~~~~~~~gp~liev~v~ 567 (569)
T PRK08327 545 ALRRALAAVRKGRRSAVLDVIVD 567 (569)
T ss_pred HHHHHHHHHhcCCCcEEEEEEcc
Confidence 99887653 2257999999863
No 135
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=98.97 E-value=2.3e-09 Score=123.08 Aligned_cols=126 Identities=18% Similarity=0.284 Sum_probs=89.8
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCch
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~v 330 (654)
+.|++|+++|+|+|+++|. ++++|||++|||+++ |...+|.+|.++++|+++||.||+...
T Consensus 416 ~~g~mG~glpaaiGa~lA~----p~~~Vv~i~GDG~f~--m~~~eL~Ta~~~~l~i~~vV~NN~~y~------------- 476 (566)
T PRK07282 416 GLGTMGFGIPAAIGAKIAN----PDKEVILFVGDGGFQ--MTNQELAILNIYKVPIKVVMLNNHSLG------------- 476 (566)
T ss_pred ccccccchhhHhheeheec----CCCcEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEeCCCch-------------
Confidence 4588999999999999885 688999999999999 788899999999999999988887321
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhc-cCCChhhhhhhcCCeEEeecCCCCHHHHHHH
Q 006251 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGL-ISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (654)
Q Consensus 331 gals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~-~~~~~~~lfea~G~~~ig~vDGhDi~~L~~a 409 (654)
.+.. .+..+ |. +.. ...++ -.++...++++||.++. .| ++.++|.++
T Consensus 477 -~i~~-~q~~~----~~-------------~~~----------~~~~~~~~~d~~~lA~a~G~~~~-~v--~~~~el~~a 524 (566)
T PRK07282 477 -MVRQ-WQESF----YE-------------GRT----------SESVFDTLPDFQLMAQAYGIKHY-KF--DNPETLAQD 524 (566)
T ss_pred -HHHH-HHHHH----hC-------------CCc----------ccccCCCCCCHHHHHHHCCCEEE-EE--CCHHHHHHH
Confidence 1100 00000 00 000 00001 02345778999999987 44 489999999
Q ss_pred HHHhHhCCCCCCEEEEEEeec
Q 006251 410 FQRVKEMPAPGPVLIHVVTEK 430 (654)
Q Consensus 410 l~~ak~~~~~gP~lI~v~T~K 430 (654)
++.+ . .++|++|++.+.+
T Consensus 525 l~~~-~--~~~p~lIeV~v~~ 542 (566)
T PRK07282 525 LEVI-T--EDVPMLIEVDISR 542 (566)
T ss_pred HHHh-c--CCCCEEEEEEeCC
Confidence 9754 3 3799999999964
No 136
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=98.96 E-value=2.1e-09 Score=122.64 Aligned_cols=122 Identities=18% Similarity=0.219 Sum_probs=88.9
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCC-CcccccccCCCCCc
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQ-VSLPTATLDGPATP 329 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~-~s~pt~~~~g~~~~ 329 (654)
+-|++|+++|+|+|+++|. ++++|+++|||+++ |...+|.+|.++++|+++||.||+. .+....+...
T Consensus 401 ~~g~mG~glpaaiGa~lA~-----~~r~v~i~GDG~f~--m~~~EL~Ta~r~~lpv~~vV~NN~~y~~~~~~~~~~---- 469 (535)
T TIGR03394 401 YYAGMGFGVPAGIGAQCTS-----GKRILTLVGDGAFQ--MTGWELGNCRRLGIDPIVILFNNASWEMLRVFQPES---- 469 (535)
T ss_pred ccchhhhHHHHHHHHHhCC-----CCCeEEEEeChHHH--hHHHHHHHHHHcCCCcEEEEEECCccceeehhccCC----
Confidence 3488999999999999984 45678899999999 8889999999999999988888863 2211110000
Q ss_pred hhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHH
Q 006251 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (654)
Q Consensus 330 vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~a 409 (654)
.+ .++-..+..+++++||.++. .| ++.++|.++
T Consensus 470 ---------------~~-----------------------------~~~~~~d~~~lA~a~G~~~~-~v--~~~~eL~~a 502 (535)
T TIGR03394 470 ---------------AF-----------------------------NDLDDWRFADMAAGMGGDGV-RV--RTRAELAAA 502 (535)
T ss_pred ---------------Cc-----------------------------ccCCCCCHHHHHHHcCCCce-Ee--CCHHHHHHH
Confidence 00 00011244567999999987 45 489999999
Q ss_pred HHHhHhCCCCCCEEEEEEeecC
Q 006251 410 FQRVKEMPAPGPVLIHVVTEKG 431 (654)
Q Consensus 410 l~~ak~~~~~gP~lI~v~T~KG 431 (654)
++++.+. .++|++|++.+.+.
T Consensus 503 l~~a~~~-~~~p~lIev~i~~~ 523 (535)
T TIGR03394 503 LDKAFAT-RGRFQLIEAMLPRG 523 (535)
T ss_pred HHHHHhc-CCCeEEEEEECCcc
Confidence 9998753 24589999998543
No 137
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=98.94 E-value=3e-09 Score=122.05 Aligned_cols=126 Identities=19% Similarity=0.212 Sum_probs=88.1
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCC-CcccccccCCCCCc
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQ-VSLPTATLDGPATP 329 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~-~s~pt~~~~g~~~~ 329 (654)
|.|.+|+++|+|+|+++| ++++|||++|||+++ |...++.+|.++++|+++||.||+. .+..... . ...
T Consensus 423 g~~~~G~~lpaaiGaala-----~~~~vv~i~GDGsf~--~~~~eL~Ta~r~~l~i~ivVlNN~g~~~~~~~~-~-~~~- 492 (568)
T PRK07449 423 GASGIDGLLSTAAGVARA-----SAKPTVALIGDLSFL--HDLNGLLLLKQVPAPLTIVVVNNNGGGIFSLLP-Q-PEE- 492 (568)
T ss_pred CccchhhHHHHHHHHHhc-----CCCCEEEEechHHhh--cCcHHHHhhcccCCCeEEEEEECCCCccccCCC-C-CCC-
Confidence 457789999999999987 378899999999999 5557799999999999998888873 2110000 0 000
Q ss_pred hhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHH
Q 006251 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (654)
Q Consensus 330 vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~a 409 (654)
...+. .+.......+...++++||+.+. .| ++.++|.++
T Consensus 493 -------------~~~~~-------------------------~~~~~~~~~df~~lA~a~G~~~~-~V--~~~~eL~~a 531 (568)
T PRK07449 493 -------------EPVFE-------------------------RFFGTPHGVDFAHAAAMYGLEYH-RP--ETWAELEEA 531 (568)
T ss_pred -------------cchhh-------------------------HhhcCCCCCCHHHHHHHcCCCcc-CC--CCHHHHHHH
Confidence 00000 00000112345678999999887 45 589999999
Q ss_pred HHHhHhCCCCCCEEEEEEee
Q 006251 410 FQRVKEMPAPGPVLIHVVTE 429 (654)
Q Consensus 410 l~~ak~~~~~gP~lI~v~T~ 429 (654)
++++.+. ++|++|++.+.
T Consensus 532 l~~a~~~--~~p~lIev~id 549 (568)
T PRK07449 532 LADALPT--PGLTVIEVKTN 549 (568)
T ss_pred HHHHhcC--CCCEEEEEeCC
Confidence 9998764 79999999985
No 138
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=98.92 E-value=7.9e-09 Score=109.02 Aligned_cols=132 Identities=16% Similarity=0.228 Sum_probs=88.0
Q ss_pred ccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCC-cccchHHHHHHHHhhcCCCEEEEEECCC-CCcccccccCCCCCch
Q 006251 253 GHSSTSISAGLGMAVARDILGKNNNVISVIGDGA-MTAGQAYEAMNNAGFLDANLIVVLNDNK-QVSLPTATLDGPATPV 330 (654)
Q Consensus 253 G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGa-l~eG~~~EAln~A~~~~lnLi~Il~dN~-~~s~pt~~~~g~~~~v 330 (654)
|.+|.++++|+|+++|. ++++|||++|||+ ++ +....+.+|.++++|+++||.||+ +.++.. +.. ++.+.
T Consensus 69 g~mG~alpaAiGaklA~----Pd~~VV~i~GDG~~f~--mg~~eL~tA~r~nl~i~vIV~NN~~yGmt~~-q~s-~tt~~ 140 (286)
T PRK11867 69 TIHGRALAIATGLKLAN----PDLTVIVVTGDGDALA--IGGNHFIHALRRNIDITYILFNNQIYGLTKG-QYS-PTSPV 140 (286)
T ss_pred hhhhcHHHHHHHHHHhC----CCCcEEEEeCccHHHh--CCHHHHHHHHHhCCCcEEEEEeCHHHhhhcC-ccC-CCCCC
Confidence 67889999999999885 6899999999995 76 455679999999999999999997 333221 111 10001
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHH
Q 006251 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (654)
Q Consensus 331 gals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al 410 (654)
+.... ....|.. . ...+...+++++|..++....-.+.+++.++|
T Consensus 141 g~~~~---------------------~~~~g~~-~-------------~~~d~~~lA~a~Ga~~va~~~~~~~~el~~al 185 (286)
T PRK11867 141 GFVTK---------------------TTPYGSI-E-------------PPFNPVELALGAGATFVARGFDSDVKQLTELI 185 (286)
T ss_pred Ccccc---------------------cccCCCC-C-------------CCCCHHHHHHHCCCcEEEEecCCCHHHHHHHH
Confidence 00000 0000000 0 00123456889998877544445899999999
Q ss_pred HHhHhCCCCCCEEEEEEee
Q 006251 411 QRVKEMPAPGPVLIHVVTE 429 (654)
Q Consensus 411 ~~ak~~~~~gP~lI~v~T~ 429 (654)
+++.+. ++|++|++.+.
T Consensus 186 ~~Al~~--~Gp~lIev~~~ 202 (286)
T PRK11867 186 KAAINH--KGFSFVEILQP 202 (286)
T ss_pred HHHHhC--CCCEEEEEeCC
Confidence 999874 79999999875
No 139
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=98.91 E-value=6.4e-09 Score=109.18 Aligned_cols=133 Identities=17% Similarity=0.180 Sum_probs=85.2
Q ss_pred cchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCC-CcccccccCCCCCchhh
Q 006251 254 HSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQ-VSLPTATLDGPATPVGA 332 (654)
Q Consensus 254 ~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~-~s~pt~~~~g~~~~vga 332 (654)
.+|.++|+|+|+++|. ++++|||+.|||+++. +.-..+.+|.++++|+++||.||+. .++.. +.. ...+.+.
T Consensus 69 ~~G~alPaAiGaklA~----Pdr~VV~i~GDG~f~~-~g~~el~ta~r~nlpi~iIV~NN~~yGmt~~-Q~~-~~t~~g~ 141 (277)
T PRK09628 69 THGRAVAYATGIKLAN----PDKHVIVVSGDGDGLA-IGGNHTIHGCRRNIDLNFILINNFIYGLTNS-QTS-PTTPKGM 141 (277)
T ss_pred ccccHHHHHHHHHHHC----CCCeEEEEECchHHHH-hhHHHHHHHHHhCcCeEEEEEEChHHhccee-ccc-CCCCCCc
Confidence 5678899999999886 6899999999999852 3334566789999999999999973 32211 110 0000000
Q ss_pred hhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHHHH
Q 006251 333 LSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQR 412 (654)
Q Consensus 333 ls~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al~~ 412 (654)
.. .....+. .....+...+++++|+.++....=.+.++|.+++++
T Consensus 142 ~~---------------------~~~~~g~--------------~~~~~D~~~lA~a~G~~~va~~~v~~~~el~~al~~ 186 (277)
T PRK09628 142 WT---------------------VTAQYGN--------------IDPTFDACKLATAAGASFVARESVIDPQKLEKLLVK 186 (277)
T ss_pred ee---------------------eeccCCC--------------cCCCCCHHHHHHHCCCceEEEEccCCHHHHHHHHHH
Confidence 00 0000000 000113356789999987521222589999999999
Q ss_pred hHhCCCCCCEEEEEEeec
Q 006251 413 VKEMPAPGPVLIHVVTEK 430 (654)
Q Consensus 413 ak~~~~~gP~lI~v~T~K 430 (654)
+.+. +||++|++.+.-
T Consensus 187 Al~~--~Gp~lIeV~~~c 202 (277)
T PRK09628 187 GFSH--KGFSFFDVFSNC 202 (277)
T ss_pred HHhC--CCCEEEEEcCCC
Confidence 9875 799999998753
No 140
>PF03894 XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; InterPro: IPR005593 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=98.88 E-value=7.6e-09 Score=100.28 Aligned_cols=140 Identities=16% Similarity=0.236 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHhhCC-cEEEEecCccCCCChhhHHH--------h-------C---CCCccccchhHHHHHHHHHHHHhc
Q 006251 469 QYFAESLIKEAETDD-KIVAIHAAMGGGTGLNYFQK--------R-------F---PDRCFDVGIAEQHAVTFAAGLASE 529 (654)
Q Consensus 469 ~a~~~aL~~~~~~d~-~vvvl~aDlg~s~~l~~f~~--------~-------f---p~R~id~GIaE~~mvg~AaGlA~~ 529 (654)
.++++.|.++++.|+ ++.++++|...|.++....+ . + +++.+..-++|+.+.|++.|+.+.
T Consensus 2 ~~lg~~l~dv~~~N~~nfRvf~PDEt~SNrL~~v~e~t~r~w~~~~~~~~~~~~~~~~G~V~e~LSEh~c~G~leGY~Lt 81 (179)
T PF03894_consen 2 RVLGKYLRDVIKLNPRNFRVFGPDETASNRLNAVFEVTNRQWMARILPPDDDEHLAPGGRVMEVLSEHQCQGWLEGYLLT 81 (179)
T ss_dssp HHHHHHHHHHHHHSTTTEEEEESS-TTTTT-GGGGGT--EE--S----TTT-TTEESS-SEEE-S-HHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHhCCCcceeECCCcchhhchHHHHHhcccccccccCCCcchhhcccCCeeeeecCHHHHHHHHHHHHhc
Confidence 467788888888887 57799999988887632211 0 1 234444569999999999999999
Q ss_pred CCeeEEeehHHHHHhHHHHHHHhhhc-----------CCCC-EEEEEec-CCccCCCCCCCCChhhHHHHhcC----CC-
Q 006251 530 GVKPFCAIYSSFLQRGYDQVVHDVDL-----------QKLP-VRFAMDR-AGLVGADGPTHCGAFDVTFMSCL----PN- 591 (654)
Q Consensus 530 G~~Pi~~tfa~Fl~ra~dQI~~~~a~-----------~~lp-V~~v~~~-~G~~g~dG~tHq~~edla~~r~i----Pn- 591 (654)
|...++.+|..|+. ..|.++++-++ ...| +.++.++ .--.+++|.||| |.+++.++ |+
T Consensus 82 Grhglf~sYEAF~~-ivdsM~~Qh~Kwl~~~~~~~wR~~~~SlN~l~TS~~wrQdhNG~SHQ---dPgfi~~~~~k~~~~ 157 (179)
T PF03894_consen 82 GRHGLFASYEAFAH-IVDSMLNQHAKWLRHARELPWRAPIPSLNYLLTSHVWRQDHNGFSHQ---DPGFIDHVLNKKPDV 157 (179)
T ss_dssp T-EEEEEEEGGGGG-GGHHHHHHHHHHHHHHHH-TTS---B-EEEEEES-CCG-TTT-GGG------THHHHHHCC--T-
T ss_pred CCcccccccchhHH-HHHHHHHHHHHHHHHHHhCcCCCCCcceeEEeeccceecCCCCcccC---CChHHHHHHhcCccc
Confidence 99999999999973 23444444332 1122 3344333 333689999999 34443333 33
Q ss_pred CEEEecCCHHHHHHHHHHHHh
Q 006251 592 MVVMAPSDEAELMHMVATAAV 612 (654)
Q Consensus 592 l~V~~PsD~~E~~~ll~~al~ 612 (654)
++||.|.|++-+.+++..|++
T Consensus 158 ~RvylPpDANtlLav~~~clr 178 (179)
T PF03894_consen 158 VRVYLPPDANTLLAVMDHCLR 178 (179)
T ss_dssp EEEEE-SSHHHHHHHHHHHHH
T ss_pred ceeecCCcHhHHHHHHHHHhc
Confidence 589999999999999999974
No 141
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=98.85 E-value=1.2e-08 Score=107.41 Aligned_cols=133 Identities=17% Similarity=0.207 Sum_probs=84.3
Q ss_pred ccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCC-CcccccccCCCCCchh
Q 006251 253 GHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQ-VSLPTATLDGPATPVG 331 (654)
Q Consensus 253 G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~-~s~pt~~~~g~~~~vg 331 (654)
+.+|.++|+|+|+++|. ++++|||++|||++. ++....|.+|.+++.|+++||.||+. ..+.. ++. +..+.+
T Consensus 53 t~mG~alPaAiGaklA~----Pd~~VVai~GDG~f~-~mg~~eL~tA~r~nl~I~vIVlNN~~yGmt~g-Q~s-p~t~~G 125 (287)
T TIGR02177 53 GLHGRALPVATGIKLAN----PHLKVIVVGGDGDLY-GIGGNHFVAAGRRNVDITVIVHDNQVYGLTKG-QAS-PTLLKG 125 (287)
T ss_pred cccccHHHHHHHHHHHC----CCCcEEEEeCchHHH-hccHHHHHHHHHhCcCeEEEEEECHHHHhhhc-ccc-cCccCC
Confidence 34588899999998885 689999999999973 35667899999999999999999973 32221 111 000011
Q ss_pred hhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHHH
Q 006251 332 ALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQ 411 (654)
Q Consensus 332 als~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al~ 411 (654)
.-.. +...|.. ..++.+...++++++|+...+.+ .+.++|.++++
T Consensus 126 ~~~~---------------------~~~~g~~------------~~~~np~~~a~A~g~g~va~~~~--~~~~eL~~ai~ 170 (287)
T TIGR02177 126 VKTK---------------------SLPYPNI------------QDPVNPLLLAIALGYTFVARGFS--GDVAHLKEIIK 170 (287)
T ss_pred ccee---------------------ecccCcc------------CCCCCHHHHHHhCCCCeEEEEec--CCHHHHHHHHH
Confidence 0000 0000000 00011112334666776554323 68999999999
Q ss_pred HhHhCCCCCCEEEEEEee
Q 006251 412 RVKEMPAPGPVLIHVVTE 429 (654)
Q Consensus 412 ~ak~~~~~gP~lI~v~T~ 429 (654)
+|.+. +||++|++.+.
T Consensus 171 ~Al~~--~GpslIeV~~p 186 (287)
T TIGR02177 171 EAINH--KGYALVDILQP 186 (287)
T ss_pred HHHhC--CCCEEEEEeCC
Confidence 99875 79999999875
No 142
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=98.81 E-value=1.7e-08 Score=116.74 Aligned_cols=126 Identities=21% Similarity=0.289 Sum_probs=89.2
Q ss_pred cccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchH-HHHHHHHhhcCCCEEEEEECCCC-CcccccccCCCCCc
Q 006251 252 AGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQA-YEAMNNAGFLDANLIVVLNDNKQ-VSLPTATLDGPATP 329 (654)
Q Consensus 252 ~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~-~EAln~A~~~~lnLi~Il~dN~~-~s~pt~~~~g~~~~ 329 (654)
.|.+|.++++|+|+++|. ++++||+++|||++. +. ..+|.+|.+++.|+++||.||+. .++...+ .... +
T Consensus 402 ~~~mG~~~~~AiGa~~a~----p~~~Vv~i~GDG~f~--~~g~~eL~tav~~~~~i~~vVlnN~~~g~~~~q~-~~~~-~ 473 (595)
T TIGR03336 402 TLCMGASIGVASGLSKAG----EKQRIVAFIGDSTFF--HTGIPGLINAVYNKANITVVILDNRITAMTGHQP-NPGT-G 473 (595)
T ss_pred eeccCchHHHHhhhhhcC----CCCCEEEEeccchhh--hcCHHHHHHHHHcCCCeEEEEEcCcceeccCCCC-CCCC-C
Confidence 478999999999998875 688999999999998 43 56789999999999999999963 3221110 0000 0
Q ss_pred hhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHH
Q 006251 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (654)
Q Consensus 330 vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~a 409 (654)
... .+ ...-..+...+++++|++++...+-.+++++.++
T Consensus 474 ~~~---------------------------~~--------------~~~~~~d~~~ia~a~G~~~~~v~~~~~l~~l~~a 512 (595)
T TIGR03336 474 VTG---------------------------MG--------------EATKEISIEELCRASGVEFVEVVDPLNVKETIEV 512 (595)
T ss_pred CCC---------------------------CC--------------CcCCCcCHHHHHHHcCCCEEEEeCcCCHHHHHHH
Confidence 000 00 0000123355689999999977677788999999
Q ss_pred HHHhHhCCCCCCEEEEEEe
Q 006251 410 FQRVKEMPAPGPVLIHVVT 428 (654)
Q Consensus 410 l~~ak~~~~~gP~lI~v~T 428 (654)
++++.+. ++|++|++..
T Consensus 513 l~~a~~~--~gp~li~v~~ 529 (595)
T TIGR03336 513 FKAALAA--EGVSVIIAKQ 529 (595)
T ss_pred HHHHHhc--CCCEEEEEcc
Confidence 9998864 7899999865
No 143
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=98.60 E-value=1.4e-07 Score=120.06 Aligned_cols=130 Identities=15% Similarity=0.169 Sum_probs=89.5
Q ss_pred Ccccchh--hHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhc--CCCEEEEEECCCCC-cccccccCC
Q 006251 251 GAGHSST--SISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFL--DANLIVVLNDNKQV-SLPTATLDG 325 (654)
Q Consensus 251 g~G~lG~--~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~--~lnLi~Il~dN~~~-s~pt~~~~g 325 (654)
+-|.+|. ++|.|+|+++|. +++|+|++|||+++ +...+|.+|.++ ++|+++||.||+.. +....
T Consensus 757 ~~G~mG~~G~lpaAIGaala~-----~r~Vv~i~GDGsF~--m~~~EL~Ta~r~~~~lpi~iVV~NN~gggi~~~l---- 825 (1655)
T PLN02980 757 NRGASGIDGLLSTAIGFAVGC-----NKRVLCVVGDISFL--HDTNGLSILSQRIARKPMTILVINNHGGAIFSLL---- 825 (1655)
T ss_pred cCCccchhhhHHHHHHHhhcC-----CCCEEEEEehHHHH--hhhhHHHHhhcccCCCCEEEEEEeCCCcHhhhcC----
Confidence 3477777 599999999884 78899999999999 888999999874 89998888888631 10000
Q ss_pred CCCchhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHH
Q 006251 326 PATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVED 405 (654)
Q Consensus 326 ~~~~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~ 405 (654)
+ +... .+ ... .+.+.-.....+...++++||+++. .| .+.++
T Consensus 826 --~-~~~~------~~-----------------------~~~---~~~~~~~~~~~df~~lA~a~G~~~~-rV--~~~~e 867 (1655)
T PLN02980 826 --P-IAKR------TE-----------------------PRV---LNQYFYTSHDISIENLCLAHGVRHL-HV--GTKSE 867 (1655)
T ss_pred --c-cCCC------Cc-----------------------chh---HHHHhcCCCCCCHHHHHHHcCCcee-ec--CCHHH
Confidence 0 0000 00 000 0000000112345678999999998 55 48999
Q ss_pred HHHHHHHhHhCCCCCCEEEEEEeecC
Q 006251 406 LVTIFQRVKEMPAPGPVLIHVVTEKG 431 (654)
Q Consensus 406 L~~al~~ak~~~~~gP~lI~v~T~KG 431 (654)
|.++++++.+. ++|++|+|.|.+-
T Consensus 868 L~~aL~~a~~~--~~p~lIEV~t~~~ 891 (1655)
T PLN02980 868 LEDALFTSQVE--QMDCVVEVESSID 891 (1655)
T ss_pred HHHHHHHhhcc--CCCEEEEEecChh
Confidence 99999988763 7899999999743
No 144
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=98.55 E-value=2e-07 Score=103.08 Aligned_cols=125 Identities=22% Similarity=0.276 Sum_probs=85.1
Q ss_pred cccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcC-CCEEEEEECCCCCcccccccCCCCCch
Q 006251 252 AGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLD-ANLIVVLNDNKQVSLPTATLDGPATPV 330 (654)
Q Consensus 252 ~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~-lnLi~Il~dN~~~s~pt~~~~g~~~~v 330 (654)
-||.|+++|+|+|.++|. ++++|+.++|||++| ++-+++.+--+++ .|++||+||+++.+... +.|...++
T Consensus 410 WGSIG~t~pAalGa~~A~----~drR~IL~iGDGs~Q--lTvQEiStmiR~gl~p~ifvlNN~GYTIEr~--IHg~~~~Y 481 (557)
T COG3961 410 WGSIGYTLPAALGAALAA----PDRRVILFIGDGSLQ--LTVQEISTMIRWGLKPIIFVLNNDGYTIERA--IHGPTAPY 481 (557)
T ss_pred hhhcccccHhhhhhhhcC----CCccEEEEEcCchhh--hhHHHHHHHHHcCCCcEEEEEcCCCcEEEeh--hcCCCcCc
Confidence 388999999999999997 589999999999999 7888999998886 57888888888754222 44544444
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEee-cCCCCHHHHHHH
Q 006251 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGP-VDGHNVEDLVTI 409 (654)
Q Consensus 331 gals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~-vDGhDi~~L~~a 409 (654)
..+.. .+. .++.++||..-... ..-..-+++..+
T Consensus 482 NdI~~-----------------------------Wd~----------------~~l~~afg~~~~~~~~~~~~~~~l~~~ 516 (557)
T COG3961 482 NDIQS-----------------------------WDY----------------TALPEAFGAKNGEAKFRATTGEELALA 516 (557)
T ss_pred ccccc-----------------------------cch----------------hhhhhhcCCCCceEEEeecChHHHHHH
Confidence 43310 111 23456666322111 111345667777
Q ss_pred HHHhHhCCCCCCEEEEEEeec
Q 006251 410 FQRVKEMPAPGPVLIHVVTEK 430 (654)
Q Consensus 410 l~~ak~~~~~gP~lI~v~T~K 430 (654)
++.+++. .+++++|||+..+
T Consensus 517 ~~~~~~~-~~~i~lIEv~lp~ 536 (557)
T COG3961 517 LDVAFAN-NDRIRLIEVMLPV 536 (557)
T ss_pred HHHHhcC-CCceEEEEEecCc
Confidence 7777654 4689999998743
No 145
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=98.49 E-value=5.7e-07 Score=97.94 Aligned_cols=140 Identities=23% Similarity=0.359 Sum_probs=96.8
Q ss_pred CCccccCcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccC
Q 006251 245 SVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLD 324 (654)
Q Consensus 245 s~~~~fg~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~ 324 (654)
+-|.++|-.-+|+-|+-++|+- +..+++-|++++|||+.. |.+-.|.++..+...+++++.||...
T Consensus 436 ~YH~EYgfSCMGYEiaG~lG~K----~a~pdreV~vmVGDGSym--MlnSEL~Tsv~~g~Ki~Vvl~DN~Gy-------- 501 (617)
T COG3962 436 TYHLEYGFSCMGYEIAGGLGAK----AAEPDREVYVMVGDGSYM--MLNSELATSVMLGKKIIVVLLDNRGY-------- 501 (617)
T ss_pred ceeeeecccccccccccccccc----cCCCCCeEEEEEcccchh--hhhHHHHHHHHcCCeEEEEEECCCCc--------
Confidence 3456677788889999888876 445789999999999999 88888999999999999999999621
Q ss_pred CCCCchhhhhHHHHHhhhchhHH-HHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCH
Q 006251 325 GPATPVGALSSALSKLQASTNFR-KLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNV 403 (654)
Q Consensus 325 g~~~~vgals~~l~~~~~~~~~~-~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi 403 (654)
|.+. .|+--..+..|. .+|... + + -.++.-+.+..++++|.... .| +++
T Consensus 502 ------GCIn-~LQm~~Gg~sf~~~~r~~~-----------~-------e--~~~~~vDfA~~A~s~Ga~~~-kv--~~i 551 (617)
T COG3962 502 ------GCIN-RLQMATGGASFNNLLRDTD-----------H-------E--EEILQVDFAAHAESYGAKAY-KV--GTI 551 (617)
T ss_pred ------chhh-hhhhhcCcchhhhhhhhhc-----------c-------c--CCCCcccHHHHHhhcCceeE-ec--CCH
Confidence 1111 011001111111 111110 0 0 01222245666999999987 44 599
Q ss_pred HHHHHHHHHhHhCCCCCCEEEEEEeec
Q 006251 404 EDLVTIFQRVKEMPAPGPVLIHVVTEK 430 (654)
Q Consensus 404 ~~L~~al~~ak~~~~~gP~lI~v~T~K 430 (654)
++|.++|+.+|+. .++++|+++|..
T Consensus 552 ~eL~aAL~~Ak~~--~~ttvi~I~t~P 576 (617)
T COG3962 552 EELEAALADAKAS--DRTTVIVIDTDP 576 (617)
T ss_pred HHHHHHHHHHHhC--CCCEEEEEecCC
Confidence 9999999999985 799999999863
No 146
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=98.22 E-value=1.3e-05 Score=86.79 Aligned_cols=133 Identities=18% Similarity=0.281 Sum_probs=94.5
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCch
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~v 330 (654)
|.|.+|.|+++|+|..+|. ++..|+-+-||+++. |....|.++...++|+.+++-||+.+.
T Consensus 522 GLGtMGfGLPAAIGAsVA~----P~~iViDIDGDaSF~--Mt~~ELat~rq~~~PVKiLiLNNeeqG------------- 582 (675)
T KOG4166|consen 522 GLGTMGFGLPAAIGASVAN----PDAIVIDIDGDASFI--MTVQELATIRQENLPVKILILNNEEQG------------- 582 (675)
T ss_pred CccccccCcchhhcccccC----cccEEEeccCCceee--eehHhhhhhhhcCCceEEEEecchhhh-------------
Confidence 5788999999999999885 799999999999999 888889999999999999999996321
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHH
Q 006251 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (654)
Q Consensus 331 gals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al 410 (654)
...+ ++.++....|. .+.| ..++...+++++|++..++ ..-++|.+.+
T Consensus 583 -MVtQ-Wq~lFYe~rys--------HThQ-------------------~nPnf~klA~AmGikalRV---~K~edL~~k~ 630 (675)
T KOG4166|consen 583 -MVTQ-WQDLFYEARYS--------HTHQ-------------------ENPNFLKLAAAMGIKALRV---TKKEDLREKI 630 (675)
T ss_pred -hHHH-HHHHHHHhhhc--------cccc-------------------cCccHHHHHHhcCCchhee---ehHHHHHHHH
Confidence 1111 11111111111 0111 1233345789999999844 3678899999
Q ss_pred HHhHhCCCCCCEEEEEEeecCCCCCh
Q 006251 411 QRVKEMPAPGPVLIHVVTEKGKGYPP 436 (654)
Q Consensus 411 ~~ak~~~~~gP~lI~v~T~KG~G~~~ 436 (654)
++..+. +||+++++...+-..+-|
T Consensus 631 keflsT--kGPvLleV~v~~kehVlP 654 (675)
T KOG4166|consen 631 KEFLST--KGPVLLEVIVPHKEHVLP 654 (675)
T ss_pred HHHhCC--CCCeEEEEEccCccceee
Confidence 988874 899999998865544433
No 147
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=98.14 E-value=0.00012 Score=80.78 Aligned_cols=206 Identities=19% Similarity=0.243 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCCccHHHHHHHHHhhcC-CC-CcEEEecCCchHHHHHHHcCChHHHHHHHhcC
Q 006251 157 TEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFN-TP-DDKIIWDVGHQAYVHKILTGRRSRMNTMRKTS 234 (654)
Q Consensus 157 ~~~L~~la~~lR~~il~~v~~~~GH~gsslg~vel~~aL~~v~~-~p-~Dr~I~s~GH~aY~~~~l~Gr~~~l~~lrq~g 234 (654)
.++|++.+++=+....+...+.+-. |- ...+|+.+-. -| +|-|+.+-|--. +-.| |..
T Consensus 355 ~k~Lrek~~~ne~~~~~~~~~~~~p----LN---~~~~~~~vre~L~~~d~ilVsEGant----mdig--------r~~- 414 (571)
T KOG1185|consen 355 VKELREKDKQNEAAVEEKAAKKSTP----LN---YYQVLQTVRELLPNDDTILVSEGANT----MDIG--------RTL- 414 (571)
T ss_pred HHHHHHHHHhhHHHHHHHhhccCCC----Cc---HHHHHHHHHHhcCCCCcEEEecCCcc----hhhh--------hhh-
Confidence 3566666666666666555443222 22 2344443321 25 787887744221 1111 111
Q ss_pred CCCCCCCCCCCCccccCcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCC
Q 006251 235 GLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNK 314 (654)
Q Consensus 235 gl~G~p~~~es~~~~fg~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~ 314 (654)
-.+-.|.+. ..-+.| |.+|-|++.| +|.++-.+++.|+|+-||+++- ...-.+.++.++++|+++|+-||+
T Consensus 415 l~~~~Pr~r-LDaGtf--gTMGVG~Gfa----laaa~~~P~~~V~~veGDsaFG--fSaME~ET~vR~~Lpvv~vV~NN~ 485 (571)
T KOG1185|consen 415 LPPRGPRRR-LDAGTF--GTMGVGLGFA----LAAALAAPDRKVVCVEGDSAFG--FSAMELETFVRYKLPVVIVVGNNN 485 (571)
T ss_pred ccCCCcccc-cCCccc--cccccchhHH----HHHHhhCCCCeEEEEecCcccC--cchhhHHHHHHhcCCeEEEEecCC
Confidence 112244432 122233 4455555455 4444455999999999999996 333347789999999888888775
Q ss_pred CC-cccccccCCCCCchhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCe
Q 006251 315 QV-SLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLY 393 (654)
Q Consensus 315 ~~-s~pt~~~~g~~~~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~ 393 (654)
.+ .+.. + +|.+++|.. .+..-+++ .+.. .-.+..+.++||-+
T Consensus 486 Giyg~d~---~--------------------~~~~I~e~~---~~~~~p~~-~l~~----------~~rY~~v~ka~G~k 528 (571)
T KOG1185|consen 486 GIYGLDD---D--------------------GWKQISEQD---PTLDLPPT-ALLA----------NTRYDKVAKAFGGK 528 (571)
T ss_pred cccccCc---c--------------------cHHHHhhcC---cccCCCcc-cccc----------cccHHHHHHHcCCC
Confidence 32 1100 0 111111000 00000000 0000 00124457788866
Q ss_pred EEeecCCCCHHHHHHHHHHhHhCCCCCCEEEEEEeecCC
Q 006251 394 YIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGK 432 (654)
Q Consensus 394 ~ig~vDGhDi~~L~~al~~ak~~~~~gP~lI~v~T~KG~ 432 (654)
.. .|+ .+++|.++++++... +++|++|-+...+..
T Consensus 529 G~-~v~--t~~el~~~l~~a~q~-~~~psvINVlI~p~~ 563 (571)
T KOG1185|consen 529 GY-FVS--TVEELLAALQQACQD-TDKPSVINVLIGPTA 563 (571)
T ss_pred ce-eeC--CHHHHHHHHHHHHhc-CCCCeEEEEEecccc
Confidence 55 454 899999999988764 468999988765443
No 148
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=98.03 E-value=0.00014 Score=80.92 Aligned_cols=156 Identities=15% Similarity=0.182 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEecCccCCCCh-----------h-------hHHH--hCCCCccccchhHHHHHHHHHHH
Q 006251 467 YTQYFAESLIKEAETDDKIVAIHAAMGGGTGL-----------N-------YFQK--RFPDRCFDVGIAEQHAVTFAAGL 526 (654)
Q Consensus 467 ~~~a~~~aL~~~~~~d~~vvvl~aDlg~s~~l-----------~-------~f~~--~fp~R~id~GIaE~~mvg~AaGl 526 (654)
|..+=+-++-.++....+|.+-++|+|.++-- + .+.. +-.--+-|..++|.+..|+--||
T Consensus 566 WaTAEAlA~GSll~qG~nVRiSGqDVGRGTFshRHAM~VdQ~Td~~~IPLN~m~~~qkg~LEvans~LSEEAvLGFEyGm 645 (913)
T KOG0451|consen 566 WATAEALAIGSLLYQGHNVRISGQDVGRGTFSHRHAMLVDQQTDEMFIPLNSMEGGQKGKLEVANSILSEEAVLGFEYGM 645 (913)
T ss_pred hHHHHHHHHHHHHhccCceeeeccccCcccccccceeeeeccccceeeeccccCCCcCCeeEeccccccHhhhhhhhccc
Confidence 33333445566777888999999999976411 1 1111 11124567889999999999999
Q ss_pred HhcC--CeeEEee-hHHHHHhHHHHHHHhh----h--c--CCCCEEEEEecCCccCCCCCCCCChhhHHHHh--------
Q 006251 527 ASEG--VKPFCAI-YSSFLQRGYDQVVHDV----D--L--QKLPVRFAMDRAGLVGADGPTHCGAFDVTFMS-------- 587 (654)
Q Consensus 527 A~~G--~~Pi~~t-fa~Fl~ra~dQI~~~~----a--~--~~lpV~~v~~~~G~~g~dG~tHq~~edla~~r-------- 587 (654)
+.+. ..++.+. |.+|.--| ||+-|- + + ...-+++..+|+ +.| -||-|+++----++.
T Consensus 646 sienP~~L~iWEAQFGDFfNGA--QIIiDTFi~sgE~KWl~ssglvmLLPHG-yDG-AgpeHSSCRiERFLQlCDS~E~~ 721 (913)
T KOG0451|consen 646 SIENPNNLIIWEAQFGDFFNGA--QIIIDTFIVSGETKWLESSGLVMLLPHG-YDG-AGPEHSSCRIERFLQLCDSKETS 721 (913)
T ss_pred ccCCcccceeehhhhcccccCc--eEEEeeeecccchhhhhhCCeEEEccCC-cCC-CCCccchhhHHHHHHHhcccccc
Confidence 9984 6688887 99997332 332221 1 1 123345455543 344 488998743223332
Q ss_pred ---cCCCCEEEecCCHHHHHHHHHHHH-hCCCCcEEEEecCCC
Q 006251 588 ---CLPNMVVMAPSDEAELMHMVATAA-VIDDRPSCFRFPRGN 626 (654)
Q Consensus 588 ---~iPnl~V~~PsD~~E~~~ll~~al-~~~~~P~~ir~~r~~ 626 (654)
.--||.|+-|.++.+...+++.-+ .+-.+|.++..||-.
T Consensus 722 vDGd~VNm~vvnPTTpAQYfHlLRRQ~vrNfRKPLiVv~PK~L 764 (913)
T KOG0451|consen 722 VDGDSVNMHVVNPTTPAQYFHLLRRQLVRNFRKPLIVVAPKTL 764 (913)
T ss_pred CCCcceeEEEeCCCCHHHHHHHHHHHHHHhccCceEEechHHH
Confidence 225799999999999999998544 445679888888765
No 149
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=97.95 E-value=2.8e-05 Score=86.18 Aligned_cols=59 Identities=25% Similarity=0.333 Sum_probs=48.6
Q ss_pred cccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCC-EEEEEECCCCC
Q 006251 252 AGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDAN-LIVVLNDNKQV 316 (654)
Q Consensus 252 ~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~ln-Li~Il~dN~~~ 316 (654)
-|+.|.++++++|.|+|. ++++|+.++|||+++ +..+.+.++-+|++| .+|++||+++.
T Consensus 414 wgsIG~svga~lG~a~a~----~e~rvilfiGDGs~q--lTvQeiStmir~gl~~~if~~NN~GYT 473 (561)
T KOG1184|consen 414 WGSIGWSVGATLGYAQAA----PEKRVILFIGDGSFQ--LTVQEISTMIRWGLKPIIFLINNGGYT 473 (561)
T ss_pred Eeeccccchhhhhhhhcc----CCceEEEEecCccce--eeHHHHHHHHhcCCCcEEEEEeCCceE
Confidence 489999999999999987 579999999999999 567789999999876 55555555563
No 150
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=97.90 E-value=0.0001 Score=78.35 Aligned_cols=131 Identities=21% Similarity=0.297 Sum_probs=91.9
Q ss_pred hhhHHHHHHHHHHHHHcCCCCeEEEEEcCC-CcccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCchhhhh
Q 006251 256 STSISAGLGMAVARDILGKNNNVISVIGDG-AMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALS 334 (654)
Q Consensus 256 G~~is~AlGmAlA~kl~g~~~~VvaviGDG-al~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~vgals 334 (654)
|-.++.|.|+.+|.+ +..||++-||| ++.. -...+..|...+.++++||.||.-.+++..|.+ ++.+.|+..
T Consensus 73 gra~a~atGik~A~~----~l~Viv~gGDG~~~dI--G~~~l~h~~~Rn~dit~iv~DNevYgnTggQ~S-~tTp~G~~t 145 (294)
T COG1013 73 GRAAAVATGIKLANP----ALSVIVIGGDGDAYDI--GGNHLIHALRRNHDITYIVVDNEVYGNTGGQAS-PTTPKGAKT 145 (294)
T ss_pred CcchhhHHHHHHhcc----CCeEEEEecchhHhhh--hhHHHHHHHHcCCCeEEEEECCeecccCCCccC-CCCCCCcee
Confidence 345889999999875 66999999999 4554 456789999999999999999986665555444 344455442
Q ss_pred HHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHHHHhH
Q 006251 335 SALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVK 414 (654)
Q Consensus 335 ~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al~~ak 414 (654)
... ..|.... .| .+...++-++|..|+..+-=-++.++.+.+++|.
T Consensus 146 ~t~---------------------p~Gk~~~---~k----------~d~~~la~a~G~~yVAr~~~~~~~~l~~~i~kA~ 191 (294)
T COG1013 146 KTT---------------------PYGKRSE---KK----------KDPGLLAMAAGATYVARASVGDPKDLTEKIKKAA 191 (294)
T ss_pred eec---------------------CCCCCcC---CC----------CCHHHHHHHCCCCeEEEecccCHHHHHHHHHHHH
Confidence 111 0111000 00 1234567889999987775556899999999888
Q ss_pred hCCCCCCEEEEEEee
Q 006251 415 EMPAPGPVLIHVVTE 429 (654)
Q Consensus 415 ~~~~~gP~lI~v~T~ 429 (654)
+. .||.+|++.+.
T Consensus 192 ~~--~Gps~I~v~sP 204 (294)
T COG1013 192 EH--KGPSFIDVLSP 204 (294)
T ss_pred hc--cCCeEEEEecC
Confidence 76 69999999885
No 151
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=97.86 E-value=0.00027 Score=83.36 Aligned_cols=118 Identities=19% Similarity=0.244 Sum_probs=84.8
Q ss_pred CccccchhHHHHHHHHHHHHhcCC--eeEEee-hHHHH---HhHHHHHHHhh-hc--CCCCEEEEEecCCccCCCCCCCC
Q 006251 508 RCFDVGIAEQHAVTFAAGLASEGV--KPFCAI-YSSFL---QRGYDQVVHDV-DL--QKLPVRFAMDRAGLVGADGPTHC 578 (654)
Q Consensus 508 R~id~GIaE~~mvg~AaGlA~~G~--~Pi~~t-fa~Fl---~ra~dQI~~~~-a~--~~lpV~~v~~~~G~~g~dG~tHq 578 (654)
.++|.+++|.+++|+=-|+++.-. ..+.+. |.+|. +..+||-+..- .+ ....++...+|+. -| .||.|+
T Consensus 628 ~v~nS~LSEeAvlgFEYGYs~~~p~~lvlWEAQFGDFaNgAQvviDQfisSge~KW~r~sgLv~lLPHgy-EG-QGPEHS 705 (906)
T COG0567 628 EVINSPLSEEAVLGFEYGYSLANPKTLVLWEAQFGDFANGAQVVIDQFISSGEQKWGRMSGLVMLLPHGY-EG-QGPEHS 705 (906)
T ss_pred EEEechhhHHHHHhhhhhhhhcCCchhhhhhhhhcccccCCeeeeccccccHHHHHHHhcCceEEccCCC-CC-CCCcCc
Confidence 478999999999999999999853 344555 89996 67788854321 11 3456677766654 33 699999
Q ss_pred ChhhHHH--HhcCCCCEEEecCCHHHHHHHHHH-HHhCCCCcEEEEecCCCC
Q 006251 579 GAFDVTF--MSCLPNMVVMAPSDEAELMHMVAT-AAVIDDRPSCFRFPRGNG 627 (654)
Q Consensus 579 ~~edla~--~r~iPnl~V~~PsD~~E~~~ll~~-al~~~~~P~~ir~~r~~~ 627 (654)
+.-.-.+ +.+=-||+|+.|+++.....+++. ++.....|.++..||...
T Consensus 706 SaRlER~LQLcaE~NmqV~~pstpaq~fHlLRrq~~r~~rkPLiimtPKslL 757 (906)
T COG0567 706 SARLERFLQLCAENNMQVVVPSTPAQYFHLLRRQALRDFRKPLIVMTPKSLL 757 (906)
T ss_pred cchhHHHHHhhHHhCCEEEecCcHHHHHHHHHHHHhhcccCceEecChhhhh
Confidence 8433333 334459999999999999998884 444455799998888763
No 152
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=97.80 E-value=5.9e-05 Score=85.72 Aligned_cols=125 Identities=25% Similarity=0.385 Sum_probs=84.1
Q ss_pred cchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCchhhh
Q 006251 254 HSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGAL 333 (654)
Q Consensus 254 ~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~vgal 333 (654)
.+|.+|+.|-|++++. ++++|++||||.+.. .-..++-+|.+.+.|++++|-||..... +|.++.-+.-
T Consensus 429 ~mGssig~a~g~~~~~-----~k~~va~iGDsTF~H-sGi~~l~nAV~n~~~~~~vvLdN~~tAM-----TGgQp~pg~~ 497 (640)
T COG4231 429 MMGSSIGIAGGLSFAS-----TKKIVAVIGDSTFFH-SGILALINAVYNKANILVVVLDNRTTAM-----TGGQPHPGTG 497 (640)
T ss_pred hccchhhhcccccccc-----CCceEEEeccccccc-cCcHHHHHHHhcCCCeEEEEEeccchhc-----cCCCCCCCcc
Confidence 3455677777776654 489999999999974 3346799999999999999999985321 2222211100
Q ss_pred hHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHHHHh
Q 006251 334 SSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRV 413 (654)
Q Consensus 334 s~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al~~a 413 (654)
++. .|.. ...--+ ..+.+++|..++.++|=+|++++.++++++
T Consensus 498 ------------~~~-----------~g~~--~~~i~i------------ee~~r~~Gv~~v~~vdp~~~~~~~~~~kea 540 (640)
T COG4231 498 ------------VAA-----------EGTK--STAIVI------------EEVVRAMGVEDVETVDPYDVKELSEAIKEA 540 (640)
T ss_pred ------------ccc-----------CCCc--cceeEh------------hHhhhhcCceeeeccCCcchHHHHHHHHHH
Confidence 000 0000 000001 124678999999899999999999999999
Q ss_pred HhCCCCCCEEEEEEe
Q 006251 414 KEMPAPGPVLIHVVT 428 (654)
Q Consensus 414 k~~~~~gP~lI~v~T 428 (654)
++. ++|.+|+++.
T Consensus 541 le~--~gpsViiak~ 553 (640)
T COG4231 541 LEV--PGPSVIIAKR 553 (640)
T ss_pred hcC--CCceEEEEcC
Confidence 986 6899998754
No 153
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=97.51 E-value=0.00063 Score=73.89 Aligned_cols=115 Identities=21% Similarity=0.287 Sum_probs=79.0
Q ss_pred CeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCchhhhhHHHHHhhhchhHHHHHHHHHH
Q 006251 276 NNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKS 355 (654)
Q Consensus 276 ~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~vgals~~l~~~~~~~~~~~~r~~~k~ 355 (654)
..||++.|||..-. .-+..+..|...+.|+++||.||...+.+..|.+ ++.+.|+.+..-
T Consensus 152 ~~v~v~gGDG~~yd-IG~~~l~ha~~r~~ni~~iv~DNe~Y~nTGgQ~S-~tTp~Ga~t~ts------------------ 211 (365)
T cd03377 152 KSVWIIGGDGWAYD-IGYGGLDHVLASGENVNILVLDTEVYSNTGGQAS-KATPLGAVAKFA------------------ 211 (365)
T ss_pred cceEEEecchhhhc-cchhhHHHHHHcCCCeEEEEECCcccccCCCcCC-CCCCCcCcCccC------------------
Confidence 48999999996642 4557888888889999999999985554444433 344455542211
Q ss_pred HHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecC-CCCHHHHHHHHHHhHhCCCCCCEEEEEEee
Q 006251 356 ITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVD-GHNVEDLVTIFQRVKEMPAPGPVLIHVVTE 429 (654)
Q Consensus 356 ~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vD-GhDi~~L~~al~~ak~~~~~gP~lI~v~T~ 429 (654)
..|.... ..+-..++.++|..|+..+- |.++.++.+++++|.+. +||.+|++.+.
T Consensus 212 ---p~Gk~~~--------------kkd~~~ia~a~g~~YVA~~s~~~~~~~~~~~i~eA~~~--~Gps~I~v~sP 267 (365)
T cd03377 212 ---AAGKRTG--------------KKDLGMIAMSYGNVYVAQIALGANDNQTLKAFREAEAY--DGPSLIIAYSP 267 (365)
T ss_pred ---CCCCCCC--------------CcCHHHHHHHcCCCEEEEEecccCHHHHHHHHHHHhcC--CCCEEEEEEcc
Confidence 0010000 01223457788998887764 45999999999999876 89999999885
No 154
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=97.32 E-value=0.16 Score=55.86 Aligned_cols=209 Identities=14% Similarity=0.169 Sum_probs=106.4
Q ss_pred hhhhcCCeEEeecCCC---CHHHHHHHHHHhHhCCCCCCEEEEEEeecCCCC-ChhhcCccccccccCCCCcccccccCC
Q 006251 386 FFEELGLYYIGPVDGH---NVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGY-PPAEAAADRMHGVVKFDPKTGKQFKTK 461 (654)
Q Consensus 386 lfea~G~~~ig~vDGh---Di~~L~~al~~ak~~~~~gP~lI~v~T~KG~G~-~~ae~~~~~~Hg~~~f~~~tg~~~~~~ 461 (654)
+++++|++|. .++-+ +.+.+.++++.+.+. .+|+.|.+.- ++ .+.+.. .+ .....
T Consensus 110 lL~~~~i~~~-~~~~~~~~~~~~~~~a~~~~~~~--~~p~a~l~~~----~~~~~~~~~--~~------------~~~~~ 168 (361)
T TIGR03297 110 LLDALEIPWE-VLSTDNDEALAQIERALAHALAT--SRPYALVVRK----GTFASYKLK--GE------------PANPL 168 (361)
T ss_pred HHHHcCCCEE-ECCCChHHHHHHHHHHHHHHHHH--CCCEEEEEcc----ccccccccc--cC------------CCCCC
Confidence 5889999997 66421 233455666666653 7899887732 22 111100 00 00000
Q ss_pred CCchhHHHHHHHHHHHHHhhCCcEEEEecCccCCCC-hhhHHHh----CCCCccccchhHHHHHHHHHHHHhcC-CeeEE
Q 006251 462 SPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTG-LNYFQKR----FPDRCFDVGIAEQHAVTFAAGLASEG-VKPFC 535 (654)
Q Consensus 462 ~~~~s~~~a~~~aL~~~~~~d~~vvvl~aDlg~s~~-l~~f~~~----fp~R~id~GIaE~~mvg~AaGlA~~G-~~Pi~ 535 (654)
....+..+++ +.+.+.+. ++.+++ .|.|.... +-.+++. +|.+|+.+|--=+ ..++|.|+++.- -++++
T Consensus 169 ~~~~~r~~ai-~~i~~~l~-~~~iVV--~~~G~~s~el~~~~~~~~~~~~~~f~~~GsMG~-a~p~AlG~ala~p~r~Vv 243 (361)
T TIGR03297 169 PTLMTREEAI-AAILDHLP-DNTVIV--STTGKTSRELYELRDRIGQGHARDFLTVGSMGH-ASQIALGLALARPDQRVV 243 (361)
T ss_pred cCCCCHHHHH-HHHHHhCC-CCCEEE--ECCCCCcHHHHHhhcccccCCCCceEeechhhh-HHHHHHHHHHHCCCCCEE
Confidence 1113333444 33444443 233444 34443221 2222211 2667776543332 346778877662 24444
Q ss_pred ee--hHHHHHhHHHHHHHhhhcCC-CCEEEEEecCCccCCCC--CCCCChhhHH-HHhcCCCC-EEEecCCHHHHHHHHH
Q 006251 536 AI--YSSFLQRGYDQVVHDVDLQK-LPVRFAMDRAGLVGADG--PTHCGAFDVT-FMSCLPNM-VVMAPSDEAELMHMVA 608 (654)
Q Consensus 536 ~t--fa~Fl~ra~dQI~~~~a~~~-lpV~~v~~~~G~~g~dG--~tHq~~edla-~~r~iPnl-~V~~PsD~~E~~~ll~ 608 (654)
.+ -..|++..-+ + ..++..+ .|++++.-..|..+..| +++....|.. +.++. |. ..+...++.|+..+++
T Consensus 244 ~i~GDGsflm~~~e-L-~t~~~~~~~nli~VVlNNg~~~~~g~q~~~~~~~d~~~iA~a~-G~~~~~~v~~~~eL~~al~ 320 (361)
T TIGR03297 244 CLDGDGAALMHMGG-L-ATIGTQGPANLIHVLFNNGAHDSVGGQPTVSQHLDFAQIAKAC-GYAKVYEVSTLEELETALT 320 (361)
T ss_pred EEEChHHHHHHHHH-H-HHHHHhCCCCeEEEEEcCccccccCCcCCCCCCCCHHHHHHHC-CCceEEEeCCHHHHHHHHH
Confidence 44 6777654322 2 3334445 47776654433222112 3333334433 33443 54 5788899999999999
Q ss_pred HHHhCCCCcEEEEecC
Q 006251 609 TAAVIDDRPSCFRFPR 624 (654)
Q Consensus 609 ~al~~~~~P~~ir~~r 624 (654)
.+. ..++|++|...-
T Consensus 321 ~a~-~~~gp~lIeV~v 335 (361)
T TIGR03297 321 AAS-SANGPRLIEVKV 335 (361)
T ss_pred HHH-hCCCcEEEEEEe
Confidence 996 467999886543
No 155
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=97.29 E-value=0.00034 Score=79.02 Aligned_cols=60 Identities=28% Similarity=0.455 Sum_probs=54.1
Q ss_pred hhhhcCCeEEeecCCCCHHHHHHHHHHhHhCCCCCCEEEEEEeecCCCCChhhcCccccccccC
Q 006251 386 FFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVVK 449 (654)
Q Consensus 386 lfea~G~~~ig~vDGhDi~~L~~al~~ak~~~~~gP~lI~v~T~KG~G~~~ae~~~~~~Hg~~~ 449 (654)
.|++|||+.+ .|||||+++|.+++.+++.. .++|++|.++|.+|+|.+..+ +..|||.+.
T Consensus 200 r~ea~g~~~~-~V~~~d~d~i~ka~~~a~~~-k~kpt~i~~~t~~g~G~~~ig--~~~~Hg~pl 259 (632)
T KOG0523|consen 200 RFEAFGWNVI-IVDGGDVDEIRKAIGKAKSV-KGKPTAIKATTFIGRGSPYIG--SESVHGAPL 259 (632)
T ss_pred HHHHhCceEE-EEcCcCHHHHHHHHhhhhhc-cCCceeeeeeeeeecCccccc--cccccCCcc
Confidence 5999999998 99999999999999999865 378999999999999998876 578999874
No 156
>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=97.09 E-value=0.012 Score=67.67 Aligned_cols=149 Identities=17% Similarity=0.196 Sum_probs=100.8
Q ss_pred HHHhhCCcEEEEecCccCCCC------h-------------hhHHHh-CCCCccccchhHHHHHHHHHHHHhc--CCeeE
Q 006251 477 KEAETDDKIVAIHAAMGGGTG------L-------------NYFQKR-FPDRCFDVGIAEQHAVTFAAGLASE--GVKPF 534 (654)
Q Consensus 477 ~~~~~d~~vvvl~aDlg~s~~------l-------------~~f~~~-fp~R~id~GIaE~~mvg~AaGlA~~--G~~Pi 534 (654)
-++++.-.|.+-++|+..++- | +.+... -|=-+-|.-++|-+.+|+-.|++++ ...++
T Consensus 661 sLl~EG~hVRlSGQDVERGTFShRH~VLHDQ~~d~~~y~PlnhL~~~Qa~ytV~NSSLSEygVLGFElGYsm~sPNaLVl 740 (1017)
T KOG0450|consen 661 SLLKEGIHVRLSGQDVERGTFSHRHHVLHDQEVDKRTYIPLNHLWPNQAPYTVCNSSLSEYGVLGFELGYSMASPNALVL 740 (1017)
T ss_pred HHHhcCceEEeecccccccccccchhhhcccccCcceecchhhcCCCCCceeeeccchhhhheecceecccccCCCceEE
Confidence 456677778899999886541 1 111111 1335778999999999999999998 46777
Q ss_pred Eee-hHHHH---HhHHHHHHHhh-h--cCCCCEEEEEecCCccCCCCCCCCChhhHHHH-------hcCC----------
Q 006251 535 CAI-YSSFL---QRGYDQVVHDV-D--LQKLPVRFAMDRAGLVGADGPTHCGAFDVTFM-------SCLP---------- 590 (654)
Q Consensus 535 ~~t-fa~Fl---~ra~dQI~~~~-a--~~~lpV~~v~~~~G~~g~dG~tHq~~edla~~-------r~iP---------- 590 (654)
.+. |.+|. |..+||.+-.- + ..+.-+++..+|+ +-| .||-|++.----++ +.+|
T Consensus 741 WEAQFGDFaNtAQ~IiDQFIssGqaKW~rqsGlVllLPHG-yeG-~GPEHSSaR~ERfLQm~nddp~~~p~~~~~~~~Ql 818 (1017)
T KOG0450|consen 741 WEAQFGDFANTAQCIIDQFISSGQAKWVRQSGLVLLLPHG-YEG-MGPEHSSARPERFLQMSNDDPDVFPDEEEFLQRQL 818 (1017)
T ss_pred eehhhccccccchhhHHhHhccchhhhhhhcCeEEEccCC-cCC-CCcccccccHHHHHHhccCCCccCCcccHHHHHHH
Confidence 777 99995 88899965321 1 1234456665654 344 69999863111111 1122
Q ss_pred ---CCEEEecCCHHHHHHHHHHHHhC-CCCcEEEEecCCCC
Q 006251 591 ---NMVVMAPSDEAELMHMVATAAVI-DDRPSCFRFPRGNG 627 (654)
Q Consensus 591 ---nl~V~~PsD~~E~~~ll~~al~~-~~~P~~ir~~r~~~ 627 (654)
|+.|+-+++|.....+|+.-+.+ -.+|.+|+.||...
T Consensus 819 ~dcNw~vvn~tTPaNyfHvLRRQi~~~FRKPliif~pKsLL 859 (1017)
T KOG0450|consen 819 QDCNWQVVNCTTPANYFHVLRRQIHRPFRKPLIIFTPKSLL 859 (1017)
T ss_pred hcCCeEEEecCChHHHHHHHHHHhhhcccCceEEeccHHhh
Confidence 57899999999999999876543 34799999999864
No 157
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=96.97 E-value=0.024 Score=64.35 Aligned_cols=118 Identities=20% Similarity=0.280 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECC-CC---CcccccccCCCCCchhhhh
Q 006251 259 ISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDN-KQ---VSLPTATLDGPATPVGALS 334 (654)
Q Consensus 259 is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN-~~---~s~pt~~~~g~~~~vgals 334 (654)
+|-|+|++.|. .+.+++++||=++-.-++ .|-.......|+++||-|| +. ..+|+.+.. +
T Consensus 428 vSTA~Gi~~a~-----~~ptv~liGDLS~lhD~N--gLl~~k~~~~~ltIvv~NNnGGgIF~~Lp~~~~~----~----- 491 (566)
T COG1165 428 VSTALGIARAT-----QKPTVALIGDLSFLHDLN--GLLLLKKVPQPLTIVVVNNNGGGIFSLLPQAQSE----P----- 491 (566)
T ss_pred HHHHhhhhhhc-----CCceEEEEechhhhhccc--hHhhcCCCCCCeEEEEEeCCCceeeeeccCCCCc----c-----
Confidence 88999999875 566999999988853222 2333444457866665555 43 224443210 0
Q ss_pred HHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHHHHhH
Q 006251 335 SALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVK 414 (654)
Q Consensus 335 ~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al~~ak 414 (654)
..+.+...+-.-+.+.+++.||+.|..+ ++++++.++++.+-
T Consensus 492 -----------------------------------~fe~~F~tPh~ldF~~la~~y~l~y~~~---~s~~~l~~~~~~~~ 533 (566)
T COG1165 492 -----------------------------------VFERLFGTPHGLDFAHLAATYGLEYHRP---QSWDELGEALDQAW 533 (566)
T ss_pred -----------------------------------hHHHhcCCCCCCCHHHHHHHhCcccccc---CcHHHHHHHHhhhc
Confidence 0111222233334556688899998744 58999999998876
Q ss_pred hCCCCCCEEEEEEeecCC
Q 006251 415 EMPAPGPVLIHVVTEKGK 432 (654)
Q Consensus 415 ~~~~~gP~lI~v~T~KG~ 432 (654)
.. .|-++||++|.+-.
T Consensus 534 ~~--~g~~viEvkt~r~~ 549 (566)
T COG1165 534 RR--SGTTVIEVKTDRSD 549 (566)
T ss_pred cC--CCcEEEEEecChhH
Confidence 43 57899999996544
No 158
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=96.77 E-value=0.00089 Score=70.94 Aligned_cols=137 Identities=24% Similarity=0.323 Sum_probs=88.0
Q ss_pred cccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCchh
Q 006251 252 AGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVG 331 (654)
Q Consensus 252 ~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~vg 331 (654)
.|.+|+.|++|+|+-.|. +++.||++-||-.++ ...|.|...++.++|.+-++-||.+..
T Consensus 418 agplgwtipaalgv~~ad----p~r~vvalsgdydfq--fmieelavgaq~k~pyihv~vnnaylg-------------- 477 (592)
T COG3960 418 AGPLGWTIPAALGVCAAD----PKRNVVAISGDYDFQ--FLIEELAVGAQFKIPYIHVLVNNAYLG-------------- 477 (592)
T ss_pred cCCcccccchhhceeecC----CCCceEEeecCchHH--HHHHHHhhhhcccCceEEEEecchHHH--------------
Confidence 599999999999997653 789999999999999 788999999999999999999997521
Q ss_pred hhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHH-HHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHH
Q 006251 332 ALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAA-KVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (654)
Q Consensus 332 als~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~-k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al 410 (654)
-+. |..++|.-..+..-. ++++.. ..+.| +-+-....|++|++.++. .+++++..+|
T Consensus 478 lir------qaqr~f~mdy~v~la--------f~nin~~~~~gy-----gvdhv~v~eglgckairv---~~p~e~a~af 535 (592)
T COG3960 478 LIR------QAQRAFDMDYCVQLA--------FENINSSEVNGY-----GVDHVKVAEGLGCKAIRV---FKPEDIAPAF 535 (592)
T ss_pred HHH------HHHhcCCccceeeeh--------hhccCCcccccc-----CccceeehhccCceeEEe---cChHHhhHHH
Confidence 110 111111100000000 000000 00001 112245689999999966 4678888888
Q ss_pred HHhHhC--CCCCCEEEEEEeec
Q 006251 411 QRVKEM--PAPGPVLIHVVTEK 430 (654)
Q Consensus 411 ~~ak~~--~~~gP~lI~v~T~K 430 (654)
++++.. .-.-|+++++.-++
T Consensus 536 ~~a~~lm~eh~vpvvve~iler 557 (592)
T COG3960 536 EQAKALMAQHRVPVVVEVILER 557 (592)
T ss_pred HHHHHHHHhcCCCeeeehHHHH
Confidence 877542 12469999876543
No 159
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=96.60 E-value=0.0066 Score=74.94 Aligned_cols=59 Identities=22% Similarity=0.201 Sum_probs=48.4
Q ss_pred cccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcc-cchHHHHHHHHhhcCCCEEEEEECCCCC
Q 006251 252 AGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMT-AGQAYEAMNNAGFLDANLIVVLNDNKQV 316 (654)
Q Consensus 252 ~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~-eG~~~EAln~A~~~~lnLi~Il~dN~~~ 316 (654)
.-+||.+++.++|++-+. .+++||+++|||.+. .|+ -|+-+|.+.+.|++++|-||...
T Consensus 467 ~~~MG~~g~~~~G~a~~~----~~~~v~a~iGDgTf~HSG~--~al~~AV~~~~nit~~IL~N~~t 526 (1159)
T PRK13030 467 LTQMGGEGVDWIGHAPFT----ETKHVFQNLGDGTYFHSGS--LAIRQAVAAGANITYKILYNDAV 526 (1159)
T ss_pred eeccCccchhhceecccc----CCCCEEEEeccchhhhcCH--HHHHHHHhcCCCeEEEEEeCCcc
Confidence 346777888888888763 356899999999997 444 48999999999999999999853
No 160
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=96.57 E-value=0.018 Score=62.91 Aligned_cols=118 Identities=17% Similarity=0.108 Sum_probs=88.2
Q ss_pred hCCCCccccchhHHHHHHHHHHHHhcCCeeEEeehHHHHHhHHHHHHHhhhcCCCCEEEEE-ecCCccCCCCCCCCChhh
Q 006251 504 RFPDRCFDVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAM-DRAGLVGADGPTHCGAFD 582 (654)
Q Consensus 504 ~fp~R~id~GIaE~~mvg~AaGlA~~G~~Pi~~tfa~Fl~ra~dQI~~~~a~~~lpV~~v~-~~~G~~g~dG~tHq~~ed 582 (654)
++...+++ .-.|...+++|.|.+..|.|.++.|-...+..+++.+ ..++...+|++++. .++| .+ -|.|+..-.|
T Consensus 46 ~~~~~~vq-~E~E~aA~~~a~GAs~aG~Ra~taTSg~Gl~lm~E~l-~~a~~~e~P~v~v~v~R~~-p~-~g~t~~eq~D 121 (352)
T PRK07119 46 EVGGVFVQ-AESEVAAINMVYGAAATGKRVMTSSSSPGISLKQEGI-SYLAGAELPCVIVNIMRGG-PG-LGNIQPSQGD 121 (352)
T ss_pred HhCCEEEe-eCcHHHHHHHHHHHHhhCCCEEeecCcchHHHHHHHH-HHHHHccCCEEEEEeccCC-CC-CCCCcchhHH
Confidence 44456777 7899999999999999999999999888777888885 66778899977765 3443 22 2346555557
Q ss_pred HHHHhc-----CCCCEEEecCCHHHHHHHHHHHHhC---CCCcEEEEecCC
Q 006251 583 VTFMSC-----LPNMVVMAPSDEAELMHMVATAAVI---DDRPSCFRFPRG 625 (654)
Q Consensus 583 la~~r~-----iPnl~V~~PsD~~E~~~ll~~al~~---~~~P~~ir~~r~ 625 (654)
+-+.+. --++.|+.|+|++|+..+...|+.. ..-|++++....
T Consensus 122 ~~~~~~~~ghgd~~~~vl~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~~ 172 (352)
T PRK07119 122 YFQAVKGGGHGDYRLIVLAPSSVQEMVDLTMLAFDLADKYRNPVMVLGDGV 172 (352)
T ss_pred HHHHHhcCCCCCcceEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcchh
Confidence 544322 2348999999999999988877654 446999988764
No 161
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=96.50 E-value=0.066 Score=51.24 Aligned_cols=114 Identities=15% Similarity=0.128 Sum_probs=75.6
Q ss_pred CCCccccchhHHHHHHHHHHHHhcCCeeEEeehHHHHHhHHHHHHHhhhcCCCCEEEEEecCCccCCC--CCCCCChhhH
Q 006251 506 PDRCFDVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGAD--GPTHCGAFDV 583 (654)
Q Consensus 506 p~R~id~GIaE~~mvg~AaGlA~~G~~Pi~~tfa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~~g~d--G~tHq~~edl 583 (654)
.-|++.+- .|+..+.+|.|.++.|.+.++.+-.+=+..+.+.+.+. ...+.|++++....+..+.. ...|+.....
T Consensus 41 ~i~~i~~~-~E~~A~~~A~g~~r~~~~v~~~~~gpG~~n~~~~l~~a-~~~~~P~v~i~g~~~~~~~~~~~~~~~~~~~~ 118 (160)
T cd07034 41 GGVVVQAE-SEHAAAEAAIGASAAGARAMTATSGPGLNLMAEALYLA-AGAELPLVIVVAQRPGPSTGLPKPDQSDLMAA 118 (160)
T ss_pred CcEEEEeC-CHHHHHHHHHHHHhhCCcEEEeeCcchHHHHHHHHHHH-HhCCCCEEEEEeeCCCCCCCCCCcCcHHHHHH
Confidence 46788876 99999999999999987744555666566777776543 34679999987544432221 1223333343
Q ss_pred HHHhcCCCCEEEecCCHHHHHHHHHHHHhC---CCCcEEEEec
Q 006251 584 TFMSCLPNMVVMAPSDEAELMHMVATAAVI---DDRPSCFRFP 623 (654)
Q Consensus 584 a~~r~iPnl~V~~PsD~~E~~~ll~~al~~---~~~P~~ir~~ 623 (654)
.+++. -..++.+.++.|+..+++.|+.. .++|+++++.
T Consensus 119 ~~~~~--~~~~~~~~~~~~~~~~~~~A~~~a~~~~~Pv~l~~~ 159 (160)
T cd07034 119 RYGGH--PWPVLAPSSVQEAFDLALEAFELAEKYRLPVIVLSD 159 (160)
T ss_pred HhCCC--CEEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 33322 56778899999988877766542 3479998764
No 162
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=96.47 E-value=0.01 Score=73.26 Aligned_cols=61 Identities=18% Similarity=0.124 Sum_probs=49.3
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCC
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQV 316 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~ 316 (654)
+.-+||.+++.++|+|-.. .+++||+++|||.+.. +-.-|+..|.+.+.|++++|-+|+..
T Consensus 479 ~~~~MG~eg~~~~G~a~f~----~~~hv~a~iGDgTffH-SG~~al~~AV~~~~nit~~IL~N~~v 539 (1165)
T PRK09193 479 TFTQMGGEGVPWIGQAPFT----DEKHVFQNLGDGTYFH-SGLLAIRAAVAAGVNITYKILYNDAV 539 (1165)
T ss_pred eeeccCCcchhhceecccc----CCCcEEEEeccccchh-cCHHHHHHHHhcCCCeEEEEEeCCcc
Confidence 3456788888888988752 3578999999999974 34468999999999999999999853
No 163
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=96.18 E-value=0.0099 Score=61.20 Aligned_cols=114 Identities=20% Similarity=0.134 Sum_probs=73.1
Q ss_pred cccchhHHHHHHHHHHHHhcCCeeEEeehHHHHHhHHHHHHHhhhcCCCCEEEEE-ecCCccCCCCCCCCChhhHHHHhc
Q 006251 510 FDVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAM-DRAGLVGADGPTHCGAFDVTFMSC 588 (654)
Q Consensus 510 id~GIaE~~mvg~AaGlA~~G~~Pi~~tfa~Fl~ra~dQI~~~~a~~~lpV~~v~-~~~G~~g~dG~tHq~~edla~~r~ 588 (654)
+--.-+|...++++.|.++.|.|.++.+=+.=+..+.|.| ..++..++|++++. .++| .+..+++|+.-.|+-+.+
T Consensus 39 ~~~~E~E~~A~~~~~GAs~aG~ra~t~ts~~Gl~lm~e~l-~~a~~~~~P~V~~~~~R~g-~~~g~~~~~~q~D~~~~~- 115 (230)
T PF01855_consen 39 VVQAESEHAAMEAAIGASAAGARAMTATSGPGLNLMAEPL-YWAAGTELPIVIVVVQRAG-PSPGLSTQPEQDDLMAAR- 115 (230)
T ss_dssp EEE-SSHHHHHHHHHHHHHTT--EEEEEECCHHHHHCCCH-HHHHHTT--EEEEEEEB----SSSB--SB-SHHHHHTT-
T ss_pred EEEecchHHHHHHHHHHHhcCCceEEeecCCcccccHhHH-HHHHHcCCCEEEEEEECCC-CCCCCcCcCChhHHHHHH-
Confidence 3445889999999999999999999988433333445554 45678899977765 4454 333477888888975544
Q ss_pred CCCCEEEecCCHHHHHHHHHHHHh---CCCCcEEEEecCCC
Q 006251 589 LPNMVVMAPSDEAELMHMVATAAV---IDDRPSCFRFPRGN 626 (654)
Q Consensus 589 iPnl~V~~PsD~~E~~~ll~~al~---~~~~P~~ir~~r~~ 626 (654)
--++.|+.|+|+.|+..+...|+. +...|++++.....
T Consensus 116 d~~~~vl~p~~~QEa~d~~~~A~~lAe~~~~PViv~~Dg~~ 156 (230)
T PF01855_consen 116 DSGWIVLAPSSPQEAYDMTLIAFNLAEKYQTPVIVLFDGFL 156 (230)
T ss_dssp TSS-EEEE--SHHHHHHHHHHHHHHHHHHTSEEEEEEECCC
T ss_pred hcCeEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechhh
Confidence 667889999999999998776643 34579999886544
No 164
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=96.10 E-value=0.051 Score=51.67 Aligned_cols=115 Identities=17% Similarity=0.160 Sum_probs=77.3
Q ss_pred CCccccchhHHHHHHHHHHHHhcC-CeeEEee-hHHHHHhHHHHHHHhhhcCCCCEEEEEecCCccCCCCCCCCChhhHH
Q 006251 507 DRCFDVGIAEQHAVTFAAGLASEG-VKPFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVT 584 (654)
Q Consensus 507 ~R~id~GIaE~~mvg~AaGlA~~G-~~Pi~~t-fa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~~g~dG~tHq~~edla 584 (654)
-|++.+ ..|+.++.+|.|+++.+ ..+++.+ ..+=+..++..+ ..+...+.|++++...-+.....-.+||......
T Consensus 35 ~~~i~~-~~E~~A~~~A~g~~~~~~~~~v~~~~~gpG~~n~~~~l-~~A~~~~~Pll~i~~~~~~~~~~~~~~q~~d~~~ 112 (155)
T cd07035 35 IRYILV-RHEQGAVGMADGYARATGKPGVVLVTSGPGLTNAVTGL-ANAYLDSIPLLVITGQRPTAGEGRGAFQEIDQVA 112 (155)
T ss_pred CEEEEe-CCHHHHHHHHHHHHHHHCCCEEEEEcCCCcHHHHHHHH-HHHHhhCCCEEEEeCCCccccccCCcccccCHHH
Confidence 466666 79999999999999985 4444443 333344555654 3455669999998755443332233466666767
Q ss_pred HHhcCCCCEEEecCCHHHHHHHHHHHHhC----CCCcEEEEecC
Q 006251 585 FMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPR 624 (654)
Q Consensus 585 ~~r~iPnl~V~~PsD~~E~~~ll~~al~~----~~~P~~ir~~r 624 (654)
+++.+-.. .+...++.++...+..|++. ..+|++|.+|+
T Consensus 113 ~~~~~~~~-~~~i~~~~~~~~~i~~A~~~a~~~~~gPv~l~ip~ 155 (155)
T cd07035 113 LFRPITKW-AYRVTSPEEIPEALRRAFRIALSGRPGPVALDLPK 155 (155)
T ss_pred HHHHHhce-EEEcCCHHHHHHHHHHHHHHhcCCCCCcEEEEecC
Confidence 88888644 67777888888877776653 25799997763
No 165
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=96.05 E-value=0.018 Score=71.81 Aligned_cols=115 Identities=20% Similarity=0.301 Sum_probs=79.7
Q ss_pred CeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCCCcccccccCCCCCchhhhhHHHHHhhhchhHHHHHHHHHH
Q 006251 276 NNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKS 355 (654)
Q Consensus 276 ~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~vgals~~l~~~~~~~~~~~~r~~~k~ 355 (654)
..||++.|||..- +.-+..+..+...+.|+++||.||..++.+..|.+ .+.+.|+.++.-
T Consensus 952 ~sv~~~~GDG~~~-diG~~~l~~~~~r~~~v~~i~~dne~Y~nTggQ~S-~~tp~g~~t~~~------------------ 1011 (1165)
T TIGR02176 952 KSVWIIGGDGWAY-DIGYGGLDHVLASGKDVNVLVMDTEVYSNTGGQSS-KATPTGAIAKFA------------------ 1011 (1165)
T ss_pred ceeEEEecchhhh-ccCccchHHHHHcCCCeEEEEECCcccccCCCcCC-CCCCCcCccccC------------------
Confidence 4799999999654 14456788999999999999999986555444433 334455542110
Q ss_pred HHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecC-CCCHHHHHHHHHHhHhCCCCCCEEEEEEee
Q 006251 356 ITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVD-GHNVEDLVTIFQRVKEMPAPGPVLIHVVTE 429 (654)
Q Consensus 356 ~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vD-GhDi~~L~~al~~ak~~~~~gP~lI~v~T~ 429 (654)
..|... ...+-..++.++|..|+..+. |.++.++.+++++|.+. +||.+|++.+.
T Consensus 1012 ---~~g~~~--------------~kkd~~~~a~~~g~~yvA~~~~~~~~~~~~~~~~~A~~~--~G~s~i~~~~p 1067 (1165)
T TIGR02176 1012 ---AAGKRT--------------SKKDLGMMAMTYGYVYVAQVSMGANMQQTLKAFREAEAY--DGPSIVIAYSP 1067 (1165)
T ss_pred ---CCCCCC--------------CCcCHHHHHHHCCCCEEEEEecccCHHHHHHHHHHHHcC--CCCEEEEEECC
Confidence 001000 011223457789999988876 67999999999999876 79999999886
No 166
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=96.03 E-value=0.05 Score=60.01 Aligned_cols=116 Identities=14% Similarity=0.117 Sum_probs=82.5
Q ss_pred CCccccchhHHHHHHHHHHHHhcCCeeEEeehHHHHHhHHHHHHHhhhcCCCCEEEEE-ecCCccCCCCCCCCChhhHHH
Q 006251 507 DRCFDVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAM-DRAGLVGADGPTHCGAFDVTF 585 (654)
Q Consensus 507 ~R~id~GIaE~~mvg~AaGlA~~G~~Pi~~tfa~Fl~ra~dQI~~~~a~~~lpV~~v~-~~~G~~g~dG~tHq~~edla~ 585 (654)
..|++.- +|...+++|.|.|..|.|.++.|-+.=+....+++- .++..++|++++. .++|- +..-||++.-.|+-.
T Consensus 49 ~~~vq~E-~E~aA~~~a~GAs~aG~Ra~TaTSg~Gl~lm~E~~~-~a~~~e~P~Viv~~~R~gp-~tg~p~~~~q~D~~~ 125 (376)
T PRK08659 49 GVFIQME-DEIASMAAVIGASWAGAKAMTATSGPGFSLMQENIG-YAAMTETPCVIVNVQRGGP-STGQPTKPAQGDMMQ 125 (376)
T ss_pred CEEEEeC-chHHHHHHHHhHHhhCCCeEeecCCCcHHHHHHHHH-HHHHcCCCEEEEEeecCCC-CCCCCCCcCcHHHHH
Confidence 4677777 999999999999999999999985444445567753 3445689977765 45553 222366666556544
Q ss_pred Hhc----CCCCEEEecCCHHHHHHHHHHHHhC---CCCcEEEEecCC
Q 006251 586 MSC----LPNMVVMAPSDEAELMHMVATAAVI---DDRPSCFRFPRG 625 (654)
Q Consensus 586 ~r~----iPnl~V~~PsD~~E~~~ll~~al~~---~~~P~~ir~~r~ 625 (654)
.+. --+..|+.|+|.+|+..+...|+.. ..-|++++....
T Consensus 126 ~~~~~hgd~~~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~~ 172 (376)
T PRK08659 126 ARWGTHGDHPIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADEV 172 (376)
T ss_pred HhcccCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechH
Confidence 441 1236799999999999988777653 446999988764
No 167
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=96.02 E-value=0.026 Score=69.65 Aligned_cols=59 Identities=17% Similarity=0.123 Sum_probs=47.0
Q ss_pred cccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCC
Q 006251 252 AGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQ 315 (654)
Q Consensus 252 ~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~ 315 (654)
.-+||.+++.++|++-.. .+.+||+++|||.+.. +-.-|+.+|.+.+.|++++|-+|+.
T Consensus 494 ~~~MGgeg~~~~G~a~f~----~~~hv~aniGDgTffH-SG~~alr~AV~~~~nit~kIL~N~a 552 (1186)
T PRK13029 494 FSQMGGEGVAWIGQMPFS----RRRHVFQNLGDGTYFH-SGLLAIRQAIAAGVNITYKILYNDA 552 (1186)
T ss_pred eeccCcchhhheeecccC----CCCCEEEEeccccchh-cCHHHHHHHHhcCCCEEEEEEeCcc
Confidence 345677777788887652 3578999999999974 3446899999999999999999985
No 168
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=95.39 E-value=0.11 Score=57.22 Aligned_cols=108 Identities=19% Similarity=0.163 Sum_probs=78.9
Q ss_pred hHHHHHHHHHHHHhcCCeeEEeehHHHHHhHHHHHHHhhhcCCCCEEEEE-ecCCccCCCCCCCCChhhHHHHh-----c
Q 006251 515 AEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAM-DRAGLVGADGPTHCGAFDVTFMS-----C 588 (654)
Q Consensus 515 aE~~mvg~AaGlA~~G~~Pi~~tfa~Fl~ra~dQI~~~~a~~~lpV~~v~-~~~G~~g~dG~tHq~~edla~~r-----~ 588 (654)
+|...+++|.|.+..|.|.++.|-..=+....+++ -.++...+|++++. .++|.. ..-||...-.|+-..+ .
T Consensus 55 ~E~aA~~~a~GAs~aG~Ra~taTSg~G~~lm~E~~-~~a~~~e~P~V~~~~~R~Gps-tG~p~~~~q~D~~~~~~~~hgd 132 (375)
T PRK09627 55 DEISGISVALGASMSGVKSMTASSGPGISLKAEQI-GLGFIAEIPLVIVNVMRGGPS-TGLPTRVAQGDVNQAKNPTHGD 132 (375)
T ss_pred CHHHHHHHHHHHHhhCCCEEeecCCchHHHHhhHH-HHHHhccCCEEEEEeccCCCc-CCCCCccchHHHHHHhcCCCCC
Confidence 99999999999999999999998443333456765 34567889987754 556642 2236666656765555 4
Q ss_pred CCCCEEEecCCHHHHHHHHHHHHhC---CCCcEEEEecCC
Q 006251 589 LPNMVVMAPSDEAELMHMVATAAVI---DDRPSCFRFPRG 625 (654)
Q Consensus 589 iPnl~V~~PsD~~E~~~ll~~al~~---~~~P~~ir~~r~ 625 (654)
.|.+ |++|+|++|+..+...|+.. ..-|++++....
T Consensus 133 ~~~i-vl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~~ 171 (375)
T PRK09627 133 FKSI-ALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDET 171 (375)
T ss_pred cCcE-EEeCCCHHHHHHHHHHHHHHHHHHcCceEEecchH
Confidence 5665 99999999999988776653 456999987763
No 169
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=95.19 E-value=0.11 Score=57.63 Aligned_cols=107 Identities=16% Similarity=0.084 Sum_probs=81.5
Q ss_pred hhHHHHHHHHHHHHhcCCeeEEeehHHHHHhHHHHHHHhhhcCCCCEEEEE-ecCCccCCCCCCCCChhhHHHHhcCCCC
Q 006251 514 IAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAM-DRAGLVGADGPTHCGAFDVTFMSCLPNM 592 (654)
Q Consensus 514 IaE~~mvg~AaGlA~~G~~Pi~~tfa~Fl~ra~dQI~~~~a~~~lpV~~v~-~~~G~~g~dG~tHq~~edla~~r~iPnl 592 (654)
=+|...+++|.|.|..|.|.++.|-+.=+..+.|.+ ..++...+|++++. .++|- + .+++|+.-.|+-.. .--++
T Consensus 56 E~E~aA~~~aiGAs~aGaRa~TaTSg~Gl~lm~E~l-~~aa~~~lPiVi~~~~R~~p-~-~~~~~~~q~D~~~~-~d~g~ 131 (390)
T PRK08366 56 ESEHSAMAACIGASAAGARAFTATSAQGLALMHEML-HWAAGARLPIVMVDVNRAMA-P-PWSVWDDQTDSLAQ-RDTGW 131 (390)
T ss_pred CCHHHHHHHHHHHHhhCCCeEeeeCcccHHHHhhHH-HHHHhcCCCEEEEEeccCCC-C-CCCCcchhhHHHHH-hhcCE
Confidence 489999999999999999999999554444667775 55678899988664 45553 2 46887666686444 44588
Q ss_pred EEEecCCHHHHHHHHHHHHhC---CCCcEEEEecC
Q 006251 593 VVMAPSDEAELMHMVATAAVI---DDRPSCFRFPR 624 (654)
Q Consensus 593 ~V~~PsD~~E~~~ll~~al~~---~~~P~~ir~~r 624 (654)
.+++|+|.+|+..+...|+.. -.-|++++...
T Consensus 132 i~~~~~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg 166 (390)
T PRK08366 132 MQFYAENNQEVYDGVLMAFKVAETVNLPAMVVESA 166 (390)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEecC
Confidence 999999999999987776643 45699999854
No 170
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=94.91 E-value=0.12 Score=59.91 Aligned_cols=115 Identities=17% Similarity=0.143 Sum_probs=83.0
Q ss_pred ccccchhHHHHHHHHHHHHhcCCeeEEeehHHHHHhHHHHHHHhhhcCCCCEEEEE-ecCCccCCCCCCCCChhhHHHHh
Q 006251 509 CFDVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAM-DRAGLVGADGPTHCGAFDVTFMS 587 (654)
Q Consensus 509 ~id~GIaE~~mvg~AaGlA~~G~~Pi~~tfa~Fl~ra~dQI~~~~a~~~lpV~~v~-~~~G~~g~dG~tHq~~edla~~r 587 (654)
.+--.=+|...+++|.|.++.|.|.++.|-..=+..+.|.+ ..++...+|++++. .++|. ...-+|+..-.|+-+.+
T Consensus 239 ~~~q~E~E~aA~~~a~GAs~aG~Ra~taTSg~Gl~lm~E~l-~~a~~~~~P~Vi~~~~R~gp-stg~~t~~eq~D~~~~~ 316 (562)
T TIGR03710 239 VVVQAEDEIAAINMAIGASYAGARAMTATSGPGFALMTEAL-GLAGMTETPLVIVDVQRGGP-STGLPTKTEQSDLLFAL 316 (562)
T ss_pred EEEeeccHHHHHHHHHhHHhcCCceeecCCCCChhHhHHHH-hHHHhccCCEEEEEcccCCC-CCCCCCCccHHHHHHHh
Confidence 33344799999999999999999999998443333556776 55666899977765 55553 22346777777864443
Q ss_pred cCC----CCEEEecCCHHHHHHHHHHHHhC---CCCcEEEEecCC
Q 006251 588 CLP----NMVVMAPSDEAELMHMVATAAVI---DDRPSCFRFPRG 625 (654)
Q Consensus 588 ~iP----nl~V~~PsD~~E~~~ll~~al~~---~~~P~~ir~~r~ 625 (654)
.-- ++.|++|+|++|+..+...|+.. ..-|++++....
T Consensus 317 ~~~hgd~~~ivl~p~~~qEa~d~~~~Af~lAe~~~~PViv~~D~~ 361 (562)
T TIGR03710 317 YGGHGEFPRIVLAPGSPEECFYLAIEAFNLAEKYQTPVIVLSDQY 361 (562)
T ss_pred cCCCCCcCceEEcCCCHHHHHHHHHHHHHHHHHhcCCEEEEechH
Confidence 221 38999999999999987776653 456999987655
No 171
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=94.53 E-value=0.26 Score=55.04 Aligned_cols=114 Identities=16% Similarity=0.090 Sum_probs=83.8
Q ss_pred CccccchhHHHHHHHHHHHHhcCCeeEEeehHHHHHhHHHHHHHhhhcCCCCEEEEEecCCccCCCCCCCCChhhHHHHh
Q 006251 508 RCFDVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMS 587 (654)
Q Consensus 508 R~id~GIaE~~mvg~AaGlA~~G~~Pi~~tfa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~~g~dG~tHq~~edla~~r 587 (654)
.|+.+- +|...++++.|.+..|.|.++.|-+.=+..+.|.+ ..++...+|++++...-|+.. .-++|..-.|+-..
T Consensus 58 ~~vq~E-~E~~A~~~~~GAs~aGaRa~TaTS~~Gl~lm~E~l-~~aa~~~~P~V~~~~~R~~~~-~~~i~~d~~D~~~~- 133 (407)
T PRK09622 58 EFVMVE-SEHAAMSACVGAAAAGGRVATATSSQGLALMVEVL-YQASGMRLPIVLNLVNRALAA-PLNVNGDHSDMYLS- 133 (407)
T ss_pred EEEeec-cHHHHHHHHHHHHhhCcCEEeecCcchHHHHhhHH-HHHHHhhCCEEEEEeccccCC-CcCCCchHHHHHHH-
Confidence 344433 99999999999999999999998554444566775 456789999666653333222 25677777776444
Q ss_pred cCCCCEEEecCCHHHHHHHHHHHHhC--C---CCcEEEEecCC
Q 006251 588 CLPNMVVMAPSDEAELMHMVATAAVI--D---DRPSCFRFPRG 625 (654)
Q Consensus 588 ~iPnl~V~~PsD~~E~~~ll~~al~~--~---~~P~~ir~~r~ 625 (654)
.-.++.|++|+|++|+..+...|+.. + .-|++++....
T Consensus 134 r~~g~ivl~p~s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~ 176 (407)
T PRK09622 134 RDSGWISLCTCNPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGF 176 (407)
T ss_pred hcCCeEEEeCCCHHHHHHHHHHHHHHHHHhccCCCEEEEechh
Confidence 46779999999999999988877654 2 57999987665
No 172
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=94.46 E-value=0.36 Score=47.01 Aligned_cols=125 Identities=14% Similarity=0.133 Sum_probs=77.6
Q ss_pred hhHHHhCCCCccccchhHHHHHHHHHHHHhc-CCeeEEee-hHHHHHhHHHHHHHhhhcCCCCEEEEEecCCccC-CCCC
Q 006251 499 NYFQKRFPDRCFDVGIAEQHAVTFAAGLASE-GVKPFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVG-ADGP 575 (654)
Q Consensus 499 ~~f~~~fp~R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~t-fa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~~g-~dG~ 575 (654)
+.+.+...-|++.+ -.|++++.+|.|+++. |...+|.+ ..+=+..+..-|. .+...+.||+++....+..+ ..|.
T Consensus 32 ~al~~~~~i~~i~~-~~E~~A~~~A~g~ar~~g~~~v~~~~~GpG~~n~~~~l~-~A~~~~~Pvl~i~g~~~~~~~~~~~ 109 (172)
T PF02776_consen 32 DALEKSPGIRFIPV-RHEQGAAFMADGYARATGRPGVVIVTSGPGATNALTGLA-NAYADRIPVLVITGQRPSAGEGRGA 109 (172)
T ss_dssp HHHHHTTTSEEEE--SSHHHHHHHHHHHHHHHSSEEEEEEETTHHHHTTHHHHH-HHHHTT-EEEEEEEESSGGGTTTTS
T ss_pred HHhhhhcceeeecc-cCcchhHHHHHHHHHhhccceEEEeecccchHHHHHHHh-hcccceeeEEEEecccchhhhcccc
Confidence 33433323567775 8999999999999987 44445544 3221234444432 34456899999876555432 2577
Q ss_pred CCCChhhHHHHhcCCCCEEEecCCHHHHHH----HHHHHHhCCCCcEEEEecCCC
Q 006251 576 THCGAFDVTFMSCLPNMVVMAPSDEAELMH----MVATAAVIDDRPSCFRFPRGN 626 (654)
Q Consensus 576 tHq~~edla~~r~iPnl~V~~PsD~~E~~~----ll~~al~~~~~P~~ir~~r~~ 626 (654)
.|+......+++.+-.. .+.+.++.++.. +++.+.....+|++|-+|+..
T Consensus 110 ~q~~~d~~~~~~~~~k~-~~~v~~~~~~~~~~~~A~~~a~~~~~gPv~l~ip~dv 163 (172)
T PF02776_consen 110 FQQEIDQQSLFRPVTKW-SYRVTSPDDLPEALDRAFRAATSGRPGPVYLEIPQDV 163 (172)
T ss_dssp TTSSTHHHHHHGGGSSE-EEEECSGGGHHHHHHHHHHHHHHCSTSEEEEEEEHHH
T ss_pred cccchhhcchhccccch-hcccCCHHHHHHHHHHHHHHhccCCCccEEEEcChhH
Confidence 77677777888877643 455555555444 455553456899999998753
No 173
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=93.43 E-value=1.1 Score=43.40 Aligned_cols=110 Identities=18% Similarity=0.244 Sum_probs=63.5
Q ss_pred chhHHHHHHHHHHHHhcCCeeEEeehHHHHHhHHHHHHHhhh-cCCCCEEEEEecCCccCCCCCCCC--ChhhHHHHhcC
Q 006251 513 GIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVD-LQKLPVRFAMDRAGLVGADGPTHC--GAFDVTFMSCL 589 (654)
Q Consensus 513 GIaE~~mvg~AaGlA~~G~~Pi~~tfa~Fl~ra~dQI~~~~a-~~~lpV~~v~~~~G~~g~dG~tHq--~~edla~~r~i 589 (654)
.-+|...+++|+|.++.|.+|.+.+-.+=+..+..-+ .++. ..+.||+++...-|-.|++-+.|. ....-..+..+
T Consensus 40 ~~~ee~aa~~aAg~~~~~~~~~v~~~~sG~gn~~~~l-~~a~~~~~~Pvl~i~g~rg~~~~~~~~q~~~g~~~~~~l~~~ 118 (157)
T TIGR03845 40 LTREEEGVGICAGAYLAGKKPAILMQSSGLGNSINAL-ASLNKTYGIPLPILASWRGVYKEKIPAQIPMGRATPKLLDTL 118 (157)
T ss_pred cCChHHHHHHHHHHHHhcCCcEEEEeCCcHHHHHHHH-HHHHHcCCCCEEEEEeccCCCCCCCccccchhhhhHHHHHHc
Confidence 5789999999999999988888776222233444443 3344 578999999855554333222221 11111122222
Q ss_pred CCCEEEecCCHHHHHHHHHHHHh---CCCCcEEEEecCC
Q 006251 590 PNMVVMAPSDEAELMHMVATAAV---IDDRPSCFRFPRG 625 (654)
Q Consensus 590 Pnl~V~~PsD~~E~~~ll~~al~---~~~~P~~ir~~r~ 625 (654)
++......+++++ ..++.|++ ..++|++|..++.
T Consensus 119 -~i~~~~i~~~e~~-~~i~~A~~~a~~~~gPv~il~~~~ 155 (157)
T TIGR03845 119 -GIPYTIPREPEEA-KLIEKAISDAYENSRPVAALLDPK 155 (157)
T ss_pred -CCCeEEeCCHHHH-HHHHHHHHHHHhCCCCEEEEEeCC
Confidence 3335555566666 55554432 3459999998764
No 174
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=93.12 E-value=0.35 Score=56.55 Aligned_cols=113 Identities=19% Similarity=0.198 Sum_probs=81.5
Q ss_pred CccccchhHHHHHHHHHHHHhcCCeeEEeehHHHHHhHHHHHHHhhh--cCCCCEEEEEecCCccCCCCCCCCChhhHHH
Q 006251 508 RCFDVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVD--LQKLPVRFAMDRAGLVGADGPTHCGAFDVTF 585 (654)
Q Consensus 508 R~id~GIaE~~mvg~AaGlA~~G~~Pi~~tfa~Fl~ra~dQI~~~~a--~~~lpV~~v~~~~G~~g~dG~tHq~~edla~ 585 (654)
-++.-...|...+.+|.|.+..|.|.++.|=..=+..+.|++.. ++ -...|++++.... .| -++++..-.|+-+
T Consensus 47 ~~~~~~~~E~~a~~~~~GAs~aG~ra~t~ts~~Gl~~~~e~l~~-~~~~g~~~~iV~~~~~~--~g-p~~~~~~q~d~~~ 122 (595)
T TIGR03336 47 VYFEWSVNEKVAVEVAAGAAWSGLRAFCTMKHVGLNVAADPLMT-LAYTGVKGGLVVVVADD--PS-MHSSQNEQDTRHY 122 (595)
T ss_pred EEEEECcCHHHHHHHHHHHHhcCcceEEEccCCchhhhHHHhhh-hhhhcCcCceEEEEccC--CC-CccchhhHhHHHH
Confidence 34455568999999999999999999999954444567788755 44 3467777665322 12 2466666667645
Q ss_pred HhcCCCCEEEecCCHHHHHHHHHHHHhC---CCCcEEEEecCC
Q 006251 586 MSCLPNMVVMAPSDEAELMHMVATAAVI---DDRPSCFRFPRG 625 (654)
Q Consensus 586 ~r~iPnl~V~~PsD~~E~~~ll~~al~~---~~~P~~ir~~r~ 625 (654)
.+. .++.|+.|+|.+|+..+...|+.. ..-|++++....
T Consensus 123 ~~~-~~~~vl~p~~~qE~~d~~~~Af~lae~~~~PV~v~~d~~ 164 (595)
T TIGR03336 123 AKF-AKIPCLEPSTPQEAKDMVKYAFELSEKFGLPVILRPTTR 164 (595)
T ss_pred HHh-cCCeEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEeee
Confidence 444 588899999999999988877653 456999998754
No 175
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=93.11 E-value=0.59 Score=51.99 Aligned_cols=109 Identities=17% Similarity=0.158 Sum_probs=79.4
Q ss_pred hhHHHHHHHHHHHHhcCCeeEEeehHHHHHhHHHHHHHhhhcCCCCEEEEEecCCccCCCCCCCCChhhHHHHhcCCCCE
Q 006251 514 IAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMV 593 (654)
Q Consensus 514 IaE~~mvg~AaGlA~~G~~Pi~~tfa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~~g~dG~tHq~~edla~~r~iPnl~ 593 (654)
=+|+..++++.|.|..|.|.+..|-+.=+..+.|.+ ..++...+|++++...-+ ++.-..+|..--|+-..|. -++.
T Consensus 57 EsE~aA~~~~~GAs~aGaRa~TaTS~~Gl~lm~E~l-~~aag~~lP~V~vv~~R~-~~~p~~i~~d~~D~~~~rd-~g~~ 133 (394)
T PRK08367 57 ESEHSAISACVGASAAGVRTFTATASQGLALMHEVL-FIAAGMRLPIVMAIGNRA-LSAPINIWNDWQDTISQRD-TGWM 133 (394)
T ss_pred CCHHHHHHHHHHHHhhCCCeEeeeccchHHHHhhHH-HHHHHccCCEEEEECCCC-CCCCCCcCcchHHHHhccc-cCeE
Confidence 589999999999999999999998655455667775 567889999888762222 2322355655557544444 3478
Q ss_pred EEecCCHHHHHHHHHHHHhCCC-----CcEEEEecCC
Q 006251 594 VMAPSDEAELMHMVATAAVIDD-----RPSCFRFPRG 625 (654)
Q Consensus 594 V~~PsD~~E~~~ll~~al~~~~-----~P~~ir~~r~ 625 (654)
++.|+|.+|+..+...|+.... -|++++...-
T Consensus 134 ~~~a~~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf 170 (394)
T PRK08367 134 QFYAENNQEALDLILIAFKVAEDERVLLPAMVGFDAF 170 (394)
T ss_pred EEeCCCHHHHHHHHHHHHHHHHHhCcCCCEEEEechh
Confidence 8999999999998887765444 4999988763
No 176
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=92.91 E-value=0.78 Score=44.71 Aligned_cols=115 Identities=16% Similarity=0.060 Sum_probs=72.2
Q ss_pred CCccccchhHHHHHHHHHHHHhc-CCeeEEee-hHHHHHhHHHHHHHhhhcCCCCEEEEEecCCccCCCCCCCCChhhHH
Q 006251 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVT 584 (654)
Q Consensus 507 ~R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~t-fa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~~g~dG~tHq~~edla 584 (654)
=|++.+ -.|++.+.+|-|+|.. |...+|.+ ..+=+..++.-| ..+...+.||+++.........+-.+||..++..
T Consensus 36 i~~v~~-rhE~~A~~mAdgyar~sg~~gv~~~t~GpG~~n~~~gl-~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~ 113 (162)
T cd07037 36 FRLHVR-VDERSAAFFALGLAKASGRPVAVVCTSGTAVANLLPAV-VEAYYSGVPLLVLTADRPPELRGTGANQTIDQVG 113 (162)
T ss_pred ceEEec-cChHHHHHHHHHHHHhhCCCEEEEECCchHHHHHhHHH-HHHHhcCCCEEEEECCCCHHhcCCCCCcccchhh
Confidence 356665 8999999999999997 54444443 555555555443 3455678999998643332222233477677666
Q ss_pred HHhcCCCC--EEEecCC-------HHHHHHHHHHHHhCCCCcEEEEec
Q 006251 585 FMSCLPNM--VVMAPSD-------EAELMHMVATAAVIDDRPSCFRFP 623 (654)
Q Consensus 585 ~~r~iPnl--~V~~PsD-------~~E~~~ll~~al~~~~~P~~ir~~ 623 (654)
+++.+=.. +|-.|.+ +..+..+++.|.....+|++|-+|
T Consensus 114 l~~~vtk~~~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 161 (162)
T cd07037 114 LFGDYVRWSVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNLP 161 (162)
T ss_pred hccceeeEEEecCCcccchhHHHHHHHHHHHHHHHhCCCCCCEEEecc
Confidence 76666542 3345555 455666666665445689998664
No 177
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=92.65 E-value=1.1 Score=43.43 Aligned_cols=116 Identities=13% Similarity=0.060 Sum_probs=67.0
Q ss_pred hCCCCccccch--hHHHHHHHHHHHHhcC-CeeEEee--hHHHHHhHHHHHHHhhhcCCCCEEEEE-ecCCcc--C--CC
Q 006251 504 RFPDRCFDVGI--AEQHAVTFAAGLASEG-VKPFCAI--YSSFLQRGYDQVVHDVDLQKLPVRFAM-DRAGLV--G--AD 573 (654)
Q Consensus 504 ~fp~R~id~GI--aE~~mvg~AaGlA~~G-~~Pi~~t--fa~Fl~ra~dQI~~~~a~~~lpV~~v~-~~~G~~--g--~d 573 (654)
..|.+++..+. +=-..+++|.|.++.. -+|++.+ -..|... ...+ ..++..++|++++. ...|+. . ..
T Consensus 36 ~~p~~~~~~~~~g~mG~~lp~AiGa~la~~~~~vv~i~GDG~f~~~-~~el-~ta~~~~lpv~ivv~NN~~~~~~~~~~~ 113 (172)
T cd02004 36 RKPRHRLDAGTFGTLGVGLGYAIAAALARPDKRVVLVEGDGAFGFS-GMEL-ETAVRYNLPIVVVVGNNGGWYQGLDGQQ 113 (172)
T ss_pred cCCCcEecCCCCCcccchHHHHHHHHHhCCCCeEEEEEcchhhcCC-HHHH-HHHHHcCCCEEEEEEECcccccchhhhh
Confidence 44788887643 1222455666766664 3455554 5667643 2333 45667899977776 334431 0 00
Q ss_pred ----CCCCC----ChhhHHHHhcCCCCEEEecCCHHHHHHHHHHHHhCCCCcEEEEe
Q 006251 574 ----GPTHC----GAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRF 622 (654)
Q Consensus 574 ----G~tHq----~~edla~~r~iPnl~V~~PsD~~E~~~ll~~al~~~~~P~~ir~ 622 (654)
+..+. ...|..-+..-=|+..+.-.+..|+..+++.++. .++|++|-.
T Consensus 114 ~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~~~el~~al~~a~~-~~~p~liev 169 (172)
T cd02004 114 LSYGLGLPVTTLLPDTRYDLVAEAFGGKGELVTTPEELKPALKRALA-SGKPALINV 169 (172)
T ss_pred hhccCCCceeccCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHH-cCCCEEEEE
Confidence 00000 1223333333336777777899999999999975 578998853
No 178
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=92.09 E-value=3.6 Score=39.64 Aligned_cols=144 Identities=13% Similarity=0.121 Sum_probs=79.4
Q ss_pred HHHHHHHHHHhhCCcEEEEecCccCCCChhhH-HHhCCCCccccchhHHHHHHHHHHHHhcCCeeEEee--hHHHHHhHH
Q 006251 470 YFAESLIKEAETDDKIVAIHAAMGGGTGLNYF-QKRFPDRCFDVGIAEQHAVTFAAGLASEGVKPFCAI--YSSFLQRGY 546 (654)
Q Consensus 470 a~~~aL~~~~~~d~~vvvl~aDlg~s~~l~~f-~~~fp~R~id~GIaE~~mvg~AaGlA~~G~~Pi~~t--fa~Fl~ra~ 546 (654)
.+.+.|.+.+ + +.+++. |.|.. ...-+ ....|.+++..|---.+ ++.|.|+++.-.+|++.+ -..|++-.-
T Consensus 3 ~~~~~l~~~l-~-d~~vv~--d~G~~-~~~~~~~~~~~~~~~~~gsmG~~-lp~AiGa~~a~~~~Vv~i~GDG~f~m~~~ 76 (157)
T cd02001 3 AAIAEIIEAS-G-DTPIVS--TTGYA-SRELYDVQDRDGHFYMLGSMGLA-GSIGLGLALGLSRKVIVVDGDGSLLMNPG 76 (157)
T ss_pred HHHHHHHHhC-C-CCEEEe--CCCHh-HHHHHHhhcCCCCEEeecchhhH-HHHHHHHHhcCCCcEEEEECchHHHhccc
Confidence 3455566666 3 334443 33422 22223 23457888763332222 236666665533667666 677764432
Q ss_pred HHHHHhhhcC-CCCEEEEE-ecCCc--cCCCCCCCCChhhHHHHhcCCCCEEEecCCHHHHHHHHHHHHhCCCCcEEEEe
Q 006251 547 DQVVHDVDLQ-KLPVRFAM-DRAGL--VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRF 622 (654)
Q Consensus 547 dQI~~~~a~~-~lpV~~v~-~~~G~--~g~dG~tHq~~edla~~r~iPnl~V~~PsD~~E~~~ll~~al~~~~~P~~ir~ 622 (654)
+ + ..++.. ++|++++. ...++ .+ .-.++....|.+-+..-=|..-+...++.|+...++.++. .++|++|-.
T Consensus 77 e-l-~t~~~~~~~~i~~vV~nN~~~g~~~-~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~-~~gp~vi~v 152 (157)
T cd02001 77 V-L-LTAGEFTPLNLILVVLDNRAYGSTG-GQPTPSSNVNLEAWAAACGYLVLSAPLLGGLGSEFAGLLA-TTGPTLLHA 152 (157)
T ss_pred H-H-HHHHHhcCCCEEEEEEeCccccccC-CcCCCCCCCCHHHHHHHCCCceEEcCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 2 2 223334 58987776 44443 12 1123332334444444446777777999999999999975 679998855
Q ss_pred c
Q 006251 623 P 623 (654)
Q Consensus 623 ~ 623 (654)
.
T Consensus 153 ~ 153 (157)
T cd02001 153 P 153 (157)
T ss_pred E
Confidence 3
No 179
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=91.85 E-value=3.2 Score=40.56 Aligned_cols=147 Identities=17% Similarity=0.060 Sum_probs=80.1
Q ss_pred HHHHHHHHHhhCCcEEEEecCccCCCC--hhhHHHhCCCCccccch-hHH-HHHHHHHHHHhcC-CeeEEee--hHHHHH
Q 006251 471 FAESLIKEAETDDKIVAIHAAMGGGTG--LNYFQKRFPDRCFDVGI-AEQ-HAVTFAAGLASEG-VKPFCAI--YSSFLQ 543 (654)
Q Consensus 471 ~~~aL~~~~~~d~~vvvl~aDlg~s~~--l~~f~~~fp~R~id~GI-aE~-~mvg~AaGlA~~G-~~Pi~~t--fa~Fl~ 543 (654)
+.++|.+.+.+| . ++..|.|.... ...+.-+.|.+++..+. .=. ..++.|.|.++.. -++++.+ -..|++
T Consensus 7 ~~~~l~~~~~~~--~-ii~~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~~~~aiGa~~a~~~~~vv~i~GDG~f~~ 83 (178)
T cd02014 7 VAAELNKRAPDD--A-IFTIDVGNVTVWAARHLRMNGKQRFILSGLLATMGNGLPGAIAAKLAYPDRQVIALSGDGGFAM 83 (178)
T ss_pred HHHHHHhHCCCC--e-EEEEcCcHHHHHHHHhcccCCCCcEEcCCCCchhhhHHHHHHHHHHhCCCCcEEEEEcchHHHh
Confidence 444455555432 2 33334443221 12333445777776543 221 1445566665543 2344444 788875
Q ss_pred hHHHHHHHhhhcCCCCEEEEEec-CCcc--------CCCCCCCC--ChhhHHHHhcCCCCEEEecCCHHHHHHHHHHHHh
Q 006251 544 RGYDQVVHDVDLQKLPVRFAMDR-AGLV--------GADGPTHC--GAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAV 612 (654)
Q Consensus 544 ra~dQI~~~~a~~~lpV~~v~~~-~G~~--------g~dG~tHq--~~edla~~r~iPnl~V~~PsD~~E~~~ll~~al~ 612 (654)
...+ + ..+...++|++++.-. .|+. ..+...+. ...|+.-+..--|++.+...++.|++..++.+++
T Consensus 84 ~~~e-l-~t~~~~~lp~~~iv~NN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~~~el~~~l~~a~~ 161 (178)
T cd02014 84 LMGD-L-ITAVKYNLPVIVVVFNNSDLGFIKWEQEVMGQPEFGVDLPNPDFAKIAEAMGIKGIRVEDPDELEAALDEALA 161 (178)
T ss_pred hHHH-H-HHHHHhCCCcEEEEEECCchhHHHHHHHHhcCCceeccCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHh
Confidence 5433 3 3466778998777644 3321 00111111 1234443344348888899999999999999975
Q ss_pred CCCCcEEEEec
Q 006251 613 IDDRPSCFRFP 623 (654)
Q Consensus 613 ~~~~P~~ir~~ 623 (654)
.++|++|-..
T Consensus 162 -~~~p~liev~ 171 (178)
T cd02014 162 -ADGPVVIDVV 171 (178)
T ss_pred -CCCCEEEEEE
Confidence 6799988654
No 180
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=91.27 E-value=5.3 Score=41.27 Aligned_cols=117 Identities=13% Similarity=0.154 Sum_probs=63.7
Q ss_pred CCCCccccchhHHHHHHHHHHHHhc---C-------CeeEEee--hHHHHHhHHHHHHHhhhcCCCCEEEEEecCCccCC
Q 006251 505 FPDRCFDVGIAEQHAVTFAAGLASE---G-------VKPFCAI--YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGA 572 (654)
Q Consensus 505 fp~R~id~GIaE~~mvg~AaGlA~~---G-------~~Pi~~t--fa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~~g~ 572 (654)
+|.++++..+.-++.+|.+...|+. . -++++.+ -..|+...+..+.+. ...++||+++.-..+..|.
T Consensus 51 ~~~~~~~~~~~~~g~mG~GlpaAiGA~~a~~~~~~p~~~Vv~i~GDG~~~~~g~~~l~ta-~~~~l~i~ivVlNN~~yg~ 129 (237)
T cd02018 51 WAVPWVNSLFEDANAVASGLKRGLKARFPKDRELDKKKDVVVIGGDGATYDIGFGALSHS-LFRGEDITVIVLDNEVYSN 129 (237)
T ss_pred cCCCeeeccccCHHHHHHHHHHHHHhhcccccccCCCCcEEEEeCchHHHhccHHHHHHH-HHcCCCeEEEEECCccccC
Confidence 3456666654444555555444432 1 2456665 555554444444443 3478998887644332211
Q ss_pred CCCCCC--------------C----hhhHH-HHhcCCCCEE---EecCCHHHHHHHHHHHHhCCCCcEEEEec
Q 006251 573 DGPTHC--------------G----AFDVT-FMSCLPNMVV---MAPSDEAELMHMVATAAVIDDRPSCFRFP 623 (654)
Q Consensus 573 dG~tHq--------------~----~edla-~~r~iPnl~V---~~PsD~~E~~~ll~~al~~~~~P~~ir~~ 623 (654)
-+.+++ . ..|++ +.+++ |..- +.+.++.|++.+++.++++.++|++|-..
T Consensus 130 ~~~q~~~~~~~g~~~~~~~~~~~~~~~D~~~iA~a~-G~~~~~~~~v~~~~~l~~al~~al~~~~GP~lI~v~ 201 (237)
T cd02018 130 TGGQRSGATPLGADSKMAPAGKKEDKKDLVLIAATH-GCVYVARLSPALKKHFLKVVKEAISRTDGPTFIHAY 201 (237)
T ss_pred CCCCCCCCCcCCCcccccCCCCcCCCCCHHHHHHHC-CCCEEEEEccCCHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 111111 0 11222 23333 4444 45999999999999997436889988654
No 181
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=91.26 E-value=3.9 Score=43.51 Aligned_cols=150 Identities=9% Similarity=0.088 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEecCccCCCChhhHHHhCCCCccccchhHHHHHHHHHHHHhc--CCeeEEee-hHHHHH
Q 006251 467 YTQYFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLASE--GVKPFCAI-YSSFLQ 543 (654)
Q Consensus 467 ~~~a~~~aL~~~~~~d~~vvvl~aDlg~s~~l~~f~~~fp~R~id~GIaE~~mvg~AaGlA~~--G~~Pi~~t-fa~Fl~ 543 (654)
...++.++|.++..+.+++ ++..|+|.+..+..+.+ -..+++.. -..+.+|.|+++. ..+.++-+ -.+++.
T Consensus 18 il~al~~al~~l~~~~~~~-ivvsdiGc~~~~~~~~~---~~~~~~~~--G~alp~A~GaklA~Pd~~VV~i~GDG~~f~ 91 (279)
T PRK11866 18 ILEALRKALAELGIPPENV-VVVSGIGCSSNLPEFLN---TYGIHGIH--GRVLPIATGVKWANPKLTVIGYGGDGDGYG 91 (279)
T ss_pred HHHHHHHHHHHhcCCCCCE-EEEECCchhhhhhhhcc---CCCccccc--ccHHHHHHHHHHHCCCCcEEEEECChHHHH
Confidence 3456666665554334454 44467776553322211 11222222 3445666776665 34444444 564444
Q ss_pred hHHHHHHHhhhcCCCCEEEEEecCCc---cC-CCCCCC--------C---------ChhhHHHHhcCCCCEEEecCCHHH
Q 006251 544 RGYDQVVHDVDLQKLPVRFAMDRAGL---VG-ADGPTH--------C---------GAFDVTFMSCLPNMVVMAPSDEAE 602 (654)
Q Consensus 544 ra~dQI~~~~a~~~lpV~~v~~~~G~---~g-~dG~tH--------q---------~~edla~~r~iPnl~V~~PsD~~E 602 (654)
-.+..+.+ ++..++|++++.-..+. ++ ..-++- . ....++.-...+.+....+.++.|
T Consensus 92 ig~~eL~t-A~rrn~~i~vIV~nN~~ygmtggQ~s~~t~~g~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~ 170 (279)
T PRK11866 92 IGLGHLPH-AARRNVDITYIVSNNQVYGLTTGQASPTTPRGVKTKTTPDGNIEEPFNPIALALAAGATFVARGFSGDVKH 170 (279)
T ss_pred ccHHHHHH-HHHHCcCcEEEEEEChhhhhhcccccCCCCCCceeeccCCCCCCCCCCHHHHHHHCCCCEEEEEcCCCHHH
Confidence 55666544 56778998887643332 22 111110 0 112233333344455667799999
Q ss_pred HHHHHHHHHhCCCCcEEEEecC
Q 006251 603 LMHMVATAAVIDDRPSCFRFPR 624 (654)
Q Consensus 603 ~~~ll~~al~~~~~P~~ir~~r 624 (654)
+..+++.|++ .++|++|-.-.
T Consensus 171 l~~~l~~Al~-~~Gps~I~v~~ 191 (279)
T PRK11866 171 LKEIIKEAIK-HKGFSFIDVLS 191 (279)
T ss_pred HHHHHHHHHh-CCCCEEEEEeC
Confidence 9999999985 68999886543
No 182
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=91.20 E-value=7.7 Score=37.68 Aligned_cols=115 Identities=11% Similarity=0.003 Sum_probs=71.3
Q ss_pred CccccchhHHHHHHHHHHHHhc-CCeeEEee-hHHHHHhHHHHHHHhhhcCCCCEEEEEecCCccCCCCCCCCChhhHHH
Q 006251 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTF 585 (654)
Q Consensus 508 R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~t-fa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~~g~dG~tHq~~edla~ 585 (654)
|++.+ -.|+++..+|.|+|.. |...+|.+ ..+=+..++.-+ ..+...+.||+++.............+|......+
T Consensus 40 ~~v~~-rhE~~A~~mA~gyar~tg~~~v~~~t~GpG~~n~~~~l-~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~ 117 (164)
T cd07039 40 EFIQV-RHEEAAAFAASAEAKLTGKLGVCLGSSGPGAIHLLNGL-YDAKRDRAPVLAIAGQVPTDELGTDYFQEVDLLAL 117 (164)
T ss_pred eEEEe-CCHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHH-HHHHhcCCCEEEEecCCcccccCCCCCcccCHHHH
Confidence 55554 8999999999999997 54434333 433333444433 33445789999986332211111124776677777
Q ss_pred HhcCCCCEEEecCCHHHHHHHHHHHHhC---CCCcEEEEecCC
Q 006251 586 MSCLPNMVVMAPSDEAELMHMVATAAVI---DDRPSCFRFPRG 625 (654)
Q Consensus 586 ~r~iPnl~V~~PsD~~E~~~ll~~al~~---~~~P~~ir~~r~ 625 (654)
++.+-. -...+.++.++...++.|+.. ..+|++|-+|+.
T Consensus 118 ~~~~tk-~~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~d 159 (164)
T cd07039 118 FKDVAV-YNETVTSPEQLPELLDRAIRTAIAKRGVAVLILPGD 159 (164)
T ss_pred HHHhhc-EEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeChH
Confidence 887765 345556777776666655432 468999988764
No 183
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=90.66 E-value=4.2 Score=43.39 Aligned_cols=146 Identities=12% Similarity=0.136 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHhhCCcEEEEecCccCCCChhhHHHhCCCCccccchhH---HHHHHHHHHHHhcC-CeeEEee--hHHH
Q 006251 468 TQYFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAE---QHAVTFAAGLASEG-VKPFCAI--YSSF 541 (654)
Q Consensus 468 ~~a~~~aL~~~~~~d~~vvvl~aDlg~s~~l~~f~~~fp~R~id~GIaE---~~mvg~AaGlA~~G-~~Pi~~t--fa~F 541 (654)
..++.++|.++....++.+ +..|+|.+.. .| +++++.--- -..+.+|.|.++.. -++++.+ -.+|
T Consensus 13 ~~~~~~a~~~l~~~p~d~i-ivsdiGc~~~-------~~-~~l~~~~~~t~mG~alPaAiGaklA~Pd~~VVai~GDG~f 83 (287)
T TIGR02177 13 LSALQRALAELNLDPEQVV-VVSGIGCSAK-------TP-HYVNVNGFHGLHGRALPVATGIKLANPHLKVIVVGGDGDL 83 (287)
T ss_pred HHHHHHHHHHhcCCCCCEE-EEECCCcccc-------cC-CeEecCCcccccccHHHHHHHHHHHCCCCcEEEEeCchHH
Confidence 3456677766554444544 4457776542 23 455432211 22445667766653 2445544 6776
Q ss_pred HHhHHHHHHHhhhcCCCCEEEEEecCCc---cC-CCCCCC--------------CChhhHHHHhcCCCC--E-EEecCCH
Q 006251 542 LQRGYDQVVHDVDLQKLPVRFAMDRAGL---VG-ADGPTH--------------CGAFDVTFMSCLPNM--V-VMAPSDE 600 (654)
Q Consensus 542 l~ra~dQI~~~~a~~~lpV~~v~~~~G~---~g-~dG~tH--------------q~~edla~~r~iPnl--~-V~~PsD~ 600 (654)
+......+. .++..++||+++.-..+. ++ ..-++- ....|+.+++.--+. . .....++
T Consensus 84 ~~mg~~eL~-tA~r~nl~I~vIVlNN~~yGmt~gQ~sp~t~~G~~~~~~~~g~~~~~~np~~~a~A~g~g~va~~~~~~~ 162 (287)
T TIGR02177 84 YGIGGNHFV-AAGRRNVDITVIVHDNQVYGLTKGQASPTLLKGVKTKSLPYPNIQDPVNPLLLAIALGYTFVARGFSGDV 162 (287)
T ss_pred HhccHHHHH-HHHHhCcCeEEEEEECHHHHhhhcccccCccCCcceeecccCccCCCCCHHHHHHhCCCCeEEEEecCCH
Confidence 544455543 356778998887643322 21 111110 001122222222222 2 2336899
Q ss_pred HHHHHHHHHHHhCCCCcEEEEecC
Q 006251 601 AELMHMVATAAVIDDRPSCFRFPR 624 (654)
Q Consensus 601 ~E~~~ll~~al~~~~~P~~ir~~r 624 (654)
.|+..+++.|++ .++|++|-.-.
T Consensus 163 ~eL~~ai~~Al~-~~GpslIeV~~ 185 (287)
T TIGR02177 163 AHLKEIIKEAIN-HKGYALVDILQ 185 (287)
T ss_pred HHHHHHHHHHHh-CCCCEEEEEeC
Confidence 999999999985 78999885543
No 184
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=90.54 E-value=2.7 Score=41.44 Aligned_cols=117 Identities=15% Similarity=0.120 Sum_probs=66.9
Q ss_pred hCCCCccccch-hH-HHHHHHHHHHHhc--CCeeEEee-hHHHHHhHHHHHHHhhhcCCCCEEEEEe-cCCcc-------
Q 006251 504 RFPDRCFDVGI-AE-QHAVTFAAGLASE--GVKPFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMD-RAGLV------- 570 (654)
Q Consensus 504 ~fp~R~id~GI-aE-~~mvg~AaGlA~~--G~~Pi~~t-fa~Fl~ra~dQI~~~~a~~~lpV~~v~~-~~G~~------- 570 (654)
..|.+++..+. .= -..++.|.|.++. +.+.++-+ -..|+... ..+ ..++..++|++++.- ..++.
T Consensus 38 ~~~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~GDG~f~~~~-~eL-~ta~~~~lpi~ivV~nN~~~~~~~~~~~ 115 (186)
T cd02015 38 KKPRSWLTSGGLGTMGFGLPAAIGAKVARPDKTVICIDGDGSFQMNI-QEL-ATAAQYNLPVKIVILNNGSLGMVRQWQE 115 (186)
T ss_pred CCCCeEEeCCCccchhchHHHHHHHHHhCCCCeEEEEEcccHHhccH-HHH-HHHHHhCCCeEEEEEECCccHHHHHHHH
Confidence 44778886532 11 1244566666665 33444444 67777543 333 345677899887664 34321
Q ss_pred ---CC-CC-CCCCChhhHHHHhcCCCCEEEecCCHHHHHHHHHHHHhCCCCcEEEEec
Q 006251 571 ---GA-DG-PTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFP 623 (654)
Q Consensus 571 ---g~-dG-~tHq~~edla~~r~iPnl~V~~PsD~~E~~~ll~~al~~~~~P~~ir~~ 623 (654)
+. .. .......|.+-+..-=|+.-+.-.++.|+...++.++. .++|++|-..
T Consensus 116 ~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~-~~~p~liev~ 172 (186)
T cd02015 116 LFYEGRYSHTTLDSNPDFVKLAEAYGIKGLRVEKPEELEAALKEALA-SDGPVLLDVL 172 (186)
T ss_pred HHcCCceeeccCCCCCCHHHHHHHCCCceEEeCCHHHHHHHHHHHHh-CCCCEEEEEE
Confidence 00 01 11112234333333237777777889999999999974 6889998554
No 185
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=90.46 E-value=3.5 Score=44.27 Aligned_cols=92 Identities=7% Similarity=-0.016 Sum_probs=59.0
Q ss_pred eeEE-ee-hHHHHHhHHHHHHHhhhcCCCCEEEEEecCCccCCCCCC---------------------CCChhhHHHHhc
Q 006251 532 KPFC-AI-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPT---------------------HCGAFDVTFMSC 588 (654)
Q Consensus 532 ~Pi~-~t-fa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~~g~dG~t---------------------Hq~~edla~~r~ 588 (654)
..++ .+ -.++..-.++. ++.++..++||++++-.-...+.-|.+ .-.+..+..-..
T Consensus 93 ~~Vva~~GDG~~~~~g~~~-l~~A~~~~~~v~~vv~dN~~~~~TGgQ~S~~Tp~ga~t~tsp~G~~~~kkdi~~i~~a~g 171 (300)
T PRK11864 93 VIVVGWAGDGGTADIGFQA-LSGAAERNHDILYIMYDNEAYMNTGIQRSSSTPYGAWTTTTPGGKREHKKPVPDIMAAHK 171 (300)
T ss_pred cEEEEEEccCccccccHHH-HHHHHHhCcCEEEEEECCeeeecCCCCCCCCCcCCCccccCCCCCcCCCCCHHHHHHHcC
Confidence 4555 33 56666656655 467788999999986332221111111 111244444455
Q ss_pred CCCCEEEecCCHHHHHHHHHHHHhCCCCcEEEEecCC
Q 006251 589 LPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRG 625 (654)
Q Consensus 589 iPnl~V~~PsD~~E~~~ll~~al~~~~~P~~ir~~r~ 625 (654)
+|-+....|+|+.++...++.|++ .++|++|..-..
T Consensus 172 ~~yVA~~~~~~~~~~~~~i~~A~~-~~Gps~I~~~sp 207 (300)
T PRK11864 172 VPYVATASIAYPEDFIRKLKKAKE-IRGFKFIHLLAP 207 (300)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHh-CCCCEEEEEeCC
Confidence 666778999999999999999975 789999976443
No 186
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=90.46 E-value=6.9 Score=40.42 Aligned_cols=90 Identities=11% Similarity=0.080 Sum_probs=54.7
Q ss_pred CeeEEee--hHHHHHhHHHHHHHhhhcCCCCEEEEEecCCccCCCCCCCC-----------------------ChhhHH-
Q 006251 531 VKPFCAI--YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHC-----------------------GAFDVT- 584 (654)
Q Consensus 531 ~~Pi~~t--fa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~~g~dG~tHq-----------------------~~edla- 584 (654)
-+|++.+ -..|++..+..+. .++..++||+++.-..+..|.-|.+++ ..-|+.
T Consensus 80 ~r~VV~i~GDG~~~~m~~~eL~-ta~~~~~pv~~vVlNN~~yg~tg~q~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~ 158 (235)
T cd03376 80 DITVVAFAGDGGTADIGFQALS-GAAERGHDILYICYDNEAYMNTGIQRSGSTPYGAWTTTTPVGKVSFGKKQPKKDLPL 158 (235)
T ss_pred CCeEEEEEcCchHHhhHHHHHH-HHHHcCCCeEEEEECCcccccCCCCCCCCCCCCCEeecCCCCccccccccccCCHHH
Confidence 4677766 5666555666654 466789999888744433221111111 111322
Q ss_pred HHhcCCCCE---EEecCCHHHHHHHHHHHHhCCCCcEEEEec
Q 006251 585 FMSCLPNMV---VMAPSDEAELMHMVATAAVIDDRPSCFRFP 623 (654)
Q Consensus 585 ~~r~iPnl~---V~~PsD~~E~~~ll~~al~~~~~P~~ir~~ 623 (654)
+.+++ |+. .+...++.|+..+++.+++ .++|++|-..
T Consensus 159 iA~a~-G~~~~~~~~v~~~~el~~al~~a~~-~~gP~lIev~ 198 (235)
T cd03376 159 IMAAH-NIPYVATASVAYPEDLYKKVKKALS-IEGPAYIHIL 198 (235)
T ss_pred HHHHc-CCcEEEEEcCCCHHHHHHHHHHHHh-CCCCEEEEEE
Confidence 22333 443 4678999999999999985 6899888543
No 187
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=89.99 E-value=7.3 Score=41.86 Aligned_cols=105 Identities=11% Similarity=0.099 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhc----CC--eeEEee-hHHHHHhHHHHHHHhhhcCCCCEEEEEecCCccCCCCCCC-------------
Q 006251 518 HAVTFAAGLASE----GV--KPFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTH------------- 577 (654)
Q Consensus 518 ~mvg~AaGlA~~----G~--~Pi~~t-fa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~~g~dG~tH------------- 577 (654)
+..++|.|++.. +. +.++.. -..|..-++..+. .++..+.++++++-.-+..+.-|.+-
T Consensus 73 ~~~a~a~Gi~~a~~~~~~~~~Vv~~~GDG~~~dIG~~~L~-~a~~r~~ni~~ivlDNe~Y~nTGgQ~S~~Tp~Ga~t~ts 151 (299)
T PRK11865 73 NAAAVASGIERAVKALGKKVNVVAIGGDGGTADIGFQSLS-GAMERGHNILYLMYDNEAYMNTGIQRSGSTPFGASTTTS 151 (299)
T ss_pred chHHHHHHHHHHHHHhcCCCeEEEEeCCchHhhccHHHHH-HHHHcCCCeEEEEECCccccCCCCCCCCCCCCCcccccC
Confidence 455666666554 33 333333 6777766776654 45677888888763333221111111
Q ss_pred -------------CChhhHHHHhcCCCCEEEecCCHHHHHHHHHHHHhCCCCcEEEEecC
Q 006251 578 -------------CGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPR 624 (654)
Q Consensus 578 -------------q~~edla~~r~iPnl~V~~PsD~~E~~~ll~~al~~~~~P~~ir~~r 624 (654)
-.+..++.....|-+..+.|+|+.|+...++.|++ .++|++|..-.
T Consensus 152 p~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~~-~~Gps~I~v~s 210 (299)
T PRK11865 152 PAGKYSRGEDRPKKNMPLIMAAHGIPYVATASIGYPEDFMEKVKKAKE-VEGPAYIQVLQ 210 (299)
T ss_pred CCCcccCCCCCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHh-CCCCEEEEEEC
Confidence 11334433356666778899999999999999975 68999886543
No 188
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=89.74 E-value=4.7 Score=42.57 Aligned_cols=38 Identities=18% Similarity=0.363 Sum_probs=31.3
Q ss_pred eEEEEEcCCC--cccchHHHHHHHHhhcCCCEEEEEECCC
Q 006251 277 NVISVIGDGA--MTAGQAYEAMNNAGFLDANLIVVLNDNK 314 (654)
Q Consensus 277 ~VvaviGDGa--l~eG~~~EAln~A~~~~lnLi~Il~dN~ 314 (654)
+++.++.||+ .++|..-+++..|...+..+++|+-||.
T Consensus 166 qlilLISDG~~~~~e~~~~~~~r~a~e~~i~l~~I~ld~~ 205 (266)
T cd01460 166 QLLLIISDGRGEFSEGAQKVRLREAREQNVFVVFIIIDNP 205 (266)
T ss_pred cEEEEEECCCcccCccHHHHHHHHHHHcCCeEEEEEEcCC
Confidence 8999999999 8889887777778777777777777764
No 189
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=89.38 E-value=6 Score=38.81 Aligned_cols=117 Identities=15% Similarity=0.155 Sum_probs=67.9
Q ss_pred hCCCCccccch--hHHHHHHHHHHHHhc-CCeeEEee--hHHHHHhHHHHHHHhhhcCCCCEEEEE-ecCCc--cC----
Q 006251 504 RFPDRCFDVGI--AEQHAVTFAAGLASE-GVKPFCAI--YSSFLQRGYDQVVHDVDLQKLPVRFAM-DRAGL--VG---- 571 (654)
Q Consensus 504 ~fp~R~id~GI--aE~~mvg~AaGlA~~-G~~Pi~~t--fa~Fl~ra~dQI~~~~a~~~lpV~~v~-~~~G~--~g---- 571 (654)
..|.|++..+- +=-..+..|.|.++. .-+|++.+ -..|+... ..+ ..+...++|++++. ...|+ ..
T Consensus 36 ~~~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~GDG~f~m~~-~eL-~ta~~~~l~vi~vV~NN~~~g~~~~~~~ 113 (177)
T cd02010 36 YAPNTCLISNGLATMGVALPGAIGAKLVYPDRKVVAVSGDGGFMMNS-QEL-ETAVRLKIPLVVLIWNDNGYGLIKWKQE 113 (177)
T ss_pred CCCCCEEeCCCChhhhhHHHHHHHHHHhCCCCcEEEEEcchHHHhHH-HHH-HHHHHHCCCeEEEEEECCcchHHHHHHH
Confidence 44788886532 112233466666654 34555555 67776544 222 33556689988875 44443 11
Q ss_pred -CCCC-CCC--ChhhHHHHhcCCCCEEEecCCHHHHHHHHHHHHhCCCCcEEEEec
Q 006251 572 -ADGP-THC--GAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFP 623 (654)
Q Consensus 572 -~dG~-tHq--~~edla~~r~iPnl~V~~PsD~~E~~~ll~~al~~~~~P~~ir~~ 623 (654)
..+. .+. ...|.+-+..-=|++-+.-.++.|++..++.+++ .++|++|-..
T Consensus 114 ~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~-~~~p~liev~ 168 (177)
T cd02010 114 KEYGRDSGVDFGNPDFVKYAESFGAKGYRIESADDLLPVLERALA-ADGVHVIDCP 168 (177)
T ss_pred HhcCCcccCcCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHh-CCCCEEEEEE
Confidence 0011 111 1124343333337788888999999999999975 6899998654
No 190
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=89.28 E-value=6.6 Score=45.65 Aligned_cols=114 Identities=14% Similarity=0.112 Sum_probs=74.8
Q ss_pred CccccchhHHHHHHHHHHHHhc-CCeeEEee-hHHHHHhHHHHHHHhhhcCCCCEEEEEecCCc--cCCCCCCCCChhhH
Q 006251 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFDV 583 (654)
Q Consensus 508 R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~t-fa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~--~g~dG~tHq~~edl 583 (654)
|++.+ -.|++.+.+|.|+|.. |...+|.+ +.+=+..++.-| ..+-..+.||+++...... .+. + .+|..+..
T Consensus 44 ~~i~~-rhE~~A~~mAdgYar~tg~~gv~~~t~GPG~~n~l~gi-~~A~~~~~Pvl~i~G~~~~~~~~~-~-~~q~~d~~ 119 (574)
T PRK07979 44 DHVLV-RHEQAAVHMADGLARATGEVGVVLVTSGPGATNAITGI-ATAYMDSIPLVVLSGQVATSLIGY-D-AFQECDMV 119 (574)
T ss_pred eEEEe-CcHHHHHHHHHHHHHHhCCceEEEECCCccHhhhHHHH-HHHhhcCCCEEEEECCCChhccCC-C-CCceecHH
Confidence 66665 7899999999999986 76666655 655554454443 3344568999998633332 132 2 35555566
Q ss_pred HHHhcCCCCEEEecCCHHHHHHHHHHHHh----CCCCcEEEEecCCC
Q 006251 584 TFMSCLPNMVVMAPSDEAELMHMVATAAV----IDDRPSCFRFPRGN 626 (654)
Q Consensus 584 a~~r~iPnl~V~~PsD~~E~~~ll~~al~----~~~~P~~ir~~r~~ 626 (654)
.+++.+=. -.+...++.++..+++.|+. ...+|+||.+|+..
T Consensus 120 ~l~~~~tk-~~~~v~~~~~~~~~l~~A~~~A~~~~~GPv~l~iP~Dv 165 (574)
T PRK07979 120 GISRPVVK-HSFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPKDI 165 (574)
T ss_pred HHhhcccc-eEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChhh
Confidence 66676544 23445677787777776654 24689999999864
No 191
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=88.95 E-value=5.7 Score=38.79 Aligned_cols=114 Identities=18% Similarity=0.177 Sum_probs=63.1
Q ss_pred CCCCcc-ccchhHH-HHHHHHHHHHhcCCeeEEee--hHHHHHhHHHHHHHhhhcCCCCEEEEE-ecCCcc--C--CC--
Q 006251 505 FPDRCF-DVGIAEQ-HAVTFAAGLASEGVKPFCAI--YSSFLQRGYDQVVHDVDLQKLPVRFAM-DRAGLV--G--AD-- 573 (654)
Q Consensus 505 fp~R~i-d~GIaE~-~mvg~AaGlA~~G~~Pi~~t--fa~Fl~ra~dQI~~~~a~~~lpV~~v~-~~~G~~--g--~d-- 573 (654)
.|.|++ +.|..-. .-++.|.|.++.--+|++.+ -..|++-. ..+ ..+...++|++++. ...++. . ..
T Consensus 40 ~~~~~~~~~g~g~mG~~l~~aiGa~la~~~~Vv~i~GDGsf~m~~-~eL-~ta~~~~l~v~ivVlNN~~~g~~~~~~~~~ 117 (175)
T cd02009 40 KTVRVFANRGASGIDGTLSTALGIALATDKPTVLLTGDLSFLHDL-NGL-LLGKQEPLNLTIVVINNNGGGIFSLLPQAS 117 (175)
T ss_pred CCceEEecCCccchhhHHHHHHHHHhcCCCCEEEEEehHHHHHhH-HHH-HhccccCCCeEEEEEECCCCchheeccCCc
Confidence 477777 4443221 23456666555434555554 67777543 223 33456689987766 344321 1 00
Q ss_pred -CC---CCC---ChhhHH-HHhcCCCCEEEecCCHHHHHHHHHHHHhCCCCcEEEEe
Q 006251 574 -GP---THC---GAFDVT-FMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRF 622 (654)
Q Consensus 574 -G~---tHq---~~edla-~~r~iPnl~V~~PsD~~E~~~ll~~al~~~~~P~~ir~ 622 (654)
+. ... ...|.. +.+++ |+.-+.-.++.|+...++.+++ .++|++|-.
T Consensus 118 ~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~-~~~p~lIev 172 (175)
T cd02009 118 FEDEFERLFGTPQGLDFEHLAKAY-GLEYRRVSSLDELEQALESALA-QDGPHVIEV 172 (175)
T ss_pred ccchhhhhhcCCCCCCHHHHHHHc-CCCeeeCCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 00 000 011222 23333 6677788899999999999975 688998743
No 192
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=88.89 E-value=3.4 Score=48.10 Aligned_cols=112 Identities=22% Similarity=0.271 Sum_probs=82.3
Q ss_pred CCccccchhHHHHHHHHHHHHhcCCeeEEeehHHHHHhHHHHHHHhhhcCCCC---EEEEEecCCccCCCCCCCC--Chh
Q 006251 507 DRCFDVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLP---VRFAMDRAGLVGADGPTHC--GAF 581 (654)
Q Consensus 507 ~R~id~GIaE~~mvg~AaGlA~~G~~Pi~~tfa~Fl~ra~dQI~~~~a~~~lp---V~~v~~~~G~~g~dG~tHq--~~e 581 (654)
+-+++-+..|--+...|.|.+..|.+.++..=..=+.++.|.+++ +++.... |+++++..| -|+ .-.
T Consensus 58 ~vy~e~s~NEkvA~e~a~GA~~~G~ral~~mKhVGlNvAsDpl~s-~ay~Gv~GGlviv~aDDpg-------~~SSqneq 129 (640)
T COG4231 58 DVYFEWSLNEKVALETAAGASYAGVRALVTMKHVGLNVASDPLMS-LAYAGVTGGLVIVVADDPG-------MHSSQNEQ 129 (640)
T ss_pred cEEEEecccHHHHHHHHHHhhhcCceeeEEecccccccchhhhhh-hhhcCccccEEEEEccCCC-------cccccchh
Confidence 789999999999999999999999998887643335688887654 4554422 333333333 232 234
Q ss_pred hHHHHhcCCCCEEEecCCHHHHHHHHHHHHhC---CCCcEEEEecCCC
Q 006251 582 DVTFMSCLPNMVVMAPSDEAELMHMVATAAVI---DDRPSCFRFPRGN 626 (654)
Q Consensus 582 dla~~r~iPnl~V~~PsD~~E~~~ll~~al~~---~~~P~~ir~~r~~ 626 (654)
|--++...-.+-|+.|+|++|+..+++.+++- ..-|+++|.....
T Consensus 130 dsr~y~~~a~iPvLeP~d~Qea~d~~~~afelSe~~~~pVilr~ttr~ 177 (640)
T COG4231 130 DSRAYGKFALIPVLEPSDPQEAYDYVKYAFELSEKSGLPVILRTTTRV 177 (640)
T ss_pred HhHHHHHhcCceeecCCChHHHHHHHHHHHHHHHHhCCCEEEEEEeee
Confidence 55567778888999999999999999988764 4459999987654
No 193
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=88.34 E-value=8.9 Score=40.91 Aligned_cols=147 Identities=15% Similarity=0.189 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEecCccCCCChhhHHHhCCCCccccc-h--hHHHHHHHHHHHHhc--CCeeEEee-hHH
Q 006251 467 YTQYFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVG-I--AEQHAVTFAAGLASE--GVKPFCAI-YSS 540 (654)
Q Consensus 467 ~~~a~~~aL~~~~~~d~~vvvl~aDlg~s~~l~~f~~~fp~R~id~G-I--aE~~mvg~AaGlA~~--G~~Pi~~t-fa~ 540 (654)
..+++.++|.++....++.+++ .|+|.+... + ++++++ + .=-..+++|.|+++. ..+.++-+ -.+
T Consensus 28 il~~l~~al~~l~~~p~d~vvv-sdiGc~~~~-------~-~~~~~~~~~g~mG~alpaAiGaklA~Pd~~VV~i~GDG~ 98 (286)
T PRK11867 28 ILAALQRALAELGLDPENVAVV-SGIGCSGRL-------P-GYINTYGFHTIHGRALAIATGLKLANPDLTVIVVTGDGD 98 (286)
T ss_pred HHHHHHHHHHHhCCCCCcEEEE-eCCcccccc-------C-ccccccchhhhhhcHHHHHHHHHHhCCCCcEEEEeCccH
Confidence 4456666666554444454444 577755422 1 344432 1 112244566666665 44444444 554
Q ss_pred HHHhHHHHHHHhhhcCCCCEEEEEecC-Cc--cC-CCCC----------CCCCh----hh-HHHHhcCCCCEE--EecCC
Q 006251 541 FLQRGYDQVVHDVDLQKLPVRFAMDRA-GL--VG-ADGP----------THCGA----FD-VTFMSCLPNMVV--MAPSD 599 (654)
Q Consensus 541 Fl~ra~dQI~~~~a~~~lpV~~v~~~~-G~--~g-~dG~----------tHq~~----ed-la~~r~iPnl~V--~~PsD 599 (654)
+++-....+.+ ++..++||+++.-.. ++ ++ ...+ +..+. .| +++..+...-.| ....+
T Consensus 99 ~f~mg~~eL~t-A~r~nl~i~vIV~NN~~yGmt~~q~s~tt~~g~~~~~~~~g~~~~~~d~~~lA~a~Ga~~va~~~~~~ 177 (286)
T PRK11867 99 ALAIGGNHFIH-ALRRNIDITYILFNNQIYGLTKGQYSPTSPVGFVTKTTPYGSIEPPFNPVELALGAGATFVARGFDSD 177 (286)
T ss_pred HHhCCHHHHHH-HHHhCCCcEEEEEeCHHHhhhcCccCCCCCCCcccccccCCCCCCCCCHHHHHHHCCCcEEEEecCCC
Confidence 34444455444 566789988876433 22 21 1111 00111 22 223333432223 35889
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEecC
Q 006251 600 EAELMHMVATAAVIDDRPSCFRFPR 624 (654)
Q Consensus 600 ~~E~~~ll~~al~~~~~P~~ir~~r 624 (654)
+.|+..+++.|++ .++|++|-.-.
T Consensus 178 ~~el~~al~~Al~-~~Gp~lIev~~ 201 (286)
T PRK11867 178 VKQLTELIKAAIN-HKGFSFVEILQ 201 (286)
T ss_pred HHHHHHHHHHHHh-CCCCEEEEEeC
Confidence 9999999999985 68999885543
No 194
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=87.80 E-value=9.1 Score=37.69 Aligned_cols=142 Identities=18% Similarity=0.209 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHhhCCcEEEEecCccCCCChhhHHH--hCCCCccccchhHHHHHHHHHHHHhcCCeeEEee--hHHHHHh
Q 006251 469 QYFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQK--RFPDRCFDVGIAEQHAVTFAAGLASEGVKPFCAI--YSSFLQR 544 (654)
Q Consensus 469 ~a~~~aL~~~~~~d~~vvvl~aDlg~s~~l~~f~~--~fp~R~id~GIaE~~mvg~AaGlA~~G~~Pi~~t--fa~Fl~r 544 (654)
+++.+.|.+.+. +.+++ .|.|.... .+.. ..|.+++..|.-= ..++.|.|+++...++++.+ -..|+.-
T Consensus 2 ~~~~~~l~~~~~--~~~vv--~d~G~~~~--~~~~~~~~~~~~~~~g~mG-~~lp~AiGaala~~~~vv~i~GDG~f~m~ 74 (179)
T cd03372 2 RDAIKTLIADLK--DELVV--SNIGFPSK--ELYAAGDRPLNFYMLGSMG-LASSIGLGLALAQPRKVIVIDGDGSLLMN 74 (179)
T ss_pred HHHHHHHHHhCC--CCeEE--eCCCHhHH--HHHHccCcccccccccchh-hHHHHHHHHHhcCCCcEEEEECCcHHHhC
Confidence 345556666665 33333 45443321 1222 2366776433322 22246677766543666665 5667532
Q ss_pred HHHHHHHhhhcCC-CCEEEE-EecCCccCCCCCCCCC---hhhHHHHhcCCCCEEEecC-CHHHHHHHHHHHHhCCCCcE
Q 006251 545 GYDQVVHDVDLQK-LPVRFA-MDRAGLVGADGPTHCG---AFDVTFMSCLPNMVVMAPS-DEAELMHMVATAAVIDDRPS 618 (654)
Q Consensus 545 a~dQI~~~~a~~~-lpV~~v-~~~~G~~g~dG~tHq~---~edla~~r~iPnl~V~~Ps-D~~E~~~ll~~al~~~~~P~ 618 (654)
. ..+ ..++..+ .|++++ ....++ +.-+..+.. ..|..-+..-=|+..+... +++|+..+++.++ ++|.
T Consensus 75 ~-~el-~ta~~~~~~~l~vvV~NN~~~-~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~~el~~al~~a~---~gp~ 148 (179)
T cd03372 75 L-GAL-ATIAAEKPKNLIIVVLDNGAY-GSTGNQPTHAGKKTDLEAVAKACGLDNVATVASEEAFEKAVEQAL---DGPS 148 (179)
T ss_pred H-HHH-HHHHHcCCCCEEEEEEcCccc-cccCCCCCCCCCCCCHHHHHHHcCCCeEEecCCHHHHHHHHHHhc---CCCE
Confidence 2 222 3334444 456555 455543 211221111 1122222222266666666 9999999999985 6899
Q ss_pred EEEec
Q 006251 619 CFRFP 623 (654)
Q Consensus 619 ~ir~~ 623 (654)
+|-..
T Consensus 149 lIev~ 153 (179)
T cd03372 149 FIHVK 153 (179)
T ss_pred EEEEE
Confidence 87554
No 195
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=87.30 E-value=9.5 Score=44.12 Aligned_cols=117 Identities=12% Similarity=0.044 Sum_probs=74.4
Q ss_pred CCccccchhHHHHHHHHHHHHhc-CCeeEEee-hHHHHHhHHHHHHHhhhcCCCCEEEEEecCCccCCCCCCCCChhhHH
Q 006251 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVT 584 (654)
Q Consensus 507 ~R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~t-fa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~~g~dG~tHq~~edla 584 (654)
=|++.+ -.|++++.+|.|+|.. |...+|.+ +.+=+..++.-| ..+-..+.||+++.............+|..+...
T Consensus 40 i~~i~~-~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~~i-~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~ 117 (558)
T TIGR00118 40 IEHILV-RHEQGAAHAADGYARASGKVGVVLVTSGPGATNLVTGI-ATAYMDSIPMVVFTGQVPTSLIGSDAFQEADILG 117 (558)
T ss_pred ceEEEe-CcHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHH-HHHHhcCCCEEEEecCCCccccCCCCCcccChhh
Confidence 377776 8999999999999986 65445444 544444444443 3445678999998633222111122366666666
Q ss_pred HHhcCCCCEEEecCCHHHHHHHHHHHHhC----CCCcEEEEecCCC
Q 006251 585 FMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRGN 626 (654)
Q Consensus 585 ~~r~iPnl~V~~PsD~~E~~~ll~~al~~----~~~P~~ir~~r~~ 626 (654)
+++.+=-. .+...++.++..+++.|+.. ..+|+||-+|+..
T Consensus 118 ~~~~~tk~-~~~v~~~~~~~~~v~~A~~~A~~~~~GPV~i~iP~dv 162 (558)
T TIGR00118 118 ITMPITKH-SFQVKSAEDIPRIIKEAFHIATTGRPGPVLVDLPKDV 162 (558)
T ss_pred hhcCccce-eEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEcChhh
Confidence 77766543 33345777777777766542 3689999999764
No 196
>PRK07064 hypothetical protein; Provisional
Probab=87.13 E-value=12 Score=42.99 Aligned_cols=116 Identities=13% Similarity=0.098 Sum_probs=72.0
Q ss_pred CccccchhHHHHHHHHHHHHhc-CCeeEEe-ehHHHHHhHHHHHHHhhhcCCCCEEEEEecCCc--cCCC-CCCCCChhh
Q 006251 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGAD-GPTHCGAFD 582 (654)
Q Consensus 508 R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~-tfa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~--~g~d-G~tHq~~ed 582 (654)
|++.+ ..|++...+|.|+|.. |...+|. +..+=+..++.-| ..+-..+.||+++...... .+.+ +..|+....
T Consensus 43 ~~i~~-~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N~~~~i-~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~ 120 (544)
T PRK07064 43 RFVPA-RGEAGAVNMADAHARVSGGLGVALTSTGTGAGNAAGAL-VEALTAGTPLLHITGQIETPYLDQDLGYIHEAPDQ 120 (544)
T ss_pred cEEee-ccHHHHHHHHHHHHHhcCCCeEEEeCCCCcHHHHHHHH-HHHHhcCCCEEEEeCCCCcccccCCCcccccccCH
Confidence 66665 8899999999999986 6544443 3443333444433 3445678999988632221 2322 234665567
Q ss_pred HHHHhcCCCCEEEecCCHHHHHHHHHHHH----hCCCCcEEEEecCCC
Q 006251 583 VTFMSCLPNMVVMAPSDEAELMHMVATAA----VIDDRPSCFRFPRGN 626 (654)
Q Consensus 583 la~~r~iPnl~V~~PsD~~E~~~ll~~al----~~~~~P~~ir~~r~~ 626 (654)
..+++.+-.. .+...++.++..+++.|+ ....+|+||-+|+..
T Consensus 121 ~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv 167 (544)
T PRK07064 121 LTMLRAVSKA-AFRVRSAETALATIREAVRVALTAPTGPVSVEIPIDI 167 (544)
T ss_pred HHHhhhhcce-EEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEeCHhH
Confidence 7777777643 344456666655555444 334799999999753
No 197
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=86.86 E-value=9.8 Score=43.84 Aligned_cols=117 Identities=15% Similarity=0.037 Sum_probs=75.1
Q ss_pred CCccccchhHHHHHHHHHHHHhc-CCeeEEee-hHHHHHhHHHHHHHhhhcCCCCEEEEEecCCccCCCCCCCCChhhHH
Q 006251 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVT 584 (654)
Q Consensus 507 ~R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~t-fa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~~g~dG~tHq~~edla 584 (654)
=|++.+ ..|+++..+|.|+|.. |...+|.+ +.+=+..++.-| ..+...+.||+++..........-..||.+.+..
T Consensus 37 i~~i~~-~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~gl-~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~ 114 (539)
T TIGR02418 37 IELIVV-RHEQNAAFMAQAVGRITGKPGVALVTSGPGCSNLVTGL-ATANSEGDPVVAIGGQVKRADLLKLTHQSMDNVA 114 (539)
T ss_pred CCEEEe-CcHHHHHHHHHHHHHHhCCceEEEECCCCCHhHHHHHH-HHHhhcCCCEEEEeCCCcccccccCcccccchhh
Confidence 367776 7999999999999986 65444443 655444454443 3445578999998643222111123488777778
Q ss_pred HHhcCCCCEEEecCCHHHHHHHHHHHH----hCCCCcEEEEecCCC
Q 006251 585 FMSCLPNMVVMAPSDEAELMHMVATAA----VIDDRPSCFRFPRGN 626 (654)
Q Consensus 585 ~~r~iPnl~V~~PsD~~E~~~ll~~al----~~~~~P~~ir~~r~~ 626 (654)
+++.+-.. .+...++.++...+..|+ ....+|+||-+|+.-
T Consensus 115 ~~~~~tk~-~~~i~~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~dv 159 (539)
T TIGR02418 115 LFRPITKY-SAEVQDPDALSEVVANAFRAAESGKPGAAFVSLPQDV 159 (539)
T ss_pred hhhcceee-eeecCCHHHHHHHHHHHHHHHhcCCCCCEEEEcChhH
Confidence 88877543 344466667665555443 334689999999863
No 198
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=86.81 E-value=11 Score=44.15 Aligned_cols=115 Identities=16% Similarity=0.121 Sum_probs=70.2
Q ss_pred CCccccchhHHHHHHHHHHHHhc-CCeeEEee-hHHHHHhHHHHHHHhhhcCCCCEEEEEecCCc--cCCCCCCCCChhh
Q 006251 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFD 582 (654)
Q Consensus 507 ~R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~t-fa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~--~g~dG~tHq~~ed 582 (654)
=|++.+ --|++++.+|-|+|.. |...+|.+ +.+=+..++.-| ..+...+.||+++...... .+.+ .+|.+..
T Consensus 60 i~~i~~-rhE~~A~~~AdgYar~tg~~gv~~~t~GpG~~N~l~gl-~~A~~~~~Pvl~i~G~~~~~~~~~~--~~q~~d~ 135 (587)
T PRK06965 60 IQHVLV-RHEQAAVHAADGYARATGKVGVALVTSGPGVTNAVTGI-ATAYMDSIPMVVISGQVPTAAIGQD--AFQECDT 135 (587)
T ss_pred CeEEEe-CCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHH-HHHhhcCCCEEEEecCCCccccCCC--CcccccH
Confidence 467776 8999999999999987 65545444 544333444433 3455679999998643332 1222 3555555
Q ss_pred HHHHhcCCCCEEEecCCHHHHH----HHHHHHHhCCCCcEEEEecCCC
Q 006251 583 VTFMSCLPNMVVMAPSDEAELM----HMVATAAVIDDRPSCFRFPRGN 626 (654)
Q Consensus 583 la~~r~iPnl~V~~PsD~~E~~----~ll~~al~~~~~P~~ir~~r~~ 626 (654)
..+++.+--. .+...++.++. .+++.|.....+|+||-+|+.-
T Consensus 136 ~~l~~~itk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv 182 (587)
T PRK06965 136 VGITRPIVKH-NFLVKDVRDLAETVKKAFYIARTGRPGPVVVDIPKDV 182 (587)
T ss_pred HHHhcCCcce-eEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEeChhh
Confidence 5566665432 23344455444 4555554334689999999863
No 199
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=86.06 E-value=13 Score=40.04 Aligned_cols=102 Identities=14% Similarity=0.235 Sum_probs=59.9
Q ss_pred HHHHHHHHHhc--CCeeEEee-hHHHHHhHHHHHHHhhhcCCCCEEEEEecCCccCCCC----CC----------CC---
Q 006251 519 AVTFAAGLASE--GVKPFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADG----PT----------HC--- 578 (654)
Q Consensus 519 mvg~AaGlA~~--G~~Pi~~t-fa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~~g~dG----~t----------Hq--- 578 (654)
.+.+|.|.++. .++.++-+ -.+|+......+.+ ++..++||+++.-.-+..|.-+ ++ ..
T Consensus 75 alpaAiGaklA~pd~~VV~i~GDG~~~~mg~~eL~t-A~r~nl~i~vIV~NN~~YG~t~gQ~s~t~~~g~~~~~~~~g~~ 153 (301)
T PRK05778 75 AIAFATGAKLANPDLEVIVVGGDGDLASIGGGHFIH-AGRRNIDITVIVENNGIYGLTKGQASPTTPEGSKTKTAPYGNI 153 (301)
T ss_pred HHHHHHHHHHHCCCCcEEEEeCccHHHhccHHHHHH-HHHHCCCcEEEEEeCchhhcccCcccCCcCCCcccccccCCCc
Confidence 34566666665 44444444 66665444555544 5678999888764332221111 01 01
Q ss_pred -ChhhHHHHhcCCCCEEE---ecCCHHHHHHHHHHHHhCCCCcEEEEe
Q 006251 579 -GAFDVTFMSCLPNMVVM---APSDEAELMHMVATAAVIDDRPSCFRF 622 (654)
Q Consensus 579 -~~edla~~r~iPnl~V~---~PsD~~E~~~ll~~al~~~~~P~~ir~ 622 (654)
...|+.-++.--|..-+ ...++.|+..+++.|++ .++|++|-.
T Consensus 154 ~~~~d~~~lA~a~G~~~va~~~v~~~~eL~~ai~~A~~-~~GpalIeV 200 (301)
T PRK05778 154 EPPIDPCALALAAGATFVARSFAGDVKQLVELIKKAIS-HKGFAFIDV 200 (301)
T ss_pred CCCCCHHHHHHHCCCCEEEEeccCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 12344444444466554 68999999999999985 689998754
No 200
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=85.77 E-value=4.7 Score=37.74 Aligned_cols=49 Identities=22% Similarity=0.348 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHHcCCCCeEEEEE-cCCCcccchHHHHHHHHhhcCCCEEEEEECCC
Q 006251 258 SISAGLGMAVARDILGKNNNVISVI-GDGAMTAGQAYEAMNNAGFLDANLIVVLNDNK 314 (654)
Q Consensus 258 ~is~AlGmAlA~kl~g~~~~Vvavi-GDGal~eG~~~EAln~A~~~~lnLi~Il~dN~ 314 (654)
+..+|.|+|.+ +. ..++++. |.|..+ ..+++..|.....|+++|..+..
T Consensus 47 a~~~A~G~a~~----~~-~~v~~~~~gpg~~~---~~~~l~~a~~~~~Pvl~i~~~~~ 96 (154)
T cd06586 47 AAGAAAGYARA----GG-PPVVIVTSGTGLLN---AINGLADAAAEHLPVVFLIGARG 96 (154)
T ss_pred HHHHHHHHHHh----hC-CEEEEEcCCCcHHH---HHHHHHHHHhcCCCEEEEeCCCC
Confidence 35566666654 23 3333444 888764 66888888887899999997665
No 201
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=85.31 E-value=13 Score=43.18 Aligned_cols=117 Identities=12% Similarity=0.059 Sum_probs=73.0
Q ss_pred CCccccchhHHHHHHHHHHHHhc-CCeeEEee-hHHHHHhHHHHHHHhhhcCCCCEEEEEecCCccCCCCCCCCChhhHH
Q 006251 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVT 584 (654)
Q Consensus 507 ~R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~t-fa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~~g~dG~tHq~~edla 584 (654)
=|++.+ -.|++++.+|-|+|.. |...+|.+ +.+=+..++.-| ..+-..+.||+++..........-..||.+....
T Consensus 43 i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~vt~GPG~~N~l~gl-~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~ 120 (574)
T PRK06466 43 VEHILV-RHEQAATHMADGYARATGKTGVVLVTSGPGATNAITGI-ATAYMDSIPMVVLSGQVPSTLIGEDAFQETDMVG 120 (574)
T ss_pred ceEEEe-CcHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHH-HHHHhcCCCEEEEecCCCccccCCCcccccchhh
Confidence 466665 8999999999999986 54444443 544333444443 3445678999998633322111112367666666
Q ss_pred HHhcCCCCEEEecCCHHHHHHHHHHHHh----CCCCcEEEEecCCC
Q 006251 585 FMSCLPNMVVMAPSDEAELMHMVATAAV----IDDRPSCFRFPRGN 626 (654)
Q Consensus 585 ~~r~iPnl~V~~PsD~~E~~~ll~~al~----~~~~P~~ir~~r~~ 626 (654)
+++.+--. .+...++.++..+++.|+. ...+|+||.+|+..
T Consensus 121 l~~~itk~-s~~v~~~~~~~~~~~rA~~~A~~~~~GPV~l~iP~Dv 165 (574)
T PRK06466 121 ISRPIVKH-SFMVKHASEIPEIIKKAFYIAQSGRPGPVVVDIPKDM 165 (574)
T ss_pred hhhcccee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhH
Confidence 77776553 4445567766666655543 23689999999863
No 202
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=85.17 E-value=7.1 Score=45.58 Aligned_cols=117 Identities=16% Similarity=0.122 Sum_probs=72.0
Q ss_pred CCccccchhHHHHHHHHHHHHhc-CCeeEEee-hHHHHHhHHHHHHHhhhcCCCCEEEEEecCCccCCCCCCCCChhhHH
Q 006251 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVT 584 (654)
Q Consensus 507 ~R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~t-fa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~~g~dG~tHq~~edla 584 (654)
=|++.+ -.|++++.+|.|+|.. |...+|.+ +.+=+..++.-| ..+-..+.||+++..........-..+|.+.+..
T Consensus 44 i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~~~gi-~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~ 121 (588)
T PRK07525 44 IRFIDV-AHEQNAGHMADGYTRVTGRMGMVIGQNGPGITNFVTAV-ATAYWAHTPVVLVTPQAGTKTIGQGGFQEAEQMP 121 (588)
T ss_pred CCEEEe-cCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHH-HHHhhcCCCEEEEeCCCCcccCCCCCCcccchhh
Confidence 466665 8999999999999986 66555544 433233333333 3344568999999733332111122477667767
Q ss_pred HHhcCCCCEEEecCCHHHHHHHHHHHHh---CCCCcEEEEecCCC
Q 006251 585 FMSCLPNMVVMAPSDEAELMHMVATAAV---IDDRPSCFRFPRGN 626 (654)
Q Consensus 585 ~~r~iPnl~V~~PsD~~E~~~ll~~al~---~~~~P~~ir~~r~~ 626 (654)
+++.+-. -.+...++.++...++.|+. ...+|+||-+|+..
T Consensus 122 l~~~~tk-~~~~i~~~~~~~~~i~rA~~~A~~~~GPV~i~iP~Dv 165 (588)
T PRK07525 122 MFEDMTK-YQEEVRDPSRMAEVLNRVFDKAKRESGPAQINIPRDY 165 (588)
T ss_pred hhhhhee-EEEECCCHHHHHHHHHHHHHHHhcCCCCEEEEcChhH
Confidence 7777643 24455666666555544432 34689999999764
No 203
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=85.14 E-value=15 Score=36.33 Aligned_cols=144 Identities=17% Similarity=0.208 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHhhCCcEEEEecCccCCCChhhHH-HhCCCCccccchhHHHHHHHHHHHHhcCCeeEEee--hHHHHHhH
Q 006251 469 QYFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQ-KRFPDRCFDVGIAEQHAVTFAAGLASEGVKPFCAI--YSSFLQRG 545 (654)
Q Consensus 469 ~a~~~aL~~~~~~d~~vvvl~aDlg~s~~l~~f~-~~fp~R~id~GIaE~~mvg~AaGlA~~G~~Pi~~t--fa~Fl~ra 545 (654)
+++.++|.+.+. +.+++. |.|... ..-+. ...|.+++..|--=. .++.|.|.++.--+|++.+ -..|++-.
T Consensus 2 ~~~~~~l~~~l~--d~iiv~--d~G~~~-~~~~~~~~~~~~~~~~gsmG~-~lpaAiGa~la~~~~Vv~i~GDG~f~m~~ 75 (181)
T TIGR03846 2 IDAIRAIASYLE--DELVVS--NIGVPS-KELYAIRDRPLNFYMLGSMGL-ASSIGLGLALATDRTVIVIDGDGSLLMNL 75 (181)
T ss_pred HHHHHHHHHhCC--CCEEEe--cCCHhH-HHHHhhhcCCCCeeecccccc-HHHHHHHHHHcCCCcEEEEEcchHHHhhh
Confidence 345566666663 344443 444322 11222 134778876442222 2346666666534455555 67776433
Q ss_pred HHHHHHhhhcCC-CCEEEEEe-cCCccCCCC--CCCC-ChhhHHHHhcCCCCEEEe-cCCHHHHHHHHHHHHhCCCCcEE
Q 006251 546 YDQVVHDVDLQK-LPVRFAMD-RAGLVGADG--PTHC-GAFDVTFMSCLPNMVVMA-PSDEAELMHMVATAAVIDDRPSC 619 (654)
Q Consensus 546 ~dQI~~~~a~~~-lpV~~v~~-~~G~~g~dG--~tHq-~~edla~~r~iPnl~V~~-PsD~~E~~~ll~~al~~~~~P~~ 619 (654)
.. +..++..+ +|++++.- ..|+ |.-+ .+.. ...|.+-+..--|+.-+. ..++.|+...++ ++ ..++|++
T Consensus 76 -~e-l~ta~~~~~~pv~~vV~NN~~y-g~~~~q~~~~~~~~d~~~lA~a~G~~~~~~v~~~~~l~~al~-a~-~~~~p~l 150 (181)
T TIGR03846 76 -GV-LPTIAAESPKNLILVILDNGAY-GSTGNQPTPASRRTDLELVAKAAGIRNVEKVADEEELRDALK-AL-AMKGPTF 150 (181)
T ss_pred -hH-HHHHHHhCCCCeEEEEEeCCcc-ccccCcCCCCCCCCCHHHHHHHCCCCeEEEeCCHHHHHHHHH-HH-cCCCCEE
Confidence 22 23345556 59887764 4443 2111 1111 122333233323565555 789999999997 75 4689999
Q ss_pred EEec
Q 006251 620 FRFP 623 (654)
Q Consensus 620 ir~~ 623 (654)
|-..
T Consensus 151 i~v~ 154 (181)
T TIGR03846 151 IHVK 154 (181)
T ss_pred EEEE
Confidence 8654
No 204
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=85.13 E-value=3.7 Score=40.95 Aligned_cols=147 Identities=10% Similarity=0.034 Sum_probs=79.5
Q ss_pred HHHHHHHHHhhCCcEEEEecCccCCCC--hhhHHHhCCCCccccch-hH-HHHHHHHHHHHhc--CCeeEEee-hHHHHH
Q 006251 471 FAESLIKEAETDDKIVAIHAAMGGGTG--LNYFQKRFPDRCFDVGI-AE-QHAVTFAAGLASE--GVKPFCAI-YSSFLQ 543 (654)
Q Consensus 471 ~~~aL~~~~~~d~~vvvl~aDlg~s~~--l~~f~~~fp~R~id~GI-aE-~~mvg~AaGlA~~--G~~Pi~~t-fa~Fl~ 543 (654)
+.+.|.+.+.+| .++ ..|.|.... ...+.-..|.+++..+- .= -..+..|.|.++. +.+.++-+ -..|++
T Consensus 9 ~~~~l~~~l~~~-~iv--v~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~p~r~vv~i~GDG~f~m 85 (196)
T cd02013 9 VLRELEKAMPED-AIV--STDIGNICSVANSYLRFEKPRSFIAPLSFGNCGYALPAIIGAKAAAPDRPVVAIAGDGAWGM 85 (196)
T ss_pred HHHHHHHHCCCC-EEE--EECCcHHHHHHHHhcCcCCCCeEEcCCCCcccccHHHHHHHHHHhCCCCcEEEEEcchHHhc
Confidence 445555555433 233 334443221 12233344788886421 11 2244566666654 34444444 778876
Q ss_pred hHHHHHHHhhhcCCCCEEEEE-ecCCcc--C--C---CC-----CCCCChhhHHHHhcCCCCEEEecCCHHHHHHHHHHH
Q 006251 544 RGYDQVVHDVDLQKLPVRFAM-DRAGLV--G--A---DG-----PTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATA 610 (654)
Q Consensus 544 ra~dQI~~~~a~~~lpV~~v~-~~~G~~--g--~---dG-----~tHq~~edla~~r~iPnl~V~~PsD~~E~~~ll~~a 610 (654)
.. ..+.. ++..++|++++. ...|+. . . .+ ..+. ..|.+-++.-=|+.-+.-.++.|+..+++.+
T Consensus 86 ~~-~eL~T-a~~~~lpvi~vV~NN~~yg~~~~~q~~~~~~~~~~~~~~-~~d~~~lA~a~G~~~~~v~~~~el~~al~~a 162 (196)
T cd02013 86 SM-MEIMT-AVRHKLPVTAVVFRNRQWGAEKKNQVDFYNNRFVGTELE-SESFAKIAEACGAKGITVDKPEDVGPALQKA 162 (196)
T ss_pred cH-HHHHH-HHHhCCCeEEEEEECchhHHHHHHHHHHcCCCcccccCC-CCCHHHHHHHCCCEEEEECCHHHHHHHHHHH
Confidence 44 33333 556689988876 444431 1 0 01 1111 1343333443477778888999999999999
Q ss_pred Hh--CCCCcEEEEec
Q 006251 611 AV--IDDRPSCFRFP 623 (654)
Q Consensus 611 l~--~~~~P~~ir~~ 623 (654)
++ +.++|++|-..
T Consensus 163 ~~~~~~~~p~liev~ 177 (196)
T cd02013 163 IAMMAEGKTTVIEIV 177 (196)
T ss_pred HhcCCCCCeEEEEEE
Confidence 75 15789988654
No 205
>PRK07524 hypothetical protein; Provisional
Probab=85.04 E-value=20 Score=41.30 Aligned_cols=117 Identities=17% Similarity=0.128 Sum_probs=73.5
Q ss_pred CCccccchhHHHHHHHHHHHHhc-CCeeEEee-hHHHHHhHHHHHHHhhhcCCCCEEEEEecCCc--cCCC-CCCCCChh
Q 006251 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGAD-GPTHCGAF 581 (654)
Q Consensus 507 ~R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~t-fa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~--~g~d-G~tHq~~e 581 (654)
=|++.+ -.|++.+.+|-|+|+. |...+|.. ..+=+..++.-| ..+...+.||+++...... .+.+ +..|+...
T Consensus 40 i~~i~~-~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~~~gi-~~A~~~~~Pvl~i~G~~~~~~~~~~~~~~~~~~d 117 (535)
T PRK07524 40 IRHVTP-RHEQGAGFMADGYARVSGKPGVCFIITGPGMTNIATAM-GQAYADSIPMLVISSVNRRASLGKGRGKLHELPD 117 (535)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHH-HHHHhcCCCEEEEeCCCChhhcCCCCcccccccc
Confidence 366766 8999999999999986 64445443 433233333333 4455678999988632221 2322 34555445
Q ss_pred hHHHHhcCCCCEEEecCCHHHHHHHHHHHHh----CCCCcEEEEecCCC
Q 006251 582 DVTFMSCLPNMVVMAPSDEAELMHMVATAAV----IDDRPSCFRFPRGN 626 (654)
Q Consensus 582 dla~~r~iPnl~V~~PsD~~E~~~ll~~al~----~~~~P~~ir~~r~~ 626 (654)
...+++.+-- ..+...++.++...++.|+. ...+|++|-+|+-.
T Consensus 118 ~~~l~~~~tk-~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 165 (535)
T PRK07524 118 QRAMVAGVAA-FSHTLMSAEDLPEVLARAFAVFDSARPRPVHIEIPLDV 165 (535)
T ss_pred HHHHhhhhce-eEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEEeCHhH
Confidence 6667776643 44566667777776665543 34689999999764
No 206
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=85.02 E-value=3.5 Score=41.22 Aligned_cols=148 Identities=14% Similarity=0.028 Sum_probs=80.6
Q ss_pred HHHHHHHHHhhCCcEEEEecCccCCCC--hhhHHHhCCCCccccch-hHHH-HHHHHHHHHhc-CCeeEEee--hHHHHH
Q 006251 471 FAESLIKEAETDDKIVAIHAAMGGGTG--LNYFQKRFPDRCFDVGI-AEQH-AVTFAAGLASE-GVKPFCAI--YSSFLQ 543 (654)
Q Consensus 471 ~~~aL~~~~~~d~~vvvl~aDlg~s~~--l~~f~~~fp~R~id~GI-aE~~-mvg~AaGlA~~-G~~Pi~~t--fa~Fl~ 543 (654)
+.+.|.+.+.+| .+++ .|.|...- ...+.-..|.++++.+- .=.+ .++.|.|.++. .-+|++.+ -..|++
T Consensus 13 ~~~~l~~~l~~d-~iiv--~d~G~~~~~~~~~~~~~~~~~~~~~~~~GsmG~~lpaaiGa~la~p~~~vv~i~GDG~f~m 89 (202)
T cd02006 13 VYEEMNKAFGRD-VRYV--TTIGLSQIAGAQMLHVYKPRHWINCGQAGPLGWTVPAALGVAAADPDRQVVALSGDYDFQF 89 (202)
T ss_pred HHHHHHhhCCCC-eEEE--ECCcHHHHHHHHhcCcCCCCeEEccCCccchhhhhHHHHhHHhhCCCCeEEEEEeChHhhc
Confidence 445555555543 3333 45443221 12333345788887642 2111 44566676655 23455554 778875
Q ss_pred hHHHHHHHhhhcCCCCEEEEEec-CCcc--C--C----CC----CCCCC---------hhhHHHHhcCCCCEEEecCCHH
Q 006251 544 RGYDQVVHDVDLQKLPVRFAMDR-AGLV--G--A----DG----PTHCG---------AFDVTFMSCLPNMVVMAPSDEA 601 (654)
Q Consensus 544 ra~dQI~~~~a~~~lpV~~v~~~-~G~~--g--~----dG----~tHq~---------~edla~~r~iPnl~V~~PsD~~ 601 (654)
..-| + ..+...++|++++.-. .|+. . . ++ ..+.. ..|.+-++.-=|+.-+.-.++.
T Consensus 90 ~~~e-L-~Ta~~~~lpviivV~NN~~yg~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~ 167 (202)
T cd02006 90 MIEE-L-AVGAQHRIPYIHVLVNNAYLGLIRQAQRAFDMDYQVNLAFENINSSELGGYGVDHVKVAEGLGCKAIRVTKPE 167 (202)
T ss_pred cHHH-H-HHHHHhCCCeEEEEEeCchHHHHHHHHHHhcCccccccccccccccccCCCCCCHHHHHHHCCCEEEEECCHH
Confidence 5423 2 3356678998887643 4331 0 0 00 01110 1233333333377888889999
Q ss_pred HHHHHHHHHHh---CCCCcEEEEec
Q 006251 602 ELMHMVATAAV---IDDRPSCFRFP 623 (654)
Q Consensus 602 E~~~ll~~al~---~~~~P~~ir~~ 623 (654)
|+..+++.++. ..++|++|-..
T Consensus 168 el~~al~~a~~~~~~~~~p~liev~ 192 (202)
T cd02006 168 ELAAAFEQAKKLMAEHRVPVVVEAI 192 (202)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEEE
Confidence 99999999974 25789888553
No 207
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=84.84 E-value=16 Score=42.22 Aligned_cols=115 Identities=14% Similarity=0.075 Sum_probs=72.3
Q ss_pred CCccccchhHHHHHHHHHHHHhc-CCeeEEee-hHHHHHhHHHHHHHhhhcCCCCEEEEEecCCc--cCCCCCCCCChhh
Q 006251 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFD 582 (654)
Q Consensus 507 ~R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~t-fa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~--~g~dG~tHq~~ed 582 (654)
=|++.+ ..|++.+.+|.|+|.. |...+|.+ ..+=+..++.-| ..+-..+.||+++...... .+. + .+|.+..
T Consensus 47 i~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~~~gi-~~A~~~~~Pvl~i~g~~~~~~~~~-~-~~q~~d~ 122 (557)
T PRK08199 47 IRVIVC-RQEGGAAMMAEAYGKLTGRPGICFVTRGPGATNASIGV-HTAFQDSTPMILFVGQVARDFRER-E-AFQEIDY 122 (557)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHH-HHHhhcCCCEEEEecCCccccCCC-C-cccccCH
Confidence 466666 8899999999999997 54444443 555444454443 3445678999988633222 122 2 2565666
Q ss_pred HHHHhcCCCCEEEecCCHHHHHHHHHHHHh----CCCCcEEEEecCCC
Q 006251 583 VTFMSCLPNMVVMAPSDEAELMHMVATAAV----IDDRPSCFRFPRGN 626 (654)
Q Consensus 583 la~~r~iPnl~V~~PsD~~E~~~ll~~al~----~~~~P~~ir~~r~~ 626 (654)
..+++.+-... +...++.++..+++.|+. ...+|++|-+|+..
T Consensus 123 ~~l~~~~tk~~-~~v~~~~~~~~~~~~A~~~A~~~~~GPV~l~iP~dl 169 (557)
T PRK08199 123 RRMFGPMAKWV-AEIDDAARIPELVSRAFHVATSGRPGPVVLALPEDV 169 (557)
T ss_pred HHhhhhhhcee-eecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhH
Confidence 67777665433 333566666665555543 34689999999754
No 208
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=84.50 E-value=17 Score=41.78 Aligned_cols=117 Identities=13% Similarity=0.091 Sum_probs=69.7
Q ss_pred CCccccchhHHHHHHHHHHHHhc-CCeeEEeehHHH-HHhHHHHHHHhhhcCCCCEEEEEecCCccC-CCCCCCCChhhH
Q 006251 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCAIYSSF-LQRGYDQVVHDVDLQKLPVRFAMDRAGLVG-ADGPTHCGAFDV 583 (654)
Q Consensus 507 ~R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~tfa~F-l~ra~dQI~~~~a~~~lpV~~v~~~~G~~g-~dG~tHq~~edl 583 (654)
=|++.+ -.|++++.+|.|+|.. |.-.+|...+.. +..++.-| ..+...+.||+++........ ..++.++.....
T Consensus 49 i~~i~~-~hE~~A~~~Adgyar~tg~~~v~~vt~gpG~~N~~~gi-a~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~d~~ 126 (530)
T PRK07092 49 FRYVLG-LQEAVVVGMADGYAQATGNAAFVNLHSAAGVGNAMGNL-FTAFKNHTPLVITAGQQARSILPFEPFLAAVQAA 126 (530)
T ss_pred CCEEEE-ccHHHHHHHHHHHHHHhCCceEEEeccCchHHHHHHHH-HHHhhcCCCEEEEecCCcccccCccchhcccCHH
Confidence 377755 8999999999999996 544444332222 23444433 344557899998863322211 123333334445
Q ss_pred HHHhcCCCCEEEecCCHHHHHHHHHHHHh----CCCCcEEEEecCCC
Q 006251 584 TFMSCLPNMVVMAPSDEAELMHMVATAAV----IDDRPSCFRFPRGN 626 (654)
Q Consensus 584 a~~r~iPnl~V~~PsD~~E~~~ll~~al~----~~~~P~~ir~~r~~ 626 (654)
.+++.+-...... .++.++..+++.|+. ...||+||-+|+..
T Consensus 127 ~l~~~~tk~~~~v-~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~d~ 172 (530)
T PRK07092 127 ELPKPYVKWSIEP-ARAEDVPAAIARAYHIAMQPPRGPVFVSIPYDD 172 (530)
T ss_pred Hhhcccccceeec-CCHHHHHHHHHHHHHHHhcCCCCcEEEEccHHH
Confidence 6777776544433 556666655555443 23589999999753
No 209
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=84.40 E-value=7.5 Score=45.12 Aligned_cols=148 Identities=14% Similarity=0.111 Sum_probs=84.9
Q ss_pred HHHHHHHHHhhCCcEEEEecCccCCCC--hhhHHHhCCCCccccch-hHHH-HHHHHHHHHhc--CCeeEEee-hHHHHH
Q 006251 471 FAESLIKEAETDDKIVAIHAAMGGGTG--LNYFQKRFPDRCFDVGI-AEQH-AVTFAAGLASE--GVKPFCAI-YSSFLQ 543 (654)
Q Consensus 471 ~~~aL~~~~~~d~~vvvl~aDlg~s~~--l~~f~~~fp~R~id~GI-aE~~-mvg~AaGlA~~--G~~Pi~~t-fa~Fl~ 543 (654)
+...|.+.+. ++.++ ..|.|.... ...+.-..|.++++.|- .=.+ .++.|.|.++. +.++++-+ -..|++
T Consensus 377 ~~~~l~~~l~--~~~ii-~~d~g~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lp~aiGa~la~p~~~vv~i~GDG~f~~ 453 (574)
T PRK06882 377 VVEAIYRLTN--GDAYV-ASDVGQHQMFAALHYPFDKPRRWINSGGAGTMGFGLPAAIGVKFAHPEATVVCVTGDGSIQM 453 (574)
T ss_pred HHHHHHhhcC--CCeEE-EecCchhHHHHHHhccccCCCcEEeCCCcccccchhHHHHHHHhhcCCCcEEEEEcchhhhc
Confidence 4444555442 33333 345443211 12333345788887542 3223 46778888776 34555555 788875
Q ss_pred hHHHHHHHhhhcCCCCEEEEEecCCccC---------CCCC---CC-CChhhHHHHhcCCCCEEEecCCHHHHHHHHHHH
Q 006251 544 RGYDQVVHDVDLQKLPVRFAMDRAGLVG---------ADGP---TH-CGAFDVTFMSCLPNMVVMAPSDEAELMHMVATA 610 (654)
Q Consensus 544 ra~dQI~~~~a~~~lpV~~v~~~~G~~g---------~dG~---tH-q~~edla~~r~iPnl~V~~PsD~~E~~~ll~~a 610 (654)
-. ..+ ..++..++|++++.-..|..+ .++. .+ +...|.+-+..-=|+.-+.-.+..|+..+++.+
T Consensus 454 ~~-~eL-~ta~~~~lpv~~vV~NN~~~~~i~~~q~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~~~eL~~al~~a 531 (574)
T PRK06882 454 NI-QEL-STAKQYDIPVVIVSLNNRFLGMVKQWQDLIYSGRHSQVYMNSLPDFAKLAEAYGHVGIQIDTPDELEEKLTQA 531 (574)
T ss_pred cH-HHH-HHHHHhCCCeEEEEEECchhHHHHHHHHHhcCCcccccCCCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHH
Confidence 44 333 446678999888774443211 1121 11 112354444444477778889999999999999
Q ss_pred HhCCCCcEEEEec
Q 006251 611 AVIDDRPSCFRFP 623 (654)
Q Consensus 611 l~~~~~P~~ir~~ 623 (654)
+...++|++|-..
T Consensus 532 ~~~~~~p~liev~ 544 (574)
T PRK06882 532 FSIKDKLVFVDVN 544 (574)
T ss_pred HhcCCCcEEEEEE
Confidence 8645789888543
No 210
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=84.28 E-value=15 Score=39.05 Aligned_cols=150 Identities=11% Similarity=0.113 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEecCccCCCChhhHHHhCCCCccccchhHHHHHHHHHHHHhcC-CeeEEee--hHHHHH
Q 006251 467 YTQYFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLASEG-VKPFCAI--YSSFLQ 543 (654)
Q Consensus 467 ~~~a~~~aL~~~~~~d~~vvvl~aDlg~s~~l~~f~~~fp~R~id~GIaE~~mvg~AaGlA~~G-~~Pi~~t--fa~Fl~ 543 (654)
...++.+++.++.-..++.+ +..|+|.+..+..+.+ +. .+.+. =-..+.+|.|..+.. -++++.+ -.+|+.
T Consensus 19 i~~~~~~a~~~l~~~p~d~i-vvsdiG~~~~~~~~~~--~~-~~~~~--mG~alp~AiGaklA~pd~~VVai~GDG~~~~ 92 (280)
T PRK11869 19 IRNALMKALSELNLKPRQVV-IVSGIGQAAKMPHYIN--VN-GFHTL--HGRAIPAATAVKATNPELTVIAEGGDGDMYA 92 (280)
T ss_pred HHHHHHHHHHHcCCCCCCEE-EEeCchHhhhHHHHcc--CC-CCCcc--cccHHHHHHHHHHHCCCCcEEEEECchHHhh
Confidence 44567777765533334444 4456665433322211 11 12111 112345566666553 2455554 677765
Q ss_pred hHHHHHHHhhhcCCCCEEEEEec-CCc--cC-CCCCC--------------CCChhhHHHHhcCCCCEEEe---cCCHHH
Q 006251 544 RGYDQVVHDVDLQKLPVRFAMDR-AGL--VG-ADGPT--------------HCGAFDVTFMSCLPNMVVMA---PSDEAE 602 (654)
Q Consensus 544 ra~dQI~~~~a~~~lpV~~v~~~-~G~--~g-~dG~t--------------Hq~~edla~~r~iPnl~V~~---PsD~~E 602 (654)
-++..+. .++..++||+++.-. .++ ++ ..-++ -....|+.-++.--|..-++ +.++.|
T Consensus 93 iG~~eL~-tA~r~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~g~~~~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~~~~~ 171 (280)
T PRK11869 93 EGGNHLI-HAIRRNPDITVLVHNNQVYGLTKGQASPTTLKGFKTPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIEE 171 (280)
T ss_pred CcHHHHH-HHHHhCcCcEEEEEECHHHhhhcceecCCCCCCcccccCCCCccCCCCCHHHHHHHCCCCEEEEeCCCCHHH
Confidence 5556654 456789998887633 322 21 11000 01112444444444555555 999999
Q ss_pred HHHHHHHHHhCCCCcEEEEecC
Q 006251 603 LMHMVATAAVIDDRPSCFRFPR 624 (654)
Q Consensus 603 ~~~ll~~al~~~~~P~~ir~~r 624 (654)
+..+++.|++ .++|++|-...
T Consensus 172 l~~~i~~Al~-~~Gp~lIeV~~ 192 (280)
T PRK11869 172 TKEILKEAIK-HKGLAIVDIFQ 192 (280)
T ss_pred HHHHHHHHHh-CCCCEEEEEEC
Confidence 9999999985 68999885533
No 211
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=84.18 E-value=17 Score=42.22 Aligned_cols=150 Identities=13% Similarity=0.085 Sum_probs=84.7
Q ss_pred HHHHHHHHhhC--CcEEEEecCccCCCC-hhhHHHhCCCCccccchhHHHHHHHHHHHHhc-CCeeEEee-hHHHHHhHH
Q 006251 472 AESLIKEAETD--DKIVAIHAAMGGGTG-LNYFQKRFPDRCFDVGIAEQHAVTFAAGLASE-GVKPFCAI-YSSFLQRGY 546 (654)
Q Consensus 472 ~~aL~~~~~~d--~~vvvl~aDlg~s~~-l~~f~~~fp~R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~t-fa~Fl~ra~ 546 (654)
.+.|.+.+++. +.|+.+..+- ... ++.+.+.-.=|++.+ --|++++.+|.|+|.. |...+|.+ +.+=+..++
T Consensus 13 ~~~i~~~L~~~Gv~~vFgipG~~--~~~l~dal~~~~~i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~~ 89 (566)
T PRK07282 13 SDLVLETLRDLGVDTIFGYPGGA--VLPLYDAIYNFEGIRHILA-RHEQGALHEAEGYAKSTGKLGVAVVTSGPGATNAI 89 (566)
T ss_pred HHHHHHHHHHcCCCEEEecCCcc--hHHHHHHHhhcCCceEEEe-cCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHH
Confidence 45555555554 3455443321 111 233422212378777 8999999999999986 75555544 544333444
Q ss_pred HHHHHhhhcCCCCEEEEEecCCccCCCCCCCCChhhHHHHhcCCCCEEEecCCHHHHHHHHHHHHhC----CCCcEEEEe
Q 006251 547 DQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRF 622 (654)
Q Consensus 547 dQI~~~~a~~~lpV~~v~~~~G~~g~dG~tHq~~edla~~r~iPnl~V~~PsD~~E~~~ll~~al~~----~~~P~~ir~ 622 (654)
.-| ..+-..+.||+++..........-..+|..+..++++.+-.... ...++.++..++..|+.. ..+|+||-+
T Consensus 90 ~gl-a~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~itk~s~-~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~i 167 (566)
T PRK07282 90 TGI-ADAMSDSVPLLVFTGQVARAGIGKDAFQEADIVGITMPITKYNY-QIRETADIPRIITEAVHIATTGRPGPVVIDL 167 (566)
T ss_pred HHH-HHHhhcCCCEEEEecccccccCCCCCccccChhchhcCCCceeE-EcCCHHHHHHHHHHHHHHHhcCCCCeEEEeC
Confidence 433 33445689999996433321111123555555566666544333 344666666665555443 368999999
Q ss_pred cCCC
Q 006251 623 PRGN 626 (654)
Q Consensus 623 ~r~~ 626 (654)
|+.-
T Consensus 168 P~Dv 171 (566)
T PRK07282 168 PKDV 171 (566)
T ss_pred Chhh
Confidence 9864
No 212
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=83.92 E-value=16 Score=35.39 Aligned_cols=114 Identities=17% Similarity=0.130 Sum_probs=63.6
Q ss_pred hCCCCccccchhHHH---HHHHHHHHHhc--CCeeEEee-hHHHHHhHHHHHHHhhhcCCCCEEEEEec-CCcc--C---
Q 006251 504 RFPDRCFDVGIAEQH---AVTFAAGLASE--GVKPFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMDR-AGLV--G--- 571 (654)
Q Consensus 504 ~fp~R~id~GIaE~~---mvg~AaGlA~~--G~~Pi~~t-fa~Fl~ra~dQI~~~~a~~~lpV~~v~~~-~G~~--g--- 571 (654)
..|.+++..+- .. .+..|.|.++. ..+.++-+ -..|++-. ..+ ..+...++|++++.-. .++. .
T Consensus 38 ~~~~~~~~~~~--g~mG~~lp~aiGaala~~~~~vv~i~GDG~f~~~~-~el-~ta~~~~~p~~~iV~nN~~~~~~~~~~ 113 (178)
T cd02002 38 TRPGSYFTLRG--GGLGWGLPAAVGAALANPDRKVVAIIGDGSFMYTI-QAL-WTAARYGLPVTVVILNNRGYGALRSFL 113 (178)
T ss_pred CCCCCeeccCC--ccccchHHHHHHHHhcCCCCeEEEEEcCchhhccH-HHH-HHHHHhCCCeEEEEEcCccHHHHHHHH
Confidence 34778876533 22 23456666654 34444444 67776433 333 3345568998887643 3321 0
Q ss_pred ----CC--------CC-CCCChhhHHHHhcCCCCEEEecCCHHHHHHHHHHHHhCCCCcEEEEe
Q 006251 572 ----AD--------GP-THCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRF 622 (654)
Q Consensus 572 ----~d--------G~-tHq~~edla~~r~iPnl~V~~PsD~~E~~~ll~~al~~~~~P~~ir~ 622 (654)
.+ +. ......|++-+..-=|+..+.-.++.|+...++.+.+ .++|++|-.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~-~~~p~vi~v 176 (178)
T cd02002 114 KRVGPEGPGENAPDGLDLLDPGIDFAAIAKAFGVEAERVETPEELDEALREALA-EGGPALIEV 176 (178)
T ss_pred HHHcCCCcccccccccccCCCCCCHHHHHHHcCCceEEeCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 00 00 0011133332232226667777889999999999975 678988753
No 213
>PRK08322 acetolactate synthase; Reviewed
Probab=83.81 E-value=18 Score=41.65 Aligned_cols=115 Identities=15% Similarity=0.041 Sum_probs=72.1
Q ss_pred CCccccchhHHHHHHHHHHHHhc-CCeeEEee-hHHHHHhHHHHHHHhhhcCCCCEEEEEecCCc--cCCCCCCCCChhh
Q 006251 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFD 582 (654)
Q Consensus 507 ~R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~t-fa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~--~g~dG~tHq~~ed 582 (654)
=|++.+ ..|++++.+|.|+|.. |...+|.+ ..+=+..++.-| .++-..+.||+++...... .+. + .||....
T Consensus 39 i~~i~~-~hE~~A~~~A~gyar~tg~~gv~~~t~GpG~~N~~~~i-~~A~~~~~Pll~i~g~~~~~~~~~-~-~~q~~d~ 114 (547)
T PRK08322 39 IKLILT-RHEQGAAFMAATYGRLTGKAGVCLSTLGPGATNLVTGV-AYAQLGGMPMVAITGQKPIKRSKQ-G-SFQIVDV 114 (547)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHhhCCCEEEEECCCccHhHHHHHH-HHHhhcCCCEEEEeccccccccCC-C-ccccccH
Confidence 366665 8999999999999997 65444443 444333444443 3455678999988632221 122 2 3555555
Q ss_pred HHHHhcCCCCEEEecCCHHHHHHHHHHHHh----CCCCcEEEEecCCC
Q 006251 583 VTFMSCLPNMVVMAPSDEAELMHMVATAAV----IDDRPSCFRFPRGN 626 (654)
Q Consensus 583 la~~r~iPnl~V~~PsD~~E~~~ll~~al~----~~~~P~~ir~~r~~ 626 (654)
..+++.+-. ..+...++.++..+++.|+. ...+|++|-+|+..
T Consensus 115 ~~~~~~~tk-~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv 161 (547)
T PRK08322 115 VAMMAPLTK-WTRQIVSPDNIPEVVREAFRLAEEERPGAVHLELPEDI 161 (547)
T ss_pred HHHhhhhee-EEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChhh
Confidence 566776553 34556667776666655443 24689999999864
No 214
>PRK07586 hypothetical protein; Validated
Probab=83.76 E-value=25 Score=40.21 Aligned_cols=117 Identities=15% Similarity=0.071 Sum_probs=68.8
Q ss_pred CCccccchhHHHHHHHHHHHHhc-CCeeEEe-ehHHHHHhHHHHHHHhhhcCCCCEEEEEecCCccCCCCCCCCChhhHH
Q 006251 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVT 584 (654)
Q Consensus 507 ~R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~-tfa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~~g~dG~tHq~~edla 584 (654)
=|++.+ --|++.+.+|.|+|.. |...+|. ++.+=+..++--| .++...+.||+++..........-..||......
T Consensus 40 i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~~gl-~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~ 117 (514)
T PRK07586 40 MRCVLG-LFEGVATGAADGYARMAGKPAATLLHLGPGLANGLANL-HNARRARTPIVNIVGDHATYHRKYDAPLTSDIEA 117 (514)
T ss_pred CeEEEe-ccHHHHHHHHHHHHHHHCCCEEEEecccHHHHHHHHHH-HHHHhcCCCEEEEecCCchhccCCCcccccchhh
Confidence 367776 8999999999999987 6544443 3544333444333 3345678999988633221111112255445555
Q ss_pred HHhcCCCCEEEecCCHHHHHHHH----HHHHhCCCCcEEEEecCCC
Q 006251 585 FMSCLPNMVVMAPSDEAELMHMV----ATAAVIDDRPSCFRFPRGN 626 (654)
Q Consensus 585 ~~r~iPnl~V~~PsD~~E~~~ll----~~al~~~~~P~~ir~~r~~ 626 (654)
+++.+-- ..+...++.++..++ +.|.....+||||-+|+.-
T Consensus 118 ~~~~vtk-~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~Dv 162 (514)
T PRK07586 118 LARPVSG-WVRRSESAADVAADAAAAVAAARGAPGQVATLILPADV 162 (514)
T ss_pred hhccccc-eeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEeccch
Confidence 5555532 234455555555544 4444334689999999864
No 215
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=83.68 E-value=14 Score=42.97 Aligned_cols=117 Identities=16% Similarity=0.102 Sum_probs=71.9
Q ss_pred CCccccchhHHHHHHHHHHHHhc-CCeeEEe-ehHHHHHhHHHHHHHhhhcCCCCEEEEEecCCccCCCCCCCCChhhHH
Q 006251 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVT 584 (654)
Q Consensus 507 ~R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~-tfa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~~g~dG~tHq~~edla 584 (654)
=|++.+ ..|++++.+|.|+|+. |...+|. ++.+=+..++.-| ..+...+.||+++.........+-..+|.+...+
T Consensus 52 i~~i~~-~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~l~gl-~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~ 129 (564)
T PRK08155 52 IRHILA-RHEQGAGFIAQGMARTTGKPAVCMACSGPGATNLVTAI-ADARLDSIPLVCITGQVPASMIGTDAFQEVDTYG 129 (564)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHcCCCeEEEECCCCcHHHHHHHH-HHHHhcCCCEEEEeccCCcccccCCCccccchhh
Confidence 477775 8999999999999997 5433444 3544344444443 3455679999988633222111112355555555
Q ss_pred HHhcCCCCEEEecCCHHHHHHHHHHHHhC----CCCcEEEEecCCC
Q 006251 585 FMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRGN 626 (654)
Q Consensus 585 ~~r~iPnl~V~~PsD~~E~~~ll~~al~~----~~~P~~ir~~r~~ 626 (654)
+++.+--.. +.-.++.++..+++.|++. ..+|++|-+|+..
T Consensus 130 ~~~~~tk~~-~~v~~~~~~~~~i~~A~~~a~~~~~GPV~i~iP~Dv 174 (564)
T PRK08155 130 ISIPITKHN-YLVRDIEELPQVISDAFRIAQSGRPGPVWIDIPKDV 174 (564)
T ss_pred hhhccceEE-EEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhH
Confidence 666654432 3334677777766655542 3589999999753
No 216
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=83.46 E-value=26 Score=37.28 Aligned_cols=146 Identities=12% Similarity=0.103 Sum_probs=78.4
Q ss_pred HHHHHHHHHHhhCCcEEEEecCccCCCChhhHHHhC-CCCcc-ccchhHHHHHHHHHHHHhc--CCeeEEee-hHHHHHh
Q 006251 470 YFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQKRF-PDRCF-DVGIAEQHAVTFAAGLASE--GVKPFCAI-YSSFLQR 544 (654)
Q Consensus 470 a~~~aL~~~~~~d~~vvvl~aDlg~s~~l~~f~~~f-p~R~i-d~GIaE~~mvg~AaGlA~~--G~~Pi~~t-fa~Fl~r 544 (654)
.+.++|.+.....++++ +..|+|.+... ..-+ +++++ -.| ..+.+|.|.++. +.+.++-+ -.+|+.-
T Consensus 30 ~v~~al~e~~~~~~d~i-vvsdiGc~~~~---~~~~~~~~~~~~~G----~alPaAiGaklA~Pdr~VV~i~GDG~f~~~ 101 (277)
T PRK09628 30 SIIRAIDKLGWNMDDVC-VVSGIGCSGRF---SSYVNCNTVHTTHG----RAVAYATGIKLANPDKHVIVVSGDGDGLAI 101 (277)
T ss_pred HHHHHHHHhcCCCCCEE-EEeCcCHHHHh---hccCCCCceeeccc----cHHHHHHHHHHHCCCCeEEEEECchHHHHh
Confidence 45566665542334444 34576643211 1112 33433 222 456677777665 44444444 6777542
Q ss_pred HHHHHHHhhhcCCCCEEEEEecCCccCCCCCC---------------C---CChhhHHHHhcCCCCEE---EecCCHHHH
Q 006251 545 GYDQVVHDVDLQKLPVRFAMDRAGLVGADGPT---------------H---CGAFDVTFMSCLPNMVV---MAPSDEAEL 603 (654)
Q Consensus 545 a~dQI~~~~a~~~lpV~~v~~~~G~~g~dG~t---------------H---q~~edla~~r~iPnl~V---~~PsD~~E~ 603 (654)
. .+-.-.++..++||+++.-..+..|--+.+ + ....|++-++.--|..- ....++.|+
T Consensus 102 g-~~el~ta~r~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g~~~~~~~~g~~~~~~D~~~lA~a~G~~~va~~~v~~~~el 180 (277)
T PRK09628 102 G-GNHTIHGCRRNIDLNFILINNFIYGLTNSQTSPTTPKGMWTVTAQYGNIDPTFDACKLATAAGASFVARESVIDPQKL 180 (277)
T ss_pred h-HHHHHHHHHhCcCeEEEEEEChHHhcceecccCCCCCCceeeeccCCCcCCCCCHHHHHHHCCCceEEEEccCCHHHH
Confidence 2 222233567899998887444332211100 0 01123333333335543 578999999
Q ss_pred HHHHHHHHhCCCCcEEEEecCC
Q 006251 604 MHMVATAAVIDDRPSCFRFPRG 625 (654)
Q Consensus 604 ~~ll~~al~~~~~P~~ir~~r~ 625 (654)
+.+++.|++ .++|++|-....
T Consensus 181 ~~al~~Al~-~~Gp~lIeV~~~ 201 (277)
T PRK09628 181 EKLLVKGFS-HKGFSFFDVFSN 201 (277)
T ss_pred HHHHHHHHh-CCCCEEEEEcCC
Confidence 999999985 689999865443
No 217
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=83.43 E-value=19 Score=36.08 Aligned_cols=143 Identities=17% Similarity=0.159 Sum_probs=76.0
Q ss_pred HHHHHHHHhhCCcEEEEecCccCCCC-h-hhHHHhCCCCccccchhHHHHH----HHHHHHHhcC-CeeEEee--hHHHH
Q 006251 472 AESLIKEAETDDKIVAIHAAMGGGTG-L-NYFQKRFPDRCFDVGIAEQHAV----TFAAGLASEG-VKPFCAI--YSSFL 542 (654)
Q Consensus 472 ~~aL~~~~~~d~~vvvl~aDlg~s~~-l-~~f~~~fp~R~id~GIaE~~mv----g~AaGlA~~G-~~Pi~~t--fa~Fl 542 (654)
.+.|.+.+.+| .+++ .|.|.... + ..+.-+.|.+++..+- .+.+ +.|.|.++.. -++++.+ -..|+
T Consensus 5 ~~~l~~~l~~~-~ivv--~d~G~~~~~~~~~~~~~~~~~~~~~~~--~gsmG~~lpaAiGa~la~p~~~vv~i~GDGsf~ 79 (205)
T cd02003 5 LGALNEAIGDD-DVVI--NAAGSLPGDLHKLWRARTPGGYHLEYG--YSCMGYEIAAGLGAKLAKPDREVYVLVGDGSYL 79 (205)
T ss_pred HHHHHHhCCCC-CEEE--ECCCcchHHHHHhCCcCCCCcEEcCCC--cchhhhHHHHHHHHHHhCCCCeEEEEEccchhh
Confidence 34455555433 3433 34443221 1 2223345788886522 3333 4555655542 2444444 67787
Q ss_pred HhHHHHHHHhhhcCCCCEEEEE-ecCCcc---------CCC--CCCCC-------------ChhhHHHHhcCCCCEEEec
Q 006251 543 QRGYDQVVHDVDLQKLPVRFAM-DRAGLV---------GAD--GPTHC-------------GAFDVTFMSCLPNMVVMAP 597 (654)
Q Consensus 543 ~ra~dQI~~~~a~~~lpV~~v~-~~~G~~---------g~d--G~tHq-------------~~edla~~r~iPnl~V~~P 597 (654)
.-. .. +..++..++|++++. ...|+. +.. +..+. ...|..-+..-=|+..+.-
T Consensus 80 m~~-~e-L~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v 157 (205)
T cd02003 80 MLH-SE-IVTAVQEGLKIIIVLFDNHGFGCINNLQESTGSGSFGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKV 157 (205)
T ss_pred ccH-HH-HHHHHHcCCCCEEEEEECCccHHHHHHHHHhcCccccchhcccccccccccCCCCCCCHHHHHHhCCCEEEEE
Confidence 533 22 233556788987765 444431 100 10000 1124333333337777788
Q ss_pred CCHHHHHHHHHHHHhCCCCcEEEEe
Q 006251 598 SDEAELMHMVATAAVIDDRPSCFRF 622 (654)
Q Consensus 598 sD~~E~~~ll~~al~~~~~P~~ir~ 622 (654)
.++.|+..+++.++ ..++|++|-.
T Consensus 158 ~~~~el~~al~~a~-~~~gp~lIeV 181 (205)
T cd02003 158 KTIEELKAALAKAK-ASDRTTVIVI 181 (205)
T ss_pred CCHHHHHHHHHHHH-hCCCCEEEEE
Confidence 99999999999997 4689988754
No 218
>PRK05858 hypothetical protein; Provisional
Probab=83.39 E-value=19 Score=41.58 Aligned_cols=118 Identities=17% Similarity=0.117 Sum_probs=73.3
Q ss_pred CCCccccchhHHHHHHHHHHHHhc-CCeeEEe-ehHHHHHhHHHHHHHhhhcCCCCEEEEEecCCccCCCCCCCCChhhH
Q 006251 506 PDRCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDV 583 (654)
Q Consensus 506 p~R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~-tfa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~~g~dG~tHq~~edl 583 (654)
.=|++.+ ..|++++.+|-|+|.. |...+|. +..+=+..++.-| ..+...+.||+++.........+-..+|.....
T Consensus 42 ~i~~i~~-rhE~~A~~~AdGyar~tg~~gv~~~t~GpG~~n~~~~i-~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~ 119 (542)
T PRK05858 42 GIRLIDV-RHEQTAAFAAEAWAKLTRVPGVAVLTAGPGVTNGMSAM-AAAQFNQSPLVVLGGRAPALRWGMGSLQEIDHV 119 (542)
T ss_pred CCCEEee-ccHHHHHHHHHHHHHhcCCCeEEEEcCCchHHHHHHHH-HHHHhcCCCEEEEeCCCCcccCCCCCCcccchh
Confidence 3577776 8999999999999998 5433333 2433233333333 445567999998863332211122346666666
Q ss_pred HHHhcCCCCEEEecCCHHHHHHHHHHHH----hCCCCcEEEEecCCC
Q 006251 584 TFMSCLPNMVVMAPSDEAELMHMVATAA----VIDDRPSCFRFPRGN 626 (654)
Q Consensus 584 a~~r~iPnl~V~~PsD~~E~~~ll~~al----~~~~~P~~ir~~r~~ 626 (654)
.+++.+-- ......++.++...++.|+ ....+||+|-+|+..
T Consensus 120 ~l~~~~tk-~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv 165 (542)
T PRK05858 120 PFVAPVTK-FAATAQSAENAGRLVDQALQAAVTPHRGPVFVDFPMDH 165 (542)
T ss_pred hhhhhhhc-eEEEeCCHHHHHHHHHHHHHHHcCCCCCeEEEEcChhh
Confidence 67777654 3455566777766655554 334689999999753
No 219
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=83.14 E-value=20 Score=41.58 Aligned_cols=116 Identities=14% Similarity=0.051 Sum_probs=74.7
Q ss_pred CCccccchhHHHHHHHHHHHHhc-CCeeEEee-hHHHHHhHHHHHHHhhhcCCCCEEEEEecCCccCCCCCCCCChhhHH
Q 006251 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVT 584 (654)
Q Consensus 507 ~R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~t-fa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~~g~dG~tHq~~edla 584 (654)
=|++.+ -.|++.+.+|.|+|+. |...+|.. +.+=+..++.-| ..+-..+.||+++..........-..+|.+...+
T Consensus 42 i~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~gl-a~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~ 119 (563)
T PRK08527 42 FKHILT-RHEQAAVHAADGYARASGKVGVAIVTSGPGFTNAVTGL-ATAYMDSIPLVLISGQVPNSLIGTDAFQEIDAVG 119 (563)
T ss_pred CeEEEe-ccHHHHHHHHHHHHhhhCCCEEEEECCCCcHHHHHHHH-HHHhhcCCCEEEEecCCCccccCCCCCcccchhh
Confidence 366666 8999999999999986 65555443 544333444443 3445678999988633322111112366666666
Q ss_pred HHhcCCCCEEEecCCHHHHHHHHHHHHhC----CCCcEEEEecCC
Q 006251 585 FMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (654)
Q Consensus 585 ~~r~iPnl~V~~PsD~~E~~~ll~~al~~----~~~P~~ir~~r~ 625 (654)
+++.+=. ..+...++.++..+++.|++. ..+|+||-+|..
T Consensus 120 ~~~~~tk-~s~~v~~~~~i~~~l~~A~~~a~s~~~GPV~l~iP~D 163 (563)
T PRK08527 120 ISRPCVK-HNYLVKSIEELPRILKEAFYIARSGRPGPVHIDIPKD 163 (563)
T ss_pred hhhcccc-eEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 7776643 345567888888887776643 447999999975
No 220
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=83.10 E-value=18 Score=42.09 Aligned_cols=146 Identities=15% Similarity=0.100 Sum_probs=82.6
Q ss_pred HHHHHHHHhhC--CcEEEEecCccCCCC-hhhHHHhCCCCccccchhHHHHHHHHHHHHhc-CCeeEEee-hHHHHHhHH
Q 006251 472 AESLIKEAETD--DKIVAIHAAMGGGTG-LNYFQKRFPDRCFDVGIAEQHAVTFAAGLASE-GVKPFCAI-YSSFLQRGY 546 (654)
Q Consensus 472 ~~aL~~~~~~d--~~vvvl~aDlg~s~~-l~~f~~~fp~R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~t-fa~Fl~ra~ 546 (654)
.+.|.+.+++. +.|+.+..+- ... ++.+.+ .+-+++.+ ..|++.+.+|.|+|.. |...+|.+ ..+=+..++
T Consensus 19 ~~~i~~~L~~~Gv~~vFg~pG~~--~~~l~~al~~-~~i~~i~~-~hE~~A~~~A~gyar~tg~~gv~~~t~GPG~~N~~ 94 (571)
T PRK07710 19 AQMLIEALEKEGVEVIFGYPGGA--VLPLYDALYD-CGIPHILT-RHEQGAIHAAEGYARISGKPGVVIATSGPGATNVV 94 (571)
T ss_pred HHHHHHHHHHcCCCEEEeCCCcc--hHHHHHHHHh-cCCcEEEe-CCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHH
Confidence 44455555544 3455443221 111 233432 35678866 9999999999999987 65445443 443333333
Q ss_pred HHHHHhhhcCCCCEEEEEecCCc--cCCCCCCCCChhhHHHHhcCCCCEEEecCCHHHHHHHHHHHHh----CCCCcEEE
Q 006251 547 DQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAV----IDDRPSCF 620 (654)
Q Consensus 547 dQI~~~~a~~~lpV~~v~~~~G~--~g~dG~tHq~~edla~~r~iPnl~V~~PsD~~E~~~ll~~al~----~~~~P~~i 620 (654)
.-| ..+-..+.||+++...... .+.+ .+|.++..++++.+--.. +...++.++..+++.|+. ...+|++|
T Consensus 95 ~gl-~~A~~~~~Pvl~ItG~~~~~~~~~~--~~q~~d~~~l~~~~tk~~-~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l 170 (571)
T PRK07710 95 TGL-ADAMIDSLPLVVFTGQVATSVIGSD--AFQEADIMGITMPVTKHN-YQVRKASDLPRIIKEAFHIATTGRPGPVLI 170 (571)
T ss_pred HHH-HHHhhcCCCEEEEeccCCccccCCC--CccccchhhhhhcccceE-EecCCHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 333 3344568999988632222 1222 255556666777664433 344555566555555443 23599999
Q ss_pred EecCC
Q 006251 621 RFPRG 625 (654)
Q Consensus 621 r~~r~ 625 (654)
-+|+.
T Consensus 171 ~iP~D 175 (571)
T PRK07710 171 DIPKD 175 (571)
T ss_pred EcChh
Confidence 99975
No 221
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=82.93 E-value=20 Score=42.03 Aligned_cols=149 Identities=13% Similarity=0.074 Sum_probs=84.9
Q ss_pred HHHHHHHHHhhCC--cEEEEecCccCCCC---hhhHHHhCCCCccccchhHHHHHHHHHHHHhc-CCeeEEee-hHHHHH
Q 006251 471 FAESLIKEAETDD--KIVAIHAAMGGGTG---LNYFQKRFPDRCFDVGIAEQHAVTFAAGLASE-GVKPFCAI-YSSFLQ 543 (654)
Q Consensus 471 ~~~aL~~~~~~d~--~vvvl~aDlg~s~~---l~~f~~~fp~R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~t-fa~Fl~ 543 (654)
..+.|.+.+++.. .|+.+.. +.- ++.+.+.-.=|++.+ --|++.+.+|.|+|+. |...+|.+ +.+=+.
T Consensus 13 ~a~~l~~~L~~~GV~~vFGvpG----~~~~~l~dal~~~~~i~~I~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~ 87 (595)
T PRK09107 13 GAEMVVQALKDQGVEHIFGYPG----GAVLPIYDEIFQQDDIQHILV-RHEQGAGHAAEGYARSTGKPGVVLVTSGPGAT 87 (595)
T ss_pred HHHHHHHHHHHCCCCEEEEccC----cchHHHHHHHhhcCCCeEEEE-CChHHHHHHHHHHHHHhCCCEEEEECCCccHh
Confidence 3566666666553 3444322 221 233422212477777 8999999999999975 76555554 544333
Q ss_pred hHHHHHHHhhhcCCCCEEEEEecCCccCCCCCCCCChhhHHHHhcCCCCEEEecCCHHHHHHHHHHHHhC----CCCcEE
Q 006251 544 RGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSC 619 (654)
Q Consensus 544 ra~dQI~~~~a~~~lpV~~v~~~~G~~g~dG~tHq~~edla~~r~iPnl~V~~PsD~~E~~~ll~~al~~----~~~P~~ 619 (654)
.++.-| ..+-..+.||+++..........-..+|.+...++++.+-- -.+...++.++..++..|++. ..+|+|
T Consensus 88 N~l~gi-a~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~vtk-~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~ 165 (595)
T PRK09107 88 NAVTPL-QDALMDSIPLVCITGQVPTHLIGSDAFQECDTVGITRPCTK-HNWLVKDVNDLARVIHEAFHVATSGRPGPVV 165 (595)
T ss_pred HHHHHH-HHHhhcCCCEEEEEcCCChhhcCCCCCcccchhhhhhhheE-EEEEeCCHHHHHHHHHHHHHHhcCCCCceEE
Confidence 343333 34445689999886332221111124665555555555432 233456677766666655532 368999
Q ss_pred EEecCCC
Q 006251 620 FRFPRGN 626 (654)
Q Consensus 620 ir~~r~~ 626 (654)
|-+|+.-
T Consensus 166 l~iP~Dv 172 (595)
T PRK09107 166 VDIPKDV 172 (595)
T ss_pred EecCCCh
Confidence 9999764
No 222
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=82.42 E-value=23 Score=41.61 Aligned_cols=117 Identities=19% Similarity=0.130 Sum_probs=72.7
Q ss_pred CCccccchhHHHHHHHHHHHHhc-CCeeEEee-hHHHHHhHHHHHHHhhhcCCCCEEEEEecCCccCCCCCCCCChhhHH
Q 006251 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVT 584 (654)
Q Consensus 507 ~R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~t-fa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~~g~dG~tHq~~edla 584 (654)
=+++.+ -.|++++.+|.|+|+. |...+|.. ..+=+..++.-| .++...+.||+++.............+|.+....
T Consensus 70 i~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~l~gl-~~A~~~~~PllvI~G~~~~~~~~~~~~q~~d~~~ 147 (612)
T PRK07789 70 VRHVLV-RHEQGAGHAAEGYAQATGRVGVCMATSGPGATNLVTPI-ADANMDSVPVVAITGQVGRGLIGTDAFQEADIVG 147 (612)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHH-HHHhhcCCCEEEEecCCCccccCCCcCcccchhh
Confidence 366665 8999999999999986 75555433 443333333333 4455678999998643332111112355555556
Q ss_pred HHhcCCCCEEEecCCHHHHHHHHHHHHhC----CCCcEEEEecCCC
Q 006251 585 FMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRGN 626 (654)
Q Consensus 585 ~~r~iPnl~V~~PsD~~E~~~ll~~al~~----~~~P~~ir~~r~~ 626 (654)
+++.+-. ..+...++.++..+++.|+.. ..+|++|-+|+..
T Consensus 148 l~~~~tk-~s~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~Dv 192 (612)
T PRK07789 148 ITMPITK-HNFLVTDADDIPRVIAEAFHIASTGRPGPVLVDIPKDA 192 (612)
T ss_pred hhhccee-EEEEcCCHHHHHHHHHHHHHHHhcCCCceEEEEEccch
Confidence 6666554 234456777777777666532 3689999999863
No 223
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=82.10 E-value=7.9 Score=36.74 Aligned_cols=101 Identities=17% Similarity=0.109 Sum_probs=60.4
Q ss_pred HHHHHHHHHhc--CCeeEEee-hHHHHHhHHHHHHHhhhcCCCCEEEEEecCCccCCCCC------------CCCChhhH
Q 006251 519 AVTFAAGLASE--GVKPFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGP------------THCGAFDV 583 (654)
Q Consensus 519 mvg~AaGlA~~--G~~Pi~~t-fa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~~g~dG~------------tHq~~edl 583 (654)
.++.|.|+++. +.+.++-+ -..|+. .+..+ ..+...++|++++....+..+..+. ...+..|+
T Consensus 51 ~~~~a~Gaa~a~~~~~vv~~~GDG~~~~-~~~~l-~ta~~~~~~~~~iv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 128 (168)
T cd00568 51 GLPAAIGAALAAPDRPVVCIAGDGGFMM-TGQEL-ATAVRYGLPVIVVVFNNGGYGTIRMHQEAFYGGRVSGTDLSNPDF 128 (168)
T ss_pred hHHHHHHHHHhCCCCcEEEEEcCcHHhc-cHHHH-HHHHHcCCCcEEEEEECCccHHHHHHHHHHcCCCcccccCCCCCH
Confidence 34566666665 34555555 677765 44443 4455678998887754432111000 11122343
Q ss_pred HHHhcCCCCEEEecCCHHHHHHHHHHHHhCCCCcEEEEe
Q 006251 584 TFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRF 622 (654)
Q Consensus 584 a~~r~iPnl~V~~PsD~~E~~~ll~~al~~~~~P~~ir~ 622 (654)
.-+..--|+..+...++.|+..+++.+. ..++|++|..
T Consensus 129 ~~~a~~~G~~~~~v~~~~~l~~a~~~a~-~~~~p~~i~v 166 (168)
T cd00568 129 AALAEAYGAKGVRVEDPEDLEAALAEAL-AAGGPALIEV 166 (168)
T ss_pred HHHHHHCCCeEEEECCHHHHHHHHHHHH-hCCCCEEEEE
Confidence 3333334788888888999999999996 5789998864
No 224
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=81.91 E-value=16 Score=42.32 Aligned_cols=152 Identities=14% Similarity=0.099 Sum_probs=87.7
Q ss_pred HHHHHHHHHHhhCC--cEEEEecCccCCCC-hhhHHHhCCCCccccchhHHHHHHHHHHHHhc-CCeeEE-eehHHHHHh
Q 006251 470 YFAESLIKEAETDD--KIVAIHAAMGGGTG-LNYFQKRFPDRCFDVGIAEQHAVTFAAGLASE-GVKPFC-AIYSSFLQR 544 (654)
Q Consensus 470 a~~~aL~~~~~~d~--~vvvl~aDlg~s~~-l~~f~~~fp~R~id~GIaE~~mvg~AaGlA~~-G~~Pi~-~tfa~Fl~r 544 (654)
-.++.|.+.+++.. .++.+..+- ... ++.+.+.-.=|++.+ .-|++++.+|-|+|+. |...+| .|+.+=+..
T Consensus 10 ~~a~~l~~~L~~~GV~~vFgvpG~~--~~~l~~~l~~~~~i~~v~~-~hE~~A~~aAdgyar~tg~~~v~~vt~GpG~~N 86 (568)
T PRK07449 10 LWAAVILEELTRLGVRHVVIAPGSR--STPLTLAAAEHPRLRLHTH-FDERSAGFLALGLAKASKRPVAVIVTSGTAVAN 86 (568)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCc--cHHHHHHHHhCCCcEEEee-cCcccHHHHHHHHHHhhCCCEEEEECCccHHHh
Confidence 45566666666653 344443220 011 133322111366665 7999999999999986 544333 346554445
Q ss_pred HHHHHHHhhhcCCCCEEEEEecCCccCCCCCCCCChhhHHHHhcCCCCEEEecCCHH-----HHHHHHHH---HHhCCCC
Q 006251 545 GYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEA-----ELMHMVAT---AAVIDDR 616 (654)
Q Consensus 545 a~dQI~~~~a~~~lpV~~v~~~~G~~g~dG~tHq~~edla~~r~iPnl~V~~PsD~~-----E~~~ll~~---al~~~~~ 616 (654)
++.-| ..+...+.||+++.........+-..||.+...++++.+-...|-.|.+.. .+..+++. +.....+
T Consensus 87 ~l~~i-~~A~~~~~Pvl~IsG~~~~~~~~~~~~q~~d~~~~~~~~t~~~v~~~~~~~~~~~~~~~~~~~a~~~a~~~~~G 165 (568)
T PRK07449 87 LYPAV-IEAGLTGVPLIVLTADRPPELRDCGANQAIDQLGLFGSYPFTSLALPEPTQDILAYWLVTTIDAALAAQTLQAG 165 (568)
T ss_pred hhHHH-HHHhhcCCcEEEEECCCCHHHhcCCCCceecHhhHhhhhhhhccCCCCCCchhHHHHHHHHHHHHHHhcCCCCC
Confidence 55443 445567899999863322211112236777778888888766666676621 12335555 4334679
Q ss_pred cEEEEecCC
Q 006251 617 PSCFRFPRG 625 (654)
Q Consensus 617 P~~ir~~r~ 625 (654)
|++|-+|.-
T Consensus 166 PV~i~iP~D 174 (568)
T PRK07449 166 PVHINCPFR 174 (568)
T ss_pred CEEEeCCCC
Confidence 999999975
No 225
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=81.77 E-value=9.7 Score=44.31 Aligned_cols=117 Identities=11% Similarity=0.023 Sum_probs=72.1
Q ss_pred CCccccchhHHHHHHHHHHHHhc-CCeeEEe-ehHHHHHhHHHHHHHhhhcCCCCEEEEEecCCccCCCCCCCCChhhHH
Q 006251 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVT 584 (654)
Q Consensus 507 ~R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~-tfa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~~g~dG~tHq~~edla 584 (654)
=|++.+ .-|++.+.+|.|+|.. |.-.+|. +..+-+..++.-| ..+...+.||+++.........+-..+|.+....
T Consensus 50 i~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~~~gl-~~A~~~~~Pvl~I~G~~~~~~~~~~~~Q~~d~~~ 127 (578)
T PRK06112 50 IRQIAY-RTENAGGAMADGYARVSGKVAVVTAQNGPAATLLVAPL-AEALKASVPIVALVQDVNRDQTDRNAFQELDHIA 127 (578)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHHhCCCEEEEeCCCCcHHHHHHHH-HHHhhcCCCEEEEecCCccccCCCCCccccChhh
Confidence 467766 7999999999999986 5443433 2445444444443 3455678999988633222111223466666666
Q ss_pred HHhcCCCCEEEecCCHHHHHHHHHHHH----hCCCCcEEEEecCCC
Q 006251 585 FMSCLPNMVVMAPSDEAELMHMVATAA----VIDDRPSCFRFPRGN 626 (654)
Q Consensus 585 ~~r~iPnl~V~~PsD~~E~~~ll~~al----~~~~~P~~ir~~r~~ 626 (654)
+++.+--. .+...++.++...++.|+ ....+|++|-+|..-
T Consensus 128 l~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~Dv 172 (578)
T PRK06112 128 LFQSCTKW-VRRVTVAERIDDYVDQAFTAATSGRPGPVVLLLPADL 172 (578)
T ss_pred hhccccce-EEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEcCHhH
Confidence 77776543 334455566555555444 334689999999763
No 226
>PRK06163 hypothetical protein; Provisional
Probab=81.64 E-value=63 Score=32.65 Aligned_cols=146 Identities=16% Similarity=0.152 Sum_probs=73.8
Q ss_pred HHHHHHHHHhhCCcEEEEecCccCCC-ChhhHHHhCCCCccccchhHHHHHHHHHHHHhcC-CeeEEee--hHHHHHhHH
Q 006251 471 FAESLIKEAETDDKIVAIHAAMGGGT-GLNYFQKRFPDRCFDVGIAEQHAVTFAAGLASEG-VKPFCAI--YSSFLQRGY 546 (654)
Q Consensus 471 ~~~aL~~~~~~d~~vvvl~aDlg~s~-~l~~f~~~fp~R~id~GIaE~~mvg~AaGlA~~G-~~Pi~~t--fa~Fl~ra~ 546 (654)
+-+.|.+.+.++ ++++ .|.|... .+-.. ...|.+++..| +=-..+..|.|.++.. -++++.+ -..|++-.
T Consensus 18 ~i~~l~~~l~~~-~~iv--~D~G~~~~~~~~~-~~~~~~~~~~G-sMG~glpaAiGaalA~p~r~Vv~i~GDG~f~m~~- 91 (202)
T PRK06163 18 LTCRLVAKLKDE-EAVI--GGIGNTNFDLWAA-GQRPQNFYMLG-SMGLAFPIALGVALAQPKRRVIALEGDGSLLMQL- 91 (202)
T ss_pred HHHHHHHhcCCC-CEEE--ECCCccHHHHHHh-hcCCCCeEeec-ccccHHHHHHHHHHhCCCCeEEEEEcchHHHHHH-
Confidence 444555555433 3433 3554311 11111 13466776422 1111233556666542 3445544 67776543
Q ss_pred HHHHHhhhcCCCCEEEEEe-cCCccCCCCCC--CCChhhHHHHhcCCCCE-EEecCCHHHHHHHHHHHHhCCCCcEEEEe
Q 006251 547 DQVVHDVDLQKLPVRFAMD-RAGLVGADGPT--HCGAFDVTFMSCLPNMV-VMAPSDEAELMHMVATAAVIDDRPSCFRF 622 (654)
Q Consensus 547 dQI~~~~a~~~lpV~~v~~-~~G~~g~dG~t--Hq~~edla~~r~iPnl~-V~~PsD~~E~~~ll~~al~~~~~P~~ir~ 622 (654)
..+...+.+.++|++++.- ..++.-..+.. +....|..-+..-=|+. -+.-.+..|+..+++.+++ .++|++|-.
T Consensus 92 ~eL~Ta~~~~~lpi~ivV~NN~~yg~~~~~~~~~~~~~Df~~lA~a~G~~~~~~v~~~~el~~al~~a~~-~~~p~lIeV 170 (202)
T PRK06163 92 GALGTIAALAPKNLTIIVMDNGVYQITGGQPTLTSQTVDVVAIARGAGLENSHWAADEAHFEALVDQALS-GPGPSFIAV 170 (202)
T ss_pred HHHHHHHHhcCCCeEEEEEcCCchhhcCCccCCCCCCCCHHHHHHHCCCceEEEeCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 2333333345678777664 44431111111 11223433333333665 5677899999999999975 689999865
Q ss_pred c
Q 006251 623 P 623 (654)
Q Consensus 623 ~ 623 (654)
.
T Consensus 171 ~ 171 (202)
T PRK06163 171 R 171 (202)
T ss_pred E
Confidence 4
No 227
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=81.60 E-value=11 Score=43.87 Aligned_cols=116 Identities=13% Similarity=0.032 Sum_probs=71.8
Q ss_pred CccccchhHHHHHHHHHHHHhc-CCeeEEee-hHHHHHhHHHHHHHhhhcCCCCEEEEEecCCccCCCCCCCCChhhHHH
Q 006251 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTF 585 (654)
Q Consensus 508 R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~t-fa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~~g~dG~tHq~~edla~ 585 (654)
|++.+ ..|++.+.+|.|+|+. |...++.+ +.+=+..++.-| ..+-..+.||+++.............+|.+...++
T Consensus 40 ~~i~~-~hE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~l~~i-~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l 117 (586)
T PRK06276 40 IHILT-RHEQAAAHAADGYARASGKVGVCVATSGPGATNLVTGI-ATAYADSSPVIALTGQVPTKLIGNDAFQEIDALGI 117 (586)
T ss_pred cEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHH-HHHHhcCCCEEEEeCCCCccccCCCCCccccHhhH
Confidence 66766 7999999999999986 64444433 444333444433 44556789999886332221112234666666667
Q ss_pred HhcCCCCEEEecCCHHHHHHHHHHHHhC----CCCcEEEEecCCC
Q 006251 586 MSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRGN 626 (654)
Q Consensus 586 ~r~iPnl~V~~PsD~~E~~~ll~~al~~----~~~P~~ir~~r~~ 626 (654)
++.+=.... .-.++.++..+++.|+.. ..+|+||-+|+..
T Consensus 118 ~~~~tk~s~-~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~Dv 161 (586)
T PRK06276 118 FMPITKHNF-QIKKPEEIPEIFRAAFEIAKTGRPGPVHIDLPKDV 161 (586)
T ss_pred HhhhcceEE-ecCCHHHHHHHHHHHHHHhcCCCCCcEEEEcChhH
Confidence 776654333 345566666666655542 3689999999753
No 228
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=81.37 E-value=23 Score=40.85 Aligned_cols=117 Identities=16% Similarity=0.065 Sum_probs=73.0
Q ss_pred CCccccchhHHHHHHHHHHHHhc-CCeeEEee-hHHHHHhHHHHHHHhhhcCCCCEEEEEecCCccCCCCCCCCChhhHH
Q 006251 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVT 584 (654)
Q Consensus 507 ~R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~t-fa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~~g~dG~tHq~~edla 584 (654)
=|++.+ ..|++.+.+|.|+|.. |...+|.+ +.+=+..++.-+ ..+-..+.||+++..........-..+|.+...+
T Consensus 39 i~~v~~-~hE~~A~~~Adgyar~sg~~gv~~~t~GpG~~n~~~~l-~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~ 116 (548)
T PRK08978 39 VEHLLC-RHEQGAAMAAIGYARATGKVGVCIATSGPGATNLITGL-ADALLDSVPVVAITGQVSSPLIGTDAFQEIDVLG 116 (548)
T ss_pred CeEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHH-HHHhhcCCCEEEEecCCCccccCCCCCcccchhc
Confidence 366666 8999999999999997 65545443 544333444433 3445678999998643332111112366666666
Q ss_pred HHhcCCCCEEEecCCHHHHHHHHHHHHhC----CCCcEEEEecCCC
Q 006251 585 FMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRGN 626 (654)
Q Consensus 585 ~~r~iPnl~V~~PsD~~E~~~ll~~al~~----~~~P~~ir~~r~~ 626 (654)
+++.+-...... .++.++..+++.|++. ..+|++|-+|+..
T Consensus 117 ~~~~~tk~~~~v-~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv 161 (548)
T PRK08978 117 LSLACTKHSFLV-QSLEELPEIMAEAFEIASSGRPGPVLVDIPKDI 161 (548)
T ss_pred cccCceeeEEEE-CCHHHHHHHHHHHHHHHhcCCCCcEEEecChhh
Confidence 677665543333 4677777666666542 3589999999753
No 229
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=80.57 E-value=14 Score=36.19 Aligned_cols=100 Identities=16% Similarity=0.133 Sum_probs=52.2
Q ss_pred HHHHHHHhcC-CeeEEee--hHHHHHhHHHHHHHhhhcCCCCEEEEE-ecCCccCCCCC-----------CCCChhhHHH
Q 006251 521 TFAAGLASEG-VKPFCAI--YSSFLQRGYDQVVHDVDLQKLPVRFAM-DRAGLVGADGP-----------THCGAFDVTF 585 (654)
Q Consensus 521 g~AaGlA~~G-~~Pi~~t--fa~Fl~ra~dQI~~~~a~~~lpV~~v~-~~~G~~g~dG~-----------tHq~~edla~ 585 (654)
+.|.|+++.. -++++.+ -..|++-.+..+ ..+...++|++++. +..++ |.-+. +.....|+.-
T Consensus 58 ~~AiGa~la~p~~~Vv~i~GDG~f~~~g~~eL-~ta~~~~l~i~vvV~nN~~~-g~~~~~~~~~~~~~~~~~~~~~d~~~ 135 (178)
T cd02008 58 GVAIGMAKASEDKKVVAVIGDSTFFHSGILGL-INAVYNKANITVVILDNRTT-AMTGGQPHPGTGKTLTEPTTVIDIEA 135 (178)
T ss_pred HHHhhHHhhCCCCCEEEEecChHHhhccHHHH-HHHHHcCCCEEEEEECCcce-eccCCCCCCCCcccccCCCCccCHHH
Confidence 3555555542 3455554 677765434444 33566789987776 33433 11111 1111123333
Q ss_pred HhcCCCCEEEecCCHHHH---HHHHHHHHhCCCCcEEEEec
Q 006251 586 MSCLPNMVVMAPSDEAEL---MHMVATAAVIDDRPSCFRFP 623 (654)
Q Consensus 586 ~r~iPnl~V~~PsD~~E~---~~ll~~al~~~~~P~~ir~~ 623 (654)
+..--|+.-+...|+.|+ ...++.+++ .++|++|...
T Consensus 136 ~a~a~G~~~~~v~~~~~l~~~~~al~~a~~-~~gp~lI~v~ 175 (178)
T cd02008 136 LVRAIGVKRVVVVDPYDLKAIREELKEALA-VPGVSVIIAK 175 (178)
T ss_pred HHHHCCCCEEEecCccCHHHHHHHHHHHHh-CCCCEEEEEe
Confidence 332225555555555555 478898864 6899988653
No 230
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=80.51 E-value=13 Score=43.27 Aligned_cols=114 Identities=18% Similarity=0.121 Sum_probs=71.6
Q ss_pred CccccchhHHHHHHHHHHHHhc-CCeeEEe-ehHHHHHhHHHHHHHhhhcCCCCEEEEEecCCc--cCCCCCCCCChhhH
Q 006251 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFDV 583 (654)
Q Consensus 508 R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~-tfa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~--~g~dG~tHq~~edl 583 (654)
|++.+ ..|++++.+|.|+|.. |...+|. +..+=+..++.-| ..+-..+.||+++...... .+.+ .+|.+...
T Consensus 45 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~l~gi-~~A~~~~~Pvl~i~G~~~~~~~~~~--~~q~~d~~ 120 (572)
T PRK06456 45 RHVLM-RHEQAAAHAADGYARASGVPGVCTATSGPGTTNLVTGL-ITAYWDSSPVIAITGQVPRSVMGKM--AFQEADAM 120 (572)
T ss_pred eEEEe-CcHHHHHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHH-HHHHhhCCCEEEEecCCCccccCCC--Cccccchh
Confidence 56665 8899999999999986 6555554 3655554554443 3445678999998633222 1322 24555555
Q ss_pred HHHhcCCCCEEEecCCHHHHHHHHHHHH----hCCCCcEEEEecCCC
Q 006251 584 TFMSCLPNMVVMAPSDEAELMHMVATAA----VIDDRPSCFRFPRGN 626 (654)
Q Consensus 584 a~~r~iPnl~V~~PsD~~E~~~ll~~al----~~~~~P~~ir~~r~~ 626 (654)
.+++.+--... ...++.++..+++.|+ ....+|++|-+|+..
T Consensus 121 ~i~~~~tk~~~-~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 166 (572)
T PRK06456 121 GVFENVTKYVI-GIKRIDEIPQWIKNAFYIATTGRPGPVVIDIPRDI 166 (572)
T ss_pred hhhhccceeEE-EeCCHHHHHHHHHHHHHHHhcCCCCcEEEecChhH
Confidence 66666654333 3356667666655554 335699999999753
No 231
>PRK08611 pyruvate oxidase; Provisional
Probab=80.09 E-value=30 Score=40.29 Aligned_cols=116 Identities=13% Similarity=-0.001 Sum_probs=71.0
Q ss_pred CCccccchhHHHHHHHHHHHHhc-CCeeEEee-hHHHHHhHHHHHHHhhhcCCCCEEEEEecCCccCCCCCCCCChhhHH
Q 006251 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVT 584 (654)
Q Consensus 507 ~R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~t-fa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~~g~dG~tHq~~edla 584 (654)
=|++.+ ..|++++.+|.|+|.. |...+|.+ +.+=+..++.-| ..+...+.||+++..........-..+|.+....
T Consensus 44 i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~l~gl-a~A~~~~~Pvl~ItG~~~~~~~~~~~~q~~d~~~ 121 (576)
T PRK08611 44 IKFIQV-RHEEVAALAAAAYAKLTGKIGVCLSIGGPGAIHLLNGL-YDAKMDHVPVLALAGQVTSDLLGTDFFQEVNLEK 121 (576)
T ss_pred CeEEEe-CcHHHHHHHHHHHHHHhCCceEEEECCCCcHHHHHHHH-HHHhhcCCCEEEEecCCcccccCCCCccccCHHH
Confidence 366664 8899999999999986 64444433 444333444433 3445578999998643332111112355555667
Q ss_pred HHhcCCCCEEEecCCHHHHHHHHHH----HHhCCCCcEEEEecCCC
Q 006251 585 FMSCLPNMVVMAPSDEAELMHMVAT----AAVIDDRPSCFRFPRGN 626 (654)
Q Consensus 585 ~~r~iPnl~V~~PsD~~E~~~ll~~----al~~~~~P~~ir~~r~~ 626 (654)
+++.+--. .+...++.++..++.. |.. ..+|++|-+|...
T Consensus 122 l~~~itk~-~~~v~~~~~~~~~l~~A~~~A~~-~~GPV~l~iP~Dv 165 (576)
T PRK08611 122 MFEDVAVY-NHQIMSAENLPEIVNQAIRTAYE-KKGVAVLTIPDDL 165 (576)
T ss_pred Hhhcccce-eEEeCCHHHHHHHHHHHHHHHhh-CCCCEEEEeChhh
Confidence 77876443 3345566666665554 443 4699999999864
No 232
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=79.48 E-value=16 Score=37.96 Aligned_cols=104 Identities=15% Similarity=0.192 Sum_probs=65.3
Q ss_pred HHHHHHHHhc------CCeeEEee-hHHHHH-hHHHHHHHhhhcCCCC-EEEEEecCCccCCCCCCCC--ChhhHH-HHh
Q 006251 520 VTFAAGLASE------GVKPFCAI-YSSFLQ-RGYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHC--GAFDVT-FMS 587 (654)
Q Consensus 520 vg~AaGlA~~------G~~Pi~~t-fa~Fl~-ra~dQI~~~~a~~~lp-V~~v~~~~G~~g~dG~tHq--~~edla-~~r 587 (654)
++.|.|+|+. ..+.+|-+ -..|.. ..++.+ ..++..++| ++++.+..++ +.+++++. ..+|++ .++
T Consensus 111 l~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~eal-~~a~~~~l~~li~vvdnN~~-~~~~~~~~~~~~~~~~~~~~ 188 (255)
T cd02012 111 LSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAA-SFAGHYKLDNLIAIVDSNRI-QIDGPTDDILFTEDLAKKFE 188 (255)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEECcccccccHHHHHH-HHHHHcCCCcEEEEEECCCc-cccCcHhhccCchhHHHHHH
Confidence 4566666654 45566655 666653 345554 456677886 7777776664 33455432 234433 344
Q ss_pred cCCCCEEEecC--CHHHHHHHHHHHHhCCCCcEEEEecCCC
Q 006251 588 CLPNMVVMAPS--DEAELMHMVATAAVIDDRPSCFRFPRGN 626 (654)
Q Consensus 588 ~iPnl~V~~Ps--D~~E~~~ll~~al~~~~~P~~ir~~r~~ 626 (654)
++ |+.++.-. |..++...++.+.+..++|++|......
T Consensus 189 a~-G~~~~~v~G~d~~~l~~al~~a~~~~~~P~~I~~~t~k 228 (255)
T cd02012 189 AF-GWNVIEVDGHDVEEILAALEEAKKSKGKPTLIIAKTIK 228 (255)
T ss_pred Hc-CCeEEEECCCCHHHHHHHHHHHHHcCCCCEEEEEEeec
Confidence 44 88888767 8999999999886543789988765443
No 233
>PRK08266 hypothetical protein; Provisional
Probab=79.46 E-value=31 Score=39.74 Aligned_cols=116 Identities=17% Similarity=0.129 Sum_probs=70.6
Q ss_pred CCccccchhHHHHHHHHHHHHhc-CCeeEEe-ehHHHHHhHHHHHHHhhhcCCCCEEEEEecCCc--cCCC-CCCCCChh
Q 006251 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGAD-GPTHCGAF 581 (654)
Q Consensus 507 ~R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~-tfa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~--~g~d-G~tHq~~e 581 (654)
=|++.+ ..|++++.+|-|+|+. |...+|. +..+=+..++.-| ..+...+.||+++...... .+.+ +.+|+...
T Consensus 44 i~~v~~-~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N~~~gi-~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d 121 (542)
T PRK08266 44 IRVIHT-RHEQAAGYMAFGYARSTGRPGVCSVVPGPGVLNAGAAL-LTAYGCNSPVLCLTGQIPSALIGKGRGHLHEMPD 121 (542)
T ss_pred CeEEee-ccHHHHHHHHHHHHHHhCCCeEEEECCCCcHHHHHHHH-HHHHhhCCCEEEEecCCChhhccCCCCcceeccc
Confidence 467776 8999999999999987 6443443 3444333444443 4455678999988632221 1222 23444446
Q ss_pred hHHHHhcCCCCEEEecCCHHHHHHHHH----HHHhCCCCcEEEEecCC
Q 006251 582 DVTFMSCLPNMVVMAPSDEAELMHMVA----TAAVIDDRPSCFRFPRG 625 (654)
Q Consensus 582 dla~~r~iPnl~V~~PsD~~E~~~ll~----~al~~~~~P~~ir~~r~ 625 (654)
...+++.+-.. .+.-.++.++..+++ .|.....+|++|-+|..
T Consensus 122 ~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~d 168 (542)
T PRK08266 122 QLATLRSFTKW-AERIEHPSEAPALVAEAFQQMLSGRPRPVALEMPWD 168 (542)
T ss_pred HhhHHhhhcce-EEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEeCHh
Confidence 66778876543 344444555555554 44333568999999975
No 234
>PRK08617 acetolactate synthase; Reviewed
Probab=79.30 E-value=28 Score=40.26 Aligned_cols=117 Identities=14% Similarity=0.040 Sum_probs=73.0
Q ss_pred CCccccchhHHHHHHHHHHHHhc-CCeeEEee-hHHHHHhHHHHHHHhhhcCCCCEEEEEecCCccCCCCCCCCChhhHH
Q 006251 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVT 584 (654)
Q Consensus 507 ~R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~t-fa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~~g~dG~tHq~~edla 584 (654)
=|++.+ ..|++.+.+|.|+|.. |...+|.+ ..+=+..++.-+ ..+...+.||+++..........-..||.+....
T Consensus 43 i~~i~~-~hE~~A~~~A~gyar~tg~~gv~~vt~GpG~~N~l~gl-~~A~~~~~PvlvisG~~~~~~~~~~~~q~~d~~~ 120 (552)
T PRK08617 43 PELIVT-RHEQNAAFMAAAIGRLTGKPGVVLVTSGPGVSNLATGL-VTATAEGDPVVAIGGQVKRADRLKRTHQSMDNVA 120 (552)
T ss_pred CCEEEe-ccHHHHHHHHHhHhhhcCCCEEEEECCCCcHhHhHHHH-HHHhhcCCCEEEEecCCcccccCCCCccccchhh
Confidence 467766 8999999999999997 54444443 444333344333 3445678999988632222111112477777777
Q ss_pred HHhcCCCCEEEecCCHHHHHHHHHHHHh----CCCCcEEEEecCCC
Q 006251 585 FMSCLPNMVVMAPSDEAELMHMVATAAV----IDDRPSCFRFPRGN 626 (654)
Q Consensus 585 ~~r~iPnl~V~~PsD~~E~~~ll~~al~----~~~~P~~ir~~r~~ 626 (654)
+++.+-- ..+.-.++.++..++..|++ ...+|++|-+|+..
T Consensus 121 l~~~~tk-~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv 165 (552)
T PRK08617 121 LFRPITK-YSAEVQDPDNLSEVLANAFRAAESGRPGAAFVSLPQDV 165 (552)
T ss_pred hhhhhcc-eEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEeChhhh
Confidence 7777754 34444566666666655543 24589999999763
No 235
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=79.09 E-value=29 Score=40.15 Aligned_cols=117 Identities=10% Similarity=-0.032 Sum_probs=68.8
Q ss_pred CCccccchhHHHHHHHHHHHHhc-CCeeEEe-ehHHHHHhHHHHHHHhhhcCCCCEEEEEecCCccCCCCCCCCChhhHH
Q 006251 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVT 584 (654)
Q Consensus 507 ~R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~-tfa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~~g~dG~tHq~~edla 584 (654)
=|++.+ -.|+++..+|.|+|.. |...+|. +..+=+..++.-| ..+-..+.||+++..........-.++|.+....
T Consensus 40 i~~v~~-~hE~~A~~mAdgyar~tgkpgv~~~t~GPG~~N~l~~l-~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~ 117 (549)
T PRK06457 40 VKYVQV-RHEEGAALAASVEAKITGKPSACMGTSGPGSIHLLNGL-YDAKMDHAPVIALTGQVESDMIGHDYFQEVNLTK 117 (549)
T ss_pred CeEEEe-CcHHHHHHHHHHHHHHhCCCeEEEeCCCCchhhhHHHH-HHHHhcCCCEEEEecCCCccccCCCcccccchhh
Confidence 455554 8999999999999997 5443433 2433233333333 3445678999988632221111122356666666
Q ss_pred HHhcCCCCEEEecCCHHHHHHHHHHHHh---CCCCcEEEEecCCC
Q 006251 585 FMSCLPNMVVMAPSDEAELMHMVATAAV---IDDRPSCFRFPRGN 626 (654)
Q Consensus 585 ~~r~iPnl~V~~PsD~~E~~~ll~~al~---~~~~P~~ir~~r~~ 626 (654)
+++.+--. .+...++.++..+++.|+. ...+|++|-+|...
T Consensus 118 l~~~vtk~-~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~Dv 161 (549)
T PRK06457 118 LFDDVAVF-NQILINPENAEYIIRRAIREAISKRGVAHINLPVDI 161 (549)
T ss_pred hhccceeE-EEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeCHhH
Confidence 66666442 3445555565555544432 24699999999754
No 236
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=78.59 E-value=33 Score=39.89 Aligned_cols=117 Identities=12% Similarity=0.061 Sum_probs=71.9
Q ss_pred CCccccchhHHHHHHHHHHHHhc-CCeeEEee-hHHHHHhHHHHHHHhhhcCCCCEEEEEecCCccCCCCCCCCChhhHH
Q 006251 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVT 584 (654)
Q Consensus 507 ~R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~t-fa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~~g~dG~tHq~~edla 584 (654)
=|++.+ -.|++++.+|.|+|+. |...+|.+ +.+=+..++.-| ..+-..+.||+++.............+|.....+
T Consensus 43 i~~v~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~l~gi-a~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~ 120 (572)
T PRK08979 43 IEHILV-RHEQAAVHMADGYARATGKVGVVLVTSGPGATNTITGI-ATAYMDSIPMVVLSGQVPSNLIGNDAFQECDMIG 120 (572)
T ss_pred CeEEEe-CcHHHHHHHHHHHHHHhCCCeEEEECCCchHhHHHHHH-HHHhhcCCCEEEEecCCCccccCCCCCcccchhH
Confidence 467776 8999999999999986 76555544 444333343333 3344568999988633322111112355555556
Q ss_pred HHhcCCCCEEEecCCHHHHHHHHHHHHh----CCCCcEEEEecCCC
Q 006251 585 FMSCLPNMVVMAPSDEAELMHMVATAAV----IDDRPSCFRFPRGN 626 (654)
Q Consensus 585 ~~r~iPnl~V~~PsD~~E~~~ll~~al~----~~~~P~~ir~~r~~ 626 (654)
+++.+--. .+...++.++...++.|+. ...+|+||-+|+.-
T Consensus 121 ~~~~itk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 165 (572)
T PRK08979 121 ISRPVVKH-SFLVKDAEDIPEIIKKAFYIASTGRPGPVVIDLPKDC 165 (572)
T ss_pred HhhhceeE-EEecCCHHHHHHHHHHHHHHHhCCCCCcEEEecCHhH
Confidence 66665432 3444567777776666653 24589999999753
No 237
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=78.57 E-value=15 Score=40.62 Aligned_cols=115 Identities=13% Similarity=0.054 Sum_probs=80.6
Q ss_pred CCccccchhHHHHHHHHHHHHhcCCeeEEeehHHHHHhHHHHHHHhhhcCCCCEEEEEe-cCCccCCCCCCCCChhhHHH
Q 006251 507 DRCFDVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMD-RAGLVGADGPTHCGAFDVTF 585 (654)
Q Consensus 507 ~R~id~GIaE~~mvg~AaGlA~~G~~Pi~~tfa~Fl~ra~dQI~~~~a~~~lpV~~v~~-~~G~~g~dG~tHq~~edla~ 585 (654)
..|+++ =+|.+.++++.|.++.|-+.+..|.+.=+..+.+. +-.++.+.+|++++.. ++| ....-|++..-.|+-.
T Consensus 48 ~~~vq~-EsE~~a~s~v~GA~~aGar~~TaTSg~Gl~Lm~E~-l~~a~~~~~P~Vi~~~~R~~-ps~g~p~~~dq~D~~~ 124 (365)
T COG0674 48 GVFVQM-ESEIGAISAVIGASYAGARAFTATSGQGLLLMAEA-LGLAAGTETPLVIVVAQRPL-PSTGLPIKGDQSDLMA 124 (365)
T ss_pred cEEEEe-ccHHHHHHHHHHHHhhCcceEeecCCccHHHHHHH-HHHHHhccCCeEEEEeccCc-CCCcccccccHHHHHH
Confidence 344444 57999999999999999999999965433344555 3567889999887753 444 3333458887789876
Q ss_pred HhcCCCCEEEecCCHHHHHHHHHHHHhC---CCCcEEEEecCC
Q 006251 586 MSCLPNMVVMAPSDEAELMHMVATAAVI---DDRPSCFRFPRG 625 (654)
Q Consensus 586 ~r~iPnl~V~~PsD~~E~~~ll~~al~~---~~~P~~ir~~r~ 625 (654)
.|.- +..+++=+|.+|+..+...|+.. ..-|+++.+..-
T Consensus 125 ~r~~-g~~~~~~~s~qEa~d~t~~Af~iAe~~~~Pvi~~~D~~ 166 (365)
T COG0674 125 ARDT-GFPILVSASVQEAFDLTLLAFNIAEKVLTPVIVLLDGF 166 (365)
T ss_pred HHcc-CceEEeeccHHHHHHHHHHHHHHHHHhcCCEEEeeccc
Confidence 6666 88887777999988755544432 345888875543
No 238
>PLN02470 acetolactate synthase
Probab=78.40 E-value=34 Score=39.93 Aligned_cols=114 Identities=16% Similarity=0.123 Sum_probs=72.1
Q ss_pred CCccccchhHHHHHHHHHHHHhc-CCeeEEee-hHHHHHhHHHHHHHhhhcCCCCEEEEEecCCc--cCCCCCCCCChhh
Q 006251 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFD 582 (654)
Q Consensus 507 ~R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~t-fa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~--~g~dG~tHq~~ed 582 (654)
=|++.+ --|++.+.+|.|+|.. |...+|.+ +.+=+..++.-| .++-..+.||+++...... .+. -.+|....
T Consensus 52 i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~l~gi-a~A~~~~~Pvl~I~G~~~~~~~~~--~~~q~~d~ 127 (585)
T PLN02470 52 IRNVLC-RHEQGEVFAAEGYAKASGKVGVCIATSGPGATNLVTGL-ADALLDSVPLVAITGQVPRRMIGT--DAFQETPI 127 (585)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHH-HHHHhcCCcEEEEecCCChhhcCC--CcCcccch
Confidence 467776 8899999999999986 65555543 554444444443 3444578999998632221 122 22555555
Q ss_pred HHHHhcCCCCEEEecCCHHHHHHHHHHHHhC----CCCcEEEEecCC
Q 006251 583 VTFMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (654)
Q Consensus 583 la~~r~iPnl~V~~PsD~~E~~~ll~~al~~----~~~P~~ir~~r~ 625 (654)
..+++.+-.. .+...++.++..+++.|+.. ..+||+|-+|..
T Consensus 128 ~~l~~~~tk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~D 173 (585)
T PLN02470 128 VEVTRSITKH-NYLVMDVEDIPRVIREAFFLASSGRPGPVLVDIPKD 173 (585)
T ss_pred hhhhhhheEE-EEEcCCHHHHHHHHHHHHHHhcCCCCCeEEEEecCc
Confidence 5566655432 23345777777777766542 369999999975
No 239
>PRK11269 glyoxylate carboligase; Provisional
Probab=78.17 E-value=33 Score=40.11 Aligned_cols=117 Identities=10% Similarity=0.008 Sum_probs=72.8
Q ss_pred CCccccchhHHHHHHHHHHHHhc--CCeeEEe-ehHHHHHhHHHHHHHhhhcCCCCEEEEEecCCccCCCCCCCCChhhH
Q 006251 507 DRCFDVGIAEQHAVTFAAGLASE--GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDV 583 (654)
Q Consensus 507 ~R~id~GIaE~~mvg~AaGlA~~--G~~Pi~~-tfa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~~g~dG~tHq~~edl 583 (654)
=|++.+ .-|++++.+|.|+|+. |...+|. +..+=+..++.-+ ..+...+.||+++..........-..+|.+...
T Consensus 43 i~~v~~-rhE~~A~~mAdGYar~t~g~~gv~~~t~GPG~~N~l~gl-~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~ 120 (591)
T PRK11269 43 IRHILA-RHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTDMITGL-YSASADSIPILCITGQAPRARLHKEDFQAVDIE 120 (591)
T ss_pred CcEEee-CCHHHHHHHHHHHHHHcCCCcEEEEECCCCcHHHHHHHH-HHHhhcCCCEEEEecCCCccccCCCcccccChh
Confidence 478777 8999999999999986 4444333 3555444444433 344567899998863322211111236666666
Q ss_pred HHHhcCCCCEEEecCCHHHHHHHHHHHHh----CCCCcEEEEecCCC
Q 006251 584 TFMSCLPNMVVMAPSDEAELMHMVATAAV----IDDRPSCFRFPRGN 626 (654)
Q Consensus 584 a~~r~iPnl~V~~PsD~~E~~~ll~~al~----~~~~P~~ir~~r~~ 626 (654)
.+++.+--. .+...++.++..+++.|+. ...||++|-+|+..
T Consensus 121 ~l~~~itk~-s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv 166 (591)
T PRK11269 121 SIAKPVTKW-AVTVREPALVPRVFQQAFHLMRSGRPGPVLIDLPFDV 166 (591)
T ss_pred hHhhcceeE-EEEcCCHHHHHHHHHHHHHHHhhCCCCeEEEEeChhh
Confidence 777765432 3445677777766665543 23589999999753
No 240
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=77.78 E-value=23 Score=35.47 Aligned_cols=98 Identities=9% Similarity=0.118 Sum_probs=57.2
Q ss_pred HHHHHHHHhc----C--CeeEEee-hHHHHH-hHHHHHHHhhhcCCCCEEEEEecCCccCCCCCCCCChhhHHHHhcCCC
Q 006251 520 VTFAAGLASE----G--VKPFCAI-YSSFLQ-RGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPN 591 (654)
Q Consensus 520 vg~AaGlA~~----G--~~Pi~~t-fa~Fl~-ra~dQI~~~~a~~~lpV~~v~~~~G~~g~dG~tHq~~edla~~r~iPn 591 (654)
+++|+|+|+. | .+.+|-+ -..|.. ..++.+ +.++..+.|++++....++. .++++- ...+ .++. -|
T Consensus 81 l~~A~G~Ala~k~~~~~~~vv~~~GDG~~~eG~~~Eal-~~A~~~~~~li~vvdnN~~~-~~~~~~-~~~~--~~~a-~G 154 (195)
T cd02007 81 ISAALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEAL-NNAGYLKSNMIVILNDNEMS-ISPNVG-TPGN--LFEE-LG 154 (195)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEEcccccccChHHHHH-HHHHHhCCCEEEEEECCCcc-cCCCCC-CHHH--HHHh-cC
Confidence 4556666653 3 3334333 444431 334543 45566689999998887752 345443 2222 3444 35
Q ss_pred CEE---EecCCHHHHHHHHHHHHhCCCCcEEEEecC
Q 006251 592 MVV---MAPSDEAELMHMVATAAVIDDRPSCFRFPR 624 (654)
Q Consensus 592 l~V---~~PsD~~E~~~ll~~al~~~~~P~~ir~~r 624 (654)
+.+ +...|..++..+++.+. ..++|++|....
T Consensus 155 ~~~~~~vdG~d~~~l~~a~~~a~-~~~~P~~I~~~T 189 (195)
T cd02007 155 FRYIGPVDGHNIEALIKVLKEVK-DLKGPVLLHVVT 189 (195)
T ss_pred CCccceECCCCHHHHHHHHHHHH-hCCCCEEEEEEE
Confidence 444 45567888888888875 467899986643
No 241
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=77.62 E-value=65 Score=31.97 Aligned_cols=114 Identities=15% Similarity=0.127 Sum_probs=61.0
Q ss_pred CCCccccchhHHHHHHHHHHHHhcC-CeeEEee--hHHHHHhHHHHHHHhhhcCCC-CEEEE-EecCCccCCCC-CCCCC
Q 006251 506 PDRCFDVGIAEQHAVTFAAGLASEG-VKPFCAI--YSSFLQRGYDQVVHDVDLQKL-PVRFA-MDRAGLVGADG-PTHCG 579 (654)
Q Consensus 506 p~R~id~GIaE~~mvg~AaGlA~~G-~~Pi~~t--fa~Fl~ra~dQI~~~~a~~~l-pV~~v-~~~~G~~g~dG-~tHq~ 579 (654)
|.+++..|-.=. .++.|.|+++.. -+|++.+ -..|++-. ..+ ..++..++ |++++ ....|+....+ .+...
T Consensus 41 ~~~~~~~g~mG~-~lpaAiGaala~p~~~Vv~i~GDG~f~m~~-~eL-~ta~~~~l~~i~ivV~NN~~yg~~~~~~~~~~ 117 (188)
T cd03371 41 AQDFLTVGSMGH-ASQIALGIALARPDRKVVCIDGDGAALMHM-GGL-ATIGGLAPANLIHIVLNNGAHDSVGGQPTVSF 117 (188)
T ss_pred cCceeecCcccc-HHHHHHHHHHhCCCCcEEEEeCCcHHHhhc-cHH-HHHHHcCCCCcEEEEEeCchhhccCCcCCCCC
Confidence 478886533222 346677776652 3455544 67776432 222 33445554 55554 45554311111 11111
Q ss_pred hhhHHHHhcCCCCEE-EecCCHHHHHHHHHHHHhCCCCcEEEEec
Q 006251 580 AFDVTFMSCLPNMVV-MAPSDEAELMHMVATAAVIDDRPSCFRFP 623 (654)
Q Consensus 580 ~edla~~r~iPnl~V-~~PsD~~E~~~ll~~al~~~~~P~~ir~~ 623 (654)
..|.+-+..--|+.- ....++.|+..+++.++. .++|++|...
T Consensus 118 ~~d~~~~A~a~G~~~~~~v~~~~el~~al~~a~~-~~~p~lIev~ 161 (188)
T cd03371 118 DVSLPAIAKACGYRAVYEVPSLEELVAALAKALA-ADGPAFIEVK 161 (188)
T ss_pred CCCHHHHHHHcCCceEEecCCHHHHHHHHHHHHh-CCCCEEEEEE
Confidence 123332333235553 466799999999999975 6789998654
No 242
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=77.31 E-value=20 Score=41.80 Aligned_cols=116 Identities=16% Similarity=0.103 Sum_probs=71.2
Q ss_pred CCccccchhHHHHHHHHHHHHhc-CCeeEEee-hHHHHHhHHHHHHHhhhcCCCCEEEEEecCCccCCCCCCCCChhhHH
Q 006251 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVT 584 (654)
Q Consensus 507 ~R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~t-fa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~~g~dG~tHq~~edla 584 (654)
=|++.+ -.|++.+.+|.|+|.. |...+|.+ ..+=+..++.-| .++...+.||+++....+........||.+....
T Consensus 40 i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~~~gl-a~A~~~~~Pvl~I~g~~~~~~~~~~~~Q~~d~~~ 117 (579)
T TIGR03457 40 IRFIPV-VHEQGAGHMADGFARVTGRMSMVIGQNGPGVTNCVTAI-AAAYWAHTPVVIVTPEAGTKTIGLGGFQEADQLP 117 (579)
T ss_pred CeEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHH-HHHhhcCCCEEEEeCCCccccCCCCCCcccchhh
Confidence 366666 8999999999999976 65555543 443333333333 3445578999999633332111122477666666
Q ss_pred HHhcCCCCEEEecCCHHHHHHHHH----HHHhCCCCcEEEEecCCC
Q 006251 585 FMSCLPNMVVMAPSDEAELMHMVA----TAAVIDDRPSCFRFPRGN 626 (654)
Q Consensus 585 ~~r~iPnl~V~~PsD~~E~~~ll~----~al~~~~~P~~ir~~r~~ 626 (654)
+++.+-.. .+...++.++..+++ .|.. ..+|+||-+|+..
T Consensus 118 l~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~-~~GPV~l~iP~Dv 161 (579)
T TIGR03457 118 MFQEFTKY-QGHVRHPSRMAEVLNRCFERAWR-EMGPAQLNIPRDY 161 (579)
T ss_pred hhhcceeE-EEecCCHHHHHHHHHHHHHHHhc-CCCCEEEEeCcch
Confidence 77766442 334456666555554 4443 4589999999864
No 243
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=77.28 E-value=24 Score=44.86 Aligned_cols=113 Identities=18% Similarity=0.107 Sum_probs=73.8
Q ss_pred CccccchhHHHHHHHHHHHHhcCCeeEEeehHHHHHhHHHHHHHhhhcCCCCEEEEE-ecCCccCCCCCCCCChhhHHHH
Q 006251 508 RCFDVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAM-DRAGLVGADGPTHCGAFDVTFM 586 (654)
Q Consensus 508 R~id~GIaE~~mvg~AaGlA~~G~~Pi~~tfa~Fl~ra~dQI~~~~a~~~lpV~~v~-~~~G~~g~dG~tHq~~edla~~ 586 (654)
.|+.+ =+|.+.++++.|.+..|.+.+..|-+.=+....+.+- .++-..+|+++.. .++| .+..+..|..--|+..+
T Consensus 53 ~~vq~-EsE~~A~~av~GA~~aGara~T~TSs~GL~LM~e~l~-~~ag~~~P~Vi~va~R~~-~~~~~~i~~dh~Dv~~~ 129 (1165)
T TIGR02176 53 KVVEM-QSEAGAAGAVHGALQTGALTTTFTASQGLLLMIPNMY-KIAGELLPCVFHVSARAI-AAHALSIFGDHQDVMAA 129 (1165)
T ss_pred eEEEc-cchHHHHHHHHhHhhcCCCEEEecChhHHHHHHHHHH-HHHhccCCEEEEEecCCC-CCCCCccCCCchHHHHh
Confidence 45554 4899999999999999998888774333334455543 3455689987765 3443 21122333333365444
Q ss_pred hcCCCCEEEecCCHHHHHHHHHHHHh---CCCCcEEEEecC
Q 006251 587 SCLPNMVVMAPSDEAELMHMVATAAV---IDDRPSCFRFPR 624 (654)
Q Consensus 587 r~iPnl~V~~PsD~~E~~~ll~~al~---~~~~P~~ir~~r 624 (654)
|.. |+.|++|++.+|+..+...|.. +...|+++.+.-
T Consensus 130 R~~-G~ivl~s~svQEa~D~al~A~~lAe~~~~Pvi~~~Dg 169 (1165)
T TIGR02176 130 RQT-GFAMLASSSVQEVMDLALVAHLATIEARVPFMHFFDG 169 (1165)
T ss_pred hcC-CeEEEeCCCHHHHHHHHHHHHHHHHhcCCCEEEEecC
Confidence 444 6799999999999886665532 356799887763
No 244
>PRK06154 hypothetical protein; Provisional
Probab=76.92 E-value=29 Score=40.39 Aligned_cols=149 Identities=11% Similarity=0.075 Sum_probs=79.6
Q ss_pred HHHHHHHHHhhCCcEEEEecCccCCCC--hhhHHHhCCCCccccch--hHHHHHHHHHHHHhc--CCeeEEee-hHHHHH
Q 006251 471 FAESLIKEAETDDKIVAIHAAMGGGTG--LNYFQKRFPDRCFDVGI--AEQHAVTFAAGLASE--GVKPFCAI-YSSFLQ 543 (654)
Q Consensus 471 ~~~aL~~~~~~d~~vvvl~aDlg~s~~--l~~f~~~fp~R~id~GI--aE~~mvg~AaGlA~~--G~~Pi~~t-fa~Fl~ 543 (654)
+.+.|.+.+..+ +.+ +..|.|.... ...+.-..|.+++..+- +=-..++.|.|.++. +.++++-+ -..|++
T Consensus 386 ~~~~l~~~l~~~-d~i-v~~D~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~la~p~r~Vv~i~GDG~f~m 463 (565)
T PRK06154 386 VVWELQHAVDIK-TVI-ITHDAGSPRDQLSPFYVASRPGSYLGWGKTTQLGYGLGLAMGAKLARPDALVINLWGDAAFGM 463 (565)
T ss_pred HHHHHHHhcCCC-CEE-EEECCcccHHHHHHhCCCCCCCeEEccCCCcccccHHHHHHHHHHhCCCCcEEEEEcchHHhc
Confidence 334444444322 333 3335443322 12333344788887542 111244555555555 34444444 788875
Q ss_pred hHHHHHHHhhhcCCCCEEEEEecCCccC-C------CCCCCCC---hhhHHHHhcCCCCEEEecCCHHHHHHHHHHHHh-
Q 006251 544 RGYDQVVHDVDLQKLPVRFAMDRAGLVG-A------DGPTHCG---AFDVTFMSCLPNMVVMAPSDEAELMHMVATAAV- 612 (654)
Q Consensus 544 ra~dQI~~~~a~~~lpV~~v~~~~G~~g-~------dG~tHq~---~edla~~r~iPnl~V~~PsD~~E~~~ll~~al~- 612 (654)
-.-| +..+...++|++++....+..| . .+..+.. ..|.+-+..==|+.-+.=.++.|+..+++.++.
T Consensus 464 ~~~E--L~Ta~r~~lpi~~vV~NN~~yg~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~g~~V~~~~el~~al~~a~~~ 541 (565)
T PRK06154 464 TGMD--FETAVRERIPILTILLNNFSMGGYDKVMPVSTTKYRATDISGDYAAIARALGGYGERVEDPEMLVPALLRALRK 541 (565)
T ss_pred cHHH--HHHHHHhCCCeEEEEEECCccceeehhhhhhcCcccccCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhh
Confidence 5433 3445667999888764433221 0 0111111 124333333337778888899999999999985
Q ss_pred -CCCCcEEEEec
Q 006251 613 -IDDRPSCFRFP 623 (654)
Q Consensus 613 -~~~~P~~ir~~ 623 (654)
..++|++|-..
T Consensus 542 ~~~~~p~lIev~ 553 (565)
T PRK06154 542 VKEGTPALLEVI 553 (565)
T ss_pred ccCCCeEEEEEE
Confidence 35789988654
No 245
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=76.71 E-value=16 Score=42.52 Aligned_cols=114 Identities=15% Similarity=0.165 Sum_probs=67.3
Q ss_pred CCCccccchhHHHHHH----HHHHHHhc--CCeeEEee-hHHHHHhHHHHHHHhhhcCCCCEEEEEecCCccCC------
Q 006251 506 PDRCFDVGIAEQHAVT----FAAGLASE--GVKPFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGA------ 572 (654)
Q Consensus 506 p~R~id~GIaE~~mvg----~AaGlA~~--G~~Pi~~t-fa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~~g~------ 572 (654)
|.+++..+- .+.+| .|.|.++. +.++++-+ -.+|++-+ ..+ ..++..++|++++.-..+..|.
T Consensus 398 ~~~~~~s~~--~gsmG~~~paAiGa~la~p~~~vv~i~GDGsf~~~~-~el-~Ta~~~~lpv~~vV~NN~~~g~i~~~q~ 473 (578)
T PRK06546 398 RRRVIGSFR--HGSMANALPHAIGAQLADPGRQVISMSGDGGLSMLL-GEL-LTVKLYDLPVKVVVFNNSTLGMVKLEML 473 (578)
T ss_pred CceEEccCC--cccccchhHHHHHHHHhCCCCcEEEEEcCchHhhhH-HHH-HHHHHhCCCeEEEEEECCccccHHHHHH
Confidence 566765432 23333 66666655 45555555 78887543 333 4567789998887643332220
Q ss_pred -CC-CCC---CChhhHHHHhcCCCCEEEecCCHHHHHHHHHHHHhCCCCcEEEEecC
Q 006251 573 -DG-PTH---CGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPR 624 (654)
Q Consensus 573 -dG-~tH---q~~edla~~r~iPnl~V~~PsD~~E~~~ll~~al~~~~~P~~ir~~r 624 (654)
.| +.+ ....|..-+..-=|..-+.-.++.|++.+++.+++ .++|++|-...
T Consensus 474 ~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~~~~el~~al~~a~~-~~gp~lIev~~ 529 (578)
T PRK06546 474 VDGLPDFGTDHPPVDYAAIAAALGIHAVRVEDPKDVRGALREAFA-HPGPALVDVVT 529 (578)
T ss_pred hcCCCcccccCCCCCHHHHHHHCCCeeEEeCCHHHHHHHHHHHHh-CCCCEEEEEEe
Confidence 11 111 12234443343336666777899999999999985 68999985543
No 246
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=76.70 E-value=22 Score=41.81 Aligned_cols=117 Identities=14% Similarity=0.053 Sum_probs=71.6
Q ss_pred CCccccchhHHHHHHHHHHHHhc-CCeeEEee-hHHHHHhHHHHHHHhhhcCCCCEEEEEecCCccCCCCCCCCChhhHH
Q 006251 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVT 584 (654)
Q Consensus 507 ~R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~t-fa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~~g~dG~tHq~~edla 584 (654)
=|++.+ --|+..+.+|.|+|.. |...+|.+ ..+=+..++.- +.++..-+.||+++..........-..+|......
T Consensus 61 i~~i~~-rhE~~Aa~aA~gyar~tgk~gv~~~t~GPG~~n~l~g-l~~A~~d~~Pvl~i~G~~~~~~~~~~~~Qe~d~~~ 138 (616)
T PRK07418 61 LKHILV-RHEQGAAHAADGYARATGKVGVCFGTSGPGATNLVTG-IATAQMDSVPMVVITGQVPRPAIGTDAFQETDIFG 138 (616)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHH-HHHHHhcCCCEEEEecCCCccccCCCCcccccHHH
Confidence 477777 8999999999999986 65555443 44433333333 24555678999988633322111112355455555
Q ss_pred HHhcCCCCEEEecCCHHHHHHHHHHHHh----CCCCcEEEEecCCC
Q 006251 585 FMSCLPNMVVMAPSDEAELMHMVATAAV----IDDRPSCFRFPRGN 626 (654)
Q Consensus 585 ~~r~iPnl~V~~PsD~~E~~~ll~~al~----~~~~P~~ir~~r~~ 626 (654)
+++.+-- ......++.++..+++.|++ ...+|++|.+|+..
T Consensus 139 ~~~~vtk-~~~~v~~~~~i~~~l~~A~~~A~~~~~GPv~l~iP~Dv 183 (616)
T PRK07418 139 ITLPIVK-HSYVVRDPSDMARIVAEAFHIASSGRPGPVLIDIPKDV 183 (616)
T ss_pred Hhhhcce-eEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEecchhh
Confidence 6665432 12346677777766665544 34599999999753
No 247
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=76.70 E-value=45 Score=38.88 Aligned_cols=115 Identities=17% Similarity=0.122 Sum_probs=72.0
Q ss_pred CCccccchhHHHHHHHHHHHHhc-CCeeEEee-hHHHHHhHHHHHHHhhhcCCCCEEEEEecCCc--cCCCCCCCCChhh
Q 006251 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFD 582 (654)
Q Consensus 507 ~R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~t-fa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~--~g~dG~tHq~~ed 582 (654)
-|++.+ -.|++.+.+|.|+|.. |...+|.+ +.+=+..++.-| ..+-..+.||+++...... .+.+ .+|.+..
T Consensus 53 i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~~~gl-a~A~~~~~Pvl~I~G~~~~~~~~~~--~~q~~d~ 128 (570)
T PRK06725 53 LKHILT-RHEQAAIHAAEGYARASGKVGVVFATSGPGATNLVTGL-ADAYMDSIPLVVITGQVATPLIGKD--GFQEADV 128 (570)
T ss_pred CcEEEe-cCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHH-HHHhhcCcCEEEEecCCCcccccCC--CCcccch
Confidence 477776 8999999999999986 65555443 544333444333 3344568999988633222 1222 3554555
Q ss_pred HHHHhcCCCCEEEecCCHHHHHHHHHHHHhC----CCCcEEEEecCCC
Q 006251 583 VTFMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRGN 626 (654)
Q Consensus 583 la~~r~iPnl~V~~PsD~~E~~~ll~~al~~----~~~P~~ir~~r~~ 626 (654)
..+++.+-.. .+...++.++..+++.|+.. ..||+||-+|+-.
T Consensus 129 ~~l~~~itk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv 175 (570)
T PRK06725 129 VGITVPVTKH-NYQVRDVNQLSRIVQEAFYIAESGRPGPVLIDIPKDV 175 (570)
T ss_pred hhhhhcccee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEccccch
Confidence 5566665432 34456777777777666532 4699999999754
No 248
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=76.68 E-value=59 Score=38.06 Aligned_cols=116 Identities=10% Similarity=0.013 Sum_probs=70.6
Q ss_pred CccccchhHHHHHHHHHHHHhcC-Cee-EEee-hHHHHHhHHHHHHHhhhcCCCCEEEEEecCCccCCCCCCCCChhhHH
Q 006251 508 RCFDVGIAEQHAVTFAAGLASEG-VKP-FCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVT 584 (654)
Q Consensus 508 R~id~GIaE~~mvg~AaGlA~~G-~~P-i~~t-fa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~~g~dG~tHq~~edla 584 (654)
|++.+ --|++++.+|-|+|... .+| +|.+ +.+=+..++.-| .++...+.||+++.............+|.+...+
T Consensus 43 ~~V~~-rhE~~A~~mAdgyaR~t~g~~gv~~~t~GpG~~N~~~gl-a~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~D~~~ 120 (588)
T TIGR01504 43 RHILA-RHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTDMITGL-YSASADSIPILCITGQAPRARLHKEDFQAVDIAA 120 (588)
T ss_pred cEEee-CCHHHHHHHHHHHHHhcCCCeEEEEECCCccHHHHHHHH-HHHhhcCCCEEEEecCCCccccCCCcccccCHHH
Confidence 56654 77999999999999853 444 4433 444233333333 3444578999998633322111122366655666
Q ss_pred HHhcCCCCEEEecCCHHHHHHHHHHHHh----CCCCcEEEEecCCC
Q 006251 585 FMSCLPNMVVMAPSDEAELMHMVATAAV----IDDRPSCFRFPRGN 626 (654)
Q Consensus 585 ~~r~iPnl~V~~PsD~~E~~~ll~~al~----~~~~P~~ir~~r~~ 626 (654)
+++.+=-. .+...++.++..+++.|+. ...||++|-+|+.-
T Consensus 121 ~~~~vtk~-~~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~Dv 165 (588)
T TIGR01504 121 IAKPVSKM-AVTVREAALVPRVLQQAFHLMRSGRPGPVLIDLPFDV 165 (588)
T ss_pred HhhhhceE-EEEcCCHHHHHHHHHHHHHHHccCCCCeEEEEeCcch
Confidence 77766532 3444567777777766654 34579999999864
No 249
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=76.17 E-value=31 Score=40.27 Aligned_cols=116 Identities=13% Similarity=0.026 Sum_probs=71.7
Q ss_pred CCccccchhHHHHHHHHHHHHhc-CCeeEEee-hHHHHHhHHHHHHHhhhcCCCCEEEEEecCCccCCCCCCCCChhhHH
Q 006251 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVT 584 (654)
Q Consensus 507 ~R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~t-fa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~~g~dG~tHq~~edla 584 (654)
=|++.+ --|++.+.+|-|+|.. |...+|.+ +.+=+..++.-| ..+-..+.||+++.........+-.++|.+....
T Consensus 39 i~~v~~-rhE~~A~~~Adgyar~tgk~gv~~~t~GPG~~n~~~~i-~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~id~~~ 116 (575)
T TIGR02720 39 IHYIQV-RHEEVGALAAAADAKLTGKIGVCFGSAGPGATHLLNGL-YDAKEDHVPVLALVGQVPTTGMNMDTFQEMNENP 116 (575)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHhhCCceEEEeCCCCcHHHHHHHH-HHHhhcCCCEEEEecCCccccCCCCCcceechhh
Confidence 467766 8899999999999986 55445443 544333444433 3444568999998643332222334466666666
Q ss_pred HHhcCCCCEEEecCCHHHH----HHHHHHHHhCCCCcEEEEecCCC
Q 006251 585 FMSCLPNMVVMAPSDEAEL----MHMVATAAVIDDRPSCFRFPRGN 626 (654)
Q Consensus 585 ~~r~iPnl~V~~PsD~~E~----~~ll~~al~~~~~P~~ir~~r~~ 626 (654)
+++.+--. .....++.++ ..+++.|+. ..+|+||-+|+..
T Consensus 117 ~~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~-~~GPV~l~iP~Dv 160 (575)
T TIGR02720 117 IYADVAVY-NRTAMTAESLPHVIDEAIRRAYA-HNGVAVVTIPVDF 160 (575)
T ss_pred hhhhcceE-EEEeCCHHHHHHHHHHHHHHHhh-CCCCEEEEECcch
Confidence 77765432 2333344444 456666665 6799999999864
No 250
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=75.54 E-value=27 Score=34.83 Aligned_cols=99 Identities=10% Similarity=0.103 Sum_probs=54.8
Q ss_pred HHHHHHHhc-CCeeEEee--hHHHHHhHHHHHHHhhhcCCCCEEEEE-ecCCccCCCCCCC--------------CC---
Q 006251 521 TFAAGLASE-GVKPFCAI--YSSFLQRGYDQVVHDVDLQKLPVRFAM-DRAGLVGADGPTH--------------CG--- 579 (654)
Q Consensus 521 g~AaGlA~~-G~~Pi~~t--fa~Fl~ra~dQI~~~~a~~~lpV~~v~-~~~G~~g~dG~tH--------------q~--- 579 (654)
+.|.|.++. .-++++.+ -..|++.....+. .+...++||+++. ...++ |.-+.+. +.
T Consensus 58 paAiGa~la~p~r~Vv~i~GDGs~f~m~~~eL~-ta~~~~lpv~iiVlnN~~y-g~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (193)
T cd03375 58 AVATGVKLANPDLTVIVVSGDGDLAAIGGNHFI-HAARRNIDITVIVHNNQIY-GLTKGQASPTTPEGFKTKTTPYGNIE 135 (193)
T ss_pred HHHHHHHHhCCCCeEEEEeccchHhhccHHHHH-HHHHhCCCeEEEEEcCccc-ccCCCccCCCCCCCCcccCCCCCCCC
Confidence 366666664 23455555 5554434344443 3456789988765 34443 1111000 00
Q ss_pred -hhhHH-HHhcCCCCEE---EecCCHHHHHHHHHHHHhCCCCcEEEEec
Q 006251 580 -AFDVT-FMSCLPNMVV---MAPSDEAELMHMVATAAVIDDRPSCFRFP 623 (654)
Q Consensus 580 -~edla-~~r~iPnl~V---~~PsD~~E~~~ll~~al~~~~~P~~ir~~ 623 (654)
..|.. +.+++ |..- +...++.|+...++.+++ .++|++|-..
T Consensus 136 ~~~d~~~iA~a~-G~~~~~~~~v~~~~el~~al~~al~-~~gp~vIev~ 182 (193)
T cd03375 136 EPFNPLALALAA-GATFVARGFSGDIKQLKEIIKKAIQ-HKGFSFVEVL 182 (193)
T ss_pred CCCCHHHHHHHC-CCCEEEEEecCCHHHHHHHHHHHHh-cCCCEEEEEE
Confidence 01222 33333 3332 478999999999999975 6899988654
No 251
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=75.43 E-value=14 Score=43.39 Aligned_cols=111 Identities=14% Similarity=0.146 Sum_probs=65.5
Q ss_pred cccchhHHHHHHHHHHHHhc----C--CeeEEee-hHHHHH-hHHHHHHHhhhcCCCCEEEEEecCCccCCCCCC----C
Q 006251 510 FDVGIAEQHAVTFAAGLASE----G--VKPFCAI-YSSFLQ-RGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPT----H 577 (654)
Q Consensus 510 id~GIaE~~mvg~AaGlA~~----G--~~Pi~~t-fa~Fl~-ra~dQI~~~~a~~~lpV~~v~~~~G~~g~dG~t----H 577 (654)
+.+|+.= +-+++|.|+|+. | .+.+|.+ -..+.. .+++.+ +.++..+.|++++...-+... ++++ +
T Consensus 110 ~~~g~~~-~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~eG~~~EAl-n~A~~~k~~li~Ii~dN~~si-~~~~~~~~~ 186 (581)
T PRK12315 110 FTVGHTS-TSIALATGLAKARDLKGEKGNIIAVIGDGSLSGGLALEGL-NNAAELKSNLIIIVNDNQMSI-AENHGGLYK 186 (581)
T ss_pred cCCCcHH-HHHHHHHHHHHHHHhcCCCCeEEEEECchhhhcchHHHHH-HHHHhhCCCEEEEEECCCCcC-CCCCchhhh
Confidence 4556543 467778888774 3 3344444 566654 667764 778888999999997776531 2222 1
Q ss_pred C-------ChhhH-HHHhcCCCCEEEecCCHH---HHHHHHHHHHhCCCCcEEEEecCC
Q 006251 578 C-------GAFDV-TFMSCLPNMVVMAPSDEA---ELMHMVATAAVIDDRPSCFRFPRG 625 (654)
Q Consensus 578 q-------~~edl-a~~r~iPnl~V~~PsD~~---E~~~ll~~al~~~~~P~~ir~~r~ 625 (654)
. ...++ ..+.++ |+..+.|.|.+ ++..+++.+ ...++|++|.....
T Consensus 187 ~l~~~~~~~~~~~~~~~~a~-G~~~~~v~DG~D~~~l~~a~~~a-~~~~gP~~i~~~T~ 243 (581)
T PRK12315 187 NLKELRDTNGQSENNLFKAM-GLDYRYVEDGNDIESLIEAFKEV-KDIDHPIVLHIHTL 243 (581)
T ss_pred hhhhhhhcccccHHHHHHhc-CCeEEEeeCCCCHHHHHHHHHHH-HhCCCCEEEEEEee
Confidence 1 01111 245655 77776665555 555555555 34578999865443
No 252
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=74.72 E-value=30 Score=33.48 Aligned_cols=114 Identities=13% Similarity=0.049 Sum_probs=64.7
Q ss_pred CCccccchhHHHHHHHHHHHHhcCCeeEEe-e-hHHHHHhHHHHHHHhhhcCCCCEEEEEecCCc--cCCCCCCC-----
Q 006251 507 DRCFDVGIAEQHAVTFAAGLASEGVKPFCA-I-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTH----- 577 (654)
Q Consensus 507 ~R~id~GIaE~~mvg~AaGlA~~G~~Pi~~-t-fa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~--~g~dG~tH----- 577 (654)
=|++.+ -.|++.+.+|.|++..- +|-+. + -.+=+..+..-| .++...+.||+++...... .+.....|
T Consensus 36 i~~i~~-rhE~~A~~mA~gyar~t-~~gv~~~t~GpG~~n~~~gl-~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~ 112 (162)
T cd07038 36 LRWVGN-CNELNAGYAADGYARVK-GLGALVTTYGVGELSALNGI-AGAYAEHVPVVHIVGAPSTKAQASGLLLHHTLGD 112 (162)
T ss_pred ceEEee-CCHHHHHHHHHHHHHhh-CCEEEEEcCCccHHHHHHHH-HHHHHcCCCEEEEecCCCccccccccceeecccc
Confidence 355554 89999999999999985 34333 2 333334444444 3345678999998633221 12222223
Q ss_pred CChh-hHHHHhcCCCCEEEecCCHHHHHHHHHHHHh---CCCCcEEEEecC
Q 006251 578 CGAF-DVTFMSCLPNMVVMAPSDEAELMHMVATAAV---IDDRPSCFRFPR 624 (654)
Q Consensus 578 q~~e-dla~~r~iPnl~V~~PsD~~E~~~ll~~al~---~~~~P~~ir~~r 624 (654)
+..+ ...+++.+=... +...++.++..+++.|+. ...+|++|-+||
T Consensus 113 ~~~~d~~~~~~~~tk~~-~~v~~~~~i~~~v~~A~~~a~s~~gPV~l~iP~ 162 (162)
T cd07038 113 GDFDVFLKMFEEITCAA-ARLTDPENAAEEIDRVLRTALRESRPVYIEIPR 162 (162)
T ss_pred cchHHHHHHHHhheeEE-EEeCCHHHHHHHHHHHHHHHHHCCCCEEEEccC
Confidence 2223 356666654433 333455555555554433 235899998876
No 253
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=74.71 E-value=36 Score=38.13 Aligned_cols=115 Identities=17% Similarity=0.133 Sum_probs=72.0
Q ss_pred CccccchhHHHHHHHHHHHHhc-CCeeEEee-hHHHHHhHHHHHHHhhhcCCCCEEEEEecCCc--cCCCCCCCCChhhH
Q 006251 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFDV 583 (654)
Q Consensus 508 R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~t-fa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~--~g~dG~tHq~~edl 583 (654)
+++.+ ..|+++.-+|-|+|.. |...+|.+ +.+=...++.-| ..+...+.||+++...... .+. | .+|.+...
T Consensus 40 ~~v~~-~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~gl-~~A~~~~~Pvl~i~g~~~~~~~~~-~-~~q~~d~~ 115 (432)
T TIGR00173 40 RVHVH-IDERSAGFFALGLAKASGRPVAVVCTSGTAVANLLPAV-IEASYSGVPLIVLTADRPPELRGC-G-ANQTIDQP 115 (432)
T ss_pred EEEEe-cCCccHHHHHHHHHhccCCCEEEEECCcchHhhhhHHH-HHhcccCCcEEEEeCCCCHHHhCC-C-CCcccchh
Confidence 66665 8999999999999997 64444443 544333343333 3455678999988632221 122 2 35666666
Q ss_pred HHHhcCCCCE--EEecCC-------HHHHHHHHHHHHhCCCCcEEEEecCCC
Q 006251 584 TFMSCLPNMV--VMAPSD-------EAELMHMVATAAVIDDRPSCFRFPRGN 626 (654)
Q Consensus 584 a~~r~iPnl~--V~~PsD-------~~E~~~ll~~al~~~~~P~~ir~~r~~ 626 (654)
.+++.+--.. |-.|.+ +..+..+++.|.....+|++|-+|...
T Consensus 116 ~~~~~~tk~~~~v~~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv 167 (432)
T TIGR00173 116 GLFGSYVRWSLDLPLPEADEPLAYLRSTVDRAVAQAQGPPPGPVHINVPFRE 167 (432)
T ss_pred hHHhhccceeeeCCCCCccccHHHHHHHHHHHHHHhhCCCCCCEEEeCCCCC
Confidence 7777665433 334554 345666777775445689999999753
No 254
>PRK12474 hypothetical protein; Provisional
Probab=74.03 E-value=33 Score=39.42 Aligned_cols=116 Identities=13% Similarity=0.046 Sum_probs=72.2
Q ss_pred CccccchhHHHHHHHHHHHHhc-CCeeEEee-hHHHHHhHHHHHHHhhhcCCCCEEEEEecCCccCCCCCCCCChhhHHH
Q 006251 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTF 585 (654)
Q Consensus 508 R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~t-fa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~~g~dG~tHq~~edla~ 585 (654)
|++.+ --|++.+.+|-|+|.. |...+|.+ +.+=+..++--| .++-.-+.||+++.............||.....++
T Consensus 45 ~~i~~-rhE~~A~~mAdgYaR~tg~~gv~~~t~GpG~~N~~~gl-~~A~~d~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~ 122 (518)
T PRK12474 45 RPVLC-LFEGVVTGAADGYGRIAGKPAVTLLHLGPGLANGLANL-HNARRAASPIVNIVGDHAVEHLQYDAPLTSDIDGF 122 (518)
T ss_pred eEEEe-cchHHHHHHHHHHHHHhCCCEEEEEccchhHhHhHHHH-HHHhhcCCCEEEEeccCchhhcCCCCccccCHHHh
Confidence 77776 8999999999999986 65555443 544333343332 23445689999886322211111123555555566
Q ss_pred HhcCCCCEEEecCCHHHHHHHHHHHHh----CCCCcEEEEecCCC
Q 006251 586 MSCLPNMVVMAPSDEAELMHMVATAAV----IDDRPSCFRFPRGN 626 (654)
Q Consensus 586 ~r~iPnl~V~~PsD~~E~~~ll~~al~----~~~~P~~ir~~r~~ 626 (654)
++.+-- ..+...++.++..+++.|+. ...+|++|-+|+--
T Consensus 123 ~~~vtk-~~~~v~~~~~~~~~i~rA~~~A~~~~~GPV~l~iP~Dv 166 (518)
T PRK12474 123 ARPVSR-WVHRSASAGAVDSDVARAVQAAQSAPGGIATLIMPADV 166 (518)
T ss_pred hhcccc-eeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEechhh
Confidence 775542 24456778887777776653 34589999999864
No 255
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=74.01 E-value=53 Score=38.08 Aligned_cols=115 Identities=16% Similarity=0.101 Sum_probs=69.3
Q ss_pred CCccccchhHHHHHHHHHHHHhc-CCeeEEee-hHHHHHhHHHHHHHhhhcCCCCEEEEEecCCc--cCCCCCCCCChhh
Q 006251 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFD 582 (654)
Q Consensus 507 ~R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~t-fa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~--~g~dG~tHq~~ed 582 (654)
=+++.+ ..|++.+.+|.|+|.. |...+|.+ +.+=+..++.-| ..+-..+.||+++...... .+. + .+|....
T Consensus 46 i~~v~~-~hE~~A~~~Adgyar~tg~~~v~~~t~GpG~~n~~~gl-~~A~~~~~Pvl~i~G~~~~~~~~~-~-~~q~~d~ 121 (561)
T PRK06048 46 LRHILV-RHEQAAAHAADGYARATGKVGVCVATSGPGATNLVTGI-ATAYMDSVPIVALTGQVPRSMIGN-D-AFQEADI 121 (561)
T ss_pred CeEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCCcHHHHHHHH-HHHhhcCCCEEEEeccCCccccCC-C-Cccccch
Confidence 467776 8999999999999986 65444443 444333444433 3445678999988633222 122 2 2443444
Q ss_pred HHHHhcCCCCEEEecCCHHHHHHHHHHHHh----CCCCcEEEEecCCC
Q 006251 583 VTFMSCLPNMVVMAPSDEAELMHMVATAAV----IDDRPSCFRFPRGN 626 (654)
Q Consensus 583 la~~r~iPnl~V~~PsD~~E~~~ll~~al~----~~~~P~~ir~~r~~ 626 (654)
.++++.+-.. .+.-.++.++..+++.|+. ...+|+||-+|+..
T Consensus 122 ~~~~~~itk~-s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~dv 168 (561)
T PRK06048 122 TGITMPITKH-NYLVQDAKDLPRIIKEAFHIASTGRPGPVLIDLPKDV 168 (561)
T ss_pred hhhccCcceE-EEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEecChhh
Confidence 4455544322 2334566776666666553 24689999999753
No 256
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=73.95 E-value=32 Score=33.91 Aligned_cols=117 Identities=14% Similarity=0.053 Sum_probs=63.3
Q ss_pred CCCCccccch-h-HHHHHHHHHHHHhc--CCeeEEee-hHHHHHhHHHHHHHhhhcCCCCEEEEE-ecCCcc---C-C-C
Q 006251 505 FPDRCFDVGI-A-EQHAVTFAAGLASE--GVKPFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAM-DRAGLV---G-A-D 573 (654)
Q Consensus 505 fp~R~id~GI-a-E~~mvg~AaGlA~~--G~~Pi~~t-fa~Fl~ra~dQI~~~~a~~~lpV~~v~-~~~G~~---g-~-d 573 (654)
.|.+++..+- . =-..++.|.|.++. +.+.++-+ -..|+.-. ..+.+ ++..++|++++. ...|+. . . .
T Consensus 39 ~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG~f~~~~-~el~t-a~~~~~p~~ivV~nN~~~~~~~~~~~~ 116 (183)
T cd02005 39 KGTRFISQPLWGSIGYSVPAALGAALAAPDRRVILLVGDGSFQMTV-QELST-MIRYGLNPIIFLINNDGYTIERAIHGP 116 (183)
T ss_pred CCCEEEeccchhhHhhhHHHHHHHHHhCCCCeEEEEECCchhhccH-HHHHH-HHHhCCCCEEEEEECCCcEEEEEeccC
Confidence 3567776421 1 11133556665554 34444444 67786433 33433 445577877665 344431 0 1 1
Q ss_pred CCCCCC--hhhHHH-HhcC---CCCEEEecCCHHHHHHHHHHHHhCCCCcEEEEec
Q 006251 574 GPTHCG--AFDVTF-MSCL---PNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFP 623 (654)
Q Consensus 574 G~tHq~--~edla~-~r~i---Pnl~V~~PsD~~E~~~ll~~al~~~~~P~~ir~~ 623 (654)
+..+.. ..|..- ..++ |+...+...++.|+..+++.+++..++|++|-..
T Consensus 117 ~~~~~~~~~~d~~~ia~a~G~~~~~~~~~v~~~~el~~al~~a~~~~~~p~liev~ 172 (183)
T cd02005 117 EASYNDIANWNYTKLPEVFGGGGGGLSFRVKTEGELDEALKDALFNRDKLSLIEVI 172 (183)
T ss_pred CcCcccCCCCCHHHHHHHhCCCccccEEEecCHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 111221 123332 3333 2377788899999999999997535789888553
No 257
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=73.71 E-value=4.7 Score=38.57 Aligned_cols=106 Identities=15% Similarity=0.153 Sum_probs=66.4
Q ss_pred hhHHHHHHHHHHHHhcCCeeEEeehHHHHHhHHHHHHHhhhcCCCCEEEEEecCCccCCCCCCCCC----hhhHHHHhcC
Q 006251 514 IAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCG----AFDVTFMSCL 589 (654)
Q Consensus 514 IaE~~mvg~AaGlA~~G~~Pi~~tfa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~~g~dG~tHq~----~edla~~r~i 589 (654)
-+|..-+|+++|..+.|.+|-.-+-.+=+-.....+...--..++|..++.+|-|..+++=+.+-+ ..+ +++ .
T Consensus 49 tREEeg~GIcAGa~lAGkk~ailmQnsGlGNsiNal~SL~~ty~iPl~ml~ShRG~~~E~i~AQVpmGr~~~k--iLe-~ 125 (172)
T COG4032 49 TREEEGVGICAGAYLAGKKPAILMQNSGLGNSINALASLYVTYKIPLLMLASHRGVLKEGIEAQVPMGRALPK--ILE-G 125 (172)
T ss_pred cchhcceeeehhhhhcCCCcEEEEeccCcchHHHHHHHHHHHhccchhhhhhccchhhcCCccccccchhhHH--HHh-h
Confidence 478888999999999999998776333232222222111223588999999998876554333222 222 222 2
Q ss_pred CCCEEEecCCHHHHHHHHH----HHHhCCCCcEEEEec
Q 006251 590 PNMVVMAPSDEAELMHMVA----TAAVIDDRPSCFRFP 623 (654)
Q Consensus 590 Pnl~V~~PsD~~E~~~ll~----~al~~~~~P~~ir~~ 623 (654)
-++.-+.|-.|+|+..++. .++ +...|+.+.++
T Consensus 126 ~~lpt~t~~~p~Ea~~li~~~~~~a~-~~s~pv~vlls 162 (172)
T COG4032 126 LELPTYTIIGPEEALPLIENAILDAF-ENSRPVAVLLS 162 (172)
T ss_pred cCCcccccCCHHHHHHHHHHHHHHHH-HcCCceEEEec
Confidence 2556788888888666554 444 46678888775
No 258
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=73.06 E-value=63 Score=37.60 Aligned_cols=117 Identities=12% Similarity=-0.006 Sum_probs=73.2
Q ss_pred CCccccchhHHHHHHHHHHHHhc-CCeeEEee-hHHHHHhHHHHHHHhhhcCCCCEEEEEecCCcc--CCCCCCCCChhh
Q 006251 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLV--GADGPTHCGAFD 582 (654)
Q Consensus 507 ~R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~t-fa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~~--g~dG~tHq~~ed 582 (654)
=|++.+ -.|+++..+|.|++.. |...+|.+ ..+=+..++.-| ..+...+.||+++....... +..-.++|.+..
T Consensus 48 i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~l~gl-~~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~ 125 (569)
T PRK09259 48 IRYIGF-RHEQSAGNAAAAAGFLTQKPGVCLTVSAPGFLNGLTAL-ANATTNCFPMIMISGSSEREIVDLQQGDYEELDQ 125 (569)
T ss_pred CCEEee-CCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHH-HHHHhcCCCEEEEEccCCcccccccCCCccccch
Confidence 467766 8999999999999997 65555544 555444444443 44556789999886322111 111123666666
Q ss_pred HHHHhcCCCCEEEecCCHHHHHHHHH----HHHhCCCCcEEEEecCCC
Q 006251 583 VTFMSCLPNMVVMAPSDEAELMHMVA----TAAVIDDRPSCFRFPRGN 626 (654)
Q Consensus 583 la~~r~iPnl~V~~PsD~~E~~~ll~----~al~~~~~P~~ir~~r~~ 626 (654)
..+++.+-.. .+...++.++...++ .|+....||+||-+|+..
T Consensus 126 ~~~~~~~tk~-s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv 172 (569)
T PRK09259 126 LNAAKPFCKA-AFRVNRAEDIGIGVARAIRTAVSGRPGGVYLDLPAKV 172 (569)
T ss_pred hhhhhhheee-eEEcCCHHHHHHHHHHHHHHhhhCCCCcEEEEeCHHH
Confidence 6677766542 344456666666554 444335689999999763
No 259
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=73.02 E-value=39 Score=39.55 Aligned_cols=148 Identities=14% Similarity=0.113 Sum_probs=82.1
Q ss_pred HHHHHHHHhhC--CcEEEEecCccCCCC-hhhHHHhCC-CCccccchhHHHHHHHHHHHHhc-CCeeEEee-hHHHHHhH
Q 006251 472 AESLIKEAETD--DKIVAIHAAMGGGTG-LNYFQKRFP-DRCFDVGIAEQHAVTFAAGLASE-GVKPFCAI-YSSFLQRG 545 (654)
Q Consensus 472 ~~aL~~~~~~d--~~vvvl~aDlg~s~~-l~~f~~~fp-~R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~t-fa~Fl~ra 545 (654)
+++|.+.+++. ..|+.+..+- ... ++.+.+..+ =|++.+ -.|++++.+|-|+|.. |...+|.. +.+=+..+
T Consensus 6 a~~l~~~L~~~GV~~vFGvpG~~--~~~l~dal~~~~~~i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~ 82 (597)
T PRK08273 6 ADFILERLREWGVRRVFGYPGDG--INGLLGALGRADDKPEFVQA-RHEEMAAFMAVAHAKFTGEVGVCLATSGPGAIHL 82 (597)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCc--hHHHHHHHHhccCCCeEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHH
Confidence 45566666554 3445443321 111 244433222 467766 8999999999999986 65555543 54433344
Q ss_pred HHHHHHhhhcCCCCEEEEEecCCc--cCCCCCCCCChhhHHHHhcCCCCEEEecCCHHHHHH----HHHHHHhCCCCcEE
Q 006251 546 YDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMH----MVATAAVIDDRPSC 619 (654)
Q Consensus 546 ~dQI~~~~a~~~lpV~~v~~~~G~--~g~dG~tHq~~edla~~r~iPnl~V~~PsD~~E~~~----ll~~al~~~~~P~~ 619 (654)
+.-| .++-..+.||+++...... .+.+ .+|......+++.+---......++.++.. +++.|.. ..+|++
T Consensus 83 ~~gi-~~A~~d~vPvl~I~G~~~~~~~~~~--~~q~~d~~~l~~~vt~k~~~~v~~~~~~~~~l~~A~~~A~~-~~gPV~ 158 (597)
T PRK08273 83 LNGL-YDAKLDHVPVVAIVGQQARAALGGH--YQQEVDLQSLFKDVAGAFVQMVTVPEQLRHLVDRAVRTALA-ERTVTA 158 (597)
T ss_pred HHHH-HHHHhcCCCEEEEecCCchhhcCCC--CCCccCHHHHHHHHHHHHeeEeCCHHHHHHHHHHHHHHHhh-CCCCEE
Confidence 3333 3444578999988633222 1322 355555556666653112334444444444 5555544 458999
Q ss_pred EEecCCC
Q 006251 620 FRFPRGN 626 (654)
Q Consensus 620 ir~~r~~ 626 (654)
|-+|+-.
T Consensus 159 i~iP~Dv 165 (597)
T PRK08273 159 VILPNDV 165 (597)
T ss_pred EEeCcch
Confidence 9999764
No 260
>PLN02573 pyruvate decarboxylase
Probab=72.17 E-value=42 Score=39.20 Aligned_cols=114 Identities=13% Similarity=0.138 Sum_probs=66.9
Q ss_pred CccccchhHHHHHHHHHHHHhc-CCeeEEee-hHHHHHhHHHHHHHhhhcCCCCEEEEEecCCc--cCCCCCCCCCh---
Q 006251 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGA--- 580 (654)
Q Consensus 508 R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~t-fa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~--~g~dG~tHq~~--- 580 (654)
|++.+ --|++...+|-|+|.. | .++|.+ +.+=...+..-| ..+-..+.||+++...... .+.++..||..
T Consensus 56 ~~i~~-rhE~~A~~mAdgyaR~tg-~gv~~~t~GpG~~n~~~gl-a~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~ 132 (578)
T PLN02573 56 NLIGC-CNELNAGYAADGYARARG-VGACVVTFTVGGLSVLNAI-AGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLP 132 (578)
T ss_pred eEEEe-CCHHHHHHHHHHHHHHhC-CCeEEEecCccHHHHHHHH-HHHHHhCCCEEEEECCCChhhhhcCceeeeecCCC
Confidence 55555 7899999999999986 8 666654 443333333333 2333468999998633222 24445556532
Q ss_pred ---hhHHHHhcCCCCEEEecCCHHH----HHHHHHHHHhCCCCcEEEEecCCC
Q 006251 581 ---FDVTFMSCLPNMVVMAPSDEAE----LMHMVATAAVIDDRPSCFRFPRGN 626 (654)
Q Consensus 581 ---edla~~r~iPnl~V~~PsD~~E----~~~ll~~al~~~~~P~~ir~~r~~ 626 (654)
.++.+++.+--. .....++.+ +..+++.|+. ..+|+||-+|+..
T Consensus 133 ~~~~~~~~~~~itk~-s~~v~~~~~~~~~l~~A~~~A~~-~~gPV~l~iP~Dv 183 (578)
T PLN02573 133 DFSQELRCFQTVTCY-QAVINNLEDAHELIDTAISTALK-ESKPVYISVSCNL 183 (578)
T ss_pred ChHHHHHHhhceEEE-EEEeCCHHHHHHHHHHHHHHHHh-cCCCEEEEeehhh
Confidence 223444443321 223334444 4456666654 4689999999874
No 261
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=72.14 E-value=58 Score=37.86 Aligned_cols=115 Identities=12% Similarity=0.025 Sum_probs=67.7
Q ss_pred CccccchhHHHHHHHHHHHHhc-CCeeEEee-hHHHHHhHHHHHHHhhhcCCCCEEEEEecCCccCCCCCCCCChhhHHH
Q 006251 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTF 585 (654)
Q Consensus 508 R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~t-fa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~~g~dG~tHq~~edla~ 585 (654)
|++.+ -.|+++..+|.|+|.. |...+|.+ ..+=...+..-| ..+...+.||+++....-.....-..||...+..+
T Consensus 43 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~gi-~~A~~~~~Pvl~i~G~~~~~~~~~~~~Q~~d~~~l 120 (574)
T PRK09124 43 EWMHT-RHEEVAAFAAGAEAQLTGELAVCAGSCGPGNLHLINGL-FDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQEL 120 (574)
T ss_pred cEEEe-CcHHHHHHHHHHHHHhhCCcEEEEECCCCCHHHHHHHH-HHHhhcCCCEEEEecCCccccCCCCCccccChhhh
Confidence 56554 6899999999999997 54444433 333122333333 34455789999886322211111224776667677
Q ss_pred HhcCCCCEEEecCCHHH----HHHHHHHHHhCCCCcEEEEecCCC
Q 006251 586 MSCLPNMVVMAPSDEAE----LMHMVATAAVIDDRPSCFRFPRGN 626 (654)
Q Consensus 586 ~r~iPnl~V~~PsD~~E----~~~ll~~al~~~~~P~~ir~~r~~ 626 (654)
++.+--.. +...++.+ +..+++.|.. ..+|++|-+|+.-
T Consensus 121 ~~~itk~~-~~v~~~~~~~~~i~~A~~~A~~-~~gPV~l~iP~Dv 163 (574)
T PRK09124 121 FRECSHYC-ELVSNPEQLPRVLAIAMRKAIL-NRGVAVVVLPGDV 163 (574)
T ss_pred cccceeee-EEeCCHHHHHHHHHHHHHHHhc-CCCCEEEEeChhh
Confidence 77554322 23445555 4456666654 5699999998753
No 262
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=72.06 E-value=36 Score=33.28 Aligned_cols=34 Identities=21% Similarity=0.381 Sum_probs=24.5
Q ss_pred hhhc-CCeEEeecCCCCHHHHHHHHHHhHhCCCCCCEEEE
Q 006251 387 FEEL-GLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIH 425 (654)
Q Consensus 387 fea~-G~~~ig~vDGhDi~~L~~al~~ak~~~~~gP~lI~ 425 (654)
++.+ |+.++.| .|.++....++.+.+. ++|++|.
T Consensus 130 lr~iPg~~V~~P---sd~~e~~~~l~~~~~~--~~P~~~~ 164 (167)
T cd07036 130 FAHIPGLKVVAP---STPYDAKGLLKAAIRD--DDPVIFL 164 (167)
T ss_pred HhcCCCCEEEee---CCHHHHHHHHHHHHhC--CCcEEEE
Confidence 4444 7887766 5677788888877764 6899874
No 263
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=71.58 E-value=52 Score=38.08 Aligned_cols=117 Identities=10% Similarity=-0.018 Sum_probs=71.5
Q ss_pred CCccccchhHHHHHHHHHHHHhc-CCeeEEee-hHHHHHhHHHHHHHhhhcCCCCEEEEEecCCcc--CCCCCCCCChhh
Q 006251 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLV--GADGPTHCGAFD 582 (654)
Q Consensus 507 ~R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~t-fa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~~--g~dG~tHq~~ed 582 (654)
=|++.+ --|++++.+|-|+|.. |...+|.+ ..+=+..+..-| ..+...+.||+++....... +..-..||....
T Consensus 41 i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~~gi-a~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~ 118 (554)
T TIGR03254 41 MRYIGF-RHEQSAGYAAAAAGFLTQKPGVCLTVSAPGFLNGLTAL-ANATTNCFPMIMISGSSERHIVDLQQGDYEEMDQ 118 (554)
T ss_pred CcEEEe-CCHHHHHHHHHHHHHHhCCCEEEEEccCccHHhHHHHH-HHHHhcCCCEEEEEccCCccccccCCCCcchhhH
Confidence 367776 8999999999999986 65455544 443333333332 34445789999886322211 111223666666
Q ss_pred HHHHhcCCCCEEEecCCHHHHHHHH----HHHHhCCCCcEEEEecCCC
Q 006251 583 VTFMSCLPNMVVMAPSDEAELMHMV----ATAAVIDDRPSCFRFPRGN 626 (654)
Q Consensus 583 la~~r~iPnl~V~~PsD~~E~~~ll----~~al~~~~~P~~ir~~r~~ 626 (654)
..+++.+-.. .+...++.++..++ +.|....++|+||-+|+-.
T Consensus 119 ~~~~~~vtk~-~~~v~~~~~~~~~i~rA~~~A~~~~pGPV~l~iP~Dv 165 (554)
T TIGR03254 119 LAAAKPFAKA-AYRVLRAEDIGIGIARAIRTAVSGRPGGVYLDLPAAV 165 (554)
T ss_pred HHHhhhhhee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHHH
Confidence 6777766442 44555666665544 4444335688999999753
No 264
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=71.32 E-value=35 Score=32.24 Aligned_cols=114 Identities=18% Similarity=0.122 Sum_probs=64.9
Q ss_pred CCCCcccc--chhHHHHHHHHHHHHhc--CCeeEEee-hHHHHHhHHHHHHHhhhcCCCCEEEEE-ecCCc--cC----C
Q 006251 505 FPDRCFDV--GIAEQHAVTFAAGLASE--GVKPFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAM-DRAGL--VG----A 572 (654)
Q Consensus 505 fp~R~id~--GIaE~~mvg~AaGlA~~--G~~Pi~~t-fa~Fl~ra~dQI~~~~a~~~lpV~~v~-~~~G~--~g----~ 572 (654)
.|.|++.. .-+=-..++.|.|.++. +.+.++-+ -.+|+.-. ..+ ..+...++|++++. ...++ .+ .
T Consensus 17 ~p~~~~~~~~~g~mG~~~~~aiGa~~a~p~~~vv~i~GDG~f~~~~-~el-~ta~~~~~~v~~vv~nN~~~~~~~~~~~~ 94 (153)
T PF02775_consen 17 RPRRFLTSGGFGSMGYALPAAIGAALARPDRPVVAITGDGSFLMSL-QEL-ATAVRYGLPVVIVVLNNGGYGMTGGQQTP 94 (153)
T ss_dssp STTEEEESTTTT-TTTHHHHHHHHHHHSTTSEEEEEEEHHHHHHHG-GGH-HHHHHTTSSEEEEEEESSBSHHHHHHHHH
T ss_pred CCCeEEcCCCccccCCHHHhhhHHHhhcCcceeEEecCCcceeecc-chh-HHHhhccceEEEEEEeCCcceEecccccc
Confidence 36677662 22333456667777775 45555555 78887542 333 33456688988776 34443 10 0
Q ss_pred CCC-C----C---CChhhHHHHhcCCCCEEEecC--CHHHHHHHHHHHHhCCCCcEEEE
Q 006251 573 DGP-T----H---CGAFDVTFMSCLPNMVVMAPS--DEAELMHMVATAAVIDDRPSCFR 621 (654)
Q Consensus 573 dG~-t----H---q~~edla~~r~iPnl~V~~Ps--D~~E~~~ll~~al~~~~~P~~ir 621 (654)
.+. + . ....|+.-+..--|+..+.-. |+.|+...++.++ ..++|++|-
T Consensus 95 ~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~~el~~al~~a~-~~~gp~vIe 152 (153)
T PF02775_consen 95 FGGGRFSGVDGKTFPNPDFAALAEAFGIKGARVTTPDPEELEEALREAL-ESGGPAVIE 152 (153)
T ss_dssp TTSTCHHSTBTTTSTTCGHHHHHHHTTSEEEEESCHSHHHHHHHHHHHH-HSSSEEEEE
T ss_pred CcCcccccccccccccCCHHHHHHHcCCcEEEEccCCHHHHHHHHHHHH-hCCCcEEEE
Confidence 111 0 0 222233333433477776644 4599999999998 578999873
No 265
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=69.58 E-value=37 Score=31.97 Aligned_cols=51 Identities=24% Similarity=0.277 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHHHHHcCCCCeEEEEE-cCCCcccchHHHHHHHHhhcCCCEEEEEECCC
Q 006251 257 TSISAGLGMAVARDILGKNNNVISVI-GDGAMTAGQAYEAMNNAGFLDANLIVVLNDNK 314 (654)
Q Consensus 257 ~~is~AlGmAlA~kl~g~~~~Vvavi-GDGal~eG~~~EAln~A~~~~lnLi~Il~dN~ 314 (654)
.+..+|.|.+.+. .+.-++.+. |=|.++ ..+++..|...+.|+++|.-+..
T Consensus 45 ~A~~~A~g~~~~~----~~~~v~~~~~gpG~~n---~~~~l~~A~~~~~Pll~i~~~~~ 96 (155)
T cd07035 45 GAVGMADGYARAT----GKPGVVLVTSGPGLTN---AVTGLANAYLDSIPLLVITGQRP 96 (155)
T ss_pred HHHHHHHHHHHHH----CCCEEEEEcCCCcHHH---HHHHHHHHHhhCCCEEEEeCCCc
Confidence 3455666666553 223344444 555554 66888888888999999987654
No 266
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=69.10 E-value=20 Score=41.82 Aligned_cols=114 Identities=17% Similarity=0.152 Sum_probs=67.9
Q ss_pred CccccchhHHHHHHHHHHHHhc-CCeeEEee-hHHHHHhHHHHHHHhhhcCCCCEEEEEecCCc--cCCCCCCCCChhhH
Q 006251 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFDV 583 (654)
Q Consensus 508 R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~t-fa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~--~g~dG~tHq~~edl 583 (654)
|++.+ ..|++.+.+|.|+|+. |...+|.+ ..+=+..++.-| .++-..+.||+++...... .+.+ .+|.+...
T Consensus 53 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~l~gl-~~A~~~~~Pvl~I~G~~~~~~~~~~--~~q~~d~~ 128 (585)
T CHL00099 53 KHILV-RHEQGAAHAADGYARSTGKVGVCFATSGPGATNLVTGI-ATAQMDSVPLLVITGQVGRAFIGTD--AFQEVDIF 128 (585)
T ss_pred eEEEe-cCHHHHHHHHHHHHHhcCCcEEEEECCCCcHHHHHHHH-HHHhhcCCCEEEEecCCCccccCCC--Cccccchh
Confidence 56765 8999999999999986 65545443 444333333332 3444578999998633322 1222 24444444
Q ss_pred HHHhcCCCCEEEecCCHHHHHHHHHHHHh----CCCCcEEEEecCCC
Q 006251 584 TFMSCLPNMVVMAPSDEAELMHMVATAAV----IDDRPSCFRFPRGN 626 (654)
Q Consensus 584 a~~r~iPnl~V~~PsD~~E~~~ll~~al~----~~~~P~~ir~~r~~ 626 (654)
.+++.+-- ......++.++..+++.|+. ...+|+||-+|+-.
T Consensus 129 ~~~~~~tk-~~~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~Dv 174 (585)
T CHL00099 129 GITLPIVK-HSYVVRDARDISRIVAEAFYIAKHGRPGPVLIDIPKDV 174 (585)
T ss_pred hhhcCcee-EEEEeCCHHHHHHHHHHHHHHHccCCCCeEEEecChhh
Confidence 44444321 23445566777766665543 24589999999753
No 267
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=66.76 E-value=48 Score=43.79 Aligned_cols=148 Identities=15% Similarity=0.125 Sum_probs=88.2
Q ss_pred HHHHHHHHHHhhCC--cEEEEecCccCCCCh-hhHHHhCC-CCccccchhHHHHHHHHHHHHhc-CCeeEEe-ehHHHHH
Q 006251 470 YFAESLIKEAETDD--KIVAIHAAMGGGTGL-NYFQKRFP-DRCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQ 543 (654)
Q Consensus 470 a~~~aL~~~~~~d~--~vvvl~aDlg~s~~l-~~f~~~fp-~R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~-tfa~Fl~ 543 (654)
.+++.|.+.+++.. .++.+..+ ....+ +.+. +.+ =|++.+ ..|+++.-+|.|+|.. |...+|. |..+=+.
T Consensus 302 ~~a~~lv~~L~~~GV~~vFg~PG~--~~~pL~dAl~-~~~~i~~i~~-rhErsAafmAdGyAR~TgkpgV~i~TsGPG~t 377 (1655)
T PLN02980 302 VWASLIIEECTRLGLTYFCVAPGS--RSSPLAIAAS-NHPLTTCIAC-FDERSLAFHALGYARGSLKPAVVITSSGTAVS 377 (1655)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCC--CCHHHHHHHH-hCCCCeEEec-cCcchHHHHHHHHHHHhCCCEEEEEeCcHHHH
Confidence 34555666665543 34433221 11122 3332 223 366655 9999999999999997 5433333 3544444
Q ss_pred hHHHHHHHhhhcCCCCEEEEEecCCc--cCCCCCCCCChhhHHHHhcCCCCEEE--ecCCH-------HHHHHHHHHHHh
Q 006251 544 RGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFDVTFMSCLPNMVVM--APSDE-------AELMHMVATAAV 612 (654)
Q Consensus 544 ra~dQI~~~~a~~~lpV~~v~~~~G~--~g~dG~tHq~~edla~~r~iPnl~V~--~PsD~-------~E~~~ll~~al~ 612 (654)
.++.-| ..+...+.||+++...... .+. | .+|.+.+.++++.+--..+- .|.+. ..+..+++.|..
T Consensus 378 N~l~av-~eA~~d~vPlLvItgd~p~~~~~~-g-a~Q~iDq~~lf~pvtK~s~~v~~p~~~~~~~~l~~~v~~A~~~A~s 454 (1655)
T PLN02980 378 NLLPAV-VEASQDFVPLLLLTADRPPELQDA-G-ANQAINQVNHFGSFVRFFFNLPPPTDLIPARMVLTTLDSAVHWATS 454 (1655)
T ss_pred HHHHHH-HHHhhcCCCEEEEeCCCCHHHhcC-C-CCcccchhhHHHhhhheeecCCCccchhhHHHHHHHHHHHHHHHhC
Confidence 444443 3455678999998633222 232 2 37778888888888765554 45552 456667777754
Q ss_pred CCCCcEEEEecC
Q 006251 613 IDDRPSCFRFPR 624 (654)
Q Consensus 613 ~~~~P~~ir~~r 624 (654)
...|||+|-+|.
T Consensus 455 ~rpGPVhL~iP~ 466 (1655)
T PLN02980 455 SPCGPVHINCPF 466 (1655)
T ss_pred CCCCCEEEECcc
Confidence 456999999995
No 268
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=65.70 E-value=57 Score=38.81 Aligned_cols=49 Identities=16% Similarity=0.333 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHH-HHHhhcCCCEEEEEECCCC
Q 006251 259 ISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAM-NNAGFLDANLIVVLNDNKQ 315 (654)
Q Consensus 259 is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAl-n~A~~~~lnLi~Il~dN~~ 315 (654)
+++|.|||++ | -+.+++.+. .+.. .+++.+ +.++..++|++++++.-+.
T Consensus 374 vg~AaGlA~~----G-~~P~v~~f~--~Fl~-ra~dQI~~~~a~~~lpv~~v~~~~G~ 423 (641)
T PRK12571 374 VTFAAGLAAA----G-LKPFCAVYS--TFLQ-RGYDQLLHDVALQNLPVRFVLDRAGL 423 (641)
T ss_pred HHHHHHHHHC----C-CEEEEEehH--HHHH-HHHHHHHHHHhhcCCCeEEEEECCCc
Confidence 5677777752 2 344555544 4554 788887 5588889999999976664
No 269
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=63.84 E-value=77 Score=30.67 Aligned_cols=51 Identities=14% Similarity=0.167 Sum_probs=33.7
Q ss_pred hhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHh-hcCCCEEEEEECCC
Q 006251 256 STSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAG-FLDANLIVVLNDNK 314 (654)
Q Consensus 256 G~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~-~~~lnLi~Il~dN~ 314 (654)
+.+.++|.|.+++ ....++|+.+=|- |...-+|..|. ....|+++|+-.-+
T Consensus 44 e~aa~~aAg~~~~-----~~~~~v~~~~sG~---gn~~~~l~~a~~~~~~Pvl~i~g~rg 95 (157)
T TIGR03845 44 EEGVGICAGAYLA-----GKKPAILMQSSGL---GNSINALASLNKTYGIPLPILASWRG 95 (157)
T ss_pred HHHHHHHHHHHHh-----cCCcEEEEeCCcH---HHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 4455666666633 3556788888773 34666777777 66799999995443
No 270
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=63.74 E-value=82 Score=36.70 Aligned_cols=115 Identities=17% Similarity=0.087 Sum_probs=70.3
Q ss_pred CccccchhHHHHHHHHHHHHhc-CCeeEEe-ehHHHHHhHHHHHHHhhhcCCCCEEEEEecCCc--cCCCC------CCC
Q 006251 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADG------PTH 577 (654)
Q Consensus 508 R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~-tfa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~--~g~dG------~tH 577 (654)
|++.+ --|++.+.+|-|+|.. |...+|. +..+=+..++.-| ..+...+.||+++...... .+.++ -.+
T Consensus 52 ~~V~~-rhE~~A~~~Adgyar~tgk~gv~~~t~GPG~~N~~~gl-a~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~ 129 (569)
T PRK08327 52 EFVIC-PHEIVAISMAHGYALVTGKPQAVMVHVDVGTANALGGV-HNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHWT 129 (569)
T ss_pred cEEec-CCHHHHHHHHHHHHHhhCCCeEEEEecCHHHHHHHHHH-HHHhhcCCCEEEEeccCCccccccccccccCcccc
Confidence 77776 7899999999999997 5444444 3555444444443 3445678999988633221 11110 123
Q ss_pred CC-hhhHHHHhcCCCCEEEecCCHHHHHHHHHHHHh----CCCCcEEEEecCC
Q 006251 578 CG-AFDVTFMSCLPNMVVMAPSDEAELMHMVATAAV----IDDRPSCFRFPRG 625 (654)
Q Consensus 578 q~-~edla~~r~iPnl~V~~PsD~~E~~~ll~~al~----~~~~P~~ir~~r~ 625 (654)
|. +....+++.+-. ..+...++.++..+++.|+. ..++|++|-+|+-
T Consensus 130 qe~~d~~~~~~~vtk-~~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~i~iP~D 181 (569)
T PRK08327 130 QEMRDQGGLVREYVK-WDYEIRRGDQIGEVVARAIQIAMSEPKGPVYLTLPRE 181 (569)
T ss_pred hhhhhHHHHHhhhhh-hhcccCCHHHHHHHHHHHHHHHhcCCCCCEEEECcHH
Confidence 44 455566665543 33455666776666655543 3468999999964
No 271
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=62.65 E-value=32 Score=36.56 Aligned_cols=90 Identities=17% Similarity=0.239 Sum_probs=48.4
Q ss_pred CeeEEee-hHHHHHhHHHHHHHhhhcCCCCEEEEEecCCccCCCCCCCC--ChhhHHHHh---cCCCCEEEecCCHHHHH
Q 006251 531 VKPFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHC--GAFDVTFMS---CLPNMVVMAPSDEAELM 604 (654)
Q Consensus 531 ~~Pi~~t-fa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~~g~dG~tHq--~~edla~~r---~iPnl~V~~PsD~~E~~ 604 (654)
.++++.+ -..|.+-.+-+-++.++..++||+++..+.++ +-..++.. ...|++-+. .+|+..| .=.|..++.
T Consensus 127 ~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~vv~NN~~-~i~~~~~~~~~~~~~~~~a~a~G~~~~~V-dg~d~~~v~ 204 (293)
T cd02000 127 RVAVCFFGDGATNEGDFHEALNFAALWKLPVIFVCENNGY-AISTPTSRQTAGTSIADRAAAYGIPGIRV-DGNDVLAVY 204 (293)
T ss_pred CEEEEEeCCCccccchHHHHHHHHHhhCCCEEEEEeeCCe-eccCCHHHHhCCccHHHHHHhCCCCEEEE-CCCCHHHHH
Confidence 3444444 55565433333357788899999999876663 22122211 123333333 3444333 223566766
Q ss_pred HHHHHHHh---CCCCcEEEEe
Q 006251 605 HMVATAAV---IDDRPSCFRF 622 (654)
Q Consensus 605 ~ll~~al~---~~~~P~~ir~ 622 (654)
..++.+++ ..++|++|-.
T Consensus 205 ~a~~~A~~~ar~~~~P~lIev 225 (293)
T cd02000 205 EAAKEAVERARAGGGPTLIEA 225 (293)
T ss_pred HHHHHHHHHHHccCCCEEEEE
Confidence 66666543 3578999865
No 272
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=62.35 E-value=64 Score=38.19 Aligned_cols=50 Identities=12% Similarity=0.274 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHH-HHHhhcCCCEEEEEECCCC
Q 006251 258 SISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAM-NNAGFLDANLIVVLNDNKQ 315 (654)
Q Consensus 258 ~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAl-n~A~~~~lnLi~Il~dN~~ 315 (654)
.++.|.|||++ ..+.|+.+ -+.+-. -++|-+ +.++..++|++++....+.
T Consensus 364 ~vg~AaGlA~~------G~~Pvv~~-~a~Fl~-ra~dQi~~~~a~~~lpV~i~~~~~G~ 414 (617)
T TIGR00204 364 AVTFAAGMAIE------GYKPFVAI-YSTFLQ-RAYDQVVHDVCIQKLPVLFAIDRAGI 414 (617)
T ss_pred HHHHHHHHHHC------CCEEEEEe-cHHHHH-HHHHHHHHHHHhcCCCEEEEEECCCc
Confidence 35677777752 33444444 455654 677776 5578889999999987774
No 273
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=62.01 E-value=1.1e+02 Score=29.85 Aligned_cols=37 Identities=16% Similarity=0.366 Sum_probs=25.6
Q ss_pred hhhc-CCeEEeecCCCCHHHHHHHHHHhHhCCCCCCEEEEE
Q 006251 387 FEEL-GLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHV 426 (654)
Q Consensus 387 fea~-G~~~ig~vDGhDi~~L~~al~~ak~~~~~gP~lI~v 426 (654)
+..+ |+.++.| .|.+++...++.+.+...++|++|..
T Consensus 133 ~~~iPg~~v~~P---sd~~e~~~~l~~a~~~~~~~P~~ir~ 170 (178)
T PF02779_consen 133 LRSIPGMKVVVP---SDPAEAKGLLRAAIRRESDGPVYIRE 170 (178)
T ss_dssp HHTSTTEEEEE----SSHHHHHHHHHHHHHSSSSSEEEEEE
T ss_pred cccccccccccC---CCHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 4555 7888777 46778888888777632378998865
No 274
>PLN02790 transketolase
Probab=60.97 E-value=63 Score=38.55 Aligned_cols=90 Identities=16% Similarity=0.209 Sum_probs=57.3
Q ss_pred eEEee-hHHHH-HhHHHHHHHhhhcCCCC-EEEEEecCCccCCCCCCCCC-hhhHH-HHhcCCCCEEEec----CCHHHH
Q 006251 533 PFCAI-YSSFL-QRGYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHCG-AFDVT-FMSCLPNMVVMAP----SDEAEL 603 (654)
Q Consensus 533 Pi~~t-fa~Fl-~ra~dQI~~~~a~~~lp-V~~v~~~~G~~g~dG~tHq~-~edla-~~r~iPnl~V~~P----sD~~E~ 603 (654)
.+|.+ -..+. -.+++. ++.++..++| ++++.+.-++ .-+|++... .+++. .++++ |+.++.+ -|..++
T Consensus 140 v~~~~GDG~l~eG~~~EA-l~~A~~~~L~nli~i~d~N~~-~i~~~~~~~~~~~~~~~f~a~-G~~~~~vdgg~hd~~~l 216 (654)
T PLN02790 140 TYCILGDGCQMEGISNEA-ASLAGHWGLGKLIVLYDDNHI-SIDGDTEIAFTEDVDKRYEAL-GWHTIWVKNGNTDYDEI 216 (654)
T ss_pred EEEEECcCcccchHHHHH-HHHHHHhCCCCEEEEEecCCc-cccCCcccccchhHHHHHHHc-CCeEEEECCCCCCHHHH
Confidence 44444 34443 255666 4778888987 7778777664 234554332 34433 46666 9999998 456677
Q ss_pred HHHHHHHHhCCCCcEEEEecCC
Q 006251 604 MHMVATAAVIDDRPSCFRFPRG 625 (654)
Q Consensus 604 ~~ll~~al~~~~~P~~ir~~r~ 625 (654)
..+++.+....++|++|.....
T Consensus 217 ~~a~~~a~~~~~~P~lI~~~T~ 238 (654)
T PLN02790 217 RAAIKEAKAVTDKPTLIKVTTT 238 (654)
T ss_pred HHHHHHHHhcCCCeEEEEEEEe
Confidence 7788877433678999976544
No 275
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=60.67 E-value=1.1e+02 Score=35.27 Aligned_cols=117 Identities=19% Similarity=0.135 Sum_probs=69.2
Q ss_pred CCccccchhHHHHHHHHHHHHhc-CCeeEEee-hHHHHHhHHHHHHHhhhcCCCCEEEEEecCCc--cCCCCCC-CCC--
Q 006251 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPT-HCG-- 579 (654)
Q Consensus 507 ~R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~t-fa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~--~g~dG~t-Hq~-- 579 (654)
=|++.+ --|++..-+|-|+|.. |...+|.+ ..+=...++.-| ..+...+.||+++...... .+.+... ||.
T Consensus 39 i~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~gi-a~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~ 116 (535)
T TIGR03394 39 LPLHTL-SHEPAVGFAADAAARYRGTLGVAAVTYGAGAFNMVNAI-AGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRT 116 (535)
T ss_pred CeEEcc-cCcchHHHHHhHHHHhhCCceEEEEecchHHHhhhhHH-HHHhhcCCCEEEEECCCCcccccCCceeEeeccc
Confidence 377775 8999999999999997 65555544 444333444333 3444578999998633221 1322223 443
Q ss_pred hh-hHHHHhcCCCC--EEEecCC-HHHHHHHHHHHHhCCCCcEEEEecCCC
Q 006251 580 AF-DVTFMSCLPNM--VVMAPSD-EAELMHMVATAAVIDDRPSCFRFPRGN 626 (654)
Q Consensus 580 ~e-dla~~r~iPnl--~V~~PsD-~~E~~~ll~~al~~~~~P~~ir~~r~~ 626 (654)
.. ...+++.+--. .|..|.+ +..+..+++.|+. ..+|++|-+|+..
T Consensus 117 ~~~~~~~~~~vtk~~~~v~~~~~~~~~~~~A~~~a~~-~~gPv~i~iP~Dv 166 (535)
T TIGR03394 117 LDSQFQVFKEVTCDQAVLDDPATAPAEIARVLGSARE-LSRPVYLEIPRDM 166 (535)
T ss_pred hHHHHHhhhhheEEEEEeCChHHhHHHHHHHHHHHHH-CCCCEEEEechhh
Confidence 22 23555654322 2333444 3345566777764 5789999999864
No 276
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=58.65 E-value=1.3e+02 Score=34.64 Aligned_cols=146 Identities=12% Similarity=0.051 Sum_probs=74.9
Q ss_pred HHHHHHHHHhhCCcEEEEecCccCCC-ChhhHHHhCCCCccccchhHHHHHHH----HHHHHhc--CCeeEEee-hHHHH
Q 006251 471 FAESLIKEAETDDKIVAIHAAMGGGT-GLNYFQKRFPDRCFDVGIAEQHAVTF----AAGLASE--GVKPFCAI-YSSFL 542 (654)
Q Consensus 471 ~~~aL~~~~~~d~~vvvl~aDlg~s~-~l~~f~~~fp~R~id~GIaE~~mvg~----AaGlA~~--G~~Pi~~t-fa~Fl 542 (654)
+.+.|.+.+.+ +.+++. |.|... ....+.-..|.+++..+ -.+.+|. |.|.++. +.++++-+ -..|+
T Consensus 361 ~~~~l~~~l~~-~~iiv~--d~G~~~~~~~~~~~~~~~~~~~~~--~~g~mG~glpaaiGa~la~p~~~vv~i~GDG~f~ 435 (539)
T TIGR03393 361 FWQTLQTFLRP-GDIILA--DQGTSAFGAADLRLPADVNFIVQP--LWGSIGYTLPAAFGAQTACPNRRVILLIGDGSAQ 435 (539)
T ss_pred HHHHHHHhcCC-CCEEEE--ccCchhhhhhhccCCCCCeEEech--hhhhhhhHHHHHHHHHhcCCCCCeEEEEcCcHHH
Confidence 55556666653 344433 434322 11111111245666543 2343443 4444444 34444444 78887
Q ss_pred HhHHHHHHHhhhcCCCCEEEEE-ecCCcc----CCC-CCCCC--ChhhHHHHhcCCCC----EEEecCCHHHHHHHHHHH
Q 006251 543 QRGYDQVVHDVDLQKLPVRFAM-DRAGLV----GAD-GPTHC--GAFDVTFMSCLPNM----VVMAPSDEAELMHMVATA 610 (654)
Q Consensus 543 ~ra~dQI~~~~a~~~lpV~~v~-~~~G~~----g~d-G~tHq--~~edla~~r~iPnl----~V~~PsD~~E~~~ll~~a 610 (654)
+-.-| +..+...++|++++. ...++. -.. +..+. ...|.+-+..--|. +-+.-.+..|+...++.+
T Consensus 436 m~~~E--L~Ta~~~~lpi~~vV~NN~~y~~i~~~~~~~~~~~~~~~~df~~la~a~G~~~~~~~~~v~~~~el~~al~~a 513 (539)
T TIGR03393 436 LTIQE--LGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYNDIALWNWTHLPQALSLDPQSECWRVSEAEQLADVLEKV 513 (539)
T ss_pred hHHHH--HHHHHHcCCCCEEEEEeCCceEEEEeecCCCCCcCcCCCCCHHHHHHHcCCCCccceEEeccHHHHHHHHHHH
Confidence 55433 344567789977766 344431 010 11111 11232222322243 367779999999999999
Q ss_pred HhCCCCcEEEEecC
Q 006251 611 AVIDDRPSCFRFPR 624 (654)
Q Consensus 611 l~~~~~P~~ir~~r 624 (654)
++ .++|++|-..-
T Consensus 514 ~~-~~~p~liev~i 526 (539)
T TIGR03393 514 AA-HERLSLIEVVL 526 (539)
T ss_pred hc-cCCeEEEEEEc
Confidence 75 68999986643
No 277
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=58.58 E-value=81 Score=30.14 Aligned_cols=48 Identities=15% Similarity=0.277 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHH-HHhhcCCCEEEEEECCC
Q 006251 259 ISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMN-NAGFLDANLIVVLNDNK 314 (654)
Q Consensus 259 is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln-~A~~~~lnLi~Il~dN~ 314 (654)
+++|.|+|+ .| .+.+++.. ..+. ..+++.+. .++.++.|++++....+
T Consensus 52 vg~A~GlA~----~G-~~pi~~~~--~~f~-~ra~dqi~~~~a~~~~pv~~~~~~~g 100 (156)
T cd07033 52 VGIAAGLAL----HG-LKPFVSTF--SFFL-QRAYDQIRHDVALQNLPVKFVGTHAG 100 (156)
T ss_pred HHHHHHHHH----CC-CeEEEEEC--HHHH-HHHHHHHHHHHhccCCCeEEEEECCc
Confidence 556666664 34 34444444 3333 37888887 77888999999998664
No 278
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=57.13 E-value=47 Score=36.69 Aligned_cols=103 Identities=17% Similarity=0.202 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhcCCee-EEee-hHHH--HHhHHHHHHHhhhcCCCCEEEEEecCCc-cCCCCCCCCChhhH----HHHhc
Q 006251 518 HAVTFAAGLASEGVKP-FCAI-YSSF--LQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDV----TFMSC 588 (654)
Q Consensus 518 ~mvg~AaGlA~~G~~P-i~~t-fa~F--l~ra~dQI~~~~a~~~lpV~~v~~~~G~-~g~dG~tHq~~edl----a~~r~ 588 (654)
+.+|.|-++-+.|... ++.+ |.+= .+-.+-.-+|.++..++||+|++-.-+. .+ ---..|...++ +.--.
T Consensus 144 ~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEalN~A~v~klPvvf~ieNN~yAiS-vp~~~q~~~~~~~~ra~ayg 222 (358)
T COG1071 144 LAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEALNFAAVWKLPVVFVIENNQYAIS-VPRSRQTAAEIIAARAAAYG 222 (358)
T ss_pred HHHHHHHHHHHhCCCCcEEEEEecCCccccchHHHHHHHHHHhcCCEEEEEecCCceee-cchhhcccchhHHhhhhccC
Confidence 3444444444456333 4444 4221 1222222368899999999999966554 22 11122333332 23347
Q ss_pred CCCCEEEecCCHHHHHHHHHHHHh---CCCCcEEEEe
Q 006251 589 LPNMVVMAPSDEAELMHMVATAAV---IDDRPSCFRF 622 (654)
Q Consensus 589 iPnl~V~~PsD~~E~~~ll~~al~---~~~~P~~ir~ 622 (654)
||++.| -=.|...+..+++.|++ ..++|++|-.
T Consensus 223 ipgv~V-DG~D~~avy~~~~~A~e~AR~g~GPtLIE~ 258 (358)
T COG1071 223 IPGVRV-DGNDVLAVYEAAKEAVERARAGEGPTLIEA 258 (358)
T ss_pred CCeEEE-CCcCHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 899999 55666666555555543 3668999843
No 279
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=57.03 E-value=72 Score=31.05 Aligned_cols=49 Identities=24% Similarity=0.305 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEEC
Q 006251 258 SISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLND 312 (654)
Q Consensus 258 ~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~d 312 (654)
+.-+|-|.|.+ .++...+++..|=|..+ ..-++..|.....||++|.-+
T Consensus 47 A~~mAdgyar~---sg~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~ 95 (162)
T cd07037 47 AAFFALGLAKA---SGRPVAVVCTSGTAVAN---LLPAVVEAYYSGVPLLVLTAD 95 (162)
T ss_pred HHHHHHHHHHh---hCCCEEEEECCchHHHH---HhHHHHHHHhcCCCEEEEECC
Confidence 34455555543 34444455555666665 345677777778999999854
No 280
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=56.90 E-value=1.5e+02 Score=34.68 Aligned_cols=39 Identities=23% Similarity=0.330 Sum_probs=32.2
Q ss_pred CCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECC
Q 006251 274 KNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDN 313 (654)
Q Consensus 274 ~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN 313 (654)
.|=.|.++.+|-+++. ++.||+.+|..-+-|+++-+|-=
T Consensus 225 tDIvVLVVAadDGVmp-QT~EaIkhAk~A~VpiVvAinKi 263 (683)
T KOG1145|consen 225 TDIVVLVVAADDGVMP-QTLEAIKHAKSANVPIVVAINKI 263 (683)
T ss_pred ccEEEEEEEccCCccH-hHHHHHHHHHhcCCCEEEEEecc
Confidence 4667888888888886 89999999998888888887643
No 281
>PTZ00089 transketolase; Provisional
Probab=56.70 E-value=78 Score=37.81 Aligned_cols=90 Identities=12% Similarity=0.072 Sum_probs=57.0
Q ss_pred eeEEee-hHHHH-HhHHHHHHHhhhcCCCC-EEEEEecCCccCCCCCCCCC-hhhH-HHHhcCCCCEEEecCC----HHH
Q 006251 532 KPFCAI-YSSFL-QRGYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHCG-AFDV-TFMSCLPNMVVMAPSD----EAE 602 (654)
Q Consensus 532 ~Pi~~t-fa~Fl-~ra~dQI~~~~a~~~lp-V~~v~~~~G~~g~dG~tHq~-~edl-a~~r~iPnl~V~~PsD----~~E 602 (654)
+.+|.+ -..+. -.+++. ++.++..++| ++++.+.-+. .-+|+++-. .+++ ..++++ |+.++.+.| -.+
T Consensus 150 ~v~~v~GDG~l~eG~~~EA-l~~A~~~~L~nLi~i~d~N~~-~i~~~~~~~~~~~~~~~f~a~-G~~~i~v~dG~~D~~~ 226 (661)
T PTZ00089 150 YVYVICGDGCLQEGVSQEA-LSLAGHLGLEKLIVLYDDNKI-TIDGNTDLSFTEDVEKKYEAY-GWHVIEVDNGNTDFDG 226 (661)
T ss_pred EEEEEECccchhhHHHHHH-HHHHHHhCCCCEEEEEECCCc-ccccCcccccCccHHHHHHhc-CCcEEEeCCCCCCHHH
Confidence 345544 45554 255666 4677888986 6777777764 345666532 2343 356777 999999964 555
Q ss_pred HHHHHHHHHhCCCCcEEEEecC
Q 006251 603 LMHMVATAAVIDDRPSCFRFPR 624 (654)
Q Consensus 603 ~~~ll~~al~~~~~P~~ir~~r 624 (654)
+..+++.+....++|++|....
T Consensus 227 l~~a~~~a~~~~~~P~~I~~~T 248 (661)
T PTZ00089 227 LRKAIEEAKKSKGKPKLIIVKT 248 (661)
T ss_pred HHHHHHHHHhcCCCcEEEEEEe
Confidence 6666666644346899997654
No 282
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=56.51 E-value=48 Score=36.17 Aligned_cols=89 Identities=10% Similarity=0.013 Sum_probs=46.2
Q ss_pred eeEEee--hHHHHHhHHHHHHHhhhcCCCCEEEEEecCCccCCCCCCCC--ChhhHHHHhcCCCCEEEecCCHHH-----
Q 006251 532 KPFCAI--YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHC--GAFDVTFMSCLPNMVVMAPSDEAE----- 602 (654)
Q Consensus 532 ~Pi~~t--fa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~~g~dG~tHq--~~edla~~r~iPnl~V~~PsD~~E----- 602 (654)
++++.+ -..|.+-.+-+-++.++..++||++++-..++.. ..++.. ...|++-...--|+..+.-...++
T Consensus 145 ~~vv~~~GDGa~~~g~~~EaL~tA~~~~LPvi~Vv~NN~~~~-~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~ 223 (341)
T TIGR03181 145 NVAVTYFGDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQWAI-SVPRSKQTAAPTLAQKAIAYGIPGVQVDGNDVLAVYA 223 (341)
T ss_pred CEEEEEecCCccccChHHHHHHHHhccCCCEEEEEECCCCcc-ccchhhhhCCcCHHHHHhhCCCCEEEECCCCHHHHHH
Confidence 445555 4556543333335778889999999987665321 112221 223333222222443333222222
Q ss_pred -HHHHHHHHHhCCCCcEEEEe
Q 006251 603 -LMHMVATAAVIDDRPSCFRF 622 (654)
Q Consensus 603 -~~~ll~~al~~~~~P~~ir~ 622 (654)
+..+++.+. ..++|++|-.
T Consensus 224 a~~~A~~~a~-~~~gP~lIev 243 (341)
T TIGR03181 224 VTKEAVERAR-SGGGPTLIEA 243 (341)
T ss_pred HHHHHHHHHH-cCCCCEEEEE
Confidence 356677774 4679999865
No 283
>PRK12753 transketolase; Reviewed
Probab=55.80 E-value=49 Score=39.55 Aligned_cols=80 Identities=16% Similarity=0.095 Sum_probs=50.6
Q ss_pred hHHHHHHHhhhcCCCC-EEEEEecCCccCCCCCCCCC-hhhHH-HHhcCCCCEEEecCCHHHHHHH---HHHHHhCCCCc
Q 006251 544 RGYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHCG-AFDVT-FMSCLPNMVVMAPSDEAELMHM---VATAAVIDDRP 617 (654)
Q Consensus 544 ra~dQI~~~~a~~~lp-V~~v~~~~G~~g~dG~tHq~-~edla-~~r~iPnl~V~~PsD~~E~~~l---l~~al~~~~~P 617 (654)
..++. .+.++..++| ++++.+.-++ .-+|+++.. .++++ .++++ |+.++.+.|.+|...+ ++.+....++|
T Consensus 162 ~~~EA-~~~A~~~kL~nLi~ivd~N~~-~i~~~~~~~~~~~~~~~f~a~-Gw~~~~~vDGhD~~~i~~a~~~a~~~~~~P 238 (663)
T PRK12753 162 ISHEV-CSLAGTLGLGKLIGFYDHNGI-SIDGETEGWFTDDTAKRFEAY-HWHVIHEIDGHDPQAIKEAILEAQSVKDKP 238 (663)
T ss_pred HHHHH-HHHHHHHCCCCEEEEEECCCC-cCCCChhhhcChhHHHHHHHc-CCeEEceeCCCCHHHHHHHHHHHHHCCCCe
Confidence 44565 4778888997 6777777664 235555442 23433 35566 9999977777665555 44453345789
Q ss_pred EEEEecCCC
Q 006251 618 SCFRFPRGN 626 (654)
Q Consensus 618 ~~ir~~r~~ 626 (654)
++|......
T Consensus 239 ~~I~~~T~k 247 (663)
T PRK12753 239 SLIICRTII 247 (663)
T ss_pred EEEEEEEee
Confidence 999766443
No 284
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=55.51 E-value=19 Score=32.95 Aligned_cols=41 Identities=44% Similarity=0.682 Sum_probs=22.7
Q ss_pred hhhcCCeEEe-ecCCCCH-HHHHHHHHHhHhCCCCCCEEEEEEe
Q 006251 387 FEELGLYYIG-PVDGHNV-EDLVTIFQRVKEMPAPGPVLIHVVT 428 (654)
Q Consensus 387 fea~G~~~ig-~vDGhDi-~~L~~al~~ak~~~~~gP~lI~v~T 428 (654)
++++|+.|+. ||++.++ ++-+++|.++.+. .++|+++||+|
T Consensus 53 a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~-~~~Pvl~hC~s 95 (110)
T PF04273_consen 53 AEALGLQYVHIPVDGGAITEEDVEAFADALES-LPKPVLAHCRS 95 (110)
T ss_dssp HHHCT-EEEE----TTT--HHHHHHHHHHHHT-TTTSEEEE-SC
T ss_pred HHHcCCeEEEeecCCCCCCHHHHHHHHHHHHh-CCCCEEEECCC
Confidence 7788877653 5665443 3344555555543 37899999987
No 285
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=54.88 E-value=88 Score=37.52 Aligned_cols=50 Identities=8% Similarity=0.248 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHH-HHHHhhcCCCEEEEEECCCC
Q 006251 258 SISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEA-MNNAGFLDANLIVVLNDNKQ 315 (654)
Q Consensus 258 ~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EA-ln~A~~~~lnLi~Il~dN~~ 315 (654)
.++.|.|||+ .| -+.|++++. .+.. -+++- .+.++..++|++++++..+.
T Consensus 410 ~vg~AaGLA~----~G-~kPvv~~fs--~Fl~-RA~DQI~~dval~~lpVv~v~~~aG~ 460 (677)
T PLN02582 410 AVTFAAGLAC----EG-LKPFCAIYS--SFLQ-RGYDQVVHDVDLQKLPVRFAMDRAGL 460 (677)
T ss_pred HHHHHHHHHH----CC-CeEEEEecH--HHHH-HHHHHHHHHHHhcCCCEEEEEECCCc
Confidence 3556666665 33 455666544 4443 56664 46678889999999987764
No 286
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=54.80 E-value=41 Score=42.58 Aligned_cols=113 Identities=19% Similarity=0.115 Sum_probs=72.7
Q ss_pred CccccchhHHHHHHHHHHHHhcCCee---------EEeehHHHHHhHHHHHHHhhhcCCC----C-EEEEEecCCccCCC
Q 006251 508 RCFDVGIAEQHAVTFAAGLASEGVKP---------FCAIYSSFLQRGYDQVVHDVDLQKL----P-VRFAMDRAGLVGAD 573 (654)
Q Consensus 508 R~id~GIaE~~mvg~AaGlA~~G~~P---------i~~tfa~Fl~ra~dQI~~~~a~~~l----p-V~~v~~~~G~~g~d 573 (654)
-+|+-++.|--...++.|-++.|..| +++.=.+=+.++-|-+++ +++... - |+++++.-|...
T Consensus 75 i~~e~~~NEkvA~e~a~Gaq~~~~~~~~~~~Gv~~l~~~K~~GvnvaaD~l~~-~n~~G~~~~GG~v~v~gDDpg~~S-- 151 (1159)
T PRK13030 75 IRFLPGINEELAATAVLGTQQVEADPERTVDGVFAMWYGKGPGVDRAGDALKH-GNAYGSSPHGGVLVVAGDDHGCVS-- 151 (1159)
T ss_pred eEEeecCCHHHHHHHHHHhccccccCCccccceEEEEecCcCCcccchhHHHH-HHhhcCCCCCcEEEEEecCCCCcc--
Confidence 68889999999999999999766666 332212224688898764 334332 2 444444444211
Q ss_pred CCCCCChhhHHHHhcCCCCEEEecCCHHHHHHHHHHHHhC---CCCcEEEEecCCC
Q 006251 574 GPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVI---DDRPSCFRFPRGN 626 (654)
Q Consensus 574 G~tHq~~edla~~r~iPnl~V~~PsD~~E~~~ll~~al~~---~~~P~~ir~~r~~ 626 (654)
-.+-| |--++...-+|-|+.|+|+.|++.+.+.+++- .+-||.||.....
T Consensus 152 Sq~eq---dSr~~~~~a~iPvl~Ps~~qE~~d~~~~a~~lSr~~~~pV~lr~~t~v 204 (1159)
T PRK13030 152 SSMPH---QSDFALIAWHMPVLNPANVQEYLDFGLYGWALSRYSGAWVGFKAISET 204 (1159)
T ss_pred CcCHH---HHHHHHHHcCCceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE
Confidence 11122 22344555567799999999999998877653 4569999876543
No 287
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=54.10 E-value=78 Score=37.70 Aligned_cols=49 Identities=10% Similarity=0.285 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHH-HHHhhcCCCEEEEEECCCC
Q 006251 259 ISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAM-NNAGFLDANLIVVLNDNKQ 315 (654)
Q Consensus 259 is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAl-n~A~~~~lnLi~Il~dN~~ 315 (654)
+++|.|||+. | -+.+++++. .+.. -+++-+ +.++..++|++++++..+.
T Consensus 412 Vg~AaGLA~~----G-~rPvv~~fs--~Fl~-RA~DQI~~dva~~~lpV~~v~~~aG~ 461 (641)
T PLN02234 412 VTFAAGLACE----G-LKPFCTIYS--SFMQ-RAYDQVVHDVDLQKLPVRFAIDRAGL 461 (641)
T ss_pred HHHHHHHHHC----C-CeEEEEehH--HHHH-HHHHHHHHHHhhcCCCEEEEEeCCcc
Confidence 5566666652 3 344555543 3333 566655 5567889999999987764
No 288
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=53.77 E-value=55 Score=37.49 Aligned_cols=117 Identities=25% Similarity=0.288 Sum_probs=69.0
Q ss_pred hHHHhCCCCccccchhHHHHHHHHHHHHhc------CCeeEEe-ehHHHHHhHHHHHHHhhhcCCCCEEEEEe-cCCccC
Q 006251 500 YFQKRFPDRCFDVGIAEQHAVTFAAGLASE------GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMD-RAGLVG 571 (654)
Q Consensus 500 ~f~~~fp~R~id~GIaE~~mvg~AaGlA~~------G~~Pi~~-tfa~Fl~ra~dQI~~~~a~~~lpV~~v~~-~~G~~g 571 (654)
-+..+-|.|-.|.|-- +-+|+..|+|+. +.+.+|- --+.|-.-++| +..++..++||+++.- ..|+.|
T Consensus 414 ~l~~~~Pr~rLDaGtf--gTMGVG~Gfalaaa~~~P~~~V~~veGDsaFGfSaME--~ET~vR~~Lpvv~vV~NN~Giyg 489 (571)
T KOG1185|consen 414 LLPPRGPRRRLDAGTF--GTMGVGLGFALAAALAAPDRKVVCVEGDSAFGFSAME--LETFVRYKLPVVIVVGNNNGIYG 489 (571)
T ss_pred hccCCCcccccCCccc--cccccchhHHHHHHhhCCCCeEEEEecCcccCcchhh--HHHHHHhcCCeEEEEecCCcccc
Confidence 4555668888887643 333444444442 4443332 26777655655 3455678999887764 667654
Q ss_pred CC--CCCCCC----hhhHHHHhcCCC-----------CEEEecCCHHHHHHHHHHHHhCCCCcEEE
Q 006251 572 AD--GPTHCG----AFDVTFMSCLPN-----------MVVMAPSDEAELMHMVATAAVIDDRPSCF 620 (654)
Q Consensus 572 ~d--G~tHq~----~edla~~r~iPn-----------l~V~~PsD~~E~~~ll~~al~~~~~P~~i 620 (654)
.| |.+.-. ..++..+..++| .+=+.=.++.|+..+++.+.+..+.|++|
T Consensus 490 ~d~~~~~~I~e~~~~~~~p~~~l~~~~rY~~v~ka~G~kG~~v~t~~el~~~l~~a~q~~~~psvI 555 (571)
T KOG1185|consen 490 LDDDGWKQISEQDPTLDLPPTALLANTRYDKVAKAFGGKGYFVSTVEELLAALQQACQDTDKPSVI 555 (571)
T ss_pred cCcccHHHHhhcCcccCCCcccccccccHHHHHHHcCCCceeeCCHHHHHHHHHHHHhcCCCCeEE
Confidence 33 222111 122222333333 33455569999999999999888899888
No 289
>PRK12754 transketolase; Reviewed
Probab=52.49 E-value=1e+02 Score=36.96 Aligned_cols=80 Identities=18% Similarity=0.122 Sum_probs=49.3
Q ss_pred hHHHHHHHhhhcCCCC-EEEEEecCCccCCCCCCCCC-hhhHHH-HhcCCCCEEEecCCHHHHHH---HHHHHHhCCCCc
Q 006251 544 RGYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHCG-AFDVTF-MSCLPNMVVMAPSDEAELMH---MVATAAVIDDRP 617 (654)
Q Consensus 544 ra~dQI~~~~a~~~lp-V~~v~~~~G~~g~dG~tHq~-~edla~-~r~iPnl~V~~PsD~~E~~~---ll~~al~~~~~P 617 (654)
..+|. .+.++..+|| ++++.+.-++ .-+|++... .+|++- +++. |+.|+...|.+|..+ +++.+....++|
T Consensus 162 ~~~EA-~~~A~~~kL~nLi~ivD~N~~-~idg~~~~~~~~~~~~r~~a~-Gw~vi~vvDG~D~~ai~~A~~~a~~~~~~P 238 (663)
T PRK12754 162 ISHEV-CSLAGTLKLGKLIAFYDDNGI-SIDGHVEGWFTDDTAMRFEAY-GWHVIRGIDGHDADSIKRAVEEARAVTDKP 238 (663)
T ss_pred HHHHH-HHHHHHhCCCCEEEEEEcCCC-ccCcchhhccCccHHHHHHhc-CCeEEeeECCCCHHHHHHHHHHHHhcCCCC
Confidence 44555 4678889998 5677777774 346776543 244433 4444 888776446555554 445453345789
Q ss_pred EEEEecCCC
Q 006251 618 SCFRFPRGN 626 (654)
Q Consensus 618 ~~ir~~r~~ 626 (654)
++|....-.
T Consensus 239 t~I~~~T~~ 247 (663)
T PRK12754 239 SLLMCKTII 247 (663)
T ss_pred EEEEEEeee
Confidence 999876543
No 290
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=52.37 E-value=2.2e+02 Score=33.24 Aligned_cols=149 Identities=17% Similarity=0.137 Sum_probs=84.5
Q ss_pred HHHHHHHHhhCCcEEEEecCccCCCCh---hhHHHhCCCCccccchhHHHHHHHHHHHHhc-CCeeEEee-hHHHHHhHH
Q 006251 472 AESLIKEAETDDKIVAIHAAMGGGTGL---NYFQKRFPDRCFDVGIAEQHAVTFAAGLASE-GVKPFCAI-YSSFLQRGY 546 (654)
Q Consensus 472 ~~aL~~~~~~d~~vvvl~aDlg~s~~l---~~f~~~fp~R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~t-fa~Fl~ra~ 546 (654)
++.|.+.+++..-=.+++-- |..-+ +.|.+. .=|++.+ --||+...+|.|+|.. |..-+|-. -.+=+..+.
T Consensus 5 a~~lv~~L~~~GV~~VFGiP--G~~i~~~~dal~~~-~i~~I~~-RHEq~Aa~mAdgyar~TGkpgV~~~tsGPGatN~~ 80 (550)
T COG0028 5 AEALVEALEANGVDTVFGIP--GGSILPLYDALYDS-GIRHILV-RHEQGAAFAADGYARATGKPGVCLVTSGPGATNLL 80 (550)
T ss_pred HHHHHHHHHHcCCcEEEeCC--CccHHHHHHHHHhC-CCcEEEe-ccHHHHHHHHHHHHHHcCCCEEEEECCCCcHHHHH
Confidence 34555666655432334321 11211 444444 4577776 8999999999999996 77666654 322122222
Q ss_pred HHHHHhhhcCCCCEEEEEecCCccCCCCCCCCChhhHHHHhcCCCCEEEecCCHHHHHHHHHHHHh----CCCCcEEEEe
Q 006251 547 DQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAV----IDDRPSCFRF 622 (654)
Q Consensus 547 dQI~~~~a~~~lpV~~v~~~~G~~g~dG~tHq~~edla~~r~iPnl~V~~PsD~~E~~~ll~~al~----~~~~P~~ir~ 622 (654)
.- +.++-.-+.||+++........-.=-.+|-....++++.+-. ..+...+++|+-..++.|++ ...+|++|-+
T Consensus 81 tg-la~A~~d~~Pll~itGqv~~~~~g~~afQe~D~~~l~~p~tk-~~~~v~~~~~ip~~i~~Af~~A~sgrpGpv~i~i 158 (550)
T COG0028 81 TG-LADAYMDSVPLLAITGQVPTSLIGTDAFQEVDQVGLFRPITK-YNFEVRSPEDIPEVVARAFRIALSGRPGPVVVDL 158 (550)
T ss_pred HH-HHHHHhcCCCEEEEeCCccccccCcchhhhcchhhHhhhhhe-eEEEeCCHHHHHHHHHHHHHHHhcCCCceEEEEc
Confidence 22 234445688999885322211111124555555555555532 34666777777766665543 3558999999
Q ss_pred cCCC
Q 006251 623 PRGN 626 (654)
Q Consensus 623 ~r~~ 626 (654)
|+--
T Consensus 159 P~Dv 162 (550)
T COG0028 159 PKDV 162 (550)
T ss_pred ChhH
Confidence 9864
No 291
>PRK05899 transketolase; Reviewed
Probab=52.21 E-value=1.2e+02 Score=35.89 Aligned_cols=91 Identities=14% Similarity=0.118 Sum_probs=56.3
Q ss_pred eeEEee-hHHHHH-hHHHHHHHhhhcCCCC-EEEEEecCCccCCCCCCCC-ChhhHH-HHhcCCCCEEEecC--CHHHHH
Q 006251 532 KPFCAI-YSSFLQ-RGYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHC-GAFDVT-FMSCLPNMVVMAPS--DEAELM 604 (654)
Q Consensus 532 ~Pi~~t-fa~Fl~-ra~dQI~~~~a~~~lp-V~~v~~~~G~~g~dG~tHq-~~edla-~~r~iPnl~V~~Ps--D~~E~~ 604 (654)
+.+|-+ -..|.. ..++.+ +.++..++| ++++....++ +-++++.. ..+|++ .++.+ |+.++.-- |..++.
T Consensus 152 ~v~~v~GDG~~~~g~~~Eal-~~A~~~~L~~li~v~dnN~~-~~~~~~~~~~~~~~~~~~~a~-G~~~~~VdG~d~~~l~ 228 (624)
T PRK05899 152 YTYVLCGDGDLMEGISHEAC-SLAGHLKLGNLIVIYDDNRI-SIDGPTEGWFTEDVKKRFEAY-GWHVIEVDGHDVEAID 228 (624)
T ss_pred eEEEEECcchhhchHHHHHH-HHHHHhCCCCEEEEEECCCC-cccccccccccccHHHHhccC-CCeEEEECCCCHHHHH
Confidence 444444 667653 235543 556778887 6667766664 22333322 124443 34444 88888766 799999
Q ss_pred HHHHHHHhCCCCcEEEEecCCC
Q 006251 605 HMVATAAVIDDRPSCFRFPRGN 626 (654)
Q Consensus 605 ~ll~~al~~~~~P~~ir~~r~~ 626 (654)
.+++.+.. .++|++|......
T Consensus 229 ~al~~a~~-~~~P~vI~v~t~k 249 (624)
T PRK05899 229 AAIEEAKA-STKPTLIIAKTII 249 (624)
T ss_pred HHHHHHHh-cCCCEEEEEEeEe
Confidence 99998864 5789998765433
No 292
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=50.67 E-value=65 Score=35.24 Aligned_cols=88 Identities=17% Similarity=0.178 Sum_probs=46.2
Q ss_pred eeEEee--hHHHHH-hHHHHHHHhhhcCCCCEEEEEecCCc-cCC--CCCCCC-ChhhHHHHhcCCCCEEEecCCHHHH-
Q 006251 532 KPFCAI--YSSFLQ-RGYDQVVHDVDLQKLPVRFAMDRAGL-VGA--DGPTHC-GAFDVTFMSCLPNMVVMAPSDEAEL- 603 (654)
Q Consensus 532 ~Pi~~t--fa~Fl~-ra~dQI~~~~a~~~lpV~~v~~~~G~-~g~--dG~tHq-~~edla~~r~iPnl~V~~PsD~~E~- 603 (654)
++++.+ -..|.. ..++. ++.++..++||++++...++ .+. ...+.. ...+.+-.-.+|++.|=- .|..++
T Consensus 158 ~vvv~~~GDGa~~~G~~~Ea-ln~A~~~~LPvifvv~NN~~~i~~~~~~~~~~~d~a~~a~a~G~~~~~Vdg-~d~~av~ 235 (341)
T CHL00149 158 RVTACFFGDGTTNNGQFFEC-LNMAVLWKLPIIFVVENNQWAIGMAHHRSTSIPEIHKKAEAFGLPGIEVDG-MDVLAVR 235 (341)
T ss_pred CEEEEEeCCchhhhcHHHHH-HHHHhhcCCCEEEEEEeCCeeeecchhheeCCccHHHHHHhCCCCEEEEeC-CCHHHHH
Confidence 444444 455542 12233 46778889999999866653 221 111111 123333334567776633 344333
Q ss_pred ---HHHHHHHHhCCCCcEEEEe
Q 006251 604 ---MHMVATAAVIDDRPSCFRF 622 (654)
Q Consensus 604 ---~~ll~~al~~~~~P~~ir~ 622 (654)
+.+++.+. ..++|++|-.
T Consensus 236 ~a~~~A~~~ar-~~~gP~lIev 256 (341)
T CHL00149 236 EVAKEAVERAR-QGDGPTLIEA 256 (341)
T ss_pred HHHHHHHHHHH-hCCCCEEEEE
Confidence 45566664 3578998854
No 293
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=50.01 E-value=98 Score=34.10 Aligned_cols=35 Identities=23% Similarity=0.450 Sum_probs=24.1
Q ss_pred hhhc-CCeEEeecCCCCHHHHHHHHHHhHhCCCCCCEEEEE
Q 006251 387 FEEL-GLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHV 426 (654)
Q Consensus 387 fea~-G~~~ig~vDGhDi~~L~~al~~ak~~~~~gP~lI~v 426 (654)
++.+ |+.++.|. |.+++...++.+.+. ++|++|..
T Consensus 160 lr~iPnl~V~~Pa---d~~e~~~~l~~a~~~--~gPv~ir~ 195 (356)
T PLN02683 160 YSSVPGLKVLAPY---SSEDARGLLKAAIRD--PDPVVFLE 195 (356)
T ss_pred HhcCCCCEEEEeC---CHHHHHHHHHHHHhC--CCcEEEEE
Confidence 4443 78888785 566677777777653 68999863
No 294
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=48.58 E-value=1.1e+02 Score=36.01 Aligned_cols=112 Identities=13% Similarity=0.211 Sum_probs=64.1
Q ss_pred cccchhHHHHHHHHHHHHhc-----C-CeeEEee--hHHHH-HhHHHHHHHhhhcCCCCEEEEEecCCccCCCCCCC---
Q 006251 510 FDVGIAEQHAVTFAAGLASE-----G-VKPFCAI--YSSFL-QRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTH--- 577 (654)
Q Consensus 510 id~GIaE~~mvg~AaGlA~~-----G-~~Pi~~t--fa~Fl-~ra~dQI~~~~a~~~lpV~~v~~~~G~~g~dG~tH--- 577 (654)
+.+|.-=+ -+++|.|+|+. + .++++++ -..|. ...++.+ +.++..+.|++++.+..++. -++++-
T Consensus 114 ~~~G~lG~-gl~~AvG~A~a~~~~~~~~~~v~~i~GDG~l~eG~~~Eal-~~A~~~~~nli~IvdnN~~~-i~~~~~~~~ 190 (580)
T PRK05444 114 FGAGHSST-SISAALGMAKARDLKGGEDRKVVAVIGDGALTGGMAFEAL-NNAGDLKSDLIVILNDNEMS-ISPNVGALS 190 (580)
T ss_pred ECCChHHH-HHHHHHHHHHHHHhhCCCCCeEEEEEcccccccCHHHHHH-HHHHhhCCCEEEEEECCCCc-CCCcchhhh
Confidence 34443333 34566676653 1 2345554 44443 2445554 55666679999998887753 334431
Q ss_pred --CChhhH-HHHhcCCCCEEEec---CCHHHHHHHHHHHHhCCCCcEEEEecCCC
Q 006251 578 --CGAFDV-TFMSCLPNMVVMAP---SDEAELMHMVATAAVIDDRPSCFRFPRGN 626 (654)
Q Consensus 578 --q~~edl-a~~r~iPnl~V~~P---sD~~E~~~ll~~al~~~~~P~~ir~~r~~ 626 (654)
...+++ ..++++ |+.++.+ .|..++..+++.+. ..++|++|......
T Consensus 191 ~~~~~~~~~~~~~a~-G~~~~~~vdG~d~~~l~~al~~a~-~~~~P~lI~~~T~k 243 (580)
T PRK05444 191 NYLARLRSSTLFEEL-GFNYIGPIDGHDLDALIETLKNAK-DLKGPVLLHVVTKK 243 (580)
T ss_pred hhhccccHHHHHHHc-CCCeeeeeCCCCHHHHHHHHHHHH-hCCCCEEEEEEecC
Confidence 111222 234444 7776654 78888888888875 45799988655443
No 295
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=48.22 E-value=43 Score=42.44 Aligned_cols=113 Identities=15% Similarity=0.053 Sum_probs=71.3
Q ss_pred CccccchhHHHHHHHHHHH---------HhcCCeeEEeehHHHHHhHHHHHHHhhhcCCC----C-EEEEEecCCccCCC
Q 006251 508 RCFDVGIAEQHAVTFAAGL---------ASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKL----P-VRFAMDRAGLVGAD 573 (654)
Q Consensus 508 R~id~GIaE~~mvg~AaGl---------A~~G~~Pi~~tfa~Fl~ra~dQI~~~~a~~~l----p-V~~v~~~~G~~g~d 573 (654)
-+|+-++.|--...++.|- +..|.+.+++.=.+=+.|+-|-+++. ++... - |+++++.-|...
T Consensus 83 i~fe~~~NEkvAae~~~GsQ~~~~~~~a~~~Gv~~l~y~K~pGvn~aaD~l~~~-n~~G~~~~GGvv~v~gDDpg~~S-- 159 (1165)
T PRK09193 83 IVFQPGLNEDLAATAVWGSQQVNLFPGAKYDGVFGMWYGKGPGVDRSGDVFRHA-NAAGTSPHGGVLALAGDDHAAKS-- 159 (1165)
T ss_pred eEEeeccCHHHHHHHHhhhcccccccceeeccceEEEecCcCCccccHhHHHHH-HhhcCCCCCcEEEEEecCCCCcc--
Confidence 6788899999999999554 55566655554333357889987643 33322 2 444444444211
Q ss_pred CCCCCChhhHHHHhcCCCCEEEecCCHHHHHHHHHHHHhC---CCCcEEEEecCCC
Q 006251 574 GPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVI---DDRPSCFRFPRGN 626 (654)
Q Consensus 574 G~tHq~~edla~~r~iPnl~V~~PsD~~E~~~ll~~al~~---~~~P~~ir~~r~~ 626 (654)
-.+-|+++ ++...-+|-|+.|+|+.|+..+...+++- .+-||.+|.....
T Consensus 160 Sq~eqdSr---~~~~~a~iPvl~Ps~~qE~~d~~~~g~~lSr~~g~pV~lr~~t~v 212 (1165)
T PRK09193 160 STLPHQSE---HAFKAAGMPVLFPANVQEILDYGLHGWAMSRYSGLWVGMKTVTDV 212 (1165)
T ss_pred ccchhhhH---HHHHHcCCceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE
Confidence 11122223 33445567799999999999988877653 4569999876543
No 296
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=47.82 E-value=44 Score=35.84 Aligned_cols=102 Identities=19% Similarity=0.219 Sum_probs=55.3
Q ss_pred HHHHHHHHh----cCCeeEEee-h--HHHHHhHHHHHHHhhhcCCCCEEEEEecCCc--c--CCCCCCCCChhhHHHHhc
Q 006251 520 VTFAAGLAS----EGVKPFCAI-Y--SSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--V--GADGPTHCGAFDVTFMSC 588 (654)
Q Consensus 520 vg~AaGlA~----~G~~Pi~~t-f--a~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~--~--g~dG~tHq~~edla~~r~ 588 (654)
+.+|+|.|+ .|...++-. | ..--+-.+-.-+|.++..++||+|++-.-++ . .+....-..+.|.+-.-.
T Consensus 107 ~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvveNN~~aist~~~~~~~~~~~~~~a~~~g 186 (300)
T PF00676_consen 107 VPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVENNQYAISTPTEEQTASPDIADRAKGYG 186 (300)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEEEESEETTEEHHHHCSSSTSGGGGGGTT
T ss_pred CccccchhHhhhhcCCceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEecCCcccccCccccccccchhhhhhccC
Confidence 455556665 354444333 3 3322333333468899999999999865543 1 111112222445555556
Q ss_pred CCCCEEEecCCHHHHHHHHHHHHh---CCCCcEEEEe
Q 006251 589 LPNMVVMAPSDEAELMHMVATAAV---IDDRPSCFRF 622 (654)
Q Consensus 589 iPnl~V~~PsD~~E~~~ll~~al~---~~~~P~~ir~ 622 (654)
||++.| -=.|+.++..+++.|++ ..++|++|-.
T Consensus 187 ip~~~V-DG~D~~av~~a~~~A~~~~R~g~gP~lie~ 222 (300)
T PF00676_consen 187 IPGIRV-DGNDVEAVYEAAKEAVEYARAGKGPVLIEA 222 (300)
T ss_dssp SEEEEE-ETTSHHHHHHHHHHHHHHHHTTT--EEEEE
T ss_pred CcEEEE-CCEeHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 776665 44666666666555543 3578998854
No 297
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=45.47 E-value=1.3e+02 Score=32.52 Aligned_cols=65 Identities=25% Similarity=0.371 Sum_probs=43.6
Q ss_pred CCCCCCCCCccccCcccchhh-HHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHH-hhcCCCEEEEEECCCC
Q 006251 238 GFPKREESVHDAFGAGHSSTS-ISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNA-GFLDANLIVVLNDNKQ 315 (654)
Q Consensus 238 G~p~~~es~~~~fg~G~lG~~-is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A-~~~~lnLi~Il~dN~~ 315 (654)
-||+|. |..|.+=+. ++.|.|+|++- + .-.+.+=+.+..+-+||=+.++ ++.++|+.+|+-+-+.
T Consensus 46 ~fPdR~------~NvGIaEQ~mvg~AAGLA~~G----k---~Pfv~tfa~F~s~Ra~EQir~~iay~~lnVKiv~t~~G~ 112 (312)
T COG3958 46 EFPDRF------FNVGIAEQDMVGTAAGLALAG----K---KPFVSTFAAFLSRRAWEQIRNSIAYNNLNVKIVATHAGV 112 (312)
T ss_pred hCchhh------eecchHHHHHHHHHHHHHhcC----C---CceeechHHHHHHHHHHHHHHHhhhccCCeEEEEecCCc
Confidence 367764 334433332 56777777653 2 2334455788888899998776 5778999999998875
No 298
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=41.48 E-value=2e+02 Score=34.75 Aligned_cols=49 Identities=12% Similarity=0.181 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHH-HhhcCCCEEEEEECCC
Q 006251 258 SISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNN-AGFLDANLIVVLNDNK 314 (654)
Q Consensus 258 ~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~-A~~~~lnLi~Il~dN~ 314 (654)
.++.|.|||. .| -+.|+++.. .+.+ -+|+-+.+ ++.+++|++++++.-+
T Consensus 435 aVt~AAGLA~----~G-~kPvv~iys--tFlq-RAyDQI~~Dval~~lpV~~vid~aG 484 (701)
T PLN02225 435 AVTFSAGLSS----GG-LKPFCIIPS--AFLQ-RAYDQVVHDVDRQRKAVRFVITSAG 484 (701)
T ss_pred HHHHHHHHHH----CC-CEEEEEeeh--hHHH-HHHHHHHHHHHhhcCCceEEEECCc
Confidence 3566677765 33 366777774 5554 66776544 6788999999998755
No 299
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=40.18 E-value=1.5e+02 Score=32.03 Aligned_cols=91 Identities=14% Similarity=0.107 Sum_probs=48.2
Q ss_pred CeeEEee-hHHHHHhHHHHHHHhhhcCCCCEEEEEecCCccCCCCCC----CC-ChhhHHHHhcCCCCEEEecCCHHHHH
Q 006251 531 VKPFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPT----HC-GAFDVTFMSCLPNMVVMAPSDEAELM 604 (654)
Q Consensus 531 ~~Pi~~t-fa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~~g~dG~t----Hq-~~edla~~r~iPnl~V~~PsD~~E~~ 604 (654)
..+++.+ -..|.+-.+-+-++.++..++||+++....++ |...++ .. ...+++-.-.+|++.| .=.|+.++.
T Consensus 133 ~~vv~~~GDGa~~~g~~~ealn~A~~~~lPvi~vv~NN~y-g~s~~~~~~~~~~~~a~~A~a~G~~~~~V-dg~d~~av~ 210 (315)
T TIGR03182 133 NVTACFFGDGAANQGQFYESFNMAALWKLPVIFVIENNLY-AMGTSVERSSSVTDLYKRGESFGIPGERV-DGMDVLAVR 210 (315)
T ss_pred CEEEEEeCCCcccccHHHHHHHHhhccCcCEEEEEEcCCc-cccCCHHHHhCCcCHHHHHHhCCCCEEEE-CCCCHHHHH
Confidence 3444433 45565333222356778899999999866553 211111 11 1334443445666554 333565555
Q ss_pred HHHHHHHh---CCCCcEEEEec
Q 006251 605 HMVATAAV---IDDRPSCFRFP 623 (654)
Q Consensus 605 ~ll~~al~---~~~~P~~ir~~ 623 (654)
..++.|++ ..++|++|-..
T Consensus 211 ~a~~~A~~~ar~~~gP~lIe~~ 232 (315)
T TIGR03182 211 EAAKEAVERARSGKGPILLEMK 232 (315)
T ss_pred HHHHHHHHHHHccCCCEEEEEe
Confidence 55555442 45789998653
No 300
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=38.83 E-value=3.2e+02 Score=26.39 Aligned_cols=49 Identities=18% Similarity=0.148 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCC
Q 006251 260 SAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNK 314 (654)
Q Consensus 260 s~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~ 314 (654)
-+|.|.|-+ .++...+++..|=|.++ ..-++..|.....||++|.-+..
T Consensus 52 ~mA~gyar~---tg~~~v~~~t~GpG~~n---~~~~l~~A~~~~~Pvl~I~g~~~ 100 (164)
T cd07039 52 FAASAEAKL---TGKLGVCLGSSGPGAIH---LLNGLYDAKRDRAPVLAIAGQVP 100 (164)
T ss_pred HHHHHHHHH---hCCCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEecCCc
Confidence 455565543 24445555555777776 44567777777899999985543
No 301
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=37.07 E-value=1.7e+02 Score=32.00 Aligned_cols=94 Identities=15% Similarity=0.210 Sum_probs=54.6
Q ss_pred eeEEee-hHHHH-HhHHHHHHHhhhcCCCC-EEEEEecCCccCCCCCCCCC-hhhHH-HHhcCCCCEEEec---CCHHHH
Q 006251 532 KPFCAI-YSSFL-QRGYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHCG-AFDVT-FMSCLPNMVVMAP---SDEAEL 603 (654)
Q Consensus 532 ~Pi~~t-fa~Fl-~ra~dQI~~~~a~~~lp-V~~v~~~~G~~g~dG~tHq~-~edla-~~r~iPnl~V~~P---sD~~E~ 603 (654)
+.+|-+ -.... -.+++.+ ..++..+++ ++++.+.-++ ..||.+--. .+|+. -+++. |+.|+.- -|..++
T Consensus 145 ~vy~l~GDGel~EG~~~EA~-~~A~~~~L~nLi~i~D~N~~-q~dg~~~~~~~~~~~~k~~a~-Gw~v~~v~dGhd~~~i 221 (332)
T PF00456_consen 145 RVYVLMGDGELQEGSVWEAA-SLAGHYKLDNLIVIYDSNGI-QIDGPTDIVFSEDIAKKFEAF-GWNVIEVCDGHDVEAI 221 (332)
T ss_dssp -EEEEEEHHHHHSHHHHHHH-HHHHHTT-TTEEEEEEEESE-ETTEEGGGTHHSHHHHHHHHT-T-EEEEEEETTBHHHH
T ss_pred eEEEEecCccccchhhHHHH-HHHHHhCCCCEEEEEecCCc-ccCCCcccccchHHHHHHHHh-hhhhcccccCcHHHHH
Confidence 455554 44443 2445553 556677775 6777777664 346766432 34443 25555 8999887 566677
Q ss_pred HHHHHHHHhCCCCcEEEEecCCCCC
Q 006251 604 MHMVATAAVIDDRPSCFRFPRGNGI 628 (654)
Q Consensus 604 ~~ll~~al~~~~~P~~ir~~r~~~~ 628 (654)
..+++.+-...++|++|....-.+.
T Consensus 222 ~~A~~~a~~~~~kP~~Ii~~TvkG~ 246 (332)
T PF00456_consen 222 YAAIEEAKASKGKPTVIIARTVKGK 246 (332)
T ss_dssp HHHHHHHHHSTSS-EEEEEEE-TTT
T ss_pred HHHHHHHHhcCCCCceeecceEEec
Confidence 7777777555589999987755443
No 302
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=36.72 E-value=1.8e+02 Score=33.32 Aligned_cols=34 Identities=21% Similarity=0.488 Sum_probs=23.3
Q ss_pred hhhc-CCeEEeecCCCCHHHHHHHHHHhHhCCCCCCEEEE
Q 006251 387 FEEL-GLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIH 425 (654)
Q Consensus 387 fea~-G~~~ig~vDGhDi~~L~~al~~ak~~~~~gP~lI~ 425 (654)
+..+ |+.++.|. |..+....|+.+.+. ++|++|.
T Consensus 275 ~~~iPgl~V~~P~---d~~d~~~ll~~ai~~--~~Pv~il 309 (464)
T PRK11892 275 YSHIPGLKVVAPY---SAADAKGLLKAAIRD--PNPVIFL 309 (464)
T ss_pred HhhCCCCEEEEeC---CHHHHHHHHHHHhhC--CCcEEEE
Confidence 4444 78888774 566667777776653 6899874
No 303
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=35.58 E-value=3.4e+02 Score=32.42 Aligned_cols=49 Identities=16% Similarity=0.098 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCC
Q 006251 259 ISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNK 314 (654)
Q Consensus 259 is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~ 314 (654)
+++|.|||+. +.-..+++.+ ..+.. ..++++..++..++|+++|.-..+
T Consensus 409 v~~AaGlA~~----gG~~p~~~tf--~~F~~-r~~~~ir~~a~~~lpV~~v~th~g 457 (653)
T TIGR00232 409 GAIMNGIALH----GGFKPYGGTF--LMFVD-YARPAIRLAALMKLPVIYVYTHDS 457 (653)
T ss_pred HHHHHHHHHc----CCCeEEEEEh--HHHHH-HHHHHHHHHHhcCCCEEEEEeCCc
Confidence 5667777762 2122333322 24444 678899999999999999997665
No 304
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=35.12 E-value=63 Score=41.02 Aligned_cols=114 Identities=14% Similarity=0.035 Sum_probs=66.8
Q ss_pred CccccchhHHHHHHHHHHHH---------hcCCeeEEeehHHHHHhHHHHHHHhh-hcCCCC---EEEEEecCCccCCCC
Q 006251 508 RCFDVGIAEQHAVTFAAGLA---------SEGVKPFCAIYSSFLQRGYDQVVHDV-DLQKLP---VRFAMDRAGLVGADG 574 (654)
Q Consensus 508 R~id~GIaE~~mvg~AaGlA---------~~G~~Pi~~tfa~Fl~ra~dQI~~~~-a~~~lp---V~~v~~~~G~~g~dG 574 (654)
=+|+-|+.|--..++..|-. ..|.+.+++.=.+=+.|+-|-+++.. ++.... |+++++.-|... -
T Consensus 86 i~fe~~~NEklAatav~Gsq~~e~~~~a~~dGv~~lwygK~pGvn~aaD~l~h~n~~gt~~~GGvv~v~gDDpg~~S--S 163 (1186)
T PRK13029 86 VVFQPGVNEELAATAVWGSQQLELDPGAKRDGVFGMWYGKGPGVDRSGDALRHANLAGTSPLGGVLVLAGDDHGAKS--S 163 (1186)
T ss_pred eEEeecCCHHHHHHHhhhhhhcccccceeeccceEEEecCcCCcccchhHHHHhhccccCCCCcEEEEEecCCCCcc--c
Confidence 56667788887755544444 44555555543333578889876532 233222 344444444211 1
Q ss_pred CCCCChhhHHHHhcCCCCEEEecCCHHHHHHHHHHHHhC---CCCcEEEEecCCC
Q 006251 575 PTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVI---DDRPSCFRFPRGN 626 (654)
Q Consensus 575 ~tHq~~edla~~r~iPnl~V~~PsD~~E~~~ll~~al~~---~~~P~~ir~~r~~ 626 (654)
.+-|+++ ++...-+|-|+.|+|..|+..+...+++- .+-||.++.....
T Consensus 164 q~eqdSr---~~~~~a~iPvl~Ps~~qE~~d~~~~a~~lSr~~g~~V~lr~~t~v 215 (1186)
T PRK13029 164 SVAHQSD---HTFIAWGIPVLYPASVQDYLDYGLHGWAMSRYSGLWVGMKCVTEV 215 (1186)
T ss_pred cCHHHHH---HHHHHcCCceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEeeee
Confidence 1222223 33444567799999999999988877653 4569999877654
No 305
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=34.58 E-value=1.6e+02 Score=32.48 Aligned_cols=72 Identities=14% Similarity=0.125 Sum_probs=40.0
Q ss_pred HHhhhcCCCCEEEEEecCCccCCCCCC--CCChhhHH-HHhcCCCCEEEecCCHHHHHHHHHHHHh--CCCCcEEEEec
Q 006251 550 VHDVDLQKLPVRFAMDRAGLVGADGPT--HCGAFDVT-FMSCLPNMVVMAPSDEAELMHMVATAAV--IDDRPSCFRFP 623 (654)
Q Consensus 550 ~~~~a~~~lpV~~v~~~~G~~g~dG~t--Hq~~edla-~~r~iPnl~V~~PsD~~E~~~ll~~al~--~~~~P~~ir~~ 623 (654)
+|.++..++||++++...++. -.-++ .+...+++ ....+|++.| -=-|..++..+++.+++ +.++|++|-..
T Consensus 181 ln~A~~~~lPvvfvveNN~~a-ist~~~~~~~~~~~~~~~~~~p~~~V-DG~D~~av~~a~~~A~~~aR~~gP~lIe~~ 257 (362)
T PLN02269 181 LNIAALWDLPVIFVCENNHYG-MGTAEWRAAKSPAYYKRGDYVPGLKV-DGMDVLAVKQACKFAKEHALSNGPIVLEMD 257 (362)
T ss_pred HHHhhccCcCEEEEEeCCCEe-ccCchhhhccchHHHHhhcCCCeEEE-CCCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 578889999999999776642 11111 11222221 1234677665 33344444555555442 13789999653
No 306
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=34.50 E-value=3.1e+02 Score=30.39 Aligned_cols=49 Identities=14% Similarity=0.212 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCC
Q 006251 258 SISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNK 314 (654)
Q Consensus 258 ~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~ 314 (654)
++++|+|.|+| ..++++...=+++. ..+|.+..|+-..+|+++++-+..
T Consensus 60 A~~~a~GAs~a------G~Ra~TaTSg~Gl~--lm~E~~~~a~~~e~P~Viv~~~R~ 108 (376)
T PRK08659 60 SMAAVIGASWA------GAKAMTATSGPGFS--LMQENIGYAAMTETPCVIVNVQRG 108 (376)
T ss_pred HHHHHHhHHhh------CCCeEeecCCCcHH--HHHHHHHHHHHcCCCEEEEEeecC
Confidence 46778888776 56678777777777 778999999888899888776654
No 307
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.39 E-value=66 Score=30.21 Aligned_cols=36 Identities=39% Similarity=0.548 Sum_probs=22.3
Q ss_pred hhhcCCe--EEeecCC-----CCHHHHHHHHHHhHhCCCCCCEEEEEEe
Q 006251 387 FEELGLY--YIGPVDG-----HNVEDLVTIFQRVKEMPAPGPVLIHVVT 428 (654)
Q Consensus 387 fea~G~~--~ig~vDG-----hDi~~L~~al~~ak~~~~~gP~lI~v~T 428 (654)
++..|+. ++ ||-| +|+++..+++.+ ..+|++-+|+|
T Consensus 54 a~~aGl~y~~i-PV~~~~iT~~dV~~f~~Al~e-----aegPVlayCrs 96 (130)
T COG3453 54 AEAAGLTYTHI-PVTGGGITEADVEAFQRALDE-----AEGPVLAYCRS 96 (130)
T ss_pred HHhcCCceEEe-ecCCCCCCHHHHHHHHHHHHH-----hCCCEEeeecC
Confidence 5556654 45 6655 344445555444 37999999987
No 308
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=34.33 E-value=4.3e+02 Score=25.38 Aligned_cols=49 Identities=20% Similarity=0.219 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHHcCCCCeEEEEE--cCCCcccchHHHHHHHHhhcCCCEEEEEECCC
Q 006251 258 SISAGLGMAVARDILGKNNNVISVI--GDGAMTAGQAYEAMNNAGFLDANLIVVLNDNK 314 (654)
Q Consensus 258 ~is~AlGmAlA~kl~g~~~~Vvavi--GDGal~eG~~~EAln~A~~~~lnLi~Il~dN~ 314 (654)
+..+|.|.+.+. ++..+|+. |=|.++ ..-+|..|...+.|+++|.-+-.
T Consensus 51 A~~~A~g~ar~~-----g~~~v~~~~~GpG~~n---~~~~l~~A~~~~~Pvl~i~g~~~ 101 (172)
T PF02776_consen 51 AAFMADGYARAT-----GRPGVVIVTSGPGATN---ALTGLANAYADRIPVLVITGQRP 101 (172)
T ss_dssp HHHHHHHHHHHH-----SSEEEEEEETTHHHHT---THHHHHHHHHTT-EEEEEEEESS
T ss_pred hHHHHHHHHHhh-----ccceEEEeecccchHH---HHHHHhhcccceeeEEEEecccc
Confidence 345666666543 33444443 444444 44556666666899999997765
No 309
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=33.42 E-value=5e+02 Score=29.13 Aligned_cols=63 Identities=13% Similarity=0.064 Sum_probs=36.6
Q ss_pred eeEEee-hHHHH-HhHHHHHHHhhhcCCC-CEEEEEecCCccCCCCCCCC---ChhhHHH-HhcCCCCEEEec
Q 006251 532 KPFCAI-YSSFL-QRGYDQVVHDVDLQKL-PVRFAMDRAGLVGADGPTHC---GAFDVTF-MSCLPNMVVMAP 597 (654)
Q Consensus 532 ~Pi~~t-fa~Fl-~ra~dQI~~~~a~~~l-pV~~v~~~~G~~g~dG~tHq---~~edla~-~r~iPnl~V~~P 597 (654)
+.+|-+ -.... -.+++.+ +.++..++ +++++.+..++. -||+|-. ..++++- +++. |+.|+.-
T Consensus 149 rvyvllGDGEl~EG~vwEA~-~~Ag~~kL~NLivIvD~N~~q-idG~t~~v~~~~e~l~~kf~Af-GW~vi~V 218 (386)
T cd02017 149 KVWAFLGDGEMDEPESLGAI-GLAAREKLDNLIFVVNCNLQR-LDGPVRGNGKIIQELEGIFRGA-GWNVIKV 218 (386)
T ss_pred eEEEEEcccccccHHHHHHH-HHHHHhCCCCEEEEEECCCCc-cCCcccccccCchhHHHHHHhc-CCEEEEE
Confidence 344444 33332 2556664 55666776 678888877753 4666654 3455543 4555 8888864
No 310
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=32.59 E-value=26 Score=35.68 Aligned_cols=27 Identities=48% Similarity=0.764 Sum_probs=21.0
Q ss_pred CCCCCCCCCCccceeeccceEEeeeeeee
Q 006251 11 PPVRGPHSPSRFSYYKNTSLVITQRRHYT 39 (654)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (654)
-|-|-||||.||+- ...||+.|+|--|
T Consensus 87 LParVpHSPqRFan--tvGlVVEr~R~~t 113 (279)
T KOG3995|consen 87 LPARVPHSPQRFAN--TVGLVVERRRLET 113 (279)
T ss_pred eccCCCCChhhhcc--ceeEEEEeccCCC
Confidence 47899999999973 3468899988643
No 311
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=32.21 E-value=1.5e+02 Score=33.57 Aligned_cols=88 Identities=14% Similarity=0.165 Sum_probs=43.4
Q ss_pred eeEEeeh--HHHHHh-HHHHHHHhhhcCCCCEEEEEecCCc-cCCCCCCCCChhhHH---HHhcCCCCEEEecCCHHHHH
Q 006251 532 KPFCAIY--SSFLQR-GYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVT---FMSCLPNMVVMAPSDEAELM 604 (654)
Q Consensus 532 ~Pi~~tf--a~Fl~r-a~dQI~~~~a~~~lpV~~v~~~~G~-~g~dG~tHq~~edla---~~r~iPnl~V~~PsD~~E~~ 604 (654)
.+++.++ ..|..- .++. ++.++..++||++++-..+. .|.-=..+....|++ -.-.+|++.| -=.|..++.
T Consensus 224 ~vvv~~~GDGa~~eG~f~Ea-Ln~A~~~~LPvIfVV~NN~yaig~~~~~~t~~~dia~~A~a~G~~~~~V-DG~D~~av~ 301 (433)
T PLN02374 224 DVTLAFFGDGTCNNGQFFEC-LNMAALWKLPIVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHV-DGMDVLKVR 301 (433)
T ss_pred CEEEEEECCCccccChHHHH-HHHHHHhCCCEEEEEeCCCEeecceeeeccCCCCHHHHHHhcCCcEEEE-CCCCHHHHH
Confidence 3444444 344322 2333 57788899999999866542 121000011122332 2234555544 223333333
Q ss_pred ----HHHHHHHhCCCCcEEEEe
Q 006251 605 ----HMVATAAVIDDRPSCFRF 622 (654)
Q Consensus 605 ----~ll~~al~~~~~P~~ir~ 622 (654)
.+++.+. ..++|++|-.
T Consensus 302 ~a~~~A~~~Ar-~g~gP~LIe~ 322 (433)
T PLN02374 302 EVAKEAIERAR-RGEGPTLVEC 322 (433)
T ss_pred HHHHHHHHHHH-HcCCCEEEEE
Confidence 4555553 3578998854
No 312
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=31.00 E-value=4.5e+02 Score=29.42 Aligned_cols=49 Identities=14% Similarity=0.184 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCC
Q 006251 258 SISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQ 315 (654)
Q Consensus 258 ~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~ 315 (654)
++++|+|.++| ..++++...=++++ ..+|.+..|+...+|+++++- |+.
T Consensus 61 A~~~aiGAs~a------GaRa~TaTSg~Gl~--lm~E~l~~aa~~~lPiVi~~~-~R~ 109 (390)
T PRK08366 61 AMAACIGASAA------GARAFTATSAQGLA--LMHEMLHWAAGARLPIVMVDV-NRA 109 (390)
T ss_pred HHHHHHHHHhh------CCCeEeeeCcccHH--HHhhHHHHHHhcCCCEEEEEe-ccC
Confidence 47788888886 56788888888888 788999999999999665554 553
No 313
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=29.93 E-value=79 Score=34.71 Aligned_cols=47 Identities=13% Similarity=0.116 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEEC
Q 006251 258 SISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLND 312 (654)
Q Consensus 258 ~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~d 312 (654)
++++|+|.++| ..++++...|+++. ..+|.+..|+-...|+++++-+
T Consensus 60 A~~~a~GAs~a------G~Ra~taTSg~Gl~--lm~E~l~~a~~~e~P~v~v~v~ 106 (352)
T PRK07119 60 AINMVYGAAAT------GKRVMTSSSSPGIS--LKQEGISYLAGAELPCVIVNIM 106 (352)
T ss_pred HHHHHHHHHhh------CCCEEeecCcchHH--HHHHHHHHHHHccCCEEEEEec
Confidence 47788888876 66789999999998 8999999999999998876654
No 314
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=28.76 E-value=3e+02 Score=25.27 Aligned_cols=38 Identities=18% Similarity=0.138 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECC
Q 006251 275 NNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDN 313 (654)
Q Consensus 275 ~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN 313 (654)
.++.+.++.||.-+ +...+.++.+...+.++.+|....
T Consensus 99 ~~~~iv~iTDG~~~-~~~~~~~~~~~~~~i~i~~v~~~~ 136 (172)
T PF13519_consen 99 RRRAIVLITDGEDN-SSDIEAAKALKQQGITIYTVGIGS 136 (172)
T ss_dssp EEEEEEEEES-TTH-CHHHHHHHHHHCTTEEEEEEEES-
T ss_pred CceEEEEecCCCCC-cchhHHHHHHHHcCCeEEEEEECC
Confidence 57899999999877 455566666654455555554443
No 315
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=25.93 E-value=2.9e+02 Score=32.34 Aligned_cols=49 Identities=18% Similarity=0.299 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCC
Q 006251 258 SISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNK 314 (654)
Q Consensus 258 ~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~ 314 (654)
++++++|.++| ..++++..-=.+++ ...|.+..|+-..+|+++++-+-.
T Consensus 249 A~~~a~GAs~a------G~Ra~taTSg~Gl~--lm~E~l~~a~~~~~P~Vi~~~~R~ 297 (562)
T TIGR03710 249 AINMAIGASYA------GARAMTATSGPGFA--LMTEALGLAGMTETPLVIVDVQRG 297 (562)
T ss_pred HHHHHHhHHhc------CCceeecCCCCChh--HhHHHHhHHHhccCCEEEEEcccC
Confidence 36777777776 55677777777777 788999999988899777665554
No 316
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=25.23 E-value=2.1e+02 Score=31.42 Aligned_cols=102 Identities=17% Similarity=0.227 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHhc--CCeeEEee-hHHHH---HhHHHHHHHhhhcCCCCEEEEEecCCccCCCCCCCC-ChhhHH-HHh
Q 006251 516 EQHAVTFAAGLASE--GVKPFCAI-YSSFL---QRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHC-GAFDVT-FMS 587 (654)
Q Consensus 516 E~~mvg~AaGlA~~--G~~Pi~~t-fa~Fl---~ra~dQI~~~~a~~~lpV~~v~~~~G~~g~dG~tHq-~~edla-~~r 587 (654)
+|-=+|..+++|+. +-.-++.+ |.+=. -..|+. .|.+++.++||+|++-..++ | -|.+|. ..-+.. +.|
T Consensus 169 AQiPLGaGia~A~kY~~~~~v~~alYGDGAaNQGQ~fEa-~NMA~LW~LP~IFvCENN~y-G-MGTs~~Rasa~teyykR 245 (394)
T KOG0225|consen 169 AQIPLGAGIAFAQKYNREDAVCFALYGDGAANQGQVFEA-FNMAALWKLPVIFVCENNHY-G-MGTSAERASASTEYYKR 245 (394)
T ss_pred cCCCccccHHHHHHhccCCceEEEEeccccccchhHHHH-hhHHHHhCCCEEEEEccCCC-c-cCcchhhhhcChHHHhc
Confidence 33344555555653 43344444 64432 244555 58899999999999965543 2 233333 122222 333
Q ss_pred --cCCCCEE-----EecCCHHHHHHHHHHHHhCCCCcEEEEec
Q 006251 588 --CLPNMVV-----MAPSDEAELMHMVATAAVIDDRPSCFRFP 623 (654)
Q Consensus 588 --~iPnl~V-----~~PsD~~E~~~ll~~al~~~~~P~~ir~~ 623 (654)
-|||++| ++- -.-++.+.++|+ ..++|.++-+.
T Consensus 246 G~yiPGl~VdGmdvlaV--r~a~KfA~~~~~-~g~GPilmE~~ 285 (394)
T KOG0225|consen 246 GDYIPGLKVDGMDVLAV--REATKFAKKYAL-EGKGPILMEMD 285 (394)
T ss_pred cCCCCceEECCcchhhH--HHHHHHHHHHHh-cCCCCEEEEEe
Confidence 4898876 211 122334455564 45899887543
No 317
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.71 E-value=15 Score=34.59 Aligned_cols=21 Identities=38% Similarity=0.506 Sum_probs=18.6
Q ss_pred hcccccccccccccccccccc
Q 006251 59 LTTEYWIAPTMALSSGIAIGA 79 (654)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~ 79 (654)
.|++-|++|.++|..||+||+
T Consensus 3 wt~~~W~~a~igLvvGi~IG~ 23 (138)
T COG3105 3 WTFMTWEYALIGLVVGIIIGA 23 (138)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 367789999999999999996
No 318
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=21.22 E-value=5.7e+02 Score=24.51 Aligned_cols=51 Identities=14% Similarity=0.174 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCC
Q 006251 257 TSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNK 314 (654)
Q Consensus 257 ~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~ 314 (654)
.+.-+|.|.+.+. +...+++.-|=|..+ ..-++..|.....||++|.-+..
T Consensus 46 ~A~~mA~gyar~t----~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~ 96 (162)
T cd07038 46 NAGYAADGYARVK----GLGALVTTYGVGELS---ALNGIAGAYAEHVPVVHIVGAPS 96 (162)
T ss_pred HHHHHHHHHHHhh----CCEEEEEcCCccHHH---HHHHHHHHHHcCCCEEEEecCCC
Confidence 3445566665542 222333333666555 44567777777899999996654
No 319
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=20.67 E-value=2.6e+02 Score=28.80 Aligned_cols=47 Identities=13% Similarity=0.229 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECC
Q 006251 259 ISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDN 313 (654)
Q Consensus 259 is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN 313 (654)
+.+++|.+++ ..++++...=.+++ ...|.|..|+...+|+++++-+-
T Consensus 49 ~~~~~GAs~a------G~ra~t~ts~~Gl~--lm~e~l~~a~~~~~P~V~~~~~R 95 (230)
T PF01855_consen 49 MEAAIGASAA------GARAMTATSGPGLN--LMAEPLYWAAGTELPIVIVVVQR 95 (230)
T ss_dssp HHHHHHHHHT------T--EEEEEECCHHH--HHCCCHHHHHHTT--EEEEEEEB
T ss_pred HHHHHHHHhc------CCceEEeecCCccc--ccHhHHHHHHHcCCCEEEEEEEC
Confidence 6677777775 55677777777777 77899999999999977766543
No 320
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=20.65 E-value=1.9e+02 Score=28.93 Aligned_cols=36 Identities=3% Similarity=0.054 Sum_probs=24.8
Q ss_pred CeEEEEEcCC-CcccchHHHHHHHHhhcCCCEEEEEE
Q 006251 276 NNVISVIGDG-AMTAGQAYEAMNNAGFLDANLIVVLN 311 (654)
Q Consensus 276 ~~VvaviGDG-al~eG~~~EAln~A~~~~lnLi~Il~ 311 (654)
.++++|+|++ +..+|..+++...+...+-.+-+|..
T Consensus 108 ~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~ 144 (187)
T cd01452 108 QRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINF 144 (187)
T ss_pred ceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEe
Confidence 3777777777 88888877777766665555555543
No 321
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=20.59 E-value=3.6e+02 Score=27.73 Aligned_cols=46 Identities=17% Similarity=0.289 Sum_probs=29.4
Q ss_pred hhhhcCCeEEeecCCCCHHHHHHHHHHhHhCCC--CCCEEEEEEeecCCCC
Q 006251 386 FFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPA--PGPVLIHVVTEKGKGY 434 (654)
Q Consensus 386 lfea~G~~~ig~vDGhDi~~L~~al~~ak~~~~--~gP~lI~v~T~KG~G~ 434 (654)
+|+.+||.+. ...--+.+++.+++++..+... ..-+++.+ .-++|.
T Consensus 38 ~f~~lgF~V~-~~~dlt~~em~~~l~~~~~~~~~~~~d~~v~~--~~sHG~ 85 (241)
T smart00115 38 LFQSLGYEVH-VKNNLTAEEMLEELKEFAERPEHSDSDSFVCV--LLSHGE 85 (241)
T ss_pred HHHHCCCEEE-EecCCCHHHHHHHHHHHHhccccCCCCEEEEE--EcCCCC
Confidence 4999999987 4444678889999887654211 22344433 456663
No 322
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=20.09 E-value=6e+02 Score=28.40 Aligned_cols=47 Identities=26% Similarity=0.328 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEEC
Q 006251 260 SAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLND 312 (654)
Q Consensus 260 s~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~d 312 (654)
-+|.|.|- ..|+...+++..|=|.++ ..-++..|-.-..||++|.=+
T Consensus 52 ~mAdgyar---~tg~~gv~~~t~GpG~~N---~l~gl~~A~~~~~Pvl~i~g~ 98 (432)
T TIGR00173 52 FFALGLAK---ASGRPVAVVCTSGTAVAN---LLPAVIEASYSGVPLIVLTAD 98 (432)
T ss_pred HHHHHHHh---ccCCCEEEEECCcchHhh---hhHHHHHhcccCCcEEEEeCC
Confidence 35555553 335555666666888776 345666666667999999743
Done!