Query 006251
Match_columns 654
No_of_seqs 376 out of 2298
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 20:01:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006251.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006251hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2o1x_A 1-deoxy-D-xylulose-5-ph 100.0 9.7E-94 3.3E-98 822.0 42.2 498 137-651 7-504 (629)
2 2o1s_A 1-deoxy-D-xylulose-5-ph 100.0 5.6E-93 1.9E-97 814.7 41.0 499 136-651 4-502 (621)
3 3l84_A Transketolase; TKT, str 100.0 7E-82 2.4E-86 721.0 34.0 431 155-651 1-522 (632)
4 3rim_A Transketolase, TK; TPP, 100.0 1.8E-81 6.2E-86 723.0 32.7 433 157-651 19-575 (700)
5 3m49_A Transketolase; alpha-be 100.0 1.1E-81 3.9E-86 724.9 30.2 443 151-651 20-571 (690)
6 3mos_A Transketolase, TK; thia 100.0 7.7E-80 2.6E-84 704.3 39.0 435 151-651 4-495 (616)
7 3kom_A Transketolase; rossmann 100.0 3.1E-80 1.1E-84 711.2 35.0 415 157-628 3-525 (663)
8 1itz_A Transketolase; calvin c 100.0 3.8E-79 1.3E-83 705.3 39.5 441 149-651 5-556 (675)
9 3uk1_A Transketolase; structur 100.0 1.4E-79 4.9E-84 708.9 29.3 429 160-650 45-589 (711)
10 1gpu_A Transketolase; transfer 100.0 1.4E-77 4.8E-82 692.7 36.2 428 159-651 6-551 (680)
11 2r8o_A Transketolase 1, TK 1; 100.0 9.6E-77 3.3E-81 684.9 35.4 429 160-651 4-545 (669)
12 2e6k_A Transketolase; structur 100.0 1.4E-76 4.9E-81 681.6 35.4 427 161-651 9-538 (651)
13 1r9j_A Transketolase; domains, 100.0 4.7E-76 1.6E-80 679.1 35.9 430 159-651 5-543 (673)
14 2qtc_A Pyruvate dehydrogenase 100.0 5.3E-75 1.8E-79 682.9 39.4 502 139-651 56-718 (886)
15 3ahc_A Phosphoketolase, xylulo 100.0 1.2E-54 4.3E-59 502.8 36.5 429 157-649 45-649 (845)
16 2jgd_A 2-oxoglutarate dehydrog 100.0 9.8E-49 3.4E-53 461.9 33.4 438 153-650 193-810 (933)
17 2yic_A 2-oxoglutarate decarbox 100.0 1E-44 3.5E-49 425.5 25.6 340 252-648 244-740 (868)
18 2xt6_A 2-oxoglutarate decarbox 100.0 4.4E-44 1.5E-48 429.3 25.2 341 251-648 488-985 (1113)
19 1ik6_A Pyruvate dehydrogenase; 100.0 8.3E-40 2.8E-44 352.9 15.3 219 427-651 10-248 (369)
20 2ozl_B PDHE1-B, pyruvate dehyd 100.0 1.6E-33 5.3E-38 301.0 16.7 186 463-651 13-215 (341)
21 2bfd_B 2-oxoisovalerate dehydr 100.0 9.5E-34 3.3E-38 302.8 14.3 197 450-651 6-218 (342)
22 1w85_B Pyruvate dehydrogenase 100.0 6.5E-33 2.2E-37 294.2 19.4 182 465-651 3-200 (324)
23 1umd_B E1-beta, 2-OXO acid deh 100.0 1E-32 3.4E-37 292.6 17.9 183 464-651 3-201 (324)
24 1qs0_B 2-oxoisovalerate dehydr 100.0 7.7E-33 2.6E-37 295.1 15.7 183 464-651 4-218 (338)
25 1umd_A E1-alpha, 2-OXO acid de 100.0 3.9E-29 1.3E-33 269.5 26.2 230 152-438 30-277 (367)
26 1w85_A Pyruvate dehydrogenase 99.9 1.3E-24 4.5E-29 234.2 24.4 224 151-437 37-275 (368)
27 2ozl_A PDHE1-A type I, pyruvat 99.9 8.6E-25 3E-29 235.2 21.7 229 148-437 24-270 (365)
28 2bfd_A 2-oxoisovalerate dehydr 99.9 5.2E-24 1.8E-28 231.9 25.2 228 152-438 49-295 (400)
29 1qs0_A 2-oxoisovalerate dehydr 99.9 4.7E-23 1.6E-27 224.6 25.0 229 153-438 69-315 (407)
30 4feg_A Pyruvate oxidase; carba 99.5 1.8E-14 6.1E-19 164.4 13.4 193 185-451 370-566 (603)
31 2uz1_A Benzaldehyde lyase; thi 99.4 9.9E-13 3.4E-17 148.7 15.3 177 185-431 369-547 (563)
32 1ozh_A ALS, acetolactate synth 99.4 7.9E-12 2.7E-16 141.5 17.0 174 186-433 371-546 (566)
33 1ybh_A Acetolactate synthase, 99.3 2.6E-12 8.9E-17 146.1 9.4 140 251-436 424-564 (590)
34 1t9b_A Acetolactate synthase, 99.3 1.2E-11 3.9E-16 143.2 12.3 132 251-437 511-644 (677)
35 2vk8_A Pyruvate decarboxylase 99.3 5.2E-12 1.8E-16 142.7 8.5 129 251-432 411-544 (563)
36 2iht_A Carboxyethylarginine sy 99.3 9E-12 3.1E-16 141.2 10.4 125 251-430 434-561 (573)
37 1q6z_A BFD, BFDC, benzoylforma 99.2 1.1E-11 3.7E-16 139.1 10.2 125 251-430 400-525 (528)
38 2pan_A Glyoxylate carboligase; 99.2 5.6E-12 1.9E-16 144.1 7.9 135 251-434 440-584 (616)
39 2pgn_A Cyclohexane-1,2-dione h 99.2 6.5E-12 2.2E-16 142.8 8.2 132 251-437 422-554 (589)
40 1v5e_A Pyruvate oxidase; oxido 99.2 1.4E-11 4.7E-16 140.2 9.7 128 251-432 411-541 (590)
41 3eya_A Pyruvate dehydrogenase 99.2 1.2E-11 4E-16 139.6 8.9 129 251-434 404-533 (549)
42 1ovm_A Indole-3-pyruvate decar 99.2 1.2E-11 4.2E-16 139.2 8.4 124 251-432 406-534 (552)
43 2nxw_A Phenyl-3-pyruvate decar 99.2 1E-11 3.6E-16 140.5 5.9 123 251-432 420-544 (565)
44 2vbi_A Pyruvate decarboxylase; 99.2 2.4E-11 8.1E-16 137.5 8.2 124 251-433 407-536 (566)
45 2vbf_A Branched-chain alpha-ke 99.2 3.3E-11 1.1E-15 136.4 8.8 124 251-432 423-553 (570)
46 2c31_A Oxalyl-COA decarboxylas 99.2 4E-11 1.4E-15 135.7 9.2 125 251-433 424-550 (568)
47 2q28_A Oxalyl-COA decarboxylas 99.1 7.6E-11 2.6E-15 133.2 10.8 125 251-433 419-547 (564)
48 2wvg_A PDC, pyruvate decarboxy 99.1 4.4E-11 1.5E-15 135.3 8.2 124 251-433 411-544 (568)
49 3hww_A 2-succinyl-5-enolpyruvy 99.1 5.1E-11 1.7E-15 134.6 7.9 125 251-431 415-540 (556)
50 2x7j_A 2-succinyl-5-enolpyruvy 99.1 5.2E-11 1.8E-15 135.8 6.4 129 251-432 453-582 (604)
51 3lq1_A 2-succinyl-5-enolpyruvy 99.0 1.8E-10 6.3E-15 130.6 7.0 128 256-437 439-567 (578)
52 1yd7_A 2-keto acid:ferredoxin 98.7 4.4E-08 1.5E-12 106.3 10.8 153 465-624 23-187 (395)
53 2c42_A Pyruvate-ferredoxin oxi 98.2 3.4E-06 1.2E-10 103.2 11.6 114 275-429 953-1069(1231)
54 2c42_A Pyruvate-ferredoxin oxi 97.3 0.0011 3.8E-08 81.2 12.9 114 507-625 54-173 (1231)
55 1v5e_A Pyruvate oxidase; oxido 88.1 1.5 5.2E-05 49.4 10.0 113 508-626 45-165 (590)
56 1ybh_A Acetolactate synthase, 86.8 4.2 0.00014 45.6 12.6 114 507-625 51-172 (590)
57 2uz1_A Benzaldehyde lyase; thi 84.6 7.2 0.00025 43.4 13.0 151 465-625 4-164 (563)
58 2pgn_A Cyclohexane-1,2-dione h 84.1 8.6 0.00029 43.1 13.4 113 508-625 45-165 (589)
59 1t9b_A Acetolactate synthase, 83.5 7 0.00024 44.9 12.5 112 508-624 122-241 (677)
60 1ozh_A ALS, acetolactate synth 83.3 4.6 0.00016 45.1 10.7 115 508-625 50-170 (566)
61 2iht_A Carboxyethylarginine sy 83.1 5.6 0.00019 44.5 11.3 116 507-626 49-172 (573)
62 2pan_A Glyoxylate carboligase; 82.0 11 0.00039 42.3 13.4 113 508-625 67-188 (616)
63 2nxw_A Phenyl-3-pyruvate decar 80.7 16 0.00056 40.6 13.9 155 464-625 20-186 (565)
64 3lq1_A 2-succinyl-5-enolpyruvy 80.1 12 0.0004 41.9 12.5 147 471-625 13-178 (578)
65 3eya_A Pyruvate dehydrogenase 79.8 17 0.00058 40.3 13.6 121 499-625 34-162 (549)
66 3hww_A 2-succinyl-5-enolpyruvy 79.5 27 0.00091 38.7 15.2 147 470-625 9-171 (556)
67 2x7j_A 2-succinyl-5-enolpyruvy 78.2 10 0.00036 42.5 11.4 116 507-626 70-199 (604)
68 1w85_A Pyruvate dehydrogenase 78.0 4.8 0.00016 42.8 8.0 101 520-623 148-264 (368)
69 2c31_A Oxalyl-COA decarboxylas 77.5 13 0.00045 41.3 11.9 152 465-625 10-171 (568)
70 1q6z_A BFD, BFDC, benzoylforma 75.7 9.5 0.00032 42.0 10.0 115 508-626 40-162 (528)
71 2q28_A Oxalyl-COA decarboxylas 75.4 27 0.00093 38.7 13.7 115 507-625 46-169 (564)
72 2bfd_A 2-oxoisovalerate dehydr 75.0 5.4 0.00019 42.9 7.5 102 521-623 169-284 (400)
73 4feg_A Pyruvate oxidase; carba 74.7 32 0.0011 38.5 14.2 123 499-626 42-172 (603)
74 1r9j_A Transketolase; domains, 74.6 12 0.00041 42.9 10.7 91 531-624 149-248 (673)
75 2wvg_A PDC, pyruvate decarboxy 74.3 31 0.0011 38.2 13.8 115 507-626 42-170 (568)
76 1gpu_A Transketolase; transfer 74.1 9.1 0.00031 44.0 9.5 91 531-624 149-248 (680)
77 3m49_A Transketolase; alpha-be 74.0 11 0.00039 43.3 10.3 115 507-625 134-272 (690)
78 2vbi_A Pyruvate decarboxylase; 73.6 28 0.00097 38.6 13.3 114 508-626 43-170 (566)
79 2vk8_A Pyruvate decarboxylase 73.2 36 0.0012 37.6 14.0 114 508-626 44-171 (563)
80 2r8o_A Transketolase 1, TK 1; 72.3 11 0.00037 43.2 9.6 91 531-624 147-245 (669)
81 3uk1_A Transketolase; structur 70.2 11 0.00038 43.6 9.1 90 531-624 188-285 (711)
82 2vbf_A Branched-chain alpha-ke 69.8 34 0.0012 37.9 12.8 114 508-625 65-190 (570)
83 3kom_A Transketolase; rossmann 68.6 20 0.0007 41.0 10.8 92 531-625 149-248 (663)
84 1umd_A E1-alpha, 2-OXO acid de 67.8 15 0.00052 38.8 8.9 109 511-623 142-266 (367)
85 1qs0_B 2-oxoisovalerate dehydr 64.6 25 0.00086 36.4 9.8 37 387-428 138-175 (338)
86 1qs0_A 2-oxoisovalerate dehydr 63.9 12 0.00041 40.3 7.2 101 521-623 188-304 (407)
87 2e6k_A Transketolase; structur 61.6 25 0.00086 40.1 9.8 90 531-624 151-248 (651)
88 3l84_A Transketolase; TKT, str 60.7 22 0.00075 40.5 9.0 100 520-624 120-240 (632)
89 1ovm_A Indole-3-pyruvate decar 59.6 91 0.0031 34.2 13.7 114 508-625 45-170 (552)
90 3rim_A Transketolase, TK; TPP, 59.1 24 0.00083 40.7 9.1 91 532-625 170-268 (700)
91 1itz_A Transketolase; calvin c 57.4 37 0.0013 38.9 10.2 92 531-625 160-260 (675)
92 2ozl_A PDHE1-A type I, pyruvat 56.8 14 0.00048 39.1 6.2 99 521-622 147-259 (365)
93 3mos_A Transketolase, TK; thia 54.7 28 0.00097 39.4 8.6 98 520-624 127-240 (616)
94 2o1s_A 1-deoxy-D-xylulose-5-ph 50.2 71 0.0024 36.0 11.0 50 258-315 373-423 (621)
95 2bfd_B 2-oxoisovalerate dehydr 49.1 66 0.0023 33.4 9.8 36 387-427 154-190 (342)
96 1umd_B E1-beta, 2-OXO acid deh 46.2 94 0.0032 31.8 10.4 46 258-311 63-118 (324)
97 2ozl_B PDHE1-B, pyruvate dehyd 40.6 1.1E+02 0.0037 31.8 9.8 48 258-314 74-131 (341)
98 1w85_B Pyruvate dehydrogenase 37.4 1E+02 0.0034 31.6 8.9 46 258-311 62-117 (324)
99 2o1x_A 1-deoxy-D-xylulose-5-ph 35.0 99 0.0034 34.9 9.0 29 596-625 260-288 (629)
100 1ik6_A Pyruvate dehydrogenase; 33.9 1.5E+02 0.0051 31.1 9.7 49 258-314 110-168 (369)
101 2qtc_A Pyruvate dehydrogenase 29.5 2.2E+02 0.0077 33.6 11.0 66 530-597 221-292 (886)
102 3kp1_E D-ornithine aminomutase 26.8 41 0.0014 30.1 3.1 45 150-197 12-57 (121)
103 2jgd_A 2-oxoglutarate dehydrog 25.5 1.6E+02 0.0056 35.0 8.9 109 510-622 318-452 (933)
No 1
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=100.00 E-value=9.7e-94 Score=821.96 Aligned_cols=498 Identities=42% Similarity=0.689 Sum_probs=418.0
Q ss_pred CCCCccccCCCCccccCCCCHHHHHHHHHHHHHHHHHHhhccCCCCCCCccHHHHHHHHHhhcCCCCcEEEecCCchHHH
Q 006251 137 KPPTPLLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYV 216 (654)
Q Consensus 137 ~~~~~~l~~i~~p~~~~~l~~~~L~~la~~lR~~il~~v~~~~GH~gsslg~vel~~aL~~v~~~p~Dr~I~s~GH~aY~ 216 (654)
.+.||||++|+.|.|+|+++.++|+++|+++|+.+++++++++||+|+++|+++++.+||++|+.|+|+||||+||++|+
T Consensus 7 ~~~~~~l~~i~~p~d~~~l~~~~l~~l~~~iR~~~~~~~~~~~Gh~~~~lg~v~l~~aL~~~~~~~~D~~v~~~GH~~y~ 86 (629)
T 2o1x_A 7 TSDTPLLDQIHGPKDLKRLSREQLPALTEELRGEIVRVCSRGGLHLASSLGAVDIITALHYVLDSPRDRILFDVGHQAYA 86 (629)
T ss_dssp CCSCTTGGGCSSHHHHTTSCGGGHHHHHHHHHHHHHHHHTTSSSCHHHHHHTHHHHHHHHHHSCTTTSEEEESSSTTCHH
T ss_pred CCCCchhhhCCChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCcCCCchhHHHHHHHHHhhcCCCCCeEEecCchHHHH
Confidence 46789999999999999999999999999999999999998999999999999999999999987999999999999999
Q ss_pred HHHHcCChHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHH
Q 006251 217 HKILTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAM 296 (654)
Q Consensus 217 ~~~l~Gr~~~l~~lrq~ggl~G~p~~~es~~~~fg~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAl 296 (654)
|++++|+.+.+.++||++|++|||++.+++++.+++|++|+++|+|+|+|+|+|+++++++|||++|||++++|++||||
T Consensus 87 ~~~l~G~~~~~~~~r~~~g~~G~p~~~~s~~~~~~~G~~G~gl~~AvG~AlA~k~~~~~~~Vv~v~GDG~~~~G~~~EaL 166 (629)
T 2o1x_A 87 HKILTGRRDQMADIKKEGGISGFTKVSESEHDAITVGHASTSLTNALGMALARDAQGKDFHVAAVIGDGSLTGGMALAAL 166 (629)
T ss_dssp HHHTTTTGGGGGGTTSTTSCCSSCCGGGCTTCCSCCSSSSCHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHH
T ss_pred HHHHhCcHhHHhCcccCCCCCCCCCCCCCCCCCcCCCcccccHhHHHHHHHHHHHhCCCCeEEEEEchhhhhccHHHHHH
Confidence 99999998889999999999999999899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCEEEEEECCCCCcccccccCCCCCchhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhh
Q 006251 297 NNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYAR 376 (654)
Q Consensus 297 n~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r 376 (654)
|+|+.+++|+++|||||++.+. .+++.++..+++++..+.|..++...+++.+..|++..+...+..++.|
T Consensus 167 ~~A~~~~~pli~IvnnN~~~i~---------~~~~~~~~~~~~l~~~~~y~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~ 237 (629)
T 2o1x_A 167 NTIGDMGRKMLIVLNDNEMSIS---------ENVGAMNKFMRGLQVQKWFQEGEGAGKKAVEAVSKPLADFMSRAKNSTR 237 (629)
T ss_dssp HHHHHHCCSEEEEEEECSBSSS---------BCCSSHHHHC---------------------------------------
T ss_pred HHHHhhCCCEEEEEECCCCCCC---------CChhHHHHHHHHHhhchhHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 9999999999999999986531 2234444555666667777777666666655555554444444445555
Q ss_pred hccCCChhhhhhhcCCeEEeecCCCCHHHHHHHHHHhHhCCCCCCEEEEEEeecCCCCChhhcCccccccccCCCCcccc
Q 006251 377 GLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVVKFDPKTGK 456 (654)
Q Consensus 377 ~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al~~ak~~~~~gP~lI~v~T~KG~G~~~ae~~~~~~Hg~~~f~~~tg~ 456 (654)
+++.+..+.+|++|||+++++|||||+++|.++++++++. ++|++||++|.||+|++++|+++.+||+..+|++.++.
T Consensus 238 ~~~~p~~~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~~~--~~P~lI~v~t~kg~G~~~~e~~~~~~H~~~~f~~~~~~ 315 (629)
T 2o1x_A 238 HFFDPASVNPFAAMGVRYVGPVDGHNVQELVWLLERLVDL--DGPTILHIVTTKGKGLSYAEADPIYWHGPAKFDPATGE 315 (629)
T ss_dssp ------CCCTTGGGTCEEEEEEESSCHHHHHHHHHHHTTS--SSEEEEEEECCTTTTCHHHHHCTTGGGSCCSBCTTTCC
T ss_pred hhcCcccchHHHhcCCeEEeeECCcCHHHHHHHHHHHHhc--CCCEEEEEEEecCCCCChhHcCCcccccCccCCcCcCc
Confidence 5444422378999999999899999999999999999874 79999999999999999999988899999999998875
Q ss_pred cccCCCCchhHHHHHHHHHHHHHhhCCcEEEEecCccCCCChhhHHHhCCCCccccchhHHHHHHHHHHHHhcCCeeEEe
Q 006251 457 QFKTKSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLASEGVKPFCA 536 (654)
Q Consensus 457 ~~~~~~~~~s~~~a~~~aL~~~~~~d~~vvvl~aDlg~s~~l~~f~~~fp~R~id~GIaE~~mvg~AaGlA~~G~~Pi~~ 536 (654)
..+. +..+|+++|+++|.+++++|++|+++++|+.+++++.+|+++||+||||+||+||+|+++|+|||++|++||++
T Consensus 316 ~~~~--~~~~~~~~~~~~l~~~~~~d~~v~~i~~d~~~~~~~~~f~~~~~~r~~~~gIaE~~~~~~a~G~A~~G~rp~~~ 393 (629)
T 2o1x_A 316 YVPS--SAYSWSAAFGEAVTEWAKTDPRTFVVTPAMREGSGLVEFSRVHPHRYLDVGIAEEVAVTTAAGMALQGMRPVVA 393 (629)
T ss_dssp BCCC--CCCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTTTCHHHHHHCGGGEEECCSCHHHHHHHHHHHHHTTCEEEEE
T ss_pred cccc--chHHHHHHHHHHHHHHhhhCcCEEEEeccccCCcChHHHHHhcCcceEeccccHHHHHHHHHHHHHcCCEEEEE
Confidence 4222 26789999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred ehHHHHHhHHHHHHHhhhcCCCCEEEEEecCCccCCCCCCCCChhhHHHHhcCCCCEEEecCCHHHHHHHHHHHHhCCCC
Q 006251 537 IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDR 616 (654)
Q Consensus 537 tfa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~~g~dG~tHq~~edla~~r~iPnl~V~~PsD~~E~~~ll~~al~~~~~ 616 (654)
+|++|++|++|||++++|++++||+++++++|++|+||+|||+.+|+++||++|||+|++|+|++|++.++++|++ .++
T Consensus 394 ~~~~F~~~a~dqi~~~~a~~~~pvv~~~~~~g~~g~dG~tH~~~~d~a~~r~iP~l~v~~P~d~~e~~~~~~~a~~-~~~ 472 (629)
T 2o1x_A 394 IYSTFLQRAYDQVLHDVAIEHLNVTFCIDRAGIVGADGATHNGVFDLSFLRSIPGVRIGLPKDAAELRGMLKYAQT-HDG 472 (629)
T ss_dssp EEHHHHGGGHHHHHHTTTTTTCCCEEEEESBBCCCTTCTTTCBCSHHHHTTTSTTCEEECCSSHHHHHHHHHHHHH-SSS
T ss_pred ecHHHHHHHHHHHHHHHhhcCCCEEEEEECCccCCCCCcccCccHHHHHHHccCCcEEEecCCHHHHHHHHHHHHh-CCC
Confidence 9999999999999999999999999999999988899999999999999999999999999999999999999986 589
Q ss_pred cEEEEecCCCCCCccCCCCCCCCCcccCceEEecc
Q 006251 617 PSCFRFPRGNGIGAVLPPNNKGTPLETSLDSWPMS 651 (654)
Q Consensus 617 P~~ir~~r~~~~~~~~p~~~~~~~~~iGKa~vi~~ 651 (654)
|++||++|++.+..++ .+.+.+++||++++++
T Consensus 473 Pv~i~~~r~~~~~~~~---~~~~~~~~G~~~~~~~ 504 (629)
T 2o1x_A 473 PFAIRYPRGNTAQVPA---GTWPDLKWGEWERLKG 504 (629)
T ss_dssp CEEEECCSSBCCCCCT---TCCCCCCTTCCEEEEC
T ss_pred CEEEEecCCCCCCCcc---cccccccCCceEEEee
Confidence 9999999987543222 1346789999998864
No 2
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=100.00 E-value=5.6e-93 Score=814.73 Aligned_cols=499 Identities=48% Similarity=0.802 Sum_probs=395.3
Q ss_pred CCCCCccccCCCCccccCCCCHHHHHHHHHHHHHHHHHHhhccCCCCCCCccHHHHHHHHHhhcCCCCcEEEecCCchHH
Q 006251 136 EKPPTPLLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAY 215 (654)
Q Consensus 136 ~~~~~~~l~~i~~p~~~~~l~~~~L~~la~~lR~~il~~v~~~~GH~gsslg~vel~~aL~~v~~~p~Dr~I~s~GH~aY 215 (654)
+.|.+|||++|+.|.|+|+|+.++|+++|+++|+.+++++++++||+|+++|+++++++||++|+.|+|+||||+||++|
T Consensus 4 ~~~~~~~l~~i~~p~d~~~l~~~~l~~l~~~iR~~~~~~~~~~~Gh~~~~lg~~~~~~~l~~~~~~~~D~~v~~~gH~~y 83 (621)
T 2o1s_A 4 DIAKYPTLALVDSTQELRLLPKESLPKLCDELRRYLLDSVSRSSGHFASGLGTVELTVALHYVYNTPFDQLIWDVGHQAY 83 (621)
T ss_dssp CTTTSTTGGGCSSHHHHTTSCGGGHHHHHHHHHHHHHHHSCGGGCTHHHHHTTHHHHHHHHHHSCTTTSEEEESSSTTCH
T ss_pred CCCCCchhhhcCChHHhhhCCHHHHHHHHHHHHHHHHHHHhhcCCCcCCChhHHHHHHHHHhccCCCCCEEEEeCchHHH
Confidence 45778999999999999999999999999999999999998899999999999999999999998799999999999999
Q ss_pred HHHHHcCChHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHH
Q 006251 216 VHKILTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEA 295 (654)
Q Consensus 216 ~~~~l~Gr~~~l~~lrq~ggl~G~p~~~es~~~~fg~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EA 295 (654)
+|++++|+.+.+.++||++|++|||++.+++++.+++|++|+++|+|+|+|+|+++++++++|||++|||++++|++|||
T Consensus 84 ~~~~l~G~~~~~~~~r~~~g~~g~~~~~~s~~~~~~~G~~G~gl~~A~G~AlA~~~~~~~~~Vv~v~GDG~~~~G~~~Ea 163 (621)
T 2o1s_A 84 PHKILTGRRDKIGTIRQKGGLHPFPWRGESEYDVLSVGHSSTSISAGIGIAVAAEKEGKNRRTVCVIGDGAITAGMAFEA 163 (621)
T ss_dssp HHHHTTTTGGGGGGTTSTTSCCSSCCTTTCTTCCSCCSSSSCHHHHHHHHHHHHHHHTSCCCEEEEEETTGGGSHHHHHH
T ss_pred HHHHHhCCHhhhhcccccCCCCCCCCCCCCCCCccCCcccchHHHHHHHHHHHHHHhCCCCeEEEEEchhhhhccHHHHH
Confidence 99999999888999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCEEEEEECCCCCcccccccCCCCCchhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHh
Q 006251 296 MNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYA 375 (654)
Q Consensus 296 ln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~ 375 (654)
||+|+.+++|+++|||||++.+. .+++.++..+.+++.++.|..++...+++.+..+ .+.++..+..++.
T Consensus 164 L~~A~~~~~pli~vvnnN~~~i~---------~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~p-~~~~~~~r~~~~~ 233 (621)
T 2o1s_A 164 MNHAGDIRPDMLVILNDNEMSIS---------ENVGALNNHLAQLLSGKLYSSLREGGKKVFSGVP-PIKELLKRTEEHI 233 (621)
T ss_dssp HHHHHHHCCSEEEEEEECC-------------------------------------------------------------
T ss_pred HHHHHhhCCCEEEEEeCCCcccC---------CCcchHHHHHHhhhcchhHHHHHHHHHHHHhccc-hHHHHHHHHHHHh
Confidence 99999999999999999986431 1223333445555666666665554444432211 0123444445555
Q ss_pred hhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHHHHhHhCCCCCCEEEEEEeecCCCCChhhcCccccccccCCCCccc
Q 006251 376 RGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVVKFDPKTG 455 (654)
Q Consensus 376 r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al~~ak~~~~~gP~lI~v~T~KG~G~~~ae~~~~~~Hg~~~f~~~tg 455 (654)
+++..+ ..+|++|||+++++|||||+++|.++++++++. ++|++||++|.||+|++++|+++.+||+.++|++.++
T Consensus 234 ~~~~~p--~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~~~--~gP~lI~v~t~kg~G~~~~e~~~~~~H~~~~f~~~~~ 309 (621)
T 2o1s_A 234 KGMVVP--GTLFEELGFNYIGPVDGHDVLGLITTLKNMRDL--KGPQFLHIMTKKGRGYEPAEKDPITFHAVPKFDPSSG 309 (621)
T ss_dssp -----C--HHHHHHTTCEEEEEEETTCHHHHHHHHHHHHHS--CSEEEEEEECCCTTCCCCC------------------
T ss_pred hhccCh--hhHHHHCCCeEeeeeCCCCHHHHHHHHHHHHHc--CCCEEEEEEEecccCCChhhcCchhccCCCCCCCCcC
Confidence 554433 578999999999899999999999999999875 7999999999999999999988889999999998887
Q ss_pred ccccCCCCchhHHHHHHHHHHHHHhhCCcEEEEecCccCCCChhhHHHhCCCCccccchhHHHHHHHHHHHHhcCCeeEE
Q 006251 456 KQFKTKSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLASEGVKPFC 535 (654)
Q Consensus 456 ~~~~~~~~~~s~~~a~~~aL~~~~~~d~~vvvl~aDlg~s~~l~~f~~~fp~R~id~GIaE~~mvg~AaGlA~~G~~Pi~ 535 (654)
++.+.+....+|+++|+++|.+++++|++|+++++|+.+++++.+|+++||+||||+||+|++|+++|+|||++|++||+
T Consensus 310 ~~~~~~~~~~~~~~~~~~~l~~~~~~d~~v~~~~~d~~~~~~~~~~~~~~~~r~~~~gIaE~~~~~~a~G~A~~G~rp~~ 389 (621)
T 2o1s_A 310 CLPKSSGGLPSYSKIFGDWLCETAAKDNKLMAITPAMREGSGMVEFSRKFPDRYFDVAIAEQHAVTFAAGLAIGGYKPIV 389 (621)
T ss_dssp --------CCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTTTCHHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEE
T ss_pred cccccccchHHHHHHHHHHHHHHHhhCcCEEEEeCcccCCcChHHHHHhCCCceEecCcCHHHHHHHHHHHHHCCCEEEE
Confidence 64233334578999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred eehHHHHHhHHHHHHHhhhcCCCCEEEEEecCCccCCCCCCCCChhhHHHHhcCCCCEEEecCCHHHHHHHHHHHHhCCC
Q 006251 536 AIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDD 615 (654)
Q Consensus 536 ~tfa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~~g~dG~tHq~~edla~~r~iPnl~V~~PsD~~E~~~ll~~al~~~~ 615 (654)
++|++|++|++|||++++|++++||+++++++|++|+||+|||+.+|+++||++|||+|++|+|++|+++++++|++..+
T Consensus 390 ~~~~~F~~~a~dqi~~~~a~~~~pvv~~~~~~g~~g~~G~tH~~~~d~~~~~~iP~l~v~~P~d~~e~~~~l~~a~~~~~ 469 (621)
T 2o1s_A 390 AIYSTFLQRAYDQVLHDVAIQKLPVLFAIDRAGIVGADGQTHQGAFDLSYLRCIPEMVIMTPSDENECRQMLYTGYHYND 469 (621)
T ss_dssp EEETTGGGGGHHHHHHTTTTTTCCCEEEEESCBCCCTTCGGGCBCSHHHHTTTSTTCEEECCSSHHHHHHHHHHHHHCCS
T ss_pred EehHhHHHHHHHHHHHHHHhcCCCEEEEEECCccCCCCCCccCchHHHHHHhcCCCCEEEecCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999988899999999999999999999999999999999999999987558
Q ss_pred CcEEEEecCCCCCCccCCCCCCCCCcccCceEEecc
Q 006251 616 RPSCFRFPRGNGIGAVLPPNNKGTPLETSLDSWPMS 651 (654)
Q Consensus 616 ~P~~ir~~r~~~~~~~~p~~~~~~~~~iGKa~vi~~ 651 (654)
+|++||++|++.+..++|. ++.+++||++++++
T Consensus 470 ~Pv~i~~~r~~~~~~~~~~---~~~~~~G~~~~~~~ 502 (621)
T 2o1s_A 470 GPSAVRYPRGNAVGVELTP---LEKLPIGKGIVKRR 502 (621)
T ss_dssp SCEEEECCSSBCCCCCCCC---CCCCCTTCCEEEEC
T ss_pred CCEEEEeCCCCCCCCCCCc---cccccCCceEEeec
Confidence 9999999999865433332 26789999998864
No 3
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=100.00 E-value=7e-82 Score=721.00 Aligned_cols=431 Identities=22% Similarity=0.323 Sum_probs=368.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhc-cCCCCCCCccHHHHHHHHHhhcC-C-------CCcEEEecCCchH---HHHHHHcC
Q 006251 155 LSTEDLEQLAAELRADIVNSVSK-TGGHLSANLGVVELTLALHRVFN-T-------PDDKIIWDVGHQA---YVHKILTG 222 (654)
Q Consensus 155 l~~~~L~~la~~lR~~il~~v~~-~~GH~gsslg~vel~~aL~~v~~-~-------p~Dr~I~s~GH~a---Y~~~~l~G 222 (654)
|+.++|+++|++||..+++++++ ++||+|++||++|++++|+++|+ + ++||||||+||++ |+|++++|
T Consensus 1 ~~~~~l~~~a~~iR~~~i~~v~~a~~GH~g~~lg~~ei~~~L~~~~~~~p~~p~~~~rDrfvls~GH~~~~lYa~l~l~G 80 (632)
T 3l84_A 1 MNIQILQEQANTLRFLSADMVQKANSGHPGAPLGLADILSVLSYHLKHNPKNPTWLNRDRLVFSGGHASALLYSFLHLSG 80 (632)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHTTTCCCCTTCTTCTTSCEEEESSGGGHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcChhHHHHHHHHHHHhCcCCCCCCCCCCCEEEEcCCcccHHHHHHHHHhC
Confidence 56789999999999999999987 89999999999999999987765 2 4899999999999 99999999
Q ss_pred Ch---HHHHHHHhcCC-CCCCCCCCCCCccccCcccchhhHHHHHHHHHHHHHcCC-------CCeEEEEEcCCCcccch
Q 006251 223 RR---SRMNTMRKTSG-LAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGK-------NNNVISVIGDGAMTAGQ 291 (654)
Q Consensus 223 r~---~~l~~lrq~gg-l~G~p~~~es~~~~fg~G~lG~~is~AlGmAlA~kl~g~-------~~~VvaviGDGal~eG~ 291 (654)
++ ++|.+|||.++ ++|||++ +++++.+++|++|+++|+|+|||+|.++++. +++|||++|||+++||+
T Consensus 81 ~~~~~~~l~~~r~~~s~~~ghp~~-~~~g~~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~d~~v~~v~GDG~~~eG~ 159 (632)
T 3l84_A 81 YDLSLEDLKNFRQLHSKTPGHPEI-STLGVEIATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGI 159 (632)
T ss_dssp CSCCHHHHTTTTCTTCSSCSSCCT-TSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTTCCCCEEEEEEHHHHHSHH
T ss_pred CCCCHHHHHHHhcCCCCCCCCCCC-CCCCcccCCcchhhHHHHHHHHHHHHHhhccccccCCCCCeEEEEECCcchhhcc
Confidence 95 88999999998 5799999 8999999999999999999999999998754 89999999999999999
Q ss_pred HHHHHHHHhhcCC-CEEEEEECCCCCcccccccCCCCCchhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHH
Q 006251 292 AYEAMNNAGFLDA-NLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAK 370 (654)
Q Consensus 292 ~~EAln~A~~~~l-nLi~Il~dN~~~s~pt~~~~g~~~~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k 370 (654)
+||||++|+++++ |+++|+|||++++ ++..... . ..++
T Consensus 160 ~~Eal~~A~~~~L~~livi~nnN~~~i------~~~~~~~--~------------------------------~~d~--- 198 (632)
T 3l84_A 160 SYEACSLAGLHKLDNFILIYDSNNISI------EGDVGLA--F------------------------------NENV--- 198 (632)
T ss_dssp HHHHHHHHHHTTCTTEEEEEEECSEET------TEEGGGT--C------------------------------CCCH---
T ss_pred HHHHHHHHHHcCCCcEEEEEECCCccc------ccchhhh--c------------------------------ChhH---
Confidence 9999999999986 5999999998643 1111100 0 0112
Q ss_pred HHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHHHHhHhCCCCCCEEEEEEeecCCCCChhhcCcccccccc--
Q 006251 371 VDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVV-- 448 (654)
Q Consensus 371 ~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al~~ak~~~~~gP~lI~v~T~KG~G~~~ae~~~~~~Hg~~-- 448 (654)
..+|++|||+++ +|||||+++|.++++++++ .++|++||++|.||+|++++|+ ..+|||.+
T Consensus 199 -------------~~~~~a~G~~~~-~vdGhd~~~l~~al~~A~~--~~~P~lI~v~T~kG~G~~~~e~-~~~~Hg~~l~ 261 (632)
T 3l84_A 199 -------------KMRFEAQGFEVL-SINGHDYEEINKALEQAKK--STKPCLIIAKTTIAKGAGELEG-SHKSHGAPLG 261 (632)
T ss_dssp -------------HHHHHHTTCEEE-EEETTCHHHHHHHHHHHHT--CSSCEEEEEECCTTTTCGGGTT-CGGGSSSCCC
T ss_pred -------------HHHHHHcCCeEE-EEeeCCHHHHHHHHHHHHh--CCCCEEEEEeeEeeecCCCCCC-cccccCCCCC
Confidence 234999999999 9999999999999999987 3799999999999999999875 46899986
Q ss_pred -----------------CCCCcc------------ccccc--------------------C-----------CCCchhHH
Q 006251 449 -----------------KFDPKT------------GKQFK--------------------T-----------KSPTLTYT 468 (654)
Q Consensus 449 -----------------~f~~~t------------g~~~~--------------------~-----------~~~~~s~~ 468 (654)
+|+..+ +++.. + .......+
T Consensus 262 ~e~~~~~~~~l~~~~~~~f~v~~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~a~r 341 (632)
T 3l84_A 262 EEVIKKAKEQAGFDPNISFHIPQASKIRFESAVELGDLEEAKWKDKLEKSAKKELLERLLNPDFNKIAYPDFKGKDLATR 341 (632)
T ss_dssp HHHHHHHHHHHTCCTTCCSCCCHHHHHHHHTHHHHHHHHHHHHHHHHHHSSCHHHHHHHHSCCSTTCCCCCCTTCCBCHH
T ss_pred HHHHHHHHHHhCCCCCCCccCChHHHHHHHHHHhhcchhHHHHHHHhhcccCchhhhhhCccchhhhcchhccccchHHH
Confidence 354321 11000 0 01245678
Q ss_pred HHHHHHHHHHHhhCCcEEEEecCccCCCChh-hHHHhC-CCCccccchhHHHHHHHHHHHHhc-CCeeEEeehHHHHHhH
Q 006251 469 QYFAESLIKEAETDDKIVAIHAAMGGGTGLN-YFQKRF-PDRCFDVGIAEQHAVTFAAGLASE-GVKPFCAIYSSFLQRG 545 (654)
Q Consensus 469 ~a~~~aL~~~~~~d~~vvvl~aDlg~s~~l~-~f~~~f-p~R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~tfa~Fl~ra 545 (654)
++++++|.++++.+|+++++++|+++++++. .+.++| |+||||+||+||+|+++|+|||++ |++||+++|++|+.|+
T Consensus 342 ~a~~~~l~~l~~~~p~~v~~~aDl~~s~~~~~~~~~~f~p~R~~d~GIaE~~~v~~a~GlA~~gG~~P~~~~f~~F~~~~ 421 (632)
T 3l84_A 342 DSNGEILNVLAKNLEGFLGGSADLGPSNKTELHSMGDFVEGKNIHFGIREHAMAAINNAFARYGIFLPFSATFFIFSEYL 421 (632)
T ss_dssp HHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTSCBTTTSSEEECCSCHHHHHHHHHHHHHHSSCEEEEEEEGGGHHHH
T ss_pred HHHHHHHHHHHhhCCCEEEEecccCCccCcchhcccccCCCCeEEeCccHHHHHHHHHHHHHcCCCEEEEEecHHHHHHH
Confidence 8999999999999999999999998776553 233678 999999999999999999999999 9999999999999999
Q ss_pred HHHHHHhhhcCCCCEEEEEecCCc-cCCCCCCCCChhhHHHHhcCCCCEEEecCCHHHHHHHHHHHHhCCCCcEEEEecC
Q 006251 546 YDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPR 624 (654)
Q Consensus 546 ~dQI~~~~a~~~lpV~~v~~~~G~-~g~dG~tHq~~edla~~r~iPnl~V~~PsD~~E~~~ll~~al~~~~~P~~ir~~r 624 (654)
+|||+ ++|++++||++++++.|+ +|+||+|||++||+++||+||||+|++|+|++|++++|++|++ +++|+|||++|
T Consensus 422 ~~~ir-~~a~~~~pv~~~~t~~g~g~G~dG~THq~~ed~a~lr~iP~l~V~~P~d~~e~~~~l~~A~~-~~~Pv~ir~~r 499 (632)
T 3l84_A 422 KPAAR-IAALMKIKHFFIFTHDSIGVGEDGPTHQPIEQLSTFRAMPNFLTFRPADGVENVKAWQIALN-ADIPSAFVLSR 499 (632)
T ss_dssp HHHHH-HHHHHTCCCEEEEECCSGGGCTTCGGGSCSSHHHHHHHSSSCEEECCSSHHHHHHHHHHHHH-CSSCEEEECCS
T ss_pred HHHHH-HHhccCCCEEEEEECCCcCCCCCCCCCCCHhHHHHHhcCCCCEEEecCCHHHHHHHHHHHHh-CCCCEEEEEcC
Confidence 99985 689999999999988877 7999999999999999999999999999999999999999986 78999999999
Q ss_pred CCCCCccCCCCCCCCCcccCce-EEecc
Q 006251 625 GNGIGAVLPPNNKGTPLETSLD-SWPMS 651 (654)
Q Consensus 625 ~~~~~~~~p~~~~~~~~~iGKa-~vi~~ 651 (654)
++. ++. .+.+..++||+ +|+++
T Consensus 500 ~~~----~~~-~~~~~~~~~~g~~vl~~ 522 (632)
T 3l84_A 500 QKL----KAL-NEPVFGDVKNGAYLLKE 522 (632)
T ss_dssp SCB----CCC-CCCSBCCGGGSSEEEEC
T ss_pred CCC----CCC-ccccccccccccEEEEe
Confidence 874 222 12245677876 77765
No 4
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.8e-81 Score=723.02 Aligned_cols=433 Identities=18% Similarity=0.263 Sum_probs=370.1
Q ss_pred HHHHHHHH-HHHHHHHHHHhhc-cCCCCCCCccHHHHHHHHHh-hcC-C-------CCcEEEecCCchH---HHHHHHcC
Q 006251 157 TEDLEQLA-AELRADIVNSVSK-TGGHLSANLGVVELTLALHR-VFN-T-------PDDKIIWDVGHQA---YVHKILTG 222 (654)
Q Consensus 157 ~~~L~~la-~~lR~~il~~v~~-~~GH~gsslg~vel~~aL~~-v~~-~-------p~Dr~I~s~GH~a---Y~~~~l~G 222 (654)
.++|+++| ++||..+++++.+ ++||+|++||++|++++||+ +|+ + ++||||||+||++ |+|++|+|
T Consensus 19 ~~~l~~~a~~~iR~~~~~~v~~a~sGH~g~~ls~a~i~~~L~~~~l~~~p~~p~~~~rDrfvls~GH~s~~lYa~l~l~G 98 (700)
T 3rim_A 19 WTEIDSAAVDTIRVLAADAVQKVGNGHPGTAMSLAPLAYTLFQRTMRHDPSDTHWLGRDRFVLSAGHSSLTLYIQLYLGG 98 (700)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHTHHHHHHHHHTTCCCCTTCTTCTTCCEEEESSTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHhCCCCCCCCCCCCCeEEECCCchhHHHHHHHHHhC
Confidence 46799999 8999999999987 68999999999999999986 675 3 3899999999999 99999999
Q ss_pred C---hHHHHHHHhcCC-CCCCCCCCCCCccccCcccchhhHHHHHHHHHHHHHc-------------CCCCeEEEEEcCC
Q 006251 223 R---RSRMNTMRKTSG-LAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDIL-------------GKNNNVISVIGDG 285 (654)
Q Consensus 223 r---~~~l~~lrq~gg-l~G~p~~~es~~~~fg~G~lG~~is~AlGmAlA~kl~-------------g~~~~VvaviGDG 285 (654)
+ .++|.+|||.|+ ++|||++.+++++.+++|++|+++|+|+|||+|.|++ +.+++|||++|||
T Consensus 99 ~~~~~~~l~~fr~~gs~~~ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~k~~~~~~~~~~~~~~~~~~~~v~~~~GDG 178 (700)
T 3rim_A 99 FGLELSDIESLRTWGSKTPGHPEFRHTPGVEITTGPLGQGLASAVGMAMASRYERGLFDPDAEPGASPFDHYIYVIASDG 178 (700)
T ss_dssp SSCCHHHHTTTTSTTCSCCSSCCBTTBTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTSCTTCSTTCCCEEEEEEHH
T ss_pred CCCCHHHHHHhhcCCCCCCCCCCCCCCCCccccccccCCcchHHHHHHHHHHHHhhhccccccccccCCCCeEEEEECCc
Confidence 9 688999999998 7999999889999999999999999999999999985 5689999999999
Q ss_pred CcccchHHHHHHHHhhcCC-CEEEEEECCCCCcccccccCCCCCchhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCch
Q 006251 286 AMTAGQAYEAMNNAGFLDA-NLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQT 364 (654)
Q Consensus 286 al~eG~~~EAln~A~~~~l-nLi~Il~dN~~~s~pt~~~~g~~~~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~ 364 (654)
+++||++|||+|+|+.+++ |||+|+|||++++ ++++... ..
T Consensus 179 ~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~si------~~~~~~~--------------------------------~~ 220 (700)
T 3rim_A 179 DIEEGVTSEASSLAAVQQLGNLIVFYDRNQISI------EDDTNIA--------------------------------LC 220 (700)
T ss_dssp HHHSHHHHHHHHHHHHTTCTTEEEEEEECSEET------TEEGGGT--------------------------------CC
T ss_pred ccccChHHHHHHHHHHcCCCcEEEEEECCCccc------ccchhhc--------------------------------cc
Confidence 9999999999999999987 5999999999643 2211100 00
Q ss_pred HHHHHHHHHHhhhccCCChhhhhhhcCCeEEeec-CCCCHHHHHHHHHHhHhCCCCCCEEEEEEeecCCCCChhhcCccc
Q 006251 365 HEVAAKVDEYARGLISASGSTFFEELGLYYIGPV-DGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADR 443 (654)
Q Consensus 365 ~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~v-DGhDi~~L~~al~~ak~~~~~gP~lI~v~T~KG~G~~~ae~~~~~ 443 (654)
+++.+ +|++|||+++ .| ||||+++|.++++++++. .++|++|+++|+||+|++++|+. .+
T Consensus 221 ~~~~~----------------~~~a~G~~~~-~V~DG~D~~al~~Al~~A~~~-~~~P~lI~~~T~kG~G~~~~e~~-~~ 281 (700)
T 3rim_A 221 EDTAA----------------RYRAYGWHVQ-EVEGGENVVGIEEAIANAQAV-TDRPSFIALRTVIGYPAPNLMDT-GK 281 (700)
T ss_dssp CCHHH----------------HHHHHTCEEE-EEECTTCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTTCTTTTTS-HH
T ss_pred hhHHH----------------HHHHcCCeEE-EECCCCCHHHHHHHHHHHHHc-CCCCEEEEEEEEeeecCCccCCC-cc
Confidence 22333 4999999999 57 999999999999999873 47999999999999999999965 67
Q ss_pred cccccC-------------------CCCcc------------ccc------------------------------cc---
Q 006251 444 MHGVVK-------------------FDPKT------------GKQ------------------------------FK--- 459 (654)
Q Consensus 444 ~Hg~~~-------------------f~~~t------------g~~------------------------------~~--- 459 (654)
||+.+. |+..+ |++ ++
T Consensus 282 ~Hg~~~~~e~~~~~~~~l~~~~~~~f~v~~~v~~~~~~~~~~g~~~~~~w~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~ 361 (700)
T 3rim_A 282 AHGAALGDDEVAAVKKIVGFDPDKTFQVREDVLTHTRGLVARGKQAHERWQLEFDAWARREPERKALLDRLLAQKLPDGW 361 (700)
T ss_dssp HHHSCCCHHHHHHHHHHHTCCTTCSSCCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCCTTT
T ss_pred ccCCCCCHHHHHHHHHHcCCCcccCccCCHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhChHHHHHHHHHhccCCCcch
Confidence 999763 43211 110 00
Q ss_pred ----C----CCCchhHHHHHHHHHHHHHhhCCcEEEEecCccCCCC-----hhhHHHhC------C----CCccccchhH
Q 006251 460 ----T----KSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTG-----LNYFQKRF------P----DRCFDVGIAE 516 (654)
Q Consensus 460 ----~----~~~~~s~~~a~~~aL~~~~~~d~~vvvl~aDlg~s~~-----l~~f~~~f------p----~R~id~GIaE 516 (654)
+ .....+++++++++|.+++++||+++++++|++.+++ +..|+++| | +||||+||+|
T Consensus 362 ~~~~p~~~~~~~~~atr~a~~~~L~~l~~~~p~vv~~saDl~~s~~t~~~~~~~f~~~~~~~~~~p~~~~~R~id~GIaE 441 (700)
T 3rim_A 362 DADLPHWEPGSKALATRAASGAVLSALGPKLPELWGGSADLAGSNNTTIKGADSFGPPSISTKEYTAHWYGRTLHFGVRE 441 (700)
T ss_dssp TSSCCCCCTTSSCEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEESCGGGCCSSCCEETTCCEEECCSCH
T ss_pred hhhcccccccccchHHHHHHHHHHHHHHhhCCCEEEEeCCccCCCCcccccchhhcccccccccCCcccCCceeecCccH
Confidence 0 0134568899999999999999999999999987765 46888898 8 5999999999
Q ss_pred HHHHHHHHHHHhc-CCeeEEeehHHHHHhHHHHHHHhhhcCCCCEEEEEecCCc-cCCCCCCCCChhhHHHHhcCCCCEE
Q 006251 517 QHAVTFAAGLASE-GVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVV 594 (654)
Q Consensus 517 ~~mvg~AaGlA~~-G~~Pi~~tfa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~-~g~dG~tHq~~edla~~r~iPnl~V 594 (654)
|+|+++|+|||++ |++||+++|+.|+.++++|| +++|++++||+++++|+|+ +|+||+|||++||+++||+||||+|
T Consensus 442 ~~mv~~A~GlA~~gG~~Pv~~tF~~F~d~~~~~i-r~~al~~lpvv~v~thdg~gvG~dG~THq~ied~a~lr~iPnl~V 520 (700)
T 3rim_A 442 HAMGAILSGIVLHGPTRAYGGTFLQFSDYMRPAV-RLAALMDIDTIYVWTHDSIGLGEDGPTHQPIEHLSALRAIPRLSV 520 (700)
T ss_dssp HHHHHHHHHHHHHSSCEEEEEEEGGGGGGGHHHH-HHHHHHTCCCEEEEECCSGGGCTTCTTTSCSSHHHHHHTSTTCEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEecHHHHHHHHHHH-HHhcCCCCCEEEEEeCCCcccCCCCCccCChhHHHHHhcCCCCEE
Confidence 9999999999999 99999999999998899996 4689999999999998877 7999999999999999999999999
Q ss_pred EecCCHHHHHHHHHHHHhCCC--CcEEEEecCCCCCCccCCCCCCCCCcccCceEEecc
Q 006251 595 MAPSDEAELMHMVATAAVIDD--RPSCFRFPRGNGIGAVLPPNNKGTPLETSLDSWPMS 651 (654)
Q Consensus 595 ~~PsD~~E~~~ll~~al~~~~--~P~~ir~~r~~~~~~~~p~~~~~~~~~iGKa~vi~~ 651 (654)
++|+|++|++++|++|++.++ +|++||++|++.+. ++.. ..+.+++|+ .|+++
T Consensus 521 ~~Pad~~e~~~~l~~Ai~~~~~~~Pv~ir~~r~~~~~--~~~~-~~~~~~~G~-~vlr~ 575 (700)
T 3rim_A 521 VRPADANETAYAWRTILARRNGSGPVGLILTRQGVPV--LDGT-DAEGVARGG-YVLSD 575 (700)
T ss_dssp ECCSSHHHHHHHHHHHHTTTTCSSCEEEECCSSEECC--CTTC-CHHHHHHSC-EEEEC
T ss_pred EeCCCHHHHHHHHHHHHHccCCCCCEEEEeccccCCC--cCcc-cccccCCCc-EEEec
Confidence 999999999999999987656 79999999997543 2211 136788998 67765
No 5
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=100.00 E-value=1.1e-81 Score=724.87 Aligned_cols=443 Identities=20% Similarity=0.301 Sum_probs=365.2
Q ss_pred ccCCCCHHHHHHHH-HHHHHHHHHHhhc-cCCCCCCCccHHHHHHHHHh-hcC-C-------CCcEEEecCCchH---HH
Q 006251 151 HMKNLSTEDLEQLA-AELRADIVNSVSK-TGGHLSANLGVVELTLALHR-VFN-T-------PDDKIIWDVGHQA---YV 216 (654)
Q Consensus 151 ~~~~l~~~~L~~la-~~lR~~il~~v~~-~~GH~gsslg~vel~~aL~~-v~~-~-------p~Dr~I~s~GH~a---Y~ 216 (654)
.++|+..++|+++| ++||..+++++.+ ++||+|++||++|++++||+ +|+ + ++||||||+||++ |+
T Consensus 20 ~~~~~~~~~l~~~a~~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~l~~~p~~p~~~~rDrfvls~GH~~~~lYa 99 (690)
T 3m49_A 20 FQSNAMSHSIEQLSINTIRTLSIDAIEKANSGHPGMPMGAAPMAYTLWTQFMKHNPNNPTWFNRDRFVLSAGHGSMLLYS 99 (690)
T ss_dssp ------CCSHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTSCEEEESSGGGHHHHHH
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEECCccHHHHHHH
Confidence 36777777899999 8999999999987 89999999999999999985 554 1 4899999999999 99
Q ss_pred HHHHcCC---hHHHHHHHhcCC-CCCCCCCCCCCccccCcccchhhHHHHHHHHHHHHHcCC----------CCeEEEEE
Q 006251 217 HKILTGR---RSRMNTMRKTSG-LAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGK----------NNNVISVI 282 (654)
Q Consensus 217 ~~~l~Gr---~~~l~~lrq~gg-l~G~p~~~es~~~~fg~G~lG~~is~AlGmAlA~kl~g~----------~~~Vvavi 282 (654)
|++|+|+ .++|.+|||+|+ ++|||++.+++++.+++|++|+++|+|+|||+|.++++. +++|||++
T Consensus 100 ~l~l~G~~~~~~~l~~~rq~gs~~~Ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~v~~i~ 179 (690)
T 3m49_A 100 LLHLSGYDVTMDDLKNFRQWGSKTPGHPEYGHTAGVDATTGPLGQGIATAVGMAMAERHLAAKYNRDAYNIVDHYTYAIC 179 (690)
T ss_dssp HHHHTTSSCCHHHHTTTTCTTCSSCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCSCCCEEEEE
T ss_pred HHHHHCCCCCHHHHHhhccCCCCCCCCCCCCCCCccccCCccccccHHHHHHHHHHHHHhhccccccccccCCCeEEEEE
Confidence 9999999 789999999998 569999989999999999999999999999999997653 89999999
Q ss_pred cCCCcccchHHHHHHHHhhcCC-CEEEEEECCCCCcccccccCCCCCchhhhhHHHHHhhhchhHHHHHHHHHHHHhhcC
Q 006251 283 GDGAMTAGQAYEAMNNAGFLDA-NLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIG 361 (654)
Q Consensus 283 GDGal~eG~~~EAln~A~~~~l-nLi~Il~dN~~~s~pt~~~~g~~~~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g 361 (654)
|||++++|++|||+++|+++++ |+++|+|||++++ ++..... .
T Consensus 180 GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~~i------~~~~~~~--~---------------------------- 223 (690)
T 3m49_A 180 GDGDLMEGVSAEASSLAAHLQLGRLVVLYDSNDISL------DGDLNRS--F---------------------------- 223 (690)
T ss_dssp CHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSBCS------SSBGGGT--C----------------------------
T ss_pred CchhhhhccHHHHHHHHHHhCCCeEEEEEECCCeec------ccchhhc--c----------------------------
Confidence 9999999999999999999986 5999999999653 2221100 0
Q ss_pred CchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHHHHhHhCCCCCCEEEEEEeecCCCCChhhcCc
Q 006251 362 GQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAA 441 (654)
Q Consensus 362 ~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al~~ak~~~~~gP~lI~v~T~KG~G~~~ae~~~ 441 (654)
..++ ..+|++|||++++++||||+++|.++++++++. .++|++|+|+|.||+|++++|+ +
T Consensus 224 --~~d~----------------~~~~~a~G~~~~~v~DG~d~~~l~~Al~~a~~~-~~~P~lI~v~T~kG~G~~~~~~-~ 283 (690)
T 3m49_A 224 --SESV----------------EDRYKAYGWQVIRVEDGNDIEAIAKAIEEAKAD-EKRPTLIEVRTTIGFGSPNKSG-K 283 (690)
T ss_dssp --CCCH----------------HHHHHHHTCEEEEESCTTCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTTCTTTTT-S
T ss_pred --chhH----------------HHHHHHcCCcEEEEecCCCHHHHHHHHHHHHhc-CCCCEEEEEEeecccccCcccC-c
Confidence 0112 234999999999666999999999999999872 3799999999999999987664 5
Q ss_pred ccccccc-------------------CCCCcccc-------------c--------------------------cc----
Q 006251 442 DRMHGVV-------------------KFDPKTGK-------------Q--------------------------FK---- 459 (654)
Q Consensus 442 ~~~Hg~~-------------------~f~~~tg~-------------~--------------------------~~---- 459 (654)
.+|||.+ +|+..++. . ..
T Consensus 284 ~~~Hg~~~~~e~~~~~~~~l~~~~~~~F~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~a~~~~~~~~~~lp 363 (690)
T 3m49_A 284 SASHGSPLGVEETKLTKEAYAWTAEQDFHVAEEVYENFRKTVQDVGETAQAEWNTMLGEYAQAYPELANELQAAMNGLLP 363 (690)
T ss_dssp GGGTSSCCCHHHHHHHHHHTTCCCCSTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTCCC
T ss_pred ccccCCCCCHHHHHHHHHHhCCCCCCCCcCChhHHHHHHHHHhhhcchhhHHHHHHHHHHHHhCHHHHHHHHHHhcccCc
Confidence 7899986 35433220 0 00
Q ss_pred -------C---CCCchhHHHHHHHHHHHHHhhCCcEEEEecCccCCCCh-----hhHHHhC-CCCccccchhHHHHHHHH
Q 006251 460 -------T---KSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGL-----NYFQKRF-PDRCFDVGIAEQHAVTFA 523 (654)
Q Consensus 460 -------~---~~~~~s~~~a~~~aL~~~~~~d~~vvvl~aDlg~s~~l-----~~f~~~f-p~R~id~GIaE~~mvg~A 523 (654)
+ ......++++++++|.++++++|+++++++|+++++++ ++|+++| |+||||+||+||+|+++|
T Consensus 364 ~~~~~~~~~~~~~~~~a~R~a~g~~L~~~~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~~~R~~d~GIaE~~mv~~A 443 (690)
T 3m49_A 364 EGWEQNLPTYELGSKAATRNSSGAVINAIAESVPSFFGGSADLAGSNKTYMNNEKDFTRDDYSGKNIWYGVREFAMGAAM 443 (690)
T ss_dssp TTGGGGCCCCCTTCEEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTSCBCBTTBTTCCEEECCSCHHHHHHHH
T ss_pred hhhhhhccccccccchHHHHHHHHHHHHHHhhCCCEEEEeCcccccCCccccccccchhhcCCCceEEcCchHHHHHHHH
Confidence 0 01234788999999999999999999999999877654 5788776 899999999999999999
Q ss_pred HHHHhc-CCeeEEeehHHHHHhHHHHHHHhhhcCCCCEEEEEecCCc-cCCCCCCCCChhhHHHHhcCCCCEEEecCCHH
Q 006251 524 AGLASE-GVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEA 601 (654)
Q Consensus 524 aGlA~~-G~~Pi~~tfa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~-~g~dG~tHq~~edla~~r~iPnl~V~~PsD~~ 601 (654)
+|||++ |++||++||+.|...+..|| +++|++++||+++++++|+ +|+||+|||++||+++||+||||+|++|+|++
T Consensus 444 ~GlA~~gG~~P~~~tf~~Fs~f~~~ai-r~~al~~lpVv~v~~~~gigvG~dG~THq~ied~a~lr~iPnl~V~~Pad~~ 522 (690)
T 3m49_A 444 NGIALHGGLKTYGGTFFVFSDYLRPAI-RLAALMQLPVTYVFTHDSIAVGEDGPTHEPIEQLAALRAMPNVSVIRPADGN 522 (690)
T ss_dssp HHHHHHSSCEEEEEEEGGGGGGGHHHH-HHHHHHTCCCEEEEECCSGGGCTTCGGGCCSSHHHHHHTSTTCEEECCSSHH
T ss_pred HHHHHcCCCEEEEEecHHHHHHHHHHH-HHHHhcCCCcEEEEECCCcCCCCCCCccCCHHHHHHHhcCCCCEEEeeCCHH
Confidence 999999 89999999877765555565 5689999999999999998 89999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCcEEEEecCCCCCCccCCCCCCCCCcccCceEEecc
Q 006251 602 ELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLETSLDSWPMS 651 (654)
Q Consensus 602 E~~~ll~~al~~~~~P~~ir~~r~~~~~~~~p~~~~~~~~~iGKa~vi~~ 651 (654)
|++++|++|++..++|++||++|++.+......+...+.+++|+ .|+++
T Consensus 523 E~~~~l~~Ai~~~~~Pv~ir~~R~~~p~~~~~~~~~~~~~~~G~-~vlr~ 571 (690)
T 3m49_A 523 ESVAAWRLALESTNKPTALVLTRQDLPTLEGAKDDTYEKVAKGA-YVVSA 571 (690)
T ss_dssp HHHHHHHHHHHCSSSCEEEECCSSEEECCHHHHTTHHHHHHTSC-EEEEC
T ss_pred HHHHHHHHHHHcCCCCEEEEeecccCCCCCccccccccccCCCe-EEEEe
Confidence 99999999987668999999999875421100000014677887 56654
No 6
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=100.00 E-value=7.7e-80 Score=704.26 Aligned_cols=435 Identities=24% Similarity=0.383 Sum_probs=368.7
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHHhhc-cCCCCCCCccHHHHHHHHHh-hc----CC----CCcEEEecCCchH---HHH
Q 006251 151 HMKNLSTEDLEQLAAELRADIVNSVSK-TGGHLSANLGVVELTLALHR-VF----NT----PDDKIIWDVGHQA---YVH 217 (654)
Q Consensus 151 ~~~~l~~~~L~~la~~lR~~il~~v~~-~~GH~gsslg~vel~~aL~~-v~----~~----p~Dr~I~s~GH~a---Y~~ 217 (654)
.+.+++.++|+++|++||.++++++.+ ++||+|++||++|++++||+ .+ ++ ++||||||+||++ |+|
T Consensus 4 ~~~~~~~~~l~~~a~~iR~~~i~~~~~~~~GH~g~~l~~~e~~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~~~~ly~~ 83 (616)
T 3mos_A 4 KPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKSQDPRNPHNDRFVLSKGHAAPILYAV 83 (616)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHTTHHHHHHHHHTTCBCCTTCTTCTTSCEEEESSGGGHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHHhcCCCcCCcchhHHHHHHHHHHHhhccCCCCCCCCCCCeEEEcCccHHHHHHHH
Confidence 455677899999999999999999987 67999999999999999984 32 23 3899999999999 899
Q ss_pred HHHcCC--hHHHHHHHhcC-CCCCCCCCCCCCccccCcccchhhHHHHHHHHHHHHHcCC-CCeEEEEEcCCCcccchHH
Q 006251 218 KILTGR--RSRMNTMRKTS-GLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGK-NNNVISVIGDGAMTAGQAY 293 (654)
Q Consensus 218 ~~l~Gr--~~~l~~lrq~g-gl~G~p~~~es~~~~fg~G~lG~~is~AlGmAlA~kl~g~-~~~VvaviGDGal~eG~~~ 293 (654)
++++|+ .++|.+|||+| +++|||++.++.+ .+++|++|+++|+|+|||+|.++.+. +++|||++|||++++|++|
T Consensus 84 ~~l~G~~~~~~l~~~r~~~s~l~ghp~~~~~~~-d~~~G~lG~gl~~A~G~AlA~~~~~~~~~~vv~v~GDG~~~eG~~~ 162 (616)
T 3mos_A 84 WAEAGFLAEAELLNLRKISSDLDGHPVPKQAFT-DVATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGSVW 162 (616)
T ss_dssp HHHTTSSCGGGGGGTTCTTCSCCSSCCTTSTTC-SSCCCSTTCHHHHHHHHHHHHHHTSCCSCCEEEEEETGGGGSHHHH
T ss_pred HHHcCCCCHHHHHHhccCCCCCCCCCCCCCCcc-cccccccCCccHHHHHHHHHHHHhCCCCCEEEEEECccccccCcHH
Confidence 999996 68899999998 6999999876544 47999999999999999999987665 6899999999999999999
Q ss_pred HHHHHHhhcCC-CEEEEEECCCCCcccccccCCCCCchhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHH
Q 006251 294 EAMNNAGFLDA-NLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVD 372 (654)
Q Consensus 294 EAln~A~~~~l-nLi~Il~dN~~~s~pt~~~~g~~~~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~ 372 (654)
||||+|+.+++ |+++|+|||++++ ++...... ...++.+
T Consensus 163 Eal~~A~~~~l~~livi~nnN~~~i------~~~~~~~~-------------------------------~~~~~~~--- 202 (616)
T 3mos_A 163 EAMAFASIYKLDNLVAILDINRLGQ------SDPAPLQH-------------------------------QMDIYQK--- 202 (616)
T ss_dssp HHHHHHHHTTCTTEEEEEEECSBCS------SSBCTTTT-------------------------------CHHHHHH---
T ss_pred HHHHHHHHcCCCcEEEEEECCCCCC------cCCccccc-------------------------------ChHHHHH---
Confidence 99999999986 5899999998643 22211000 0122332
Q ss_pred HHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHHHHhHhCCCCCCEEEEEEeecCCCCChhhcCccccccccC---
Q 006251 373 EYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVVK--- 449 (654)
Q Consensus 373 ~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al~~ak~~~~~gP~lI~v~T~KG~G~~~ae~~~~~~Hg~~~--- 449 (654)
+|++|||+++ +|||||+++|.++++++ .++|++|||+|.||+|++.+| ++.+||+.+.
T Consensus 203 -------------~~~a~G~~~~-~VdG~d~~~l~~al~~~----~~~P~lI~v~T~kg~G~~~~e-~~~~~Hg~~~~~~ 263 (616)
T 3mos_A 203 -------------RCEAFGWHAI-IVDGHSVEELCKAFGQA----KHQPTAIIAKTFKGRGITGVE-DKESWHGKPLPKN 263 (616)
T ss_dssp -------------HHHHTTCEEE-EEETTCHHHHHHHHHSC----CSSCEEEEEECCTTTTSTTTT-TCSSCTTCCCCHH
T ss_pred -------------HHHHcCCeEE-EEcCCCHHHHHHHHHhc----CCCCEEEEEEEeccccccccc-CchhhcCCCCCHH
Confidence 4999999998 89999999999999765 279999999999999998877 4578999753
Q ss_pred --------CC--CcccccccC------------------------CCCchhHHHHHHHHHHHHHhhCCcEEEEecCccCC
Q 006251 450 --------FD--PKTGKQFKT------------------------KSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGG 495 (654)
Q Consensus 450 --------f~--~~tg~~~~~------------------------~~~~~s~~~a~~~aL~~~~~~d~~vvvl~aDlg~s 495 (654)
++ .++++...+ .....+++++++++|.+++++|++|+++++|++++
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~r~a~~~~L~~l~~~d~~vv~~~aD~~~~ 343 (616)
T 3mos_A 264 MAEQIIQEIYSQIQSKKKILATPPQEDAPSVDIANIRMPSLPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTKNS 343 (616)
T ss_dssp HHHHHHHHHHHTCCCCCCCCCBCCCCCCCCCCCSCCCCSSCCCCCTTCBCCHHHHHHHHHHHHHHHCTTEEEEESSCHHH
T ss_pred HHHHHHHHHHHHHHhhhhhCcCccchhhhhhhhhccccCCCcccccccchHHHHHHHHHHHHHHhhCCCEEEEeCCcCCC
Confidence 10 012211100 11234677999999999999999999999999988
Q ss_pred CChhhHHHhCCCCccccchhHHHHHHHHHHHHhcCC-eeEEeehHHHHHhHHHHHHHhhhcCCCCEEEEEecCCc-cCCC
Q 006251 496 TGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLASEGV-KPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGAD 573 (654)
Q Consensus 496 ~~l~~f~~~fp~R~id~GIaE~~mvg~AaGlA~~G~-~Pi~~tfa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~-~g~d 573 (654)
+.++.|+++||+||||+||+||+|+++|+|||++|+ +|++.+|++|++|++|||++. +++++||+++++++|+ +|+|
T Consensus 344 ~~~~~~~~~~p~R~~d~gIaE~~~v~~a~G~A~~G~~~~~~~~f~~Fl~~a~dqi~~~-a~~~~~v~~v~~~~g~~~G~d 422 (616)
T 3mos_A 344 TFSEIFKKEHPDRFIECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRMA-AISESNINLCGSHCGVSIGED 422 (616)
T ss_dssp HSHHHHHHHCGGGEEECCSCHHHHHHHHHHHHGGGCCEEEEEEEGGGGGGGHHHHHHH-HHTTCCEEEEEESBSGGGCTT
T ss_pred cchhhHHHhCCCCeEEcCccHHHHHHHHHHHHHcCCCCEEEEehHHHHHHHHHHHHHH-HHhCCCeEEEEECCCccccCC
Confidence 889999999999999999999999999999999997 799999999999999999875 8999999999999998 7999
Q ss_pred CCCCCChhhHHHHhcCCCCEEEecCCHHHHHHHHHHHHhCCCCcEEEEecCCCCCCccCCCCCCCCCcccCceEEecc
Q 006251 574 GPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLETSLDSWPMS 651 (654)
Q Consensus 574 G~tHq~~edla~~r~iPnl~V~~PsD~~E~~~ll~~al~~~~~P~~ir~~r~~~~~~~~p~~~~~~~~~iGKa~vi~~ 651 (654)
|+|||+.||+++||++|||+|++|+|++|++.++++++. .++|+++|++|++.+. .+. ..+++++||++|+++
T Consensus 423 G~tH~~~ed~a~l~~iP~l~V~~P~d~~e~~~~l~~a~~-~~gp~~ir~~r~~~p~-~~~---~~~~~~~Gka~vl~e 495 (616)
T 3mos_A 423 GPSQMALEDLAMFRSVPTSTVFYPSDGVATEKAVELAAN-TKGICFIRTSRPENAI-IYN---NNEDFQVGQAKVVLK 495 (616)
T ss_dssp CGGGCBSSHHHHHHTSTTEEEECCCSHHHHHHHHHHHHT-CCSEEEEECCSSCCBC-CSC---TTCCCCTTCCEEEEC
T ss_pred CCcccCHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHh-cCCCEEEEEeCCCCCc-cCC---CcccccCCeEEEEEe
Confidence 999999999999999999999999999999999999975 6799999999987442 221 346789999999875
No 7
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=100.00 E-value=3.1e-80 Score=711.22 Aligned_cols=415 Identities=22% Similarity=0.332 Sum_probs=354.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-cCCCCCCCccHHHHHHHHHh---hcCC------CCcEEEecCCchH---HHHHHHcCC
Q 006251 157 TEDLEQLAAELRADIVNSVSK-TGGHLSANLGVVELTLALHR---VFNT------PDDKIIWDVGHQA---YVHKILTGR 223 (654)
Q Consensus 157 ~~~L~~la~~lR~~il~~v~~-~~GH~gsslg~vel~~aL~~---v~~~------p~Dr~I~s~GH~a---Y~~~~l~Gr 223 (654)
+..++++|++||..+++++++ ++||+|++||++|++++||. .||. ++||||||+||++ |++++++|+
T Consensus 3 ~~~~~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~~~~~~~~p~~~~rDrfvls~GH~s~~lYa~l~l~G~ 82 (663)
T 3kom_A 3 LSIPREFSNAIRFLSIDATLKAKSGHPGMPMGMADIATVLWTKFLKHNPNNPHWINRDRFVLSNGHGSMLLYSLLHLTGY 82 (663)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTSCEEEECSSSCHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhhheeeCCCCCCCCCCCeEEEeCCcccHHHHHHHHHhCC
Confidence 344688999999999999987 89999999999999999964 3542 5899999999999 999999999
Q ss_pred h---HHHHHHHhcCC-CCCCCCCCCCCccccCcccchhhHHHHHHHHHHHHHcCC----------CCeEEEEEcCCCccc
Q 006251 224 R---SRMNTMRKTSG-LAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGK----------NNNVISVIGDGAMTA 289 (654)
Q Consensus 224 ~---~~l~~lrq~gg-l~G~p~~~es~~~~fg~G~lG~~is~AlGmAlA~kl~g~----------~~~VvaviGDGal~e 289 (654)
+ ++|.+|||.++ ++|||++..++++.+++|++|+++|+|+|||+|.++++. +++|||++|||+++|
T Consensus 83 ~~~~~~l~~~r~~~s~~~ghp~~~~~~gve~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~d~~v~~i~GDG~l~e 162 (663)
T 3kom_A 83 DLSIEDIKNFRQLHSKTPGHPEYGYTPGVETTTGPLGQGVANAVGMALGEKLLSDRYNTPDLKVIDHHTYVFLGDGCLME 162 (663)
T ss_dssp SCCHHHHTTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCSCCCCEEEEECHHHHHS
T ss_pred CCCHHHHHhhccCCCCCCCCCCCCCCCCcccCCcchhhHHHHHHHHHHhHHhhcccccccccccCCCeEEEEECchhhhh
Confidence 4 88999999998 589999988899999999999999999999999997754 789999999999999
Q ss_pred chHHHHHHHHhhcCCC-EEEEEECCCCCcccccccCCCCCchhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHH
Q 006251 290 GQAYEAMNNAGFLDAN-LIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVA 368 (654)
Q Consensus 290 G~~~EAln~A~~~~ln-Li~Il~dN~~~s~pt~~~~g~~~~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~ 368 (654)
|++||||++|+++++| +++|+|||++++ ++..... . ..++
T Consensus 163 G~~~Eal~~A~~~~L~~livi~dnN~~~i------~~~~~~~--~------------------------------~~d~- 203 (663)
T 3kom_A 163 GVSHEACSLAGTLGLNKLVAFWDDNNISI------DGDTKGW--F------------------------------SDNT- 203 (663)
T ss_dssp HHHHHHHHHHHHHTCTTEEEEEEECC-----------CGGGT--C------------------------------CCCH-
T ss_pred chHHHHHHHHHHhCCCeEEEEEECCCccc------ccchhhh--c------------------------------chhH-
Confidence 9999999999999865 999999999743 2221100 0 0122
Q ss_pred HHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHHHHhHhCCCCCCEEEEEEeecCCCCChhhcCcccccccc
Q 006251 369 AKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVV 448 (654)
Q Consensus 369 ~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al~~ak~~~~~gP~lI~v~T~KG~G~~~ae~~~~~~Hg~~ 448 (654)
..+|++|||+++++|||||+++|.++++++++. .++|++|+++|.||+|++++|+. .+|||.+
T Consensus 204 ---------------~~~~~a~G~~~~~~vdG~d~~~l~~al~~A~~~-~~~P~lI~~~T~kg~G~~~~e~~-~~~Hg~~ 266 (663)
T 3kom_A 204 ---------------PERFRAYGWHVIENVDGHDFVAIEKAINEAHSQ-QQKPTLICCKTVIGFGSPEKAGT-ASVHGSP 266 (663)
T ss_dssp ---------------HHHHHHTTCEEEEEEETTCHHHHHHHHHHHHHC-SSSCEEEEEECCTTTTCTTTTTC-SSTTSSC
T ss_pred ---------------HHHHHHCCCeEEEEEcCCCHHHHHHHHHHHHhc-CCCCEEEEEecccccccCCCCCC-ccccCCC
Confidence 234999999999889999999999999999873 37999999999999999998754 6899874
Q ss_pred ------------------CCCCccc-----------ccc----------------------------c------------
Q 006251 449 ------------------KFDPKTG-----------KQF----------------------------K------------ 459 (654)
Q Consensus 449 ------------------~f~~~tg-----------~~~----------------------------~------------ 459 (654)
+|+..++ +.. +
T Consensus 267 l~~e~~~~~~~~l~~~~~pf~~~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~ 346 (663)
T 3kom_A 267 LSDQERASAAKELNWDYQAFEIPQDVYKYWDAREKGQALEANWQGQRNLFKDSPKFDEFERVLSKELPVGLESAINDYIA 346 (663)
T ss_dssp CCHHHHHHHHHHTTCCCCTTCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHTCCCTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCCCCccCChhHHHHHHHHhhcchhhHHHHHHHHHhhcchHHHHHHHHhccCCCcchhhhhhhhhh
Confidence 3443221 000 0
Q ss_pred ---CCCCchhHHHHHHHHHHHHHhhCCcEEEEecCccCCCCh-----hhHH-HhCCCCccccchhHHHHHHHHHHHHhc-
Q 006251 460 ---TKSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGL-----NYFQ-KRFPDRCFDVGIAEQHAVTFAAGLASE- 529 (654)
Q Consensus 460 ---~~~~~~s~~~a~~~aL~~~~~~d~~vvvl~aDlg~s~~l-----~~f~-~~fp~R~id~GIaE~~mvg~AaGlA~~- 529 (654)
.+.+..+++++++++|.++++++|+++++++|+++++++ .+|+ ++||+||||+||+||+|+++|+|||++
T Consensus 347 ~~~~~~~~~a~r~a~~~aL~~~~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~p~R~~d~GIaE~~~v~~a~GlA~~g 426 (663)
T 3kom_A 347 SQLSNPVKVATRKASQMVLEVLCKNMPEMFGGSADLTGSNNTNWSGSVWLNNTQEGANYLSYGVREFGMAAIMNGLSLYG 426 (663)
T ss_dssp HHHHSCCCEEHHHHHHHHHHHHHHHCTTEEEEECCC--CCSCCCTTCCBTTTCSTTCCEEECCSCHHHHHHHHHHHHHHS
T ss_pred hhhccCcchhHHHHHHHHHHHHHhhCCCEEEEecccCCCCCcccccccccccccCCCCeEecCccHHHHHHHHHHHHHcC
Confidence 012345678899999999999999999999999987654 3674 899999999999999999999999999
Q ss_pred CCeeEEeehHHHHHhHHHHHHHhhhcCCCCEEEEEecCCc-cCCCCCCCCChhhHHHHhcCCCCEEEecCCHHHHHHHHH
Q 006251 530 GVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVA 608 (654)
Q Consensus 530 G~~Pi~~tfa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~-~g~dG~tHq~~edla~~r~iPnl~V~~PsD~~E~~~ll~ 608 (654)
|++||++||++|+.++++||+ ++|++++||++++++.|+ +|+||+|||++||+++||+||||+|++|+|++|++++|+
T Consensus 427 G~~P~~~tf~~F~~~~~~~ir-~~a~~~lpvv~~~t~~g~g~G~dG~THq~~ed~a~lr~iPnl~V~~Pad~~e~~~~l~ 505 (663)
T 3kom_A 427 GIKPYGGTFLVFSDYSRNAIR-MSALMKQPVVHVMSHDSIGLGEDGPTHQPIEHVPSLRLIPNLSVWRPADTIETMIAWK 505 (663)
T ss_dssp SCEEEEEEEGGGHHHHHHHHH-HHHHTTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCCSHHHHHHHHH
T ss_pred CCEEEEEehHHHHHHHHHHHH-HHHhcCCCEEEEEeCCccccCCCCCCcCCHHHHHHHhcCCCcEEEeeCCHHHHHHHHH
Confidence 999999999999999999984 589999999999988776 799999999999999999999999999999999999999
Q ss_pred HHHhCCCCcEEEEecCCCCC
Q 006251 609 TAAVIDDRPSCFRFPRGNGI 628 (654)
Q Consensus 609 ~al~~~~~P~~ir~~r~~~~ 628 (654)
+|++.+++|++||++|++.+
T Consensus 506 ~A~~~~~~Pv~ir~~r~~~p 525 (663)
T 3kom_A 506 EAVKSKDTPSVMVLTRQNLM 525 (663)
T ss_dssp HHHHCSSCCEEEECCSSEEC
T ss_pred HHHHhCCCCEEEEccCccCC
Confidence 99876789999999998754
No 8
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=100.00 E-value=3.8e-79 Score=705.31 Aligned_cols=441 Identities=24% Similarity=0.330 Sum_probs=375.1
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHHHHhhc-cCCCCCCCccHHHHHHHHHh---hcC------CCCcEEEecCCchH---H
Q 006251 149 PIHMKNLSTEDLEQLAAELRADIVNSVSK-TGGHLSANLGVVELTLALHR---VFN------TPDDKIIWDVGHQA---Y 215 (654)
Q Consensus 149 p~~~~~l~~~~L~~la~~lR~~il~~v~~-~~GH~gsslg~vel~~aL~~---v~~------~p~Dr~I~s~GH~a---Y 215 (654)
|.+-|+|+.++|+++|++||..+++++.+ ++||+|++||++|++++||+ .|+ .++||||||+||++ |
T Consensus 5 ~~~~~~l~~~~l~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~~~~~p~~p~~~~rDr~vls~GH~~~~lY 84 (675)
T 1itz_A 5 TLQGKAATGELLEKSVNTIRFLAIDAVEKANSGHPGLPMGCAPMGHVLYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQY 84 (675)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTCCEEEESSGGGHHHHH
T ss_pred hhccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCccCccHhHHHHHHHHHHHHhcCCcCCCCCCCCCeEEEcCcchHHHHH
Confidence 66889999999999999999999999988 89999999999999999984 454 25899999999999 9
Q ss_pred HHHHHcCCh----HHHHHHHhcCCC-CCCCCCCCCCccccCcccchhhHHHHHHHHHHHHHcC----------CCCeEEE
Q 006251 216 VHKILTGRR----SRMNTMRKTSGL-AGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILG----------KNNNVIS 280 (654)
Q Consensus 216 ~~~~l~Gr~----~~l~~lrq~ggl-~G~p~~~es~~~~fg~G~lG~~is~AlGmAlA~kl~g----------~~~~Vva 280 (654)
+|++++|+. ++|.+|||.+++ +|||++.+++++.+++|++|+++|+|+|||+|.++++ ++++|||
T Consensus 85 a~l~l~G~~~~~~~~l~~~r~~~~~~~ghp~~~~~~~~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~ 164 (675)
T 1itz_A 85 ALLHLAGYDSVKEEDLKQFRQWGSRTPGHPENFETPGVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYV 164 (675)
T ss_dssp HHHHHHTCTTCCHHHHTTTTSTTCSSCSSCCTTTCTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEE
T ss_pred HHHHHcCCCCCCHHHHHhcccCCCCCCCCCCCCCCCCeeECCccHHhHHHHHHHHHHHhhhhcccccccccCCCCCEEEE
Confidence 999999995 889999999985 9999998899999999999999999999999999876 7899999
Q ss_pred EEcCCCcccchHHHHHHHHhhcCC-CEEEEEECCCCCcccccccCCCCCchhhhhHHHHHhhhchhHHHHHHHHHHHHhh
Q 006251 281 VIGDGAMTAGQAYEAMNNAGFLDA-NLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQ 359 (654)
Q Consensus 281 viGDGal~eG~~~EAln~A~~~~l-nLi~Il~dN~~~s~pt~~~~g~~~~vgals~~l~~~~~~~~~~~~r~~~k~~~~~ 359 (654)
++|||+++||++||||++|+.+++ |+++|+|||++++ +++.... +
T Consensus 165 i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i------~~~~~~~--~-------------------------- 210 (675)
T 1itz_A 165 ILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHISI------DGDTEIA--F-------------------------- 210 (675)
T ss_dssp EECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEET------TEEGGGT--C--------------------------
T ss_pred EECHhHhchhHHHHHHHHHHHhCCCcEEEEEECCCccC------CCChhhh--c--------------------------
Confidence 999999999999999999999985 8999999998643 1111100 0
Q ss_pred cCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCC-CHHHHHHHHHHhHhCCCCCCEEEEEEeecCCCCChhh
Q 006251 360 IGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGH-NVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAE 438 (654)
Q Consensus 360 ~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGh-Di~~L~~al~~ak~~~~~gP~lI~v~T~KG~G~~~ae 438 (654)
..++ ..+|++|||+++++|||| |+++|.++++++++. .++|++||++|.||+|++++|
T Consensus 211 ----~~d~----------------~~~~~a~G~~~~~~vdG~~d~~~l~~al~~a~~~-~~~P~lI~~~T~kg~G~~~~~ 269 (675)
T 1itz_A 211 ----TEDV----------------STRFEALGWHTIWVKNGNTGYDDIRAAIKEAKAV-TDKPTLIKVTTTIGFGSPNKA 269 (675)
T ss_dssp ----CSCH----------------HHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTTCTTTT
T ss_pred ----ChhH----------------HHHHHhCCCEEEEEecCCCCHHHHHHHHHHHHHC-CCCeEEEEEeeecccCccccc
Confidence 0112 235999999999899999 999999999999863 378999999999999999987
Q ss_pred cCcccccccc------------------CCCCccc------------c------------------ccc-----------
Q 006251 439 AAADRMHGVV------------------KFDPKTG------------K------------------QFK----------- 459 (654)
Q Consensus 439 ~~~~~~Hg~~------------------~f~~~tg------------~------------------~~~----------- 459 (654)
+ +.+||+.+ +|+..++ + ...
T Consensus 270 ~-~~~~H~~~~~~e~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 348 (675)
T 1itz_A 270 N-SYSVHGSALGAKEVEATRQNLGWPYDTFFVPEDVKSHWSRHTPEGAALEADWNAKFAEYEKKYADDAATLKSIITGEL 348 (675)
T ss_dssp T-SGGGTSSCCCHHHHHHHHHHHTCCCCTTCCCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCCC
T ss_pred C-cccccCCCCCHHHHHHHHHHcCCCcccccCChhHHHHHHHHHhhhhhhHHHHHHHHHHhhhhChHHHHHHHHHhcccC
Confidence 4 47899973 4544221 0 000
Q ss_pred ------------CCCCchhHHHHHHHHHHHHHhhCCcEEEEecCccCCCCh-----hhHHH-hCCCCccccchhHHHHHH
Q 006251 460 ------------TKSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGL-----NYFQK-RFPDRCFDVGIAEQHAVT 521 (654)
Q Consensus 460 ------------~~~~~~s~~~a~~~aL~~~~~~d~~vvvl~aDlg~s~~l-----~~f~~-~fp~R~id~GIaE~~mvg 521 (654)
...+..+++++++++|.++++++|+++++++|+++++++ ..|++ +||+||||+||+||+|++
T Consensus 349 p~~~~~~~~~~~~~~~~~a~r~a~~~~L~~i~~~~p~v~~~~aDl~~s~~~~~~g~~~f~~~~~~~R~id~gIaE~~~v~ 428 (675)
T 1itz_A 349 PTGWVDALPKYTPESPGDATRNLSQQCLNALANVVPGLIGGSADLASSNMTLLKMFGDFQKDTAEERNVRFGVREHGMGA 428 (675)
T ss_dssp CTTGGGGSCCCCTTSCCBCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTCCBCCTTCTTCCBCCCCSCHHHHHH
T ss_pred CchhhhhhhhhccCCcchHHHHHHHHHHHHHHHhCCCEEEEeccccccccccccccccccccCCCCCeEeecccHHHHHH
Confidence 112456789999999999999999999999999877654 34887 999999999999999999
Q ss_pred HHHHHHhcC--CeeEEeehHHHHHhHHHHHHHhhhcCCCCEEEEEecCCc-cCCCCCCCCChhhHHHHhcCCCCEEEecC
Q 006251 522 FAAGLASEG--VKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPS 598 (654)
Q Consensus 522 ~AaGlA~~G--~~Pi~~tfa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~-~g~dG~tHq~~edla~~r~iPnl~V~~Ps 598 (654)
+|+|||++| ++||+++|++|+.++++||+ ++|++++||+++++++|+ +|+||+|||++||+++||+||||+|++|+
T Consensus 429 ~a~GlA~~G~~~~P~~~t~~~F~~~~~~~ir-~~a~~~lpvv~~~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V~~Pa 507 (675)
T 1itz_A 429 ICNGIALHSPGFVPYCATFFVFTDYMRGAMR-ISALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLVSFRAMPNILMLRPA 507 (675)
T ss_dssp HHHHHHTTCTTCEEEEEEEGGGHHHHHHHHH-HHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHSSSSCEEECCC
T ss_pred HHHHHHhcCCCCEEEEEEHHHHHHHHHHHHH-HHHhcCCCEEEEEECCccccCCCCCCcCcHHHHHHhccCCCeEEEECC
Confidence 999999999 99999999999999999975 589999999999988776 68999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCcEEEEecCCCCCCccCCCCCCCC-CcccCceEEecc
Q 006251 599 DEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGT-PLETSLDSWPMS 651 (654)
Q Consensus 599 D~~E~~~ll~~al~~~~~P~~ir~~r~~~~~~~~p~~~~~~-~~~iGKa~vi~~ 651 (654)
|++|++++|++|+...++|++||++|++.+. ++. +.+ .+++| +.|+++
T Consensus 508 d~~e~~~~l~~a~~~~~~Pv~i~~~r~~~p~--~~~--~~~~~~~~G-a~vl~~ 556 (675)
T 1itz_A 508 DGNETAGAYKVAVLNRKRPSILALSRQKLPH--LPG--TSIEGVEKG-GYTISD 556 (675)
T ss_dssp SHHHHHHHHHHHHHCTTSCEEEEECSSCBCC--CTT--CCHHHHTTS-SEEEEE
T ss_pred CHHHHHHHHHHHHHhCCCcEEEEecCCCCCC--CCC--ccccccccC-CEEEec
Confidence 9999999999998755899999999987543 222 233 58889 677765
No 9
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=100.00 E-value=1.4e-79 Score=708.88 Aligned_cols=429 Identities=23% Similarity=0.339 Sum_probs=346.0
Q ss_pred HHHHHHHHHHHHHHHhhc-cCCCCCCCccHHHHHHHHHh---hcCC------CCcEEEecCCchH---HHHHHHcCCh--
Q 006251 160 LEQLAAELRADIVNSVSK-TGGHLSANLGVVELTLALHR---VFNT------PDDKIIWDVGHQA---YVHKILTGRR-- 224 (654)
Q Consensus 160 L~~la~~lR~~il~~v~~-~~GH~gsslg~vel~~aL~~---v~~~------p~Dr~I~s~GH~a---Y~~~~l~Gr~-- 224 (654)
.+++|++||..+++++.+ ++||+|++||++|++++||. .||. ++||||||+||++ |++++++|++
T Consensus 45 ~~~~a~~iR~~~i~~v~~a~~GH~g~~l~~aei~~~L~~~~~~~~~~~p~~~~rDrfvls~GH~s~~lYa~l~l~G~~~~ 124 (711)
T 3uk1_A 45 TTLMANAIRALAMDAVQQANSGHPGMPMGMAEIGVALWSRHLKHNPTNPHWADRDRFVLSNGHGSMLLYSLLHLTGYDLP 124 (711)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSCCHHHHHTHHHHHHHHHHTCCCCTTCTTCTTCCEEEECSGGGHHHHHHHHHHHTCSCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHHhhhEeeCCCCCCCCCCCeEEEeCCcccHHHHHHHHHhCCCCC
Confidence 466999999999999987 89999999999999999974 3542 4899999999999 9999999994
Q ss_pred -HHHHHHHhcCC-CCCCCCCCCCCccccCcccchhhHHHHHHHHHHHHHcCC----------CCeEEEEEcCCCcccchH
Q 006251 225 -SRMNTMRKTSG-LAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGK----------NNNVISVIGDGAMTAGQA 292 (654)
Q Consensus 225 -~~l~~lrq~gg-l~G~p~~~es~~~~fg~G~lG~~is~AlGmAlA~kl~g~----------~~~VvaviGDGal~eG~~ 292 (654)
++|.+|||.++ ++|||++...++.++++|++|+++|+|+|||+|.++++. +++|||++|||+++||++
T Consensus 125 ~~~l~~~r~~~s~~~ghp~~~~~~gve~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~vv~i~GDG~l~eG~~ 204 (711)
T 3uk1_A 125 IEELKNFRQLHSKTPGHPEYGITPGVETTTGPLGQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGCLMEGIS 204 (711)
T ss_dssp HHHHHTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHH
T ss_pred HHHHHhhccccCCCCCCCCCCCCCCcccCccchhhHHHHHHHHHHHHHhhcccccccccccCCCeEEEEECCcchhhccH
Confidence 88999999988 689999877889999999999999999999999997753 789999999999999999
Q ss_pred HHHHHHHhhcCCC-EEEEEECCCCCcccccccCCCCCchhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHH
Q 006251 293 YEAMNNAGFLDAN-LIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKV 371 (654)
Q Consensus 293 ~EAln~A~~~~ln-Li~Il~dN~~~s~pt~~~~g~~~~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~ 371 (654)
||||++|+++++| +++|+|||++++ ++... .. ...++
T Consensus 205 ~Eal~~A~~~~L~~livI~dnN~~~i------~~~~~---~~-----------------------------~~~d~---- 242 (711)
T 3uk1_A 205 HEACSLAGTLKLNKLIALYDDNGISI------DGDVV---NW-----------------------------FHDDT---- 242 (711)
T ss_dssp HHHHHHHHHTTCTTEEEEEEECSEET------TEEGG---GT-----------------------------CCCCH----
T ss_pred HHHHHHHHHhCCCcEEEEEECCCccc------ccchh---hh-----------------------------cCCCH----
Confidence 9999999999875 999999998643 11111 00 00112
Q ss_pred HHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHHHHhHhCCCCCCEEEEEEeecCCCCChhhcCcccccccc---
Q 006251 372 DEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVV--- 448 (654)
Q Consensus 372 ~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al~~ak~~~~~gP~lI~v~T~KG~G~~~ae~~~~~~Hg~~--- 448 (654)
..+|++|||+++++|||||+++|.++++++++ .++|++|+|+|+||+|++++|+ +.+|||.+
T Consensus 243 ------------~~~~~a~G~~~~~~vdG~d~~~l~~Al~~A~~--~~~P~lI~v~T~kG~G~~~~e~-~~~~Hg~~l~~ 307 (711)
T 3uk1_A 243 ------------PKRFEAYGWNVIPNVNGHDVDAIDAAIAKAKR--SDKPSLICCKTRIGNGAATKAG-GHDVHGAPLGA 307 (711)
T ss_dssp ------------HHHHHHTTCEEEEEEETTCHHHHHHHHHHHTT--CSSCEEEEEEC---------------------CH
T ss_pred ------------HHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHh--CCCCEEEEEccccccCCCCCCC-cccccCCCCCH
Confidence 23499999999966999999999999999987 3799999999999999987764 57899974
Q ss_pred ---------------CCCCcc-----------ccccc-----------------------------C-------------
Q 006251 449 ---------------KFDPKT-----------GKQFK-----------------------------T------------- 460 (654)
Q Consensus 449 ---------------~f~~~t-----------g~~~~-----------------------------~------------- 460 (654)
+|+..+ |+... +
T Consensus 308 e~~~~~~~~l~~~~~pF~~~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~~~p~~a~~~~~~~~~~~p~~~~~~~~~~~~~ 387 (711)
T 3uk1_A 308 DEIAKTREALGWTWAPFVIPQEVYAAWDAKEAGKRSEDDWNAAFAQYRAKYPAEAAEFERRMAGTLPADWAAKAAAIVAG 387 (711)
T ss_dssp HHHHHHHHHHTCCCCTTCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCccCChHHHHHHHHHhccchhHHHHHHHHHHHHhhChhhHHHHHHhhccCCCchHHHHhhHhhhh
Confidence 354322 21000 0
Q ss_pred ---CCCchhHHHHHHHHHHHHHhhCCcEEEEecCccCCCCh-----hhHHHh---CC---CCccccchhHHHHHHHHHHH
Q 006251 461 ---KSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGL-----NYFQKR---FP---DRCFDVGIAEQHAVTFAAGL 526 (654)
Q Consensus 461 ---~~~~~s~~~a~~~aL~~~~~~d~~vvvl~aDlg~s~~l-----~~f~~~---fp---~R~id~GIaE~~mvg~AaGl 526 (654)
..+..+++++++++|.++++++|+++++++|+++++++ ..|+++ || +||||+||+||+|+++|+||
T Consensus 388 ~~~~~~~~atR~A~~~~L~~l~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~~~p~~~~R~~d~GIaE~~mv~~AaGl 467 (711)
T 3uk1_A 388 ANERGETVATRKASQQTIEGLAAVLPELLGGSADLTGSNLTNWKASKAVRANADGPGVQWGNHINYGVREFGMSAAINGL 467 (711)
T ss_dssp HHHHCCCEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTCCBCEECSSSSSEECCSEEECCSCHHHHHHHHHHH
T ss_pred hhccccchhHHHHHHHHHHHHHhhCCCEEEEeccccCcCCcccccchhhhhhhccCCCCCCcEEEeCccHHHHHHHHHHH
Confidence 02234567888899999999999999999999876554 478889 99 99999999999999999999
Q ss_pred Hhc-CCeeEEeehHHHHHhHHHHHHHhhhcCCCCEEEEEecCCc-cCCCCCCCCChhhHHHHhcCCCCEEEecCCHHHHH
Q 006251 527 ASE-GVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELM 604 (654)
Q Consensus 527 A~~-G~~Pi~~tfa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~-~g~dG~tHq~~edla~~r~iPnl~V~~PsD~~E~~ 604 (654)
|++ |++||+++|++|++|+++||+ ++|++++||+++++++|+ +|+||+|||++||+++||+||||+|++|+|++|++
T Consensus 468 A~~~G~~Pv~~~f~~F~~~~~~~ir-~~a~~~lpv~~v~thdg~gvG~dG~THq~~ed~a~lr~iPnl~V~~Pad~~E~~ 546 (711)
T 3uk1_A 468 VLHGGYKPFGGTFLTFSDYSRNALR-VAALMKVPSIFVFTHDSIGLGEDGPTHQSVEHVASLRLIPNLDVWRPADTVETA 546 (711)
T ss_dssp HHHSSCEEEEEEEGGGHHHHHHHHH-HHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCSSHHHHH
T ss_pred HHcCCCEEEEEEhHHHHHHHHHHHH-HhhhcCCCEEEEEECCCcCcCCCCCccCChhHHHHHhcCCCCEEEecCCHHHHH
Confidence 995 999999999999999999985 589999999999998887 79999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCcEEEEecCCCCCCccCCCCCC-CCCcccCceEEec
Q 006251 605 HMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNK-GTPLETSLDSWPM 650 (654)
Q Consensus 605 ~ll~~al~~~~~P~~ir~~r~~~~~~~~p~~~~-~~~~~iGKa~vi~ 650 (654)
++|++|++ +++|+|||++|++.+. ++...+ .+.+++|+. |++
T Consensus 547 ~~l~~Ai~-~~~Pv~ir~~r~~~p~--~~~~~~~~~~i~~G~~-vl~ 589 (711)
T 3uk1_A 547 VAWTYAVA-HQHPSCLIFSRQNLAF--NARTDAQLANVEKGGY-VLR 589 (711)
T ss_dssp HHHHHHHH-SSSCEEEECCSSEECC--CCCCHHHHHHGGGSSE-EEE
T ss_pred HHHHHHHh-cCCCEEEEeeCCCCCC--CCCccccccccCCCeE-EEE
Confidence 99999986 7899999999987543 221100 146777874 554
No 10
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=100.00 E-value=1.4e-77 Score=692.71 Aligned_cols=428 Identities=23% Similarity=0.320 Sum_probs=365.6
Q ss_pred HHHH-HHHHHHHHHHHHhhc-cCCCCCCCccHHHHHHHHHh--hcCC------CCcEEEecCCchH---HHHHHHcCC--
Q 006251 159 DLEQ-LAAELRADIVNSVSK-TGGHLSANLGVVELTLALHR--VFNT------PDDKIIWDVGHQA---YVHKILTGR-- 223 (654)
Q Consensus 159 ~L~~-la~~lR~~il~~v~~-~~GH~gsslg~vel~~aL~~--v~~~------p~Dr~I~s~GH~a---Y~~~~l~Gr-- 223 (654)
+|++ +|++||..+++++++ ++||+|++||++|++++||+ .||. ++||||||+||++ |+|++++|+
T Consensus 6 ~l~~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~~~~~~~p~~~~rDr~v~s~GH~~~~lYa~~~l~G~~~ 85 (680)
T 1gpu_A 6 DIDKLAVSTIRILAVDTVSKANSGHPGAPLGMAPAAHVLWSQMRMNPTNPDWINRDRFVLSNGHAVALLYSMLHLTGYDL 85 (680)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHTCCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCccCCchhHHHHHHHHHHhCCCCccCCCCCCCCEEEEecchHHHHHHHHHHHhCCCC
Confidence 6888 999999999999988 89999999999999999997 5652 4899999999999 999999999
Q ss_pred -hHHHHHHHhcCC-CCCCCCCCCCCccccCcccchhhHHHHHHHHHHHHHcC----------CCCeEEEEEcCCCcccch
Q 006251 224 -RSRMNTMRKTSG-LAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILG----------KNNNVISVIGDGAMTAGQ 291 (654)
Q Consensus 224 -~~~l~~lrq~gg-l~G~p~~~es~~~~fg~G~lG~~is~AlGmAlA~kl~g----------~~~~VvaviGDGal~eG~ 291 (654)
.++|.+|||+|+ ++|||++ +++++.+++|++|+++|+|+|+|+|.++++ .+++|||++|||+++||+
T Consensus 86 ~~~~l~~~r~~g~~~~ghp~~-~~~g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~vv~i~GDG~~~eG~ 164 (680)
T 1gpu_A 86 SIEDLKQFRQLGSRTPGHPEF-ELPGVEVTTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGI 164 (680)
T ss_dssp CHHHHTTTTCTTCSCCSSCCT-TSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHH
T ss_pred CHHHHHhhcccCCCCCCCCCc-cCCCeeeccccccchHHHHHHHHHHHHHhccccccCccCCCCCeEEEEECCCccchhh
Confidence 789999999998 4999998 899999999999999999999999999765 488999999999999999
Q ss_pred HHHHHHHHhhcCCC-EEEEEECCCCCc-ccccccCCCCCchhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHH
Q 006251 292 AYEAMNNAGFLDAN-LIVVLNDNKQVS-LPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAA 369 (654)
Q Consensus 292 ~~EAln~A~~~~ln-Li~Il~dN~~~s-~pt~~~~g~~~~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~ 369 (654)
+|||||+|+.+++| +++|+|||++++ .++... + ..++
T Consensus 165 ~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~---------~------------------------------~~d~-- 203 (680)
T 1gpu_A 165 SSEASSLAGHLKLGNLIAIYDDNKITIDGATSIS---------F------------------------------DEDV-- 203 (680)
T ss_dssp HHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGT---------C------------------------------CCCH--
T ss_pred HHHHHHHHHHhCCCcEEEEEECCCceEecccccc---------c------------------------------CccH--
Confidence 99999999999865 999999998643 111100 0 0112
Q ss_pred HHHHHhhhccCCChhhhhhhcCCeEEeecCCC-CHHHHHHHHHHhHhCCCCCCEEEEEEeecCCCCChhhcCcccccccc
Q 006251 370 KVDEYARGLISASGSTFFEELGLYYIGPVDGH-NVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVV 448 (654)
Q Consensus 370 k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGh-Di~~L~~al~~ak~~~~~gP~lI~v~T~KG~G~~~ae~~~~~~Hg~~ 448 (654)
..+|++|||+++++|||| |+++|.++++++++. .++|++||++|.||+|++ .+ +..+||+..
T Consensus 204 --------------~~~~~a~G~~~~~~vdG~~d~~~l~~al~~A~~~-~~~P~lI~~~T~kg~G~~-~~-~~~~~H~~~ 266 (680)
T 1gpu_A 204 --------------AKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKLS-KDKPTLIKMTTTIGYGSL-HA-GSHSVHGAP 266 (680)
T ss_dssp --------------HHHHHHHTCEEEEESCTTTCHHHHHHHHHHHHHC-TTSCEEEEEECCTTTTST-TT-TSGGGSSSC
T ss_pred --------------HHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHC-CCCCEEEEEEeecccccc-cC-CCCccCCCC
Confidence 234999999999899999 999999999999873 378999999999999999 44 456899875
Q ss_pred -------------------CCCCcccc-------------c--------c------------------c-----------
Q 006251 449 -------------------KFDPKTGK-------------Q--------F------------------K----------- 459 (654)
Q Consensus 449 -------------------~f~~~tg~-------------~--------~------------------~----------- 459 (654)
+|+..++. . + .
T Consensus 267 ~~~ee~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~p~~~~~~~ 346 (680)
T 1gpu_A 267 LKADDVKQLKSKFGFNPDKSFVVPQEVYDHYQKTILKPGVEANNKWNKLFSEYQKKFPELGAELARRLSGQLPANWESKL 346 (680)
T ss_dssp CCHHHHHHHHHHTTCCTTCCSCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCCTTGGGGS
T ss_pred CCHHHHHHHHHHcCCCcCCCccCCHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhChHHHHHHHHHhcccCCchhhhhc
Confidence 35432210 0 0 0
Q ss_pred ----CCCCchhHHHHHHHHHHHHHhhCCcEEEEecCccCCCCh-----hhHHH------hCCCCccccchhHHHHHHHHH
Q 006251 460 ----TKSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGL-----NYFQK------RFPDRCFDVGIAEQHAVTFAA 524 (654)
Q Consensus 460 ----~~~~~~s~~~a~~~aL~~~~~~d~~vvvl~aDlg~s~~l-----~~f~~------~fp~R~id~GIaE~~mvg~Aa 524 (654)
...+..+++++++++|.++++++|+++++++|++.++++ ..|++ +||+||||+||+||+|+++|+
T Consensus 347 ~~~~~~~~~~a~r~a~~~~L~~~~~~~p~v~~~~aDl~~s~~~~~~g~~~f~~~~~~~~~~p~R~~d~gIaE~~~vg~a~ 426 (680)
T 1gpu_A 347 PTYTAKDSAVATRKLSETVLEDVYNQLPELIGGSADLTPSNLTRWKEALDFQPPSSGSGNYSGRYIRYGIREHAMGAIMN 426 (680)
T ss_dssp CCCCTTSCCBCHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEECCTTTSSEETTCCEEECCSCHHHHHHHHH
T ss_pred hhhccCCcchHHHHHHHHHHHHHHhhCCCEEEEecccccccccccccccccccccccccCCCCceecCCccHHHHHHHHH
Confidence 013456789999999999999999999999999877654 46887 999999999999999999999
Q ss_pred HHHhcC-Ce-eEEeehHHHHHhHHHHHHHhhhcCCCCEEEEEecCCc-cCCCCCCCCChhhHHHHhcCCCCEEEecCCHH
Q 006251 525 GLASEG-VK-PFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEA 601 (654)
Q Consensus 525 GlA~~G-~~-Pi~~tfa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~-~g~dG~tHq~~edla~~r~iPnl~V~~PsD~~ 601 (654)
|||++| ++ ||+++|++|+.++++||+. +|++++||+++++++|+ +|+||+|||++||+++||+||||+|++|+|++
T Consensus 427 GlA~~Gg~~~P~~~~f~~F~~~~~~air~-~a~~~lpvv~v~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~ 505 (680)
T 1gpu_A 427 GISAFGANYKPYGGTFLNFVSYAAGAVRL-SALSGHPVIWVATHDSIGVGEDGPTHQPIETLAHFRSLPNIQVWRPADGN 505 (680)
T ss_dssp HHHHHCTTCEEEEEEEHHHHGGGHHHHHH-HHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSSSCEEECCCSHH
T ss_pred HHHhcCCCceEEEeehHHHHHHHHHHHHH-HHhcCCCEEEEEeCCccccCCCCCccCCHHHHHHhcCCCCCEEEecCCHH
Confidence 999998 99 9999999999999999755 89999999999988776 68999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCcEEEEecCCCCCCccCCCCCCCCC-cccCceEEecc
Q 006251 602 ELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTP-LETSLDSWPMS 651 (654)
Q Consensus 602 E~~~ll~~al~~~~~P~~ir~~r~~~~~~~~p~~~~~~~-~~iGKa~vi~~ 651 (654)
|++++|++|++..++|++||++|++.+. ++. +++. +++| +.|+++
T Consensus 506 e~~~~l~~A~~~~~~Pv~i~~~r~~~~~--~~~--~~~~~~~~G-~~vl~~ 551 (680)
T 1gpu_A 506 EVSAAYKNSLESKHTPSIIALSRQNLPQ--LEG--SSIESASKG-GYVLQD 551 (680)
T ss_dssp HHHHHHHHHHHCSSCCEEEECCSSCBCC--CTT--CCHHHHTTS-CEEEEC
T ss_pred HHHHHHHHHHHhCCCcEEEEecCCCCCC--CCC--cchhhccCC-CEEEec
Confidence 9999999998755899999999987543 222 2234 7888 477764
No 11
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=100.00 E-value=9.6e-77 Score=684.95 Aligned_cols=429 Identities=21% Similarity=0.290 Sum_probs=365.0
Q ss_pred HHHHHHHHHHHHHHHhhc-cCCCCCCCccHHHHHHHHHh---hcCC------CCcEEEecCCchH---HHHHHHcCC---
Q 006251 160 LEQLAAELRADIVNSVSK-TGGHLSANLGVVELTLALHR---VFNT------PDDKIIWDVGHQA---YVHKILTGR--- 223 (654)
Q Consensus 160 L~~la~~lR~~il~~v~~-~~GH~gsslg~vel~~aL~~---v~~~------p~Dr~I~s~GH~a---Y~~~~l~Gr--- 223 (654)
|+++|++||..+++++.+ ++||+|++||++|++++||+ .|+. ++||||||+||++ |+|++|+|+
T Consensus 4 ~~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~~~~lYa~~~l~G~~~~ 83 (669)
T 2r8o_A 4 RKELANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLKHNPQNPSWADRDRFVLSNGHGSMLIYSLLHLTGYDLP 83 (669)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHHTCSCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccCCchhHHHHHHHHHHHhhcCCcCCCCCCCCCeEEEeCccHHHHHHHHHHHcCCCCC
Confidence 788999999999999987 89999999999999999984 3442 4899999999999 999999999
Q ss_pred hHHHHHHHhcCCC-CCCCCCCCCCccccCcccchhhHHHHHHHHHHHHHcC----------CCCeEEEEEcCCCcccchH
Q 006251 224 RSRMNTMRKTSGL-AGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILG----------KNNNVISVIGDGAMTAGQA 292 (654)
Q Consensus 224 ~~~l~~lrq~ggl-~G~p~~~es~~~~fg~G~lG~~is~AlGmAlA~kl~g----------~~~~VvaviGDGal~eG~~ 292 (654)
.++|.+|||.+++ +|||++.+++++.+++|++|+++|+|+|||+|.++++ .+++|||++|||+++||++
T Consensus 84 ~~~l~~~r~~~~~~~ghp~~~~~~g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~~~GDG~~~eG~~ 163 (669)
T 2r8o_A 84 MEELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGIS 163 (669)
T ss_dssp HHHHTTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHH
T ss_pred HHHHHHhhcCCCCCCCCCCccCCCCcccccccccchHHHHHHHHHHHHHhccccccCccCCcCCeEEEEECHhHhcchHH
Confidence 7899999999985 8999988899999999999999999999999998764 4889999999999999999
Q ss_pred HHHHHHHhhcCCC-EEEEEECCCCCc-ccccccCCCCCchhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHH
Q 006251 293 YEAMNNAGFLDAN-LIVVLNDNKQVS-LPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAK 370 (654)
Q Consensus 293 ~EAln~A~~~~ln-Li~Il~dN~~~s-~pt~~~~g~~~~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k 370 (654)
||||++|+.+++| +++|+|||++.+ .++.. .+ ..++
T Consensus 164 ~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~---------~~------------------------------~~d~--- 201 (669)
T 2r8o_A 164 HEVCSLAGTLKLGKLIAFYDDNGISIDGHVEG---------WF------------------------------TDDT--- 201 (669)
T ss_dssp HHHHHHHHHTTCTTEEEEEEECSEETTEEGGG---------TC------------------------------CCCH---
T ss_pred HHHHHHHHHcCCCcEEEEEECCCcEecccccc---------cc------------------------------CccH---
Confidence 9999999999865 999999998643 11110 00 0112
Q ss_pred HHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHHHHhHhCCCCCCEEEEEEeecCCCCChhhcCcccccccc--
Q 006251 371 VDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVV-- 448 (654)
Q Consensus 371 ~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al~~ak~~~~~gP~lI~v~T~KG~G~~~ae~~~~~~Hg~~-- 448 (654)
..+|++|||+++++|||||+++|.++++++++. .++|++|+++|.||+|++++++ ..+||+.+
T Consensus 202 -------------~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~~-~~~P~lI~~~T~kg~G~~~~~~-~~~~H~~~~~ 266 (669)
T 2r8o_A 202 -------------AMRFEAYGWHVIRDIDGHDAASIKRAVEEARAV-TDKPSLLMCKTIIGFGSPNKAG-THDSHGAPLG 266 (669)
T ss_dssp -------------HHHHHHTTCEEEEEEETTCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTTCTTTTT-SGGGTSSCCC
T ss_pred -------------HHHHHHCCCeEEeEECCCCHHHHHHHHHHHHhc-CCCCEEEEEEeEeccCcCCcCC-CCcccCCCCC
Confidence 234999999998889999999999999999873 3789999999999999998664 46899863
Q ss_pred ----------------CCCCccc-----------c------------------------------ccc------------
Q 006251 449 ----------------KFDPKTG-----------K------------------------------QFK------------ 459 (654)
Q Consensus 449 ----------------~f~~~tg-----------~------------------------------~~~------------ 459 (654)
+|+..++ + .+.
T Consensus 267 ~ee~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~ 346 (669)
T 2r8o_A 267 DAEIALTREQLGWKYAPFEIPSEIYAQWDAKEAGQAKESAWNEKFAAYAKAYPQEAAEFTRRMKGEMPSDFDAKAKEFIA 346 (669)
T ss_dssp HHHHHHHHHHHTCCCCTTCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhChHHHHHHHHHhcccCChhhhhhhHHHhh
Confidence 3443221 0 000
Q ss_pred ---CCCCchhHHHHHHHHHHHHHhhCCcEEEEecCccCCCCh-----hhHHHhCCCCccccchhHHHHHHHHHHHHhc-C
Q 006251 460 ---TKSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGL-----NYFQKRFPDRCFDVGIAEQHAVTFAAGLASE-G 530 (654)
Q Consensus 460 ---~~~~~~s~~~a~~~aL~~~~~~d~~vvvl~aDlg~s~~l-----~~f~~~fp~R~id~GIaE~~mvg~AaGlA~~-G 530 (654)
...++.+++++++++|.++++++|+++++++|+++++++ ..|+++||+||||+||+||+|+++|+|||++ |
T Consensus 347 ~~~~~~~~~~~r~a~~~~L~~l~~~~p~v~~~~aDl~~s~~~~~~~~~~f~~~~p~R~id~GIaE~~~v~~a~GlA~~gG 426 (669)
T 2r8o_A 347 KLQANPAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDAAGNYIHYGVREFGMTAIANGISLHGG 426 (669)
T ss_dssp HHHHSCCCEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCCCTTCCBTTTCTTCSEEECCSCHHHHHHHHHHHHHHSS
T ss_pred hhcCCCccHHHHHHHHHHHHHHHhhCCCeEEecCcccccccccccccccccccCCCCeeecchhHHHHHHHHHHHHHcCC
Confidence 112345788899999999999999999999999877654 4799999999999999999999999999999 8
Q ss_pred CeeEEeehHHHHHhHHHHHHHhhhcCCCCEEEEEecCCc-cCCCCCCCCChhhHHHHhcCCCCEEEecCCHHHHHHHHHH
Q 006251 531 VKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVAT 609 (654)
Q Consensus 531 ~~Pi~~tfa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~-~g~dG~tHq~~edla~~r~iPnl~V~~PsD~~E~~~ll~~ 609 (654)
++||+.+|++|+.++++||++ +|++++||++++++.|+ +|+||+|||++||+++||++|||+|++|+|++|++++|++
T Consensus 427 ~~P~~~tf~~F~~~~~~~ir~-~a~~~lpvv~~~t~~g~~~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~E~~~~l~~ 505 (669)
T 2r8o_A 427 FLPYTSTFLMFVEYARNAVRM-AALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVESAVAWKY 505 (669)
T ss_dssp CEEEEEEEGGGGGTTHHHHHH-HHHTTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCSSHHHHHHHHHH
T ss_pred CeEEEeehHHHHHHHHHHHHH-HHhcCCCEEEEEeCCCcCcCCCCCccCCHHHHHHhcCCCCCEEEecCCHHHHHHHHHH
Confidence 999999999999999999765 89999999999988776 6899999999999999999999999999999999999999
Q ss_pred HHhCCCCcEEEEecCCCCCCccCCCCCCCC---CcccCceEEecc
Q 006251 610 AAVIDDRPSCFRFPRGNGIGAVLPPNNKGT---PLETSLDSWPMS 651 (654)
Q Consensus 610 al~~~~~P~~ir~~r~~~~~~~~p~~~~~~---~~~iGKa~vi~~ 651 (654)
|++..++|++||++|++.+. ++. +.+ .+++|+ .|+++
T Consensus 506 a~~~~~~Pv~i~~~r~~~~~--~~~--~~~~~~~~~~G~-~vl~~ 545 (669)
T 2r8o_A 506 GVERQDGPTALILSRQNLAQ--QER--TEEQLANIARGG-YVLKD 545 (669)
T ss_dssp HHHCSSSCEEEECCSSEECC--CCC--CHHHHHHGGGSC-EEEEC
T ss_pred HHHhCCCcEEEEeCCCCCCC--CCC--ccchhhhccCCC-EEEec
Confidence 99755899999999987542 322 111 277884 67664
No 12
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=100.00 E-value=1.4e-76 Score=681.61 Aligned_cols=427 Identities=22% Similarity=0.295 Sum_probs=363.1
Q ss_pred HHHHHHHHHHHHHHhhc-cCCCCCCCccHHHHHHHHHh---hcC------CCCcEEEecCCchH---HHHHHHcCC---h
Q 006251 161 EQLAAELRADIVNSVSK-TGGHLSANLGVVELTLALHR---VFN------TPDDKIIWDVGHQA---YVHKILTGR---R 224 (654)
Q Consensus 161 ~~la~~lR~~il~~v~~-~~GH~gsslg~vel~~aL~~---v~~------~p~Dr~I~s~GH~a---Y~~~~l~Gr---~ 224 (654)
+++|++||..+++++.+ ++||+|++||++|++++||. .|+ .++||||||+||++ |+|++++|+ .
T Consensus 9 ~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~~~~~p~~p~~~~rDr~vls~GH~~~~lYa~l~l~G~~~~~ 88 (651)
T 2e6k_A 9 TLSVNAIRFLAIDAVEKARSGHPGMPMGMAPLAYLLFREVMRHNPLDPDWPDRDRFVLSAGHGSMLLYAVLHLTGYDLPL 88 (651)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHTTCCCCTTCTTCTTSCEEEESSGGGHHHHHHHHHHTTCSCCH
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCcchhHHHHHHHHHHHHhcCCccCCCCCCCCeEEEeCcchhHHHHHHHHHhCCCCCH
Confidence 35899999999999988 89999999999999999984 354 25899999999999 999999999 7
Q ss_pred HHHHHHHhcCCC-CCCCCCCCCCccccCcccchhhHHHHHHHHHHHHHcC----------CCCeEEEEEcCCCcccchHH
Q 006251 225 SRMNTMRKTSGL-AGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILG----------KNNNVISVIGDGAMTAGQAY 293 (654)
Q Consensus 225 ~~l~~lrq~ggl-~G~p~~~es~~~~fg~G~lG~~is~AlGmAlA~kl~g----------~~~~VvaviGDGal~eG~~~ 293 (654)
+.|.+|||++++ +|||++.+++++.+++|++|+++|+|+|+|+|.++++ .+++|||++|||++++|++|
T Consensus 89 ~~l~~~r~~~~~~~ghp~~~~~~g~~~~~G~lG~gl~~AvG~A~A~~~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~ 168 (651)
T 2e6k_A 89 EELKSFRQWGSKTPGHPERGHTPGVEVTTGPLGQGISTAVGLALAERKLAAEFNRPGHVVVDHYTYVLASDGDLMEGVSG 168 (651)
T ss_dssp HHHTTTTSTTCSCCSSCCBTTBTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHH
T ss_pred HHHHHhhccCCCCCCCCCCCCCCCeeeccccccchHHHHHHHHHHHHhhcccccccccCCCCCEEEEEEChhhhchhHHH
Confidence 899999999985 8999998899999999999999999999999999776 68999999999999999999
Q ss_pred HHHHHHhhcCCC-EEEEEECCCCCc-ccccccCCCCCchhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHH
Q 006251 294 EAMNNAGFLDAN-LIVVLNDNKQVS-LPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKV 371 (654)
Q Consensus 294 EAln~A~~~~ln-Li~Il~dN~~~s-~pt~~~~g~~~~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~ 371 (654)
|||++|+.+++| +++|+|||++.+ .++... + ..++
T Consensus 169 Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~---------~------------------------------~~d~---- 205 (651)
T 2e6k_A 169 EAASLAGHWGLSKLIVFWDDNRISIDGPTDLA---------F------------------------------TEDV---- 205 (651)
T ss_dssp HHHHHHHHTTCTTEEEEEEECCEETTEEGGGT---------C------------------------------CSCH----
T ss_pred HHHHHHHHcCCCeEEEEEECCCcccccccccc---------c------------------------------CccH----
Confidence 999999999865 999999998643 111100 0 0112
Q ss_pred HHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHHHHhHhCCCCCCEEEEEEeecCCCCChhhcCcccccccc---
Q 006251 372 DEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVV--- 448 (654)
Q Consensus 372 ~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al~~ak~~~~~gP~lI~v~T~KG~G~~~ae~~~~~~Hg~~--- 448 (654)
..+|++|||+++++|||||+++|.++++++++ .++|++||++|.||+|++ ++ ++.+||+.+
T Consensus 206 ------------~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~--~~~P~lI~~~t~kg~G~~-~~-~~~~~H~~~~~~ 269 (651)
T 2e6k_A 206 ------------LARYRAYGWQTLRVEDVNDLEALRKAIKLAKL--DERPTLIAVRSHIGFGSP-KQ-DSAKAHGEPLGP 269 (651)
T ss_dssp ------------HHHHHHTTCEEEEESCTTCHHHHHHHHHHHHH--SSSCEEEEEECCTTTTST-TT-TSGGGTSSCCHH
T ss_pred ------------HHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHH--CCCCEEEEEEeEeccccc-cc-ccccccccCCCH
Confidence 23599999999989999999999999999987 379999999999999999 44 557899876
Q ss_pred ---------------CCCCccccc-------------------c-----------c-------CC-----------CCch
Q 006251 449 ---------------KFDPKTGKQ-------------------F-----------K-------TK-----------SPTL 465 (654)
Q Consensus 449 ---------------~f~~~tg~~-------------------~-----------~-------~~-----------~~~~ 465 (654)
+|+..++.. + + .+ .++.
T Consensus 270 ~e~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 349 (651)
T 2e6k_A 270 EAVEATRRNLGWPYPPFVVPEEVYRHMDMREKGRAWQEAWEKALEAYARAYPDLHQELMRRLRGELPPLPEEPPSFDKPI 349 (651)
T ss_dssp HHHHHHHHHHTCCCCTTCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCCCCCCSCCCCCSCB
T ss_pred HHHHHHHHHcCCCcccccCChHHHHHHHHhhhchhhHHHHHHHHHHhhhhChHHHHHHHHHhcCcCCchhhhccccCccH
Confidence 455332100 0 0 01 1256
Q ss_pred hHHHHHHHHHHHHHhhCCcEEEEecCccCCCCh-----hhHHH-hCCCCccccchhHHHHHHHHHHHHhcC-CeeEEeeh
Q 006251 466 TYTQYFAESLIKEAETDDKIVAIHAAMGGGTGL-----NYFQK-RFPDRCFDVGIAEQHAVTFAAGLASEG-VKPFCAIY 538 (654)
Q Consensus 466 s~~~a~~~aL~~~~~~d~~vvvl~aDlg~s~~l-----~~f~~-~fp~R~id~GIaE~~mvg~AaGlA~~G-~~Pi~~tf 538 (654)
+++++++++|.++++++|+++++++|+++++++ .+|++ +||+||||+||+||+|+++|+|||++| ++||++||
T Consensus 350 ~~r~a~~~~L~~~~~~~p~~~~~~aDl~~s~~~~~~~~~~f~~~~~p~R~i~~gIaE~~~~~~a~GlA~~Gg~~P~~~t~ 429 (651)
T 2e6k_A 350 ATRAASGRALNLLAPRLPELLGGSADLTPSNNTKAEGMEDFSRANPLGRYLHFGVREHAMGAILNGLNLHGGYRAYGGTF 429 (651)
T ss_dssp CHHHHHHHHHHHHGGGCTTEEEEESSCHHHHTCSCTTCCBCBTTBTTCCEEECCSCHHHHHHHHHHHHHHSSCEEEEEEE
T ss_pred HHHHHHHHHHHHHHhhCCCEEEEeCccccccccccccccccCccCCCCceEecCcCHHHHHHHHHHHHHcCCCEEEEEeH
Confidence 789999999999999999999999999977654 46887 999999999999999999999999998 99999999
Q ss_pred HHHHHhHHHHHHHhhhcCCCCEEEEEecCCc-cCCCCCCCCChhhHHHHhcCCCCEEEecCCHHHHHHHHHHHHhCCCCc
Q 006251 539 SSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRP 617 (654)
Q Consensus 539 a~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~-~g~dG~tHq~~edla~~r~iPnl~V~~PsD~~E~~~ll~~al~~~~~P 617 (654)
+.|+.++++|| +++|++++||++++++.|+ +|+||+|||++||+++||++|||+|++|+|++|+++++++|++..++|
T Consensus 430 ~~F~~~~~~ai-r~~a~~~lpvv~~~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~E~~~~l~~A~~~~~~P 508 (651)
T 2e6k_A 430 LVFSDYMRPAI-RLAALMGVPTVFVFTHDSIALGEDGPTHQPVEHLMSLRAMPNLFVIRPADAYETFYAWLVALRRKEGP 508 (651)
T ss_dssp GGGGGGSHHHH-HHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCSSHHHHHHHHHHHHHCCSSC
T ss_pred HHHHHHHHHHH-HHHHhcCCCEEEEEECCccccCCCcCccccHHHHHHhcCCCCcEEEecCCHHHHHHHHHHHHHcCCCC
Confidence 99998999996 5589999999999988877 789999999999999999999999999999999999999998755899
Q ss_pred EEEEecCCCCCCccCCCCCCCCCcccCceEEecc
Q 006251 618 SCFRFPRGNGIGAVLPPNNKGTPLETSLDSWPMS 651 (654)
Q Consensus 618 ~~ir~~r~~~~~~~~p~~~~~~~~~iGKa~vi~~ 651 (654)
++||++|++.+. ++.. ....++.| +.++++
T Consensus 509 v~i~~~r~~~~~--~~~~-~~~~~~~G-~~vl~~ 538 (651)
T 2e6k_A 509 TALVLTRQAVPL--LSPE-KARGLLRG-GYVLED 538 (651)
T ss_dssp EEEECCSSCBCC--CCHH-HHGGGGGS-SEEEEC
T ss_pred EEEEEeCCCCCC--CCcc-hhhhhcCC-CEEEee
Confidence 999999987542 2211 01246777 566654
No 13
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=100.00 E-value=4.7e-76 Score=679.08 Aligned_cols=430 Identities=21% Similarity=0.316 Sum_probs=363.7
Q ss_pred HHHHHHHHHHHHHHHHhhc-cCCCCCCCccHHHHHHHHHh---hcC--C----CCcEEEecCCchH---HHHHHHcCC--
Q 006251 159 DLEQLAAELRADIVNSVSK-TGGHLSANLGVVELTLALHR---VFN--T----PDDKIIWDVGHQA---YVHKILTGR-- 223 (654)
Q Consensus 159 ~L~~la~~lR~~il~~v~~-~~GH~gsslg~vel~~aL~~---v~~--~----p~Dr~I~s~GH~a---Y~~~~l~Gr-- 223 (654)
+|+++|++||..+++++.+ ++||+|++||++|++++||+ .++ + ++||||+|+||++ |++++++|+
T Consensus 5 ~~~~~a~~iR~~~~~~v~~a~~GH~g~~ls~a~~~~~L~~~~l~~~p~~p~~~~rDrfvls~GH~~~~lYa~l~l~G~~~ 84 (673)
T 1r9j_A 5 SIEKVANCIRCLAADIVQGGKSGHPGTPMGMAPMSAVLWTEVMKYNSQDPDWVDRDRFVMSNGHGCALQYALLHMAGYNL 84 (673)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCSCCHHHHHTHHHHHHHHHTTCCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHhhCCCCCCCCCCCCCeEEEccccHHHHHHHHHHHcCCCC
Confidence 3788999999999999987 89999999999999999986 243 2 3799999999999 999999999
Q ss_pred -hHHHHHHHhcCC-CCCCCCCCCCCccccCcccchhhHHHHHHHHHHHHHcC----------CCCeEEEEEcCCCcccch
Q 006251 224 -RSRMNTMRKTSG-LAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILG----------KNNNVISVIGDGAMTAGQ 291 (654)
Q Consensus 224 -~~~l~~lrq~gg-l~G~p~~~es~~~~fg~G~lG~~is~AlGmAlA~kl~g----------~~~~VvaviGDGal~eG~ 291 (654)
.++|.+|||.++ ++|||++.+++++.+++|++|+++|+|+|||+|.++++ .+++|||++|||+++||+
T Consensus 85 ~~~~l~~~r~~~s~~~ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~g~~~~d~~v~~~~GDG~~~eG~ 164 (673)
T 1r9j_A 85 TMDDLKGFRQDGSRTPGHPERFVTPGVEVTTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGV 164 (673)
T ss_dssp CHHHHHTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHH
T ss_pred CHHHHHhhccCCCCCCCCCCCCCCCCeeeccCCCCCcHHHHHHHHHHHHHhhhhccccccCCCCCEEEEEECcchhcccH
Confidence 488999999987 68999988889999999999999999999999999765 688999999999999999
Q ss_pred HHHHHHHHhhcCC-CEEEEEECCCCCcccccccCCCCCchhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHH
Q 006251 292 AYEAMNNAGFLDA-NLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAK 370 (654)
Q Consensus 292 ~~EAln~A~~~~l-nLi~Il~dN~~~s~pt~~~~g~~~~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k 370 (654)
+|||+++|+.+++ |+++|+|||++++ ++++... + ..++.
T Consensus 165 ~~Eal~~A~~~~L~~li~i~d~N~~~i------~~~~~~~--~------------------------------~~d~~-- 204 (673)
T 1r9j_A 165 CQEALSLAGHLALEKLIVIYDSNYISI------DGSTSLS--F------------------------------TEQCH-- 204 (673)
T ss_dssp HHHHHHHHHHHTCTTEEEEEEECSBCS------SSBGGGT--C------------------------------CCCHH--
T ss_pred HHHHHHHHHHhCCCcEEEEEECCCCcc------ccchhhc--c------------------------------CHhHH--
Confidence 9999999999986 5999999998643 2221100 0 01222
Q ss_pred HHHHhhhccCCChhhhhhhcCCeEEeecCC-CCHHHHHHHHHHhHhCCCCCCEEEEEEeecCCCCChhhcCcccccccc-
Q 006251 371 VDEYARGLISASGSTFFEELGLYYIGPVDG-HNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVV- 448 (654)
Q Consensus 371 ~~~~~r~~~~~~~~~lfea~G~~~ig~vDG-hDi~~L~~al~~ak~~~~~gP~lI~v~T~KG~G~~~ae~~~~~~Hg~~- 448 (654)
.+|++|||+++..||| ||+++|.++++++++. .++|++|+++|.||+|++ +| +..+||+.+
T Consensus 205 --------------~~~~a~G~~~~~~vdG~~d~~~l~~Al~~A~~~-~~~P~lI~~~T~kg~G~~-~~-~~~~~H~~~~ 267 (673)
T 1r9j_A 205 --------------QKYVAMGFHVIEVKNGDTDYEGLRKALAEAKAT-KGKPKMIVQTTTIGFGSS-KQ-GTEKVHGAPL 267 (673)
T ss_dssp --------------HHHHHTTCEEEEESCTTTCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTTST-TT-TSGGGTSSCC
T ss_pred --------------HHHHHCCCeEEEEeCCCCCHHHHHHHHHHHHHc-CCCCEEEEEecccccccc-cC-CCcccccCCC
Confidence 3499999999888999 9999999999999863 479999999999999999 55 456899863
Q ss_pred ------------------CCCCcc------------ccc--------c------------------c---CC--------
Q 006251 449 ------------------KFDPKT------------GKQ--------F------------------K---TK-------- 461 (654)
Q Consensus 449 ------------------~f~~~t------------g~~--------~------------------~---~~-------- 461 (654)
+|...+ ++. + . +.
T Consensus 268 ~~ee~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~~~P~~~~~~~~~~~~~~p~~~~~~~p~ 347 (673)
T 1r9j_A 268 GEEDIANIKAKFGRDPQKKYDVDDDVRAVFRMHIDKCSAEQKAWEELLAKYTAAFPAEGAAFVAQMRGELPSGWEAKLPT 347 (673)
T ss_dssp CHHHHHHHHHHTTSCSSCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCCTTTGGGSCC
T ss_pred CHHHHHHHHHhcCCCCcccccCCHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhChhHHHHHHHHhcCCCCchhhhhccc
Confidence 222111 000 0 0 00
Q ss_pred -CCchhHHHHHHHHHHHHHhhCCcEEEEecCccCCCChh--h-----HHH-hCCCCccccchhHHHHHHHHHHHHhc-CC
Q 006251 462 -SPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGLN--Y-----FQK-RFPDRCFDVGIAEQHAVTFAAGLASE-GV 531 (654)
Q Consensus 462 -~~~~s~~~a~~~aL~~~~~~d~~vvvl~aDlg~s~~l~--~-----f~~-~fp~R~id~GIaE~~mvg~AaGlA~~-G~ 531 (654)
.+..+++++++++|.++++++|+++++++|+++++++. + |++ +||+||||+||+||+|+++|+|||++ |+
T Consensus 348 ~~~~~a~r~a~~~~L~~l~~~~p~vv~~~aDl~~s~~~~~~~~~~~~f~~~~~~~R~id~GIaE~~~~~~a~GlA~~GG~ 427 (673)
T 1r9j_A 348 NSSAIATRKASENCLAVLFPAIPALMGGSADLTPSNLTRPASANLVDFSSSSKEGRYIRFGVREHAMCAILNGLDAHDGI 427 (673)
T ss_dssp CCSCEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCSCGGGCCCBCBTTBTTCCEEECCSCHHHHHHHHHHHHHHSSC
T ss_pred cccchHHHHHHHHHHHHHHhhCCCEEEEeccccccccccccCcccccccccCCCCCeEecCccHHHHHHHHHHHHhcCCC
Confidence 12467899999999999999999999999998776652 3 887 99999999999999999999999999 69
Q ss_pred eeEEeehHHHHHhHHHHHHHhhhcCCCCEEEEEecCCc-cCCCCCCCCChhhHHHHhcCCCCEEEecCCHHHHHHHHHHH
Q 006251 532 KPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATA 610 (654)
Q Consensus 532 ~Pi~~tfa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~-~g~dG~tHq~~edla~~r~iPnl~V~~PsD~~E~~~ll~~a 610 (654)
+||+++|++|+.++++||++ +|++++||+++++++|+ +|+||+|||++||+++||+||||+|++|+|++|++++|++|
T Consensus 428 ~P~~~~~~~F~~~~~~~ir~-~a~~~~pvv~~~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~e~~~~l~~a 506 (673)
T 1r9j_A 428 IPFGGTFLNFIGYALGAVRL-AAISHHRVIYVATHDSIGVGEDGPTHQPVELVAALRAMPNLQVIRPSDQTETSGAWAVA 506 (673)
T ss_dssp EEEEEEEGGGGGGGHHHHHH-HHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHHSTTCEEECCSSHHHHHHHHHHH
T ss_pred EEEEEehHHHHHHHHHHHHH-HHhcCCCEEEEEECCccCcCCCCcccCCHHHHHHHcCCCCCEEEeCCCHHHHHHHHHHH
Confidence 99999999999999999755 89999999999988876 79999999999999999999999999999999999999999
Q ss_pred HhCCCCcEEEEecCCCCCCccCCCCCCCC-CcccCceEEecc
Q 006251 611 AVIDDRPSCFRFPRGNGIGAVLPPNNKGT-PLETSLDSWPMS 651 (654)
Q Consensus 611 l~~~~~P~~ir~~r~~~~~~~~p~~~~~~-~~~iGKa~vi~~ 651 (654)
++..++|++||++|++.+. ++. +.+ .+++| +.|+++
T Consensus 507 ~~~~~~Pv~i~~~r~~~~~--~~~--~~~~~~~~G-a~vl~~ 543 (673)
T 1r9j_A 507 LSSIHTPTVLCLSRQNTEP--QSG--SSIEGVRHG-AYSVVD 543 (673)
T ss_dssp HHCTTCCEEEECCSSEECC--CTT--CCHHHHHTS-CEEEEC
T ss_pred HHhCCCeEEEEEcCCCCCC--CCC--cccccccCC-CEEEee
Confidence 9765899999999987542 232 223 58888 677764
No 14
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=100.00 E-value=5.3e-75 Score=682.94 Aligned_cols=502 Identities=18% Similarity=0.224 Sum_probs=386.3
Q ss_pred CCccccCCCCccccCCCCHHHHH-HHHHHHHHHHHHHhhc-c------CCCCCCCccHHHHHHHHHhh-cCC-----CCc
Q 006251 139 PTPLLDTINYPIHMKNLSTEDLE-QLAAELRADIVNSVSK-T------GGHLSANLGVVELTLALHRV-FNT-----PDD 204 (654)
Q Consensus 139 ~~~~l~~i~~p~~~~~l~~~~L~-~la~~lR~~il~~v~~-~------~GH~gsslg~vel~~aL~~v-~~~-----p~D 204 (654)
.||+|++|+.|.+.+.....+|+ ++|++||+.+++||.+ + +||+|+++|+++++.+||+. |+. |+|
T Consensus 56 ~~~~l~~i~~~~~~~~p~d~~l~~~la~~iR~~~i~~v~~a~~~~~~~gGH~gs~ls~ael~~~l~~~~~~~~~~~~~~D 135 (886)
T 2qtc_A 56 ISNYINTIPVEEQPEYPGNLELERRIRSAIRWNAIMTVLRASKKDLELGGHMASFQSSATIYDVCFNHFFRARNEQDGGD 135 (886)
T ss_dssp CCCSSCSSCGGGCCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHTCSCCCCCSHHHHHHHHHHHHHHHHTCCCCCSSSCCC
T ss_pred CCchhhhCCCccccCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccCcCCcHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence 78999999888887777777899 8999999999999987 6 79999999999999999876 665 688
Q ss_pred EEEecCCchH---HHHHHHcCCh--HHHHHHHh---cCCCCCCCCCCCCCc-cccCcccchhhHHHHHHHHHHHHH----
Q 006251 205 KIIWDVGHQA---YVHKILTGRR--SRMNTMRK---TSGLAGFPKREESVH-DAFGAGHSSTSISAGLGMAVARDI---- 271 (654)
Q Consensus 205 r~I~s~GH~a---Y~~~~l~Gr~--~~l~~lrq---~ggl~G~p~~~es~~-~~fg~G~lG~~is~AlGmAlA~kl---- 271 (654)
||||+||++ |+|++|+|+. ++|.+||| .+|++|||++.++++ +.|++||+|+++++|+|+|+|+|+
T Consensus 136 -~V~~~GH~sp~~Ya~~~l~Gr~~~e~l~~fRq~~~~~gl~~~p~~~~~p~~~~~~tG~~G~g~s~AiG~A~a~~~l~~~ 214 (886)
T 2qtc_A 136 -LVYFQGHISPGVYARAFLEGRLTQEQLDNFRQEVHGNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHR 214 (886)
T ss_dssp -EEECCGGGHHHHHHHHHHTTSSCHHHHTTBTCCTTSSCBCSSCCTTTSTTTCCCCCCSTTHHHHHHHHHHHHHHHHHHT
T ss_pred -EEEEcchhHHHHHHHHHHhCCCCHHHHHhccCCCCCCCCCCCCCcccCCCcccccccccCccHHHHHHHHHHhhhhccc
Confidence 999999999 9999999995 89999999 457999999988887 999999999999999999999998
Q ss_pred ---cCCCCeEEEEEcCCCcccchHHHHHHHHhhcC-CCEEEEEECCCCCcccccccCCCCCchhhhhHHHHHhhhchhHH
Q 006251 272 ---LGKNNNVISVIGDGAMTAGQAYEAMNNAGFLD-ANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFR 347 (654)
Q Consensus 272 ---~g~~~~VvaviGDGal~eG~~~EAln~A~~~~-lnLi~Il~dN~~~s~pt~~~~g~~~~vgals~~l~~~~~~~~~~ 347 (654)
++.+++||||+|||+++||++|||||+|+.++ .|||||||||++++ +++......+...|.+.+...+|.
T Consensus 215 ~~~~~~~~~v~aviGDG~l~eG~~~EAl~~A~~~~L~nli~Vvn~N~~si------~~~v~~~~~~~~~l~~~~~~~G~~ 288 (886)
T 2qtc_A 215 GLKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRL------DGPVTGNGKIINELEGIFEGAGWN 288 (886)
T ss_dssp TSCCCTTCCEEEEEETGGGGSHHHHTTHHHHHHTTCTTEEEEEEECSBCS------SSBSCTTSCHHHHHHHHHHHTTCE
T ss_pred ccccCCCCEEEEEECCccccccchHHHHHHHHHcCCCcEEEEEECCCccc------CCCccccccccHHHHHHHHhCCCC
Confidence 77899999999999999999999999999998 47999999999753 444332223455666655555544
Q ss_pred HHHHH----HHHHHhh-cCCchHHHHHHHHH------------HhhhccCCCh---hhhhh---hcCCeEEeecCCCCHH
Q 006251 348 KLREA----AKSITKQ-IGGQTHEVAAKVDE------------YARGLISASG---STFFE---ELGLYYIGPVDGHNVE 404 (654)
Q Consensus 348 ~~r~~----~k~~~~~-~g~~~~~~~~k~~~------------~~r~~~~~~~---~~lfe---a~G~~~ig~vDGhDi~ 404 (654)
.++.. .+.++++ .++.+.+..+++.+ |.|..+.... ..+.+ ..|+.|+ ++||||++
T Consensus 289 ~~~v~~g~~~~~ll~~~~~~~l~~~~~~~~d~~~q~~~~~~g~~~r~~~F~~~~~~~~l~~~~~d~~i~~l-~~dGhD~~ 367 (886)
T 2qtc_A 289 VIKVMWGSRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAALVADWTDEQIWAL-NRGGHDPK 367 (886)
T ss_dssp EEEECBCTTHHHHHHHCSSCHHHHHHHHCCHHHHHHHTTSCHHHHHHHTSTTSHHHHTTTTTCCHHHHHTC-CBGGGCHH
T ss_pred EEEEecchhHHHHHccCCchHHHHHHHhccchhhhhhhhccchHHHHhhcccchHHHHHHhhcChhhHhhc-ccCCCCHH
Confidence 32210 1222222 13333443333333 4444333321 11222 2378888 99999999
Q ss_pred HHHHHHHHhHhCCCCCCEEEEEEeecCCCCChhhcCcccccccc--------------------------CCCCcc----
Q 006251 405 DLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVV--------------------------KFDPKT---- 454 (654)
Q Consensus 405 ~L~~al~~ak~~~~~gP~lI~v~T~KG~G~~~ae~~~~~~Hg~~--------------------------~f~~~t---- 454 (654)
+|++++++|++. .++|++||++|+||+|+++++.+..++|+.. +|+..+
T Consensus 368 ~l~~a~~~A~~~-~~~PtlI~~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r~~~~~~~~~e~~~~~~f~~~~~~~~ 446 (886)
T 2qtc_A 368 KIYAAFKKAQET-KGKATVILAHTIKGYGMGDAAKGKNIAHQVKKMNMDGVRHIRDRFNVPVSDADIEKLPYITFPEGSE 446 (886)
T ss_dssp HHHHHHHHHHHC-CSSCEEEEEECCTTTTCTTCC-------------CHHHHHHHHHTTCSCCHHHHTTCCCCCCCTTSH
T ss_pred HHHHHHHHHHHc-CCCCEEEEEeeeeccccchhhcCCccccCCCCCCHHHHHHHHHHcCCCCChhhhccccccCCccchH
Confidence 999999999875 3689999999999999987766678899873 343222
Q ss_pred -------------ccccc-----------C-----------CCCchhHHHHHHHHHHHHHhhC---CcEEEEecCccC--
Q 006251 455 -------------GKQFK-----------T-----------KSPTLTYTQYFAESLIKEAETD---DKIVAIHAAMGG-- 494 (654)
Q Consensus 455 -------------g~~~~-----------~-----------~~~~~s~~~a~~~aL~~~~~~d---~~vvvl~aDlg~-- 494 (654)
+.... + ..+..+++++|+++|.++++++ ++||++.+|+..
T Consensus 447 ~~~~~~~r~~~l~g~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~atr~afg~~L~~l~~~~~~~~~iV~i~pd~~~~~ 526 (886)
T 2qtc_A 447 EHTYLHAQRQKLHGYLPSRQPNFTEKLELPSLQDFGALLEEQSKEISTTIAFVRALNVMLKNKSIKDRLVPIIADEARTF 526 (886)
T ss_dssp HHHHHHHHHHHTTSCSSCCCCSCCSCCCCCCGGGGHHHHSCCSSCBCHHHHHHHHHHHHTTCTTTTTTEEEEESSCSGGG
T ss_pred HHHHHHHHHHHhcccCcchhhhhhhcccCCchhhhhhhccCCCCcchHHHHHHHHHHHHHhhcccCCcEEEEcCcccccc
Confidence 10000 0 1134678999999999999998 999999999543
Q ss_pred -------CCCh-----hhHH-----------HhCCCCccccchhHHHH-H---HHHHHHHhcC--CeeEEeehHHH-HHh
Q 006251 495 -------GTGL-----NYFQ-----------KRFPDRCFDVGIAEQHA-V---TFAAGLASEG--VKPFCAIYSSF-LQR 544 (654)
Q Consensus 495 -------s~~l-----~~f~-----------~~fp~R~id~GIaE~~m-v---g~AaGlA~~G--~~Pi~~tfa~F-l~r 544 (654)
++++ +.|. +.||+||||+||+||+| + |+|+|||++| ++||+.+|++| ++|
T Consensus 527 G~~dl~~S~~i~~~~~~~f~~~d~~~~~~~~e~~~~R~~d~GIaE~~a~~~~~g~a~GlA~~G~~~~P~~~~ys~F~~qR 606 (886)
T 2qtc_A 527 GMEGLFRQIGIYSPNGQQYTPQDREQVAYYKEDEKGQILQEGINELGAGCSWLAAATSYSTNNLPMIPFYIYYSMFGFQR 606 (886)
T ss_dssp TCHHHHHHHCBBCC-----------------CBTTCCBEECCSCHHHHHHHHHHHHTHHHHTSCCCEEEEEEEGGGSHHH
T ss_pred CcccccccccccccCCcccccccchhhhhhhhcCCCceeeeccCchhhhhHHHHHHHHHHhcCCCceEEEEEehHHHHHH
Confidence 2222 4453 67899999999999995 5 7999999999 89999999999 799
Q ss_pred HHHHHHHhhhcCCCCEEEEEecCCc-cCCCCCCCCChhhHHHHhcCCCCEEEecCCHHHHHHHHHHHHhCCCCc----EE
Q 006251 545 GYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRP----SC 619 (654)
Q Consensus 545 a~dQI~~~~a~~~lpV~~v~~~~G~-~g~dG~tHq~~edla~~r~iPnl~V~~PsD~~E~~~ll~~al~~~~~P----~~ 619 (654)
++|||++++++++.+|++.++.++. +|+||+|||+.+|+++||++|||+|++|+|++|++++|++|++..++| ++
T Consensus 607 a~Dqi~~~~d~~~~~v~l~~~~~~~~~g~dG~tHq~~~~~a~lr~iPnl~V~~Pada~E~~~~l~~al~~~~gP~~e~v~ 686 (886)
T 2qtc_A 607 IGDLCWAAGDQQARGFLIGGTSGRTTLNGEGLQHEDGHSHIQSLTIPNCISYDPAYAYEVAVIMHDGLERMYGEKQENVY 686 (886)
T ss_dssp HHHHHHHHHHTTCCCEEEEESCSTTTSTTTCTTTCCSCHHHHHTTSTTEEEECCSSHHHHHHHHHHHHHHHHSTTCCCCE
T ss_pred HHHHHHHHHHHhcCCEEEEEecCcccCCCCCCccCCcchHHHHhhCCCCEEEecCCHHHHHHHHHHHHHhcCCCCCceEE
Confidence 9999999999999999998764433 688999999999999999999999999999999999999999766789 99
Q ss_pred EEecCCC--CCCccCCCCCCCCCcccCceEEecc
Q 006251 620 FRFPRGN--GIGAVLPPNNKGTPLETSLDSWPMS 651 (654)
Q Consensus 620 ir~~r~~--~~~~~~p~~~~~~~~~iGKa~vi~~ 651 (654)
||++|++ +....+|.. ..+.+ +||+.|+++
T Consensus 687 i~~~r~~~~~~~p~~~~~-~~~~~-~gga~vlr~ 718 (886)
T 2qtc_A 687 YYITTLNENYHMPAMPEG-AEEGI-RKGIYKLET 718 (886)
T ss_dssp EEEECCSCCBCCCCCCTT-CHHHH-HHTCEEEEE
T ss_pred EEEeCCccccCCCCCCcc-hhhhc-cCceEEEEe
Confidence 9999975 210123321 11234 899998875
No 15
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=100.00 E-value=1.2e-54 Score=502.78 Aligned_cols=429 Identities=14% Similarity=0.182 Sum_probs=330.2
Q ss_pred HHHHHHHHHHHHHHHHHHh--------------hc-cCCCCCCCccHHHHHHHHHhhc-CCCCcE-EEecCCchH---HH
Q 006251 157 TEDLEQLAAELRADIVNSV--------------SK-TGGHLSANLGVVELTLALHRVF-NTPDDK-IIWDVGHQA---YV 216 (654)
Q Consensus 157 ~~~L~~la~~lR~~il~~v--------------~~-~~GH~gsslg~vel~~aL~~v~-~~p~Dr-~I~s~GH~a---Y~ 216 (654)
++.+-+.|+-|+.--+++. .+ .+||+|+++|++++.+.+..+. ...+|| ||+|+||++ |+
T Consensus 45 ~~~~~raanyl~~~~iyl~~n~ll~r~L~~d~vk~a~sGH~G~~~g~a~iy~~~~~~~~~~~rDr~fvls~GHg~p~lYa 124 (845)
T 3ahc_A 45 MDKYWRVTNYMSIGQIYLRSNPLMKEPFTRDDVKHRLVGHWGTTPGLNFLLAHINRLIADHQQNTVFIMGPGHGGPAGTS 124 (845)
T ss_dssp HHHHHHHHHHHHHHHHHBSSCTTCCSSCCGGGBCSSCCSCCTTHHHHHHHHHHHHHHHHHHTBCBCCEESSGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCccccCcCCHHHhhhcCCCCCCCCHHHHHHHHHHHHhcccCCCceEEEECcCcHHHHHHH
Confidence 3345556666665555543 43 6899999999999955554332 235899 799999998 89
Q ss_pred HHHHcCC-----------hHHHHH-HHhcC---CCCCCCCCCCCCccccCcccchhhHHHHHHHHHHHHHcCCCCeEEEE
Q 006251 217 HKILTGR-----------RSRMNT-MRKTS---GLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISV 281 (654)
Q Consensus 217 ~~~l~Gr-----------~~~l~~-lrq~g---gl~G~p~~~es~~~~fg~G~lG~~is~AlGmAlA~kl~g~~~~Vvav 281 (654)
.++|.|. .+.|.+ |||++ |++|||.+ +.++....+|++|+||+.|+|||+ .+++.+|+|+
T Consensus 125 ~l~l~G~~~~~~p~~s~d~e~Lk~lfrqfs~~gg~pgHp~~-~tpGve~~tG~LGqGls~AvG~A~----~~~~~~v~~~ 199 (845)
T 3ahc_A 125 QSYVDGTYTEYYPNITKDEAGLQKFFRQFSYPGGIPSHFAP-ETPGSIHEGGELGYALSHAYGAVM----NNPSLFVPCI 199 (845)
T ss_dssp HHHHHTHHHHHCTTSCSSHHHHHHHHHHBTCTTSBCSSCCT-TSTTCSCCCSSTTCHHHHHHHHHT----TCTTCEEEEE
T ss_pred HHHHcCCCccccccccccHHHHHHHHHhccCCCCCCCCCCC-CCCCeecCCCCccchHhHHhhhhh----cCCCCeEEEE
Confidence 8999997 256766 67764 58999975 689999999999999999999995 4678999999
Q ss_pred EcCCCcccch---HHHHHHHHhhc-CCCEEEEEECCCCCcccccccCCCCCchhhhhHHHHHhhhchhHHHHHHHHHHHH
Q 006251 282 IGDGAMTAGQ---AYEAMNNAGFL-DANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSIT 357 (654)
Q Consensus 282 iGDGal~eG~---~~EAln~A~~~-~lnLi~Il~dN~~~s~pt~~~~g~~~~vgals~~l~~~~~~~~~~~~r~~~k~~~ 357 (654)
+|||+.++|. .||+.++|... +.||++|+++|+.+ ++|++. +.-+
T Consensus 200 ~GDGe~e~GsLAg~wea~~~~~~~~l~nl~~i~D~N~~~------i~g~t~-l~~~------------------------ 248 (845)
T 3ahc_A 200 IGDGEAETGPLATGWQSNKLVNPRTDGIVLPILHLNGYK------IANPTI-LARI------------------------ 248 (845)
T ss_dssp EETTGGGSHHHHHHGGGGGSCCTTTSCEEEEEEEECSBS------SSSBCH-HHHS------------------------
T ss_pred ECCCchhhhcchhhhHHhhhhhhhcCCCEEEEEECCCCc------CCCCcc-cccc------------------------
Confidence 9999999999 99999999866 58999999999954 344432 1000
Q ss_pred hhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCC-C--CHHHHHHHHHH---------------hHhCCCC
Q 006251 358 KQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDG-H--NVEDLVTIFQR---------------VKEMPAP 419 (654)
Q Consensus 358 ~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDG-h--Di~~L~~al~~---------------ak~~~~~ 419 (654)
..+++.+| |++|||+++..||| | |+++|.+++.+ +++....
T Consensus 249 -----~~e~l~~r----------------f~a~Gw~v~~~vdG~~~~D~~~i~~a~~~al~~~~~~i~~i~~~A~~~~~~ 307 (845)
T 3ahc_A 249 -----SDEELHDF----------------FRGMGYHPYEFVAGFDNEDHMSIHRRFAELFETIFDEICDIKAAAQTDDMT 307 (845)
T ss_dssp -----CHHHHHHH----------------HHHTTEEEEEEECSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSS
T ss_pred -----CcHHHHHH----------------HHHCCCEEeEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 12555555 99999999767899 9 99999987642 2221236
Q ss_pred CC--EEEEEEeecCC-------CCChhhcCccccccccC-------------------------CCC------------c
Q 006251 420 GP--VLIHVVTEKGK-------GYPPAEAAADRMHGVVK-------------------------FDP------------K 453 (654)
Q Consensus 420 gP--~lI~v~T~KG~-------G~~~ae~~~~~~Hg~~~-------------------------f~~------------~ 453 (654)
+| ++|+++|.||+ |.+ +|+ ..+||+++. |+. .
T Consensus 308 kP~w~~Ii~rT~kG~tgp~~~~G~~-~eg-~~~~H~~pl~~~~~~~~~~~~l~~wl~~~~p~elF~~~~~~~~~~~~~~~ 385 (845)
T 3ahc_A 308 RPFYPMLIFRTPKGWTCPKFIDGKK-TEG-SWRAHQVPLASARDTEEHFEVLKGWMESYKPEELFNADGSIKDDVTAFMP 385 (845)
T ss_dssp CCCEEEEEEECCTTTTSCSEETTEE-CTT-SGGGSSCSCTTTTTCHHHHHHHHHHHHHTCGGGTBCTTSCBCHHHHTTSC
T ss_pred CCCCeEEEEECcccCCCCCCCCCcc-cCC-CccccCCCCCCcccCHHHHHHHhhhccCCCchhccCCchHHHHHHHHhCc
Confidence 89 99999999999 984 665 468998763 110 0
Q ss_pred cccc------------cc-----CC--------------C-CchhHHHHHHHHHHHHHhhCCc-EEEEecCccCCCChhh
Q 006251 454 TGKQ------------FK-----TK--------------S-PTLTYTQYFAESLIKEAETDDK-IVAIHAAMGGGTGLNY 500 (654)
Q Consensus 454 tg~~------------~~-----~~--------------~-~~~s~~~a~~~aL~~~~~~d~~-vvvl~aDlg~s~~l~~ 500 (654)
.+.. +. +. . ....-+++++++|.++++++|+ ++++++|+.+|+++..
T Consensus 386 ~g~~r~~~~P~~~~g~l~~~~~lp~~~~~~~~~~~~~~~g~~~~~atra~g~~L~~l~~~~p~~~vv~sADl~~Sn~t~~ 465 (845)
T 3ahc_A 386 KGELRIGANPNANGGVIREDLKLPELDQYEVTGVKEYGHGWGQVEAPRALGAYCRDIIKNNPDSFRIFGPDETASNRLNA 465 (845)
T ss_dssp CGGGSTTTCGGGGGGGTCCCCCCCCGGGGCCTHHHHHCTTEEEECTHHHHHHHHHHHHHHSTTTEEEEESSCTTTTTCGG
T ss_pred chHhHhhhCHHhcCCcCccccCCCChHhhhccccccccCCccchhHHHHHHHHHHHHHHhCCCcEEEEecCCCccccHHH
Confidence 0000 00 00 0 0112367888999999999999 9999999999999988
Q ss_pred HHHh---------C--C--------CCccccchhHHHHHHHHHHHHhcCCeeEEeehHHHH---HhHHHH----HHHhhh
Q 006251 501 FQKR---------F--P--------DRCFDVGIAEQHAVTFAAGLASEGVKPFCAIYSSFL---QRGYDQ----VVHDVD 554 (654)
Q Consensus 501 f~~~---------f--p--------~R~id~GIaE~~mvg~AaGlA~~G~~Pi~~tfa~Fl---~ra~dQ----I~~~~a 554 (654)
|.+. + | +|||+ ||+||+|+|+|+|||++|++||+.+|++|+ .|+++| |++.++
T Consensus 466 f~~~t~~~~~~~~~~~P~d~~~~~~GR~i~-GI~Eh~M~gia~Glal~G~~~f~~t~atFl~~~~~a~~q~akwiR~a~a 544 (845)
T 3ahc_A 466 TYEVTDKQWDNGYLSGLVDEHMAVTGQVTE-QLSEHQCEGFLEAYLLTGRHGIWSSYESFVHVIDSMLNQHAKWLEATVR 544 (845)
T ss_dssp GGGTCCEECCSCCCCTTTCCSEESSCSEEE-CSCHHHHHHHHHHHHHTTCEEEEEEEHHHHGGGHHHHHHHHHHHHHHHH
T ss_pred HHhhcccccccccccCCcccccCCCCcEee-eecHHHHHHHHHHHHhcCCCCceecchhhhchhhhHHHHHHHHHHhhHH
Confidence 7777 6 7 89999 999999999999999999999999988887 799999 887734
Q ss_pred cC----CC-CEEEEEecCCc-cCCCCCCCCCh--hhHHHHh---cCCCCEEEecCCHHHHHHHHHHHHhCCCCcEEEEec
Q 006251 555 LQ----KL-PVRFAMDRAGL-VGADGPTHCGA--FDVTFMS---CLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFP 623 (654)
Q Consensus 555 ~~----~l-pV~~v~~~~G~-~g~dG~tHq~~--edla~~r---~iPnl~V~~PsD~~E~~~ll~~al~~~~~P~~ir~~ 623 (654)
++ .. +|+++++|.|+ +|+||+|||++ +|+..++ .+|||+|++|+|++|+..+++.|++..+.|++++++
T Consensus 545 ~~~wr~~~~~v~~v~Th~si~~GeDGpTHQ~~e~~d~l~~~r~~~iPn~~V~~PaDanet~~a~~~al~~~~~~~v~v~s 624 (845)
T 3ahc_A 545 EIPWRKPISSVNLLVSSHVWRQDHNGFSHQDPGVTSLLINKTFNNDHVTNIYFATDANMLLAISEKCFKSTNKINAIFAG 624 (845)
T ss_dssp HCTTSCCCBCEEEEEESCGGGCTTTCGGGCCCTHHHHHGGGCCTTCCCEEEEECCSHHHHHHHHHHHHHCBSCEEEEECC
T ss_pred hhhhcccCCceEEEEeCCceeecCCCCCCCCcHHHHHHHHhhccCCCCeEEEeCCCHHHHHHHHHHHHHcCCCeEEEEec
Confidence 43 44 79999999998 79999999995 4544444 679999999999999999999999866666666679
Q ss_pred CCCCCCccCCCCCCCC---CcccCceEEe
Q 006251 624 RGNGIGAVLPPNNKGT---PLETSLDSWP 649 (654)
Q Consensus 624 r~~~~~~~~p~~~~~~---~~~iGKa~vi 649 (654)
|++.+. .++ .++ .+..|+..|.
T Consensus 625 Rq~~p~-~~~---~~~a~~~~~~G~~v~~ 649 (845)
T 3ahc_A 625 KQPAPT-WVT---LDEARAELEAGAAEWK 649 (845)
T ss_dssp CSCEEE-CSC---HHHHHHHHHHSEEECT
T ss_pred CCCCCc-cCC---chhhhhhhcCCeEEEE
Confidence 998543 121 122 4677888766
No 16
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=100.00 E-value=9.8e-49 Score=461.90 Aligned_cols=438 Identities=14% Similarity=0.110 Sum_probs=301.4
Q ss_pred CCCCHHHHHHHHHH---HHHHHHHHhhc-cCCCCCCCccHHHHHHHHHhhcC-----CCCcEEEecCCchHHHHHHH--c
Q 006251 153 KNLSTEDLEQLAAE---LRADIVNSVSK-TGGHLSANLGVVELTLALHRVFN-----TPDDKIIWDVGHQAYVHKIL--T 221 (654)
Q Consensus 153 ~~l~~~~L~~la~~---lR~~il~~v~~-~~GH~gsslg~vel~~aL~~v~~-----~p~Dr~I~s~GH~aY~~~~l--~ 221 (654)
.+++.+++.++.+. +|..--++..+ .+|-.-+..|+..+..++.++++ .++|.++.. .|+...+.+. .
T Consensus 193 ~~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~gkrf~~~G~Ea~i~g~~~~~~~a~~~g~~D~v~g~-~hRg~~~~Lan~~ 271 (933)
T 2jgd_A 193 ATFNSEEKKRFLSELTAAEGLERYLGAKFPGAKRFSLEGGDALIPMLKEMIRHAGNSGTREVVLGM-AHRGRLNVLVNVL 271 (933)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCCTTCTTHHHHHHHHHHHHHTTTCCEEEEEC-CSTTHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCchHHHHHHHHHHHHHhhCCCCCEEecC-CCcCHHHHHHHHh
Confidence 45787877766643 33333333333 33332234566444444433332 367877642 2665557777 6
Q ss_pred CC--hHHHHHHHhcCCCCCCCC-CCCC-----------Cc------cccCcccchhhHHHHHHHHHHHHHcC-----CCC
Q 006251 222 GR--RSRMNTMRKTSGLAGFPK-REES-----------VH------DAFGAGHSSTSISAGLGMAVARDILG-----KNN 276 (654)
Q Consensus 222 Gr--~~~l~~lrq~ggl~G~p~-~~es-----------~~------~~fg~G~lG~~is~AlGmAlA~kl~g-----~~~ 276 (654)
|. .+.|.+|.-. ..|... +..+ ++ ..+..+|+|+++|+|+|+|+|.++++ .+.
T Consensus 272 G~~~~~i~~e~~G~--~~g~~g~gdv~~Hlg~~~~~~~~gg~~~l~l~~~~shlg~~~p~A~G~A~A~~~~~~~~~~~~~ 349 (933)
T 2jgd_A 272 GKKPQDLFDEFAGK--HKEHLGTGDVKYHMGFSSDFQTDGGLVHLALAFNPSHLEIVSPVVIGSVRARLDRLDEPSSNKV 349 (933)
T ss_dssp CCCHHHHHHHHHTC--C--CCSCCCCGGGCCEEEEEEETTEEEEEEECCCCSSTTCHHHHHHHHHHHHHTTSSSCCGGGE
T ss_pred CCCHHHHHHHhcCC--CCCCCCCCCccccCCcccccccCCCceEEeecccCcccccccCHHHHHHHHHHhhccccCCCCe
Confidence 75 3555666321 112110 0000 01 13567999999999999999999884 678
Q ss_pred eEEEEEcCCCc-ccchHHHHHHHHhhcCCC---EEEEEECCCCCcc--cccccCCCCCchhhhhHHHHHhhhchhHHHHH
Q 006251 277 NVISVIGDGAM-TAGQAYEAMNNAGFLDAN---LIVVLNDNKQVSL--PTATLDGPATPVGALSSALSKLQASTNFRKLR 350 (654)
Q Consensus 277 ~VvaviGDGal-~eG~~~EAln~A~~~~ln---Li~Il~dN~~~s~--pt~~~~g~~~~vgals~~l~~~~~~~~~~~~r 350 (654)
+|||++|||++ ++|++|||||+|+.+++| +|+||+||++.+. ++... ..
T Consensus 350 ~vv~v~GDGa~a~qG~~~Ealn~A~~~~lp~gg~I~vv~nN~~~ist~~~~~~--~~----------------------- 404 (933)
T 2jgd_A 350 LPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTTSNPLDA--RS----------------------- 404 (933)
T ss_dssp EEEEEEEHHHHHHCTHHHHHHHHTTSTTTCCSCCEEEEEECC--------------------------------------
T ss_pred EEEEEECCcccccCCHHHHHHHHhhccCCCCCceEEEEEeCCccccCCCHHhc--cc-----------------------
Confidence 99999999998 899999999999999999 9999999986432 11100 00
Q ss_pred HHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHHHHhHhC--CCCCCEEEEEEe
Q 006251 351 EAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEM--PAPGPVLIHVVT 428 (654)
Q Consensus 351 ~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al~~ak~~--~~~gP~lI~v~T 428 (654)
+.....+++++||+++ .|||+|++++.+++++|++. ...+|++|++.|
T Consensus 405 -----------------------------~~~~~~~a~a~g~p~~-~VdG~D~~av~~a~~~A~e~~r~~~~P~lIe~~t 454 (933)
T 2jgd_A 405 -----------------------------TPYCTDIGKMVQAPIF-HVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVC 454 (933)
T ss_dssp -------------------------------CGGGGGGTTTCCEE-EEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_pred -----------------------------chhHHHHHHHcCCCEE-EECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEee
Confidence 0011234889999998 78999999999999887631 237899999999
Q ss_pred ecCCCCChhhcC---------------------------------------------------------------ccccc
Q 006251 429 EKGKGYPPAEAA---------------------------------------------------------------ADRMH 445 (654)
Q Consensus 429 ~KG~G~~~ae~~---------------------------------------------------------------~~~~H 445 (654)
+|++|+...+.. ...||
T Consensus 455 yR~~GH~~~D~~~yr~~~e~~~~~~~~dPi~~~~~~Li~~Gv~t~~~~~~i~~~~~~~v~~a~~~A~~~~p~~~~~~~~~ 534 (933)
T 2jgd_A 455 YRRHGHNEADEPSATQPLMYQKIKKHPTPRKIYADKLEQEKVATLEDATEMVNLYRDALDAGDCVVAEWRPMNMHSFTWS 534 (933)
T ss_dssp CCCC-----------CCTTHHHHHTSCCHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHTSCCCTTEECCCGGGCTTG
T ss_pred eeecCcCcccchhhCCHHHHHHHHccCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcc
Confidence 999998543210 01234
Q ss_pred cccCC----CCccccccc------------C---------------------CCCchhHHHHHHHHHHHHHhhCCcEEEE
Q 006251 446 GVVKF----DPKTGKQFK------------T---------------------KSPTLTYTQYFAESLIKEAETDDKIVAI 488 (654)
Q Consensus 446 g~~~f----~~~tg~~~~------------~---------------------~~~~~s~~~a~~~aL~~~~~~d~~vvvl 488 (654)
+..++ +++|+...+ + .....+|..+++.+|.+++++|++|+++
T Consensus 535 ~~~~~~~~~~~~tg~~~~~l~~i~~~~~~~p~~~~~~~~v~~~~~~R~~~~~~~~~~dw~~~e~~al~~l~~~~~~V~~~ 614 (933)
T 2jgd_A 535 PYLNHEWDEEYPNKVEMKRLQELAKRISTVPEAVEMQSRVAKIYGDRQAMAAGEKLFDWGGAENLAYATLVDEGIPVRLS 614 (933)
T ss_dssp GGSSCCTTCCCCCCCCHHHHHHHHHHTTCCCTTSCCCHHHHHHHHHHHHHHTTSSCBCHHHHHHHHHHHHHTTTCCEEEE
T ss_pred cccccccccCCCCCCCHHHHHHHHhhhcCCCCCCcccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 33322 222321100 0 0113567888899999999999999999
Q ss_pred ecCccCC------------------CChhhHHHhC-CCCccccchhHHHHHHHHHHHHhcCCe--eEEe-ehHHHHH---
Q 006251 489 HAAMGGG------------------TGLNYFQKRF-PDRCFDVGIAEQHAVTFAAGLASEGVK--PFCA-IYSSFLQ--- 543 (654)
Q Consensus 489 ~aDlg~s------------------~~l~~f~~~f-p~R~id~GIaE~~mvg~AaGlA~~G~~--Pi~~-tfa~Fl~--- 543 (654)
++|++.+ +.++.|.++| |+||+|+||+|++++|+|+|||+.|++ |+++ .|++|+.
T Consensus 615 g~Dv~~gTfs~rh~v~~d~~~g~~~~~l~~l~~~~gp~rv~ds~IaE~~~vg~a~G~A~~G~~~lpv~e~qf~dF~~~AQ 694 (933)
T 2jgd_A 615 GEDSGRGTFFHRHAVIHNQSNGSTYTPLQHIHNGQGAFRVWDSVLSEEAVLAFEYGYATAEPRTLTIWEAQFGDFANGAQ 694 (933)
T ss_dssp ETTTTTCTTSCCCCSEECSSSSCEECGGGCSCTTCCCEEEECCCSCHHHHHHHHHHHHHHCTTSEEEEEC-CGGGGGGGH
T ss_pred CCccCCcchhhhhhhcccccCCceeechHHHHHHcCCCeEEECCcCHHHHHHHHHHHHhcCCCCCCEEEEEEhhhhcccH
Confidence 9999875 4468899999 999999999999999999999999998 9987 5999996
Q ss_pred hHHHHHHHhh-h--cCCCCEEEEEecCCccCCCCCCCCC--hhhHHHHhcCCCCEEEecCCHHHHHHHHHHHHhCC-CCc
Q 006251 544 RGYDQVVHDV-D--LQKLPVRFAMDRAGLVGADGPTHCG--AFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVID-DRP 617 (654)
Q Consensus 544 ra~dQI~~~~-a--~~~lpV~~v~~~~G~~g~dG~tHq~--~edla~~r~iPnl~V~~PsD~~E~~~ll~~al~~~-~~P 617 (654)
|++||+++++ + .+++||+++++++ +.| .|++||+ .|++..++++|||+|++|+|+.|++++|++++.++ ++|
T Consensus 695 ra~DQii~~~~ak~~~~~~vv~~l~~G-~~g-~G~~Hss~~~E~~l~~~~~pnm~V~~Pst~~e~~~lLr~a~~~~~~~P 772 (933)
T 2jgd_A 695 VVIDQFISSGEQKWGRMCGLVMLLPHG-YEG-QGPEHSSARLERYLQLCAEQNMQVCVPSTPAQVYHMLRRQALRGMRRP 772 (933)
T ss_dssp HHHHHTTTTHHHHHCCCCCCEEEEECC-CSS-SCTTSSCCCHHHHHHTCCTTCCEEECCCSHHHHHHHHHHHHHSSCCCC
T ss_pred HHHHHHHHHHHHHHccCCCEEEEEeCC-CCC-CCcccccchHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHhcCCCc
Confidence 9999999888 7 4699999999984 455 5999999 66655556779999999999999999999985444 899
Q ss_pred EEEEecCCCCC-CccCCC----CCCCCCcccCceEEec
Q 006251 618 SCFRFPRGNGI-GAVLPP----NNKGTPLETSLDSWPM 650 (654)
Q Consensus 618 ~~ir~~r~~~~-~~~~p~----~~~~~~~~iGKa~vi~ 650 (654)
++||+||.... +..+++ ..+.+.+++||+++++
T Consensus 773 vii~~pk~l~r~~~~~~~~~~~~~~~f~~~ig~~~~~~ 810 (933)
T 2jgd_A 773 LVVMSPKSLLRHPLAVSSLEELANGTFLPAIGEIDELD 810 (933)
T ss_dssp EEEEECSGGGGCTTCCBCHHHHHHCCCCSEECCCSCCC
T ss_pred EEEEecchhccCCCCcCCccccCCCceeecCCcceEee
Confidence 99999998632 111220 0134678889987654
No 17
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=100.00 E-value=1e-44 Score=425.55 Aligned_cols=340 Identities=15% Similarity=0.117 Sum_probs=250.1
Q ss_pred cccchhhHHHHHHHHHHHHHcC----------CCCeEEEEEcCCCc-ccchHHHHHHHHhhcCCC---EEEEEECCCCCc
Q 006251 252 AGHSSTSISAGLGMAVARDILG----------KNNNVISVIGDGAM-TAGQAYEAMNNAGFLDAN---LIVVLNDNKQVS 317 (654)
Q Consensus 252 ~G~lG~~is~AlGmAlA~kl~g----------~~~~VvaviGDGal-~eG~~~EAln~A~~~~ln---Li~Il~dN~~~s 317 (654)
+||+|+++|+|+|+|+|.++++ .+..+||++|||++ ++|.+|||||+|+.+++| +++||+||++.+
T Consensus 244 ~s~Lg~~~P~A~G~A~A~k~~~~~~~~~~~~~~~~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp~g~vi~iv~NN~~g~ 323 (868)
T 2yic_A 244 PSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGF 323 (868)
T ss_dssp CSSTTTTHHHHHHHHHHHHHHHTCSTTSSSCSCCEEEEEEEEHHHHHHCHHHHHHHTTTTCTTTCCSCCEEEEEECSCBT
T ss_pred CccccccccHHHHHHHHHHhhccCCcccccccCCceEEEEECCcccccccHHHHHHHHHHhcCCCCCCeEEEEEcCCccc
Confidence 6899999999999999999864 56799999999996 899999999999999987 999999997532
Q ss_pred -ccccccCCCCCchhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEe
Q 006251 318 -LPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIG 396 (654)
Q Consensus 318 -~pt~~~~g~~~~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig 396 (654)
+++.... + ......++++|||+++
T Consensus 324 st~~~~~~--s----------------------------------------------------~~~~~~~a~a~G~p~~- 348 (868)
T 2yic_A 324 TTAPTDSR--S----------------------------------------------------SEYCTDVAKMIGAPIF- 348 (868)
T ss_dssp TBCHHHHC--S----------------------------------------------------SSSTTGGGGGGTCCEE-
T ss_pred ccCccccc--c----------------------------------------------------ccCHHHHHHhCCCcEE-
Confidence 2111000 0 0011235899999999
Q ss_pred ecCCCCHHHHHHHHHHhHhC--CCCCCEEEEEEeecCCCCChhhcCc-------ccccccc-C-------------CCCc
Q 006251 397 PVDGHNVEDLVTIFQRVKEM--PAPGPVLIHVVTEKGKGYPPAEAAA-------DRMHGVV-K-------------FDPK 453 (654)
Q Consensus 397 ~vDGhDi~~L~~al~~ak~~--~~~gP~lI~v~T~KG~G~~~ae~~~-------~~~Hg~~-~-------------f~~~ 453 (654)
.|||||++++++++++|.+. ..++|++|++.|+|++|++..+... ..|+... + ++.+
T Consensus 349 ~VdG~D~~av~~a~~~A~~~ar~~~~PvlIe~~tyR~~GHs~~D~p~~~~p~~~~~~~~~~dPi~~~~~~L~~~G~~t~e 428 (868)
T 2yic_A 349 HVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDPSMTQPYMYDVIDTKRGSRKAYTEALIGRGDISMK 428 (868)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCSCSSTTCCGGGTCHHHHHHHTTCCCHHHHHHHHHHHTTSSCHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeecCCCcCcccccccCChHHHHHHHhCCCHHHHHHHHHHHcCCCCHH
Confidence 89999999999999887531 2379999999999999998654310 1122210 0 0000
Q ss_pred ------------------cccc--c-c------------------------------------CC-----CC-ch--hHH
Q 006251 454 ------------------TGKQ--F-K------------------------------------TK-----SP-TL--TYT 468 (654)
Q Consensus 454 ------------------tg~~--~-~------------------------------------~~-----~~-~~--s~~ 468 (654)
..+. . + ++ .+ .. .-+
T Consensus 429 e~~~i~~e~~~~v~~a~~~a~~~~p~~~~~~~~~~~~~~~~~~~~t~~~~~~l~~~~~~~~~~p~~~~~~~~v~~~~~~R 508 (868)
T 2yic_A 429 EAEDALRDYQGQLERVFNEVRELEKHEIEPSESVEADQQIPSKLATAVDKAMLQRIGDAHLALPEGFTVHPRVRPVLEKR 508 (868)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-----------------CCCCCCHHHHHHHHHHTTCCCTTCCCCTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccCCCCccCHHHHHHHHHhhccCCcccccchhHHHHHHHH
Confidence 0000 0 0 00 00 00 001
Q ss_pred H----------HHHHHH--HHHHhhCCcEEEEecCccCCC------------------ChhhH------HH-hCCCCccc
Q 006251 469 Q----------YFAESL--IKEAETDDKIVAIHAAMGGGT------------------GLNYF------QK-RFPDRCFD 511 (654)
Q Consensus 469 ~----------a~~~aL--~~~~~~d~~vvvl~aDlg~s~------------------~l~~f------~~-~fp~R~id 511 (654)
. +++++| -.+++++++|+++++|++.++ .+++| .+ .+|+||+|
T Consensus 509 ~~m~~~~~i~~a~~e~la~~~l~~~~~~V~~~G~Dv~~~Tfs~rh~v~~d~~~g~~~~~~~~l~~~~~~~~~~~p~Rv~d 588 (868)
T 2yic_A 509 REMAYEGRIDWAFAELLALGSLIAEGKLVRLSGQDTQRGTFTQRHAVIVDRKTGEEFTPLQLLATNPDGTPTGGKFLVYN 588 (868)
T ss_dssp HHHHHHCCBCHHHHHHHHHHHHHHTTCEEEEEETTTTTCTTSCCCSSEECTTTCCEECGGGGGGBCTTSCBCSCEEEEEE
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHhcCCCEEEEcCcCCccchhhcchhccccCCCceecchhhhcccccchhhcCCcEEEE
Confidence 1 223322 245899999999999998752 25788 66 56999999
Q ss_pred cchhHHHHHHHHHHHHhcCC--eeEEee-hHHHHHhH---HHHHHHhh---hcCCCCEEEEEecCCccCCCCCCCCC--h
Q 006251 512 VGIAEQHAVTFAAGLASEGV--KPFCAI-YSSFLQRG---YDQVVHDV---DLQKLPVRFAMDRAGLVGADGPTHCG--A 580 (654)
Q Consensus 512 ~GIaE~~mvg~AaGlA~~G~--~Pi~~t-fa~Fl~ra---~dQI~~~~---a~~~lpV~~v~~~~G~~g~dG~tHq~--~ 580 (654)
+||+|++++|+|+|||+.|+ +|++++ |++|+.+| +||+++++ ..+++||+++++++| .| +||+||+ .
T Consensus 589 s~IsE~~~vG~a~G~A~~G~~~~~i~eaqf~dF~~~AQ~~~DQ~i~~~~~k~~~~~~vvi~~p~G~-~G-~Gp~Hs~~~~ 666 (868)
T 2yic_A 589 SALSEFAAVGFEYGYSVGNPDAMVLWEAQFGDFVNGAQSIIDEFISSGEAKWGQLSDVVLLLPHGH-EG-QGPDHTSGRI 666 (868)
T ss_dssp CCSCSHHHHHHHHHHHHHCTTSEEEEECSSGGGGGGGHHHHHHTTTTHHHHHCCCCCCEEEEECCC-SS-SCTTSSCCCH
T ss_pred CCccHHHHHHHHHHHHccCCCCceEEEEehHHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEecCCC-CC-CChhhcCCcH
Confidence 99999999999999999995 566666 99999887 99998886 356999999999887 67 9999998 7
Q ss_pred hhHHHHhcCCCCEEEecCCHHHHHHHHHHHHhCC-CCcEEEEecCCCCC-CccCCCC----CCCCCcccCceEE
Q 006251 581 FDVTFMSCLPNMVVMAPSDEAELMHMVATAAVID-DRPSCFRFPRGNGI-GAVLPPN----NKGTPLETSLDSW 648 (654)
Q Consensus 581 edla~~r~iPnl~V~~PsD~~E~~~ll~~al~~~-~~P~~ir~~r~~~~-~~~~p~~----~~~~~~~iGKa~v 648 (654)
|++..|+++|||+|++|+|+.|++++|++++..+ ++|++|++||..+. +..+++. .+.+..++||+++
T Consensus 667 E~~l~l~~~pnm~V~~Ps~p~~~~~lLr~a~~~~~~~Pvii~~pk~llR~~~~~~~~~~~~~~~f~~~ig~~~~ 740 (868)
T 2yic_A 667 ERFLQLWAEGSMTIAMPSTPANYFHLLRRHGKDGIQRPLIVFTPKSMLRNKAAVSDIRDFTESKFRSVLEEPMY 740 (868)
T ss_dssp HHHHHHCCTTSCEEECCCSHHHHHHHHHHHHHSSCCCCEEEEECSGGGGCTTSCBCHHHHHSCCCCSEECCHHH
T ss_pred HHHHhcCCCCCCEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEechHHhCCCCCCCCccccCCCCceecCCccee
Confidence 8887789999999999999999999999987643 49999999998532 1122210 0123448899876
No 18
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=100.00 E-value=4.4e-44 Score=429.33 Aligned_cols=341 Identities=14% Similarity=0.107 Sum_probs=250.3
Q ss_pred CcccchhhHHHHHHHHHHHHHcC----------CCCeEEEEEcCCCc-ccchHHHHHHHHhhcCCC---EEEEEECCCCC
Q 006251 251 GAGHSSTSISAGLGMAVARDILG----------KNNNVISVIGDGAM-TAGQAYEAMNNAGFLDAN---LIVVLNDNKQV 316 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g----------~~~~VvaviGDGal-~eG~~~EAln~A~~~~ln---Li~Il~dN~~~ 316 (654)
.+||+|+++|+|+|+|+|.++++ .+..+||++|||++ ++|.+|||||+|+.+++| +++||+||++.
T Consensus 488 n~s~Lg~~~p~A~G~A~A~k~~~~~~~~~~~~~~~~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp~g~vi~iv~NN~~g 567 (1113)
T 2xt6_A 488 NPSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIG 567 (1113)
T ss_dssp CCSSTTTTHHHHHHHHHHHHHHTTBSTTSSBSCCCEEEEEEEEHHHHHHCTHHHHHHTTTTCTTTCCSCCEEEEEECSCB
T ss_pred CCccccccccHHHHHHHHHHHhccccCccccccCCcEEEEEECCcccccccHHHHHHHHHhhcCCCCCCeEEEEEeCCcc
Confidence 36899999999999999999876 56889999999995 899999999999999987 99999999853
Q ss_pred c-ccccccCCCCCchhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEE
Q 006251 317 S-LPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYI 395 (654)
Q Consensus 317 s-~pt~~~~g~~~~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i 395 (654)
+ +++... .+ ......++++|||+++
T Consensus 568 ist~~~~~--~s----------------------------------------------------~~~~~~~a~a~G~p~~ 593 (1113)
T 2xt6_A 568 FTTAPTDS--RS----------------------------------------------------SEYCTDVAKMIGAPIF 593 (1113)
T ss_dssp TTBCHHHH--CS----------------------------------------------------SSSTTGGGGGGTCCEE
T ss_pred cccCcccc--cc----------------------------------------------------ccCHHHHHHhcCCcEE
Confidence 3 211100 00 0001235899999999
Q ss_pred eecCCCCHHHHHHHHHHhHh--CCCCCCEEEEEEeecCCCCChhhcCc-------ccc--cccc------------CCCC
Q 006251 396 GPVDGHNVEDLVTIFQRVKE--MPAPGPVLIHVVTEKGKGYPPAEAAA-------DRM--HGVV------------KFDP 452 (654)
Q Consensus 396 g~vDGhDi~~L~~al~~ak~--~~~~gP~lI~v~T~KG~G~~~ae~~~-------~~~--Hg~~------------~f~~ 452 (654)
.|||||++++++++++|.+ ...++|++|++.|+|++|++..+... ..| |.-+ .++.
T Consensus 594 -~VdG~D~~av~~a~~~A~~~~r~~~~PvlIe~~tyR~~GHs~~D~p~~~~~~~~~~~~~~~dpi~~~~~~L~~~G~~t~ 672 (1113)
T 2xt6_A 594 -HVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDPSMTQPYMYDVIDTKRGSRKAYTEALIGRGDISM 672 (1113)
T ss_dssp -EEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCSCSSTTCCGGGTCHHHHHHHTTCCCHHHHHHHHHHHHTSSCH
T ss_pred -EEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeEccCCcCCCCccccCChHHHHHHHhcCCHHHHHHHHHHHcCCCCH
Confidence 8999999999999988754 12379999999999999998654210 011 1100 0000
Q ss_pred cc------------------ccc--c-c------------------------------------CC-----CC-chhH--
Q 006251 453 KT------------------GKQ--F-K------------------------------------TK-----SP-TLTY-- 467 (654)
Q Consensus 453 ~t------------------g~~--~-~------------------------------------~~-----~~-~~s~-- 467 (654)
+. .+. . + ++ .. ...+
T Consensus 673 ee~~~i~~e~~~~v~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~l~~~~~~~~~~p~~~~~~~~v~~~~~~ 752 (1113)
T 2xt6_A 673 KEAEDALRDYQGQLERVFNEVRELEKHEIEPSESVEADQQIPSKLATAVDKAMLQRIGDAHLALPEGFTVHPRVRPVLEK 752 (1113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------CCCCCCHHHHHHHHHHTTCCCTTCCCCTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccCCCCccCHHHHHHHHHhhccCCcccccchhHHHHHHH
Confidence 00 000 0 0 00 00 0000
Q ss_pred HHH------HHHHHHH------HHhhCCcEEEEecCccCCC------------------ChhhH------HH-hCCCCcc
Q 006251 468 TQY------FAESLIK------EAETDDKIVAIHAAMGGGT------------------GLNYF------QK-RFPDRCF 510 (654)
Q Consensus 468 ~~a------~~~aL~~------~~~~d~~vvvl~aDlg~s~------------------~l~~f------~~-~fp~R~i 510 (654)
+.. +..++.+ +++++++|+++++|++.++ .+++| .+ .+|+||+
T Consensus 753 r~~m~~~~~i~~a~~e~la~~~ll~~~~~V~l~GeDv~rgtfs~rh~v~~d~~~g~~~~~l~~l~~~~~~~~~~~p~rv~ 832 (1113)
T 2xt6_A 753 RREMAYEGRIDWAFAELLALGSLIAEGKLVRLSGQDTQRGTFTQRHAVIVDRKTGEEFTPLQLLATNPDGTPTGGKFLVY 832 (1113)
T ss_dssp HHHHHHHCCBCHHHHHHHHHHHHHHTTCEEEEEETTTTTCTTSCCCSSEECTTTCCEECGGGGGGBCTTSCBCSCEEEEE
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHHhcCCCEEEEcccCCCccchhcchheecccCCceecchhccccccccchhcCCcEEE
Confidence 101 1123333 4899999999999998754 36788 66 5699999
Q ss_pred ccchhHHHHHHHHHHHHhcC--CeeEEee-hHHHHHhH---HHHHHHhh---hcCCCCEEEEEecCCccCCCCCCCCC--
Q 006251 511 DVGIAEQHAVTFAAGLASEG--VKPFCAI-YSSFLQRG---YDQVVHDV---DLQKLPVRFAMDRAGLVGADGPTHCG-- 579 (654)
Q Consensus 511 d~GIaE~~mvg~AaGlA~~G--~~Pi~~t-fa~Fl~ra---~dQI~~~~---a~~~lpV~~v~~~~G~~g~dG~tHq~-- 579 (654)
|+||+|++++|+|+|||+.| .+|+++. |++|+.+| +||+++++ ..+++||+++++++| .| +|++||+
T Consensus 833 ds~IsE~~~vg~a~G~A~~G~~~~~i~Eaqf~dF~~~aQ~~~DQ~i~~~~~k~~~~~~vv~~lp~G~-~G-~G~~Hs~~~ 910 (1113)
T 2xt6_A 833 NSALSEFAAVGFEYGYSVGNPDAMVLWEAQFGDFVNGAQSIIDEFISSGEAKWGQLSDVVLLLPHGH-EG-QGPDHTSGR 910 (1113)
T ss_dssp ECCSCSHHHHHHHHHHHHHCTTSEEEEECSSGGGGGGGHHHHHHTTTTHHHHHCCCCCCEEEEECCC-SS-SCTTSSCCC
T ss_pred ECCCCHHHHHHHHHHHHhcCCCCceEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCCEEEEeCCCC-CC-CChhhhccc
Confidence 99999999999999999999 5567776 99999887 99999887 367999999999887 67 9999999
Q ss_pred hhhHHHHhcCCCCEEEecCCHHHHHHHHHHHHhCC-CCcEEEEecCCCCC-CccCCCC----CCCCCcccCceEE
Q 006251 580 AFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVID-DRPSCFRFPRGNGI-GAVLPPN----NKGTPLETSLDSW 648 (654)
Q Consensus 580 ~edla~~r~iPnl~V~~PsD~~E~~~ll~~al~~~-~~P~~ir~~r~~~~-~~~~p~~----~~~~~~~iGKa~v 648 (654)
.|++..|+++|||+|++|+|+.|++++|++++..+ ++|++|++||..+. +..+++. .+.+..++||+++
T Consensus 911 ~E~~l~l~~~pnm~V~~Ps~~~~~~~lLr~a~~~~~~~Pvii~~pk~L~R~~~~~~~~~~~~~~~f~~~ig~~~~ 985 (1113)
T 2xt6_A 911 IERFLQLWAEGSMTIAMPSTPANYFHLLRRHGKDGIQRPLIVFTPKSMLRNKAAVSDIRDFTESKFRSVLEEPMY 985 (1113)
T ss_dssp HHHHHHHCCTTSCEEECCSSHHHHHHHHHHHHHSSCCCCEEEEECSGGGSCSSSCBCHHHHHSCCCCSEECCHHH
T ss_pred HHHHHhcCCCCCcEEEecCCHHHHHHHHHHHHhccCCCCEEEEechHHhCCCCCCCcccccCCCCccccCCccee
Confidence 66665669999999999999999999999987653 48999999998532 1122210 0124448899876
No 19
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=100.00 E-value=8.3e-40 Score=352.88 Aligned_cols=219 Identities=21% Similarity=0.273 Sum_probs=146.7
Q ss_pred EeecCCCCCh-hhcCccccccccCCCCcccccccC-C--CCchhHHHHHHHHHHHHHhhCCcEEEEecCccCCC----Ch
Q 006251 427 VTEKGKGYPP-AEAAADRMHGVVKFDPKTGKQFKT-K--SPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGT----GL 498 (654)
Q Consensus 427 ~T~KG~G~~~-ae~~~~~~Hg~~~f~~~tg~~~~~-~--~~~~s~~~a~~~aL~~~~~~d~~vvvl~aDlg~s~----~l 498 (654)
.|.||+||.| +|.+.++||...+| ++||+..+. . +...+|+++|+++|.+++++|++|+++++|++.+. .+
T Consensus 10 ~t~kg~g~~~~a~~~~~~~h~~~pf-~~~g~~~~~~~~~m~~~~~~~a~~~aL~~l~~~d~~vv~~~~D~~~~~g~~~~~ 88 (369)
T 1ik6_A 10 LVPRGSGMKETAAAKFERNHMDSPD-LGTDDDDKMVAGVVMMANMAKAINMALHEEMERDERVVVLGEDVGKKGGVFLVT 88 (369)
T ss_dssp -----------------------------------CCSCEEEECHHHHHHHHHHHHHHHCTTEEEEEC---------CTT
T ss_pred CCCCCCCCCcchhhchhhhcccCCc-CCCCCcccccccccCcccHHHHHHHHHHHHHccCCCEEEECCcccccCCcchhH
Confidence 6999999999 99999999999999 999975433 1 24678999999999999999999999999998332 26
Q ss_pred hhHHHhC-CCCccccchhHHHHHHHHHHHHhcCCeeEEe-ehHHHHHhHHHHHHHhhhcC--------CCCEEEEEecCC
Q 006251 499 NYFQKRF-PDRCFDVGIAEQHAVTFAAGLASEGVKPFCA-IYSSFLQRGYDQVVHDVDLQ--------KLPVRFAMDRAG 568 (654)
Q Consensus 499 ~~f~~~f-p~R~id~GIaE~~mvg~AaGlA~~G~~Pi~~-tfa~Fl~ra~dQI~~~~a~~--------~lpV~~v~~~~G 568 (654)
+.|+++| |+||||+||+||+|+++|+|||++|++||++ +|++|++|++|||++++|++ ++||+++++++|
T Consensus 89 ~~~~~~~gp~r~~d~gIaE~~~v~~a~G~A~~G~rpv~~~tf~~Fl~~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg 168 (369)
T 1ik6_A 89 EGLYERFGPERVIDTPLNEGGILGFAMGMAMAGLKPVAEIQFVDFIWLGADELLNHIAKLRYRSGGNYKAPLVVRTPVGS 168 (369)
T ss_dssp TTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEECCCC----CCHHHHHHHHHHHHC------CCCCEEEEEECC
T ss_pred HHHHHHhCCCcEEECcccHHHHHHHHHHHHHCCCeeEEEecchhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCC
Confidence 8999999 9999999999999999999999999999998 59999999999999999977 999999999998
Q ss_pred ccCCCCCCCCChhhHHHHhcCCCCEEEecCCHHHHHHHHHHHHhCCCCcEEEEecCCCCCC--ccCCCCCCCCCcccCce
Q 006251 569 LVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIG--AVLPPNNKGTPLETSLD 646 (654)
Q Consensus 569 ~~g~dG~tHq~~edla~~r~iPnl~V~~PsD~~E~~~ll~~al~~~~~P~~ir~~r~~~~~--~~~p~~~~~~~~~iGKa 646 (654)
.+| +|+|||+.++ ++|+++|||+|++|+|++|+++++++|++ .++|++||+||..... ..+|. +++.+++||+
T Consensus 169 ~~g-~g~~hs~~~~-a~l~~iPnl~V~~Psd~~e~~~ll~~A~~-~~~Pv~i~~p~~l~r~~~~~v~~--~~~~~~~G~~ 243 (369)
T 1ik6_A 169 GTR-GGLYHSNSPE-AIFVHTPGLVVVMPSTPYNAKGLLKAAIR-GDDPVVFLEPKILYRAPREEVPE--GDYVVEIGKA 243 (369)
T ss_dssp ------------HH-HHHHTCTTCEEECCCSHHHHHHHHHHHHH-SSSCEEEEEEGGGSSCCCEEEEC--SSCCCCTTCC
T ss_pred CCC-CCccccccHH-HHHcCCCCcEEEecCCHHHHHHHHHHHHh-CCCCEEEEEehhhhccCCCCcCC--CcccccCCce
Confidence 766 8999999875 99999999999999999999999999986 7899999999876421 23332 3467899999
Q ss_pred EEecc
Q 006251 647 SWPMS 651 (654)
Q Consensus 647 ~vi~~ 651 (654)
+++++
T Consensus 244 ~v~~~ 248 (369)
T 1ik6_A 244 RVARE 248 (369)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 98864
No 20
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=100.00 E-value=1.6e-33 Score=301.02 Aligned_cols=186 Identities=19% Similarity=0.269 Sum_probs=161.9
Q ss_pred CchhHHHHHHHHHHHHHhhCCcEEEEecCccC--C-C-ChhhHHHhC-CCCccccchhHHHHHHHHHHHHhcCCeeEEe-
Q 006251 463 PTLTYTQYFAESLIKEAETDDKIVAIHAAMGG--G-T-GLNYFQKRF-PDRCFDVGIAEQHAVTFAAGLASEGVKPFCA- 536 (654)
Q Consensus 463 ~~~s~~~a~~~aL~~~~~~d~~vvvl~aDlg~--s-~-~l~~f~~~f-p~R~id~GIaE~~mvg~AaGlA~~G~~Pi~~- 536 (654)
.+.+|+++++++|.+++++|++|+++++|++. + + .+++|+++| |+||||+||+||+|+++|+|||++|++||++
T Consensus 13 ~~~~~~~a~~~~L~~l~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~gp~r~~d~gIaE~~~v~~a~G~A~~G~rp~~~~ 92 (341)
T 2ozl_B 13 LQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEF 92 (341)
T ss_dssp CEEEHHHHHHHHHHHHHHHCTTEEEEETTSSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred ccccHHHHHHHHHHHHHhhCCCEEEECCcccccCCcchhHHHHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEEe
Confidence 35789999999999999999999999999983 2 2 268899999 9999999999999999999999999999999
Q ss_pred ehHHHHHhHHHHHHHhhhc--------CCCCEEEEEecCCccCCCCCCCCChhhHHHHhcCCCCEEEecCCHHHHHHHHH
Q 006251 537 IYSSFLQRGYDQVVHDVDL--------QKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVA 608 (654)
Q Consensus 537 tfa~Fl~ra~dQI~~~~a~--------~~lpV~~v~~~~G~~g~dG~tHq~~edla~~r~iPnl~V~~PsD~~E~~~ll~ 608 (654)
+|++|++|++|||++++|+ +++||++++++ |+.|.||+|||+..| ++|+++|||+|++|+|+.|++.+++
T Consensus 93 ~f~~F~~~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~-G~~g~~G~tHs~~~e-a~l~~iP~l~V~~Psd~~e~~~~l~ 170 (341)
T 2ozl_B 93 MTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPN-GASAGVAAQHSQCFA-AWYGHCPGLKVVSPWNSEDAKGLIK 170 (341)
T ss_dssp SSGGGGGGGHHHHHTTTTTHHHHTTSSCCCCCEEEEEC-SCCSSCCGGGCCCCH-HHHHTSTTCEEECCCSHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhccccCCCCEEEEEcC-cCCCCCCcchhhHHH-HHhccCCCCEEEEeCCHHHHHHHHH
Confidence 5999999999999999983 99999999997 678889999988778 8999999999999999999999999
Q ss_pred HHHhCCCCcEEEEecCCCCC-CccC-CC-CCCCCCcccCceEEecc
Q 006251 609 TAAVIDDRPSCFRFPRGNGI-GAVL-PP-NNKGTPLETSLDSWPMS 651 (654)
Q Consensus 609 ~al~~~~~P~~ir~~r~~~~-~~~~-p~-~~~~~~~~iGKa~vi~~ 651 (654)
+|++ .++|++||++|+... ...+ |. ..+++.+++||++++++
T Consensus 171 ~a~~-~~~Pv~i~~~~~~~~~~~~v~p~~~~~~~~~~~Gk~~v~~~ 215 (341)
T 2ozl_B 171 SAIR-DNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQ 215 (341)
T ss_dssp HHHH-SSSCEEEEECHHHHTCEEECCHHHHSTTCCCCTTCCEEEEC
T ss_pred HHHh-cCCCEEEEEChhhhcCCCCcCCccCCccccccCCceEEecc
Confidence 9986 589999999987421 1112 10 12356889999998764
No 21
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=100.00 E-value=9.5e-34 Score=302.77 Aligned_cols=197 Identities=16% Similarity=0.225 Sum_probs=161.8
Q ss_pred CCCcccccccCCCCchhHHHHHHHHHHHHHhhCCcEEEEecCccCC--C-ChhhHHHhC-CCCccccchhHHHHHHHHHH
Q 006251 450 FDPKTGKQFKTKSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGG--T-GLNYFQKRF-PDRCFDVGIAEQHAVTFAAG 525 (654)
Q Consensus 450 f~~~tg~~~~~~~~~~s~~~a~~~aL~~~~~~d~~vvvl~aDlg~s--~-~l~~f~~~f-p~R~id~GIaE~~mvg~AaG 525 (654)
||+.++.+.....++.+|+++++++|.+++++|++|+++++|++.+ + .+++|+++| |+||+|+||+|++|+++|+|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~a~~~aL~~l~~~~~~vv~~~~D~~~~gt~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G 85 (342)
T 2bfd_B 6 FQPDPEPREYGQTQKMNLFQSVTSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIG 85 (342)
T ss_dssp --------CCSCEEEECHHHHHHHHHHHHHHHCTTCEEEETTTTTTCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHH
T ss_pred eCCCCCCCCCCccCCccHHHHHHHHHHHHHhcCCCEEEEcCccCCCcccchHHHHHHHhCCCeEEEcCcCHHHHHHHHHH
Confidence 4455444322233457899999999999999999999999999731 1 358899999 99999999999999999999
Q ss_pred HHhcCCeeEEe-ehHHHHHhHHHHHHHhhhcCCC---------CEEEEEecCCccCCCCCCCCChhhHHHHhcCCCCEEE
Q 006251 526 LASEGVKPFCA-IYSSFLQRGYDQVVHDVDLQKL---------PVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVM 595 (654)
Q Consensus 526 lA~~G~~Pi~~-tfa~Fl~ra~dQI~~~~a~~~l---------pV~~v~~~~G~~g~dG~tHq~~edla~~r~iPnl~V~ 595 (654)
+|++|++||++ +|++|++|++|||++++|++++ ||+++++++| +.||+|||+.+|+++||++|||+|+
T Consensus 86 ~A~~G~rp~~~~tf~~F~~~a~dqi~~~~a~~~~~~~g~~~~~pvv~~~~~~g--~~~G~th~~~~d~~~l~~iP~l~V~ 163 (342)
T 2bfd_B 86 IAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGC--VGHGALYHSQSPEAFFAHCPGIKVV 163 (342)
T ss_dssp HHHTTCCEEEECSSGGGCGGGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEESC--CSSCGGGSSCCCHHHHHTSTTCEEE
T ss_pred HHHCCCeeEEEecchhHHHHHHHHHHHHHHHHHhhhcCCccCCCEEEEEecCC--CCCCcchhhHhHHHHHhcCCCcEEE
Confidence 99999999998 6999999999999999996554 9999999887 3589999999999999999999999
Q ss_pred ecCCHHHHHHHHHHHHhCCCCcEEEEecCCCCCC--ccCCCCCCCCCcccCceEEecc
Q 006251 596 APSDEAELMHMVATAAVIDDRPSCFRFPRGNGIG--AVLPPNNKGTPLETSLDSWPMS 651 (654)
Q Consensus 596 ~PsD~~E~~~ll~~al~~~~~P~~ir~~r~~~~~--~~~p~~~~~~~~~iGKa~vi~~ 651 (654)
+|+|+.|++.++++|+. +++|++||+++..... ..+|. +++.+++||++++++
T Consensus 164 ~Psd~~e~~~~l~~a~~-~~~Pv~i~~p~~l~r~~~~~~~~--~~~~~~~G~~~v~~~ 218 (342)
T 2bfd_B 164 IPRSPFQAKGLLLSCIE-DKNPCIFFEPKILYRAAAEEVPI--EPYNIPLSQAEVIQE 218 (342)
T ss_dssp CCSSHHHHHHHHHHHHH-SSSCEEEEEEGGGTTSCCEEEES--SCCCCCSSCCEEEEC
T ss_pred eeCCHHHHHHHHHHHHh-cCCcEEEEecchhcCCCCCCCCC--cccceeCCceEEecc
Confidence 99999999999999986 5899999888543211 12332 346789999998764
No 22
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=100.00 E-value=6.5e-33 Score=294.16 Aligned_cols=182 Identities=19% Similarity=0.226 Sum_probs=160.8
Q ss_pred hhHHHHHHHHHHHHHhhCCcEEEEecCccCCCC----hhhHHHhC-CCCccccchhHHHHHHHHHHHHhcCCeeEEe-eh
Q 006251 465 LTYTQYFAESLIKEAETDDKIVAIHAAMGGGTG----LNYFQKRF-PDRCFDVGIAEQHAVTFAAGLASEGVKPFCA-IY 538 (654)
Q Consensus 465 ~s~~~a~~~aL~~~~~~d~~vvvl~aDlg~s~~----l~~f~~~f-p~R~id~GIaE~~mvg~AaGlA~~G~~Pi~~-tf 538 (654)
++|+++|+++|.+++++|++|+++++|++.+.+ +++|+++| |+||+|+||+|++|+++|+|+|++|++||++ +|
T Consensus 3 ~~~~~a~~~~L~~l~~~~~~vv~~~~d~~~~~g~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G~A~~G~rp~~~~t~ 82 (324)
T 1w85_B 3 MTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESGIGGLAIGLALQGFRPVPEIQF 82 (324)
T ss_dssp ECHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEBCSS
T ss_pred chHHHHHHHHHHHHHhHCcCEEEEcCcccccCCcchhHHHHHHHhCCCcEEEcchhHHHHHHHHHHHHhCCCEEEEEecc
Confidence 579999999999999999999999999985333 48999999 9999999999999999999999999999998 59
Q ss_pred HHHHHhHHHHHHHhhhc--------CCCCEEEEEecCCccCCCCCCCCChhhHHHHhcCCCCEEEecCCHHHHHHHHHHH
Q 006251 539 SSFLQRGYDQVVHDVDL--------QKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATA 610 (654)
Q Consensus 539 a~Fl~ra~dQI~~~~a~--------~~lpV~~v~~~~G~~g~dG~tHq~~edla~~r~iPnl~V~~PsD~~E~~~ll~~a 610 (654)
++|++|++|||++++|+ +++||+++.++ |..+.+|++||+ +|.++|+++|||+|++|+|+.|+++++++|
T Consensus 83 ~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~~-g~~~~~g~~hs~-~~~a~~~~iP~l~V~~Psd~~e~~~~l~~a 160 (324)
T 1w85_B 83 FGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSPF-GGGVHTPELHSD-SLEGLVAQQPGLKVVIPSTPYDAKGLLISA 160 (324)
T ss_dssp GGGGGGTHHHHHTTGGGHHHHTTTSSCCCCEEEEEE-CSSSCCCTTSSC-CCHHHHTTSTTCEEECCSSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhhhccCCCcCCEEEEEec-cCCCCCCCcccc-cHHHHHccCCCCEEEeeCCHHHHHHHHHHH
Confidence 99999999999999997 89999999875 546778889998 777999999999999999999999999999
Q ss_pred HhCCCCcEEEEecCCCCCC--ccCCCCCCCCCcccCceEEecc
Q 006251 611 AVIDDRPSCFRFPRGNGIG--AVLPPNNKGTPLETSLDSWPMS 651 (654)
Q Consensus 611 l~~~~~P~~ir~~r~~~~~--~~~p~~~~~~~~~iGKa~vi~~ 651 (654)
++ +++|++||++|..... ..+|. +++.+++||++++++
T Consensus 161 ~~-~~~Pv~i~~p~~l~r~~~~~~~~--~~~~~~~Gk~~~~~~ 200 (324)
T 1w85_B 161 IR-DNDPVIFLEHLKLYRSFRQEVPE--GEYTIPIGKADIKRE 200 (324)
T ss_dssp HH-SSSCEEEEEETTTSSSCCEECCS--SCCCCCTTCCEEEEC
T ss_pred HH-cCCCEEEEechHhcCCCCCCCCC--ccccccCCceEEEec
Confidence 86 7899999999876421 23332 346789999998864
No 23
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=100.00 E-value=1e-32 Score=292.62 Aligned_cols=183 Identities=21% Similarity=0.318 Sum_probs=161.1
Q ss_pred chhHHHHHHHHHHHHHhhCCcEEEEecCccCCCC----hhhHHHhC-CCCccccchhHHHHHHHHHHHHhcCCeeEEe-e
Q 006251 464 TLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTG----LNYFQKRF-PDRCFDVGIAEQHAVTFAAGLASEGVKPFCA-I 537 (654)
Q Consensus 464 ~~s~~~a~~~aL~~~~~~d~~vvvl~aDlg~s~~----l~~f~~~f-p~R~id~GIaE~~mvg~AaGlA~~G~~Pi~~-t 537 (654)
+.+|+++++++|.+++++|++|+++++|++.+.+ +++|+++| |+||||+||+|++|+++|+|+|++|++||++ +
T Consensus 3 ~~~~~~a~~~~l~~l~~~~~~vv~~~~D~~~~~g~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G~A~~G~~p~~~~t 82 (324)
T 1umd_B 3 LMTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAIVGAALGMAAHGLRPVAEIQ 82 (324)
T ss_dssp EECHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHHTCEEEEECS
T ss_pred CCcHHHHHHHHHHHHHhcCCCEEEECCcccccCCcchhhHHHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEEec
Confidence 4689999999999999999999999999985333 48899999 9999999999999999999999999999998 5
Q ss_pred hHHHHHhHHHHHHHhhhc--------CCCCEEEEEecCCccCCCCCCCCChhhHHHHhcCCCCEEEecCCHHHHHHHHHH
Q 006251 538 YSSFLQRGYDQVVHDVDL--------QKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVAT 609 (654)
Q Consensus 538 fa~Fl~ra~dQI~~~~a~--------~~lpV~~v~~~~G~~g~dG~tHq~~edla~~r~iPnl~V~~PsD~~E~~~ll~~ 609 (654)
|++|++|++|||++++|+ +++||+++.++ |+.+.+|++||+ +|+++|+++|||+|++|+|+.|++.++++
T Consensus 83 ~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~~-g~~~~~g~~hs~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~ 160 (324)
T 1umd_B 83 FADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMPS-GGGVRGGHHHSQ-SPEAHFVHTAGLKVVAVSTPYDAKGLLKA 160 (324)
T ss_dssp SGGGCGGGHHHHHHTTTTHHHHTTTSSCCCCEEEEEE-CSSSSCGGGSSC-CCHHHHHTSTTCEEEECCSHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHhhcCCCCcCCEEEEEcC-CCCCCCCCccch-hHHHHHhcCCCCEEEEeCCHHHHHHHHHH
Confidence 999999999999999997 89999999885 546778999998 78899999999999999999999999999
Q ss_pred HHhCCCCcEEEEecCCCCC--CccCCCCCCCCCcccCceEEecc
Q 006251 610 AAVIDDRPSCFRFPRGNGI--GAVLPPNNKGTPLETSLDSWPMS 651 (654)
Q Consensus 610 al~~~~~P~~ir~~r~~~~--~~~~p~~~~~~~~~iGKa~vi~~ 651 (654)
+++ +++|++||++|.... ..++|. +++.+++||++++++
T Consensus 161 a~~-~~~Pv~i~~p~~l~~~~~~~~~~--~~~~~~~Gk~~~~~~ 201 (324)
T 1umd_B 161 AIR-DEDPVVFLEPKRLYRSVKEEVPE--EDYTLPIGKAALRRE 201 (324)
T ss_dssp HHH-CSSCEEEEEEGGGSSSCCEECCS--SCCCCCTTCCEEEEC
T ss_pred HHh-cCCCEEEEechHhcCCCCCCcCC--CCccccCCcceEEec
Confidence 985 789999999887642 123332 346789999998764
No 24
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=100.00 E-value=7.7e-33 Score=295.13 Aligned_cols=183 Identities=19% Similarity=0.266 Sum_probs=160.0
Q ss_pred chhHHHHHHHHHHHHHhhCCcEEEEecCccCCC----ChhhHHHhC-CCCccccchhHHHHHHHHHHHHhcCCeeEEe-e
Q 006251 464 TLTYTQYFAESLIKEAETDDKIVAIHAAMGGGT----GLNYFQKRF-PDRCFDVGIAEQHAVTFAAGLASEGVKPFCA-I 537 (654)
Q Consensus 464 ~~s~~~a~~~aL~~~~~~d~~vvvl~aDlg~s~----~l~~f~~~f-p~R~id~GIaE~~mvg~AaGlA~~G~~Pi~~-t 537 (654)
+.+|+++++++|.+++++|++|+++++|++.+. .+++|+++| |+||||+||+|++|+++|+|+|++|++||++ +
T Consensus 4 ~~~~~~a~~~~l~~l~~~~~~vv~~~~D~~~~~g~~~~~~~~~~~~gp~r~~~~gisE~~~~~~a~G~A~~G~rp~~~~t 83 (338)
T 1qs0_B 4 TMTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPISESGIVGTAVGMGAYGLRPVVEIQ 83 (338)
T ss_dssp ECCHHHHHHHHHHHHHHHCTTEEEEETTCSSSCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHHTCEEEEECS
T ss_pred cchHHHHHHHHHHHHHhhCCCEEEECCcccccCCcchhHHHHHHHhCCCcEEEccccHHHHHHHHHHHHhCCCEEEEEec
Confidence 468999999999999999999999999998533 368999999 9999999999999999999999999999998 6
Q ss_pred hHHHHHhHHHHHHHhhhcCC--------CCEEEEEecCCccCCCCCCCCChhhHHHHhcCCCCEEEecCCHHHHHHHHHH
Q 006251 538 YSSFLQRGYDQVVHDVDLQK--------LPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVAT 609 (654)
Q Consensus 538 fa~Fl~ra~dQI~~~~a~~~--------lpV~~v~~~~G~~g~dG~tHq~~edla~~r~iPnl~V~~PsD~~E~~~ll~~ 609 (654)
|++|++|++|||++++|+++ +||+++++++| +.||++||+.+|+++||++|||+|++|+|++|++.++++
T Consensus 84 ~~~F~~~a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~~g--~~~G~th~s~~d~~~l~~iP~l~V~~Psd~~e~~~~l~~ 161 (338)
T 1qs0_B 84 FADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPCGG--GIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIA 161 (338)
T ss_dssp CGGGCGGGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECC--SSSCCSSSSCCCHHHHTTSTTCEEECCCSHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEEeCCC--CCCCcccccccHHHHHhcCCCCEEEeeCCHHHHHHHHHH
Confidence 99999999999999999655 99999999887 679999999999999999999999999999999999999
Q ss_pred HHhCCCCcEEEEec----CCCCC---Cc-----------cCCCCCCCCCcccCceEEecc
Q 006251 610 AAVIDDRPSCFRFP----RGNGI---GA-----------VLPPNNKGTPLETSLDSWPMS 651 (654)
Q Consensus 610 al~~~~~P~~ir~~----r~~~~---~~-----------~~p~~~~~~~~~iGKa~vi~~ 651 (654)
|++ .++|++||++ |+..+ .. .++. +++.+++||++++++
T Consensus 162 A~~-~~~Pv~i~~p~~l~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~gk~~~~~~ 218 (338)
T 1qs0_B 162 SIE-CDDPVIFLEPKRLYNGPFDGHHDRPVTPWSKHPHSAVPD--GYYTVPLDKAAITRP 218 (338)
T ss_dssp HHH-SSSCEEEEEEGGGSSSCCCSCSSSCCCCSTTSTTCEEES--SCCCCCTTCCCEEEC
T ss_pred HHh-cCCcEEEEEchHhhcCcccccccCccchhhcccccccCC--CCcccccCceeEecC
Confidence 986 5899999887 44322 00 1221 346788999988764
No 25
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=99.97 E-value=3.9e-29 Score=269.54 Aligned_cols=230 Identities=17% Similarity=0.118 Sum_probs=180.8
Q ss_pred cCCCCHHHHHH---HHHHHHHHHHHHhhc-cCCCCCCCc---cHHHHHHHHHhhcCCCCcEEEecCCchHHHHHHHcCCh
Q 006251 152 MKNLSTEDLEQ---LAAELRADIVNSVSK-TGGHLSANL---GVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILTGRR 224 (654)
Q Consensus 152 ~~~l~~~~L~~---la~~lR~~il~~v~~-~~GH~gssl---g~vel~~aL~~v~~~p~Dr~I~s~GH~aY~~~~l~Gr~ 224 (654)
.++++.++|.+ .+.++|....+++.+ ++||+|.++ |+..+++++...++..+|+|+++ |+.|+|++++|..
T Consensus 30 ~~~l~~~~l~~l~~~m~~~R~~~~~~~~~~~~G~~g~~~~~~G~ea~~~~~~~~l~~~rD~i~~s--~r~~~~~~~~G~~ 107 (367)
T 1umd_A 30 PLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAIAHAIRPGFDWVFPY--YRDHGLALALGIP 107 (367)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCCCCCTTCHHHHHHHHHHSCTTTSEEECC--TTTHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCCCCcCHHHHHHHHHHHcCCCCcEEEeC--cHHHHHHHHcCCC
Confidence 46788887776 678899999999875 789987664 55556666767776556999986 8899999999984
Q ss_pred --HHHHHHHhc------C-CCCCCCCCCCCCccccCcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHH
Q 006251 225 --SRMNTMRKT------S-GLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEA 295 (654)
Q Consensus 225 --~~l~~lrq~------g-gl~G~p~~~es~~~~fg~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EA 295 (654)
+.|.+|++. | +.++||...+ .+...++|++|+++|.|+|+|+|.++.+++++|||++|||++++|++|||
T Consensus 108 ~~~~l~~~~g~~~g~~~G~~~~~h~~~~~-~~~~~~~g~lG~~l~~a~G~A~a~k~~~~~~~vv~i~GDGa~~~G~~~Ea 186 (367)
T 1umd_A 108 LKELLGQMLATKADPNKGRQMPEHPGSKA-LNFFTVASPIASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAG 186 (367)
T ss_dssp HHHHHHHHHTBTTCTTTTCSCSSCCCBTT-TTBCCCCSSTTTTHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHH
T ss_pred HHHHHHHHhCCCCCCCCCCCCCCCCcccc-cCcCCCCchhhhhhhHHHHHHHHHHHhCCCCeEEEEEcccccccCcHHHH
Confidence 788899873 3 2566774322 23345789999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCEEEEEECCCCCcccccccCCCCCchhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHh
Q 006251 296 MNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYA 375 (654)
Q Consensus 296 ln~A~~~~lnLi~Il~dN~~~s~pt~~~~g~~~~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~ 375 (654)
||+|+.+++|+++||+||++.+. + +...
T Consensus 187 l~~A~~~~lpvi~vv~NN~~gi~------~---~~~~------------------------------------------- 214 (367)
T 1umd_A 187 INFAAVQGAPAVFIAENNFYAIS------V---DYRH------------------------------------------- 214 (367)
T ss_dssp HHHHHHTTCSEEEEEEECSEETT------E---EHHH-------------------------------------------
T ss_pred HHHHHHhCcCEEEEEecCCeeec------c---Chhh-------------------------------------------
Confidence 99999999999999999995321 0 0000
Q ss_pred hhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHHHHhHh--CCCCCCEEEEEEeecCCCCChhh
Q 006251 376 RGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKE--MPAPGPVLIHVVTEKGKGYPPAE 438 (654)
Q Consensus 376 r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al~~ak~--~~~~gP~lI~v~T~KG~G~~~ae 438 (654)
..-..+...++++|||+++ .|||+|+.+++++++++.+ ...++|++|++.|.|++|++.+.
T Consensus 215 -~~~~~d~~~~a~a~G~~~~-~Vdg~d~~av~~a~~~A~~~a~~~~gP~lIe~~t~r~~Ghs~~D 277 (367)
T 1umd_A 215 -QTHSPTIADKAHAFGIPGY-LVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYRYGPHSSAD 277 (367)
T ss_dssp -HCSSSCSGGGGGGTTSCEE-EEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCCSCSSTTC
T ss_pred -ccCCCCHHHHHHHcCCcEE-EeCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeecCCCCCCCC
Confidence 0001122456999999999 8999999999988877653 22479999999999999998764
No 26
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=99.93 E-value=1.3e-24 Score=234.20 Aligned_cols=224 Identities=21% Similarity=0.207 Sum_probs=168.7
Q ss_pred ccCCCCHHHHHHHHHHH---HHHHHH---Hhhc-cCCCCCCCccHHHHHHHHHhhcCCCCcEEEecCCchHHHHHHHcCC
Q 006251 151 HMKNLSTEDLEQLAAEL---RADIVN---SVSK-TGGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILTGR 223 (654)
Q Consensus 151 ~~~~l~~~~L~~la~~l---R~~il~---~v~~-~~GH~gsslg~vel~~aL~~v~~~p~Dr~I~s~GH~aY~~~~l~Gr 223 (654)
...+++.++|.++.+.+ |..--+ ...+ .-||++++.|+..+.+++...++ |+|.++.. |+.++|.+..|.
T Consensus 37 ~~~~l~~e~l~~~y~~M~~~R~fe~~~~~~~~qgr~g~~~~~~G~Ea~~vg~~~~l~-~~D~v~~~--~R~~~~~~~~G~ 113 (368)
T 1w85_A 37 AMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLGFYAPTAGQEASQIASHFALE-KEDFILPG--YRDVPQIIWHGL 113 (368)
T ss_dssp GCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSCCCCTTCHHHHHHHHHTCC-TTCEEECC--SSCHHHHHHTTC
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCCHHHHHHHHHHhcC-CcCEEEec--chhHHHHHhcCC
Confidence 34578888888877544 544222 2222 33888899999988888877774 78987765 777778888887
Q ss_pred h--HHHHHHHhc--CCCCCCCCCCCCCccccCcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHH
Q 006251 224 R--SRMNTMRKT--SGLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNA 299 (654)
Q Consensus 224 ~--~~l~~lrq~--ggl~G~p~~~es~~~~fg~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A 299 (654)
. ..|.++... |+ +-|++ .+...+.|++|+++|+|+|+|+|.++++++++|||++|||++++|++||+||+|
T Consensus 114 ~~~~~~~el~G~~~G~-~~h~~----~~~~~~~g~lG~~lp~AvG~A~A~~~~~~~~~vv~i~GDGa~~~G~~~Eal~~A 188 (368)
T 1w85_A 114 PLYQAFLFSRGHFHGN-QIPEG----VNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFA 188 (368)
T ss_dssp CHHHHHHHHHTCGGGG-CCCTT----CCBCCCCCSTTHHHHHHHHHHHHHHHTTCSCCEEEEEETGGGGSHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCC-CCCcc----cccCCCccccCccccHHHHHHHHhHhhCCCCeEEEEEchhhhhhcHHHHHHHHH
Confidence 3 445555322 22 11221 234457899999999999999999999999999999999999999999999999
Q ss_pred hhcCCCEEEEEECCCCCc-ccccccCCCCCchhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhc
Q 006251 300 GFLDANLIVVLNDNKQVS-LPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGL 378 (654)
Q Consensus 300 ~~~~lnLi~Il~dN~~~s-~pt~~~~g~~~~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~ 378 (654)
+.+++|+++||+||++.+ +++....
T Consensus 189 ~~~~lpvi~vv~NN~~gi~~~~~~~~------------------------------------------------------ 214 (368)
T 1w85_A 189 GAFKAPAIFVVQNNRFAISTPVEKQT------------------------------------------------------ 214 (368)
T ss_dssp HHTTCCEEEEEEECSEETTEEGGGTC------------------------------------------------------
T ss_pred HHHCcCEEEEEEcCCccceecccccc------------------------------------------------------
Confidence 999999999999998532 2211000
Q ss_pred cCCChhhhhhhcCCeEEeecCCCCHHHHHHHHHHhHh--CCCCCCEEEEEEeecCCCCC-hh
Q 006251 379 ISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKE--MPAPGPVLIHVVTEKGKGYP-PA 437 (654)
Q Consensus 379 ~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al~~ak~--~~~~gP~lI~v~T~KG~G~~-~a 437 (654)
-.++...++++|||+++ .|||||++++.+++++|++ ...++|++|++.|++.+|++ ..
T Consensus 215 ~~~d~~~~a~a~G~~~~-~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~r~~gHs~~~ 275 (368)
T 1w85_A 215 VAKTLAQKAVAAGIPGI-QVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGPHTMSG 275 (368)
T ss_dssp SCSCSGGGGGGTTCCEE-EEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCSSCSCSSC
T ss_pred CCCCHHHHHHHCCCCEE-EEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeeccCCCCCCC
Confidence 00122345999999999 8999999999999998865 22479999999999999998 54
No 27
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=99.93 E-value=8.6e-25 Score=235.24 Aligned_cols=229 Identities=20% Similarity=0.177 Sum_probs=167.6
Q ss_pred CccccCCCCHHHHHHHHHHH---HHHHHHHh-----hccCCCCCCCccHHHHHHHHHhhcCCCCcEEEecCCchHHHHHH
Q 006251 148 YPIHMKNLSTEDLEQLAAEL---RADIVNSV-----SKTGGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKI 219 (654)
Q Consensus 148 ~p~~~~~l~~~~L~~la~~l---R~~il~~v-----~~~~GH~gsslg~vel~~aL~~v~~~p~Dr~I~s~GH~aY~~~~ 219 (654)
.|.+..+++.++|.++.+.+ |+.-.++. .+..|+++++.|+..+.+++...++ |.|.++.+ |+.++|.+
T Consensus 24 ~~~~~~~l~~e~l~~~yr~M~~~R~~e~~~~~l~~~g~i~gf~~~~~GqEa~~vg~~~al~-~~D~i~~~--yR~~~~~~ 100 (365)
T 2ozl_A 24 GPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGIN-PTDHLITA--YRAHGFTF 100 (365)
T ss_dssp CSCSEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCCCCCTTCHHHHHHHHHTSC-TTSEEECC--SCCHHHHH
T ss_pred CccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCCChHHHHHHHHHhhC-CCCEEehH--HHHHHHHH
Confidence 46667778888888777544 43322222 2235899999999888888877774 78987775 88888999
Q ss_pred HcCCh--HHHHHHHhc--C---CCCCCCCCCCCCccccCcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchH
Q 006251 220 LTGRR--SRMNTMRKT--S---GLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQA 292 (654)
Q Consensus 220 l~Gr~--~~l~~lrq~--g---gl~G~p~~~es~~~~fg~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~ 292 (654)
.+|.. +.|.+|... | |.+|..+.. +.....+.|++|+++|+|+|+|+|.+++++++.|||++|||++++|++
T Consensus 101 ~~G~~~~~i~~e~~g~~~g~~~g~gg~~H~~-~~~~~~~~g~~G~~lp~A~G~A~A~~~~~~~~~vv~~~GDGa~~~G~~ 179 (365)
T 2ozl_A 101 TRGLSVREILAELTGRKGGCAKGKGGSMHMY-AKNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQI 179 (365)
T ss_dssp HTTCCHHHHHHHHTTCTTSTTTTSSCTTCCC-BTTBCCCCCSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHH
T ss_pred hcCCCHHHHHHHHcCCCCCCCCCCCCCCCcC-ccccCCCcchhhhhhHHHHHHHHHHHhcCCCceEEEEECchhhhccHH
Confidence 99973 555555221 1 112222211 122223569999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCEEEEEECCCCCc-ccccccCCCCCchhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHH
Q 006251 293 YEAMNNAGFLDANLIVVLNDNKQVS-LPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKV 371 (654)
Q Consensus 293 ~EAln~A~~~~lnLi~Il~dN~~~s-~pt~~~~g~~~~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~ 371 (654)
||+||+|+.+++|+++||+||++.+ +++....
T Consensus 180 ~Ealn~A~~~~lpvi~vv~NN~~g~~t~~~~~~----------------------------------------------- 212 (365)
T 2ozl_A 180 FEAYNMAALWKLPCIFICENNRYGMGTSVERAA----------------------------------------------- 212 (365)
T ss_dssp HHHHHHHHHTTCCEEEEEEECSEETTEEHHHHC-----------------------------------------------
T ss_pred HHHHHHHHHHCcCEEEEEECCCcccCCCccccc-----------------------------------------------
Confidence 9999999999999999999998532 1110000
Q ss_pred HHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHHHHhHh--CCCCCCEEEEEEeecCCCCChh
Q 006251 372 DEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKE--MPAPGPVLIHVVTEKGKGYPPA 437 (654)
Q Consensus 372 ~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al~~ak~--~~~~gP~lI~v~T~KG~G~~~a 437 (654)
-.++.. .+++|++++ .|||||++++.+++++|.+ ...++|++|++.|++..|++..
T Consensus 213 -------~~~~~~--~ra~g~p~~-~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~R~~gHs~~ 270 (365)
T 2ozl_A 213 -------ASTDYY--KRGDFIPGL-RVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHEMS 270 (365)
T ss_dssp -------SCCCGG--GTTTTSCEE-EEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCSSCSSTT
T ss_pred -------CCCCHH--HHhCCCCEE-EEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeecCCCCCCC
Confidence 000111 157899998 7999999999999988754 2357999999999999999854
No 28
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=99.92 E-value=5.2e-24 Score=231.86 Aligned_cols=228 Identities=18% Similarity=0.130 Sum_probs=162.1
Q ss_pred cCCCCHHHHHHHHHH---HHHHHHHHhhc-cC---CCCCCCccHHHHHHHHHhhcCCCCcEEEecCCchHHHHHHHcCC-
Q 006251 152 MKNLSTEDLEQLAAE---LRADIVNSVSK-TG---GHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILTGR- 223 (654)
Q Consensus 152 ~~~l~~~~L~~la~~---lR~~il~~v~~-~~---GH~gsslg~vel~~aL~~v~~~p~Dr~I~s~GH~aY~~~~l~Gr- 223 (654)
..+++.+++.++.+. +|..--++... .. ++..++.|+..+.+++-..+ .++|.++.. |+..++.+.+|.
T Consensus 49 ~~~~~~e~~~~~y~~M~~~r~fe~~~~~~~~~gri~~~~~~~GqEa~~vg~~~al-~~~D~v~~~--yR~~~~~~~~G~~ 125 (400)
T 2bfd_A 49 DPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAAL-DNTDLVFGQ--AREAGVLMYRDYP 125 (400)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCCCTTCHHHHHHHHHTS-CTTSEEECC--SCCHHHHHHTTCC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeecCCChHHHHHHHHHhc-CCCCEEEec--CcCHHHHHHcCCC
Confidence 456888877766633 33332222221 22 45578888877766665444 478988765 555557888887
Q ss_pred -hHHHHHHHhc------C-CCCCCCCCCCCCccccCcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHH
Q 006251 224 -RSRMNTMRKT------S-GLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEA 295 (654)
Q Consensus 224 -~~~l~~lrq~------g-gl~G~p~~~es~~~~fg~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EA 295 (654)
.+.|.+|+.. | +.++|+...+. +...++|++|+++|+|+|+|+|.++++++++|||++|||++++|++||+
T Consensus 126 ~~~~l~e~~g~~~g~~~G~~~~~H~~~~~~-~~~~~~g~lG~~lp~AvG~AlA~~~~~~~~~vv~~~GDGa~~~G~~~Ea 204 (400)
T 2bfd_A 126 LELFMAQCYGNISDLGKGRQMPVHYGCKER-HFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAG 204 (400)
T ss_dssp HHHHHHHHHTCTTCTTTTCSCSSCCCBTTT-TBCCCCSSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHH
T ss_pred HHHHHHHhcCCCCCCCCCCCCCcCCccccc-CccccCccccccccHHHHHHHhhhhhCCCCeEEEEECchhhhcChHHHH
Confidence 4667777664 2 24556543222 2344689999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCEEEEEECCCCCc-ccccccCCCCCchhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHH
Q 006251 296 MNNAGFLDANLIVVLNDNKQVS-LPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEY 374 (654)
Q Consensus 296 ln~A~~~~lnLi~Il~dN~~~s-~pt~~~~g~~~~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~ 374 (654)
||+|+.+++|+++||+||++.+ +++.... .
T Consensus 205 l~~A~~~~lpvi~vv~NN~~~i~~~~~~~~-~------------------------------------------------ 235 (400)
T 2bfd_A 205 FNFAATLECPIIFFCRNNGYAISTPTSEQY-R------------------------------------------------ 235 (400)
T ss_dssp HHHHHHTTCCEEEEEEECSEETTEEGGGTC-S------------------------------------------------
T ss_pred HHHHHHHCcCEEEEEECCceeeeecccccC-C------------------------------------------------
Confidence 9999999999999999997532 2221100 0
Q ss_pred hhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHHHHhHhC--CCCCCEEEEEEeecCCCCChhh
Q 006251 375 ARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEM--PAPGPVLIHVVTEKGKGYPPAE 438 (654)
Q Consensus 375 ~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al~~ak~~--~~~gP~lI~v~T~KG~G~~~ae 438 (654)
..+...++++|||+++ .|||||+++|.+++++|++. ..++|++|++.|++-.|+++.+
T Consensus 236 -----~~d~~~~a~a~G~~~~-~VdG~D~~av~~a~~~A~~~ar~~~~P~lIe~~tyR~~gHs~~D 295 (400)
T 2bfd_A 236 -----GDGIAARGPGYGIMSI-RVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSD 295 (400)
T ss_dssp -----SSTTGGGTGGGTCEEE-EEETTCHHHHHHHHHHHHHHHHHHTCCEEEEEECCCCC--CC--
T ss_pred -----CCCHHHHHHHcCCcEE-EEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeeeeCCCCCCC
Confidence 0112345999999999 89999999999999877641 1378999999998888777643
No 29
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=99.91 E-value=4.7e-23 Score=224.57 Aligned_cols=229 Identities=19% Similarity=0.138 Sum_probs=159.4
Q ss_pred CCCCHHHHHHHHHH---HHHHHHHHhh----ccCCCCCCCccHHHHHHHHHhhcCCCCcEEEecCCchHHHHHHHcCC--
Q 006251 153 KNLSTEDLEQLAAE---LRADIVNSVS----KTGGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILTGR-- 223 (654)
Q Consensus 153 ~~l~~~~L~~la~~---lR~~il~~v~----~~~GH~gsslg~vel~~aL~~v~~~p~Dr~I~s~GH~aY~~~~l~Gr-- 223 (654)
.+++.+++.++.+. +|..--++.. +.-++++++.|+..+.+++-..+ .++|.++.. |+..++.+..|.
T Consensus 69 ~~~~~e~~~~~y~~M~~~R~fe~~~~~~~~qgr~~~~~~~~GqEA~~vg~~~al-~~~D~v~~~--yR~~~~~l~~g~~~ 145 (407)
T 1qs0_A 69 EDIDPQILRQGMRAMLKTRIFDSRMVVAQRQKKMSFYMQSLGEEAIGSGQALAL-NRTDMCFPT--YRQQSILMARDVSL 145 (407)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCCCTTTHHHHHHHHHHS-CTTSEEECC--SSCHHHHHHTTCCH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCcCCCChHHHHHHHHHhc-CCCCEEEec--ccchHHHHhcCCCH
Confidence 56788877766643 3433222222 12345668889877766665444 578988855 555446666775
Q ss_pred hHHHHHHHhc--CCCCCC--C-CCCCCCcccc-CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHH
Q 006251 224 RSRMNTMRKT--SGLAGF--P-KREESVHDAF-GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMN 297 (654)
Q Consensus 224 ~~~l~~lrq~--ggl~G~--p-~~~es~~~~f-g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln 297 (654)
.+.|.+|.-. +...|+ + +........+ ++|++|+++|+|+|+|+|.++++++++|||++|||++++|.+||+||
T Consensus 146 ~~i~~el~g~~~~~~~G~g~~~h~~~~~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~vv~i~GDGa~~~G~~~Eal~ 225 (407)
T 1qs0_A 146 VEMICQLLSNERDPLKGRQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALT 225 (407)
T ss_dssp HHHHHHHHTCTTCTTTTCSCTTCCCBGGGTBCCCCSSSSHHHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCCCCceeecchhccCccccccccccchhHHHHHHHHHHHhCCCCEEEEEECCchhhcChHHHHHH
Confidence 3555555321 111121 1 1111112223 58999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCEEEEEECCCCCc-ccccccCCCCCchhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhh
Q 006251 298 NAGFLDANLIVVLNDNKQVS-LPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYAR 376 (654)
Q Consensus 298 ~A~~~~lnLi~Il~dN~~~s-~pt~~~~g~~~~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r 376 (654)
+|+.+++|+++||+||++.+ +++......
T Consensus 226 ~A~~~~lpvi~Vv~NN~~gi~~~~~~~~~~-------------------------------------------------- 255 (407)
T 1qs0_A 226 FAHVYRAPVILNVVNNQWAISTFQAIAGGE-------------------------------------------------- 255 (407)
T ss_dssp HHHHHTCCEEEEEEECSEETTEEGGGGTTT--------------------------------------------------
T ss_pred HHHHHCcCEEEEEECCCcceeeccccccCC--------------------------------------------------
Confidence 99999999999999998532 211100000
Q ss_pred hccCCChhhhhhhcCCeEEeecCCCCHHHHHHHHHHhHhC--CCCCCEEEEEEeecCCCCChhh
Q 006251 377 GLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEM--PAPGPVLIHVVTEKGKGYPPAE 438 (654)
Q Consensus 377 ~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al~~ak~~--~~~gP~lI~v~T~KG~G~~~ae 438 (654)
..+...++++|||+++ .|||+|++++.+++++|.+. ..++|++|++.|+|++|++.++
T Consensus 256 ---~~d~a~~a~a~G~~~~-~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~Ghs~~D 315 (407)
T 1qs0_A 256 ---STTFAGRGVGCGIASL-RVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAGPHSTSD 315 (407)
T ss_dssp ---TCCSTHHHHHTTCEEE-EEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCCSCSSTTC
T ss_pred ---CCCHHHHHHHcCCeEE-EEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeeccCCcCCCC
Confidence 0111335899999999 89999999999999887641 2479999999999999999876
No 30
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=99.54 E-value=1.8e-14 Score=164.40 Aligned_cols=193 Identities=17% Similarity=0.175 Sum_probs=124.8
Q ss_pred CccHHHHHHHHHhhcCCCCcEEEecCC-chHHHHHHHcCChHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhHHHHH
Q 006251 185 NLGVVELTLALHRVFNTPDDKIIWDVG-HQAYVHKILTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGL 263 (654)
Q Consensus 185 slg~vel~~aL~~v~~~p~Dr~I~s~G-H~aY~~~~l~Gr~~~l~~lrq~ggl~G~p~~~es~~~~fg~G~lG~~is~Al 263 (654)
.+....++..|...+ .++|.|+++.| |+.+++.++..+. +.+ .....+.|++|.++++|+
T Consensus 370 ~l~~~~~~~~l~~~l-~~~~ivv~d~G~~~~~~~~~~~~~~---------------~~~---~~~~~~~g~~G~~l~~A~ 430 (603)
T 4feg_A 370 PLQAYQVLRAVNKIA-EPDAIYSIDVGDINLNANRHLKLTP---------------SNR---HITSNLFATMGVGIPGAI 430 (603)
T ss_dssp BCCHHHHHHHHHHHC-CTTCEEEECSSHHHHHHHHHCCCCT---------------TCE---EECCCSSCCTTCHHHHHH
T ss_pred CcCHHHHHHHHHHhC-CCCCEEEECCchHHHHHHHhceeCC---------------CCc---eecCcccccccchhHHHh
Confidence 455555555554444 46788889988 6655554433210 000 111225688999999999
Q ss_pred HHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCC-CCcccccccCCCCCchhhhhHHHHHhhh
Q 006251 264 GMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNK-QVSLPTATLDGPATPVGALSSALSKLQA 342 (654)
Q Consensus 264 GmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~-~~s~pt~~~~g~~~~vgals~~l~~~~~ 342 (654)
|+++|. ++++|||++|||+++. .+++|++|+++++|+++||.||+ +.+.... +
T Consensus 431 Gaala~----~~~~vv~~~GDG~~~~--~~~~l~~a~~~~lp~~~vv~nN~~~~~~~~~-------------------~- 484 (603)
T 4feg_A 431 AAKLNY----PERQVFNLAGDGGASM--TMQDLATQVQYHLPVINVVFTNCQYGFIKDE-------------------Q- 484 (603)
T ss_dssp HHHHHC----TTSCEEEEEEHHHHHH--HGGGHHHHHHTTCCCEEEEEECSBCHHHHHH-------------------H-
T ss_pred hHHHhC----CCCcEEEEeccHHHhh--hHHHHHHHHHHCcCeEEEEEECCchHHHHHH-------------------H-
Confidence 999885 4889999999999985 58899999999999988888886 3211000 0
Q ss_pred chhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHHHHhH--hCCCCC
Q 006251 343 STNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVK--EMPAPG 420 (654)
Q Consensus 343 ~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al~~ak--~~~~~g 420 (654)
+....+ +.+....-..+...++++||++++ .|| +.++|.+++++++ + .+|
T Consensus 485 -----------~~~~~~------------~~~~~~~~~~d~~~~a~a~G~~~~-~v~--~~~~l~~al~~a~~~~--~~g 536 (603)
T 4feg_A 485 -----------EDTNQN------------DFIGVEFNDIDFSKIADGVHMQAF-RVN--KIEQLPDVFEQAKAIA--QHE 536 (603)
T ss_dssp -----------HHHCSS------------CCCSSBCCCCCHHHHHHHTTCEEE-EEC--BGGGHHHHHHHHHHHT--TTS
T ss_pred -----------HHhcCC------------CcccCcCCCCCHHHHHHHCCCeEE-EEC--CHHHHHHHHHHHHHhc--CCC
Confidence 000000 000000011234556999999998 565 6789999999988 5 479
Q ss_pred CEEEEEEeecCCCCChhhcCccccccccCCC
Q 006251 421 PVLIHVVTEKGKGYPPAEAAADRMHGVVKFD 451 (654)
Q Consensus 421 P~lI~v~T~KG~G~~~ae~~~~~~Hg~~~f~ 451 (654)
|++|||.|.+++.+++. ...+..|+..+++
T Consensus 537 P~lIev~~~~~~~~~~~-~~~~~~~~~~~~~ 566 (603)
T 4feg_A 537 PVLIDAVITGDRPLPAE-KLRLDSAMSSAAD 566 (603)
T ss_dssp CEEEEEECCCCCCCCTT-SCCCCTTTSCHHH
T ss_pred cEEEEEEeCCCCCCCcc-cchhhhhhhhHHH
Confidence 99999999877776653 3345556654443
No 31
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=99.42 E-value=9.9e-13 Score=148.68 Aligned_cols=177 Identities=16% Similarity=0.162 Sum_probs=117.4
Q ss_pred CccHHHHHHHHHhhcCCCCcEEEecCCchH-HHHHHHcCChHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhHHHHH
Q 006251 185 NLGVVELTLALHRVFNTPDDKIIWDVGHQA-YVHKILTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGL 263 (654)
Q Consensus 185 slg~vel~~aL~~v~~~p~Dr~I~s~GH~a-Y~~~~l~Gr~~~l~~lrq~ggl~G~p~~~es~~~~fg~G~lG~~is~Al 263 (654)
.+....++.+|...+ .+++.++.+.|+.. +++..+..+. |. +.....|.|++|+++|+|+
T Consensus 369 ~~~~~~~~~~l~~~l-~~~~iv~~d~G~~~~~~~~~~~~~~---------------~~---~~~~~~g~g~~G~~l~~Ai 429 (563)
T 2uz1_A 369 ALHPFHASQVIAKHV-DAGVTVVADGALTYLWLSEVMSRVK---------------PG---GFLCHGYLGSMGVGFGTAL 429 (563)
T ss_dssp SCCHHHHHHHHHTTC-STTEEEEECSSHHHHHHHHHHTTSC---------------CS---EEECCCTTCCTTTHHHHHH
T ss_pred CcCHHHHHHHHHHhC-CCCcEEEEcCchHHHHHHHhccccC---------------CC---eEECCCCCccccChHHHHH
Confidence 355666666666554 24677788888753 4554433210 11 1223346799999999999
Q ss_pred HHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCC-CCcccccccCCCCCchhhhhHHHHHhhh
Q 006251 264 GMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNK-QVSLPTATLDGPATPVGALSSALSKLQA 342 (654)
Q Consensus 264 GmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~-~~s~pt~~~~g~~~~vgals~~l~~~~~ 342 (654)
|+|+|.+ +++++|||++|||+++. .+++|++|.++++|+++||.||+ +.+. ..++...
T Consensus 430 Gaa~a~~--~~~~~vv~i~GDG~~~~--~~~~L~ta~~~~l~~~ivv~nN~~~~~~----------------~~~~~~~- 488 (563)
T 2uz1_A 430 GAQVADL--EAGRRTILVTGDGSVGY--SIGEFDTLVRKQLPLIVIIMNNQSWGAT----------------LHFQQLA- 488 (563)
T ss_dssp HHHHHHH--HHTCEEEEEEEHHHHGG--GTTHHHHHHHHTCCCEEEEEECSBCHHH----------------HHHHHHH-
T ss_pred HHHHHhh--CCCCeEEEEEccHHHhC--CHHHHHHHHHhCCCeEEEEEeCCcchHH----------------HHHHHHh-
Confidence 9999986 56889999999999985 57899999999999877777775 3210 0000000
Q ss_pred chhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHHHHhHhCCCCCCE
Q 006251 343 STNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPV 422 (654)
Q Consensus 343 ~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al~~ak~~~~~gP~ 422 (654)
.+. + +....++-..+...++++||++++ .+ ++.++|.++++++++. ++|+
T Consensus 489 -----------------~~~-------~-~~~~~~~~~~d~~~~a~a~G~~~~-~v--~~~~~l~~al~~a~~~--~gp~ 538 (563)
T 2uz1_A 489 -----------------VGP-------N-RVTGTRLENGSYHGVAAAFGADGY-HV--DSVESFSAALAQALAH--NRPA 538 (563)
T ss_dssp -----------------TCT-------T-CCCSCBCCCCCHHHHHHHTTCEEE-EE--CSHHHHHHHHHHHHHS--SSCE
T ss_pred -----------------cCC-------C-cccCCcCCCCCHHHHHHHcCCeEE-Ee--CCHHHHHHHHHHHHHC--CCCE
Confidence 000 0 000000011244567999999998 55 4799999999999874 7999
Q ss_pred EEEEEeecC
Q 006251 423 LIHVVTEKG 431 (654)
Q Consensus 423 lI~v~T~KG 431 (654)
+||+.|.+.
T Consensus 539 liev~~~~~ 547 (563)
T 2uz1_A 539 CINVAVALD 547 (563)
T ss_dssp EEEEECCSC
T ss_pred EEEEEeccc
Confidence 999999843
No 32
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=99.35 E-value=7.9e-12 Score=141.50 Aligned_cols=174 Identities=16% Similarity=0.219 Sum_probs=115.1
Q ss_pred ccHHHHHHHHHhhcCCCCcEEEecCC-chHHHHHHHcCChHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhHHHHHH
Q 006251 186 LGVVELTLALHRVFNTPDDKIIWDVG-HQAYVHKILTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGLG 264 (654)
Q Consensus 186 lg~vel~~aL~~v~~~p~Dr~I~s~G-H~aY~~~~l~Gr~~~l~~lrq~ggl~G~p~~~es~~~~fg~G~lG~~is~AlG 264 (654)
+....++.+|...+ .+++.++.+.| |+.+....+. + ..|. +.....|.|++|+++|+|+|
T Consensus 371 l~~~~v~~~l~~~l-~~~~iv~~d~G~~~~~~~~~~~--------~-------~~~~---~~~~~~g~g~mG~~l~~AiG 431 (566)
T 1ozh_A 371 LHPLRIVRAMQDIV-NSDVTLTVDMGSFHIWIARYLY--------T-------FRAR---QVMISNGQQTMGVALPWAIG 431 (566)
T ss_dssp BCHHHHHHHHHHHC-CTTEEEEECSSHHHHHHHHTGG--------G-------CCCS---EEECCCTTCCTTCHHHHHHH
T ss_pred cCHHHHHHHHHHhC-CCCCEEEEcCcHHHHHHHHhcc--------c-------CCCC---eEEeCCCcccccchHHHHHH
Confidence 56666676776555 24566777887 3322221111 0 0111 11222367999999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCC-CCcccccccCCCCCchhhhhHHHHHhhhc
Q 006251 265 MAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNK-QVSLPTATLDGPATPVGALSSALSKLQAS 343 (654)
Q Consensus 265 mAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~-~~s~pt~~~~g~~~~vgals~~l~~~~~~ 343 (654)
+|+|. ++++|||++|||+++ +.+++|++|.++++|+++||.||+ +.+. ..++.....
T Consensus 432 aala~----~~~~vv~i~GDG~~~--~~~~~L~ta~~~~l~~~ivv~nN~~~~~~----------------~~~~~~~~~ 489 (566)
T 1ozh_A 432 AWLVN----PERKVVSVSGDGGFL--QSSMELETAVRLKANVLHLIWVDNGYNMV----------------AIQEEKKYQ 489 (566)
T ss_dssp HHHHS----TTSEEEEEEEHHHHH--HHTTHHHHHHHHTCCEEEEEEECSBCHHH----------------HHHHHHHHS
T ss_pred HHHhC----CCCCEEEEEcChHHh--ccHHHHHHHHHhCCCcEEEEEECCchhHH----------------HHHHHHhcC
Confidence 99996 478999999999998 567899999999999888887776 3210 000000000
Q ss_pred hhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHHHHhHhCCCCCCEE
Q 006251 344 TNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVL 423 (654)
Q Consensus 344 ~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al~~ak~~~~~gP~l 423 (654)
+ .|..++-..+...++++||++++ .++ +.+++.++++++.+. ++|++
T Consensus 490 ~----------------------------~~~~~~~~~d~~~~a~a~G~~~~-~v~--~~~el~~al~~a~~~--~gp~l 536 (566)
T 1ozh_A 490 R----------------------------LSGVEFGPMDFKAYAESFGAKGF-AVE--SAEALEPTLRAAMDV--DGPAV 536 (566)
T ss_dssp S----------------------------CCSCBCCCCCHHHHHHTTTSEEE-ECC--SGGGHHHHHHHHHHS--SSCEE
T ss_pred C----------------------------CccCcCCCCCHHHHHHHcCCeEE-EeC--CHHHHHHHHHHHHhC--CCCEE
Confidence 0 00001112344667999999998 565 688999999998864 79999
Q ss_pred EEEEeecCCC
Q 006251 424 IHVVTEKGKG 433 (654)
Q Consensus 424 I~v~T~KG~G 433 (654)
||+.|.+...
T Consensus 537 iev~~~~~~~ 546 (566)
T 1ozh_A 537 VAIPVDYRDN 546 (566)
T ss_dssp EEEEBCCTTH
T ss_pred EEEEeCCCcC
Confidence 9999988765
No 33
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=99.31 E-value=2.6e-12 Score=146.09 Aligned_cols=140 Identities=20% Similarity=0.265 Sum_probs=95.7
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCC-CCcccccccCCCCCc
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNK-QVSLPTATLDGPATP 329 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~-~~s~pt~~~~g~~~~ 329 (654)
+.|++|+++|+|+|+|+|. ++++|||++|||+++ +.+++|++|.++++|+++||.||+ +.+..
T Consensus 424 ~~G~~G~~l~~AiGaala~----~~~~vv~i~GDGs~~--~~~~~L~ta~~~~l~~~ivv~NN~~~~~~~---------- 487 (590)
T 1ybh_A 424 GLGAMGFGLPAAIGASVAN----PDAIVVDIDGDGSFI--MNVQELATIRVENLPVKVLLLNNQHLGMVM---------- 487 (590)
T ss_dssp SSCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHH--HTTTHHHHHHHTTCCEEEEEEECSBCHHHH----------
T ss_pred CcccccchHHHHHHHHHhC----CCCcEEEEEccchhh--ccHHHHHHHHHhCCCcEEEEEECCcchHHH----------
Confidence 5699999999999999986 478999999999998 567899999999999777776665 42210
Q ss_pred hhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHH
Q 006251 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (654)
Q Consensus 330 vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~a 409 (654)
.++.......+. ....+.+.. ...-..+...++++||++++ .|+ +.++|.++
T Consensus 488 ------~~~~~~~~~~~~---------~~~~~~p~~----------~~~~~~d~~~~a~a~G~~~~-~v~--~~~el~~a 539 (590)
T 1ybh_A 488 ------QWEDRFYKANRA---------HTFLGDPAQ----------EDEIFPNMLLFAAACGIPAA-RVT--KKADLREA 539 (590)
T ss_dssp ------HHHHHHSTTCCC---------SCBCSCGGG----------TTSCSSCHHHHHHHTTCCEE-EEC--BHHHHHHH
T ss_pred ------HHHHHhcCCccc---------ccccccccc----------ccCCCCCHHHHHHHcCCeEE-EeC--CHHHHHHH
Confidence 000000000000 000000000 00001234567999999998 564 79999999
Q ss_pred HHHhHhCCCCCCEEEEEEeecCCCCCh
Q 006251 410 FQRVKEMPAPGPVLIHVVTEKGKGYPP 436 (654)
Q Consensus 410 l~~ak~~~~~gP~lI~v~T~KG~G~~~ 436 (654)
++++++. ++|++||+.|.++....+
T Consensus 540 l~~a~~~--~gp~liev~~~~~~~~~p 564 (590)
T 1ybh_A 540 IQTMLDT--PGPYLLDVICPHQEHVLP 564 (590)
T ss_dssp HHHHHHS--SSCEEEEEECCTTCCCCS
T ss_pred HHHHHhC--CCCEEEEEEecCCcccCC
Confidence 9999874 799999999999887644
No 34
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=99.27 E-value=1.2e-11 Score=143.17 Aligned_cols=132 Identities=21% Similarity=0.327 Sum_probs=96.3
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCC-CCcccccccCCCCCc
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNK-QVSLPTATLDGPATP 329 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~-~~s~pt~~~~g~~~~ 329 (654)
+.|++|+++|+|+|+|+|. ++++|||++|||+++ +.+++|++|.++++|+++||.||+ +.+
T Consensus 511 ~~G~mG~~lpaAiGaalA~----p~~~Vv~i~GDGsf~--~~~~eL~ta~~~~l~v~ivV~NN~~~g~------------ 572 (677)
T 1t9b_A 511 GLGTMGYGLPAAIGAQVAK----PESLVIDIDGDASFN--MTLTELSSAVQAGTPVKILILNNEEQGM------------ 572 (677)
T ss_dssp SSCCTTCHHHHHHHHHHHC----TTSEEEEEEEHHHHH--HHGGGHHHHHHHTCCCEEEEEECSSCHH------------
T ss_pred CcchhhchHHHHHHHHHhC----CCCeEEEEEeehHHh--ccHHHHHHHHHhCCCeEEEEEeCCCchh------------
Confidence 5689999999999999995 688999999999998 567889999999999877777775 321
Q ss_pred hhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHh-hhccCCChhhhhhhcCCeEEeecCCCCHHHHHH
Q 006251 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYA-RGLISASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (654)
Q Consensus 330 vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~-r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~ 408 (654)
. ..++... | . +.+. ...-..+...++++||++++ .| ++.++|.+
T Consensus 573 ---~-~~~~~~~----~----------~--------------~~~~~~~~~~~d~~~la~a~G~~~~-~v--~~~~el~~ 617 (677)
T 1t9b_A 573 ---V-TQWQSLF----Y----------E--------------HRYSHTHQLNPDFIKLAEAMGLKGL-RV--KKQEELDA 617 (677)
T ss_dssp ---H-HHHHHHH----S----------T--------------TCCCSCCCCCCCHHHHHHHTTCEEE-EE--CSHHHHHH
T ss_pred ---h-hhhhhhh----c----------C--------------CCcccCcCCCCCHHHHHHHcCCeEE-EE--CCHHHHHH
Confidence 0 0000000 0 0 0000 00112345667999999998 45 47999999
Q ss_pred HHHHhHhCCCCCCEEEEEEeecCCCCChh
Q 006251 409 IFQRVKEMPAPGPVLIHVVTEKGKGYPPA 437 (654)
Q Consensus 409 al~~ak~~~~~gP~lI~v~T~KG~G~~~a 437 (654)
+|+++.+. ++|++||+.|.++....++
T Consensus 618 al~~a~~~--~gp~lIev~~~~~~~~~p~ 644 (677)
T 1t9b_A 618 KLKEFVST--KGPVLLEVEVDKKVPVLPM 644 (677)
T ss_dssp HHHHHHHC--SSCEEEEEEBCSSCCCSSB
T ss_pred HHHHHHHC--CCcEEEEEEecCCcccCCc
Confidence 99998874 7899999999998876544
No 35
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=99.26 E-value=5.2e-12 Score=142.72 Aligned_cols=129 Identities=16% Similarity=0.165 Sum_probs=95.2
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCC-CCcccccccCCCCCc
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNK-QVSLPTATLDGPATP 329 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~-~~s~pt~~~~g~~~~ 329 (654)
+.|.+|+++|+|+|+|+|.+.++.+++|||++|||+++ +.+++|++|.++++|+++||.||+ +.+... +.+....
T Consensus 411 ~~g~mG~~l~~A~Gaala~~~~~~~~~vv~~~GDG~~~--~~~~el~ta~~~~l~~~ivv~nN~~~~~~~~--~~~~~~~ 486 (563)
T 2vk8_A 411 LWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQ--LTVQEISTMIRWGLKPYLFVLNNDGYTIQKL--IHGPKAQ 486 (563)
T ss_dssp TTCCTTHHHHHHHHHHHHHHHHCTTCCEEEEEEHHHHH--HHGGGHHHHHHTTCCCEEEEEESSSCHHHHH--HSCTTCG
T ss_pred chhhhhhHHHHHHHHHHhCcccCCCCCEEEEEcchHhh--ccHHHHHHHHHcCCCcEEEEEECCcchhhhh--hhCCCCC
Confidence 67999999999999999998888889999999999998 568999999999999777776665 422100 0000000
Q ss_pred hhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCe---EEeecCCCCHHHH
Q 006251 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLY---YIGPVDGHNVEDL 406 (654)
Q Consensus 330 vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~---~ig~vDGhDi~~L 406 (654)
+ .++-..+...++++||++ ++ .|+ +.++|
T Consensus 487 --------------------------------------------~-~~~~~~d~~~~a~a~G~~~~~~~-~v~--~~~el 518 (563)
T 2vk8_A 487 --------------------------------------------Y-NEIQGWDHLSLLPTFGAKDYETH-RVA--TTGEW 518 (563)
T ss_dssp --------------------------------------------G-GCCCCCCGGGHHHHTTCSSEEEE-EEC--BHHHH
T ss_pred --------------------------------------------c-ccCCCCCHHHHHHHhCCCCCcEE-Eec--CHHHH
Confidence 0 011122446679999998 77 565 68999
Q ss_pred HHHHH-HhHhCCCCCCEEEEEEeecCC
Q 006251 407 VTIFQ-RVKEMPAPGPVLIHVVTEKGK 432 (654)
Q Consensus 407 ~~al~-~ak~~~~~gP~lI~v~T~KG~ 432 (654)
.++++ ++.+. .++|++|++.|.+..
T Consensus 519 ~~al~~~a~~~-~~~p~liev~~~~~~ 544 (563)
T 2vk8_A 519 DKLTQDKSFND-NSKIRMIEVMLPVFD 544 (563)
T ss_dssp HHHHTCTTTTS-CSSEEEEEEECCTTC
T ss_pred HHHHHHHHHhC-CCCcEEEEEEeCccc
Confidence 99998 77653 247999999997544
No 36
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=99.26 E-value=9e-12 Score=141.18 Aligned_cols=125 Identities=18% Similarity=0.249 Sum_probs=91.7
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCC-CCcccccccCCCCCc
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNK-QVSLPTATLDGPATP 329 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~-~~s~pt~~~~g~~~~ 329 (654)
|.|++|+++|+|+|+|+|. ++++|||++|||+++. .+++|++|.++++|+++||.||+ +.+.
T Consensus 434 g~g~mG~~l~~AiGaa~a~----~~~~vv~i~GDG~~~~--~~~~L~~a~~~~l~~~ivv~NN~~~~~~----------- 496 (573)
T 2iht_A 434 GCSSFGYGIPAAIGAQMAR----PDQPTFLIAGDGGFHS--NSSDLETIARLNLPIVTVVVNNDTNGLI----------- 496 (573)
T ss_dssp SSCCTTCHHHHHHHHHHHS----TTSCEEEEEEHHHHHH--TGGGHHHHHHHTCCCEEEEEECSBCHHH-----------
T ss_pred CCcccccHHHHHHHHHHhC----CCCcEEEEEccHHHHh--HHHHHHHHHHhCCCeEEEEEECCcchhh-----------
Confidence 6799999999999999996 4789999999999984 57899999999999877776665 4220
Q ss_pred hhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHh--hhccCCChhhhhhhcCCeEEeecCCCCHHHHH
Q 006251 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYA--RGLISASGSTFFEELGLYYIGPVDGHNVEDLV 407 (654)
Q Consensus 330 vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~--r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~ 407 (654)
+.++... | +.. +. ..+-..+...++++||++++ .|+ +.++|.
T Consensus 497 -----~~~~~~~----~--------------~~~----------~~~~~~~~~~d~~~~a~a~G~~~~-~v~--~~~~l~ 540 (573)
T 2iht_A 497 -----ELYQNIG----H--------------HRS----------HDPAVKFGGVDFVALAEANGVDAT-RAT--NREELL 540 (573)
T ss_dssp -----HHHHHHH----H--------------SSC----------CGGGTBCCCCCHHHHHHHTTCEEE-ECC--SHHHHH
T ss_pred -----HHHHHHh----c--------------CCC----------cCccccCCCCCHHHHHHHcCCeEE-EeC--CHHHHH
Confidence 0000000 0 000 00 01112345667999999998 564 789999
Q ss_pred HHHHHhHhCCCCCCEEEEEEeec
Q 006251 408 TIFQRVKEMPAPGPVLIHVVTEK 430 (654)
Q Consensus 408 ~al~~ak~~~~~gP~lI~v~T~K 430 (654)
++++++++. ++|++||+.|.+
T Consensus 541 ~al~~a~~~--~gp~liev~~~~ 561 (573)
T 2iht_A 541 AALRKGAEL--GRPFLIEVPVNY 561 (573)
T ss_dssp HHHHHHHTS--SSCEEEEEEBCC
T ss_pred HHHHHHHhC--CCCEEEEEECCC
Confidence 999999863 799999999988
No 37
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=99.25 E-value=1.1e-11 Score=139.06 Aligned_cols=125 Identities=26% Similarity=0.334 Sum_probs=90.6
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCC-CCcccccccCCCCCc
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNK-QVSLPTATLDGPATP 329 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~-~~s~pt~~~~g~~~~ 329 (654)
| |++|+++|+|+|+|+|. ++++|||++|||+++.+ +|+|++|.++++|+++||.||+ +.+.
T Consensus 400 g-g~~G~~l~~A~G~a~a~----~~~~vv~~~GDG~~~~~--~~~l~~a~~~~l~~~ivv~nN~~~~~~----------- 461 (528)
T 1q6z_A 400 A-GGLGFALPAAIGVQLAE----PERQVIAVIGDGSANYS--ISALWTAAQYNIPTIFVIMNNGTYGAL----------- 461 (528)
T ss_dssp T-CCTTSHHHHHHHHHHHC----TTSCEEEEEEHHHHTTT--GGGHHHHHHHTCCCEEEEEECSBCHHH-----------
T ss_pred C-ccccchHHHHHHHHHhC----CCCcEEEEECCcHHHhh--HHHHHHHHHhCCCeEEEEEeCCcchHh-----------
Confidence 5 99999999999999986 47889999999999954 8999999999999888887776 3210
Q ss_pred hhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHH
Q 006251 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (654)
Q Consensus 330 vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~a 409 (654)
+.++.......+ .+ .++-..+...++++||++++ .|+ +.+++.++
T Consensus 462 -----~~~~~~~~~~~~-------------~~--------------~~~~~~d~~~~a~a~G~~~~-~v~--~~~~l~~a 506 (528)
T 1q6z_A 462 -----RWFAGVLEAENV-------------PG--------------LDVPGIDFRALAKGYGVQAL-KAD--NLEQLKGS 506 (528)
T ss_dssp -----HHHHHHHTCCSC-------------CS--------------CBCCCCCHHHHHHHHTCEEE-EES--SHHHHHHH
T ss_pred -----HHHHHHhcCCCc-------------cc--------------CCCCCCCHHHHHHHcCCeEE-EeC--CHHHHHHH
Confidence 000000000000 00 00111234567999999998 676 67899999
Q ss_pred HHHhHhCCCCCCEEEEEEeec
Q 006251 410 FQRVKEMPAPGPVLIHVVTEK 430 (654)
Q Consensus 410 l~~ak~~~~~gP~lI~v~T~K 430 (654)
++++++. ++|++||+.|.+
T Consensus 507 l~~a~~~--~gp~liev~~~~ 525 (528)
T 1q6z_A 507 LQEALSA--KGPVLIEVSTVS 525 (528)
T ss_dssp HHHHHTC--SSCEEEEEEBCC
T ss_pred HHHHHHC--CCcEEEEEEecC
Confidence 9998864 799999999975
No 38
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=99.25 E-value=5.6e-12 Score=144.08 Aligned_cols=135 Identities=22% Similarity=0.256 Sum_probs=92.4
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCC-CCcccccccCCCCCc
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNK-QVSLPTATLDGPATP 329 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~-~~s~pt~~~~g~~~~ 329 (654)
+.|++|+++|+|+|+|+|. ++++|||++|||+++ +.+++|++|+++++|+++||.||+ +.+....+
T Consensus 440 ~~G~~G~~l~~AiGaala~----~~~~vv~i~GDGs~~--~~~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~~------- 506 (616)
T 2pan_A 440 QAGPLGWTIPAALGVCAAD----PKRNVVAISGDFDFQ--FLIEELAVGAQFNIPYIHVLVNNAYLGLIRQSQ------- 506 (616)
T ss_dssp TTCCTTCHHHHHHHHHHHC----TTCEEEEEEEHHHHH--HTGGGHHHHHHTTCCCEEEEEECSBCHHHHHHG-------
T ss_pred CcccccchHHHHHHHHHhC----CCCcEEEEEcchhhh--CCHHHHHHHHHhCCCeEEEEEECCcchHHHHHH-------
Confidence 5699999999999999996 478999999999998 557899999999999877777775 43211100
Q ss_pred hhhhhHHHHHhhhch-----hHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHH
Q 006251 330 VGALSSALSKLQAST-----NFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVE 404 (654)
Q Consensus 330 vgals~~l~~~~~~~-----~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~ 404 (654)
...... .|.. . .... ......+...++++||++++ .|+ +.+
T Consensus 507 ---------~~~~~~~~~~~~~~~---------------~-~~~~------~~~~~~d~~~~a~a~G~~~~-~v~--~~~ 552 (616)
T 2pan_A 507 ---------RAFDMDYCVQLAFEN---------------I-NSSE------VNGYGVDHVKVAEGLGCKAI-RVF--KPE 552 (616)
T ss_dssp ---------GGGTCCCSCBCCCCC---------------T-TCGG------GTTCCCCHHHHHHHTTCEEE-EEC--SGG
T ss_pred ---------HHhcCCccccccccc---------------c-cccc------CCCCCCCHHHHHHHcCCeEE-EEC--CHH
Confidence 000000 0000 0 0000 00001233567999999998 464 788
Q ss_pred HHHHHHHHhHh----CCCCCCEEEEEEeecCCCC
Q 006251 405 DLVTIFQRVKE----MPAPGPVLIHVVTEKGKGY 434 (654)
Q Consensus 405 ~L~~al~~ak~----~~~~gP~lI~v~T~KG~G~ 434 (654)
+|.++++++++ . ++|++||+.|.++.-.
T Consensus 553 el~~al~~a~~~~~~~--~gp~lIev~~~~~~~~ 584 (616)
T 2pan_A 553 DIAPAFEQAKALMAQY--RVPVVVEVILERVTNI 584 (616)
T ss_dssp GHHHHHHHHHHHHHHH--CSCEEEEEEBCSCCCC
T ss_pred HHHHHHHHHHhhcccC--CCcEEEEEEecccccC
Confidence 99999988765 4 7899999999988743
No 39
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=99.24 E-value=6.5e-12 Score=142.83 Aligned_cols=132 Identities=21% Similarity=0.261 Sum_probs=96.2
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCC-CCcccccccCCCCCc
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNK-QVSLPTATLDGPATP 329 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~-~~s~pt~~~~g~~~~ 329 (654)
|.|++|+++|+|+|+|+|. ++++|||++|||+++ +.+|+|++|.++++|+++||.||+ +.+
T Consensus 422 g~g~mG~~l~~AiGaala~----~~~~vv~i~GDG~~~--~~~~~L~ta~~~~l~~~ivv~nN~~~~~------------ 483 (589)
T 2pgn_A 422 AEGILGCGFPMALGAQLAE----PNSRVFLGTGDGALY--YHFNEFRVAVEHKLPVITMVFTNESYGA------------ 483 (589)
T ss_dssp TTCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHH--HHGGGHHHHHHTTCCCEEEEEECSBCHH------------
T ss_pred CcchhhhHHHHHHHHHHhC----CCCcEEEEEeeHHHH--hhHHHHHHHHHhCCCeEEEEEECCCccc------------
Confidence 5799999999999999986 478999999999998 457999999999999887777776 321
Q ss_pred hhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHH
Q 006251 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (654)
Q Consensus 330 vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~a 409 (654)
. ..++... | +. .+...+-..+...++++||++++ .|+ +.++|.++
T Consensus 484 ---~-~~~~~~~----~--------------~~----------~~~~~~~~~d~~~~a~a~G~~~~-~v~--~~~el~~a 528 (589)
T 2pgn_A 484 ---N-WTLMNHQ----F--------------GQ----------NNWTEFMNPDWVGIAKAFGAYGE-SVR--ETGDIAGA 528 (589)
T ss_dssp ---H-HHHHHHH----H--------------SS----------CCSCBCCCCCHHHHHHHHTCEEE-ECT--TTCCHHHH
T ss_pred ---c-hHHHHhh----c--------------CC----------CccccCCCCCHHHHHHHCCCeEE-EEC--CHHHHHHH
Confidence 0 0000000 0 00 00001112345667999999998 565 56888999
Q ss_pred HHHhHhCCCCCCEEEEEEeecCCCCChh
Q 006251 410 FQRVKEMPAPGPVLIHVVTEKGKGYPPA 437 (654)
Q Consensus 410 l~~ak~~~~~gP~lI~v~T~KG~G~~~a 437 (654)
++++.+. ++|++||+.|.++.++.+.
T Consensus 529 l~~a~~~--~gp~liev~~~~~~~~~~~ 554 (589)
T 2pgn_A 529 LQRAIDS--GKPALIEIPVSKTQGLASD 554 (589)
T ss_dssp HHHHHHH--CSCEEEEEECCSSSSTTTC
T ss_pred HHHHHhC--CCCEEEEEEecCCCCcCcc
Confidence 9988764 7999999999998877654
No 40
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=99.23 E-value=1.4e-11 Score=140.22 Aligned_cols=128 Identities=19% Similarity=0.228 Sum_probs=92.2
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCC-CCcccccccC-CCCC
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNK-QVSLPTATLD-GPAT 328 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~-~~s~pt~~~~-g~~~ 328 (654)
+.|.+|+++|+|+|+|+|. ++++|||++|||+++. .+++|++|.++++|+++||.||+ +.+....+.. +. .
T Consensus 411 ~~g~mG~~l~~AiGaala~----~~~~vv~i~GDG~~~~--~~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~q~~~~~-~ 483 (590)
T 1v5e_A 411 LFATMGIAIPGGLGAKNTY----PDRQVWNIIGDGAFSM--TYPDVVTNVRYNMPVINVVFSNTEYAFIKNKYEDTNK-N 483 (590)
T ss_dssp SSCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHH--HGGGHHHHHHTTCCCEEEEEECSSCTTGGGTTSSSCC-S
T ss_pred CCCcccChHHHHHHHHHhC----CCCeEEEEEechHHhc--hHHHHHHHHHhCCCCEEEEEECCchHHHHHHHHHhcC-C
Confidence 6799999999999999986 4789999999999984 57999999999999777776664 4432111100 00 0
Q ss_pred chhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHH
Q 006251 329 PVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (654)
Q Consensus 329 ~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~ 408 (654)
..+ .++-..+...++++||++++ .|+ +.++|.+
T Consensus 484 ~~~--------------------------------------------~~~~~~d~~~~a~a~G~~~~-~v~--~~~el~~ 516 (590)
T 1v5e_A 484 LFG--------------------------------------------VDFTDVDYAKIAEAQGAKGF-TVS--RIEDMDR 516 (590)
T ss_dssp CCC--------------------------------------------CCCCCCCHHHHHHHTTSEEE-EEC--BHHHHHH
T ss_pred Ccc--------------------------------------------ccCCCCCHHHHHHHcCCEEE-EEC--CHHHHHH
Confidence 000 00001233456999999998 565 7899999
Q ss_pred HHHHhHhC-CCCCCEEEEEEeecCC
Q 006251 409 IFQRVKEM-PAPGPVLIHVVTEKGK 432 (654)
Q Consensus 409 al~~ak~~-~~~gP~lI~v~T~KG~ 432 (654)
+++++.+. ..++|++||+.|.++.
T Consensus 517 al~~a~~~~~~~gp~liev~~~~~~ 541 (590)
T 1v5e_A 517 VMAEAVAANKAGHTVVIDCKITQDR 541 (590)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCSCC
T ss_pred HHHHHHHhcCCCCCEEEEEEecccc
Confidence 99988652 1168999999999876
No 41
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=99.22 E-value=1.2e-11 Score=139.59 Aligned_cols=129 Identities=18% Similarity=0.239 Sum_probs=92.4
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCC-CCcccccccCCCCCc
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNK-QVSLPTATLDGPATP 329 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~-~~s~pt~~~~g~~~~ 329 (654)
+.|++|.++|+|+|+|+|. ++++|||++|||+++ +.+++|++|.++++|+++||.||+ +.++...+..
T Consensus 404 ~~g~mG~~l~~AiGaala~----~~~~vv~i~GDGs~~--~~~~~L~ta~~~~l~~~ivv~nN~~~g~~~~~~~~----- 472 (549)
T 3eya_A 404 NHGSMANAMPQALGAQATE----PERQVVAMCGDGGFS--MLMGDFLSVVQMKLPVKIVVFNNSVLGFVAMEMKA----- 472 (549)
T ss_dssp TTCCTTCHHHHHHHHHHHS----TTSCEEEEEEHHHHH--HTGGGHHHHHHTTCCCEEEEEECSBCCCC-----------
T ss_pred CCchhhhHHHHHHHHHHhC----CCCcEEEEEccchhh--ccHHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHh-----
Confidence 5689999999999999986 478999999999997 568999999999999777766665 4321110000
Q ss_pred hhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHH
Q 006251 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (654)
Q Consensus 330 vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~a 409 (654)
.++ ..+..++-..+...++++||++++ .+ ++.++|.++
T Consensus 473 --------------~~~-------------------------~~~~~~~~~~d~~~~a~a~G~~~~-~v--~~~~~l~~a 510 (549)
T 3eya_A 473 --------------GGY-------------------------LTDGTELHDTNFARIAEACGITGI-RV--EKASEVDEA 510 (549)
T ss_dssp ---------------------------------------------CCBCCCCCHHHHHHHTTSEEE-EE--CSGGGHHHH
T ss_pred --------------cCC-------------------------CCcCCcCCCCCHHHHHHHcCCcEE-Ee--CCHHHHHHH
Confidence 000 000011112344567999999998 55 478899999
Q ss_pred HHHhHhCCCCCCEEEEEEeecCCCC
Q 006251 410 FQRVKEMPAPGPVLIHVVTEKGKGY 434 (654)
Q Consensus 410 l~~ak~~~~~gP~lI~v~T~KG~G~ 434 (654)
++++++. ++|++||+.|.+....
T Consensus 511 l~~a~~~--~gp~liev~~~~~~~~ 533 (549)
T 3eya_A 511 LQRAFSI--DGPVLVDVVVAKEELA 533 (549)
T ss_dssp HHHHHHS--SSCEEEEEEBCCCCSC
T ss_pred HHHHHhC--CCCEEEEEEecccccc
Confidence 9999874 7999999999876543
No 42
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=99.21 E-value=1.2e-11 Score=139.20 Aligned_cols=124 Identities=20% Similarity=0.242 Sum_probs=91.6
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCC-CCcccccccCCCCCc
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNK-QVSLPTATLDGPATP 329 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~-~~s~pt~~~~g~~~~ 329 (654)
+.|++|+++|+|+|+|+|. ++++|||++|||+++ +.+++|++|.++++|+++||.||+ +.+.... .+...
T Consensus 406 ~~g~mG~~l~~A~G~a~a~----~~~~vv~~~GDG~~~--~~~~el~ta~~~~l~~~ivv~nN~~~~~~~~~--~~~~~- 476 (552)
T 1ovm_A 406 LWGSIGYTLAAAFGAQTAC----PNRRVIVLTGDGAAQ--LTIQELGSMLRDKQHPIILVLNNEGYTVERAI--HGAEQ- 476 (552)
T ss_dssp TTCCTTHHHHHHHHHHHHC----TTSCEEEEEEHHHHH--HHTTHHHHHHHTTCCCEEEEEESSSCHHHHHH--SCTTC-
T ss_pred hhHhhhhHHHHHHHHHHhC----CCCcEEEEECchHHH--hHHHHHHHHHHhCCCCEEEEEECCCCeEEEee--ccCCC-
Confidence 6899999999999999985 478999999999998 678999999999999777776665 4221000 00000
Q ss_pred hhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCC----eEEeecCCCCHHH
Q 006251 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGL----YYIGPVDGHNVED 405 (654)
Q Consensus 330 vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~----~~ig~vDGhDi~~ 405 (654)
.| .+.-..+...++++||+ +++ .++ +.++
T Consensus 477 -------------------------------------------~~-~~~~~~d~~~~a~a~G~~~~~~~~-~v~--~~~~ 509 (552)
T 1ovm_A 477 -------------------------------------------RY-NDIALWNWTHIPQALSLDPQSECW-RVS--EAEQ 509 (552)
T ss_dssp -------------------------------------------GG-GCCCCCCGGGSTTTSCSSCCEEEE-EEC--BHHH
T ss_pred -------------------------------------------Cc-ccCCCCCHHHHHHHhCCCcCCCEE-EeC--CHHH
Confidence 00 01112344667999999 887 555 7899
Q ss_pred HHHHHHHhHhCCCCCCEEEEEEeecCC
Q 006251 406 LVTIFQRVKEMPAPGPVLIHVVTEKGK 432 (654)
Q Consensus 406 L~~al~~ak~~~~~gP~lI~v~T~KG~ 432 (654)
|.++++++++. ++|++||+.|.+..
T Consensus 510 l~~al~~a~~~--~gp~liev~~~~~~ 534 (552)
T 1ovm_A 510 LADVLEKVAHH--ERLSLIEVMLPKAD 534 (552)
T ss_dssp HHHHHHHHTTC--SSEEEEEEECCTTC
T ss_pred HHHHHHHHHhC--CCCEEEEEEcCccc
Confidence 99999988763 78999999998643
No 43
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=99.18 E-value=1e-11 Score=140.47 Aligned_cols=123 Identities=20% Similarity=0.245 Sum_probs=91.2
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCC-CCcccccccCCCCCc
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNK-QVSLPTATLDGPATP 329 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~-~~s~pt~~~~g~~~~ 329 (654)
+.|.+|+++|+|+|+|+|. ++++|||++|||+++ +.+++|++|.++++|+++||.||+ +.+++..+..
T Consensus 420 ~~g~mG~~l~~A~G~ala~----~~~~vv~i~GDG~~~--~~~~~l~ta~~~~l~~~ivv~nN~~~~~~~~~~~~----- 488 (565)
T 2nxw_A 420 YYAGMGFGVPAGIGAQCVS----GGKRILTVVGDGAFQ--MTGWELGNCRRLGIDPIVILFNNASWEMLRTFQPE----- 488 (565)
T ss_dssp TTCCTTCHHHHHHHHHHHT----TTCCEEEEEEHHHHH--HHGGGGGGHHHHTCCCEEEEEECSBCHHHHHHCTT-----
T ss_pred ccccccccchHHHHHHHhC----CCCcEEEEEechHHH--hhHHHHHHHHHhCCCCEEEEEECCCCcEEeeeccc-----
Confidence 4688999999999999996 478999999999999 899999999999999776666664 4322111000
Q ss_pred hhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHH
Q 006251 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (654)
Q Consensus 330 vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~a 409 (654)
..| .+.-..+...++++||++++ .|+ +.+++.++
T Consensus 489 --------------~~~-----------------------------~~~~~~d~~~~a~a~G~~~~-~v~--~~~el~~a 522 (565)
T 2nxw_A 489 --------------SAF-----------------------------NDLDDWRFADMAAGMGGDGV-RVR--TRAELKAA 522 (565)
T ss_dssp --------------CGG-----------------------------GBCCCCCHHHHTGGGTSEEE-EEC--BHHHHHHH
T ss_pred --------------CCC-----------------------------CcCCCCCHHHHHHHcCCCEE-EeC--CHHHHHHH
Confidence 000 00111233556999999998 565 78999999
Q ss_pred HHHhHhCCCCCCE-EEEEEeecCC
Q 006251 410 FQRVKEMPAPGPV-LIHVVTEKGK 432 (654)
Q Consensus 410 l~~ak~~~~~gP~-lI~v~T~KG~ 432 (654)
++++.+. ++|+ +||+.|.+..
T Consensus 523 l~~a~~~--~gp~~liev~~~~~~ 544 (565)
T 2nxw_A 523 LDKAFAT--RGRFQLIEAMIPRGV 544 (565)
T ss_dssp HHHHHHC--CSSCEEEEEECCTTC
T ss_pred HHHHHhc--CCCeEEEEEEccccc
Confidence 9998874 6887 9999997644
No 44
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=99.17 E-value=2.4e-11 Score=137.46 Aligned_cols=124 Identities=17% Similarity=0.260 Sum_probs=91.8
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCC-CCcccccccCCCCCc
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNK-QVSLPTATLDGPATP 329 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~-~~s~pt~~~~g~~~~ 329 (654)
+.|.+|+++|+|+|+|+|. ++++|||++|||+++ +.+++|++|.++++|+++||.||+ +.+....+ . .
T Consensus 407 ~~g~mG~~l~~A~G~ala~----~~~~vv~~~GDG~~~--~~~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~~-~---~- 475 (566)
T 2vbi_A 407 QWGHIGWSVPSAFGNAMGS----QDRQHVVMVGDGSFQ--LTAQEVAQMVRYELPVIIFLINNRGYVIEIAIH-D---G- 475 (566)
T ss_dssp TTCCTTTHHHHHHHHHHTC----TTSEEEEEEEHHHHH--HHGGGHHHHHHTTCCCEEEEEECSSCHHHHTTS-C---C-
T ss_pred cccchhhHHHHHHHHHHhC----CCCcEEEEEcchHHH--hhHHHHHHHHHhCCCcEEEEEECCcceEEEeec-c---C-
Confidence 5789999999999999985 478999999999998 567899999999999776666664 43211100 0 0
Q ss_pred hhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCC-----eEEeecCCCCHH
Q 006251 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGL-----YYIGPVDGHNVE 404 (654)
Q Consensus 330 vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~-----~~ig~vDGhDi~ 404 (654)
.| .+.-..+...++++||+ +++ .|+ +.+
T Consensus 476 ---------------~~-----------------------------~~~~~~d~~~~a~a~G~~~~~~~~~-~v~--~~~ 508 (566)
T 2vbi_A 476 ---------------PY-----------------------------NYIKNWDYAGLMEVFNAGEGHGLGL-KAT--TPK 508 (566)
T ss_dssp ---------------GG-----------------------------GCCCCCCTTTHHHHHHTTTCCCEEE-EEC--SHH
T ss_pred ---------------Cc-----------------------------cCCCCCCHHHHHHHcCCCCCCccEE-EeC--CHH
Confidence 00 00111234567999999 988 564 789
Q ss_pred HHHHHHHHhHhCCCCCCEEEEEEeecCCC
Q 006251 405 DLVTIFQRVKEMPAPGPVLIHVVTEKGKG 433 (654)
Q Consensus 405 ~L~~al~~ak~~~~~gP~lI~v~T~KG~G 433 (654)
+|.++++++++.. ++|++||+.|.+...
T Consensus 509 el~~al~~a~~~~-~gp~liev~~~~~~~ 536 (566)
T 2vbi_A 509 ELTEAIARAKANT-RGPTLIECQIDRTDC 536 (566)
T ss_dssp HHHHHHHHHHHCC-SSCEEEEEECCTTCC
T ss_pred HHHHHHHHHHhcC-CCcEEEEEEeCcccC
Confidence 9999999988632 689999999987654
No 45
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=99.16 E-value=3.3e-11 Score=136.41 Aligned_cols=124 Identities=20% Similarity=0.239 Sum_probs=90.0
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCC-CCcccccccCCCCCc
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNK-QVSLPTATLDGPATP 329 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~-~~s~pt~~~~g~~~~ 329 (654)
+.|.+|+++|+|+|+|+|. ++++|||++|||+++ +.+++|++|.++++|+++||.||+ +.+.... .+...
T Consensus 423 ~~g~mG~~l~~A~Gaala~----~~~~vv~~~GDG~~~--~~~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~--~~~~~- 493 (570)
T 2vbf_A 423 LWGSIGYTFPAALGSQIAD----KESRHLLFIGDGSLQ--LTVQELGLSIREKLNPICFIINNDGYTVEREI--HGPTQ- 493 (570)
T ss_dssp TTCCTTTHHHHHHHHHHHC----TTSEEEEEEEHHHHH--HHGGGHHHHHHTTCCCEEEEEESSSCHHHHHH--SCTTC-
T ss_pred cchhhhhhHHHHHHHHHhC----CCCcEEEEEcchhhh--cCHHHHHHHHHcCCCCEEEEEECCchHHHHHH--hccCC-
Confidence 6789999999999999996 478999999999998 567899999999999777776665 4221000 00000
Q ss_pred hhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCe-----EEeecCCCCHH
Q 006251 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLY-----YIGPVDGHNVE 404 (654)
Q Consensus 330 vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~-----~ig~vDGhDi~ 404 (654)
.| .++-..+...++++||++ ++ .|+ +.+
T Consensus 494 -------------------------------------------~~-~~~~~~d~~~~a~a~G~~~~~~~~~-~v~--~~~ 526 (570)
T 2vbf_A 494 -------------------------------------------SY-NDIPMWNYSKLPETFGATEDRVVSK-IVR--TEN 526 (570)
T ss_dssp -------------------------------------------GG-GCCCCCCGGGHHHHTTCCTTTEEEE-EEC--BHH
T ss_pred -------------------------------------------Cc-cCCCCCCHHHHHHHcCCCcCCcceE-Eec--CHH
Confidence 00 011123446679999998 66 554 799
Q ss_pred HHHHHHHHh-HhCCCCCCEEEEEEeecCC
Q 006251 405 DLVTIFQRV-KEMPAPGPVLIHVVTEKGK 432 (654)
Q Consensus 405 ~L~~al~~a-k~~~~~gP~lI~v~T~KG~ 432 (654)
++.++++++ ++ .++|++||+.|.+..
T Consensus 527 el~~al~~a~~~--~~~p~liev~~~~~~ 553 (570)
T 2vbf_A 527 EFVSVMKEAQAD--VNRMYWIELVLEKED 553 (570)
T ss_dssp HHHHHHHHHHHC--TTSEEEEEEECCTTC
T ss_pred HHHHHHHHHHhc--CCCcEEEEEEcCccc
Confidence 999999984 54 378999999997654
No 46
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=99.16 E-value=4e-11 Score=135.69 Aligned_cols=125 Identities=15% Similarity=0.151 Sum_probs=92.2
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCC--CcccccccCCCCC
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQ--VSLPTATLDGPAT 328 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~--~s~pt~~~~g~~~ 328 (654)
+.|++|+++|+|+|+|+| ++++|||++|||+++ +.+++|++|.++++|+++||.||+. .+.+.....+...
T Consensus 424 ~~g~~G~~l~~AiGaala-----~~~~vv~i~GDGsf~--~~~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~ 496 (568)
T 2c31_A 424 TWGVMGIGMGYCVAAAAV-----TGKPVIAVEGDSAFG--FSGMELETICRYNLPVTVIIMNNGGIYKGNEADPQPGVIS 496 (568)
T ss_dssp TTTCSSCHHHHHHHHHHH-----HCSCEEEEEEHHHHH--TTGGGHHHHHHTTCCEEEEEEESSBSSCSCCCCSBTTBCC
T ss_pred CCccccccHHHHHHHHhC-----CCCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCchhHHHHHHHhhcCCcc
Confidence 468899999999999998 478999999999998 6789999999999998888888863 2221110000000
Q ss_pred chhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHH
Q 006251 329 PVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (654)
Q Consensus 329 ~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~ 408 (654)
.+ ..-..+...++++||++++ .|+ +.++|.+
T Consensus 497 ~~----------------------------------------------~~~~~d~~~~a~a~G~~~~-~v~--~~~el~~ 527 (568)
T 2c31_A 497 CT----------------------------------------------RLTRGRYDMMMEAFGGKGY-VAN--TPAELKA 527 (568)
T ss_dssp TT----------------------------------------------BCCCCCHHHHHHTTTCEEE-EES--SHHHHHH
T ss_pred cC----------------------------------------------cCCCCCHHHHHHHcCCeEE-EeC--CHHHHHH
Confidence 00 0001233456999999998 554 7999999
Q ss_pred HHHHhHhCCCCCCEEEEEEeecCCC
Q 006251 409 IFQRVKEMPAPGPVLIHVVTEKGKG 433 (654)
Q Consensus 409 al~~ak~~~~~gP~lI~v~T~KG~G 433 (654)
+|+++.+. ++|++|++.|.+...
T Consensus 528 al~~a~~~--~~p~liev~~~~~~~ 550 (568)
T 2c31_A 528 ALEEAVAS--GKPCLINAMIDPDAG 550 (568)
T ss_dssp HHHHHHHH--TSCEEEEEEBCTTSS
T ss_pred HHHHHHhC--CCCEEEEEEeccccC
Confidence 99998764 789999999987653
No 47
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=99.15 E-value=7.6e-11 Score=133.18 Aligned_cols=125 Identities=16% Similarity=0.218 Sum_probs=92.4
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCC--Cccccccc-CCCC
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQ--VSLPTATL-DGPA 327 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~--~s~pt~~~-~g~~ 327 (654)
+.|++|+++|+|+|+|+| ++++|||++|||+++ +.+++|++|.++++|+++||.||+. .+.+.... .+..
T Consensus 419 ~~g~~G~~l~~AiGaa~a-----~~~~vv~i~GDGsf~--~~~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~ 491 (564)
T 2q28_A 419 TWGVMGIGMGYAIGASVT-----SGSPVVAIEGDSAFG--FSGMEIETICRYNLPVTIVIFNNGGIYRGDGVDLSGAGAP 491 (564)
T ss_dssp TTTCTTCHHHHHHHHHHH-----HCSCEEEEEEHHHHH--TTGGGHHHHHHTTCCEEEEEEECSBSSCSCCCCTTSSCCC
T ss_pred CCCcccchHHHHHHHhhc-----CCCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCchhHHHHHHHHhccCCc
Confidence 568999999999999998 478999999999997 5678899999999998888888863 23221100 0000
Q ss_pred CchhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhcc-CCChhhhhhhcCCeEEeecCCCCHHHH
Q 006251 328 TPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLI-SASGSTFFEELGLYYIGPVDGHNVEDL 406 (654)
Q Consensus 328 ~~vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~-~~~~~~lfea~G~~~ig~vDGhDi~~L 406 (654)
... ... ..+...++++||++++ .++ +.+++
T Consensus 492 ~~~----------------------------------------------~~~~~~d~~~~a~a~G~~~~-~v~--~~~el 522 (564)
T 2q28_A 492 SPT----------------------------------------------DLLHHARYDKLMDAFRGVGY-NVT--TTDEL 522 (564)
T ss_dssp CTT----------------------------------------------BCCTTCCGGGGGGGGTCEEE-EEC--SHHHH
T ss_pred ccc----------------------------------------------ccCCCCCHHHHHHHcCCeEE-EeC--CHHHH
Confidence 000 000 1234567999999998 554 79999
Q ss_pred HHHHHHhHhCCCCCCEEEEEEeecCCC
Q 006251 407 VTIFQRVKEMPAPGPVLIHVVTEKGKG 433 (654)
Q Consensus 407 ~~al~~ak~~~~~gP~lI~v~T~KG~G 433 (654)
.++|+++.+. ++|++|++.|.+...
T Consensus 523 ~~al~~a~~~--~~p~liev~~~~~~~ 547 (564)
T 2q28_A 523 RHALTTGIQS--RKPTIINVVIDPAAG 547 (564)
T ss_dssp HHHHHHHHHH--TSCEEEEEEBCTTSS
T ss_pred HHHHHHHHhC--CCCEEEEEEeccccC
Confidence 9999998764 789999999987653
No 48
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=99.14 E-value=4.4e-11 Score=135.29 Aligned_cols=124 Identities=19% Similarity=0.224 Sum_probs=90.9
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCC-CCcccccccCCCCCc
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNK-QVSLPTATLDGPATP 329 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~-~~s~pt~~~~g~~~~ 329 (654)
+.|.+|+++|+|+|+|+|. ++++|||++|||+++ +.+++|++|.++++|+++||.||+ +.+....+ .+
T Consensus 411 ~~g~~G~~l~~A~G~ala~----~~~~vv~i~GDGs~~--~~~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~-~~---- 479 (568)
T 2wvg_A 411 QWGHIGWSVPAAFGYAVGA----PERRNILMVGDGSFQ--LTAQEVAQMVRLKLPVIIFLINNYGYTIEVMIH-DG---- 479 (568)
T ss_dssp TTCCTTTHHHHHHHHHHHC----TTSEEEEEEEHHHHH--HHGGGHHHHHHTTCCCEEEEEECSSCHHHHTTS-CC----
T ss_pred CcchhhhHHHHHHHHHHhC----CCCcEEEEEcChhHh--ccHHHHHHHHHcCCCcEEEEEECCcceEeeeec-cC----
Confidence 5788999999999999996 478999999999998 578899999999999776665554 43211100 00
Q ss_pred hhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCC---------eEEeecCC
Q 006251 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGL---------YYIGPVDG 400 (654)
Q Consensus 330 vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~---------~~ig~vDG 400 (654)
.| .+.-..+...++++||+ .++ .++
T Consensus 480 ---------------~~-----------------------------~~~~~~d~~~~a~a~G~~~~~~~~~~~~~-~v~- 513 (568)
T 2wvg_A 480 ---------------PY-----------------------------NNIKNWDYAGLMEVFNGNGGYDSGAGKGL-KAK- 513 (568)
T ss_dssp ---------------GG-----------------------------GCCCCCCHHHHHHHHHCTTSSSCCCCEEE-EES-
T ss_pred ---------------CC-----------------------------cCCCCCCHHHHHHHhCCCcccccCCcceE-EeC-
Confidence 00 00001123456899999 787 564
Q ss_pred CCHHHHHHHHHHhHhCCCCCCEEEEEEeecCCC
Q 006251 401 HNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKG 433 (654)
Q Consensus 401 hDi~~L~~al~~ak~~~~~gP~lI~v~T~KG~G 433 (654)
+.+++.++++++.+. .++|++||+.|.+...
T Consensus 514 -~~~el~~al~~a~~~-~~gp~liev~~~~~~~ 544 (568)
T 2wvg_A 514 -TGGELAEAIKVALAN-TDGPTLIECFIGREDC 544 (568)
T ss_dssp -BHHHHHHHHHHHHHC-CSSCEEEEEECCTTCC
T ss_pred -CHHHHHHHHHHHHhc-CCCcEEEEEEcCcccc
Confidence 789999999998864 2689999999987654
No 49
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=99.12 E-value=5.1e-11 Score=134.60 Aligned_cols=125 Identities=17% Similarity=0.209 Sum_probs=88.5
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCCC-CcccccccCCCCCc
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQ-VSLPTATLDGPATP 329 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~~-~s~pt~~~~g~~~~ 329 (654)
+.|++|. +|+|+|+|+|. +++|||++|||+++ |..++|++|.++++|+++||.||+. .+...
T Consensus 415 ~~g~~G~-l~~A~Gaa~a~-----~~~vv~i~GDGsf~--~~~~eL~ta~~~~lpv~ivv~NN~~~~~~~~--------- 477 (556)
T 3hww_A 415 ASGIDGL-LSTAAGVQRAS-----GKPTLAIVGDLSAL--YDLNALALLRQVSAPLVLIVVNNNGGQIFSL--------- 477 (556)
T ss_dssp SCCSSSH-HHHHHHHHHHH-----CCCEEEEEEHHHHH--HTGGGHHHHTTCSSCEEEEEEESCC---------------
T ss_pred ccccccH-HHHHHHHHhcC-----CCcEEEEEccHHhh--hcchhhHhhcccCCCcEEEEEECCCCCcccC---------
Confidence 3567777 99999999982 78899999999997 6778899999999999988888874 22100
Q ss_pred hhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHH
Q 006251 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (654)
Q Consensus 330 vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~a 409 (654)
+ ...+ ...+.+....-..+...++++||++++ .++ +.+++.++
T Consensus 478 ---~----~~~~---------------------------~~~~~~~~~~~~~d~~~~a~a~G~~~~-~v~--~~~~l~~a 520 (556)
T 3hww_A 478 ---L----PTPQ---------------------------SERERFYLMPQNVHFEHAAAMFELKYH-RPQ--NWQELETA 520 (556)
T ss_dssp ---------------------------------------------CCCCCCCCSHHHHHHTTCEEE-CCS--SHHHHHHH
T ss_pred ---C----CCcc---------------------------hhHHHhccCCCCCCHHHHHHHcCCcEE-ecC--CHHHHHHH
Confidence 0 0000 000000011123355678999999998 554 78999999
Q ss_pred HHHhHhCCCCCCEEEEEEeecC
Q 006251 410 FQRVKEMPAPGPVLIHVVTEKG 431 (654)
Q Consensus 410 l~~ak~~~~~gP~lI~v~T~KG 431 (654)
|+++++. ++|++||+.|.+.
T Consensus 521 l~~a~~~--~gp~liev~~~~~ 540 (556)
T 3hww_A 521 FADAWRT--PTTTVIEMVVNDT 540 (556)
T ss_dssp HHHHTTS--SSEEEEEEECCSS
T ss_pred HHHHHhC--CCCEEEEEECCcc
Confidence 9998764 7999999999653
No 50
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=99.10 E-value=5.2e-11 Score=135.84 Aligned_cols=129 Identities=19% Similarity=0.215 Sum_probs=90.5
Q ss_pred CcccchhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCC-CCcccccccCCCCCc
Q 006251 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNK-QVSLPTATLDGPATP 329 (654)
Q Consensus 251 g~G~lG~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~-~~s~pt~~~~g~~~~ 329 (654)
|.|.+|+++|+|+|+|+|. +++|||++|||+++. .+++|++|.++++|+++||.||+ +.+.....
T Consensus 453 G~~~ig~~l~~AiGaala~-----~~~vv~i~GDGsf~~--~~~eL~ta~~~~lp~~ivv~NN~~~~i~~~~~------- 518 (604)
T 2x7j_A 453 GANGIDGVVSSAMGVCEGT-----KAPVTLVIGDLSFYH--DLNGLLAAKKLGIPLTVILVNNDGGGIFSFLP------- 518 (604)
T ss_dssp TTCCSSSHHHHHHHHHHHH-----TSCEEEEEEHHHHHH--TGGGGHHHHHHCCCEEEEEEECSSCGGGGGSG-------
T ss_pred CcCCcCcHHHHHHHHHhcC-----CCcEEEEEccHHHHh--HHHHHHHhhhcCCCeEEEEEeCCCCcccccCC-------
Confidence 4567889999999999984 688999999999984 56889999999999887776665 43211000
Q ss_pred hhhhhHHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHH
Q 006251 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (654)
Q Consensus 330 vgals~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~a 409 (654)
..+....| +.+.......+...++++||++++ .|+ +.+++.++
T Consensus 519 ---------~~q~~~~~-------------------------~~~~~~~~~~d~~~~a~a~G~~~~-~v~--~~~el~~a 561 (604)
T 2x7j_A 519 ---------QASEKTHF-------------------------EDLFGTPTGLDFKHAAALYGGTYS-CPA--SWDEFKTA 561 (604)
T ss_dssp ---------GGSCHHHH-------------------------HHHTTCCCCCCTHHHHHHTTCEEE-CCS--SHHHHHHH
T ss_pred ---------CCccchhh-------------------------HhhccCCCCCCHHHHHHHcCCeEE-ecC--CHHHHHHH
Confidence 00000000 011111122355678999999998 565 78999999
Q ss_pred HHHhHhCCCCCCEEEEEEeecCC
Q 006251 410 FQRVKEMPAPGPVLIHVVTEKGK 432 (654)
Q Consensus 410 l~~ak~~~~~gP~lI~v~T~KG~ 432 (654)
++++.+ .++|++|++.|.+..
T Consensus 562 l~~a~~--~~gp~liev~~~~~~ 582 (604)
T 2x7j_A 562 YAPQAD--KPGLHLIEIKTDRQS 582 (604)
T ss_dssp CCCCCS--SCCEEEEEEECCHHH
T ss_pred HHHHHh--CCCCEEEEEECCccc
Confidence 988765 379999999997543
No 51
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=99.02 E-value=1.8e-10 Score=130.62 Aligned_cols=128 Identities=16% Similarity=0.133 Sum_probs=80.4
Q ss_pred hhhHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHHhhcCCCEEEEEECCC-CCcccccccCCCCCchhhhh
Q 006251 256 STSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNK-QVSLPTATLDGPATPVGALS 334 (654)
Q Consensus 256 G~~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EAln~A~~~~lnLi~Il~dN~-~~s~pt~~~~g~~~~vgals 334 (654)
|+++|+|+|+|+ ++++|||++|||+++ |.+++|++|.++++|+++||.||+ +.+....
T Consensus 439 ~g~l~~AiGaa~------~~~~vv~i~GDGsf~--~~~~eL~ta~~~~l~~~ivv~NN~~~g~~~~~------------- 497 (578)
T 3lq1_A 439 DGVVSSALGASV------VFQPMFLLIGDLSFY--HDMNGLLMAKKYKMNLTIVIVNNDGGGIFSFL------------- 497 (578)
T ss_dssp SSHHHHHHHHTT------TSSSEEEEEEHHHHH--HTGGGGHHHHHTTCCEEEEEECCC---------------------
T ss_pred ccHHHHHHHHhc------CCCCEEEEEchHHHH--hhHHHHHhhccCCCCeEEEEEECCcCcccccc-------------
Confidence 346999999863 378999999999998 778899999999999999998886 3221100
Q ss_pred HHHHHhhhchhHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCCCCHHHHHHHHHHhH
Q 006251 335 SALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVK 414 (654)
Q Consensus 335 ~~l~~~~~~~~~~~~r~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDGhDi~~L~~al~~ak 414 (654)
...+....|.. +.......+...++++||+.++ .|+ +.++|.++|++++
T Consensus 498 ---~~~~~~~~~~~-------------------------~~~~~~~~d~~~~a~a~G~~~~-~v~--~~~el~~al~~a~ 546 (578)
T 3lq1_A 498 ---PQANEPKYFES-------------------------LFGTSTELDFRFAAAFYDADYH-EAK--SVDELEEAIDKAS 546 (578)
T ss_dssp ---------------------------------------------CCCTHHHHHHTTCEEE-ECC--SHHHHHHHHHHHT
T ss_pred ---ccccccchhhh-------------------------hccCCCCCCHHHHHHHcCCceE-ecC--CHHHHHHHHHHHH
Confidence 00000000000 0000112355678999999998 554 8899999999988
Q ss_pred hCCCCCCEEEEEEeecCCCCChh
Q 006251 415 EMPAPGPVLIHVVTEKGKGYPPA 437 (654)
Q Consensus 415 ~~~~~gP~lI~v~T~KG~G~~~a 437 (654)
+. ++|++||+.|.+.....+.
T Consensus 547 ~~--~gp~liev~~~~~~~~~~~ 567 (578)
T 3lq1_A 547 YH--KGLDIIEVKTNRHENKANH 567 (578)
T ss_dssp TS--SSEEEEEEC----------
T ss_pred hC--CCCEEEEEECCccccHHHH
Confidence 64 7999999999876655443
No 52
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=98.69 E-value=4.4e-08 Score=106.34 Aligned_cols=153 Identities=12% Similarity=0.072 Sum_probs=96.0
Q ss_pred hhHHHHHHHHHHHHHhhCCcEEEEecCccCCCCh-hhHHH---hCCCCccccchhHHHHHHHHHHHHhcCCeeEEeehHH
Q 006251 465 LTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGL-NYFQK---RFPDRCFDVGIAEQHAVTFAAGLASEGVKPFCAIYSS 540 (654)
Q Consensus 465 ~s~~~a~~~aL~~~~~~d~~vvvl~aDlg~s~~l-~~f~~---~fp~R~id~GIaE~~mvg~AaGlA~~G~~Pi~~tfa~ 540 (654)
++=.+++.+++.+. +.+++..-+ ...++.+ ..|.+ ++..+++.+. +|++++++|.|+|+.|.+|++++..+
T Consensus 23 ~~GneAva~~~~~a---g~~~v~~yP-gtP~t~i~~~l~~~~~~~g~~~i~~e-~E~~a~~~a~Gaa~aG~r~~~~ts~~ 97 (395)
T 1yd7_A 23 IQGDEAIARAAILA---GCRFYAGYP-ITPASEIFEAMALYMPLVDGVVIQME-DEIASIAAAIGASWAGAKAMTATSGP 97 (395)
T ss_dssp EEHHHHHHHHHHHH---TCCEEEECC-BTTTBCHHHHHHHHGGGGTCEEEECS-CHHHHHHHHHHHHHTTCCEEEEEETT
T ss_pred eEHHHHHHHHHHHc---CCCEEEEEE-CcchHHHHHHHHHhhhhcCcEEEEeC-CHHHHHHHHHHHHHhCCcEEEEeCch
Confidence 34456666665542 344443322 2223333 44443 4567889987 99999999999999999999999888
Q ss_pred HHHhHHHHHHHhhhcCCCCEEEEEecCCccC---CCCCCCCChhhHHHHhcCC--CCEEEecCCHHHHHHHHHHHHh---
Q 006251 541 FLQRGYDQVVHDVDLQKLPVRFAMDRAGLVG---ADGPTHCGAFDVTFMSCLP--NMVVMAPSDEAELMHMVATAAV--- 612 (654)
Q Consensus 541 Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~~g---~dG~tHq~~edla~~r~iP--nl~V~~PsD~~E~~~ll~~al~--- 612 (654)
++.+++|||.+ ++..++|++++....+..+ ...+.|+...+. .+.+.| ++.|+.|++++|+..++..|+.
T Consensus 98 G~~~~~d~l~~-aa~~~~P~Vi~~~~~~~~~~g~~~~~~~sd~~~~-~~~~~g~~g~~vl~p~~~qea~~l~~~A~~lA~ 175 (395)
T 1yd7_A 98 GFSLMQENIGY-AVMTETPVVIVDVQRSGPSTGQPTLPAQGDIMQA-IWGTHGDHSLIVLSPSTVQEAFDFTIRAFNLSE 175 (395)
T ss_dssp HHHHHTTTCC-----CCCCEEEEEEC---------------------------CCCCEEECCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHhcCCCEEEEEeeCCCCCCCCCcccchhHHHHH-HhccCCCcceEEEeCCCHHHHHHHHHHHHHHHH
Confidence 88889999865 5678999998875443222 122234445553 556666 9999999999999999999873
Q ss_pred CCCCcEEEEecC
Q 006251 613 IDDRPSCFRFPR 624 (654)
Q Consensus 613 ~~~~P~~ir~~r 624 (654)
+.+.||++++++
T Consensus 176 ~~~~PVi~~~~~ 187 (395)
T 1yd7_A 176 KYRTPVILLTDA 187 (395)
T ss_dssp HHTSEEEEEECH
T ss_pred HHCCCEEEEcch
Confidence 456899999985
No 53
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=98.22 E-value=3.4e-06 Score=103.22 Aligned_cols=114 Identities=18% Similarity=0.312 Sum_probs=77.5
Q ss_pred CCeEEEEEcCC-CcccchHHHHHHHHhhcCCCEEEEEECCCC-CcccccccCCCCCchhhhhHHHHHhhhchhHHHHHHH
Q 006251 275 NNNVISVIGDG-AMTAGQAYEAMNNAGFLDANLIVVLNDNKQ-VSLPTATLDGPATPVGALSSALSKLQASTNFRKLREA 352 (654)
Q Consensus 275 ~~~VvaviGDG-al~eG~~~EAln~A~~~~lnLi~Il~dN~~-~s~pt~~~~g~~~~vgals~~l~~~~~~~~~~~~r~~ 352 (654)
++.|||+.||| +++ |.+..|.+|.+.+.|+++||.||+. .++. .+.. ...+.+..+. +
T Consensus 953 ~~~Vv~i~GDG~~~~--mg~~eL~ta~~~~~~v~iiVlnN~~yg~tg-~Q~s-~~t~~~~~t~-~--------------- 1012 (1231)
T 2c42_A 953 KKSVWIFGGDGWAYD--IGYGGLDHVLASGEDVNVFVMDTEVYSNTG-GQSS-KATPTGAVAK-F--------------- 1012 (1231)
T ss_dssp CCEEEEEEEHHHHHT--TTHHHHHHHHHTTCSCEEEEEECSSBTTTT-CBCC-TTSCTTCCBB-T---------------
T ss_pred CCcEEEEeCcHHHHH--cchHHHHHHHHhCCCeEEEEEECHHHHhHH-hhhc-cCCCCCceee-e---------------
Confidence 37899999999 887 6678999999999999999999974 3332 1211 1111111000 0
Q ss_pred HHHHHhhcCCchHHHHHHHHHHhhhccCCChhhhhhhcCCeEEeecCC-CCHHHHHHHHHHhHhCCCCCCEEEEEEee
Q 006251 353 AKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDG-HNVEDLVTIFQRVKEMPAPGPVLIHVVTE 429 (654)
Q Consensus 353 ~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~ig~vDG-hDi~~L~~al~~ak~~~~~gP~lI~v~T~ 429 (654)
...| +..-.++...+++++|+.|+..+.= .+.+++.++|+++.+. +||++|++.+.
T Consensus 1013 -----~~~g--------------~~~~~~D~~~iA~a~G~~~va~~~v~~~~~~l~~al~eAl~~--~GP~lI~v~~~ 1069 (1231)
T 2c42_A 1013 -----AAAG--------------KRTGKKDLARMVMTYGYVYVATVSMGYSKQQFLKVLKEAESF--PGPSLVIAYAT 1069 (1231)
T ss_dssp -----BTTC--------------CSSCCCCHHHHHHTTSSSEEEEECTTTCHHHHHHHHHHHHHS--SSCEEEEEECC
T ss_pred -----cccC--------------CCCCchhHHHHHHHCCCCEEEEEeccCCHHHHHHHHHHHHhc--CCCEEEEEeec
Confidence 0000 0011234456799999999866543 5999999999999875 79999999886
No 54
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=97.29 E-value=0.0011 Score=81.24 Aligned_cols=114 Identities=16% Similarity=0.078 Sum_probs=85.3
Q ss_pred CCccccchhHHHHHHHHHHHHhcCCeeEEeehHHHHHhHHHHHHHhhhcCCCCEEEEEecCCcc--C-CCCCCCCChhhH
Q 006251 507 DRCFDVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLV--G-ADGPTHCGAFDV 583 (654)
Q Consensus 507 ~R~id~GIaE~~mvg~AaGlA~~G~~Pi~~tfa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~~--g-~dG~tHq~~edl 583 (654)
.++++...+|.++++++.|.++.|.++++.|-+.=+..+.+.+. .++...+|++++....++. | .-.+.|+ |.
T Consensus 54 ~~~v~~~esE~aA~~aaiGAa~aGaR~~t~Ts~~Gl~lm~e~l~-~~ag~~~P~Vi~va~R~g~~~glsi~~~hs---d~ 129 (1231)
T 2c42_A 54 TLTIREMQSEAGAAGAVHGALAAGALTTTFTASQGLLLMIPNMY-KISGELLPGVFHVTARAIAAHALSIFGDHQ---DI 129 (1231)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHTTCCEEEEECHHHHHHHHHHHH-HHHHTTCCCEEEEEECCCCSSSBCCSCCSH---HH
T ss_pred ceEEEecCChHHHHHHHHHHHHcCChHhhhccHHHHHHHHHHHH-HHhCCCCCEEEEECCCCccCCCCcCCCchh---hH
Confidence 47999999999999999999999999999984443444557754 3455789988876433322 1 1234454 53
Q ss_pred HHHhcCCCCEEEecCCHHHHHHHHHHHH---hCCCCcEEEEecCC
Q 006251 584 TFMSCLPNMVVMAPSDEAELMHMVATAA---VIDDRPSCFRFPRG 625 (654)
Q Consensus 584 a~~r~iPnl~V~~PsD~~E~~~ll~~al---~~~~~P~~ir~~r~ 625 (654)
+....+|+.|++|++++|+..+...|+ .+...|+++++..-
T Consensus 130 -~~ar~~G~~vl~pss~QEa~dl~~~Af~lAek~~~PVi~~~Dg~ 173 (1231)
T 2c42_A 130 -YAARQTGFAMLASSSVQEAHDMALVAHLAAIESNVPFMHFFDGF 173 (1231)
T ss_dssp -HTTTTSSCEEEECCSHHHHHHHHHHHHHHHHHHCCCEEEEEETT
T ss_pred -HHHhcCCcEEEECCCHHHHHHHHHHHHHHHHHcCCCEEEEecCc
Confidence 457789999999999999999988872 24678999998763
No 55
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=88.15 E-value=1.5 Score=49.35 Aligned_cols=113 Identities=10% Similarity=-0.034 Sum_probs=75.2
Q ss_pred CccccchhHHHHHHHHHHHHhc-CCeeEEee-hHHHHHhHHHHHHHhhhcCCCCEEEEEecCCc--cCCCCCCCCChhhH
Q 006251 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFDV 583 (654)
Q Consensus 508 R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~t-fa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~--~g~dG~tHq~~edl 583 (654)
|++- ...|++++.+|.|+|+. |...+|.. ..+=+..++.-| .++...+.||+++...... .|. ..+|.....
T Consensus 45 ~~i~-~~~E~~Aa~~A~GyAr~tgk~~v~~~tsGpG~~N~~~gl-~~A~~~~vPll~Itg~~p~~~~g~--~~~Q~~d~~ 120 (590)
T 1v5e_A 45 KFLQ-VKHEEVGAMAAVMQSKFGGNLGVTVGSGGPGASHLINGL-YDAAMDNIPVVAILGSRPQRELNM--DAFQELNQN 120 (590)
T ss_dssp EEEE-CSSHHHHHHHHHHHHHTTCCCCEEEECTTHHHHTTHHHH-HHHHHHTCCEEEEEEECCGGGTTT--TCTTCCCCH
T ss_pred eEEe-eCCHHHHHHHHHHHHHHHCCCEEEEeCcChHHHHHHHHH-HHHHhcCCCEEEEcCCCCcccCCC--CcccccCHH
Confidence 4444 48999999999999998 54444443 655555555554 3455678999988643332 232 236666667
Q ss_pred HHHhcCCCCEEEecCCHHHHHHHHHHHH----hCCCCcEEEEecCCC
Q 006251 584 TFMSCLPNMVVMAPSDEAELMHMVATAA----VIDDRPSCFRFPRGN 626 (654)
Q Consensus 584 a~~r~iPnl~V~~PsD~~E~~~ll~~al----~~~~~P~~ir~~r~~ 626 (654)
.+++.+-.. .+.+.++.++..+++.|+ ....+||+| +|...
T Consensus 121 ~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l-iP~dv 165 (590)
T 1v5e_A 121 PMYDHIAVY-NRRVAYAEQLPKLVDEAARMAIAKRGVAVLE-VPGDF 165 (590)
T ss_dssp HHHHTTCSE-EEECCSGGGHHHHHHHHHHHHHHTTSEEEEE-EETTG
T ss_pred HHHHhhccE-EEEeCCHHHHHHHHHHHHHHHhcCCCceEEE-Eccch
Confidence 889988765 666777777666555544 334589999 99864
No 56
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=86.78 E-value=4.2 Score=45.62 Aligned_cols=114 Identities=16% Similarity=0.130 Sum_probs=76.6
Q ss_pred CCccccchhHHHHHHHHHHHHhc-CCeeEEee-hHHHHHhHHHHHHHhhhcCCCCEEEEEecCCc--cCCCCCCCCChhh
Q 006251 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFD 582 (654)
Q Consensus 507 ~R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~t-fa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~--~g~dG~tHq~~ed 582 (654)
=|++.+ ..|++++.+|.|+|+. |...+|.+ ..+=+..++.-| ..+...+.||+++...... .|. | .+|.+..
T Consensus 51 i~~i~~-~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~~~gv-~~A~~~~vPll~itg~~~~~~~g~-~-~~Q~~d~ 126 (590)
T 1ybh_A 51 IRNVLP-RHEQGGVFAAEGYARSSGKPGICIATSGPGATNLVSGL-ADALLDSVPLVAITGQVPRRMIGT-D-AFQETPI 126 (590)
T ss_dssp CEECCC-SSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHTTHHHH-HHHHHHTCCEEEEEEECCGGGTTT-T-CTTCCCH
T ss_pred ccEEee-CCHHHHHHHHHHHHHHHCCCEEEEeccCchHHHHHHHH-HHHHhhCCCEEEEeCcCCccccCC-C-cccccCH
Confidence 356654 8999999999999997 65555443 544444444443 4455678999988633222 232 2 4666777
Q ss_pred HHHHhcCCCCEEEecCCHHHHHHHHHHHHhC----CCCcEEEEecCC
Q 006251 583 VTFMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (654)
Q Consensus 583 la~~r~iPnl~V~~PsD~~E~~~ll~~al~~----~~~P~~ir~~r~ 625 (654)
..+++.+-.. .+...++.++..+++.|+.. ..+||+|-+|..
T Consensus 127 ~~~~~~~~k~-~~~v~~~~~i~~~l~~A~~~a~~~~~GPV~l~iP~d 172 (590)
T 1ybh_A 127 VEVTRSITKH-NYLVMDVEDIPRIIEEAFFLATSGRPGPVLVDVPKD 172 (590)
T ss_dssp HHHHGGGSSE-EEECCCGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred HHHHHHHhCe-EEecCCHHHHHHHHHHHHHHHhhCCCceEEEEeCcc
Confidence 7888888765 45556777777777766642 368999998875
No 57
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=84.59 E-value=7.2 Score=43.41 Aligned_cols=151 Identities=15% Similarity=0.135 Sum_probs=89.9
Q ss_pred hhHHHHHHHHHHHHHhhCCcEEEEecCccCCCC-hhhHHHhCCCCccccchhHHHHHHHHHHHHhc-CCeeEEee-hHHH
Q 006251 465 LTYTQYFAESLIKEAETDDKIVAIHAAMGGGTG-LNYFQKRFPDRCFDVGIAEQHAVTFAAGLASE-GVKPFCAI-YSSF 541 (654)
Q Consensus 465 ~s~~~a~~~aL~~~~~~d~~vvvl~aDlg~s~~-l~~f~~~fp~R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~t-fa~F 541 (654)
++..+++.+.|.+..- +.++.+..+ .... ++.|.+. +=|++.+ ..|+++..+|.|+|+. |...+|.+ ..+=
T Consensus 4 ~~~a~~l~~~L~~~GV--~~vfg~PG~--~~~~l~~al~~~-~i~~i~~-~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG 77 (563)
T 2uz1_A 4 ITGGELVVRTLIKAGV--EHLFGLHGA--HIDTIFQACLDH-DVPIIDT-RHEAAAGHAAEGYARAGAKLGVALVTAGGG 77 (563)
T ss_dssp EEHHHHHHHHHHHHTC--CCEEECCCG--GGHHHHHHHHHH-TCCEEEC-SSHHHHHHHHHHHHHHHTSCEEEEECTTHH
T ss_pred cCHHHHHHHHHHHCCC--CEEEECCCC--chHHHHHHHHhc-CCcEEee-CCHHHHHHHHHHHHHHhCCCEEEEEccCcc
Confidence 3445556665554432 344443321 1111 2444433 4577765 9999999999999997 65545443 5443
Q ss_pred HHhHHHHHHHhhhcCCCCEEEEEecCCc--cCCCCCCCCC-hhhHHHHhcCCCCEEEecCCHHHHHHHHH----HHHhCC
Q 006251 542 LQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCG-AFDVTFMSCLPNMVVMAPSDEAELMHMVA----TAAVID 614 (654)
Q Consensus 542 l~ra~dQI~~~~a~~~lpV~~v~~~~G~--~g~dG~tHq~-~edla~~r~iPnl~V~~PsD~~E~~~ll~----~al~~~ 614 (654)
+..++.-| .++-..+.||+++...... .|. | .||. .....+++.+-.. .+...+++++..+++ .|....
T Consensus 78 ~~N~~~~l-~~A~~~~~Pll~itg~~~~~~~~~-~-~~Q~~~d~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~a~~~~ 153 (563)
T 2uz1_A 78 FTNAVTPI-ANAWLDRTPVLFLTGSGALRDDET-N-TLQAGIDQVAMAAPITKW-AHRVMATEHIPRLVMQAIRAALSAP 153 (563)
T ss_dssp HHTTHHHH-HHHHHHTCCEEEEEEECCGGGTTS-C-CTTCCCCHHHHHGGGCSE-EEECCCGGGHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHH-HHHHhcCCCEEEEeCCCCcccCCc-h-hhhhhccHHHHhhhhhce-EEEcCCHHHHHHHHHHHHHHhcCCC
Confidence 44444444 3455678999988643332 232 2 3777 7777888888754 344455655555555 444345
Q ss_pred CCcEEEEecCC
Q 006251 615 DRPSCFRFPRG 625 (654)
Q Consensus 615 ~~P~~ir~~r~ 625 (654)
.+|++|-+|..
T Consensus 154 ~GPV~l~iP~d 164 (563)
T 2uz1_A 154 RGPVLLDLPWD 164 (563)
T ss_dssp CCCEEEEEEHH
T ss_pred CceEEEEeCHH
Confidence 69999999876
No 58
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=84.14 E-value=8.6 Score=43.11 Aligned_cols=113 Identities=8% Similarity=-0.045 Sum_probs=72.6
Q ss_pred CccccchhHHHHHHHHHHHHhc-CCeeEE-eehHHHHHhHHHHHHHhhhcCCCCEEEEEecCCc--cCCCCCCCCChhhH
Q 006251 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFC-AIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFDV 583 (654)
Q Consensus 508 R~id~GIaE~~mvg~AaGlA~~-G~~Pi~-~tfa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~--~g~dG~tHq~~edl 583 (654)
|++.+ ..|+++.-+|-|+|.. |...+| .|..+=+..++.-| ..+...+.||+++...... .+. |..||.+...
T Consensus 45 ~~v~~-~hE~~Aa~~A~GyAr~tg~p~v~~~TsGpG~~N~~~gv-~~A~~~~vPll~itg~~~~~~~~~-~~~~Q~~d~~ 121 (589)
T 2pgn_A 45 RVINP-ATELGGAWMVNGYNYVKDRSAAVGAWHCVGNLLLHAAM-QEARTGRIPAVHIGLNSDGRLAGR-SEAAQQVPWQ 121 (589)
T ss_dssp TCBCC-SSHHHHHHHHHHHHHHHTSCCEEEEEEGGGGGGCHHHH-HHHHHTTCCEEEEEEESCGGGTTC-TTCSSCCCGG
T ss_pred eEEEe-CcHHHHHHHHHHHHHHHCCCEEEEEecCchHHHHHHHH-HHHHhcCCCEEEEecCCcccccCC-CCcccccChh
Confidence 66665 8999999999999997 644333 44655444555544 4556789999988633322 232 2157777777
Q ss_pred HHHhcCCCCEEEecCCHHHHHHHHH----HHHhCCCCcEEEEecCC
Q 006251 584 TFMSCLPNMVVMAPSDEAELMHMVA----TAAVIDDRPSCFRFPRG 625 (654)
Q Consensus 584 a~~r~iPnl~V~~PsD~~E~~~ll~----~al~~~~~P~~ir~~r~ 625 (654)
. ++.+.-.. +...++.++...++ .|.....+||+|-+|..
T Consensus 122 ~-~~~~tk~~-~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 165 (589)
T 2pgn_A 122 S-FTPIARST-QRVERLDKVGEAIHEAFRVAEGHPAGPAYVDIPFD 165 (589)
T ss_dssp G-GTTTSSEE-EECCSGGGHHHHHHHHHHHHTSSSCCEEEEEEETH
T ss_pred h-ccccEEEE-eecCCHHHHHHHHHHHHHHHhcCCCccEEEEeCHh
Confidence 7 77776544 34445555555444 44333458999999886
No 59
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=83.52 E-value=7 Score=44.86 Aligned_cols=112 Identities=17% Similarity=0.062 Sum_probs=74.0
Q ss_pred CccccchhHHHHHHHHHHHHhc-CCeeEEe-ehHHHHHhHHHHHHHhhhcCCCCEEEEEecCCc--cCCCCCCCCChhhH
Q 006251 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFDV 583 (654)
Q Consensus 508 R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~-tfa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~--~g~dG~tHq~~edl 583 (654)
|++.+ .-|+++..+|.|+|.. |...+|. |..+=...++.-| .++...+.||+++...... .|. ..+|.+...
T Consensus 122 ~~v~~-~hE~~Aa~aAdGyAr~tGkpgvv~~TsGpG~~N~~~gi-a~A~~d~vPllvItG~~~~~~~g~--~a~Q~~Dq~ 197 (677)
T 1t9b_A 122 NFVLP-KHEQGAGHMAEGYARASGKPGVVLVTSGPGATNVVTPM-ADAFADGIPMVVFTGQVPTSAIGT--DAFQEADVV 197 (677)
T ss_dssp EEECC-SSHHHHHHHHHHHHHHHSSCEEEEECSTHHHHTTHHHH-HHHHHHTCCEEEEEEECCTTTTTS--CCTTCCCHH
T ss_pred eEEEe-CChHHHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHH-HHHHHcCCCEEEEeCCCChhhcCC--CCccccCHH
Confidence 55554 8999999999999997 6554444 4555444444443 4455678999988633222 232 246767777
Q ss_pred HHHhcCCCCEEEecCCHHHHHHHHHHHHh----CCCCcEEEEecC
Q 006251 584 TFMSCLPNMVVMAPSDEAELMHMVATAAV----IDDRPSCFRFPR 624 (654)
Q Consensus 584 a~~r~iPnl~V~~PsD~~E~~~ll~~al~----~~~~P~~ir~~r 624 (654)
.+++.+--..+. ..++.++..+++.|+. ...+||+|-+|+
T Consensus 198 ~i~~~~tk~~~~-v~~~~~i~~~i~~A~~~A~~grpGPV~l~lP~ 241 (677)
T 1t9b_A 198 GISRSCTKWNVM-VKSVEELPLRINEAFEIATSGRPGPVLVDLPK 241 (677)
T ss_dssp HHTGGGSSEEEE-CCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEH
T ss_pred HHhhhheeEEEE-cCCHHHHHHHHHHHHHHHhhCCCceEEEEcCH
Confidence 888877665444 4567777776666654 357899999984
No 60
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=83.32 E-value=4.6 Score=45.07 Aligned_cols=115 Identities=14% Similarity=0.064 Sum_probs=70.2
Q ss_pred CccccchhHHHHHHHHHHHHhc-CCeeEEe-ehHHHHHhHHHHHHHhhhcCCCCEEEEEecCCccCCCCCCCCChhhHHH
Q 006251 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTF 585 (654)
Q Consensus 508 R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~-tfa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~~g~dG~tHq~~edla~ 585 (654)
|++.+ .-|+++.-+|.|+|.. |...+|. |..+=+..++.-| .++...+.||+++.........+-..||.+....+
T Consensus 50 ~~v~~-~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~~~~l-~~A~~~~vPll~itg~~~~~~~~~~~~Q~~d~~~~ 127 (566)
T 1ozh_A 50 RIIPV-RHEANAAFMAAAVGRITGKAGVALVTSGPGCSNLITGM-ATANSEGDPVVALGGAVKRADKAKQVHQSMDTVAM 127 (566)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHHHSSCEEEEECSTHHHHTTHHHH-HHHHHHTCCEEEEEEECCTTTC------CCCHHHH
T ss_pred cEEEe-CCHHHHHHHHHHHHHHHCCCEEEEEccChHHHHHHHHH-HHHHhcCCCEEEEeCCCccccCCCCcccccCHHHH
Confidence 56655 8999999999999996 6544444 3544334444443 34556689999886333221111134777777788
Q ss_pred HhcCCCCEEEecCCHHHHHHHH----HHHHhCCCCcEEEEecCC
Q 006251 586 MSCLPNMVVMAPSDEAELMHMV----ATAAVIDDRPSCFRFPRG 625 (654)
Q Consensus 586 ~r~iPnl~V~~PsD~~E~~~ll----~~al~~~~~P~~ir~~r~ 625 (654)
++.+.-.. +...++.++...+ +.|.....+||+|-+|..
T Consensus 128 ~~~~tk~~-~~v~~~~~~~~~i~~A~~~A~~~r~GPV~l~iP~d 170 (566)
T 1ozh_A 128 FSPVTKYA-IEVTAPDALAEVVSNAFRAAEQGRPGSAFVSLPQD 170 (566)
T ss_dssp HGGGCSEE-EECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred HHHHhheE-EEcCCHHHHHHHHHHHHHHHhcCCCCeEEEEeChh
Confidence 88887544 4445555555444 445433469999999875
No 61
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=83.12 E-value=5.6 Score=44.47 Aligned_cols=116 Identities=17% Similarity=0.071 Sum_probs=74.1
Q ss_pred CCccccchhHHHHHHHHHHHHhc-CCeeEEe-ehHHHHHhHHHHHHHhhhcCCCCEEEEEecCCc--cCCCCCCCCChhh
Q 006251 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFD 582 (654)
Q Consensus 507 ~R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~-tfa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~--~g~dG~tHq~~ed 582 (654)
=|++.+ ..|+++.-+|-|+|.. |...+|. |..+=+..++.-| ..+...+.||+++...... .|. +..||.+..
T Consensus 49 i~~i~~-~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~~~~v-~~A~~~~~Pll~itg~~~~~~~~~-~~~~Q~~d~ 125 (573)
T 2iht_A 49 IDFVLT-RHEFTAGVAADVLARITGRPQACWATLGPGMTNLSTGI-ATSVLDRSPVIALAAQSESHDIFP-NDTHQCLDS 125 (573)
T ss_dssp CEEEEC-SSHHHHHHHHHHHHHHHCSCEEEEECTTHHHHHHHHHH-HHHHHHTCCEEEEEEESCGGGCCT-TTSTTCCCH
T ss_pred CeEEee-CCHHHHHHHHHHHHHHHCCCEEEEEccCchHHHHHHHH-HHHHhhCCCEEEEcccCcccccCC-cCccccCCH
Confidence 455554 8999999999999997 5443433 4555444444444 4455678999988643322 232 135888888
Q ss_pred HHHHhcCCCCEEEecCCHHHHHHHHHHHH----hCCCCcEEEEecCCC
Q 006251 583 VTFMSCLPNMVVMAPSDEAELMHMVATAA----VIDDRPSCFRFPRGN 626 (654)
Q Consensus 583 la~~r~iPnl~V~~PsD~~E~~~ll~~al----~~~~~P~~ir~~r~~ 626 (654)
..+++.+.-... ...++.++...++.|+ ....+||+|-+|...
T Consensus 126 ~~~~~~~~k~~~-~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv 172 (573)
T 2iht_A 126 VAIVAPMSKYAV-ELQRPHEITDLVDSAVNAAMTEPVGPSFISLPVDL 172 (573)
T ss_dssp HHHHGGGSSEEE-ECCSGGGHHHHHHHHHHHHTBSSCCCEEEEEEHHH
T ss_pred HHHHHhHhhEEE-EcCCHHHHHHHHHHHHHHHhcCCCceEEEEecchH
Confidence 888998876543 4445555555554443 334589999998753
No 62
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=81.98 E-value=11 Score=42.31 Aligned_cols=113 Identities=12% Similarity=0.052 Sum_probs=74.2
Q ss_pred CccccchhHHHHHHHHHHHHhc-CCeeE-E-eehHHHHHhHHHHHHHhhhcCCCCEEEEEecCCc--cCCCCCCCCChhh
Q 006251 508 RCFDVGIAEQHAVTFAAGLASE-GVKPF-C-AIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFD 582 (654)
Q Consensus 508 R~id~GIaE~~mvg~AaGlA~~-G~~Pi-~-~tfa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~--~g~dG~tHq~~ed 582 (654)
|++.+ ..|+++..+|.|+|+. |-+|- | .|..+=+..++.-| ..+.+.+.||+++...... .+. | .+|.+..
T Consensus 67 ~~i~~-~~E~~Aa~~A~GyAr~tgg~~~v~~~TsGpG~~N~~~~l-~~A~~~~vPlvvItg~~p~~~~~~-~-~~Q~~d~ 142 (616)
T 2pan_A 67 RHILA-RHVEGASHMAEGYTRATAGNIGVCLGTSGPAGTDMITAL-YSASADSIPILCITGQAPRARLHK-E-DFQAVDI 142 (616)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHHSTTCCEEEEECSTHHHHTSHHHH-HHHHHTTCCEEEEEEECCGGGTTT-T-CTTCCCH
T ss_pred cEEee-CCHHHHHHHHHHHHHhcCCCceEEEeCCCchHHHHHHHH-HHHHhcCCCEEEEecCCcccccCc-c-cccccCH
Confidence 55554 9999999999999997 45544 3 34655444555554 4556779999888633222 232 2 3555666
Q ss_pred HHHHhcCCCCEEEecCCHHHHHHHHHHHHhC----CCCcEEEEecCC
Q 006251 583 VTFMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (654)
Q Consensus 583 la~~r~iPnl~V~~PsD~~E~~~ll~~al~~----~~~P~~ir~~r~ 625 (654)
..+++.+--... ...++.++..+++.|+.. ..+||+|-+|..
T Consensus 143 ~~~~~~~tk~~~-~v~~~~~i~~~l~~A~~~A~~~r~GPV~l~iP~d 188 (616)
T 2pan_A 143 EAIAKPVSKMAV-TVREAALVPRVLQQAFHLMRSGRPGPVLVDLPFD 188 (616)
T ss_dssp HHHHGGGSSEEE-ECCSGGGHHHHHHHHHHHHHSSSCCCEEEEEEHH
T ss_pred HHHHHHHHHhhc-ccCCHHHHHHHHHHHHHHHhcCCCceEEEEcchh
Confidence 678888876544 445677777777766542 368999988874
No 63
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=80.65 E-value=16 Score=40.57 Aligned_cols=155 Identities=15% Similarity=0.097 Sum_probs=84.9
Q ss_pred chhHHHHHHHHHHHHHhhCCcEEEEecCccCCCCh-hhHHHhCCCCccccchhHHHHHHHHHHHHhc-CCeeEEe-ehHH
Q 006251 464 TLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGL-NYFQKRFPDRCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSS 540 (654)
Q Consensus 464 ~~s~~~a~~~aL~~~~~~d~~vvvl~aDlg~s~~l-~~f~~~fp~R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~-tfa~ 540 (654)
+++..+++.+.|.+..- +.++.+..+ ....+ +.|.+ .+.+.+=...-|+++.-+|.|+|+. |...+|. |..+
T Consensus 20 ~~~~a~~lv~~L~~~GV--~~vfg~PG~--~~~~l~~al~~-~~~~~~i~~~~E~~Aa~~A~GyAr~tgkp~v~~~TsGp 94 (565)
T 2nxw_A 20 HMKLAEALLRALKDRGA--QAMFGIPGD--FALPFFKVAEE-TQILPLHTLSHEPAVGFAADAAARYSSTLGVAAVTYGA 94 (565)
T ss_dssp CCBHHHHHHHHHHHTTC--CCEEECCCG--GGHHHHHHHHH-HCSSCEEECSSHHHHHHHHHHHHHHHTSCEEEEECTTH
T ss_pred CcCHHHHHHHHHHHcCC--CEEEECCCc--chHHHHHHHHh-CCCcEEEecCcHHHHHHHHHHHHHHhCCCeEEEECCCC
Confidence 35566666666654332 334443321 11112 44443 2433334459999999999999997 6544444 3544
Q ss_pred HHHhHHHHHHHhhhcCCCCEEEEEecCCc--cCCCCCC-CCC--hh-hHHHHhcCCCCEEEe--cCCH-HHHHHHHHHHH
Q 006251 541 FLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPT-HCG--AF-DVTFMSCLPNMVVMA--PSDE-AELMHMVATAA 611 (654)
Q Consensus 541 Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~--~g~dG~t-Hq~--~e-dla~~r~iPnl~V~~--PsD~-~E~~~ll~~al 611 (654)
=+..++.-| ..+...+.||+++...... .|.+... |+. +. ...+++.+-...... |.+. ..+..+++.|.
T Consensus 95 G~~N~~~gv-~~A~~~~vPll~itg~~~~~~~~~~~~~~~~~q~~d~q~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~ 173 (565)
T 2nxw_A 95 GAFNMVNAV-AGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDTQFQVFKEITVAQARLDDPAKAPAEIARVLGAAR 173 (565)
T ss_dssp HHHTTHHHH-HHHHHTTCCEEEEEEECCTTCC--CCCC-------CHHHHHHTTSCSCEEECCCTTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHH-HHHHhhCCCEEEEeCCCChhhhccCcceeeeccchhhHHHHHHhhheEEEEeCCHHHHHHHHHHHHHHHH
Confidence 344444443 4455689999988643322 3433333 332 33 467888876544433 3332 34555666665
Q ss_pred hCCCCcEEEEecCC
Q 006251 612 VIDDRPSCFRFPRG 625 (654)
Q Consensus 612 ~~~~~P~~ir~~r~ 625 (654)
. ..+||+|-+|+-
T Consensus 174 ~-~~GPV~l~iP~D 186 (565)
T 2nxw_A 174 A-QSRPVYLEIPRN 186 (565)
T ss_dssp H-HTCCEEEEEEGG
T ss_pred h-CCCCEEEECChh
Confidence 4 369999999964
No 64
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=80.10 E-value=12 Score=41.89 Aligned_cols=147 Identities=14% Similarity=0.127 Sum_probs=85.8
Q ss_pred HHHHHHHHHhhCC--cEEEEecCccCCCCh---hhHHHhCCCCccccchhHHHHHHHHHHHHhc-CCeeEEe-ehHHHHH
Q 006251 471 FAESLIKEAETDD--KIVAIHAAMGGGTGL---NYFQKRFPDRCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQ 543 (654)
Q Consensus 471 ~~~aL~~~~~~d~--~vvvl~aDlg~s~~l---~~f~~~fp~R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~-tfa~Fl~ 543 (654)
..+.|.+.+++.. .|+.+. |+..+ +.|.+.-.=|++.+ .-|+++.-+|-|+|.. |...+|. |..+=..
T Consensus 13 ~a~~lv~~L~~~GV~~vFg~P----G~~~~~l~dal~~~~~i~~i~~-~hE~~Aa~aAdGyAr~tG~pgv~~~TsGpG~~ 87 (578)
T 3lq1_A 13 YLAAFIEELVQAGVKEAIISP----GSRSTPLALMMAEHPILKIYVD-VDERSAGFFALGLAKASKRPVVLLCTSGTAAA 87 (578)
T ss_dssp HHHHHHHHHHHTTCCEEEECC----CTTTHHHHHHHHHCSSCEEEEC-SSHHHHHHHHHHHHHHHCCCEEEEECSSHHHH
T ss_pred HHHHHHHHHHHcCCCEEEECC----CCccHHHHHHHHhCCCceEEEe-cCcHHHHHHHHHHHHhhCCCEEEEECCchhhh
Confidence 4455555555442 333332 22222 34433212366665 7999999999999986 7554444 3544334
Q ss_pred hHHHHHHHhhhcCCCCEEEEEecCCc--cCCCCCCCCChhhHHHHhcCCCCEEE--ecCCHH--------HHHHHHHHHH
Q 006251 544 RGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFDVTFMSCLPNMVVM--APSDEA--------ELMHMVATAA 611 (654)
Q Consensus 544 ra~dQI~~~~a~~~lpV~~v~~~~G~--~g~dG~tHq~~edla~~r~iPnl~V~--~PsD~~--------E~~~ll~~al 611 (654)
.++.-| ..+...+.||+++...... .|. | .+|.+....+++.+-..... .|.+.. .+..+++.|.
T Consensus 88 N~~~gi-a~A~~d~vPll~itG~~p~~~~g~-~-~~Qe~d~~~~~~~~tk~~~~v~~~~~~~~~~~~i~~~l~~A~~~A~ 164 (578)
T 3lq1_A 88 NYFPAV-AEANLSQIPLIVLTADRPHELRNV-G-APQAMDQLHLYGSHVKDFTDMALPENSEEMLRYAKWHGSRAVDIAM 164 (578)
T ss_dssp TTHHHH-HHHHHTTCCEEEEEEECCGGGTTS-S-CTTCCCCTTTTGGGSSEEEECCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHH-HHHHhcCCCeEEEeCCCCHHhhcC-C-CCCCcCHhhHHhhheeeEeecCCCCCchHHHHHHHHHHHHHHHHhh
Confidence 444443 4555678999988632221 232 2 36666666777777654433 456633 3566666665
Q ss_pred hCCCCcEEEEecCC
Q 006251 612 VIDDRPSCFRFPRG 625 (654)
Q Consensus 612 ~~~~~P~~ir~~r~ 625 (654)
...++||+|-+|..
T Consensus 165 ~gr~GPV~l~iP~d 178 (578)
T 3lq1_A 165 KTPRGPVHLNFPLR 178 (578)
T ss_dssp SSSCCCEEEEEECC
T ss_pred CCCCCcEEEECccC
Confidence 44589999999974
No 65
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=79.78 E-value=17 Score=40.27 Aligned_cols=121 Identities=13% Similarity=0.085 Sum_probs=74.0
Q ss_pred hhHHHhCCCCccccchhHHHHHHHHHHHHhc-CCeeEEe-ehHHHHHhHHHHHHHhhhcCCCCEEEEEecCCc--cCCCC
Q 006251 499 NYFQKRFPDRCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADG 574 (654)
Q Consensus 499 ~~f~~~fp~R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~-tfa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~--~g~dG 574 (654)
+.|.+.-.=|++.+ .-|+++.-+|-|+|.. |...+|. |+.+=...++.-| ..+...+.||+++...... .|. |
T Consensus 34 dal~~~~~i~~i~~-~~E~~Aa~~A~GyAr~tg~~~v~~~TsGpG~~N~~~gi-~~A~~~~vPvl~itg~~~~~~~~~-~ 110 (549)
T 3eya_A 34 DSLNRMGTIEWMST-RHEEVAAFAAGAEAQLSGELAVCAGSCGPGNLHLINGL-FDCHRNHVPVLAIAAHIPSSEIGS-G 110 (549)
T ss_dssp HHHHHHCSSEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHTTHHHH-HHHHHTTCCEEEEEEESCGGGTTS-C
T ss_pred HHHHhcCCCeEEEe-CChHHHHHHHHHHHHHhCCCEEEEeCCCCcHhhhHHHH-HHHHhhCCCEEEEeCCCchhhcCC-C
Confidence 34443312356654 8999999999999996 6544443 4544334444443 4555689999988633222 232 2
Q ss_pred CCCCChhhHHHHhcCCCCEEEecCCHHHHHH----HHHHHHhCCCCcEEEEecCC
Q 006251 575 PTHCGAFDVTFMSCLPNMVVMAPSDEAELMH----MVATAAVIDDRPSCFRFPRG 625 (654)
Q Consensus 575 ~tHq~~edla~~r~iPnl~V~~PsD~~E~~~----ll~~al~~~~~P~~ir~~r~ 625 (654)
.+|......+++.+-.... ...+++++.. +++.|.. ..+|++|-+|..
T Consensus 111 -~~Q~~d~~~~~~~~tk~~~-~v~~~~~~~~~i~~A~~~A~~-~~GPV~l~iP~d 162 (549)
T 3eya_A 111 -YFQETHPQELFRECSHYCE-LVSSPEQIPQVLAIAMRKAVL-NRGVSVVVLPGD 162 (549)
T ss_dssp -CTTCCCHHHHTSTTCSEEE-ECCSGGGHHHHHHHHHHHHHH-TTSEEEEEEEHH
T ss_pred -CCCccCHHHHHhhhhheEE-EeCCHHHHHHHHHHHHHHHhh-CCCCEEEEeChh
Confidence 3566667778887765433 3444544444 5555544 579999999874
No 66
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=79.50 E-value=27 Score=38.75 Aligned_cols=147 Identities=11% Similarity=0.069 Sum_probs=88.9
Q ss_pred HHHHHHHHHHhhCC--cEEEEecCccCCCCh---hhHHHhCCC-CccccchhHHHHHHHHHHHHhc-CCeeEEe-ehHHH
Q 006251 470 YFAESLIKEAETDD--KIVAIHAAMGGGTGL---NYFQKRFPD-RCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSF 541 (654)
Q Consensus 470 a~~~aL~~~~~~d~--~vvvl~aDlg~s~~l---~~f~~~fp~-R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~-tfa~F 541 (654)
..++.|.+.+++.. .|+.+. |+..+ +.+.+ .++ |++- -.-|+++.-+|-|+|.. |...+|. |..+=
T Consensus 9 ~~a~~lv~~L~~~GV~~vFg~P----G~~~~~l~dal~~-~~~i~~i~-~~hE~~Aa~~AdGyAr~tG~pgv~~~TsGpG 82 (556)
T 3hww_A 9 RWAAVILEALTRHGVRHICIAP----GSRSTLLTLAAAE-NSAFIHHT-HFDERGLGHLALGLAKVSKQPVAVIVTSGTA 82 (556)
T ss_dssp HHHHHHHHHHHTTTCCEEEECC----CTTSHHHHHHHHH-CTTCEEEE-CSCHHHHHHHHHHHHHHHCSCEEEEECSSHH
T ss_pred HHHHHHHHHHHHCCCCEEEEcC----CCCcHHHHHHHhh-CCCceEEE-ecCCcHHHHHHHHHHHhhCCCEEEEECCCcH
Confidence 34566666665543 333332 22222 34433 333 5554 46899999999999996 7554444 35443
Q ss_pred HHhHHHHHHHhhhcCCCCEEEEEecCCc--cCCCCCCCCChhhHHHHhcCCCCEEEe--cCC---HHHHHHHHHHHHhC-
Q 006251 542 LQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFDVTFMSCLPNMVVMA--PSD---EAELMHMVATAAVI- 613 (654)
Q Consensus 542 l~ra~dQI~~~~a~~~lpV~~v~~~~G~--~g~dG~tHq~~edla~~r~iPnl~V~~--PsD---~~E~~~ll~~al~~- 613 (654)
...++.-| ..+...+.||+++...... .|. | .||.+...++++.+-....-. |.+ +.++..+++.|+..
T Consensus 83 ~~N~~~gi-a~A~~d~vPll~itG~~~~~~~g~-~-~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~i~~~i~~A~~~~ 159 (556)
T 3hww_A 83 VANLYPAL-IEAGLTGEKLILLTADRPPELIDC-G-ANQAIRQPGMFASHPTHSISLPRPTQDIPARWLVSTIDHALGTL 159 (556)
T ss_dssp HHTTHHHH-HHHHHHCCCEEEEEEECCGGGSSS-S-CTTCCCCTTTTTTCSSEEEECCCCCTTSCHHHHHHHHHHHHHSC
T ss_pred HHhhhHHH-HHHHHhCCCeEEEeCCCCHHHhcc-C-CCccccHHHHHhhheeEEEecCCCcccccHHHHHHHHHHHHhcC
Confidence 34444443 4455678999988633222 232 2 477777777777776655444 332 45688889988752
Q ss_pred CCCcEEEEecCC
Q 006251 614 DDRPSCFRFPRG 625 (654)
Q Consensus 614 ~~~P~~ir~~r~ 625 (654)
.+|||+|-+|+.
T Consensus 160 r~GPV~i~iP~d 171 (556)
T 3hww_A 160 HAGGVHINCPFA 171 (556)
T ss_dssp CSSCEEEEEECC
T ss_pred CCCCEEEeCCcC
Confidence 358999999974
No 67
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=78.22 E-value=10 Score=42.53 Aligned_cols=116 Identities=13% Similarity=0.069 Sum_probs=74.0
Q ss_pred CCccccchhHHHHHHHHHHHHhc-CCeeEEe-ehHHHHHhHHHHHHHhhhcCCCCEEEEEecCCc--cCCCCCCCCChhh
Q 006251 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFD 582 (654)
Q Consensus 507 ~R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~-tfa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~--~g~dG~tHq~~ed 582 (654)
=|++.+ .-|+++.-+|-|+|.. |...+|. |..+=...++.-| .++-..+.||+++...... .|.+ .+|.+..
T Consensus 70 i~~i~~-~hE~~Aa~aA~GyAr~tgkpgv~~~TsGpG~~N~~~gi-a~A~~~~vPlv~ItG~~~~~~~g~~--~~Q~~d~ 145 (604)
T 2x7j_A 70 ISVHVQ-IDERSAGFFALGLAKAKQRPVLLICTSGTAAANFYPAV-VEAHYSRVPIIVLTADRPHELREVG--APQAINQ 145 (604)
T ss_dssp CEEEEC-SSHHHHHHHHHHHHHHHTSCEEEEECSSHHHHTTHHHH-HHHHHHTCCEEEEEEECCGGGSSSC--CTTCCCC
T ss_pred ceEEEe-cChHHHHHHHHHHHHhhCCCEEEEECChhHHHHHHHHH-HHHhhcCCCEEEEeCCCCHHHhCCC--CCCcCcH
Confidence 366665 9999999999999997 6543443 4554344444443 4455678999988633222 2322 3666666
Q ss_pred HHHHhcCCCCEEEe--cCC--------HHHHHHHHHHHHhCCCCcEEEEecCCC
Q 006251 583 VTFMSCLPNMVVMA--PSD--------EAELMHMVATAAVIDDRPSCFRFPRGN 626 (654)
Q Consensus 583 la~~r~iPnl~V~~--PsD--------~~E~~~ll~~al~~~~~P~~ir~~r~~ 626 (654)
..+++.+-...... |.+ +..+..+++.|.....+||+|-+|...
T Consensus 146 ~~~~~~~tk~~~~v~~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d~ 199 (604)
T 2x7j_A 146 HFLFGNFVKFFTDSALPEESPQMLRYIRTLASRAAGEAQKRPMGPVHVNVPLRE 199 (604)
T ss_dssp TTTTGGGSSCEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEECCS
T ss_pred HHHhhhheeeeeecCCCcccchhHHHHHHHHHHHHHHhhCCCCCcEEEEcccCc
Confidence 67777776654443 444 345666666665436799999999753
No 68
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=77.95 E-value=4.8 Score=42.82 Aligned_cols=101 Identities=16% Similarity=0.126 Sum_probs=60.1
Q ss_pred HHHHHHHHhc------CCeeEEee-hHHHHHh-HHHHHHHhhhcCCCCEEEEEecCCccCCCCCCC-----CChhhHHHH
Q 006251 520 VTFAAGLASE------GVKPFCAI-YSSFLQR-GYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTH-----CGAFDVTFM 586 (654)
Q Consensus 520 vg~AaGlA~~------G~~Pi~~t-fa~Fl~r-a~dQI~~~~a~~~lpV~~v~~~~G~~g~dG~tH-----q~~edla~~ 586 (654)
+..|.|+|+. +..+++.+ -..|.+- .++. ++.++..++||++++...++ |-.++++ ....+++-.
T Consensus 148 lp~AvG~A~A~~~~~~~~~vv~i~GDGa~~~G~~~Ea-l~~A~~~~lpvi~vv~NN~~-gi~~~~~~~~~~~d~~~~a~a 225 (368)
T 1w85_A 148 YIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEG-INFAGAFKAPAIFVVQNNRF-AISTPVEKQTVAKTLAQKAVA 225 (368)
T ss_dssp HHHHHHHHHHHHHTTCSCCEEEEEETGGGGSHHHHHH-HHHHHHTTCCEEEEEEECSE-ETTEEGGGTCSCSCSGGGGGG
T ss_pred ccHHHHHHHHhHhhCCCCeEEEEEchhhhhhcHHHHH-HHHHHHHCcCEEEEEEcCCc-cceeccccccCCCCHHHHHHH
Confidence 3445555553 34555554 5667643 3343 57788899999999876654 2222221 113333333
Q ss_pred hcCCCCEEEecCCHHHHHHHHHHHHh---CCCCcEEEEec
Q 006251 587 SCLPNMVVMAPSDEAELMHMVATAAV---IDDRPSCFRFP 623 (654)
Q Consensus 587 r~iPnl~V~~PsD~~E~~~ll~~al~---~~~~P~~ir~~ 623 (654)
-.+|++.| .=-|+.++..+++.|++ ..++|++|-..
T Consensus 226 ~G~~~~~V-dG~D~~av~~a~~~A~~~~r~~~gP~lIe~~ 264 (368)
T 1w85_A 226 AGIPGIQV-DGMDPLAVYAAVKAARERAINGEGPTLIETL 264 (368)
T ss_dssp TTCCEEEE-ETTCHHHHHHHHHHHHHHHHTTSCCEEEEEE
T ss_pred CCCCEEEE-cCCCHHHHHHHHHHHHHHHHhcCCCEEEEEE
Confidence 45666554 33478999999998875 35799998653
No 69
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=77.48 E-value=13 Score=41.30 Aligned_cols=152 Identities=14% Similarity=0.070 Sum_probs=86.9
Q ss_pred hhHHHHHHHHHHHHHhhCCcEEEEecCccCCCCh-hhHHHhCCCCccccchhHHHHHHHHHHHHhc-CCeeEEe-ehHHH
Q 006251 465 LTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGL-NYFQKRFPDRCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSF 541 (654)
Q Consensus 465 ~s~~~a~~~aL~~~~~~d~~vvvl~aDlg~s~~l-~~f~~~fp~R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~-tfa~F 541 (654)
++..+++.+.|.+.. -+.++.+..+ ....+ +.+.+ ..=|++.+ ..|+++.-+|-|+|.. |...+|. |..+=
T Consensus 10 ~~~a~~l~~~L~~~G--V~~vfg~PG~--~~~~l~~al~~-~~i~~i~~-~~E~~Aa~~A~GyAr~tg~pgv~~~TsGpG 83 (568)
T 2c31_A 10 TDGFHVLIDALKMND--IDTMYGVVGI--PITNLARMWQD-DGQRFYSF-RHEQHAGYAASIAGYIEGKPGVCLTVSAPG 83 (568)
T ss_dssp EEHHHHHHHHHHHTT--CCEEEECCCT--TTHHHHHHHHH-TTCEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEECSHHH
T ss_pred ccHHHHHHHHHHHcC--CCEEEEeCCC--ccHHHHHHHHh-CCCcEEEe-CcHHHHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 445555555554432 1334444322 11112 33433 23466665 9999999999999997 6544443 35544
Q ss_pred HHhHHHHHHHhhhcCCCCEEEEEecCCc--cCC-CCCCCCChhhHHHHhcCCCCEEEecCCHHHH----HHHHHHHHhCC
Q 006251 542 LQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGA-DGPTHCGAFDVTFMSCLPNMVVMAPSDEAEL----MHMVATAAVID 614 (654)
Q Consensus 542 l~ra~dQI~~~~a~~~lpV~~v~~~~G~--~g~-dG~tHq~~edla~~r~iPnl~V~~PsD~~E~----~~ll~~al~~~ 614 (654)
+..++.-| ..+...+.||+++...... .+. .| .+|.+....+++.+-...... .++.++ ..+++.|....
T Consensus 84 ~~N~~~~i-~~A~~~~vPll~itg~~~~~~~~~~~~-~~Q~~dq~~~~~~~tk~~~~v-~~~~~~~~~i~~A~~~A~~~~ 160 (568)
T 2c31_A 84 FLNGVTSL-AHATTNCFPMILLSGSSEREIVDLQQG-DYEEMDQMNVARPHCKASFRI-NSIKDIPIGIARAVRTAVSGR 160 (568)
T ss_dssp HHHHHHHH-HHHHHHTCCEEEEEEECCHHHHHTTCC-CTTCCCHHHHSGGGSSEEEEC-CSGGGHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHH-HHHHhcCCCEEEEccCCCccccCCCCC-cccccCHHHHHHhhhheeeec-CCHHHHHHHHHHHHHHhcCCC
Confidence 44444443 4455678999988633222 231 12 466666677888876654433 444444 44555554336
Q ss_pred CCcEEEEecCC
Q 006251 615 DRPSCFRFPRG 625 (654)
Q Consensus 615 ~~P~~ir~~r~ 625 (654)
.+||+|-+|..
T Consensus 161 ~GPV~l~iP~d 171 (568)
T 2c31_A 161 PGGVYVDLPAK 171 (568)
T ss_dssp CCEEEEEEETH
T ss_pred CceEEEeCCHH
Confidence 79999999876
No 70
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=75.71 E-value=9.5 Score=42.01 Aligned_cols=115 Identities=14% Similarity=0.165 Sum_probs=71.1
Q ss_pred CccccchhHHHHHHHHHHHHhc-CCeeEEee-hHHHHHhHHHHHHHhhhcCCCCEEEEEecCCc--cCCCCCCCCChhhH
Q 006251 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFDV 583 (654)
Q Consensus 508 R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~t-fa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~--~g~dG~tHq~~edl 583 (654)
|++.+ ..|++++.+|.|+|+. |...+|.+ ..+=+..++.-| ..+...+.||+++...... .+.+..+|. +...
T Consensus 40 ~~i~~-~~E~~Aa~~A~Gyar~tg~~~v~~~tsGpG~~N~~~~l-~~A~~~~~Pll~itg~~~~~~~~~~~~q~~-~d~~ 116 (528)
T 1q6z_A 40 RYILA-LQEACVVGIADGYAQASRKPAFINLHSAAGTGNAMGAL-SNAWNSHSPLIVTAGQQTRAMIGVEALLTN-VDAA 116 (528)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHHHTSCEEEEEEHHHHHHHTHHHH-HHHHHTTCCEEEEEEECCHHHHTTTCTTCC-TTGG
T ss_pred cEEEE-CcHHHHHHHHHHHHHHhCCCEEEEEcCChHHHHHHHHH-HHHhhcCCCEEEEeCCCcccccCCCccccc-ccHH
Confidence 55544 8999999999999997 76655544 433334455554 3456679999988633222 243333331 3555
Q ss_pred HHHhcCCCCEEEecCCHHH----HHHHHHHHHhCCCCcEEEEecCCC
Q 006251 584 TFMSCLPNMVVMAPSDEAE----LMHMVATAAVIDDRPSCFRFPRGN 626 (654)
Q Consensus 584 a~~r~iPnl~V~~PsD~~E----~~~ll~~al~~~~~P~~ir~~r~~ 626 (654)
.+++.+..... .+.++.+ +..+++.|.....+|++|-+|...
T Consensus 117 ~~~~~~~k~~~-~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d~ 162 (528)
T 1q6z_A 117 NLPRPLVKWSY-EPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDD 162 (528)
T ss_dssp GSSTTSCSCEE-CCSSGGGHHHHHHHHHHHHHSSSCCCEEEEEEGGG
T ss_pred HHHHHhhHhhh-cCCCHHHHHHHHHHHHHHHhcCCCCcEEEEechhh
Confidence 67777765443 3344444 444555565455689999998864
No 71
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=75.40 E-value=27 Score=38.65 Aligned_cols=115 Identities=11% Similarity=0.076 Sum_probs=73.1
Q ss_pred CCccccchhHHHHHHHHHHHHhc-CCeeEEe-ehHHHHHhHHHHHHHhhhcCCCCEEEEEecCCc--cCC-CCCCCCChh
Q 006251 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGA-DGPTHCGAF 581 (654)
Q Consensus 507 ~R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~-tfa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~--~g~-dG~tHq~~e 581 (654)
=|++.+ ..|+++.-+|-|+|.. |...+|. |..+=+..++.-| ..+...+.||+++...... .+. .| .+|.+.
T Consensus 46 i~~i~~-~hE~~Aa~~A~Gyar~tg~pgv~~~TsGpG~~N~~~gi-~~A~~~~vPll~itg~~~~~~~~~~~~-~~Q~~d 122 (564)
T 2q28_A 46 IRYIGF-RHEQSAGYAAAASGFLTQKPGICLTVSAPGFLNGLTAL-ANATVNGFPMIMISGSSDRAIVDLQQG-DYEELD 122 (564)
T ss_dssp CEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEECSHHHHHHHHHHH-HHHHHHTCCEEEEEEECCHHHHHTTSC-CTTCCC
T ss_pred CcEEee-CCHHHHHHHHHHHHHHhCCCEEEEEccCchHHHHHHHH-HHHHhcCCCEEEEeCCCCccccCCCCC-cccccc
Confidence 466665 9999999999999997 6543443 4555444444443 4455678999988633222 121 12 466667
Q ss_pred hHHHHhcCCCCEEEecCCHHH----HHHHHHHHHhCCCCcEEEEecCC
Q 006251 582 DVTFMSCLPNMVVMAPSDEAE----LMHMVATAAVIDDRPSCFRFPRG 625 (654)
Q Consensus 582 dla~~r~iPnl~V~~PsD~~E----~~~ll~~al~~~~~P~~ir~~r~ 625 (654)
...+++.+-...... .++.+ +..+++.|.....+||+|-+|..
T Consensus 123 q~~~~~~~tk~~~~v-~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 169 (564)
T 2q28_A 123 QMNAAKPYAKAAFRV-NQPQDLGIALARAIRVSVSGRPGGVYLDLPAN 169 (564)
T ss_dssp HHHHHGGGSSEEEEC-CSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred HHHHHHHhhheeeec-CCHHHHHHHHHHHHHHHhcCCCceEEEEcCHH
Confidence 778888887655443 34434 44455555433679999999876
No 72
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=74.99 E-value=5.4 Score=42.88 Aligned_cols=102 Identities=12% Similarity=0.065 Sum_probs=59.4
Q ss_pred HHHHHHHhc------CCeeEEee-hHHHHHhHHHHHHHhhhcCCCCEEEEEecCCccCCCCCCC--CChhhHHHHhcCCC
Q 006251 521 TFAAGLASE------GVKPFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTH--CGAFDVTFMSCLPN 591 (654)
Q Consensus 521 g~AaGlA~~------G~~Pi~~t-fa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~~g~dG~tH--q~~edla~~r~iPn 591 (654)
..|.|+|+. +.+++|.+ -..|.+-.+-+-++.++..++||++++...++ +-.+++. ....|++-...--|
T Consensus 169 p~AvG~AlA~~~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~-~i~~~~~~~~~~~d~~~~a~a~G 247 (400)
T 2bfd_A 169 PQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGY-AISTPTSEQYRGDGIAARGPGYG 247 (400)
T ss_dssp HHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEEEEECSE-ETTEEGGGTCSSSTTGGGTGGGT
T ss_pred cHHHHHHHhhhhhCCCCeEEEEECchhhhcChHHHHHHHHHHHCcCEEEEEECCce-eeeecccccCCCCCHHHHHHHcC
Confidence 455666653 44555555 66675433233357778889999999876664 2223322 12234332222235
Q ss_pred CEEEe--cCCHHHHHHHHHHHHh---CCCCcEEEEec
Q 006251 592 MVVMA--PSDEAELMHMVATAAV---IDDRPSCFRFP 623 (654)
Q Consensus 592 l~V~~--PsD~~E~~~ll~~al~---~~~~P~~ir~~ 623 (654)
+.++. =-|..++..+++.|++ ..++|++|-..
T Consensus 248 ~~~~~VdG~D~~av~~a~~~A~~~ar~~~~P~lIe~~ 284 (400)
T 2bfd_A 248 IMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAM 284 (400)
T ss_dssp CEEEEEETTCHHHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred CcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 55443 3478888888888865 25789988653
No 73
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=74.65 E-value=32 Score=38.54 Aligned_cols=123 Identities=12% Similarity=0.044 Sum_probs=74.3
Q ss_pred hhHHHhCC-CCccccchhHHHHHHHHHHHHhc-CCeeEEe-ehHHHHHhHHHHHHHhhhcCCCCEEEEEecCCc--cCCC
Q 006251 499 NYFQKRFP-DRCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGAD 573 (654)
Q Consensus 499 ~~f~~~fp-~R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~-tfa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~--~g~d 573 (654)
+.|.+..+ =|++.+ .-|+++.-+|.|+|.. |...+|. |+.+=...++.-| .++...+.||+++...... .+.
T Consensus 42 dal~~~~~~i~~i~~-~hE~~Aa~aA~GyAr~tg~~gv~~~TsGpG~~N~~~gi-a~A~~~~vPvl~itG~~~~~~~~~- 118 (603)
T 4feg_A 42 DALSAERDRIHYIQV-RHEEVGAMAAAADAKLTGKIGVCFGSAGPGGTHLMNGL-YDAREDHVPVLALIGQFGTTGMNM- 118 (603)
T ss_dssp HHHHHTTTTSEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHTTHHHH-HHHHHTTCCEEEEEEECCTTTTTS-
T ss_pred HHHHhccCCCeEEEe-cChHHHHHHHHHHHHHhCCceEEEecCCchHHHHHHHH-HHHHHcCCCEEEEecCCcccccCC-
Confidence 44444322 366655 8999999999999986 6554444 4554344444443 4556679999988632221 232
Q ss_pred CCCCCChhhHHHHhcCCCCEEE--ecCC-HHHHHHHHHHHHhCCCCcEEEEecCCC
Q 006251 574 GPTHCGAFDVTFMSCLPNMVVM--APSD-EAELMHMVATAAVIDDRPSCFRFPRGN 626 (654)
Q Consensus 574 G~tHq~~edla~~r~iPnl~V~--~PsD-~~E~~~ll~~al~~~~~P~~ir~~r~~ 626 (654)
..+|.+....+++.+--.... .|.+ +..+..+++.|.. ..+|++|-+|+..
T Consensus 119 -~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~-~~GPV~l~iP~dv 172 (603)
T 4feg_A 119 -DTFQEMNENPIYADVADYNVTAVNAATLPHVIDEAIRRAYA-HQGVAVVQIPVDL 172 (603)
T ss_dssp -CCTTCCCCGGGGTTTCSEEEECCCSTTHHHHHHHHHHHHHH-HTSEEEEEEETTG
T ss_pred -CccccccHHHHhhhhceEEEEcCCHHHHHHHHHHHHHHHhc-CCCCEEEEeChhh
Confidence 235555556677777654333 3333 2334456666654 5799999999853
No 74
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=74.64 E-value=12 Score=42.95 Aligned_cols=91 Identities=12% Similarity=0.088 Sum_probs=58.1
Q ss_pred CeeEEee-hHHHHH-hHHHHHHHhhhcCCCC-EEEEEecCCccCCCCCCCCC-hhhHH-HHhcCCCCEEE-ec---CCHH
Q 006251 531 VKPFCAI-YSSFLQ-RGYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHCG-AFDVT-FMSCLPNMVVM-AP---SDEA 601 (654)
Q Consensus 531 ~~Pi~~t-fa~Fl~-ra~dQI~~~~a~~~lp-V~~v~~~~G~~g~dG~tHq~-~edla-~~r~iPnl~V~-~P---sD~~ 601 (654)
.+.+|-+ -..+.. ..++. ++.++..++| ++++.+..++ +-+|++... .+|+. .+++ -|+.++ .- -|..
T Consensus 149 ~~v~~~~GDG~~~eG~~~Ea-l~~A~~~~L~~li~i~d~N~~-~i~~~~~~~~~~d~~~~~~a-~G~~~~~~vdG~~d~~ 225 (673)
T 1r9j_A 149 HYTYVYCGDGCLMEGVCQEA-LSLAGHLALEKLIVIYDSNYI-SIDGSTSLSFTEQCHQKYVA-MGFHVIEVKNGDTDYE 225 (673)
T ss_dssp CCEEEEECHHHHHSHHHHHH-HHHHHHHTCTTEEEEEEECSB-CSSSBGGGTCCCCHHHHHHH-TTCEEEEESCTTTCHH
T ss_pred CEEEEEECcchhcccHHHHH-HHHHHHhCCCcEEEEEECCCC-ccccchhhccCHhHHHHHHH-CCCeEEEEeCCCCCHH
Confidence 3445544 566653 34555 4667778887 8888877764 234443321 34544 3444 489988 33 5788
Q ss_pred HHHHHHHHHHhCCCCcEEEEecC
Q 006251 602 ELMHMVATAAVIDDRPSCFRFPR 624 (654)
Q Consensus 602 E~~~ll~~al~~~~~P~~ir~~r 624 (654)
++..+++.|.+..++|++|...-
T Consensus 226 ~l~~Al~~A~~~~~~P~lI~~~T 248 (673)
T 1r9j_A 226 GLRKALAEAKATKGKPKMIVQTT 248 (673)
T ss_dssp HHHHHHHHHHHCCSSCEEEEEEC
T ss_pred HHHHHHHHHHHcCCCCEEEEEec
Confidence 99999988865578999987653
No 75
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=74.32 E-value=31 Score=38.25 Aligned_cols=115 Identities=17% Similarity=0.132 Sum_probs=70.2
Q ss_pred CCccccchhHHHHHHHHHHHHhc-CCeeEEe-ehHHHHHhHHHHHHHhhhcCCCCEEEEEecCCc--cCCCCCCCCC---
Q 006251 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCG--- 579 (654)
Q Consensus 507 ~R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~-tfa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~--~g~dG~tHq~--- 579 (654)
=|++.+ ..|+++..+|.|+|+. | ..+|. |..+=...++.-| .++...+.||+++...... .+.+...||.
T Consensus 42 i~~i~~-~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N~~~gi-a~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~ 118 (568)
T 2wvg_A 42 MEQVYC-CNELNCGFSAEGYARAKG-AAAAVVTYSVGALSAFDAI-GGAYAENLPVILISGAPNNNDHAAGHVLHHALGK 118 (568)
T ss_dssp SEEEEC-SSHHHHHHHHHHHHHHHS-CEEEEECTTTTHHHHHHHH-HHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSS
T ss_pred ceEecc-CcHHHHHHHHHHHHHhhC-CeEEEEeCCCCHHHHHHHH-HHHhhhCCCEEEEeCCCChhHhccCcceeeeccc
Confidence 356665 9999999999999986 8 44433 3544333444443 3456678999988643332 2333233442
Q ss_pred ---hhhHHHHhcCCCCEEEecCCHHHH----HHHHHHHHhCCCCcEEEEecCCC
Q 006251 580 ---AFDVTFMSCLPNMVVMAPSDEAEL----MHMVATAAVIDDRPSCFRFPRGN 626 (654)
Q Consensus 580 ---~edla~~r~iPnl~V~~PsD~~E~----~~ll~~al~~~~~P~~ir~~r~~ 626 (654)
.....+++.+--.. +...++.++ ..+++.|... .+||+|-+|...
T Consensus 119 ~~~~d~~~~~~~~tk~~-~~v~~~~~~~~~l~~A~~~A~~~-~GPV~l~iP~dv 170 (568)
T 2wvg_A 119 TDYHYQLEMAKNITAAA-EAIYTPEEAPAKIDHVIKTALRE-KKPVYLEIACNI 170 (568)
T ss_dssp SCCCHHHHHHTTSCSCE-EEECSGGGHHHHHHHHHHHHHHH-TCCEEEEEEGGG
T ss_pred cchHHHHHHHHhhEeEE-EEeCCHHHHHHHHHHHHHHHHhC-CCCEEEEechhH
Confidence 13467888887654 333444444 4455556543 499999998764
No 76
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=74.09 E-value=9.1 Score=43.99 Aligned_cols=91 Identities=16% Similarity=0.157 Sum_probs=57.2
Q ss_pred CeeEEee-hHHHHH-hHHHHHHHhhhcCCCC-EEEEEecCCccCCCCCCC-CChhhHH-HHhcCCCCEEEecC----CHH
Q 006251 531 VKPFCAI-YSSFLQ-RGYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTH-CGAFDVT-FMSCLPNMVVMAPS----DEA 601 (654)
Q Consensus 531 ~~Pi~~t-fa~Fl~-ra~dQI~~~~a~~~lp-V~~v~~~~G~~g~dG~tH-q~~edla-~~r~iPnl~V~~Ps----D~~ 601 (654)
.+.+|-+ -..|.. ..++. ++.++..++| ++++....++. -++++. +..+|+. .++++ |+.++.+. |..
T Consensus 149 ~~vv~i~GDG~~~eG~~~Ea-l~~A~~~~L~~li~i~~nN~~~-i~~~~~~~~~~d~~~~~~a~-G~~~~~~vdG~~d~~ 225 (680)
T 1gpu_A 149 NYTYVFLGDGCLQEGISSEA-SSLAGHLKLGNLIAIYDDNKIT-IDGATSISFDEDVAKRYEAY-GWEVLYVENGNEDLA 225 (680)
T ss_dssp CCEEEEECHHHHHSHHHHHH-HHHHHHTTCTTEEEEEEECSEE-TTEEGGGTCCCCHHHHHHHH-TCEEEEESCTTTCHH
T ss_pred CeEEEEECCCccchhhHHHH-HHHHHHhCCCcEEEEEECCCce-EecccccccCccHHHHHHhc-CCeEEEEecCCCCHH
Confidence 3445554 566653 44555 4667788987 88888776642 234333 2234443 33444 88888454 678
Q ss_pred HHHHHHHHHHhCCCCcEEEEecC
Q 006251 602 ELMHMVATAAVIDDRPSCFRFPR 624 (654)
Q Consensus 602 E~~~ll~~al~~~~~P~~ir~~r 624 (654)
++..+++.|.+..++|++|...-
T Consensus 226 ~l~~al~~A~~~~~~P~lI~~~T 248 (680)
T 1gpu_A 226 GIAKAIAQAKLSKDKPTLIKMTT 248 (680)
T ss_dssp HHHHHHHHHHHCTTSCEEEEEEC
T ss_pred HHHHHHHHHHHCCCCCEEEEEEe
Confidence 88889988865468999887643
No 77
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=73.99 E-value=11 Score=43.33 Aligned_cols=115 Identities=13% Similarity=0.109 Sum_probs=70.8
Q ss_pred CCccccchhHHHHHHHHHHHHhc----------------CCeeEEee-hHHHHH-hHHHHHHHhhhcCCCC-EEEEEecC
Q 006251 507 DRCFDVGIAEQHAVTFAAGLASE----------------GVKPFCAI-YSSFLQ-RGYDQVVHDVDLQKLP-VRFAMDRA 567 (654)
Q Consensus 507 ~R~id~GIaE~~mvg~AaGlA~~----------------G~~Pi~~t-fa~Fl~-ra~dQI~~~~a~~~lp-V~~v~~~~ 567 (654)
+-.+.+|..=++ ++.|.|+|+. ..+.+|-+ -..|.. .+++. ++.++..++| ++++.+..
T Consensus 134 gv~~~tG~lG~g-l~~AvG~AlA~~~~~~~~n~~~~~~~d~~v~~i~GDG~l~eG~~~Ea-l~~A~~~~L~~livI~dnN 211 (690)
T 3m49_A 134 GVDATTGPLGQG-IATAVGMAMAERHLAAKYNRDAYNIVDHYTYAICGDGDLMEGVSAEA-SSLAAHLQLGRLVVLYDSN 211 (690)
T ss_dssp TCCSCCCSTTHH-HHHHHHHHHHHHHHHHHHCBTTBCCSCCCEEEEECHHHHHSHHHHHH-HHHHHHTTCTTEEEEEEEC
T ss_pred ccccCCcccccc-HHHHHHHHHHHHHhhccccccccccCCCeEEEEECchhhhhccHHHH-HHHHHHhCCCeEEEEEECC
Confidence 333444444333 4566666663 34455555 666653 44555 4667788887 77777766
Q ss_pred CccCCCCCCCC-ChhhHH-HHhcCCCCEEEec---CCHHHHHHHHHHHHhCCCCcEEEEecCC
Q 006251 568 GLVGADGPTHC-GAFDVT-FMSCLPNMVVMAP---SDEAELMHMVATAAVIDDRPSCFRFPRG 625 (654)
Q Consensus 568 G~~g~dG~tHq-~~edla-~~r~iPnl~V~~P---sD~~E~~~ll~~al~~~~~P~~ir~~r~ 625 (654)
++ +-+|+++. ..+|+. .++++ |+.++.+ .|..++..+++.+....++|++|.....
T Consensus 212 ~~-~i~~~~~~~~~~d~~~~~~a~-G~~~~~v~DG~d~~~l~~Al~~a~~~~~~P~lI~v~T~ 272 (690)
T 3m49_A 212 DI-SLDGDLNRSFSESVEDRYKAY-GWQVIRVEDGNDIEAIAKAIEEAKADEKRPTLIEVRTT 272 (690)
T ss_dssp SB-CSSSBGGGTCCCCHHHHHHHH-TCEEEEESCTTCHHHHHHHHHHHHHCCSSCEEEEEECC
T ss_pred Ce-ecccchhhccchhHHHHHHHc-CCcEEEEecCCCHHHHHHHHHHHHhcCCCCEEEEEEee
Confidence 64 33455432 233433 34444 8999998 6889999999988643689999876543
No 78
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=73.61 E-value=28 Score=38.55 Aligned_cols=114 Identities=14% Similarity=0.158 Sum_probs=69.5
Q ss_pred CccccchhHHHHHHHHHHHHhc-CCeeEEee-hHHHHHhHHHHHHHhhhcCCCCEEEEEecCCc--cCCCCCCCCC----
Q 006251 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCG---- 579 (654)
Q Consensus 508 R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~t-fa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~--~g~dG~tHq~---- 579 (654)
|++.+ ..|++++.+|.|+|+. | ..+|.+ ..+=+..++.-| .++...+.||+++...... .+.+...||.
T Consensus 43 ~~v~~-~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N~~~gi-a~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~ 119 (566)
T 2vbi_A 43 KQIYC-CNELNCGFSAEGYARSNG-AAAAVVTFSVGAISAMNAL-GGAYAENLPVILISGAPNSNDQGTGHILHHTIGKT 119 (566)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHHHS-CEEEEECTTTTHHHHHHHH-HHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSS
T ss_pred eEEee-CcHHHHHHHHHHHHhhcC-CeEEEEeCCCCHHHHHHHH-HHHHhhCCCEEEEECCCChHHhccCceeeeeccCc
Confidence 55554 8999999999999986 8 554443 544333344443 3455678999988643332 2332223442
Q ss_pred --hhhHHHHhcCCCCEEEecCCHH----HHHHHHHHHHhCCCCcEEEEecCCC
Q 006251 580 --AFDVTFMSCLPNMVVMAPSDEA----ELMHMVATAAVIDDRPSCFRFPRGN 626 (654)
Q Consensus 580 --~edla~~r~iPnl~V~~PsD~~----E~~~ll~~al~~~~~P~~ir~~r~~ 626 (654)
.....+++.+--.. +.+.++. .+..+++.|... .+|++|-+|...
T Consensus 120 ~~~d~~~~~~~~tk~~-~~v~~~~~~~~~l~~A~~~a~~~-~GPV~l~iP~d~ 170 (566)
T 2vbi_A 120 DYSYQLEMARQVTCAA-ESITDAHSAPAKIDHVIRTALRE-RKPAYLDIACNI 170 (566)
T ss_dssp CCTHHHHHHHTTCSEE-EEECSSSSHHHHHHHHHHHHHHH-TCCEEEEEETTT
T ss_pred chHHHHHHHhhhEeEE-EEeCCHHHHHHHHHHHHHHHHhC-CCCEEEEechhh
Confidence 13467888886543 3333333 345566666543 499999999864
No 79
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=73.20 E-value=36 Score=37.60 Aligned_cols=114 Identities=16% Similarity=0.118 Sum_probs=70.1
Q ss_pred CccccchhHHHHHHHHHHHHhc-CCeeEEe-ehHHHHHhHHHHHHHhhhcCCCCEEEEEecCCc--cCCCCCCCCCh---
Q 006251 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGA--- 580 (654)
Q Consensus 508 R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~-tfa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~--~g~dG~tHq~~--- 580 (654)
|++.+ .-|+++.-+|.|+|.. | .++|. |..+=...++.-| .++...+.||+++...... .+.+-..||..
T Consensus 44 ~~v~~-~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N~~~gi-a~A~~~~~Pll~itg~~~~~~~~~~~~~~~~~g~~ 120 (563)
T 2vk8_A 44 RWAGN-ANELNAAYAADGYARIKG-MSCIITTFGVGELSALNGI-AGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNG 120 (563)
T ss_dssp EECCC-SSHHHHHHHHHHHHHHHS-CEEEEEETTHHHHHHHHHH-HHHHHHTCCEEEEEEECCHHHHHTTCCCTTSCSSS
T ss_pred eEEcc-CchHHHHHHHHHHHHhhC-CcEEEEcCCCcHHHHHHHH-HHHHhhCCCEEEEECCCChHHhhcccccccccCCc
Confidence 56554 8999999999999996 7 55444 3544333344433 3445578999988643222 12222333221
Q ss_pred ---hhHHHHhcCCCCEEEecCC----HHHHHHHHHHHHhCCCCcEEEEecCCC
Q 006251 581 ---FDVTFMSCLPNMVVMAPSD----EAELMHMVATAAVIDDRPSCFRFPRGN 626 (654)
Q Consensus 581 ---edla~~r~iPnl~V~~PsD----~~E~~~ll~~al~~~~~P~~ir~~r~~ 626 (654)
+...+++.+--.... ..+ +..+..+++.|... .+||+|-+|...
T Consensus 121 ~~q~~~~~~~~~~k~~~~-v~~~~~~~~~i~~A~~~A~~~-~GPV~l~iP~d~ 171 (563)
T 2vk8_A 121 DFTVFHRMSANISETTAM-ITDIATAPAEIDRCIRTTYVT-QRPVYLGLPANL 171 (563)
T ss_dssp CSSHHHHHHHTTCSEEEE-CCCTTTHHHHHHHHHHHHHHH-TSCEEEEEETTG
T ss_pred chHHHHHHhhhhEEEEEE-eCCHHHHHHHHHHHHHHHHhC-CCCEEEEechhh
Confidence 235678887754433 334 45566677777644 599999999864
No 80
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=72.32 E-value=11 Score=43.22 Aligned_cols=91 Identities=16% Similarity=0.163 Sum_probs=57.8
Q ss_pred CeeEEee-hHHHHH-hHHHHHHHhhhcCCCC-EEEEEecCCccCCCCCCC-CChhhHH-HHhcCCCCEEEecC---CHHH
Q 006251 531 VKPFCAI-YSSFLQ-RGYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTH-CGAFDVT-FMSCLPNMVVMAPS---DEAE 602 (654)
Q Consensus 531 ~~Pi~~t-fa~Fl~-ra~dQI~~~~a~~~lp-V~~v~~~~G~~g~dG~tH-q~~edla-~~r~iPnl~V~~Ps---D~~E 602 (654)
.+.+|-+ -..|.. .+++. ++.++..++| ++++....++. -+|++. +..+|+. .++.+ |+.++.+. |..+
T Consensus 147 ~~v~~~~GDG~~~eG~~~Ea-l~~A~~~~L~~li~i~~nN~~~-i~~~~~~~~~~d~~~~~~a~-G~~~~~~vdG~d~~~ 223 (669)
T 2r8o_A 147 HYTYAFMGDGCMMEGISHEV-CSLAGTLKLGKLIAFYDDNGIS-IDGHVEGWFTDDTAMRFEAY-GWHVIRDIDGHDAAS 223 (669)
T ss_dssp CCEEEEECHHHHHSHHHHHH-HHHHHHTTCTTEEEEEEECSEE-TTEEGGGTCCCCHHHHHHHT-TCEEEEEEETTCHHH
T ss_pred CeEEEEECHhHhcchHHHHH-HHHHHHcCCCcEEEEEECCCcE-eccccccccCccHHHHHHHC-CCeEEeEECCCCHHH
Confidence 3555555 566653 45555 4667788988 88888776642 234433 2234544 34444 88887343 6889
Q ss_pred HHHHHHHHHhCCCCcEEEEecC
Q 006251 603 LMHMVATAAVIDDRPSCFRFPR 624 (654)
Q Consensus 603 ~~~ll~~al~~~~~P~~ir~~r 624 (654)
+..+++.+.+..++|++|...-
T Consensus 224 l~~al~~a~~~~~~P~lI~~~T 245 (669)
T 2r8o_A 224 IKRAVEEARAVTDKPSLLMCKT 245 (669)
T ss_dssp HHHHHHHHHHCCSSCEEEEEEC
T ss_pred HHHHHHHHHhcCCCCEEEEEEe
Confidence 9999998865468999886543
No 81
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=70.19 E-value=11 Score=43.57 Aligned_cols=90 Identities=16% Similarity=0.131 Sum_probs=57.9
Q ss_pred CeeEEee-hHHHHH-hHHHHHHHhhhcCCCC-EEEEEecCCccCCCCCCCC-ChhhHH-HHhcCCCCEEEecC---CHHH
Q 006251 531 VKPFCAI-YSSFLQ-RGYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHC-GAFDVT-FMSCLPNMVVMAPS---DEAE 602 (654)
Q Consensus 531 ~~Pi~~t-fa~Fl~-ra~dQI~~~~a~~~lp-V~~v~~~~G~~g~dG~tHq-~~edla-~~r~iPnl~V~~Ps---D~~E 602 (654)
.+.+|-+ -..|.. ..++. ++.++..++| ++++.+..++. -+|++.. ..+|+. .++++ |+.++.|. |..+
T Consensus 188 ~~vv~i~GDG~l~eG~~~Ea-l~~A~~~~L~~livI~dnN~~~-i~~~~~~~~~~d~~~~~~a~-G~~~~~~vdG~d~~~ 264 (711)
T 3uk1_A 188 HHTYVFLGDGCLMEGISHEA-CSLAGTLKLNKLIALYDDNGIS-IDGDVVNWFHDDTPKRFEAY-GWNVIPNVNGHDVDA 264 (711)
T ss_dssp CCEEEEECHHHHHSHHHHHH-HHHHHHTTCTTEEEEEEECSEE-TTEEGGGTCCCCHHHHHHHT-TCEEEEEEETTCHHH
T ss_pred CeEEEEECCcchhhccHHHH-HHHHHHhCCCcEEEEEECCCcc-cccchhhhcCCCHHHHHHHc-CCcEEEEeCCCCHHH
Confidence 3445544 666653 45555 4677888998 77787776642 2343332 223433 44555 88888764 7888
Q ss_pred HHHHHHHHHhCCCCcEEEEecC
Q 006251 603 LMHMVATAAVIDDRPSCFRFPR 624 (654)
Q Consensus 603 ~~~ll~~al~~~~~P~~ir~~r 624 (654)
+..+++.|. ..++|++|...-
T Consensus 265 l~~Al~~A~-~~~~P~lI~v~T 285 (711)
T 3uk1_A 265 IDAAIAKAK-RSDKPSLICCKT 285 (711)
T ss_dssp HHHHHHHHT-TCSSCEEEEEEC
T ss_pred HHHHHHHHH-hCCCCEEEEEcc
Confidence 999999885 468999987653
No 82
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=69.79 E-value=34 Score=37.92 Aligned_cols=114 Identities=11% Similarity=0.065 Sum_probs=69.7
Q ss_pred CccccchhHHHHHHHHHHHHhc-CCeeEEe-ehHHHHHhHHHHHHHhhhcCCCCEEEEEecCCc--cCCCCCCCCCh---
Q 006251 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGA--- 580 (654)
Q Consensus 508 R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~-tfa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~--~g~dG~tHq~~--- 580 (654)
|++. ...|++++.+|.|+|+. | ..+|. |..+=...++.-| ..+...+.||+++...... .+.+...||..
T Consensus 65 ~~i~-~~~E~~A~~~A~GyAr~tG-~~v~~~tsGpG~~N~~~gi-~~A~~~~vPlv~itg~~~~~~~~~~~~~~~~~~~~ 141 (570)
T 2vbf_A 65 KWIG-NANELNASYMADGYARTKK-AAAFLTTFGVGELSAINGL-AGSYAENLPVVEIVGSPTSKVQNDGKFVHHTLADG 141 (570)
T ss_dssp EEEE-CSSHHHHHHHHHHHHHHHS-CEEEEEETTHHHHHHHHHH-HHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSS
T ss_pred eEEC-cCcHHHHHHHHHHHHHHhC-CeEEEEcCCCCHHHHHHHH-HHHhhhCCCEEEEeCCCCHHHhhccccceeecccc
Confidence 5555 48999999999999964 8 44443 4655554555554 3555679999988643322 23333455521
Q ss_pred ---hhHHHHhcCCCCEEEecC--CHHHHHHHHHHHHhCCCCcEEEEecCC
Q 006251 581 ---FDVTFMSCLPNMVVMAPS--DEAELMHMVATAAVIDDRPSCFRFPRG 625 (654)
Q Consensus 581 ---edla~~r~iPnl~V~~Ps--D~~E~~~ll~~al~~~~~P~~ir~~r~ 625 (654)
+...+++.+.-.....+. -+..+..+++.|... .+||+|-+|..
T Consensus 142 ~~~~~~~~~~~~tk~~~~v~~~~~~~~l~~A~~~A~~~-~GPV~l~iP~d 190 (570)
T 2vbf_A 142 DFKHFMKMHEPVTAARTLLTAENATYEIDRVLSQLLKE-RKPVYINLPVD 190 (570)
T ss_dssp CCCHHHHHTGGGCSEEEECCTTTHHHHHHHHHHHHHHH-CCCEEEEEEHH
T ss_pred chHHHHHHhhhhEEEEEEECcccHHHHHHHHHHHHhhC-CCCEEEEcchh
Confidence 235677777755444443 123344455555533 59999999875
No 83
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=68.57 E-value=20 Score=41.01 Aligned_cols=92 Identities=10% Similarity=0.067 Sum_probs=55.4
Q ss_pred CeeEEee-hHHHHH-hHHHHHHHhhhcCCCC-EEEEEecCCccCCCCCCCC-ChhhHH-HHhcCCCCEEEecC---CHHH
Q 006251 531 VKPFCAI-YSSFLQ-RGYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHC-GAFDVT-FMSCLPNMVVMAPS---DEAE 602 (654)
Q Consensus 531 ~~Pi~~t-fa~Fl~-ra~dQI~~~~a~~~lp-V~~v~~~~G~~g~dG~tHq-~~edla-~~r~iPnl~V~~Ps---D~~E 602 (654)
.+.+|-+ -..|.. ..++. ++.++..++| ++++.+..++ +-+|++.. ..+|+. .++++ |+.++.+. |..+
T Consensus 149 ~~v~~i~GDG~l~eG~~~Ea-l~~A~~~~L~~livi~dnN~~-~i~~~~~~~~~~d~~~~~~a~-G~~~~~~vdG~d~~~ 225 (663)
T 3kom_A 149 HHTYVFLGDGCLMEGVSHEA-CSLAGTLGLNKLVAFWDDNNI-SIDGDTKGWFSDNTPERFRAY-GWHVIENVDGHDFVA 225 (663)
T ss_dssp CCEEEEECHHHHHSHHHHHH-HHHHHHHTCTTEEEEEEECC------CGGGTCCCCHHHHHHHT-TCEEEEEEETTCHHH
T ss_pred CeEEEEECchhhhhchHHHH-HHHHHHhCCCeEEEEEECCCc-ccccchhhhcchhHHHHHHHC-CCeEEEEEcCCCHHH
Confidence 3445544 566653 44555 4667788987 7777776664 22333322 123333 44555 89888555 6888
Q ss_pred HHHHHHHHHhCCCCcEEEEecCC
Q 006251 603 LMHMVATAAVIDDRPSCFRFPRG 625 (654)
Q Consensus 603 ~~~ll~~al~~~~~P~~ir~~r~ 625 (654)
+..+++.|....++|++|.....
T Consensus 226 l~~al~~A~~~~~~P~lI~~~T~ 248 (663)
T 3kom_A 226 IEKAINEAHSQQQKPTLICCKTV 248 (663)
T ss_dssp HHHHHHHHHHCSSSCEEEEEECC
T ss_pred HHHHHHHHHhcCCCCEEEEEecc
Confidence 88999988643689999876533
No 84
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=67.77 E-value=15 Score=38.79 Aligned_cols=109 Identities=17% Similarity=0.098 Sum_probs=60.6
Q ss_pred ccchhHHHHHHHHHHHHhc----C--CeeEEee-hHHHHHh-HHHHHHHhhhcCCCCEEEEEecCCccCCCCCCC-----
Q 006251 511 DVGIAEQHAVTFAAGLASE----G--VKPFCAI-YSSFLQR-GYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTH----- 577 (654)
Q Consensus 511 d~GIaE~~mvg~AaGlA~~----G--~~Pi~~t-fa~Fl~r-a~dQI~~~~a~~~lpV~~v~~~~G~~g~dG~tH----- 577 (654)
.+|.-++ .+++|.|+|+. + .++++.+ -..|.+- ..+. ++.++..++|+++++...++ |-.+++.
T Consensus 142 ~~g~lG~-~l~~a~G~A~a~k~~~~~~~vv~i~GDGa~~~G~~~Ea-l~~A~~~~lpvi~vv~NN~~-gi~~~~~~~~~~ 218 (367)
T 1umd_A 142 VASPIAS-HVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAG-INFAAVQGAPAVFIAENNFY-AISVDYRHQTHS 218 (367)
T ss_dssp CCSSTTT-THHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHH-HHHHHHTTCSEEEEEEECSE-ETTEEHHHHCSS
T ss_pred CCchhhh-hhhHHHHHHHHHHHhCCCCeEEEEEcccccccCcHHHH-HHHHHHhCcCEEEEEecCCe-eeccChhhccCC
Confidence 4444443 23555555543 3 4455554 6677544 3343 46677889999999877663 3333321
Q ss_pred CChhhHHHHhcCCCCEEEecCCHHHHHHHHHHHHh---CCCCcEEEEec
Q 006251 578 CGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAV---IDDRPSCFRFP 623 (654)
Q Consensus 578 q~~edla~~r~iPnl~V~~PsD~~E~~~ll~~al~---~~~~P~~ir~~ 623 (654)
....+++-.-.+|.+.| .-.|..++..+++.+++ ..++|++|-..
T Consensus 219 ~d~~~~a~a~G~~~~~V-dg~d~~av~~a~~~A~~~a~~~~gP~lIe~~ 266 (367)
T 1umd_A 219 PTIADKAHAFGIPGYLV-DGMDVLASYYVVKEAVERARRGEGPSLVELR 266 (367)
T ss_dssp SCSGGGGGGTTSCEEEE-ETTCHHHHHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred CCHHHHHHHcCCcEEEe-CCCCHHHHHHHHHHHHHHHHhcCCCEEEEEE
Confidence 11233332334565543 45677777666666553 35789988653
No 85
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=64.58 E-value=25 Score=36.43 Aligned_cols=37 Identities=24% Similarity=0.316 Sum_probs=26.8
Q ss_pred hhhc-CCeEEeecCCCCHHHHHHHHHHhHhCCCCCCEEEEEEe
Q 006251 387 FEEL-GLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVT 428 (654)
Q Consensus 387 fea~-G~~~ig~vDGhDi~~L~~al~~ak~~~~~gP~lI~v~T 428 (654)
++.. ||.++.| .|..+....++.+.+. ++|++|-..+
T Consensus 138 l~~iP~l~V~~P---sd~~e~~~~l~~A~~~--~~Pv~i~~p~ 175 (338)
T 1qs0_B 138 FTQVCGLRTVMP---SNPYDAKGLLIASIEC--DDPVIFLEPK 175 (338)
T ss_dssp HTTSTTCEEECC---CSHHHHHHHHHHHHHS--SSCEEEEEEG
T ss_pred HhcCCCCEEEee---CCHHHHHHHHHHHHhc--CCcEEEEEch
Confidence 4455 8888766 5778888888877764 6899986543
No 86
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=63.89 E-value=12 Score=40.34 Aligned_cols=101 Identities=12% Similarity=0.013 Sum_probs=56.8
Q ss_pred HHHHHHHhc------CCeeEEee-hHHHHHhHHHHHHHhhhcCCCCEEEEEecCCccCCCCCCC--C-ChhhH---HHHh
Q 006251 521 TFAAGLASE------GVKPFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTH--C-GAFDV---TFMS 587 (654)
Q Consensus 521 g~AaGlA~~------G~~Pi~~t-fa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~~g~dG~tH--q-~~edl---a~~r 587 (654)
..|.|+|+. +..+++.+ -..|.+-.+-+-++.++..++||++++...++. ..+++. . ...|+ +-.-
T Consensus 188 p~AvGaA~A~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~Vv~NN~~g-i~~~~~~~~~~~~d~a~~a~a~ 266 (407)
T 1qs0_A 188 VQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAPVILNVVNNQWA-ISTFQAIAGGESTTFAGRGVGC 266 (407)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHHTCCEEEEEEECSEE-TTEEGGGGTTTTCCSTHHHHHT
T ss_pred hHHHHHHHHHHHhCCCCEEEEEECCchhhcChHHHHHHHHHHHCcCEEEEEECCCcc-eeeccccccCCCCCHHHHHHHc
Confidence 445555543 44555555 566654333233577778899999998766542 122221 1 12333 3233
Q ss_pred cCCCCEEEecCCHHHHHHHHHHHHh---CCCCcEEEEec
Q 006251 588 CLPNMVVMAPSDEAELMHMVATAAV---IDDRPSCFRFP 623 (654)
Q Consensus 588 ~iPnl~V~~PsD~~E~~~ll~~al~---~~~~P~~ir~~ 623 (654)
.+|++.| -=-|+.++..+++.|++ ..++|++|-..
T Consensus 267 G~~~~~V-dG~D~~av~~a~~~A~~~ar~~~gP~lIe~~ 304 (407)
T 1qs0_A 267 GIASLRV-DGNDFVAVYAASRWAAERARRGLGPSLIEWV 304 (407)
T ss_dssp TCEEEEE-ETTCHHHHHHHHHHHHHHHHTTSCCEEEEEE
T ss_pred CCeEEEE-cCCCHHHHHHHHHHHHHHHHhcCCCEEEEEE
Confidence 4555443 33477888888888764 26789988653
No 87
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=61.56 E-value=25 Score=40.06 Aligned_cols=90 Identities=16% Similarity=0.143 Sum_probs=56.8
Q ss_pred CeeEEee-hHHHHH-hHHHHHHHhhhcCCCC-EEEEEecCCccCCCCCCCC-ChhhHH-HHhcCCCCEEEecC---CHHH
Q 006251 531 VKPFCAI-YSSFLQ-RGYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHC-GAFDVT-FMSCLPNMVVMAPS---DEAE 602 (654)
Q Consensus 531 ~~Pi~~t-fa~Fl~-ra~dQI~~~~a~~~lp-V~~v~~~~G~~g~dG~tHq-~~edla-~~r~iPnl~V~~Ps---D~~E 602 (654)
.+.+|-+ -..|.. .+++. ++.++..++| ++++....++. -+|++.. ..+|+. .++++ |+.++.+. |..+
T Consensus 151 ~~v~~~~GDG~~~eG~~~Ea-l~~A~~~~L~~li~i~~nN~~~-i~~~~~~~~~~d~~~~~~a~-G~~~~~~vdG~d~~~ 227 (651)
T 2e6k_A 151 HYTYVLASDGDLMEGVSGEA-ASLAGHWGLSKLIVFWDDNRIS-IDGPTDLAFTEDVLARYRAY-GWQTLRVEDVNDLEA 227 (651)
T ss_dssp CCEEEEECHHHHHSHHHHHH-HHHHHHTTCTTEEEEEEECCEE-TTEEGGGTCCSCHHHHHHHT-TCEEEEESCTTCHHH
T ss_pred CEEEEEEChhhhchhHHHHH-HHHHHHcCCCeEEEEEECCCcc-cccccccccCccHHHHHHhC-CCeEEEEeCCCCHHH
Confidence 4455555 566653 45555 4667788988 88888776642 2233221 134444 34444 89888454 6888
Q ss_pred HHHHHHHHHhCCCCcEEEEecC
Q 006251 603 LMHMVATAAVIDDRPSCFRFPR 624 (654)
Q Consensus 603 ~~~ll~~al~~~~~P~~ir~~r 624 (654)
+..+++.+.+ .++|++|...-
T Consensus 228 l~~al~~a~~-~~~P~lI~~~t 248 (651)
T 2e6k_A 228 LRKAIKLAKL-DERPTLIAVRS 248 (651)
T ss_dssp HHHHHHHHHH-SSSCEEEEEEC
T ss_pred HHHHHHHHHH-CCCCEEEEEEe
Confidence 9999998865 78999886543
No 88
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=60.71 E-value=22 Score=40.51 Aligned_cols=100 Identities=18% Similarity=0.211 Sum_probs=62.8
Q ss_pred HHHHHHHHhc-------------CCeeEEee-hHHHHH-hHHHHHHHhhhcCCCC-EEEEEecCCccCCCCCCCC-Chhh
Q 006251 520 VTFAAGLASE-------------GVKPFCAI-YSSFLQ-RGYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHC-GAFD 582 (654)
Q Consensus 520 vg~AaGlA~~-------------G~~Pi~~t-fa~Fl~-ra~dQI~~~~a~~~lp-V~~v~~~~G~~g~dG~tHq-~~ed 582 (654)
++.|.|+|+. ..+.+|-+ -..|.. .+++. ++.++..++| ++++....++. -+|++.. ..+|
T Consensus 120 l~~AvG~AlA~~~~~~~~n~~~~d~~v~~v~GDG~~~eG~~~Ea-l~~A~~~~L~~livi~nnN~~~-i~~~~~~~~~~d 197 (632)
T 3l84_A 120 VANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGISYEA-CSLAGLHKLDNFILIYDSNNIS-IEGDVGLAFNEN 197 (632)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCCCEEEEEEHHHHHSHHHHHH-HHHHHHTTCTTEEEEEEECSEE-TTEEGGGTCCCC
T ss_pred HHHHHHHHHHHHhhccccccCCCCCeEEEEECCcchhhccHHHH-HHHHHHcCCCcEEEEEECCCcc-cccchhhhcChh
Confidence 4556666653 34455555 666653 45555 4667788987 77777776652 2333321 1233
Q ss_pred H-HHHhcCCCCEEEecC---CHHHHHHHHHHHHhCCCCcEEEEecC
Q 006251 583 V-TFMSCLPNMVVMAPS---DEAELMHMVATAAVIDDRPSCFRFPR 624 (654)
Q Consensus 583 l-a~~r~iPnl~V~~Ps---D~~E~~~ll~~al~~~~~P~~ir~~r 624 (654)
+ ..++++ |+.++ +. |..++..+++.|. ..++|++|....
T Consensus 198 ~~~~~~a~-G~~~~-~vdGhd~~~l~~al~~A~-~~~~P~lI~v~T 240 (632)
T 3l84_A 198 VKMRFEAQ-GFEVL-SINGHDYEEINKALEQAK-KSTKPCLIIAKT 240 (632)
T ss_dssp HHHHHHHT-TCEEE-EEETTCHHHHHHHHHHHH-TCSSCEEEEEEC
T ss_pred HHHHHHHc-CCeEE-EEeeCCHHHHHHHHHHHH-hCCCCEEEEEee
Confidence 3 345555 89888 66 6888889999885 478999987543
No 89
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=59.56 E-value=91 Score=34.22 Aligned_cols=114 Identities=13% Similarity=0.058 Sum_probs=68.9
Q ss_pred CccccchhHHHHHHHHHHHHhc-CCeeEEe-ehHHHHHhHHHHHHHhhhcCCCCEEEEEecCCc--cCCCCCCCCCh---
Q 006251 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGA--- 580 (654)
Q Consensus 508 R~id~GIaE~~mvg~AaGlA~~-G~~Pi~~-tfa~Fl~ra~dQI~~~~a~~~lpV~~v~~~~G~--~g~dG~tHq~~--- 580 (654)
|++. ...|++++.+|.|+|+. | .++|. |..+=...++.-| ..+...+.||+++...... .+.+...|+..
T Consensus 45 ~~i~-~~~E~~A~~~A~Gyar~tg-~~v~~~tsGpG~~N~~~gv-~~A~~~~~Pll~itg~~p~~~~~~~~~~~~~~g~~ 121 (552)
T 1ovm_A 45 CWVG-CANELNASYAADGYARCKG-FAALLTTFGVGELSAMNGI-AGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDG 121 (552)
T ss_dssp EEEE-CSSHHHHHHHHHHHHHHHS-CEEEEEETTHHHHHTHHHH-HHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSS
T ss_pred eEEe-eCcHHHHHHHHHHHHHhhC-CcEEEEccCCcHHHHHHHH-HHHhhhcCCEEEEECCCCHHHHhcccccccccCCC
Confidence 4554 49999999999999986 6 55444 3544334444443 4556689999988633222 22222233211
Q ss_pred ---hhHHHHhcCCCCEEEecCC--HHHHHHHHHHHHhCCCCcEEEEecCC
Q 006251 581 ---FDVTFMSCLPNMVVMAPSD--EAELMHMVATAAVIDDRPSCFRFPRG 625 (654)
Q Consensus 581 ---edla~~r~iPnl~V~~PsD--~~E~~~ll~~al~~~~~P~~ir~~r~ 625 (654)
+...+++.+--.....+.+ +..+..+++.|... .+|++|-+|..
T Consensus 122 ~~q~~~~~~~~~tk~~~~v~~~~~~~~i~~A~~~a~~~-~GPV~l~iP~d 170 (552)
T 1ovm_A 122 EFRHFYHMSEPITVAQAVLTEQNACYEIDRVLTTMLRE-RRPGYLMLPAD 170 (552)
T ss_dssp CCSHHHHHTGGGCSEEEECCTTTHHHHHHHHHHHHHHH-TCCEEEEEEHH
T ss_pred cHHHHHHHHHhheeEEEEEccccHHHHHHHHHHHHHhC-CCCEEEEeehh
Confidence 2345777776555555431 44556666666543 49999999875
No 90
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=59.13 E-value=24 Score=40.66 Aligned_cols=91 Identities=14% Similarity=0.107 Sum_probs=57.3
Q ss_pred eeEEee-hHHHHH-hHHHHHHHhhhcCCCC-EEEEEecCCccCCCCCCCC-ChhhHH-HHhcCCCCEEEec---CCHHHH
Q 006251 532 KPFCAI-YSSFLQ-RGYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHC-GAFDVT-FMSCLPNMVVMAP---SDEAEL 603 (654)
Q Consensus 532 ~Pi~~t-fa~Fl~-ra~dQI~~~~a~~~lp-V~~v~~~~G~~g~dG~tHq-~~edla-~~r~iPnl~V~~P---sD~~E~ 603 (654)
+.+|-+ -..+.. .+++. ++.++..++| ++++.+..++. -+|++.. ..+|++ .+++. |+.++.- -|..++
T Consensus 170 ~v~~~~GDG~l~eG~~~EA-l~~A~~~~L~nli~i~d~N~~s-i~~~~~~~~~~~~~~~~~a~-G~~~~~V~DG~D~~al 246 (700)
T 3rim_A 170 YIYVIASDGDIEEGVTSEA-SSLAAVQQLGNLIVFYDRNQIS-IEDDTNIALCEDTAARYRAY-GWHVQEVEGGENVVGI 246 (700)
T ss_dssp CEEEEEEHHHHHSHHHHHH-HHHHHHTTCTTEEEEEEECSEE-TTEEGGGTCCCCHHHHHHHH-TCEEEEEECTTCHHHH
T ss_pred eEEEEECCcccccChHHHH-HHHHHHcCCCcEEEEEECCCcc-cccchhhccchhHHHHHHHc-CCeEEEECCCCCHHHH
Confidence 444444 555553 34555 4778889996 88888777652 2333321 134433 34444 8888765 478888
Q ss_pred HHHHHHHHhCCCCcEEEEecCC
Q 006251 604 MHMVATAAVIDDRPSCFRFPRG 625 (654)
Q Consensus 604 ~~ll~~al~~~~~P~~ir~~r~ 625 (654)
..+++.|....++|++|.....
T Consensus 247 ~~Al~~A~~~~~~P~lI~~~T~ 268 (700)
T 3rim_A 247 EEAIANAQAVTDRPSFIALRTV 268 (700)
T ss_dssp HHHHHHHHHCCSSCEEEEEECC
T ss_pred HHHHHHHHHcCCCCEEEEEEEE
Confidence 8888888654689999976543
No 91
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=57.41 E-value=37 Score=38.90 Aligned_cols=92 Identities=12% Similarity=0.111 Sum_probs=57.8
Q ss_pred CeeEEee-hHHHHH-hHHHHHHHhhhcCCC-CEEEEEecCCccCCCCCCCC-ChhhHH-HHhcCCCCEEEecC----CHH
Q 006251 531 VKPFCAI-YSSFLQ-RGYDQVVHDVDLQKL-PVRFAMDRAGLVGADGPTHC-GAFDVT-FMSCLPNMVVMAPS----DEA 601 (654)
Q Consensus 531 ~~Pi~~t-fa~Fl~-ra~dQI~~~~a~~~l-pV~~v~~~~G~~g~dG~tHq-~~edla-~~r~iPnl~V~~Ps----D~~ 601 (654)
.+.+|-+ -..|.. ..++. ++.++..++ |++++....++. -+|++.. ..+|+. .++++ |+.++.+. |..
T Consensus 160 ~~v~~i~GDG~~~eG~~~Ea-l~~A~~~~L~~li~i~~nN~~~-i~~~~~~~~~~d~~~~~~a~-G~~~~~~vdG~~d~~ 236 (675)
T 1itz_A 160 HYTYVILGDGCQMEGIANEA-CSLAGHWGLGKLIAFYDDNHIS-IDGDTEIAFTEDVSTRFEAL-GWHTIWVKNGNTGYD 236 (675)
T ss_dssp CCEEEEECHHHHHSHHHHHH-HHHHHHTTCTTEEEEEEECSEE-TTEEGGGTCCSCHHHHHHHT-TCEEEEESCTTTCHH
T ss_pred CEEEEEECHhHhchhHHHHH-HHHHHHhCCCcEEEEEECCCcc-CCCChhhhcChhHHHHHHhC-CCEEEEEecCCCCHH
Confidence 3455555 566653 45565 466778887 688888776652 1232211 134443 44555 89988554 677
Q ss_pred HHHHHHHHHHhCCCCcEEEEecCC
Q 006251 602 ELMHMVATAAVIDDRPSCFRFPRG 625 (654)
Q Consensus 602 E~~~ll~~al~~~~~P~~ir~~r~ 625 (654)
++..+++.|.+..++|++|...-.
T Consensus 237 ~l~~al~~a~~~~~~P~lI~~~T~ 260 (675)
T 1itz_A 237 DIRAAIKEAKAVTDKPTLIKVTTT 260 (675)
T ss_dssp HHHHHHHHHHHCCSSCEEEEEECC
T ss_pred HHHHHHHHHHHCCCCeEEEEEeee
Confidence 888999988654689998876543
No 92
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=56.78 E-value=14 Score=39.14 Aligned_cols=99 Identities=16% Similarity=0.103 Sum_probs=55.8
Q ss_pred HHHHHHHhc------CCeeEEee-hHHHHHh-HHHHHHHhhhcCCCCEEEEEecCCccCCCCC--CCCChhhHHH-HhcC
Q 006251 521 TFAAGLASE------GVKPFCAI-YSSFLQR-GYDQVVHDVDLQKLPVRFAMDRAGLVGADGP--THCGAFDVTF-MSCL 589 (654)
Q Consensus 521 g~AaGlA~~------G~~Pi~~t-fa~Fl~r-a~dQI~~~~a~~~lpV~~v~~~~G~~g~dG~--tHq~~edla~-~r~i 589 (654)
.+|.|+|+. +..+++.+ -..|.+- .++. ++.++..++||++++...++. ...+ ......|++- .-.+
T Consensus 147 p~A~G~A~A~~~~~~~~~vv~~~GDGa~~~G~~~Ea-ln~A~~~~lpvi~vv~NN~~g-~~t~~~~~~~~~~~~~ra~g~ 224 (365)
T 2ozl_A 147 PLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEA-YNMAALWKLPCIFICENNRYG-MGTSVERAAASTDYYKRGDFI 224 (365)
T ss_dssp HHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHHHH-HHHHHHTTCCEEEEEEECSEE-TTEEHHHHCSCCCGGGTTTTS
T ss_pred HHHHHHHHHHHhcCCCceEEEEECchhhhccHHHHH-HHHHHHHCcCEEEEEECCCcc-cCCCcccccCCCCHHHHhCCC
Confidence 455555543 34455554 5555442 3444 577888999999998666541 1111 0111122211 1235
Q ss_pred CCCEEEecCCHHHHHHHHHHHHh---CCCCcEEEEe
Q 006251 590 PNMVVMAPSDEAELMHMVATAAV---IDDRPSCFRF 622 (654)
Q Consensus 590 Pnl~V~~PsD~~E~~~ll~~al~---~~~~P~~ir~ 622 (654)
|++.| -=-|+.++..+++.|++ ..++|++|-.
T Consensus 225 p~~~V-dG~D~~av~~a~~~A~~~~r~~~gP~lIe~ 259 (365)
T 2ozl_A 225 PGLRV-DGMDILCVREATRFAAAYCRSGKGPILMEL 259 (365)
T ss_dssp CEEEE-ETTCHHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CEEEE-eCCCHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 65554 33478898888887764 3679999854
No 93
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=54.69 E-value=28 Score=39.40 Aligned_cols=98 Identities=14% Similarity=0.183 Sum_probs=57.5
Q ss_pred HHHHHHHHhc-------CCeeEEee-hHHHHH-hHHHHHHHhhhcCCCC-EEEEEecCCccCCCCCCCCC--hhhHH-HH
Q 006251 520 VTFAAGLASE-------GVKPFCAI-YSSFLQ-RGYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHCG--AFDVT-FM 586 (654)
Q Consensus 520 vg~AaGlA~~-------G~~Pi~~t-fa~Fl~-ra~dQI~~~~a~~~lp-V~~v~~~~G~~g~dG~tHq~--~edla-~~ 586 (654)
++.|.|+|+. ..+.+|-+ -..|.. .+++. ++.++..++| ++++....++ +-+|++... .+|+. .+
T Consensus 127 l~~A~G~AlA~~~~~~~~~~vv~v~GDG~~~eG~~~Ea-l~~A~~~~l~~livi~nnN~~-~i~~~~~~~~~~~~~~~~~ 204 (616)
T 3mos_A 127 LGAACGMAYTGKYFDKASYRVYCLLGDGELSEGSVWEA-MAFASIYKLDNLVAILDINRL-GQSDPAPLQHQMDIYQKRC 204 (616)
T ss_dssp HHHHHHHHHHHHHTSCCSCCEEEEEETGGGGSHHHHHH-HHHHHHTTCTTEEEEEEECSB-CSSSBCTTTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCCCEEEEEECccccccCcHHHH-HHHHHHcCCCcEEEEEECCCC-CCcCCcccccChHHHHHHH
Confidence 5666676664 24455555 666652 44555 4667788887 5566666654 234444332 34433 34
Q ss_pred hcCCCCEEEecC---CHHHHHHHHHHHHhCCCCcEEEEecC
Q 006251 587 SCLPNMVVMAPS---DEAELMHMVATAAVIDDRPSCFRFPR 624 (654)
Q Consensus 587 r~iPnl~V~~Ps---D~~E~~~ll~~al~~~~~P~~ir~~r 624 (654)
+++ |+.++ +. |..++..+++.+ .++|++|....
T Consensus 205 ~a~-G~~~~-~VdG~d~~~l~~al~~~---~~~P~lI~v~T 240 (616)
T 3mos_A 205 EAF-GWHAI-IVDGHSVEELCKAFGQA---KHQPTAIIAKT 240 (616)
T ss_dssp HHT-TCEEE-EEETTCHHHHHHHHHSC---CSSCEEEEEEC
T ss_pred HHc-CCeEE-EEcCCCHHHHHHHHHhc---CCCCEEEEEEE
Confidence 555 88877 66 556666666433 57899986543
No 94
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=50.21 E-value=71 Score=35.98 Aligned_cols=50 Identities=10% Similarity=0.347 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHH-HHHHhhcCCCEEEEEECCCC
Q 006251 258 SISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEA-MNNAGFLDANLIVVLNDNKQ 315 (654)
Q Consensus 258 ~is~AlGmAlA~kl~g~~~~VvaviGDGal~eG~~~EA-ln~A~~~~lnLi~Il~dN~~ 315 (654)
.+++|.|+|++ | -+.+++.+++.. + .++|- ++.++..++|+++++..-+.
T Consensus 373 ~~~~a~G~A~~----G-~rp~~~~~~~F~-~--~a~dqi~~~~a~~~~pvv~~~~~~g~ 423 (621)
T 2o1s_A 373 AVTFAAGLAIG----G-YKPIVAIYSTFL-Q--RAYDQVLHDVAIQKLPVLFAIDRAGI 423 (621)
T ss_dssp HHHHHHHHHHT----T-CEEEEEEETTGG-G--GGHHHHHHTTTTTTCCCEEEEESCBC
T ss_pred HHHHHHHHHHC----C-CEEEEEehHhHH-H--HHHHHHHHHHHhcCCCEEEEEECCcc
Confidence 45667777764 3 466788888874 3 56765 67788889999999966553
No 95
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=49.13 E-value=66 Score=33.41 Aligned_cols=36 Identities=14% Similarity=0.186 Sum_probs=25.3
Q ss_pred hhhc-CCeEEeecCCCCHHHHHHHHHHhHhCCCCCCEEEEEE
Q 006251 387 FEEL-GLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVV 427 (654)
Q Consensus 387 fea~-G~~~ig~vDGhDi~~L~~al~~ak~~~~~gP~lI~v~ 427 (654)
+... |+.++.| .|..+....++.+.+. ++|++|-..
T Consensus 154 l~~iP~l~V~~P---sd~~e~~~~l~~a~~~--~~Pv~i~~p 190 (342)
T 2bfd_B 154 FAHCPGIKVVIP---RSPFQAKGLLLSCIED--KNPCIFFEP 190 (342)
T ss_dssp HHTSTTCEEECC---SSHHHHHHHHHHHHHS--SSCEEEEEE
T ss_pred HhcCCCcEEEee---CCHHHHHHHHHHHHhc--CCcEEEEec
Confidence 3444 7887766 5677777778777664 689988544
No 96
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=46.24 E-value=94 Score=31.82 Aligned_cols=46 Identities=24% Similarity=0.363 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHHcCCCCeEEEE-EcCCCcccchHHHHHHH-Hhh--------cCCCEEEEEE
Q 006251 258 SISAGLGMAVARDILGKNNNVISV-IGDGAMTAGQAYEAMNN-AGF--------LDANLIVVLN 311 (654)
Q Consensus 258 ~is~AlGmAlA~kl~g~~~~Vvav-iGDGal~eG~~~EAln~-A~~--------~~lnLi~Il~ 311 (654)
.+++|.|+|++ | -+.++++ .+++. + .+++.+.+ ++. .+.|+++++.
T Consensus 63 ~v~~a~G~A~~----G-~~p~~~~t~~~F~-~--~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~ 118 (324)
T 1umd_B 63 IVGAALGMAAH----G-LRPVAEIQFADYI-F--PGFDQLVSQVAKLRYRSGGQFTAPLVVRMP 118 (324)
T ss_dssp HHHHHHHHHHH----T-CEEEEECSSGGGC-G--GGHHHHHHTTTTHHHHTTTSSCCCCEEEEE
T ss_pred HHHHHHHHHHC----C-CEEEEEeccHhHH-H--HHHHHHHHHHHHHHhhcCCCCcCCEEEEEc
Confidence 36677777765 3 2444444 88885 3 68888854 443 5789999887
No 97
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=40.56 E-value=1.1e+02 Score=31.82 Aligned_cols=48 Identities=15% Similarity=0.093 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHHcCCCCeEEEE-EcCCCcccchHHHHHHHHhh---------cCCCEEEEEECCC
Q 006251 258 SISAGLGMAVARDILGKNNNVISV-IGDGAMTAGQAYEAMNNAGF---------LDANLIVVLNDNK 314 (654)
Q Consensus 258 ~is~AlGmAlA~kl~g~~~~Vvav-iGDGal~eG~~~EAln~A~~---------~~lnLi~Il~dN~ 314 (654)
.+++|.|+|++ | -+.++++ ++|.. + .+++.+.+.+. .++|+++++.. +
T Consensus 74 ~v~~a~G~A~~----G-~rp~~~~~f~~F~-~--~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~-G 131 (341)
T 2ozl_B 74 FAGIAVGAAMA----G-LRPICEFMTFNFS-M--QAIDQVINSAAKTYYMSGGLQPVPIVFRGPN-G 131 (341)
T ss_dssp HHHHHHHHHHT----T-CEEEEECSSGGGG-G--GGHHHHHTTTTTHHHHTTSSCCCCCEEEEEC-S
T ss_pred HHHHHHHHHHC----C-CEEEEEeccHHHH-H--HHHHHHHHHHHHHHhhccccCCCCEEEEEcC-c
Confidence 46677777764 3 3444443 88887 3 68888775432 68999999984 5
No 98
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=37.40 E-value=1e+02 Score=31.64 Aligned_cols=46 Identities=9% Similarity=0.058 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHHcCCCCeEEEE-EcCCCcccchHHHHHHH-Hhh--------cCCCEEEEEE
Q 006251 258 SISAGLGMAVARDILGKNNNVISV-IGDGAMTAGQAYEAMNN-AGF--------LDANLIVVLN 311 (654)
Q Consensus 258 ~is~AlGmAlA~kl~g~~~~Vvav-iGDGal~eG~~~EAln~-A~~--------~~lnLi~Il~ 311 (654)
.+++|.|+|++ | -+.++++ .+++. + .++|.+.+ ++. .+.|++++++
T Consensus 62 ~v~~a~G~A~~----G-~rp~~~~t~~~F~-~--~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~ 117 (324)
T 1w85_B 62 IGGLAIGLALQ----G-FRPVPEIQFFGFV-Y--EVMDSICGQMARIRYRTGGRYHMPITIRSP 117 (324)
T ss_dssp HHHHHHHHHHT----T-CEEEEBCSSGGGG-G--GTHHHHHTTGGGHHHHTTTSSCCCCEEEEE
T ss_pred HHHHHHHHHhC----C-CEEEEEecchhHH-H--HHHHHHHHHHHHHhhhccCCCcCCEEEEEe
Confidence 46677777764 3 2334434 88886 3 68888764 444 6789998876
No 99
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=34.96 E-value=99 Score=34.89 Aligned_cols=29 Identities=14% Similarity=0.164 Sum_probs=22.1
Q ss_pred ecCCHHHHHHHHHHHHhCCCCcEEEEecCC
Q 006251 596 APSDEAELMHMVATAAVIDDRPSCFRFPRG 625 (654)
Q Consensus 596 ~PsD~~E~~~ll~~al~~~~~P~~ir~~r~ 625 (654)
...|..++..+++.+. ..++|++|.....
T Consensus 260 dG~d~~~l~~al~~A~-~~~~P~lI~v~t~ 288 (629)
T 2o1x_A 260 DGHNVQELVWLLERLV-DLDGPTILHIVTT 288 (629)
T ss_dssp ESSCHHHHHHHHHHHT-TSSSEEEEEEECC
T ss_pred CCcCHHHHHHHHHHHH-hcCCCEEEEEEEe
Confidence 3458999999999985 4589999865443
No 100
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=33.88 E-value=1.5e+02 Score=31.12 Aligned_cols=49 Identities=24% Similarity=0.215 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHHcCCCCeEEEE-EcCCCcccchHHHHHHH-Hhhc--------CCCEEEEEECCC
Q 006251 258 SISAGLGMAVARDILGKNNNVISV-IGDGAMTAGQAYEAMNN-AGFL--------DANLIVVLNDNK 314 (654)
Q Consensus 258 ~is~AlGmAlA~kl~g~~~~Vvav-iGDGal~eG~~~EAln~-A~~~--------~lnLi~Il~dN~ 314 (654)
.+++|.|+|++ | -+.++++ ++|.. + .+++.+.+ ++.+ ++|+++++..-+
T Consensus 110 ~v~~a~G~A~~----G-~rpv~~~tf~~Fl-~--~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg 168 (369)
T 1ik6_A 110 ILGFAMGMAMA----G-LKPVAEIQFVDFI-W--LGADELLNHIAKLRYRSGGNYKAPLVVRTPVGS 168 (369)
T ss_dssp HHHHHHHHHHT----T-CEEEEECCCC-------CCHHHHHHHHHHHHC------CCCCEEEEEECC
T ss_pred HHHHHHHHHHC----C-CeeEEEecchhHH-H--HHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCC
Confidence 46677777764 3 3445545 89976 3 67888755 5544 899999987544
No 101
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=29.52 E-value=2.2e+02 Score=33.59 Aligned_cols=66 Identities=11% Similarity=0.025 Sum_probs=39.0
Q ss_pred CCeeEEee-hHHHHH-hHHHHHHHhhhcCCCC-EEEEEecCCccCCCCCCCC---ChhhHHHHhcCCCCEEEec
Q 006251 530 GVKPFCAI-YSSFLQ-RGYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHC---GAFDVTFMSCLPNMVVMAP 597 (654)
Q Consensus 530 G~~Pi~~t-fa~Fl~-ra~dQI~~~~a~~~lp-V~~v~~~~G~~g~dG~tHq---~~edla~~r~iPnl~V~~P 597 (654)
+.+.++-+ -..... .+++. ++.++..+++ ++++...-+. .-+|++-- ..+++.-+..-.|+.++.-
T Consensus 221 ~~~v~aviGDG~l~eG~~~EA-l~~A~~~~L~nli~Vvn~N~~-si~~~v~~~~~~~~~l~~~~~~~G~~~~~v 292 (886)
T 2qtc_A 221 KQTVYAFLGDGEMDEPESKGA-ITIATREKLDNLVFVINCNLQ-RLDGPVTGNGKIINELEGIFEGAGWNVIKV 292 (886)
T ss_dssp TCCEEEEEETGGGGSHHHHTT-HHHHHHTTCTTEEEEEEECSB-CSSSBSCTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred CCEEEEEECCccccccchHHH-HHHHHHcCCCcEEEEEECCCc-ccCCCccccccccHHHHHHHHhCCCCEEEE
Confidence 45566655 444432 45565 4777888874 8888876664 23555543 2455554444458877643
No 102
>3kp1_E D-ornithine aminomutase S component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_E* 3koy_E* 3koz_E* 3kp0_E* 3kox_E*
Probab=26.77 E-value=41 Score=30.11 Aligned_cols=45 Identities=24% Similarity=0.348 Sum_probs=33.5
Q ss_pred cccCCCCHHHHHHHHHHHHHHHHHHhhc-cCCCCCCCccHHHHHHHHHh
Q 006251 150 IHMKNLSTEDLEQLAAELRADIVNSVSK-TGGHLSANLGVVELTLALHR 197 (654)
Q Consensus 150 ~~~~~l~~~~L~~la~~lR~~il~~v~~-~~GH~gsslg~vel~~aL~~ 197 (654)
.|++||+.+||++.|.++-+.|++-+.. ...|...| +|=++.+..
T Consensus 12 ~hl~~l~d~el~~rar~LA~kIv~pv~el~~~hTTvS---VERtVlr~m 57 (121)
T 3kp1_E 12 AHLANLSDEELQTRFWEMAEKIVDPLLDLGKKNTTPS---IERSVLLRM 57 (121)
T ss_dssp GGGTTCCHHHHHHHHHHHHHHHHHHHHHHHHHEECHH---HHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHcCCccH---HHHHHHHHh
Confidence 5899999999999999998888876643 45676555 555555543
No 103
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=25.46 E-value=1.6e+02 Score=35.01 Aligned_cols=109 Identities=13% Similarity=0.002 Sum_probs=63.9
Q ss_pred cccchhHHHHHHHHHHHHhc----C-------CeeEEee-hHHH-HH-hHHHHHHHhhhcCCCC---EEEEEecCCccCC
Q 006251 510 FDVGIAEQHAVTFAAGLASE----G-------VKPFCAI-YSSF-LQ-RGYDQVVHDVDLQKLP---VRFAMDRAGLVGA 572 (654)
Q Consensus 510 id~GIaE~~mvg~AaGlA~~----G-------~~Pi~~t-fa~F-l~-ra~dQI~~~~a~~~lp---V~~v~~~~G~~g~ 572 (654)
++.+..++. +.+|.|+|+. | ..+++.+ -..| -+ .+++. +|.++..++| +++++..-++ |-
T Consensus 318 ~~~shlg~~-~p~A~G~A~A~~~~~~~~~~~~~~vv~v~GDGa~a~qG~~~Ea-ln~A~~~~lp~gg~I~vv~nN~~-~i 394 (933)
T 2jgd_A 318 FNPSHLEIV-SPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQET-LNMSKARGYEVGGTVRIVINNQV-GF 394 (933)
T ss_dssp CCCSSTTCH-HHHHHHHHHHHHTTSSSCCGGGEEEEEEEEHHHHHHCTHHHHH-HHHTTSTTTCCSCCEEEEEECC----
T ss_pred ccCcccccc-cCHHHHHHHHHHhhccccCCCCeEEEEEECCcccccCCHHHHH-HHHhhccCCCCCceEEEEEeCCc-cc
Confidence 455555554 6677777764 2 2455555 6777 33 44555 5888899999 8887755543 22
Q ss_pred CC-CCC-----CChhhHHHHhcCCCCEEEecCCHHHHHHHHHHHHh---CCCCcEEEEe
Q 006251 573 DG-PTH-----CGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAV---IDDRPSCFRF 622 (654)
Q Consensus 573 dG-~tH-----q~~edla~~r~iPnl~V~~PsD~~E~~~ll~~al~---~~~~P~~ir~ 622 (654)
.+ ++. ..+.+++-.-.+|.+.| ---|+.++..+++.|.+ ..++|++|-.
T Consensus 395 st~~~~~~~~~~~~~~~a~a~g~p~~~V-dG~D~~av~~a~~~A~e~~r~~~~P~lIe~ 452 (933)
T 2jgd_A 395 TTSNPLDARSTPYCTDIGKMVQAPIFHV-NADDPEAVAFVTRLALDFRNTFKRDVFIDL 452 (933)
T ss_dssp ------------CGGGGGGTTTCCEEEE-ETTCHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred cCCCHHhcccchhHHHHHHHcCCCEEEE-CCCCHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 23 222 12445544455665555 56677778888887753 3468988754
Done!