BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006253
(653 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 388 bits (997), Expect = e-108, Method: Compositional matrix adjust.
Identities = 243/660 (36%), Positives = 373/660 (56%), Gaps = 32/660 (4%)
Query: 4 EVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLIL 63
E+ IL S D + A++ L++ +NLP FL+ L+ L N +R AGL +
Sbjct: 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQI 61
Query: 64 KNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIE 123
KN+L +K+ K + QRWL++D++ + ++K+++L+TL + + S+ASQ VA +A E
Sbjct: 62 KNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAE 120
Query: 124 LPHKQWPELIGALLSNIHQ--LPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQ 181
+P QWPELI L++N+ H K++TLE +GYIC+++ + + QD N+ILTA++Q
Sbjct: 121 IPVSQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQL-QDKSNEILTAIIQ 179
Query: 182 GMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFE 241
GM E +N+V+LAAT AL N+L F +ANF + ER +IM+VVCEAT P+ ++R AA +
Sbjct: 180 GMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQ 239
Query: 242 CLVAISSTYYEKLAPYIQD-IFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEY-- 298
LV I S YY+ + Y+ +F IT +A++ D + VALQ IEFWS+VCDEE+D+ E
Sbjct: 240 NLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASE 299
Query: 299 GGDFSGDSDIPCFYFIKHAXXXXXXXXXXXXXXXXXXXXXXXGAWNIAMAGGTCLGLVAR 358
+ + ++ K A WN A G CL L++
Sbjct: 300 AAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDD--DWNPCKAAGVCLMLLST 357
Query: 359 TVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTAL 418
DDIVP V+PF++E+I +WR R+AA AFGSILEGP P +L PLV A+ L L
Sbjct: 358 CCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGSILEGPEPNQLKPLVIQAMP-TLIEL 416
Query: 419 MQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKAC 478
M+DP+ V+DTTAWT+GR+ E L + IN ++ L++ + P VA C
Sbjct: 417 MKDPSVVVRDTTAWTVGRICELLPEAA-----INDVYLAPLLQCLIEGLSAEPRVASNVC 471
Query: 479 GALYFLAQG-------FEDAISPSS-PLTPFFQEIVQALLTVTHREDAGESRLRTAAYET 530
A LA+ +D P++ L+ F+ IVQ LL T R D ++ LR++AYE+
Sbjct: 472 WAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYES 531
Query: 531 LNEVVRCSTDETAPMVMQLVPLIMMELHQTL--EAQKLSSDEREKQNEIQGLLCGCLQVI 588
L E+V+ S + P V + +IM L Q L E+ S+ +R + N++Q LLC LQ +
Sbjct: 532 LMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNV 591
Query: 589 IQKLGSSEQTKYVFMQYADQMMGLFLRVF--AIRSATAHEEAMLAIGALAYATGLWRIRY 646
++K+ + +Q +D +M LR+F S E+A++A+ L G ++Y
Sbjct: 592 LRKVQHQDA-----LQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKY 646
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 386 bits (991), Expect = e-107, Method: Compositional matrix adjust.
Identities = 242/660 (36%), Positives = 371/660 (56%), Gaps = 32/660 (4%)
Query: 4 EVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLIL 63
E+ IL S D + A++ L++ +NLP FL+ L+ L N +R AGL +
Sbjct: 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQI 61
Query: 64 KNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIE 123
KN+L +K+ K + QRWL++D++ + ++K+++L+TL + + S+ASQ VA +A E
Sbjct: 62 KNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAE 120
Query: 124 LPHKQWPELIGALLSNIHQ--LPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQ 181
+P QWPELI L++N+ H K++TLE +GYIC+++ + + QD N+ILTA++Q
Sbjct: 121 IPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQL-QDKSNEILTAIIQ 179
Query: 182 GMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFE 241
GM E +N+V+LAAT AL N+L F +ANF + ER +IM+VVCEAT P+ ++R AA +
Sbjct: 180 GMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQ 239
Query: 242 CLVAISSTYYEKLAPYIQD-IFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEY-- 298
LV I S YY+ + Y+ +F IT +A++ D + VALQ IEFWS+VCDEE+D+ E
Sbjct: 240 NLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASE 299
Query: 299 GGDFSGDSDIPCFYFIKHAXXXXXXXXXXXXXXXXXXXXXXXGAWNIAMAGGTCLGLVAR 358
+ + ++ K A WN A G CL L+A
Sbjct: 300 AAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDD--DWNPCKAAGVCLMLLAT 357
Query: 359 TVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTAL 418
DDIVP V+PF++E+I +WR R+AA AFG ILEGP P +L PLV A+ L L
Sbjct: 358 CCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMP-TLIEL 416
Query: 419 MQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKAC 478
M+DP+ V+DT AWT+GR+ E L + IN ++ L++ + P VA C
Sbjct: 417 MKDPSVVVRDTAAWTVGRICELLPEAA-----INDVYLAPLLQCLIEGLSAEPRVASNVC 471
Query: 479 GALYFLAQG-------FEDAISPSS-PLTPFFQEIVQALLTVTHREDAGESRLRTAAYET 530
A LA+ +D P++ L+ F+ IVQ LL T R D ++ LR++AYE+
Sbjct: 472 WAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYES 531
Query: 531 LNEVVRCSTDETAPMVMQLVPLIMMELHQTL--EAQKLSSDEREKQNEIQGLLCGCLQVI 588
L E+V+ S + P V + +IM L Q L E+ S+ +R + N++Q LLC LQ +
Sbjct: 532 LMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNV 591
Query: 589 IQKLGSSEQTKYVFMQYADQMMGLFLRVF--AIRSATAHEEAMLAIGALAYATGLWRIRY 646
++K+ + +Q +D +M LR+F S E+A++A+ L G ++Y
Sbjct: 592 LRKVQHQDA-----LQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKY 646
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 385 bits (990), Expect = e-107, Method: Compositional matrix adjust.
Identities = 242/660 (36%), Positives = 370/660 (56%), Gaps = 32/660 (4%)
Query: 4 EVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLIL 63
E+ IL S D + A++ L++ +NLP FL+ L+ L N +R AGL +
Sbjct: 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQI 61
Query: 64 KNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIE 123
KN+L +K+ K + QRWL++D++ + ++K+++L TL + + S+ASQ VA +A E
Sbjct: 62 KNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAE 120
Query: 124 LPHKQWPELIGALLSNIHQ--LPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQ 181
+P QWPELI L++N+ H K++TLE +GYIC+++ + + QD N+ILTA++Q
Sbjct: 121 IPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQL-QDKSNEILTAIIQ 179
Query: 182 GMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFE 241
GM E +N+V+LAAT AL N+L F +ANF + ER +IM+VVCEAT P+ ++R AA +
Sbjct: 180 GMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQ 239
Query: 242 CLVAISSTYYEKLAPYIQD-IFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEY-- 298
LV I S YY+ + Y+ +F IT +A++ D + VALQ IEFWS+VCDEE+D+ E
Sbjct: 240 NLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASE 299
Query: 299 GGDFSGDSDIPCFYFIKHAXXXXXXXXXXXXXXXXXXXXXXXGAWNIAMAGGTCLGLVAR 358
+ + ++ K A WN A G CL L+A
Sbjct: 300 AAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDD--DWNPCKAAGVCLMLLAT 357
Query: 359 TVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTAL 418
DDIVP V+PF++E+I +WR R+AA AFG ILEGP P +L PLV A+ L L
Sbjct: 358 CCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMP-TLIEL 416
Query: 419 MQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKAC 478
M+DP+ V+DT AWT+GR+ E L + IN ++ L++ + P VA C
Sbjct: 417 MKDPSVVVRDTAAWTVGRICELLPEAA-----INDVYLAPLLQCLIEGLSAEPRVASNVC 471
Query: 479 GALYFLAQG-------FEDAISPSS-PLTPFFQEIVQALLTVTHREDAGESRLRTAAYET 530
A LA+ +D P++ L+ F+ IVQ LL T R D ++ LR++AYE+
Sbjct: 472 WAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYES 531
Query: 531 LNEVVRCSTDETAPMVMQLVPLIMMELHQTL--EAQKLSSDEREKQNEIQGLLCGCLQVI 588
L E+V+ S + P V + +IM L Q L E+ S+ +R + N++Q LLC LQ +
Sbjct: 532 LMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNV 591
Query: 589 IQKLGSSEQTKYVFMQYADQMMGLFLRVF--AIRSATAHEEAMLAIGALAYATGLWRIRY 646
++K+ + +Q +D +M LR+F S E+A++A+ L G ++Y
Sbjct: 592 LRKVQHQDA-----LQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKY 646
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B
Bound To The Non-Classical Nls(67-94) Of Pthrp
Length = 485
Score = 323 bits (827), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 191/493 (38%), Positives = 285/493 (57%), Gaps = 15/493 (3%)
Query: 4 EVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLIL 63
E+ IL S D + A++ L++ +NLP FL+ L+ L N +R AGL +
Sbjct: 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQI 61
Query: 64 KNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIE 123
KN+L +K+ K + QRWL++D++ + ++K+++L+TL + + S+ASQ VA +A E
Sbjct: 62 KNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAE 120
Query: 124 LPHKQWPELIGALLSNIHQL--PPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQ 181
+P QWPELI L++N+ H K++TLE +GYIC+++ + + QD N+ILTA++Q
Sbjct: 121 IPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQL-QDKSNEILTAIIQ 179
Query: 182 GMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFE 241
GM E +N+V+LAAT AL N+L F +ANF + ER +IM+VVCEAT P+ ++R AA +
Sbjct: 180 GMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQ 239
Query: 242 CLVAISSTYYEKLAPYIQD-IFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEY-- 298
LV I S YY+ + Y+ +F IT +A++ D + VALQ IEFWS+VCDEE+D+ E
Sbjct: 240 NLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASE 299
Query: 299 GGDFSGDSDIPCFYFIKHAXXXXXXXXXXXXXXXXXXXXXXXGAWNIAMAGGTCLGLVAR 358
+ + ++ K A WN A G CL L+A
Sbjct: 300 AAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDD--DWNPCKAAGVCLMLLAT 357
Query: 359 TVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTAL 418
DDIVP V+PF++E+I +WR R+AA AFG ILEGP P +L PLV A+ L L
Sbjct: 358 CCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMP-TLIEL 416
Query: 419 MQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKAC 478
M+DP+ V+DT AWT+GR+ E L + IN ++ L++ + P VA C
Sbjct: 417 MKDPSVVVRDTAAWTVGRICELLPEAA-----INDVYLAPLLQCLIEGLSAEPRVASNVC 471
Query: 479 GALYFLAQGFEDA 491
A LA+ +A
Sbjct: 472 WAFSSLAEAAYEA 484
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 315 bits (808), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 198/534 (37%), Positives = 296/534 (55%), Gaps = 31/534 (5%)
Query: 130 PELIGALLSNIHQ--LPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASE 187
PELI L++N+ H K++TLE +GYIC+++ + + QD N+ILTA++QGM E
Sbjct: 2 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQL-QDKSNEILTAIIQGMRKEE 60
Query: 188 SNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAIS 247
+N+V+LAAT AL N+L F +ANF + ER +IM+VVCEAT P+ ++R AA + LV I
Sbjct: 61 PSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIM 120
Query: 248 STYYEKLAPYIQD-IFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEY--GGDFSG 304
S YY+ + Y+ +F IT +A++ D + VALQ IEFWS+VCDEE+D+ E +
Sbjct: 121 SLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGR 180
Query: 305 DSDIPCFYFIKHAXXXXXXXXXXXXXXXXXXXXXXXGAWNIAMAGGTCLGLVARTVGDDI 364
+ ++ K A WN A G CL L+A DDI
Sbjct: 181 PPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDD--DWNPCKAAGVCLMLLATCCEDDI 238
Query: 365 VPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNN 424
VP V+PF++E+I +WR R+AA AFG ILEGP P +L PLV A+ L LM+DP+
Sbjct: 239 VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMP-TLIELMKDPSV 297
Query: 425 HVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFL 484
V+DT AWT+GR+ E L + IN ++ L++ + P VA C A L
Sbjct: 298 VVRDTAAWTVGRICELLPEAA-----INDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSL 352
Query: 485 AQG-------FEDAISPSS-PLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVR 536
A+ +D P++ L+ F+ IVQ LL T R D ++ LR++AYE+L E+V+
Sbjct: 353 AEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVK 412
Query: 537 CSTDETAPMVMQLVPLIMMELHQTL--EAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGS 594
S + P V + +IM L Q L E+ S+ +R + N++Q LLC LQ +++K+
Sbjct: 413 NSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQH 472
Query: 595 SEQTKYVFMQYADQMMGLFLRVF--AIRSATAHEEAMLAIGALAYATGLWRIRY 646
+ +Q +D +M LR+F S E+A++A+ L G ++Y
Sbjct: 473 QDA-----LQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKY 521
>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta
pdb|1IBR|B Chain B, Complex Of Ran With Importin Beta
Length = 462
Score = 315 bits (806), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 180/443 (40%), Positives = 266/443 (60%), Gaps = 10/443 (2%)
Query: 4 EVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLIL 63
E+ IL S D + A++ L++ +NLP FL+ L+ L N +R AGL +
Sbjct: 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQI 61
Query: 64 KNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIE 123
KN+L +K+ K + QRWL++D++ + ++K+++L+TL + + S+ASQ VA +A E
Sbjct: 62 KNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAE 120
Query: 124 LPHKQWPELIGALLSNIHQL--PPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQ 181
+P QWPELI L++N+ H K++TLE +GYIC+++ + + QD N+ILTA++Q
Sbjct: 121 IPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQL-QDKSNEILTAIIQ 179
Query: 182 GMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFE 241
GM E +N+V+LAAT AL N+L F +ANF + ER +IM+VVCEAT P+ ++R AA +
Sbjct: 180 GMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQ 239
Query: 242 CLVAISSTYYEKLAPYIQD-IFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEY-- 298
LV I S YY+ + Y+ +F IT +A++ D + VALQ IEFWS+VCDEE+D+ E
Sbjct: 240 NLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASE 299
Query: 299 GGDFSGDSDIPCFYFIKHAXXXXXXXXXXXXXXXXXXXXXXXGAWNIAMAGGTCLGLVAR 358
+ + ++ K A WN A G CL L+A
Sbjct: 300 AAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDD--DWNPCKAAGVCLMLLAT 357
Query: 359 TVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTAL 418
DDIVP V+PF++E+I +WR R+AA AFG ILEGP P +L PLV A+ L L
Sbjct: 358 CCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMP-TLIEL 416
Query: 419 MQDPNNHVKDTTAWTLGRMFEFL 441
M+DP+ V+DT AWT+GR+ E L
Sbjct: 417 MKDPSVVVRDTAAWTVGRICELL 439
>pdb|1F59|A Chain A, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1F59|B Chain B, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1O6P|A Chain A, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6P|B Chain B, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6O|A Chain A, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|B Chain B, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|C Chain C, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
Length = 442
Score = 313 bits (803), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 180/443 (40%), Positives = 265/443 (59%), Gaps = 10/443 (2%)
Query: 4 EVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLIL 63
E+ IL S D + A++ L++ +NLP FL+ L+ L N +R AGL +
Sbjct: 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQI 61
Query: 64 KNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIE 123
KN+L +K+ K + QRWL++D++ + ++K+++L TL + + S+ASQ VA +A E
Sbjct: 62 KNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAE 120
Query: 124 LPHKQWPELIGALLSNIHQL--PPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQ 181
+P QWPELI L++N+ H K++TLE +GYIC+++ + + QD N+ILTA++Q
Sbjct: 121 IPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQL-QDKSNEILTAIIQ 179
Query: 182 GMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFE 241
GM E +N+V+LAAT AL N+L F +ANF + ER +IM+VVCEAT P+ ++R AA +
Sbjct: 180 GMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQ 239
Query: 242 CLVAISSTYYEKLAPYIQD-IFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEY-- 298
LV I S YY+ + Y+ +F IT +A++ D + VALQ IEFWS+VCDEE+D+ E
Sbjct: 240 NLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASE 299
Query: 299 GGDFSGDSDIPCFYFIKHAXXXXXXXXXXXXXXXXXXXXXXXGAWNIAMAGGTCLGLVAR 358
+ + ++ K A WN A G CL L+A
Sbjct: 300 AAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDD--DWNPCKAAGVCLMLLAT 357
Query: 359 TVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTAL 418
DDIVP V+PF++E+I +WR R+AA AFG ILEGP P +L PLV A+ L L
Sbjct: 358 CCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMP-TLIEL 416
Query: 419 MQDPNNHVKDTTAWTLGRMFEFL 441
M+DP+ V+DT AWT+GR+ E L
Sbjct: 417 MKDPSVVVRDTAAWTVGRICELL 439
>pdb|1GCJ|A Chain A, N-Terminal Fragment Of Importin-Beta
pdb|1GCJ|B Chain B, N-Terminal Fragment Of Importin-Beta
Length = 460
Score = 306 bits (783), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 178/443 (40%), Positives = 260/443 (58%), Gaps = 10/443 (2%)
Query: 4 EVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLIL 63
E+ IL S D + A++ L++ +NLP FL+ L+ L N +R AGL +
Sbjct: 8 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQI 67
Query: 64 KNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIE 123
KN+L +K+ K + QRWL++D++ + ++K+++L+TL + + S+ASQ VA +A E
Sbjct: 68 KNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAE 126
Query: 124 LPHKQWPELIGALLSNIHQL--PPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQ 181
+P QWPELI L++N+ H K++TLE +GYIC+++ + + QD N+ILTA++Q
Sbjct: 127 IPVSQWPELIPQLVANVTNPNSTEHXKESTLEAIGYICQDIDPEQL-QDKSNEILTAIIQ 185
Query: 182 GMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFE 241
G E +N+V+LAAT AL N+L F +ANF + ER +I +VVCEAT P+ ++R AA +
Sbjct: 186 GXRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIXQVVCEATQCPDTRVRVAALQ 245
Query: 242 CLVAISSTYYEKLAPYIQD-IFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEY-- 298
LV I S YY+ Y +F IT +A + D + VALQ IEFWS+VCDEE D+ E
Sbjct: 246 NLVKIXSLYYQYXETYXGPALFAITIEAXKSDIDEVALQGIEFWSNVCDEEXDLAIEASE 305
Query: 299 GGDFSGDSDIPCFYFIKHAXXXXXXXXXXXXXXXXXXXXXXXGAWNIAMAGGTCLGLVAR 358
+ + ++ K A WN A G CL L++
Sbjct: 306 AAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDD--DWNPCKAAGVCLXLLST 363
Query: 359 TVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTAL 418
DDIVP V+PF++E+I +WR R+AA AFGSILEGP P +L PLV I L L
Sbjct: 364 CCEDDIVPHVLPFIKEHIKNPDWRYRDAAVXAFGSILEGPEPNQLKPLV-IQAXPTLIEL 422
Query: 419 MQDPNNHVKDTTAWTLGRMFEFL 441
+DP+ V+DTTAWT+GR+ E L
Sbjct: 423 XKDPSVVVRDTTAWTVGRICELL 445
>pdb|2BPT|A Chain A, Structure Of The Nup1p:kap95p Complex
pdb|2BKU|B Chain B, Kap95p:rangtp Complex
pdb|2BKU|D Chain D, Kap95p:rangtp Complex
pdb|3EA5|B Chain B, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|D Chain D, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 861
Score = 291 bits (744), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 215/660 (32%), Positives = 338/660 (51%), Gaps = 53/660 (8%)
Query: 2 SAEVTQILLNA-QSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAG 60
+AE Q+L N+ S D +R +E LK+ N F + L+++ +E R LA
Sbjct: 3 TAEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAA 62
Query: 61 LILKNALDAKEQHRKFELVQRWLS-LDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKV 119
L LKN L +K+ + + QRW++ + K QIK+ L L S + A+Q++A +
Sbjct: 63 LTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAI 122
Query: 120 AGIELPHKQWPELIGALLSNI-HQLPPHTKQATLETLGYICEEVSSDAVEQDHV---NKI 175
A IELPH WPEL+ ++ N + P + K+A+L LGY+CE S+D Q V N I
Sbjct: 123 ADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCE--SADPQSQALVSSSNNI 180
Query: 176 LTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKI 235
L A+VQG ++E++ VRLAA AL ++L F + N + ER+Y+M+VVCEAT + ++++
Sbjct: 181 LIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEV 240
Query: 236 RQAAFECLVAISSTYYEKLAPYI-QDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDI 294
+ AAF CL I S YY + PY+ Q ++ +T ++ + VA +EFWS++C+EEIDI
Sbjct: 241 QAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDI 300
Query: 295 -----------LEEYGGDFSGDSDIPCFYFIKHAXXXXXXXXXXXXXXXXXXXXXXXGAW 343
L+ Y S D+ W
Sbjct: 301 AYELAQFPQSPLQSYNFALSSIKDV---------------VPNLLNLLTRQNEDPEDDDW 345
Query: 344 NIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKL 403
N++M+ G CL L A+ G+ I+ V+ FVE+NIT WR REAA AFGSI++GP +
Sbjct: 346 NVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQR 405
Query: 404 VPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVL 463
V+ AL +L LM D + VK+TTAW +GR+ ++ I Q + ++
Sbjct: 406 TYYVHQALPSILN-LMNDQSLQVKETTAWCIGRI-----ADSVAESIDPQQHLPGVVQAC 459
Query: 464 LQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRL 523
L ++D P VA + L + +A +P SP+ F+ +V L+ +R D E
Sbjct: 460 LIGLQDHPKVATNCSWTIINLVEQLAEA-TP-SPIYNFYPALVDGLIGAANRID-NEFNA 516
Query: 524 RTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTL--EAQKLSSDEREKQNEIQGLL 581
R +A+ L +V +TD A + +M +L QT+ + +L+ ++ + E+Q +
Sbjct: 517 RASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNI 576
Query: 582 CGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIR-SATAHEEAMLAIGALAYATG 640
L +I+K SS + AD +MGLF R+ + SA ++ AI ALA + G
Sbjct: 577 LTVLAAVIRKSPSSVEP------VADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLG 630
>pdb|3ND2|A Chain A, Structure Of Yeast Importin-Beta (Kap95p)
Length = 861
Score = 291 bits (744), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 215/660 (32%), Positives = 338/660 (51%), Gaps = 53/660 (8%)
Query: 2 SAEVTQILLNA-QSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAG 60
+AE Q+L N+ S D +R +E LK+ N F + L+++ +E R LA
Sbjct: 3 TAEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAA 62
Query: 61 LILKNALDAKEQHRKFELVQRWLS-LDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKV 119
L LKN L +K+ + + QRW++ + K QIK+ L L S + A+Q++A +
Sbjct: 63 LTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAI 122
Query: 120 AGIELPHKQWPELIGALLSNI-HQLPPHTKQATLETLGYICEEVSSDAVEQDHV---NKI 175
A IELPH WPEL+ ++ N + P + K+A+L LGY+CE S+D Q V N I
Sbjct: 123 ADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCE--SADPQSQALVSSSNNI 180
Query: 176 LTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKI 235
L A+VQG ++E++ VRLAA AL ++L F + N + ER+Y+M+VVCEAT + ++++
Sbjct: 181 LIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEV 240
Query: 236 RQAAFECLVAISSTYYEKLAPYI-QDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDI 294
+ AAF CL I S YY + PY+ Q ++ +T ++ + VA +EFWS++C+EEIDI
Sbjct: 241 QAAAFGCLCKIMSLYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDI 300
Query: 295 -----------LEEYGGDFSGDSDIPCFYFIKHAXXXXXXXXXXXXXXXXXXXXXXXGAW 343
L+ Y S D+ W
Sbjct: 301 AYELAQFPQSPLQSYNFALSSIKDV---------------VPNLLNLLTRQNEDPEDDDW 345
Query: 344 NIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKL 403
N++M+ G CL L A+ G+ I+ V+ FVE+NIT WR REAA AFGSI++GP +
Sbjct: 346 NVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQR 405
Query: 404 VPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVL 463
V+ AL +L LM D + VK+TTAW +GR+ ++ I Q + ++
Sbjct: 406 TYYVHQALPSILN-LMNDQSLQVKETTAWCIGRI-----ADSVAESIDPQQHLPGVVQAC 459
Query: 464 LQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRL 523
L ++D P VA + L + +A +P SP+ F+ +V L+ +R D E
Sbjct: 460 LIGLQDHPKVATNCSWTIINLVEQLAEA-TP-SPIYNFYPALVDGLIGAANRID-NEFNA 516
Query: 524 RTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTL--EAQKLSSDEREKQNEIQGLL 581
R +A+ L +V +TD A + +M +L QT+ + +L+ ++ + E+Q +
Sbjct: 517 RASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNI 576
Query: 582 CGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIR-SATAHEEAMLAIGALAYATG 640
L +I+K SS + AD +MGLF R+ + SA ++ AI ALA + G
Sbjct: 577 LTVLAAVIRKSPSSVEP------VADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLG 630
>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls
pdb|2H4M|B Chain B, Karyopherin Beta2TRANSPORTIN-M9nls
Length = 865
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 118/561 (21%), Positives = 233/561 (41%), Gaps = 56/561 (9%)
Query: 12 AQSVDGTVRKQAEESLKQY-QEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAK 70
+QS D T+++ ++ L+Q Q + +L+ + +L ++++P +R L+GLILKN + A
Sbjct: 22 SQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEP--TRSLSGLILKNNVKAH 79
Query: 71 EQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGI-ELPHKQW 129
Q + + V IKS L + + R+T ++ +A EL + W
Sbjct: 80 FQ-----------NFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGEL--QNW 126
Query: 130 PELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGM--NASE 187
P+L+ L S + +T + L ICE+ S++ ++ D +++ L ++
Sbjct: 127 PDLLPKLCSLLDSEDYNTCEGAFGALQKICED-SAEILDSDVLDRPLNIMIPKFLQFFKH 185
Query: 188 SNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAIS 247
S+ +R A A N ++ + + D + + E ++R+ LV +
Sbjct: 186 SSPKIRSHAV-ACVNQFIISRTQ-ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLL 243
Query: 248 STYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEI--DILEEY------- 298
++L P++ +I + ++ +E VAL+A EFW ++ ++ I D+L +
Sbjct: 244 EVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPV 303
Query: 299 ---GGDFSGDSDIPCFYFIKHAXXXXXXXXXXXXXXXXXXXXXXXGAWNIAMAGGTCLGL 355
G + SDI WN+ L +
Sbjct: 304 LVNGMKY---SDIDIILLKGDVEEDETIPDSEQDIGGSGGSGDTISDWNLRKCSAAALDV 360
Query: 356 VARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFML 415
+A D+++P ++P ++E + EW +E+ G+I EG + ++P + + ++
Sbjct: 361 LANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEG-CMQGMIPYLPELIPHLI 419
Query: 416 TALMQDPNNHVKDTTAWTLGRMFEFLHGSTLET---PIINQGNCQQIISVLLQSMKDVPN 472
L D V+ T WTL R ++ +T P++ +++ +L S K
Sbjct: 420 QCL-SDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMT-----ELLKRILDSNK---R 470
Query: 473 VAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLN 532
V E AC A L + + L P+ I+ L+ + + A TL
Sbjct: 471 VQEAACSAFATLEE------EACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLA 524
Query: 533 EVVRCSTDETAPMVMQLVPLI 553
+ V ++ + M + PLI
Sbjct: 525 DSVGHHLNKPEYIQMLMPPLI 545
>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|2OT8|B Chain B, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|4FDD|A Chain A, Crystal Structure Of Kap Beta2-Py-Nls
pdb|4H1K|A Chain A, Crystal Structure Of Human Kap-Beta2 Bound To The Nls Of
Saccharomyces Cerevisiae Nab2
Length = 852
Score = 85.5 bits (210), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 117/558 (20%), Positives = 232/558 (41%), Gaps = 63/558 (11%)
Query: 12 AQSVDGTVRKQAEESLKQY-QEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAK 70
+QS D T+++ ++ L+Q Q + +L+ + +L ++++P +R L+GLILKN + A
Sbjct: 22 SQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEP--TRSLSGLILKNNVKAH 79
Query: 71 EQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGI-ELPHKQW 129
Q + + V IKS L + + R+T ++ +A EL + W
Sbjct: 80 FQ-----------NFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGEL--QNW 126
Query: 130 PELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGM--NASE 187
P+L+ L S + +T + L ICE+ S++ ++ D +++ L ++
Sbjct: 127 PDLLPKLCSLLDSEDYNTCEGAFGALQKICED-SAEILDSDVLDRPLNIMIPKFLQFFKH 185
Query: 188 SNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAIS 247
S+ +R A A N ++ + + D + + E ++R+ LV +
Sbjct: 186 SSPKIRSHAV-ACVNQFIISRTQ-ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLL 243
Query: 248 STYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEI--DILEEY------- 298
++L P++ +I + ++ +E VAL+A EFW ++ ++ I D+L +
Sbjct: 244 EVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPV 303
Query: 299 --GGDFSGDSDIPCFYFIKHAXXXXXXXXXXXXXXXXXXXXXXXGAWNIAMAGGTCLGLV 356
G D DI WN+ L ++
Sbjct: 304 LVNGMKYSDIDI---------------ILLKGDVEGGSGGDDTISDWNLRKCSAAALDVL 348
Query: 357 ARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLT 416
A D+++P ++P ++E + EW +E+ G+I EG + ++P + + ++
Sbjct: 349 ANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEG-CMQGMIPYLPELIPHLIQ 407
Query: 417 ALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDV-PNVAE 475
L D V+ T WTL R ++ +T + + +++ LL+ + D V E
Sbjct: 408 CL-SDKKALVRSITCWTLSRYAHWVVSQPPDTYL------KPLMTELLKRILDSNKRVQE 460
Query: 476 KACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVV 535
AC A L + + L P+ I+ L+ + + A TL + V
Sbjct: 461 AACSAFATLEE------EACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSV 514
Query: 536 RCSTDETAPMVMQLVPLI 553
++ + M + PLI
Sbjct: 515 GHHLNKPEYIQMLMPPLI 532
>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|B Chain B, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|C Chain C, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|D Chain D, Karyopherin Beta2TRANSPORTIN
pdb|2Z5J|A Chain A, Free Transportin 1
pdb|2Z5K|A Chain A, Complex Of Transportin 1 With Tap Nls
pdb|2Z5M|A Chain A, Complex Of Transportin 1 With Tap Nls, Crystal Form 2
pdb|2Z5N|A Chain A, Complex Of Transportin 1 With Hnrnp D Nls
pdb|2Z5O|A Chain A, Complex Of Transportin 1 With Jktbp Nls
Length = 890
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 120/583 (20%), Positives = 236/583 (40%), Gaps = 75/583 (12%)
Query: 12 AQSVDGTVRKQAEESLKQY-QEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAK 70
+QS D T+++ ++ L+Q Q + +L+ + +L ++++P +R L+GLILKN + A
Sbjct: 22 SQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEP--TRSLSGLILKNNVKAH 79
Query: 71 EQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGI-ELPHKQW 129
Q + + V IKS L + + R+T ++ +A EL + W
Sbjct: 80 FQ-----------NFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGEL--QNW 126
Query: 130 PELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNA--SE 187
P+L+ L S + +T + L ICE+ S++ ++ D +++ L ++
Sbjct: 127 PDLLPKLCSLLDSEDYNTCEGAFGALQKICED-SAEILDSDVLDRPLNIMIPKFLQFFKH 185
Query: 188 SNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAIS 247
S+ +R A A N ++ + + D + + E ++R+ LV +
Sbjct: 186 SSPKIRSHAV-ACVNQFIISRTQ-ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLL 243
Query: 248 STYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEI--DILEEY------- 298
++L P++ +I + ++ +E VAL+A EFW ++ ++ I D+L +
Sbjct: 244 EVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPV 303
Query: 299 ---------------GGDFSGDSDI--------PCFYFIKHAXXX--XXXXXXXXXXXXX 333
GD D I P F+ +
Sbjct: 304 LVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDE 363
Query: 334 XXXXXXXGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGS 393
WN+ L ++A D+++P ++P ++E + EW +E+ G+
Sbjct: 364 IDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGA 423
Query: 394 ILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLET---PI 450
I EG + ++P + + ++ L D V+ T WTL R ++ +T P+
Sbjct: 424 IAEG-CMQGMIPYLPELIPHLIQCL-SDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPL 481
Query: 451 INQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALL 510
+ +++ +L S K V E AC A L + + L P+ I+ L+
Sbjct: 482 MT-----ELLKRILDSNK---RVQEAACSAFATLEE------EACTELVPYLAYILDTLV 527
Query: 511 TVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLI 553
+ + A TL + V ++ + M + PLI
Sbjct: 528 FAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLI 570
>pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 890
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 114/544 (20%), Positives = 214/544 (39%), Gaps = 83/544 (15%)
Query: 12 AQSVDGTVRKQAEESLKQY-QEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAK 70
+QS D T+++ ++ L+Q Q + +L+ + +L ++++P +R L+GLILKN + A
Sbjct: 22 SQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEP--TRSLSGLILKNNVKAH 79
Query: 71 EQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGI-ELPHKQW 129
Q + + V IKS L + + R+T ++ +A EL + W
Sbjct: 80 FQ-----------NFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGEL--QNW 126
Query: 130 PELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNA--SE 187
P+L+ L S + +T + L ICE+ S++ ++ D +++ L +
Sbjct: 127 PDLLPKLCSLLDSEDYNTCEGAFGALQKICED-SAEILDSDVLDRPLNIXIPKFLQFFKH 185
Query: 188 SNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAIS 247
S+ +R A A N ++ + + D + E ++R+ LV +
Sbjct: 186 SSPKIRSHAV-ACVNQFIISRTQ-ALXLHIDSFTENLFALAGDEEPEVRKNVCRALVXLL 243
Query: 248 STYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFW-----SSVCDE------------ 290
++L P+ +I + ++ +E VAL+A EFW +C +
Sbjct: 244 EVRMDRLLPHXHNIVEYXLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPV 303
Query: 291 --------EIDILEEYGGDFSGDSDIP--------CFYFIKHAXXXXXXXXXXXXXXXXX 334
+IDI+ GD D IP F+ +
Sbjct: 304 LVNGXKYSDIDIIL-LKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDD 362
Query: 335 XXXX--XXGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFG 392
WN+ L ++A D+++P ++P ++E + EW +E+ G
Sbjct: 363 EIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLG 422
Query: 393 SILEG------PSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTL 446
+I EG P +L+P L + D V+ T WTL R ++
Sbjct: 423 AIAEGCXQGXIPYLPELIP--------HLIQCLSDKKALVRSITCWTLSRYAHWVVSQPP 474
Query: 447 ETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIV 506
+T + + +++ +L S K V E AC A L + + L P+ I+
Sbjct: 475 DTYL--KPLXTELLKRILDSNK---RVQEAACSAFATLEE------EACTELVPYLAYIL 523
Query: 507 QALL 510
L+
Sbjct: 524 DTLV 527
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 10/133 (7%)
Query: 387 ATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTL 446
+ +A +I G S E+ +V+ +L+ P+ H+ + W LG + GS
Sbjct: 105 SAWALTNIASGTS-EQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAG--DGSAF 161
Query: 447 ETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPF--FQE 504
+I G ++++L VP+++ ACG L L + +P P ++
Sbjct: 162 RDLVIKHGAIDPLLALLA-----VPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQ 216
Query: 505 IVQALLTVTHRED 517
I+ L+ + H D
Sbjct: 217 ILPTLVRLLHHND 229
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 9/103 (8%)
Query: 417 ALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEK 476
+L+ P+ H+ + W LG + GS +I G ++++L VP+++
Sbjct: 99 SLLASPHAHISEQAVWALGNIAG--DGSAFRDLVIKHGAIDPLLALLA-----VPDLSTL 151
Query: 477 ACGALYFLAQGFEDAISPSSPLTPF--FQEIVQALLTVTHRED 517
ACG L L + +P P ++I+ L+ + H D
Sbjct: 152 ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND 194
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 9/103 (8%)
Query: 417 ALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEK 476
+L+ P+ H+ + W LG + GS +I G ++++L VP+++
Sbjct: 95 SLLASPHAHISEQAVWALGNIAG--DGSAFRDLVIKHGAIDPLLALLA-----VPDLSTL 147
Query: 477 ACGALYFLAQGFEDAISPSSPLTPF--FQEIVQALLTVTHRED 517
ACG L L + +P P ++I+ L+ + H D
Sbjct: 148 ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND 190
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 9/103 (8%)
Query: 417 ALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEK 476
+L+ P+ H+ + W LG + GS +I G ++++L VP+++
Sbjct: 99 SLLASPHAHISEQAVWALGNIAG--DGSAFRDLVIKHGAIDPLLALLA-----VPDLSTL 151
Query: 477 ACGALYFLAQGFEDAISPSSPLTPF--FQEIVQALLTVTHRED 517
ACG L L + +P P ++I+ L+ + H D
Sbjct: 152 ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND 194
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 9/103 (8%)
Query: 417 ALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEK 476
+L+ P+ H+ + W LG + GS +I G ++++L VP+++
Sbjct: 100 SLLASPHAHISEQAVWALGNIAG--DGSAFRDLVIKHGAIDPLLALLA-----VPDLSTL 152
Query: 477 ACGALYFLAQGFEDAISPSSPLTPF--FQEIVQALLTVTHRED 517
ACG L L + +P P ++I+ L+ + H D
Sbjct: 153 ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND 195
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 9/103 (8%)
Query: 417 ALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEK 476
+L+ P+ H+ + W LG + GS +I G ++++L VP+++
Sbjct: 95 SLLASPHAHISEQAVWALGNIAG--DGSAFRDLVIKHGAIDPLLALLA-----VPDLSTL 147
Query: 477 ACGALYFLAQGFEDAISPSSPLTPF--FQEIVQALLTVTHRED 517
ACG L L + +P P ++I+ L+ + H D
Sbjct: 148 ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND 190
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 9/103 (8%)
Query: 417 ALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEK 476
+L+ P+ H+ + W LG + GS +I G ++++L VP+++
Sbjct: 100 SLLASPHAHISEQAVWALGNIAG--DGSAFRDLVIKHGAIDPLLALLA-----VPDLSTL 152
Query: 477 ACGALYFLAQGFEDAISPSSPLTPF--FQEIVQALLTVTHRED 517
ACG L L + +P P ++I+ L+ + H D
Sbjct: 153 ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND 195
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 9/103 (8%)
Query: 417 ALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEK 476
+L+ P+ H+ + W LG + GS +I G ++++L VP+++
Sbjct: 126 SLLASPHAHISEQAVWALGNIAG--DGSAFRDLVIKHGAIDPLLALLA-----VPDLSTL 178
Query: 477 ACGALYFLAQGFEDAISPSSPLTPF--FQEIVQALLTVTHRED 517
ACG L L + +P P ++I+ L+ + H D
Sbjct: 179 ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND 221
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 9/103 (8%)
Query: 417 ALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEK 476
+L+ P+ H+ + W LG + GS +I G ++++L VP+++
Sbjct: 101 SLLASPHAHISEQAVWALGNIAG--DGSVFRDLVIKYGAVDPLLALLA-----VPDMSSL 153
Query: 477 ACGALYFLAQGFEDAISPSSPLTPF--FQEIVQALLTVTHRED 517
ACG L L + +P P ++I+ L+ + H +D
Sbjct: 154 ACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLLHHDD 196
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 10/133 (7%)
Query: 387 ATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTL 446
+ +A +I G S E+ +V+ +L+ P+ H+ + W LG + GS
Sbjct: 121 SAWALTNIASGTS-EQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAG--DGSAF 177
Query: 447 ETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPF--FQE 504
+I G ++++L VP+++ ACG L L + +P P ++
Sbjct: 178 RDLVIKHGAIDPLLALLA-----VPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQ 232
Query: 505 IVQALLTVTHRED 517
I+ L+ + H D
Sbjct: 233 ILPTLVRLLHHND 245
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 10/133 (7%)
Query: 387 ATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTL 446
+ +A +I G S E+ +V+ +L+ P+ H+ + W LG + GS
Sbjct: 121 SAWALTNIASGTS-EQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAG--DGSAF 177
Query: 447 ETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPF--FQE 504
+I G ++++L VP+++ ACG L L + +P P ++
Sbjct: 178 RDLVIKHGAIDPLLALLA-----VPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQ 232
Query: 505 IVQALLTVTHRED 517
I+ L+ + H D
Sbjct: 233 ILPTLVRLLHHND 245
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 10/133 (7%)
Query: 387 ATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTL 446
+ +A +I G S E+ +V+ +L+ P+ H+ + W LG + GS
Sbjct: 107 SAWALTNIASGTS-EQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAG--DGSAF 163
Query: 447 ETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPF--FQE 504
+I G ++++L VP+++ ACG L L + +P P ++
Sbjct: 164 RDLVIKHGAIDPLLALLA-----VPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQ 218
Query: 505 IVQALLTVTHRED 517
I+ L+ + H D
Sbjct: 219 ILPTLVRLLHHND 231
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 10/133 (7%)
Query: 387 ATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTL 446
+ +A +I G S E+ +V+ +L+ P+ H+ + W LG + GS
Sbjct: 121 SAWALTNIASGTS-EQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAG--DGSAF 177
Query: 447 ETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPF--FQE 504
+I G ++++L VP+++ ACG L L + +P P ++
Sbjct: 178 RDLVIKHGAIDPLLALLA-----VPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQ 232
Query: 505 IVQALLTVTHRED 517
I+ L+ + H D
Sbjct: 233 ILPTLVRLLHHND 245
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 9/103 (8%)
Query: 417 ALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEK 476
+L+ P+ H+ + W LG + GS +I G ++++L VP+++
Sbjct: 100 SLLASPHAHISEQAVWALGNIAG--DGSAFRDLVIKHGAIDPLLALLA-----VPDLSTL 152
Query: 477 ACGALYFLAQGFEDAISPSSPLTPF--FQEIVQALLTVTHRED 517
ACG L L + +P P ++I+ L+ + H D
Sbjct: 153 ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND 195
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 9/103 (8%)
Query: 417 ALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEK 476
+L+ P+ H+ + W LG + GS +I G ++++L VP+++
Sbjct: 106 SLLASPHAHISEQAVWALGNIAG--DGSAFRDLVIKHGAIDPLLALLA-----VPDLSTL 158
Query: 477 ACGALYFLAQGFEDAISPSSPLTPF--FQEIVQALLTVTHRED 517
ACG L L + +P P ++I+ L+ + H D
Sbjct: 159 ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND 201
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 10/133 (7%)
Query: 387 ATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTL 446
+ +A +I G S E+ +V+ +L+ P+ H+ + W LG + GS
Sbjct: 140 SAWALTNIASGTS-EQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAG--AGSAF 196
Query: 447 ETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPF--FQE 504
+I G ++++L VP+++ ACG L L + +P P ++
Sbjct: 197 RDLVIKHGAIDPLLALLA-----VPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQ 251
Query: 505 IVQALLTVTHRED 517
I+ L+ + H D
Sbjct: 252 ILPTLVRLLHHND 264
>pdb|1Z3H|A Chain A, The Exportin Cse1 In Its Cargo-free, Cytoplasmic State
pdb|1Z3H|B Chain B, The Exportin Cse1 In Its Cargo-free, Cytoplasmic State
Length = 968
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 60/135 (44%), Gaps = 20/135 (14%)
Query: 12 AQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKE 71
A+SV + K +E +L+Q + Q+ GF L+L + + P+ +R L KN + K
Sbjct: 12 AESVIASTAKTSERNLRQLETQD--GFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRK- 68
Query: 72 QHRKFELVQRWLS------LDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELP 125
W+ L ++ IK I+ + S ++ + + ++ +A + P
Sbjct: 69 ----------WVDENGNHLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFP 118
Query: 126 HKQWPELIGALLSNI 140
+ WP L+ L S +
Sbjct: 119 DR-WPTLLSDLASRL 132
>pdb|1WA5|C Chain C, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 960
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 60/135 (44%), Gaps = 20/135 (14%)
Query: 12 AQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKE 71
A+SV + K +E +L+Q + Q+ GF L+L + + P+ +R L KN + K
Sbjct: 12 AESVIASTAKTSERNLRQLETQD--GFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRK- 68
Query: 72 QHRKFELVQRWLS------LDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELP 125
W+ L ++ IK I+ + S ++ + + ++ +A + P
Sbjct: 69 ----------WVDENGNHLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFP 118
Query: 126 HKQWPELIGALLSNI 140
+ WP L+ L S +
Sbjct: 119 DR-WPTLLSDLASRL 132
>pdb|1U6G|C Chain C, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
Length = 1230
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Query: 193 RLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYE 252
RLA + ALG + N + D I ++ E + + + + +C+ AIS
Sbjct: 188 RLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH 247
Query: 253 KLAPYIQDIFNITAKAVREDEEPV---ALQAIEFWSSVCDEEI 292
++ Y++ I + K D++ + +QA E + C +E+
Sbjct: 248 RIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEV 290
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 85 LDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELP 125
+D S + ++KS IL+ SSP+ + +S AS + ++ LP
Sbjct: 849 IDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLP 889
>pdb|4A0C|A Chain A, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|B Chain B, Structure Of The Cand1-Cul4b-Rbx1 Complex
Length = 1253
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Query: 193 RLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYE 252
RLA + ALG + N + D I ++ E + + + + +C+ AIS
Sbjct: 211 RLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH 270
Query: 253 KLAPYIQDIFNITAKAVREDEEPV---ALQAIEFWSSVCDEEI 292
++ Y++ I + K D++ + +QA E + C +E+
Sbjct: 271 RIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEV 313
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 85 LDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELP 125
+D S + ++KS IL+ SSP+ + +S AS + ++ LP
Sbjct: 872 IDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLP 912
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,576,647
Number of Sequences: 62578
Number of extensions: 600774
Number of successful extensions: 2039
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1918
Number of HSP's gapped (non-prelim): 77
length of query: 653
length of database: 14,973,337
effective HSP length: 105
effective length of query: 548
effective length of database: 8,402,647
effective search space: 4604650556
effective search space used: 4604650556
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)