Query 006253
Match_columns 653
No_of_seqs 176 out of 1888
Neff 10.9
Searched_HMMs 46136
Date Thu Mar 28 20:35:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006253.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006253hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1241 Karyopherin (importin) 100.0 1.7E-79 3.8E-84 603.2 56.9 636 3-653 1-647 (859)
2 KOG2171 Karyopherin (importin) 100.0 4.4E-67 9.5E-72 542.4 51.8 588 2-653 3-611 (1075)
3 KOG2023 Nuclear transport rece 100.0 9.4E-68 2E-72 511.7 35.5 546 3-618 13-613 (885)
4 COG5215 KAP95 Karyopherin (imp 100.0 6.4E-64 1.4E-68 477.0 55.1 630 4-651 5-642 (858)
5 KOG1991 Nuclear transport rece 100.0 3.3E-37 7.2E-42 314.4 53.7 572 1-620 2-654 (1010)
6 KOG1992 Nuclear export recepto 100.0 1.7E-30 3.7E-35 259.5 44.4 588 1-641 4-672 (960)
7 KOG1993 Nuclear transport rece 100.0 2.1E-30 4.6E-35 257.6 38.8 596 5-639 2-690 (978)
8 KOG2171 Karyopherin (importin) 100.0 1.6E-29 3.6E-34 263.7 47.0 563 14-646 48-680 (1075)
9 KOG2274 Predicted importin 9 [ 100.0 2.1E-28 4.6E-33 247.2 47.6 576 2-642 3-651 (1005)
10 KOG2023 Nuclear transport rece 100.0 3E-28 6.5E-33 237.8 36.4 583 13-646 58-741 (885)
11 KOG1241 Karyopherin (importin) 100.0 4E-26 8.7E-31 226.9 42.3 505 89-652 126-727 (859)
12 COG5656 SXM1 Importin, protein 100.0 1.1E-24 2.4E-29 215.7 49.9 554 1-595 1-631 (970)
13 KOG1824 TATA-binding protein-i 100.0 1.5E-23 3.2E-28 212.7 47.5 566 7-646 9-689 (1233)
14 KOG2021 Nuclear mRNA export fa 99.9 8.8E-23 1.9E-27 202.5 41.8 614 1-651 1-741 (980)
15 COG5215 KAP95 Karyopherin (imp 99.9 2.7E-22 5.8E-27 193.2 42.9 523 50-649 105-724 (858)
16 KOG1824 TATA-binding protein-i 99.9 1.4E-18 3E-23 177.0 51.3 584 8-637 52-722 (1233)
17 COG5101 CRM1 Importin beta-rel 99.9 1.4E-18 3E-23 169.6 47.2 525 6-562 17-676 (1053)
18 KOG0213 Splicing factor 3b, su 99.9 1.8E-18 3.8E-23 171.8 42.7 546 4-596 364-960 (1172)
19 COG5657 CSE1 CAS/CSE protein i 99.9 2.5E-18 5.4E-23 175.7 44.3 576 6-636 7-646 (947)
20 KOG2022 Nuclear transport rece 99.9 2.5E-16 5.3E-21 160.4 53.9 600 4-649 8-747 (982)
21 KOG2081 Nuclear transport regu 99.8 3.3E-15 7.2E-20 146.0 38.6 480 21-553 2-554 (559)
22 KOG1242 Protein containing ada 99.8 4E-16 8.6E-21 154.7 32.1 469 91-646 54-532 (569)
23 KOG1242 Protein containing ada 99.8 4.9E-15 1.1E-19 147.0 38.1 501 36-628 54-555 (569)
24 COG5181 HSH155 U2 snRNP splice 99.8 4E-15 8.6E-20 145.5 34.5 575 4-640 169-797 (975)
25 PLN03200 cellulose synthase-in 99.7 5.2E-14 1.1E-18 160.5 39.3 579 3-638 13-724 (2102)
26 KOG0213 Splicing factor 3b, su 99.7 3.9E-13 8.4E-18 134.4 40.3 461 93-637 554-1065(1172)
27 PF01602 Adaptin_N: Adaptin N 99.7 3.1E-13 6.6E-18 144.8 42.7 509 4-635 8-522 (526)
28 PLN03200 cellulose synthase-in 99.7 4.8E-13 1E-17 152.8 45.0 552 7-643 193-818 (2102)
29 KOG0212 Uncharacterized conser 99.7 1.3E-13 2.9E-18 133.9 29.8 394 179-639 5-408 (675)
30 KOG0915 Uncharacterized conser 99.7 3.4E-13 7.3E-18 145.2 34.1 456 85-641 811-1310(1702)
31 PTZ00429 beta-adaptin; Provisi 99.6 1.2E-10 2.5E-15 124.3 49.3 507 5-635 34-544 (746)
32 PF01602 Adaptin_N: Adaptin N 99.6 1.4E-11 3.1E-16 132.0 39.9 443 5-534 44-522 (526)
33 KOG0212 Uncharacterized conser 99.6 3.2E-11 6.8E-16 117.7 37.4 394 96-539 4-409 (675)
34 COG5181 HSH155 U2 snRNP splice 99.6 6.1E-12 1.3E-16 123.5 31.4 471 93-637 359-870 (975)
35 PTZ00429 beta-adaptin; Provisi 99.6 5.8E-10 1.3E-14 119.0 47.6 438 1-541 66-512 (746)
36 KOG1991 Nuclear transport rece 99.5 4.7E-08 1E-12 102.6 50.1 445 36-534 297-798 (1010)
37 KOG0915 Uncharacterized conser 99.5 4.7E-09 1E-13 114.1 43.9 433 92-559 998-1451(1702)
38 KOG0166 Karyopherin (importin) 99.5 5E-12 1.1E-16 125.2 19.9 362 133-540 68-440 (514)
39 KOG0211 Protein phosphatase 2A 99.4 1.9E-09 4.1E-14 113.8 38.0 450 107-638 213-665 (759)
40 KOG0211 Protein phosphatase 2A 99.4 1.6E-10 3.5E-15 121.7 30.1 419 4-487 237-665 (759)
41 KOG0166 Karyopherin (importin) 99.4 3.1E-10 6.6E-15 112.8 27.2 346 52-442 79-439 (514)
42 PRK13800 putative oxidoreducta 99.4 1.2E-10 2.5E-15 130.5 26.5 271 95-482 624-895 (897)
43 PF10508 Proteasom_PSMB: Prote 99.3 1.5E-09 3.3E-14 113.1 30.1 402 97-538 43-464 (503)
44 PRK09687 putative lyase; Provi 99.3 1.5E-10 3.3E-15 110.2 20.7 251 179-533 28-279 (280)
45 PRK13800 putative oxidoreducta 99.3 2.8E-10 6E-15 127.5 26.1 275 38-436 622-896 (897)
46 PF08506 Cse1: Cse1; InterPro 99.3 5.7E-10 1.2E-14 110.0 24.0 222 233-481 110-370 (370)
47 KOG2020 Nuclear transport rece 99.3 3.3E-08 7.2E-13 107.6 39.1 579 4-617 11-707 (1041)
48 PRK09687 putative lyase; Provi 99.3 8.2E-10 1.8E-14 105.2 22.4 250 134-482 26-278 (280)
49 PF10508 Proteasom_PSMB: Prote 99.3 2.8E-08 6.1E-13 103.7 35.7 425 1-486 1-462 (503)
50 KOG1059 Vesicle coat complex A 99.3 1.7E-07 3.6E-12 94.9 37.4 195 85-289 137-365 (877)
51 KOG1943 Beta-tubulin folding c 99.2 5E-07 1.1E-11 95.8 40.5 507 38-638 342-882 (1133)
52 KOG1943 Beta-tubulin folding c 99.1 2.6E-07 5.6E-12 97.9 33.8 475 87-640 336-840 (1133)
53 KOG1060 Vesicle coat complex A 99.1 8.5E-07 1.8E-11 90.8 35.1 445 96-630 39-526 (968)
54 KOG1240 Protein kinase contain 99.1 2.8E-08 6.1E-13 105.8 24.5 316 132-507 423-745 (1431)
55 COG5064 SRP1 Karyopherin (impo 99.1 2.4E-09 5.2E-14 98.3 13.1 362 130-538 71-445 (526)
56 KOG1060 Vesicle coat complex A 99.0 2.4E-06 5.2E-11 87.6 34.3 431 5-538 73-535 (968)
57 PF03810 IBN_N: Importin-beta 99.0 1E-09 2.2E-14 82.9 8.0 76 23-102 1-76 (77)
58 KOG1248 Uncharacterized conser 99.0 7.8E-05 1.7E-09 80.8 48.1 259 351-642 638-903 (1176)
59 COG5064 SRP1 Karyopherin (impo 99.0 6E-08 1.3E-12 89.3 17.4 309 52-442 84-401 (526)
60 KOG1248 Uncharacterized conser 98.9 1.3E-06 2.8E-11 94.0 29.6 363 106-516 531-923 (1176)
61 KOG1240 Protein kinase contain 98.9 4.3E-07 9.4E-12 97.1 25.2 283 106-444 437-730 (1431)
62 KOG4535 HEAT and armadillo rep 98.9 1.3E-06 2.8E-11 84.4 25.7 438 103-560 7-585 (728)
63 PF12755 Vac14_Fab1_bd: Vacuol 98.9 1.4E-08 3E-13 78.7 8.6 93 383-485 2-95 (97)
64 PF12460 MMS19_C: RNAPII trans 98.9 3.1E-06 6.7E-11 86.7 28.1 201 343-555 204-413 (415)
65 PF12348 CLASP_N: CLASP N term 98.9 5.5E-08 1.2E-12 91.3 14.3 187 341-547 19-217 (228)
66 KOG1061 Vesicle coat complex A 98.8 1.6E-05 3.4E-10 82.3 31.7 454 6-528 52-520 (734)
67 KOG1062 Vesicle coat complex A 98.8 0.00027 5.8E-09 73.5 39.3 343 88-538 103-453 (866)
68 PF12348 CLASP_N: CLASP N term 98.8 3.9E-07 8.5E-12 85.6 18.2 186 227-443 15-210 (228)
69 KOG1062 Vesicle coat complex A 98.8 0.00012 2.6E-09 76.0 36.5 361 84-488 134-546 (866)
70 KOG1020 Sister chromatid cohes 98.8 9.5E-05 2.1E-09 81.8 37.4 451 109-643 794-1260(1692)
71 COG5240 SEC21 Vesicle coat com 98.8 0.00031 6.8E-09 70.0 37.5 280 93-397 23-333 (898)
72 KOG4224 Armadillo repeat prote 98.7 5.5E-07 1.2E-11 83.9 16.4 340 106-536 61-405 (550)
73 KOG1059 Vesicle coat complex A 98.7 9.9E-05 2.1E-09 75.5 32.3 249 173-486 143-401 (877)
74 KOG1020 Sister chromatid cohes 98.7 0.00038 8.1E-09 77.3 37.9 422 93-553 817-1272(1692)
75 PF12460 MMS19_C: RNAPII trans 98.7 5.5E-05 1.2E-09 77.6 30.3 224 392-653 172-411 (415)
76 KOG1992 Nuclear export recepto 98.6 0.0018 3.8E-08 67.8 44.7 586 8-640 93-796 (960)
77 KOG4224 Armadillo repeat prote 98.5 7.1E-06 1.5E-10 76.7 17.5 391 96-539 89-496 (550)
78 COG5240 SEC21 Vesicle coat com 98.5 7.9E-05 1.7E-09 74.1 24.0 293 88-438 260-554 (898)
79 PF13513 HEAT_EZ: HEAT-like re 98.5 2.7E-07 5.8E-12 64.1 4.9 55 381-437 1-55 (55)
80 PF08389 Xpo1: Exportin 1-like 98.5 6E-07 1.3E-11 78.0 8.2 131 106-243 2-148 (148)
81 KOG1061 Vesicle coat complex A 98.4 0.00027 5.8E-09 73.5 27.8 442 7-538 90-570 (734)
82 PF12755 Vac14_Fab1_bd: Vacuol 98.4 2.5E-06 5.5E-11 66.2 10.2 93 147-246 2-94 (97)
83 KOG2274 Predicted importin 9 [ 98.4 0.00067 1.5E-08 71.5 30.6 227 386-646 469-698 (1005)
84 KOG1058 Vesicle coat complex C 98.4 0.00086 1.9E-08 69.2 29.5 340 58-442 99-466 (948)
85 cd00020 ARM Armadillo/beta-cat 98.4 9.7E-07 2.1E-11 73.5 6.9 110 368-486 8-120 (120)
86 KOG2021 Nuclear mRNA export fa 98.4 0.0054 1.2E-07 63.6 46.3 509 29-589 181-819 (980)
87 KOG2259 Uncharacterized conser 98.3 0.00057 1.2E-08 69.5 24.2 117 133-258 200-320 (823)
88 KOG1058 Vesicle coat complex C 98.3 0.0092 2E-07 62.0 34.1 319 91-487 98-426 (948)
89 PF14500 MMS19_N: Dos2-interac 98.2 0.0012 2.6E-08 62.3 23.2 246 135-416 3-257 (262)
90 KOG2956 CLIP-associating prote 98.2 9E-05 2E-09 72.2 15.8 165 452-649 323-491 (516)
91 KOG1410 Nuclear transport rece 98.1 0.016 3.4E-07 59.5 52.3 143 5-162 7-159 (1082)
92 KOG1820 Microtubule-associated 98.1 0.00021 4.5E-09 77.1 19.0 209 361-610 247-458 (815)
93 KOG2032 Uncharacterized conser 98.1 0.00082 1.8E-08 66.2 20.7 171 356-543 206-378 (533)
94 PF05804 KAP: Kinesin-associat 98.1 0.026 5.5E-07 60.8 33.7 376 148-637 266-649 (708)
95 KOG0414 Chromosome condensatio 98.0 0.036 7.9E-07 60.9 36.1 121 351-487 899-1028(1251)
96 PF12717 Cnd1: non-SMC mitotic 98.0 0.00085 1.8E-08 59.8 17.7 131 105-248 1-139 (178)
97 KOG4535 HEAT and armadillo rep 98.0 0.022 4.8E-07 56.2 31.7 156 422-594 496-657 (728)
98 KOG4413 26S proteasome regulat 97.9 0.0066 1.4E-07 56.7 22.7 296 112-442 63-380 (524)
99 COG5096 Vesicle coat complex, 97.9 0.046 1E-06 58.5 35.4 140 1-161 53-196 (757)
100 KOG2259 Uncharacterized conser 97.9 0.0011 2.4E-08 67.5 18.4 173 343-537 212-440 (823)
101 KOG2956 CLIP-associating prote 97.9 0.0021 4.5E-08 63.1 19.4 194 80-288 275-476 (516)
102 KOG2022 Nuclear transport rece 97.9 0.057 1.2E-06 57.5 39.0 354 233-637 481-867 (982)
103 PF12717 Cnd1: non-SMC mitotic 97.9 0.0016 3.4E-08 58.1 17.4 111 52-180 1-111 (178)
104 KOG1078 Vesicle coat complex C 97.9 0.057 1.2E-06 56.8 34.4 121 343-486 406-532 (865)
105 KOG1820 Microtubule-associated 97.8 0.00097 2.1E-08 72.1 18.4 189 341-551 265-459 (815)
106 KOG1077 Vesicle coat complex A 97.8 0.041 9E-07 57.0 28.5 334 130-552 106-449 (938)
107 KOG2025 Chromosome condensatio 97.8 0.0026 5.6E-08 65.5 20.1 111 85-202 78-190 (892)
108 PF13513 HEAT_EZ: HEAT-like re 97.8 1.4E-05 3E-10 55.4 3.0 54 424-484 1-55 (55)
109 PF13646 HEAT_2: HEAT repeats; 97.8 0.00012 2.7E-09 56.7 8.4 84 370-482 2-88 (88)
110 PF13001 Ecm29: Proteasome sta 97.8 0.042 9.1E-07 57.8 28.6 84 5-103 25-113 (501)
111 KOG1967 DNA repair/transcripti 97.8 0.00071 1.5E-08 71.5 15.0 150 92-245 867-1021(1030)
112 PF05918 API5: Apoptosis inhib 97.7 0.016 3.5E-07 59.8 23.9 160 45-230 28-189 (556)
113 PLN03076 ARF guanine nucleotid 97.7 0.034 7.3E-07 66.0 28.8 284 52-367 1150-1498(1780)
114 cd00020 ARM Armadillo/beta-cat 97.7 0.00014 3E-09 60.3 7.4 108 321-439 8-120 (120)
115 PF03378 CAS_CSE1: CAS/CSE pro 97.7 0.038 8.2E-07 56.5 26.0 310 169-517 21-352 (435)
116 KOG2032 Uncharacterized conser 97.7 0.023 5E-07 56.4 22.8 292 100-439 222-531 (533)
117 PF05918 API5: Apoptosis inhib 97.6 0.086 1.9E-06 54.7 27.5 214 4-245 24-251 (556)
118 PF05804 KAP: Kinesin-associat 97.6 0.067 1.5E-06 57.7 27.7 363 111-539 268-652 (708)
119 PF04826 Arm_2: Armadillo-like 97.6 0.0017 3.8E-08 60.7 14.0 221 370-627 15-252 (254)
120 PF02985 HEAT: HEAT repeat; I 97.6 0.00013 2.9E-09 43.2 4.3 30 410-440 1-30 (31)
121 TIGR02270 conserved hypothetic 97.6 0.024 5.2E-07 57.3 22.8 243 130-486 53-296 (410)
122 KOG4653 Uncharacterized conser 97.6 0.0055 1.2E-07 64.6 18.2 233 221-488 729-966 (982)
123 COG1413 FOG: HEAT repeat [Ener 97.6 0.1 2.2E-06 52.2 27.5 283 37-436 43-332 (335)
124 KOG1078 Vesicle coat complex C 97.6 0.13 2.8E-06 54.3 27.6 286 92-439 245-532 (865)
125 KOG4413 26S proteasome regulat 97.5 0.013 2.7E-07 54.9 17.9 254 348-638 62-334 (524)
126 PLN03076 ARF guanine nucleotid 97.5 0.25 5.5E-06 59.0 32.7 365 84-468 1081-1512(1780)
127 PF08167 RIX1: rRNA processing 97.5 0.0023 4.9E-08 56.0 12.7 140 404-555 20-162 (165)
128 PF05004 IFRD: Interferon-rela 97.5 0.091 2E-06 51.2 24.6 191 227-442 51-260 (309)
129 PF14500 MMS19_N: Dos2-interac 97.5 0.015 3.2E-07 55.0 18.5 234 372-646 4-247 (262)
130 TIGR02270 conserved hypothetic 97.5 0.074 1.6E-06 53.9 24.5 241 93-439 55-296 (410)
131 COG1413 FOG: HEAT repeat [Ener 97.5 0.035 7.6E-07 55.6 22.4 249 130-486 42-304 (335)
132 KOG1967 DNA repair/transcripti 97.5 0.00089 1.9E-08 70.8 10.8 149 130-283 866-1018(1030)
133 KOG0168 Putative ubiquitin fus 97.4 0.24 5.2E-06 52.8 30.0 193 176-399 169-367 (1051)
134 KOG4653 Uncharacterized conser 97.4 0.021 4.6E-07 60.5 20.2 172 345-535 784-963 (982)
135 COG5096 Vesicle coat complex, 97.4 0.27 5.8E-06 53.0 32.7 166 187-397 30-196 (757)
136 PF05004 IFRD: Interferon-rela 97.4 0.038 8.2E-07 53.8 21.0 195 96-290 47-258 (309)
137 KOG1077 Vesicle coat complex A 97.4 0.25 5.3E-06 51.6 41.1 73 89-162 143-218 (938)
138 COG5218 YCG1 Chromosome conden 97.4 0.015 3.3E-07 58.7 17.5 176 5-201 13-195 (885)
139 PF01603 B56: Protein phosphat 97.4 0.02 4.3E-07 58.4 19.1 230 5-256 135-378 (409)
140 KOG1293 Proteins containing ar 97.4 0.096 2.1E-06 54.1 23.3 140 380-535 390-532 (678)
141 PF13646 HEAT_2: HEAT repeats; 97.3 0.0022 4.7E-08 49.6 9.3 86 95-201 2-88 (88)
142 PF08167 RIX1: rRNA processing 97.3 0.0066 1.4E-07 53.1 12.9 137 128-268 22-163 (165)
143 KOG2549 Transcription initiati 97.2 0.0093 2E-07 59.9 14.6 157 220-397 208-371 (576)
144 PF02985 HEAT: HEAT repeat; I 97.2 0.00039 8.4E-09 41.1 3.2 31 368-398 1-31 (31)
145 KOG1993 Nuclear transport rece 97.2 0.39 8.4E-06 51.0 35.9 357 107-513 412-790 (978)
146 PF13251 DUF4042: Domain of un 97.2 0.0038 8.2E-08 54.8 10.4 142 107-250 1-176 (182)
147 KOG0168 Putative ubiquitin fus 97.2 0.12 2.5E-06 55.1 22.1 210 380-624 181-396 (1051)
148 KOG1243 Protein kinase [Genera 97.2 0.011 2.4E-07 61.4 14.7 191 216-442 327-518 (690)
149 KOG1517 Guanine nucleotide bin 97.2 0.058 1.3E-06 58.5 20.2 101 381-488 571-673 (1387)
150 PF10521 DUF2454: Protein of u 97.2 0.022 4.7E-07 55.0 16.1 173 380-559 88-276 (282)
151 PF04826 Arm_2: Armadillo-like 97.1 0.017 3.8E-07 54.1 14.5 187 95-290 15-206 (254)
152 PF11865 DUF3385: Domain of un 97.1 0.013 2.7E-07 50.9 12.6 151 407-592 8-159 (160)
153 PF10274 ParcG: Parkin co-regu 97.1 0.0044 9.5E-08 53.8 9.1 91 456-554 36-130 (183)
154 KOG0891 DNA-dependent protein 97.0 1.5 3.3E-05 53.8 37.3 544 20-649 461-1054(2341)
155 PF13251 DUF4042: Domain of un 97.0 0.0094 2E-07 52.3 10.8 149 383-539 2-177 (182)
156 cd00256 VATPase_H VATPase_H, r 97.0 0.29 6.4E-06 49.5 22.3 203 34-249 50-259 (429)
157 PF12719 Cnd3: Nuclear condens 96.9 0.21 4.6E-06 48.8 20.8 112 131-250 26-145 (298)
158 KOG1243 Protein kinase [Genera 96.9 0.016 3.5E-07 60.2 13.0 192 256-490 326-519 (690)
159 KOG1517 Guanine nucleotide bin 96.8 0.08 1.7E-06 57.5 17.8 194 34-250 469-673 (1387)
160 KOG4524 Uncharacterized conser 96.8 0.54 1.2E-05 51.1 23.7 156 368-539 804-976 (1014)
161 KOG0414 Chromosome condensatio 96.8 0.027 5.9E-07 61.8 14.4 142 37-204 919-1063(1251)
162 KOG1293 Proteins containing ar 96.8 0.89 1.9E-05 47.3 30.0 132 344-487 392-534 (678)
163 PF03378 CAS_CSE1: CAS/CSE pro 96.7 0.026 5.7E-07 57.6 13.3 135 493-640 15-149 (435)
164 KOG2025 Chromosome condensatio 96.7 0.83 1.8E-05 48.0 23.2 193 196-435 62-255 (892)
165 PF08506 Cse1: Cse1; InterPro 96.7 0.8 1.7E-05 45.9 24.2 89 341-434 267-370 (370)
166 KOG1525 Sister chromatid cohes 96.6 2 4.2E-05 49.7 32.7 339 92-487 48-406 (1266)
167 KOG2160 Armadillo/beta-catenin 96.6 0.5 1.1E-05 45.6 19.9 176 13-205 93-282 (342)
168 KOG2933 Uncharacterized conser 96.6 0.028 6.1E-07 52.5 11.2 142 374-539 95-237 (334)
169 cd08050 TAF6 TATA Binding Prot 96.6 0.028 6.1E-07 55.7 11.9 84 313-396 251-340 (343)
170 PF01603 B56: Protein phosphat 96.5 0.89 1.9E-05 46.5 22.7 231 93-360 134-372 (409)
171 KOG2933 Uncharacterized conser 96.5 0.022 4.8E-07 53.1 9.7 134 341-489 100-237 (334)
172 PF12719 Cnd3: Nuclear condens 96.5 0.3 6.6E-06 47.7 18.3 110 93-206 28-144 (298)
173 PF05536 Neurochondrin: Neuroc 96.4 1.7 3.6E-05 46.2 28.4 188 344-540 72-265 (543)
174 KOG4500 Rho/Rac GTPase guanine 96.4 1.2 2.5E-05 44.0 21.7 350 100-486 50-431 (604)
175 PF04510 DUF577: Family of unk 96.4 0.36 7.7E-06 41.3 15.4 152 92-249 3-165 (174)
176 KOG0392 SNF2 family DNA-depend 96.3 1.1 2.3E-05 50.4 22.5 158 127-290 71-238 (1549)
177 PF10274 ParcG: Parkin co-regu 96.3 0.042 9.1E-07 47.9 9.9 124 408-541 37-169 (183)
178 PF08064 UME: UME (NUC010) dom 96.2 0.046 1E-06 43.6 9.2 100 497-618 4-106 (107)
179 KOG1949 Uncharacterized conser 96.2 0.7 1.5E-05 48.4 19.4 203 80-288 113-330 (1005)
180 KOG0392 SNF2 family DNA-depend 96.1 0.057 1.2E-06 59.8 11.7 169 346-539 750-928 (1549)
181 KOG0946 ER-Golgi vesicle-tethe 96.1 2.5 5.4E-05 45.2 27.7 157 129-290 20-196 (970)
182 PF11865 DUF3385: Domain of un 96.1 0.15 3.2E-06 44.3 12.3 121 499-639 3-159 (160)
183 KOG0891 DNA-dependent protein 96.0 6.1 0.00013 49.0 34.6 239 372-650 486-735 (2341)
184 smart00802 UME Domain in UVSB 96.0 0.057 1.2E-06 42.8 8.4 102 496-617 3-105 (107)
185 KOG2160 Armadillo/beta-catenin 95.9 0.12 2.6E-06 49.7 11.8 147 378-541 94-245 (342)
186 PF10521 DUF2454: Protein of u 95.8 0.3 6.6E-06 47.1 14.3 146 127-272 115-277 (282)
187 KOG2062 26S proteasome regulat 95.8 2.6 5.6E-05 44.7 21.1 84 343-431 603-688 (929)
188 PF14664 RICTOR_N: Rapamycin-i 95.7 1.8 4E-05 43.4 19.9 123 127-255 21-144 (371)
189 PF12231 Rif1_N: Rap1-interact 95.7 2.7 5.9E-05 42.4 23.7 220 52-289 59-303 (372)
190 KOG2137 Protein kinase [Signal 95.7 0.84 1.8E-05 48.2 17.6 146 130-288 348-495 (700)
191 KOG2062 26S proteasome regulat 95.7 3.5 7.7E-05 43.8 21.6 107 344-469 570-676 (929)
192 COG5095 TAF6 Transcription ini 95.6 0.6 1.3E-05 43.5 14.4 110 406-541 198-321 (450)
193 KOG1525 Sister chromatid cohes 95.6 6.1 0.00013 45.9 37.2 303 50-396 61-405 (1266)
194 COG5656 SXM1 Importin, protein 95.6 3.9 8.4E-05 43.5 46.9 389 80-509 334-775 (970)
195 KOG1949 Uncharacterized conser 95.6 0.15 3.2E-06 53.1 11.5 149 94-249 176-332 (1005)
196 KOG2081 Nuclear transport regu 95.6 3.4 7.3E-05 42.5 32.8 322 131-508 199-553 (559)
197 COG5095 TAF6 Transcription ini 95.5 0.3 6.4E-06 45.4 12.2 86 312-398 269-361 (450)
198 PF03224 V-ATPase_H_N: V-ATPas 95.4 0.094 2E-06 51.6 9.7 207 34-252 52-273 (312)
199 COG5218 YCG1 Chromosome conden 95.3 4 8.7E-05 42.1 20.0 114 172-289 47-161 (885)
200 KOG0889 Histone acetyltransfer 95.2 13 0.00028 47.3 38.0 295 321-635 985-1304(3550)
201 KOG2213 Apoptosis inhibitor 5/ 95.2 3.3 7.2E-05 40.5 18.9 237 51-332 36-295 (460)
202 smart00802 UME Domain in UVSB 95.2 0.14 3E-06 40.6 7.9 94 453-557 6-105 (107)
203 PF13001 Ecm29: Proteasome sta 95.1 2.5 5.4E-05 44.7 19.5 212 50-286 248-485 (501)
204 COG5098 Chromosome condensatio 95.1 5.3 0.00011 42.2 25.2 129 349-487 282-416 (1128)
205 KOG0413 Uncharacterized conser 94.7 8.2 0.00018 42.5 31.9 181 98-288 478-684 (1529)
206 PF12054 DUF3535: Domain of un 94.6 2 4.3E-05 44.3 16.7 98 342-440 100-209 (441)
207 PF14631 FancD2: Fanconi anaem 94.5 14 0.0003 44.2 25.2 115 403-539 429-545 (1426)
208 PF11864 DUF3384: Domain of un 94.5 7.4 0.00016 40.8 35.0 292 146-485 5-329 (464)
209 PF14664 RICTOR_N: Rapamycin-i 94.4 4.7 0.0001 40.5 18.5 225 11-251 33-272 (371)
210 KOG2149 Uncharacterized conser 94.3 1.1 2.3E-05 44.1 13.1 129 131-264 58-186 (393)
211 PF08064 UME: UME (NUC010) dom 94.3 0.31 6.7E-06 38.9 8.1 94 404-514 6-106 (107)
212 KOG0889 Histone acetyltransfer 94.3 22 0.00047 45.4 30.1 335 92-486 984-1346(3550)
213 PF10363 DUF2435: Protein of u 94.2 0.71 1.5E-05 35.5 9.5 74 176-254 5-78 (92)
214 KOG0803 Predicted E3 ubiquitin 94.1 5.9 0.00013 46.1 20.3 106 175-284 42-148 (1312)
215 COG5116 RPN2 26S proteasome re 94.1 0.69 1.5E-05 47.1 11.6 151 371-557 520-671 (926)
216 KOG2549 Transcription initiati 94.1 1.1 2.3E-05 45.8 12.9 154 345-514 223-393 (576)
217 COG5098 Chromosome condensatio 94.1 1.7 3.7E-05 45.6 14.4 118 83-205 290-415 (1128)
218 KOG2137 Protein kinase [Signal 94.0 1 2.2E-05 47.6 13.0 168 91-268 348-516 (700)
219 KOG2759 Vacuolar H+-ATPase V1 94.0 7.2 0.00016 38.7 23.9 203 36-250 64-273 (442)
220 KOG2149 Uncharacterized conser 93.9 0.96 2.1E-05 44.4 11.8 132 411-558 60-192 (393)
221 PF08623 TIP120: TATA-binding 93.6 1.7 3.8E-05 37.6 11.7 130 453-595 4-152 (169)
222 PF04118 Dopey_N: Dopey, N-ter 93.6 4.1 8.8E-05 39.5 15.6 148 378-541 22-172 (307)
223 PF01347 Vitellogenin_N: Lipop 93.6 3.9 8.4E-05 44.9 17.8 78 345-436 506-586 (618)
224 PF00514 Arm: Armadillo/beta-c 93.5 0.14 3.1E-06 32.4 3.9 30 409-439 12-41 (41)
225 smart00638 LPD_N Lipoprotein N 93.5 7.7 0.00017 42.1 19.6 153 349-530 376-539 (574)
226 KOG0413 Uncharacterized conser 93.4 15 0.00033 40.6 35.0 106 92-204 576-684 (1529)
227 PF10363 DUF2435: Protein of u 93.4 1.1 2.3E-05 34.6 9.1 75 460-544 5-80 (92)
228 COG5116 RPN2 26S proteasome re 93.1 1.9 4.2E-05 44.1 12.8 116 374-517 559-675 (926)
229 KOG0929 Guanine nucleotide exc 92.9 10 0.00022 44.6 19.4 230 105-365 1050-1305(1514)
230 PF08767 CRM1_C: CRM1 C termin 92.7 0.66 1.4E-05 45.6 9.1 153 473-641 43-198 (319)
231 PF07571 DUF1546: Protein of u 92.6 0.34 7.3E-06 37.4 5.4 57 340-396 17-78 (92)
232 PF12231 Rif1_N: Rap1-interact 92.5 13 0.00028 37.6 30.7 282 144-485 59-351 (372)
233 PF03224 V-ATPase_H_N: V-ATPas 92.5 7.8 0.00017 38.2 16.5 88 410-513 106-200 (312)
234 PF11698 V-ATPase_H_C: V-ATPas 92.5 0.58 1.3E-05 37.6 6.7 70 131-205 43-115 (119)
235 PF12530 DUF3730: Protein of u 92.1 10 0.00022 35.4 18.3 194 13-233 11-217 (234)
236 cd08050 TAF6 TATA Binding Prot 91.6 14 0.00031 36.8 17.0 90 524-622 234-323 (343)
237 PF08623 TIP120: TATA-binding 91.3 0.44 9.5E-06 41.2 5.3 78 187-269 38-115 (169)
238 PF09324 DUF1981: Domain of un 91.3 2.5 5.5E-05 32.1 8.8 68 217-284 15-83 (86)
239 PF12830 Nipped-B_C: Sister ch 91.0 9.5 0.00021 34.2 13.8 72 93-167 9-80 (187)
240 PF04118 Dopey_N: Dopey, N-ter 90.7 17 0.00038 35.3 23.3 164 106-289 3-167 (307)
241 KOG1851 Uncharacterized conser 90.6 42 0.00091 39.6 33.2 169 347-536 1505-1678(1710)
242 KOG1048 Neural adherens juncti 90.6 29 0.00062 37.6 20.3 109 134-249 236-350 (717)
243 KOG3961 Uncharacterized conser 90.4 1.1 2.5E-05 39.5 6.9 94 456-559 112-209 (262)
244 KOG1822 Uncharacterized conser 90.2 50 0.0011 39.9 34.4 237 4-257 877-1136(2067)
245 KOG0567 HEAT repeat-containing 90.1 16 0.00035 34.0 20.5 119 40-202 6-126 (289)
246 PF01347 Vitellogenin_N: Lipop 90.0 34 0.00073 37.6 22.7 132 93-245 432-586 (618)
247 PF08569 Mo25: Mo25-like; Int 89.8 22 0.00048 35.2 20.2 201 37-249 76-284 (335)
248 PF12830 Nipped-B_C: Sister ch 89.6 5.7 0.00012 35.6 11.2 79 169-259 7-85 (187)
249 KOG1848 Uncharacterized conser 89.5 48 0.001 38.6 21.4 152 103-256 853-1034(1610)
250 PF08767 CRM1_C: CRM1 C termin 89.5 23 0.0005 34.9 21.6 169 147-330 43-224 (319)
251 cd00256 VATPase_H VATPase_H, r 89.1 29 0.00062 35.6 26.5 191 91-290 52-259 (429)
252 PF12397 U3snoRNP10: U3 small 88.5 8.8 0.00019 31.5 10.8 75 362-441 1-76 (121)
253 PF00514 Arm: Armadillo/beta-c 88.2 0.99 2.2E-05 28.5 3.9 28 458-485 12-40 (41)
254 PF11919 DUF3437: Domain of un 88.2 1.1 2.4E-05 34.2 4.7 57 382-441 4-60 (90)
255 PF14668 RICTOR_V: Rapamycin-i 88.1 1.9 4.1E-05 31.4 5.6 56 383-441 3-60 (73)
256 PF11864 DUF3384: Domain of un 87.8 39 0.00085 35.5 34.5 240 18-288 5-284 (464)
257 smart00638 LPD_N Lipoprotein N 87.2 49 0.0011 36.0 22.9 135 93-245 394-542 (574)
258 PF14868 DUF4487: Domain of un 86.5 49 0.0011 35.3 23.4 55 345-399 496-555 (559)
259 PF11698 V-ATPase_H_C: V-ATPas 86.4 1.9 4.1E-05 34.8 5.3 75 36-122 42-116 (119)
260 PF12530 DUF3730: Protein of u 86.1 30 0.00064 32.4 20.2 204 227-468 9-213 (234)
261 cd03561 VHS VHS domain family; 86.0 13 0.00028 31.1 10.6 83 454-541 33-117 (133)
262 KOG0567 HEAT repeat-containing 85.4 11 0.00023 35.1 10.1 55 8-65 192-246 (289)
263 KOG0803 Predicted E3 ubiquitin 85.3 53 0.0012 38.8 17.8 106 372-485 46-152 (1312)
264 KOG1851 Uncharacterized conser 85.3 19 0.00042 42.2 14.0 151 36-204 1525-1677(1710)
265 PF08389 Xpo1: Exportin 1-like 85.1 3 6.6E-05 35.6 6.6 125 346-481 5-148 (148)
266 smart00185 ARM Armadillo/beta- 84.4 1.6 3.5E-05 27.3 3.5 28 410-438 13-40 (41)
267 cd03568 VHS_STAM VHS domain fa 84.2 18 0.0004 30.7 10.6 100 375-489 12-113 (144)
268 PF12333 Ipi1_N: Rix1 complex 83.9 3.1 6.7E-05 32.9 5.5 63 495-560 2-65 (102)
269 PF08569 Mo25: Mo25-like; Int 83.8 48 0.001 32.8 26.9 188 95-290 79-284 (335)
270 KOG4199 Uncharacterized conser 82.9 48 0.001 32.2 30.2 311 128-484 105-442 (461)
271 cd03567 VHS_GGA VHS domain fam 82.7 13 0.00028 31.3 9.0 74 367-442 38-119 (139)
272 KOG2011 Sister chromatid cohes 82.5 45 0.00097 38.0 15.3 135 141-288 297-434 (1048)
273 smart00288 VHS Domain present 82.4 15 0.00033 30.7 9.4 78 130-208 36-114 (133)
274 KOG4500 Rho/Rac GTPase guanine 81.9 61 0.0013 32.7 26.5 309 94-429 89-421 (604)
275 cd03561 VHS VHS domain family; 81.3 13 0.00028 31.1 8.6 80 129-209 35-116 (133)
276 cd03569 VHS_Hrs_Vps27p VHS dom 80.9 17 0.00036 30.8 9.2 77 130-208 40-117 (142)
277 PF12765 Cohesin_HEAT: HEAT re 80.8 2.9 6.3E-05 26.6 3.5 41 115-155 2-42 (42)
278 cd03569 VHS_Hrs_Vps27p VHS dom 80.4 34 0.00073 29.0 10.8 76 408-489 40-117 (142)
279 PF04388 Hamartin: Hamartin pr 80.2 1E+02 0.0022 34.1 20.7 154 3-184 4-162 (668)
280 cd03572 ENTH_epsin_related ENT 80.2 11 0.00024 30.7 7.4 76 127-204 34-118 (122)
281 PF09324 DUF1981: Domain of un 80.2 10 0.00023 28.7 7.0 69 173-244 16-84 (86)
282 cd03568 VHS_STAM VHS domain fa 79.4 26 0.00056 29.8 9.8 78 172-251 35-113 (144)
283 KOG1837 Uncharacterized conser 79.3 14 0.0003 43.3 10.2 105 93-203 1503-1609(1621)
284 PF05536 Neurochondrin: Neuroc 79.0 97 0.0021 33.2 40.1 241 130-398 4-263 (543)
285 PF14225 MOR2-PAG1_C: Cell mor 78.9 61 0.0013 30.8 22.4 187 363-595 60-259 (262)
286 PF08713 DNA_alkylation: DNA a 78.7 6 0.00013 36.4 6.5 89 341-442 98-187 (213)
287 PF04510 DUF577: Family of unk 78.7 30 0.00065 30.0 9.8 139 410-562 4-144 (174)
288 KOG0929 Guanine nucleotide exc 78.4 99 0.0021 36.9 16.6 247 377-646 1047-1307(1514)
289 COG5234 CIN1 Beta-tubulin fold 78.3 38 0.00083 36.2 12.2 105 381-487 358-492 (993)
290 PF12765 Cohesin_HEAT: HEAT re 78.1 3.3 7.2E-05 26.4 3.1 41 390-434 2-42 (42)
291 KOG2122 Beta-catenin-binding p 77.8 82 0.0018 37.2 15.3 56 106-161 365-424 (2195)
292 KOG2085 Serine/threonine prote 77.6 82 0.0018 31.6 17.2 89 391-487 323-415 (457)
293 COG5369 Uncharacterized conser 77.1 98 0.0021 32.3 18.0 277 131-439 293-594 (743)
294 KOG2122 Beta-catenin-binding p 76.4 1.8E+02 0.0038 34.8 19.6 71 408-487 529-602 (2195)
295 cd00197 VHS_ENTH_ANTH VHS, ENT 76.2 24 0.00052 28.5 8.6 75 363-438 33-114 (115)
296 PF08146 BP28CT: BP28CT (NUC21 75.9 23 0.0005 30.5 8.7 85 522-621 36-121 (153)
297 PF00790 VHS: VHS domain; Int 75.9 12 0.00027 31.5 7.1 77 130-207 41-120 (140)
298 cd03567 VHS_GGA VHS domain fam 75.9 40 0.00087 28.4 9.9 77 173-251 37-119 (139)
299 KOG4524 Uncharacterized conser 75.4 1.5E+02 0.0032 33.5 37.0 62 577-641 819-880 (1014)
300 PF12333 Ipi1_N: Rix1 complex 75.4 8.5 0.00018 30.4 5.5 61 401-468 3-63 (102)
301 PF04388 Hamartin: Hamartin pr 74.7 73 0.0016 35.2 14.1 93 130-228 69-161 (668)
302 PF11935 DUF3453: Domain of un 74.1 78 0.0017 29.7 13.4 122 140-268 2-161 (239)
303 KOG3961 Uncharacterized conser 73.9 4.3 9.3E-05 36.1 3.7 67 581-653 134-204 (262)
304 KOG2213 Apoptosis inhibitor 5/ 73.5 1E+02 0.0022 30.7 19.5 101 96-204 29-136 (460)
305 PF11701 UNC45-central: Myosin 73.4 11 0.00023 32.7 6.2 129 344-482 20-155 (157)
306 KOG2085 Serine/threonine prote 73.2 1.1E+02 0.0023 30.8 14.7 137 108-255 278-421 (457)
307 KOG3036 Protein involved in ce 73.1 68 0.0015 29.7 10.9 120 128-249 120-248 (293)
308 KOG2973 Uncharacterized conser 72.9 67 0.0014 30.9 11.2 103 372-486 8-111 (353)
309 KOG2199 Signal transducing ada 72.6 42 0.00091 33.1 10.1 104 374-490 19-122 (462)
310 PF07571 DUF1546: Protein of u 72.5 17 0.00038 28.0 6.4 61 378-440 17-79 (92)
311 KOG1822 Uncharacterized conser 72.4 2.4E+02 0.0053 34.6 38.0 132 410-558 877-1010(2067)
312 KOG0946 ER-Golgi vesicle-tethe 72.2 1.6E+02 0.0035 32.4 32.0 185 17-205 37-241 (970)
313 COG5101 CRM1 Importin beta-rel 71.2 1.5E+02 0.0032 31.7 41.3 64 405-469 566-630 (1053)
314 PF12783 Sec7_N: Guanine nucle 70.9 72 0.0016 27.9 12.2 100 190-289 36-146 (168)
315 PF08146 BP28CT: BP28CT (NUC21 70.6 65 0.0014 27.7 10.2 111 472-590 36-147 (153)
316 PF12397 U3snoRNP10: U3 small 70.2 47 0.001 27.1 9.1 73 405-487 2-75 (121)
317 KOG2973 Uncharacterized conser 69.3 1.1E+02 0.0024 29.5 18.3 106 1-123 1-113 (353)
318 smart00288 VHS Domain present 68.9 54 0.0012 27.4 9.2 76 408-489 36-114 (133)
319 PF14631 FancD2: Fanconi anaem 68.6 91 0.002 37.7 14.0 155 452-641 429-587 (1426)
320 PF04078 Rcd1: Cell differenti 68.2 23 0.00051 33.1 7.3 116 132-249 96-219 (262)
321 cd06561 AlkD_like A new struct 67.7 31 0.00068 31.1 8.3 65 370-442 108-173 (197)
322 PF11701 UNC45-central: Myosin 67.6 15 0.00033 31.8 5.8 135 135-282 7-152 (157)
323 cd03565 VHS_Tom1 VHS domain fa 67.2 77 0.0017 26.8 10.3 81 455-541 35-120 (141)
324 KOG2011 Sister chromatid cohes 67.2 2.4E+02 0.0052 32.5 21.9 59 187-249 298-356 (1048)
325 PF14222 MOR2-PAG1_N: Cell mor 65.5 2E+02 0.0043 31.0 26.1 186 96-289 133-346 (552)
326 PF12054 DUF3535: Domain of un 64.5 1.8E+02 0.004 30.2 21.0 58 381-443 101-159 (441)
327 PF01465 GRIP: GRIP domain; I 64.4 18 0.00038 23.6 4.2 35 89-123 4-38 (46)
328 KOG4199 Uncharacterized conser 62.5 1.6E+02 0.0035 28.8 22.9 135 411-558 285-425 (461)
329 PF12612 TFCD_C: Tubulin foldi 62.0 1.2E+02 0.0026 27.3 12.4 109 89-204 4-115 (193)
330 KOG1222 Kinesin associated pro 61.8 71 0.0015 32.6 9.6 138 111-253 521-668 (791)
331 cd00197 VHS_ENTH_ANTH VHS, ENT 60.9 87 0.0019 25.2 9.8 75 127-203 33-113 (115)
332 PF12074 DUF3554: Domain of un 60.8 1.8E+02 0.004 28.9 17.1 159 91-255 60-242 (339)
333 PF14961 BROMI: Broad-minded p 60.4 1E+02 0.0022 35.7 11.5 68 95-162 164-233 (1296)
334 COG4912 Predicted DNA alkylati 60.1 65 0.0014 29.3 8.3 80 353-440 103-184 (222)
335 smart00185 ARM Armadillo/beta- 59.2 15 0.00033 22.6 3.3 26 133-158 14-39 (41)
336 PF03130 HEAT_PBS: PBS lyase H 58.5 8.8 0.00019 21.5 1.8 14 426-439 1-14 (27)
337 PF12612 TFCD_C: Tubulin foldi 58.1 82 0.0018 28.4 9.0 78 452-537 81-159 (193)
338 KOG2753 Uncharacterized conser 57.8 1.9E+02 0.0041 28.2 16.1 149 456-637 63-216 (378)
339 PF11935 DUF3453: Domain of un 57.4 1.6E+02 0.0035 27.6 11.1 130 420-555 3-160 (239)
340 PF03542 Tuberin: Tuberin; In 57.1 2.2E+02 0.0047 28.6 14.6 151 129-289 139-303 (356)
341 KOG1048 Neural adherens juncti 56.5 38 0.00081 36.8 7.3 113 411-537 235-350 (717)
342 PF08161 NUC173: NUC173 domain 56.5 34 0.00074 30.9 6.1 57 580-642 19-75 (198)
343 PF14868 DUF4487: Domain of un 56.3 2.8E+02 0.0062 29.7 22.6 284 344-640 243-555 (559)
344 PF07539 DRIM: Down-regulated 56.0 84 0.0018 26.6 8.0 46 2-47 15-61 (141)
345 PF04078 Rcd1: Cell differenti 55.6 1.2E+02 0.0027 28.5 9.6 97 106-205 110-218 (262)
346 PF07923 N1221: N1221-like pro 55.4 2.1E+02 0.0045 27.9 13.1 60 64-125 34-93 (293)
347 PF12783 Sec7_N: Guanine nucle 55.1 65 0.0014 28.2 7.7 73 131-205 73-146 (168)
348 smart00567 EZ_HEAT E-Z type HE 55.0 16 0.00034 21.0 2.5 15 381-395 1-15 (30)
349 smart00755 Grip golgin-97, Ran 54.6 27 0.00059 22.7 3.8 33 90-123 4-36 (46)
350 KOG1222 Kinesin associated pro 54.4 2.6E+02 0.0057 28.8 22.6 94 173-271 303-397 (791)
351 PF14668 RICTOR_V: Rapamycin-i 53.9 25 0.00053 25.7 3.9 52 427-487 4-59 (73)
352 KOG2759 Vacuolar H+-ATPase V1 53.8 2.6E+02 0.0055 28.4 26.7 70 409-486 366-438 (442)
353 COG5231 VMA13 Vacuolar H+-ATPa 52.8 27 0.00059 33.5 4.9 73 131-206 356-429 (432)
354 PF11707 Npa1: Ribosome 60S bi 52.1 2.5E+02 0.0055 27.9 14.9 109 176-286 58-184 (330)
355 PLN03205 ATR interacting prote 50.8 1.5E+02 0.0033 29.5 9.7 95 110-205 302-401 (652)
356 KOG2256 Predicted protein invo 50.5 3.6E+02 0.0077 29.2 20.2 181 173-376 281-477 (661)
357 PF08161 NUC173: NUC173 domain 50.5 1.9E+02 0.0042 26.1 14.9 58 146-207 15-72 (198)
358 PF12074 DUF3554: Domain of un 50.2 2.7E+02 0.0059 27.7 17.6 196 89-290 19-236 (339)
359 PF14676 FANCI_S2: FANCI solen 49.2 1.8E+02 0.0038 25.2 9.3 121 111-244 37-157 (158)
360 PF04869 Uso1_p115_head: Uso1 48.0 2.8E+02 0.0061 27.2 11.4 170 36-207 33-233 (312)
361 PF11919 DUF3437: Domain of un 46.5 57 0.0012 25.0 5.0 56 425-487 4-59 (90)
362 PF09759 Atx10homo_assoc: Spin 46.5 46 0.001 26.2 4.6 57 384-442 3-62 (102)
363 cd03565 VHS_Tom1 VHS domain fa 46.3 1.8E+02 0.0039 24.6 10.3 115 375-509 13-133 (141)
364 KOG2256 Predicted protein invo 46.0 4.2E+02 0.0091 28.7 17.2 75 424-511 256-331 (661)
365 KOG1877 Putative transmembrane 45.9 4.8E+02 0.01 29.3 16.0 82 164-250 47-128 (819)
366 PF11640 TAN: Telomere-length 45.6 1.8E+02 0.0038 25.1 8.7 89 96-185 8-118 (155)
367 cd07064 AlkD_like_1 A new stru 43.5 1.5E+02 0.0032 27.1 8.3 66 367-441 115-181 (208)
368 KOG2199 Signal transducing ada 43.0 1.7E+02 0.0037 29.2 8.7 77 365-443 43-122 (462)
369 cd03572 ENTH_epsin_related ENT 41.4 2E+02 0.0043 23.6 9.1 43 218-260 37-79 (122)
370 COG5369 Uncharacterized conser 41.0 2.1E+02 0.0046 30.0 9.3 73 130-205 472-545 (743)
371 KOG1848 Uncharacterized conser 40.9 7.2E+02 0.016 29.9 20.6 101 187-287 1008-1130(1610)
372 PF14961 BROMI: Broad-minded p 40.3 3.2E+02 0.007 32.0 11.4 74 177-254 164-237 (1296)
373 KOG2229 Protein required for a 38.3 4.9E+02 0.011 27.3 22.8 96 141-245 30-126 (616)
374 PF08713 DNA_alkylation: DNA a 37.8 3.1E+02 0.0068 24.8 13.1 78 173-260 119-196 (213)
375 PF11707 Npa1: Ribosome 60S bi 37.7 4.2E+02 0.0091 26.3 16.1 155 133-289 58-237 (330)
376 PF00790 VHS: VHS domain; Int 37.6 2.5E+02 0.0054 23.6 12.8 78 171-250 39-120 (140)
377 PF07539 DRIM: Down-regulated 36.8 2.2E+02 0.0048 24.1 7.6 82 91-183 16-97 (141)
378 PF11841 DUF3361: Domain of un 36.1 2.9E+02 0.0062 23.9 11.1 113 172-289 13-131 (160)
379 PF14222 MOR2-PAG1_N: Cell mor 34.2 6.3E+02 0.014 27.3 28.2 199 83-289 26-249 (552)
380 KOG1087 Cytosolic sorting prot 33.3 3E+02 0.0064 28.8 9.3 102 99-208 12-115 (470)
381 KOG3036 Protein involved in ce 32.3 4.3E+02 0.0093 24.8 13.8 141 146-289 94-247 (293)
382 KOG3613 Dopey and related pred 30.7 2E+02 0.0044 34.8 8.3 82 380-468 1500-1582(1749)
383 cd00872 PI3Ka_I Phosphoinositi 29.6 2.8E+02 0.006 24.4 7.3 45 92-139 86-131 (171)
384 COG5537 IRR1 Cohesin [Cell div 29.3 7.5E+02 0.016 26.7 11.7 152 134-297 278-430 (740)
385 PF08045 CDC14: Cell division 29.3 5E+02 0.011 24.6 12.3 30 1-30 1-30 (257)
386 cd06561 AlkD_like A new struct 29.2 3.5E+02 0.0077 24.1 8.5 75 177-260 108-182 (197)
387 PF06628 Catalase-rel: Catalas 29.1 1.7E+02 0.0038 20.9 5.1 40 80-119 15-55 (68)
388 PF10193 Telomere_reg-2: Telom 28.9 2.8E+02 0.0061 22.4 6.8 87 455-547 4-90 (114)
389 cd03562 CID CID (CTD-Interacti 28.4 3E+02 0.0065 22.0 7.1 70 129-202 35-105 (114)
390 PF14225 MOR2-PAG1_C: Cell mor 27.9 5.4E+02 0.012 24.5 20.3 143 92-251 111-257 (262)
391 cd07354 HN_L-delphilin-R1_like 27.8 2.3E+02 0.0049 21.1 5.2 47 2-48 5-52 (80)
392 KOG4346 Uncharacterized conser 27.7 6.7E+02 0.014 27.5 10.6 55 503-559 507-561 (849)
393 PF06371 Drf_GBD: Diaphanous G 27.5 80 0.0017 28.1 3.9 30 130-159 157-186 (187)
394 PF10350 DUF2428: Putative dea 27.0 5.5E+02 0.012 24.3 14.6 156 452-620 90-252 (255)
395 PF11262 Tho2: Transcription f 27.0 2.1E+02 0.0045 27.9 6.8 67 131-201 227-295 (298)
396 PF10193 Telomere_reg-2: Telom 26.6 3.5E+02 0.0075 21.9 9.1 105 35-156 1-111 (114)
397 PF06371 Drf_GBD: Diaphanous G 26.5 1E+02 0.0022 27.3 4.4 9 4-12 11-19 (187)
398 cd03562 CID CID (CTD-Interacti 26.2 2.5E+02 0.0054 22.5 6.2 72 366-439 36-108 (114)
399 KOG1087 Cytosolic sorting prot 25.3 3.3E+02 0.0072 28.4 8.1 78 173-252 37-116 (470)
400 cd00872 PI3Ka_I Phosphoinositi 25.0 1.2E+02 0.0026 26.6 4.3 77 409-510 39-115 (171)
401 PF11841 DUF3361: Domain of un 24.3 4.7E+02 0.01 22.7 9.5 107 18-136 32-145 (160)
402 PF05997 Nop52: Nucleolar prot 24.3 5.6E+02 0.012 23.6 16.7 46 7-52 4-57 (217)
403 PF10350 DUF2428: Putative dea 23.4 6.4E+02 0.014 23.9 13.9 160 380-548 60-240 (255)
404 PHA02836 putative transmembran 23.2 76 0.0016 25.8 2.4 34 388-422 108-141 (153)
405 KOG1789 Endocytosis protein RM 23.2 9.6E+02 0.021 28.1 11.1 140 143-288 1737-1882(2235)
406 PF08324 PUL: PUL domain; Int 22.5 2E+02 0.0044 27.4 5.9 101 51-160 122-231 (268)
407 cd00870 PI3Ka_III Phosphoinosi 22.2 5.4E+02 0.012 22.5 8.2 51 81-143 72-124 (166)
408 PF12726 SEN1_N: SEN1 N termin 22.1 1.2E+03 0.025 26.4 37.3 507 24-595 25-609 (727)
409 PF01417 ENTH: ENTH domain; I 21.4 4.1E+02 0.0088 21.7 6.7 62 98-162 9-73 (125)
410 PF08620 RPAP1_C: RPAP1-like, 20.8 1.8E+02 0.004 21.2 3.8 31 132-162 40-70 (73)
411 PF09759 Atx10homo_assoc: Spin 20.5 2.9E+02 0.0062 21.8 5.1 56 148-206 3-60 (102)
412 PF14676 FANCI_S2: FANCI solen 20.3 5.7E+02 0.012 22.1 9.3 117 58-200 37-156 (158)
413 KOG2999 Regulator of Rac1, req 20.3 1.1E+03 0.023 25.3 10.9 145 6-162 86-244 (713)
No 1
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-79 Score=603.17 Aligned_cols=636 Identities=50% Similarity=0.791 Sum_probs=586.3
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHhhCcchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhc
Q 006253 3 AEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRW 82 (653)
Q Consensus 3 ~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~ 82 (653)
|++.++|.+++|||+.+|++|+.+|.+++..|+|.|+..|.+++.|.+.++..|++|++.|||.+..+..+++.+...+|
T Consensus 1 ~~~~~~le~tlSpD~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRW 80 (859)
T KOG1241|consen 1 MELLELLEKTLSPDQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRW 80 (859)
T ss_pred CcHHHHHHHHcCCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChh-HHHHHHHHHHHHHhh
Q 006253 83 LSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPH-TKQATLETLGYICEE 161 (653)
Q Consensus 83 ~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~-~~~~~l~~l~~l~~~ 161 (653)
..++.+.|++||..+++.|+++.+..++.|+++++.||..+.|.+.||++++.+.....++.+. ++++++.+++.+|+.
T Consensus 81 l~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~ 160 (859)
T KOG1241|consen 81 LQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICED 160 (859)
T ss_pred HcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999999999999999999999887655 899999999999999
Q ss_pred hcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHH
Q 006253 162 VSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFE 241 (653)
Q Consensus 162 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~ 241 (653)
.+|+.+ ..+.+.++..++++....+++..+|.+|++||.+.++|.+.+|..+..++.+|+.++..++.+|.+++.+++.
T Consensus 161 i~pevl-~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ 239 (859)
T KOG1241|consen 161 IDPEVL-EQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQ 239 (859)
T ss_pred CCHHHH-HHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHH
Confidence 988877 7888999999999998778999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHhhHHhHHH-HHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhh
Q 006253 242 CLVAISSTYYEKLAPYIQD-IFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPV 320 (653)
Q Consensus 242 ~l~~l~~~~~~~~~~~l~~-l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 320 (653)
||.+++..+|+++.+|+.+ +++..+..+++++++|..++++||+++|+++.++..++.+..+....=.+++|.+..++.
T Consensus 240 ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~ 319 (859)
T KOG1241|consen 240 CLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQD 319 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhH
Confidence 9999999999999999986 999999999999999999999999999999999887776443332210367899999999
Q ss_pred hHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCC
Q 006253 321 LVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSP 400 (653)
Q Consensus 321 l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~ 400 (653)
++|+|++.|.+++||+|+|+ |++.++|..||..++.++|++++|+++|++.+.+.+++|+.|+++.+++|++.+|..+
T Consensus 320 v~P~Ll~~L~kqde~~d~Dd--Wnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~ 397 (859)
T KOG1241|consen 320 VVPVLLELLTKQDEDDDDDD--WNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEP 397 (859)
T ss_pred hhHHHHHHHHhCCCCccccc--CcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCch
Confidence 99999999998887766544 9999999999999999999999999999999999999999999999999999999877
Q ss_pred CcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccchhhHHHHHHHH
Q 006253 401 EKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGA 480 (653)
Q Consensus 401 ~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~a 480 (653)
....++..+.+|.++..+ .|+...||.++.|++|++++.+++ +.....++..+++.++..+.|.|+|..++||+
T Consensus 398 ~~Lt~iV~qalp~ii~lm-~D~sl~VkdTaAwtlgrI~d~l~e-----~~~n~~~l~~~l~~l~~gL~DePrva~N~CWA 471 (859)
T KOG1241|consen 398 DKLTPIVIQALPSIINLM-SDPSLWVKDTAAWTLGRIADFLPE-----AIINQELLQSKLSALLEGLNDEPRVASNVCWA 471 (859)
T ss_pred hhhhHHHhhhhHHHHHHh-cCchhhhcchHHHHHHHHHhhchh-----hcccHhhhhHHHHHHHHHhhhCchHHHHHHHH
Confidence 888999999999999999 999999999999999999999986 34678899999999999999999999999999
Q ss_pred HHHHHhcccCCC---CCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Q 006253 481 LYFLAQGFEDAI---SPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMEL 557 (653)
Q Consensus 481 l~~~~~~~~~~~---~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l 557 (653)
+..+++.+.+.. +......||++.|+..|++.....+.+++++|..++++|+.+++..+..+.|....+.+.++..+
T Consensus 472 f~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl 551 (859)
T KOG1241|consen 472 FISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKL 551 (859)
T ss_pred HHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence 999997764420 12235668999999999999988775578999999999999999999999999999999999999
Q ss_pred HHHHHhhcCChhHHHhHHHHHHHHHhHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhc-cCcchhhhHHHHHHHHH
Q 006253 558 HQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAI-RSATAHEEAMLAIGALA 636 (653)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~-~~~~~~e~~~~~~~~l~ 636 (653)
.++++++..+.+|++++..+++.++.+++.+.+.+|+. +.++.+.+|..+++.++. ++..+.|+++.+++.++
T Consensus 552 ~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~------~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~ 625 (859)
T KOG1241|consen 552 DQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSD------IREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLA 625 (859)
T ss_pred HHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHcccc------chhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHH
Confidence 99999877888899888899999999999999999997 999999999999999998 56678999999999999
Q ss_pred HHhccCCccc-----hhhhcCC
Q 006253 637 YATGLWRIRY-----CLIVMGL 653 (653)
Q Consensus 637 ~~~~~~f~~y-----~~i~~~l 653 (653)
..+|.+|..| |++..||
T Consensus 626 ~~Lg~~F~kym~~f~pyL~~gL 647 (859)
T KOG1241|consen 626 ESLGKGFAKYMPAFKPYLLMGL 647 (859)
T ss_pred HHHhHhHHHHHHHHHHHHHHHh
Confidence 9999999999 6666554
No 2
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.4e-67 Score=542.36 Aligned_cols=588 Identities=23% Similarity=0.368 Sum_probs=504.1
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhCcchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhh
Q 006253 2 SAEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQR 81 (653)
Q Consensus 2 ~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~ 81 (653)
...+.+++++++|||+++|++||+.|+..... +.....|..++.+ +.++++|++|++++|+.+.+ +
T Consensus 3 ~~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~--~~~l~~L~~i~~~-~~~p~~Rq~aaVl~Rkl~~~-----------~ 68 (1075)
T KOG2171|consen 3 SAPLEQLLQQLLSPDNEVRRQAEEALETLAKT--EPLLPALAHILAT-SADPQVRQLAAVLLRKLLTK-----------H 68 (1075)
T ss_pred hhHHHHHHHHhcCCCchHHHHHHHHHHHhhcc--cchHHHHHHHHhc-CCChHHHHHHHHHHHHHHHH-----------H
Confidence 46799999999999999999999999976665 4477778888876 78999999999999999874 6
Q ss_pred ccCCChHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHh
Q 006253 82 WLSLDSSVKAQIKSFILKTLSSPA-HDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICE 160 (653)
Q Consensus 82 ~~~l~~~~~~~i~~~ll~~l~~~~-~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~ 160 (653)
|..++.+.++.||..|+.++.++. +.||++.|.+++.+|+.++|+ .||++++.|++++.|+++..|+.|+.+|..+.+
T Consensus 69 w~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~ 147 (1075)
T KOG2171|consen 69 WSRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPE 147 (1075)
T ss_pred hhcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhh
Confidence 789999999999999999988775 799999999999999999996 999999999999999999999999999999999
Q ss_pred hhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcC-ChhHH---HHHHHHHHhhhcCCcHHHH
Q 006253 161 EVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFS-NDMER---DYIMRVVCEATLSPEVKIR 236 (653)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~-~~~~~---~~il~~l~~~~~~~~~~~~ 236 (653)
.+ +..+ ++|...+.+++.++++ |++..||..|+++++.++.+.+.+.. ...++ ..++..+....++++.+..
T Consensus 148 ~~-~~~~-~~~~~~l~~lf~q~~~--d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a 223 (1075)
T KOG2171|consen 148 TF-GNTL-QPHLDDLLRLFSQTMT--DPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAA 223 (1075)
T ss_pred hh-cccc-chhHHHHHHHHHHhcc--CCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHH
Confidence 88 6666 7899999999999999 66666999999999999988752111 11111 1233344445566788888
Q ss_pred HHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhc--CChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHH
Q 006253 237 QAAFECLVAISSTYYEKLAPYIQDIFNITAKAVRE--DEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFI 314 (653)
Q Consensus 237 ~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (653)
..++++|..+++..|+.+++++..++.+++...++ .++.+|..|++++..+++..+...++ .
T Consensus 224 ~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~----------------~ 287 (1075)
T KOG2171|consen 224 KSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKK----------------L 287 (1075)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhh----------------c
Confidence 99999999999999999999999999999988764 57899999999999999875433322 2
Q ss_pred HhhhhhhHHHHHHHhhhccCC-------ccCCCccccHhhhHHHHHHHHHhhcC-CCchhchHHHHHhhhcCcchhhHHH
Q 006253 315 KHALPVLVPLLLETLLKQEED-------QDQDEGAWNIAMAGGTCLGLVARTVG-DDIVPLVMPFVEENITKQEWRQREA 386 (653)
Q Consensus 315 ~~~l~~l~~~l~~~l~~~~ed-------~~~d~~~~~~r~~a~~~L~~l~~~~~-~~~~~~l~~~l~~~l~~~~~~~r~a 386 (653)
.++..++++.++..|+..++| +.|||+.-++...|.+++++++..+| +.++|.+++.+..++.+++|+.|+|
T Consensus 288 ~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~A 367 (1075)
T KOG2171|consen 288 ALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHA 367 (1075)
T ss_pred hhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHH
Confidence 336678899999988865544 11223334677899999999999995 7889999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHh
Q 006253 387 ATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQS 466 (653)
Q Consensus 387 al~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~ 466 (653)
++++++.+++|| .+.+...++++++.++..+ +|+||+||++|+.++|++++.+. |...+.+.+.+.|.|+..
T Consensus 368 aL~Als~i~EGc-~~~m~~~l~~Il~~Vl~~l-~DphprVr~AA~naigQ~stdl~------p~iqk~~~e~l~~aL~~~ 439 (1075)
T KOG2171|consen 368 ALLALSVIAEGC-SDVMIGNLPKILPIVLNGL-NDPHPRVRYAALNAIGQMSTDLQ------PEIQKKHHERLPPALIAL 439 (1075)
T ss_pred HHHHHHHHHccc-HHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHHHHHhhhhhhc------HHHHHHHHHhccHHHHHH
Confidence 999999999999 4888899999999999999 99999999999999999999997 445677777888889888
Q ss_pred ccc--hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhcccccHH
Q 006253 467 MKD--VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAP 544 (653)
Q Consensus 467 l~d--~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 544 (653)
+.+ +++|+.+|+.++.++.+.+. ++.+.||++.+|+.++..+..+. .+.+++.++.+|++++...+..|.|
T Consensus 440 ld~~~~~rV~ahAa~al~nf~E~~~-----~~~l~pYLd~lm~~~l~~L~~~~--~~~v~e~vvtaIasvA~AA~~~F~p 512 (1075)
T KOG2171|consen 440 LDSTQNVRVQAHAAAALVNFSEECD-----KSILEPYLDGLMEKKLLLLLQSS--KPYVQEQAVTAIASVADAAQEKFIP 512 (1075)
T ss_pred hcccCchHHHHHHHHHHHHHHHhCc-----HHHHHHHHHHHHHHHHHHHhcCC--chhHHHHHHHHHHHHHHHHhhhhHh
Confidence 886 68999999999999998864 68899999999997777776665 4789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHhHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHH---hccC
Q 006253 545 MVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVF---AIRS 621 (653)
Q Consensus 545 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~l~~~l---~~~~ 621 (653)
|++.+||.+.+.+.+. ++++ ...+|+..++|++.++.++|++. |.|++.++++.++..- ...+
T Consensus 513 Y~d~~Mp~L~~~L~n~--------~~~d-~r~LrgktmEcisli~~AVGke~-----F~~~a~eliqll~~~~~~~~~~d 578 (1075)
T KOG2171|consen 513 YFDRLMPLLKNFLQNA--------DDKD-LRELRGKTMECLSLIARAVGKEK-----FLPLAEELIQLLLELQGSDQDDD 578 (1075)
T ss_pred HHHHHHHHHHHHHhCC--------Cchh-hHHHHhhHHHHHHHHHHHhhhhh-----hhHhHHHHHHHHHhhcccchhhc
Confidence 9999999999988873 2222 23689999999999999999876 9999999999998884 3346
Q ss_pred cchhhhHHHHHHHHHHHhccCCccc-hhhhcCC
Q 006253 622 ATAHEEAMLAIGALAYATGLWRIRY-CLIVMGL 653 (653)
Q Consensus 622 ~~~~e~~~~~~~~l~~~~~~~f~~y-~~i~~~l 653 (653)
+..++..+.+|++|++++|++|.|| |.++|.|
T Consensus 579 d~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl 611 (1075)
T KOG2171|consen 579 DPLRSYMIAFWARMCRILGDDFAPFLPVVMPPL 611 (1075)
T ss_pred cccHHHHHHHHHHHHHHhchhhHhHHHHHhHHH
Confidence 6788999999999999999999999 9998864
No 3
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.4e-68 Score=511.65 Aligned_cols=546 Identities=24% Similarity=0.433 Sum_probs=484.4
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHhhCcchHHHHHHHHHhcC-CCChhHHHHHHHHHhhhcchhhhhhHHHhhhh
Q 006253 3 AEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVND-EKPVESRKLAGLILKNALDAKEQHRKFELVQR 81 (653)
Q Consensus 3 ~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~-~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~ 81 (653)
+++.++|++.+|||+++|+.+...+.+++.. |+|-.+|+-+|... +.+..+|..|+.+|||.++. +
T Consensus 13 ~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~--pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~-----------~ 79 (885)
T KOG2023|consen 13 QQLAQLLKNSQSPNSETRNNVQEKLEQFNLF--PDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRG-----------H 79 (885)
T ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHHhcc--cchhceeeEEEecccccchhHHHHhhhhHhccccc-----------c
Confidence 4789999999999999999999999999886 99999999888753 45788999999999999985 4
Q ss_pred ccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhh
Q 006253 82 WLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEE 161 (653)
Q Consensus 82 ~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~ 161 (653)
|..++++.+.++|..+++++.+.++-||...+-++.+|+...+- ..||+++|.|.+++.+++....++|+.+|..+|+.
T Consensus 80 ~~~~~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~-~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcED 158 (885)
T KOG2023|consen 80 YNSIPSEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGL-QHWPELLPQLCELLDSPDYNTCEGAFGALQKICED 158 (885)
T ss_pred ccCCChHHHHHHHHHHHhhccCchHHHHhhhhheeeeeeccccc-ccchhHHHHHHHHhcCCcccccchhHHHHHHHHhh
Confidence 67788899999999999999999999999999999999987643 69999999999999999999999999999999998
Q ss_pred hcccccch----hhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHH
Q 006253 162 VSSDAVEQ----DHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQ 237 (653)
Q Consensus 162 ~~~~~~~~----~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~ 237 (653)
. ++.++. .-++.++|.+++.++ .+++.+|..|+.|+..++......+- ...+.+++.++.+.+++++++|+
T Consensus 159 s-a~~lds~~~~rpl~~mipkfl~f~~--h~spkiRs~A~~cvNq~i~~~~qal~--~~iD~Fle~lFalanD~~~eVRk 233 (885)
T KOG2023|consen 159 S-AQFLDSDVLTRPLNIMIPKFLQFFK--HPSPKIRSHAVGCVNQFIIIQTQALY--VHIDKFLEILFALANDEDPEVRK 233 (885)
T ss_pred h-HHHHhhhcccCchHHhHHHHHHHHh--CCChhHHHHHHhhhhheeecCcHHHH--HHHHHHHHHHHHHccCCCHHHHH
Confidence 7 555532 346789999999999 78999999999999997653322211 13478999999999999999999
Q ss_pred HHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhh
Q 006253 238 AAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHA 317 (653)
Q Consensus 238 ~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (653)
.+|..|.-+.+..++.+.|++..+++++++..++.|++|...|.+||.++++.. -|.....++
T Consensus 234 ~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqp-----------------i~~~~L~p~ 296 (885)
T KOG2023|consen 234 NVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQP-----------------ICKEVLQPY 296 (885)
T ss_pred HHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCc-----------------CcHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999842 266788999
Q ss_pred hhhhHHHHHHHhhhccCC----------------------------------------cc----CCC---ccccHhhhHH
Q 006253 318 LPVLVPLLLETLLKQEED----------------------------------------QD----QDE---GAWNIAMAGG 350 (653)
Q Consensus 318 l~~l~~~l~~~l~~~~ed----------------------------------------~~----~d~---~~~~~r~~a~ 350 (653)
+++++|+|+..|.+.|+| ++ ||| .+|+.|++.+
T Consensus 297 l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSA 376 (885)
T KOG2023|consen 297 LDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSA 376 (885)
T ss_pred HHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccH
Confidence 999999999988753211 00 111 2599999999
Q ss_pred HHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHH
Q 006253 351 TCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTT 430 (653)
Q Consensus 351 ~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a 430 (653)
.+|+.++..+|++++|.++|++.+.+.+.+|.+|+|++.++|+|++|| .+.+.++++.++|.++..| .|..|.||..+
T Consensus 377 AaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGc-M~g~~p~LpeLip~l~~~L-~DKkplVRsIT 454 (885)
T KOG2023|consen 377 AALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGC-MQGFVPHLPELIPFLLSLL-DDKKPLVRSIT 454 (885)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHH-hhhcccchHHHHHHHHHHh-ccCccceeeee
Confidence 999999999999999999999999999999999999999999999999 5889999999999999999 99999999999
Q ss_pred HHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc-hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHH
Q 006253 431 AWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQAL 509 (653)
Q Consensus 431 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L 509 (653)
||.|++|+.|.... ....|+.+++..++..+-| |++|+++||+|+..+-+.-+ ..+.||+..|++.|
T Consensus 455 CWTLsRys~wv~~~------~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~------~eLVp~l~~IL~~l 522 (885)
T KOG2023|consen 455 CWTLSRYSKWVVQD------SRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAG------EELVPYLEYILDQL 522 (885)
T ss_pred eeeHhhhhhhHhcC------ChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcc------chhHHHHHHHHHHH
Confidence 99999999999753 2568999999999999887 89999999999999988753 56999999999999
Q ss_pred HHhccccccchhchHHHHHHHHHHHHHhccccc--HHHHHHHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHhHHHH
Q 006253 510 LTVTHREDAGESRLRTAAYETLNEVVRCSTDET--APMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQV 587 (653)
Q Consensus 510 ~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~--~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~ 587 (653)
...++..+ .++++ ..++++|+++.++|... ..|++.++|++++.|+.. +++|++.+. +++|++.
T Consensus 523 ~~af~kYQ--~KNLl-ILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~l------sd~DKdLfP-----LLEClSs 588 (885)
T KOG2023|consen 523 VFAFGKYQ--KKNLL-ILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELL------SDSDKDLFP-----LLECLSS 588 (885)
T ss_pred HHHHHHHh--hccee-hHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhc------CcccchHHH-----HHHHHHH
Confidence 99999887 46666 79999999999999764 458999999999999985 677887554 8999999
Q ss_pred HHHHhCCCcchhhHhhHhHHHHHHHHHHHHh
Q 006253 588 IIQKLGSSEQTKYVFMQYADQMMGLFLRVFA 618 (653)
Q Consensus 588 i~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~ 618 (653)
++.++|.. |.||++++++.++.++.
T Consensus 589 ia~AL~~g------F~P~~~~Vy~Rc~~il~ 613 (885)
T KOG2023|consen 589 IASALGVG------FLPYAQPVYQRCFRILQ 613 (885)
T ss_pred HHHHHhcc------ccccCHHHHHHHHHHHH
Confidence 99999999 99999999999988887
No 4
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=100.00 E-value=6.4e-64 Score=476.99 Aligned_cols=630 Identities=31% Similarity=0.465 Sum_probs=549.3
Q ss_pred HHHHHHHH-hcCCChHHHHHHHHHHHHHHhhCcchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhc
Q 006253 4 EVTQILLN-AQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRW 82 (653)
Q Consensus 4 ~l~~ll~~-~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~ 82 (653)
+|.++.++ .+|||+.+|..||.+|.+++..++..|+..+.+.+++.+..++.|..|+++|||.+..+.+.++.++...|
T Consensus 5 ef~~l~~n~vLspD~n~rl~aE~ql~~l~~~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW 84 (858)
T COG5215 5 EFRCLGKNHVLSPDPNARLRAEAQLLELQSGDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRW 84 (858)
T ss_pred HHHHHHhcccCCCCCCccccHHHHHHHhccccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhh
Confidence 56666666 59999999999999999999989999999999999998889999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCCh-hHHHHHHHHHHHHHhh
Q 006253 83 LSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPP-HTKQATLETLGYICEE 161 (653)
Q Consensus 83 ~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~-~~~~~~l~~l~~l~~~ 161 (653)
..++.|.|+++|...++.|+++.+...+.++++++.||+.+.|++.||+++..+.....++.| ..+..++.+++.+|+.
T Consensus 85 ~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces 164 (858)
T COG5215 85 LGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCES 164 (858)
T ss_pred ccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999989999999999999988765 5678899999999998
Q ss_pred hcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHH
Q 006253 162 VSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFE 241 (653)
Q Consensus 162 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~ 241 (653)
..|+.+ ....+.++-.++.+-....++..+|.+|++||...+.+++++|..+..++.+++.++...+.++.++..+++.
T Consensus 165 ~~Pe~l-i~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafg 243 (858)
T COG5215 165 EAPEDL-IQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFG 243 (858)
T ss_pred cCHHHH-HHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHH
Confidence 877555 2334444444444443337899999999999999999999999988889999999999999999999999999
Q ss_pred HHHHHHHHhHHhhHHhHHH-HHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhh
Q 006253 242 CLVAISSTYYEKLAPYIQD-IFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPV 320 (653)
Q Consensus 242 ~l~~l~~~~~~~~~~~l~~-l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 320 (653)
||.++...+++++.+|+++ +...+.+.+++.+++++.++++||+++|+++.+..-+... -...+.+..+|.......
T Consensus 244 Cl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~--~pe~p~qn~~fa~aav~d 321 (858)
T COG5215 244 CLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKY--LPEVPAQNHGFARAAVAD 321 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhh--cccCchhhcchHHHHHHH
Confidence 9999999999999999985 7788889999999999999999999999987654322110 011222455788888888
Q ss_pred hHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCC
Q 006253 321 LVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSP 400 (653)
Q Consensus 321 l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~ 400 (653)
++|.+++.+...++|+++|| |++..+|..||..++...|+.++..++.++.+++.+++|..|+++.+++|++.+|...
T Consensus 322 vlP~lL~LL~~q~ed~~~Dd--Wn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~ 399 (858)
T COG5215 322 VLPELLSLLEKQGEDYYGDD--WNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCE 399 (858)
T ss_pred HHHHHHHHHHhcCCCccccc--cchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccH
Confidence 99999999998888776554 9999999999999999999999999999999999999999999999999999999766
Q ss_pred CcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccchhhHHHHHHHH
Q 006253 401 EKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGA 480 (653)
Q Consensus 401 ~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~a 480 (653)
....+++++.+|.|.... .|+...|+.+++||+|+++++..... ....++......++.++.|+|++..+++++
T Consensus 400 ~~lT~~V~qalp~i~n~m-~D~~l~vk~ttAwc~g~iad~va~~i-----~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~ 473 (858)
T COG5215 400 DCLTKIVPQALPGIENEM-SDSCLWVKSTTAWCFGAIADHVAMII-----SPCGHLVLEVSASLIGLMDCPFRSINCSWR 473 (858)
T ss_pred HHHHhhHHhhhHHHHHhc-ccceeehhhHHHHHHHHHHHHHHHhc-----CccccccHHHHHHHhhhhccchHHhhhHHH
Confidence 677889999999999999 99999999999999999999887532 245678888889988899999999999999
Q ss_pred HHHHHhcccCCC-CCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Q 006253 481 LYFLAQGFEDAI-SPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQ 559 (653)
Q Consensus 481 l~~~~~~~~~~~-~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~ 559 (653)
+.++++.+.+.. ..++.+.++++.|+..|++..+...+ +.+.|..++++|++++..+++.+.+.+..+...+++++.+
T Consensus 474 ~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~N-e~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~ 552 (858)
T COG5215 474 KENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALN-ESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDE 552 (858)
T ss_pred HHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Confidence 999998875420 23677889999999999988776544 5789999999999999999999999999999999999998
Q ss_pred HHHh--hcCChhHHHhHHHHHHHHHhHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccC-cchhhhHHHHHHHHH
Q 006253 560 TLEA--QKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRS-ATAHEEAMLAIGALA 636 (653)
Q Consensus 560 ~~~~--~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~-~~~~e~~~~~~~~l~ 636 (653)
++.. +..+.+|.....+++...+..+..+++..+++ +.+..+++|+.+++.|...+ ..+.++++.+|+++.
T Consensus 553 ~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~------ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~ 626 (858)
T COG5215 553 CISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRD------IEDVEDQLMELFIRILESTKPTTAFGDVYTAISALS 626 (858)
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCC------cccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHH
Confidence 8763 33556676667789999999999999999998 89999999999999999874 456789999999999
Q ss_pred HHhccCCccc-hhhhc
Q 006253 637 YATGLWRIRY-CLIVM 651 (653)
Q Consensus 637 ~~~~~~f~~y-~~i~~ 651 (653)
..+|++|..| |.++|
T Consensus 627 ~sl~e~Fe~y~~~fiP 642 (858)
T COG5215 627 TSLEERFEQYASKFIP 642 (858)
T ss_pred HHHHHHHHHHHhhhhH
Confidence 9999999999 44444
No 5
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.3e-37 Score=314.38 Aligned_cols=572 Identities=17% Similarity=0.249 Sum_probs=421.7
Q ss_pred ChhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhCcchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhh
Q 006253 1 MSAEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQ 80 (653)
Q Consensus 1 m~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~ 80 (653)
|.+.+.+++.++.++|+..|+.||++|+++.++ |+|+..|++|+.+.+.+..+|+.|+++|||.|.+.|+.+... .
T Consensus 2 d~~~l~~~~~~T~d~d~~~R~~AE~~L~q~~K~--pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~--g 77 (1010)
T KOG1991|consen 2 DLQSLLQIFRATIDSDAKERKAAEQQLNQLEKQ--PGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAP--G 77 (1010)
T ss_pred ChHHHHHHHHHhcCCChHHHHHHHHHHHHhhcC--CcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCC--C
Confidence 467899999999999999999999999999999 999999999999888899999999999999999999875311 1
Q ss_pred hccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHh
Q 006253 81 RWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICE 160 (653)
Q Consensus 81 ~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~ 160 (653)
.=..+.++.|..+|+.++..+...+..+|.+...++..|...++| .+||++++.+...+++++.....+|+.|+..+++
T Consensus 78 ~~~~I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p-~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k 156 (1010)
T KOG1991|consen 78 RPFGIPEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKADYP-EQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFK 156 (1010)
T ss_pred CcCCCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCc-ccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHH
Confidence 223488999999999999999999999999999999999999999 5999999999999999999999999999999999
Q ss_pred hhcc------cccchhhHhHHHHHH----HhcccCC-CCCHHHHHHHHHHHHHHHHhh-hhhcCChhHHHHHHHHHHhhh
Q 006253 161 EVSS------DAVEQDHVNKILTAV----VQGMNAS-ESNNDVRLAATRALYNALGFA-QANFSNDMERDYIMRVVCEAT 228 (653)
Q Consensus 161 ~~~~------~~~~~~~~~~l~~~l----~~~l~~~-~~~~~vr~~a~~~l~~~~~~~-~~~~~~~~~~~~il~~l~~~~ 228 (653)
..+- +.+ ...+..++|.+ .+.+... ..+.++.+..++.+..++.+- +..+........++..+...+
T Consensus 157 ~ye~k~~eeR~~l-~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~ 235 (1010)
T KOG1991|consen 157 TYEWKKDEERQPL-GEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSIL 235 (1010)
T ss_pred HHhhccccccccH-HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHH
Confidence 7631 112 12334444444 4445421 335567788888888877652 322222222344555444433
Q ss_pred c-----------------CCcHHHHHHHHHHHHHHHHHhHHh---------hHH-----hHHHHHHHHHHHhh---c---
Q 006253 229 L-----------------SPEVKIRQAAFECLVAISSTYYEK---------LAP-----YIQDIFNITAKAVR---E--- 271 (653)
Q Consensus 229 ~-----------------~~~~~~~~~~~~~l~~l~~~~~~~---------~~~-----~l~~l~~~~~~~~~---~--- 271 (653)
+ .+.++.++.++..|.++.+.+++- |.. +.+.+....++.+. .
T Consensus 236 ~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~y 315 (1010)
T KOG1991|consen 236 NRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLY 315 (1010)
T ss_pred cCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2 234567889999999999987531 121 22333343333332 1
Q ss_pred CChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHH-HHHHHhhhccCCcc---CC--------
Q 006253 272 DEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVP-LLLETLLKQEEDQD---QD-------- 339 (653)
Q Consensus 272 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~l~~~l~~~~ed~~---~d-------- 339 (653)
..+++-..++.++....... ..+++++|++..++. +++..|+..|+|+| +|
T Consensus 316 ls~rvl~~~l~fl~~~Vs~~-----------------~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~ 378 (1010)
T KOG1991|consen 316 LSDRVLYYLLNFLEQCVSHA-----------------STWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKK 378 (1010)
T ss_pred CCHHHHHHHHHHHHHhccHH-----------------HHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhc
Confidence 34566666666666555432 234677888877664 56677777666542 11
Q ss_pred ----CccccHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhc------C--cchhhHHHHHHHHHHhhcCCCCC-cchHH
Q 006253 340 ----EGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENIT------K--QEWRQREAATYAFGSILEGPSPE-KLVPL 406 (653)
Q Consensus 340 ----~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~------~--~~~~~r~aal~~l~~i~~~~~~~-~~~~~ 406 (653)
++-++++.+|..++..+++.-|++.+|.+++++.+.++ . .+++.+++|+..+|++++-..+. .++..
T Consensus 379 ~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~ 458 (1010)
T KOG1991|consen 379 FDIFEDGYSPDTAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQ 458 (1010)
T ss_pred CchhcccCCCcHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHH
Confidence 12357888999999999999999999999999888776 2 35788999999999998654322 22333
Q ss_pred HHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHHh-hhccCCCCccccCccchHHHHHHHHHhcc-c-hhhHHHHHHHHHH
Q 006253 407 VNI-ALNFMLTALMQDPNNHVKDTTAWTLGRMFE-FLHGSTLETPIINQGNCQQIISVLLQSMK-D-VPNVAEKACGALY 482 (653)
Q Consensus 407 l~~-l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~-~~~~~~~~~~~~~~~~~~~il~~l~~~l~-d-~~~v~~~a~~al~ 482 (653)
+.. +.++++..+ +++.-.+|.+|||++++++. .+. ....+...+....+++. | +-.|+..|+.|+.
T Consensus 459 mE~flv~hVfP~f-~s~~g~Lrarac~vl~~~~~~df~---------d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq 528 (1010)
T KOG1991|consen 459 MEYFLVNHVFPEF-QSPYGYLRARACWVLSQFSSIDFK---------DPNNLSEALELTHNCLLNDNELPVRVEAALALQ 528 (1010)
T ss_pred HHHHHHHHhhHhh-cCchhHHHHHHHHHHHHHHhccCC---------ChHHHHHHHHHHHHHhccCCcCchhhHHHHHHH
Confidence 443 467788889 99999999999999999994 443 46788888888889888 5 4689999999999
Q ss_pred HHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHH
Q 006253 483 FLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLE 562 (653)
Q Consensus 483 ~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 562 (653)
.|+.+... .+..+.++++++|+.|+++.+..+++ ....++..++...+++..||...++..+.+.+.++++
T Consensus 529 ~fI~~~~~---~~e~~~~hvp~~mq~lL~L~ne~End------~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~ 599 (1010)
T KOG1991|consen 529 SFISNQEQ---ADEKVSAHVPPIMQELLKLSNEVEND------DLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQ 599 (1010)
T ss_pred HHHhcchh---hhhhHhhhhhHHHHHHHHHHHhcchh------HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHh
Confidence 99998753 25669999999999999999987642 3567888999999999999999999999998888876
Q ss_pred h---hcCChhHHHhHHHHHHHHHhHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhcc
Q 006253 563 A---QKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIR 620 (653)
Q Consensus 563 ~---~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~ 620 (653)
. ...+++|+.. .-..++.+|.++..++.+. ++++...-+.+++.+-..|...
T Consensus 600 ~~~~~~~~~ddk~i---aA~GiL~Ti~Til~s~e~~---p~vl~~le~~~l~vi~~iL~~~ 654 (1010)
T KOG1991|consen 600 TSEDEDESDDDKAI---AASGILRTISTILLSLENH---PEVLKQLEPIVLPVIGFILKND 654 (1010)
T ss_pred ccCCCCccchHHHH---HHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHh
Confidence 4 2222334421 2224788888888888765 3334344444555555555543
No 6
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-30 Score=259.52 Aligned_cols=588 Identities=15% Similarity=0.200 Sum_probs=415.1
Q ss_pred ChhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhCcchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhh
Q 006253 1 MSAEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQ 80 (653)
Q Consensus 1 m~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~ 80 (653)
|+ .+.+.|.++++||+.+|+.||+.|+....+ ++|...+++++.+++.++++|.+|++++||+++++|.+..+.
T Consensus 4 le-~l~~~l~qTl~pdps~rk~aEr~L~~~e~q--~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~--- 77 (960)
T KOG1992|consen 4 LE-TLANYLLQTLSPDPSVRKPAERALRSLEGQ--QNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDS--- 77 (960)
T ss_pred HH-HHHHHHHhcCCCCCccCchHHHHHHHhccC--CCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCC---
Confidence 44 788999999999999999999999999888 999999999999988899999999999999999999764422
Q ss_pred hccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHh
Q 006253 81 RWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICE 160 (653)
Q Consensus 81 ~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~ 160 (653)
-..+.++.++.||..++..|.+....+..+++.+++.|++.++| +.||.++|.+...++++|-.+-.+.+..-..+.+
T Consensus 78 -~~~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP-~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFk 155 (960)
T KOG1992|consen 78 -PIKIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFP-DKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFK 155 (960)
T ss_pred -ccccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccc-hhhHHHHHHHHhhccccchHHHHHHHHHHHHHHH
Confidence 23588999999999999999999999999999999999999999 6999999999999999999988888888888988
Q ss_pred hhcccccchh--------------hHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHH-----h-------hhhhcCCh
Q 006253 161 EVSSDAVEQD--------------HVNKILTAVVQGMNASESNNDVRLAATRALYNALG-----F-------AQANFSND 214 (653)
Q Consensus 161 ~~~~~~~~~~--------------~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~-----~-------~~~~~~~~ 214 (653)
.+++..-+.. -+..++....+.....+.+.. +++.+...+- | +++-|++
T Consensus 156 r~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~----~l~~lf~vlll~~klfysLn~QDiPEFFEd- 230 (960)
T KOG1992|consen 156 RYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAA----ALNILFGVLLLICKLFYSLNFQDIPEFFED- 230 (960)
T ss_pred hcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchh----HHHHHHHHHHHHHHHHHhhhcccchHHHHh-
Confidence 8754321110 111222222222221122222 3333322111 1 1222221
Q ss_pred hHHHHHHHHHHhhhc-------CCc------HHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhcCC-----hhH
Q 006253 215 MERDYIMRVVCEATL-------SPE------VKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDE-----EPV 276 (653)
Q Consensus 215 ~~~~~il~~l~~~~~-------~~~------~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~-----~~~ 276 (653)
+.+.+|..+..+++ .++ .+++..+|+.+.-.+..+.+.+.+++++++..+|..+.+.. +..
T Consensus 231 -nm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~L 309 (960)
T KOG1992|consen 231 -NMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYL 309 (960)
T ss_pred -hHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHH
Confidence 23567777766554 111 35788899999999999999999999999999998877532 345
Q ss_pred HHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhh-hHHHHHHHhhhccCCcc--------------CCCc
Q 006253 277 ALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPV-LVPLLLETLLKQEEDQD--------------QDEG 341 (653)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~l~~~l~~~~ed~~--------------~d~~ 341 (653)
...|+.|+..++.... |.+-.+ ..+....+.++ ++|.+. -.++|+| +.-|
T Consensus 310 vs~Al~FLt~V~~r~~-----y~~~F~------~~~vl~~i~e~VvlpN~~----lR~eDeElFED~pleYiRRDlEGsD 374 (960)
T KOG1992|consen 310 VSKALQFLTSVSRRPH-----YAELFE------GENVLAQICEKVVLPNLI----LREEDEELFEDNPLEYIRRDLEGSD 374 (960)
T ss_pred HHHHHHHHHHHHhhhh-----hHhhhc------chHHHHHHHHhhcccccc----cchhhHHHhccCHHHHHHHhcccCC
Confidence 6678999999886421 110000 01222222222 122221 1122211 1113
Q ss_pred cccHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhc------CcchhhHHHHHHHHHHhhcC-------CC-CCc---ch
Q 006253 342 AWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENIT------KQEWRQREAATYAFGSILEG-------PS-PEK---LV 404 (653)
Q Consensus 342 ~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~------~~~~~~r~aal~~l~~i~~~-------~~-~~~---~~ 404 (653)
..+-|++|.+.+..++..+...+.+.+-..+...+. +.+|+.++.++..+.+++-. +. ... +.
T Consensus 375 vdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~ 454 (960)
T KOG1992|consen 375 VDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVV 454 (960)
T ss_pred cchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHH
Confidence 346788999999999999977777766666665555 56799999999888776642 11 111 12
Q ss_pred HH-HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc-hhhHHHHHHHHHH
Q 006253 405 PL-VNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALY 482 (653)
Q Consensus 405 ~~-l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~ 482 (653)
.| ..++.|.+.+.- ..++|.+|..+++-+--+-... .+.++-..+|.++..+.. ...|...|+.++.
T Consensus 455 ~Ff~~~ilp~L~s~~-vn~~pilka~aIKy~~~FR~ql----------~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiE 523 (960)
T KOG1992|consen 455 DFFANQILPDLLSPN-VNEFPILKADAIKYIYTFRNQL----------GKEHLMALLPRLIRFLEAESRVVHSYAAIAIE 523 (960)
T ss_pred HHHHHHhhHHhccCc-cccccchhhcccceeeeecccC----------ChHHHHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence 22 334555554322 3578889999887766665544 467888999999999986 6778889999999
Q ss_pred HHHhcccC---CCCCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Q 006253 483 FLAQGFED---AISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQ 559 (653)
Q Consensus 483 ~~~~~~~~---~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~ 559 (653)
.+....++ .++.+..+.||...++..|++.+..++. .--+..+.++..++........|+...+++.+.+.+..
T Consensus 524 kil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~---~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~ 600 (960)
T KOG1992|consen 524 KLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGK---AENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEE 600 (960)
T ss_pred hccccccCccccccchhhcchHHHHHHHHHHHhccCCcc---cccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHH
Confidence 88866554 1355788999999999999988865542 12246788999999999888889999988888887766
Q ss_pred HHHhhcCChhHHHhHHHHHHHHHhHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHh
Q 006253 560 TLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYAT 639 (653)
Q Consensus 560 ~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~e~~~~~~~~l~~~~ 639 (653)
...++ .++ ..-+.+++.++.+.+..++. +.+..+.+...+++.+-..|..+-.+..-.++-.++.+++..
T Consensus 601 v~KNP----s~P----~fnHYLFEsi~~li~~t~~~--~~~~vs~~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~ 670 (960)
T KOG1992|consen 601 VSKNP----SNP----QFNHYLFESIGLLIRKTCKA--NPSAVSSLEEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHS 670 (960)
T ss_pred HhcCC----CCc----hhHHHHHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 54432 233 23346788888888887765 234466677788887778887654455557888888888888
Q ss_pred cc
Q 006253 640 GL 641 (653)
Q Consensus 640 ~~ 641 (653)
+.
T Consensus 671 ~~ 672 (960)
T KOG1992|consen 671 SG 672 (960)
T ss_pred CC
Confidence 77
No 7
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-30 Score=257.63 Aligned_cols=596 Identities=15% Similarity=0.212 Sum_probs=394.7
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhhCcchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhccC
Q 006253 5 VTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLS 84 (653)
Q Consensus 5 l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~ 84 (653)
+.+.|+++.|||+.+++.||++|++..++ |||...|..+..|.+.+.++|.+|.++|||.+++.|+.. ..| .
T Consensus 2 vvq~Lq~Ats~d~~v~k~AE~qLr~WEtq--PGF~~~L~sI~l~~t~dv~vRWmAviyfKNgIdryWR~~-----~~~-s 73 (978)
T KOG1993|consen 2 VVQVLQQATSQDHIVVKPAEAQLRQWETQ--PGFFSKLYSIFLSKTNDVSVRWMAVIYFKNGIDRYWRRN-----TKM-S 73 (978)
T ss_pred HHHHHHHhcCCCcccchhHHHHHHhhccC--CcHHHHHHHHHhccccceeeeeehhhhHhcchhHHhhcC-----Ccc-c
Confidence 57899999999999999999999999999 999999999999988899999999999999999999743 233 4
Q ss_pred CChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCC----ChhHHHHHHHHHHHHHh
Q 006253 85 LDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQL----PPHTKQATLETLGYICE 160 (653)
Q Consensus 85 l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~----~~~~~~~~l~~l~~l~~ 160 (653)
+++|.|..||..++.....+++.+..+.|.++++||+.++| ..||+++|.|.+.+++. |.......+..+..+.+
T Consensus 74 l~~EEK~~iR~~Ll~~~~E~~nQlaiQ~AvlisrIARlDyP-reWP~Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ilK 152 (978)
T KOG1993|consen 74 LPPEEKDFIRCNLLLHSDEENNQLAIQNAVLISRIARLDYP-REWPDLFPDLLGQLQSSLGTGDSLVQHRILITLHHILK 152 (978)
T ss_pred CCHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhcCCC-ccchhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 99999999999999999988999999999999999999999 59999999999998776 88888889999999988
Q ss_pred hhcccccc--hhhHhHHHHHHHh--------c--------ccCCCC-----CHHHHHHHHHHHHHHHHhhhhhcCChhHH
Q 006253 161 EVSSDAVE--QDHVNKILTAVVQ--------G--------MNASES-----NNDVRLAATRALYNALGFAQANFSNDMER 217 (653)
Q Consensus 161 ~~~~~~~~--~~~~~~l~~~l~~--------~--------l~~~~~-----~~~vr~~a~~~l~~~~~~~~~~~~~~~~~ 217 (653)
.+....+. +..+.++.|.+.. . .++.+. ....-..+++++.+++-+.-.+.......
T Consensus 153 ~Lat~RL~a~rk~F~el~~~I~~~l~~~l~s~lt~~~lq~~ss~~ea~~LsalQ~s~~~lk~lRrlvv~G~~~P~kse~~ 232 (978)
T KOG1993|consen 153 ALATKRLLADRKAFYELAPEILTILAPILWSSLTMMFLQSVSSIKEATLLSALQRSYLTLKVLRRLVVFGFQNPSKSEFF 232 (978)
T ss_pred HHHHhHHhhhhHHHHHHhHHHHHHHHHHHhcchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhHH
Confidence 87544332 2223333332222 1 111000 11122345666666665432221111111
Q ss_pred H---HHHHH----HHhhhc----CCcHH----HHHHHHHHHHHHHHHhHHhhHH--hHHHHHHHHHHHhhcCC-------
Q 006253 218 D---YIMRV----VCEATL----SPEVK----IRQAAFECLVAISSTYYEKLAP--YIQDIFNITAKAVREDE------- 273 (653)
Q Consensus 218 ~---~il~~----l~~~~~----~~~~~----~~~~~~~~l~~l~~~~~~~~~~--~l~~l~~~~~~~~~~~~------- 273 (653)
. +++.. +..... ....+ ......+.+..+...++-.|.. ..+..+++.+..+.+..
T Consensus 233 eRl~~F~e~~~~~~~~~~s~~~~~vk~di~ek~~i~l~K~l~~l~~rhpfsF~~~~~~~~~l~f~~~yIf~~~~~l~~~~ 312 (978)
T KOG1993|consen 233 ERLLQFLELHQRKLLSSLSTGTQSVKSDILEKFCIKLMKVLAFLFNRHPFSFSFYSPCPVKLEFSIDYIFDEYDFLGQIS 312 (978)
T ss_pred HHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHhcCCCcccccccccceeeehhhhhhhcccchhcccc
Confidence 1 12221 111111 11112 2223344555556555555554 33445555555444321
Q ss_pred ------hhHHHHHHHhHHHhhHHHHh----hhhhcCCCCCCC-CCC---chhhHHHhhhhhhHHHHHHH--------hhh
Q 006253 274 ------EPVALQAIEFWSSVCDEEID----ILEEYGGDFSGD-SDI---PCFYFIKHALPVLVPLLLET--------LLK 331 (653)
Q Consensus 274 ------~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~---~~~~~~~~~l~~l~~~l~~~--------l~~ 331 (653)
++...+++..+..+....-. ..+...+..... ++. ....+..+-+..+...++.+ +..
T Consensus 313 ~~~~~fe~f~iq~l~mlK~vm~~~~~~~s~~~k~~~d~~~~~~~~a~~i~~sFl~~~rIt~lcd~Lvt~YflLt~~eLEe 392 (978)
T KOG1993|consen 313 GHLSSFEEFFIQCLNMLKKVMIMKNYKFSLTIKEFCDTKDEHLETAQKIYNSFLTDNRITNLCDLLVTHYFLLTEEELEE 392 (978)
T ss_pred cccccHHHHHHHHHHHHHHHHHhhcccccccchhcccCccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 34445566555543321100 000000000000 000 00011122223333443332 122
Q ss_pred ccCCcc-----CCCccc--cHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCc---------chhhHHHHHHHHHHhh
Q 006253 332 QEEDQD-----QDEGAW--NIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQ---------EWRQREAATYAFGSIL 395 (653)
Q Consensus 332 ~~ed~~-----~d~~~~--~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~---------~~~~r~aal~~l~~i~ 395 (653)
+.+|++ ++..+| ++|.+|...+..+-...++-+.|.++..+.+..+.. ..-.+.|++.++|..+
T Consensus 393 W~~dPE~~~~Eq~~~dwey~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a 472 (978)
T KOG1993|consen 393 WTQDPEGWVLEQSGGDWEYNLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAA 472 (978)
T ss_pred HhcChHHhhhhcccccceeccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHH
Confidence 333432 222345 799999999999999999889999998885443322 1345677777777644
Q ss_pred cCCC-CCcchHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc--hh
Q 006253 396 EGPS-PEKLVPLVN-IALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD--VP 471 (653)
Q Consensus 396 ~~~~-~~~~~~~l~-~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d--~~ 471 (653)
.... .-.+...+. .++|.+- .- .+....+|++.+|.+|+++..-. ..+.-+.++..++..++| +.
T Consensus 473 ~~l~~~~dF~~Wl~~~llpEl~-~~-~~~~RiiRRRVa~ilg~Wvsvq~---------~~e~k~l~Y~a~lnLL~d~~D~ 541 (978)
T KOG1993|consen 473 YELSNILDFDKWLQEALLPELA-ND-HGNSRIIRRRVAWILGQWVSVQQ---------KLELKPLLYCAFLNLLQDQNDL 541 (978)
T ss_pred HHHHhcCCHHHHHHHhhCHHhh-hc-ccchhHHHHHHHHHHhhhhheec---------hHhHHHHHHHHHHHhcCccccc
Confidence 3321 122444333 3444433 11 34455789999999999998543 356677888888998887 46
Q ss_pred hHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhcccccHHHHHHHHH
Q 006253 472 NVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVP 551 (653)
Q Consensus 472 ~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~ 551 (653)
.|+..++.+++.+++.+. ++++.+.||++.+...+.+++...+. ...|..++..++.++...++...||...++.
T Consensus 542 vV~Ltt~~tlkl~vDD~n---F~~dsFlp~lenlf~~lfkll~~~~e--~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq 616 (978)
T KOG1993|consen 542 VVRLTTARTLKLVVDDWN---FSEDSFLPYLENLFVLLFKLLKAVEE--CDTKTSVLNLLSTLIERVSEHIAPYASTIVQ 616 (978)
T ss_pred eeehHHHHHHHHhhhhcc---CChhhhhhhHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 789999999999998765 77899999999999999999987663 4567789999999999999988999999999
Q ss_pred HHHHHHHHHHHhhcCChhHHHhHHHHHHHHHhHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccCcchhhhHHHH
Q 006253 552 LIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLA 631 (653)
Q Consensus 552 ~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~e~~~~~ 631 (653)
.+-..|+.. .+. .-+|..++.++..+.+++|..+ ..+.|++-++++.....-+.++-.+-|+++..
T Consensus 617 ~lp~LWe~s-------~~e----~lLr~alL~~L~~lV~alg~qS---~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeL 682 (978)
T KOG1993|consen 617 YLPLLWEES-------EEE----PLLRCALLATLRNLVNALGAQS---FEFYPFLYPVIELSTDPSSPEHVYLLEDGMEL 682 (978)
T ss_pred HHHHHHhhh-------ccC----cHHHHHHHHHHHHHHHHhccCC---ccchHHHHHHHHHhcCCCCCceeehhhhHHHH
Confidence 988888873 111 2478889999999999999763 11677777777766544444455678999999
Q ss_pred HHHHHHHh
Q 006253 632 IGALAYAT 639 (653)
Q Consensus 632 ~~~l~~~~ 639 (653)
|+......
T Consensus 683 W~~~L~n~ 690 (978)
T KOG1993|consen 683 WLTTLMNS 690 (978)
T ss_pred HHHHHhcc
Confidence 99876544
No 8
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-29 Score=263.69 Aligned_cols=563 Identities=19% Similarity=0.225 Sum_probs=403.9
Q ss_pred CCChHHHHHHHHHHHHHHhhCc--------chHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhccCC
Q 006253 14 SVDGTVRKQAEESLKQYQEQNL--------PGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSL 85 (653)
Q Consensus 14 s~d~~~r~~A~~~L~~~~~~~~--------~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l 85 (653)
++|+++|.-|-=.+.++..+-| ...-..|+.++.. ...+.+|+.-+-+.....+.... ..|.
T Consensus 48 ~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~lL~~~~~-E~~~~vr~k~~dviAeia~~~l~-------e~WP-- 117 (1075)
T KOG2171|consen 48 SADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSLLEIIQS-ETEPSVRHKLADVIAEIARNDLP-------EKWP-- 117 (1075)
T ss_pred CCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHhccc-------cchH--
Confidence 4688899998888776544311 2345567777776 45788888666554443322110 1354
Q ss_pred ChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCC--CCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhc
Q 006253 86 DSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPH--KQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVS 163 (653)
Q Consensus 86 ~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~--~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~ 163 (653)
.+.+.|+++.+++++..|..+..++..+....... +...++.+.+.+++++++..+|..++++++.++...+
T Consensus 118 ------ell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~ 191 (1075)
T KOG2171|consen 118 ------ELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLE 191 (1075)
T ss_pred ------HHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhc
Confidence 46788999999999999999999999998875321 2345888999999999877799999999999999873
Q ss_pred c-cccchhhHhHHHHHHHhcccC--CCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcC--CcHHHHHH
Q 006253 164 S-DAVEQDHVNKILTAVVQGMNA--SESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLS--PEVKIRQA 238 (653)
Q Consensus 164 ~-~~~~~~~~~~l~~~l~~~l~~--~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~--~~~~~~~~ 238 (653)
. ... ..++..++|.+++.+.. .+.+...-..++++|..++...+..+. .+...+++.......+ -+..+|..
T Consensus 192 ~~~~~-~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~--~~l~~ii~~~l~Ia~n~~l~~~~R~~ 268 (1075)
T KOG2171|consen 192 NNKSE-VDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLR--PHLSQIIQFSLEIAKNKELENSIRHL 268 (1075)
T ss_pred cchHH-HHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHH--HHHHHHHHHHHHHhhcccccHHHHHH
Confidence 1 112 46677888877765542 145555667788888877765443322 1235566666666654 47889999
Q ss_pred HHHHHHHHHHHhHHh---hHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCC---Cchhh
Q 006253 239 AFECLVAISSTYYEK---LAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSD---IPCFY 312 (653)
Q Consensus 239 ~~~~l~~l~~~~~~~---~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 312 (653)
+++++..+++..+.. ..++.+.+++.++..+.+.+++ +-|.+--+. .++.+..+. .++..
T Consensus 269 ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D------~ew~~~d~~--------ded~~~~~~~~A~~~lD 334 (1075)
T KOG2171|consen 269 ALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDD------DEWSNEDDL--------DEDDEETPYRAAEQALD 334 (1075)
T ss_pred HHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccc------hhhcccccc--------ccccccCcHHHHHHHHH
Confidence 999999999986643 3356778999999888754333 112221100 000000000 00111
Q ss_pred H------HHhhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCC---chhchHHHHHhhhcCcchhh
Q 006253 313 F------IKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDD---IVPLVMPFVEENITKQEWRQ 383 (653)
Q Consensus 313 ~------~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~---~~~~l~~~l~~~l~~~~~~~ 383 (653)
. -+.+++.+++.+-..+.. .+|..|++|.-+|+.+++.+++. .+|.+++.+...++|+++++
T Consensus 335 rlA~~L~g~~v~p~~~~~l~~~l~S---------~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprV 405 (1075)
T KOG2171|consen 335 RLALHLGGKQVLPPLFEALEAMLQS---------TEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRV 405 (1075)
T ss_pred HHHhcCChhhehHHHHHHHHHHhcC---------CCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHH
Confidence 1 133334444444444432 34999999999999999998864 47889999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHH
Q 006253 384 REAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVL 463 (653)
Q Consensus 384 r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l 463 (653)
|+||+.++|.++....++.-+.+-..+.|.++..+....+++|...|+.++-++++.+.+ ....+|+..+|...
T Consensus 406 r~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~------~~l~pYLd~lm~~~ 479 (1075)
T KOG2171|consen 406 RYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDK------SILEPYLDGLMEKK 479 (1075)
T ss_pred HHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcH------HHHHHHHHHHHHHH
Confidence 999999999999987544444444556667777772336789999999999999998874 35788999999955
Q ss_pred HHhcc-c-hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccc-cchhchHHHHHHHHHHHHHhcc-
Q 006253 464 LQSMK-D-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHRED-AGESRLRTAAYETLNEVVRCST- 539 (653)
Q Consensus 464 ~~~l~-d-~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~-~~~~~~~~~~~~~l~~l~~~~~- 539 (653)
+..+. + .+.|++.+..+|+.+++..+ ..+.||++.+||.|.+++.+.+ .+.+.+|-..++|++.+...+|
T Consensus 480 l~~L~~~~~~~v~e~vvtaIasvA~AA~------~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGk 553 (1075)
T KOG2171|consen 480 LLLLLQSSKPYVQEQAVTAIASVADAAQ------EKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGK 553 (1075)
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHHHHh------hhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhh
Confidence 55554 3 58899999999999999764 6799999999999999998766 2346788899999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHhHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhc
Q 006253 540 DETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAI 619 (653)
Q Consensus 540 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~ 619 (653)
+.|.|+...+++.+...-.+. ..++| ..+...+..++.+++.+|++ |.||++.+|+.+++..+.
T Consensus 554 e~F~~~a~eliqll~~~~~~~-----~~~dd-----~~~sy~~~~warmc~ilg~~------F~p~L~~Vmppl~~ta~~ 617 (1075)
T KOG2171|consen 554 EKFLPLAEELIQLLLELQGSD-----QDDDD-----PLRSYMIAFWARMCRILGDD------FAPFLPVVMPPLLKTARL 617 (1075)
T ss_pred hhhhHhHHHHHHHHHhhcccc-----hhhcc-----ccHHHHHHHHHHHHHHhchh------hHhHHHHHhHHHHHhhcc
Confidence 569999999888776643211 11223 35667889999999999999 999999999999988775
Q ss_pred c--------------------------Cc----------chhhhHHHHHHHHHHHhccCCccc
Q 006253 620 R--------------------------SA----------TAHEEAMLAIGALAYATGLWRIRY 646 (653)
Q Consensus 620 ~--------------------------~~----------~~~e~~~~~~~~l~~~~~~~f~~y 646 (653)
+ +. +-++.+..+++.++..++..|.||
T Consensus 618 ~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pY 680 (1075)
T KOG2171|consen 618 DPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKELKEAFAPY 680 (1075)
T ss_pred CCcccCcCchhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence 2 01 134467889999999999999999
No 9
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=100.00 E-value=2.1e-28 Score=247.20 Aligned_cols=576 Identities=17% Similarity=0.237 Sum_probs=395.9
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhCcchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhh
Q 006253 2 SAEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQR 81 (653)
Q Consensus 2 ~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~ 81 (653)
.|.|+.+|.+.+|+|+.+|.+||.+|.++... ++|...|..++.++..+-+.|+.|+++|++++..+|++..+.+.
T Consensus 3 ~~~ii~~L~~~ls~d~~vr~~AE~~l~qle~~--~~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr-- 78 (1005)
T KOG2274|consen 3 KQAIIELLSGSLSADQNVRSQAETQLKQLELT--EGFGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAFR-- 78 (1005)
T ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHhccccc--hHHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhcc--
Confidence 46899999999999999999999999999877 89999999999998789999999999999999999988654432
Q ss_pred ccC-CChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHh
Q 006253 82 WLS-LDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICE 160 (653)
Q Consensus 82 ~~~-l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~ 160 (653)
... .+++.|..||+.|++.+.+++..+|+.++.+++.||..+|| +.||++++.+..++++.+.+...+++.+|..+..
T Consensus 79 ~~~~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~P-d~WpElv~~i~~~l~~~n~n~i~~am~vL~el~~ 157 (1005)
T KOG2274|consen 79 YPLIVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYP-DEWPELVPFILKLLSSGNENSIHGAMRVLAELSD 157 (1005)
T ss_pred CCCcccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCc-hhhHHHHHHHHHHHhccchhhhhhHHHHHHHHHH
Confidence 233 66789999999999999988999999999999999999999 6999999999999999999999999999999988
Q ss_pred hhccccc---chhhHhHHHHHHHhcccCCCCCHHHHHHH--HHHHHHHHHhhhhhcCCh-h----HH----HHHHHHHHh
Q 006253 161 EVSSDAV---EQDHVNKILTAVVQGMNASESNNDVRLAA--TRALYNALGFAQANFSND-M----ER----DYIMRVVCE 226 (653)
Q Consensus 161 ~~~~~~~---~~~~~~~l~~~l~~~l~~~~~~~~vr~~a--~~~l~~~~~~~~~~~~~~-~----~~----~~il~~l~~ 226 (653)
....+.+ +......+. .++.... ..+...|..+ .+.+..+...+...-+.. . +. +.+++.+..
T Consensus 158 ev~~ee~~~~~~~~l~~m~-~~f~~~~--~~s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~~~l~h 234 (1005)
T KOG2274|consen 158 EVDVEEMFFVGPVSLAEMY-RIFALTI--VYSIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQILNQFMDILEH 234 (1005)
T ss_pred HHHHHHHhcccccchhhhh-hhhhhcc--ccchhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7621111 011112211 1222222 2334444333 466666555433211111 0 11 223334433
Q ss_pred hhc---CCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhc----------------------CCh------h
Q 006253 227 ATL---SPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVRE----------------------DEE------P 275 (653)
Q Consensus 227 ~~~---~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~----------------------~~~------~ 275 (653)
.++ ..++..+...++++..+++..+..+.+++..+++..++.+.. .++ .
T Consensus 235 ~l~~~~g~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~dsd~e~~~~~~ 314 (1005)
T KOG2274|consen 235 PLQRNDGSDFSLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYDSDPEEKSVET 314 (1005)
T ss_pred hhcccccchHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccccCCchhhhChHH
Confidence 332 256788999999999999999999999999888888776431 011 1
Q ss_pred HHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhh-------ccCCc----cCCCcccc
Q 006253 276 VALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLK-------QEEDQ----DQDEGAWN 344 (653)
Q Consensus 276 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~-------~~ed~----~~d~~~~~ 344 (653)
...+.++|+.+++.... ..+-+...++++++.+...+.- +..|. .++++.++
T Consensus 315 l~i~i~eF~s~i~t~~~-----------------~~~ti~~~l~~lI~~~v~y~Qlseeqie~w~sD~~~fV~dEd~~~~ 377 (1005)
T KOG2274|consen 315 LVIQIVEFLSTIVTNRF-----------------LSKTIKKNLPELIYQLVAYLQLSEEQIEVWTSDVNQFVADEDDGYT 377 (1005)
T ss_pred hhhhHHHHHHHHHHHHH-----------------HHHHhhhhhHHHHHHHHHHHHhhHHHHHHHhccHHHhhccCCCCch
Confidence 12344555555554310 0011222233334433332221 11111 11222368
Q ss_pred HhhhHHHHHHHHHhhcCCCchhchHHHHHh---------hhcCc-chhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHH
Q 006253 345 IAMAGGTCLGLVARTVGDDIVPLVMPFVEE---------NITKQ-EWRQREAATYAFGSILEGPSPEKLVPLVNIALNFM 414 (653)
Q Consensus 345 ~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~---------~l~~~-~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l 414 (653)
.|..+...+..+...+|...+..+.+.... ..+.+ .|+..++.+++.+....+ .....++..++..+
T Consensus 378 ~~~~~rd~~~~v~~~f~~~~i~~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~~~---~~~dd~l~~l~~~~ 454 (1005)
T KOG2274|consen 378 ARISVRDLLLEVITTFGNEGINPIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVRID---DANDDKLIELTIMI 454 (1005)
T ss_pred hhhhHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcccC---cchHHHHHHHHHHH
Confidence 888899999999998887766666655322 12233 478888888888877644 22334455555555
Q ss_pred HHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhcc-c-hhhHHHHHHHHHHHHHhcccCCC
Q 006253 415 LTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMK-D-VPNVAEKACGALYFLAQGFEDAI 492 (653)
Q Consensus 415 l~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~-d-~~~v~~~a~~al~~~~~~~~~~~ 492 (653)
...+..+..|..-.+++|+++.|++... ...+.+..++...+..+. + .+.++..|+.++..+|+
T Consensus 455 ~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~--------~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~------ 520 (1005)
T KOG2274|consen 455 DNGLVYQESPFLLLRAFLTISKFSSSTV--------INPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYCK------ 520 (1005)
T ss_pred HhhcccccCHHHHHHHHHHHHHHHhhhc--------cchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhccC------
Confidence 5555245677777799999999998865 356788888888888887 4 46788888888888873
Q ss_pred CCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhhcCChhHHH
Q 006253 493 SPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDERE 572 (653)
Q Consensus 493 ~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~ 572 (653)
...+.|++|.++..|..+..+.+ ..+...++++|..+++..++.....=..++|..+..+... .+|+.
T Consensus 521 --~~vl~~~~p~ild~L~qlas~~s---~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~-------s~DP~ 588 (1005)
T KOG2274|consen 521 --VKVLLSLQPMILDGLLQLASKSS---DEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKY-------SEDPQ 588 (1005)
T ss_pred --ceeccccchHHHHHHHHHccccc---HHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHh-------cCCch
Confidence 57799999999999999998776 4566789999999999888655555567778887776654 34542
Q ss_pred hHHHHHHHHHhHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccC----cchhhhHHHHHHHHHHHhccC
Q 006253 573 KQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRS----ATAHEEAMLAIGALAYATGLW 642 (653)
Q Consensus 573 ~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~----~~~~e~~~~~~~~l~~~~~~~ 642 (653)
+...+.+++..+...... ..|+...+++.++..+.... ..+-.-++..+..+.+.-++.
T Consensus 589 ----V~~~~qd~f~el~q~~~~-------~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~p 651 (1005)
T KOG2274|consen 589 ----VASLAQDLFEELLQIAAN-------YGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSP 651 (1005)
T ss_pred ----HHHHHHHHHHHHHHHHHh-------hcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCC
Confidence 233345555555553222 34778888998988888754 334445566666666666655
No 10
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3e-28 Score=237.79 Aligned_cols=583 Identities=18% Similarity=0.205 Sum_probs=411.4
Q ss_pred cCCChHHHHHHHHHHH-HHHhh------CcchHHHH-HHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhccC
Q 006253 13 QSVDGTVRKQAEESLK-QYQEQ------NLPGFLLS-LAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLS 84 (653)
Q Consensus 13 ~s~d~~~r~~A~~~L~-~~~~~------~~~~~~~~-l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~ 84 (653)
-+-|-..|+.|---|+ .+... +.-+|+.. ++.-+.+ .++-+|-..++++...+.+.. ...|.
T Consensus 58 ~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~yiKs~~l~~lgd--~~~lIr~tvGivITTI~s~~~-------~~~wp- 127 (885)
T KOG2023|consen 58 KSEDVPTRSLAGLLLKNNVRGHYNSIPSEVLDYIKSECLHGLGD--ASPLIRATVGIVITTIASTGG-------LQHWP- 127 (885)
T ss_pred cccchhHHHHhhhhHhccccccccCCChHHHHHHHHHHHhhccC--chHHHHhhhhheeeeeecccc-------cccch-
Confidence 3345556666655553 22221 11345543 4455554 366899888888888776432 24673
Q ss_pred CChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhh-------cCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHH
Q 006253 85 LDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIE-------LPHKQWPELIGALLSNIHQLPPHTKQATLETLGY 157 (653)
Q Consensus 85 l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~-------~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~ 157 (653)
.+.+.|.+.|.+++......+..++.+|++-. ++..-.+-++|.+++..++++|..|.-|+.|+..
T Consensus 128 -------elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq 200 (885)
T KOG2023|consen 128 -------ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQ 200 (885)
T ss_pred -------hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhh
Confidence 46778899999988777777778888877632 2212235688999999999999999999999988
Q ss_pred HHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHH
Q 006253 158 ICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQ 237 (653)
Q Consensus 158 l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~ 237 (653)
++-.- ++.+ -.+.+..+..++...+ |.+++||+..+.++.-+++.-.+.... +...+++..+..+++.++++.-
T Consensus 201 ~i~~~-~qal-~~~iD~Fle~lFalan--D~~~eVRk~vC~alv~Llevr~dkl~p--hl~~IveyML~~tqd~dE~VAL 274 (885)
T KOG2023|consen 201 FIIIQ-TQAL-YVHIDKFLEILFALAN--DEDPEVRKNVCRALVFLLEVRPDKLVP--HLDNIVEYMLQRTQDVDENVAL 274 (885)
T ss_pred eeecC-cHHH-HHHHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHHHhcHHhccc--chHHHHHHHHHHccCcchhHHH
Confidence 76544 4434 3567788888887776 899999999999999988876554432 3367888888899999999999
Q ss_pred HHHHHHHHHHHHh--HHhhHHhHHHHHHHHHHHhhcCChhHHHHH-HHhHHHhhHHHHhhh------------------h
Q 006253 238 AAFECLVAISSTY--YEKLAPYIQDIFNITAKAVREDEEPVALQA-IEFWSSVCDEEIDIL------------------E 296 (653)
Q Consensus 238 ~~~~~l~~l~~~~--~~~~~~~l~~l~~~~~~~~~~~~~~~~~~a-~~~~~~~~~~~~~~~------------------~ 296 (653)
++++.|..+++.. .+.+.||+++++|.+++.+...+.++.... -+==..+-+.+.++. +
T Consensus 275 EACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eD 354 (885)
T KOG2023|consen 275 EACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDED 354 (885)
T ss_pred HHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccc
Confidence 9999999999864 467889999999999998875443332111 000000000000000 0
Q ss_pred hcCC-----CCCCCCCCc-hh----h-----HHHhhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcC
Q 006253 297 EYGG-----DFSGDSDIP-CF----Y-----FIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVG 361 (653)
Q Consensus 297 ~~~~-----~~~~~~~~~-~~----~-----~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~ 361 (653)
+..+ +..++++++ |. . +-...++.++|.+.+.+.. +.|.+|.++.-+|+.+++.+-
T Consensus 355 dddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~---------~~W~vrEagvLAlGAIAEGcM 425 (885)
T KOG2023|consen 355 DDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSS---------EEWKVREAGVLALGAIAEGCM 425 (885)
T ss_pred ccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCc---------chhhhhhhhHHHHHHHHHHHh
Confidence 0000 000123332 21 1 2344555666666665553 349999999999999999885
Q ss_pred C---CchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 006253 362 D---DIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMF 438 (653)
Q Consensus 362 ~---~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~ 438 (653)
+ ..+|.++|++.+.+.|..+-+|..++|.|+..+.-...+.-..|+..++..+++.+ -|.+.+|++|||.++..+-
T Consensus 426 ~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~l-lD~NK~VQEAAcsAfAtle 504 (885)
T KOG2023|consen 426 QGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRL-LDSNKKVQEAACSAFATLE 504 (885)
T ss_pred hhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHH-hcccHHHHHHHHHHHHHHH
Confidence 5 44677899999999999999999999999987764433334467888888888888 8999999999999999998
Q ss_pred hhhccCCCCccccCccchHHHHHHHHHhccc-hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccc
Q 006253 439 EFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHRED 517 (653)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~ 517 (653)
+...+ ...+|+..++..|..+++- ..+--.--..|++++++.++.+ -.=..|++.+||.|+.-++.-+
T Consensus 505 E~A~~-------eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~----Ln~~~YiqiLmPPLi~KW~~ls 573 (885)
T KOG2023|consen 505 EEAGE-------ELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHA----LNKPAYIQILMPPLIEKWELLS 573 (885)
T ss_pred Hhccc-------hhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHh----cCcHHHHHHhccHHHHHHHhcC
Confidence 87654 2567999999999988874 2222233456677777776431 1122488999999987665443
Q ss_pred cchhchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhh---------------------------------
Q 006253 518 AGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQ--------------------------------- 564 (653)
Q Consensus 518 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~--------------------------------- 564 (653)
.+|+.+ .-.++|+++++..+|..|.||...++...+..++++.+..
T Consensus 574 d~DKdL-fPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~ 652 (885)
T KOG2023|consen 574 DSDKDL-FPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGS 652 (885)
T ss_pred cccchH-HHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhh
Confidence 324555 4899999999999999999999998888888877553310
Q ss_pred ----cCChhH---------HHhHHHHHHHHHhHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccCcchhhhHHHH
Q 006253 565 ----KLSSDE---------REKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLA 631 (653)
Q Consensus 565 ----~~~~~~---------~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~e~~~~~ 631 (653)
.+.... .+...++|..++..+|.+++++.+. ..|+...++..+...++..+-++-..|..+
T Consensus 653 ~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~------v~p~~~~fl~~lg~Nl~~~~isv~nNA~WA 726 (885)
T KOG2023|consen 653 HIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEH------VIPNLADFLPILGANLNPENISVCNNAIWA 726 (885)
T ss_pred chHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHh------ccchHHHHHHHHhhcCChhhchHHHHHHHH
Confidence 000000 0112368888888899999988766 889999999999988888888888999999
Q ss_pred HHHHHHHhccCCccc
Q 006253 632 IGALAYATGLWRIRY 646 (653)
Q Consensus 632 ~~~l~~~~~~~f~~y 646 (653)
+|.++-.+|....||
T Consensus 727 iGeia~k~g~~~~~~ 741 (885)
T KOG2023|consen 727 IGEIALKMGLKMKQY 741 (885)
T ss_pred HHHHHHHhchhhhhH
Confidence 999999999999999
No 11
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4e-26 Score=226.89 Aligned_cols=505 Identities=14% Similarity=0.197 Sum_probs=362.4
Q ss_pred HHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHHHhhhcCC---CCCchHHHHHHHhhcC--CChhHHHHHHHHHHHHHhhh
Q 006253 89 VKAQIKSFILKTLSSPAH-DARSTASQVVAKVAGIELPH---KQWPELIGALLSNIHQ--LPPHTKQATLETLGYICEEV 162 (653)
Q Consensus 89 ~~~~i~~~ll~~l~~~~~-~vr~~~~~~l~~ia~~~~~~---~~~~~l~~~l~~~l~~--~~~~~~~~~l~~l~~l~~~~ 162 (653)
.-..+...+..-..++.+ .++...++++|.++...-|+ ...++++-.+++.... ++..+|.+|+++|..-.+..
T Consensus 126 ~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~ 205 (859)
T KOG1241|consen 126 QWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFT 205 (859)
T ss_pred hCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHH
Confidence 334455666666666654 69999999999999876553 2456666667766654 36689999999998766654
Q ss_pred cccccch-hhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHH-HHHHHHHHhhhcCCcHHHHHHHH
Q 006253 163 SSDAVEQ-DHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMER-DYIMRVVCEATLSPEVKIRQAAF 240 (653)
Q Consensus 163 ~~~~~~~-~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~-~~il~~l~~~~~~~~~~~~~~~~ 240 (653)
...+.. ...+.+++.+...-+ .++.+++.+|+.||.+++...=+... .+. ..+++.-...+..+++++...++
T Consensus 206 -~~nF~~E~ern~iMqvvcEatq--~~d~~i~~aa~~ClvkIm~LyY~~m~--~yM~~alfaitl~amks~~deValQai 280 (859)
T KOG1241|consen 206 -KANFNNEMERNYIMQVVCEATQ--SPDEEIQVAAFQCLVKIMSLYYEFME--PYMEQALFAITLAAMKSDNDEVALQAI 280 (859)
T ss_pred -HHhhccHhhhceeeeeeeeccc--CCcHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 222312 223456777777766 68899999999999998763211111 111 23555556666788999999999
Q ss_pred HHHHHHHHHhHH-------hh------------HHhHHHHHHHHHHHhhc-------CChhHHHHHHHhHHHhhHHHHhh
Q 006253 241 ECLVAISSTYYE-------KL------------APYIQDIFNITAKAVRE-------DEEPVALQAIEFWSSVCDEEIDI 294 (653)
Q Consensus 241 ~~l~~l~~~~~~-------~~------------~~~l~~l~~~~~~~~~~-------~~~~~~~~a~~~~~~~~~~~~~~ 294 (653)
+.|+.+++..-+ .+ +..++.++|.+++.+.. +++.....|-..+.-++..-
T Consensus 281 EFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~--- 357 (859)
T KOG1241|consen 281 EFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCV--- 357 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHh---
Confidence 999987764321 11 12344788888887653 12233333333333333210
Q ss_pred hhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCC----CchhchHH
Q 006253 295 LEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGD----DIVPLVMP 370 (653)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~----~~~~~l~~ 370 (653)
-..+++.++|.+-+.++. ++|..|.+|.-+++.+...... .+.+..+|
T Consensus 358 -------------------~D~Iv~~Vl~Fiee~i~~---------pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp 409 (859)
T KOG1241|consen 358 -------------------GDDIVPHVLPFIEENIQN---------PDWRNREAAVMAFGSILEGPEPDKLTPIVIQALP 409 (859)
T ss_pred -------------------cccchhhhHHHHHHhcCC---------cchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhH
Confidence 011122344444444431 3499999999999998876642 44566777
Q ss_pred HHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcc--hHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCc
Q 006253 371 FVEENITKQEWRQREAATYAFGSILEGPSPEKL--VPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLET 448 (653)
Q Consensus 371 ~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~--~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~ 448 (653)
.+...+.|+.-.+|.++.|+||.+++++. +.. ..++...++.++..+ + .+|+|-.+++|++..+++.+.+.....
T Consensus 410 ~ii~lm~D~sl~VkdTaAwtlgrI~d~l~-e~~~n~~~l~~~l~~l~~gL-~-DePrva~N~CWAf~~Laea~~eA~~s~ 486 (859)
T KOG1241|consen 410 SIINLMSDPSLWVKDTAAWTLGRIADFLP-EAIINQELLQSKLSALLEGL-N-DEPRVASNVCWAFISLAEAAYEAAVSN 486 (859)
T ss_pred HHHHHhcCchhhhcchHHHHHHHHHhhch-hhcccHhhhhHHHHHHHHHh-h-hCchHHHHHHHHHHHHHHHHHHhccCC
Confidence 77788888888888999999999999863 322 346677888888888 6 479999999999999998776443210
Q ss_pred --cccCccchHHHHHHHHHhcc--c-h-hhHHHHHHHHHHHHHhcccCCC------------------------------
Q 006253 449 --PIINQGNCQQIISVLLQSMK--D-V-PNVAEKACGALYFLAQGFEDAI------------------------------ 492 (653)
Q Consensus 449 --~~~~~~~~~~il~~l~~~l~--d-~-~~v~~~a~~al~~~~~~~~~~~------------------------------ 492 (653)
.....+++..++..|+..-. | + ...|..|..||..+++...+.-
T Consensus 487 ~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~ 566 (859)
T KOG1241|consen 487 GQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRA 566 (859)
T ss_pred CCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHH
Confidence 01233678888888888765 3 3 6789999999999988764430
Q ss_pred ------------------CCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Q 006253 493 ------------------SPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIM 554 (653)
Q Consensus 493 ------------------~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~ 554 (653)
..+..+.++.+.+|..++++++... ...+.+.++-+++.++..+|..|..|+..+.|.+.
T Consensus 567 q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~--s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~ 644 (859)
T KOG1241|consen 567 QLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKR--SAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLL 644 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCc--cccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 2234788889999999999998744 25688899999999999999999999999999999
Q ss_pred HHHHHHHHhhcCChhHHHhHHHHHHHHHhHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhcc--CcchhhhHHHHH
Q 006253 555 MELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIR--SATAHEEAMLAI 632 (653)
Q Consensus 555 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~--~~~~~e~~~~~~ 632 (653)
..+++. .+. -++..+.+.+|.++++++.. |-||+..+++.|++.|++. ++.++-..+.+|
T Consensus 645 ~gL~n~--------~e~----qVc~~aVglVgdl~raL~~~------i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~F 706 (859)
T KOG1241|consen 645 MGLSNF--------QEY----QVCAAAVGLVGDLARALEDD------ILPYCDELMTVLVQCLSSPNLHRNVKPAILSVF 706 (859)
T ss_pred HHhhcc--------hHH----HHHHHHHHHHHHHHHHHHhh------hhhHHHHHHHHHHHHccCccccccccchHHHHH
Confidence 988764 233 36778999999999999999 9999999999999999985 567877889999
Q ss_pred HHHHHHhccCCccc-hhhhcC
Q 006253 633 GALAYATGLWRIRY-CLIVMG 652 (653)
Q Consensus 633 ~~l~~~~~~~f~~y-~~i~~~ 652 (653)
|.+|-++|.+|.|| ..++|-
T Consensus 707 gDIAlaIg~~F~~Yl~~vm~l 727 (859)
T KOG1241|consen 707 GDIALAIGADFEPYLEMVMPL 727 (859)
T ss_pred HHHHHHHHHhHHHHHHHHHHH
Confidence 99999999999999 777653
No 12
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.1e-24 Score=215.67 Aligned_cols=554 Identities=14% Similarity=0.161 Sum_probs=361.4
Q ss_pred ChhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhCcchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhh
Q 006253 1 MSAEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQ 80 (653)
Q Consensus 1 m~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~ 80 (653)
|.+++.|++..+++.|+..|+.||+.|.++.++ |||+..+.++..+.+.+.++|+.|+++|||.+.+.|+...+....
T Consensus 1 ~~~ellqcf~qTldada~~rt~AE~~Lk~leKq--PgFv~all~i~s~de~~lnvklsAaIYfKNkI~rsWss~~d~~i~ 78 (970)
T COG5656 1 MREELLQCFLQTLDADAGKRTIAEAMLKDLEKQ--PGFVMALLHICSKDEGDLNVKLSAAIYFKNKIIRSWSSKRDDGIK 78 (970)
T ss_pred ChHHHHHHHHHHhccCcchhhHHHHHHHHhhcC--CcHHHHHHHHHhhccCCchhhHHHHHHHhhhhhhhhhhcccCCCC
Confidence 789999999999999999999999999999999 999999999998877899999999999999999999874432110
Q ss_pred hccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHh
Q 006253 81 RWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICE 160 (653)
Q Consensus 81 ~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~ 160 (653)
....++.|+.++++++..+...+...|.+.-.++..|...++|.+.|+ +.|...+.+.+.+......++.|+..+++
T Consensus 79 --~Dek~e~K~~lienil~v~l~sp~~tr~~l~ail~~I~seD~ps~~wg-l~p~~~nll~s~ea~~vy~gLlcl~elfk 155 (970)
T COG5656 79 --ADEKSEAKKYLIENILDVFLYSPEVTRTALNAILVNIFSEDKPSDLWG-LFPKAANLLRSSEANHVYTGLLCLEELFK 155 (970)
T ss_pred --CcccHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccCchhhcc-cchHHHHhhcccchhHHHHHHHHHHHHHH
Confidence 123355666777777777777777889888888999999999978999 99999999999999999999999999998
Q ss_pred hhcccccc-h----hhHhHHHHHHHh---cccC--CCCCHHHHHHHHHHHHHHHHh-hhhhcCChhHHHHHHHHHHhhhc
Q 006253 161 EVSSDAVE-Q----DHVNKILTAVVQ---GMNA--SESNNDVRLAATRALYNALGF-AQANFSNDMERDYIMRVVCEATL 229 (653)
Q Consensus 161 ~~~~~~~~-~----~~~~~l~~~l~~---~l~~--~~~~~~vr~~a~~~l~~~~~~-~~~~~~~~~~~~~il~~l~~~~~ 229 (653)
..+=+.-+ + .....++|.+.+ .+.+ ++.+.++-...++.+...+-+ ++..+........+++....+++
T Consensus 156 ayRwk~ndeq~di~~li~alfpile~~g~nl~s~~ny~s~e~l~LILk~fKsvcy~~LP~~lsa~e~f~sw~ql~l~i~q 235 (970)
T COG5656 156 AYRWKYNDEQVDILMLITALFPILEKVGGNLESQGNYGSVETLMLILKSFKSVCYYSLPDFLSAIETFSSWFQLSLRILQ 235 (970)
T ss_pred HHhhhccchHhhHHHHHHHhhHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhhCCHHHccchhhHHHHHHHHHHHc
Confidence 75311110 1 223344554443 3322 123445555566655444322 12222211111223333333222
Q ss_pred -----------------CCcHHHHHHHHHHHHHHHHHhHHhh--HHh------HHHHHHHHHHHhhcC-----Chh--HH
Q 006253 230 -----------------SPEVKIRQAAFECLVAISSTYYEKL--APY------IQDIFNITAKAVRED-----EEP--VA 277 (653)
Q Consensus 230 -----------------~~~~~~~~~~~~~l~~l~~~~~~~~--~~~------l~~l~~~~~~~~~~~-----~~~--~~ 277 (653)
+...+.++.++-.|.++...+.+.. ..| .-.++|.+++..-+. ... ..
T Consensus 236 kplp~evlsldpevRs~~~wvKckKWa~ynLyR~fqRy~k~s~~~~y~~f~~~f~t~vp~il~tffkqie~wgqgqLWls 315 (970)
T COG5656 236 KPLPNEVLSLDPEVRSLSKWVKCKKWAAYNLYRSFQRYIKKSYKKSYLSFYITFMTRVPMILATFFKQIEEWGQGQLWLS 315 (970)
T ss_pred CCCCHHHhccChhhccccchhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeecc
Confidence 1233456677777877777654321 111 123555554432110 000 01
Q ss_pred HHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHH-HHHHHhhhccCCcc---CCC------------c
Q 006253 278 LQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVP-LLLETLLKQEEDQD---QDE------------G 341 (653)
Q Consensus 278 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~l~~~l~~~~ed~~---~d~------------~ 341 (653)
..++-++..+.+.-.+. .+.+.+++|++.-++. +++..++-.+++.| +|. +
T Consensus 316 d~~LYfi~~Fve~cv~~-------------d~tw~l~ePhlq~ii~~vIfPllc~see~eElfEnDp~eyirry~df~d~ 382 (970)
T COG5656 316 DIELYFIDFFVELCVDA-------------DQTWRLMEPHLQYIISGVIFPLLCLSEEEEELFENDPDEYIRRYYDFFDN 382 (970)
T ss_pred hHHHHHHHHHHHHHhhh-------------HhhHhhhccHHHHHHHhhhhhhcCCChhhHHHHhcCHHHHHHHhcchhcC
Confidence 12223333333221110 0234567777665554 23444443333221 111 1
Q ss_pred cccHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhc-----C---cchhhHHHHHHHHHHhhcCCCC-CcchHHHHH-HH
Q 006253 342 AWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENIT-----K---QEWRQREAATYAFGSILEGPSP-EKLVPLVNI-AL 411 (653)
Q Consensus 342 ~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~-----~---~~~~~r~aal~~l~~i~~~~~~-~~~~~~l~~-l~ 411 (653)
..++..+|..++-.....-++..+.-+++++...++ + .+.+..++|++.++++..-..+ ..+...+.. ++
T Consensus 383 g~spdlaal~fl~~~~sKrke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv 462 (970)
T COG5656 383 GLSPDLAALFFLIISKSKRKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIV 462 (970)
T ss_pred CCChhHHHHHHHHHHhcccchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHH
Confidence 234555677777777777777777777777776652 1 3477889999999988762211 222333332 46
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc-hhhHHHHHHHHHHHHHhcccC
Q 006253 412 NFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFED 490 (653)
Q Consensus 412 ~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~~~~~ 490 (653)
+.+...+ +++.-.+|.+||..++.+.+.++ .......++.....++++ +-.|+..|+.|+..++.+..
T Consensus 463 ~hv~P~f-~s~ygfL~Srace~is~~eeDfk---------d~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q- 531 (970)
T COG5656 463 NHVIPAF-RSNYGFLKSRACEFISTIEEDFK---------DNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQ- 531 (970)
T ss_pred HHhhHhh-cCcccchHHHHHHHHHHHHHhcc---------cchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchh-
Confidence 7778888 99999999999999999988776 345667777777788876 46899999999999987653
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH----HHHhh--
Q 006253 491 AISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQ----TLEAQ-- 564 (653)
Q Consensus 491 ~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~----~~~~~-- 564 (653)
....+..|++.+|+.|+.+.+..+. ...-+++..+++..+++..||..+++..+.+.+-+ .++++
T Consensus 532 ---~h~k~sahVp~tmekLLsLSn~fei------D~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d 602 (970)
T COG5656 532 ---SHEKFSAHVPETMEKLLSLSNTFEI------DPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSD 602 (970)
T ss_pred ---hhHHHHhhhhHHHHHHHHhcccccc------hHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 3567888999999999999887763 24567788889999999999999888888775433 33322
Q ss_pred -cCChhHHHhHHHHHHHHHhHHHHHHHHhCCC
Q 006253 565 -KLSSDEREKQNEIQGLLCGCLQVIIQKLGSS 595 (653)
Q Consensus 565 -~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~ 595 (653)
....||++ -....++.++.++.-++.+.
T Consensus 603 ~~s~vDDKq---maasGiL~T~~smiLSlen~ 631 (970)
T COG5656 603 TSSVVDDKQ---MAASGILRTIESMILSLENR 631 (970)
T ss_pred ccccccHHH---HHHHHHHHHHHHHHHhcccc
Confidence 11123442 12224677888888877755
No 13
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.95 E-value=1.5e-23 Score=212.70 Aligned_cols=566 Identities=13% Similarity=0.143 Sum_probs=401.2
Q ss_pred HHHHHhcCCChHHHHHHHHHHH-HHHhh-------CcchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHh
Q 006253 7 QILLNAQSVDGTVRKQAEESLK-QYQEQ-------NLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFEL 78 (653)
Q Consensus 7 ~ll~~~~s~d~~~r~~A~~~L~-~~~~~-------~~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~ 78 (653)
++++.+.|+|.+.|-.|...|. ++++. ..+..+..+++.+.+. +.++...|...++-..+
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~--ngEVQnlAVKClg~lvs---------- 76 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDK--NGEVQNLAVKCLGPLVS---------- 76 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhcc--CcHHHHHHHHHHHHHHh----------
Confidence 8999999999999999999986 66553 1356777788888864 67888888888887664
Q ss_pred hhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCC---CCCchHHHHHHHhhcC------CChhHHH
Q 006253 79 VQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPH---KQWPELIGALLSNIHQ------LPPHTKQ 149 (653)
Q Consensus 79 ~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~---~~~~~l~~~l~~~l~~------~~~~~~~ 149 (653)
.+.++..+.+.+.|...+.+..+..|-..+-.+..+.....|. ..-+++++.+...+.+ +...++-
T Consensus 77 -----Kvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~ 151 (1233)
T KOG1824|consen 77 -----KVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKC 151 (1233)
T ss_pred -----hchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHH
Confidence 2567778889999999988888888877777777665544441 1224444444444332 2334677
Q ss_pred HHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhc
Q 006253 150 ATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATL 229 (653)
Q Consensus 150 ~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~ 229 (653)
.++..++.+...+ ...+ .+.-..++..+...+. .+...+|+.|+.+++.+..+++.. ....+++.+..-+.
T Consensus 152 e~lDil~d~lsr~-g~ll-~~fh~~il~~l~~ql~--s~R~aVrKkai~~l~~la~~~~~~-----ly~~li~~Ll~~L~ 222 (1233)
T KOG1824|consen 152 EVLDILADVLSRF-GTLL-PNFHLSILKCLLPQLQ--SPRLAVRKKAITALGHLASSCNRD-----LYVELIEHLLKGLS 222 (1233)
T ss_pred HHHHHHHHHHHhh-cccC-cchHHHHHHHHhhccc--ChHHHHHHHHHHHHHHHHHhcCHH-----HHHHHHHHHHhccC
Confidence 7788887777777 5655 3333445555565666 577889999999999998876532 12456666665553
Q ss_pred -CCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHh---hcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCC
Q 006253 230 -SPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAV---REDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGD 305 (653)
Q Consensus 230 -~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (653)
......-...++||+.+++..++.+..|++.++|.+.+.. ..++++.|..+++.+..+..
T Consensus 223 ~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~---------------- 286 (1233)
T KOG1824|consen 223 NRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLR---------------- 286 (1233)
T ss_pred CCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHH----------------
Confidence 3455566678999999999999999999999999998877 56788999999888877775
Q ss_pred CCCchhhHHHhhhhhhHHHHHHHhhhcc-------CC-----------c-------cCCCccccHhhhHHHHHHHHHhhc
Q 006253 306 SDIPCFYFIKHALPVLVPLLLETLLKQE-------ED-----------Q-------DQDEGAWNIAMAGGTCLGLVARTV 360 (653)
Q Consensus 306 ~~~~~~~~~~~~l~~l~~~l~~~l~~~~-------ed-----------~-------~~d~~~~~~r~~a~~~L~~l~~~~ 360 (653)
.|+.-+.++.+.++..+++++++.. || + ||||.+|.+|++|++|+..+...-
T Consensus 287 ---rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR 363 (1233)
T KOG1824|consen 287 ---RCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSR 363 (1233)
T ss_pred ---hChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhcc
Confidence 2556677788888888888887531 11 1 123347999999999998886432
Q ss_pred CC-------CchhchHHHHH----------------------------------------------------------hh
Q 006253 361 GD-------DIVPLVMPFVE----------------------------------------------------------EN 375 (653)
Q Consensus 361 ~~-------~~~~~l~~~l~----------------------------------------------------------~~ 375 (653)
.+ ...|.++..+. ..
T Consensus 364 ~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~q 443 (1233)
T KOG1824|consen 364 LEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQ 443 (1233)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHH
Confidence 11 11222222111 11
Q ss_pred hcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCc--hHHHHHHHHHHHHHHhhhccCCCCccccCc
Q 006253 376 ITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPN--NHVKDTTAWTLGRMFEFLHGSTLETPIINQ 453 (653)
Q Consensus 376 l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~--~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~ 453 (653)
+.+.+.+.|..++..|..+.... +....++++.++|.+...| +|.+ ...+..++.++.......+ |....
T Consensus 444 lr~ks~kt~~~cf~lL~eli~~l-p~~l~~~~~slvpgI~~~l-~DkSsss~~ki~~L~fl~~~L~s~~------p~~fh 515 (1233)
T KOG1824|consen 444 LREKSVKTRQGCFLLLTELINVL-PGALAQHIPSLVPGIIYSL-NDKSSSSNLKIDALVFLYSALISHP------PEVFH 515 (1233)
T ss_pred HhhccccchhhHHHHHHHHHHhC-cchhhhcccccchhhhhhc-CCccchHHHHHHHHHHHHHHHhcCC------hhhcc
Confidence 11111223334444444444433 4556677888899999889 7754 4566666666655544443 34577
Q ss_pred cchHHHHHHHHHhccch-hhHHHHHHHHHHHHHhcccCCC-CCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHH
Q 006253 454 GNCQQIISVLLQSMKDV-PNVAEKACGALYFLAQGFEDAI-SPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETL 531 (653)
Q Consensus 454 ~~~~~il~~l~~~l~d~-~~v~~~a~~al~~~~~~~~~~~-~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l 531 (653)
++++.+.|.+....+++ +++...|......+++.+.+-. ...-...||+..++...++.+...+. |.++|+.++.|+
T Consensus 516 p~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~-DqeVkeraIscm 594 (1233)
T KOG1824|consen 516 PHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDS-DQEVKERAISCM 594 (1233)
T ss_pred cchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccc-cHHHHHHHHHHH
Confidence 89999999999998874 8898888888888888775520 01234678999999988888877766 589999999999
Q ss_pred HHHHHhcccccHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHhHHHHHHHHhCCCcchhhHhhHhHHHHHH
Q 006253 532 NEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMG 611 (653)
Q Consensus 532 ~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~i~~ 611 (653)
|.++...|+.....+..++|.+++++.+-+ + |-.+..++..|+.+.-.-+ .+|....+++
T Consensus 595 gq~i~~fgD~l~~eL~~~L~il~eRl~nEi--------T-------Rl~AvkAlt~Ia~S~l~i~-----l~~~l~~il~ 654 (1233)
T KOG1824|consen 595 GQIIANFGDFLGNELPRTLPILLERLGNEI--------T-------RLTAVKALTLIAMSPLDID-----LSPVLTEILP 654 (1233)
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHhchh--------H-------HHHHHHHHHHHHhccceee-----hhhhHHHHHH
Confidence 999999997667788888888888888622 2 2235556666766644433 6788888899
Q ss_pred HHHHHHhccCcchhhhHHHHHHHHHHHhccCCccc
Q 006253 612 LFLRVFAIRSATAHEEAMLAIGALAYATGLWRIRY 646 (653)
Q Consensus 612 ~l~~~l~~~~~~~~e~~~~~~~~l~~~~~~~f~~y 646 (653)
.+...+....+.+|...+.++..+..+++..+.+|
T Consensus 655 ~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~ 689 (1233)
T KOG1824|consen 655 ELASFLRKNQRALRLATLTALDKLVKNYSDSIPAE 689 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHH
Confidence 88888887777889999999999999999888877
No 14
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=8.8e-23 Score=202.47 Aligned_cols=614 Identities=13% Similarity=0.146 Sum_probs=377.8
Q ss_pred ChhHHHHHHHHhcCC--ChHHHHHHHHHHHHHHhhCcchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHh
Q 006253 1 MSAEVTQILLNAQSV--DGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFEL 78 (653)
Q Consensus 1 m~~~l~~ll~~~~s~--d~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~ 78 (653)
|.+++.|++.+...| |+..|+||.+.+++++.. |+.+.-+++++.+.+..+.+|..+...|...++.+
T Consensus 1 ~mddiEqav~a~ndp~vdsa~KqqA~~y~~qiKsS--p~aw~Icie~l~~~ts~d~vkf~clqtL~e~vrek-------- 70 (980)
T KOG2021|consen 1 MMDDIEQAVNAVNDPRVDSATKQQAIEYLNQIKSS--PNAWEICIELLINETSNDLVKFYCLQTLIELVREK-------- 70 (980)
T ss_pred CchHHHHHHHhhCCCcccHHHHHHHHHHHHhhcCC--ccHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHh--------
Confidence 556899999999887 899999999999999998 99999999999987789999999999999988643
Q ss_pred hhhccCCChHHHHHHHHHHHHhc-----CCC----ChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChh-HH
Q 006253 79 VQRWLSLDSSVKAQIKSFILKTL-----SSP----AHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPH-TK 148 (653)
Q Consensus 79 ~~~~~~l~~~~~~~i~~~ll~~l-----~~~----~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~-~~ 148 (653)
+...+...+..+|..+..-+ .++ .+-++++++++++.+...+|| ..|+.++..+...+.-+... -.
T Consensus 71 ---yne~nl~elqlvR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp-~~WnsfF~dlmsv~~~~s~~~~~ 146 (980)
T KOG2021|consen 71 ---YNEANLNELQLVRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYP-DCWNSFFDDLMSVFQVDSAISGL 146 (980)
T ss_pred ---hccCCHHHHHHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHhcccchhhH
Confidence 23377788888888876643 444 468999999999999999999 58999999999887644321 12
Q ss_pred HHHHHHHHHHHhhh-ccccc----------------chhhHhHHHHHHHhcccCC--CCCHHHHHHHHHHHHHHHHhhhh
Q 006253 149 QATLETLGYICEEV-SSDAV----------------EQDHVNKILTAVVQGMNAS--ESNNDVRLAATRALYNALGFAQA 209 (653)
Q Consensus 149 ~~~l~~l~~l~~~~-~~~~~----------------~~~~~~~l~~~l~~~l~~~--~~~~~vr~~a~~~l~~~~~~~~~ 209 (653)
..-++++-.|-.++ +.+.+ ....+.++.....+.+... ..++++-..++.|++++++|+.-
T Consensus 147 dfflkvllaIdsEiad~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWIdI 226 (980)
T KOG2021|consen 147 DFFLKVLLAIDSEIADQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWIDI 226 (980)
T ss_pred HHHHHHHHHhhhHhhhccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhhhh
Confidence 33344443333322 01111 0112344555555555421 23788889999999999999875
Q ss_pred hcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhH--HhHHHHHHHHHHHh------------------
Q 006253 210 NFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLA--PYIQDIFNITAKAV------------------ 269 (653)
Q Consensus 210 ~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~--~~l~~l~~~~~~~~------------------ 269 (653)
+.... +.+++.+.+.++ .+++|.+++.|+..++.+.=+-+. +.+ +++..+.+..
T Consensus 227 nLIaN---d~f~nLLy~fl~--ieelR~aac~cilaiVsKkMkP~dKL~ll-n~L~q~l~lfg~~s~dq~~d~df~e~vs 300 (980)
T KOG2021|consen 227 NLIAN---DYFLNLLYKFLN--IEELRIAACNCILAIVSKKMKPMDKLALL-NMLNQTLELFGYHSADQMDDLDFWESVS 300 (980)
T ss_pred hhhhc---hhHHHHHHHHHh--HHHHHHHHHHHHHHHHhcCCChhHHHHHH-HHHHHHHHHHhhhccccccCchHHHHHH
Confidence 54322 567777777774 677888888888887764311000 001 1110011100
Q ss_pred ------------------hcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCC-C-Cc-hhhH-------------HH
Q 006253 270 ------------------REDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDS-D-IP-CFYF-------------IK 315 (653)
Q Consensus 270 ------------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~-~~~~-------------~~ 315 (653)
++.+..++..+...+..+.. -+.....++.+..+ . ++ +..| ..
T Consensus 301 kLitg~gvel~~i~s~lnseld~~~kqn~l~~ll~~vp---yllq~l~~e~ddit~~ifpFlsdyl~~LKkl~~ls~~qk 377 (980)
T KOG2021|consen 301 KLITGFGVELTIIISQLNSELDTLYKQNVLSILLEIVP---YLLQFLNNEFDDITAKIFPFLSDYLAFLKKLKALSSPQK 377 (980)
T ss_pred HHHhhcceeeehhHhhhhhccCHHHHHHHHHHHHHHHH---HHHHHhcccchhhHHHHHHHHHHHHHHHhhcccccchhh
Confidence 11122222222222221111 11111111100000 0 00 0000 12
Q ss_pred hhhhhhHHHHHHHhhhccC-----C-ccCCCc--cccHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcC---cchhhH
Q 006253 316 HALPVLVPLLLETLLKQEE-----D-QDQDEG--AWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITK---QEWRQR 384 (653)
Q Consensus 316 ~~l~~l~~~l~~~l~~~~e-----d-~~~d~~--~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~---~~~~~r 384 (653)
..+.+++...++.|++.+. + +.+|++ --++|+.-...+++++...++-++..+-..+...+.+ .+|+.-
T Consensus 378 ~~l~~illai~kqicydemy~nddn~tg~EeEa~f~e~RkkLk~fqdti~~idpsl~l~~Ir~slS~al~ns~e~swqev 457 (980)
T KOG2021|consen 378 VPLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFFEEVRKKLKNFQDTIVVIDPSLFLNNIRQSLSAALMNSKEESWQEV 457 (980)
T ss_pred ccHHHHHHHHHHHHhccHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcchHHHH
Confidence 2344556666666765432 1 111111 2368887777888888777766666666666655443 469999
Q ss_pred HHHHHHHHHhhcCCCC-------Ccch--HHHHHHHHHHHHH-hcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCcc
Q 006253 385 EAATYAFGSILEGPSP-------EKLV--PLVNIALNFMLTA-LMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQG 454 (653)
Q Consensus 385 ~aal~~l~~i~~~~~~-------~~~~--~~l~~l~~~ll~~-l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~ 454 (653)
+.|+..+-.++++... ..+. ..+..+++.+... +..++|+.|.--.+..+.++.+.+.. ...
T Consensus 458 E~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~--------esq 529 (980)
T KOG2021|consen 458 ELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNKFFST--------ESQ 529 (980)
T ss_pred HHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHHHHhc--------chh
Confidence 9999988888775421 1111 2333445544432 22789999999999999999988864 456
Q ss_pred chHHHHHHHHHhc--cc-hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccc---------cchhc
Q 006253 455 NCQQIISVLLQSM--KD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHRED---------AGESR 522 (653)
Q Consensus 455 ~~~~il~~l~~~l--~d-~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~---------~~~~~ 522 (653)
+++.++.+++..- +. +.+||.+|.+.+.++++.++ +.+.||.+.++..+..++.... .....
T Consensus 530 ~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLk------kqlvpfie~iln~iqdlL~~~vtt~N~~s~~lt~fd 603 (980)
T KOG2021|consen 530 KIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLK------KQLVPFIEEILNKIQDLLHIKVTTINAQSDNLTIFD 603 (980)
T ss_pred hhHHHHHHHccchhccccccccchHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHcCcCCCcCcccccccccc
Confidence 8888888887653 34 68999999999999999874 6699999999999988872111 00112
Q ss_pred hHHHHHHHHHHHHHhcc---cccHHHHHHHHHHHHHHHHHHHH-hhcCChhHHHhHHHHHHHHHhHHHHHHHHhCCCcch
Q 006253 523 LRTAAYETLNEVVRCST---DETAPMVMQLVPLIMMELHQTLE-AQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQT 598 (653)
Q Consensus 523 ~~~~~~~~l~~l~~~~~---~~~~~~~~~l~~~l~~~l~~~~~-~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~ 598 (653)
-+...++++|.++.... +...-|+..++.+++....-... ....++++......=+..++-+|++++++....-++
T Consensus 604 dqlyIfEtiGviI~l~n~paE~qaay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c~~~lmaig~lakgf~~rlvt 683 (980)
T KOG2021|consen 604 DQLYIFETIGVIITLNNSPAELQAAYANTLITPLILDQIIGLLFAQLASDEASPVVIAECHHILMAIGTLAKGFHIRLVT 683 (980)
T ss_pred ccceeeecceEEEeCCCCCHHHHHHHHhcccChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhhcccccCcc
Confidence 23367888888875432 12334666666655443222111 111223332211111224667788888876543111
Q ss_pred hh--HhhHhHHHHHHHHHHHHhc--cCcchhhhHHHHHHHHHHHhccCCccc-hhhhc
Q 006253 599 KY--VFMQYADQMMGLFLRVFAI--RSATAHEEAMLAIGALAYATGLWRIRY-CLIVM 651 (653)
Q Consensus 599 ~~--~~~~~~~~i~~~l~~~l~~--~~~~~~e~~~~~~~~l~~~~~~~f~~y-~~i~~ 651 (653)
.+ -.......+.+.++..|.. ....+|..+-.++++++.++|++..|| |....
T Consensus 684 ~~qvg~~~vf~~~ldvil~~ls~f~k~E~iRsavrft~hRmI~~lg~~vlPfipklie 741 (980)
T KOG2021|consen 684 ENQVGNMVVFSNILDVILVTLSFFNKFENIRSAVRFTFHRMIPILGNKVLPFIPKLIE 741 (980)
T ss_pred hhcccHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhcchhhhcchHHHHH
Confidence 00 0222233444444444444 245689999999999999999999999 87653
No 15
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.94 E-value=2.7e-22 Score=193.20 Aligned_cols=523 Identities=13% Similarity=0.173 Sum_probs=350.3
Q ss_pred CCChhHHHHHHHHHhhhcchhhhhhHHHhhhhccCCChHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHhhhcCC--
Q 006253 50 EKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPA-HDARSTASQVVAKVAGIELPH-- 126 (653)
Q Consensus 50 ~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~-~~vr~~~~~~l~~ia~~~~~~-- 126 (653)
+.++....+|+.++..+...-. ....|. .+...+....+++. ..++.....+++.++....|+
T Consensus 105 s~epr~~~~Aaql~aaIA~~El------p~~~wp--------~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~l 170 (858)
T COG5215 105 SPEPRFCTMAAQLLAAIARMEL------PNSLWP--------GLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDL 170 (858)
T ss_pred CCccHHHHHHHHHHHHHHHhhC------ccccch--------HHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHH
Confidence 3466666777776665443210 112343 34445555566665 467777778888888776662
Q ss_pred -CCCchHHHHHHHhhcC--CChhHHHHHHHHHHHHHhhhcccccc-hhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHH
Q 006253 127 -KQWPELIGALLSNIHQ--LPPHTKQATLETLGYICEEVSSDAVE-QDHVNKILTAVVQGMNASESNNDVRLAATRALYN 202 (653)
Q Consensus 127 -~~~~~l~~~l~~~l~~--~~~~~~~~~l~~l~~l~~~~~~~~~~-~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~ 202 (653)
...+.++-.+...... ++..+|-+++.+|..-+... ...+. ....+.+++.+...-+ .++.+++.+|+-||..
T Consensus 171 i~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv-~~nf~~E~erNy~mqvvceatq--~~d~e~q~aafgCl~k 247 (858)
T COG5215 171 IQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFV-QGNFCYEEERNYFMQVVCEATQ--GNDEELQHAAFGCLNK 247 (858)
T ss_pred HHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHH-HHhhcchhhhchhheeeehhcc--CCcHHHHHHHHHHHHH
Confidence 1234444444443332 36678999999998744443 22221 2334567777777777 6789999999999999
Q ss_pred HHHhhhhhcCChhHH-HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHH--hhHH---------------hHHHHHHH
Q 006253 203 ALGFAQANFSNDMER-DYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYE--KLAP---------------YIQDIFNI 264 (653)
Q Consensus 203 ~~~~~~~~~~~~~~~-~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~---------------~l~~l~~~ 264 (653)
++...-+... .+. +.+.....+.+..++.++...+++.|..+++..-+ .-.. .+.+++|.
T Consensus 248 im~LyY~fm~--~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~ 325 (858)
T COG5215 248 IMMLYYKFMQ--SYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPE 325 (858)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHH
Confidence 8753211000 111 23444455667788999999999999887764321 1111 13356666
Q ss_pred HHHHhhc-------CChhHHHHH---HHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccC
Q 006253 265 TAKAVRE-------DEEPVALQA---IEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEE 334 (653)
Q Consensus 265 ~~~~~~~-------~~~~~~~~a---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~e 334 (653)
+++.+.. +++.+...| +++..+++.. ++.+| ++..+-+.++
T Consensus 326 lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd---------------------~i~~p----Vl~FvEqni~---- 376 (858)
T COG5215 326 LLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD---------------------KIMRP----VLGFVEQNIR---- 376 (858)
T ss_pred HHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh---------------------HhHHH----HHHHHHHhcc----
Confidence 6666542 122233222 2222222211 12222 2222222332
Q ss_pred CccCCCccccHhhhHHHHHHHHHhhcC----CCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchH--HHH
Q 006253 335 DQDQDEGAWNIAMAGGTCLGLVARTVG----DDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVP--LVN 408 (653)
Q Consensus 335 d~~~d~~~~~~r~~a~~~L~~l~~~~~----~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~--~l~ 408 (653)
.++|.-|.+|.-+++.+.+... .+++|..+|-+....+|+.-.++..+.||+|.|++.. ...+.+ ++.
T Consensus 377 -----~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v-a~~i~p~~Hl~ 450 (858)
T COG5215 377 -----SESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHV-AMIISPCGHLV 450 (858)
T ss_pred -----CchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHH-HHhcCcccccc
Confidence 2459999999999999887654 3567788888888888888788999999999999864 233333 344
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhcc--c-hhhHHHHHHHHHHHHH
Q 006253 409 IALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMK--D-VPNVAEKACGALYFLA 485 (653)
Q Consensus 409 ~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~--d-~~~v~~~a~~al~~~~ 485 (653)
..++..+-.+ . .+|++.-+.+|...++.+.+.....+.+....+++..++..|+..-. + +...|..+.++|++++
T Consensus 451 ~~vsa~liGl-~-D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli 528 (858)
T COG5215 451 LEVSASLIGL-M-DCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLI 528 (858)
T ss_pred HHHHHHHhhh-h-ccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Confidence 4445554455 4 47889999999999999999865544334455666666776666543 2 3567788888998888
Q ss_pred hcccCCC--------------------------------------------------CCCCCCchhHHHHHHHHHHhccc
Q 006253 486 QGFEDAI--------------------------------------------------SPSSPLTPFFQEIVQALLTVTHR 515 (653)
Q Consensus 486 ~~~~~~~--------------------------------------------------~~~~~l~~~l~~i~~~L~~~l~~ 515 (653)
..+.+.. -.+..+++.-+.+|..+++++++
T Consensus 529 ~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les 608 (858)
T COG5215 529 LICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILES 608 (858)
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhc
Confidence 7654430 34566778888888888888877
Q ss_pred cccchhchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHhHHHHHHHHhCCC
Q 006253 516 EDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSS 595 (653)
Q Consensus 516 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~ 595 (653)
.+ ...+...++.+++.+..++++.|..|+.++.|.+.+.++.. |+ -+...++..++.+++.+|..
T Consensus 609 ~~--~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~---------d~----~v~~~avglvgdlantl~~d 673 (858)
T COG5215 609 TK--PTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCT---------DR----FVLNSAVGLVGDLANTLGTD 673 (858)
T ss_pred cC--CchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcch---------hH----HHHHHHHHHHHHHHHHhhhh
Confidence 64 35667788999999999999999999999999999988642 33 25567899999999999999
Q ss_pred cchhhHhhHhHHHHHHHHHHHHhcc--CcchhhhHHHHHHHHHHHhccCCccc-hhh
Q 006253 596 EQTKYVFMQYADQMMGLFLRVFAIR--SATAHEEAMLAIGALAYATGLWRIRY-CLI 649 (653)
Q Consensus 596 ~~~~~~~~~~~~~i~~~l~~~l~~~--~~~~~e~~~~~~~~l~~~~~~~f~~y-~~i 649 (653)
|.+|+..++..+.+.+++. +++++-..+.+||.++.++|..|.|| .-|
T Consensus 674 ------f~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~i 724 (858)
T COG5215 674 ------FNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMI 724 (858)
T ss_pred ------HHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 9999999999999999985 56677788999999999999999999 443
No 16
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.91 E-value=1.4e-18 Score=177.04 Aligned_cols=584 Identities=17% Similarity=0.203 Sum_probs=398.7
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHhhCcchHHHHHHHHHhcC--CCChhHHHHHHHHHhhhcchhhh-------------
Q 006253 8 ILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVND--EKPVESRKLAGLILKNALDAKEQ------------- 72 (653)
Q Consensus 8 ll~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~--~~~~~~r~~a~~~l~~~i~~~~~------------- 72 (653)
+|+.+.+.+++++.-|-..|.-+-.+-++.-+..+.+-++++ +.-.+.|-.+++.|+..+.....
T Consensus 52 lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~ 131 (1233)
T KOG1824|consen 52 LLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKR 131 (1233)
T ss_pred HHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHH
Confidence 344444568899999999987443333334444444444432 22456666666666554432210
Q ss_pred -------h--hHH--------------HhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCC
Q 006253 73 -------H--RKF--------------ELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQW 129 (653)
Q Consensus 73 -------~--~~~--------------~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~ 129 (653)
. .++ ....++..+-++....+...++..+.++-..||+.++.+++.++... +...+
T Consensus 132 ~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~-~~~ly 210 (1233)
T KOG1824|consen 132 ITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSC-NRDLY 210 (1233)
T ss_pred HHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhc-CHHHH
Confidence 0 000 01112233333344455555555666677899999999999999886 44578
Q ss_pred chHHHHHHHhhcCC-ChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCC-CCCHHHHHHHHHHHHHHHHhh
Q 006253 130 PELIGALLSNIHQL-PPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNAS-ESNNDVRLAATRALYNALGFA 207 (653)
Q Consensus 130 ~~l~~~l~~~l~~~-~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~vr~~a~~~l~~~~~~~ 207 (653)
.++++.+...+... ++...+..++||+.++... ...+ -.|...++|.+.+..+.. ..+.++|...++++..++.+.
T Consensus 211 ~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~a-g~r~-~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rc 288 (1233)
T KOG1824|consen 211 VELIEHLLKGLSNRTQMSATRTYIQCLAAICRQA-GHRF-GSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRC 288 (1233)
T ss_pred HHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHh-cchh-hcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhC
Confidence 89999998888654 5666778899999999987 6667 578899999998877421 567899999999999999877
Q ss_pred hhhcCChhHHHHHHHHHHhhhc----------------------------------CCcHHHHHHHHHHHHHHHHHhHHh
Q 006253 208 QANFSNDMERDYIMRVVCEATL----------------------------------SPEVKIRQAAFECLVAISSTYYEK 253 (653)
Q Consensus 208 ~~~~~~~~~~~~il~~l~~~~~----------------------------------~~~~~~~~~~~~~l~~l~~~~~~~ 253 (653)
+.+.. .+++.+++.+..++. |-+|.+|+++.+|+..++....+.
T Consensus 289 p~ei~--p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~ 366 (1233)
T KOG1824|consen 289 PKEIL--PHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEM 366 (1233)
T ss_pred hhhhc--ccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHH
Confidence 65443 233445544443221 113789999999999999999998
Q ss_pred hHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCC-C--CCCCCCCchhhHHHhhhhhhHHHHHHHhh
Q 006253 254 LAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGG-D--FSGDSDIPCFYFIKHALPVLVPLLLETLL 330 (653)
Q Consensus 254 ~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~l~~l~~~l~~~l~ 330 (653)
+..+.+.+-|.++..+++.++.|+...++.+..+-.......+.+.+ + .++..+ ....+++...+.++..+-+.|+
T Consensus 367 L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~-s~~~~L~~~~~~iVkai~~qlr 445 (1233)
T KOG1824|consen 367 LPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTP-SDLSMLSDQVPLIVKAIQKQLR 445 (1233)
T ss_pred HHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCc-cchHHHHhhhHHHHHHHHHHHh
Confidence 88888999999999999999999998888777766543222222211 0 001100 0123444444445555544454
Q ss_pred hccCCccCCCccccHhhhHHHHHHHHHhhcCC---CchhchHHHHHhhhcCcc--hhhHHHHHHHHHHhhcCCCCCcchH
Q 006253 331 KQEEDQDQDEGAWNIAMAGGTCLGLVARTVGD---DIVPLVMPFVEENITKQE--WRQREAATYAFGSILEGPSPEKLVP 405 (653)
Q Consensus 331 ~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~---~~~~~l~~~l~~~l~~~~--~~~r~aal~~l~~i~~~~~~~~~~~ 405 (653)
+ .+-..|..+...|..+...+++ ...+.++|-+...++|.+ ...+..++..+..+..++.++.+.+
T Consensus 446 ---~------ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp 516 (1233)
T KOG1824|consen 446 ---E------KSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHP 516 (1233)
T ss_pred ---h------ccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhccc
Confidence 1 1123566777777888777754 556778888877777643 4556666666666555556889999
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhcc--c-hhhHHHHHHHHHH
Q 006253 406 LVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMK--D-VPNVAEKACGALY 482 (653)
Q Consensus 406 ~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~--d-~~~v~~~a~~al~ 482 (653)
+++.+.|.+..+. .|+.+.+-..|+.+.+++++....-.-.......+++++++...++.+. | +.+|+++|..+++
T Consensus 517 ~~~~Ls~~v~~aV-~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmg 595 (1233)
T KOG1824|consen 517 HLSALSPPVVAAV-GDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMG 595 (1233)
T ss_pred chhhhhhHHHHHh-cCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 9999999999999 9999999999999999999977532100013567899999999988887 4 5899999999999
Q ss_pred HHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHHHHHH
Q 006253 483 FLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTD-ETAPMVMQLVPLIMMELHQTL 561 (653)
Q Consensus 483 ~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~~ 561 (653)
.++-.+++ .+...++..++.++..+++. -.|..++.++..++.+.-. +..|.+..+++.+...++...
T Consensus 596 q~i~~fgD------~l~~eL~~~L~il~eRl~nE-----iTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~ 664 (1233)
T KOG1824|consen 596 QIIANFGD------FLGNELPRTLPILLERLGNE-----ITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQ 664 (1233)
T ss_pred HHHHHHhh------hhhhhhHHHHHHHHHHHhch-----hHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHH
Confidence 99998864 47778888888888888754 3567899999888765432 457899999999999888742
Q ss_pred HhhcCChhHHHhHHHHHHHHHhHHHHHHHHhCCCcchhhHhhHh-HHHHHHHHHHHHhccCcchhhhHHHHHHHHHH
Q 006253 562 EAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQY-ADQMMGLFLRVFAIRSATAHEEAMLAIGALAY 637 (653)
Q Consensus 562 ~~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~-~~~i~~~l~~~l~~~~~~~~e~~~~~~~~l~~ 637 (653)
..+|...+.++..+....+.. +..+ ++.++..+...++..+-.+-+.++.++..++.
T Consensus 665 -------------r~lr~~~l~a~~~L~~~~~~~------~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~ 722 (1233)
T KOG1824|consen 665 -------------RALRLATLTALDKLVKNYSDS------IPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAI 722 (1233)
T ss_pred -------------HHHHHHHHHHHHHHHHHHhcc------ccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 145666778888888888777 6654 44566666666665543444555555555443
No 17
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=99.90 E-value=1.4e-18 Score=169.65 Aligned_cols=525 Identities=18% Similarity=0.253 Sum_probs=352.2
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHhhCcchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhccCC
Q 006253 6 TQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSL 85 (653)
Q Consensus 6 ~~ll~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l 85 (653)
-+..++..-|++..++||++-|.+|+.. |+.|...-.|+.+ +..++.+..|+.+|.+.+.+ .|..+
T Consensus 17 DkVVttfyqg~g~~q~qAq~iLtkFq~~--PdaWtkad~IL~~-S~~pqskyiALs~LdklItt-----------kWkll 82 (1053)
T COG5101 17 DKVVTTFYQGDGRKQEQAQRILTKFQEL--PDAWTKADYILNN-SKLPQSKYIALSLLDKLITT-----------KWKLL 82 (1053)
T ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHhC--chHHHHHHHHHhc-ccCcchhhhHHHHHHHHHHh-----------hhhhC
Confidence 3566777889999999999999999998 9999999999998 56788999999999999986 46789
Q ss_pred ChHHHHHHHHHHHHhcCC--CCh-------HHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHH
Q 006253 86 DSSVKAQIKSFILKTLSS--PAH-------DARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLG 156 (653)
Q Consensus 86 ~~~~~~~i~~~ll~~l~~--~~~-------~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~ 156 (653)
+++.+..||.-+++.+-. .+. .+-+.+-..+..|++.++| .+||+++|.+++.-+ .+-.+.+..+.+|.
T Consensus 83 p~~~r~GiRnyvv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP-~nWP~FIpeli~~S~-~s~~vCeNnmivLk 160 (1053)
T COG5101 83 PEGMRQGIRNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWP-RNWPTFIPELINVSQ-ISMEVCENNMIVLK 160 (1053)
T ss_pred CcHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhcc-cccchhhHHHHhhcc-chHHHHhccHHHHH
Confidence 999999999998887643 233 3445667788889999999 599999999999765 56677888888888
Q ss_pred HHHhhh---cccccch-----------hhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHH
Q 006253 157 YICEEV---SSDAVEQ-----------DHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMR 222 (653)
Q Consensus 157 ~l~~~~---~~~~~~~-----------~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~ 222 (653)
.+.++. +.+.+++ ..+.+++..+.+.+.- ..++.+-++.+..+..++.|++-.+.. ...++.
T Consensus 161 lLsEEvFdfSaeqmTq~k~~~LkNqm~~EF~qIF~lc~qiLE~-~~~~SLi~ATLesllrfl~wiPl~yIf---eTnIie 236 (1053)
T COG5101 161 LLSEEVFDFSAEQMTQVKKRLLKNQMKIEFPQIFGLCKQILEY-SRDESLIEATLESLLRFLEWIPLDYIF---ETNIIE 236 (1053)
T ss_pred HhHHHHHhccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHhhCchhHHH---HHHHHH
Confidence 887764 2222211 2346677777777754 456778888899999888887643321 133444
Q ss_pred HHHhhhcCCcHHHHHHHHHHHHHHHHHhHH---------hhH---------------------------------HhHHH
Q 006253 223 VVCEATLSPEVKIRQAAFECLVAISSTYYE---------KLA---------------------------------PYIQD 260 (653)
Q Consensus 223 ~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~---------~~~---------------------------------~~l~~ 260 (653)
.+..... ..++.|...++||.+++..... .+. .++.+
T Consensus 237 Lv~~~f~-s~pd~r~~tl~CLtEi~~L~~~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~~~~~neq~Fvq~ 315 (1053)
T COG5101 237 LVLEHFN-SMPDTRVATLSCLTEIVDLGRHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYGGMDKNEQIFVQK 315 (1053)
T ss_pred HHHHHhc-cCCchhHHHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHcccChhHHHHHHH
Confidence 4433221 2344455555555555542200 000 00111
Q ss_pred HHHHH--------------------HHH-------hhcCChhHHHHHHHhHHHhhHHHHhhhhh-----cCC---CCCC-
Q 006253 261 IFNIT--------------------AKA-------VREDEEPVALQAIEFWSSVCDEEIDILEE-----YGG---DFSG- 304 (653)
Q Consensus 261 l~~~~--------------------~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~---~~~~- 304 (653)
+..++ +.. -.=.+.++-..|++.|..+...-..-... .++ -..|
T Consensus 316 LA~fL~s~~~~~~~lLE~~e~~e~llnah~YLiqiSrInereiFkt~leyW~klVadLy~E~q~lp~tem~Pli~ls~~s 395 (1053)
T COG5101 316 LAQFLSSLYEVYISLLEAREMAENLLNAHGYLIQISRINEREIFKTALEYWNKLVADLYSEFQRLPATEMSPLIQLSVGS 395 (1053)
T ss_pred HHHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcchhccccc
Confidence 11111 000 00112355567888888876543211110 000 0001
Q ss_pred ---------CCCCc-hhhHHHhhhhhhHHHHHHHhhhccCC-----cc--------CCCccccHhhhHHHHHHHHHhhcC
Q 006253 305 ---------DSDIP-CFYFIKHALPVLVPLLLETLLKQEED-----QD--------QDEGAWNIAMAGGTCLGLVARTVG 361 (653)
Q Consensus 305 ---------~~~~~-~~~~~~~~l~~l~~~l~~~l~~~~ed-----~~--------~d~~~~~~r~~a~~~L~~l~~~~~ 361 (653)
+++.+ .++....+++++.-+++..|..+||- ++ .|.|.....+.-..+|-.+.+...
T Consensus 396 ~~istnpn~~~~~pLrkhiY~~ilsqLrlvlienMvrPEEVliVendegEivRefvketDtI~lYksmRevLvyLthL~v 475 (1053)
T COG5101 396 QAISTNPNQDSTKPLRKHIYIGILSQLRLVLIENMVRPEEVLIVENDEGEIVREFVKETDTIELYKSMREVLVYLTHLIV 475 (1053)
T ss_pred hhccCCcchhcccchHHHHHHHHHHHHHHHHHHcCCCcceEEEEECCCcHHHHHHhccccHhHHHHHHhhHHHHHhhhhh
Confidence 11111 12344566777888888888876641 11 122344555667777877777666
Q ss_pred CCchhchHHHHHhhhcCcc--hhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhc----CCCchHHHHHHHHHHH
Q 006253 362 DDIVPLVMPFVEENITKQE--WRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALM----QDPNNHVKDTTAWTLG 435 (653)
Q Consensus 362 ~~~~~~l~~~l~~~l~~~~--~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~----~d~~~~vr~~a~~~l~ 435 (653)
++.-..++..+...+.+.+ |..-..-+||+|+|+...+...-..++-+++..++.... +|....|....++++|
T Consensus 476 ~Dte~~mi~Klarq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyvvG 555 (1053)
T COG5101 476 DDTEKYMIGKLARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVVG 555 (1053)
T ss_pred hhHHHHHHHHHHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeeeec
Confidence 6665666666666666665 566778899999999877544456677777777765431 6777788888999999
Q ss_pred HHHhhhccCCCCccccCccchHHHHHHHHHhccc-hhhHHHHHHHHHHHHHhcccCC--CCCCCCCchhHHHHHHHHHHh
Q 006253 436 RMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDA--ISPSSPLTPFFQEIVQALLTV 512 (653)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~~~~~~--~~~~~~l~~~l~~i~~~L~~~ 512 (653)
++-.++. .+..++..++..|.+.++. +..|+..||..+-.+++.|.-+ ......-+||+..|+..|-+.
T Consensus 556 QYpRFLk--------ahw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~kt 627 (1053)
T COG5101 556 QYPRFLK--------AHWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKT 627 (1053)
T ss_pred cchHHHH--------HHHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhh
Confidence 9998886 3789999999999999985 7899999999999999887543 122445578888888888777
Q ss_pred ccccccchhchHHHHHHHHHHHHHhcccc--cHHHHHHHHHHHHHHHHHHHH
Q 006253 513 THREDAGESRLRTAAYETLNEVVRCSTDE--TAPMVMQLVPLIMMELHQTLE 562 (653)
Q Consensus 513 l~~~~~~~~~~~~~~~~~l~~l~~~~~~~--~~~~~~~l~~~l~~~l~~~~~ 562 (653)
..+-+ ....+ ..+++++.+++..+.. ....+..++......|.+.+.
T Consensus 628 T~dL~--pqQ~h-tfYeAcg~vIse~p~~~~~~rlv~dlm~Lpn~aw~niv~ 676 (1053)
T COG5101 628 TGDLE--PQQKH-TFYEACGMVISEVPKTRDYKRLVLDLMDLPNSAWLNIVI 676 (1053)
T ss_pred cccCC--hHHHh-HHHHHHhHHHhccchhhHHHHHHHHHHHhhHHHHHHHHH
Confidence 66554 34444 7999999999998853 344556666666667776544
No 18
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.89 E-value=1.8e-18 Score=171.79 Aligned_cols=546 Identities=14% Similarity=0.174 Sum_probs=351.3
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHhh-CcchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhh--
Q 006253 4 EVTQILLNAQSVDGTVRKQAEESLKQYQEQ-NLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQ-- 80 (653)
Q Consensus 4 ~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~-~~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~-- 80 (653)
++..+|-..-++.+..|+.|..+|.+-..+ .+.-....++.++.+.+.+++.|+.-...+.+.+.+...-.+.=.-+
T Consensus 364 ~i~~llLkvKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs~tLeDqerhllVkvidriLyklDdlvrpYVhkIL 443 (1172)
T KOG0213|consen 364 KIMRLLLKVKNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKIL 443 (1172)
T ss_pred HHHHHHHhhcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcCccccchhhhhHHHHHHHHHHhhcccchhceeeeE
Confidence 567788888899999999999999854332 33446667888888888999999988877777665432211100000
Q ss_pred -hc--cCCChHHHH-----HHHHHHHHh---------c----CCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHh
Q 006253 81 -RW--LSLDSSVKA-----QIKSFILKT---------L----SSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSN 139 (653)
Q Consensus 81 -~~--~~l~~~~~~-----~i~~~ll~~---------l----~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~ 139 (653)
.. ..+.++... +|...|... + .+.++.||+..+.+++.+|.+. ..|.++|+|...
T Consensus 444 vViepllided~yar~egreIisnLakaaGla~mistmrpDidn~deYVRnttarafavvasal----gip~llpfLkav 519 (1172)
T KOG0213|consen 444 VVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNKDEYVRNTTARAFAVVASAL----GIPALLPFLKAV 519 (1172)
T ss_pred EEeecceecchHHHhhchHHHHHHHHHHhhhHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHh----CcHHHHHHHHHH
Confidence 00 123333332 233333331 1 1345899999999999999886 468999999999
Q ss_pred hcCC-ChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHH
Q 006253 140 IHQL-PPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERD 218 (653)
Q Consensus 140 l~~~-~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 218 (653)
++|. ++..|+.++.+...|+.......+ +|+..++..+..++. |....||.-+..++..+.+.... +.. ...+
T Consensus 520 c~SkkSwqaRhTgIkivqqIail~Gcsvl--phl~~lv~ii~~gl~--De~qkVR~itAlalsalaeaa~P-ygi-e~fD 593 (1172)
T KOG0213|consen 520 CGSKKSWQARHTGIKIVQQIAILSGCSVL--PHLKPLVKIIEHGLK--DEQQKVRTITALALSALAEAATP-YGI-EQFD 593 (1172)
T ss_pred hccccchhhhchhhHHHHHHHHHhcchhh--hhhHHHHHHHHHhhc--ccchhhhhHHHHHHHHHHHhcCC-cch-HHHH
Confidence 9987 899999999999999998865656 889999999999999 88889998888888887764321 110 1124
Q ss_pred HHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHH-hHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhh
Q 006253 219 YIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAP-YIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEE 297 (653)
Q Consensus 219 ~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 297 (653)
.++..|-+-++........+.+++++-++-........ |-.+++-.+.+-++.+|++++...+....++|...-- ...
T Consensus 594 sVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv-~~~ 672 (1172)
T KOG0213|consen 594 SVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGV-EPA 672 (1172)
T ss_pred HHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCC-CHH
Confidence 45555544443333333444555555444332222222 3457777888889999999999999998888864210 000
Q ss_pred cCCCCCCCC-CCchhh--H-------HHhhhhhhHHHHHHHhhhccCCc-------cCCCccccHhhhHHHHHHHHHhhc
Q 006253 298 YGGDFSGDS-DIPCFY--F-------IKHALPVLVPLLLETLLKQEEDQ-------DQDEGAWNIAMAGGTCLGLVARTV 360 (653)
Q Consensus 298 ~~~~~~~~~-~~~~~~--~-------~~~~l~~l~~~l~~~l~~~~ed~-------~~d~~~~~~r~~a~~~L~~l~~~~ 360 (653)
+. +. .++++. | -+....+++............++ |-.++.-..|+....+.+.+...+
T Consensus 673 y~-----r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~l 747 (1172)
T KOG0213|consen 673 YI-----RFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRL 747 (1172)
T ss_pred HH-----hhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhcc
Confidence 00 00 011110 0 01112233332222111110000 001122357888888888888877
Q ss_pred CCC-c----hhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 006253 361 GDD-I----VPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLG 435 (653)
Q Consensus 361 ~~~-~----~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~ 435 (653)
|.. + ...++.-+...++..+-.. ...+..+|.++...+ ....+|++.++..++..| +++.+.||..|+..++
T Consensus 748 g~~diderleE~lidgil~Afqeqtt~d-~vml~gfg~V~~~lg-~r~kpylpqi~stiL~rL-nnksa~vRqqaadlis 824 (1172)
T KOG0213|consen 748 GAADIDERLEERLIDGILYAFQEQTTED-SVMLLGFGTVVNALG-GRVKPYLPQICSTILWRL-NNKSAKVRQQAADLIS 824 (1172)
T ss_pred ccccccHHHHHHHHHHHHHHHHhcccch-hhhhhhHHHHHHHHh-hccccchHHHHHHHHHHh-cCCChhHHHHHHHHHH
Confidence 632 2 2223333333333222111 135667787777663 557899999999999999 9999999999999999
Q ss_pred HHHhhhccCCCCccccCccchHHHHHHHHHhccc-hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhcc
Q 006253 436 RMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTH 514 (653)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~ 514 (653)
.++..+.. ......+..+=..|.+.++. .+.|--....|++.++...+ -..+.|-+..++|.|..++.
T Consensus 825 ~la~Vlkt------c~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvig-----m~km~pPi~dllPrltPILk 893 (1172)
T KOG0213|consen 825 SLAKVLKT------CGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIG-----MTKMTPPIKDLLPRLTPILK 893 (1172)
T ss_pred HHHHHHHh------ccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhcc-----ccccCCChhhhcccchHhhh
Confidence 99987752 11234455555667788875 57776666666776666543 35678889999999999998
Q ss_pred ccccchhchHHHHHHHHHHHHHhcccccH--HHHHHHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHhHHHHHHHHh
Q 006253 515 REDAGESRLRTAAYETLNEVVRCSTDETA--PMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKL 592 (653)
Q Consensus 515 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~--~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~ 592 (653)
+.. .++++..+..++.++...++.+. .++.. +=.+++.|... .+ ++|..+..++|.|++++
T Consensus 894 nrh---eKVqen~IdLvg~IadrgpE~v~aREWMRI-cfeLlelLkah---------kK----~iRRaa~nTfG~IakaI 956 (1172)
T KOG0213|consen 894 NRH---EKVQENCIDLVGTIADRGPEYVSAREWMRI-CFELLELLKAH---------KK----EIRRAAVNTFGYIAKAI 956 (1172)
T ss_pred hhH---HHHHHHHHHHHHHHHhcCcccCCHHHHHHH-HHHHHHHHHHH---------HH----HHHHHHHhhhhHHHHhc
Confidence 764 68899999999999999887432 24443 22334544432 12 57888999999999999
Q ss_pred CCCc
Q 006253 593 GSSE 596 (653)
Q Consensus 593 ~~~~ 596 (653)
|.++
T Consensus 957 GPqd 960 (1172)
T KOG0213|consen 957 GPQD 960 (1172)
T ss_pred CHHH
Confidence 9774
No 19
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=99.88 E-value=2.5e-18 Score=175.66 Aligned_cols=576 Identities=15% Similarity=0.130 Sum_probs=330.0
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHhhCcchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhccCC
Q 006253 6 TQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSL 85 (653)
Q Consensus 6 ~~ll~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l 85 (653)
+..+..+.|+|+..++.||+.|++..++ +||...|..+..+...+.++|..|++.|||+++++|++.. -..+
T Consensus 7 v~~~~~aqs~~p~s~k~AE~~Lrqwe~q--~gF~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~W~~~~------~~~i 78 (947)
T COG5657 7 VKQLDLAQSPDPPSVKCAEERLRQWEKQ--HGFALKLLSINLSAFNSMSLRWAALIQFKNYIDKHWREEN------GNSI 78 (947)
T ss_pred HHHHHhhcCCCCchHhhHHHHHHhhhcc--ccHHHHHHHHHhccccchhHHHHHHHHHHhhHHHHhhhhc------ccCC
Confidence 4567889999999999999999999999 9999999999998778999999999999999999998532 2346
Q ss_pred ChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhccc
Q 006253 86 DSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSD 165 (653)
Q Consensus 86 ~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~ 165 (653)
.++....||..++.++-+.+..+..+.|.+++.||+.++| +.||+++|.|...+++.|-.+-.+.+.++..+.+.+.+-
T Consensus 79 ~p~e~v~IR~~l~~lii~s~n~l~iq~a~avs~IA~~DfP-deWpTL~~DL~~~Ls~~D~~tn~~~L~~~h~Ifk~~r~l 157 (947)
T COG5657 79 LPDENVLIRDELFSLIISSSNQLQIQNALAVSRIARLDFP-DEWPTLVPDLLSLLSEKDMVTNENSLRVLHHIFKRLRRL 157 (947)
T ss_pred CCccchHHHHHHHHHHHcccchHHHHHHHHHHHHHhccCc-ccchhHHHHHHhhhcccchHHHHHHHHHHHHHHHHHhhh
Confidence 6666669999999999988888888999999999999999 699999999999999988888888999999998887422
Q ss_pred ccchhhH----hHHHHHHHhcccCCCCCHHHHH-----------HHHHHHHHHHHhhhhhcCCh-h----HHHHHHHHHH
Q 006253 166 AVEQDHV----NKILTAVVQGMNASESNNDVRL-----------AATRALYNALGFAQANFSND-M----ERDYIMRVVC 225 (653)
Q Consensus 166 ~~~~~~~----~~l~~~l~~~l~~~~~~~~vr~-----------~a~~~l~~~~~~~~~~~~~~-~----~~~~il~~l~ 225 (653)
.-..+.+ ..+.+.+.+.+...-+....+. .+++.+..+..+ ++.+. . ..+.++.++.
T Consensus 158 ~Rsd~lf~ei~p~L~~~l~pfl~~~~~~~s~~~~~~~~llslfqv~L~~~r~~~~~---~~qdi~eFfEd~l~~~m~~F~ 234 (947)
T COG5657 158 FRSDALFLEIAPVLLSILCPFLFSSAYFWSMSENLDESLLSLFQVCLKLIRRYYDL---GFQDIPEFFEDNLDKFMEHFC 234 (947)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhccchhHHhhcchhhHHHHHHHHHHHHHHHHHh---cCCChhHHHHHHHHHHHHHHH
Confidence 1112222 2333333333221111222211 133333332222 22211 1 1234455555
Q ss_pred hhhcCCcH-------------HHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhcC-Ch----hHHHHHHHhHHHh
Q 006253 226 EATLSPEV-------------KIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVRED-EE----PVALQAIEFWSSV 287 (653)
Q Consensus 226 ~~~~~~~~-------------~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~-~~----~~~~~a~~~~~~~ 287 (653)
.++....+ .++...++.+..+...+++.+.+++-+.++.+++.+++- ++ -....++.++..+
T Consensus 235 klls~~~~~lq~~~le~~~~~~l~~~i~e~f~ly~t~yp~~it~li~dfv~~vw~~lttit~~~~~d~Lv~k~l~~l~~v 314 (947)
T COG5657 235 KLLSYSNPVLQKDCLEDCVYFKLKGSICEIFNLYTTKYPEVITYLIYDFVEIVWNLLTTITRPYIRDYLVSKSLTVLINV 314 (947)
T ss_pred HHHhhcchhhhhhhcccceeeeecccHHHHHHHHhhccHHHhhHHHHHHHHHHHHHHHhhcCccccchhhhhHHHHHHHh
Confidence 44432111 234456677777777788888888888888888877652 22 2223344443333
Q ss_pred hHHHHhhhhhcCCCCCCCCCCc-hhhHHHhhhhhhHHHHHHH-hhhccCCcc---CCC-----------ccccHhhhHHH
Q 006253 288 CDEEIDILEEYGGDFSGDSDIP-CFYFIKHALPVLVPLLLET-LLKQEEDQD---QDE-----------GAWNIAMAGGT 351 (653)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~l~~~l~~~-l~~~~ed~~---~d~-----------~~~~~r~~a~~ 351 (653)
.... ..++ .. ..+.......++++.++.. +.-.++|-| +|. -..++|.++.+
T Consensus 315 ~k~~---irk~---------~e~l~n~~~~~~~~lvd~l~l~n~~lreed~E~~~ddp~eyire~s~~dye~~vr~~~~~ 382 (947)
T COG5657 315 IKYP---IRKT---------AEVLSNVSENLINNLVDLLILPNLILREEDLEEWEDDPLEYIREQSKTDYEVNVRPCIEN 382 (947)
T ss_pred hccc---cHHH---------HHHHHHHHHHHHHHHHHHHhhhccccCcccccccccCHHHHHHhhccccchhhhhHHHHH
Confidence 3210 0000 00 0111233444555544432 222222211 111 12357788888
Q ss_pred HHHHHHhhcCCCchhchHHHHHhhhcCcc---hhhHHHHHHHHHHhhcCCCCCcchHHH----HHHHHHHHHHhcCCCch
Q 006253 352 CLGLVARTVGDDIVPLVMPFVEENITKQE---WRQREAATYAFGSILEGPSPEKLVPLV----NIALNFMLTALMQDPNN 424 (653)
Q Consensus 352 ~L~~l~~~~~~~~~~~l~~~l~~~l~~~~---~~~r~aal~~l~~i~~~~~~~~~~~~l----~~l~~~ll~~l~~d~~~ 424 (653)
-++..-...++-+.+.+...+.+..+.++ ...+..+++++-.+.... -..+-++. +.+.|.++.-- .-.+.
T Consensus 383 ~l~~~f~~~~~i~~~~~~~~ie~~~t~P~~~d~~~~~~a~~a~~g~g~~a-v~~~~~~v~~~~~~~~pd~~s~~-~~~~~ 460 (947)
T COG5657 383 ELKDLFDVFGRIAVGHELTVIESEATTPNILDEARQLFAAYASFGLGVEA-VNRMVDFVKFLGSIIYPDLLSPN-EIIHL 460 (947)
T ss_pred HHHHHHHHHhhHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHhcCccccCcc-cCcee
Confidence 88888777786677888888887777663 122222333322222110 01111111 11222221111 11334
Q ss_pred HHHH-HHHHHHHHHHhhhccCCCCccccCccc-hHHHHHHHHHhccchhhHHHHHHHHHHHHHhcccCCCCCCCCCchhH
Q 006253 425 HVKD-TTAWTLGRMFEFLHGSTLETPIINQGN-CQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPFF 502 (653)
Q Consensus 425 ~vr~-~a~~~l~~~~~~~~~~~~~~~~~~~~~-~~~il~~l~~~l~d~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l 502 (653)
+++. ++..++.......... .....+ -.+.+........ +..+......+...+.+.+- +++....+-+
T Consensus 461 ri~~~~i~~i~~~r~~l~~~~-----~~~~~fl~~~~F~~yt~~~i-d~~~lLT~~~a~~t~~~~~n---~~~~~~~~~l 531 (947)
T COG5657 461 RILRSRIAYILTFRNQLDSSE-----LSESKFLASQFFVNYTTACI-DAVVLLTTREAYSTIFDDWN---FSVCSKIGLL 531 (947)
T ss_pred EEehhccchheechhhhhhhh-----hhhHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHhcc---cccccccccH
Confidence 4433 3333332222111100 000011 1111111111111 11222222223333333321 2233455667
Q ss_pred HHHHHHHHHhccccccchhchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHH
Q 006253 503 QEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLC 582 (653)
Q Consensus 503 ~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 582 (653)
++++-.+.+.....+. ...++..++++++++...++...|....+++.+.+.|.....++ ..+ .+-....
T Consensus 532 enl~~lvl~~~as~~~--~~e~~~ll~~i~rii~~~~~~i~pl~~~il~~L~~lv~~~~knp----s~p----~~~h~~f 601 (947)
T COG5657 532 ENLILLVLSLMASPSS--LEEREFLLQLISRIIIIDPELIAPLGSEILQLLDNLVEINAKNP----SNP----QFAHYTF 601 (947)
T ss_pred HHHHHHHHHhcCCcch--hHHHHHHHHHHHHHHHhCHHhhhhhHHHHHHHHHHHHHHHccCC----ccH----HHHHHHH
Confidence 7888778887776663 45677899999999999999889988888888888877653322 122 1233456
Q ss_pred hHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccCcchh-hhHHHHHHHHH
Q 006253 583 GCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAH-EEAMLAIGALA 636 (653)
Q Consensus 583 ~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~-e~~~~~~~~l~ 636 (653)
+-|++++..... ..+..++.+...+...+..+- |++++.|+-+.
T Consensus 602 e~I~al~~~~~~----------~~~~~ip~l~~~l~p~~~~l~~ed~~El~~~~l 646 (947)
T COG5657 602 EDIGALVFLKSG----------MCEITIPTLVLALVPEFPVLLSEDATELWSYVL 646 (947)
T ss_pred HHHHHHHHhhhc----------ccccchHHHHHhhCccchhhhhhhHHHHHHHHH
Confidence 666666665443 355566667777766544444 77877777653
No 20
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=2.5e-16 Score=160.36 Aligned_cols=600 Identities=15% Similarity=0.189 Sum_probs=374.4
Q ss_pred HHHHHHHHhcCC-ChHHHHHHHHHHHHHHhhCcchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhc
Q 006253 4 EVTQILLNAQSV-DGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRW 82 (653)
Q Consensus 4 ~l~~ll~~~~s~-d~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~ 82 (653)
++..++..+.++ +++....++++|++.+.. +.-+..-.+++.. +..+++|.++++.|...+++ +|
T Consensus 8 ~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S--~Q~w~~s~~llQ~-~k~~evqyFGAltL~~ki~~-----------~~ 73 (982)
T KOG2022|consen 8 TVEELVTTLYSHRNHENDAITQKWLQDAQCS--QQGWHFSWQLLQP-DKSSEVQYFGALTLHDKINT-----------RW 73 (982)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHhh--HHHHHHHHHHcCC-CchhHHHHHhHHHHHHHHHh-----------hh
Confidence 677888888886 778888899999999887 7777777788776 56778899999999998885 56
Q ss_pred cCCChHHHHHHHHHHHHhcCC--C-ChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCC-Ch----hHH-HHHHH
Q 006253 83 LSLDSSVKAQIKSFILKTLSS--P-AHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQL-PP----HTK-QATLE 153 (653)
Q Consensus 83 ~~l~~~~~~~i~~~ll~~l~~--~-~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~-~~----~~~-~~~l~ 153 (653)
...+++..+.++..++..+.- + ..-|-+..+..++.++-+..| +.||+-+..++..++.. +| +.+ ...++
T Consensus 74 e~~~~~~~~qL~~klf~~l~~~~g~~~lVl~kl~~sLasl~l~~~~-d~Wp~ai~~vi~~l~~q~~p~v~ad~n~~~~Le 152 (982)
T KOG2022|consen 74 EECPANEAVQLKLKLFLILSRFAGGPKLVLNKLCASLASLILYMVP-DLWPTAIQDVIPTLQGQASPLVLADINCEILLE 152 (982)
T ss_pred ccCChhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHcc-ccCCchHHHHHHHHhcccCccccchhhHHHHHH
Confidence 788999999999888887643 2 357778888888888888778 69999999999998653 22 111 22233
Q ss_pred HHHHHHhhhcccccc-------h----hhHhH---HHHHHHhcccCCCCCH----HHHHHHHHHHHHHHHhhhhhcCChh
Q 006253 154 TLGYICEEVSSDAVE-------Q----DHVNK---ILTAVVQGMNASESNN----DVRLAATRALYNALGFAQANFSNDM 215 (653)
Q Consensus 154 ~l~~l~~~~~~~~~~-------~----~~~~~---l~~~l~~~l~~~~~~~----~vr~~a~~~l~~~~~~~~~~~~~~~ 215 (653)
.|..+..++.-..+. + ..... ++..+++...+ .... -.+.++++|+..++.++.-...+-.
T Consensus 153 ~Ls~~p~e~q~~~l~~t~~~~l~~eLak~~~~v~~l~e~vlr~~~n-~t~s~~~~i~~~~a~dCv~~Wi~~i~~~~~~c~ 231 (982)
T KOG2022|consen 153 VLSFMPAEFQHVTLPLTRRSVLRGELAKFSENVISLLEVVLRGGSN-STSSLINLIFKQAAVDCVEQWIRYISLTGMDCD 231 (982)
T ss_pred HhccCcHhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHhcccc-ccHHHHHHHhhhHHHHHHHHHHHHhccccccHH
Confidence 333222222100110 0 01122 33333333332 1112 3577889998888774321100000
Q ss_pred ---------------------------------------------------HHH---HHHHHHHh----------hhcCC
Q 006253 216 ---------------------------------------------------ERD---YIMRVVCE----------ATLSP 231 (653)
Q Consensus 216 ---------------------------------------------------~~~---~il~~l~~----------~~~~~ 231 (653)
+++ .+++.+.. ...++
T Consensus 232 ~i~~~ll~~l~~s~~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~~~y~nti~~li~i~~~~l~e~~~~~~~~e~~ 311 (982)
T KOG2022|consen 232 QITQVLLDVLGQSTEGSYEAAEKCMTIFGNVLADDTLLASVNDIIQPDCEFYRNTITLLISICLGILQEVSGKIQEEENA 311 (982)
T ss_pred HHHHHHHHHHhhhccccccchhhhcccchhhhccchHHHHHHHhcChHHHhccchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 000 01111100 00111
Q ss_pred c--HHHHHHHHHHHHHHHHHhHHhhHH---------hHHHHHHHHHHHhhc-----CChhHHHHHHHhHHHhhHHHHhhh
Q 006253 232 E--VKIRQAAFECLVAISSTYYEKLAP---------YIQDIFNITAKAVRE-----DEEPVALQAIEFWSSVCDEEIDIL 295 (653)
Q Consensus 232 ~--~~~~~~~~~~l~~l~~~~~~~~~~---------~l~~l~~~~~~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~ 295 (653)
| .+.....+......++++...+.. ++..++..+.....- .++.+...++.||.++.++.....
T Consensus 312 d~~~e~i~~~~~i~v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~ypveE~~S~~~l~FW~tL~dei~~~~ 391 (982)
T KOG2022|consen 312 DASEEEIVTFLAITVSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQYPVEEIVSDRTLIFWYTLQDEIMQTI 391 (982)
T ss_pred CchhHHHHHHHHHHHHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCCccHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 1 222222222222333222111111 111222222222221 134566788999999987643221
Q ss_pred hhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCC-----ccCCCccc-cHhhhHHHHHHHHHhhcCCCchhchH
Q 006253 296 EEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEED-----QDQDEGAW-NIAMAGGTCLGLVARTVGDDIVPLVM 369 (653)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed-----~~~d~~~~-~~r~~a~~~L~~l~~~~~~~~~~~l~ 369 (653)
.+ + -+..+..+.++++.+++..++.++....+. +.++-+++ ..|+.-.+++...-+.+|+..+..+.
T Consensus 392 ~e------~-~~~~~~i~~~qIy~qlvei~l~K~~~Ps~e~~~~W~S~s~e~F~~YR~diSD~~~~~Y~ilgd~ll~~L~ 464 (982)
T KOG2022|consen 392 NE------T-QQIKKQILSQQIYAQLVEILLKKLALPSKEIWLSWSSDSREQFESYRKDISDLLMSSYSILGDGLLDFLI 464 (982)
T ss_pred hc------c-CCcchhHHHHHHHHHHHHHHHHHhcCCCHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 11 0 001233456688888899888887643221 01111222 47777888888888888999999999
Q ss_pred HHHHhhhcCcc-----hhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHH-hcCCCchHHHHHHHHHHHHHHhhhcc
Q 006253 370 PFVEENITKQE-----WRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTA-LMQDPNNHVKDTTAWTLGRMFEFLHG 443 (653)
Q Consensus 370 ~~l~~~l~~~~-----~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~-l~~d~~~~vr~~a~~~l~~~~~~~~~ 443 (653)
..+.+.+.+++ |..-++.++.+-++++..+ ....+.++.++...... + ...++....++...+|.++.++.+
T Consensus 465 ~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~-~t~~~~i~rl~~~~asik~-S~~n~ql~~Tss~~igs~s~~l~e 542 (982)
T KOG2022|consen 465 DTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLG-ETESTWIPRLFETSASIKL-SAPNPQLLSTSSDLIGSLSNWLGE 542 (982)
T ss_pred HHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcC-cchhHHHHHHHHhcccccc-ccCChhHHHHHHHHHHHHHHHHhc
Confidence 99999988766 9999999999999999874 55566666665544322 2 235889999999999999999985
Q ss_pred CCCCccccCccchHHHHHHHHHhccchhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccchhch
Q 006253 444 STLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRL 523 (653)
Q Consensus 444 ~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~ 523 (653)
...|+++.+|.|+++++ +++....+...+..+|+.+. ..+.||.+.++..+-..++.... ....
T Consensus 543 --------~P~~ln~sl~~L~~~Lh-~sk~s~q~i~tl~tlC~~C~------~~L~py~d~~~a~~~e~l~~~~~-~~S~ 606 (982)
T KOG2022|consen 543 --------HPMYLNPSLPLLFQGLH-NSKESEQAISTLKTLCETCP------ESLDPYADQFSAVCYEVLNKSNA-KDSD 606 (982)
T ss_pred --------CCcccCchHHHHHHHhc-CchHHHHHHHHHHHHHHhhh------hhCchHHHHHHHHHHHHhccccc-CchH
Confidence 57799999999999997 44555677777999999874 56999999999999988876544 3467
Q ss_pred HHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhHHHHHH-HHHhHHHHHHHHhCCCc--chh
Q 006253 524 RTAAYETLNEVVRCST-DETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQG-LLCGCLQVIIQKLGSSE--QTK 599 (653)
Q Consensus 524 ~~~~~~~l~~l~~~~~-~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~-~~~~~i~~i~~~~~~~~--~~~ 599 (653)
|..++.++|.+.+... ++...|+..+++.++..++.+.+... ++.+. .+|. ..+.+++++..++.... +..
T Consensus 607 ~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~~~i---~~~e~--~l~~~~~l~~iS~LftSL~~~~~~~d~ 681 (982)
T KOG2022|consen 607 RLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLAPGI---DDQEN--HLRIAFQLNTISALFTSLINKKDIIDT 681 (982)
T ss_pred HHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCC---CCHHH--HHHHHHHHHHHHHHHhccCCCCccccc
Confidence 7899999999998876 44667999999999998887654221 22222 2222 34688888888865431 110
Q ss_pred h------------HhhHhHHHHHHHHHHHHhc--cCcchhhhHHHHHHHHHHHhccCC-ccc-hhh
Q 006253 600 Y------------VFMQYADQMMGLFLRVFAI--RSATAHEEAMLAIGALAYATGLWR-IRY-CLI 649 (653)
Q Consensus 600 ~------------~~~~~~~~i~~~l~~~l~~--~~~~~~e~~~~~~~~l~~~~~~~f-~~y-~~i 649 (653)
+ -+.....++++.+-+.++- .+..+.+.+...++.=..-.++.| .|+ |.+
T Consensus 682 d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l 747 (982)
T KOG2022|consen 682 DQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSL 747 (982)
T ss_pred cchhhhccccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhccccccccchhhhHHHH
Confidence 0 0222344455544444442 234455555555554455566667 566 444
No 21
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=3.3e-15 Score=145.99 Aligned_cols=480 Identities=14% Similarity=0.183 Sum_probs=309.5
Q ss_pred HHHHHHHHHHHhhCcchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhccCCChHHHHHHHHHHHHh
Q 006253 21 KQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKT 100 (653)
Q Consensus 21 ~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~ 100 (653)
.+|..+|.+|+++ ..-+..+-+++.. ..+.....+|+..+++.+.+ .|..+++......|+.++..
T Consensus 2 ~~A~~~L~~FQ~S--~~aW~i~~eiL~~-~~~~~~~~FaaqTlr~Ki~~-----------~F~~Lp~~~~~slrdsl~th 67 (559)
T KOG2081|consen 2 EKANNWLGNFQKS--NDAWQICEEILSQ-KCDVEALLFAAQTLRNKIQY-----------DFSELPPLTHASLRDSLITH 67 (559)
T ss_pred chHhHHHHHhCCC--hHHHHHHHHHHcc-cchHHHHHHHHHHHHHHHHh-----------hHHhcCcchhHHHHHHHHHH
Confidence 4688999999998 6777777777776 47889999999999998874 56778888888888866665
Q ss_pred cC---CCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhccccc--c-------
Q 006253 101 LS---SPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAV--E------- 168 (653)
Q Consensus 101 l~---~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~--~------- 168 (653)
++ +..+.+|.+++.+++.+|-+. | .|.+.++.+++.+.+..+. ...-+.+|..+-++..+-.. +
T Consensus 68 l~~l~~~~~~i~tQL~vavA~Lal~~-~--~W~n~I~e~v~~~~~~~~~-~~~lLeiL~VlPEE~~~~~~~~~a~Rr~e~ 143 (559)
T KOG2081|consen 68 LKELHDHPDVIRTQLAVAVAALALHM-P--EWVNPIFELVRALSNKHPA-VPILLEILKVLPEETRDIRLTVGANRRHEF 143 (559)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHHh-H--hhcchHHHHHHHhhcCCcc-HHHHHHHHHhCcHhhcchhhhhhhhhHHHH
Confidence 43 333499999999999999886 4 7999888888888776665 34455566555444321111 0
Q ss_pred ----hhhHhHHHHHHHhcccCCCCC-HHHHHHHHHHHHHHHHh--h-hhhcCCh--------------h-HH---H----
Q 006253 169 ----QDHVNKILTAVVQGMNASESN-NDVRLAATRALYNALGF--A-QANFSND--------------M-ER---D---- 218 (653)
Q Consensus 169 ----~~~~~~l~~~l~~~l~~~~~~-~~vr~~a~~~l~~~~~~--~-~~~~~~~--------------~-~~---~---- 218 (653)
......++..+..++..++.+ ...-..+++|++++... + ++.+... . +. +
T Consensus 144 ~~~l~~~~~~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d~v~a~~pLi~l~F~sl~~~~lhe~At~cic~ 223 (559)
T KOG2081|consen 144 IDELAAQVSKVLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPDQVLASFPLITLAFRSLSDDELHEEATECICA 223 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHHHHHhhhHHHHHHHHHcccchhhHHHHHHHHH
Confidence 123455666666666654444 56667788888876651 1 1111000 0 00 0
Q ss_pred ----------------------HHHHHHHh-hhcCCcHHHHHHHHHHHHHHHHHhHHhhHH---hHHHHHHHHHHHhhcC
Q 006253 219 ----------------------YIMRVVCE-ATLSPEVKIRQAAFECLVAISSTYYEKLAP---YIQDIFNITAKAVRED 272 (653)
Q Consensus 219 ----------------------~il~~l~~-~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~---~l~~l~~~~~~~~~~~ 272 (653)
.+++.... .....|.+...++++.+..+.+.+...+.. +.-.++..++-...+.
T Consensus 224 ll~~~~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~h~ 303 (559)
T KOG2081|consen 224 LLYCSLDRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAGHN 303 (559)
T ss_pred HHHHhhhhhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhccCC
Confidence 01111111 112355666667777777777765543321 1223444555556677
Q ss_pred ChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccC-C--ccCCCccccHhhhH
Q 006253 273 EEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEE-D--QDQDEGAWNIAMAG 349 (653)
Q Consensus 273 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~e-d--~~~d~~~~~~r~~a 349 (653)
+.++...++.+|..+.+.-.-..+. ......++++.+++..+........+ + .|+.++-...|...
T Consensus 304 ~~evie~SF~fW~~lse~l~~~~~~-----------~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v 372 (559)
T KOG2081|consen 304 DTEVIEASFNFWYSLSEELTLTDDD-----------EALGIFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKV 372 (559)
T ss_pred chhhhhhhHHhhhhhHHHHhccccH-----------HHHHHhHHHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHH
Confidence 8899999999999998754211100 13345688888888888887765541 1 12333345788889
Q ss_pred HHHHHHHHhhcCC-CchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHH
Q 006253 350 GTCLGLVARTVGD-DIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKD 428 (653)
Q Consensus 350 ~~~L~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~ 428 (653)
.+.+..++...|+ +.+..+...+.+ .+++|+.-+|+++.+..++.+.. ..-.+.+++++..+... +....+|+
T Consensus 373 ~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~-~~e~~i~pevl~~i~nl---p~Q~~~~~ 446 (559)
T KOG2081|consen 373 GDVLKDVAFIIGSDECLKQMYIRLKE--NNASWEEVEAALFILRAVAKNVS-PEENTIMPEVLKLICNL---PEQAPLRY 446 (559)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCC-ccccchHHHHHHHHhCC---ccchhHHH
Confidence 9999999888874 556655555544 46789999999999999998874 33345566666665542 33344999
Q ss_pred HHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccchhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHH
Q 006253 429 TTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQA 508 (653)
Q Consensus 429 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~ 508 (653)
+++..+|.+++|... ....+..++..+...+... +....++.++..+|..+.. .+.++++.+...
T Consensus 447 ts~ll~g~~~ew~~~--------~p~~le~v~~~~~~~~~~~-~~as~~a~~~~~i~~~c~~------~~~~l~~~~~~l 511 (559)
T KOG2081|consen 447 TSILLLGEYSEWVEQ--------HPELLEPVLRYIRQGLQLK-RLASAAALAFHRICSACRV------QMTCLIPSLLEL 511 (559)
T ss_pred HHHHHHHHHHHHHHh--------CcHHHHHHHHHHHHHhhhc-chhHHHHHHHHHHHHHHHH------HhhhhhHHHHHH
Confidence 999999999999973 5677888888887777643 3777778888888877653 244444444443
Q ss_pred HHHhccccccchhchHHHHHHHHHHHHHhcccc-cHHHHHHHHHHH
Q 006253 509 LLTVTHREDAGESRLRTAAYETLNEVVRCSTDE-TAPMVMQLVPLI 553 (653)
Q Consensus 509 L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~l~~~l 553 (653)
+....+...+ .... ..+..++.++...+.. ..+.+.++....
T Consensus 512 ~~~l~~~~~~--~e~a-~l~~~~s~i~~~lp~~k~~~~~~el~~~~ 554 (559)
T KOG2081|consen 512 IRSLDSTQIN--EEAA-CLLQGISLIISNLPAHKAKIALEELCEPQ 554 (559)
T ss_pred HHHHHHHhcc--HHHH-HHHHHHHHHHhcCCHhhhhHHHHHHhhHH
Confidence 3332222211 1223 2778888888888864 455666655443
No 22
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=4e-16 Score=154.67 Aligned_cols=469 Identities=16% Similarity=0.166 Sum_probs=328.6
Q ss_pred HHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHhhhcCC-CCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccc
Q 006253 91 AQIKSFILKTLSSP-AHDARSTASQVVAKVAGIELPH-KQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVE 168 (653)
Q Consensus 91 ~~i~~~ll~~l~~~-~~~vr~~~~~~l~~ia~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~ 168 (653)
..+++..-+.|++. +..+|+......+.++.+.... .+--.++..+++.++.+.+.++++...|+..+......
T Consensus 54 ~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~---- 129 (569)
T KOG1242|consen 54 LNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDPRPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKG---- 129 (569)
T ss_pred HHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccccCcchhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhc----
Confidence 44555555666654 5789999988889999876432 24457889999999999999999999999887665421
Q ss_pred hhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHh-hhhhcCChhHHHHHHHHHHhhhcCCcHH-HHHHHHHHHHHH
Q 006253 169 QDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGF-AQANFSNDMERDYIMRVVCEATLSPEVK-IRQAAFECLVAI 246 (653)
Q Consensus 169 ~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~-~~~~~~~~~~~~~il~~l~~~~~~~~~~-~~~~~~~~l~~l 246 (653)
.....+.+.+.+.++ .+...-|..+...+..++.- +-..+. ...++..+.....+.... .|..+.-++...
T Consensus 130 -~~~~~~l~~l~~ll~--~~~~~~~~~aa~~~ag~v~g~~i~~~~----~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~ 202 (569)
T KOG1242|consen 130 -LSGEYVLELLLELLT--STKIAERAGAAYGLAGLVNGLGIESLK----EFGFLDNLSKAIIDKKSALNREAALLAFEAA 202 (569)
T ss_pred -cCHHHHHHHHHHHhc--cccHHHHhhhhHHHHHHHcCcHHhhhh----hhhHHHHHHHHhcccchhhcHHHHHHHHHHH
Confidence 223445555566666 35556666666666554431 111111 145777777777664433 333466666666
Q ss_pred HHHhHHhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHH
Q 006253 247 SSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLL 326 (653)
Q Consensus 247 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~ 326 (653)
....+..++||+..++|.++..+.+....+|..+.+....+...-. ..-++ .++|.++
T Consensus 203 ~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~------------------~~aVK----~llpsll 260 (569)
T KOG1242|consen 203 QGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLS------------------AYAVK----LLLPSLL 260 (569)
T ss_pred HHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcC------------------cchhh----HhhhhhH
Confidence 6677788899999999999999999999999998877666665311 01123 3344444
Q ss_pred HHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCC---CchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcc
Q 006253 327 ETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGD---DIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKL 403 (653)
Q Consensus 327 ~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~---~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~ 403 (653)
..+. +..|+...++.+.++.++.+.+. ..+|.++|.+.+.++|..+++|.++..++-.++.-.+ +
T Consensus 261 ~~l~---------~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svid-N-- 328 (569)
T KOG1242|consen 261 GSLL---------EAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVID-N-- 328 (569)
T ss_pred HHHH---------HHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhc-c--
Confidence 4332 12599999999999999998874 5689999999999999999999999998877766432 1
Q ss_pred hHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc-hhhHHHHHHHHHH
Q 006253 404 VPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALY 482 (653)
Q Consensus 404 ~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~ 482 (653)
+.+..++|.++.++ .|+...+.... ..|+. ..+.. ....+-+..++|.+.+.+.+ +...+..++..+.
T Consensus 329 -~dI~~~ip~Lld~l-~dp~~~~~e~~-~~L~~--ttFV~------~V~~psLalmvpiL~R~l~eRst~~kr~t~~Iid 397 (569)
T KOG1242|consen 329 -PDIQKIIPTLLDAL-ADPSCYTPECL-DSLGA--TTFVA------EVDAPSLALMVPILKRGLAERSTSIKRKTAIIID 397 (569)
T ss_pred -HHHHHHHHHHHHHh-cCcccchHHHH-Hhhcc--eeeee------eecchhHHHHHHHHHHHHhhccchhhhhHHHHHH
Confidence 23667789999999 88875555443 23322 11111 13457888999999999986 6777788999999
Q ss_pred HHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHH
Q 006253 483 FLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLE 562 (653)
Q Consensus 483 ~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 562 (653)
++|..+.+ +..+.||++.++|.+-..+.+.. +++|..+..+++.+.+..|+. ++....|.+.+.+....
T Consensus 398 Nm~~LveD----p~~lapfl~~Llp~lk~~~~d~~---PEvR~vaarAL~~l~e~~g~~---~f~d~~p~l~e~~~~~k- 466 (569)
T KOG1242|consen 398 NMCKLVED----PKDLAPFLPSLLPGLKENLDDAV---PEVRAVAARALGALLERLGEV---SFDDLIPELSETLTSEK- 466 (569)
T ss_pred HHHHhhcC----HHHHhhhHHHHhhHHHHHhcCCC---hhHHHHHHHHHHHHHHHHHhh---cccccccHHHHhhccch-
Confidence 99998754 68899999999999999988773 689999999999999999975 33666666766554321
Q ss_pred hhcCChhHHHhHHHHHHHHHhHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhcc--CcchhhhHHHHHHHHHHHhc
Q 006253 563 AQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIR--SATAHEEAMLAIGALAYATG 640 (653)
Q Consensus 563 ~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~--~~~~~e~~~~~~~~l~~~~~ 640 (653)
.+. -+....+.++.+...+|-. +...++...+...... +..+|+..+..++-+-...|
T Consensus 467 ------~~~-----~~~g~aq~l~evl~~~~v~---------~~~~~~~~~~a~~~~~~~~~~~~dg~~~~~~~lp~~~~ 526 (569)
T KOG1242|consen 467 ------SLV-----DRSGAAQDLSEVLAGLGVE---------KVEDILPEILANASSVLIDERIRDGVIWLFYLLPYIFG 526 (569)
T ss_pred ------hhh-----hhHHHhhhHHHHHhcccch---------HHHHHHHHHHHHHhhccchhhhccCeeehhhccchhhh
Confidence 011 1123455566666666644 4444555554444443 33477788888888999999
Q ss_pred cCCccc
Q 006253 641 LWRIRY 646 (653)
Q Consensus 641 ~~f~~y 646 (653)
.+|.||
T Consensus 527 ~~~~~y 532 (569)
T KOG1242|consen 527 FQFQPY 532 (569)
T ss_pred HHhHHH
Confidence 999999
No 23
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=4.9e-15 Score=147.02 Aligned_cols=501 Identities=16% Similarity=0.150 Sum_probs=339.9
Q ss_pred chHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 006253 36 PGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQV 115 (653)
Q Consensus 36 ~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~ 115 (653)
..+.+..-+-+.+ ......|..-.++-+..-.. .| ..+..-..+...+++.+..+.+.+|+..+.|
T Consensus 54 ~~l~~~~~~~l~~-~~~~~~~~~~~v~~~~~a~~-----------~~--~~d~~~~~~~~~~~~~~~tps~~~q~~~~~~ 119 (569)
T KOG1242|consen 54 LNLKPCFEQRLNS-LHNDNLRNNVVVLEGTLAFH-----------LQ--IVDPRPISIIEILLEELDTPSKSVQRAVSTC 119 (569)
T ss_pred HHHHHHHHHHhcc-chhHHHhhhhHHHHHHHHHh-----------cc--ccCcchhHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 3444444455554 44667776555544433222 22 1222334577889999999999999999999
Q ss_pred HHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHH
Q 006253 116 VAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLA 195 (653)
Q Consensus 116 l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~ 195 (653)
+..+....-. ..-..+.+.+.+.++.++...|..+...+..+.....-..+ .-..++..+...+.+ ..+...|..
T Consensus 120 l~~~~~~~~~-~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~---~~~~~l~~l~~ai~d-k~~~~~re~ 194 (569)
T KOG1242|consen 120 LPPLVVLSKG-LSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESL---KEFGFLDNLSKAIID-KKSALNREA 194 (569)
T ss_pred hhhHHHHhhc-cCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhh---hhhhHHHHHHHHhcc-cchhhcHHH
Confidence 9988655422 23456778888888888888888888888877776521111 223455666666663 233344444
Q ss_pred HHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhcCChh
Q 006253 196 ATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEP 275 (653)
Q Consensus 196 a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 275 (653)
+.-++..........++ .+.-.+++.++....+....+|.++..+...+.+..+.+ -++.++|.++..+.+..+.
T Consensus 195 ~~~a~~~~~~~Lg~~~E--Pyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~---aVK~llpsll~~l~~~kWr 269 (569)
T KOG1242|consen 195 ALLAFEAAQGNLGPPFE--PYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAY---AVKLLLPSLLGSLLEAKWR 269 (569)
T ss_pred HHHHHHHHHHhcCCCCC--chHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcc---hhhHhhhhhHHHHHHHhhh
Confidence 55555554444433333 344567777777777888999999999999888766422 2455666666666555777
Q ss_pred HHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHH
Q 006253 276 VALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGL 355 (653)
Q Consensus 276 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~ 355 (653)
.+..+++.++.++...+ ......++.++|.+.+.|.+ ..-.+|+++..|+..
T Consensus 270 tK~aslellg~m~~~ap-------------------~qLs~~lp~iiP~lsevl~D---------T~~evr~a~~~~l~~ 321 (569)
T KOG1242|consen 270 TKMASLELLGAMADCAP-------------------KQLSLCLPDLIPVLSEVLWD---------TKPEVRKAGIETLLK 321 (569)
T ss_pred hHHHHHHHHHHHHHhch-------------------HHHHHHHhHhhHHHHHHHcc---------CCHHHHHHHHHHHHH
Confidence 78889998888776432 34566677888998888762 224689999999999
Q ss_pred HHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 006253 356 VARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLG 435 (653)
Q Consensus 356 l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~ 435 (653)
++......-+..++|.+.+.+.+++-...+ ++..+++-. +......+-+.-++|.+.+.+ ++.+...++.++..++
T Consensus 322 ~~svidN~dI~~~ip~Lld~l~dp~~~~~e-~~~~L~~tt--FV~~V~~psLalmvpiL~R~l-~eRst~~kr~t~~Iid 397 (569)
T KOG1242|consen 322 FGSVIDNPDIQKIIPTLLDALADPSCYTPE-CLDSLGATT--FVAEVDAPSLALMVPILKRGL-AERSTSIKRKTAIIID 397 (569)
T ss_pred HHHhhccHHHHHHHHHHHHHhcCcccchHH-HHHhhccee--eeeeecchhHHHHHHHHHHHH-hhccchhhhhHHHHHH
Confidence 999987777888889998999988755544 334443311 111223466888999999999 9999999999999999
Q ss_pred HHHhhhccCCCCccccCccchHHHHHHHHHhccc-hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhcc
Q 006253 436 RMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTH 514 (653)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~ 514 (653)
+++....+ |....+|++.++|.+-..+.+ .|.||..+..|++.+.+.++.. +++...|.+...+.
T Consensus 398 Nm~~LveD-----p~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~---------~f~d~~p~l~e~~~ 463 (569)
T KOG1242|consen 398 NMCKLVED-----PKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEV---------SFDDLIPELSETLT 463 (569)
T ss_pred HHHHhhcC-----HHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhh---------cccccccHHHHhhc
Confidence 99998854 445788999999999999887 6999999999999999987641 12666777776665
Q ss_pred ccccchhchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHhHHHHHHHHhCC
Q 006253 515 REDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGS 594 (653)
Q Consensus 515 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~ 594 (653)
.... ..-+..+...++.+....+. .++..+++.++...... ..+ ..++...+..+..+-...+.
T Consensus 464 ~~k~--~~~~~g~aq~l~evl~~~~v---~~~~~~~~~~~a~~~~~-------~~~----~~~~dg~~~~~~~lp~~~~~ 527 (569)
T KOG1242|consen 464 SEKS--LVDRSGAAQDLSEVLAGLGV---EKVEDILPEILANASSV-------LID----ERIRDGVIWLFYLLPYIFGF 527 (569)
T ss_pred cchh--hhhhHHHhhhHHHHHhcccc---hHHHHHHHHHHHHHhhc-------cch----hhhccCeeehhhccchhhhH
Confidence 5442 22334556666666665553 46677777766544332 111 24555566666666666666
Q ss_pred CcchhhHhhHhHHHHHHHHHHHHhccCcchhhhH
Q 006253 595 SEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEA 628 (653)
Q Consensus 595 ~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~e~~ 628 (653)
. |.+|+.++++.+++.+.+.+...+..+
T Consensus 528 ~------~~~yi~~i~~~~~k~~ad~de~~~~~~ 555 (569)
T KOG1242|consen 528 Q------FQPYIHEILDEFLKGLADNDEKGRDTA 555 (569)
T ss_pred H------hHHHHHHHHHHHHHHhhhcCCccccch
Confidence 6 999999999999999997654444443
No 24
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.77 E-value=4e-15 Score=145.46 Aligned_cols=575 Identities=14% Similarity=0.140 Sum_probs=343.3
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHhh-CcchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhH----HHh
Q 006253 4 EVTQILLNAQSVDGTVRKQAEESLKQYQEQ-NLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRK----FEL 78 (653)
Q Consensus 4 ~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~-~~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~----~~~ 78 (653)
++..+|-..-++++..|+.+-..|..-..+ .+.-....++.++.+.+.+++.|+....++.+.+.....-++ +..
T Consensus 169 ~v~rllLkvKNG~~~mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~LeDqerhl~vk~idr~Ly~lddl~~pyvhkIL 248 (975)
T COG5181 169 DVYRLLLKVKNGGKRMRMEGLRILTDKAVNFGAAAVFNKVLPMLMSRELEDQERHLVVKLIDRLLYGLDDLKVPYVHKIL 248 (975)
T ss_pred hHHHHHhhcccCCchhhHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHhcccccccceeeEE
Confidence 567788888899999999999999753332 345566677788887778899999888877776654322110 000
Q ss_pred hhhc-cCCChHHHH-----HHHHHHHHh--c-----------CCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHh
Q 006253 79 VQRW-LSLDSSVKA-----QIKSFILKT--L-----------SSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSN 139 (653)
Q Consensus 79 ~~~~-~~l~~~~~~-----~i~~~ll~~--l-----------~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~ 139 (653)
...- ..+.++.+. +|...|... | .+.++.||+..+.+++.+|.+. ..++++|+|...
T Consensus 249 vVv~pllided~~~r~~g~eii~nL~~~~Gl~~~vs~mrpDi~~~deYVRnvt~ra~~vva~al----gv~~llpfl~a~ 324 (975)
T COG5181 249 VVVGPLLIDEDLKRRCMGREIILNLVYRCGLGFSVSSMRPDITSKDEYVRNVTGRAVGVVADAL----GVEELLPFLEAL 324 (975)
T ss_pred EEeeccccCccHHHhcccHHHHHHHHHHhccceeeeeccCCcccccHHHHHHHHHHHHHHHHhh----CcHHHHHHHHHH
Confidence 0000 112333221 233333321 2 2346899999999999999886 458999999999
Q ss_pred hcCC-ChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHH
Q 006253 140 IHQL-PPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERD 218 (653)
Q Consensus 140 l~~~-~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 218 (653)
+.|- ++..|..++.+...|+..+....+ .|+..++..+..++. |.+..+|.-+..+++.+.+.... +. ....+
T Consensus 325 c~SrkSw~aRhTgiri~qqI~~llG~s~l--~hl~~l~~ci~~~l~--D~~~~vRi~tA~alS~lae~~~P-yg-ie~fd 398 (975)
T COG5181 325 CGSRKSWEARHTGIRIAQQICELLGRSRL--SHLGPLLKCISKLLK--DRSRFVRIDTANALSYLAELVGP-YG-IEQFD 398 (975)
T ss_pred hcCccchhhhchhhHHHHHHHHHhCccHH--hhhhhHHHHHHHHhh--ccceeeeehhHhHHHHHHHhcCC-cc-hHHHH
Confidence 9886 899999999999999998855555 788999999999999 78888898888888876653211 11 01123
Q ss_pred HHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH-hHHhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHh----
Q 006253 219 YIMRVVCEATLSPEVKIRQAAFECLVAISST-YYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEID---- 293 (653)
Q Consensus 219 ~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---- 293 (653)
.++..|-.-.+........+.+++.+.++-. .|++...+-.+.+.++++.+++++++.+...+.+.......+.+
T Consensus 399 ~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~ 478 (975)
T COG5181 399 EVLCPLWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWK 478 (975)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHH
Confidence 4444443333322223333444444433322 23444455567888888899988888776655443332221110
Q ss_pred hhhhcCCCCCC-----CCCC--chhh---HHHhhh------hhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHH
Q 006253 294 ILEEYGGDFSG-----DSDI--PCFY---FIKHAL------PVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVA 357 (653)
Q Consensus 294 ~~~~~~~~~~~-----~~~~--~~~~---~~~~~l------~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~ 357 (653)
+.++..+.... +++. +..+ +....+ +.++.-+++..+ | +.-..|+.++.+.+++.
T Consensus 479 lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~v~~kil~~~~----D-----e~ep~r~m~a~~vsri~ 549 (975)
T COG5181 479 LRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPRVSRKILEYYS----D-----EPEPYRKMNAGLVSRIF 549 (975)
T ss_pred HHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCChHHHHHHHhhcc----C-----CcchhhhhhhHHHHHHH
Confidence 00110000000 0000 0000 000000 001111111111 0 11245777777777777
Q ss_pred hhcCCC-----chhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHH
Q 006253 358 RTVGDD-----IVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAW 432 (653)
Q Consensus 358 ~~~~~~-----~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~ 432 (653)
..+|.. ....+...+...++.++-.+ .-.+-|++.+..+. .....+++..++..++..| +++.|.||..|+.
T Consensus 550 ~~lg~~~~dErleerl~d~il~Afqeq~~t~-~~il~~f~tv~vsl-~~r~kp~l~~ivStiL~~L-~~k~p~vR~~aad 626 (975)
T COG5181 550 SRLGRLGFDERLEERLYDSILNAFQEQDTTV-GLILPCFSTVLVSL-EFRGKPHLSMIVSTILKLL-RSKPPDVRIRAAD 626 (975)
T ss_pred HhcccccccHHHHHHHHHHHHHHHHhccccc-cEEEecccceeeeh-hhccCcchHHHHHHHHHHh-cCCCccHHHHHHH
Confidence 666521 11122222222222211111 11233455444433 2345788999999999999 9999999999999
Q ss_pred HHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc-hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHH
Q 006253 433 TLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLT 511 (653)
Q Consensus 433 ~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~ 511 (653)
..|.++..+.. + .....+..+=.+|.+.++. .+.|--....|++.+..... -..++|-+..|+|.|..
T Consensus 627 l~~sl~~vlk~-c-----~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~-----~~~mqpPi~~ilP~ltP 695 (975)
T COG5181 627 LMGSLAKVLKA-C-----GETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHR-----FRSMQPPISGILPSLTP 695 (975)
T ss_pred HHHHHHHHHHh-c-----chHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhc-----ccccCCchhhccccccH
Confidence 99998887642 1 1245666777788888885 67776665666666655432 35688999999999999
Q ss_pred hccccccchhchHHHHHHHHHHHHHhcccccH--HHHHHHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHhHHHHHH
Q 006253 512 VTHREDAGESRLRTAAYETLNEVVRCSTDETA--PMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVII 589 (653)
Q Consensus 512 ~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~--~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~ 589 (653)
++.+.. .++....+..++.++...++... .++...+ .++..|... . .++|..+.+++|.|+
T Consensus 696 ILrnkh---~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcf-eLvd~Lks~---------n----KeiRR~A~~tfG~Is 758 (975)
T COG5181 696 ILRNKH---QKVVANTIALVGTICMNSPEYIGVREWMRICF-ELVDSLKSW---------N----KEIRRNATETFGCIS 758 (975)
T ss_pred hhhhhh---HHHhhhHHHHHHHHHhcCcccCCHHHHHHHHH-HHHHHHHHh---------h----HHHHHhhhhhhhhHH
Confidence 998764 67888889999999988887542 2444322 233444431 1 257778999999999
Q ss_pred HHhCCCcchhhHhhHhHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHhc
Q 006253 590 QKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATG 640 (653)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~e~~~~~~~~l~~~~~ 640 (653)
+++|+++ ++..+++.|+..+...|-+...+++-+++.+|
T Consensus 759 ~aiGPqd------------vL~~LlnnLkvqeRq~RvctsvaI~iVae~cg 797 (975)
T COG5181 759 RAIGPQD------------VLDILLNNLKVQERQQRVCTSVAISIVAEYCG 797 (975)
T ss_pred hhcCHHH------------HHHHHHhcchHHHHHhhhhhhhhhhhhHhhcC
Confidence 9999774 45555555555444444444445555555444
No 25
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.72 E-value=5.2e-14 Score=160.52 Aligned_cols=579 Identities=13% Similarity=0.107 Sum_probs=345.4
Q ss_pred hHHHHHHHHhcCC--ChHHHHHHHHHHHHHHhhC---------cchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhh
Q 006253 3 AEVTQILLNAQSV--DGTVRKQAEESLKQYQEQN---------LPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKE 71 (653)
Q Consensus 3 ~~l~~ll~~~~s~--d~~~r~~A~~~L~~~~~~~---------~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~ 71 (653)
+++..+++.+.++ +++.|++|...|.++.+.+ ..++++.|+..|.++ +..+|..|+-.+.+.-.. .
T Consensus 13 ~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg--~~~vk~nAaaaL~nLS~~-e 89 (2102)
T PLN03200 13 ASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSG--TLGAKVNAAAVLGVLCKE-E 89 (2102)
T ss_pred HHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCC--CHHHHHHHHHHHHHHhcC-H
Confidence 4678899999876 7789999999998876653 256788899999853 678888887666664332 1
Q ss_pred hhhHHHhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCC------chHHHHHHHhhcCCC-
Q 006253 72 QHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQW------PELIGALLSNIHQLP- 144 (653)
Q Consensus 72 ~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~------~~l~~~l~~~l~~~~- 144 (653)
..+. .. + .....+.|+..|.+.+...|..++.+|..++......+.| +..+|.|...+++++
T Consensus 90 ~nk~-~I------v----~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk 158 (2102)
T PLN03200 90 DLRV-KV------L----LGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNK 158 (2102)
T ss_pred HHHH-HH------H----HcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCch
Confidence 1000 00 0 1233456888888888999999999999998752101122 577889999988763
Q ss_pred --hhHHHHHHHHHHHHHhhhcccccchhh-HhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHH
Q 006253 145 --PHTKQATLETLGYICEEVSSDAVEQDH-VNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIM 221 (653)
Q Consensus 145 --~~~~~~~l~~l~~l~~~~~~~~~~~~~-~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il 221 (653)
..++..+..+|..++..- ...- +.. -...+|.++..+. ++++.++..|+.++..++...++... .......+
T Consensus 159 ~d~~L~~~Av~AL~nLs~~~-en~~-~~IIeaGaVp~LV~LLs--S~d~~lQ~eAa~aLa~Lass~ee~~~-aVIeaGaV 233 (2102)
T PLN03200 159 QDKVVEGLLTGALRNLCGST-DGFW-SATLEAGGVDILVKLLS--SGNSDAQANAASLLARLMMAFESSIS-KVLDAGAV 233 (2102)
T ss_pred hhHHHHHHHHHHHHHHhcCc-cchH-HHHHHcCCHHHHHHHHc--CCCHHHHHHHHHHHHHHHcCChHHHH-HHHHCCCH
Confidence 334556678888888754 2211 111 2347788888888 57789999999988876643222110 00112357
Q ss_pred HHHHhhhcC-CcHHHHHHHHHHHHHHHHHhHHhhHHhHH-HHHHHHHHHhhcCC---------hhHHHHHHHhHHHhhHH
Q 006253 222 RVVCEATLS-PEVKIRQAAFECLVAISSTYYEKLAPYIQ-DIFNITAKAVREDE---------EPVALQAIEFWSSVCDE 290 (653)
Q Consensus 222 ~~l~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~~~---------~~~~~~a~~~~~~~~~~ 290 (653)
+.+..++.+ .+..+|..+..+|..++....+.-...+. ..+|.+++.+...+ ...+.+|+..+.++|..
T Consensus 234 P~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg 313 (2102)
T PLN03200 234 KQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG 313 (2102)
T ss_pred HHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC
Confidence 788888864 56789999999999999865443222222 34555555554332 23467788888887753
Q ss_pred HHhhhhhc--------------------------CCCCCCCCC-Cc---h-h---hHHH---h--hhhhhHHHHH-----
Q 006253 291 EIDILEEY--------------------------GGDFSGDSD-IP---C-F---YFIK---H--ALPVLVPLLL----- 326 (653)
Q Consensus 291 ~~~~~~~~--------------------------~~~~~~~~~-~~---~-~---~~~~---~--~l~~l~~~l~----- 326 (653)
...+.... .+....... +. + . ++.+ + ....+.+.+.
T Consensus 314 ~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN 393 (2102)
T PLN03200 314 MSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGN 393 (2102)
T ss_pred chhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCC
Confidence 21100000 000000000 00 0 0 0000 0 0011122221
Q ss_pred ----HHhhhccCCcc------CCCccccHhhhHHHHHHHHHhhcCC---Cch-hchHHHHHhhhcCcchhhHHHHHHHHH
Q 006253 327 ----ETLLKQEEDQD------QDEGAWNIAMAGGTCLGLVARTVGD---DIV-PLVMPFVEENITKQEWRQREAATYAFG 392 (653)
Q Consensus 327 ----~~l~~~~ed~~------~d~~~~~~r~~a~~~L~~l~~~~~~---~~~-~~l~~~l~~~l~~~~~~~r~aal~~l~ 392 (653)
+.+.+ .|-. -.......+..+..+|..++..-.+ .+. .-.+|.+.+.+.+++...|+.++++++
T Consensus 394 ~~l~~~L~~--~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~ 471 (2102)
T PLN03200 394 AYLSRKLNH--AEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLA 471 (2102)
T ss_pred hHHHHHHHh--ccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 11111 1100 0001124667777777777744221 111 123555666777778889999999999
Q ss_pred HhhcCCCCCcchHHH-HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccch--HHHHHHHHHhccc
Q 006253 393 SILEGPSPEKLVPLV-NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNC--QQIISVLLQSMKD 469 (653)
Q Consensus 393 ~i~~~~~~~~~~~~l-~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~--~~il~~l~~~l~d 469 (653)
.++.+.. +...... ...+|.++..| .++++.+|..|+|+|++++..-. .....+ ...+|.|++.+.+
T Consensus 472 nLa~~nd-enr~aIieaGaIP~LV~LL-~s~~~~iqeeAawAL~NLa~~~~--------qir~iV~~aGAIppLV~LL~s 541 (2102)
T PLN03200 472 ILTDEVD-ESKWAITAAGGIPPLVQLL-ETGSQKAKEDSATVLWNLCCHSE--------DIRACVESAGAVPALLWLLKN 541 (2102)
T ss_pred HHHcCCH-HHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhCCcH--------HHHHHHHHCCCHHHHHHHHhC
Confidence 9987642 2222222 25689999999 99999999999999999987421 112223 2567788888876
Q ss_pred -hhhHHHHHHHHHHHHHhcccCCCCCCCCCchh-------------------------------------HHHHHHHHHH
Q 006253 470 -VPNVAEKACGALYFLAQGFEDAISPSSPLTPF-------------------------------------FQEIVQALLT 511 (653)
Q Consensus 470 -~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~-------------------------------------l~~i~~~L~~ 511 (653)
+++++..|+++|.+++..-.. ..+.++ -...++.|..
T Consensus 542 gd~~~q~~Aa~AL~nLi~~~d~-----~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~ 616 (2102)
T PLN03200 542 GGPKGQEIAAKTLTKLVRTADA-----ATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQ 616 (2102)
T ss_pred CCHHHHHHHHHHHHHHHhccch-----hHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHH
Confidence 688999999999998753110 100000 0123445555
Q ss_pred hccccccchhchHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHhHHHHHHH
Q 006253 512 VTHREDAGESRLRTAAYETLNEVVRCSTDET-APMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQ 590 (653)
Q Consensus 512 ~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~ 590 (653)
++...+ ...++.+..+|..+...-.+.. .-.....+|+++..+... +++ ++..+..++++++.
T Consensus 617 LL~sgs---~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~-------~~~------v~keAA~AL~nL~~ 680 (2102)
T PLN03200 617 LLSSSK---EETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNN-------TEA------VATQSARALAALSR 680 (2102)
T ss_pred HHcCCC---HHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcC-------ChH------HHHHHHHHHHHHHh
Confidence 554442 4566677777777765433221 123345667777766641 222 34457778888887
Q ss_pred HhCCCcchhhHhhHhH-HHHHHHHHHHHhccCcchhhhHHHHHHHHHHH
Q 006253 591 KLGSSEQTKYVFMQYA-DQMMGLFLRVFAIRSATAHEEAMLAIGALAYA 638 (653)
Q Consensus 591 ~~~~~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~~e~~~~~~~~l~~~ 638 (653)
...... ...++ ..+++.+++.|+..+..+++.++.++++++..
T Consensus 681 ~~~~~q-----~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~ 724 (2102)
T PLN03200 681 SIKENR-----KVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSD 724 (2102)
T ss_pred CCCHHH-----HHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcC
Confidence 432221 12223 34888899999998889999999999998763
No 26
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.72 E-value=3.9e-13 Score=134.42 Aligned_cols=461 Identities=13% Similarity=0.179 Sum_probs=299.7
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCC--CCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchh
Q 006253 93 IKSFILKTLSSPAHDARSTASQVVAKVAGIELPH--KQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQD 170 (653)
Q Consensus 93 i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~--~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~ 170 (653)
+.+.+-+++.++...||...|.+++.+|+.-.|- ..+..++.-|....++.......+.+++++.++...+++.- .-
T Consensus 554 lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya-~y 632 (1172)
T KOG0213|consen 554 LVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYA-SY 632 (1172)
T ss_pred HHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHH-HH
Confidence 4445556777888999999999999999987663 25566777777766666666666778888888877644433 33
Q ss_pred hHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHh------------------------
Q 006253 171 HVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCE------------------------ 226 (653)
Q Consensus 171 ~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~------------------------ 226 (653)
+...++-.+..-+. .++.+.++..++.+.+++..-. .+..-.+..+++.++.
T Consensus 633 yTrevmlil~rEf~--sPDeemkkivLKVv~qcc~t~G--v~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~i 708 (1172)
T KOG0213|consen 633 YTREVMLILIREFG--SPDEEMKKIVLKVVKQCCATDG--VEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEI 708 (1172)
T ss_pred hHHHHHHHHHHhhC--CChHHHHHHHHHHHHHHhcccC--CCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHH
Confidence 45566667777777 6889999999999999875211 0000001122222211
Q ss_pred ---------------hhcCCcHHHHHHHHHHHHHHHHHhHH-hhHHhH-HHHHHHHHHHhhcCChhHHHHHHHhHHHhhH
Q 006253 227 ---------------ATLSPEVKIRQAAFECLVAISSTYYE-KLAPYI-QDIFNITAKAVREDEEPVALQAIEFWSSVCD 289 (653)
Q Consensus 227 ---------------~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~l-~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 289 (653)
-+.++.+..|+-..+...+++...+. .+...+ +.++.-++..+++.+.+.. .-+..+++++.
T Consensus 709 a~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~-vml~gfg~V~~ 787 (1172)
T KOG0213|consen 709 AAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDS-VMLLGFGTVVN 787 (1172)
T ss_pred HHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchh-hhhhhHHHHHH
Confidence 11223344444444444444443331 122222 2344444444443222111 11111222322
Q ss_pred HHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhc---C-CCch
Q 006253 290 EEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTV---G-DDIV 365 (653)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~---~-~~~~ 365 (653)
. ....+++++++|+..++..|... +..+|..|++.++.++... + ++.+
T Consensus 788 ~-------------------lg~r~kpylpqi~stiL~rLnnk---------sa~vRqqaadlis~la~Vlktc~ee~~m 839 (1172)
T KOG0213|consen 788 A-------------------LGGRVKPYLPQICSTILWRLNNK---------SAKVRQQAADLISSLAKVLKTCGEEKLM 839 (1172)
T ss_pred H-------------------HhhccccchHHHHHHHHHHhcCC---------ChhHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 1 11235777888888888777632 2468999999999888755 3 3567
Q ss_pred hchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCC
Q 006253 366 PLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGST 445 (653)
Q Consensus 366 ~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~ 445 (653)
.++--.+.+.+....+.+--..+.++.+|....+...+.+=+..++|.+...| ++.|..|...+...+|.++..-++
T Consensus 840 ~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPIL-knrheKVqen~IdLvg~IadrgpE-- 916 (1172)
T KOG0213|consen 840 GHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPIL-KNRHEKVQENCIDLVGTIADRGPE-- 916 (1172)
T ss_pred HHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhh-hhhHHHHHHHHHHHHHHHHhcCcc--
Confidence 77777788888877777777778888888776544555555778889888889 999999999999999999987652
Q ss_pred CCccccCccchHHHHHH---HHHhccc-hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccchh
Q 006253 446 LETPIINQGNCQQIISV---LLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGES 521 (653)
Q Consensus 446 ~~~~~~~~~~~~~il~~---l~~~l~d-~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~ 521 (653)
... ...+|.+ |++.|.. ++.+|.+|..+++.+.+..+++ +++..|++-+...+ .
T Consensus 917 ----~v~---aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPq------------dVLatLlnnLkvqe---R 974 (1172)
T KOG0213|consen 917 ----YVS---AREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQ------------DVLATLLNNLKVQE---R 974 (1172)
T ss_pred ----cCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHH------------HHHHHHHhcchHHH---H
Confidence 112 2344444 4445554 6889999999999999886642 66777777776543 4
Q ss_pred chHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHhHHHHHHHHhCCCcchhhH
Q 006253 522 RLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYV 601 (653)
Q Consensus 522 ~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~ 601 (653)
..|....-+++.+++.+| || .++|.+++-... ++ ..+++.++..++.+...+|..
T Consensus 975 q~RvcTtvaIaIVaE~c~----pF--tVLPalmneYrt--------Pe-----~nVQnGVLkalsf~Feyigem------ 1029 (1172)
T KOG0213|consen 975 QNRVCTTVAIAIVAETCG----PF--TVLPALMNEYRT--------PE-----ANVQNGVLKALSFMFEYIGEM------ 1029 (1172)
T ss_pred HhchhhhhhhhhhhhhcC----ch--hhhHHHHhhccC--------ch-----hHHHHhHHHHHHHHHHHHHHH------
Confidence 555555566677777666 56 567777665442 22 246777888899999999887
Q ss_pred hhHhHHHHHHHHHHHHhccCcchhhhHHHHHHHHHH
Q 006253 602 FMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAY 637 (653)
Q Consensus 602 ~~~~~~~i~~~l~~~l~~~~~~~~e~~~~~~~~l~~ 637 (653)
-..|+-.+.+.+--.|-+.+..-|..++.++..++-
T Consensus 1030 skdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~L 1065 (1172)
T KOG0213|consen 1030 SKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLAL 1065 (1172)
T ss_pred hhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhc
Confidence 667888889988888888776667778777777643
No 27
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.71 E-value=3.1e-13 Score=144.78 Aligned_cols=509 Identities=15% Similarity=0.154 Sum_probs=335.1
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHh--hCcchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhh
Q 006253 4 EVTQILLNAQSVDGTVRKQAEESLKQYQE--QNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQR 81 (653)
Q Consensus 4 ~l~~ll~~~~s~d~~~r~~A~~~L~~~~~--~~~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~ 81 (653)
++..+++... .+...++.+-..|-.+.. .+...+....++.+. +.+...|+++-.++..+...
T Consensus 8 el~~~~~~~~-~~~~~~~~~l~kli~~~~~G~~~~~~~~~vi~l~~--s~~~~~Krl~yl~l~~~~~~------------ 72 (526)
T PF01602_consen 8 ELAKILNSFK-IDISKKKEALKKLIYLMMLGYDISFLFMEVIKLIS--SKDLELKRLGYLYLSLYLHE------------ 72 (526)
T ss_dssp HHHHHHHCSS-THHHHHHHHHHHHHHHHHTT---GSTHHHHHCTCS--SSSHHHHHHHHHHHHHHTTT------------
T ss_pred HHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhc------------
Confidence 4555555555 467778888777764433 344555555555555 45889999999988887753
Q ss_pred ccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhh
Q 006253 82 WLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEE 161 (653)
Q Consensus 82 ~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~ 161 (653)
+++..--+.+.+.+-+.++++.+|..|..+++.+...+ ..+.+++.+.+.+.++++.+|..|+.++..+...
T Consensus 73 ----~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~----~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~ 144 (526)
T PF01602_consen 73 ----DPELLILIINSLQKDLNSPNPYIRGLALRTLSNIRTPE----MAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRK 144 (526)
T ss_dssp ----SHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SHH----HHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH
T ss_pred ----chhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcccc----hhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhcc
Confidence 34445567788889999999999999999999988543 5688999999999999999999999999999988
Q ss_pred hcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHH
Q 006253 162 VSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFE 241 (653)
Q Consensus 162 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~ 241 (653)
. |+.+ ... +++.+.+.+. |+++.|+.+|+.++..+ ..-+.... .....+.+.+...+...++-....+++
T Consensus 145 ~-p~~~-~~~---~~~~l~~lL~--d~~~~V~~~a~~~l~~i-~~~~~~~~--~~~~~~~~~L~~~l~~~~~~~q~~il~ 214 (526)
T PF01602_consen 145 D-PDLV-EDE---LIPKLKQLLS--DKDPSVVSAALSLLSEI-KCNDDSYK--SLIPKLIRILCQLLSDPDPWLQIKILR 214 (526)
T ss_dssp C-HCCH-HGG---HHHHHHHHTT--HSSHHHHHHHHHHHHHH-HCTHHHHT--THHHHHHHHHHHHHTCCSHHHHHHHHH
T ss_pred C-HHHH-HHH---HHHHHhhhcc--CCcchhHHHHHHHHHHH-ccCcchhh--hhHHHHHHHhhhcccccchHHHHHHHH
Confidence 6 6655 221 6777888887 88899999999999887 22122111 122455666666666778878888888
Q ss_pred HHHHHHHHhHHhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhh
Q 006253 242 CLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVL 321 (653)
Q Consensus 242 ~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 321 (653)
++..++...+..... ..+++.+...+.+.++.+...++.++..+.... . .+..+
T Consensus 215 ~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~--------------------~----~~~~~ 268 (526)
T PF01602_consen 215 LLRRYAPMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSP--------------------E----LLQKA 268 (526)
T ss_dssp HHTTSTSSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSH--------------------H----HHHHH
T ss_pred HHHhcccCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcch--------------------H----HHHhh
Confidence 888766544433211 456666666666777778877777766554321 1 34455
Q ss_pred HHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCC
Q 006253 322 VPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPE 401 (653)
Q Consensus 322 ~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~ 401 (653)
++.+...+.. .+..+|..+.++|..++...+..+. .....+.....+++..+|..++..+..++.. .
T Consensus 269 ~~~L~~lL~s---------~~~nvr~~~L~~L~~l~~~~~~~v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~---~ 335 (526)
T PF01602_consen 269 INPLIKLLSS---------SDPNVRYIALDSLSQLAQSNPPAVF-NQSLILFFLLYDDDPSIRKKALDLLYKLANE---S 335 (526)
T ss_dssp HHHHHHHHTS---------SSHHHHHHHHHHHHHHCCHCHHHHG-THHHHHHHHHCSSSHHHHHHHHHHHHHH--H---H
T ss_pred HHHHHHHhhc---------ccchhehhHHHHHHHhhcccchhhh-hhhhhhheecCCCChhHHHHHHHHHhhcccc---c
Confidence 6666666652 1246888888888888776532222 1111122233377788999999999988863 2
Q ss_pred cchHHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc-hhhHHHHHHH
Q 006253 402 KLVPLVNIALNFMLTALMQDP-NNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACG 479 (653)
Q Consensus 402 ~~~~~l~~l~~~ll~~l~~d~-~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~ 479 (653)
. ...+++.+...+ .+. ++.+|..++..++.++..+.. .....+..+++.+.. +..+...+..
T Consensus 336 n----~~~Il~eL~~~l-~~~~d~~~~~~~i~~I~~la~~~~~-----------~~~~~v~~l~~ll~~~~~~~~~~~~~ 399 (526)
T PF01602_consen 336 N----VKEILDELLKYL-SELSDPDFRRELIKAIGDLAEKFPP-----------DAEWYVDTLLKLLEISGDYVSNEIIN 399 (526)
T ss_dssp H----HHHHHHHHHHHH-HHC--HHHHHHHHHHHHHHHHHHGS-----------SHHHHHHHHHHHHHCTGGGCHCHHHH
T ss_pred c----hhhHHHHHHHHH-HhccchhhhhhHHHHHHHHHhccCc-----------hHHHHHHHHHHhhhhccccccchHHH
Confidence 2 344556565555 443 667999999999999998752 344555666666653 4566777777
Q ss_pred HHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Q 006253 480 ALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQ 559 (653)
Q Consensus 480 al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~ 559 (653)
.+..++.... .. -..++..+...+.+.. +..++..++.++|......++ .. ....++..+.+.+..
T Consensus 400 ~i~~ll~~~~-------~~---~~~~l~~L~~~l~~~~--~~~~~~~~~wilGEy~~~~~~-~~-~~~~~~~~l~~~~~~ 465 (526)
T PF01602_consen 400 VIRDLLSNNP-------EL---REKILKKLIELLEDIS--SPEALAAAIWILGEYGELIEN-TE-SAPDILRSLIENFIE 465 (526)
T ss_dssp HHHHHHHHST-------TT---HHHHHHHHHHHHTSSS--SHHHHHHHHHHHHHHCHHHTT-TT-HHHHHHHHHHHHHTT
T ss_pred HHHHHhhcCh-------hh---hHHHHHHHHHHHHHhh--HHHHHHHHHhhhcccCCcccc-cc-cHHHHHHHHHHhhcc
Confidence 7888876532 12 3456777777776644 356777888888888777664 01 233333333332221
Q ss_pred HHHhhcCChhHHHhHHHHHHHHHhHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHh--ccCcchhhhHHHHHHHH
Q 006253 560 TLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFA--IRSATAHEEAMLAIGAL 635 (653)
Q Consensus 560 ~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~--~~~~~~~e~~~~~~~~l 635 (653)
++ ..+|..++.++..+....+..+ ..+.+++.+.+... +.+.++|+.|...+.-+
T Consensus 466 ---------~~----~~vk~~ilt~~~Kl~~~~~~~~--------~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 466 ---------ES----PEVKLQILTALAKLFKRNPENE--------VQNEILQFLLSLATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp ---------SH----HHHHHHHHHHHHHHHHHSCSTT--------HHHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred ---------cc----HHHHHHHHHHHHHHHhhCCchh--------hHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 12 2467778888888888876532 23467777777777 66789999998766544
No 28
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.71 E-value=4.8e-13 Score=152.83 Aligned_cols=552 Identities=14% Similarity=0.106 Sum_probs=336.9
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHhhC--------cchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHh
Q 006253 7 QILLNAQSVDGTVRKQAEESLKQYQEQN--------LPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFEL 78 (653)
Q Consensus 7 ~ll~~~~s~d~~~r~~A~~~L~~~~~~~--------~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~ 78 (653)
.++.-+.++++..+..|...|..+.... -.+.++.|++++.+ +.++.+|..|+..|++........++..
T Consensus 193 ~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~s-g~~~~VRE~AA~AL~nLAs~s~e~r~~I- 270 (2102)
T PLN03200 193 ILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQ-GNEVSVRAEAAGALEALSSQSKEAKQAI- 270 (2102)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcc-CCChHHHHHHHHHHHHHhcCCHHHHHHH-
Confidence 3445556678888888887665443221 25678889999876 4567999999999999776432211100
Q ss_pred hhhccCCChHHHHHHHHHHHHhcCCCC---------hHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCC-ChhHH
Q 006253 79 VQRWLSLDSSVKAQIKSFILKTLSSPA---------HDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQL-PPHTK 148 (653)
Q Consensus 79 ~~~~~~l~~~~~~~i~~~ll~~l~~~~---------~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~-~~~~~ 148 (653)
+ .....+.|++.+.+++ ..++.++..+++.|+... +.+++.|.+.+.+. +....
T Consensus 271 ------v----~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~------~~ll~~L~~ll~s~rd~~~~ 334 (2102)
T PLN03200 271 ------A----DAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM------SALILYLGELSESPRSPAPI 334 (2102)
T ss_pred ------H----HCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc------hhhHHHHHHhhcccchHHHH
Confidence 0 0122345666665433 346788888888888532 44555555555443 22211
Q ss_pred HHHH--------------------------HHHHHHHhhhcccccchhhHh-------------------HHHHHHHhcc
Q 006253 149 QATL--------------------------ETLGYICEEVSSDAVEQDHVN-------------------KILTAVVQGM 183 (653)
Q Consensus 149 ~~~l--------------------------~~l~~l~~~~~~~~~~~~~~~-------------------~l~~~l~~~l 183 (653)
-.++ ..|..+++.-++... +..+. ...+.++..+
T Consensus 335 ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~v-qe~V~eALasl~gN~~l~~~L~~~daik~LV~LL 413 (2102)
T PLN03200 335 ADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLV-QERIIEALASLYGNAYLSRKLNHAEAKKVLVGLI 413 (2102)
T ss_pred HHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchh-HHHHHHHHHHhcCChHHHHHHHhccchhhhhhhh
Confidence 1222 223333332211110 01001 1122233333
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhHH-HHH
Q 006253 184 NASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQ-DIF 262 (653)
Q Consensus 184 ~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~ 262 (653)
. ..+.+++..++.++..+...-.+.... ......++.|..++.+++...+..++..+..++....+....... ..+
T Consensus 414 ~--~~~~evQ~~Av~aL~~L~~~~~e~~~a-Ii~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaI 490 (2102)
T PLN03200 414 T--MATADVQEELIRALSSLCCGKGGLWEA-LGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGI 490 (2102)
T ss_pred c--cCCHHHHHHHHHHHHHHhCCCHHHHHH-HHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCH
Confidence 3 345677777777777655321111000 001225778888888888999999999999887654433223333 678
Q ss_pred HHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCcc
Q 006253 263 NITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGA 342 (653)
Q Consensus 263 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~ 342 (653)
|.+.+.+.+.+.+++..|...+.+++....+ +...+.. ...+|.+++.|.. .+
T Consensus 491 P~LV~LL~s~~~~iqeeAawAL~NLa~~~~q----------------ir~iV~~--aGAIppLV~LL~s---------gd 543 (2102)
T PLN03200 491 PPLVQLLETGSQKAKEDSATVLWNLCCHSED----------------IRACVES--AGAVPALLWLLKN---------GG 543 (2102)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhCCcHH----------------HHHHHHH--CCCHHHHHHHHhC---------CC
Confidence 8888999999999999999999988853211 1111210 1456666666652 12
Q ss_pred ccHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHH---HHHHHHHHHHHhc
Q 006253 343 WNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPL---VNIALNFMLTALM 419 (653)
Q Consensus 343 ~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~---l~~l~~~ll~~l~ 419 (653)
+..+..|..+|..+........++.++ ..+.+++...+..++.+++.+......+..... -...++.+...+
T Consensus 544 ~~~q~~Aa~AL~nLi~~~d~~~I~~Lv----~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL- 618 (2102)
T PLN03200 544 PKGQEIAAKTLTKLVRTADAATISQLT----ALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLL- 618 (2102)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHH----HHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHH-
Confidence 467888999999987764444444443 456667777788888899887664322211111 135688999999
Q ss_pred CCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc-hhhHHHHHHHHHHHHHhcccCCCCCCCCC
Q 006253 420 QDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPL 498 (653)
Q Consensus 420 ~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~~~~~~~~~~~~l 498 (653)
++++..++..|+|+|.+++..-.+. ...-.....+|.++..+.+ +.+++..|+++|.++..... ....
T Consensus 619 ~sgs~~ikk~Aa~iLsnL~a~~~d~------~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~-----~~q~ 687 (2102)
T PLN03200 619 SSSKEETQEKAASVLADIFSSRQDL------CESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIK-----ENRK 687 (2102)
T ss_pred cCCCHHHHHHHHHHHHHHhcCChHH------HHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCC-----HHHH
Confidence 9999999999999999998744310 1122334567777888775 67899999999999986421 1212
Q ss_pred chhH-HHHHHHHHHhccccccchhchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhHHHH
Q 006253 499 TPFF-QEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEI 577 (653)
Q Consensus 499 ~~~l-~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l 577 (653)
..+. ...++.|++++...+ ..++..++.+|+.+++.......=.-...++.+++.++. ..+ +.
T Consensus 688 ~~~v~~GaV~pL~~LL~~~d---~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~--------G~~-----~~ 751 (2102)
T PLN03200 688 VSYAAEDAIKPLIKLAKSSS---IEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLRE--------GTL-----EG 751 (2102)
T ss_pred HHHHHcCCHHHHHHHHhCCC---hHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHh--------CCh-----HH
Confidence 2223 347888999997764 578889999999998865422111123456778887775 222 24
Q ss_pred HHHHHhHHHHHHHHhCCCcchhhHhhHhHH--HHHHHHHHHHhccCcchhh--hHHHHHHHHHHH-hccCC
Q 006253 578 QGLLCGCLQVIIQKLGSSEQTKYVFMQYAD--QMMGLFLRVFAIRSATAHE--EAMLAIGALAYA-TGLWR 643 (653)
Q Consensus 578 ~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~--~i~~~l~~~l~~~~~~~~e--~~~~~~~~l~~~-~~~~f 643 (653)
|..+..++..+++.....+ ++..|+. ..+..++..|+..+.+... +++..++.++.. .|..|
T Consensus 752 k~~Aa~AL~~L~~~~~~~~----~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~ 818 (2102)
T PLN03200 752 KRNAARALAQLLKHFPVDD----VLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANF 818 (2102)
T ss_pred HHHHHHHHHHHHhCCChhH----HHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCC
Confidence 5567788888887755331 1434433 4677788889887665544 488888888883 33444
No 29
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=1.3e-13 Score=133.87 Aligned_cols=394 Identities=14% Similarity=0.162 Sum_probs=284.8
Q ss_pred HHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHH-HhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHh
Q 006253 179 VVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVV-CEATLSPEVKIRQAAFECLVAISSTYYEKLAPY 257 (653)
Q Consensus 179 l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l-~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 257 (653)
+..+++ |...+=|++|..-+..++.-+-.+-. ......+++.+ ..++..++..-|+..+..+...+-..+..-.+|
T Consensus 5 i~r~lt--dKlYekRKaaalelEk~Vk~l~~~~~-~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y 81 (675)
T KOG0212|consen 5 IARGLT--DKLYEKRKAAALELEKLVKDLVNNND-YDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGY 81 (675)
T ss_pred hhhhhh--hHHHHHHHHHHHHHHHHHHHHHccCc-HHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHH
Confidence 345666 77788888888777776652211111 11124566643 445555666667777777776655555555669
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCcc
Q 006253 258 IQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQD 337 (653)
Q Consensus 258 l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~ 337 (653)
++.+++.++.++.+.+..+|..|++.+..++... +.-+..+++.+..++.+...+.|
T Consensus 82 ~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~-------------------k~~v~~~Fn~iFdvL~klsaDsd---- 138 (675)
T KOG0212|consen 82 LEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVA-------------------KGEVLVYFNEIFDVLCKLSADSD---- 138 (675)
T ss_pred HHHhhHHHHHhccCccceeeeHhHHHHHHHHHHh-------------------ccCcccchHHHHHHHHHHhcCCc----
Confidence 9999999999999999999999999999998643 12234455666666665443211
Q ss_pred CCCccccHhhhHHHHHHHHHhhcC--C---CchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHH
Q 006253 338 QDEGAWNIAMAGGTCLGLVARTVG--D---DIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALN 412 (653)
Q Consensus 338 ~d~~~~~~r~~a~~~L~~l~~~~~--~---~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~ 412 (653)
.++| .+++.++++.+... + --++.++|.+.+.+...++..|...+.++..+-... .-.+-.|++.+++
T Consensus 139 -----~~V~-~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P-~~~m~~yl~~~ld 211 (675)
T KOG0212|consen 139 -----QNVR-GGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVP-DLEMISYLPSLLD 211 (675)
T ss_pred -----cccc-cHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCC-cHHHHhcchHHHH
Confidence 2344 57788888887552 2 237899999999999889999999998888777655 4667889999999
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc-hhhHHHHHHHHHHHHHhcccCC
Q 006253 413 FMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDA 491 (653)
Q Consensus 413 ~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~~~~~~ 491 (653)
.++..| .|+++.||..+-.+++++.....+. |. .--...+++.++..+++ ++.++..|...+..|+.-.
T Consensus 212 GLf~~L-sD~s~eVr~~~~t~l~~fL~eI~s~----P~--s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~--- 281 (675)
T KOG0212|consen 212 GLFNML-SDSSDEVRTLTDTLLSEFLAEIRSS----PS--SMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIP--- 281 (675)
T ss_pred HHHHHh-cCCcHHHHHHHHHHHHHHHHHHhcC----cc--ccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCC---
Confidence 999999 9999999999999999988877642 21 11467788999999986 6899999999999999864
Q ss_pred CCCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhcccccH---HHHHHHHHHHHHHHHHHHHhhcCCh
Q 006253 492 ISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETA---PMVMQLVPLIMMELHQTLEAQKLSS 568 (653)
Q Consensus 492 ~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~---~~~~~l~~~l~~~l~~~~~~~~~~~ 568 (653)
+..+.+|+..++..++.++.+++. ...+..+...=+.+...++.... --+..++..+.+.+..
T Consensus 282 ---g~~~l~~~s~il~~iLpc~s~~e~--~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~--------- 347 (675)
T KOG0212|consen 282 ---GRDLLLYLSGILTAILPCLSDTEE--MSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSD--------- 347 (675)
T ss_pred ---CcchhhhhhhhhhhcccCCCCCcc--ccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhc---------
Confidence 467899999999999999987763 34565555555555555443221 1234555555444443
Q ss_pred hHHHhHHHHHHHHHhHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHh
Q 006253 569 DEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYAT 639 (653)
Q Consensus 569 ~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~e~~~~~~~~l~~~~ 639 (653)
+. .+.|-.++++|..+-+..+.+ +.-+..+++..+++.|++.++++...++..++.++..-
T Consensus 348 -~~---~~tri~~L~Wi~~l~~~~p~q------l~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~ 408 (675)
T KOG0212|consen 348 -DR---EETRIAVLNWIILLYHKAPGQ------LLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSS 408 (675)
T ss_pred -ch---HHHHHHHHHHHHHHHhhCcch------hhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCc
Confidence 21 234556899999999999999 88999999999999999988888888777777776543
No 30
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.66 E-value=3.4e-13 Score=145.18 Aligned_cols=456 Identities=16% Similarity=0.223 Sum_probs=296.2
Q ss_pred CChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCC----CCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHh
Q 006253 85 LDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPH----KQWPELIGALLSNIHQLPPHTKQATLETLGYICE 160 (653)
Q Consensus 85 l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~----~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~ 160 (653)
.+......+.+.+...+.++++..|++.|.=+-.+.++.... -..+++...+...+++.|+-.++.|-+.++-+-+
T Consensus 811 ~n~~~~~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYe 890 (1702)
T KOG0915|consen 811 VNDTRETIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYE 890 (1702)
T ss_pred cCCccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEe
Confidence 334445677788888889999999999999999999987532 2457888888888888888888888777765433
Q ss_pred hhcccccchhhHhHHHHHHHhcccCC---CCCHHHH-HH---------HHHHHHHHHHhhhhhcCChhHHHHHHHHHHhh
Q 006253 161 EVSSDAVEQDHVNKILTAVVQGMNAS---ESNNDVR-LA---------ATRALYNALGFAQANFSNDMERDYIMRVVCEA 227 (653)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~l~~~l~~~---~~~~~vr-~~---------a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~ 227 (653)
.- ...+-+.-++.++..+..+=... +.+.++- .. -+.+...++...++ ... +.++--+.++
T Consensus 891 lg-d~~~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASd-l~q----PdLVYKFM~L 964 (1702)
T KOG0915|consen 891 LG-DSSLKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASD-LGQ----PDLVYKFMQL 964 (1702)
T ss_pred cC-CchhHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhh-cCC----hHHHHHHHHH
Confidence 22 22221222334444333221100 0011110 00 11111111111111 111 1233333344
Q ss_pred hcC-CcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCC
Q 006253 228 TLS-PEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDS 306 (653)
Q Consensus 228 ~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (653)
.++ .-|.-|+.+.-.++.++...++.+.||+++++|-+++.--|++..|+..=...|.++..+.
T Consensus 965 Anh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~--------------- 1029 (1702)
T KOG0915|consen 965 ANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDS--------------- 1029 (1702)
T ss_pred hhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccCh---------------
Confidence 443 4677788899999999999999999999999999998877888888776677788877531
Q ss_pred CCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHH
Q 006253 307 DIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREA 386 (653)
Q Consensus 307 ~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~a 386 (653)
...+..++..|+.- +..++.+..|++|+|
T Consensus 1030 ----k~~vd~y~neIl~e-----------------------------------------------LL~~lt~kewRVRea 1058 (1702)
T KOG0915|consen 1030 ----KKVVDEYLNEILDE-----------------------------------------------LLVNLTSKEWRVREA 1058 (1702)
T ss_pred ----HHHHHHHHHHHHHH-----------------------------------------------HHHhccchhHHHHHH
Confidence 12333333322222 223466788999999
Q ss_pred HHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHH---HHHHHHHhhhccCCCCccccCccchHHHHHHH
Q 006253 387 ATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTA---WTLGRMFEFLHGSTLETPIINQGNCQQIISVL 463 (653)
Q Consensus 387 al~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~---~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l 463 (653)
++.|+..+..|...+.+...++++...+++.+ +|-+..||.+|- .++++++-...+... +...++.+..++|.|
T Consensus 1059 sclAL~dLl~g~~~~~~~e~lpelw~~~fRvm-DDIKEsVR~aa~~~~~~lsKl~vr~~d~~~--~~~~~~~l~~iLPfL 1135 (1702)
T KOG0915|consen 1059 SCLALADLLQGRPFDQVKEKLPELWEAAFRVM-DDIKESVREAADKAARALSKLCVRICDVTN--GAKGKEALDIILPFL 1135 (1702)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcccCC--cccHHHHHHHHHHHH
Confidence 99999999999765667778889999999998 999999999875 445555554443321 345678899999998
Q ss_pred HHhcc-c-hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccchhchH----------HHHHHHH
Q 006253 464 LQSMK-D-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLR----------TAAYETL 531 (653)
Q Consensus 464 ~~~l~-d-~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~----------~~~~~~l 531 (653)
+..-- + -+.||.-+...+..+++.. ++.+.||++.+++.|++....-+ +..+- ..+++.+
T Consensus 1136 l~~gims~v~evr~~si~tl~dl~Kss------g~~lkP~~~~LIp~ll~~~s~lE--~~vLnYls~r~~~~e~ealDt~ 1207 (1702)
T KOG0915|consen 1136 LDEGIMSKVNEVRRFSIGTLMDLAKSS------GKELKPHFPKLIPLLLNAYSELE--PQVLNYLSLRLINIETEALDTL 1207 (1702)
T ss_pred hccCcccchHHHHHHHHHHHHHHHHhc------hhhhcchhhHHHHHHHHHccccc--hHHHHHHHHhhhhhHHHHHHHH
Confidence 87522 3 4788888888888888753 56899999999999998876544 11111 1122222
Q ss_pred HH-HHHhcc-----cccHH-----HHHHHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHhHHHHHHHHhCCCcchhh
Q 006253 532 NE-VVRCST-----DETAP-----MVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKY 600 (653)
Q Consensus 532 ~~-l~~~~~-----~~~~~-----~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~ 600 (653)
-. .++..+ +.+.+ .+.+++|.+.+.++..+ +-.++ ..+-.+|..++..+|.+
T Consensus 1208 R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sV-----gl~Tk-------vg~A~fI~~L~~r~~~e----- 1270 (1702)
T KOG0915|consen 1208 RASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSV-----GLGTK-------VGCASFISLLVQRLGSE----- 1270 (1702)
T ss_pred HHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccC-----CCCcc-------hhHHHHHHHHHHHhccc-----
Confidence 11 111111 11222 34455555555544422 22222 23566788888999999
Q ss_pred HhhHhHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHhcc
Q 006253 601 VFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGL 641 (653)
Q Consensus 601 ~~~~~~~~i~~~l~~~l~~~~~~~~e~~~~~~~~l~~~~~~ 641 (653)
+.||...++..++..+++.+..+|.....++|-++..-.+
T Consensus 1271 -mtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~ 1310 (1702)
T KOG0915|consen 1271 -MTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSP 1310 (1702)
T ss_pred -cCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCCh
Confidence 9999999999999999999989999888899988876554
No 31
>PTZ00429 beta-adaptin; Provisional
Probab=99.63 E-value=1.2e-10 Score=124.32 Aligned_cols=507 Identities=9% Similarity=0.043 Sum_probs=308.5
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHh--hCcchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhc
Q 006253 5 VTQILLNAQSVDGTVRKQAEESLKQYQE--QNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRW 82 (653)
Q Consensus 5 l~~ll~~~~s~d~~~r~~A~~~L~~~~~--~~~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~ 82 (653)
+.++-..+.+.|...|+.|-..+-.... .+-..+....+..+.+ .+...|+++-.++.++.+.
T Consensus 34 ~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~DvS~LF~dVvk~~~S--~d~elKKLvYLYL~~ya~~------------- 98 (746)
T PTZ00429 34 GAELQNDLNGTDSYRKKAAVKRIIANMTMGRDVSYLFVDVVKLAPS--TDLELKKLVYLYVLSTARL------------- 98 (746)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHhCC--CCHHHHHHHHHHHHHHccc-------------
Confidence 4455555667777777888777764433 3455666666676664 4899999999999887652
Q ss_pred cCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhh
Q 006253 83 LSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEV 162 (653)
Q Consensus 83 ~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~ 162 (653)
.++..--..+.+.+-+.++++.+|..+...++.|-. | ...+.+++.+..++.+.++.+|..|..|+..+....
T Consensus 99 ---~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~---~-~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~ 171 (746)
T PTZ00429 99 ---QPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRV---S-SVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDD 171 (746)
T ss_pred ---ChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc---H-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC
Confidence 244445567888899999999999888887777643 3 255677888899999999999999999999998766
Q ss_pred cccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHH
Q 006253 163 SSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFEC 242 (653)
Q Consensus 163 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~ 242 (653)
|+.+. ...+++.+...+. |.++.|...|+.+|..+....+..+. .....+..++..+.+-++=....++++
T Consensus 172 -pelv~---~~~~~~~L~~LL~--D~dp~Vv~nAl~aL~eI~~~~~~~l~---l~~~~~~~Ll~~L~e~~EW~Qi~IL~l 242 (746)
T PTZ00429 172 -MQLFY---QQDFKKDLVELLN--DNNPVVASNAAAIVCEVNDYGSEKIE---SSNEWVNRLVYHLPECNEWGQLYILEL 242 (746)
T ss_pred -ccccc---ccchHHHHHHHhc--CCCccHHHHHHHHHHHHHHhCchhhH---HHHHHHHHHHHHhhcCChHHHHHHHHH
Confidence 65441 1224445555566 89999999999999987653322111 112233334444433222223345555
Q ss_pred HHHHHHHhHHhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhH
Q 006253 243 LVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLV 322 (653)
Q Consensus 243 l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 322 (653)
|.. ..|.. ......++..+...+++.++.|...|+..+..+.... .....+..+.++-
T Consensus 243 L~~---y~P~~-~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~------------------~~~~~~~~~~rl~ 300 (746)
T PTZ00429 243 LAA---QRPSD-KESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRC------------------SQELIERCTVRVN 300 (746)
T ss_pred HHh---cCCCC-cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcC------------------CHHHHHHHHHHHH
Confidence 533 22211 1223467777777788888999888888777665310 0123333333443
Q ss_pred HHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCc
Q 006253 323 PLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEK 402 (653)
Q Consensus 323 ~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~ 402 (653)
+.++..+. . ...+|..+...+..+....+.-+.+. +..+-...+|+. .+|...+-.+..++.. ..
T Consensus 301 ~pLv~L~s---s-------~~eiqyvaLr~I~~i~~~~P~lf~~~-~~~Ff~~~~Dp~-yIK~~KLeIL~~Lane---~N 365 (746)
T PTZ00429 301 TALLTLSR---R-------DAETQYIVCKNIHALLVIFPNLLRTN-LDSFYVRYSDPP-FVKLEKLRLLLKLVTP---SV 365 (746)
T ss_pred HHHHHhhC---C-------CccHHHHHHHHHHHHHHHCHHHHHHH-HHhhhcccCCcH-HHHHHHHHHHHHHcCc---cc
Confidence 43433221 1 13567788888887777665444443 222223345555 4788888888888864 23
Q ss_pred chHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccchhhHHHHHHHHHH
Q 006253 403 LVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALY 482 (653)
Q Consensus 403 ~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~al~ 482 (653)
+..++..+..+. .+.+..++..+..++|+++..++ .....++..|++.+.+...+...+...+.
T Consensus 366 ----v~~IL~EL~eYa-~d~D~ef~r~aIrAIg~lA~k~~-----------~~a~~cV~~Ll~ll~~~~~~v~e~i~vik 429 (746)
T PTZ00429 366 ----APEILKELAEYA-SGVDMVFVVEVVRAIASLAIKVD-----------SVAPDCANLLLQIVDRRPELLPQVVTAAK 429 (746)
T ss_pred ----HHHHHHHHHHHh-hcCCHHHHHHHHHHHHHHHHhCh-----------HHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 345566666777 78888999999999999997664 35667777777777653334446778888
Q ss_pred HHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHH
Q 006253 483 FLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLE 562 (653)
Q Consensus 483 ~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 562 (653)
.+++... .. + ++..|+..+......+...|...+..+|......++ ...++..++ +...
T Consensus 430 ~IlrkyP------~~---~---il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~-----a~~~L~~~i---~~f~- 488 (746)
T PTZ00429 430 DIVRKYP------EL---L---MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN-----GKDIIQRFI---DTIM- 488 (746)
T ss_pred HHHHHCc------cH---H---HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh-----HHHHHHHHH---hhhc-
Confidence 8877532 11 1 455555433211122456777778888887664432 111221121 1111
Q ss_pred hhcCChhHHHhHHHHHHHHHhHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHH-h-ccCcchhhhHHHHHHHH
Q 006253 563 AQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVF-A-IRSATAHEEAMLAIGAL 635 (653)
Q Consensus 563 ~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~l~~~l-~-~~~~~~~e~~~~~~~~l 635 (653)
.++. .+|..++.+...+....... . ...+..+++.+ + +++.++|+.|+.-|.-+
T Consensus 489 -----~E~~----~VqlqlLta~vKlfl~~p~~------~----~~~l~~vL~~~t~~~~d~DVRDRA~~Y~rLL 544 (746)
T PTZ00429 489 -----EHEQ----RVQLAILSAAVKMFLRDPQG------M----EPQLNRVLETVTTHSDDPDVRDRAFAYWRLL 544 (746)
T ss_pred -----cCCH----HHHHHHHHHHHHHHhcCcHH------H----HHHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 1222 35655666666555554433 3 33344444333 3 25668999988755433
No 32
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.60 E-value=1.4e-11 Score=131.96 Aligned_cols=443 Identities=16% Similarity=0.177 Sum_probs=273.4
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhhCcchHHHHHHHHHhc--CCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhc
Q 006253 5 VTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVN--DEKPVESRKLAGLILKNALDAKEQHRKFELVQRW 82 (653)
Q Consensus 5 l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~--~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~ 82 (653)
+.++++.+.+.|...++-+.-.+..+...+ ++.+.-.++.+.. .+.++.+|..|+..+.+..
T Consensus 44 ~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~-~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~--------------- 107 (526)
T PF01602_consen 44 FMEVIKLISSKDLELKRLGYLYLSLYLHED-PELLILIINSLQKDLNSPNPYIRGLALRTLSNIR--------------- 107 (526)
T ss_dssp HHHHHCTCSSSSHHHHHHHHHHHHHHTTTS-HHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc---------------
Confidence 456667777889999999999999887765 4433333333322 1457899999999988844
Q ss_pred cCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCch-HHHHHHHhhcCCChhHHHHHHHHHHHHHhh
Q 006253 83 LSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPE-LIGALLSNIHQLPPHTKQATLETLGYICEE 161 (653)
Q Consensus 83 ~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~-l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~ 161 (653)
+++..+.+.+.+.+.+.++++.||+.|+.++..+.+.+ | +..+. +++.+.+.+.+.++.++.+|+.++..+ +.
T Consensus 108 ---~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~-p-~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~ 181 (526)
T PF01602_consen 108 ---TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKD-P-DLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KC 181 (526)
T ss_dssp ---SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC-H-CCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HC
T ss_pred ---ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccC-H-HHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-cc
Confidence 35566778888999999999999999999999999986 5 24444 799999999999999999999999988 21
Q ss_pred hcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhh-------------------------------
Q 006253 162 VSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQAN------------------------------- 210 (653)
Q Consensus 162 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~------------------------------- 210 (653)
- ++.. ......++..+.+.+. ++++-++..+++++..+...-...
T Consensus 182 ~-~~~~-~~~~~~~~~~L~~~l~--~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~ 257 (526)
T PF01602_consen 182 N-DDSY-KSLIPKLIRILCQLLS--DPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIK 257 (526)
T ss_dssp T-HHHH-TTHHHHHHHHHHHHHT--CCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-cchh-hhhHHHHHHHhhhccc--ccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 1 2211 1223333333333333 455555555554444322110000
Q ss_pred -cCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhH
Q 006253 211 -FSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCD 289 (653)
Q Consensus 211 -~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 289 (653)
.........+.+.+..++.+++++++-.+++++..++...+..+. +.... +.....+++..+|..+++.+..+++
T Consensus 258 l~~~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~-~~~~~---~~~l~~~~d~~Ir~~~l~lL~~l~~ 333 (526)
T PF01602_consen 258 LSPSPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF-NQSLI---LFFLLYDDDPSIRKKALDLLYKLAN 333 (526)
T ss_dssp HSSSHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG-THHHH---HHHHHCSSSHHHHHHHHHHHHHH--
T ss_pred hhcchHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh-hhhhh---hheecCCCChhHHHHHHHHHhhccc
Confidence 000001123444555555556666666666666666655532222 11111 1112225566666666666666664
Q ss_pred HHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCCchhchH
Q 006253 290 EEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVM 369 (653)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~ 369 (653)
.. .+..+++.+.+.+....+ ..+|..+...+..++...+. .....+
T Consensus 334 ~~-------------------------n~~~Il~eL~~~l~~~~d--------~~~~~~~i~~I~~la~~~~~-~~~~~v 379 (526)
T PF01602_consen 334 ES-------------------------NVKEILDELLKYLSELSD--------PDFRRELIKAIGDLAEKFPP-DAEWYV 379 (526)
T ss_dssp HH-------------------------HHHHHHHHHHHHHHHC----------HHHHHHHHHHHHHHHHHHGS-SHHHHH
T ss_pred cc-------------------------chhhHHHHHHHHHHhccc--------hhhhhhHHHHHHHHHhccCc-hHHHHH
Confidence 31 223455556655532111 24788888889988887743 333445
Q ss_pred HHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCcc
Q 006253 370 PFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETP 449 (653)
Q Consensus 370 ~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 449 (653)
+.+.+.+...+......+...+..+.... +... ..++..+...+..-.++.++.+++|++|+++.....
T Consensus 380 ~~l~~ll~~~~~~~~~~~~~~i~~ll~~~-~~~~----~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~------ 448 (526)
T PF01602_consen 380 DTLLKLLEISGDYVSNEIINVIRDLLSNN-PELR----EKILKKLIELLEDISSPEALAAAIWILGEYGELIEN------ 448 (526)
T ss_dssp HHHHHHHHCTGGGCHCHHHHHHHHHHHHS-TTTH----HHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTT------
T ss_pred HHHHHhhhhccccccchHHHHHHHHhhcC-hhhh----HHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccc------
Confidence 55556666555566777777777776543 2322 233555555662337788999999999999998852
Q ss_pred ccCccchHHHHHHHHHhccc-hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccchhchHHHHH
Q 006253 450 IINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAY 528 (653)
Q Consensus 450 ~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~ 528 (653)
.. ....++..+...+.+ ++.|+.....++..+..... -....+.+++.+.+.....+. +..+|..|.
T Consensus 449 --~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~--------~~~~~~~i~~~~~~~~~~~s~-~~evr~Ra~ 516 (526)
T PF01602_consen 449 --TE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNP--------ENEVQNEILQFLLSLATEDSS-DPEVRDRAR 516 (526)
T ss_dssp --TT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSC--------STTHHHHHHHHHHCHHHHS-S-SHHHHHHHH
T ss_pred --cc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCC--------chhhHHHHHHHHHHHhccCCC-CHHHHHHHH
Confidence 12 677788888888775 67899999888888876532 112344777777777662111 367888888
Q ss_pred HHHHHH
Q 006253 529 ETLNEV 534 (653)
Q Consensus 529 ~~l~~l 534 (653)
+.+.-+
T Consensus 517 ~y~~ll 522 (526)
T PF01602_consen 517 EYLRLL 522 (526)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777654
No 33
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=3.2e-11 Score=117.70 Aligned_cols=394 Identities=15% Similarity=0.168 Sum_probs=280.8
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCC---chHHHHHHHh-hcCCChhHHHHHHHHHHHHHhhhcccccchhh
Q 006253 96 FILKTLSSPAHDARSTASQVVAKVAGIELPHKQW---PELIGALLSN-IHQLPPHTKQATLETLGYICEEVSSDAVEQDH 171 (653)
Q Consensus 96 ~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~---~~l~~~l~~~-l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~ 171 (653)
.+.+++++.-.+-|+++|.-+-.+.+.....+.. ..+++.+... ..+++...|.+++..+....-..+++.. .+
T Consensus 4 ~i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~--~Y 81 (675)
T KOG0212|consen 4 SIARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDA--GY 81 (675)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccH--HH
Confidence 3456677777778999999999999865543222 3444433332 3456666777999888877666644433 48
Q ss_pred HhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhH
Q 006253 172 VNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYY 251 (653)
Q Consensus 172 ~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~ 251 (653)
+..+++.+..+++ |++..+|..|++.++++....++.+. .+.+.++..++.+..+.+..++ .+.+.+-+++..-.
T Consensus 82 ~~~iv~Pv~~cf~--D~d~~vRyyACEsLYNiaKv~k~~v~--~~Fn~iFdvL~klsaDsd~~V~-~~aeLLdRLikdIV 156 (675)
T KOG0212|consen 82 LEKIVPPVLNCFS--DQDSQVRYYACESLYNIAKVAKGEVL--VYFNEIFDVLCKLSADSDQNVR-GGAELLDRLIKDIV 156 (675)
T ss_pred HHHhhHHHHHhcc--CccceeeeHhHHHHHHHHHHhccCcc--cchHHHHHHHHHHhcCCccccc-cHHHHHHHHHHHhc
Confidence 9999999999999 89999999999999999887765433 3457899999998888777766 44455555554322
Q ss_pred --HhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHh
Q 006253 252 --EKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETL 329 (653)
Q Consensus 252 --~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l 329 (653)
+.-.-.++.++|.+-..+-..++..|...++++..+ ... +..++ -.+++.+++.+++.+
T Consensus 157 te~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~L-ds~-----------------P~~~m-~~yl~~~ldGLf~~L 217 (675)
T KOG0212|consen 157 TESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVL-DSV-----------------PDLEM-ISYLPSLLDGLFNML 217 (675)
T ss_pred cccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH-hcC-----------------CcHHH-HhcchHHHHHHHHHh
Confidence 111235788999988888888888888777654444 322 12223 345677888898887
Q ss_pred hhccCCccCCCccccHhhhHHHHHHHHHhhc---CCC-chhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchH
Q 006253 330 LKQEEDQDQDEGAWNIAMAGGTCLGLVARTV---GDD-IVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVP 405 (653)
Q Consensus 330 ~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~---~~~-~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~ 405 (653)
.+ .+..+|..+..+++.+.... |.. -.+.+++.+...+.++++..+..|+.++..+..-. +..+-+
T Consensus 218 sD---------~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~-g~~~l~ 287 (675)
T KOG0212|consen 218 SD---------SSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIP-GRDLLL 287 (675)
T ss_pred cC---------CcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCC-Ccchhh
Confidence 62 22368888888887776654 222 24667777778888999999988899999988765 467778
Q ss_pred HHHHHHHHHHHHhcCCCch-HHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc-hhhHHHHHHHHHHH
Q 006253 406 LVNIALNFMLTALMQDPNN-HVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYF 483 (653)
Q Consensus 406 ~l~~l~~~ll~~l~~d~~~-~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~ 483 (653)
++..++..+++++ .|..+ .++..+...-+.+...+..+.. ...--+..+++.+...+.+ ....|..+...+..
T Consensus 288 ~~s~il~~iLpc~-s~~e~~~i~~~a~~~n~~l~~l~s~~~~----~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~ 362 (675)
T KOG0212|consen 288 YLSGILTAILPCL-SDTEEMSIKEYAQMVNGLLLKLVSSERL----KEEIDYGSIIEVLTKYLSDDREETRIAVLNWIIL 362 (675)
T ss_pred hhhhhhhhcccCC-CCCccccHHHHHHHHHHHHHHHHhhhhh----ccccchHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 9999999999999 66555 5787777666666665543221 1123456899999999886 46777888888888
Q ss_pred HHhcccCCCCCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhcc
Q 006253 484 LAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCST 539 (653)
Q Consensus 484 ~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~ 539 (653)
+-... +..+.-|.+++.+.|++.+.+.+ ..+-..+++.++.++....
T Consensus 363 l~~~~------p~ql~~h~~~if~tLL~tLsd~s---d~vvl~~L~lla~i~~s~~ 409 (675)
T KOG0212|consen 363 LYHKA------PGQLLVHNDSIFLTLLKTLSDRS---DEVVLLALSLLASICSSSN 409 (675)
T ss_pred HHhhC------cchhhhhccHHHHHHHHhhcCch---hHHHHHHHHHHHHHhcCcc
Confidence 87765 45688899999999999998876 3455577888887776554
No 34
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.59 E-value=6.1e-12 Score=123.55 Aligned_cols=471 Identities=14% Similarity=0.179 Sum_probs=287.0
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCC--CCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchh
Q 006253 93 IKSFILKTLSSPAHDARSTASQVVAKVAGIELPH--KQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQD 170 (653)
Q Consensus 93 i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~--~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~ 170 (653)
+..-+-+++.+....||-.+|.+++.+|+..+|- ..+.+++.-|.+..++........-+++.+.++...+|++. -.
T Consensus 359 l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa-~h 437 (975)
T COG5181 359 LLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLMSPEYA-CH 437 (975)
T ss_pred HHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHHHHhcCCchHHHHHHHhccccccCChHhh-hh
Confidence 4555666777888899999999999999988773 24566666666666655555556677788777777767665 34
Q ss_pred hHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhc----CCcHHHHHH---HH---
Q 006253 171 HVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATL----SPEVKIRQA---AF--- 240 (653)
Q Consensus 171 ~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~----~~~~~~~~~---~~--- 240 (653)
.....+..++..++ .++.+.++-.+.....+..... ......++++.+.++...- ..|....+. ..
T Consensus 438 ~tre~m~iv~ref~--spdeemkk~~l~v~~~C~~v~~--~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvil 513 (975)
T COG5181 438 DTREHMEIVFREFK--SPDEEMKKDLLVVERICDKVGT--DTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVIL 513 (975)
T ss_pred hHHHHHHHHHHHhC--CchhhcchhHHHHHHHHhccCC--CCHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHH
Confidence 45667777777777 4666666655555544432111 1111123444444432110 000000000 00
Q ss_pred -------HHHHHHHHHhHHhhHHhH---HHHHHHHHHHhhc--CChhHHHHHHHh-HHHhhHHHHhhhhhcCCCCCCCCC
Q 006253 241 -------ECLVAISSTYYEKLAPYI---QDIFNITAKAVRE--DEEPVALQAIEF-WSSVCDEEIDILEEYGGDFSGDSD 307 (653)
Q Consensus 241 -------~~l~~l~~~~~~~~~~~l---~~l~~~~~~~~~~--~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 307 (653)
....++...+.+.-+||- ...+.-++..+.- -++.....-++. +.++.+.. .+..-.
T Consensus 514 Ak~~g~~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~----------~t~~~i 583 (975)
T COG5181 514 AKMGGDPRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQD----------TTVGLI 583 (975)
T ss_pred HHHcCChHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhcc----------ccccEE
Confidence 011111111111111221 1223323333221 122111111111 11222210 000000
Q ss_pred Cchh--------hHHHhhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhc---C-CCchhchHHHHHhh
Q 006253 308 IPCF--------YFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTV---G-DDIVPLVMPFVEEN 375 (653)
Q Consensus 308 ~~~~--------~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~---~-~~~~~~l~~~l~~~ 375 (653)
++|+ ...+++++.|+..+++.+.... ..+|.-|++..+.++..+ | .+.+..+-..+.++
T Consensus 584 l~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~---------p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~ 654 (975)
T COG5181 584 LPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKP---------PDVRIRAADLMGSLAKVLKACGETKELAKLGNILYEN 654 (975)
T ss_pred EecccceeeehhhccCcchHHHHHHHHHHhcCCC---------ccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHh
Confidence 1111 2357777888888887776432 357888999888887654 4 35677777778888
Q ss_pred hcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccc
Q 006253 376 ITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGN 455 (653)
Q Consensus 376 l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 455 (653)
+....+++--..+.++.+|....+...+.|=+..++|.+...| .+.|..|.......+|.++...++ ..-
T Consensus 655 lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPIL-rnkh~Kv~~nti~lvg~I~~~~pe---------yi~ 724 (975)
T COG5181 655 LGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPIL-RNKHQKVVANTIALVGTICMNSPE---------YIG 724 (975)
T ss_pred cCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhh-hhhhHHHhhhHHHHHHHHHhcCcc---------cCC
Confidence 8877777777788888888765544555566778889888889 999999999999999999987652 122
Q ss_pred hHHHHHH---HHHhccc-hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHH
Q 006253 456 CQQIISV---LLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETL 531 (653)
Q Consensus 456 ~~~il~~---l~~~l~d-~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l 531 (653)
...+|.+ |+..|.+ |+.+|.+|..+++-+.+..++ .+++..|++-+...+ ...|....-++
T Consensus 725 ~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGP------------qdvL~~LlnnLkvqe---Rq~RvctsvaI 789 (975)
T COG5181 725 VREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGP------------QDVLDILLNNLKVQE---RQQRVCTSVAI 789 (975)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCH------------HHHHHHHHhcchHHH---HHhhhhhhhhh
Confidence 3344544 4455555 789999999999999887653 256666666665543 55666666677
Q ss_pred HHHHHhcccccHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHhHHHHHHHHhCCCcchhhHhhHhHHHHHH
Q 006253 532 NEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMG 611 (653)
Q Consensus 532 ~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~i~~ 611 (653)
+.+++.+| || .++|.++..... ++. .+++.++..+..+...+|.. -..|+-.+.+
T Consensus 790 ~iVae~cg----pf--sVlP~lm~dY~T--------Pe~-----nVQnGvLkam~fmFeyig~~------s~dYvy~itP 844 (975)
T COG5181 790 SIVAEYCG----PF--SVLPTLMSDYET--------PEA-----NVQNGVLKAMCFMFEYIGQA------SLDYVYSITP 844 (975)
T ss_pred hhhHhhcC----ch--hhHHHHHhcccC--------chh-----HHHHhHHHHHHHHHHHHHHH------HHHHHHHhhH
Confidence 88888777 55 567777665442 222 46677888888899998877 5678888888
Q ss_pred HHHHHHhccCcchhhhHHHHHHHHHH
Q 006253 612 LFLRVFAIRSATAHEEAMLAIGALAY 637 (653)
Q Consensus 612 ~l~~~l~~~~~~~~e~~~~~~~~l~~ 637 (653)
.+--.|.+.++.-|..++..+-.++-
T Consensus 845 lleDAltDrD~vhRqta~nvI~Hl~L 870 (975)
T COG5181 845 LLEDALTDRDPVHRQTAMNVIRHLVL 870 (975)
T ss_pred HHHhhhcccchHHHHHHHHHHHHHhc
Confidence 88888888777667777777766643
No 35
>PTZ00429 beta-adaptin; Provisional
Probab=99.57 E-value=5.8e-10 Score=119.03 Aligned_cols=438 Identities=11% Similarity=0.041 Sum_probs=276.8
Q ss_pred ChhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhCcchHHHHHHHHHhc--CCCChhHHHHHHHHHhhhcchhhhhhHHHh
Q 006253 1 MSAEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVN--DEKPVESRKLAGLILKNALDAKEQHRKFEL 78 (653)
Q Consensus 1 m~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~--~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~ 78 (653)
|+.-+..++..+.++|.+.|+-..-.+..+.+.+ |+.....++.+.. .+.++.+|-+|...+.+.-.
T Consensus 66 vS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~-pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~---------- 134 (746)
T PTZ00429 66 VSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQ-PEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRV---------- 134 (746)
T ss_pred chHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC-hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc----------
Confidence 3445667788888999999999999999887754 4433333333332 14578999999988877432
Q ss_pred hhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCC--chHHHHHHHhhcCCChhHHHHHHHHHH
Q 006253 79 VQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQW--PELIGALLSNIHQLPPHTKQATLETLG 156 (653)
Q Consensus 79 ~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~--~~l~~~l~~~l~~~~~~~~~~~l~~l~ 156 (653)
++..+.+...+.+++.+.++.||+.|+.++.++...+ |+ .. .++++.|.+.+.+.++.+...|+.+|.
T Consensus 135 --------~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~-pe-lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~ 204 (746)
T PTZ00429 135 --------SSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDD-MQ-LFYQQDFKKDLVELLNDNNPVVASNAAAIVC 204 (746)
T ss_pred --------HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC-cc-cccccchHHHHHHHhcCCCccHHHHHHHHHH
Confidence 4455667778889999999999999999999998875 42 22 357788888899999999999999999
Q ss_pred HHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHH
Q 006253 157 YICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIR 236 (653)
Q Consensus 157 ~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~ 236 (653)
.+.+.. ++.+ ......+..++..+. +-++=.+...+++|.. +.+. .......+++.+...+++.++.+.
T Consensus 205 eI~~~~-~~~l--~l~~~~~~~Ll~~L~--e~~EW~Qi~IL~lL~~---y~P~---~~~e~~~il~~l~~~Lq~~N~AVV 273 (746)
T PTZ00429 205 EVNDYG-SEKI--ESSNEWVNRLVYHLP--ECNEWGQLYILELLAA---QRPS---DKESAETLLTRVLPRMSHQNPAVV 273 (746)
T ss_pred HHHHhC-chhh--HHHHHHHHHHHHHhh--cCChHHHHHHHHHHHh---cCCC---CcHHHHHHHHHHHHHhcCCCHHHH
Confidence 998765 4433 223334445555555 4455556666666644 3322 112234678888888888888888
Q ss_pred HHHHHHHHHHHHHh-HHhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHH
Q 006253 237 QAAFECLVAISSTY-YEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIK 315 (653)
Q Consensus 237 ~~~~~~l~~l~~~~-~~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (653)
-++++++..+.... ++.+......+.+.++.. .+.+++++..++..+..+....+ ..+.
T Consensus 274 l~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P-------------------~lf~ 333 (746)
T PTZ00429 274 MGAIKVVANLASRCSQELIERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIFP-------------------NLLR 333 (746)
T ss_pred HHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCH-------------------HHHH
Confidence 88888888776432 233333333444444433 45677888888877666664321 1222
Q ss_pred hhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhh
Q 006253 316 HALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSIL 395 (653)
Q Consensus 316 ~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~ 395 (653)
+.+ ...+- . . .| . ..+|....+ .+.....+.-+..++.-+.+...+.+...+..++.++|.++
T Consensus 334 ~~~----~~Ff~--~-~-~D-----p-~yIK~~KLe---IL~~Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA 396 (746)
T PTZ00429 334 TNL----DSFYV--R-Y-SD-----P-PFVKLEKLR---LLLKLVTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLA 396 (746)
T ss_pred HHH----Hhhhc--c-c-CC-----c-HHHHHHHHH---HHHHHcCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence 111 11111 1 1 11 1 234554444 44444455556667777777887878888889999999988
Q ss_pred cCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhc--c--chh
Q 006253 396 EGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSM--K--DVP 471 (653)
Q Consensus 396 ~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l--~--d~~ 471 (653)
... ......++..++..+ .+....+ ..++.++..+....++ .+ ++..+...+ . +++
T Consensus 397 ~k~-----~~~a~~cV~~Ll~ll-~~~~~~v-~e~i~vik~IlrkyP~----------~~---il~~L~~~~~~~~i~e~ 456 (746)
T PTZ00429 397 IKV-----DSVAPDCANLLLQIV-DRRPELL-PQVVTAAKDIVRKYPE----------LL---MLDTLVTDYGADEVVEE 456 (746)
T ss_pred HhC-----hHHHHHHHHHHHHHh-cCCchhH-HHHHHHHHHHHHHCcc----------HH---HHHHHHHhhcccccccH
Confidence 653 233456667777777 5544333 3466777777665531 11 455555543 2 257
Q ss_pred hHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhcccc
Q 006253 472 NVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDE 541 (653)
Q Consensus 472 ~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 541 (653)
..+....|.++.+++... -.+.++..+++-+... +..+|...+.+...+.-..+.+
T Consensus 457 ~AKaaiiWILGEy~~~I~-----------~a~~~L~~~i~~f~~E---~~~VqlqlLta~vKlfl~~p~~ 512 (746)
T PTZ00429 457 EAKVSLLWMLGEYCDFIE-----------NGKDIIQRFIDTIMEH---EQRVQLAILSAAVKMFLRDPQG 512 (746)
T ss_pred HHHHHHHHHHHhhHhhHh-----------hHHHHHHHHHhhhccC---CHHHHHHHHHHHHHHHhcCcHH
Confidence 777888899998887532 1344554444433332 2567877777777777666543
No 36
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=4.7e-08 Score=102.57 Aligned_cols=445 Identities=16% Similarity=0.185 Sum_probs=272.5
Q ss_pred chHHHHHHHHHhc----CCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhccCCChHHHHHHHHHHHHhcCC--------
Q 006253 36 PGFLLSLAGELVN----DEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSS-------- 103 (653)
Q Consensus 36 ~~~~~~l~~il~~----~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~-------- 103 (653)
+++...+++++.. .-.++.+-..+..++.+.+..+ ..|..+-|-...-+.+.++.+|+-
T Consensus 297 ~~ile~~lk~l~~~~~~~yls~rvl~~~l~fl~~~Vs~~---------~twkll~PHl~~ii~~vIFPlmc~~d~deelw 367 (1010)
T KOG1991|consen 297 QGILEVFLKILEQWRQQLYLSDRVLYYLLNFLEQCVSHA---------STWKLLKPHLQVIIQDVIFPLMCFNDEDEELW 367 (1010)
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhccHH---------HHHHHhhhHHHHHHHHhhhhhcCCCcccHHHH
Confidence 4455555555432 2247888889999999998764 578888888888888888887752
Q ss_pred ---CChHHH-------------HHHHHHHHHHHhhhcCCCCCchHHHHHHHhhc------CC--ChhHHHHHHHHHHHHH
Q 006253 104 ---PAHDAR-------------STASQVVAKVAGIELPHKQWPELIGALLSNIH------QL--PPHTKQATLETLGYIC 159 (653)
Q Consensus 104 ---~~~~vr-------------~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~------~~--~~~~~~~~l~~l~~l~ 159 (653)
|.+.+| .++...+..++++..+ ...|.+++++.+.++ .+ ++..+++|+.+++.++
T Consensus 368 e~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~k-e~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~ 446 (1010)
T KOG1991|consen 368 EEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGK-ETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLA 446 (1010)
T ss_pred hcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhcch-hhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHH
Confidence 113454 4566677777877645 488999999999887 22 5678899999999999
Q ss_pred hhhc-ccccchhhHhH-HHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhc-CCcHHHH
Q 006253 160 EEVS-SDAVEQDHVNK-ILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATL-SPEVKIR 236 (653)
Q Consensus 160 ~~~~-~~~~~~~~~~~-l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~-~~~~~~~ 236 (653)
+.+. +..+ +..+.. +++.++..++ ++.--+|..|+..++.+.+ ..+.++......+......+. +.+-.++
T Consensus 447 ~~L~K~s~~-~~~mE~flv~hVfP~f~--s~~g~Lrarac~vl~~~~~---~df~d~~~l~~ale~t~~~l~~d~~lPV~ 520 (1010)
T KOG1991|consen 447 SILLKKSPY-KSQMEYFLVNHVFPEFQ--SPYGYLRARACWVLSQFSS---IDFKDPNNLSEALELTHNCLLNDNELPVR 520 (1010)
T ss_pred HHHccCCch-HHHHHHHHHHHhhHhhc--CchhHHHHHHHHHHHHHHh---ccCCChHHHHHHHHHHHHHhccCCcCchh
Confidence 8763 2222 333433 3455566666 5667899999999988543 344444333445555566665 6777889
Q ss_pred HHHHHHHHHHHHHhH---HhhHHhHHHHHHHHHHHhhcCChhHHHHHHHh-HHHhhHHHHhhhhhcCCCCCCCCCCchhh
Q 006253 237 QAAFECLVAISSTYY---EKLAPYIQDIFNITAKAVREDEEPVALQAIEF-WSSVCDEEIDILEEYGGDFSGDSDIPCFY 312 (653)
Q Consensus 237 ~~~~~~l~~l~~~~~---~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (653)
..+.-+|..+++... +.++++++.+++-++...++.+-+.-..+++- ...+++.. ..
T Consensus 521 VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseEl-------------------sP 581 (1010)
T KOG1991|consen 521 VEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEEL-------------------SP 581 (1010)
T ss_pred hHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhh-------------------ch
Confidence 888888888888765 55889999999999888887555544444432 22333321 13
Q ss_pred HHHhhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhh---cCC------CchhchHHHHHhhhcCcchhh
Q 006253 313 FIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVART---VGD------DIVPLVMPFVEENITKQEWRQ 383 (653)
Q Consensus 313 ~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~---~~~------~~~~~l~~~l~~~l~~~~~~~ 383 (653)
|...+..++.....+.+...+++++.++ .-..+|.-+|.++.+. ..+ ..-|.+.|.+...+.+.-..
T Consensus 582 fA~eL~q~La~~F~k~l~~~~~~~~~~d---dk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~d- 657 (1010)
T KOG1991|consen 582 FAVELCQNLAETFLKVLQTSEDEDESDD---DKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITD- 657 (1010)
T ss_pred hHHHHHHHHHHHHHHHHhccCCCCccch---HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHH-
Confidence 4444444444444555543222222222 1233455555555443 322 22344555554444432111
Q ss_pred HHHHHHHHHHhhcCC--CCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHH
Q 006253 384 REAATYAFGSILEGP--SPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIIS 461 (653)
Q Consensus 384 r~aal~~l~~i~~~~--~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~ 461 (653)
.+.-+-+++.++ -...+.+.+-++++.+...+ ++.-..--...+-++.++...-.+.. .....|...++.
T Consensus 658 ---fyeE~~ei~~~~t~~~~~Isp~mW~ll~li~e~~-~~~~~dyf~d~~~~l~N~vt~g~~~~----~s~~~y~~il~~ 729 (1010)
T KOG1991|consen 658 ---FYEELLEIVSSLTFLSKEISPIMWGLLELILEVF-QDDGIDYFTDMMPALHNYVTYGTPSL----LSNPDYLQILLE 729 (1010)
T ss_pred ---HHHHHHHHHhhhhhhhcccCHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhheeeCchhh----hccchHHHHHHH
Confidence 111222233322 12447788889999999999 77655555556677777766544321 235567777888
Q ss_pred HHHHhccc-h--hhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHH
Q 006253 462 VLLQSMKD-V--PNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEV 534 (653)
Q Consensus 462 ~l~~~l~d-~--~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l 534 (653)
.+-..+.+ + ..=...||..+..++-++++ .+..+++.++...+..+..... .+..|..+++++..-
T Consensus 730 i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg------~~dq~iplf~~~a~~~l~~~~e-~s~~~~~~leVvina 798 (1010)
T KOG1991|consen 730 IIKKVLTSENGEDSDCESACKLLEVIILNCKG------LLDQYIPLFLELALSRLTREVE-TSELRVMLLEVVINA 798 (1010)
T ss_pred HHHHHHcCCCCchHHHHHHHHHHHHHHHHhcC------cHhhHhHHHHHHHHHHHhcccc-chHHHHHHHHHHHHH
Confidence 77777764 2 23346789999999888763 3555666666666555554222 356666666665443
No 37
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.47 E-value=4.7e-09 Score=114.11 Aligned_cols=433 Identities=14% Similarity=0.217 Sum_probs=271.0
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHhhh--cCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccch
Q 006253 92 QIKSFILKTLSSPAHDARSTASQVVAKVAGIE--LPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQ 169 (653)
Q Consensus 92 ~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~--~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~ 169 (653)
.+.+.|+..=-||+..|+++...+..++..-- .-...++++++.|+-.+.+..+.+|++++.+|..++..-+-+.+ .
T Consensus 998 kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~-~ 1076 (1702)
T KOG0915|consen 998 KLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQV-K 1076 (1702)
T ss_pred HhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHH-H
Confidence 44556666666889999999999888886421 00024578999999999999999999999999999887522334 5
Q ss_pred hhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhh---hhhcC---ChhHHHHHHHHHHh-hhcCCcHHHHHHHHHH
Q 006253 170 DHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFA---QANFS---NDMERDYIMRVVCE-ATLSPEVKIRQAAFEC 242 (653)
Q Consensus 170 ~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~---~~~~~---~~~~~~~il~~l~~-~~~~~~~~~~~~~~~~ 242 (653)
+++.+++..++..+. |....||++|-++...+...+ .+... .....+.++|.+.. .+-+..+++|+.++..
T Consensus 1077 e~lpelw~~~fRvmD--DIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~t 1154 (1702)
T KOG0915|consen 1077 EKLPELWEAAFRVMD--DIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGT 1154 (1702)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHH
Confidence 677788888887777 777889988766554443322 11111 11122445666543 2225678999999999
Q ss_pred HHHHHHHhHHhhHHhHHHHHHHHHHHhhcCChhHHH-HHHHhHHHhhHHHHhhhhhcCCCCCCCCC----C-chhhHH-H
Q 006253 243 LVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVAL-QAIEFWSSVCDEEIDILEEYGGDFSGDSD----I-PCFYFI-K 315 (653)
Q Consensus 243 l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~-~ 315 (653)
+..++...+..+.||.++++|.++......++.+-- .+++. ..+.....|....-.. . .++ + .|.+++ .
T Consensus 1155 l~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~-~~~e~ealDt~R~s~a--k-sspmmeTi~~ci~~iD~ 1230 (1702)
T KOG0915|consen 1155 LMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRL-INIETEALDTLRASAA--K-SSPMMETINKCINYIDI 1230 (1702)
T ss_pred HHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhh-hhhHHHHHHHHHHhhh--c-CCcHHHHHHHHHHhhhH
Confidence 999999999999999999999999988776665432 22222 1111111111110000 0 000 0 133332 4
Q ss_pred hhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCCchh---chHHHHHhhhcCcchhhHHHHHHHHH
Q 006253 316 HALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVP---LVMPFVEENITKQEWRQREAATYAFG 392 (653)
Q Consensus 316 ~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~---~l~~~l~~~l~~~~~~~r~aal~~l~ 392 (653)
..+++++|.+.+.++.. -.-..|..++..+..++..+|.++-| .++..+-..+.|.+..+|.+-..++|
T Consensus 1231 ~vLeelip~l~el~R~s--------Vgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG 1302 (1702)
T KOG0915|consen 1231 SVLEELIPRLTELVRGS--------VGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMG 1302 (1702)
T ss_pred HHHHHHHHHHHHHHhcc--------CCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHH
Confidence 56778888888877632 11355778889999999999977766 55666666778888999999999999
Q ss_pred HhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccch-h
Q 006253 393 SILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDV-P 471 (653)
Q Consensus 393 ~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~-~ 471 (653)
.++...++++...++...+-.++.-. .+++ ..++..+.+++....+ ..+.|-+.++|...=..++. +
T Consensus 1303 ~L~k~Ss~dq~qKLie~~l~~~l~k~-es~~----siscatis~Ian~s~e-------~Lkn~asaILPLiFLa~~ee~K 1370 (1702)
T KOG0915|consen 1303 YLAKFSSPDQMQKLIETLLADLLGKD-ESLK----SISCATISNIANYSQE-------MLKNYASAILPLIFLAMHEEEK 1370 (1702)
T ss_pred HHHhcCChHHHHHHHHHHHHHHhccC-CCcc----chhHHHHHHHHHhhHH-------HHHhhHHHHHHHHHHHHhHHHH
Confidence 99987665666666666555544322 2222 4455555555544432 35778889999877666642 1
Q ss_pred hHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhccccc-HHHHHHHH
Q 006253 472 NVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDET-APMVMQLV 550 (653)
Q Consensus 472 ~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~~~~l~ 550 (653)
.. +.....+-....+ +....+.-|.+.++..++.-..+.+ .-.+|..+..++...+....... .|+...+.
T Consensus 1371 a~----q~Lw~dvW~e~vs--ggagtvrl~~~eiLn~iceni~nn~--~w~lr~q~Akai~~~a~~~sss~~~p~ilkl~ 1442 (1702)
T KOG0915|consen 1371 AN----QELWNDVWAELVS--GGAGTVRLYLLEILNLICENITNNE--SWKLRKQAAKAIRVIAEGLSSSAPIPVILKLA 1442 (1702)
T ss_pred HH----HHHHHHHHHHhCC--CCcchhhhhHHHHHHHHHHHhccch--HHHHHHHHHHHHHHHcccccccCChHHHHHHH
Confidence 11 1222333332222 1123343377766665554443332 25677666666666665554443 47877777
Q ss_pred HHHHHHHHH
Q 006253 551 PLIMMELHQ 559 (653)
Q Consensus 551 ~~l~~~l~~ 559 (653)
+.+...+..
T Consensus 1443 ~~ll~~L~G 1451 (1702)
T KOG0915|consen 1443 LSLLDTLNG 1451 (1702)
T ss_pred HHHHHHhhc
Confidence 777666554
No 38
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=5e-12 Score=125.24 Aligned_cols=362 Identities=15% Similarity=0.217 Sum_probs=244.3
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcC
Q 006253 133 IGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFS 212 (653)
Q Consensus 133 ~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~ 212 (653)
.+...+.+.++++..+..+...+..+.......-+..-....++|.+++++.. +.++.++..|..+|.++.....+...
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~-~~~~~lq~eAAWaLTnIAsgtse~T~ 146 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSR-DDNPTLQFEAAWALTNIASGTSEQTK 146 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHcc-CCChhHHHHHHHHHHHHhcCchhhcc
Confidence 56677777888888888888888877664321112122345789999999975 67799999999999998765433211
Q ss_pred ChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhHH--HHHHHHHHHhhcCCh-hHHHHHHHhHHHhhH
Q 006253 213 NDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQ--DIFNITAKAVREDEE-PVALQAIEFWSSVCD 289 (653)
Q Consensus 213 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~--~l~~~~~~~~~~~~~-~~~~~a~~~~~~~~~ 289 (653)
.. ....-++.+..++..++.+++..++.+|+.++...+. ++.++- .+++.++..+...+. .+...+...+..+|.
T Consensus 147 ~v-v~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~-~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcr 224 (514)
T KOG0166|consen 147 VV-VDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPD-CRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCR 224 (514)
T ss_pred cc-ccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChH-HHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHc
Confidence 00 0123567788888899999999999999999987654 455543 466777777765554 566677777888886
Q ss_pred HHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCCc----h
Q 006253 290 EEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDI----V 365 (653)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~~----~ 365 (653)
.. .+-+.+.-+ ..++|.+...+...|+ .+..-|..++..++....+.+ -
T Consensus 225 gk--------------~P~P~~~~v----~~iLp~L~~ll~~~D~---------~Vl~Da~WAlsyLsdg~ne~iq~vi~ 277 (514)
T KOG0166|consen 225 GK--------------NPSPPFDVV----APILPALLRLLHSTDE---------EVLTDACWALSYLTDGSNEKIQMVID 277 (514)
T ss_pred CC--------------CCCCcHHHH----HHHHHHHHHHHhcCCH---------HHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 31 001122223 3566777766653221 345667777777776554321 1
Q ss_pred hchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHH-HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccC
Q 006253 366 PLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLV-NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGS 444 (653)
Q Consensus 366 ~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l-~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~ 444 (653)
.-+++.+...+.+++..++-.|+.++|.|+.|.+ .+....+ ...+|.+...+.+++...+|..|+|++++++..-..
T Consensus 278 ~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d-~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~- 355 (514)
T KOG0166|consen 278 AGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSD-EQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQE- 355 (514)
T ss_pred ccchHHHHHHHcCCCcccccHHHhhccceeeccH-HHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHH-
Confidence 2455666677888888899999999999998853 3332223 256787777773367777999999999999875442
Q ss_pred CCCccccCccchHHHHHHHHHhccc-hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhH--HHHHHHHHHhccccccchh
Q 006253 445 TLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFF--QEIVQALLTVTHREDAGES 521 (653)
Q Consensus 445 ~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l--~~i~~~L~~~l~~~~~~~~ 521 (653)
....-.-..++|.|+..+.. +.+.|..|++|+++++..-. ..-..|+ ..+++.++.++.-.+ .
T Consensus 356 -----qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~------~~qi~yLv~~giI~plcdlL~~~D---~ 421 (514)
T KOG0166|consen 356 -----QIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGT------PEQIKYLVEQGIIKPLCDLLTCPD---V 421 (514)
T ss_pred -----HHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCC------HHHHHHHHHcCCchhhhhcccCCC---h
Confidence 12333445788999999886 68999999999999986521 1222333 357788888885544 3
Q ss_pred chHHHHHHHHHHHHHhccc
Q 006253 522 RLRTAAYETLNEVVRCSTD 540 (653)
Q Consensus 522 ~~~~~~~~~l~~l~~~~~~ 540 (653)
.+-..+++++..+.+....
T Consensus 422 ~ii~v~Ld~l~nil~~~e~ 440 (514)
T KOG0166|consen 422 KIILVALDGLENILKVGEA 440 (514)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4456889999888776543
No 39
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.44 E-value=1.9e-09 Score=113.84 Aligned_cols=450 Identities=14% Similarity=0.127 Sum_probs=286.4
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCC
Q 006253 107 DARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNAS 186 (653)
Q Consensus 107 ~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 186 (653)
.-|..+|.+++..+....+...-.++.+...+..++..+.+|.++..-++.++... +. ......+++.+.+...
T Consensus 213 ~sr~sacglf~~~~~~~~~~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~-~~---~~~~s~v~~~~~~L~~-- 286 (759)
T KOG0211|consen 213 QSRLSACGLFGKLYVSLPDDAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVL-ES---EIVKSEVLPTLIQLLR-- 286 (759)
T ss_pred hcchhhhhhhHHhccCCChHHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHH-HH---HHHHhhccHHHhhhhh--
Confidence 44666666666665433211123567777778888889999999998888888776 33 2234556777777777
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHH
Q 006253 187 ESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITA 266 (653)
Q Consensus 187 ~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~ 266 (653)
|....||.+|.+++..+..++.... ...+.+.+.+.+...+.++.++-.+.+....+....+. ...-...++...
T Consensus 287 DdqdsVr~~a~~~~~~l~~l~~~~~---d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~ 361 (759)
T KOG0211|consen 287 DDQDSVREAAVESLVSLLDLLDDDD---DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVS 361 (759)
T ss_pred cchhhHHHHHHHHHHHHHHhcCCch---hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHH
Confidence 7778999999999999888765322 23467888888888888888888877777776665543 122235566666
Q ss_pred HHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccccHh
Q 006253 267 KAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIA 346 (653)
Q Consensus 267 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r 346 (653)
..+++...+.+.....-...++... +...+..-..+.++|.+..... +....+|
T Consensus 362 ~l~~~~~~e~r~a~a~~~~~l~~~l-----------------~~~~~~~i~~~~ilp~~~~lv~---------d~~~~vr 415 (759)
T KOG0211|consen 362 NLLKDEEWEVRYAIAKKVQKLACYL-----------------NASCYPNIPDSSILPEVQVLVL---------DNALHVR 415 (759)
T ss_pred HHhcchhhhhhHHhhcchHHHhhhc-----------------CcccccccchhhhhHHHHHHHh---------cccchHH
Confidence 6777766666654432222222210 0001111122234555444332 1123456
Q ss_pred hhHHHHHHHHHhhcC-CCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchH
Q 006253 347 MAGGTCLGLVARTVG-DDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNH 425 (653)
Q Consensus 347 ~~a~~~L~~l~~~~~-~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~ 425 (653)
.+.+....-+...+| +..++.+.|....++++....+|......+..+-...+...........+|.+...- .|.+.+
T Consensus 416 ~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~-~d~~wR 494 (759)
T KOG0211|consen 416 SALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELA-EDLLWR 494 (759)
T ss_pred HHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhc-cchhHH
Confidence 555544444444444 456778888888888888889998888766554443322334555667788887766 788999
Q ss_pred HHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHh-ccc-hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHH
Q 006253 426 VKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQS-MKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQ 503 (653)
Q Consensus 426 vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~-l~d-~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~ 503 (653)
+|.+..+.+-..+.... ..++.+-+..+... +.| ...+|.+|+..+..++..++ ..=+..
T Consensus 495 vr~ail~~ip~la~q~~----------~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G--------~~w~~~ 556 (759)
T KOG0211|consen 495 VRLAILEYIPQLALQLG----------VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG--------SEWARL 556 (759)
T ss_pred HHHHHHHHHHHHHHhhh----------hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC--------cchhHH
Confidence 99999999988887653 23444444444443 334 36889999999999998865 233566
Q ss_pred HHHHHHHHhccccccchhchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHh
Q 006253 504 EIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCG 583 (653)
Q Consensus 504 ~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 583 (653)
.+++.++....+.. ...|...+.++..++..+|..+ +-..++|.+.+.... . ...+|..++.
T Consensus 557 ~~i~k~L~~~~q~~---y~~R~t~l~si~~la~v~g~ei--~~~~Llp~~~~l~~D-----------~--vanVR~nvak 618 (759)
T KOG0211|consen 557 EEIPKLLAMDLQDN---YLVRMTTLFSIHELAEVLGQEI--TCEDLLPVFLDLVKD-----------P--VANVRINVAK 618 (759)
T ss_pred HhhHHHHHHhcCcc---cchhhHHHHHHHHHHHHhccHH--HHHHHhHHHHHhccC-----------C--chhhhhhHHH
Confidence 77888887776653 4678889999999999999754 445566666553332 1 2357777788
Q ss_pred HHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHH
Q 006253 584 CLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYA 638 (653)
Q Consensus 584 ~i~~i~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~e~~~~~~~~l~~~ 638 (653)
.+..+...+... -.-..+.+.+.....+.+..+|-.|..+++.+...
T Consensus 619 ~L~~i~~~L~~~--------~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~ 665 (759)
T KOG0211|consen 619 HLPKILKLLDES--------VRDEEVLPLLETLSSDQELDVRYRAILAFGSIELS 665 (759)
T ss_pred HHHHHHhhcchH--------HHHHHHHHHHHHhccCcccchhHHHHHHHHHHHHH
Confidence 888877777643 22333444443444455556776677676666543
No 40
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.44 E-value=1.6e-10 Score=121.71 Aligned_cols=419 Identities=13% Similarity=0.105 Sum_probs=289.5
Q ss_pred HHHHHHHHhcC-CChHHHHHHHHHHHHHHhh-----CcchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHH
Q 006253 4 EVTQILLNAQS-VDGTVRKQAEESLKQYQEQ-----NLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFE 77 (653)
Q Consensus 4 ~l~~ll~~~~s-~d~~~r~~A~~~L~~~~~~-----~~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~ 77 (653)
++....+.+.. ..+.+|+.+.+.+..+.+- ...+....+.++..+ ..+.+|.+|.-.+.+.....
T Consensus 237 elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~D--dqdsVr~~a~~~~~~l~~l~------- 307 (759)
T KOG0211|consen 237 ELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRD--DQDSVREAAVESLVSLLDLL------- 307 (759)
T ss_pred HHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhc--chhhHHHHHHHHHHHHHHhc-------
Confidence 34455555544 4578899988888755332 124555566666665 36899998887776655421
Q ss_pred hhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHH
Q 006253 78 LVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGY 157 (653)
Q Consensus 78 ~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~ 157 (653)
. -+.+....+.+.+++...+++..+|...+.....+.....|...|+++++.....+++.....|.+...-...
T Consensus 308 -----~-~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~ 381 (759)
T KOG0211|consen 308 -----D-DDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQK 381 (759)
T ss_pred -----C-CchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHH
Confidence 1 1116667788899999999999999999999999988877767899999999999999888888888877777
Q ss_pred HHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHH
Q 006253 158 ICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQ 237 (653)
Q Consensus 158 l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~ 237 (653)
++...+..-........++|.+..... |.+..+|.+............+ .+.....+++.+....++.+++++.
T Consensus 382 l~~~l~~~~~~~i~~~~ilp~~~~lv~--d~~~~vr~a~a~~~~~~~p~~~----k~~ti~~llp~~~~~l~de~~~V~l 455 (759)
T KOG0211|consen 382 LACYLNASCYPNIPDSSILPEVQVLVL--DNALHVRSALASVITGLSPILP----KERTISELLPLLIGNLKDEDPIVRL 455 (759)
T ss_pred HhhhcCcccccccchhhhhHHHHHHHh--cccchHHHHHhccccccCccCC----cCcCccccChhhhhhcchhhHHHHH
Confidence 777764211102234556777777777 7888888766554443332222 1112256778888888889999999
Q ss_pred HHHHHHHHHHHHhHHhh--HHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHH
Q 006253 238 AAFECLVAISSTYYEKL--APYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIK 315 (653)
Q Consensus 238 ~~~~~l~~l~~~~~~~~--~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (653)
+..+.+..+-... +.. ..+.+..+|.+.....+....+|...++++..++..- ...+..
T Consensus 456 nli~~ls~~~~v~-~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~------------------~~~~~~ 516 (759)
T KOG0211|consen 456 NLIDKLSLLEEVN-DVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQL------------------GVEFFD 516 (759)
T ss_pred hhHHHHHHHHhcc-CcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhh------------------hhHHhh
Confidence 9988775444332 222 2344567777777666667888888888877777531 011222
Q ss_pred hhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCCc-hhchHHHHHhhhcCcchhhHHHHHHHHHHh
Q 006253 316 HALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDI-VPLVMPFVEENITKQEWRQREAATYAFGSI 394 (653)
Q Consensus 316 ~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~~-~~~l~~~l~~~l~~~~~~~r~aal~~l~~i 394 (653)
+ .+-+.+..++. +..+.+|.+|+..+..++..+|... ...+++.+..+..+++|..|.+.+.++..+
T Consensus 517 ~---~~~~l~~~~l~---------d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~l 584 (759)
T KOG0211|consen 517 E---KLAELLRTWLP---------DHVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHEL 584 (759)
T ss_pred H---HHHHHHHhhhh---------hhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCcccchhhHHHHHHHHH
Confidence 1 23445555543 1346899999999999999999433 445666666677777899999999999999
Q ss_pred hcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc-hhhH
Q 006253 395 LEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNV 473 (653)
Q Consensus 395 ~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v 473 (653)
++-++.+. +...++|.+.... +|+.+.||-.+++.+..+...+.. ...-..+.|.+.....| +..|
T Consensus 585 a~v~g~ei---~~~~Llp~~~~l~-~D~vanVR~nvak~L~~i~~~L~~---------~~~~~~v~pll~~L~~d~~~dv 651 (759)
T KOG0211|consen 585 AEVLGQEI---TCEDLLPVFLDLV-KDPVANVRINVAKHLPKILKLLDE---------SVRDEEVLPLLETLSSDQELDV 651 (759)
T ss_pred HHHhccHH---HHHHHhHHHHHhc-cCCchhhhhhHHHHHHHHHhhcch---------HHHHHHHHHHHHHhccCcccch
Confidence 98775332 3456788888888 999999999999999999988752 23334455555554446 5778
Q ss_pred HHHHHHHHHHHHhc
Q 006253 474 AEKACGALYFLAQG 487 (653)
Q Consensus 474 ~~~a~~al~~~~~~ 487 (653)
|..|..++..+...
T Consensus 652 r~~a~~a~~~i~l~ 665 (759)
T KOG0211|consen 652 RYRAILAFGSIELS 665 (759)
T ss_pred hHHHHHHHHHHHHH
Confidence 87777777765543
No 41
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=3.1e-10 Score=112.78 Aligned_cols=346 Identities=13% Similarity=0.112 Sum_probs=245.7
Q ss_pred ChhHHHHHHHHHhhhcchhhhhhHHHhhhhccCCChHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHHHhhhcCCC---
Q 006253 52 PVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSS-PAHDARSTASQVVAKVAGIELPHK--- 127 (653)
Q Consensus 52 ~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~-~~~~vr~~~~~~l~~ia~~~~~~~--- 127 (653)
+.+.++.+...+++.+..-. . ..+..-.+..+.+.++++|.. .++.++-.+|-++..||.......
T Consensus 79 ~~~~q~~a~~~~rkllS~~~---------~-ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~v 148 (514)
T KOG0166|consen 79 DPQQQLTATQAFRKLLSKER---------N-PPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVV 148 (514)
T ss_pred CHHHHHHHHHHHHHHHccCC---------C-CCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcccc
Confidence 56668888888888775421 1 335555666788899999975 458999999999999998753321
Q ss_pred CCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhH--hHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHH
Q 006253 128 QWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHV--NKILTAVVQGMNASESNNDVRLAATRALYNALG 205 (653)
Q Consensus 128 ~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~ 205 (653)
.-.+.+|.+++++.+++..+++.|..+|+.++... +. + +.++ ..+++.++..+.. +........+..+|++++.
T Consensus 149 v~agavp~fi~Ll~s~~~~v~eQavWALgNIagds-~~-~-Rd~vl~~g~l~pLl~~l~~-~~~~~~lRn~tW~LsNlcr 224 (514)
T KOG0166|consen 149 VDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDS-PD-C-RDYVLSCGALDPLLRLLNK-SDKLSMLRNATWTLSNLCR 224 (514)
T ss_pred ccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCC-hH-H-HHHHHhhcchHHHHHHhcc-ccchHHHHHHHHHHHHHHc
Confidence 12578899999999999999999999999998875 33 2 3333 2355666666664 2223566778899999776
Q ss_pred hhhhhcCCh-hHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhHH-HHHHHHHHHhhcCChhHHHHHHHh
Q 006253 206 FAQANFSND-MERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQ-DIFNITAKAVREDEEPVALQAIEF 283 (653)
Q Consensus 206 ~~~~~~~~~-~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~~~~~a~~~ 283 (653)
.-. .... .....++|.+..++.+.|+++...+++++.-+.....+.+.-.+. .++|.+...+.+.+..++..|+..
T Consensus 225 gk~--P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRa 302 (514)
T KOG0166|consen 225 GKN--PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRA 302 (514)
T ss_pred CCC--CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhh
Confidence 432 1111 123678999999999999999999999999998877776655555 688999999999999999999998
Q ss_pred HHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhh-hhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCC
Q 006253 284 WSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHA-LPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGD 362 (653)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~ 362 (653)
++.++... + .....+ -...+|.+...+..... -.+|+.|..+++.+.....+
T Consensus 303 iGNIvtG~-d------------------~QTq~vi~~~~L~~l~~ll~~s~~--------~~ikkEAcW~iSNItAG~~~ 355 (514)
T KOG0166|consen 303 IGNIVTGS-D------------------EQTQVVINSGALPVLSNLLSSSPK--------ESIKKEACWTISNITAGNQE 355 (514)
T ss_pred ccceeecc-H------------------HHHHHHHhcChHHHHHHHhccCcc--------hhHHHHHHHHHHHhhcCCHH
Confidence 88876421 0 111111 12456666666553222 14788899999888764332
Q ss_pred ---C-chhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHH--HHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 006253 363 ---D-IVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVN--IALNFMLTALMQDPNNHVKDTTAWTLGR 436 (653)
Q Consensus 363 ---~-~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~--~l~~~ll~~l~~d~~~~vr~~a~~~l~~ 436 (653)
. +-.-++|.+...+.+.+.+.|..|+|+++.++.+..++.+ .|+- .+++.+...| .-.+..+...++.+++.
T Consensus 356 qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi-~yLv~~giI~plcdlL-~~~D~~ii~v~Ld~l~n 433 (514)
T KOG0166|consen 356 QIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQI-KYLVEQGIIKPLCDLL-TCPDVKIILVALDGLEN 433 (514)
T ss_pred HHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHH-HHHHHcCCchhhhhcc-cCCChHHHHHHHHHHHH
Confidence 1 2235777777888888899999999999998887654433 3432 3677777777 66777778888888888
Q ss_pred HHhhhc
Q 006253 437 MFEFLH 442 (653)
Q Consensus 437 ~~~~~~ 442 (653)
+-+...
T Consensus 434 il~~~e 439 (514)
T KOG0166|consen 434 ILKVGE 439 (514)
T ss_pred HHHHHH
Confidence 776543
No 42
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.38 E-value=1.2e-10 Score=130.48 Aligned_cols=271 Identities=18% Similarity=0.205 Sum_probs=193.1
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhHhH
Q 006253 95 SFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNK 174 (653)
Q Consensus 95 ~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~ 174 (653)
+.|++.|.++++.||..++.+|+.+. + ++.++.|.+.+.++++.+|..++..|..+.+.. +. .
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~----~----~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~-~~------~-- 686 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETT----P----PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL-PP------A-- 686 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhc----c----hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc-Cc------h--
Confidence 56777888999999999999998874 2 567888999999999999999999998775533 11 1
Q ss_pred HHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhh
Q 006253 175 ILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKL 254 (653)
Q Consensus 175 l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 254 (653)
+.+...+. ++++.||..|+.+|..+-. .. ...+...+.++++.+|..++..|..+-.
T Consensus 687 --~~L~~~L~--~~d~~VR~~A~~aL~~~~~------~~-------~~~l~~~L~D~d~~VR~~Av~aL~~~~~------ 743 (897)
T PRK13800 687 --PALRDHLG--SPDPVVRAAALDVLRALRA------GD-------AALFAAALGDPDHRVRIEAVRALVSVDD------ 743 (897)
T ss_pred --HHHHHHhc--CCCHHHHHHHHHHHHhhcc------CC-------HHHHHHHhcCCCHHHHHHHHHHHhcccC------
Confidence 23344555 6788999999998886320 00 1234557788999999999999887521
Q ss_pred HHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccC
Q 006253 255 APYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEE 334 (653)
Q Consensus 255 ~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~e 334 (653)
.+.+...+.|.++++|..+...+..+..... ..++.+...+.
T Consensus 744 -------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------------------------~~~~~L~~ll~---- 785 (897)
T PRK13800 744 -------VESVAGAATDENREVRIAVAKGLATLGAGGA---------------------------PAGDAVRALTG---- 785 (897)
T ss_pred -------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------------------------hhHHHHHHHhc----
Confidence 0223456788999999999887776654210 01233443332
Q ss_pred CccCCCccccHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHH
Q 006253 335 DQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFM 414 (653)
Q Consensus 335 d~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l 414 (653)
|+++.+|..|..+|..+... +.+.+.+...+.|++|.+|.+|+.+|+.+... ..++.|
T Consensus 786 -----D~d~~VR~aA~~aLg~~g~~------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~-----------~a~~~L 843 (897)
T PRK13800 786 -----DPDPLVRAAALAALAELGCP------PDDVAAATAALRASAWQVRQGAARALAGAAAD-----------VAVPAL 843 (897)
T ss_pred -----CCCHHHHHHHHHHHHhcCCc------chhHHHHHHHhcCCChHHHHHHHHHHHhcccc-----------chHHHH
Confidence 12267899888888776321 22334566788999999999999999976532 124778
Q ss_pred HHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc-hhhHHHHHHHHHH
Q 006253 415 LTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALY 482 (653)
Q Consensus 415 l~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~ 482 (653)
...+ +|+++.||.+|+++|+++.. -+...+.|...+.| ++.||..|..+|.
T Consensus 844 ~~~L-~D~~~~VR~~A~~aL~~~~~----------------~~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 844 VEAL-TDPHLDVRKAAVLALTRWPG----------------DPAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HHHh-cCCCHHHHHHHHHHHhccCC----------------CHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 8889 99999999999999998610 12346666677776 7899999999886
No 43
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.34 E-value=1.5e-09 Score=113.12 Aligned_cols=402 Identities=16% Similarity=0.193 Sum_probs=257.3
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhHhHHH
Q 006253 97 ILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKIL 176 (653)
Q Consensus 97 ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~ 176 (653)
++.+|.+.+...-..++.+|..+.....|....+++.+.+...+.++++.+|..++..++.+++.. ......-.-..++
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~-~~~~~~~~~~~l~ 121 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHS-EGAAQLLVDNELL 121 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-HHHHHHhcCccHH
Confidence 788888877666678889999988876554446889999999999999999999999999887764 2212011225688
Q ss_pred HHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHH
Q 006253 177 TAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAP 256 (653)
Q Consensus 177 ~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 256 (653)
+.+..++. +++..+...|+++|..+..+-.. .. .-+.......+...+...+..+|-.+++++..++...++.+..
T Consensus 122 ~~i~~~L~--~~d~~Va~~A~~~L~~l~~~~~~-~~-~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~ 197 (503)
T PF10508_consen 122 PLIIQCLR--DPDLSVAKAAIKALKKLASHPEG-LE-QLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEA 197 (503)
T ss_pred HHHHHHHc--CCcHHHHHHHHHHHHHHhCCchh-HH-HHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 89999998 89999999999999998763211 10 0001223666677776667889999999999999887765543
Q ss_pred hHH-HHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCC
Q 006253 257 YIQ-DIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEED 335 (653)
Q Consensus 257 ~l~-~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed 335 (653)
... .+++.+++.++++|.-++..+++.+..++.... ..+|+.. ..+++.+...+...++|
T Consensus 198 ~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~-----------------g~~yL~~--~gi~~~L~~~l~~~~~d 258 (503)
T PF10508_consen 198 VVNSGLLDLLLKELDSDDILVQLNALELLSELAETPH-----------------GLQYLEQ--QGIFDKLSNLLQDSEED 258 (503)
T ss_pred HHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChh-----------------HHHHHHh--CCHHHHHHHHHhccccC
Confidence 332 599999999999888899999999999987321 1233322 14666777766654444
Q ss_pred ccCCCccccHhh-hHHHHHHHHHhhcCCC---chhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCC-CCcc----hHH
Q 006253 336 QDQDEGAWNIAM-AGGTCLGLVARTVGDD---IVPLVMPFVEENITKQEWRQREAATYAFGSILEGPS-PEKL----VPL 406 (653)
Q Consensus 336 ~~~d~~~~~~r~-~a~~~L~~l~~~~~~~---~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~-~~~~----~~~ 406 (653)
+ ..-.+.. ......+.++...+.. ..|.++..+...+.+.+...+.+|+-++|.++.... ...+ .+-
T Consensus 259 p----~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~ 334 (503)
T PF10508_consen 259 P----RLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPA 334 (503)
T ss_pred C----cccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchH
Confidence 3 0112222 2235666666653332 357777777788888899999999999999986421 1111 223
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHH---------HHHHhccch-hhHHHH
Q 006253 407 VNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIIS---------VLLQSMKDV-PNVAEK 476 (653)
Q Consensus 407 l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~---------~l~~~l~d~-~~v~~~ 476 (653)
+..++..+.... ......+|.+++.+++.+........ ..........++. .+...++.. +.+|..
T Consensus 335 ~~~~l~~~~~~~-~~~~~~lk~r~l~al~~il~~~~~~~---~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a 410 (503)
T PF10508_consen 335 MKHVLKAIGDAI-KSGSTELKLRALHALASILTSGTDRQ---DNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCA 410 (503)
T ss_pred HHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHhcCCCCc---hHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHH
Confidence 445666666666 66777899999999999975443210 0000011112222 223333323 688989
Q ss_pred HHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhc
Q 006253 477 ACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCS 538 (653)
Q Consensus 477 a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~ 538 (653)
+...+..++..-- .....--.+.++..++..-.+. ++..++.=++++..++...
T Consensus 411 ~~~~l~~l~~~~W-----g~~~i~~~~gfie~lldr~~E~---~K~~ke~K~~ii~~l~~~~ 464 (503)
T PF10508_consen 411 AYRLLQALAAQPW-----GQREICSSPGFIEYLLDRSTET---TKEGKEAKYDIIKALAKSS 464 (503)
T ss_pred HHHHHHHHhcCHH-----HHHHHHhCccHHhhhcCCCCCC---CHHHHHHHHHHHHHHHhcc
Confidence 9888888886410 0000111233444443332222 3455555566777776543
No 44
>PRK09687 putative lyase; Provisional
Probab=99.34 E-value=1.5e-10 Score=110.20 Aligned_cols=251 Identities=18% Similarity=0.203 Sum_probs=172.9
Q ss_pred HHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhH
Q 006253 179 VVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYI 258 (653)
Q Consensus 179 l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l 258 (653)
+...+. |.+..+|..|+.+|..+- . ..+++.+..+++++++.+|..+...|+.+...... .
T Consensus 28 L~~~L~--d~d~~vR~~A~~aL~~~~--------~----~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~ 88 (280)
T PRK09687 28 LFRLLD--DHNSLKRISSIRVLQLRG--------G----QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----Q 88 (280)
T ss_pred HHHHHh--CCCHHHHHHHHHHHHhcC--------c----chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----h
Confidence 334445 899999999999987621 1 34666677777889999999999999997542110 2
Q ss_pred HHHHHHHHHH-hhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCcc
Q 006253 259 QDIFNITAKA-VREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQD 337 (653)
Q Consensus 259 ~~l~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~ 337 (653)
...++.+... .++.++.||..++..++.++.... .. .+.+++.+...+.
T Consensus 89 ~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~-------------------~~----~~~a~~~l~~~~~------- 138 (280)
T PRK09687 89 DNVFNILNNLALEDKSACVRASAINATGHRCKKNP-------------------LY----SPKIVEQSQITAF------- 138 (280)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccc-------------------cc----chHHHHHHHHHhh-------
Confidence 3455555544 567889999999988888764210 00 1122233322222
Q ss_pred CCCccccHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHH
Q 006253 338 QDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTA 417 (653)
Q Consensus 338 ~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~ 417 (653)
|++|.+|..+..+|+.+. -+..++.+...+.|++|.+|..|..+||.+..+. +...+.+...
T Consensus 139 --D~~~~VR~~a~~aLg~~~-------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~---------~~~~~~L~~~ 200 (280)
T PRK09687 139 --DKSTNVRFAVAFALSVIN-------DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN---------PDIREAFVAM 200 (280)
T ss_pred --CCCHHHHHHHHHHHhccC-------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC---------HHHHHHHHHH
Confidence 234899999999886442 2345566667788999999999999999983321 2456778888
Q ss_pred hcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccchhhHHHHHHHHHHHHHhcccCCCCCCCC
Q 006253 418 LMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSP 497 (653)
Q Consensus 418 l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~al~~~~~~~~~~~~~~~~ 497 (653)
+ +|+++.||..|.++||++.. ...+|.|+..+.+. .++..++.+++.+=.
T Consensus 201 L-~D~~~~VR~~A~~aLg~~~~-----------------~~av~~Li~~L~~~-~~~~~a~~ALg~ig~----------- 250 (280)
T PRK09687 201 L-QDKNEEIRIEAIIGLALRKD-----------------KRVLSVLIKELKKG-TVGDLIIEAAGELGD----------- 250 (280)
T ss_pred h-cCCChHHHHHHHHHHHccCC-----------------hhHHHHHHHHHcCC-chHHHHHHHHHhcCC-----------
Confidence 9 99999999999999998532 25688888888753 367778888776621
Q ss_pred CchhHHHHHHHHHHhccccccchhchHHHHHHHHHH
Q 006253 498 LTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNE 533 (653)
Q Consensus 498 l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~ 533 (653)
+..++.|.++++... +..++..+.++|..
T Consensus 251 -----~~a~p~L~~l~~~~~--d~~v~~~a~~a~~~ 279 (280)
T PRK09687 251 -----KTLLPVLDTLLYKFD--DNEIITKAIDKLKR 279 (280)
T ss_pred -----HhHHHHHHHHHhhCC--ChhHHHHHHHHHhc
Confidence 256777777776444 46677788877753
No 45
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.34 E-value=2.8e-10 Score=127.49 Aligned_cols=275 Identities=19% Similarity=0.221 Sum_probs=195.6
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 006253 38 FLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVA 117 (653)
Q Consensus 38 ~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~ 117 (653)
-+..|.+.|.+ .++.+|..|+..|...-. ....+.|.+.|.++++.||..++.+++
T Consensus 622 ~~~~L~~~L~D--~d~~VR~~Av~~L~~~~~----------------------~~~~~~L~~aL~D~d~~VR~~Aa~aL~ 677 (897)
T PRK13800 622 SVAELAPYLAD--PDPGVRRTAVAVLTETTP----------------------PGFGPALVAALGDGAAAVRRAAAEGLR 677 (897)
T ss_pred hHHHHHHHhcC--CCHHHHHHHHHHHhhhcc----------------------hhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 44466677764 589999999999887332 124567788899999999999999998
Q ss_pred HHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHH
Q 006253 118 KVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAAT 197 (653)
Q Consensus 118 ~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~ 197 (653)
.++... +. .+.+...++++++.+|..++..|..+-. .. . ..+...+. |+++.||..|+
T Consensus 678 ~l~~~~------~~-~~~L~~~L~~~d~~VR~~A~~aL~~~~~---~~------~----~~l~~~L~--D~d~~VR~~Av 735 (897)
T PRK13800 678 ELVEVL------PP-APALRDHLGSPDPVVRAAALDVLRALRA---GD------A----ALFAAALG--DPDHRVRIEAV 735 (897)
T ss_pred HHHhcc------Cc-hHHHHHHhcCCCHHHHHHHHHHHHhhcc---CC------H----HHHHHHhc--CCCHHHHHHHH
Confidence 886422 11 2567777888999999999999876421 10 1 12345666 89999999999
Q ss_pred HHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhcCChhHH
Q 006253 198 RALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVA 277 (653)
Q Consensus 198 ~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 277 (653)
.+|..+ .. .+.+...+.++++++|..+...|..+....+. .++.+...++|.++.+|
T Consensus 736 ~aL~~~--------~~-------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~--------~~~~L~~ll~D~d~~VR 792 (897)
T PRK13800 736 RALVSV--------DD-------VESVAGAATDENREVRIAVAKGLATLGAGGAP--------AGDAVRALTGDPDPLVR 792 (897)
T ss_pred HHHhcc--------cC-------cHHHHHHhcCCCHHHHHHHHHHHHHhccccch--------hHHHHHHHhcCCCHHHH
Confidence 998863 11 12345677889999999999999886543221 24555677888999999
Q ss_pred HHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHH
Q 006253 278 LQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVA 357 (653)
Q Consensus 278 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~ 357 (653)
..++..+..+.... .+.+.+...+. +++|.+|..|..+|..+.
T Consensus 793 ~aA~~aLg~~g~~~----------------------------~~~~~l~~aL~---------d~d~~VR~~Aa~aL~~l~ 835 (897)
T PRK13800 793 AAALAALAELGCPP----------------------------DDVAAATAALR---------ASAWQVRQGAARALAGAA 835 (897)
T ss_pred HHHHHHHHhcCCcc----------------------------hhHHHHHHHhc---------CCChHHHHHHHHHHHhcc
Confidence 99998877665321 01122333332 234999999999998653
Q ss_pred hhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 006253 358 RTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGR 436 (653)
Q Consensus 358 ~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~ 436 (653)
. +..++.+...+.|++|.+|.+|+.+|+.+. +. +...+.+...+ +|+++.||..|..+|..
T Consensus 836 ---~----~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~-~~---------~~a~~~L~~al-~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 836 ---A----DVAVPALVEALTDPHLDVRKAAVLALTRWP-GD---------PAARDALTTAL-TDSDADVRAYARRALAH 896 (897)
T ss_pred ---c----cchHHHHHHHhcCCCHHHHHHHHHHHhccC-CC---------HHHHHHHHHHH-hCCCHHHHHHHHHHHhh
Confidence 1 234466667789999999999999999872 11 12346666788 99999999999998863
No 46
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=99.32 E-value=5.7e-10 Score=109.97 Aligned_cols=222 Identities=17% Similarity=0.247 Sum_probs=148.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhcC-----ChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCC
Q 006253 233 VKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVRED-----EEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSD 307 (653)
Q Consensus 233 ~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (653)
+.++..+++++...++.+.+.+.+|++.++..+++.+... .+.+...+++|+.++++.... ..
T Consensus 110 ~kvK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~-~~----------- 177 (370)
T PF08506_consen 110 EKVKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHH-KN----------- 177 (370)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHH-HT-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhH-HH-----------
Confidence 4678889999999999999999999999999999887642 345667889998887764210 00
Q ss_pred CchhhHHHhhhhhhHH-HHHHHhhhccCC-------cc-------CCCccccHhhhHHHHHHHHHhhcCCCchhchHHHH
Q 006253 308 IPCFYFIKHALPVLVP-LLLETLLKQEED-------QD-------QDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFV 372 (653)
Q Consensus 308 ~~~~~~~~~~l~~l~~-~l~~~l~~~~ed-------~~-------~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l 372 (653)
.+. .++.+..|+. +++..|+..++| ++ |..|..+.|.+|.+.+..+++..++.+.+.+...+
T Consensus 178 --lf~-~~~~L~~Iie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i 254 (370)
T PF08506_consen 178 --LFE-NKPHLQQIIEKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYI 254 (370)
T ss_dssp --TT--SHHHHHHHHHHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HhC-CHHHHHHHHHHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 000 1334444433 233444433322 11 12244689999999999999999888888887877
Q ss_pred Hhhhc------CcchhhHHHHHHHHHHhhcCCCC-----------CcchHHHH-HHHHHHHHHhcCCCchHHHHHHHHHH
Q 006253 373 EENIT------KQEWRQREAATYAFGSILEGPSP-----------EKLVPLVN-IALNFMLTALMQDPNNHVKDTTAWTL 434 (653)
Q Consensus 373 ~~~l~------~~~~~~r~aal~~l~~i~~~~~~-----------~~~~~~l~-~l~~~ll~~l~~d~~~~vr~~a~~~l 434 (653)
+..++ +.+|+.+++|+..+++++..... -.+..++. .++|.+. .- .+.+|.+|..|++.+
T Consensus 255 ~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~-~~~~piLka~aik~~ 332 (370)
T PF08506_consen 255 QQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PD-VNSHPILKADAIKFL 332 (370)
T ss_dssp HHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--S-S-S-HHHHHHHHHHH
T ss_pred HHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-cc-CCCCcchHHHHHHHH
Confidence 77665 45799999999999998864310 02233333 3345444 22 468899999999999
Q ss_pred HHHHhhhccCCCCccccCccchHHHHHHHHHhccc-hhhHHHHHHHHH
Q 006253 435 GRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGAL 481 (653)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al 481 (653)
..|...++ ++.+..++|.++..|.+ +..|+..|+.++
T Consensus 333 ~~Fr~~l~----------~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 333 YTFRNQLP----------KEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHGGGS-----------HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHhhCC----------HHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 99998764 57889999999999996 677888888765
No 47
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=3.3e-08 Score=107.62 Aligned_cols=579 Identities=15% Similarity=0.159 Sum_probs=295.7
Q ss_pred HHHHHHHHhcCC--ChHHHHHHHHHHHHHHhhCcchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhh
Q 006253 4 EVTQILLNAQSV--DGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQR 81 (653)
Q Consensus 4 ~l~~ll~~~~s~--d~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~ 81 (653)
++...+....+| +++.|.+|.+.+.+++.. ++.+.....++.. +..+.+|++|..+|-+.++. .
T Consensus 11 ~lldavv~~~~~~~s~~~r~eA~~~l~~lke~--~~~~~~~~~iL~~-s~~~~~k~f~Lqlle~vik~-----------~ 76 (1041)
T KOG2020|consen 11 ELLDAVVVTLNPEGSNEERGEAQQILEELKEE--PDSWLQVYLILKL-STNPILKYFALQLLENVIKF-----------R 76 (1041)
T ss_pred HHHHhHHHHhCcccchHHHHHHHHHHHHHHhC--cchHHHHHHHHhc-cCCchhheeeHHHHHHHHHH-----------h
Confidence 455556666665 689999999999999998 7777777777876 56899999999999999985 5
Q ss_pred ccCCChHHHHHHHHHHHHhcCC----C-----ChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHH
Q 006253 82 WLSLDSSVKAQIKSFILKTLSS----P-----AHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATL 152 (653)
Q Consensus 82 ~~~l~~~~~~~i~~~ll~~l~~----~-----~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l 152 (653)
|..+|.+.+..+|.-.+..... + ...++.+++.++..|++.++| ..||++++.+.+.+. .++..++.++
T Consensus 77 W~~~~~~~r~glk~~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp-~~wp~~i~dl~~~s~-~s~~~~el~m 154 (1041)
T KOG2020|consen 77 WNSLPVEERVGLKNYVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKREWP-AIWPTFIPDLAQSSK-TSETVCELSM 154 (1041)
T ss_pred cccCCccccHHHHHHHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHH-hhcchhhhhHHHHhh-cCcccchHHH
Confidence 7788999999999888776431 2 246889999999999999999 599999999999877 4556677777
Q ss_pred HHHHHHHhhhc---ccccch---hhHhHHH--------HHHHhcccC---------------------------------
Q 006253 153 ETLGYICEEVS---SDAVEQ---DHVNKIL--------TAVVQGMNA--------------------------------- 185 (653)
Q Consensus 153 ~~l~~l~~~~~---~~~~~~---~~~~~l~--------~~l~~~l~~--------------------------------- 185 (653)
.++..+.+..- ...+.+ .+.+..+ ..+.....+
T Consensus 155 ~Il~lLsEdvf~~ss~~~~q~~~~il~~~~~~~f~~i~~l~~~~~~~a~~~~~~atl~tl~~fl~wip~~~I~~tn~l~~ 234 (1041)
T KOG2020|consen 155 IILLLLSEEVFDFSSSELTQQKIIILKNLLENEFQQIFTLCSYIKEKANSELLSATLETLLRFLEWIPLGYIFETNILEL 234 (1041)
T ss_pred HHHHHHHHHHhcccchHHHhhhHHHHHHHhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcccHHHHHHhhhHHH
Confidence 77777777641 111100 1111111 111110000
Q ss_pred ----CCCCHHHHHHHHHHHHHHHHhhhhhcCCh--hHHHHHH---HHHHhhhc---------CCcH-HHHHHHHHHHHHH
Q 006253 186 ----SESNNDVRLAATRALYNALGFAQANFSND--MERDYIM---RVVCEATL---------SPEV-KIRQAAFECLVAI 246 (653)
Q Consensus 186 ----~~~~~~vr~~a~~~l~~~~~~~~~~~~~~--~~~~~il---~~l~~~~~---------~~~~-~~~~~~~~~l~~l 246 (653)
--..++.|..|++||..++......++.. ......+ ..+...++ ..+. ...+..+..+..+
T Consensus 235 ~l~~~ln~~~~r~~al~CL~ei~s~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~dq~~fi~~l~~~l~~f 314 (1041)
T KOG2020|consen 235 LLNKFLNAPELRNNALSCLTELLSRKRSIYERKTVPMFNLTIYQLRSIPQDLDIPEVYSSLSDEDQDSFIEKLAQFLSLF 314 (1041)
T ss_pred HHHhccchHHHHHHHHHHHHHHHhccccchhHHhHHHHHHHHHHHHHhhhhhchhhhhhcccHhHHHHHHHHHHHHHHHH
Confidence 01135556666666666554321100000 0000011 11211111 1122 3334444555555
Q ss_pred HHHhHHhhHH---hHHHHHHHH---HHH-hhcCChhHHHHHHHhHHHhhHHHHhh---hhhcCCCCCC---CCCCch-hh
Q 006253 247 SSTYYEKLAP---YIQDIFNIT---AKA-VREDEEPVALQAIEFWSSVCDEEIDI---LEEYGGDFSG---DSDIPC-FY 312 (653)
Q Consensus 247 ~~~~~~~~~~---~l~~l~~~~---~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~---~~~~~~-~~ 312 (653)
.+.+...++. ..+...... +.. ..++.+-.+. +++.|..+....... .-..+....+ -++++. ++
T Consensus 315 ~~~~~~lle~~~~~~~~~~~~~~~li~i~~~~~se~~~~-~ld~W~~lv~~l~~~~~~ll~~s~~~~~~~~~~ri~~rk~ 393 (1041)
T KOG2020|consen 315 FEQHIALLESSLSQRPVLLEALLELILISTIEPSEIFKI-CLDYWNKLVADLYYNKPPLLQLSTTLPSISDYSRIDFRKS 393 (1041)
T ss_pred HHHHHHHHcCchhhhhHHHHHHHHHHHHhccCchhHHHH-HHHHHHHHHHhhhcccccccccccccccccchhccchHHH
Confidence 5554443332 011111111 112 2233444444 999999998875432 0000000000 001111 22
Q ss_pred HHHhhhhhhHHHHHHHhhhccCCc----c---------CCCccccHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCc
Q 006253 313 FIKHALPVLVPLLLETLLKQEEDQ----D---------QDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQ 379 (653)
Q Consensus 313 ~~~~~l~~l~~~l~~~l~~~~ed~----~---------~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~ 379 (653)
.....+.++--..+..|.++++-- + -|.+....-..-.+++..++...+...-..+.+.+...+.+.
T Consensus 394 ~y~~~~~~~r~l~l~~m~~Pe~vlive~~~~~~vre~~~~~~~~~ly~~~~e~l~~~~~L~~~~t~~~~~~kl~~~l~~~ 473 (1041)
T KOG2020|consen 394 IYQEFLSKLRLLRLERMAKPEEVLIVENEQGEIVREFMKDHDFITLYPVLRETLVYLLHLDVVDTEKIMTEKLAIQLDGD 473 (1041)
T ss_pred HHHHHHHHHHHHHHHHhcCchheeEEechHHHHHHHhccCcchhhhhHHHHHHHHHHHHhhhhhhhhhhhHhHHHHhhHH
Confidence 333444445555556666544310 0 001111122222233333222222211112222233333333
Q ss_pred c--hhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHh----cCCCchHHHHHHHHHHHHHHhhhccCCCCccccCc
Q 006253 380 E--WRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTAL----MQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQ 453 (653)
Q Consensus 380 ~--~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l----~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~ 453 (653)
. |.....-++++++++.....+....++..++..++... .+|.. +..++++.-..+. .-.....+.
T Consensus 474 ~~~~~~ln~l~~ai~sisg~~~e~~e~k~~~~v~~d~l~l~E~~~~kdn~-------avi~~Ni~~vv~q-~p~Fl~~h~ 545 (1041)
T KOG2020|consen 474 EWSLHNLNRLCWAIGSISGRMLEDMEKKFFVAVIRDLLNLCERKRGKDNK-------AVIASNIMYVVGQ-YPRFLKAHW 545 (1041)
T ss_pred HHhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCch-------hHHHHHHHHHhcc-cchHHHHHH
Confidence 2 45556667888877764433333444444433333333 12322 3344444443331 000001224
Q ss_pred cchHHHHHHHHHhccc-hhhHHHHHHHHHHHHHhcccCC--CCCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHH
Q 006253 454 GNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDA--ISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYET 530 (653)
Q Consensus 454 ~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~~~~~~--~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~ 530 (653)
.+++.+...+.+.++. ...|+..+|..+..++..+..+ ........||...+...+...+.+.+ ...+..-+++
T Consensus 546 ~~Lkt~~~~L~efmhe~h~gvqdmacd~F~~ii~~~~~~fv~~~~~e~~~fv~~~~~~l~~i~~~l~---~~q~~~~~~a 622 (1041)
T KOG2020|consen 546 KFLKTVVHKLFEFMHETHEGVQDMACDTFIKIIQKCKRHFVITQLGETKPFVGELLLNLTAITEDLQ---PQQRHTFYEA 622 (1041)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHhhhHHHHHHHHHhhhhhheeecccccccchHHHhhcccchhcCch---HHHHHHHHHH
Confidence 4555566677777664 5678889998888777665431 12345567888888888888887765 3445578888
Q ss_pred HHHHHHhcccc--cHHHHHHHHHHHHHHHHHHHHhhcCChh---HHHhHHHHHHHHHhHHHHHHHHhCCCcchhhHhhHh
Q 006253 531 LNEVVRCSTDE--TAPMVMQLVPLIMMELHQTLEAQKLSSD---EREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQY 605 (653)
Q Consensus 531 l~~l~~~~~~~--~~~~~~~l~~~l~~~l~~~~~~~~~~~~---~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~ 605 (653)
++.++...... ...+....+-.--..|.+.+..+-.+.+ +.+....+.. .+.+...+++++|.. |.+-
T Consensus 623 l~~~V~~~~~~~~~~~~~~~~~vl~~~~~~nii~~~~~~~~~l~~~~~v~s~~~-i~~~~~~~~~sl~~~------f~~~ 695 (1041)
T KOG2020|consen 623 LGLMVSAEIDPAKAERLQSKLMVLPNRAWINIILQARCNDEILKLLETVKSLLN-ILKTNSRALTSLGST------FVPQ 695 (1041)
T ss_pred HHHHHHHhCCHhhHHHHHhcccccchhhhcchhhcCcccHHhhcchHHHHHHHH-HHHhHHHHHHhcCcc------cccc
Confidence 88444333222 1223333222222233332221111111 1122223343 677888888888887 5554
Q ss_pred HHHHHHHHHHHH
Q 006253 606 ADQMMGLFLRVF 617 (653)
Q Consensus 606 ~~~i~~~l~~~l 617 (653)
...++....+.+
T Consensus 696 ~~~~~~d~~~l~ 707 (1041)
T KOG2020|consen 696 LGKIYLDMLQLY 707 (1041)
T ss_pred cccccHHHHHHH
Confidence 444444433333
No 48
>PRK09687 putative lyase; Provisional
Probab=99.29 E-value=8.2e-10 Score=105.21 Aligned_cols=250 Identities=13% Similarity=0.072 Sum_probs=176.2
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCC
Q 006253 134 GALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSN 213 (653)
Q Consensus 134 ~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~ 213 (653)
+.|...+.+++..+|..+...|..+- . ..+++.+...+. ++++.+|..|+.+|+.+-.- .
T Consensus 26 ~~L~~~L~d~d~~vR~~A~~aL~~~~-----~-------~~~~~~l~~ll~--~~d~~vR~~A~~aLg~lg~~------~ 85 (280)
T PRK09687 26 DELFRLLDDHNSLKRISSIRVLQLRG-----G-------QDVFRLAIELCS--SKNPIERDIGADILSQLGMA------K 85 (280)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcC-----c-------chHHHHHHHHHh--CCCHHHHHHHHHHHHhcCCC------c
Confidence 56677778899999999999987531 1 224444555556 78899999999999984210 0
Q ss_pred hhHHHHHHHHHHhh-hcCCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHH
Q 006253 214 DMERDYIMRVVCEA-TLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEI 292 (653)
Q Consensus 214 ~~~~~~il~~l~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 292 (653)
......++.|... .+++++.+|..++..|+.+..... .+.+..++.+.....+.++.||..+...++.+.+.
T Consensus 86 -~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~----~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~-- 158 (280)
T PRK09687 86 -RCQDNVFNILNNLALEDKSACVRASAINATGHRCKKNP----LYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDE-- 158 (280)
T ss_pred -cchHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccc----ccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCH--
Confidence 0013566777655 578899999999999998743221 12344555566677788999999998777655431
Q ss_pred hhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCCchhchHHHH
Q 006253 293 DILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFV 372 (653)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l 372 (653)
..++.|+..+. +.+|.+|..|..+|+.+. .-.|...+.+
T Consensus 159 ---------------------------~ai~~L~~~L~---------d~~~~VR~~A~~aLg~~~-----~~~~~~~~~L 197 (280)
T PRK09687 159 ---------------------------AAIPLLINLLK---------DPNGDVRNWAAFALNSNK-----YDNPDIREAF 197 (280)
T ss_pred ---------------------------HHHHHHHHHhc---------CCCHHHHHHHHHHHhcCC-----CCCHHHHHHH
Confidence 23455655554 123679999999999871 1234566777
Q ss_pred HhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccC
Q 006253 373 EENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIIN 452 (653)
Q Consensus 373 ~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 452 (653)
...+.|.+|.+|..|+.+||.+... ..+|.|+..+ +++. +|..++.+||++...
T Consensus 198 ~~~L~D~~~~VR~~A~~aLg~~~~~-----------~av~~Li~~L-~~~~--~~~~a~~ALg~ig~~------------ 251 (280)
T PRK09687 198 VAMLQDKNEEIRIEAIIGLALRKDK-----------RVLSVLIKEL-KKGT--VGDLIIEAAGELGDK------------ 251 (280)
T ss_pred HHHhcCCChHHHHHHHHHHHccCCh-----------hHHHHHHHHH-cCCc--hHHHHHHHHHhcCCH------------
Confidence 7788999999999999999986532 3578888889 7766 677888999988642
Q ss_pred ccchHHHHHHHHHhcc-c-hhhHHHHHHHHHH
Q 006253 453 QGNCQQIISVLLQSMK-D-VPNVAEKACGALY 482 (653)
Q Consensus 453 ~~~~~~il~~l~~~l~-d-~~~v~~~a~~al~ 482 (653)
..+|.|.+.+. + +..|+..|..++.
T Consensus 252 -----~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 252 -----TLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred -----hHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 45777777775 3 6888888877765
No 49
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.29 E-value=2.8e-08 Score=103.68 Aligned_cols=425 Identities=17% Similarity=0.196 Sum_probs=254.9
Q ss_pred ChhHHHHHHHHhcCCChHHHHHHHHHHHH-HHhhC-cchHH-HHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHH
Q 006253 1 MSAEVTQILLNAQSVDGTVRKQAEESLKQ-YQEQN-LPGFL-LSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFE 77 (653)
Q Consensus 1 m~~~l~~ll~~~~s~d~~~r~~A~~~L~~-~~~~~-~~~~~-~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~ 77 (653)
||+.+...++++...+ .+.++...+.. +...+ ...+. ..++..+.+. +.+.-..+.-+|++.+...
T Consensus 1 ~~~~~~~~l~~l~~~~--~~~~~L~~l~~~~~~~~~l~~~~~~~lf~~L~~~--~~e~v~~~~~iL~~~l~~~------- 69 (503)
T PF10508_consen 1 MEEWINELLEELSSKA--ERLEALPELKTELSSSPFLERLPEPVLFDCLNTS--NREQVELICDILKRLLSAL------- 69 (503)
T ss_pred CchHHHHHHHHHhccc--chHHHHHHHHHHHhhhhHHHhchHHHHHHHHhhc--ChHHHHHHHHHHHHHHhcc-------
Confidence 8889999999998773 44444444442 22221 11221 1255666652 3333356667788877632
Q ss_pred hhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCC---CCCchHHHHHHHhhcCCChhHHHHHHHH
Q 006253 78 LVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPH---KQWPELIGALLSNIHQLPPHTKQATLET 154 (653)
Q Consensus 78 ~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~---~~~~~l~~~l~~~l~~~~~~~~~~~l~~ 154 (653)
-+......+++.+..+|.++++.||..++..++.+++..... -.-+++++.+..++.+++..+...|+.+
T Consensus 70 -------~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~ 142 (503)
T PF10508_consen 70 -------SPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKA 142 (503)
T ss_pred -------CHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHH
Confidence 122336778889999999999999999999999988653110 1337899999999999999999999999
Q ss_pred HHHHHhhhcccccchhh-HhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcH
Q 006253 155 LGYICEEVSSDAVEQDH-VNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEV 233 (653)
Q Consensus 155 l~~l~~~~~~~~~~~~~-~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~ 233 (653)
|..++..- ..+ ... -..+.+.+...+. ..+..+|..+..++..+...-++.+..- ....+++.+...+.++|.
T Consensus 143 L~~l~~~~--~~~-~~l~~~~~~~~L~~l~~--~~~~~vR~Rv~el~v~i~~~S~~~~~~~-~~sgll~~ll~eL~~dDi 216 (503)
T PF10508_consen 143 LKKLASHP--EGL-EQLFDSNLLSKLKSLMS--QSSDIVRCRVYELLVEIASHSPEAAEAV-VNSGLLDLLLKELDSDDI 216 (503)
T ss_pred HHHHhCCc--hhH-HHHhCcchHHHHHHHHh--ccCHHHHHHHHHHHHHHHhcCHHHHHHH-HhccHHHHHHHHhcCccH
Confidence 99998753 222 111 1223566666666 4577888888888887765433222110 002377777777777888
Q ss_pred HHHHHHHHHHHHHHHHhHHhhHHhHH--HHHHHHHHHhhcCChhHHH------HHHHhHHHhhHHHHhhhhhcCCCCCCC
Q 006253 234 KIRQAAFECLVAISSTYYEKLAPYIQ--DIFNITAKAVREDEEPVAL------QAIEFWSSVCDEEIDILEEYGGDFSGD 305 (653)
Q Consensus 234 ~~~~~~~~~l~~l~~~~~~~~~~~l~--~l~~~~~~~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (653)
-++.++++++..++.. ++. ..|+. .+++.+...+.+.+.+-+. ..+.|.+.++...
T Consensus 217 Lvqlnalell~~La~~-~~g-~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~-------------- 280 (503)
T PF10508_consen 217 LVQLNALELLSELAET-PHG-LQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVS-------------- 280 (503)
T ss_pred HHHHHHHHHHHHHHcC-hhH-HHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcC--------------
Confidence 8999999999999993 332 35554 4777777776643222121 2234444444310
Q ss_pred CCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhc-CCCch--------hchHHHHHhhh
Q 006253 306 SDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTV-GDDIV--------PLVMPFVEENI 376 (653)
Q Consensus 306 ~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~-~~~~~--------~~l~~~l~~~l 376 (653)
+.-+...++.++..++..+.. .+.+.+..|.++++.++... |...+ ..++..+-...
T Consensus 281 -----~~~v~~~~p~~~~~l~~~~~s---------~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~ 346 (503)
T PF10508_consen 281 -----PQEVLELYPAFLERLFSMLES---------QDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAI 346 (503)
T ss_pred -----hHHHHHHHHHHHHHHHHHhCC---------CChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHh
Confidence 011222234444444433221 11356789999999998765 43333 34455555556
Q ss_pred cCcchhhHHHHHHHHHHhhcCCCC---CcchHHHHHH--------HH-HHHHHhcCCCchHHHHHHHHHHHHHHhhhccC
Q 006253 377 TKQEWRQREAATYAFGSILEGPSP---EKLVPLVNIA--------LN-FMLTALMQDPNNHVKDTTAWTLGRMFEFLHGS 444 (653)
Q Consensus 377 ~~~~~~~r~aal~~l~~i~~~~~~---~~~~~~l~~l--------~~-~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~ 444 (653)
.+.....|-.++.+++.+...... +.+....... .. .+...+ +.|.|.+|.++...+..++..--.
T Consensus 347 ~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~-~qPF~elr~a~~~~l~~l~~~~Wg- 424 (503)
T PF10508_consen 347 KSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLL-KQPFPELRCAAYRLLQALAAQPWG- 424 (503)
T ss_pred cCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHh-cCCchHHHHHHHHHHHHHhcCHHH-
Confidence 666667899999999999654321 1111111111 11 556667 888999999999999988863210
Q ss_pred CCCccccCccchHHHHHHHHHhccc-hhhHHHHHHHHHHHHHh
Q 006253 445 TLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQ 486 (653)
Q Consensus 445 ~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~ 486 (653)
...-...+.+++.++..-.+ ++..++.-...+..+.+
T Consensus 425 -----~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~ 462 (503)
T PF10508_consen 425 -----QREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAK 462 (503)
T ss_pred -----HHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHh
Confidence 00111223445444443332 34454444444555554
No 50
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=1.7e-07 Score=94.88 Aligned_cols=195 Identities=10% Similarity=0.141 Sum_probs=132.3
Q ss_pred CChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcc
Q 006253 85 LDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSS 164 (653)
Q Consensus 85 l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~ 164 (653)
++++....+-+-++..|++.-+.+|+.|..++-.++-.+ |+ ..-..+|.|.+.+.++||.+.-+|..+++++++.- |
T Consensus 137 vTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkY-Pe-Alr~~FprL~EkLeDpDp~V~SAAV~VICELArKn-P 213 (877)
T KOG1059|consen 137 VTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKY-PE-ALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKN-P 213 (877)
T ss_pred cCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhh-hH-hHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhC-C
Confidence 456777778889999999999999999999999998775 63 66678899999999999999999999999999876 4
Q ss_pred cc-cc-hhhH-------------hHHHHHHHhcccCCCCCHHHHH-------------HHHHHHHHHHHhhh-h-----h
Q 006253 165 DA-VE-QDHV-------------NKILTAVVQGMNASESNNDVRL-------------AATRALYNALGFAQ-A-----N 210 (653)
Q Consensus 165 ~~-~~-~~~~-------------~~l~~~l~~~l~~~~~~~~vr~-------------~a~~~l~~~~~~~~-~-----~ 210 (653)
+. +. .+.+ -.++ .++..|. .-.|.+.+ .|...++.++..+- . .
T Consensus 214 knyL~LAP~ffkllttSsNNWmLIKii-KLF~aLt--plEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~ 290 (877)
T KOG1059|consen 214 QNYLQLAPLFYKLLVTSSNNWVLIKLL-KLFAALT--PLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGM 290 (877)
T ss_pred cccccccHHHHHHHhccCCCeehHHHH-HHHhhcc--ccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCC
Confidence 32 20 0100 1111 1111222 12233322 24444444443221 1 1
Q ss_pred cCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhH
Q 006253 211 FSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCD 289 (653)
Q Consensus 211 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 289 (653)
.+........++-|-.++.+.|+.++--.+-++..++..++..+.. --.++++++.|.|+.+|..|++++..+.+
T Consensus 291 ~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa----~kdlIlrcL~DkD~SIRlrALdLl~gmVs 365 (877)
T KOG1059|consen 291 SDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA----HKDLILRCLDDKDESIRLRALDLLYGMVS 365 (877)
T ss_pred CCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH----hHHHHHHHhccCCchhHHHHHHHHHHHhh
Confidence 1111122334555666677888888888889999999888865443 34456788999999999999999887775
No 51
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=5e-07 Score=95.83 Aligned_cols=507 Identities=14% Similarity=0.136 Sum_probs=282.5
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhccCCChHHHHHHHHHHHHhcCCC-ChHHHHHHHHHH
Q 006253 38 FLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSP-AHDARSTASQVV 116 (653)
Q Consensus 38 ~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~-~~~vr~~~~~~l 116 (653)
++..|++-+. +.+..+|..|+.-+++...+ +|.+..+++....+..++-- ++...+.+|.++
T Consensus 342 vie~Lls~l~--d~dt~VrWSaAKg~grvt~r---------------lp~~Lad~vi~svid~~~p~e~~~aWHgacLaL 404 (1133)
T KOG1943|consen 342 VIEHLLSALS--DTDTVVRWSAAKGLGRVTSR---------------LPPELADQVIGSVIDLFNPAEDDSAWHGACLAL 404 (1133)
T ss_pred HHHHHHHhcc--CCcchhhHHHHHHHHHHHcc---------------CcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHH
Confidence 4444445554 35899999999999997754 55666677777777755543 468888999999
Q ss_pred HHHHhhh--cCCCCCchHHHHHHHhhcC--------CChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHh-cccC
Q 006253 117 AKVAGIE--LPHKQWPELIGALLSNIHQ--------LPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQ-GMNA 185 (653)
Q Consensus 117 ~~ia~~~--~~~~~~~~l~~~l~~~l~~--------~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~-~l~~ 185 (653)
+.+|..- .| ...++++|.+...+.- ....+|.+|+.++..+...++|.-+ .+.+..+.+.++. .+-
T Consensus 405 AELA~rGlLlp-s~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l-~p~l~~L~s~LL~~AlF- 481 (1133)
T KOG1943|consen 405 AELALRGLLLP-SLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDL-KPVLQSLASALLIVALF- 481 (1133)
T ss_pred HHHHhcCCcch-HHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhh-hHHHHHHHHHHHHHHhc-
Confidence 9999753 24 4667899999887743 2457999999999999998877777 6666777776553 444
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHH
Q 006253 186 SESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNIT 265 (653)
Q Consensus 186 ~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~ 265 (653)
|+...+|.+|.-++...+.-..+..-. -.++.. .+.-....|.+++..+...+..++.+..+ ++..+
T Consensus 482 -DrevncRRAAsAAlqE~VGR~~n~p~G----i~Lis~----~dy~sV~~rsNcy~~l~~~ia~~~~y~~~----~f~~L 548 (1133)
T KOG1943|consen 482 -DREVNCRRAASAALQENVGRQGNFPHG----ISLIST----IDYFSVTNRSNCYLDLCVSIAEFSGYREP----VFNHL 548 (1133)
T ss_pred -CchhhHhHHHHHHHHHHhccCCCCCCc----hhhhhh----cchhhhhhhhhHHHHHhHHHHhhhhHHHH----HHHHH
Confidence 888999999999988766432211010 111111 11122344566666676666665544444 44433
Q ss_pred HH-HhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCcccc
Q 006253 266 AK-AVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWN 344 (653)
Q Consensus 266 ~~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~ 344 (653)
+. .+.+=|..+|..+...+..+...++. .....+++++++.... . +-.
T Consensus 549 ~t~Kv~HWd~~irelaa~aL~~Ls~~~pk------------------~~a~~~L~~lld~~ls----~---------~~~ 597 (1133)
T KOG1943|consen 549 LTKKVCHWDVKIRELAAYALHKLSLTEPK------------------YLADYVLPPLLDSTLS----K---------DAS 597 (1133)
T ss_pred HhcccccccHHHHHHHHHHHHHHHHhhHH------------------hhcccchhhhhhhhcC----C---------ChH
Confidence 33 25566788888888888887765432 1222333333332211 0 012
Q ss_pred HhhhHHHHHHHHHhhcC--CCchh-----------chHHHHHhhhcCcc--hhhHHHHHHHHHHhhcCCCCCcchHHH-H
Q 006253 345 IAMAGGTCLGLVARTVG--DDIVP-----------LVMPFVEENITKQE--WRQREAATYAFGSILEGPSPEKLVPLV-N 408 (653)
Q Consensus 345 ~r~~a~~~L~~l~~~~~--~~~~~-----------~l~~~l~~~l~~~~--~~~r~aal~~l~~i~~~~~~~~~~~~l-~ 408 (653)
.|.....+.+.+.-.+. +.+.+ .+++.+........ -..|.+.+..+-.+.... ......++ .
T Consensus 598 ~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~-~~~~~~~v~e 676 (1133)
T KOG1943|consen 598 MRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSK-DRLFQDFVIE 676 (1133)
T ss_pred HhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhcc-chhHHHHHHH
Confidence 23333333333322211 01111 11111111111110 233444444444444432 11111222 2
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc--hhhHHHHHHHHHHHHHh
Q 006253 409 IALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD--VPNVAEKACGALYFLAQ 486 (653)
Q Consensus 409 ~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d--~~~v~~~a~~al~~~~~ 486 (653)
+.-..+...+ .+++ .+|.+|.+++++++..+... ....-.+++...+..+.+ +.++|.-...+++.+..
T Consensus 677 ~~~~ll~~~l-~~~n-~i~~~av~av~~l~s~y~~~-------d~~~~~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~ 747 (1133)
T KOG1943|consen 677 NWQMLLAQNL-TLPN-QIRDAAVSAVSDLVSTYVKA-------DEGEEAPLITRYLSRLTKCSEERIRRGLILALGVLPS 747 (1133)
T ss_pred HHHHHHHHhh-cchH-HHHHHHHHHHHHHHHHHHhc-------CchhhhHHHHHHHHHhcCchHHHHHHHHHHHHccCcH
Confidence 2333344444 5666 89999999999999876531 112222576767776664 35565555555554432
Q ss_pred cccCCCCCCCCCc-hhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHHHHHHHhh
Q 006253 487 GFEDAISPSSPLT-PFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTD-ETAPMVMQLVPLIMMELHQTLEAQ 564 (653)
Q Consensus 487 ~~~~~~~~~~~l~-~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~ 564 (653)
. .+. ++.+.+...++......- ...-|...+.++..++...+. .+..-..+++..+++.+++...+
T Consensus 748 ~---------~i~~~~q~~lc~~~l~~~p~d~--~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd- 815 (1133)
T KOG1943|consen 748 E---------LIHRHLQEKLCKLVLELLPSDA--WAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTD- 815 (1133)
T ss_pred H---------hhchHHHHHHHHHHhccCcccc--cHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcccc-
Confidence 2 122 233444444444333221 245677788888888877772 23445666666777777775321
Q ss_pred cCChhHHHhHHHHHHHHHhHHHHHHHHhCCCcchhhHhhH-hHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHH
Q 006253 565 KLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQ-YADQMMGLFLRVFAIRSATAHEEAMLAIGALAYA 638 (653)
Q Consensus 565 ~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~-~~~~i~~~l~~~l~~~~~~~~e~~~~~~~~l~~~ 638 (653)
+..|-. .-+|..++..+..+.-.+.+.. .+.+ .+..++..+++---.+-+.+|+.+..++..+...
T Consensus 816 --~rGDVG--swVReaAm~al~~~~~~l~~p~----~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi~~~ 882 (1133)
T KOG1943|consen 816 --SRGDVG--SWVREAAMKALSSLLDTLSSPK----LLDEDSINRIIRYFVQQAVEKIDRLRELAASALNQIVVH 882 (1133)
T ss_pred --cCccHH--HHHHHHHHHHHHhhhhhhcCcc----cccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhceeec
Confidence 111222 2377777877777776665310 0333 3444555444444444445678777777776555
No 52
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=2.6e-07 Score=97.93 Aligned_cols=475 Identities=12% Similarity=0.096 Sum_probs=263.8
Q ss_pred hHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhhccc
Q 006253 87 SSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQ-LPPHTKQATLETLGYICEEVSSD 165 (653)
Q Consensus 87 ~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~-~~~~~~~~~l~~l~~l~~~~~~~ 165 (653)
++..+.+.+.|+..+++.+..||-.+|+.++.++... |...-.+.+..++..+.- +++....+++.+|..++.. .
T Consensus 336 ~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rl-p~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~r---G 411 (1133)
T KOG1943|consen 336 PEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRL-PPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALR---G 411 (1133)
T ss_pred HHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccC-cHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhc---C
Confidence 3678899999999999999999999999999999876 411123344444443322 2467788999999988763 2
Q ss_pred ccchhhHhHHHHHHHhcccCC------CCCHHHHHHHHHHHHHHHHhhhhh-cCChhHHHHHHHHH-HhhhcCCcHHHHH
Q 006253 166 AVEQDHVNKILTAVVQGMNAS------ESNNDVRLAATRALYNALGFAQAN-FSNDMERDYIMRVV-CEATLSPEVKIRQ 237 (653)
Q Consensus 166 ~~~~~~~~~l~~~l~~~l~~~------~~~~~vr~~a~~~l~~~~~~~~~~-~~~~~~~~~il~~l-~~~~~~~~~~~~~ 237 (653)
.+-...+..++|.+..++.=. .....||.+|+..+-.+....+.. .. .+...+...+ ...+-|++-..|.
T Consensus 412 lLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~--p~l~~L~s~LL~~AlFDrevncRR 489 (1133)
T KOG1943|consen 412 LLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLK--PVLQSLASALLIVALFDREVNCRR 489 (1133)
T ss_pred CcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhh--HHHHHHHHHHHHHHhcCchhhHhH
Confidence 221345678888888776520 235578999887777665433221 11 1222333333 3344578889999
Q ss_pred HHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhh
Q 006253 238 AAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHA 317 (653)
Q Consensus 238 ~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (653)
++.-++.+.+...+.. |+=-.++.. ...-.-..|..+ |..++.... ....|..++
T Consensus 490 AAsAAlqE~VGR~~n~--p~Gi~Lis~----~dy~sV~~rsNc---y~~l~~~ia----------------~~~~y~~~~ 544 (1133)
T KOG1943|consen 490 AASAALQENVGRQGNF--PHGISLIST----IDYFSVTNRSNC---YLDLCVSIA----------------EFSGYREPV 544 (1133)
T ss_pred HHHHHHHHHhccCCCC--CCchhhhhh----cchhhhhhhhhH---HHHHhHHHH----------------hhhhHHHHH
Confidence 9999998877764432 111111110 000001112222 233332110 011345544
Q ss_pred hhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcC
Q 006253 318 LPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEG 397 (653)
Q Consensus 318 l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~ 397 (653)
++.++ .+++++++. .+|..|+.+|..++...++.+....++-+.....+.+...|++...+.|.+..+
T Consensus 545 f~~L~---t~Kv~HWd~---------~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~ 612 (1133)
T KOG1943|consen 545 FNHLL---TKKVCHWDV---------KIRELAAYALHKLSLTEPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGA 612 (1133)
T ss_pred HHHHH---hcccccccH---------HHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHH
Confidence 44322 233444321 578899999999998887766655555555566677888999999999998876
Q ss_pred CCCCc--chHH-------HHHHHHHHHHH-hcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhc
Q 006253 398 PSPEK--LVPL-------VNIALNFMLTA-LMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSM 467 (653)
Q Consensus 398 ~~~~~--~~~~-------l~~l~~~ll~~-l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l 467 (653)
+..-. +... +.++++.+... +........|.+.+..+.+++..-.. ..........--.+.+.+
T Consensus 613 ~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~------~~~~~v~e~~~~ll~~~l 686 (1133)
T KOG1943|consen 613 LRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDR------LFQDFVIENWQMLLAQNL 686 (1133)
T ss_pred hhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccch------hHHHHHHHHHHHHHHHhh
Confidence 42111 1101 11223332221 10111146777777777777654321 111122222333333433
Q ss_pred cchhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHH-HHHHHHHHhccccccchhchHHHHHHHHHHHHHhccccc--HH
Q 006253 468 KDVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQ-EIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDET--AP 544 (653)
Q Consensus 468 ~d~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~-~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~--~~ 544 (653)
.+...+|..|.++++.++...-. ..++.. .+++..+..+.+.. +...|.-..-+++.+ +... .+
T Consensus 687 ~~~n~i~~~av~av~~l~s~y~~-------~d~~~~~~li~~~ls~~~~~~--~~~~r~g~~lal~~l----p~~~i~~~ 753 (1133)
T KOG1943|consen 687 TLPNQIRDAAVSAVSDLVSTYVK-------ADEGEEAPLITRYLSRLTKCS--EERIRRGLILALGVL----PSELIHRH 753 (1133)
T ss_pred cchHHHHHHHHHHHHHHHHHHHh-------cCchhhhHHHHHHHHHhcCch--HHHHHHHHHHHHccC----cHHhhchH
Confidence 33227889999999999876432 111111 46666666666554 233443333333333 2111 12
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHhHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhcc----
Q 006253 545 MVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIR---- 620 (653)
Q Consensus 545 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~---- 620 (653)
+-+.+...++.. .++|. +..-|...+..+..++..++... +.....++++.+++.+.+.
T Consensus 754 ~q~~lc~~~l~~----------~p~d~--~a~aR~~~V~al~~v~~~~~~~~-----~~~~~~k~~e~LL~~lddYttd~ 816 (1133)
T KOG1943|consen 754 LQEKLCKLVLEL----------LPSDA--WAEARQQNVKALAHVCKTVTSLL-----FSESIEKFRETLLNALDDYTTDS 816 (1133)
T ss_pred HHHHHHHHHhcc----------Ccccc--cHHHHHHHHHHHHHHHHHHHHhh-----ccccHHHHHHHHHHHHhhccccc
Confidence 222221111110 12221 23334456666777777777432 6667788888888888872
Q ss_pred ----CcchhhhHHHHHHHHHHHhc
Q 006253 621 ----SATAHEEAMLAIGALAYATG 640 (653)
Q Consensus 621 ----~~~~~e~~~~~~~~l~~~~~ 640 (653)
.+-+|+.||.++..+..-+.
T Consensus 817 rGDVGswVReaAm~al~~~~~~l~ 840 (1133)
T KOG1943|consen 817 RGDVGSWVREAAMKALSSLLDTLS 840 (1133)
T ss_pred CccHHHHHHHHHHHHHHhhhhhhc
Confidence 12389999999988766554
No 53
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=8.5e-07 Score=90.83 Aligned_cols=445 Identities=15% Similarity=0.124 Sum_probs=253.1
Q ss_pred HHHHhcCCCC-hHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhHhH
Q 006253 96 FILKTLSSPA-HDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNK 174 (653)
Q Consensus 96 ~ll~~l~~~~-~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~ 174 (653)
.|.+.|.+.. ...+.+.-.+++.||+.. .-.+++|.+.....+.+.++++-...-|-..+++- |+.- --
T Consensus 39 dL~~lLdSnkd~~KleAmKRIia~iA~G~----dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeq-pdLA-----LL 108 (968)
T KOG1060|consen 39 DLKQLLDSNKDSLKLEAMKRIIALIAKGK----DVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQ-PDLA-----LL 108 (968)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhcCC----cHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcC-CCce-----ee
Confidence 3556666654 566777777888888643 57899999999999999998877765555555543 3311 00
Q ss_pred HHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhh
Q 006253 175 ILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKL 254 (653)
Q Consensus 175 l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 254 (653)
=+..+-..|. |+++.+|..|+.+|..+=- .....-++-.+-+...|+.+-+|+.+..++.++-+..++.
T Consensus 109 SIntfQk~L~--DpN~LiRasALRvlSsIRv--------p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~- 177 (968)
T KOG1060|consen 109 SINTFQKALK--DPNQLIRASALRVLSSIRV--------PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQ- 177 (968)
T ss_pred eHHHHHhhhc--CCcHHHHHHHHHHHHhcch--------hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhh-
Confidence 1334556778 8999999999999887311 1111234445566778899999999999998876655432
Q ss_pred HHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhh--------hhHHHHH
Q 006253 255 APYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALP--------VLVPLLL 326 (653)
Q Consensus 255 ~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--------~l~~~l~ 326 (653)
-.+++..+-..+.|.++-|.-.|+-.+..+|.+..++.-++ .+.+++ ++. -++..|.
T Consensus 178 ---k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHkn-----------yrklC~-ll~dvdeWgQvvlI~mL~ 242 (968)
T KOG1060|consen 178 ---KDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKN-----------YRKLCR-LLPDVDEWGQVVLINMLT 242 (968)
T ss_pred ---HHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHH-----------HHHHHh-hccchhhhhHHHHHHHHH
Confidence 23566666677788888888777777777776654433220 001110 000 0122222
Q ss_pred HHhhhc--c---CCccCCCccccHhhhHHHHHHHHHhhcC---CCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCC
Q 006253 327 ETLLKQ--E---EDQDQDEGAWNIAMAGGTCLGLVARTVG---DDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGP 398 (653)
Q Consensus 327 ~~l~~~--~---ed~~~d~~~~~~r~~a~~~L~~l~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~ 398 (653)
.+.+.. + .|++-+++ .|..-...... -...| +.=+..+++.....+.+.++.+--|++.++..++-.
T Consensus 243 RYAR~~l~~P~~~~~~~e~n---~~~~~~~~~~~-~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~- 317 (968)
T KOG1060|consen 243 RYARHQLPDPTVVDSSLEDN---GRSCNLKDKYN-EIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPK- 317 (968)
T ss_pred HHHHhcCCCccccccccccC---ccccccccccc-ccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCH-
Confidence 221110 0 11100000 00000000000 00001 111223444444566777776666666666655532
Q ss_pred CCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCcc-------------------------ccCc
Q 006253 399 SPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETP-------------------------IINQ 453 (653)
Q Consensus 399 ~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~-------------------------~~~~ 453 (653)
. ....+...++..| . +++.+++..+..+..++..-+.- .. | ....
T Consensus 318 --~----~~~~i~kaLvrLL-r-s~~~vqyvvL~nIa~~s~~~~~l-F~-P~lKsFfv~ssDp~~vk~lKleiLs~La~e 387 (968)
T KOG1060|consen 318 --N----QVTKIAKALVRLL-R-SNREVQYVVLQNIATISIKRPTL-FE-PHLKSFFVRSSDPTQVKILKLEILSNLANE 387 (968)
T ss_pred --H----HHHHHHHHHHHHH-h-cCCcchhhhHHHHHHHHhcchhh-hh-hhhhceEeecCCHHHHHHHHHHHHHHHhhh
Confidence 1 1334556666655 4 45677777777777776533210 00 0 0123
Q ss_pred cchHHHHHHHHHhccc-hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHH
Q 006253 454 GNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLN 532 (653)
Q Consensus 454 ~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~ 532 (653)
..+..+++.+...+.+ +.++...|..||++.... +...-+..+.+|+.++.+.+ ..+...+..+|.
T Consensus 388 sni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~----------~~sv~~tCL~gLv~Llsshd---e~Vv~eaV~vIk 454 (968)
T KOG1060|consen 388 SNISEILRELQTYIKSSDRSFAAAAVKAIGRCASR----------IGSVTDTCLNGLVQLLSSHD---ELVVAEAVVVIK 454 (968)
T ss_pred ccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHh----------hCchhhHHHHHHHHHHhccc---chhHHHHHHHHH
Confidence 3455666666666665 346778888888888765 33456778888888888775 456678888899
Q ss_pred HHHHhcccccHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHhHHHHHHHHhCCCcchhhHhhHhHHHHHHH
Q 006253 533 EVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGL 612 (653)
Q Consensus 533 ~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~ 612 (653)
.+++..+..-..++.+ +.+.++.. . ...-|+.++..+|..+..+..- ++.++..
T Consensus 455 ~Llq~~p~~h~~ii~~----La~lldti-~-----------vp~ARA~IiWLige~~e~vpri----------~PDVLR~ 508 (968)
T KOG1060|consen 455 RLLQKDPAEHLEILFQ----LARLLDTI-L-----------VPAARAGIIWLIGEYCEIVPRI----------APDVLRK 508 (968)
T ss_pred HHHhhChHHHHHHHHH----HHHHhhhh-h-----------hhhhhceeeeeehhhhhhcchh----------chHHHHH
Confidence 9988877543333222 33333321 1 1133555666666666654333 6667777
Q ss_pred HHHHHhccCcchhhhHHH
Q 006253 613 FLRVFAIRSATAHEEAML 630 (653)
Q Consensus 613 l~~~l~~~~~~~~e~~~~ 630 (653)
+.+.+.+...+++-..+.
T Consensus 509 laksFs~E~~evKlQILn 526 (968)
T KOG1060|consen 509 LAKSFSDEGDEVKLQILN 526 (968)
T ss_pred HHHhhccccchhhHHHHH
Confidence 777777665555544443
No 54
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.10 E-value=2.8e-08 Score=105.81 Aligned_cols=316 Identities=16% Similarity=0.183 Sum_probs=207.7
Q ss_pred HHHHHHHhhcCC-ChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhh
Q 006253 132 LIGALLSNIHQL-PPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQAN 210 (653)
Q Consensus 132 l~~~l~~~l~~~-~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~ 210 (653)
+++.+..+++.- ....+..|+..|..+....+ + ...++.++|-++.++. |+.+.||..|+.+|..++..+.+.
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~-d---e~~LDRVlPY~v~l~~--Ds~a~Vra~Al~Tlt~~L~~Vr~~ 496 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYID-D---EVKLDRVLPYFVHLLM--DSEADVRATALETLTELLALVRDI 496 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcc-h---HHHHhhhHHHHHHHhc--CchHHHHHHHHHHHHHHHhhccCC
Confidence 455566665542 45677888999888887763 2 3457899999999999 899999999999999998876543
Q ss_pred cCCh--hHHHHHHHHHHhhhcC-CcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHh-hcCChhHHHHHHHhHHH
Q 006253 211 FSND--MERDYIMRVVCEATLS-PEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAV-REDEEPVALQAIEFWSS 286 (653)
Q Consensus 211 ~~~~--~~~~~il~~l~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~-~~~~~~~~~~a~~~~~~ 286 (653)
.-.+ .+.+.++|.|..+..+ ....+|.....+|..++...+.++... ..+= ...+ .+.+.+ +
T Consensus 497 ~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~-q~~~---~~g~~n~~nse----------t 562 (1431)
T KOG1240|consen 497 PPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELT-QELR---QAGMLNDPNSE----------T 562 (1431)
T ss_pred CcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHH-HHHH---hcccccCcccc----------c
Confidence 2221 2446788888888877 566788889999999998877654311 0000 0001 111111 0
Q ss_pred hhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCC-Cch
Q 006253 287 VCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGD-DIV 365 (653)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~-~~~ 365 (653)
..+ ...+--...+...+..++..+.. |...-+|.+-.+.+..++..+|. +.-
T Consensus 563 ~~~-------------------~~~~~~~~~L~~~V~~~v~sLls--------d~~~~Vkr~Lle~i~~LC~FFGk~ksN 615 (1431)
T KOG1240|consen 563 APE-------------------QNYNTELQALHHTVEQMVSSLLS--------DSPPIVKRALLESIIPLCVFFGKEKSN 615 (1431)
T ss_pred ccc-------------------cccchHHHHHHHHHHHHHHHHHc--------CCchHHHHHHHHHHHHHHHHhhhcccc
Confidence 000 00000011111122222222211 11236788888889999999985 445
Q ss_pred hchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCC
Q 006253 366 PLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGST 445 (653)
Q Consensus 366 ~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~ 445 (653)
..+++.+...++|.+|..|-|-+-.+..++-..+......| ++|.+...| .|+.+.|...|+.++.-+++.-.
T Consensus 616 D~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~sey---llPLl~Q~l-tD~EE~Viv~aL~~ls~Lik~~l--- 688 (1431)
T KOG1240|consen 616 DVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEY---LLPLLQQGL-TDGEEAVIVSALGSLSILIKLGL--- 688 (1431)
T ss_pred cchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHH---HHHHHHHhc-cCcchhhHHHHHHHHHHHHHhcc---
Confidence 57788888999999999999877777655544333444444 488899999 99999999999999999988543
Q ss_pred CCccccCccchHHHHHHHHHhccc-hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHH
Q 006253 446 LETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQ 507 (653)
Q Consensus 446 ~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~ 507 (653)
..+.++.+++......+.. |.=+|..+|..|..+...++.. ...-.+.|++.+.+.
T Consensus 689 -----l~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~a-dvyc~l~P~irpfl~ 745 (1431)
T KOG1240|consen 689 -----LRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAA-DVYCKLMPLIRPFLE 745 (1431)
T ss_pred -----cchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhh-hheEEeehhhHHhhh
Confidence 3567777777777777764 7778999999999888877542 112334455554444
No 55
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.07 E-value=2.4e-09 Score=98.28 Aligned_cols=362 Identities=13% Similarity=0.178 Sum_probs=214.2
Q ss_pred chHHHHHHHhhcCCChhHHHHHHHHHHHHHhh-hcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhh
Q 006253 130 PELIGALLSNIHQLPPHTKQATLETLGYICEE-VSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQ 208 (653)
Q Consensus 130 ~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~-~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 208 (653)
.++ |.+.+.+-++|-+....+..-+..++.. -+|. +..-.-..++|.+++.+.+ ....-.+..|..++.++.+-..
T Consensus 71 ~el-p~lt~~l~SdDie~q~qav~kFR~~LS~E~~PP-Iq~VIdaGvVpRfvefm~~-~q~~mlqfEAaWalTNiaSGtt 147 (526)
T COG5064 71 SEL-PQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPP-IQPVIDAGVVPRFVEFMDE-IQRDMLQFEAAWALTNIASGTT 147 (526)
T ss_pred hhh-HHHHHHHhhhHHHHHHHHHHHHHHHhccccCCC-chhHHhccccHHHHHHHHh-cchhHHHHHHHHHHhhhccCcc
Confidence 444 7777777777777766666666655443 2222 3122234578888888853 3444566678888887664322
Q ss_pred hhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhHH--HHHHHHHHHhhcCCh--hHHHHHHHhH
Q 006253 209 ANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQ--DIFNITAKAVREDEE--PVALQAIEFW 284 (653)
Q Consensus 209 ~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~--~l~~~~~~~~~~~~~--~~~~~a~~~~ 284 (653)
..... .....-.|.+.+++.+.+.+++..++.+|+.++...+. .+.|+- ..+..++..+.+... .+...+-..+
T Consensus 148 ~QTkv-Vvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~-~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtL 225 (526)
T COG5064 148 QQTKV-VVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEG-CRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTL 225 (526)
T ss_pred cceEE-EEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchh-HHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHH
Confidence 10000 00012456677777788899999999999999876543 345543 345555555555433 4444555556
Q ss_pred HHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCC-
Q 006253 285 SSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDD- 363 (653)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~- 363 (653)
+.+|.. +.+-+...- +.+.+|.|.+.+-. . |+ .+-..|..++..++....+.
T Consensus 226 SNlcRG--------------knP~P~w~~----isqalpiL~KLiys-~-D~-------evlvDA~WAiSYlsDg~~E~i 278 (526)
T COG5064 226 SNLCRG--------------KNPPPDWSN----ISQALPILAKLIYS-R-DP-------EVLVDACWAISYLSDGPNEKI 278 (526)
T ss_pred HHhhCC--------------CCCCCchHH----HHHHHHHHHHHHhh-c-CH-------HHHHHHHHHHHHhccCcHHHH
Confidence 667652 111122222 33456666654432 1 11 12234556666665443221
Q ss_pred --chh-chHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHHh
Q 006253 364 --IVP-LVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVN-IALNFMLTALMQDPNNHVKDTTAWTLGRMFE 439 (653)
Q Consensus 364 --~~~-~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~-~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~ 439 (653)
++. -+.+.+.+.+++++..+..-++..+|.|..|.+ .+....+. ..++.+...| .++...+|..|||.++++..
T Consensus 279 ~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D-~QTqviI~~G~L~a~~~lL-s~~ke~irKEaCWTiSNITA 356 (526)
T COG5064 279 QAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSD-DQTQVIINCGALKAFRSLL-SSPKENIRKEACWTISNITA 356 (526)
T ss_pred HHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCc-cceehheecccHHHHHHHh-cChhhhhhhhhheeeccccc
Confidence 111 233456677888888888999999999998853 33222222 3456666667 77888999999999999976
Q ss_pred hhccCCCCccccCccchHHHHHHHHHhccc-hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhH--HHHHHHHHHhcccc
Q 006253 440 FLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFF--QEIVQALLTVTHRE 516 (653)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l--~~i~~~L~~~l~~~ 516 (653)
.-.+. .....-..++|.|+..+.. +.+.+..||||+.+.....-. ...+..|+ ..++..|..++.-.
T Consensus 357 Gnteq------iqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~----~PD~iryLv~qG~IkpLc~~L~~~ 426 (526)
T COG5064 357 GNTEQ------IQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLN----RPDIIRYLVSQGFIKPLCDLLDVV 426 (526)
T ss_pred CCHHH------HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccC----CchHHHHHHHccchhHHHHHHhcc
Confidence 43211 1112223567788888775 678899999999988765321 12223333 24566666777655
Q ss_pred ccchhchHHHHHHHHHHHHHhc
Q 006253 517 DAGESRLRTAAYETLNEVVRCS 538 (653)
Q Consensus 517 ~~~~~~~~~~~~~~l~~l~~~~ 538 (653)
+ .++-+.+++++..+....
T Consensus 427 d---Nkiiev~LD~~eniLk~G 445 (526)
T COG5064 427 D---NKIIEVALDAIENILKVG 445 (526)
T ss_pred C---ccchhhhHHHHHHHHhhh
Confidence 4 234457788887776653
No 56
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=2.4e-06 Score=87.63 Aligned_cols=431 Identities=12% Similarity=0.133 Sum_probs=243.8
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhhCcchH---HHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhh
Q 006253 5 VTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGF---LLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQR 81 (653)
Q Consensus 5 l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~~~~~---~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~ 81 (653)
|.++..+.-+.|.++++-.--.|-++.+++|.-. +..+...|.+ +++-+|-.|+..+.. |+
T Consensus 73 Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSIntfQk~L~D--pN~LiRasALRvlSs-IR------------- 136 (968)
T KOG1060|consen 73 FPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSINTFQKALKD--PNQLIRASALRVLSS-IR------------- 136 (968)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeHHHHHhhhcC--CcHHHHHHHHHHHHh-cc-------------
Confidence 4555666666666666666666666666543322 2223333443 356666666655544 11
Q ss_pred ccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhh
Q 006253 82 WLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEE 161 (653)
Q Consensus 82 ~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~ 161 (653)
...+. .-+.-.+-++..++.+.||+.||.+|-++...+ | +..+++++.+-..+.|.++.+.-.|..++..+|.+
T Consensus 137 vp~Ia----PI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd-~-e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPe 210 (968)
T KOG1060|consen 137 VPMIA----PIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLD-P-EQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPE 210 (968)
T ss_pred hhhHH----HHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCC-h-hhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchh
Confidence 01111 123334445677888999999999999998877 4 35668999999999999999988888888877654
Q ss_pred hcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhh-hhh-c-------------------------CCh
Q 006253 162 VSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFA-QAN-F-------------------------SND 214 (653)
Q Consensus 162 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~-~~~-~-------------------------~~~ 214 (653)
- -+.+ ..+... +.+.+. |-+.==+...++.|.+.+... .+. . ..+
T Consensus 211 r-ldLI-Hknyrk----lC~ll~--dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d 282 (968)
T KOG1060|consen 211 R-LDLI-HKNYRK----LCRLLP--DVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVND 282 (968)
T ss_pred H-HHHh-hHHHHH----HHhhcc--chhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccC
Confidence 3 2333 333343 344444 333323445666666654321 000 0 001
Q ss_pred hHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhh
Q 006253 215 MERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDI 294 (653)
Q Consensus 215 ~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 294 (653)
.+...+++..-.+++..++.+..++++.+..++-.. ....++..+++.+.+ +.+++...+..+.+++...+
T Consensus 283 ~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~------~~~~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~~~-- 353 (968)
T KOG1060|consen 283 PDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN------QVTKIAKALVRLLRS-NREVQYVVLQNIATISIKRP-- 353 (968)
T ss_pred ccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH------HHHHHHHHHHHHHhc-CCcchhhhHHHHHHHHhcch--
Confidence 111234555555555666666666666655544322 233455555665554 33455555555555554221
Q ss_pred hhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCCchhchHHHHHh
Q 006253 295 LEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEE 374 (653)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~ 374 (653)
.+..|++..++ +. . .|+ ..+...- |..++....+.-++.+++-++.
T Consensus 354 -----------------~lF~P~lKsFf------v~-s-sDp------~~vk~lK---leiLs~La~esni~~ILrE~q~ 399 (968)
T KOG1060|consen 354 -----------------TLFEPHLKSFF------VR-S-SDP------TQVKILK---LEILSNLANESNISEILRELQT 399 (968)
T ss_pred -----------------hhhhhhhhceE------ee-c-CCH------HHHHHHH---HHHHHHHhhhccHHHHHHHHHH
Confidence 22333222111 11 0 110 1122222 3334444445557888888889
Q ss_pred hhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCcc
Q 006253 375 NITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQG 454 (653)
Q Consensus 375 ~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~ 454 (653)
.+.+.+...--+++.++|..+.... ..-+.++..++..+ .+.+..|...+..++..+...-+ .
T Consensus 400 YI~s~d~~faa~aV~AiGrCA~~~~-----sv~~tCL~gLv~Ll-sshde~Vv~eaV~vIk~Llq~~p-----------~ 462 (968)
T KOG1060|consen 400 YIKSSDRSFAAAAVKAIGRCASRIG-----SVTDTCLNGLVQLL-SSHDELVVAEAVVVIKRLLQKDP-----------A 462 (968)
T ss_pred HHhcCchhHHHHHHHHHHHHHHhhC-----chhhHHHHHHHHHH-hcccchhHHHHHHHHHHHHhhCh-----------H
Confidence 9988876666666777887776432 22356677888888 76778888888888888876542 2
Q ss_pred chHHHHHHHHHhccc--hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHH
Q 006253 455 NCQQIISVLLQSMKD--VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLN 532 (653)
Q Consensus 455 ~~~~il~~l~~~l~d--~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~ 532 (653)
.+..++..+...+.. -+.-|....|.++..|+. +...+++++..+.+-+.+.. ..++...+....
T Consensus 463 ~h~~ii~~La~lldti~vp~ARA~IiWLige~~e~----------vpri~PDVLR~laksFs~E~---~evKlQILnL~a 529 (968)
T KOG1060|consen 463 EHLEILFQLARLLDTILVPAARAGIIWLIGEYCEI----------VPRIAPDVLRKLAKSFSDEG---DEVKLQILNLSA 529 (968)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhceeeeeehhhhhh----------cchhchHHHHHHHHhhcccc---chhhHHHHHhhh
Confidence 333455555555543 245555666778887764 33356777777777776554 456655555555
Q ss_pred HHHHhc
Q 006253 533 EVVRCS 538 (653)
Q Consensus 533 ~l~~~~ 538 (653)
.+.-..
T Consensus 530 KLyl~~ 535 (968)
T KOG1060|consen 530 KLYLTN 535 (968)
T ss_pred hheEec
Confidence 554433
No 57
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=99.03 E-value=1e-09 Score=82.87 Aligned_cols=76 Identities=39% Similarity=0.536 Sum_probs=68.6
Q ss_pred HHHHHHHHHhhCcchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhccCCChHHHHHHHHHHHHhcC
Q 006253 23 AEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLS 102 (653)
Q Consensus 23 A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~ 102 (653)
||++|.++..++ |+|+..|+.++.+++.+..+|++|+++|||.+.++|.... ...|..++++.|..||+.++++|.
T Consensus 1 AE~~L~~~~~~~-p~~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~W~~~~---~~~~~~~~~~~k~~Ik~~ll~~l~ 76 (77)
T PF03810_consen 1 AEQQLKQFQKQN-PGFWQYLLQILSSNSQDPEVRQLAAILLKNLIKKNWSPSK---QKGWSQLPEEEKEQIKSQLLQLLL 76 (77)
T ss_dssp HHHHHHHHHHSC-TCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHSGGHHH---HHHHHGSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH-hhHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcCchhh---ccCCCCCCHHHHHHHHHHHHHHHc
Confidence 789999999987 8999999999988778999999999999999999997544 357889999999999999999874
No 58
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.03 E-value=7.8e-05 Score=80.76 Aligned_cols=259 Identities=15% Similarity=0.200 Sum_probs=168.0
Q ss_pred HHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCC-CCcchHHHHHHHHHHHHHhcCCCchHHHHH
Q 006253 351 TCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPS-PEKLVPLVNIALNFMLTALMQDPNNHVKDT 429 (653)
Q Consensus 351 ~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~-~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~ 429 (653)
+.+..++.+..+.-+..+........++.+..++.-++..|..++.+.+ .......+..+...+...+ ++.....|..
T Consensus 638 dl~~~~a~~~~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~-qs~~~~~~~~ 716 (1176)
T KOG1248|consen 638 DLLIALAPVQTESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSF-QSSSSPAQAS 716 (1176)
T ss_pred HHHHhhhccccchhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHH-hccchHHHHH
Confidence 3334444444444444455444444555567788888888888887622 2234556777888888888 8888899999
Q ss_pred HHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc-hhhHHHHHHHHHHHHH--hcccCC-CCC-CCCCchhHHH
Q 006253 430 TAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLA--QGFEDA-ISP-SSPLTPFFQE 504 (653)
Q Consensus 430 a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~--~~~~~~-~~~-~~~l~~~l~~ 504 (653)
.+.|+..+.+..+. ....++...++.++-.+.+ |..-|..|..+|..++ ....+. ..+ ...+.+|+..
T Consensus 717 rl~~L~~L~~~~~~-------e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~ 789 (1176)
T KOG1248|consen 717 RLKCLKRLLKLLSA-------EHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSI 789 (1176)
T ss_pred HHHHHHHHHHhccH-------HHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHH
Confidence 99999999998752 2456777777777666676 6777888888888777 332111 001 2234444444
Q ss_pred HHHHHHHhccccccchhchHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHh
Q 006253 505 IVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDET-APMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCG 583 (653)
Q Consensus 505 i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 583 (653)
|...+. ... ..+....+-+++.+....++.. .+++..++..+...+.. ..+ +++..++.
T Consensus 790 Isagl~----gd~---~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s---------~sr----eI~kaAI~ 849 (1176)
T KOG1248|consen 790 ISAGLV----GDS---TRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLAS---------NSR----EIAKAAIG 849 (1176)
T ss_pred HHhhhc----ccH---HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhc---------CCH----HHHHHHHH
Confidence 444422 111 1222222556666665554432 34666655555444432 122 46667999
Q ss_pred HHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHhccC
Q 006253 584 CLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGLW 642 (653)
Q Consensus 584 ~i~~i~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~e~~~~~~~~l~~~~~~~ 642 (653)
++..++..+...- ++++.+.+++.++.........+|..+-..+-.|+..+|.+
T Consensus 850 fikvlv~~~pe~~-----l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~ 903 (1176)
T KOG1248|consen 850 FIKVLVYKFPEEC-----LSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAE 903 (1176)
T ss_pred HHHHHHHcCCHHH-----HhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHH
Confidence 9999999988764 77899999999999888777788889999999999998843
No 59
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=98.95 E-value=6e-08 Score=89.30 Aligned_cols=309 Identities=12% Similarity=0.121 Sum_probs=187.5
Q ss_pred ChhHHHHHHHHHhhhcchhhhhhHHHhhhhccCCChHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHHHhhhcCCC---
Q 006253 52 PVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLS-SPAHDARSTASQVVAKVAGIELPHK--- 127 (653)
Q Consensus 52 ~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~-~~~~~vr~~~~~~l~~ia~~~~~~~--- 127 (653)
+.+..+.|..-||+++.+-. -..+.+-....+.+++++.|. ....-+.-.++-++..|+.......
T Consensus 84 Die~q~qav~kFR~~LS~E~----------~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvV 153 (526)
T COG5064 84 DIEQQLQAVYKFRKLLSKET----------SPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVV 153 (526)
T ss_pred HHHHHHHHHHHHHHHhcccc----------CCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEE
Confidence 66777778888888876421 233555566677888999984 4556777789999999998653311
Q ss_pred CCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhHh--HHHHHHHhcccCCCCCHHHHHHHHHHHHHHHH
Q 006253 128 QWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVN--KILTAVVQGMNASESNNDVRLAATRALYNALG 205 (653)
Q Consensus 128 ~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~--~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~ 205 (653)
.-.+-+|.+++.+.+++..+|+.+..+|+.++... +. . ++++- ..+..++..+.++..+..+-..+..+|++++.
T Consensus 154 vd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS-~~-~-RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcR 230 (526)
T COG5064 154 VDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDS-EG-C-RDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCR 230 (526)
T ss_pred EeCCchHHHHHHHcCchHHHHHHHHHHhccccCCc-hh-H-HHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhC
Confidence 12477899999999999999999999999998875 22 2 23321 23334444444324445666667888887654
Q ss_pred hhhhhcCCh-hHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhHH-HHHHHHHHHhhcCChhHHHHHHHh
Q 006253 206 FAQANFSND-MERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQ-DIFNITAKAVREDEEPVALQAIEF 283 (653)
Q Consensus 206 ~~~~~~~~~-~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~~~~~a~~~ 283 (653)
-- +..++ ......+|+|.+++...|+++...++.++.-+....-+.+...+. .+.+-++..+.+++..+...++..
T Consensus 231 Gk--nP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~ 308 (526)
T COG5064 231 GK--NPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRS 308 (526)
T ss_pred CC--CCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHh
Confidence 21 11111 123467888888887788888888888877666543333222221 111222222222222222222222
Q ss_pred HHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCC
Q 006253 284 WSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDD 363 (653)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~ 363 (653)
.+.+.. ..++ ..+--++. .
T Consensus 309 vGNIVT------------------------------------------G~D~----QTqviI~~---------------G 327 (526)
T COG5064 309 VGNIVT------------------------------------------GSDD----QTQVIINC---------------G 327 (526)
T ss_pred hcCeee------------------------------------------cCcc----ceehheec---------------c
Confidence 111110 0000 00000111 1
Q ss_pred chhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhc
Q 006253 364 IVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVN-IALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLH 442 (653)
Q Consensus 364 ~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~-~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~ 442 (653)
.++.+...++++....|..++|.++.|..|.. +.+...++ +++|.++..+ ..-.-.+|..|||++++......
T Consensus 328 ----~L~a~~~lLs~~ke~irKEaCWTiSNITAGnt-eqiqavid~nliPpLi~ll-s~ae~k~kKEACWAisNatsgg~ 401 (526)
T COG5064 328 ----ALKAFRSLLSSPKENIRKEACWTISNITAGNT-EQIQAVIDANLIPPLIHLL-SSAEYKIKKEACWAISNATSGGL 401 (526)
T ss_pred ----cHHHHHHHhcChhhhhhhhhheeecccccCCH-HHHHHHHhcccchHHHHHH-HHHHHHHHHHHHHHHHhhhcccc
Confidence 22333344677777899999999999998853 44433333 6789999999 87888999999999999876553
No 60
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.95 E-value=1.3e-06 Score=94.00 Aligned_cols=363 Identities=15% Similarity=0.134 Sum_probs=228.0
Q ss_pred hHHHHHHHHHHHHHHhhhcCC-----------CCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccc---hhh
Q 006253 106 HDARSTASQVVAKVAGIELPH-----------KQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVE---QDH 171 (653)
Q Consensus 106 ~~vr~~~~~~l~~ia~~~~~~-----------~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~---~~~ 171 (653)
+.+|..+|..|..+++...|. +.-.+++|.+++.-++.....+ ..+.+....++......+. .+.
T Consensus 531 ~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~-~~l~~~~~~L~~i~~~~~~~t~~dv 609 (1176)
T KOG1248|consen 531 PELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGR-KILASRSTVLEIIRVDYFTVTPTDV 609 (1176)
T ss_pred hHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCcccc-ccHHHHHHHHHHHHHHHhhcccHHH
Confidence 488999999999998875331 1235788888888766543332 2222222222222111220 122
Q ss_pred HhHHHHHHHhcccCCCCCHHHH----HHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q 006253 172 VNKILTAVVQGMNASESNNDVR----LAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAIS 247 (653)
Q Consensus 172 ~~~l~~~l~~~l~~~~~~~~vr----~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~ 247 (653)
...+...+..... +.+..++ ..-+..+..++.+ ..+.....+..+.....+..+..+++.+++.|..+.
T Consensus 610 ~~~l~~s~~e~as--~~~~s~~~~~~~slLdl~~~~a~~-----~~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~ 682 (1176)
T KOG1248|consen 610 VGSLKDSAGELAS--DLDESVASFKTLSLLDLLIALAPV-----QTESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELS 682 (1176)
T ss_pred HHHHHHHHHhHhc--cchhhhhhHHHHHHHHHHHhhhcc-----ccchhHHHHHHhhHHhhccccHHHHHHHHHHHHHHh
Confidence 3334444443333 2222222 1122222222222 112222333333333344568899999999999988
Q ss_pred HH--hHHhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHH
Q 006253 248 ST--YYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLL 325 (653)
Q Consensus 248 ~~--~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l 325 (653)
.. .......++..+...+...++......+...+..|..+.+.. ......++++.+|.+
T Consensus 683 ~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~-------------------~~e~~~~i~k~I~Ev 743 (1176)
T KOG1248|consen 683 SSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLL-------------------SAEHCDLIPKLIPEV 743 (1176)
T ss_pred cCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhc-------------------cHHHHHHHHHHHHHH
Confidence 86 223455677788888888888877778877888887777531 122334445556655
Q ss_pred HHHhhhccCCccCCCccccHhhhHHHHHHHHH--hhc---C-CC---chhchHHHHHhhhcCcchhhHHHHHHHHHHhhc
Q 006253 326 LETLLKQEEDQDQDEGAWNIAMAGGTCLGLVA--RTV---G-DD---IVPLVMPFVEENITKQEWRQREAATYAFGSILE 396 (653)
Q Consensus 326 ~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~--~~~---~-~~---~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~ 396 (653)
+-.+. +.+ -..|..|.+||..++ ... | +. .+..+++.|...+.......+-+.+.+++.+..
T Consensus 744 IL~~K--e~n-------~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~ 814 (1176)
T KOG1248|consen 744 ILSLK--EVN-------VKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQ 814 (1176)
T ss_pred HHhcc--ccc-------HHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH
Confidence 54443 221 246788889988887 322 3 22 455566666666666655666555788888776
Q ss_pred CCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc-hhhHHH
Q 006253 397 GPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAE 475 (653)
Q Consensus 397 ~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~ 475 (653)
......-..++..++..+..++ ...++.++.+|...+..++..++.. ...++.+.++|.++...++ ...+|.
T Consensus 815 e~~~~ld~~~l~~li~~V~~~L-~s~sreI~kaAI~fikvlv~~~pe~------~l~~~~~~LL~sll~ls~d~k~~~r~ 887 (1176)
T KOG1248|consen 815 EFKNILDDETLEKLISMVCLYL-ASNSREIAKAAIGFIKVLVYKFPEE------CLSPHLEELLPSLLALSHDHKIKVRK 887 (1176)
T ss_pred HHhccccHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHcCCHH------HHhhhHHHHHHHHHHHHHhhhHHHHH
Confidence 5433334567889999999999 9999999999999999999988753 4678999999999998887 578888
Q ss_pred HHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhcccc
Q 006253 476 KACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHRE 516 (653)
Q Consensus 476 ~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~ 516 (653)
+.-..+..+++.++ .+.+.+|++.-.-.++..+...
T Consensus 888 Kvr~LlekLirkfg-----~~eLe~~~pee~~klL~nIRK~ 923 (1176)
T KOG1248|consen 888 KVRLLLEKLIRKFG-----AEELESFLPEEDMKLLTNIRKR 923 (1176)
T ss_pred HHHHHHHHHHHHhC-----HHHHHhhCHHHHHHHHHHHHHH
Confidence 88899999999875 5678888886655555555433
No 61
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.93 E-value=4.3e-07 Score=97.11 Aligned_cols=283 Identities=15% Similarity=0.136 Sum_probs=187.0
Q ss_pred hHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhc--ccccchhhHhHHHHHHHhcc
Q 006253 106 HDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVS--SDAVEQDHVNKILTAVVQGM 183 (653)
Q Consensus 106 ~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~--~~~~~~~~~~~l~~~l~~~l 183 (653)
...+..|...+..++.+.-.+....-++|.++.++.++...+|..|+.+|..++.... +..-..-..+.|+|.+...+
T Consensus 437 ~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~ 516 (1431)
T KOG1240|consen 437 IQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLL 516 (1431)
T ss_pred chhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhh
Confidence 4556677778888877653335678899999999999999999999999999877652 11100234577899998888
Q ss_pred cCCC-CCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHh-----hhcCCcHHHHHHHHHHHHHHHHHhH-HhhHH
Q 006253 184 NASE-SNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCE-----ATLSPEVKIRQAAFECLVAISSTYY-EKLAP 256 (653)
Q Consensus 184 ~~~~-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~-----~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~ 256 (653)
. | ....+|.+-..+|..++... ..++..-.. ..++++.+. ..+..+ .....
T Consensus 517 ~--d~~~~~vRiayAsnla~LA~tA----------~rFle~~q~~~~~g~~n~~nset----------~~~~~~~~~~~~ 574 (1431)
T KOG1240|consen 517 N--DSSAQIVRIAYASNLAQLAKTA----------YRFLELTQELRQAGMLNDPNSET----------APEQNYNTELQA 574 (1431)
T ss_pred c--cCccceehhhHHhhHHHHHHHH----------HHHHHHHHHHHhcccccCccccc----------ccccccchHHHH
Confidence 8 5 55668888788888766432 112222221 122222220 000000 01111
Q ss_pred hHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhh-hhhHHHHHHHhhhccCC
Q 006253 257 YIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHAL-PVLVPLLLETLLKQEED 335 (653)
Q Consensus 257 ~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~l~~~l~~~l~~~~ed 335 (653)
.++.+-..+...+.+.++-||..-++-+.-+|.. |.+.-- ..|++.|...|.
T Consensus 575 L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~F----------------------FGk~ksND~iLshLiTfLN----- 627 (1431)
T KOG1240|consen 575 LHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVF----------------------FGKEKSNDVILSHLITFLN----- 627 (1431)
T ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH----------------------hhhcccccchHHHHHHHhc-----
Confidence 1112222233445566667777666665555542 111110 134566666554
Q ss_pred ccCCCccccHhhhHHHHHHHHHhhcCCC-chhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHH
Q 006253 336 QDQDEGAWNIAMAGGTCLGLVARTVGDD-IVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFM 414 (653)
Q Consensus 336 ~~~d~~~~~~r~~a~~~L~~l~~~~~~~-~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l 414 (653)
|.+|.+|.+-.+.+.-++-+.|.. +-..++|++.+.++|++..+-..|+.++..+++.. ..-++++.++++.+
T Consensus 628 ----DkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~--ll~K~~v~~i~~~v 701 (1431)
T KOG1240|consen 628 ----DKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLG--LLRKPAVKDILQDV 701 (1431)
T ss_pred ----CccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhc--ccchHHHHHHHHhh
Confidence 124999988888777777777866 66789999999999999999999999999998752 33456778888888
Q ss_pred HHHhcCCCchHHHHHHHHHHHHHHhhhccC
Q 006253 415 LTALMQDPNNHVKDTTAWTLGRMFEFLHGS 444 (653)
Q Consensus 415 l~~l~~d~~~~vr~~a~~~l~~~~~~~~~~ 444 (653)
...| .+||.-||++++-.+......+...
T Consensus 702 ~PlL-~hPN~WIR~~~~~iI~~~~~~ls~a 730 (1431)
T KOG1240|consen 702 LPLL-CHPNLWIRRAVLGIIAAIARQLSAA 730 (1431)
T ss_pred hhhe-eCchHHHHHHHHHHHHHHHhhhhhh
Confidence 8889 9999999999999999888877643
No 62
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.92 E-value=1.3e-06 Score=84.44 Aligned_cols=438 Identities=18% Similarity=0.155 Sum_probs=237.5
Q ss_pred CCChHHHHHHHHHHHHHHhhhcCC----CCCchHHHHH---------HHhhcCCChhHHHHHHHHHHHHHhhhcccccc-
Q 006253 103 SPAHDARSTASQVVAKVAGIELPH----KQWPELIGAL---------LSNIHQLPPHTKQATLETLGYICEEVSSDAVE- 168 (653)
Q Consensus 103 ~~~~~vr~~~~~~l~~ia~~~~~~----~~~~~l~~~l---------~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~- 168 (653)
+....||..+..++....+.. |. +.|.-++|.- .-.+.++++..|..+++++..+.+.. .++++
T Consensus 7 ~~~akvr~~al~~~~~~~~~~-~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gs-k~fls~ 84 (728)
T KOG4535|consen 7 SYQAKVRQGALVCFLSTIKSI-EKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGS-KQFLSV 84 (728)
T ss_pred hHHHHHHhhHHHHHHHHHhhh-hhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhh-HHHHHH
Confidence 344678888888888877643 21 3787776652 22357788999999999999998765 22221
Q ss_pred ---------hhh-------HhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCc
Q 006253 169 ---------QDH-------VNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPE 232 (653)
Q Consensus 169 ---------~~~-------~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~ 232 (653)
.+. +..+...++-.+.. +..+.+-...++|+..++...+-+-....+...+...+-.++.+.|
T Consensus 85 a~~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~-e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d 163 (728)
T KOG4535|consen 85 AEDTSDHAFTPFSVMIACSIRELHRCLLLALVA-ESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKD 163 (728)
T ss_pred HhccCCcCCCchHHHHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCC
Confidence 111 12222233333332 5566777789999999886543211112233456677777888888
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhHHhHHHHH----------------HHHHHHh---------------------------
Q 006253 233 VKIRQAAFECLVAISSTYYEKLAPYIQDIF----------------NITAKAV--------------------------- 269 (653)
Q Consensus 233 ~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~----------------~~~~~~~--------------------------- 269 (653)
+.++..++..+..++..+.- .|-+...+ +-.++.+
T Consensus 164 ~~v~vs~l~~~~~~v~t~~~--~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~ 241 (728)
T KOG4535|consen 164 VNVRVSSLTLLGAIVSTHAP--LPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLC 241 (728)
T ss_pred CChhhHHHHHHHHHHhcCCC--CHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeee
Confidence 89999988888888775320 11111000 0011100
Q ss_pred ---------------------hc--CChhHHHHHHHhHHHhhHHHHhh-------hhhcCCCCCCCCCCc-hhhHHHhhh
Q 006253 270 ---------------------RE--DEEPVALQAIEFWSSVCDEEIDI-------LEEYGGDFSGDSDIP-CFYFIKHAL 318 (653)
Q Consensus 270 ---------------------~~--~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~-~~~~~~~~l 318 (653)
.. ....+|..|+..+..++....-+ ..-.. ...++. .+ ...+....+
T Consensus 242 ~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~-~~~~~~-~p~~~l~~a~ll 319 (728)
T KOG4535|consen 242 ISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFSMTQAYLMELGRVIC-KCMGEA-DPSIQLHGAKLL 319 (728)
T ss_pred eeeeecCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCCCC-ChHHHHHHHHHH
Confidence 00 11246777777776666542100 00000 000000 01 111222222
Q ss_pred hhhHHHHHHHhhhc-------------------cCCccCCCccccHhhhHHHHHHHHHhhc----CCCchhchHHHHHhh
Q 006253 319 PVLVPLLLETLLKQ-------------------EEDQDQDEGAWNIAMAGGTCLGLVARTV----GDDIVPLVMPFVEEN 375 (653)
Q Consensus 319 ~~l~~~l~~~l~~~-------------------~ed~~~d~~~~~~r~~a~~~L~~l~~~~----~~~~~~~l~~~l~~~ 375 (653)
.++...+....... -++.--|-...++..++.+++.++.... ++.-- ...+.+...
T Consensus 320 ~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~-T~~~~Fl~G 398 (728)
T KOG4535|consen 320 EELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQ-TLCITFLLG 398 (728)
T ss_pred HHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcch-hhhHHHHhc
Confidence 22222222111100 0000001112355556666666665432 12111 222222222
Q ss_pred h-cCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccc---c
Q 006253 376 I-TKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPI---I 451 (653)
Q Consensus 376 l-~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~---~ 451 (653)
- .+.+--+|-+|+.+++..+-..+....-.+.......++..+ .|....+|..++|++|+++..+.... |. .
T Consensus 399 C~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl-~d~~ln~r~KaawtlgnITdAL~~~~---Ps~~s~ 474 (728)
T KOG4535|consen 399 CNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSL-EDKSLNVRAKAAWSLGNITDALIVNM---PTPDSF 474 (728)
T ss_pred ccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHh-hhHhHhHHHHHHHHhhhhHHHHHcCC---CCchHH
Confidence 2 234456778888888876655443444456677778888888 88889999999999999998775311 11 1
Q ss_pred CccchHHHHHHHHHhcc----chhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHH----HHHHhccccccchhch
Q 006253 452 NQGNCQQIISVLLQSMK----DVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQ----ALLTVTHREDAGESRL 523 (653)
Q Consensus 452 ~~~~~~~il~~l~~~l~----d~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~----~L~~~l~~~~~~~~~~ 523 (653)
...+....+..++..-. |+.+|+.+|..+++++...+.+ ...+-+..+++ .+........ ...+
T Consensus 475 ~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~------i~~~~~~e~~~~~~~~l~~~v~~~~--~~kV 546 (728)
T KOG4535|consen 475 QERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQP------IEKPTFAEIIEESIQALISTVLTEA--AMKV 546 (728)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHH------hhhccHHHHHHHHHHhcccceeccc--cccc
Confidence 22334444444444322 3579999999999998876532 12222333333 2222222222 3579
Q ss_pred HHHHHHHHHHHHHhccc--ccHHHHHHHHHHHHHHHHHH
Q 006253 524 RTAAYETLNEVVRCSTD--ETAPMVMQLVPLIMMELHQT 560 (653)
Q Consensus 524 ~~~~~~~l~~l~~~~~~--~~~~~~~~l~~~l~~~l~~~ 560 (653)
|..++.++|.+.+.-.- .-.++...+++.+...+.+.
T Consensus 547 ~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~ 585 (728)
T KOG4535|consen 547 RWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSC 585 (728)
T ss_pred chHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHh
Confidence 99999999999875332 22467788888887777665
No 63
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.86 E-value=1.4e-08 Score=78.67 Aligned_cols=93 Identities=16% Similarity=0.146 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHH
Q 006253 383 QREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISV 462 (653)
Q Consensus 383 ~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~ 462 (653)
.|.+++.++++++.+.+ ..+..|++.+++.++.++ .|++++||+.|+.++.++++...+. .-++++.+++.
T Consensus 2 ~R~ggli~Laa~ai~l~-~~~~~~l~~Il~pVL~~~-~D~d~rVRy~AcEaL~ni~k~~~~~-------~l~~f~~IF~~ 72 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALG-KDISKYLDEILPPVLKCF-DDQDSRVRYYACEALYNISKVARGE-------ILPYFNEIFDA 72 (97)
T ss_pred chhHHHHHHHHHHHHch-HhHHHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 58999999999998874 558999999999999999 9999999999999999999988642 45689999999
Q ss_pred HHHhccc-hhhHHHHHHHHHHHHH
Q 006253 463 LLQSMKD-VPNVAEKACGALYFLA 485 (653)
Q Consensus 463 l~~~l~d-~~~v~~~a~~al~~~~ 485 (653)
|.+...| ++.||..| ..+.+++
T Consensus 73 L~kl~~D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 73 LCKLSADPDENVRSAA-ELLDRLL 95 (97)
T ss_pred HHHHHcCCchhHHHHH-HHHHHHh
Confidence 9999998 78887555 5555554
No 64
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.85 E-value=3.1e-06 Score=86.70 Aligned_cols=201 Identities=17% Similarity=0.155 Sum_probs=141.2
Q ss_pred ccHhhhHHHHHHHHHhhcC-CCchhchHHHHHhhh-cCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcC
Q 006253 343 WNIAMAGGTCLGLVARTVG-DDIVPLVMPFVEENI-TKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQ 420 (653)
Q Consensus 343 ~~~r~~a~~~L~~l~~~~~-~~~~~~l~~~l~~~l-~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~ 420 (653)
...|.++.+++..++...+ ++.+..++..+...+ .+.+...|..++..+..++.+.- -...+....++..++..+ .
T Consensus 204 ~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv-~R~~~~~~~~~~~L~~lL-~ 281 (415)
T PF12460_consen 204 EFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALV-MRGHPLATELLDKLLELL-S 281 (415)
T ss_pred hHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHH-HcCCchHHHHHHHHHHHh-C
Confidence 4678899999999998864 344445555444444 33445566666666666555421 111233455667777788 5
Q ss_pred CCchHHHHHHHHHHHHHHhhhccCCC---C---ccccCccchHHHHHHHHHhccc-hhhHHHHHHHHHHHHHhcccCCCC
Q 006253 421 DPNNHVKDTTAWTLGRMFEFLHGSTL---E---TPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAIS 493 (653)
Q Consensus 421 d~~~~vr~~a~~~l~~~~~~~~~~~~---~---~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~~~~~~~~ 493 (653)
| +.+...++.+++-+......-.. + .+..-..++..++|.+++..++ +...+.+-..|+..+++++.
T Consensus 282 ~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP---- 355 (415)
T PF12460_consen 282 S--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVP---- 355 (415)
T ss_pred C--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCC----
Confidence 5 77888888888887765321100 0 0112346888999999999885 44577788889999998753
Q ss_pred CCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Q 006253 494 PSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMM 555 (653)
Q Consensus 494 ~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~ 555 (653)
...+.++++.++|.+++.+.-++ ..++..+++++..+++..++-+.+|++.++|.+++
T Consensus 356 -~~vl~~~l~~LlPLLlqsL~~~~---~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 356 -KSVLLPELPTLLPLLLQSLSLPD---ADVLLSSLETLKMILEEAPELISEHLSSLIPRLLK 413 (415)
T ss_pred -HHHHHHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 57788999999999999997664 56889999999999999887788899998888865
No 65
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.85 E-value=5.5e-08 Score=91.34 Aligned_cols=187 Identities=18% Similarity=0.286 Sum_probs=127.7
Q ss_pred ccccHhhhHHHHHHHHHhhc-CCCchhchH-------HHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHH
Q 006253 341 GAWNIAMAGGTCLGLVARTV-GDDIVPLVM-------PFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALN 412 (653)
Q Consensus 341 ~~~~~r~~a~~~L~~l~~~~-~~~~~~~l~-------~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~ 412 (653)
.+|..|..|..-|..+.... +....+.++ ..+...++|....+...|+.+++.++...+ ..+.++++.++|
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~-~~~~~~~~~~l~ 97 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLG-SHFEPYADILLP 97 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHG-GGGHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-HhHHHHHHHHHH
Confidence 45999999999999888766 333333333 344456666666778889999999998774 669999999999
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHH-HHHHHHhccc-hhhHHHHHHHHHHHHHhcccC
Q 006253 413 FMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQI-ISVLLQSMKD-VPNVAEKACGALYFLAQGFED 490 (653)
Q Consensus 413 ~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~i-l~~l~~~l~d-~~~v~~~a~~al~~~~~~~~~ 490 (653)
.+++.+ .|++..+|.+|..++..++..++ +...+ ++.+..+..+ ++.+|..++..+..++...+.
T Consensus 98 ~Ll~~~-~~~~~~i~~~a~~~L~~i~~~~~------------~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~ 164 (228)
T PF12348_consen 98 PLLKKL-GDSKKFIREAANNALDAIIESCS------------YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGS 164 (228)
T ss_dssp HHHHGG-G---HHHHHHHHHHHHHHHTTS-------------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT---
T ss_pred HHHHHH-ccccHHHHHHHHHHHHHHHHHCC------------cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccc
Confidence 999999 99999999999999999998663 23345 6666666666 799999999999999988651
Q ss_pred CCCCCCCCch--hHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhcccccHHHHH
Q 006253 491 AISPSSPLTP--FFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVM 547 (653)
Q Consensus 491 ~~~~~~~l~~--~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 547 (653)
. ...+.. .++.+++.+.+.+.+.+ ..+|..+-.++..+.+..|+.....+.
T Consensus 165 ~---~~~l~~~~~~~~l~~~l~~~l~D~~---~~VR~~Ar~~~~~l~~~~~~~a~~~~~ 217 (228)
T PF12348_consen 165 D---SSVLQKSAFLKQLVKALVKLLSDAD---PEVREAARECLWALYSHFPERAESILS 217 (228)
T ss_dssp -----GGG--HHHHHHHHHHHHHHHTSS----HHHHHHHHHHHHHHHHHH-HHH-----
T ss_pred h---HhhhcccchHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHHHHHCCHhhccchh
Confidence 1 233443 45889999999999885 789999999999999888865433433
No 66
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=1.6e-05 Score=82.30 Aligned_cols=454 Identities=15% Similarity=0.154 Sum_probs=238.3
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHhhCcchHHHHHHHHHhc-CCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhccC
Q 006253 6 TQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVN-DEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLS 84 (653)
Q Consensus 6 ~~ll~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~-~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~ 84 (653)
-.++......|-+..+-....+..+.+..|..-+...-.++.+ ++.++-+|.+|.......=
T Consensus 52 ~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~----------------- 114 (734)
T KOG1061|consen 52 PDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLR----------------- 114 (734)
T ss_pred HHHHhhcccCCchHHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEe-----------------
Confidence 3344444444555555555555555444332222222222222 1345666666655443311
Q ss_pred CChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcc
Q 006253 85 LDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSS 164 (653)
Q Consensus 85 l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~ 164 (653)
.+...+++.+-+.+++.+.++.+|+.++.+++.+...+.....-..+++.|...+.|.+|.+...|+.++..|.+.- +
T Consensus 115 -v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~-~ 192 (734)
T KOG1061|consen 115 -VDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESH-P 192 (734)
T ss_pred -ehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhC-C
Confidence 12344567788999999999999999999999998765322244688999999999999999999999999998876 3
Q ss_pred cccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 006253 165 DAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLV 244 (653)
Q Consensus 165 ~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~ 244 (653)
+.........++..++..++ +-+.=-+...++++.. |.+... .....+++.+...+++.+..+.-.+.+.+.
T Consensus 193 ~~~~~~l~~~~~~~lL~al~--ec~EW~qi~IL~~l~~---y~p~d~---~ea~~i~~r~~p~Lqh~n~avvlsavKv~l 264 (734)
T KOG1061|consen 193 SVNLLELNPQLINKLLEALN--ECTEWGQIFILDCLAE---YVPKDS---REAEDICERLTPRLQHANSAVVLSAVKVIL 264 (734)
T ss_pred CCCcccccHHHHHHHHHHHH--HhhhhhHHHHHHHHHh---cCCCCc---hhHHHHHHHhhhhhccCCcceEeehHHHHH
Confidence 21101122333333444443 2222223333444333 443321 122467777777777777776667777777
Q ss_pred HHHHHhHHhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhh--------cCCCCCCC-CCCchh--hH
Q 006253 245 AISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEE--------YGGDFSGD-SDIPCF--YF 313 (653)
Q Consensus 245 ~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------~~~~~~~~-~~~~~~--~~ 313 (653)
..+......-......+-+.++..+.... ++...++.-+.-+....+.+... |.+.-..+ ..+.+. -.
T Consensus 265 ~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la 343 (734)
T KOG1061|consen 265 QLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELA 343 (734)
T ss_pred HHHHHHHHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHh
Confidence 76665555333344445444444443333 55444544333333322221111 00000000 000000 00
Q ss_pred HHhhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhc-CcchhhHHHHHHHHH
Q 006253 314 IKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENIT-KQEWRQREAATYAFG 392 (653)
Q Consensus 314 ~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~-~~~~~~r~aal~~l~ 392 (653)
....+.++++-+...-. +.| -..-+.+.+|++.++....+. ..++..+.+.+. ..+.-+. .++..+.
T Consensus 344 ~~~nl~qvl~El~eYat------evD---~~fvrkaIraig~~aik~e~~--~~cv~~lLell~~~~~yvvq-E~~vvi~ 411 (734)
T KOG1061|consen 344 NDANLAQVLAELKEYAT------EVD---VDFVRKAVRAIGRLAIKAEQS--NDCVSILLELLETKVDYVVQ-EAIVVIR 411 (734)
T ss_pred hHhHHHHHHHHHHHhhh------hhC---HHHHHHHHHHhhhhhhhhhhh--hhhHHHHHHHHhhcccceee-ehhHHHH
Confidence 01111222222221111 111 123345777888877776654 444444444444 2233333 3444455
Q ss_pred HhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc-hh
Q 006253 393 SILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VP 471 (653)
Q Consensus 393 ~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~ 471 (653)
.+...+ +.. .+.+++.+-..+..=.+|..|.+-.|.+|++++.+. ....+++.+++.+.| ..
T Consensus 412 dilRky-P~~----~~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~------------~a~elL~~f~en~~dE~~ 474 (734)
T KOG1061|consen 412 DILRKY-PNK----YESVVAILCENLDSLQEPEAKAALIWILGEYAERIE------------NALELLESFLENFKDETA 474 (734)
T ss_pred hhhhcC-CCc----hhhhhhhhcccccccCChHHHHHHHHHHhhhhhccC------------cHHHHHHHHHhhcccchH
Confidence 555544 222 244555554444112578899999999999998774 346788888888887 46
Q ss_pred hHHHHHHHHHHH-HHhcccCCCCCCCCCchhHHHHHHHHHHhccccccchhchHHHHH
Q 006253 472 NVAEKACGALYF-LAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAY 528 (653)
Q Consensus 472 ~v~~~a~~al~~-~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~ 528 (653)
.|+..-..|.-. |.+. .+-...+++.++........ ++.+|..++
T Consensus 475 ~Vql~LLta~ik~Fl~~-----------p~~tq~~l~~vL~~~~~d~~-~~dlrDr~l 520 (734)
T KOG1061|consen 475 EVQLELLTAAIKLFLKK-----------PTETQELLQGVLPLATADTD-NPDLRDRGL 520 (734)
T ss_pred HHHHHHHHHHHHHHhcC-----------CccHHHHHHHHHhhhhcccc-ChhhhhhHH
Confidence 676555433333 2221 11456777777765544332 467876544
No 67
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=0.00027 Score=73.46 Aligned_cols=343 Identities=12% Similarity=0.130 Sum_probs=201.4
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhccccc
Q 006253 88 SVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAV 167 (653)
Q Consensus 88 ~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~ 167 (653)
|..--+.+.+-+-|.+++..+-..|-.+++.|+. | ...+++.|.+...++..++.+|+.|..|...+.... |+..
T Consensus 103 dvllLltNslknDL~s~nq~vVglAL~alg~i~s---~-EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~-P~l~ 177 (866)
T KOG1062|consen 103 DLLLLLTNSLKNDLNSSNQYVVGLALCALGNICS---P-EMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKV-PDLV 177 (866)
T ss_pred HHHHHHHHHHHhhccCCCeeehHHHHHHhhccCC---H-HHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcC-chHH
Confidence 3344566677777888887666666666666654 3 267899999999999999999999999999988877 6543
Q ss_pred chhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q 006253 168 EQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAIS 247 (653)
Q Consensus 168 ~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~ 247 (653)
..+++..-+.|. +.+..|-.+++..+..++...++... +...+.+.+. ..|..+.
T Consensus 178 -----e~f~~~~~~lL~--ek~hGVL~~~l~l~~e~c~~~~~~l~---~fr~l~~~lV---------------~iLk~l~ 232 (866)
T KOG1062|consen 178 -----EHFVIAFRKLLC--EKHHGVLIAGLHLITELCKISPDALS---YFRDLVPSLV---------------KILKQLT 232 (866)
T ss_pred -----HHhhHHHHHHHh--hcCCceeeeHHHHHHHHHhcCHHHHH---HHHHHHHHHH---------------HHHHHHh
Confidence 445566666666 56677777777777776654322111 1111222111 1222222
Q ss_pred HHhH-------HhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhh
Q 006253 248 STYY-------EKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPV 320 (653)
Q Consensus 248 ~~~~-------~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 320 (653)
...+ ..-.|+++--+--+++.+...|++....=-+.+.+++... + ...+....++-.
T Consensus 233 ~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatnt-------------d---sskN~GnAILYE 296 (866)
T KOG1062|consen 233 NSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNT-------------D---SSKNAGNAILYE 296 (866)
T ss_pred cCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcc-------------c---ccccchhHHHHH
Confidence 2111 1123555533333455555556555444445555555421 0 111222222222
Q ss_pred hHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCC
Q 006253 321 LVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSP 400 (653)
Q Consensus 321 l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~ 400 (653)
.+..+ |. .+. .-..|..|..+|+++ +.+++-..|+.|+..|..+...- +
T Consensus 297 ~V~TI---~~-I~~-------~~~LrvlainiLgkF-------------------L~n~d~NirYvaLn~L~r~V~~d-~ 345 (866)
T KOG1062|consen 297 CVRTI---MD-IRS-------NSGLRVLAINILGKF-------------------LLNRDNNIRYVALNMLLRVVQQD-P 345 (866)
T ss_pred HHHHH---Hh-ccC-------CchHHHHHHHHHHHH-------------------hcCCccceeeeehhhHHhhhcCC-c
Confidence 22222 22 111 135787788777753 45566678999999998888652 2
Q ss_pred CcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc-hhhHHHHHHH
Q 006253 401 EKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACG 479 (653)
Q Consensus 401 ~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~ 479 (653)
... ..-=..|+.++ +|+++.+|.+|+..+-.+.. ...+..++..++..|.. ++.++...+.
T Consensus 346 ~av----qrHr~tIleCL-~DpD~SIkrralELs~~lvn-------------~~Nv~~mv~eLl~fL~~~d~~~k~~~as 407 (866)
T KOG1062|consen 346 TAV----QRHRSTILECL-KDPDVSIKRRALELSYALVN-------------ESNVRVMVKELLEFLESSDEDFKADIAS 407 (866)
T ss_pred HHH----HHHHHHHHHHh-cCCcHHHHHHHHHHHHHHhc-------------cccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 322 22336788899 99999999999988877764 34566777777777764 6777778888
Q ss_pred HHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhc
Q 006253 480 ALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCS 538 (653)
Q Consensus 480 al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~ 538 (653)
-+..+++.+.+. ..+ .++.+++++.... ..++..+...+-.++...
T Consensus 408 ~I~~laEkfaP~-------k~W---~idtml~Vl~~aG---~~V~~dv~~nll~LIa~~ 453 (866)
T KOG1062|consen 408 KIAELAEKFAPD-------KRW---HIDTMLKVLKTAG---DFVNDDVVNNLLRLIANA 453 (866)
T ss_pred HHHHHHHhcCCc-------chh---HHHHHHHHHHhcc---cccchhhHHHHHHHHhcC
Confidence 888888875431 122 2333333443332 234555556666666655
No 68
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.80 E-value=3.9e-07 Score=85.58 Aligned_cols=186 Identities=14% Similarity=0.181 Sum_probs=128.0
Q ss_pred hhcCCcHHHHHHHHHHHHHHHHHh-----HHhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCC
Q 006253 227 ATLSPEVKIRQAAFECLVAISSTY-----YEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGD 301 (653)
Q Consensus 227 ~~~~~~~~~~~~~~~~l~~l~~~~-----~~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 301 (653)
...+.+|+.|..++..|..++... ...+.+.+..++..+...+.+....+...|+.++..++...
T Consensus 15 ~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l---------- 84 (228)
T PF12348_consen 15 KESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQL---------- 84 (228)
T ss_dssp HHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHH----------
T ss_pred cCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH----------
Confidence 345688999999999999999877 22333445555666777777767778888998888888642
Q ss_pred CCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCCchhch-HHHHHhhhcCcc
Q 006253 302 FSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLV-MPFVEENITKQE 380 (653)
Q Consensus 302 ~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l-~~~l~~~l~~~~ 380 (653)
...+.++++.++|.+++.+.. ..-.+|..|..+|..+...++ +.+.+ .+.+.....+.+
T Consensus 85 ---------~~~~~~~~~~~l~~Ll~~~~~---------~~~~i~~~a~~~L~~i~~~~~--~~~~~~~~~l~~~~~~Kn 144 (228)
T PF12348_consen 85 ---------GSHFEPYADILLPPLLKKLGD---------SKKFIREAANNALDAIIESCS--YSPKILLEILSQGLKSKN 144 (228)
T ss_dssp ---------GGGGHHHHHHHHHHHHHGGG------------HHHHHHHHHHHHHHHTTS---H--HHHHHHHHHHTT-S-
T ss_pred ---------hHhHHHHHHHHHHHHHHHHcc---------ccHHHHHHHHHHHHHHHHHCC--cHHHHHHHHHHHHHhCCC
Confidence 133567778888999887762 123588899999999998776 33444 777778889999
Q ss_pred hhhHHHHHHHHHHhhcCCC--CCcchH--HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhcc
Q 006253 381 WRQREAATYAFGSILEGPS--PEKLVP--LVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHG 443 (653)
Q Consensus 381 ~~~r~aal~~l~~i~~~~~--~~~~~~--~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~ 443 (653)
+.+|..++.++..+....+ ...+.. .++.+.+.+...+ .|+++.||.+|-.++..+...+++
T Consensus 145 ~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l-~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 145 PQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLL-SDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHH-TSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHCCH
Confidence 9999999999999887653 133322 4678999999999 999999999999999999888763
No 69
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=0.00012 Score=76.00 Aligned_cols=361 Identities=13% Similarity=0.114 Sum_probs=190.5
Q ss_pred CCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhc
Q 006253 84 SLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVS 163 (653)
Q Consensus 84 ~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~ 163 (653)
..++|....+-+.+-+.+.+.++.||++|+.|...+.++. | +.-..+++.....+.+.+.-+..+++..+..+|+..
T Consensus 134 i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~-P-~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~- 210 (866)
T KOG1062|consen 134 ICSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKV-P-DLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKIS- 210 (866)
T ss_pred cCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcC-c-hHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcC-
Confidence 3567777778888888999999999999999999999886 5 244455666667777777778888899999999876
Q ss_pred ccccchhhHhHHHHHHHhcccC-------------CCCCHHHHHHHHHHHHHHHHhhh---h-----------hcCChhH
Q 006253 164 SDAVEQDHVNKILTAVVQGMNA-------------SESNNDVRLAATRALYNALGFAQ---A-----------NFSNDME 216 (653)
Q Consensus 164 ~~~~~~~~~~~l~~~l~~~l~~-------------~~~~~~vr~~a~~~l~~~~~~~~---~-----------~~~~~~~ 216 (653)
++.+ .++.++++-++..|++ .-++|-++...++.|.-+-.--. + +.+....
T Consensus 211 ~~~l--~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN 288 (866)
T KOG1062|consen 211 PDAL--SYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKN 288 (866)
T ss_pred HHHH--HHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhccccccc
Confidence 5544 4455555554433321 12356667667766654322100 0 0000000
Q ss_pred -HHH-HHHHHHhhhc-CCcHHHHHHHHHHHHHHHHHhHHhhH----H-----------hHHHHHHHHHHHhhcCChhHHH
Q 006253 217 -RDY-IMRVVCEATL-SPEVKIRQAAFECLVAISSTYYEKLA----P-----------YIQDIFNITAKAVREDEEPVAL 278 (653)
Q Consensus 217 -~~~-il~~l~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~----~-----------~l~~l~~~~~~~~~~~~~~~~~ 278 (653)
-+. +.+.+..++. .++..+|..++++|+++.......++ . .++.-=..++.+++|.|..++.
T Consensus 289 ~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkr 368 (866)
T KOG1062|consen 289 AGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKR 368 (866)
T ss_pred chhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHH
Confidence 011 1222222221 36678888888998888876543221 0 1111223567788999999999
Q ss_pred HHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHh
Q 006253 279 QAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVAR 358 (653)
Q Consensus 279 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~ 358 (653)
.|+|+...+... +-++. ++..++.+|...|+| .+.....-+..+++
T Consensus 369 ralELs~~lvn~---------------------~Nv~~----mv~eLl~fL~~~d~~---------~k~~~as~I~~laE 414 (866)
T KOG1062|consen 369 RALELSYALVNE---------------------SNVRV----MVKELLEFLESSDED---------FKADIASKIAELAE 414 (866)
T ss_pred HHHHHHHHHhcc---------------------ccHHH----HHHHHHHHHHhccHH---------HHHHHHHHHHHHHH
Confidence 999998888753 11232 333444444433221 22223333334444
Q ss_pred hc-CC--CchhchHHHHHhhhcCcchhhHHHHHHHH-HHhhcCCCCCcchHHHHHHHHHHHHH-hcCCCchHHHHHHHHH
Q 006253 359 TV-GD--DIVPLVMPFVEENITKQEWRQREAATYAF-GSILEGPSPEKLVPLVNIALNFMLTA-LMQDPNNHVKDTTAWT 433 (653)
Q Consensus 359 ~~-~~--~~~~~l~~~l~~~l~~~~~~~r~aal~~l-~~i~~~~~~~~~~~~l~~l~~~ll~~-l~~d~~~~vr~~a~~~ 433 (653)
.+ |+ .++..++..+... ++ -+++-+...+ .-|++++. +.-.-....++-.+... +..-+.+.+.+-+.||
T Consensus 415 kfaP~k~W~idtml~Vl~~a---G~-~V~~dv~~nll~LIa~~~~-e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~ 489 (866)
T KOG1062|consen 415 KFAPDKRWHIDTMLKVLKTA---GD-FVNDDVVNNLLRLIANAFQ-ELHEYAVLRLYLALSEDTLLDISQEPLLQVASWC 489 (866)
T ss_pred hcCCcchhHHHHHHHHHHhc---cc-ccchhhHHHHHHHHhcCCc-chhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHH
Confidence 33 32 2233444333221 11 1222222222 22344422 21111122222222211 1022455667888999
Q ss_pred HHHHHhhhccCCCC-cc-ccCccchHHHHHHHHHhccchhhHHHHHHHHHHHHHhcc
Q 006253 434 LGRMFEFLHGSTLE-TP-IINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGF 488 (653)
Q Consensus 434 l~~~~~~~~~~~~~-~~-~~~~~~~~~il~~l~~~l~d~~~v~~~a~~al~~~~~~~ 488 (653)
+|.+++.+-+.... .| ...+..+-.++..++..-..+..++..|..|+..+..-+
T Consensus 490 IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~ 546 (866)
T KOG1062|consen 490 IGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRF 546 (866)
T ss_pred hhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhc
Confidence 99999655431100 00 112233333444333332224667777777777776543
No 70
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.79 E-value=9.5e-05 Score=81.78 Aligned_cols=451 Identities=12% Similarity=0.063 Sum_probs=229.5
Q ss_pred HHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCCC
Q 006253 109 RSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASES 188 (653)
Q Consensus 109 r~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 188 (653)
+..+..+.-.++....-...+..++..++..++.+...+|-.|+.|+..+++.- |..+.. ..+-..+-+-+. |.
T Consensus 794 ~~~a~li~~~la~~r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~D-p~vL~~---~dvq~~Vh~R~~--Ds 867 (1692)
T KOG1020|consen 794 DDDAKLIVFYLAHARSFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEAD-PSVLSR---PDVQEAVHGRLN--DS 867 (1692)
T ss_pred chhHHHHHHHHHhhhHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcC-hHhhcC---HHHHHHHHHhhc--cc
Confidence 344444444444432111345677777788888788888888999998888754 554422 223334445555 78
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHH
Q 006253 189 NNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKA 268 (653)
Q Consensus 189 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~ 268 (653)
+..||.+|+..+++++.+.++. ..++...+...+.|....+|+.+++.+..++..+|.+ +....+..-+++.
T Consensus 868 sasVREAaldLvGrfvl~~~e~------~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf--~~i~~~cakmlrR 939 (1692)
T KOG1020|consen 868 SASVREAALDLVGRFVLSIPEL------IFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDF--SKIVDMCAKMLRR 939 (1692)
T ss_pred hhHHHHHHHHHHhhhhhccHHH------HHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCCh--hhHHHHHHHHHHH
Confidence 8889999999888877654332 2445555566666777888999999998888877653 2233444444555
Q ss_pred hhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhh-HHHhhhhhhHHHHHHHhhhccCCccCCCccccHhh
Q 006253 269 VREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFY-FIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAM 347 (653)
Q Consensus 269 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~ 347 (653)
+.|++..+...+.+.+..+= +.+ +.+ ..++...+-++..+..
T Consensus 940 v~DEEg~I~kLv~etf~klW---------F~p---------~~~~~d~~~~~~kI~~~~~v------------------- 982 (1692)
T KOG1020|consen 940 VNDEEGNIKKLVRETFLKLW---------FTP---------VPEVNDQPAKARKISLEVDV------------------- 982 (1692)
T ss_pred hccchhHHHHHHHHHHHHHh---------ccC---------CCcccccHHHHHhhHHHHHH-------------------
Confidence 55555556665554432221 000 000 0000000011111110
Q ss_pred hHHHHHHHHHhhcCCCchhchHHHHHh-hhc-CcchhhHH---HHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCC
Q 006253 348 AGGTCLGLVARTVGDDIVPLVMPFVEE-NIT-KQEWRQRE---AATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDP 422 (653)
Q Consensus 348 ~a~~~L~~l~~~~~~~~~~~l~~~l~~-~l~-~~~~~~r~---aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~ 422 (653)
...+. ..+...++.++..+.. ... -....+.. +...-...+...|. ..++...--... .+.
T Consensus 983 -v~~~~-----d~~~~~~eqLl~~ilk~~~~~~~~~~~~~v~~~~v~~~~~L~~~cl-------~~~i~ev~~~~~-~~~ 1048 (1692)
T KOG1020|consen 983 -VMSQV-----DLMNDWLEQLLDHILKFYLLKTMKESVKPVALAKVTHVLNLLTHCL-------VEKISEVESDDM-NEE 1048 (1692)
T ss_pred -HHHHH-----HHhcChHHHHHHHHHHHHHhhhhhhhhhHHHHhhcchHHHHHHHHH-------HHHHHhhhhHhh-hcc
Confidence 00000 0111222222221111 100 00000111 11111111111110 011111000011 233
Q ss_pred chHHH-HHHHHHHHHHHhhhccCCCCccccCc-cchHHHHHHHHHhccc--hhhHHHHHHHHHHHHHhcccCCCCCCCCC
Q 006253 423 NNHVK-DTTAWTLGRMFEFLHGSTLETPIINQ-GNCQQIISVLLQSMKD--VPNVAEKACGALYFLAQGFEDAISPSSPL 498 (653)
Q Consensus 423 ~~~vr-~~a~~~l~~~~~~~~~~~~~~~~~~~-~~~~~il~~l~~~l~d--~~~v~~~a~~al~~~~~~~~~~~~~~~~l 498 (653)
+..+| .+.+..|..|++..+. ... .|...+.|.|...-.. ...+....+..+..++..+. ..-
T Consensus 1049 ~~~~~~~~~lstL~~FskirP~-------Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~------~~s 1115 (1692)
T KOG1020|consen 1049 ESEVRLLAYLSTLFVFSKIRPQ-------LLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVA------NPS 1115 (1692)
T ss_pred cchhHHHHHHHHHHHHHhcCch-------hccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhc------cch
Confidence 33444 4556777788877642 333 7888888888776443 24555555555555555432 334
Q ss_pred chhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhHHHHH
Q 006253 499 TPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQ 578 (653)
Q Consensus 499 ~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~ 578 (653)
..|+..+=+.|++.+-.... ..+ ..++.|+++++...-..+ ..+..++..+.+.+...-.+.. .+.+......++
T Consensus 1116 esfL~sLEe~L~~~i~k~g~--a~V-~~~vsCl~sl~~k~~~~~-~~v~~cf~~~~k~le~~k~s~~-en~~~~~~p~l~ 1190 (1692)
T KOG1020|consen 1116 ESFLASLEEDLLKRIVKMGM--ATV-VEAVSCLGSLATKRTDGA-KVVKACFSCYLKLLEVIKSSNN-ENADIVNFPKLQ 1190 (1692)
T ss_pred HHHHHHHHHHHHHHHHhcch--HHH-HHHHHHHHHHHhhhccch-HHHHHHHHHHHHHHHHHHhccc-cccchhhhHHHH
Confidence 45777777778877765542 333 478889999988644333 3344455555555543211100 011111223344
Q ss_pred HHHHhHHHHHHHHhCCCc---chhh---HhhHhHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHhccCC
Q 006253 579 GLLCGCLQVIIQKLGSSE---QTKY---VFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGLWR 643 (653)
Q Consensus 579 ~~~~~~i~~i~~~~~~~~---~~~~---~~~~~~~~i~~~l~~~l~~~~~~~~e~~~~~~~~l~~~~~~~f 643 (653)
+.+-++|.+++...-.. +++. ......+.++..+....+..+.++|..|+.++|.++.....-|
T Consensus 1191 -RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l~ 1260 (1692)
T KOG1020|consen 1191 -RSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSLF 1260 (1692)
T ss_pred -HHHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchhh
Confidence 37889999999644210 1110 0113445666666666666678899999999999987766544
No 71
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.76 E-value=0.00031 Score=70.02 Aligned_cols=280 Identities=13% Similarity=0.148 Sum_probs=138.9
Q ss_pred HHHHHHHhcCCCC---hHHHHHHHHHHHHHHhhh-cCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccc
Q 006253 93 IKSFILKTLSSPA---HDARSTASQVVAKVAGIE-LPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVE 168 (653)
Q Consensus 93 i~~~ll~~l~~~~---~~vr~~~~~~l~~ia~~~-~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~ 168 (653)
+.+...+.++... ..-|..+..++.-++..+ +|+..-.+++-.+...++..++..|+....++..+.... .+.+
T Consensus 23 ~~qd~~~sfn~Spvs~r~~r~lls~l~yll~tge~f~e~~at~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~t-edvl- 100 (898)
T COG5240 23 LLQDMNESFNKSPVSTRSARKLLSNLFYLLSTGELFPEATATNLFFAILKLFQHKDLYLRQCVYSAIKELSKLT-EDVL- 100 (898)
T ss_pred HHHHHHHHhccCCCChHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhcc-hhhh-
Confidence 4444445555432 345555555555554432 343444678888889999999999988888887776654 3322
Q ss_pred hhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q 006253 169 QDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISS 248 (653)
Q Consensus 169 ~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~ 248 (653)
-....+.+-++. .....+|-.|+..|..++. .+.. ..+-..+....-+..+.++.+++-.-..+.-
T Consensus 101 -----m~tssiMkD~~~-g~~~~~kp~AiRsL~~Vid---~~tv-----~~~er~l~~a~Vs~~~a~~saalv~aYhLlp 166 (898)
T COG5240 101 -----MGTSSIMKDLNG-GVPDDVKPMAIRSLFSVID---GETV-----YDFERYLNQAFVSTSMARRSAALVVAYHLLP 166 (898)
T ss_pred -----HHHHHHHHhhcc-CCccccccHHHHHHHHhcC---cchh-----hhHHHHhhhhccccchhhhhhHHHHhhhhcc
Confidence 123344455552 2233677778888776543 1111 1122222222323344444433321111111
Q ss_pred HhHHhhHHhHHHHHHHHHHHhh----c--------CChhHHHHHHHhHHHhhHHHH----hhhhhcCCCCCCCC---CCc
Q 006253 249 TYYEKLAPYIQDIFNITAKAVR----E--------DEEPVALQAIEFWSSVCDEEI----DILEEYGGDFSGDS---DIP 309 (653)
Q Consensus 249 ~~~~~~~~~l~~l~~~~~~~~~----~--------~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~~~~~---~~~ 309 (653)
.....+..+..+.-..++..-+ + ..+-..-.|+.++.++-.+.. .+...+.+...... .+.
T Consensus 167 ~~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr~dkma~lklv~hf~~n~smknq~a~V~ 246 (898)
T COG5240 167 NNFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLLYQSKRTDKMAQLKLVEHFRGNASMKNQLAGVL 246 (898)
T ss_pred ccHHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHHHHHHhcccHHHHHHHHHHhhcccccccchhhee
Confidence 1111122222222222221111 0 111222344444444332110 00011110000000 000
Q ss_pred hhhH-------HHhhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhc-CCCchhchHHHHHhhhcCcch
Q 006253 310 CFYF-------IKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTV-GDDIVPLVMPFVEENITKQEW 381 (653)
Q Consensus 310 ~~~~-------~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~-~~~~~~~l~~~l~~~l~~~~~ 381 (653)
...+ -...+.++.|.|-.|++..-| .+..-+++++.+++... +++++...+..+...++++..
T Consensus 247 lvr~~~~ll~~n~q~~~q~rpfL~~wls~k~e---------mV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv 317 (898)
T COG5240 247 LVRATVELLKENSQALLQLRPFLNSWLSDKFE---------MVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRV 317 (898)
T ss_pred hHHHHHHHHHhChHHHHHHHHHHHHHhcCcch---------hhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchH
Confidence 0111 133445666777777663211 34455777777777655 788888888999999999999
Q ss_pred hhHHHHHHHHHHhhcC
Q 006253 382 RQREAATYAFGSILEG 397 (653)
Q Consensus 382 ~~r~aal~~l~~i~~~ 397 (653)
..|.+|+..+..++-.
T Consensus 318 ~~rFsA~Riln~lam~ 333 (898)
T COG5240 318 VLRFSAMRILNQLAMK 333 (898)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999998764
No 72
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=5.5e-07 Score=83.93 Aligned_cols=340 Identities=12% Similarity=0.134 Sum_probs=204.7
Q ss_pred hHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccC
Q 006253 106 HDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNA 185 (653)
Q Consensus 106 ~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~ 185 (653)
-.....++.+++.+.....- ..--+..+-++..+++.++.++..+...++.++-..+...+ ...+..+=+++.+.+.
T Consensus 61 lnlqrsaalafAeitek~vr-~Vsres~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~l-iv~l~Gl~~Li~qmmt- 137 (550)
T KOG4224|consen 61 LNLQRSAALAFAEITEKGVR-RVSRESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGL-IVSLLGLDLLILQMMT- 137 (550)
T ss_pred cccchHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceE-EEeccChHHHHHHhcC-
Confidence 35555677777777665422 12235556666777888999988898898887766532222 1223344445666665
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhH-HHHHHH
Q 006253 186 SESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYI-QDIFNI 264 (653)
Q Consensus 186 ~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l-~~l~~~ 264 (653)
+..++|..+..|+.+++.+-..... ..+..-+..+..+.+..+..++..+...|..+-...... ...+ ..-+|+
T Consensus 138 --d~vevqcnaVgCitnLaT~d~nk~k--iA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnR-r~LV~aG~lpv 212 (550)
T KOG4224|consen 138 --DGVEVQCNAVGCITNLATFDSNKVK--IARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENR-RVLVHAGGLPV 212 (550)
T ss_pred --CCcEEEeeehhhhhhhhccccchhh--hhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhh-hhhhccCCchh
Confidence 5678888899999998876211110 001112333444555667777778888877765443221 1111 135677
Q ss_pred HHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCcccc
Q 006253 265 TAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWN 344 (653)
Q Consensus 265 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~ 344 (653)
+...++..+.+++..|...++.++-+.. .++...+
T Consensus 213 LVsll~s~d~dvqyycttaisnIaVd~~-----------------~Rk~Laq---------------------------- 247 (550)
T KOG4224|consen 213 LVSLLKSGDLDVQYYCTTAISNIAVDRR-----------------ARKILAQ---------------------------- 247 (550)
T ss_pred hhhhhccCChhHHHHHHHHhhhhhhhHH-----------------HHHHHHh----------------------------
Confidence 7777778888888877776666654321 0011111
Q ss_pred HhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHH-HHHHHHHHHHhcCCCc
Q 006253 345 IAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLV-NIALNFMLTALMQDPN 423 (653)
Q Consensus 345 ~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l-~~l~~~ll~~l~~d~~ 423 (653)
.-|.+++.+.+.+.+++.+++.-|-.+++.++... ....+.. ..-+|.+++.+ +++.
T Consensus 248 -------------------aep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt--~Yq~eiv~ag~lP~lv~Ll-qs~~ 305 (550)
T KOG4224|consen 248 -------------------AEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDT--EYQREIVEAGSLPLLVELL-QSPM 305 (550)
T ss_pred -------------------cccchHHHHHHHHhCCChHHHHHHHHHHhhhcccc--hhhhHHHhcCCchHHHHHH-hCcc
Confidence 12444555555566666777777777777777542 1111222 23478889999 9998
Q ss_pred hHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhcc--chhhHHHHHHHHHHHHHhcccCCCCCCCCCchh
Q 006253 424 NHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMK--DVPNVAEKACGALYFLAQGFEDAISPSSPLTPF 501 (653)
Q Consensus 424 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~--d~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~ 501 (653)
.....+...|+.+++-.-.++. +-...-|+.+ |++.+. |+..++.+|...+.++.-..+ .....+
T Consensus 306 ~plilasVaCIrnisihplNe~---lI~dagfl~p----LVrlL~~~dnEeiqchAvstLrnLAasse------~n~~~i 372 (550)
T KOG4224|consen 306 GPLILASVACIRNISIHPLNEV---LIADAGFLRP----LVRLLRAGDNEEIQCHAVSTLRNLAASSE------HNVSVI 372 (550)
T ss_pred hhHHHHHHHHHhhcccccCccc---ceecccchhH----HHHHHhcCCchhhhhhHHHHHHHHhhhhh------hhhHHH
Confidence 8888888899998886554322 1122334444 444444 578899999999999986432 222222
Q ss_pred H-HHHHHHHHHhccccccchhchHHHHHHHHHHHHH
Q 006253 502 F-QEIVQALLTVTHREDAGESRLRTAAYETLNEVVR 536 (653)
Q Consensus 502 l-~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~ 536 (653)
. ..-+|.|..++-+.. -.+|...-.|++.++-
T Consensus 373 ~esgAi~kl~eL~lD~p---vsvqseisac~a~Lal 405 (550)
T KOG4224|consen 373 RESGAIPKLIELLLDGP---VSVQSEISACIAQLAL 405 (550)
T ss_pred hhcCchHHHHHHHhcCC---hhHHHHHHHHHHHHHh
Confidence 2 245777777776654 4677777778877754
No 73
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=9.9e-05 Score=75.50 Aligned_cols=249 Identities=15% Similarity=0.175 Sum_probs=150.9
Q ss_pred hHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHH
Q 006253 173 NKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYE 252 (653)
Q Consensus 173 ~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 252 (653)
.++.+-++..++ ..-+-+|+.|+-.++.+..-.++.. ..-+|-|..-+.++|+.+..+++..++++++..|+
T Consensus 143 RDLa~Dv~tLL~--sskpYvRKkAIl~lykvFLkYPeAl------r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPk 214 (877)
T KOG1059|consen 143 RDLADDVFTLLN--SSKPYVRKKAILLLYKVFLKYPEAL------RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQ 214 (877)
T ss_pred HHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHhhhHhH------hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCc
Confidence 334444455566 6778999999999988765333221 34566677778899999999999999999999986
Q ss_pred hhHHhHHHHHHHHHHHhhcCCh-hHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhh
Q 006253 253 KLAPYIQDIFNITAKAVREDEE-PVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLK 331 (653)
Q Consensus 253 ~~~~~l~~l~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~ 331 (653)
..-+ +.|..++.+...+. =+-...+.+++.++..++.+ .+. ++|.+.+.|..
T Consensus 215 nyL~----LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRL-------------------gKK----Lieplt~li~s 267 (877)
T KOG1059|consen 215 NYLQ----LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRL-------------------GKK----LIEPITELMES 267 (877)
T ss_pred cccc----ccHHHHHHHhccCCCeehHHHHHHHhhccccCchh-------------------hhh----hhhHHHHHHHh
Confidence 5443 44445555554222 23334455555555443322 222 22223222221
Q ss_pred ccCCccCCCccccHhhhHHHHHHHHHhh---cC--C--CchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcch
Q 006253 332 QEEDQDQDEGAWNIAMAGGTCLGLVART---VG--D--DIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLV 404 (653)
Q Consensus 332 ~~ed~~~d~~~~~~r~~a~~~L~~l~~~---~~--~--~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~ 404 (653)
. ..-..-.+|+..+... .| + ......++.+...+.|++...|+-++.|++.|+... +..+
T Consensus 268 T-----------~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktH-p~~V- 334 (877)
T KOG1059|consen 268 T-----------VAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTH-PKAV- 334 (877)
T ss_pred h-----------HHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhC-HHHH-
Confidence 0 0011122344333332 11 2 223455666667788999999999999999999864 3333
Q ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc-h-hhHHHHHHHHHH
Q 006253 405 PLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-V-PNVAEKACGALY 482 (653)
Q Consensus 405 ~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~-~~v~~~a~~al~ 482 (653)
..--..++++| .|.++.+|-+|+..+..+.. +..+..|+..|..++.. + ...|..-...+-
T Consensus 335 ---qa~kdlIlrcL-~DkD~SIRlrALdLl~gmVs-------------kkNl~eIVk~LM~~~~~ae~t~yrdell~~II 397 (877)
T KOG1059|consen 335 ---QAHKDLILRCL-DDKDESIRLRALDLLYGMVS-------------KKNLMEIVKTLMKHVEKAEGTNYRDELLTRII 397 (877)
T ss_pred ---HHhHHHHHHHh-ccCCchhHHHHHHHHHHHhh-------------hhhHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 23346788899 99999999999999887764 34555566666555542 2 345555554455
Q ss_pred HHHh
Q 006253 483 FLAQ 486 (653)
Q Consensus 483 ~~~~ 486 (653)
.+|.
T Consensus 398 ~iCS 401 (877)
T KOG1059|consen 398 SICS 401 (877)
T ss_pred HHhh
Confidence 5554
No 74
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.68 E-value=0.00038 Score=77.31 Aligned_cols=422 Identities=12% Similarity=0.076 Sum_probs=209.2
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhH
Q 006253 93 IKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHV 172 (653)
Q Consensus 93 i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~ 172 (653)
....++..+..+...+|..|..|++.|+..+...-.-|++-..+-..+.|....+|++|+..++.++-.. ++.+
T Consensus 817 yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~-~e~~----- 890 (1692)
T KOG1020|consen 817 YLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSI-PELI----- 890 (1692)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhcc-HHHH-----
Confidence 4455666777777899999999999999988322345888899999999999999999999999876655 4444
Q ss_pred hHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHH-HHhH
Q 006253 173 NKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAIS-STYY 251 (653)
Q Consensus 173 ~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~-~~~~ 251 (653)
.+....+.+.+. |++..||+.+++.+..++.-.++. . -+..+..-++....|++..+.+-+++.+..+= .-.+
T Consensus 891 ~qyY~~i~erIl--DtgvsVRKRvIKIlrdic~e~pdf-~---~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~ 964 (1692)
T KOG1020|consen 891 FQYYDQIIERIL--DTGVSVRKRVIKILRDICEETPDF-S---KIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVP 964 (1692)
T ss_pred HHHHHHHHhhcC--CCchhHHHHHHHHHHHHHHhCCCh-h---hHHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCC
Confidence 444555556666 899999999999999977633211 0 11223333333444444446666666655421 1111
Q ss_pred Hh-hHHhHHHHHHHHHHHhh---cCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHH---
Q 006253 252 EK-LAPYIQDIFNITAKAVR---EDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPL--- 324 (653)
Q Consensus 252 ~~-~~~~l~~l~~~~~~~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--- 324 (653)
.. -.+....-++....... +...+.-.+-+..+....... . .. . ....+....+...+..
T Consensus 965 ~~~d~~~~~~kI~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~-~----~~------~--~~~~v~~~~v~~~~~L~~~ 1031 (1692)
T KOG1020|consen 965 EVNDQPAKARKISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLK-T----MK------E--SVKPVALAKVTHVLNLLTH 1031 (1692)
T ss_pred cccccHHHHHhhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhh-h----hh------h--hhhHHHHhhcchHHHHHHH
Confidence 10 00111111111111100 000000011111111111100 0 00 0 0001222222222333
Q ss_pred -HHHHhhhccCCccCCCccccHhh-hHHHHHHHHHhhcCCCchhchHHHHHhhhcCc-----chhhHHHHHHHHHHhhcC
Q 006253 325 -LLETLLKQEEDQDQDEGAWNIAM-AGGTCLGLVARTVGDDIVPLVMPFVEENITKQ-----EWRQREAATYAFGSILEG 397 (653)
Q Consensus 325 -l~~~l~~~~ed~~~d~~~~~~r~-~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~-----~~~~r~aal~~l~~i~~~ 397 (653)
+...+...+.|+..++ .-..|. +...+|..++...|.-+.+.-+-.+...+.+. +.+.-+..+..+..+..-
T Consensus 1032 cl~~~i~ev~~~~~~~~-~~~~~~~~~lstL~~FskirP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPl 1110 (1692)
T KOG1020|consen 1032 CLVEKISEVESDDMNEE-ESEVRLLAYLSTLFVFSKIRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPL 1110 (1692)
T ss_pred HHHHHHHhhhhHhhhcc-cchhHHHHHHHHHHHHHhcCchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhh
Confidence 3333332231111111 123333 45567777777666444432233333333332 123333344444443332
Q ss_pred CCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhcc-------ch
Q 006253 398 PSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMK-------DV 470 (653)
Q Consensus 398 ~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~-------d~ 470 (653)
. .+.-..++..+=..++..+ --.+-.....|..|++.++..... .......++..++..+. ++
T Consensus 1111 v-~~~sesfL~sLEe~L~~~i-~k~g~a~V~~~vsCl~sl~~k~~~--------~~~~v~~cf~~~~k~le~~k~s~~en 1180 (1692)
T KOG1020|consen 1111 V-ANPSESFLASLEEDLLKRI-VKMGMATVVEAVSCLGSLATKRTD--------GAKVVKACFSCYLKLLEVIKSSNNEN 1180 (1692)
T ss_pred h-ccchHHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHHHhhhcc--------chHHHHHHHHHHHHHHHHHHhccccc
Confidence 1 1222334544444555555 333445556677788888876542 33444555544444332 12
Q ss_pred -----hhHHHHHHHHHHHHHhcccCC--CCCCCC----CchhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhcc
Q 006253 471 -----PNVAEKACGALYFLAQGFEDA--ISPSSP----LTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCST 539 (653)
Q Consensus 471 -----~~v~~~a~~al~~~~~~~~~~--~~~~~~----l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~ 539 (653)
.....+...+++.+++.+.-. ...+.. .....+.++..|.-..... +..+|..++.++|.++-.-+
T Consensus 1181 ~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~---~~~lR~~al~~Lg~~ci~hp 1257 (1692)
T KOG1020|consen 1181 ADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDK---DGELRRKALINLGFICIQHP 1257 (1692)
T ss_pred cchhhhHHHHHHHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHhhCc
Confidence 123456777888888753210 011111 1122334444443333333 36899999999999987665
Q ss_pred cc-cHHHHHHHHHHH
Q 006253 540 DE-TAPMVMQLVPLI 553 (653)
Q Consensus 540 ~~-~~~~~~~l~~~l 553 (653)
.- +.+.+..++..+
T Consensus 1258 ~l~~~~~v~nly~~i 1272 (1692)
T KOG1020|consen 1258 SLFTSREVLNLYDEI 1272 (1692)
T ss_pred hhhhhHHHHHHHHHH
Confidence 43 344444444433
No 75
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.67 E-value=5.5e-05 Score=77.57 Aligned_cols=224 Identities=14% Similarity=0.206 Sum_probs=148.6
Q ss_pred HHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhc-c-c
Q 006253 392 GSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSM-K-D 469 (653)
Q Consensus 392 ~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l-~-d 469 (653)
..+..+.+++...+....++..++....+..++..|..++.+++.+...+.. .+.+..++..+.... . .
T Consensus 172 ~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~---------~~~l~~~l~~~~~~~~~~~ 242 (415)
T PF12460_consen 172 SAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPD---------DDDLDEFLDSLLQSISSSE 242 (415)
T ss_pred HHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCC---------hhhHHHHHHHHHhhhcccC
Confidence 3344344333333344556665555542556699999999999999988652 346777777777666 2 2
Q ss_pred hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhccc--------c
Q 006253 470 VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTD--------E 541 (653)
Q Consensus 470 ~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~--------~ 541 (653)
....+..+...+.-+.+.+- ....|....++..|+..+.+. .+...+.++++.++.-.+. .
T Consensus 243 ~~~~~~~~~~~~~Wi~KaLv------~R~~~~~~~~~~~L~~lL~~~-----~~g~~aA~~f~il~~d~~~~l~~~~~a~ 311 (415)
T PF12460_consen 243 DSELRPQALEILIWITKALV------MRGHPLATELLDKLLELLSSP-----ELGQQAAKAFGILLSDSDDVLNKENHAN 311 (415)
T ss_pred CcchhHHHHHHHHHHHHHHH------HcCCchHHHHHHHHHHHhCCh-----hhHHHHHHHHhhHhcCcHHhcCccccch
Confidence 33334444444443333321 112366778888888888764 3455788888888766321 1
Q ss_pred cH-----HHHHHHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHhHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHH
Q 006253 542 TA-----PMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRV 616 (653)
Q Consensus 542 ~~-----~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 616 (653)
+. .++..++|.+++.++.. ++. .|...+.+++.+.+.++..- ..++++.+++.+++.
T Consensus 312 vklLykQR~F~~~~p~L~~~~~~~-------~~~------~k~~yL~ALs~ll~~vP~~v-----l~~~l~~LlPLLlqs 373 (415)
T PF12460_consen 312 VKLLYKQRFFTQVLPKLLEGFKEA-------DDE------IKSNYLTALSHLLKNVPKSV-----LLPELPTLLPLLLQS 373 (415)
T ss_pred hhhHHhHHHHHHHHHHHHHHHhhc-------Chh------hHHHHHHHHHHHHhhCCHHH-----HHHHHHHHHHHHHHH
Confidence 21 36777778877776652 111 34456778889999888653 888999999999999
Q ss_pred HhccCcchhhhHHHHHHHHHHHhccCCccc-hhhhcCC
Q 006253 617 FAIRSATAHEEAMLAIGALAYATGLWRIRY-CLIVMGL 653 (653)
Q Consensus 617 l~~~~~~~~e~~~~~~~~l~~~~~~~f~~y-~~i~~~l 653 (653)
|..++.+++..++.++..+..--.+-+.+| ..++|.|
T Consensus 374 L~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~L 411 (415)
T PF12460_consen 374 LSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRL 411 (415)
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 999988899999999999888777777777 6666643
No 76
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=0.0018 Score=67.80 Aligned_cols=586 Identities=13% Similarity=0.127 Sum_probs=265.8
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHhhCcchHHHHHHHHHhcC--CCC----hhHHHHHHHHHhhhcchhhhhhHHHhhhh
Q 006253 8 ILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVND--EKP----VESRKLAGLILKNALDAKEQHRKFELVQR 81 (653)
Q Consensus 8 ll~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~--~~~----~~~r~~a~~~l~~~i~~~~~~~~~~~~~~ 81 (653)
++.-+.+....+++|--+.|.-+.+.|+|+-|..|+.-+.+. +.| ..++..|-.++|+ |+..-.. ...
T Consensus 93 Iv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr-----~R~efrS-daL 166 (960)
T KOG1992|consen 93 IVTLMLSSPFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKR-----YRPEFRS-DAL 166 (960)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHh-----cCccccc-HHH
Confidence 344445666778888888888777777676666666544431 112 2334444434444 3210000 012
Q ss_pred ccC-------CChHHHHHHHHHHHHhc--CCCChHHHH-------HHHHHHHHHHhhhcCC---CCCchHHHHHHHhhcC
Q 006253 82 WLS-------LDSSVKAQIKSFILKTL--SSPAHDARS-------TASQVVAKVAGIELPH---KQWPELIGALLSNIHQ 142 (653)
Q Consensus 82 ~~~-------l~~~~~~~i~~~ll~~l--~~~~~~vr~-------~~~~~l~~ia~~~~~~---~~~~~l~~~l~~~l~~ 142 (653)
|.. ..+... .+.....+.. .+.+...-+ -.|..+-.+...+.|+ ++-.++++.....++.
T Consensus 167 ~~EIK~vLd~f~~Plt-~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~ 245 (960)
T KOG1992|consen 167 WLEIKLVLDRFAEPLT-DLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTY 245 (960)
T ss_pred HHHHHHHHHhhHhHHH-HHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHhc
Confidence 211 101111 1111111222 112222112 2233333333444452 2334555666666653
Q ss_pred CCh-------------hHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCC--CCCHH-HHHHHHHHHHHHHH-
Q 006253 143 LPP-------------HTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNAS--ESNND-VRLAATRALYNALG- 205 (653)
Q Consensus 143 ~~~-------------~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~~~-vr~~a~~~l~~~~~- 205 (653)
++| ..|...+..+......+ ++.+ ++.+.+++......+.+- ++..+ +...|++.|.++..
T Consensus 246 ~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kY-eEef-~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r 323 (960)
T KOG1992|consen 246 DNPLLESDEEEATVLDKLKAQICEIFNLYATKY-EEEF-QPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRR 323 (960)
T ss_pred cCcccccCcccccHHHHHHHHHHHHHHHHHHhh-HHHH-HhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhh
Confidence 322 23444455555444445 4555 566666666555555421 33333 44556777766654
Q ss_pred -hhhhhcCChhHHHH-----------------------HHHHHHhhhcCCcH-HHHHHHHHHHHHHHHHhHHhhHHhHHH
Q 006253 206 -FAQANFSNDMERDY-----------------------IMRVVCEATLSPEV-KIRQAAFECLVAISSTYYEKLAPYIQD 260 (653)
Q Consensus 206 -~~~~~~~~~~~~~~-----------------------il~~l~~~~~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~l~~ 260 (653)
+..+.|..+..... .+..+-.-+...|. ..|..+++.+..+.+.+...+.+.+..
T Consensus 324 ~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~ 403 (960)
T KOG1992|consen 324 PHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSS 403 (960)
T ss_pred hhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHH
Confidence 22333443322211 12222222322233 346678888888888775555554444
Q ss_pred HHHHHHHHhh-c--CChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCC-CCCchhhHHHhhhhhhHHHHHHHhhhccCCc
Q 006253 261 IFNITAKAVR-E--DEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGD-SDIPCFYFIKHALPVLVPLLLETLLKQEEDQ 336 (653)
Q Consensus 261 l~~~~~~~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~ 336 (653)
.+...+.... + .++.-+..++.+..+++....+ ...|- +.....+...-....+.|.|.. .+-.
T Consensus 404 ~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t-------~~~Gvtstn~lvdv~~Ff~~~ilp~L~s----~~vn- 471 (960)
T KOG1992|consen 404 EVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQT-------AKHGVTSTNELVDVVDFFANQILPDLLS----PNVN- 471 (960)
T ss_pred HHHHHHHHhccCCCccccccchhhhhhHHHHhhcch-------hhcceeeccccccHHHHHHHHhhHHhcc----Cccc-
Confidence 4444443222 2 3444455566555556543210 00110 0001112222222344454432 0000
Q ss_pred cCCCccccHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcC--------CCCCcchHHHH
Q 006253 337 DQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEG--------PSPEKLVPLVN 408 (653)
Q Consensus 337 ~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~--------~~~~~~~~~l~ 408 (653)
+..-++..+.+.+-.+=...|...+-.++|.+...+..+...+-.-|..++-.+... .++..+.+++.
T Consensus 472 ----~~pilka~aIKy~~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~ 547 (960)
T KOG1992|consen 472 ----EFPILKADAIKYIYTFRNQLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVE 547 (960)
T ss_pred ----cccchhhcccceeeeecccCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHH
Confidence 000111112222111112233344445666666666665443333333333332221 12345667777
Q ss_pred HHHHHHHHHhcCC----CchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhcc----c--hhhHHHHHH
Q 006253 409 IALNFMLTALMQD----PNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMK----D--VPNVAEKAC 478 (653)
Q Consensus 409 ~l~~~ll~~l~~d----~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~----d--~~~v~~~a~ 478 (653)
.++..+++.+ .- +++.+-.+.+..++-.-+. .-++.+.++..|.+-+. + +|..-..-.
T Consensus 548 ~ll~nLf~a~-s~p~~~EneylmKaImRii~i~~~~-----------i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLF 615 (960)
T KOG1992|consen 548 ILLTNLFKAL-SLPGKAENEYLMKAIMRIISILQSA-----------IIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLF 615 (960)
T ss_pred HHHHHHHHhc-cCCcccccHHHHHHHHHHHHhCHHh-----------hhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHH
Confidence 7777777776 32 3444444444444332222 22445555555444432 2 354444444
Q ss_pred HHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhcccccHHHHHHHHH-------
Q 006253 479 GALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVP------- 551 (653)
Q Consensus 479 ~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~------- 551 (653)
.+++.++..... ..++.+..+-..++|.+..++.+.- .+.--.++..++.+++..+....+.+..++|
T Consensus 616 Esi~~li~~t~~--~~~~~vs~~e~aL~p~fq~Il~eDI---~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lLsp~l 690 (960)
T KOG1992|consen 616 ESIGLLIRKTCK--ANPSAVSSLEEALFPVFQTILSEDI---QEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSPNL 690 (960)
T ss_pred HHHHHHHHHHhc--cCchHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcCHHH
Confidence 445544443222 2355677788888888888876442 3445588999999998887733333333333
Q ss_pred --------HHHHHHHHHHHhh--cCChhHH--HhHHHHH---------HHHHhHHHHHHHHhCCCcchhhHhhHhHHHHH
Q 006253 552 --------LIMMELHQTLEAQ--KLSSDER--EKQNEIQ---------GLLCGCLQVIIQKLGSSEQTKYVFMQYADQMM 610 (653)
Q Consensus 552 --------~l~~~l~~~~~~~--~~~~~~~--~~~~~l~---------~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~i~ 610 (653)
.++..++..+... .....++ ..+..++ ...+..+.++...+.... ..||..++.
T Consensus 691 W~r~gNipalvrLl~aflk~g~~~~~~~~~l~~iLGifqkLiaSka~Dh~GF~LLn~i~~~~~~~~-----~~py~k~i~ 765 (960)
T KOG1992|consen 691 WKRSGNIPALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLIASKANDHHGFYLLNTIIESIPPNE-----LAPYMKQIF 765 (960)
T ss_pred HhhcCCcHHHHHHHHHHHhcCchhhcccccchhHHHHHHHHhcCcccchhHHHHHHHHHhcCCHhh-----hhHHHHHHH
Confidence 3333333333211 0000010 0000000 112333444444444433 789999999
Q ss_pred HHHHHHHhccCcc-hhhhHHHHHHHHHHHhc
Q 006253 611 GLFLRVFAIRSAT-AHEEAMLAIGALAYATG 640 (653)
Q Consensus 611 ~~l~~~l~~~~~~-~~e~~~~~~~~l~~~~~ 640 (653)
..+++.+..+..+ -.+.....++..+...|
T Consensus 766 ~llf~RlqnskT~kf~k~~~vF~~~~~ik~~ 796 (960)
T KOG1992|consen 766 GLLFQRLQNSKTEKFVKSFIVFFSLFTIKKG 796 (960)
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHHhh
Confidence 9999999976432 12333334444444333
No 77
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=7.1e-06 Score=76.72 Aligned_cols=391 Identities=13% Similarity=0.084 Sum_probs=231.4
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHhhhcCCC---CCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhH
Q 006253 96 FILKTLSSPAHDARSTASQVVAKVAGIELPHK---QWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHV 172 (653)
Q Consensus 96 ~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~---~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~ 172 (653)
.++-.+.+.++.+...++.+++.+|....... ....+=+.+.+..++. ..++..+..|+..++... .....-.+.
T Consensus 89 pvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~-vevqcnaVgCitnLaT~d-~nk~kiA~s 166 (550)
T KOG4224|consen 89 PVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDG-VEVQCNAVGCITNLATFD-SNKVKIARS 166 (550)
T ss_pred HHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCC-cEEEeeehhhhhhhhccc-cchhhhhhc
Confidence 34556788899999999999999886542211 2234445666666554 455666777777776653 211101222
Q ss_pred hHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhH-
Q 006253 173 NKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYY- 251 (653)
Q Consensus 173 ~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~- 251 (653)
..+.|.. . +.+ ..+..+|..+..+|.++-..-. +-.. -.-..-+|.+..++...+.+++..++..+..++-..-
T Consensus 167 GaL~plt-r-Lak-skdirvqrnatgaLlnmThs~E-nRr~-LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~ 241 (550)
T KOG4224|consen 167 GALEPLT-R-LAK-SKDIRVQRNATGALLNMTHSRE-NRRV-LVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRA 241 (550)
T ss_pred cchhhhH-h-hcc-cchhhHHHHHHHHHHHhhhhhh-hhhh-hhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHH
Confidence 3333333 3 333 5677889999999887543211 1000 0001236777888888899999888888887765432
Q ss_pred -HhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhh-hhHHHHHHHh
Q 006253 252 -EKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALP-VLVPLLLETL 329 (653)
Q Consensus 252 -~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~l~~~l~~~l 329 (653)
+.+.+.-+.++|.++..+.+.++.++.+|--.+..++... .|..++.+ .-+|.+++.+
T Consensus 242 Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt--------------------~Yq~eiv~ag~lP~lv~Ll 301 (550)
T KOG4224|consen 242 RKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDT--------------------EYQREIVEAGSLPLLVELL 301 (550)
T ss_pred HHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccc--------------------hhhhHHHhcCCchHHHHHH
Confidence 2333444579999999999999999999988888887643 12222111 1245555544
Q ss_pred hhccCCccCCCccccHhhhHHHHHHHHHhhcCCC-------chhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCc
Q 006253 330 LKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDD-------IVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEK 402 (653)
Q Consensus 330 ~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~-------~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~ 402 (653)
+.. .-..-.+...|+..++-..+.+ ++..++.++. ..++...+..|...+..++.+. .+.
T Consensus 302 qs~---------~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~---~~dnEeiqchAvstLrnLAass-e~n 368 (550)
T KOG4224|consen 302 QSP---------MGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLR---AGDNEEIQCHAVSTLRNLAASS-EHN 368 (550)
T ss_pred hCc---------chhHHHHHHHHHhhcccccCcccceecccchhHHHHHHh---cCCchhhhhhHHHHHHHHhhhh-hhh
Confidence 310 0011112334555555443322 2333333321 1234457778888888887653 344
Q ss_pred chHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccch--HHHHHHHHHhccc-hhhHHHHHH
Q 006253 403 LVPLVN-IALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNC--QQIISVLLQSMKD-VPNVAEKAC 478 (653)
Q Consensus 403 ~~~~l~-~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~--~~il~~l~~~l~d-~~~v~~~a~ 478 (653)
...+.. ..+|.+...+ -|....||....-|+.+++-.-. .+.++ ..++|.|+....+ +..||.+|+
T Consensus 369 ~~~i~esgAi~kl~eL~-lD~pvsvqseisac~a~Lal~d~---------~k~~lld~gi~~iLIp~t~s~s~Ev~gNaA 438 (550)
T KOG4224|consen 369 VSVIRESGAIPKLIELL-LDGPVSVQSEISACIAQLALNDN---------DKEALLDSGIIPILIPWTGSESEEVRGNAA 438 (550)
T ss_pred hHHHhhcCchHHHHHHH-hcCChhHHHHHHHHHHHHHhccc---------cHHHHhhcCCcceeecccCccchhhcccHH
Confidence 444333 4577777777 88888899888888888765432 22222 3568888888877 789999999
Q ss_pred HHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhcc
Q 006253 479 GALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCST 539 (653)
Q Consensus 479 ~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~ 539 (653)
.|+.++++.........+.+-.-...|-..|..++...+ ..++..+..++..+++...
T Consensus 439 aAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S~~---~tf~hia~wTI~qLle~h~ 496 (550)
T KOG4224|consen 439 AALINLSSDVEHYARVIEAWDHPVQGIQGRLARFLASHE---LTFRHIARWTIQQLLEDHD 496 (550)
T ss_pred HHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhH---HHHHHHHHHHHHHHHHhCC
Confidence 999999876432100000000111344555556665543 5566677777777776544
No 78
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.49 E-value=7.9e-05 Score=74.10 Aligned_cols=293 Identities=14% Similarity=0.125 Sum_probs=172.7
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhccccc
Q 006253 88 SVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAV 167 (653)
Q Consensus 88 ~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~ 167 (653)
+.+.++++.|-.-+++.-+.|.--+|.++..++......+.+...+..|...+.++....|..|+++|..++-.. |+.+
T Consensus 260 q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~-P~kv 338 (898)
T COG5240 260 QALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKY-PQKV 338 (898)
T ss_pred HHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhC-Ccee
Confidence 344455555555566655778888888988888765332355667777777888899999999999999998887 7655
Q ss_pred chhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q 006253 168 EQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAIS 247 (653)
Q Consensus 168 ~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~ 247 (653)
... + +-+...++ |.+-.+...|+.+|.. .. .+...+.+++.+...+.+-+...+.-+++++..+.
T Consensus 339 -~vc-N---~evEsLIs--d~Nr~IstyAITtLLK---TG-----t~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLs 403 (898)
T COG5240 339 -SVC-N---KEVESLIS--DENRTISTYAITTLLK---TG-----TEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLS 403 (898)
T ss_pred -eec-C---hhHHHHhh--cccccchHHHHHHHHH---cC-----chhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHH
Confidence 111 1 12223334 5555555555555443 22 12233566666666666555555666777777777
Q ss_pred HHhHHhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHH
Q 006253 248 STYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLE 327 (653)
Q Consensus 248 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 327 (653)
-.+|.....|+.-+...+++ +..-+++..+++.+....+..++ .=+..+..|+.
T Consensus 404 l~Fp~k~~s~l~FL~~~L~~---eGg~eFK~~~Vdaisd~~~~~p~-----------------------skEraLe~LC~ 457 (898)
T COG5240 404 LLFPSKKLSYLDFLGSSLLQ---EGGLEFKKYMVDAISDAMENDPD-----------------------SKERALEVLCT 457 (898)
T ss_pred hhCcHHHHHHHHHHHHHHHh---cccchHHHHHHHHHHHHHhhCch-----------------------HHHHHHHHHHH
Confidence 77776544444433333322 34456777777666655543211 11233444554
Q ss_pred HhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCCchh-chHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHH
Q 006253 328 TLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVP-LVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPL 406 (653)
Q Consensus 328 ~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~-~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~ 406 (653)
.+. |. .....+.+.|+-+++.-|..--| ..+..+-+.+-=.+..+|.||+.||+.++-... +.+
T Consensus 458 fIE----Dc-------ey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~-d~~--- 522 (898)
T COG5240 458 FIE----DC-------EYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNIS-DVV--- 522 (898)
T ss_pred HHh----hc-------chhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcc-ccc---
Confidence 432 11 12335666677776655432222 222222222222345789999999999887653 222
Q ss_pred HHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 006253 407 VNI-ALNFMLTALMQDPNNHVKDTTAWTLGRMF 438 (653)
Q Consensus 407 l~~-l~~~ll~~l~~d~~~~vr~~a~~~l~~~~ 438 (653)
.++ +...+.+++ +|.+..||.+|..++..+-
T Consensus 523 ~~~sv~~~lkRcl-nD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 523 SPQSVENALKRCL-NDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred cHHHHHHHHHHHh-hcccHHHHHHHHHHHHhhh
Confidence 222 333445667 9999999999998888765
No 79
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.46 E-value=2.7e-07 Score=64.06 Aligned_cols=55 Identities=38% Similarity=0.646 Sum_probs=50.6
Q ss_pred hhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 006253 381 WRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRM 437 (653)
Q Consensus 381 ~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~ 437 (653)
|.+|.+|+++||.+++.+ .....++++.+++.+...+ +|+++.||.+|+++||++
T Consensus 1 p~vR~~A~~aLg~l~~~~-~~~~~~~~~~~~~~L~~~L-~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGC-PELLQPYLPELLPALIPLL-QDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTT-HHHHHHHHHHHHHHHHHHT-TSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhccc-HHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHhcC
Confidence 789999999999998876 5778889999999999999 999999999999999975
No 80
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=98.46 E-value=6e-07 Score=77.98 Aligned_cols=131 Identities=23% Similarity=0.405 Sum_probs=96.0
Q ss_pred hHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcc---cccc-----------hhh
Q 006253 106 HDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSS---DAVE-----------QDH 171 (653)
Q Consensus 106 ~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~---~~~~-----------~~~ 171 (653)
+.||+++|.+++.++.+++| ..||++++.+.+.+++ ++.....++.+|..+.+++.. ..+. ...
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P-~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~ 79 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWP-QQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSN 79 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-TTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHCh-hhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHH
Confidence 46899999999999999999 5999999999999987 678888999999999888731 1110 123
Q ss_pred HhHHHHHHHhcccCCC-C-CHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHH
Q 006253 172 VNKILTAVVQGMNASE-S-NNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECL 243 (653)
Q Consensus 172 ~~~l~~~l~~~l~~~~-~-~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l 243 (653)
...++..+.+.+.... . ..++...+++|+.+++.+++..... ...+++.++.+++ +++.+..+++||
T Consensus 80 ~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~---~~~~l~~~~~~l~--~~~~~~~A~~cl 148 (148)
T PF08389_consen 80 SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELII---NSNLLNLIFQLLQ--SPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHH---SSSHHHHHHHHTT--SCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhc---cHHHHHHHHHHcC--CHHHHHHHHHhC
Confidence 4566666666665311 1 2788999999999998876532211 1347888888884 445577888775
No 81
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=0.00027 Score=73.47 Aligned_cols=442 Identities=14% Similarity=0.133 Sum_probs=231.1
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHhhCcch-HHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhccCC
Q 006253 7 QILLNAQSVDGTVRKQAEESLKQYQEQNLPG-FLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSL 85 (653)
Q Consensus 7 ~ll~~~~s~d~~~r~~A~~~L~~~~~~~~~~-~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l 85 (653)
-++..+.++++.+|.-|-.....+.-....+ +...+...+. +.++.+|..|+....+.......
T Consensus 90 t~~kD~~d~np~iR~lAlrtm~~l~v~~i~ey~~~Pl~~~l~--d~~~yvRktaa~~vakl~~~~~~------------- 154 (734)
T KOG1061|consen 90 TFLKDCEDPNPLIRALALRTMGCLRVDKITEYLCDPLLKCLK--DDDPYVRKTAAVCVAKLFDIDPD------------- 154 (734)
T ss_pred hhhccCCCCCHHHHHHHhhceeeEeehHHHHHHHHHHHHhcc--CCChhHHHHHHHHHHHhhcCChh-------------
Confidence 4455667788999999988776443211122 3333445555 34889999999888776654321
Q ss_pred ChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCC---CCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhh
Q 006253 86 DSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPH---KQWPELIGALLSNIHQLPPHTKQATLETLGYICEEV 162 (653)
Q Consensus 86 ~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~---~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~ 162 (653)
-.....+.+.|-..+.++++.|-..+..++..|.+..... ..-+.++..+++.+..-++..+ +.++..+....
T Consensus 155 -~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~q---i~IL~~l~~y~ 230 (734)
T KOG1061|consen 155 -LVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQ---IFILDCLAEYV 230 (734)
T ss_pred -hccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhH---HHHHHHHHhcC
Confidence 1112245566667777888999888888999998876211 1234556666666544343333 44555555555
Q ss_pred cccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHH
Q 006253 163 SSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFEC 242 (653)
Q Consensus 163 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~ 242 (653)
|.-- .....++..+...+. ..++.+-..+.+.+...+.+++. +. ......+-+-+..++.... +..--++..
T Consensus 231 -p~d~--~ea~~i~~r~~p~Lq--h~n~avvlsavKv~l~~~~~~~~-~~-~~~~~K~~~pl~tlls~~~-e~qyvaLrN 302 (734)
T KOG1061|consen 231 -PKDS--REAEDICERLTPRLQ--HANSAVVLSAVKVILQLVKYLKQ-VN-ELLFKKVAPPLVTLLSSES-EIQYVALRN 302 (734)
T ss_pred -CCCc--hhHHHHHHHhhhhhc--cCCcceEeehHHHHHHHHHHHHH-HH-HHHHHHhcccceeeecccc-hhhHHHHhh
Confidence 3211 234567777777776 56777788889998888876654 10 0111112222222332222 555556666
Q ss_pred HHHHHHHhHHhhHHhHHHH------------------------------HHHHHHHhhcCChhHHHHHHHhHHHhhHHHH
Q 006253 243 LVAISSTYYEKLAPYIQDI------------------------------FNITAKAVREDEEPVALQAIEFWSSVCDEEI 292 (653)
Q Consensus 243 l~~l~~~~~~~~~~~l~~l------------------------------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 292 (653)
+..++...++.+...+..+ +.-+.....+.|.++...++..++.++-.
T Consensus 303 i~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik-- 380 (734)
T KOG1061|consen 303 INLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIK-- 380 (734)
T ss_pred HHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhh--
Confidence 6666666655433211111 00001111112222222333322222210
Q ss_pred hhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCCchhchHHHH
Q 006253 293 DILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFV 372 (653)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l 372 (653)
.... +.+++.++..+... .++-+ ..+...+..+...++..+ ..+++.+
T Consensus 381 ---------------------~e~~-~~cv~~lLell~~~--------~~yvv-qE~~vvi~dilRkyP~~~-~~vv~~l 428 (734)
T KOG1061|consen 381 ---------------------AEQS-NDCVSILLELLETK--------VDYVV-QEAIVVIRDILRKYPNKY-ESVVAIL 428 (734)
T ss_pred ---------------------hhhh-hhhHHHHHHHHhhc--------cccee-eehhHHHHhhhhcCCCch-hhhhhhh
Confidence 0111 34455555444311 01211 122333333333444333 4555555
Q ss_pred HhhhcC-cchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCcccc
Q 006253 373 EENITK-QEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPII 451 (653)
Q Consensus 373 ~~~l~~-~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~ 451 (653)
...+.+ +++..|.+.+|.+|.-++... ....++..+++.+ .|++..|+..-+-+.-++....+
T Consensus 429 ~~~~~sl~epeak~amiWilg~y~~~i~------~a~elL~~f~en~-~dE~~~Vql~LLta~ik~Fl~~p--------- 492 (734)
T KOG1061|consen 429 CENLDSLQEPEAKAALIWILGEYAERIE------NALELLESFLENF-KDETAEVQLELLTAAIKLFLKKP--------- 492 (734)
T ss_pred cccccccCChHHHHHHHHHHhhhhhccC------cHHHHHHHHHhhc-ccchHHHHHHHHHHHHHHHhcCC---------
Confidence 555443 457788899999998887642 2467788888888 88887777665444444332221
Q ss_pred CccchHHHHHHHHH-hccc--hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhcccccc-chhchHHHH
Q 006253 452 NQGNCQQIISVLLQ-SMKD--VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDA-GESRLRTAA 527 (653)
Q Consensus 452 ~~~~~~~il~~l~~-~l~d--~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~-~~~~~~~~~ 527 (653)
. --+..+..++. +..+ ++.+|.++..--.-+.. -......++..=...++.... .++.+.+..
T Consensus 493 -~-~tq~~l~~vL~~~~~d~~~~dlrDr~l~Y~RlLs~-----------~~~~a~~v~~~~kP~is~~~~~~~p~~le~l 559 (734)
T KOG1061|consen 493 -T-ETQELLQGVLPLATADTDNPDLRDRGLIYWRLLSE-----------DPLIAKDVVLAEKPLISEETDSLDPTLLEEL 559 (734)
T ss_pred -c-cHHHHHHHHHhhhhccccChhhhhhHHHHHHHhhc-----------CHHHHHHHHhcCCCccccCCCCCCchHHHHH
Confidence 2 33455554444 4554 58999988654443321 112333333322233333321 355677777
Q ss_pred HHHHHHHHHhc
Q 006253 528 YETLNEVVRCS 538 (653)
Q Consensus 528 ~~~l~~l~~~~ 538 (653)
+.-++++....
T Consensus 560 ~~~i~tlssVY 570 (734)
T KOG1061|consen 560 LCDIGTLSSVY 570 (734)
T ss_pred HHhhcccccee
Confidence 77777766544
No 82
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.44 E-value=2.5e-06 Score=66.18 Aligned_cols=93 Identities=23% Similarity=0.365 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHh
Q 006253 147 TKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCE 226 (653)
Q Consensus 147 ~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~ 226 (653)
.|.+++.+|..++..+ +..+ ..+++.|++.++.++. |++++||..|+++|+++.....+.+. .+.+.+++.+..
T Consensus 2 ~R~ggli~Laa~ai~l-~~~~-~~~l~~Il~pVL~~~~--D~d~rVRy~AcEaL~ni~k~~~~~~l--~~f~~IF~~L~k 75 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIAL-GKDI-SKYLDEILPPVLKCFD--DQDSRVRYYACEALYNISKVARGEIL--PYFNEIFDALCK 75 (97)
T ss_pred chhHHHHHHHHHHHHc-hHhH-HHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 5889999999999888 5556 7899999999999999 89999999999999999887655332 245789999999
Q ss_pred hhcCCcHHHHHHHHHHHHHH
Q 006253 227 ATLSPEVKIRQAAFECLVAI 246 (653)
Q Consensus 227 ~~~~~~~~~~~~~~~~l~~l 246 (653)
...|+++.++..+ +.|-++
T Consensus 76 l~~D~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 76 LSADPDENVRSAA-ELLDRL 94 (97)
T ss_pred HHcCCchhHHHHH-HHHHHH
Confidence 9999999998765 444433
No 83
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=98.44 E-value=0.00067 Score=71.52 Aligned_cols=227 Identities=13% Similarity=0.091 Sum_probs=139.5
Q ss_pred HHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHH
Q 006253 386 AATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQ 465 (653)
Q Consensus 386 aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~ 465 (653)
-++++++..++.. -...+.+..++...+..+..|..+.+|.+|+.++..+++. ....++.+.++..+.+
T Consensus 469 Ra~~~i~~fs~~~--~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~---------~vl~~~~p~ild~L~q 537 (1005)
T KOG2274|consen 469 RAFLTISKFSSST--VINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYCKV---------KVLLSLQPMILDGLLQ 537 (1005)
T ss_pred HHHHHHHHHHhhh--ccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhccCc---------eeccccchHHHHHHHH
Confidence 5666777666542 1223445555565565554677788999888887777732 2367888888888888
Q ss_pred hccc-hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhcccccHH
Q 006253 466 SMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAP 544 (653)
Q Consensus 466 ~l~d-~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 544 (653)
...+ +..|-.....+|+.+|+.- ++.-...-..|+|..+.+....++ ++.+-..+-+++..+.+. .....|
T Consensus 538 las~~s~evl~llmE~Ls~vv~~d------pef~as~~skI~P~~i~lF~k~s~-DP~V~~~~qd~f~el~q~-~~~~g~ 609 (1005)
T KOG2274|consen 538 LASKSSDEVLVLLMEALSSVVKLD------PEFAASMESKICPLTINLFLKYSE-DPQVASLAQDLFEELLQI-AANYGP 609 (1005)
T ss_pred HcccccHHHHHHHHHHHHHHhccC------hhhhhhhhcchhHHHHHHHHHhcC-CchHHHHHHHHHHHHHHH-HHhhcc
Confidence 7765 4555555556677666531 222222233445555554444333 355666677777777763 234578
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHhHHHHHHHHhCCCcchhhHhhH-hHHHHHHHHHHHHhc-cCc
Q 006253 545 MVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQ-YADQMMGLFLRVFAI-RSA 622 (653)
Q Consensus 545 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~-~~~~i~~~l~~~l~~-~~~ 622 (653)
+-..++|.+++.++.. .++. ...++..+++.+.++.+.-.+. +.. ....+++.+.++.-. ++.
T Consensus 610 m~e~~iPslisil~~~--------~~~~-~~~l~~~aidvLttvvr~tp~p------L~~~l~~~~FpaVak~tlHsdD~ 674 (1005)
T KOG2274|consen 610 MQERLIPSLISVLQLN--------ADKA-PAGLCAIAIDVLTTVLRNTPSP------LPNLLICYAFPAVAKITLHSDDH 674 (1005)
T ss_pred hHHHHHHHHHHHHcCc--------cccc-CchhhHHHHHHHHHHHhcCCCC------ccHHHHHHHhHHhHhheeecCCh
Confidence 8899999999988752 2221 1356778899999999987665 443 444556666555533 333
Q ss_pred chhhhHHHHHHHHHHHhccCCccc
Q 006253 623 TAHEEAMLAIGALAYATGLWRIRY 646 (653)
Q Consensus 623 ~~~e~~~~~~~~l~~~~~~~f~~y 646 (653)
+....+-+|+..+..+-.++..-|
T Consensus 675 ~tlQ~~~EcLra~Is~~~eq~~t~ 698 (1005)
T KOG2274|consen 675 ETLQNATECLRALISVTLEQLLTW 698 (1005)
T ss_pred HHHHhHHHHHHHHHhcCHHHHHhh
Confidence 455666677777776644444433
No 84
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=0.00086 Score=69.22 Aligned_cols=340 Identities=14% Similarity=0.135 Sum_probs=187.1
Q ss_pred HHHHHHhhhcchhhhhhHHHhhhhccCCC-hHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh---hcCCCCCchHH
Q 006253 58 LAGLILKNALDAKEQHRKFELVQRWLSLD-SSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGI---ELPHKQWPELI 133 (653)
Q Consensus 58 ~a~~~l~~~i~~~~~~~~~~~~~~~~~l~-~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~---~~~~~~~~~l~ 133 (653)
+.+..+|+-++......++.-......+. +|..+.+.+.+..+|.+....||+.|..++..|.+. .+| .-|+++
T Consensus 99 Lvcna~RkDLQHPNEyiRG~TLRFLckLkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~p--DapeLi 176 (948)
T KOG1058|consen 99 LVCNAYRKDLQHPNEYIRGSTLRFLCKLKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIP--DAPELI 176 (948)
T ss_pred HHHHHHhhhccCchHhhcchhhhhhhhcCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcC--ChHHHH
Confidence 44444455444333333332222222333 567788888999999999999999999999999875 223 445666
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHHhhhccccc----c-hhhHhHHHHH-HHhcccCC-CCCHHHHHHHHHHHHHHHHh
Q 006253 134 GALLSNIHQLPPHTKQATLETLGYICEEVSSDAV----E-QDHVNKILTA-VVQGMNAS-ESNNDVRLAATRALYNALGF 206 (653)
Q Consensus 134 ~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~----~-~~~~~~l~~~-l~~~l~~~-~~~~~vr~~a~~~l~~~~~~ 206 (653)
...+. ...|+.-++.|+..|...-.+-.-.++ + .+.+...++. +++.+... ..++..+..-++|+++++..
T Consensus 177 ~~fL~--~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~s 254 (948)
T KOG1058|consen 177 ESFLL--TEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSS 254 (948)
T ss_pred HHHHH--hccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhc
Confidence 55544 334666666676666544322100000 0 0111222221 22222210 23466677778888876653
Q ss_pred hhhhcCChhHHHHHHHHHHhhh-cCCcHHHHHHHHHHHHHHHHHhHHh----------------hHHhHHHHHHHHHHHh
Q 006253 207 AQANFSNDMERDYIMRVVCEAT-LSPEVKIRQAAFECLVAISSTYYEK----------------LAPYIQDIFNITAKAV 269 (653)
Q Consensus 207 ~~~~~~~~~~~~~il~~l~~~~-~~~~~~~~~~~~~~l~~l~~~~~~~----------------~~~~l~~l~~~~~~~~ 269 (653)
.+.. ...+.-..+. -.+++...+.+..++..++...++. -...+++++--+++.+
T Consensus 255 tssa--------V~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvL 326 (948)
T KOG1058|consen 255 TSSA--------VIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVL 326 (948)
T ss_pred CCch--------hhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHc
Confidence 2111 1111111111 1244555555555555544433211 1123455666667778
Q ss_pred hcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccccHhhhH
Q 006253 270 REDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAG 349 (653)
Q Consensus 270 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a 349 (653)
...|-++|..++++...++... .++.++..+.+-+......+. ++.-..|..-
T Consensus 327 ss~dldvr~Ktldi~ldLvssr-------------------------Nvediv~~Lkke~~kT~~~e~--d~~~~yRqlL 379 (948)
T KOG1058|consen 327 SSPDLDVRSKTLDIALDLVSSR-------------------------NVEDIVQFLKKEVMKTHNEES--DDNGKYRQLL 379 (948)
T ss_pred CcccccHHHHHHHHHHhhhhhc-------------------------cHHHHHHHHHHHHHhcccccc--ccchHHHHHH
Confidence 8888899999998877776531 122344555443332211111 1223567777
Q ss_pred HHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHH
Q 006253 350 GTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDT 429 (653)
Q Consensus 350 ~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~ 429 (653)
.+++...+-.++ ++...+++.+.+.++|.+...-.+.+..+....+.. ++--. .++..++..+.+=..+.+-..
T Consensus 380 iktih~cav~Fp-~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~-p~Lr~----~ii~~l~~~~~~irS~ki~rg 453 (948)
T KOG1058|consen 380 IKTIHACAVKFP-EVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKF-PNLRA----SIIEKLLETFPQIRSSKICRG 453 (948)
T ss_pred HHHHHHHhhcCh-HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhC-chHHH----HHHHHHHHhhhhhcccccchh
Confidence 777776666655 445567777888889988877777888888877764 22222 233444433312245567788
Q ss_pred HHHHHHHHHhhhc
Q 006253 430 TAWTLGRMFEFLH 442 (653)
Q Consensus 430 a~~~l~~~~~~~~ 442 (653)
|+|.+|.+++...
T Consensus 454 alwi~GeYce~~~ 466 (948)
T KOG1058|consen 454 ALWILGEYCEGLS 466 (948)
T ss_pred HHHHHHHHHhhhH
Confidence 9999999998664
No 85
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.37 E-value=9.7e-07 Score=73.49 Aligned_cols=110 Identities=15% Similarity=0.218 Sum_probs=85.5
Q ss_pred hHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCC
Q 006253 368 VMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVN-IALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTL 446 (653)
Q Consensus 368 l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~-~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~ 446 (653)
+++.+.+.+.+++|..|+.++++++.++... +.....++. .+++.++..+ +|+++.++..+++++++++.....
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~l~~~l-~~~~~~v~~~a~~~L~~l~~~~~~--- 82 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGN-NDNIQAVVEAGGLPALVQLL-KSEDEEVVKAALWALRNLAAGPED--- 82 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCChHHHHHHH-hCCCHHHHHHHHHHHHHHccCcHH---
Confidence 4555666777888999999999999999874 344444455 7899999999 999999999999999999876531
Q ss_pred CccccCccch-HHHHHHHHHhccc-hhhHHHHHHHHHHHHHh
Q 006253 447 ETPIINQGNC-QQIISVLLQSMKD-VPNVAEKACGALYFLAQ 486 (653)
Q Consensus 447 ~~~~~~~~~~-~~il~~l~~~l~d-~~~v~~~a~~al~~~~~ 486 (653)
...... ..+++.+++.+++ +..++..+++++.++++
T Consensus 83 ----~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 83 ----NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred ----HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 112222 2478888888886 68999999999998863
No 86
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=0.0054 Score=63.61 Aligned_cols=509 Identities=14% Similarity=0.148 Sum_probs=253.3
Q ss_pred HHHhhCcchHHHHHHHHHhcC--CCChhHHHHHHHHHhhhcchhhhhhHHHhhhhccCCChHHHHHHHHHHHHhcCCCCh
Q 006253 29 QYQEQNLPGFLLSLAGELVND--EKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAH 106 (653)
Q Consensus 29 ~~~~~~~~~~~~~l~~il~~~--~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~ 106 (653)
.+..++.|+......+++..- ..++.+-..++-..+.++. |-.++-=.-+...+.|++.+. .+
T Consensus 181 aMR~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVS-------------WIdInLIaNd~f~nLLy~fl~--ie 245 (980)
T KOG2021|consen 181 AMRDNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVS-------------WIDINLIANDYFLNLLYKFLN--IE 245 (980)
T ss_pred HHHhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhh-------------hhhhhhhhchhHHHHHHHHHh--HH
Confidence 345556777777777777531 2367777777777777663 655554344455666777776 56
Q ss_pred HHHHHHHHHHHHHHhhhc-CCCCCchHHHHHHHhh---------cCCChhHHHHHHHHHHHHHhhhc---cc---ccc--
Q 006253 107 DARSTASQVVAKVAGIEL-PHKQWPELIGALLSNI---------HQLPPHTKQATLETLGYICEEVS---SD---AVE-- 168 (653)
Q Consensus 107 ~vr~~~~~~l~~ia~~~~-~~~~~~~l~~~l~~~l---------~~~~~~~~~~~l~~l~~l~~~~~---~~---~~~-- 168 (653)
.+|-+||.|+-.+..+-. |. .--.+++.|.+.+ +..|++..+..-..+.....++- .+ ..+
T Consensus 246 elR~aac~cilaiVsKkMkP~-dKL~lln~L~q~l~lfg~~s~dq~~d~df~e~vskLitg~gvel~~i~s~lnseld~~ 324 (980)
T KOG2021|consen 246 ELRIAACNCILAIVSKKMKPM-DKLALLNMLNQTLELFGYHSADQMDDLDFWESVSKLITGFGVELTIIISQLNSELDTL 324 (980)
T ss_pred HHHHHHHHHHHHHHhcCCChh-HHHHHHHHHHHHHHHHhhhccccccCchHHHHHHHHHhhcceeeehhHhhhhhccCHH
Confidence 899999999999987642 32 1224445543322 11344443333333322211110 00 000
Q ss_pred --h---hhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhc--CChh--HHHHHHHHHHhhh-------cCCc
Q 006253 169 --Q---DHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANF--SNDM--ERDYIMRVVCEAT-------LSPE 232 (653)
Q Consensus 169 --~---~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~--~~~~--~~~~il~~l~~~~-------~~~~ 232 (653)
+ ..+..++|.+++.++ +...++....+..++..+.+.+... .... +...++..+..-+ .+++
T Consensus 325 ~kqn~l~~ll~~vpyllq~l~--~e~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~kqicydemy~nddn 402 (980)
T KOG2021|consen 325 YKQNVLSILLEIVPYLLQFLN--NEFDDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQICYDEMYFNDDN 402 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHhc--ccchhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHHHHhccHHhhcccC
Confidence 1 123446777888888 4555555566666666666554322 1110 1123333332211 1111
Q ss_pred ----------HHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCC
Q 006253 233 ----------VKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDF 302 (653)
Q Consensus 233 ----------~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 302 (653)
.++|+..-..+..++...|+.+-..+..-+...+..-++......+.|+..+..+++..+.-.-. ..
T Consensus 403 ~tg~EeEa~f~e~RkkLk~fqdti~~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~---~n 479 (980)
T KOG2021|consen 403 VTGDEEEAFFEEVRKKLKNFQDTIVVIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFG---LN 479 (980)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhcccccccc---cc
Confidence 24566666666666766776665555555555554455566677788888888888753211100 01
Q ss_pred CCCCCCchhhHHHhhhhhhHHHHHHH-hhhccCCccCCCccccHhhhHHHHHHHHHh---hc--CCCchhchHHHHH--h
Q 006253 303 SGDSDIPCFYFIKHALPVLVPLLLET-LLKQEEDQDQDEGAWNIAMAGGTCLGLVAR---TV--GDDIVPLVMPFVE--E 374 (653)
Q Consensus 303 ~~~~~~~~~~~~~~~l~~l~~~l~~~-l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~---~~--~~~~~~~l~~~l~--~ 374 (653)
.|+ +.. ...+..+++.++.. ... +.-+..+...+..+.+ .+ ....+|.++..+. .
T Consensus 480 sgd--~s~----~~vl~~~~~ll~tsqv~~-----------h~h~lVqLlfmE~ivRY~kff~~esq~ip~vL~aFld~r 542 (980)
T KOG2021|consen 480 SGD--IST----SQVLFLNELLLMTSQVLA-----------HDHELVQLLFMELIVRYNKFFSTESQKIPLVLNAFLDSR 542 (980)
T ss_pred Ccc--ccH----HHHHHHHHHHHHHccccc-----------CCchHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHccch
Confidence 111 000 01122222222210 000 0001112222222222 11 1122333333222 1
Q ss_pred hhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHH---------------------------------------
Q 006253 375 NITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFML--------------------------------------- 415 (653)
Q Consensus 375 ~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll--------------------------------------- 415 (653)
.+.+.+.++|.-|-+.+..+.... +..+.+++++++..+-
T Consensus 543 glhn~ne~Vr~RawYLF~RfVKlL-kkqlvpfie~iln~iqdlL~~~vtt~N~~s~~lt~fddqlyIfEtiGviI~l~n~ 621 (980)
T KOG2021|consen 543 GLHNKNENVRLRAWYLFTRFVKLL-KKQLVPFIEEILNKIQDLLHIKVTTINAQSDNLTIFDDQLYIFETIGVIITLNNS 621 (980)
T ss_pred hccccccccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCcCCCcCccccccccccccceeeecceEEEeCCCC
Confidence 223333333333322222222211 1112222222222111
Q ss_pred --------------------------HHhcCCCchHHH----HHHHHHHHHHHhhhccCCCC--ccccCccchHHHHHHH
Q 006253 416 --------------------------TALMQDPNNHVK----DTTAWTLGRMFEFLHGSTLE--TPIINQGNCQQIISVL 463 (653)
Q Consensus 416 --------------------------~~l~~d~~~~vr----~~a~~~l~~~~~~~~~~~~~--~~~~~~~~~~~il~~l 463 (653)
..+..|....+. +.++-++|.+++.+...... ++ .....+.+++..+
T Consensus 622 paE~qaay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c~~~lmaig~lakgf~~rlvt~~qv-g~~~vf~~~ldvi 700 (980)
T KOG2021|consen 622 PAELQAAYANTLITPLILDQIIGLLFAQLASDEASPVVIAECHHILMAIGTLAKGFHIRLVTENQV-GNMVVFSNILDVI 700 (980)
T ss_pred CHHHHHHHHhcccChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhhcccccCcchhcc-cHHHHHHHHHHHH
Confidence 112123222222 23345677777766532110 00 0112344555555
Q ss_pred HHhccc---hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhccc
Q 006253 464 LQSMKD---VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTD 540 (653)
Q Consensus 464 ~~~l~d---~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~ 540 (653)
+..+.- ...+|.+.-..+++++..++ ..+.||++..+..+++-. + -.++. ..+..++.++.....
T Consensus 701 l~~ls~f~k~E~iRsavrft~hRmI~~lg------~~vlPfipklie~lL~s~---d--~kEmv-dfl~flsQLihkfk~ 768 (980)
T KOG2021|consen 701 LVTLSFFNKFENIRSAVRFTFHRMIPILG------NKVLPFIPKLIELLLSST---D--LKEMV-DFLGFLSQLIHKFKT 768 (980)
T ss_pred HHHHhhccccchhHHHHHHHHHHHHHhcc------hhhhcchHHHHHHHHhcC---C--HHHHH-HHHHHHHHHHHHHHH
Confidence 554442 45678888889999999886 458899999888876643 2 12333 577788888888888
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhhcC--ChhHHHhHHHHHHHHHhHHHHHH
Q 006253 541 ETAPMVMQLVPLIMMELHQTLEAQKL--SSDEREKQNEIQGLLCGCLQVII 589 (653)
Q Consensus 541 ~~~~~~~~l~~~l~~~l~~~~~~~~~--~~~~~~~~~~l~~~~~~~i~~i~ 589 (653)
++.+++.+++|+++.++-..+..... .+++......+|...+..+.++.
T Consensus 769 ~~~~ilnqmlppll~rIfsvi~r~a~p~dt~aa~ek~~lrksy~~fLqtft 819 (980)
T KOG2021|consen 769 DCYQILNQMLPPLLNRIFSVIERIAKPIDTAAAAEKILLRKSYCTFLQTFT 819 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCCChhHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999998887762211 11111112346666777777776
No 87
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.26 E-value=0.00057 Score=69.47 Aligned_cols=117 Identities=16% Similarity=0.148 Sum_probs=81.4
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhh--hh
Q 006253 133 IGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQ--AN 210 (653)
Q Consensus 133 ~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~--~~ 210 (653)
..-+.....+.+..+|..|+..+-.+.+.+ .+ -..+.......++ |.+..||.+|++.+.-+....+ ..
T Consensus 200 ~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~---kL----~~~~Y~~A~~~ls--D~~e~VR~aAvqlv~v~gn~~p~~~e 270 (823)
T KOG2259|consen 200 ARGLIYLEHDQDFRVRTHAVEGLLALSEGF---KL----SKACYSRAVKHLS--DDYEDVRKAAVQLVSVWGNRCPAPLE 270 (823)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhhcccc---cc----cHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHhcCCCccc
Confidence 333666677788888888888877766533 12 2445666677888 8889999999999888766552 11
Q ss_pred cCCh--hHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhH
Q 006253 211 FSND--MERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYI 258 (653)
Q Consensus 211 ~~~~--~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l 258 (653)
...+ ...+..+..++..+.|-+..+|..+.+.|+.+-....+.+...+
T Consensus 271 ~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTL 320 (823)
T KOG2259|consen 271 RESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTL 320 (823)
T ss_pred chhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHH
Confidence 1111 12356777888889999999999999999987766555444333
No 88
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=0.0092 Score=62.00 Aligned_cols=319 Identities=12% Similarity=0.125 Sum_probs=177.1
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchh
Q 006253 91 AQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQD 170 (653)
Q Consensus 91 ~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~ 170 (653)
--+.+.+-+-|.+|++.||...-.-+.++=. | .....++|.+.+++.....-+|+.|+.++..|...+ ...+ +
T Consensus 98 ILvcna~RkDLQHPNEyiRG~TLRFLckLkE---~-ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~-~~L~--p 170 (948)
T KOG1058|consen 98 ILVCNAYRKDLQHPNEYIRGSTLRFLCKLKE---P-ELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNF-EHLI--P 170 (948)
T ss_pred HHHHHHHhhhccCchHhhcchhhhhhhhcCc---H-HHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhh-hhhc--C
Confidence 3445666677899999999776666555533 3 245688999999999999999999999999988875 3333 3
Q ss_pred hHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHh---hhcCCcHHHHHHHHHHHHHHH
Q 006253 171 HVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCE---ATLSPEVKIRQAAFECLVAIS 247 (653)
Q Consensus 171 ~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~---~~~~~~~~~~~~~~~~l~~l~ 247 (653)
-.+.++..++.. +.++..+..|+-.|..+- . ..-+..+.. -+.+-++.....+++.+.+.+
T Consensus 171 DapeLi~~fL~~----e~DpsCkRNAFi~L~~~D--------~----ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~ 234 (948)
T KOG1058|consen 171 DAPELIESFLLT----EQDPSCKRNAFLMLFTTD--------P----ERALNYLLSNIDQIPSFNDSLQLVIVELIRKVC 234 (948)
T ss_pred ChHHHHHHHHHh----ccCchhHHHHHHHHHhcC--------H----HHHHHHHHhhHhhccCccHHHHHHHHHHHHHHH
Confidence 345555444422 667788877766655311 0 111222221 112223444445556666655
Q ss_pred HHhHHhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHH
Q 006253 248 STYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLE 327 (653)
Q Consensus 248 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 327 (653)
...+..-..| +..++..+...++.++..|...+.++... +..++...+.++..+.+
T Consensus 235 ~~~p~~~~~~----i~~i~~lL~stssaV~fEaa~tlv~lS~~--------------------p~alk~Aa~~~i~l~~k 290 (948)
T KOG1058|consen 235 LANPAEKARY----IRCIYNLLSSTSSAVIFEAAGTLVTLSND--------------------PTALKAAASTYIDLLVK 290 (948)
T ss_pred hcCHHHhhHH----HHHHHHHHhcCCchhhhhhcceEEEccCC--------------------HHHHHHHHHHHHHHHHh
Confidence 5444333333 34444555555666665555444444321 13344444444444432
Q ss_pred HhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHH
Q 006253 328 TLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLV 407 (653)
Q Consensus 328 ~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l 407 (653)
+.| .++...-.+-|..+. ...+.++.-++--+...+++++..+|.-++...-.++.+- . +
T Consensus 291 -----esd-------nnvklIvldrl~~l~-~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssr---N----v 350 (948)
T KOG1058|consen 291 -----ESD-------NNVKLIVLDRLSELK-ALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSR---N----V 350 (948)
T ss_pred -----ccC-------cchhhhhHHHHHHHh-hhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhc---c----H
Confidence 111 122222222222222 1123444433334446678888888887776655566542 2 3
Q ss_pred HHHHHHHHHHhc------CCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc-hhhHHHHHHHH
Q 006253 408 NIALNFMLTALM------QDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGA 480 (653)
Q Consensus 408 ~~l~~~ll~~l~------~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~a 480 (653)
.+++..+.+.+. +|.+..-|+.-...+...+-.++ .+-..+++.+++.+.| |+.........
T Consensus 351 ediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp-----------~~aatvV~~ll~fisD~N~~aas~vl~F 419 (948)
T KOG1058|consen 351 EDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFP-----------EVAATVVSLLLDFISDSNEAAASDVLMF 419 (948)
T ss_pred HHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCh-----------HHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 344444444441 23344567777777777766654 4667888888898887 55444444444
Q ss_pred HHHHHhc
Q 006253 481 LYFLAQG 487 (653)
Q Consensus 481 l~~~~~~ 487 (653)
+...++.
T Consensus 420 vrE~iek 426 (948)
T KOG1058|consen 420 VREAIEK 426 (948)
T ss_pred HHHHHHh
Confidence 4444444
No 89
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=98.16 E-value=0.0012 Score=62.25 Aligned_cols=246 Identities=15% Similarity=0.159 Sum_probs=157.5
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCCh
Q 006253 135 ALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSND 214 (653)
Q Consensus 135 ~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~ 214 (653)
.|-..+.++++..|..|+.+|+.+++.++++.+....+.-++..+...+. | ...-..+++++..++.. + .+..
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~--D--~~~~~~~l~gl~~L~~~-~-~~~~- 75 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLD--D--HACVQPALKGLLALVKM-K-NFSP- 75 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhc--c--HhhHHHHHHHHHHHHhC-c-CCCh-
Confidence 45667889999999999999999999996666756677778888887775 3 22333347777776632 1 1111
Q ss_pred hHHHHHHHHHHhhhc--CCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhh-cCChhHHHHHHHhHHHhhHHH
Q 006253 215 MERDYIMRVVCEATL--SPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVR-EDEEPVALQAIEFWSSVCDEE 291 (653)
Q Consensus 215 ~~~~~il~~l~~~~~--~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~ 291 (653)
.....+++.+++... ..-...|..+++.+..+++.+...+...-..++..+++.+. +.||+--..+++++..+...-
T Consensus 76 ~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~ 155 (262)
T PF14500_consen 76 ESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEF 155 (262)
T ss_pred hhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhc
Confidence 112456666655332 23457899999999999998876665444567777777666 468887778888777766531
Q ss_pred HhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhh----hccCCccCCCccccHhhhHHHHHHHHHhhc--CCCch
Q 006253 292 IDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLL----KQEEDQDQDEGAWNIAMAGGTCLGLVARTV--GDDIV 365 (653)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~----~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~--~~~~~ 365 (653)
. +.+..+.+.+.+.-+-. ...+|+ +. ....+.-..+-.++ ...+.
T Consensus 156 --------------------~-~~~~~e~lFd~~~cYFPI~F~pp~~dp------~~--IT~edLk~~L~~cl~s~~~fa 206 (262)
T PF14500_consen 156 --------------------D-ISEFAEDLFDVFSCYFPITFRPPPNDP------YG--ITREDLKRALRNCLSSTPLFA 206 (262)
T ss_pred --------------------c-cchhHHHHHHHhhheeeeeeeCCCCCC------CC--CCHHHHHHHHHHHhcCcHhhH
Confidence 1 12333333443332211 111221 11 11122222333333 34667
Q ss_pred hchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHH
Q 006253 366 PLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLT 416 (653)
Q Consensus 366 ~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~ 416 (653)
|..+|++.+-+.++...+|..++..+...++..+...+.+|...+...+..
T Consensus 207 ~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk~ 257 (262)
T PF14500_consen 207 PFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALKF 257 (262)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 889999999999888889999999998888766656677777777666543
No 90
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.16 E-value=9e-05 Score=72.17 Aligned_cols=165 Identities=15% Similarity=0.201 Sum_probs=125.6
Q ss_pred CccchHHHHHHHHHhccc--hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccchhchHHHHHH
Q 006253 452 NQGNCQQIISVLLQSMKD--VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYE 529 (653)
Q Consensus 452 ~~~~~~~il~~l~~~l~d--~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~ 529 (653)
-.+++..++-.+++.+.| +...+.-|.+.|..+|++ .++.+..+.+..+..++....+++ +..++.+.=.
T Consensus 323 Weq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~------Q~~~l~DstE~ai~K~Leaa~ds~--~~v~~~Aeed 394 (516)
T KOG2956|consen 323 WEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTN------QPARLFDSTEIAICKVLEAAKDSQ--DEVMRVAEED 394 (516)
T ss_pred HHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHh------chHhhhchHHHHHHHHHHHHhCCc--hhHHHHHHHH
Confidence 357889999999999997 467788899999999985 467788888888888888887776 4567755556
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHhHHHHHHHHhCCCcchhhHhhHhHHHH
Q 006253 530 TLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQM 609 (653)
Q Consensus 530 ~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~i 609 (653)
|+..+.+..|.... ..+.|.++. .|++-. + .++.++..++..+..+. ..+.++.+
T Consensus 395 ~~~~las~~P~~~I---~~i~~~Ilt------------~D~~~~---~--~~iKm~Tkl~e~l~~Ee-----L~~ll~di 449 (516)
T KOG2956|consen 395 CLTTLASHLPLQCI---VNISPLILT------------ADEPRA---V--AVIKMLTKLFERLSAEE-----LLNLLPDI 449 (516)
T ss_pred HHHHHHhhCchhHH---HHHhhHHhc------------CcchHH---H--HHHHHHHHHHhhcCHHH-----HHHhhhhh
Confidence 66666777664322 222222211 233311 1 36778888888888765 88899999
Q ss_pred HHHHHHHHhccCcchhhhHHHHHHHHHHHhc-cCCccc-hhh
Q 006253 610 MGLFLRVFAIRSATAHEEAMLAIGALAYATG-LWRIRY-CLI 649 (653)
Q Consensus 610 ~~~l~~~l~~~~~~~~e~~~~~~~~l~~~~~-~~f~~y-~~i 649 (653)
.+.+++...+.+..+|+.+..|+..|...+| .++.|| .++
T Consensus 450 aP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~L 491 (516)
T KOG2956|consen 450 APCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQL 491 (516)
T ss_pred hhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhc
Confidence 9999999999999999999999999999999 999999 443
No 91
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.12 E-value=0.016 Score=59.47 Aligned_cols=143 Identities=18% Similarity=0.186 Sum_probs=102.6
Q ss_pred HHHHHHHh-cCCChHHHHHHHHHHHHHHhhCcchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhcc
Q 006253 5 VTQILLNA-QSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWL 83 (653)
Q Consensus 5 l~~ll~~~-~s~d~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~ 83 (653)
+..+-..+ .+.|+..|.+||..|.++..+ |+.+..+.-++.. +..+.....|+..|-+.+.++ .
T Consensus 7 Le~lCk~LY~s~D~~~R~~AE~~L~e~s~s--peclskCqlll~~-gs~pYs~mlAst~L~Klvs~~------------t 71 (1082)
T KOG1410|consen 7 LESLCKDLYESTDPTARHRAEKALAELSES--PECLSKCQLLLER-GSYPYSQMLASTCLMKLVSRK------------T 71 (1082)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHccC--HHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHcCC------------C
Confidence 44444445 456999999999999999888 9999988888877 446777788888888878654 3
Q ss_pred CCChHHHHHHHHHHHHhcCCC----ChHHHHHHHHHHHHHHhhhcCC---C--CCchHHHHHHHhhcCCChhHHHHHHHH
Q 006253 84 SLDSSVKAQIKSFILKTLSSP----AHDARSTASQVVAKVAGIELPH---K--QWPELIGALLSNIHQLPPHTKQATLET 154 (653)
Q Consensus 84 ~l~~~~~~~i~~~ll~~l~~~----~~~vr~~~~~~l~~ia~~~~~~---~--~~~~l~~~l~~~l~~~~~~~~~~~l~~ 154 (653)
.++-+++-.|++-+++.+... .+-+-..+++.++.+.+..|-. + .+-+.+..+..-++.++.+.-.-+..+
T Consensus 72 ~lpl~qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~i 151 (1082)
T KOG1410|consen 72 PLPLEQRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQI 151 (1082)
T ss_pred CCcHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHH
Confidence 588999999999999999873 2678889999999998865432 1 233555555555555544444445555
Q ss_pred HHHHHhhh
Q 006253 155 LGYICEEV 162 (653)
Q Consensus 155 l~~l~~~~ 162 (653)
|..+..++
T Consensus 152 LsqLvqem 159 (1082)
T KOG1410|consen 152 LSQLVQEM 159 (1082)
T ss_pred HHHHHHHh
Confidence 55555443
No 92
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=98.10 E-value=0.00021 Score=77.08 Aligned_cols=209 Identities=16% Similarity=0.238 Sum_probs=156.4
Q ss_pred CCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhh
Q 006253 361 GDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEF 440 (653)
Q Consensus 361 ~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~ 440 (653)
+.++++.+-+.+...+.|++|+.|..|+-.+..+.+.........+...+...+-..+ .|.|..|...|+.+|..++..
T Consensus 247 ~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~-kDaN~~v~~~aa~~l~~ia~~ 325 (815)
T KOG1820|consen 247 RVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRL-KDANINVVMLAAQILELIAKK 325 (815)
T ss_pred hhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhc-cCcchhHHHHHHHHHHHHHHh
Confidence 4567788888888899999999999999999888876432344455555555665667 999999999999999999998
Q ss_pred hccCCCCccccCccchHHHHHHHHHhccc-hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccc
Q 006253 441 LHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAG 519 (653)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~ 519 (653)
+.. ....|...++|.++..+.+ ...++..+..++..++... .+..+.+.+...+....
T Consensus 326 lr~-------~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~------------~l~~~~~~I~e~lk~kn-- 384 (815)
T KOG1820|consen 326 LRP-------LFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNST------------PLSKMSEAILEALKGKN-- 384 (815)
T ss_pred cch-------hhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcc------------cHHHHHHHHHHHhcCCC--
Confidence 864 3678899999999999998 4788888888888887642 24555555555665553
Q ss_pred hhchHHHHHHHHHHHHHhcccc--cHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHhHHHHHHHHhCCCcc
Q 006253 520 ESRLRTAAYETLNEVVRCSTDE--TAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQ 597 (653)
Q Consensus 520 ~~~~~~~~~~~l~~l~~~~~~~--~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~ 597 (653)
+..+......++...+..+.. +..-...+.|.++...++. + ..+|..+.++++.+.+..|..-
T Consensus 385 -p~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~---------~----~~VR~Aa~e~~~~v~k~~Ge~~- 449 (815)
T KOG1820|consen 385 -PQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDT---------D----KDVRKAALEAVAAVMKVHGEEV- 449 (815)
T ss_pred -hhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCC---------c----HHHHHHHHHHHHHHHHHhhHHH-
Confidence 567778888888888888743 3456777778776654431 2 2578889999999999999763
Q ss_pred hhhHhhHhHHHHH
Q 006253 598 TKYVFMQYADQMM 610 (653)
Q Consensus 598 ~~~~~~~~~~~i~ 610 (653)
+..|+..+.
T Consensus 450 ----~~k~L~~~~ 458 (815)
T KOG1820|consen 450 ----FKKLLKDLD 458 (815)
T ss_pred ----HHHHHHhhc
Confidence 444555444
No 93
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=0.00082 Score=66.21 Aligned_cols=171 Identities=15% Similarity=0.153 Sum_probs=131.5
Q ss_pred HHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 006253 356 VARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLG 435 (653)
Q Consensus 356 l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~ 435 (653)
...+.++...+.++..+-....+..|..|......++.+..... -.-.+.+.+++..+.... .|++..+|..|+..|+
T Consensus 206 ~m~~~~~~~~~~il~q~~ss~ts~~~~~ritd~Af~ael~~~~~-l~~~~lL~s~~~~la~ka-~dp~a~~r~~a~r~L~ 283 (533)
T KOG2032|consen 206 FMACVQDLEMGKILAQLLSSITSEKENGRITDIAFFAELKRPKE-LDKTGLLGSVLLSLANKA-TDPSAKSRGMACRGLG 283 (533)
T ss_pred HHHhhCCccHHHHHhhcccccchhcccchHHHHHHHHHHhCccc-ccccccHHHHHHHHHHhc-cCchhHHHHHHHHHHH
Confidence 33333444455555544455556678889888888888876431 122245677777777777 8999999999999999
Q ss_pred HHHhhhccCCCCccccCccchHHHHHHHHHhccc--hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhc
Q 006253 436 RMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD--VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVT 513 (653)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d--~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l 513 (653)
+.....+. ....+.+.++..++.++.| +..|+..+..++..+.+... ...+.+|+-++--.+.+++
T Consensus 284 ~~as~~P~-------kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~-----~~~l~~~~l~ialrlR~l~ 351 (533)
T KOG2032|consen 284 NTASGAPD-------KVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKAS-----NDDLESYLLNIALRLRTLF 351 (533)
T ss_pred HHhccCcH-------HHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhh-----hcchhhhchhHHHHHHHHH
Confidence 99998653 3567888999999999886 58999999999999998754 4678899999999998988
Q ss_pred cccccchhchHHHHHHHHHHHHHhcccccH
Q 006253 514 HREDAGESRLRTAAYETLNEVVRCSTDETA 543 (653)
Q Consensus 514 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 543 (653)
.+.+ +++|..++..++.+....|..-.
T Consensus 352 ~se~---~~~R~aa~~Lfg~L~~l~g~~~e 378 (533)
T KOG2032|consen 352 DSED---DKMRAAAFVLFGALAKLAGGGWE 378 (533)
T ss_pred HhcC---hhhhhhHHHHHHHHHHHcCCCch
Confidence 7765 67999999999999998886443
No 94
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.08 E-value=0.026 Score=60.79 Aligned_cols=376 Identities=14% Similarity=0.169 Sum_probs=189.7
Q ss_pred HHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhh
Q 006253 148 KQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEA 227 (653)
Q Consensus 148 ~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~ 227 (653)
.+.++..|..+++... -.. .-.-..+++.++..|. ..+.++...++.+|..+.-+.... .......+++.+..+
T Consensus 266 lrv~~~lLlNLAed~~-ve~-kM~~~~iV~~Lv~~Ld--r~n~ellil~v~fLkkLSi~~ENK--~~m~~~giV~kL~kL 339 (708)
T PF05804_consen 266 LRVAFYLLLNLAEDPR-VEL-KMVNKGIVSLLVKCLD--RENEELLILAVTFLKKLSIFKENK--DEMAESGIVEKLLKL 339 (708)
T ss_pred HHHHHHHHHHHhcChH-HHH-HHHhcCCHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCHHHH--HHHHHcCCHHHHHHH
Confidence 3456666666666541 111 1223568888888887 567888888888888765432211 011123477888888
Q ss_pred hcCCcHHHHHHHHHHHHHHHHHhHHhhHHhHH--HHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCC
Q 006253 228 TLSPEVKIRQAAFECLVAISSTYYEKLAPYIQ--DIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGD 305 (653)
Q Consensus 228 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~--~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (653)
+..++.++...+++.|..+..... .++.+. .++|.+...+.+ +..+..++.++..++..+.
T Consensus 340 l~s~~~~l~~~aLrlL~NLSfd~~--~R~~mV~~GlIPkLv~LL~d--~~~~~val~iLy~LS~dd~------------- 402 (708)
T PF05804_consen 340 LPSENEDLVNVALRLLFNLSFDPE--LRSQMVSLGLIPKLVELLKD--PNFREVALKILYNLSMDDE------------- 402 (708)
T ss_pred hcCCCHHHHHHHHHHHHHhCcCHH--HHHHHHHCCCcHHHHHHhCC--CchHHHHHHHHHHhccCHh-------------
Confidence 888888899999999988776533 233332 467777766664 3455667777777765321
Q ss_pred CCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHH
Q 006253 306 SDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQRE 385 (653)
Q Consensus 306 ~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~ 385 (653)
++..+. ....+|.+++.+....+. .+... ++..+.+.-. ..|.
T Consensus 403 ----~r~~f~--~TdcIp~L~~~Ll~~~~~--------~v~~e-------------------liaL~iNLa~----~~rn 445 (708)
T PF05804_consen 403 ----ARSMFA--YTDCIPQLMQMLLENSEE--------EVQLE-------------------LIALLINLAL----NKRN 445 (708)
T ss_pred ----hHHHHh--hcchHHHHHHHHHhCCCc--------cccHH-------------------HHHHHHHHhc----CHHH
Confidence 111111 012344444433321110 00000 1111111111 1122
Q ss_pred HHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHH
Q 006253 386 AATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQ 465 (653)
Q Consensus 386 aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~ 465 (653)
|-+++ ++-+ ++.++... + +...+ ..++++.+++.+-+. .+..+.+.+..+..
T Consensus 446 aqlm~-----~g~g-------L~~L~~ra---~-~~~D~----lLlKlIRNiS~h~~~--------~k~~f~~~i~~L~~ 497 (708)
T PF05804_consen 446 AQLMC-----EGNG-------LQSLMKRA---L-KTRDP----LLLKLIRNISQHDGP--------LKELFVDFIGDLAK 497 (708)
T ss_pred HHHHH-----hcCc-------HHHHHHHH---H-hcccH----HHHHHHHHHHhcCch--------HHHHHHHHHHHHHH
Confidence 22111 2211 22223322 2 22221 123455566554321 22333344444444
Q ss_pred hcc--chhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHH--HHHHHHHHhccccccchhchHHHHHHHHHHHHHhcccc
Q 006253 466 SMK--DVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQ--EIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDE 541 (653)
Q Consensus 466 ~l~--d~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~--~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 541 (653)
.+. ++......+...++++.-. ......++. .++|.|.+.+..... +..+...++-.+|+++. ...
T Consensus 498 ~v~~~~~ee~~vE~LGiLaNL~~~-------~ld~~~ll~~~~llp~L~~~L~~g~~-~dDl~LE~Vi~~gtla~--d~~ 567 (708)
T PF05804_consen 498 IVSSGDSEEFVVECLGILANLTIP-------DLDWAQLLQEYNLLPWLKDLLKPGAS-EDDLLLEVVILLGTLAS--DPE 567 (708)
T ss_pred HhhcCCcHHHHHHHHHHHHhcccC-------CcCHHHHHHhCCHHHHHHHHhCCCCC-ChHHHHHHHHHHHHHHC--CHH
Confidence 443 2455555665556655421 123444453 578888888764433 23455566667776653 234
Q ss_pred cHHHHH--HHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHhHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhc
Q 006253 542 TAPMVM--QLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAI 619 (653)
Q Consensus 542 ~~~~~~--~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~ 619 (653)
+.+.+. .+++.+++.|+.. .+|.+. +++++-.+.+-+-.. .+++.+-. -.++...++..+.+
T Consensus 568 ~A~lL~~sgli~~Li~LL~~k-------qeDdE~-------VlQil~~f~~ll~h~-~tr~~ll~-~~~~~~ylidL~~d 631 (708)
T PF05804_consen 568 CAPLLAKSGLIPTLIELLNAK-------QEDDEI-------VLQILYVFYQLLFHE-ETREVLLK-ETEIPAYLIDLMHD 631 (708)
T ss_pred HHHHHHhCChHHHHHHHHHhh-------CchHHH-------HHHHHHHHHHHHcCh-HHHHHHHh-ccchHHHHHHHhcC
Confidence 555554 6777888887763 223221 222222232322222 12222221 13477888889998
Q ss_pred cCcchhhhHHHHHHHHHH
Q 006253 620 RSATAHEEAMLAIGALAY 637 (653)
Q Consensus 620 ~~~~~~e~~~~~~~~l~~ 637 (653)
++.++|+.+=.++.-++.
T Consensus 632 ~N~~ir~~~d~~Ldii~e 649 (708)
T PF05804_consen 632 KNAEIRKVCDNALDIIAE 649 (708)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 888898876666665554
No 95
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.04 E-value=0.036 Score=60.90 Aligned_cols=121 Identities=17% Similarity=0.248 Sum_probs=92.6
Q ss_pred HHHHHHHh---hcC-CCchhchHHHHHhhhcC----cchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCC
Q 006253 351 TCLGLVAR---TVG-DDIVPLVMPFVEENITK----QEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDP 422 (653)
Q Consensus 351 ~~L~~l~~---~~~-~~~~~~l~~~l~~~l~~----~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~ 422 (653)
+++..+++ ..| +..+..+.|++.+...+ +++..+.||..+++.++--. ..|...-+|.++..+.+++
T Consensus 899 d~i~~icE~eLl~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iS-----a~fces~l~llftimeksp 973 (1251)
T KOG0414|consen 899 DLISGICEKELLYGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCIS-----AEFCESHLPLLFTIMEKSP 973 (1251)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhh-----HHHHHHHHHHHHHHHhcCC
Confidence 44444444 236 56677777777776643 45889999999999987431 2445566788888885699
Q ss_pred chHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc-hhhHHHHHHHHHHHHHhc
Q 006253 423 NNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQG 487 (653)
Q Consensus 423 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~~ 487 (653)
+|+||..+..++|.++-.++ ..+.++-+.++..++| ++.||..|...+..++-+
T Consensus 974 ~p~IRsN~VvalgDlav~fp-----------nlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILn 1028 (1251)
T KOG0414|consen 974 SPRIRSNLVVALGDLAVRFP-----------NLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILN 1028 (1251)
T ss_pred Cceeeecchheccchhhhcc-----------cccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHh
Confidence 99999999999999998875 4677888899999998 799999999999988754
No 96
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.98 E-value=0.00085 Score=59.78 Aligned_cols=131 Identities=11% Similarity=0.140 Sum_probs=90.0
Q ss_pred ChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhccc
Q 006253 105 AHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMN 184 (653)
Q Consensus 105 ~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~ 184 (653)
++.+|..+..+++.++... | +....+++.+..++.|+++.+|..|+.++..++..- .+ ..-..++..+..++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~-~-~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d---~i--k~k~~l~~~~l~~l~ 73 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRY-P-NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILED---MI--KVKGQLFSRILKLLV 73 (178)
T ss_pred CHHHHHHHHHHHHHHHHhC-c-HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC---ce--eehhhhhHHHHHHHc
Confidence 4689999999999998764 5 355667889999999999999999999999987642 22 112334455556666
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhc--------CCcHHHHHHHHHHHHHHHH
Q 006253 185 ASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATL--------SPEVKIRQAAFECLVAISS 248 (653)
Q Consensus 185 ~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~--------~~~~~~~~~~~~~l~~l~~ 248 (653)
|+++++|..|..++..+..-- .+....+.+.+.+..+-. ..+.+-+..+++.+...+.
T Consensus 74 --D~~~~Ir~~A~~~~~e~~~~~----~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~ 139 (178)
T PF12717_consen 74 --DENPEIRSLARSFFSELLKKR----NPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFID 139 (178)
T ss_pred --CCCHHHHHHHHHHHHHHHHhc----cchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcC
Confidence 899999999999999866531 111222344444443332 2345566677777776665
No 97
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.98 E-value=0.022 Score=56.16 Aligned_cols=156 Identities=17% Similarity=0.197 Sum_probs=94.9
Q ss_pred CchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc------hhhHHHHHHHHHHHHHhcccCCCCCC
Q 006253 422 PNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD------VPNVAEKACGALYFLAQGFEDAISPS 495 (653)
Q Consensus 422 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d------~~~v~~~a~~al~~~~~~~~~~~~~~ 495 (653)
.+-+||.+|..+||++...... ..+..+..++..-...+.+ +-+|+=+||++++++.++-. .+
T Consensus 496 d~dkV~~navraLgnllQvlq~-------i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a----~~ 564 (728)
T KOG4535|consen 496 DKDKVKSNAVRALGNLLQFLQP-------IEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPA----LP 564 (728)
T ss_pred hhhhhhhHHHHHHhhHHHHHHH-------hhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCcc----cc
Confidence 3568999999999999887752 2344555555555444442 36899999999999998621 12
Q ss_pred CCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhHH
Q 006253 496 SPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQN 575 (653)
Q Consensus 496 ~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ 575 (653)
-.-.+..+.+.+.|..++.+.. +.++|..+..++....+..+ +...+.-.+..++..|....+-. .-.....+.
T Consensus 565 lq~~~wA~~~F~~L~~Lv~~~~--NFKVRi~AA~aL~vp~~re~--~~d~~~Lsw~~lv~aLi~s~~~v--~f~eY~~~D 638 (728)
T KOG4535|consen 565 LQTAPWASQAFNALTSLVTSCK--NFKVRIRAAAALSVPGKREQ--YGDQYALSWNALVTALQKSEDTI--DFLEYKYCD 638 (728)
T ss_pred ccCCCchHHHHHHHHHHHHHhc--cceEeehhhhhhcCCCCccc--chhHHhHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 2234678888888888888777 47889889888887766544 22333434444444443321100 000111223
Q ss_pred HHHHHHHhHHHHHHHHhCC
Q 006253 576 EIQGLLCGCLQVIIQKLGS 594 (653)
Q Consensus 576 ~l~~~~~~~i~~i~~~~~~ 594 (653)
+++..++.++..+..-..+
T Consensus 639 sl~~q~c~av~hll~la~S 657 (728)
T KOG4535|consen 639 SLRTQICQALIHLLSLASS 657 (728)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 4555566666555554443
No 98
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=0.0066 Score=56.66 Aligned_cols=296 Identities=16% Similarity=0.167 Sum_probs=170.8
Q ss_pred HHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccc---hhhHhHHHHHHHhcccCCCC
Q 006253 112 ASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVE---QDHVNKILTAVVQGMNASES 188 (653)
Q Consensus 112 ~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~---~~~~~~l~~~l~~~l~~~~~ 188 (653)
...|+-.+.+..+|-+.-|++.|.|..-+..++..++.-++.-++.+++.++..-.+ .-....+++.++.++. ..
T Consensus 63 cVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIg--ge 140 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIG--GE 140 (524)
T ss_pred HHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHc--CC
Confidence 555666777666665677999999999999999999999999999999987422221 1123568889999998 67
Q ss_pred CHHHHHHHHHHHHHHHHhh---hhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhH-HHHHHH
Q 006253 189 NNDVRLAATRALYNALGFA---QANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYI-QDIFNI 264 (653)
Q Consensus 189 ~~~vr~~a~~~l~~~~~~~---~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l-~~l~~~ 264 (653)
+.+|.++|++.+.++..+- .-.|..+.. +.. .+..+...-+.-.|..+++.+.++.+..+......- ..++..
T Consensus 141 ddeVAkAAiesikrialfpaaleaiFeSell-Ddl--hlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldl 217 (524)
T KOG4413|consen 141 DDEVAKAAIESIKRIALFPAALEAIFESELL-DDL--HLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDL 217 (524)
T ss_pred cHHHHHHHHHHHHHHHhcHHHHHHhcccccC-ChH--HHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHH
Confidence 8899999999999876531 111111000 000 001111112334566678888888777665433221 257777
Q ss_pred HHHHhhc-CChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccc
Q 006253 265 TAKAVRE-DEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAW 343 (653)
Q Consensus 265 ~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~ 343 (653)
+..-++. .|--++..++++...+++.+. ..+|..+ ..+++.+.+.+.-.+.|+ +
T Consensus 218 LeaElkGteDtLVianciElvteLaeteH-----------------greflaQ--eglIdlicnIIsGadsdP------f 272 (524)
T KOG4413|consen 218 LEAELKGTEDTLVIANCIELVTELAETEH-----------------GREFLAQ--EGLIDLICNIISGADSDP------F 272 (524)
T ss_pred HHHHhcCCcceeehhhHHHHHHHHHHHhh-----------------hhhhcch--hhHHHHHHHHhhCCCCCc------H
Confidence 7777776 566788899999999887641 1122211 134555666555333221 1
Q ss_pred cHhhhHHHHHHHHHhhcCC---------Cch---hchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcc-hHHHHHH
Q 006253 344 NIAMAGGTCLGLVARTVGD---------DIV---PLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKL-VPLVNIA 410 (653)
Q Consensus 344 ~~r~~a~~~L~~l~~~~~~---------~~~---~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~-~~~l~~l 410 (653)
....++--+.+.+|. ... +..+.-.-+++...++...++|+-++|.+.......++ -.--+.-
T Consensus 273 ----ekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppa 348 (524)
T KOG4413|consen 273 ----EKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPA 348 (524)
T ss_pred ----HHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChH
Confidence 112233333444432 112 22222233456667788899999999988765321111 0000111
Q ss_pred HHHHHHHhcCCCc-hHHHHHHHHHHHHHHhhhc
Q 006253 411 LNFMLTALMQDPN-NHVKDTTAWTLGRMFEFLH 442 (653)
Q Consensus 411 ~~~ll~~l~~d~~-~~vr~~a~~~l~~~~~~~~ 442 (653)
...++... .|.+ ..-..+++.+|..++....
T Consensus 349 aehllara-fdqnahakqeaaihaLaaIagelr 380 (524)
T KOG4413|consen 349 AEHLLARA-FDQNAHAKQEAAIHALAAIAGELR 380 (524)
T ss_pred HHHHHHHH-hcccccchHHHHHHHHHHhhcccc
Confidence 12222222 2333 3445677888888876553
No 99
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.94 E-value=0.046 Score=58.54 Aligned_cols=140 Identities=22% Similarity=0.207 Sum_probs=102.1
Q ss_pred ChhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhCcchHHHHHHHHHhc--CCCChhHHHHHHHHHhhhcchhhhhhHHHh
Q 006253 1 MSAEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVN--DEKPVESRKLAGLILKNALDAKEQHRKFEL 78 (653)
Q Consensus 1 m~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~--~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~ 78 (653)
|+.=+..++..+.+-|.+++|-.--.|..+.+.+| +...-.++.+.+ .++++.+|.+|...+...=.
T Consensus 53 mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P-~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~~---------- 121 (757)
T COG5096 53 MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKP-ELALLAVNTIQKDLQDPNEEIRGFALRTLSLLRV---------- 121 (757)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCH-HHHHHHHHHHHhhccCCCHHHHHHHHHHHHhcCh----------
Confidence 34445677777777788888888888888877654 433334444432 24678999999887766221
Q ss_pred hhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchH--HHHHHHhhcCCChhHHHHHHHHHH
Q 006253 79 VQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPEL--IGALLSNIHQLPPHTKQATLETLG 156 (653)
Q Consensus 79 ~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l--~~~l~~~l~~~~~~~~~~~l~~l~ 156 (653)
++....+.+.+.+++.++.+.||+.|+.|+..+.+.+ + +.+++. ...+...+.+.+|.+...|+..+.
T Consensus 122 --------~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld-~-~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~ 191 (757)
T COG5096 122 --------KELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD-K-DLYHELGLIDILKELVADSDPIVIANALASLA 191 (757)
T ss_pred --------HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC-H-hhhhcccHHHHHHHHhhCCCchHHHHHHHHHH
Confidence 2344567778889999999999999999999999876 4 355544 556666677899999999999998
Q ss_pred HHHhh
Q 006253 157 YICEE 161 (653)
Q Consensus 157 ~l~~~ 161 (653)
.+...
T Consensus 192 ~i~~e 196 (757)
T COG5096 192 EIDPE 196 (757)
T ss_pred Hhchh
Confidence 87665
No 100
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.90 E-value=0.0011 Score=67.47 Aligned_cols=173 Identities=18% Similarity=0.146 Sum_probs=116.4
Q ss_pred ccHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCC-CC----CcchHHHHHHHHHHHHH
Q 006253 343 WNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGP-SP----EKLVPLVNIALNFMLTA 417 (653)
Q Consensus 343 ~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~-~~----~~~~~~l~~l~~~ll~~ 417 (653)
+++|..|.++|-.+++ |-+.-..+.....+.++|.+..+|.+|+.++...+.-+ .+ ..-....+..+..+...
T Consensus 212 ~~Vrt~A~eglL~L~e--g~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~ 289 (823)
T KOG2259|consen 212 FRVRTHAVEGLLALSE--GFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRA 289 (823)
T ss_pred cchHHHHHHHHHhhcc--cccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHH
Confidence 6899999999998887 54555566667777889999999999988776665543 11 11223466777888888
Q ss_pred hcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchH----------------------------------------
Q 006253 418 LMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQ---------------------------------------- 457 (653)
Q Consensus 418 l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------- 457 (653)
+ .|-+..||..|++++|.|.....+ ......-+
T Consensus 290 v-~D~sl~VRV~AaK~lG~~~~vSee------~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~ 362 (823)
T KOG2259|consen 290 V-RDRSLSVRVEAAKALGEFEQVSEE------IIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEED 362 (823)
T ss_pred H-hcCceeeeehHHHHhchHHHhHHH------HHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhc
Confidence 9 999999999999999887532210 00001111
Q ss_pred -----HHH-----HHHHHhccch-hhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccchhchHHH
Q 006253 458 -----QII-----SVLLQSMKDV-PNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTA 526 (653)
Q Consensus 458 -----~il-----~~l~~~l~d~-~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~ 526 (653)
.++ -+++.++.|. ..||.+|..+++.+.-. -..|...-+..|+.++++.- ..+|..
T Consensus 363 d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~s----------sP~FA~~aldfLvDMfNDE~---~~VRL~ 429 (823)
T KOG2259|consen 363 DEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATS----------SPGFAVRALDFLVDMFNDEI---EVVRLK 429 (823)
T ss_pred cccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcC----------CCCcHHHHHHHHHHHhccHH---HHHHHH
Confidence 111 2345555553 67888888888877753 12355666777777777664 567877
Q ss_pred HHHHHHHHHHh
Q 006253 527 AYETLNEVVRC 537 (653)
Q Consensus 527 ~~~~l~~l~~~ 537 (653)
++.++..++..
T Consensus 430 ai~aL~~Is~~ 440 (823)
T KOG2259|consen 430 AIFALTMISVH 440 (823)
T ss_pred HHHHHHHHHHH
Confidence 88888777766
No 101
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.89 E-value=0.0021 Score=63.07 Aligned_cols=194 Identities=13% Similarity=0.145 Sum_probs=130.0
Q ss_pred hhccCCChHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHhhhcCCCCCc----hHHHHHHHhhcC-CChhHHHHHHH
Q 006253 80 QRWLSLDSSVKAQIKSFILKTLSSPA-HDARSTASQVVAKVAGIELPHKQWP----ELIGALLSNIHQ-LPPHTKQATLE 153 (653)
Q Consensus 80 ~~~~~l~~~~~~~i~~~ll~~l~~~~-~~vr~~~~~~l~~ia~~~~~~~~~~----~l~~~l~~~l~~-~~~~~~~~~l~ 153 (653)
..|..-+-+.-..+++.|.+.=+++. .+-..+..++...+....+. .|. +++..+++.+++ .+...+..|++
T Consensus 275 ~~~~p~~~~~~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfs--vWeq~f~~iL~~l~EvL~d~~~~~~k~laLr 352 (516)
T KOG2956|consen 275 DQLTPNSVDQSALVADLLKEISGSERASERKEALSELPKMLCEGSFS--VWEQHFAEILLLLLEVLSDSEDEIIKKLALR 352 (516)
T ss_pred hhCCCCCcchhHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchh--HHHHHHHHHHHHHHHHHccchhhHHHHHHHH
Confidence 34554444555666666655555544 45555666677777665443 676 455556777777 68899999999
Q ss_pred HHHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHH-HhhhhhcCChhHHHHHHHHHHhhhcCCc
Q 006253 154 TLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNAL-GFAQANFSNDMERDYIMRVVCEATLSPE 232 (653)
Q Consensus 154 ~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~-~~~~~~~~~~~~~~~il~~l~~~~~~~~ 232 (653)
+|+.+++.- +..+ .......+..+++.-. |...++-..|-++....+ .+.+. .-+..+..++...|
T Consensus 353 vL~~ml~~Q-~~~l-~DstE~ai~K~Leaa~--ds~~~v~~~Aeed~~~~las~~P~---------~~I~~i~~~Ilt~D 419 (516)
T KOG2956|consen 353 VLREMLTNQ-PARL-FDSTEIAICKVLEAAK--DSQDEVMRVAEEDCLTTLASHLPL---------QCIVNISPLILTAD 419 (516)
T ss_pred HHHHHHHhc-hHhh-hchHHHHHHHHHHHHh--CCchhHHHHHHHHHHHHHHhhCch---------hHHHHHhhHHhcCc
Confidence 999999987 6666 5667777778888877 566665555555544433 33221 12222233333366
Q ss_pred HHHHHHHHHHHHHHHHHhH-HhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhh
Q 006253 233 VKIRQAAFECLVAISSTYY-EKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVC 288 (653)
Q Consensus 233 ~~~~~~~~~~l~~l~~~~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~ 288 (653)
......+++.+.++++... +.+...++++.|.+++...+....+|+.|+-.+..+.
T Consensus 420 ~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 420 EPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred chHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 6777788899999888764 4566778899999999999999999998886655544
No 102
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=0.057 Score=57.52 Aligned_cols=354 Identities=14% Similarity=0.167 Sum_probs=187.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHh-hcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchh
Q 006253 233 VKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAV-REDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCF 311 (653)
Q Consensus 233 ~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (653)
+..-..++-++..+++..+..-.++++.++....+.- ...++.....+.+.++.++..-.+ .+
T Consensus 481 ~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e----------------~P 544 (982)
T KOG2022|consen 481 LNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGE----------------HP 544 (982)
T ss_pred HHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhc----------------CC
Confidence 4455566777788887777666677777776654331 123667777777777777753210 11
Q ss_pred hHHHhhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCCchhchHHH---HHhhhcCcc--hhhHHH
Q 006253 312 YFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPF---VEENITKQE--WRQREA 386 (653)
Q Consensus 312 ~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~---l~~~l~~~~--~~~r~a 386 (653)
.+ ++.-+|.+++.+-..++ ...+...+..+++.++....|...++ +.+.+...+ ...|..
T Consensus 545 ~~----ln~sl~~L~~~Lh~sk~-----------s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~k 609 (982)
T KOG2022|consen 545 MY----LNPSLPLLFQGLHNSKE-----------SEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLK 609 (982)
T ss_pred cc----cCchHHHHHHHhcCchH-----------HHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHH
Confidence 23 33446677766532111 12455668889998887766655554 344444332 457888
Q ss_pred HHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCC------CchHHHHHHHHHHHHHHhhhccCCCC-------ccccC-
Q 006253 387 ATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQD------PNNHVKDTTAWTLGRMFEFLHGSTLE-------TPIIN- 452 (653)
Q Consensus 387 al~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d------~~~~vr~~a~~~l~~~~~~~~~~~~~-------~~~~~- 452 (653)
.+.++|.+.....++....|+..++..++..+ +. +.+.-+.+.+.-++.++..+.....+ +|...
T Consensus 610 lm~sIGyvls~~~pEe~~kyl~~lin~il~ql-e~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~ 688 (982)
T KOG2022|consen 610 LMKSIGYVLSRLKPEEIPKYLMKLINPILSQL-EINLAPGIDDQENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQRE 688 (982)
T ss_pred HHHHHHHHHHhccHHhHHHHHHHHHHHHHHHH-HHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhc
Confidence 89999998876555666778888877777666 32 23444444444555555444322211 11111
Q ss_pred --------ccchHHHHHHHHHhcc---chhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccchh
Q 006253 453 --------QGNCQQIISVLLQSMK---DVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGES 521 (653)
Q Consensus 453 --------~~~~~~il~~l~~~l~---d~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~ 521 (653)
..+...++|.+-+.+. .+..|.+.+|..+..=+..+. .....|+++.+++.+.+..+...
T Consensus 689 ~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~-----~sF~~p~l~~l~~Fi~r~~~~~~---- 759 (982)
T KOG2022|consen 689 EPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLL-----TSFPEPMLPSLCPFIVRFLTSCL---- 759 (982)
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhcccccc-----ccchhhhHHHHHHHHHHhccchH----
Confidence 1234455555555443 245677777776664444433 23337888888888888555432
Q ss_pred chHHHHHHHHH--HHHHhcccccHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHhHHHHHHHHhCCCcchh
Q 006253 522 RLRTAAYETLN--EVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTK 599 (653)
Q Consensus 522 ~~~~~~~~~l~--~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~ 599 (653)
. .+++... .++....+...|.+...+-..++.+-..+++...++ +.|.. ...+.++..+.+...+--.+
T Consensus 760 -a--~tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~f~n-~~Di~----~~~~~~v~~ilkk~P~~~~~- 830 (982)
T KOG2022|consen 760 -A--VTLSLIAACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQHPFSN-QPDIY----LQLIGFVRQILKKIPKFLEP- 830 (982)
T ss_pred -H--HHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccCCCC-CchHH----HHHHHHHHHHHHhCcCcccc-
Confidence 1 1222221 122222234556555555555555544554433222 12211 12455666666665543100
Q ss_pred hHhhHhHHHHHHHHHHHHhccCcchhhhHHHHHHHHHH
Q 006253 600 YVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAY 637 (653)
Q Consensus 600 ~~~~~~~~~i~~~l~~~l~~~~~~~~e~~~~~~~~l~~ 637 (653)
....|..-++......++.+.+.....+...|..++.
T Consensus 831 -~~~~~ts~i~~~a~~ll~~pE~~~i~aa~qF~t~~~~ 867 (982)
T KOG2022|consen 831 -SMLAFTSLILICAFILLNSPEPTTIRAASQFLTALAT 867 (982)
T ss_pred -chHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHh
Confidence 0222444455566677776544433444444444433
No 103
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.87 E-value=0.0016 Score=58.08 Aligned_cols=111 Identities=12% Similarity=0.096 Sum_probs=84.1
Q ss_pred ChhHHHHHHHHHhhhcchhhhhhHHHhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCch
Q 006253 52 PVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPE 131 (653)
Q Consensus 52 ~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~ 131 (653)
++.+|..+.+.++....+.+ ...+...+.+..+|.++++.||.++..+++.+...++- .....
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~----------------~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~i-k~k~~ 63 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP----------------NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMI-KVKGQ 63 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc----------------HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCce-eehhh
Confidence 36789999999998776432 23345667889999999999999999999999987754 23456
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHH
Q 006253 132 LIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVV 180 (653)
Q Consensus 132 l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~ 180 (653)
++..+..++.|+++.+|..|..++..+.....+..+ ...+..++..+.
T Consensus 64 l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i-~~~~~e~i~~l~ 111 (178)
T PF12717_consen 64 LFSRILKLLVDENPEIRSLARSFFSELLKKRNPNII-YNNFPELISSLN 111 (178)
T ss_pred hhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccchHH-HHHHHHHHHHHh
Confidence 668889999999999999999999998887435544 333444443333
No 104
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.85 E-value=0.057 Score=56.80 Aligned_cols=121 Identities=15% Similarity=0.112 Sum_probs=82.8
Q ss_pred ccHhhhHHHHHHHHHhhcCC---CchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcc--hHHHHHHHHHHHHH
Q 006253 343 WNIAMAGGTCLGLVARTVGD---DIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKL--VPLVNIALNFMLTA 417 (653)
Q Consensus 343 ~~~r~~a~~~L~~l~~~~~~---~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~--~~~l~~l~~~ll~~ 417 (653)
+...++..+++..++...++ ..+..+..++..+ ..+.-+...++-++..+ +... ..|+..++..+.
T Consensus 406 ~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDc------e~~~i~~rILhlLG~Eg-P~a~~Pskyir~iyNRvi-- 476 (865)
T KOG1078|consen 406 FEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDC------EFTQIAVRILHLLGKEG-PKAPNPSKYIRFIYNRVI-- 476 (865)
T ss_pred chHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhc------cchHHHHHHHHHHhccC-CCCCCcchhhHHHhhhhh--
Confidence 56677888888888886654 3345555555443 34566777788777654 2322 234544444432
Q ss_pred hcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc-hhhHHHHHHHHHHHHHh
Q 006253 418 LMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQ 486 (653)
Q Consensus 418 l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~ 486 (653)
| +|..||.+|..++.+|+.. .....+.+...+.+.+.| +..||.+|..++..+-+
T Consensus 477 L---En~ivRaaAv~alaKfg~~-----------~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 477 L---ENAIVRAAAVSALAKFGAQ-----------DVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred h---hhhhhHHHHHHHHHHHhcC-----------CCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence 3 7889999999999999822 234556777788888887 78999999999887763
No 105
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=97.85 E-value=0.00097 Score=72.10 Aligned_cols=189 Identities=12% Similarity=0.130 Sum_probs=147.8
Q ss_pred ccccHhhhHHHHHHHHHhhcC----CCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHH
Q 006253 341 GAWNIAMAGGTCLGLVARTVG----DDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLT 416 (653)
Q Consensus 341 ~~~~~r~~a~~~L~~l~~~~~----~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~ 416 (653)
..|.-|..|.+.+....+..+ ......+...+.-...|.|..+-.-++.+|..|+.+.+ ..+.+|...+.|.++.
T Consensus 265 ~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr-~~~~~~~~~v~p~lld 343 (815)
T KOG1820|consen 265 KKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLR-PLFRKYAKNVFPSLLD 343 (815)
T ss_pred cchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcc-hhhHHHHHhhcchHHH
Confidence 359999888877766665444 12334444455555678887787888889999998874 6688899999999999
Q ss_pred HhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc-hhhHHHHHHHHHHHHHhcccCCCCCC
Q 006253 417 ALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPS 495 (653)
Q Consensus 417 ~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~~~~~~~~~~ 495 (653)
.+ .+..+.+|.++..++-.++... .+..+++.+..++.+ +|.++..+...+.......++ .
T Consensus 344 ~l-kekk~~l~d~l~~~~d~~~ns~-------------~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~----~ 405 (815)
T KOG1820|consen 344 RL-KEKKSELRDALLKALDAILNST-------------PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP----K 405 (815)
T ss_pred Hh-hhccHHHHHHHHHHHHHHHhcc-------------cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC----c
Confidence 99 9999999999999998888733 456778888888887 899999999999998887652 2
Q ss_pred CCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhcccc-cHHHHHHHHH
Q 006253 496 SPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDE-TAPMVMQLVP 551 (653)
Q Consensus 496 ~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~l~~ 551 (653)
..-..-+..+++.+.+..++.+ ..+|.+++++++.+.+..|+. +..++..+-+
T Consensus 406 ~~~~~t~~~l~p~~~~~~~D~~---~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~~ 459 (815)
T KOG1820|consen 406 TVEKETVKTLVPHLIKHINDTD---KDVRKAALEAVAAVMKVHGEEVFKKLLKDLDK 459 (815)
T ss_pred CcchhhHHHHhHHHhhhccCCc---HHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcc
Confidence 3344567899999999998886 689999999999999999975 4556665554
No 106
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.85 E-value=0.041 Score=56.96 Aligned_cols=334 Identities=12% Similarity=0.104 Sum_probs=185.5
Q ss_pred chHHHHHHH----hhcCCChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHH
Q 006253 130 PELIGALLS----NIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALG 205 (653)
Q Consensus 130 ~~l~~~l~~----~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~ 205 (653)
.+++..+.+ -+.+.++...--|+.|++.+-+.- +......++ + ..|.+++...-||..|.-||.++..
T Consensus 106 ~dl~klvin~iknDL~srn~~fv~LAL~~I~niG~re----~~ea~~~DI-~---KlLvS~~~~~~vkqkaALclL~L~r 177 (938)
T KOG1077|consen 106 SDLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSRE----MAEAFADDI-P---KLLVSGSSMDYVKQKAALCLLRLFR 177 (938)
T ss_pred hHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHh----HHHHhhhhh-H---HHHhCCcchHHHHHHHHHHHHHHHh
Confidence 445444444 445668888788888887653321 211122222 2 3333335667899989888888765
Q ss_pred hhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHH
Q 006253 206 FAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWS 285 (653)
Q Consensus 206 ~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~ 285 (653)
-.++.+.. ..+.+-+..++++.+-.+-.++...+..++...++.....+..-+.-+.
T Consensus 178 ~spDl~~~----~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~------------------- 234 (938)
T KOG1077|consen 178 KSPDLVNP----GEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLS------------------- 234 (938)
T ss_pred cCccccCh----hhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHH-------------------
Confidence 44333222 3456666667776666666667777777776665443332222221111
Q ss_pred HhhHHH-HhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCCc
Q 006253 286 SVCDEE-IDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDI 364 (653)
Q Consensus 286 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~~ 364 (653)
.++... .+. .+|. -..++++-... +++-.| +... .++| ...|....+++..+.....+..
T Consensus 235 riv~~~~t~~-qdYT-----yy~vP~PWL~v----Kl~rlL-q~~p-~~~D-------~~~r~~l~evl~~iLnk~~~~~ 295 (938)
T KOG1077|consen 235 RIVVVVGTSL-QDYT-----YYFVPAPWLQV----KLLRLL-QIYP-TPED-------PSTRARLNEVLERILNKAQEPP 295 (938)
T ss_pred HHHhhcccch-hhce-----eecCCChHHHH----HHHHHH-HhCC-CCCC-------chHHHHHHHHHHHHHhccccCc
Confidence 111110 000 0000 00112221111 112222 2111 1221 3556666677777665543221
Q ss_pred hhchHHHHHhhhcCcc---hhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhh
Q 006253 365 VPLVMPFVEENITKQE---WRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFL 441 (653)
Q Consensus 365 ~~~l~~~l~~~l~~~~---~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~ 441 (653)
.+.+ ...+.|.++-.-+++-.. +.-...+.+.+..+-..+ .+.+..+|+-|+..+..++..-
T Consensus 296 ------------~~k~vq~~na~naVLFeaI~l~~h~--D~e~~ll~~~~~~Lg~fl-s~rE~NiRYLaLEsm~~L~ss~ 360 (938)
T KOG1077|consen 296 ------------KSKKVQHSNAKNAVLFEAISLAIHL--DSEPELLSRAVNQLGQFL-SHRETNIRYLALESMCKLASSE 360 (938)
T ss_pred ------------cccchHhhhhHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHh-hcccccchhhhHHHHHHHHhcc
Confidence 1111 123445555433333332 223345677788888888 8999999999998888887753
Q ss_pred ccCCCCccccCccchHHHHHHHHHhcc-c-hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccc
Q 006253 442 HGSTLETPIINQGNCQQIISVLLQSMK-D-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAG 519 (653)
Q Consensus 442 ~~~~~~~~~~~~~~~~~il~~l~~~l~-d-~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~ 519 (653)
. ..+-+..-...++..|+ + +..+|.+|...|-.+|+. .-...|+..|++.+...+
T Consensus 361 ~---------s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~------------~Nak~IV~elLqYL~tAd-- 417 (938)
T KOG1077|consen 361 F---------SIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDV------------SNAKQIVAELLQYLETAD-- 417 (938)
T ss_pred c---------hHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhch------------hhHHHHHHHHHHHHhhcc--
Confidence 3 22233333555566666 4 678999999999999974 346788888888887764
Q ss_pred hhchHHHHHHHHHHHHHhcccccHHHHHHHHHH
Q 006253 520 ESRLRTAAYETLNEVVRCSTDETAPMVMQLVPL 552 (653)
Q Consensus 520 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ 552 (653)
..+|+...--++.+++....+..=|++-+++.
T Consensus 418 -~sireeivlKvAILaEKyAtDy~WyVdviLqL 449 (938)
T KOG1077|consen 418 -YSIREEIVLKVAILAEKYATDYSWYVDVILQL 449 (938)
T ss_pred -hHHHHHHHHHHHHHHHHhcCCcchhHHHHHHH
Confidence 67888888888888887776665555554443
No 107
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.85 E-value=0.0026 Score=65.48 Aligned_cols=111 Identities=14% Similarity=0.199 Sum_probs=83.3
Q ss_pred CChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh--hhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhh
Q 006253 85 LDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAG--IELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEV 162 (653)
Q Consensus 85 l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~--~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~ 162 (653)
...+...++...++++..+++..||...+++++.+.. ...+...++.+...+...+.+-.|.+|..|..+|+.+=+.-
T Consensus 78 ~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~ 157 (892)
T KOG2025|consen 78 KEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDP 157 (892)
T ss_pred chhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCC
Confidence 4456777788888888889999999999999999876 33343456778888888889999999999999998865321
Q ss_pred cccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHH
Q 006253 163 SSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYN 202 (653)
Q Consensus 163 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~ 202 (653)
..+ -..+...+...+.+ ||+++||.+|+.++..
T Consensus 158 ~de------e~~v~n~l~~liqn-DpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 158 KDE------ECPVVNLLKDLIQN-DPSDEVRRAALSNISV 190 (892)
T ss_pred CCC------cccHHHHHHHHHhc-CCcHHHHHHHHHhhcc
Confidence 011 12244445555665 9999999999988764
No 108
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.84 E-value=1.4e-05 Score=55.41 Aligned_cols=54 Identities=28% Similarity=0.345 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc-hhhHHHHHHHHHHHH
Q 006253 424 NHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFL 484 (653)
Q Consensus 424 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~ 484 (653)
|.||.+|+++||+++...+. ...++.+.+++.|...+.| ++.||.+|+++|+++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~-------~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPE-------LLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHH-------HHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHH-------HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 68999999999998776653 3577999999999999997 689999999999864
No 109
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.81 E-value=0.00012 Score=56.68 Aligned_cols=84 Identities=25% Similarity=0.312 Sum_probs=65.0
Q ss_pred HHHHhhh-cCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCc
Q 006253 370 PFVEENI-TKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLET 448 (653)
Q Consensus 370 ~~l~~~l-~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~ 448 (653)
+.+.+.+ ++++|.+|..++.+++.+. -+..++.+...+ +|+++.||.+|+++||++..
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~-----------~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~i~~--------- 60 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELG-----------DPEAIPALIELL-KDEDPMVRRAAARALGRIGD--------- 60 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCT-----------HHHHHHHHHHHH-TSSSHHHHHHHHHHHHCCHH---------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC-----------CHhHHHHHHHHH-cCCCHHHHHHHHHHHHHhCC---------
Confidence 4555666 7899999999999999332 135678888999 99999999999999998753
Q ss_pred cccCccchHHHHHHHHHhccc--hhhHHHHHHHHHH
Q 006253 449 PIINQGNCQQIISVLLQSMKD--VPNVAEKACGALY 482 (653)
Q Consensus 449 ~~~~~~~~~~il~~l~~~l~d--~~~v~~~a~~al~ 482 (653)
+..++.|.+.+.+ +..||..|..+|+
T Consensus 61 --------~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 --------PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --------HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 2356777777775 4667888888874
No 110
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=97.76 E-value=0.042 Score=57.76 Aligned_cols=84 Identities=19% Similarity=0.263 Sum_probs=66.3
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhh-----CcchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhh
Q 006253 5 VTQILLNAQSVDGTVRKQAEESLKQYQEQ-----NLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELV 79 (653)
Q Consensus 5 l~~ll~~~~s~d~~~r~~A~~~L~~~~~~-----~~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~ 79 (653)
+..+|.++.||+..+|+..-+-|+++.+. +..=-+..|++...+++.+.-+|.++.++++..+.
T Consensus 25 L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~----------- 93 (501)
T PF13001_consen 25 LPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFD----------- 93 (501)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhh-----------
Confidence 46788889999999999999999887664 11223456777777766689999999999988775
Q ss_pred hhccCCChHHHHHHHHHHHHhcCC
Q 006253 80 QRWLSLDSSVKAQIKSFILKTLSS 103 (653)
Q Consensus 80 ~~~~~l~~~~~~~i~~~ll~~l~~ 103 (653)
.++.+.+..+.+.+++++..
T Consensus 94 ----Rl~~~e~~~llP~ll~~is~ 113 (501)
T PF13001_consen 94 ----RLDDEERRELLPSLLKGISK 113 (501)
T ss_pred ----cCCHHHHHHHHHHHHHhhcc
Confidence 37888888888999998874
No 111
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.75 E-value=0.00071 Score=71.50 Aligned_cols=150 Identities=15% Similarity=0.173 Sum_probs=118.0
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCC----CCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhccccc
Q 006253 92 QIKSFILKTLSSPAHDARSTASQVVAKVAGIELPH----KQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAV 167 (653)
Q Consensus 92 ~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~----~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~ 167 (653)
.|.+.+.+.+.+.+...|...-.+++.+.... |. +..|.++|.|+|+++-+|..+|-.++.++..+.... +..+
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~v-P~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~-~tL~ 944 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNV-PKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTES-ETLQ 944 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHhcC-CHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhc-cccc
Confidence 45566667777666677777777777777653 42 478999999999999999999999999999988887 6767
Q ss_pred chhhHhHHHHHHHhcccCCCCC-HHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHH
Q 006253 168 EQDHVNKILTAVVQGMNASESN-NDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVA 245 (653)
Q Consensus 168 ~~~~~~~l~~~l~~~l~~~~~~-~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~ 245 (653)
..|+..++|.++..-.+.+.+ ..||..|++|+..+..+.+..... .+++.++..+.+.+.|+..-+|+.+.++=..
T Consensus 945 -t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~-~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen 945 -TEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLL-SFRPLVLRALIKILDDKKRLVRKEAVDTRQN 1021 (1030)
T ss_pred -hHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccc-cccHHHHHHhhhccCcHHHHHHHHHHHHhhh
Confidence 789999999999776642332 679999999999988876643322 3678999999999988888889888775443
No 112
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.72 E-value=0.016 Score=59.85 Aligned_cols=160 Identities=11% Similarity=0.149 Sum_probs=94.2
Q ss_pred HHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhc
Q 006253 45 ELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIEL 124 (653)
Q Consensus 45 il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~ 124 (653)
|+.....+...+.+|+.++.++++. |..+. +.-.+.++.+..+++..||.++...|..+++..
T Consensus 28 il~~~kg~~k~K~Laaq~I~kffk~------------FP~l~----~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~- 90 (556)
T PF05918_consen 28 ILDGVKGSPKEKRLAAQFIPKFFKH------------FPDLQ----EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN- 90 (556)
T ss_dssp HHHGGGS-HHHHHHHHHHHHHHHCC-------------GGGH----HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--
T ss_pred HHHHccCCHHHHHHHHHHHHHHHhh------------ChhhH----HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH-
Confidence 3333334789999999999887763 33333 344566778888999999999999999999865
Q ss_pred CCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHH
Q 006253 125 PHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNAL 204 (653)
Q Consensus 125 ~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~ 204 (653)
| ...+.+.+.|.|+|+++++..+..+=.+|..+...- |. ..+..++..+... . ..+..+|..+++.+..-+
T Consensus 91 ~-~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d-~k----~tL~~lf~~i~~~-~--~~de~~Re~~lkFl~~kl 161 (556)
T PF05918_consen 91 P-EHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQD-PK----GTLTGLFSQIESS-K--SGDEQVRERALKFLREKL 161 (556)
T ss_dssp --T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH--HH----HHHHHHHHHHH------HS-HHHHHHHHHHHHHHG
T ss_pred H-HHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcC-cH----HHHHHHHHHHHhc-c--cCchHHHHHHHHHHHHHH
Confidence 4 245889999999999999887777777777666644 21 2233344333321 1 345779999999887654
Q ss_pred HhhhhhcCC-hh-HHHHHHHHHHhhhcC
Q 006253 205 GFAQANFSN-DM-ERDYIMRVVCEATLS 230 (653)
Q Consensus 205 ~~~~~~~~~-~~-~~~~il~~l~~~~~~ 230 (653)
.-+...... .. ....+...+...+++
T Consensus 162 ~~l~~~~~~p~~E~e~~i~~~ikkvL~D 189 (556)
T PF05918_consen 162 KPLKPELLTPQKEMEEFIVDEIKKVLQD 189 (556)
T ss_dssp GGS-TTTS---HHHHHHHHHHHHHHCTT
T ss_pred hhCcHHHhhchHHHHHHHHHHHHHHHHh
Confidence 433322222 11 123455555566654
No 113
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.69 E-value=0.034 Score=66.00 Aligned_cols=284 Identities=12% Similarity=0.123 Sum_probs=162.6
Q ss_pred ChhHHHHHHHHHhhhcchhhhhhHHHhhhhccCC-ChHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHHHhhhcC--CC
Q 006253 52 PVESRKLAGLILKNALDAKEQHRKFELVQRWLSL-DSSVKAQIKSFILKTLSS-PAHDARSTASQVVAKVAGIELP--HK 127 (653)
Q Consensus 52 ~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l-~~~~~~~i~~~ll~~l~~-~~~~vr~~~~~~l~~ia~~~~~--~~ 127 (653)
+..++.+|.-.||..-.+.-.. ..+ ....+..+.+.+...+.+ .+..+|..+..|+..+...... ..
T Consensus 1150 n~~va~fAidsLrQLs~kfle~---------eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkS 1220 (1780)
T PLN03076 1150 NLSIAIFAMDSLRQLSMKFLER---------EELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKS 1220 (1780)
T ss_pred chhHHHHHHHHHHHHHHHhcch---------hhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhc
Confidence 4678888888877744332110 001 112233333444444544 4579999999999988765432 24
Q ss_pred CCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccc---hhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHH
Q 006253 128 QWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVE---QDHVNKILTAVVQGMNASESNNDVRLAATRALYNAL 204 (653)
Q Consensus 128 ~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~---~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~ 204 (653)
-|..++..+-....+..+.....|..++..|+... -..+. ...+..++..+....++ ..+.++-..|+..|..+.
T Consensus 1221 GWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~-f~~l~~~~~~~F~DlV~cL~~Fa~q-~~~~nISL~AI~lL~~~~ 1298 (1780)
T PLN03076 1221 GWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREY-FPYITETETTTFTDCVNCLIAFTNS-RFNKDISLNAIAFLRFCA 1298 (1780)
T ss_pred CcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhh-hhhccccchhHHHHHHHHHHHHHhC-cCcccccHHHHHHHHHHH
Confidence 89999999998888888889999999999887764 22221 24566677666655543 334566666777777665
Q ss_pred Hhhhhh-c------------------------------CChhHHHHHHHHH---HhhhcCCcHHHHHHHHHHHHHHHHHh
Q 006253 205 GFAQAN-F------------------------------SNDMERDYIMRVV---CEATLSPEVKIRQAAFECLVAISSTY 250 (653)
Q Consensus 205 ~~~~~~-~------------------------------~~~~~~~~il~~l---~~~~~~~~~~~~~~~~~~l~~l~~~~ 250 (653)
.++-+. . ..+.....+++.| ..+..++++++|..+++.|-++...+
T Consensus 1299 ~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~y 1378 (1780)
T PLN03076 1299 TKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNH 1378 (1780)
T ss_pred HHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh
Confidence 443110 0 0000112345554 44456889999999999999999999
Q ss_pred HHhhHH-hH----HHHHHHHHHHhhcC-C----h---------hHHHHHHHhHH-HhhH----HHHhhhhhcCCCCCCCC
Q 006253 251 YEKLAP-YI----QDIFNITAKAVRED-E----E---------PVALQAIEFWS-SVCD----EEIDILEEYGGDFSGDS 306 (653)
Q Consensus 251 ~~~~~~-~l----~~l~~~~~~~~~~~-~----~---------~~~~~a~~~~~-~~~~----~~~~~~~~~~~~~~~~~ 306 (653)
+..|.+ +. ..++..++..++.. + + +--..-...|. +-+. ...++..
T Consensus 1379 G~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft---------- 1448 (1780)
T PLN03076 1379 GHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFV---------- 1448 (1780)
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHH----------
Confidence 877765 22 22222222222210 0 0 00000111221 1111 1111111
Q ss_pred CCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCCchhc
Q 006253 307 DIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPL 367 (653)
Q Consensus 307 ~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~ 367 (653)
..+..+...++.++..+..+++.. . -++.+.+..||..+....|..+-+.
T Consensus 1449 --~fFd~L~~~L~~~l~ll~~ci~q~-n--------~~la~ig~~~l~~li~~ng~~F~~~ 1498 (1780)
T PLN03076 1449 --KFYPTVNPLLKKVLMLLVSFIKRP-H--------QSLAGIGIAAFVRLMSNAGHLFSDE 1498 (1780)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHcCc-h--------HHHHHHHHHHHHHHHHHhhccCCHH
Confidence 122334556777777777777632 1 2677789999999998888766543
No 114
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.69 E-value=0.00014 Score=60.29 Aligned_cols=108 Identities=14% Similarity=0.205 Sum_probs=79.2
Q ss_pred hHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcC---CCchh-chHHHHHhhhcCcchhhHHHHHHHHHHhhc
Q 006253 321 LVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVG---DDIVP-LVMPFVEENITKQEWRQREAATYAFGSILE 396 (653)
Q Consensus 321 l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~---~~~~~-~l~~~l~~~l~~~~~~~r~aal~~l~~i~~ 396 (653)
+++.+++.|.+ .+|..|..+..+|..++...+ ..+.. .+++.+.+.+.++++.++..++++++.++.
T Consensus 8 ~i~~l~~~l~~---------~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~ 78 (120)
T cd00020 8 GLPALVSLLSS---------SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAA 78 (120)
T ss_pred ChHHHHHHHHc---------CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHcc
Confidence 45556665542 227889999999999987532 22222 566666677788889999999999999998
Q ss_pred CCCCCcchHHH-HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh
Q 006253 397 GPSPEKLVPLV-NIALNFMLTALMQDPNNHVKDTTAWTLGRMFE 439 (653)
Q Consensus 397 ~~~~~~~~~~l-~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~ 439 (653)
+.. ....... ..+++.+++.+ ++.+..+|..+++++.++++
T Consensus 79 ~~~-~~~~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 79 GPE-DNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred CcH-HHHHHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhhC
Confidence 742 2222223 24789999999 98999999999999998863
No 115
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=97.69 E-value=0.038 Score=56.47 Aligned_cols=310 Identities=14% Similarity=0.140 Sum_probs=170.6
Q ss_pred hhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHh----hhcC-CcHHHHHHHHHHH
Q 006253 169 QDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCE----ATLS-PEVKIRQAAFECL 243 (653)
Q Consensus 169 ~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~----~~~~-~~~~~~~~~~~~l 243 (653)
+++...++..++..+..+ .+ .--...++|+.+++...++.... ....+++.+.. ..++ .+|..-.-.++++
T Consensus 21 ~p~~~~ll~~Lf~~i~~~-~s-~ENeylMk~iMRvl~~~~e~~~p--~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi 96 (435)
T PF03378_consen 21 QPFAQQLLQNLFALIEKP-GS-AENEYLMKCIMRVLSVLQEDILP--IAVEILQHLTAILKEVSKNPSNPRFNHYLFESI 96 (435)
T ss_dssp TCCHHHHHHHHHHHHHTT--S-TC-HHHHHHHHHHHHHSTTTTGG--GHHHHHHHHHHHHHHHHTS---HHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhcC-CC-ccchHHHHHHHHHHHHhHHHHHH--HHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHH
Confidence 466778888888777631 11 22344677888777766554332 22445554443 3334 5788888889999
Q ss_pred HHHHHHhH----HhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhh
Q 006253 244 VAISSTYY----EKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALP 319 (653)
Q Consensus 244 ~~l~~~~~----~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 319 (653)
+.+++... +.+..+-+.++|.+...++.+-.++.-.+++.+..+.+..+ ..-+.+.+.
T Consensus 97 ~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~------------------~~~~p~~y~ 158 (435)
T PF03378_consen 97 GALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRP------------------SSPLPDAYK 158 (435)
T ss_dssp HHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--------------------S--TTTG
T ss_pred HHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC------------------CCCCcHHHH
Confidence 98888644 22334556788888888887767777888888888877431 011223334
Q ss_pred hhHHHHHHHhhhccCCccCCCccccHh---hhHHHHHHHHHhhcCC-----CchhchHHHHHhhhcCcchhhHHHHHHHH
Q 006253 320 VLVPLLLETLLKQEEDQDQDEGAWNIA---MAGGTCLGLVARTVGD-----DIVPLVMPFVEENITKQEWRQREAATYAF 391 (653)
Q Consensus 320 ~l~~~l~~~l~~~~ed~~~d~~~~~~r---~~a~~~L~~l~~~~~~-----~~~~~l~~~l~~~l~~~~~~~r~aal~~l 391 (653)
.++|.++. ...|..| .+....|..+....+. ..+..++..++..+.+.. .-.-++..+
T Consensus 159 ~L~~~Ll~------------p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~--~D~~gF~LL 224 (435)
T PF03378_consen 159 QLFPPLLS------------PALWERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKA--NDHYGFDLL 224 (435)
T ss_dssp GGHHHHTS------------GGGGGSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TT--CHHHHHHHH
T ss_pred HHHHHHcC------------cchhccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCC--cchHHHHHH
Confidence 55565542 1224322 2455566666655543 345567777777777653 224578899
Q ss_pred HHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCC--ccccCccchHHHHHHH-HHhcc
Q 006253 392 GSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLE--TPIINQGNCQQIISVL-LQSMK 468 (653)
Q Consensus 392 ~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~--~~~~~~~~~~~il~~l-~~~l~ 468 (653)
.++...+..+.+.+|++.++..++..+++..-...+...+..++-++-..+....- -.......+..++..+ +..+.
T Consensus 225 ~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~ 304 (435)
T PF03378_consen 225 ESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQ 304 (435)
T ss_dssp HHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGG
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchh
Confidence 99998886667899999999999999933444444444444444443322100000 0012333455555433 33333
Q ss_pred c--hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccc
Q 006253 469 D--VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHRED 517 (653)
Q Consensus 469 d--~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~ 517 (653)
. .+.-|..++.++.+++-.... -..........+++.+++++....
T Consensus 305 k~~~~~erKi~~vGltkLL~es~~---~~~~~~~~w~~ll~~Ll~ll~~p~ 352 (435)
T PF03378_consen 305 KVSGPIERKICAVGLTKLLCESPA---FLSEYSQLWPPLLEALLKLLERPP 352 (435)
T ss_dssp G--SHHHHHHHHHHHHHHHHSSTT---HHHH-CHHHHHHHHHHHHHHHTTS
T ss_pred hcCCcchhhHHHHHHHHHHhccHh---hhhHHHHHHHHHHHHHHHHHcCCc
Confidence 2 233355666667766533210 001134567778888888776443
No 116
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=0.023 Score=56.40 Aligned_cols=292 Identities=17% Similarity=0.175 Sum_probs=159.3
Q ss_pred hcCCCChHHHHHHHHHHHHHHhhhcCCCCC-----chHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhHhH
Q 006253 100 TLSSPAHDARSTASQVVAKVAGIELPHKQW-----PELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNK 174 (653)
Q Consensus 100 ~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~-----~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~ 174 (653)
.+.+..+...+.-..-++.+++...|...| -+++..+.+...+++...|..|+.+|+..+... |+.. ..|...
T Consensus 222 ~~ss~ts~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~-P~kv-~th~~~ 299 (533)
T KOG2032|consen 222 LLSSITSEKENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGA-PDKV-RTHKTT 299 (533)
T ss_pred cccccchhcccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccC-cHHH-HHhHHH
Confidence 333333344444444555555554442233 355666666677888899999999999999987 7766 677788
Q ss_pred HHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHH---HhhhcCCcHHHHHHHHHHHHHHHHHhH
Q 006253 175 ILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVV---CEATLSPEVKIRQAAFECLVAISSTYY 251 (653)
Q Consensus 175 l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l---~~~~~~~~~~~~~~~~~~l~~l~~~~~ 251 (653)
++..+..++-+ +.+.+|...++++|..+.+-..+. . ....++++- ..+..+.+++.|.+++..++.++...+
T Consensus 300 ~ldaii~gL~D-~~~~~V~leam~~Lt~v~~~~~~~-~---l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g 374 (533)
T KOG2032|consen 300 QLDAIIRGLYD-DLNEEVQLEAMKCLTMVLEKASND-D---LESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAG 374 (533)
T ss_pred HHHHHHHHHhc-CCccHHHHHHHHHHHHHHHhhhhc-c---hhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcC
Confidence 88888888875 456889999999999877644321 1 112334433 334456788999999999999888776
Q ss_pred HhhHHhHH-----HHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHH
Q 006253 252 EKLAPYIQ-----DIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLL 326 (653)
Q Consensus 252 ~~~~~~l~-----~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~ 326 (653)
...+...- .+.|+++ -+++..+.+.. |+.+..+.+. +++....+..+++...
T Consensus 375 ~~~e~~Fte~v~k~~~~lll-hl~d~~p~va~-ACr~~~~~c~---------------------p~l~rke~~~~~q~~l 431 (533)
T KOG2032|consen 375 GGWEEFFTEQVKKRLAPLLL-HLQDPNPYVAR-ACRSELRTCY---------------------PNLVRKELYHLFQESL 431 (533)
T ss_pred CCchhhhHHHHHhcccccee-eeCCCChHHHH-HHHHHHHhcC---------------------chhHHHHHHHHHhhhh
Confidence 43332221 2233322 24556665543 3333333331 0122221112222111
Q ss_pred HHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCCchhchHHHHHh---hhcCcch-hhHHHHHHHHHHhhcCCCCCc
Q 006253 327 ETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEE---NITKQEW-RQREAATYAFGSILEGPSPEK 402 (653)
Q Consensus 327 ~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~---~l~~~~~-~~r~aal~~l~~i~~~~~~~~ 402 (653)
+ . ...|. .......+..+ ..+.|.+.-++.. .+-+..| .+|.++...-+.......+..
T Consensus 432 d------------~--~~~~~--q~Fyn~~c~~L-~~i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l~~~~ 494 (533)
T KOG2032|consen 432 D------------T--DMARF--QAFYNQWCIQL-NHIHPDILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDSLVRAA 494 (533)
T ss_pred H------------H--hHHHH--HHHHHHHHHHH-hhhCHHHHHHHHHhchhheecchHHHHHHHHHHHHHHHHHhHHHH
Confidence 0 0 01111 01111111101 1122323332221 2335567 778877766666555432111
Q ss_pred chH-HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh
Q 006253 403 LVP-LVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFE 439 (653)
Q Consensus 403 ~~~-~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~ 439 (653)
... ....+...+-... +|+.|.++.++..+++.++.
T Consensus 495 c~~~d~~qL~~~ls~l~-~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 495 CSSADGLQLRSSLSTLW-RDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHHhhHHHHHHHHHHHc-cCCCchhHHHHHHHhhhHhh
Confidence 111 1234445554555 89999999999999998764
No 117
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.63 E-value=0.086 Score=54.72 Aligned_cols=214 Identities=10% Similarity=0.119 Sum_probs=119.7
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHhhCcch----HHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhh
Q 006253 4 EVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPG----FLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELV 79 (653)
Q Consensus 4 ~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~~~~----~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~ 79 (653)
+...+|...- ++....+-|-+.+-+|.+. +|+ .+..++.+.. +.+..+|..|..-|-.+.+.
T Consensus 24 ~y~~il~~~k-g~~k~K~Laaq~I~kffk~-FP~l~~~Ai~a~~DLcE--Ded~~iR~~aik~lp~~ck~---------- 89 (556)
T PF05918_consen 24 DYKEILDGVK-GSPKEKRLAAQFIPKFFKH-FPDLQEEAINAQLDLCE--DEDVQIRKQAIKGLPQLCKD---------- 89 (556)
T ss_dssp HHHHHHHGGG-S-HHHHHHHHHHHHHHHCC--GGGHHHHHHHHHHHHT---SSHHHHHHHHHHGGGG--T----------
T ss_pred HHHHHHHHcc-CCHHHHHHHHHHHHHHHhh-ChhhHHHHHHHHHHHHh--cccHHHHHHHHHhHHHHHHh----------
Confidence 4455566555 4677888888888888664 443 4445555544 45899999998888776653
Q ss_pred hhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q 006253 80 QRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYIC 159 (653)
Q Consensus 80 ~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~ 159 (653)
.++....|-+.|.++|.++++.-+..+-.++..+.+.+ |......++..+... .+.+..+|+.++..|..=+
T Consensus 90 ------~~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d-~k~tL~~lf~~i~~~-~~~de~~Re~~lkFl~~kl 161 (556)
T PF05918_consen 90 ------NPEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQD-PKGTLTGLFSQIESS-KSGDEQVRERALKFLREKL 161 (556)
T ss_dssp --------T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----HS-HHHHHHHHHHHHHHG
T ss_pred ------HHHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHhc-ccCchHHHHHHHHHHHHHH
Confidence 23445568889999999999888888889999999887 422334444444322 2567889999999887655
Q ss_pred hhhcccccc--hhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhh--hcCChhHHHHHHHHHHhhh------c
Q 006253 160 EEVSSDAVE--QDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQA--NFSNDMERDYIMRVVCEAT------L 229 (653)
Q Consensus 160 ~~~~~~~~~--~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~--~~~~~~~~~~il~~l~~~~------~ 229 (653)
..+.++.+. .+.-..++..+...|. |-.. .=+..+..++..++- ......-+..+++.+.... .
T Consensus 162 ~~l~~~~~~p~~E~e~~i~~~ikkvL~--DVTa----eEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~ 235 (556)
T PF05918_consen 162 KPLKPELLTPQKEMEEFIVDEIKKVLQ--DVTA----EEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFD 235 (556)
T ss_dssp GGS-TTTS---HHHHHHHHHHHHHHCT--T--H----HHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---
T ss_pred hhCcHHHhhchHHHHHHHHHHHHHHHH--hccH----HHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCC
Confidence 555456562 2223345555666666 4222 223344444443332 1122223456677665433 1
Q ss_pred CCcHHHHHHHHHHHHH
Q 006253 230 SPEVKIRQAAFECLVA 245 (653)
Q Consensus 230 ~~~~~~~~~~~~~l~~ 245 (653)
..|++.....+.|+..
T Consensus 236 ~sD~e~Idrli~C~~~ 251 (556)
T PF05918_consen 236 PSDPESIDRLISCLRQ 251 (556)
T ss_dssp SSSHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHH
Confidence 2345555556666554
No 118
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.62 E-value=0.067 Score=57.68 Aligned_cols=363 Identities=13% Similarity=0.107 Sum_probs=195.4
Q ss_pred HHHHHHHHHHhhhcCC--CCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhc-ccccchhhHhHHHHHHHhcccCCC
Q 006253 111 TASQVVAKVAGIELPH--KQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVS-SDAVEQDHVNKILTAVVQGMNASE 187 (653)
Q Consensus 111 ~~~~~l~~ia~~~~~~--~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~-~~~~~~~~~~~l~~~l~~~l~~~~ 187 (653)
.+..++..++...-.+ -.-.++++.|..++.+.+......++.+|..++-.-+ ...+ .-..+++.+...+. .
T Consensus 268 v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m---~~~giV~kL~kLl~--s 342 (708)
T PF05804_consen 268 VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEM---AESGIVEKLLKLLP--S 342 (708)
T ss_pred HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHH---HHcCCHHHHHHHhc--C
Confidence 5556677776532110 0225788999999998888888888888887755321 1111 12457888888887 5
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhH--HHHHHHH
Q 006253 188 SNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYI--QDIFNIT 265 (653)
Q Consensus 188 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l--~~l~~~~ 265 (653)
++.+++..++++|.++...- +. ........++|.+..++.++ ..+..++..|..+...... +..+ .+.+|.+
T Consensus 343 ~~~~l~~~aLrlL~NLSfd~-~~-R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~--r~~f~~TdcIp~L 416 (708)
T PF05804_consen 343 ENEDLVNVALRLLFNLSFDP-EL-RSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEA--RSMFAYTDCIPQL 416 (708)
T ss_pred CCHHHHHHHHHHHHHhCcCH-HH-HHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhh--HHHHhhcchHHHH
Confidence 67889999999999864211 00 00011123567777777644 4455566667666654321 1211 1456666
Q ss_pred HHHhh-cCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCcccc
Q 006253 266 AKAVR-EDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWN 344 (653)
Q Consensus 266 ~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~ 344 (653)
.+.+. ..++++....+.+...++..... ...+.+ ..-++.++....... |
T Consensus 417 ~~~Ll~~~~~~v~~eliaL~iNLa~~~rn----------------aqlm~~---g~gL~~L~~ra~~~~-D--------- 467 (708)
T PF05804_consen 417 MQMLLENSEEEVQLELIALLINLALNKRN----------------AQLMCE---GNGLQSLMKRALKTR-D--------- 467 (708)
T ss_pred HHHHHhCCCccccHHHHHHHHHHhcCHHH----------------HHHHHh---cCcHHHHHHHHHhcc-c---------
Confidence 55543 34555555555555555542210 000111 012233332211110 0
Q ss_pred HhhhHHHHHHHHHhhcCC---CchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCC-CCcchHHHH--HHHHHHHHHh
Q 006253 345 IAMAGGTCLGLVARTVGD---DIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPS-PEKLVPLVN--IALNFMLTAL 418 (653)
Q Consensus 345 ~r~~a~~~L~~l~~~~~~---~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~-~~~~~~~l~--~l~~~ll~~l 418 (653)
....+.+..++..-|. .+.+.+.+++. .+.+++ .-+..+-|+|.++.-.. .......+. .++|.+...|
T Consensus 468 --~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~-~v~~~~--~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L 542 (708)
T PF05804_consen 468 --PLLLKLIRNISQHDGPLKELFVDFIGDLAK-IVSSGD--SEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLL 542 (708)
T ss_pred --HHHHHHHHHHHhcCchHHHHHHHHHHHHHH-HhhcCC--cHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHh
Confidence 1233455555554431 12233333332 233332 22455666666654321 123444454 5788888777
Q ss_pred cCCC--chHHHHHHHHHHHHHHhhhccCCCCccccCccch--HHHHHHHHHhcc---chhhHHHHHHHHHHHHHhcccCC
Q 006253 419 MQDP--NNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNC--QQIISVLLQSMK---DVPNVAEKACGALYFLAQGFEDA 491 (653)
Q Consensus 419 ~~d~--~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~--~~il~~l~~~l~---d~~~v~~~a~~al~~~~~~~~~~ 491 (653)
... +..+.-.++-++|.++..-. ....+ ..+++.|++.+. ++.....+.+.++..++..-
T Consensus 543 -~~g~~~dDl~LE~Vi~~gtla~d~~---------~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~--- 609 (708)
T PF05804_consen 543 -KPGASEDDLLLEVVILLGTLASDPE---------CAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHE--- 609 (708)
T ss_pred -CCCCCChHHHHHHHHHHHHHHCCHH---------HHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcCh---
Confidence 432 33466666677777764321 11222 355666666665 24666678888888888641
Q ss_pred CCCCCCCchhH---HHHHHHHHHhccccccchhchHHHHHHHHHHHHHhcc
Q 006253 492 ISPSSPLTPFF---QEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCST 539 (653)
Q Consensus 492 ~~~~~~l~~~l---~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~ 539 (653)
....++ ..+...|+.++.+.+ ..+|..+=.++..+++..+
T Consensus 610 -----~tr~~ll~~~~~~~ylidL~~d~N---~~ir~~~d~~Ldii~e~d~ 652 (708)
T PF05804_consen 610 -----ETREVLLKETEIPAYLIDLMHDKN---AEIRKVCDNALDIIAEYDE 652 (708)
T ss_pred -----HHHHHHHhccchHHHHHHHhcCCC---HHHHHHHHHHHHHHHHhCH
Confidence 122222 356778888888764 6788888888888877665
No 119
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.61 E-value=0.0017 Score=60.72 Aligned_cols=221 Identities=12% Similarity=0.132 Sum_probs=127.4
Q ss_pred HHHHhhhc-CcchhhHHHHHHHHHHhhcCCCCCcchHHHH--HHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCC
Q 006253 370 PFVEENIT-KQEWRQREAATYAFGSILEGPSPEKLVPLVN--IALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTL 446 (653)
Q Consensus 370 ~~l~~~l~-~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~--~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~ 446 (653)
+.+...+. +.++..++.++.+++..+...... ..+. ..++.+...+ .++++.+|..|++++.+++.....
T Consensus 15 ~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq---~~Ir~~Ggi~lI~~lL-~~p~~~vr~~AL~aL~Nls~~~en--- 87 (254)
T PF04826_consen 15 QKLLCLLESTEDPFIQEKALIALGNSAAFPFNQ---DIIRDLGGISLIGSLL-NDPNPSVREKALNALNNLSVNDEN--- 87 (254)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhccChhHH---HHHHHcCCHHHHHHHc-CCCChHHHHHHHHHHHhcCCChhh---
Confidence 33334444 456889999999999876643111 1222 3578888889 999999999999999999876643
Q ss_pred CccccCccchHHHHHHHHHhcc--c-hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccchhch
Q 006253 447 ETPIINQGNCQQIISVLLQSMK--D-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRL 523 (653)
Q Consensus 447 ~~~~~~~~~~~~il~~l~~~l~--d-~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~ 523 (653)
...++..++.+.+... . +..++..+..+|.++.-. ......+...++.++.++...+ ..+
T Consensus 88 ------~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~--------~~~~~~l~~~i~~ll~LL~~G~---~~~ 150 (254)
T PF04826_consen 88 ------QEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVT--------NDYHHMLANYIPDLLSLLSSGS---EKT 150 (254)
T ss_pred ------HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCC--------cchhhhHHhhHHHHHHHHHcCC---hHH
Confidence 2334444444444333 2 578888888888888532 1223334455666777776654 467
Q ss_pred HHHHHHHHHHHHHhcccccHHH-HHHHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHhHHHHHHHHhCCCcch----
Q 006253 524 RTAAYETLNEVVRCSTDETAPM-VMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQT---- 598 (653)
Q Consensus 524 ~~~~~~~l~~l~~~~~~~~~~~-~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~---- 598 (653)
|..++.+|..+...-. ..... -.+.++.++..++. .++++. + -.++..+..|...+++....
T Consensus 151 k~~vLk~L~nLS~np~-~~~~Ll~~q~~~~~~~Lf~~--------~~~~~~---l-~~~l~~~~ni~~~~~~~~~~~~~~ 217 (254)
T PF04826_consen 151 KVQVLKVLVNLSENPD-MTRELLSAQVLSSFLSLFNS--------SESKEN---L-LRVLTFFENINENIKKEAYVFVQD 217 (254)
T ss_pred HHHHHHHHHHhccCHH-HHHHHHhccchhHHHHHHcc--------CCccHH---H-HHHHHHHHHHHHhhCcccceeccc
Confidence 7788888888855321 11111 11233344444443 223321 2 23666777777776655100
Q ss_pred ----hhHhhHh--HHHHHHHHHHHHhccCcchhhh
Q 006253 599 ----KYVFMQY--ADQMMGLFLRVFAIRSATAHEE 627 (653)
Q Consensus 599 ----~~~~~~~--~~~i~~~l~~~l~~~~~~~~e~ 627 (653)
.+.|.-| ...+-..+.......+.+||+.
T Consensus 218 ~~~~~~L~~~~~e~~~~~~~l~~l~~h~d~ev~~~ 252 (254)
T PF04826_consen 218 DFSEDSLFSLFGESSQLAKKLQALANHPDPEVKEQ 252 (254)
T ss_pred cCCchhHHHHHccHHHHHHHHHHHHcCCCHHHhhh
Confidence 1112111 2235555555555566677664
No 120
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.60 E-value=0.00013 Score=43.16 Aligned_cols=30 Identities=33% Similarity=0.505 Sum_probs=26.7
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHhh
Q 006253 410 ALNFMLTALMQDPNNHVKDTTAWTLGRMFEF 440 (653)
Q Consensus 410 l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~ 440 (653)
++|.+++.+ +|+++.||.+|++++|.+++.
T Consensus 1 llp~l~~~l-~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLL-NDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHH-T-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHc-CCCCHHHHHHHHHHHHHHHhh
Confidence 578899999 999999999999999999875
No 121
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.59 E-value=0.024 Score=57.33 Aligned_cols=243 Identities=14% Similarity=0.029 Sum_probs=147.1
Q ss_pred chHHHHHHHhhc-CCChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhh
Q 006253 130 PELIGALLSNIH-QLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQ 208 (653)
Q Consensus 130 ~~l~~~l~~~l~-~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 208 (653)
+..++.+...+. ++++.++..+..++.. . . ... .+..+...+. +.++.+|..+.++|+.+
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~----~-~----~~~---~~~~L~~~L~--d~~~~vr~aaa~ALg~i----- 113 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALLA----Q-E----DAL---DLRSVLAVLQ--AGPEGLCAGIQAALGWL----- 113 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHhc----c-C----ChH---HHHHHHHHhc--CCCHHHHHHHHHHHhcC-----
Confidence 456677777773 5566666554444421 1 0 111 2556667776 78888999999999851
Q ss_pred hhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhh
Q 006253 209 ANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVC 288 (653)
Q Consensus 209 ~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~ 288 (653)
.. ....+.|...+.+.++.+|..++..+...-. .-.+.+...+++.++.++..++..++.+.
T Consensus 114 ---~~----~~a~~~L~~~L~~~~p~vR~aal~al~~r~~-----------~~~~~L~~~L~d~d~~Vra~A~raLG~l~ 175 (410)
T TIGR02270 114 ---GG----RQAEPWLEPLLAASEPPGRAIGLAALGAHRH-----------DPGPALEAALTHEDALVRAAALRALGELP 175 (410)
T ss_pred ---Cc----hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-----------ChHHHHHHHhcCCCHHHHHHHHHHHHhhc
Confidence 11 3456667777788899999888866655111 11233445667899999999998877765
Q ss_pred HHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCCchhch
Q 006253 289 DEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLV 368 (653)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l 368 (653)
... .+|.|...+. + .+-.+|.+|..++..+.. +..
T Consensus 176 ~~~-----------------------------a~~~L~~al~--d-------~~~~VR~aA~~al~~lG~-------~~A 210 (410)
T TIGR02270 176 RRL-----------------------------SESTLRLYLR--D-------SDPEVRFAALEAGLLAGS-------RLA 210 (410)
T ss_pred ccc-----------------------------chHHHHHHHc--C-------CCHHHHHHHHHHHHHcCC-------HhH
Confidence 421 1223333222 1 123689988888865532 222
Q ss_pred HHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCc
Q 006253 369 MPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLET 448 (653)
Q Consensus 369 ~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~ 448 (653)
++.+......+.+..+......++.. + . +..++.+...+ +++. +|..+++++|.+...
T Consensus 211 ~~~l~~~~~~~g~~~~~~l~~~lal~--~-~--------~~a~~~L~~ll-~d~~--vr~~a~~AlG~lg~p-------- 268 (410)
T TIGR02270 211 WGVCRRFQVLEGGPHRQRLLVLLAVA--G-G--------PDAQAWLRELL-QAAA--TRREALRAVGLVGDV-------- 268 (410)
T ss_pred HHHHHHHHhccCccHHHHHHHHHHhC--C-c--------hhHHHHHHHHh-cChh--hHHHHHHHHHHcCCc--------
Confidence 23333323344444444333333322 1 1 14567777777 7655 999999999977542
Q ss_pred cccCccchHHHHHHHHHhccchhhHHHHHHHHHHHHHh
Q 006253 449 PIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQ 486 (653)
Q Consensus 449 ~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~al~~~~~ 486 (653)
..++.|++.+.+.+ ++..|..++..+.-
T Consensus 269 ---------~av~~L~~~l~d~~-~aR~A~eA~~~ItG 296 (410)
T TIGR02270 269 ---------EAAPWCLEAMREPP-WARLAGEAFSLITG 296 (410)
T ss_pred ---------chHHHHHHHhcCcH-HHHHHHHHHHHhhC
Confidence 24777778777544 88888888887764
No 122
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.57 E-value=0.0055 Score=64.64 Aligned_cols=233 Identities=13% Similarity=0.138 Sum_probs=149.1
Q ss_pred HHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCC
Q 006253 221 MRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGG 300 (653)
Q Consensus 221 l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 300 (653)
++.....+.++...++..++.-+..+++...+.-......++...+..+++.|.-+-..|+.....+|+-.+
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~-------- 800 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP-------- 800 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc--------
Confidence 333444555666778888999999999966443334456788888999999999888888888888887321
Q ss_pred CCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCCc---hhchHHHHHhhhc
Q 006253 301 DFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDI---VPLVMPFVEENIT 377 (653)
Q Consensus 301 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~~---~~~l~~~l~~~l~ 377 (653)
+.++|.+...-.... +......|....+++..++...|+-+ ...++..+..++.
T Consensus 801 ------------------e~il~dL~e~Y~s~k-----~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvr 857 (982)
T KOG4653|consen 801 ------------------EDILPDLSEEYLSEK-----KKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVR 857 (982)
T ss_pred ------------------hhhHHHHHHHHHhcc-----cCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcC
Confidence 134555544211000 00001224445588888888888643 4456666667777
Q ss_pred CcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchH
Q 006253 378 KQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQ 457 (653)
Q Consensus 378 ~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 457 (653)
+++-.-|-+++..+|.++.-.+ .....++.++...++.....|..+.||++|...+..+-...+....+ ....+..
T Consensus 858 epd~~~RaSS~a~lg~Lcq~~a-~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLp---ilr~~l~ 933 (982)
T KOG4653|consen 858 EPDHEFRASSLANLGQLCQLLA-FQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLP---ILRLLLI 933 (982)
T ss_pred CchHHHHHhHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHH---HHHHHHH
Confidence 8877778899999998876432 33444677777777777657899999999999988776654321000 0111233
Q ss_pred HHHHHHHHhccc--hhhHHHHHHHHHHHHHhcc
Q 006253 458 QIISVLLQSMKD--VPNVAEKACGALYFLAQGF 488 (653)
Q Consensus 458 ~il~~l~~~l~d--~~~v~~~a~~al~~~~~~~ 488 (653)
+....+.+...+ +..++..|+.++..+-..+
T Consensus 934 Dl~~tl~~~vr~~~dd~~klhaql~leei~a~l 966 (982)
T KOG4653|consen 934 DLDETLLSYVRQHDDDGLKLHAQLCLEEIQAAL 966 (982)
T ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHH
Confidence 444444444443 4567788888887665544
No 123
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.57 E-value=0.1 Score=52.19 Aligned_cols=283 Identities=20% Similarity=0.190 Sum_probs=168.9
Q ss_pred hHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 006253 37 GFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVV 116 (653)
Q Consensus 37 ~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l 116 (653)
.-...+.+.+.++ +..+|..|+..++..=. ....+.+.+.+.++++.+|..++.++
T Consensus 43 ~~~~~~~~~l~~~--~~~vr~~aa~~l~~~~~----------------------~~av~~l~~~l~d~~~~vr~~a~~aL 98 (335)
T COG1413 43 EAADELLKLLEDE--DLLVRLSAAVALGELGS----------------------EEAVPLLRELLSDEDPRVRDAAADAL 98 (335)
T ss_pred hhHHHHHHHHcCC--CHHHHHHHHHHHhhhch----------------------HHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 3555666777763 78899988888555221 22456778889999999999999976
Q ss_pred HHHHhhhcCCCCCchHHHHHHHhhc-CCChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhccc------CCCCC
Q 006253 117 AKVAGIELPHKQWPELIGALLSNIH-QLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMN------ASESN 189 (653)
Q Consensus 117 ~~ia~~~~~~~~~~~l~~~l~~~l~-~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~------~~~~~ 189 (653)
+.+. -+.-++.+...+. +++..+|..+..+|+.+-..- ....++..+..... .....
T Consensus 99 g~~~--------~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~--------a~~~l~~~l~~~~~~~a~~~~~~~~ 162 (335)
T COG1413 99 GELG--------DPEAVPPLVELLENDENEGVRAAAARALGKLGDER--------ALDPLLEALQDEDSGSAAAALDAAL 162 (335)
T ss_pred HccC--------ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh--------hhHHHHHHhccchhhhhhhhccchH
Confidence 6653 2456666677776 689999999999998653321 12222222221110 00122
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHh
Q 006253 190 NDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAV 269 (653)
Q Consensus 190 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~ 269 (653)
..+|..+...+..+- . ....+.+...+.+.+..+|..+...++.+.... ..+.+.+.+..
T Consensus 163 ~~~r~~a~~~l~~~~--------~----~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~ 222 (335)
T COG1413 163 LDVRAAAAEALGELG--------D----PEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKAL 222 (335)
T ss_pred HHHHHHHHHHHHHcC--------C----hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHh
Confidence 256777777766521 1 234555566666777789999999888876643 34555566777
Q ss_pred hcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccccHhhhH
Q 006253 270 REDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAG 349 (653)
Q Consensus 270 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a 349 (653)
.+.+..+|..++..++.+.... -.+.+...+.. ++|..+..+
T Consensus 223 ~~~~~~vr~~~~~~l~~~~~~~-----------------------------~~~~l~~~l~~---------~~~~~~~~~ 264 (335)
T COG1413 223 SDESLEVRKAALLALGEIGDEE-----------------------------AVDALAKALED---------EDVILALLA 264 (335)
T ss_pred cCCCHHHHHHHHHHhcccCcch-----------------------------hHHHHHHHHhc---------cchHHHHHH
Confidence 8888899888886555544311 11222222221 123334333
Q ss_pred HHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHH
Q 006253 350 GTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDT 429 (653)
Q Consensus 350 ~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~ 429 (653)
..+++ +.. .+.-...+...+.+.+|..|..+..+++.+..... ....+... .+....+|..
T Consensus 265 ~~~~~------~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~a~~~~~-~~~~~~~~~~ 325 (335)
T COG1413 265 AAALG------ALD-LAEAALPLLLLLIDEANAVRLEAALALGQIGQEKA-----------VAALLLAL-EDGDADVRKA 325 (335)
T ss_pred HHHhc------ccC-chhhHHHHHHHhhcchhhHHHHHHHHHHhhcccch-----------HHHHHHHh-cCCchhhHHH
Confidence 33332 111 22223333445677888999999999998887642 12233334 6677777777
Q ss_pred HHHHHHH
Q 006253 430 TAWTLGR 436 (653)
Q Consensus 430 a~~~l~~ 436 (653)
+...+..
T Consensus 326 ~~~~~~~ 332 (335)
T COG1413 326 ALILLEG 332 (335)
T ss_pred HHHHHHh
Confidence 7665543
No 124
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.56 E-value=0.13 Score=54.25 Aligned_cols=286 Identities=14% Similarity=0.149 Sum_probs=162.3
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhh
Q 006253 92 QIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDH 171 (653)
Q Consensus 92 ~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~ 171 (653)
.+++.+-.++.+....+--.+|.++..+.... + .....-+..|.-.++++....|.+|+++|..++-.. |... ...
T Consensus 245 ~~~~fl~s~l~~K~emV~~EaArai~~l~~~~-~-r~l~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~-P~~v-~~c 320 (865)
T KOG1078|consen 245 PLFPFLESCLRHKSEMVIYEAARAIVSLPNTN-S-RELAPAVSVLQLFLSSPKVALRFAAVRTLNKVAMKH-PQAV-TVC 320 (865)
T ss_pred hHHHHHHHHHhchhHHHHHHHHHHHhhccccC-H-hhcchHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhC-Cccc-ccc
Confidence 34555555667777777777787777766543 3 133446777788888999999999999999888776 5543 111
Q ss_pred HhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhH
Q 006253 172 VNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYY 251 (653)
Q Consensus 172 ~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~ 251 (653)
..++ ...++ |.+-.+...|+.++.. ... +...+.+++-+...+.+-+.+.+.-+.+.+..++..+|
T Consensus 321 N~el----E~lIt--d~NrsIat~AITtLLK---TG~-----e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp 386 (865)
T KOG1078|consen 321 NLDL----ESLIT--DSNRSIATLAITTLLK---TGT-----ESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFP 386 (865)
T ss_pred chhH----Hhhhc--ccccchhHHHHHHHHH---hcc-----hhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhcc
Confidence 1222 22333 5554555555555544 221 12234555555555555455555556666777666666
Q ss_pred HhhHHhHHHHHHHHHHHhhc-CChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhh
Q 006253 252 EKLAPYIQDIFNITAKAVRE-DEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLL 330 (653)
Q Consensus 252 ~~~~~~l~~l~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~ 330 (653)
..-. .+++++.+.+.+ ..-+.+...++.+..+.+..++ .+ . ..+..|+..+.
T Consensus 387 ~k~~----~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pd-----------------sK--e----~~L~~LCefIE 439 (865)
T KOG1078|consen 387 RKHT----VMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPD-----------------SK--E----RGLEHLCEFIE 439 (865)
T ss_pred HHHH----HHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcc-----------------hh--h----HHHHHHHHHHH
Confidence 4322 233333333333 3445666667766666653211 00 1 11223333332
Q ss_pred hccCCccCCCccccHhhhHHHHHHHHHhhcCCCchh-chHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHH
Q 006253 331 KQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVP-LVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNI 409 (653)
Q Consensus 331 ~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~-~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~ 409 (653)
| -..+..+...|+.++.-.+....| ..+.++-+.+-=.+..+|.+|..++..++.++ .... +.
T Consensus 440 ----D-------ce~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~--~~l~---~s 503 (865)
T KOG1078|consen 440 ----D-------CEFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQD--VVLL---PS 503 (865)
T ss_pred ----h-------ccchHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCC--CCcc---cc
Confidence 1 123446777777777766543333 23333333322245688999999999988543 2222 23
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHh
Q 006253 410 ALNFMLTALMQDPNNHVKDTTAWTLGRMFE 439 (653)
Q Consensus 410 l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~ 439 (653)
+...+.+++ .|....||.+|...+..+-.
T Consensus 504 I~vllkRc~-~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 504 ILVLLKRCL-NDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred HHHHHHHHh-cCchHHHHHHHHHHHHHhhh
Confidence 334455667 89999999999988887763
No 125
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.013 Score=54.86 Aligned_cols=254 Identities=12% Similarity=0.140 Sum_probs=144.7
Q ss_pred hHHHHHHHHHhhc-CCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHH----HHHHHHHHHHhcCCC
Q 006253 348 AGGTCLGLVARTV-GDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLV----NIALNFMLTALMQDP 422 (653)
Q Consensus 348 ~a~~~L~~l~~~~-~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l----~~l~~~ll~~l~~d~ 422 (653)
....||.++-+.. |..+.|.+++.++..+..++..++--++.-++.+.+.|+.+.+...+ .++++.++.++ ..+
T Consensus 62 lcVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcI-gge 140 (524)
T KOG4413|consen 62 LCVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCI-GGE 140 (524)
T ss_pred hHHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHH-cCC
Confidence 4678888887765 77889999999999999888889999999999999998755555543 36889999999 889
Q ss_pred chHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHH-----HH-HHhc--cchhhHHHHHHHHHHHHHhcccCCCCC
Q 006253 423 NNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIIS-----VL-LQSM--KDVPNVAEKACGALYFLAQGFEDAISP 494 (653)
Q Consensus 423 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~-----~l-~~~l--~d~~~v~~~a~~al~~~~~~~~~~~~~ 494 (653)
+-.|..+|...+.+++..-. -++.+++ .+ +..+ .-+.-+|.+....+..+... .
T Consensus 141 ddeVAkAAiesikrialfpa------------aleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSi-S----- 202 (524)
T KOG4413|consen 141 DDEVAKAAIESIKRIALFPA------------ALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSI-S----- 202 (524)
T ss_pred cHHHHHHHHHHHHHHHhcHH------------HHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhc-C-----
Confidence 99999999999999886432 1111111 00 0001 11222333433333333321 0
Q ss_pred CCCCchhH--HHHHHHHHHhccccccchhchHHHHHHHHHHHHHhc-ccccHHHHHHHHHHHHHHHHHHHHhhcCChhHH
Q 006253 495 SSPLTPFF--QEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCS-TDETAPMVMQLVPLIMMELHQTLEAQKLSSDER 571 (653)
Q Consensus 495 ~~~l~~~l--~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~ 571 (653)
+. ...++ ..++..|..-+..+. |.-++...++...+++..- |.+|.+- ..+++.+.+.+.. ++.|
T Consensus 203 pe-saneckkSGLldlLeaElkGte--DtLVianciElvteLaeteHgreflaQ-----eglIdlicnIIsG---adsd- 270 (524)
T KOG4413|consen 203 PE-SANECKKSGLLDLLEAELKGTE--DTLVIANCIELVTELAETEHGREFLAQ-----EGLIDLICNIISG---ADSD- 270 (524)
T ss_pred HH-HHhHhhhhhHHHHHHHHhcCCc--ceeehhhHHHHHHHHHHHhhhhhhcch-----hhHHHHHHHHhhC---CCCC-
Confidence 11 11222 244555555555443 3566777788888877543 3333332 1234444444321 1122
Q ss_pred HhHHHHHHHHHhHHHHHHHHhCCCcch---hhHhhHhHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHH
Q 006253 572 EKQNEIQGLLCGCLQVIIQKLGSSEQT---KYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYA 638 (653)
Q Consensus 572 ~~~~~l~~~~~~~i~~i~~~~~~~~~~---~~~~~~~~~~i~~~l~~~l~~~~~~~~e~~~~~~~~l~~~ 638 (653)
..+.+|. + --..+-+|+.... ...+..-..-.++-.++.....++...+.+..++|.+...
T Consensus 271 -Pfekfra--l---mgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSn 334 (524)
T KOG4413|consen 271 -PFEKFRA--L---MGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSN 334 (524)
T ss_pred -cHHHHHH--H---HHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCC
Confidence 2334542 2 2233333433100 0012222223344445555666777888888888887543
No 126
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.52 E-value=0.25 Score=58.98 Aligned_cols=365 Identities=14% Similarity=0.139 Sum_probs=199.1
Q ss_pred CCChHHHHHHHHHHHHhcCCC---ChHHHHHHHHHHHHHHhhhcCC--CCCchHHHHH----HHhhcCCChhHHHHHHHH
Q 006253 84 SLDSSVKAQIKSFILKTLSSP---AHDARSTASQVVAKVAGIELPH--KQWPELIGAL----LSNIHQLPPHTKQATLET 154 (653)
Q Consensus 84 ~l~~~~~~~i~~~ll~~l~~~---~~~vr~~~~~~l~~ia~~~~~~--~~~~~l~~~l----~~~l~~~~~~~~~~~l~~ 154 (653)
.++.+....+...|.+.-..+ ...-|.-.-+-+..++.+.... -.|+.+...+ .......+..++..|+..
T Consensus 1081 ~L~~eai~~fv~AL~~vS~eEl~~~~~pr~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAids 1160 (1780)
T PLN03076 1081 KLNSEAIIDFVKALCKVSMEELRSPSDPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDS 1160 (1780)
T ss_pred cCCHHHHHHHHHHHHHhhHHHHccCCCCchhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHH
Confidence 455555554444444431111 0112444444455555544321 2466644444 443344466777888888
Q ss_pred HHHHHhhhc-ccccch-hhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCc
Q 006253 155 LGYICEEVS-SDAVEQ-DHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPE 232 (653)
Q Consensus 155 l~~l~~~~~-~~~~~~-~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~ 232 (653)
|..++-.+- .+.+.. ..-+.++..+...+.+ ..+.++|...++|+.+++.-...++.. -|..++.++.....++.
T Consensus 1161 LrQLs~kfle~eEL~~f~FQkefLkPfe~im~~-s~~~eVrE~ILeCv~qmI~s~~~nIkS--GWktIF~VLs~aa~d~~ 1237 (1780)
T PLN03076 1161 LRQLSMKFLEREELANYNFQNEFMKPFVIVMRK-SNAVEIRELIIRCVSQMVLSRVNNVKS--GWKSMFMVFTTAAYDDH 1237 (1780)
T ss_pred HHHHHHHhcchhhhhchhHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhc--CcHHHHHHHHHHHhCcc
Confidence 877766541 111111 1123556666555554 567899999999999988654444332 35778888877777788
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhH----HhHHHHHHHHHHHhhc-CChhHHHHHHHhHHHhhHHHHhhhhhc---CCCC--
Q 006253 233 VKIRQAAFECLVAISSTYYEKLA----PYIQDIFNITAKAVRE-DEEPVALQAIEFWSSVCDEEIDILEEY---GGDF-- 302 (653)
Q Consensus 233 ~~~~~~~~~~l~~l~~~~~~~~~----~~l~~l~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~-- 302 (653)
+.+...+++.+..+++.+-..+. ..+..++..+...... .+.++...|++++..++....+..... ....
T Consensus 1238 e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~ 1317 (1780)
T PLN03076 1238 KNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEA 1317 (1780)
T ss_pred HHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhcccccccccccccc
Confidence 88999999999988876544322 2344455444433332 346777888888766654332110000 0000
Q ss_pred ---------CC--C-CCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCCchh----
Q 006253 303 ---------SG--D-SDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVP---- 366 (653)
Q Consensus 303 ---------~~--~-~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~---- 366 (653)
.+ . ..+........+. +|+|.. +...--| +.-.+|..|.+.|-.+....|..+-+
T Consensus 1318 ~~~~s~~~~~~~~~~~~~~~~~~~~~lW---~pLL~~-Ls~l~~D-----~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~ 1388 (1780)
T PLN03076 1318 PPSSPQSGKDGKQESGEFTDKDDHLYFW---FPLLAG-LSELSFD-----PRPEIRKSALQVLFDTLRNHGHLFSLPLWE 1388 (1780)
T ss_pred ccccccccccccccccccccchhHHHHH---HHHHHH-HHHHhcC-----CcHHHHHHHHHHHHHHHHHhhccCCHHHHH
Confidence 00 0 0000000111111 233222 1111011 12368999999888887777765433
Q ss_pred -----chHHHHHhhh---c--------------C------cchhhHHHHHHHHHHhhcCCC--CCcchHHHHHHHHHHHH
Q 006253 367 -----LVMPFVEENI---T--------------K------QEWRQREAATYAFGSILEGPS--PEKLVPLVNIALNFMLT 416 (653)
Q Consensus 367 -----~l~~~l~~~l---~--------------~------~~~~~r~aal~~l~~i~~~~~--~~~~~~~l~~l~~~ll~ 416 (653)
.++|++...- . + ..|- .++...+|..+++-.. -+.+...++.++..+..
T Consensus 1389 ~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl-~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ 1467 (1780)
T PLN03076 1389 RVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWL-YETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVS 1467 (1780)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444433210 0 0 1132 4566666666554321 13344567777777778
Q ss_pred HhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhcc
Q 006253 417 ALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMK 468 (653)
Q Consensus 417 ~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~ 468 (653)
+. ..+|..+-.....|+.++....+. ....+.+..++..+.+.+.
T Consensus 1468 ci-~q~n~~la~ig~~~l~~li~~ng~------~F~~~~W~~i~~~~~~lf~ 1512 (1780)
T PLN03076 1468 FI-KRPHQSLAGIGIAAFVRLMSNAGH------LFSDEKWLEVVLSLKEAAN 1512 (1780)
T ss_pred HH-cCchHHHHHHHHHHHHHHHHHhhc------cCCHHHHHHHHHHHHHHHH
Confidence 88 889999999999999999887762 3456777777777666554
No 127
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=97.52 E-value=0.0023 Score=56.01 Aligned_cols=140 Identities=16% Similarity=0.111 Sum_probs=110.1
Q ss_pred hHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc--hhhHHHHHHHHH
Q 006253 404 VPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD--VPNVAEKACGAL 481 (653)
Q Consensus 404 ~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d--~~~v~~~a~~al 481 (653)
+..++.....+.+.+ +++++.-|..++..++..++..+. .....+...++..++..++. .+.+...++.++
T Consensus 20 ~~~l~~l~~ri~~LL-~s~~~~~rw~G~~Ll~~~~~~~~~------e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L 92 (165)
T PF08167_consen 20 KSALHKLVTRINSLL-QSKSAYSRWAGLCLLKVTVEQCSW------EILLSHGSQWLRALLSILEKPDPPSVLEAAIITL 92 (165)
T ss_pred HHHHHHHHHHHHHHh-CCCChhhHHHHHHHHHHHHHHhhH------HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 345777888888999 999999999999999999988742 13456778888888888884 467888999999
Q ss_pred HHHHhcccCCC-CCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Q 006253 482 YFLAQGFEDAI-SPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMM 555 (653)
Q Consensus 482 ~~~~~~~~~~~-~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~ 555 (653)
..++....+.. ..++...|.++.+++.+++++++. .....+++++..++...+..|.||..++-..+..
T Consensus 93 ~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~~-----~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ 162 (165)
T PF08167_consen 93 TRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQDS-----SCPETALDALATLLPHHPTTFRPFANKIESALLS 162 (165)
T ss_pred HHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhcc-----ccHHHHHHHHHHHHHHCCccccchHHHHHHHHHH
Confidence 99998765420 123556799999999999998752 2456899999999999999999998876555544
No 128
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.49 E-value=0.091 Score=51.23 Aligned_cols=191 Identities=17% Similarity=0.142 Sum_probs=124.6
Q ss_pred hhcCCcHHHHHHHHHHHHHHHHHhH--HhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCC
Q 006253 227 ATLSPEVKIRQAAFECLVAISSTYY--EKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSG 304 (653)
Q Consensus 227 ~~~~~~~~~~~~~~~~l~~l~~~~~--~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 304 (653)
.+.+.....|.+++..+..+...++ +++..+...++..+.+.++....+-+..|...+.-++-.- +
T Consensus 51 ~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltl-------g----- 118 (309)
T PF05004_consen 51 LLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTL-------G----- 118 (309)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhc-------C-----
Confidence 3345568899999999998887653 5566667789999999988655444445555444443210 0
Q ss_pred CCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCCc--hhchHHHHH-----hhhc
Q 006253 305 DSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDI--VPLVMPFVE-----ENIT 377 (653)
Q Consensus 305 ~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~~--~~~l~~~l~-----~~l~ 377 (653)
...-...++..+.|.|...+... ......|.++..||+.++...+... ...+++.+. ....
T Consensus 119 -----~g~~~~ei~~~~~~~L~~~l~d~-------s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~ 186 (309)
T PF05004_consen 119 -----AGEDSEEIFEELKPVLKRILTDS-------SASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILK 186 (309)
T ss_pred -----CCccHHHHHHHHHHHHHHHHhCC-------ccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcC
Confidence 00113445556677777666522 1124577788888888777654322 221222222 1111
Q ss_pred -C---------cchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhc
Q 006253 378 -K---------QEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLH 442 (653)
Q Consensus 378 -~---------~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~ 442 (653)
+ ++..+.-+|+.+++-+...+....+...+...+|.+...| .+++..||-+|-.+|.-+.+...
T Consensus 187 ~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL-~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 187 SDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELL-DSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred cCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhh
Confidence 1 2356788999999988877644346667788899999999 99999999999999998887665
No 129
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.48 E-value=0.015 Score=54.98 Aligned_cols=234 Identities=15% Similarity=0.176 Sum_probs=148.6
Q ss_pred HHhhhcCcchhhHHHHHHHHHHhhcCCCCCcc-hHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccc
Q 006253 372 VEENITKQEWRQREAATYAFGSILEGPSPEKL-VPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPI 450 (653)
Q Consensus 372 l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~-~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 450 (653)
+...++++++..|.-|+.+|+.+.+...++.+ ...+.-++......+ .|. ..+..+ +..+..+...-.
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl-~D~-~~~~~~-l~gl~~L~~~~~-------- 72 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRL-DDH-ACVQPA-LKGLLALVKMKN-------- 72 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHh-ccH-hhHHHH-HHHHHHHHhCcC--------
Confidence 44678899999999999999998887643433 334566777778888 543 345444 677777763321
Q ss_pred cCccchHHHHHHHHHhccc---hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccchhchHHHH
Q 006253 451 INQGNCQQIISVLLQSMKD---VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAA 527 (653)
Q Consensus 451 ~~~~~~~~il~~l~~~l~d---~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~ 527 (653)
........++..+.+..+. ....|..+...+..+++... ..+...-+.++..++..+..+.. .+.+ ..+
T Consensus 73 ~~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~------~~l~~~~~~fv~~~i~~~~gEkD-PRnL-l~~ 144 (262)
T PF14500_consen 73 FSPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHR------EALQSMGDDFVYGFIQLIDGEKD-PRNL-LLS 144 (262)
T ss_pred CChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhH------HHHHhchhHHHHHHHHHhccCCC-HHHH-HHH
Confidence 2344567777777765552 25678888888888887643 23455566788888888876652 2344 367
Q ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHH---hhcCChhHH--HhHHHHHHHHHhHHHHHHHHhCCCcchhhHh
Q 006253 528 YETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLE---AQKLSSDER--EKQNEIQGLLCGCLQVIIQKLGSSEQTKYVF 602 (653)
Q Consensus 528 ~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~---~~~~~~~~~--~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~ 602 (653)
++.+..+++... ..++.+. +++.+..... .+. .+|+ -....++..+..|+. . -
T Consensus 145 F~l~~~i~~~~~--~~~~~e~----lFd~~~cYFPI~F~pp--~~dp~~IT~edLk~~L~~cl~-------s-------~ 202 (262)
T PF14500_consen 145 FKLLKVILQEFD--ISEFAED----LFDVFSCYFPITFRPP--PNDPYGITREDLKRALRNCLS-------S-------T 202 (262)
T ss_pred HHHHHHHHHhcc--cchhHHH----HHHHhhheeeeeeeCC--CCCCCCCCHHHHHHHHHHHhc-------C-------c
Confidence 777777776655 2344444 3333333221 111 1111 001134443444443 1 1
Q ss_pred hHhHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHhccC-Cccc
Q 006253 603 MQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGLW-RIRY 646 (653)
Q Consensus 603 ~~~~~~i~~~l~~~l~~~~~~~~e~~~~~~~~l~~~~~~~-f~~y 646 (653)
..|++-+++.++..|.++...++.+++.++...+..+|.. ..||
T Consensus 203 ~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~ 247 (262)
T PF14500_consen 203 PLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPH 247 (262)
T ss_pred HhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 2356678888999999988889999999999999999964 5566
No 130
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.48 E-value=0.074 Score=53.87 Aligned_cols=241 Identities=14% Similarity=0.072 Sum_probs=150.8
Q ss_pred HHHHHHHhcC-CCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhh
Q 006253 93 IKSFILKTLS-SPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDH 171 (653)
Q Consensus 93 i~~~ll~~l~-~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~ 171 (653)
....++..|. +++..++..++.++. ..+ -+..+..++..+.++++.+|.++...|+.+ +
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~---~~~-----~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i-----~------- 114 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALL---AQE-----DALDLRSVLAVLQAGPEGLCAGIQAALGWL-----G------- 114 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHh---ccC-----ChHHHHHHHHHhcCCCHHHHHHHHHHHhcC-----C-------
Confidence 4567788884 566777765443332 111 133489999999999999999999998742 1
Q ss_pred HhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhH
Q 006253 172 VNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYY 251 (653)
Q Consensus 172 ~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~ 251 (653)
.....+.+...+. +.++.+|..++.++...- ..-.+.+...+++.++.++..++.+++.+-...
T Consensus 115 ~~~a~~~L~~~L~--~~~p~vR~aal~al~~r~-------------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~- 178 (410)
T TIGR02270 115 GRQAEPWLEPLLA--ASEPPGRAIGLAALGAHR-------------HDPGPALEAALTHEDALVRAAALRALGELPRRL- 178 (410)
T ss_pred chHHHHHHHHHhc--CCChHHHHHHHHHHHhhc-------------cChHHHHHHHhcCCCHHHHHHHHHHHHhhcccc-
Confidence 1223344556666 788999999987776510 112344556667899999999999999865421
Q ss_pred HhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhh
Q 006253 252 EKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLK 331 (653)
Q Consensus 252 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~ 331 (653)
..+.+.....+.++.||..|+..+..+.... -++.+.....
T Consensus 179 ---------a~~~L~~al~d~~~~VR~aA~~al~~lG~~~-----------------------------A~~~l~~~~~- 219 (410)
T TIGR02270 179 ---------SESTLRLYLRDSDPEVRFAALEAGLLAGSRL-----------------------------AWGVCRRFQV- 219 (410)
T ss_pred ---------chHHHHHHHcCCCHHHHHHHHHHHHHcCCHh-----------------------------HHHHHHHHHh-
Confidence 2222345578899999999998776665321 1112222111
Q ss_pred ccCCccCCCccccHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHH
Q 006253 332 QEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIAL 411 (653)
Q Consensus 332 ~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~ 411 (653)
+. + +..+..+...+... |. +..++.+...+.++. +|.+++.++|.+.... .+
T Consensus 220 -~~------g-~~~~~~l~~~lal~----~~---~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p~-----------av 271 (410)
T TIGR02270 220 -LE------G-GPHRQRLLVLLAVA----GG---PDAQAWLRELLQAAA--TRREALRAVGLVGDVE-----------AA 271 (410)
T ss_pred -cc------C-ccHHHHHHHHHHhC----Cc---hhHHHHHHHHhcChh--hHHHHHHHHHHcCCcc-----------hH
Confidence 01 1 11222222222111 22 255666666776654 8999999999877642 35
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHh
Q 006253 412 NFMLTALMQDPNNHVKDTTAWTLGRMFE 439 (653)
Q Consensus 412 ~~ll~~l~~d~~~~vr~~a~~~l~~~~~ 439 (653)
+.++..+ .|+. ++..|-+++++++.
T Consensus 272 ~~L~~~l-~d~~--~aR~A~eA~~~ItG 296 (410)
T TIGR02270 272 PWCLEAM-REPP--WARLAGEAFSLITG 296 (410)
T ss_pred HHHHHHh-cCcH--HHHHHHHHHHHhhC
Confidence 7777778 6543 99999999998875
No 131
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.46 E-value=0.035 Score=55.57 Aligned_cols=249 Identities=21% Similarity=0.219 Sum_probs=152.7
Q ss_pred chHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhh
Q 006253 130 PELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQA 209 (653)
Q Consensus 130 ~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~ 209 (653)
+...+.+.+.+.++++.+|..+...++.+ .....++.+...+. +.++.+|..|..+++.+
T Consensus 42 ~~~~~~~~~~l~~~~~~vr~~aa~~l~~~------------~~~~av~~l~~~l~--d~~~~vr~~a~~aLg~~------ 101 (335)
T COG1413 42 PEAADELLKLLEDEDLLVRLSAAVALGEL------------GSEEAVPLLRELLS--DEDPRVRDAAADALGEL------ 101 (335)
T ss_pred hhhHHHHHHHHcCCCHHHHHHHHHHHhhh------------chHHHHHHHHHHhc--CCCHHHHHHHHHHHHcc------
Confidence 36778888888888888998888775431 23445666777777 78889999999987762
Q ss_pred hcCChhHHHHHHHHHHhhhc-CCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhcCC------------hhH
Q 006253 210 NFSNDMERDYIMRVVCEATL-SPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDE------------EPV 276 (653)
Q Consensus 210 ~~~~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~------------~~~ 276 (653)
.. ..-++.+...+. +++..+|..+...|..+-.... +.+ ++..+++.. ..+
T Consensus 102 --~~----~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a--~~~--------l~~~l~~~~~~~a~~~~~~~~~~~ 165 (335)
T COG1413 102 --GD----PEAVPPLVELLENDENEGVRAAAARALGKLGDERA--LDP--------LLEALQDEDSGSAAAALDAALLDV 165 (335)
T ss_pred --CC----hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhh--hHH--------HHHHhccchhhhhhhhccchHHHH
Confidence 11 234444444444 6889999999998888665432 111 122222222 134
Q ss_pred HHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHH
Q 006253 277 ALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLV 356 (653)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l 356 (653)
|..+...+..+.+. ...+.+...+.. ....+|..|..+|+.+
T Consensus 166 r~~a~~~l~~~~~~-----------------------------~~~~~l~~~l~~---------~~~~vr~~Aa~aL~~~ 207 (335)
T COG1413 166 RAAAAEALGELGDP-----------------------------EAIPLLIELLED---------EDADVRRAAASALGQL 207 (335)
T ss_pred HHHHHHHHHHcCCh-----------------------------hhhHHHHHHHhC---------chHHHHHHHHHHHHHh
Confidence 44444433333321 122333333321 1236888899888887
Q ss_pred HhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 006253 357 ARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGR 436 (653)
Q Consensus 357 ~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~ 436 (653)
.... ..+.+.+...+.+++|.+|..++.++|.+.... ..+.+...+ .+.+..++..+...++.
T Consensus 208 ~~~~-----~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~~~-----------~~~~l~~~l-~~~~~~~~~~~~~~~~~ 270 (335)
T COG1413 208 GSEN-----VEAADLLVKALSDESLEVRKAALLALGEIGDEE-----------AVDALAKAL-EDEDVILALLAAAALGA 270 (335)
T ss_pred hcch-----hhHHHHHHHHhcCCCHHHHHHHHHHhcccCcch-----------hHHHHHHHH-hccchHHHHHHHHHhcc
Confidence 6543 456677778889999999999999999776542 134555667 77888887777666651
Q ss_pred HHhhhccCCCCccccCccchHHHHHHHHHhccc-hhhHHHHHHHHHHHHHh
Q 006253 437 MFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQ 486 (653)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~ 486 (653)
+ .. ......+...+.+ +..++..+..++..+-.
T Consensus 271 ~----------------~~-~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 304 (335)
T COG1413 271 L----------------DL-AEAALPLLLLLIDEANAVRLEAALALGQIGQ 304 (335)
T ss_pred c----------------Cc-hhhHHHHHHHhhcchhhHHHHHHHHHHhhcc
Confidence 1 01 1112222333333 56777777777776654
No 132
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.45 E-value=0.00089 Score=70.80 Aligned_cols=149 Identities=15% Similarity=0.246 Sum_probs=116.9
Q ss_pred chHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhh
Q 006253 130 PELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQA 209 (653)
Q Consensus 130 ~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~ 209 (653)
-+++|.+.+...+.....|..-+.+|..++.+.+.+.+ -+.++.++|.++++++ -++..+|..+++++..++.-...
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vl-lp~~~~LlPLLLq~Ls--~~D~~v~vstl~~i~~~l~~~~t 942 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVL-LPQFPMLLPLLLQALS--MPDVIVRVSTLRTIPMLLTESET 942 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhh-ccchhhHHHHHHHhcC--CCccchhhhHhhhhhHHHHhccc
Confidence 47788888888866777788889999999998843444 5788999999999999 68889999999998886653222
Q ss_pred hcCChhHHHHHHHHHHhhhcCCc---HHHHHHHHHHHHHHHHHhH-HhhHHhHHHHHHHHHHHhhcCChhHHHHHHHh
Q 006253 210 NFSNDMERDYIMRVVCEATLSPE---VKIRQAAFECLVAISSTYY-EKLAPYIQDIFNITAKAVREDEEPVALQAIEF 283 (653)
Q Consensus 210 ~~~~~~~~~~il~~l~~~~~~~~---~~~~~~~~~~l~~l~~~~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~ 283 (653)
. ...+.+.++|.++.+..+++ -.+|..+++||..+.+..| ..+-+|-++++..+...+.|...-+|..|.+.
T Consensus 943 L--~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 943 L--QTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred c--chHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 1 12345678898888776654 6799999999999999554 55667888899888888888888888888853
No 133
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.24 Score=52.78 Aligned_cols=193 Identities=13% Similarity=0.138 Sum_probs=119.9
Q ss_pred HHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcC-CcHHHHHHHHHHHHHHHHHhHHhh
Q 006253 176 LTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLS-PEVKIRQAAFECLVAISSTYYEKL 254 (653)
Q Consensus 176 ~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~ 254 (653)
+..+++.+.+ ..++..+..|+.-|..++.+..+....-...+.++|.|..++++ .+++++..++++|.-+++..|+..
T Consensus 169 ~kkLL~gL~~-~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 169 AKKLLQGLQA-ESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHhccc-cCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 3455567765 44666676777777777766544322212246788999888875 579999999999999999998766
Q ss_pred HHhHH-HHHHHHHHHhhc-CChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhc
Q 006253 255 APYIQ-DIFNITAKAVRE-DEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQ 332 (653)
Q Consensus 255 ~~~l~-~l~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~ 332 (653)
.-.+. ..+|.++..+.. ..-++.+++++.+..+...++. ...+. ..|.. .+.+.
T Consensus 248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~------------------AiL~A--G~l~a----~Lsyl 303 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK------------------AILQA--GALSA----VLSYL 303 (1051)
T ss_pred heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH------------------HHHhc--ccHHH----HHHHH
Confidence 54443 467776665554 2346778888877777754321 00000 01111 11111
Q ss_pred cCCccCCCccccHhhhHHHHHHHHHhhcC-C--CchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCC
Q 006253 333 EEDQDQDEGAWNIAMAGGTCLGLVARTVG-D--DIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPS 399 (653)
Q Consensus 333 ~ed~~~d~~~~~~r~~a~~~L~~l~~~~~-~--~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~ 399 (653)
|- -+....+.|.......+.... + .++-..+|++...++..+-+..+.++.|+..+++++.
T Consensus 304 DF------FSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~ 367 (1051)
T KOG0168|consen 304 DF------FSIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQ 367 (1051)
T ss_pred HH------HHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcc
Confidence 10 001233444444444555443 3 3455677888888888888889999999999998763
No 134
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=0.021 Score=60.46 Aligned_cols=172 Identities=17% Similarity=0.235 Sum_probs=116.5
Q ss_pred HhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCc--chhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCC
Q 006253 345 IAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQ--EWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDP 422 (653)
Q Consensus 345 ~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~--~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~ 422 (653)
+.-.|.+.+..+++..++.++|.+.+.-.+.-... +...|-+ -+++.++...+ +-+..|...++...++.. +|+
T Consensus 784 vyLnaI~gv~~Lcevy~e~il~dL~e~Y~s~k~k~~~d~~lkVG--Eai~k~~qa~G-el~~~y~~~Li~tfl~gv-rep 859 (982)
T KOG4653|consen 784 VYLNAIRGVVSLCEVYPEDILPDLSEEYLSEKKKLQTDYRLKVG--EAILKVAQALG-ELVFKYKAVLINTFLSGV-REP 859 (982)
T ss_pred eeHHHHHHHHHHHHhcchhhHHHHHHHHHhcccCCCccceehHH--HHHHHHHHHhc-cHHHHHHHHHHHHHHHhc-CCc
Confidence 44567787888899999999998888554433222 3222322 45555555543 556678888999999999 899
Q ss_pred chHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhcc-c-hhhHHHHHHHHHHHHHhcccCCCCCCCCCch
Q 006253 423 NNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMK-D-VPNVAEKACGALYFLAQGFEDAISPSSPLTP 500 (653)
Q Consensus 423 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~-d-~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~ 500 (653)
..+.|..++..+|+++..... ...+++..++..++.... | ++-||.+|+..+..+....+ ..+.|
T Consensus 860 d~~~RaSS~a~lg~Lcq~~a~-------~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg------~dlLp 926 (982)
T KOG4653|consen 860 DHEFRASSLANLGQLCQLLAF-------QVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTG------EDLLP 926 (982)
T ss_pred hHHHHHhHHHHHHHHHHHHhh-------hhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccc------hhhHH
Confidence 999999999999999886642 235577888877777666 4 68899999999998888654 34556
Q ss_pred hH----HHHHHHHHHhccccccchhchHHHHHHHHHHHH
Q 006253 501 FF----QEIVQALLTVTHREDAGESRLRTAAYETLNEVV 535 (653)
Q Consensus 501 ~l----~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~ 535 (653)
++ -+....+.......+ +..++..+..|+..+-
T Consensus 927 ilr~~l~Dl~~tl~~~vr~~~--dd~~klhaql~leei~ 963 (982)
T KOG4653|consen 927 ILRLLLIDLDETLLSYVRQHD--DDGLKLHAQLCLEEIQ 963 (982)
T ss_pred HHHHHHHHHHHHHHHHHhcCc--hhHHHHHHHHHHHHHH
Confidence 33 344445555554444 3345555555555543
No 135
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.42 E-value=0.27 Score=52.99 Aligned_cols=166 Identities=12% Similarity=0.087 Sum_probs=113.6
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHH
Q 006253 187 ESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITA 266 (653)
Q Consensus 187 ~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~ 266 (653)
..+...|..|++-+.+-+....+ ...+++.+.+.+...|.++++-.+--|..+++..|+.. --.++.+.
T Consensus 30 s~n~~~kidAmK~iIa~M~~G~d-------mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~----lLavNti~ 98 (757)
T COG5096 30 SSNDYKKIDAMKKIIAQMSLGED-------MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELA----LLAVNTIQ 98 (757)
T ss_pred ccChHHHHHHHHHHHHHHhcCCC-------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHH----HHHHHHHH
Confidence 56777787787776665544322 24455656665557888999888888887777666321 23566677
Q ss_pred HHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccccHh
Q 006253 267 KAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIA 346 (653)
Q Consensus 267 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r 346 (653)
+.+++.++.+|..|+++++.+-.. .+++.+++.+.+.+.+ ....+|
T Consensus 99 kDl~d~N~~iR~~AlR~ls~l~~~-------------------------el~~~~~~~ik~~l~d---------~~ayVR 144 (757)
T COG5096 99 KDLQDPNEEIRGFALRTLSLLRVK-------------------------ELLGNIIDPIKKLLTD---------PHAYVR 144 (757)
T ss_pred hhccCCCHHHHHHHHHHHHhcChH-------------------------HHHHHHHHHHHHHccC---------CcHHHH
Confidence 788899999999999998877542 2233445555555431 234799
Q ss_pred hhHHHHHHHHHhhcCCCchhc-hHHHHHhhhcCcchhhHHHHHHHHHHhhcC
Q 006253 347 MAGGTCLGLVARTVGDDIVPL-VMPFVEENITKQEWRQREAATYAFGSILEG 397 (653)
Q Consensus 347 ~~a~~~L~~l~~~~~~~~~~~-l~~~l~~~l~~~~~~~r~aal~~l~~i~~~ 397 (653)
+.|+-|+..+-..-++.+... ....+...+.|+++.+..+|+.++..+-..
T Consensus 145 k~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 145 KTAALAVAKLYRLDKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 999999888776544444334 455566677899999999999998887754
No 136
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.41 E-value=0.038 Score=53.84 Aligned_cols=195 Identities=12% Similarity=0.124 Sum_probs=130.0
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHhhhcC----CCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhh
Q 006253 96 FILKTLSSPAHDARSTASQVVAKVAGIELP----HKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDH 171 (653)
Q Consensus 96 ~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~----~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~ 171 (653)
..+..+.+.....|..+-..+..+....+. .+++.++++.+...++.+...-+..|+.+++.++-.+.+..-....
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei 126 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEI 126 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHH
Confidence 334455566678888888877777655332 1356788999999998877666677888888777665311111455
Q ss_pred HhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhh--hc----------CCcHHHHHHH
Q 006253 172 VNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEA--TL----------SPEVKIRQAA 239 (653)
Q Consensus 172 ~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~--~~----------~~~~~~~~~~ 239 (653)
+..+.|.+.+.+.+...++.+|.+++.||+-+.-+...........-..+..++.. .+ .+++.+..++
T Consensus 127 ~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aA 206 (309)
T PF05004_consen 127 FEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAA 206 (309)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHH
Confidence 67888888888885445667888888888866543322111100001334422221 11 2346789999
Q ss_pred HHHHHHHHHHhHH-hhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHH
Q 006253 240 FECLVAISSTYYE-KLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDE 290 (653)
Q Consensus 240 ~~~l~~l~~~~~~-~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 290 (653)
+..|+-++...+. .+...+...+|.+...+.+.+.+||..|.+.+.-+.+.
T Consensus 207 L~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 207 LSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYEL 258 (309)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 9999999987765 35566778888888899999999999999887666553
No 137
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.37 E-value=0.25 Score=51.57 Aligned_cols=73 Identities=11% Similarity=0.046 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHHHhhhcCCC-CCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhh
Q 006253 89 VKAQIKSFILKTLSSPA--HDARSTASQVVAKVAGIELPHK-QWPELIGALLSNIHQLPPHTKQATLETLGYICEEV 162 (653)
Q Consensus 89 ~~~~i~~~ll~~l~~~~--~~vr~~~~~~l~~ia~~~~~~~-~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~ 162 (653)
..+..-.-+-+.|.+++ ..||+.+|.|+-.+.+.. |.- +-.++.+.+...+++.+-.+.-++...+..++...
T Consensus 143 ~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~s-pDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~ 218 (938)
T KOG1077|consen 143 MAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKS-PDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKN 218 (938)
T ss_pred HHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcC-ccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcC
Confidence 33444445557777664 689999999999999985 521 22377888899998877666666666777776665
No 138
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=97.37 E-value=0.015 Score=58.72 Aligned_cols=176 Identities=16% Similarity=0.168 Sum_probs=107.9
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhh-Cc-chHHHHHHHHHhc-CCCChhHHHHHHHHHhhhcchhhhhhHHHhhhh
Q 006253 5 VTQILLNAQSVDGTVRKQAEESLKQYQEQ-NL-PGFLLSLAGELVN-DEKPVESRKLAGLILKNALDAKEQHRKFELVQR 81 (653)
Q Consensus 5 l~~ll~~~~s~d~~~r~~A~~~L~~~~~~-~~-~~~~~~l~~il~~-~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~ 81 (653)
..+++++.+....-.|+. -..|.++... .+ .+|...+-.+|.= .++...-|... +++.++.+.-
T Consensus 13 ~~~if~k~Q~s~aGhrk~-~a~l~~~~t~~~f~~~flr~vn~IL~~Kk~~si~dRil~--fl~~f~~Y~~---------- 79 (885)
T COG5218 13 MQLIFNKIQQSSAGHRKS-LAELMEMLTAHEFSEEFLRVVNTILACKKNPSIPDRILS--FLKRFFEYDM---------- 79 (885)
T ss_pred HHHHHHHHhhhhhhHHHH-HHHHHHHHHHHhhHHHHHHHHHHhhccccCCCcHHHHHH--HHHHHHHhcC----------
Confidence 456666665554444543 3444444443 12 2344444444432 12334444433 5556555321
Q ss_pred ccCCC--hHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcC--CCCCchHHHHHHHhhcCCChhHHHHHHHHHHH
Q 006253 82 WLSLD--SSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELP--HKQWPELIGALLSNIHQLPPHTKQATLETLGY 157 (653)
Q Consensus 82 ~~~l~--~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~--~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~ 157 (653)
...+ .+....+...++.++.+++..||...+++++.+.....+ +..++.++..|...+-+-.+.+|..|..+|+.
T Consensus 80 -~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~ 158 (885)
T COG5218 80 -PDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCY 158 (885)
T ss_pred -CCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 1122 345566777888888899999999999999998876433 23567788888888888889999999999987
Q ss_pred HHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHH
Q 006253 158 ICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALY 201 (653)
Q Consensus 158 l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~ 201 (653)
+-+.. . .+ -..+...+...+++ ||+.+||..|+..+.
T Consensus 159 ~Qe~~-~----ne-en~~~n~l~~~vqn-DPS~EVRr~allni~ 195 (885)
T COG5218 159 YQEME-L----NE-ENRIVNLLKDIVQN-DPSDEVRRLALLNIS 195 (885)
T ss_pred HHhcc-C----Ch-HHHHHHHHHHHHhc-CcHHHHHHHHHHHee
Confidence 64432 1 11 12233445555555 999999999876554
No 139
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=97.36 E-value=0.02 Score=58.40 Aligned_cols=230 Identities=14% Similarity=0.100 Sum_probs=150.2
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhhC---cchHHHHHHHHHh---cCCCChhHHHHHHHHHhhhcchhhhhhHHHh
Q 006253 5 VTQILLNAQSVDGTVRKQAEESLKQYQEQN---LPGFLLSLAGELV---NDEKPVESRKLAGLILKNALDAKEQHRKFEL 78 (653)
Q Consensus 5 l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~---~~~~~~~l~~il~---~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~ 78 (653)
+.+++..+.|+|+..|......|..+..+- .+.+...+..++. .+......-.-.+.+++..+++..
T Consensus 135 i~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~------- 207 (409)
T PF01603_consen 135 IKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFA------- 207 (409)
T ss_dssp HHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT---------
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccC-------
Confidence 567888999999999999999998866541 1222222223332 112233333334456666665321
Q ss_pred hhhccCCChHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHH
Q 006253 79 VQRWLSLDSSVKAQIKSFILKTLSSPA-HDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGY 157 (653)
Q Consensus 79 ~~~~~~l~~~~~~~i~~~ll~~l~~~~-~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~ 157 (653)
..+.++.+..+.+.++.+.+.+. .....+++.|+..+...+ | ..-..++..++...--.++......+.-+..
T Consensus 208 ----~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kd-p-~l~~~~i~~llk~WP~t~s~Kev~FL~el~~ 281 (409)
T PF01603_consen 208 ----VPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKD-P-SLAEPVIKGLLKHWPKTNSQKEVLFLNELEE 281 (409)
T ss_dssp ----SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH--G-GGHHHHHHHHHHHS-SS-HHHHHHHHHHHHH
T ss_pred ----CCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC-c-hhHHHHHHHHHHhCCCCCchhHHHHHHHHHH
Confidence 23667888888888899888876 677899999999999987 4 2445677777777766777777778888888
Q ss_pred HHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHH--HHhhhhhcCChhHHHHHHHHHHhhh-----cC
Q 006253 158 ICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNA--LGFAQANFSNDMERDYIMRVVCEAT-----LS 230 (653)
Q Consensus 158 l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~--~~~~~~~~~~~~~~~~il~~l~~~~-----~~ 230 (653)
+++..++..+ ......++..+..+++ .++..|...|+..+.+- +..+.+ +...++|.+...+ .+
T Consensus 282 il~~~~~~~f-~~i~~~lf~~la~ci~--S~h~qVAErAl~~w~n~~~~~li~~------~~~~i~p~i~~~L~~~~~~H 352 (409)
T PF01603_consen 282 ILEVLPPEEF-QKIMVPLFKRLAKCIS--SPHFQVAERALYFWNNEYFLSLISQ------NSRVILPIIFPALYRNSKNH 352 (409)
T ss_dssp HHTT--HHHH-HHHHHHHHHHHHHHHT--SSSHHHHHHHHGGGGSHHHHHHHHC------THHHHHHHHHHHHSSTTSS-
T ss_pred HHHhcCHHHH-HHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHCCHHHHHHHHh------ChHHHHHHHHHHHHHHHHHH
Confidence 8888755556 5667788888889998 68899988888765432 222211 1244566655543 34
Q ss_pred CcHHHHHHHHHHHHHHHHHhHHhhHH
Q 006253 231 PEVKIRQAAFECLVAISSTYYEKLAP 256 (653)
Q Consensus 231 ~~~~~~~~~~~~l~~l~~~~~~~~~~ 256 (653)
-+..++..+..++..+.+..++.+..
T Consensus 353 Wn~~Vr~~a~~vl~~l~~~d~~lf~~ 378 (409)
T PF01603_consen 353 WNQTVRNLAQNVLKILMEMDPKLFDK 378 (409)
T ss_dssp SSTTHHHHHHHHHHHHHTTSHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 57789999999988888877765554
No 140
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.35 E-value=0.096 Score=54.07 Aligned_cols=140 Identities=14% Similarity=0.081 Sum_probs=91.9
Q ss_pred chhhHHHHHHHHHHhhcCCC--CCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchH
Q 006253 380 EWRQREAATYAFGSILEGPS--PEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQ 457 (653)
Q Consensus 380 ~~~~r~aal~~l~~i~~~~~--~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 457 (653)
+...+.||+.++-+++.... ...+. -..++..+++.+ .||...|..+++-++-++.-.+.+. ..+=.-.
T Consensus 390 d~~~~aaa~l~~~s~srsV~aL~tg~~--~~dv~~plvqll-~dp~~~i~~~~lgai~NlVmefs~~------kskfl~~ 460 (678)
T KOG1293|consen 390 DHDFVAAALLCLKSFSRSVSALRTGLK--RNDVAQPLVQLL-MDPEIMIMGITLGAICNLVMEFSNL------KSKFLRN 460 (678)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHcCCc--cchhHHHHHHHh-hCcchhHHHHHHHHHHHHHhhcccH------HHHHHHc
Confidence 45667788888766554210 01111 124456677778 9999999999999999998877631 1111223
Q ss_pred HHHHHHHHhccc-hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHHH
Q 006253 458 QIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVV 535 (653)
Q Consensus 458 ~il~~l~~~l~d-~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~ 535 (653)
..+..+.+.+.+ ++.+|..+.+++..+.=+..+ .....++-..-.+.+..+.++++ ..+++.++..+-.+.
T Consensus 461 ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de----~~k~~~~~ki~a~~i~~l~nd~d---~~Vqeq~fqllRNl~ 532 (678)
T KOG1293|consen 461 NGIDILESMLTDPDFNSRANSLWVLRHLMFNCDE----EEKFQLLAKIPANLILDLINDPD---WAVQEQCFQLLRNLT 532 (678)
T ss_pred CcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchH----HHHHHHHHHhhHHHHHHHHhCCC---HHHHHHHHHHHHHhh
Confidence 456777777776 678999999999988765433 23344555556667777777765 567777777666654
No 141
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.32 E-value=0.0022 Score=49.59 Aligned_cols=86 Identities=26% Similarity=0.376 Sum_probs=67.0
Q ss_pred HHHHHhc-CCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhHh
Q 006253 95 SFILKTL-SSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVN 173 (653)
Q Consensus 95 ~~ll~~l-~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~ 173 (653)
+.|++.+ .++++.+|..++.+++.+. -++.++.|.+.++++++.+|..++..|+.+- ..
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~--------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~------------~~ 61 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELG--------DPEAIPALIELLKDEDPMVRRAAARALGRIG------------DP 61 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCT--------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH------------HH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC--------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC------------CH
Confidence 4577888 7888999999999998331 2588999999999999999999999998541 23
Q ss_pred HHHHHHHhcccCCCCCHHHHHHHHHHHH
Q 006253 174 KILTAVVQGMNASESNNDVRLAATRALY 201 (653)
Q Consensus 174 ~l~~~l~~~l~~~~~~~~vr~~a~~~l~ 201 (653)
..++.+.+.+.+ +.+..+|..|+.+|+
T Consensus 62 ~~~~~L~~~l~~-~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 62 EAIPALIKLLQD-DDDEVVREAAAEALG 88 (88)
T ss_dssp HTHHHHHHHHTC--SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CCcHHHHHHHHhhcC
Confidence 456666777775 567788999998874
No 142
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=97.29 E-value=0.0066 Score=53.08 Aligned_cols=137 Identities=13% Similarity=0.106 Sum_probs=103.4
Q ss_pred CCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhh
Q 006253 128 QWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFA 207 (653)
Q Consensus 128 ~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~ 207 (653)
.++.+...+.+.+++.++..|..|+..+..+++..+++.+ ..+....+..+.+.++. ..++.++..++.++..++.++
T Consensus 22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l-~~~~~~W~~~Ll~~L~~-~~~~~~~~~ai~~L~~l~~~~ 99 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEIL-LSHGSQWLRALLSILEK-PDPPSVLEAAIITLTRLFDLI 99 (165)
T ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHh
Confidence 4567778888888999999999999999999998766667 57778888888888886 456788999999999998876
Q ss_pred hhhcCCh-----hHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHH
Q 006253 208 QANFSND-----MERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKA 268 (653)
Q Consensus 208 ~~~~~~~-----~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~ 268 (653)
.+..+.. .....+++.+....++ ......++.+|..++..+|..++|+..++-..+...
T Consensus 100 ~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~l 163 (165)
T PF08167_consen 100 RGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSL 163 (165)
T ss_pred cCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHH
Confidence 5432211 0113455666665543 566778999999999999998999887765555443
No 143
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=97.25 E-value=0.0093 Score=59.94 Aligned_cols=157 Identities=13% Similarity=0.185 Sum_probs=96.0
Q ss_pred HHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhc-CChhHHHHHHHhHHHhhHHHHhhhhhc
Q 006253 220 IMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVRE-DEEPVALQAIEFWSSVCDEEIDILEEY 298 (653)
Q Consensus 220 il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~ 298 (653)
+++-+...+...++..|..++..|.. + +-+..++|.....+.+ ..-.+....++.+..+..-.+.+.+.
T Consensus 208 Yy~~It~a~~g~~~~~r~eAL~sL~T---D------sGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~N- 277 (576)
T KOG2549|consen 208 YYKEITEACTGSDEPLRQEALQSLET---D------SGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDN- 277 (576)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcc---C------ccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcC-
Confidence 34444444445788889888888764 2 2234444444443332 12222333444444444433222211
Q ss_pred CCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccC-CccCCCccccHhhhHHHHHHHHHhhcCCC---chhchHHHHHh
Q 006253 299 GGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEE-DQDQDEGAWNIAMAGGTCLGLVARTVGDD---IVPLVMPFVEE 374 (653)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~e-d~~~d~~~~~~r~~a~~~L~~l~~~~~~~---~~~~l~~~l~~ 374 (653)
..-++.+++..++|.++.++....- ..-+.|+.|.+|..|+..+..++..+++. .-+.+..++..
T Consensus 278 -----------p~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k 346 (576)
T KOG2549|consen 278 -----------PNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSK 346 (576)
T ss_pred -----------CccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 1136788888888888776543211 11133568999999999999999988753 45677777777
Q ss_pred hhcCc--chhhHHHHHHHHHHhhcC
Q 006253 375 NITKQ--EWRQREAATYAFGSILEG 397 (653)
Q Consensus 375 ~l~~~--~~~~r~aal~~l~~i~~~ 397 (653)
.+.|+ .|...++++..|..+...
T Consensus 347 ~l~D~~~~~st~YGai~gL~~lg~~ 371 (576)
T KOG2549|consen 347 ALLDNKKPLSTHYGAIAGLSELGHE 371 (576)
T ss_pred HhcCCCCCchhhhhHHHHHHHhhhh
Confidence 77765 588899999998888764
No 144
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.24 E-value=0.00039 Score=41.15 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=26.5
Q ss_pred hHHHHHhhhcCcchhhHHHHHHHHHHhhcCC
Q 006253 368 VMPFVEENITKQEWRQREAATYAFGSILEGP 398 (653)
Q Consensus 368 l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~ 398 (653)
++|.+.+.++|++|.+|.+|+.+++.+++.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence 4678888999999999999999999998753
No 145
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.23 E-value=0.39 Score=50.95 Aligned_cols=357 Identities=13% Similarity=0.163 Sum_probs=192.6
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCCh---------hHHHHHHHHHHHHHhhhcccccchhhHhHHHH
Q 006253 107 DARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPP---------HTKQATLETLGYICEEVSSDAVEQDHVNKILT 177 (653)
Q Consensus 107 ~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~---------~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~ 177 (653)
.+|-.+-..+-.+...... -.-|.++..+.+......| -.+.+...+++.-+..+ ...+ +.-.=+..
T Consensus 412 ~lRPCaE~L~~~lF~~ysq-llvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l-~~~~--dF~~Wl~~ 487 (978)
T KOG1993|consen 412 NLRPCAEKLYKDLFDAYSQ-LLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYEL-SNIL--DFDKWLQE 487 (978)
T ss_pred ccchhHHHHHHHHHHHHHH-hhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHH-HhcC--CHHHHHHH
Confidence 5676666665555544322 2345666665433322211 13444455555444333 2222 11111122
Q ss_pred HHHhcccCCC-CCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCC-cHHHHHHHHHHHHHHHHHh---HH
Q 006253 178 AVVQGMNASE-SNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSP-EVKIRQAAFECLVAISSTY---YE 252 (653)
Q Consensus 178 ~l~~~l~~~~-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~-~~~~~~~~~~~l~~l~~~~---~~ 252 (653)
.++.-+.++. ..--+|...+..++.++.. .. ....+...-..++.++++. |--++-.+.+.+..++++. ++
T Consensus 488 ~llpEl~~~~~~~RiiRRRVa~ilg~Wvsv---q~-~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~d 563 (978)
T KOG1993|consen 488 ALLPELANDHGNSRIIRRRVAWILGQWVSV---QQ-KLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSED 563 (978)
T ss_pred hhCHHhhhcccchhHHHHHHHHHHhhhhhe---ec-hHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChh
Confidence 2222222212 2334678888888887762 11 1112344555667777775 7788889999999888875 45
Q ss_pred hhHHhHHHHHHHHHHHhhcC-ChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhh
Q 006253 253 KLAPYIQDIFNITAKAVRED-EEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLK 331 (653)
Q Consensus 253 ~~~~~l~~l~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~ 331 (653)
.|-||++.++..+++.++.. .-+.|...+..++++.+... ..+.|+...++..+-..
T Consensus 564 sFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~-------------------e~I~P~~~~ivq~lp~L--- 621 (978)
T KOG1993|consen 564 SFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVS-------------------EHIAPYASTIVQYLPLL--- 621 (978)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH-------------------HhhhHHHHHHHHHHHHH---
Confidence 67789998888888877653 33567777888887776431 23445555554443222
Q ss_pred ccCCccCCCccccHhhhHHHHHHHHHhhcCC---CchhchHHHHHhhh--cCcc-hhhHHHHHHHHHHhhcCCCCCcchH
Q 006253 332 QEEDQDQDEGAWNIAMAGGTCLGLVARTVGD---DIVPLVMPFVEENI--TKQE-WRQREAATYAFGSILEGPSPEKLVP 405 (653)
Q Consensus 332 ~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~---~~~~~l~~~l~~~l--~~~~-~~~r~aal~~l~~i~~~~~~~~~~~ 405 (653)
+++.++ +.-.|.+...+|..+....|. .+.|.+.|.+.-.. ++++ ...-+-++...+...... ..+.+
T Consensus 622 We~s~~----e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~--~~l~p 695 (978)
T KOG1993|consen 622 WEESEE----EPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNS--QKLTP 695 (978)
T ss_pred Hhhhcc----CcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcc--cccCH
Confidence 222211 125777778888999998874 56788888876543 3333 233455666666655543 33555
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccchhhHHHHHHHHHHHHH
Q 006253 406 LVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLA 485 (653)
Q Consensus 406 ~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~al~~~~ 485 (653)
-+-.++|.++..+ .- +...-.+++..+..+.-... +.....|...+...+...+. +|+..+..++..++
T Consensus 696 ~ll~L~p~l~~~i-E~-ste~L~t~l~Ii~sYilLd~------~~fl~~y~~~i~k~~~~~l~---dvr~egl~avLkiv 764 (978)
T KOG1993|consen 696 ELLLLFPHLLYII-EQ-STENLPTVLMIISSYILLDN------TVFLNDYAFGIFKKLNDLLD---DVRNEGLQAVLKIV 764 (978)
T ss_pred HHHHHHHHHHHHH-Hh-hhhhHHHHHHHHHHHHhhcc------HHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHH
Confidence 5666777777666 32 22333445555555554332 11234455555555555544 45555555555555
Q ss_pred hcccCCCCCCCCCch-hHHHHHHHHHHhc
Q 006253 486 QGFEDAISPSSPLTP-FFQEIVQALLTVT 513 (653)
Q Consensus 486 ~~~~~~~~~~~~l~~-~l~~i~~~L~~~l 513 (653)
+.+-.. ...+.+ +..++++.++..+
T Consensus 765 eili~t---~~il~~~~~~~~L~~lf~~I 790 (978)
T KOG1993|consen 765 EILIKT---NPILGSLLFSPLLSRLFLSI 790 (978)
T ss_pred HHHHhh---hHHHHhhhcchhhHHHHHHH
Confidence 544321 112222 3455666666544
No 146
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=97.21 E-value=0.0038 Score=54.77 Aligned_cols=142 Identities=18% Similarity=0.182 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHHhhhcCC---CCCchHHHHH-----------HHh-hcCCChhHHHHHHHHHHHHHhhhcccccch--
Q 006253 107 DARSTASQVVAKVAGIELPH---KQWPELIGAL-----------LSN-IHQLPPHTKQATLETLGYICEEVSSDAVEQ-- 169 (653)
Q Consensus 107 ~vr~~~~~~l~~ia~~~~~~---~~~~~l~~~l-----------~~~-l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~-- 169 (653)
.+|..+..++..+++...+. ..|+.++|.- +.+ +.|+++.+|.+|+.++..+.+... .++..
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk-~~L~~Ae 79 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSK-PFLAQAE 79 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccH-HHHHHHH
Confidence 47999999999999984342 4787777765 222 357788999999999999988752 22210
Q ss_pred -----------------hhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCc
Q 006253 170 -----------------DHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPE 232 (653)
Q Consensus 170 -----------------~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~ 232 (653)
..+..+-..+...+.. +.+..+....++|+..++...+=+-...+....++..+..++.+.|
T Consensus 80 ~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~-E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d 158 (182)
T PF13251_consen 80 ESKGPSGSFTSLSSTLASMIMELHRGLLLALQA-EKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRD 158 (182)
T ss_pred hcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhc-ccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCC
Confidence 1123344445566665 6677788899999999887544211222334566677777777889
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 006253 233 VKIRQAAFECLVAISSTY 250 (653)
Q Consensus 233 ~~~~~~~~~~l~~l~~~~ 250 (653)
.+++..++.+++.++...
T Consensus 159 ~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 159 PNVRVAALSCLGALLSVQ 176 (182)
T ss_pred CcHHHHHHHHHHHHHcCC
Confidence 999999999999887653
No 147
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.12 Score=55.07 Aligned_cols=210 Identities=17% Similarity=0.195 Sum_probs=125.0
Q ss_pred chhhHHHHHHHHHHhhcCCCCCcchHH-HHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHhhhccCCCCccccCccchH
Q 006253 380 EWRQREAATYAFGSILEGPSPEKLVPL-VNIALNFMLTALMQD-PNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQ 457 (653)
Q Consensus 380 ~~~~r~aal~~l~~i~~~~~~~~~~~~-l~~l~~~ll~~l~~d-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 457 (653)
++..+-.++.-++.+......+.+..+ ++.++|.|+..+ ++ .++.+-..||.|+..+++.++.. .....-.
T Consensus 181 Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL-~~E~n~DIMl~AcRaltyl~evlP~S------~a~vV~~ 253 (1051)
T KOG0168|consen 181 DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALL-SHEHNFDIMLLACRALTYLCEVLPRS------SAIVVDE 253 (1051)
T ss_pred ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHhhccch------hheeecc
Confidence 444444455555543321112233222 567889999999 55 46789999999999999999842 2333444
Q ss_pred HHHHHHHHhccc--hhhHHHHHHHHHHHHHhcccCCCCCCCCCch-hHHHHHHHHHHhccccccchhchHHHHHHHHHHH
Q 006253 458 QIISVLLQSMKD--VPNVAEKACGALYFLAQGFEDAISPSSPLTP-FFQEIVQALLTVTHREDAGESRLRTAAYETLNEV 534 (653)
Q Consensus 458 ~il~~l~~~l~d--~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~-~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l 534 (653)
..+|.|++.|.. --.|.+++..|+..+...- +++.+.. -+...+. .+..+.. ..+..|+......
T Consensus 254 ~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H-----~~AiL~AG~l~a~Ls-ylDFFSi------~aQR~AlaiaaN~ 321 (1051)
T KOG0168|consen 254 HAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH-----PKAILQAGALSAVLS-YLDFFSI------HAQRVALAIAANC 321 (1051)
T ss_pred cchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc-----cHHHHhcccHHHHHH-HHHHHHH------HHHHHHHHHHHHH
Confidence 588999888875 3688999999999887652 1233332 1222222 2222221 2445777777788
Q ss_pred HHhcccccHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHhHHHHHHHHhCCCcchhhHhhH-hHHHHHHHH
Q 006253 535 VRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQ-YADQMMGLF 613 (653)
Q Consensus 535 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~-~~~~i~~~l 613 (653)
++....+--.|+...+|.+...|.. .|++ ....++-|+..++.+..+.. ..+.+ .-..+++.+
T Consensus 322 Cksi~sd~f~~v~ealPlL~~lLs~--------~D~k-----~ies~~ic~~ri~d~f~h~~---~kLdql~s~dLi~~~ 385 (1051)
T KOG0168|consen 322 CKSIRSDEFHFVMEALPLLTPLLSY--------QDKK-----PIESVCICLTRIADGFQHGP---DKLDQLCSHDLITNI 385 (1051)
T ss_pred HhcCCCccchHHHHHHHHHHHHHhh--------ccch-----hHHHHHHHHHHHHHhcccCh---HHHHHHhchhHHHHH
Confidence 7777755334556678887777665 2232 12246677888888776551 11333 223566666
Q ss_pred HHHHhccCcch
Q 006253 614 LRVFAIRSATA 624 (653)
Q Consensus 614 ~~~l~~~~~~~ 624 (653)
.+.+......+
T Consensus 386 ~qLlsvt~t~L 396 (1051)
T KOG0168|consen 386 QQLLSVTPTIL 396 (1051)
T ss_pred HHHHhcCcccc
Confidence 66666553333
No 148
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=97.17 E-value=0.011 Score=61.41 Aligned_cols=191 Identities=18% Similarity=0.194 Sum_probs=128.0
Q ss_pred HHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhh
Q 006253 216 ERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDIL 295 (653)
Q Consensus 216 ~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 295 (653)
+...+++.+.++...+|..+|...+.-+-.+++...+. .+-..++|.+...+.|.++.+|.+++.++..++..-
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~--~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL---- 400 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQ--ILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKL---- 400 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHH--hhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhh----
Confidence 44568999999998899999988877777666544321 123579999999999999999999999888887531
Q ss_pred hhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCCc-hhchHHHHHh
Q 006253 296 EEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDI-VPLVMPFVEE 374 (653)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~~-~~~l~~~l~~ 374 (653)
....+. --+++.+....-|+ +-.+|.-...|++.++....... -..+......
T Consensus 401 ------------------~~~~Ln---~Ellr~~ar~q~d~-----~~~irtntticlgki~~~l~~~~R~~vL~~aftr 454 (690)
T KOG1243|consen 401 ------------------SKRNLN---GELLRYLARLQPDE-----HGGIRTNTTICLGKIAPHLAASVRKRVLASAFTR 454 (690)
T ss_pred ------------------chhhhc---HHHHHHHHhhCccc-----cCcccccceeeecccccccchhhhccccchhhhh
Confidence 000111 12233333222221 12456666677777776652111 1122222334
Q ss_pred hhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhc
Q 006253 375 NITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLH 442 (653)
Q Consensus 375 ~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~ 442 (653)
.+.|+-...|.|++.++.+..+... ....-.+++|.+.... .|++..||..|..++..+-....
T Consensus 455 alkdpf~paR~a~v~~l~at~~~~~---~~~va~kIlp~l~pl~-vd~e~~vr~~a~~~i~~fl~kl~ 518 (690)
T KOG1243|consen 455 ALKDPFVPARKAGVLALAATQEYFD---QSEVANKILPSLVPLT-VDPEKTVRDTAEKAIRQFLEKLE 518 (690)
T ss_pred hhcCCCCCchhhhhHHHhhcccccc---hhhhhhhccccccccc-cCcccchhhHHHHHHHHHHhhhh
Confidence 5667777889999999998887653 2334456778887778 89999999999999988877664
No 149
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.17 E-value=0.058 Score=58.51 Aligned_cols=101 Identities=22% Similarity=0.208 Sum_probs=71.9
Q ss_pred hhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHH
Q 006253 381 WRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQD-PNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQI 459 (653)
Q Consensus 381 ~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~i 459 (653)
.+.|-.+.+.|+.++.+...-+....-.+++...+..+ +| ++|.+|+=.+-|||++=+.+... .-.-.-...
T Consensus 571 ~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~l-nd~~~pLLrQW~~icLG~LW~d~~~A------rw~G~r~~A 643 (1387)
T KOG1517|consen 571 PEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHL-NDDPEPLLRQWLCICLGRLWEDYDEA------RWSGRRDNA 643 (1387)
T ss_pred HHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHh-cCCccHHHHHHHHHHHHHHhhhcchh------hhccccccH
Confidence 47788888999999988632222223345677777888 77 58999999999999998776531 111122234
Q ss_pred HHHHHHhccc-hhhHHHHHHHHHHHHHhcc
Q 006253 460 ISVLLQSMKD-VPNVAEKACGALYFLAQGF 488 (653)
Q Consensus 460 l~~l~~~l~d-~~~v~~~a~~al~~~~~~~ 488 (653)
-..|+..+.| .++||.+|..||+.|+.+.
T Consensus 644 hekL~~~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 644 HEKLILLLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence 5566667777 5999999999999999874
No 150
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=97.16 E-value=0.022 Score=54.98 Aligned_cols=173 Identities=17% Similarity=0.227 Sum_probs=111.6
Q ss_pred chhhHHHHH-HHHHHhhc-CCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCC---CCccccCcc
Q 006253 380 EWRQREAAT-YAFGSILE-GPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGST---LETPIINQG 454 (653)
Q Consensus 380 ~~~~r~aal-~~l~~i~~-~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~---~~~~~~~~~ 454 (653)
.|+...+.. ..+..+.. ......+..+.+-++|.++..+ +|..+.+|..++.++..+.+..+... + ....
T Consensus 88 ~WK~~~~~~~~~l~w~v~~~~~~~~i~~~~~liiP~iL~ll-DD~~~~~K~~G~~lL~~ll~~~~~~~~~~L----~~tG 162 (282)
T PF10521_consen 88 PWKSNPGLASHVLSWIVLSQLDRPWISQHWPLIIPPILNLL-DDYSPEIKIQGCQLLHHLLEKVPAAEWDIL----RRTG 162 (282)
T ss_pred CcccCCcccHHHHHHHHHhcCCcchHHHhhhHHHhhHHHHh-cCCCHHHHHHHHHHHHHHHHhCChhhhHHH----HHcC
Confidence 465544222 33333333 4445667888999999999999 99999999999999999999776321 1 1112
Q ss_pred chHHHHHHHHHhcc--------c-hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHH-HHHHHhccccc-cchhch
Q 006253 455 NCQQIISVLLQSMK--------D-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIV-QALLTVTHRED-AGESRL 523 (653)
Q Consensus 455 ~~~~il~~l~~~l~--------d-~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~-~~L~~~l~~~~-~~~~~~ 523 (653)
..+-+.+.+...+. + ...+-..|..++..++...... ....-...+..++ ..++..+.... .....+
T Consensus 163 l~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~--~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l 240 (282)
T PF10521_consen 163 LFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALLSLLKTQEND--DSNPRSTWLDKILREGILSSMEHESSFSYPRL 240 (282)
T ss_pred hHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHhhccC--CcccchHHHHHHHHHHHhhhceeccccCchhH
Confidence 23333344444443 2 3566778888888887753221 1222333343333 43555554332 112578
Q ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Q 006253 524 RTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQ 559 (653)
Q Consensus 524 ~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~ 559 (653)
+...++.+..++...|.....|+..+++.+.+.+.+
T Consensus 241 ~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~n 276 (282)
T PF10521_consen 241 RTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILEN 276 (282)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcC
Confidence 889999999999999999999999988888775543
No 151
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.12 E-value=0.017 Score=54.10 Aligned_cols=187 Identities=14% Similarity=0.168 Sum_probs=122.8
Q ss_pred HHHHHhcCC-CChHHHHHHHHHHHHHHhhhcCCCCC--chHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhh
Q 006253 95 SFILKTLSS-PAHDARSTASQVVAKVAGIELPHKQW--PELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDH 171 (653)
Q Consensus 95 ~~ll~~l~~-~~~~vr~~~~~~l~~ia~~~~~~~~~--~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~ 171 (653)
+.|+..|.. .++.++..+..+++..+.+.+..+.+ ...++.+...+.++++.+|..|+.++..++...+ . +..
T Consensus 15 ~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e-n---~~~ 90 (254)
T PF04826_consen 15 QKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE-N---QEQ 90 (254)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh-h---HHH
Confidence 467788875 57899999999999987654322122 4677888999999999999999999998766542 1 222
Q ss_pred HhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhH
Q 006253 172 VNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYY 251 (653)
Q Consensus 172 ~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~ 251 (653)
....++.+.+.+.+..-+..++.+++++|.++.- .... .......++.++.++...+..++..++++|..+.+. +
T Consensus 91 Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv--~~~~--~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n-p 165 (254)
T PF04826_consen 91 IKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTV--TNDY--HHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSEN-P 165 (254)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCC--Ccch--hhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccC-H
Confidence 3334444444333223467888999999998632 1111 111133566667778778889999999999988875 3
Q ss_pred HhhHHhHH-HHHHHHHHHhhc-CChhHHHHHHHhHHHhhHH
Q 006253 252 EKLAPYIQ-DIFNITAKAVRE-DEEPVALQAIEFWSSVCDE 290 (653)
Q Consensus 252 ~~~~~~l~-~l~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~ 290 (653)
...+..+. +...-++..+.. .+.++...++.+...+.+.
T Consensus 166 ~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 166 DMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred HHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 33333332 344444555554 3566777777777776653
No 152
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=97.11 E-value=0.013 Score=50.86 Aligned_cols=151 Identities=13% Similarity=0.216 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccchhhHHHHHHHHHHHHHh
Q 006253 407 VNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQ 486 (653)
Q Consensus 407 l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~al~~~~~ 486 (653)
.+++++.+++.+..+.++.+|..+++++|.++..- +|....+..-.+.. ........+.....+..
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALD------------P~~~k~~~~~~~~~--~~~~~~~~~~~~~l~~~ 73 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGILGALD------------PYKHKSIQKSLDSK--SSENSNDESTDISLPMM 73 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccC------------cHHHhcccccCCcc--ccccccccchhhHHhhc
Confidence 46788888888844567999999999999886532 22222111100000 00000000101111111
Q ss_pred cccCCCCCCCCCchhHH-HHHHHHHHhccccccchhchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhhc
Q 006253 487 GFEDAISPSSPLTPFFQ-EIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQK 565 (653)
Q Consensus 487 ~~~~~~~~~~~l~~~l~-~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~ 565 (653)
.. ......|++ -.+..|++++++.+. +..+..++.++..+.+..|..+.||+.+++|.+++.++++
T Consensus 74 ~~------~~~~ee~y~~vvi~~L~~iL~D~sL--s~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~----- 140 (160)
T PF11865_consen 74 GI------SPSSEEYYPTVVINALMRILRDPSL--SSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTC----- 140 (160)
T ss_pred cC------CCchHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhC-----
Confidence 11 123455655 457899999998874 5667789999999999999999999999999999998864
Q ss_pred CChhHHHhHHHHHHHHHhHHHHHHHHh
Q 006253 566 LSSDEREKQNEIQGLLCGCLQVIIQKL 592 (653)
Q Consensus 566 ~~~~~~~~~~~l~~~~~~~i~~i~~~~ 592 (653)
+ + ++++..+.-++.+..-+
T Consensus 141 --~-~-----~~~e~~~~qL~~lv~iv 159 (160)
T PF11865_consen 141 --P-D-----SLREFYFQQLADLVSIV 159 (160)
T ss_pred --C-H-----HHHHHHHHHHHHHHHHh
Confidence 1 2 24445666666665543
No 153
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=97.05 E-value=0.0044 Score=53.82 Aligned_cols=91 Identities=12% Similarity=0.230 Sum_probs=75.0
Q ss_pred hHHHHHHHHHhccc-hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHH
Q 006253 456 CQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEV 534 (653)
Q Consensus 456 ~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l 534 (653)
++.++|.+.+++.+ ....+--|...+..+++. + .+..+.|.+++++..+.+.++..+ ..+...++.+|..+
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~-~----~~~kilPvlPqLI~plk~AL~tr~---~~V~~~~L~~Lq~L 107 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLER-G----GGEKILPVLPQLIIPLKRALNTRD---PEVFCATLKALQQL 107 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHh-c----chhHHHHHHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHH
Confidence 56889999999986 555666777778888876 2 257799999999999999999875 67788999999999
Q ss_pred ---HHhcccccHHHHHHHHHHHH
Q 006253 535 ---VRCSTDETAPMVMQLVPLIM 554 (653)
Q Consensus 535 ---~~~~~~~~~~~~~~l~~~l~ 554 (653)
....|+...||+.+++|.+-
T Consensus 108 v~~~~~vG~aLvPyyrqLLp~ln 130 (183)
T PF10274_consen 108 VTSSDMVGEALVPYYRQLLPVLN 130 (183)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHH
Confidence 66677889999999999874
No 154
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=97.02 E-value=1.5 Score=53.84 Aligned_cols=544 Identities=14% Similarity=0.155 Sum_probs=258.3
Q ss_pred HHHHHHHHHHHHhh--CcchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhccCCCh---HHHHHHH
Q 006253 20 RKQAEESLKQYQEQ--NLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDS---SVKAQIK 94 (653)
Q Consensus 20 r~~A~~~L~~~~~~--~~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~---~~~~~i~ 94 (653)
-..|.+.+..+... +...|+..++.-..+ ..+++.|..|+......+.+.... ...++ +....+.
T Consensus 461 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~r~~~~l~~~~ll~~~~~~---------~~~~~~~~~~v~~vl 530 (2341)
T KOG0891|consen 461 IQLAFKTLGGFKFSGYSLTLFVQQCVDSYLE-ADDSEIRKNAALTCCELLKYDIIC---------SQTSPHALQVVKEVL 530 (2341)
T ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHhhhhhh---------hcccchHHHHHHHHH
Confidence 33455555544332 335666664444443 458899999977766666543210 11122 1233333
Q ss_pred HHHHHh-cCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhHh
Q 006253 95 SFILKT-LSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVN 173 (653)
Q Consensus 95 ~~ll~~-l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~ 173 (653)
+.++.+ +.+.++.+|-..-..+. -+.+ ++-.-|+++..++..+.++.-..+..+...++.++... |.++ -+.+.
T Consensus 531 ~~ll~~aia~~~~~i~~~v~~~l~--~~~~-~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~-~a~v-l~~lr 605 (2341)
T KOG0891|consen 531 SALLTVAIADTDPDIRIRVLSSLN--ERFD-AQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYN-PAYV-LPSLR 605 (2341)
T ss_pred HHHHHHhccCCCcchhhhHHhhhc--cchh-hhhcCchhHHHHHHHhhhhhhhhHHhHHhhcccccccc-HHHH-hHHHH
Confidence 444443 44566666655444443 1111 22245778888888888888888888888888777654 4333 23333
Q ss_pred HHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHh
Q 006253 174 KILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEK 253 (653)
Q Consensus 174 ~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 253 (653)
........-+.- +....+.....+-+...+....... ..+...++..+...+++.+..+-+.+..++..++...+..
T Consensus 606 ~~~l~~~s~l~~-sg~~r~~~~~a~~~~~~i~~~~~~i--~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~ 682 (2341)
T KOG0891|consen 606 KTLLELLTELEF-SGMARTKEESAKLLCELIISSPVLI--SPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEE 682 (2341)
T ss_pred HHHHHHhchhhh-cchHHhHHHHHHHhhHHHHHHHHHH--HhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccch
Confidence 333222222221 1111111111111111111000000 0111234455555566677778888999999999988877
Q ss_pred hHHhHHHHHHHHHHHhhcC-ChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhc
Q 006253 254 LAPYIQDIFNITAKAVRED-EEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQ 332 (653)
Q Consensus 254 ~~~~l~~l~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~ 332 (653)
+..+...+++.+...+.+. ...-+..++..+..+.+...-..+.+. ..+..+...+..+.+....
T Consensus 683 ~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~~~v~p~~---------~~P~ll~~l~~~~~te~~~----- 748 (2341)
T KOG0891|consen 683 MVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLESSTGYVVDPYL---------DYPELLDILINILKTEQSS----- 748 (2341)
T ss_pred hhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccceEecccc---------cChHHHHHHHHHHhHhhhh-----
Confidence 7666777777777766653 334556666666666653211111110 0111112111111111111
Q ss_pred cCCccCCCccccHhhhHHHHHHHHHhhc-------------------C-----------------CCchhch-HHHHHhh
Q 006253 333 EEDQDQDEGAWNIAMAGGTCLGLVARTV-------------------G-----------------DDIVPLV-MPFVEEN 375 (653)
Q Consensus 333 ~ed~~~d~~~~~~r~~a~~~L~~l~~~~-------------------~-----------------~~~~~~l-~~~l~~~ 375 (653)
.+|.++...++..+... + +..+|.. +..+...
T Consensus 749 -----------~ir~~~v~~~g~~g~~d~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~p~v~I~~l~~~ 817 (2341)
T KOG0891|consen 749 -----------TIRREAIRLLGLLGALDPYKHKVTEGTSASKISSEQIKSDIDISLLESGVNPSNDEYYPAVTIHALMGI 817 (2341)
T ss_pred -----------HHHHHHHHHhhhhcccchhHHHHHhhhhhHhhhhccccccchHHHHHhhhhhhhhhhhhHHHHHHHhhh
Confidence 11222222221111000 0 1111100 0001111
Q ss_pred hcCcchhhHH-HHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCcc
Q 006253 376 ITKQEWRQRE-AATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQG 454 (653)
Q Consensus 376 l~~~~~~~r~-aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~ 454 (653)
+.++.-..+. ..+.+.--+.... ......++++++|.++... ....+..+.....-+....- ....
T Consensus 818 l~d~~~~~~l~~~~~a~~~i~~~~-~~~~~l~l~qv~~~~~~~~-r~~~~~~~~f~~~q~~~~~~-----------~~~~ 884 (2341)
T KOG0891|consen 818 LKDPSLSIHHTAVAQAIMHIFQSL-GLKCVLFLDQVIPTLIDVM-RSCPPNLREFYFQQLTSLVA-----------IVRQ 884 (2341)
T ss_pred hhhhhhHHHHHHhhhchhHHHHhh-ccchhhhHHHHHHHHHHHH-HhcCcchhHHHHHhhhhhhh-----------ccch
Confidence 1111000000 0000100011110 0112234555555544333 22222222221111111111 1122
Q ss_pred chHHHHHHHHHhccc----hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHH
Q 006253 455 NCQQIISVLLQSMKD----VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYET 530 (653)
Q Consensus 455 ~~~~il~~l~~~l~d----~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~ 530 (653)
...+.++.......+ +..+.......+..+...++ ..+..|+++.++..+... ..+ ....+......
T Consensus 885 h~~~~~~~i~~~i~~~~~~~~~l~~~~~~l~~~i~~~l~------~~f~~~l~~~~~~~l~~~-~~~--~s~~~~~~~~~ 955 (2341)
T KOG0891|consen 885 HIRPYMESIFTLIKDFWPPDTSLQITIISLIEDIAVALG------GEFKKYLPELLPTMLTVL-QHD--KSKDRVVSRKV 955 (2341)
T ss_pred hHhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH------hHHHHhhhhhccchheee-ccc--ccchHHHHHHh
Confidence 222333333333332 22333333444444544443 447778888877777666 333 12233222222
Q ss_pred HHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHhHHHHHHHHhCCCcchhhHhhHhHHHHH
Q 006253 531 LNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMM 610 (653)
Q Consensus 531 l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~i~ 610 (653)
... ....|.....|+.-+.|.+++.++... ....++..++.+++..+..+. +..|...+.
T Consensus 956 ~~~-~~~~~~~~~~~~hl~~~~~vkl~~~~~-----------~~~~~~~~~l~t~~~l~~~~~--------~~~~~s~i~ 1015 (2341)
T KOG0891|consen 956 LQS-LQKFGSNLEQYLHLLLPPIVKLFEDPT-----------VPLSIRKSALITIGRLAQQVD--------LSEYASRII 1015 (2341)
T ss_pred hHH-HHhcCccHHhhHhhhccHHHHHHhhhh-----------hhHHHHhhHHHHHHHHHHhhH--------HHHHHHHHH
Confidence 222 233344556677778888888777531 112345557777777777654 778999999
Q ss_pred HHHHHHHhccCcchhhhHHHHHHHHHHHhccCCccc-hhh
Q 006253 611 GLFLRVFAIRSATAHEEAMLAIGALAYATGLWRIRY-CLI 649 (653)
Q Consensus 611 ~~l~~~l~~~~~~~~e~~~~~~~~l~~~~~~~f~~y-~~i 649 (653)
..+++.+... .+++...+..++.+...+|..|..+ |.+
T Consensus 1016 ~~~~r~l~~s-~el~~~~~~~l~~l~~~~~~~~~i~~p~~ 1054 (2341)
T KOG0891|consen 1016 HPLVRVLSSS-PELRDVIMDTLIALVKQLGKDFAIFIPMV 1054 (2341)
T ss_pred HHHHHhhccc-hhHHHHHHHHHHHHHHhhcCceeehHHHH
Confidence 9999999988 8899999999999999999999988 654
No 155
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=97.01 E-value=0.0094 Score=52.34 Aligned_cols=149 Identities=20% Similarity=0.254 Sum_probs=91.5
Q ss_pred hHHHHHHHHHHhhcCCCCCcchHHHHHHHHH-----------HHHHhcCCCchHHHHHHHHHHHHHHhhhcc----CC-C
Q 006253 383 QREAATYAFGSILEGPSPEKLVPLVNIALNF-----------MLTALMQDPNNHVKDTTAWTLGRMFEFLHG----ST-L 446 (653)
Q Consensus 383 ~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~-----------ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~----~~-~ 446 (653)
+|.+|+.+++.++...++..+..|...++|. ++..+..|+++++|.+|+.++..+.+.... .+ .
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 5667777777776664444555554444432 233322899999999999999888654320 00 0
Q ss_pred Ccc-ccCcc-------chHHHHHHHHHhccc--hhhHHHHHHHHHHHHHhcccCCCCCCCCCc-hhHHHHHHHHHHhccc
Q 006253 447 ETP-IINQG-------NCQQIISVLLQSMKD--VPNVAEKACGALYFLAQGFEDAISPSSPLT-PFFQEIVQALLTVTHR 515 (653)
Q Consensus 447 ~~~-~~~~~-------~~~~il~~l~~~l~d--~~~v~~~a~~al~~~~~~~~~~~~~~~~l~-~~l~~i~~~L~~~l~~ 515 (653)
.++ ....+ .+..+-..|+..++. +..+....+.++..++.+. +-..+. .+++.++..+...+..
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~t-----PY~rL~~~ll~~~v~~v~~~l~~ 156 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQAT-----PYHRLPPGLLTEVVTQVRPLLRH 156 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccC-----ChhhcCHhHHHHHHHHHHHHHhc
Confidence 000 01111 122233344444542 4667778888999888863 233444 4778888888888877
Q ss_pred cccchhchHHHHHHHHHHHHHhcc
Q 006253 516 EDAGESRLRTAAYETLNEVVRCST 539 (653)
Q Consensus 516 ~~~~~~~~~~~~~~~l~~l~~~~~ 539 (653)
.+ .+++..++.+++.++...+
T Consensus 157 ~d---~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 157 RD---PNVRVAALSCLGALLSVQP 177 (182)
T ss_pred CC---CcHHHHHHHHHHHHHcCCC
Confidence 54 6788899999999987654
No 156
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=96.96 E-value=0.29 Score=49.47 Aligned_cols=203 Identities=8% Similarity=0.037 Sum_probs=114.2
Q ss_pred CcchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHH
Q 006253 34 NLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTAS 113 (653)
Q Consensus 34 ~~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~ 113 (653)
+.+.+...+++++.. ...+++.+....++...+...++-. ..+..... .....-..++..|..++..+...++
T Consensus 50 ~~~~y~~~~l~ll~~-~~~~d~vqyvL~Li~dll~~~~~~~-----~~f~~~~~-~~~~~~~~fl~lL~~~d~~i~~~a~ 122 (429)
T cd00256 50 LSGQYVKTFVNLLSQ-IDKDDTVRYVLTLIDDMLQEDDTRV-----KLFHDDAL-LKKKTWEPFFNLLNRQDQFIVHMSF 122 (429)
T ss_pred cHHHHHHHHHHHHhc-cCcHHHHHHHHHHHHHHHHhchHHH-----HHHHHHhh-ccccchHHHHHHHcCCchhHHHHHH
Confidence 347888888898876 5678999999999888887543210 11111100 0112334556677788889999999
Q ss_pred HHHHHHHhhhcCCCCC----chHHHHHHHhhcCC-ChhHHHHHHHHHHHHHhhhcc-cccchhhHhHHHHHHHhcccCCC
Q 006253 114 QVVAKVAGIELPHKQW----PELIGALLSNIHQL-PPHTKQATLETLGYICEEVSS-DAVEQDHVNKILTAVVQGMNASE 187 (653)
Q Consensus 114 ~~l~~ia~~~~~~~~~----~~l~~~l~~~l~~~-~~~~~~~~l~~l~~l~~~~~~-~~~~~~~~~~l~~~l~~~l~~~~ 187 (653)
.+++.++... +...- +-+++.+...+.++ +...+..|+.|+..++..-.. ..+ .. ...++.+...++...
T Consensus 123 ~iLt~l~~~~-~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f-~~--~~~v~~L~~~L~~~~ 198 (429)
T cd00256 123 SILAKLACFG-LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAF-VL--ADGVPTLVKLLSNAT 198 (429)
T ss_pred HHHHHHHhcC-ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHH-HH--ccCHHHHHHHHhhcc
Confidence 9999998754 21112 22445566666554 456777888999888775311 111 00 113445555554312
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcC-CcHHHHHHHHHHHHHHHHH
Q 006253 188 SNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLS-PEVKIRQAAFECLVAISST 249 (653)
Q Consensus 188 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~l~~l~~~ 249 (653)
.+..+...++-|+-.+. |-++... ......+++.+...++. ..+++-+-++.+|..++..
T Consensus 199 ~~~Ql~Y~~ll~lWlLS-F~~~~~~-~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~ 259 (429)
T cd00256 199 LGFQLQYQSIFCIWLLT-FNPHAAE-VLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISK 259 (429)
T ss_pred ccHHHHHHHHHHHHHHh-ccHHHHH-hhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Confidence 24566666655543321 2211100 01113466766666643 4556666666666666664
No 157
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.91 E-value=0.21 Score=48.77 Aligned_cols=112 Identities=17% Similarity=0.330 Sum_probs=81.6
Q ss_pred hHHHHHH-HhhcCCChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhh-
Q 006253 131 ELIGALL-SNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQ- 208 (653)
Q Consensus 131 ~l~~~l~-~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~- 208 (653)
++++.++ ..+++.++.+|+.|+.|++..+-.- ......-++.+.+.+. ..+..+|..|++++..++....
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld------~~~a~~~l~l~~~~~~--~~~~~v~~~al~~l~Dll~~~g~ 97 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLD------KELAKEHLPLFLQALQ--KDDEEVKITALKALFDLLLTHGI 97 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC------hHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHHcCc
Confidence 6666654 6678889999999999999766543 2334555666777775 3489999999999999876432
Q ss_pred hhcCChh------HHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHh
Q 006253 209 ANFSNDM------ERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTY 250 (653)
Q Consensus 209 ~~~~~~~------~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~ 250 (653)
..+.... ....+++.+...+.+.+++++..+++.+.++.-..
T Consensus 98 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~ 145 (298)
T PF12719_consen 98 DIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSG 145 (298)
T ss_pred hhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence 2222111 12468888888888889999999999999987643
No 158
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=96.89 E-value=0.016 Score=60.17 Aligned_cols=192 Identities=13% Similarity=0.149 Sum_probs=136.2
Q ss_pred HhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCC
Q 006253 256 PYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEED 335 (653)
Q Consensus 256 ~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed 335 (653)
+|...++|.+++.+...|..+|..-+..+..+.+.-. . +.+-.+++|.+...+.+
T Consensus 326 eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt------------------~---~~~~d~I~phv~~G~~D---- 380 (690)
T KOG1243|consen 326 EYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLT------------------K---QILNDQIFPHVALGFLD---- 380 (690)
T ss_pred ccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcC------------------H---HhhcchhHHHHHhhccc----
Confidence 4677899999999999999999877766666654310 0 11223677877776652
Q ss_pred ccCCCccccHhhhHHHHHHHHHhhcCCCch-hchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHH
Q 006253 336 QDQDEGAWNIAMAGGTCLGLVARTVGDDIV-PLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFM 414 (653)
Q Consensus 336 ~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~-~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l 414 (653)
.+.++|..+..++..++..++...+ ..++..+...-.|.+...|--...|+|.|+.......-... +....
T Consensus 381 -----Tn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~v---L~~af 452 (690)
T KOG1243|consen 381 -----TNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRV---LASAF 452 (690)
T ss_pred -----CCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCccccCcccccceeeecccccccchhhhccc---cchhh
Confidence 2247899999999999999887643 46777777666677777888788888888876421111111 12223
Q ss_pred HHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc-hhhHHHHHHHHHHHHHhcccC
Q 006253 415 LTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFED 490 (653)
Q Consensus 415 l~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~~~~~ 490 (653)
.+.+ +|+.+.-|.++.+.+..-.+.+. ..+.-..++|.+.....| ++.||..|..++..+...+..
T Consensus 453 tral-kdpf~paR~a~v~~l~at~~~~~---------~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~ 519 (690)
T KOG1243|consen 453 TRAL-KDPFVPARKAGVLALAATQEYFD---------QSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEK 519 (690)
T ss_pred hhhh-cCCCCCchhhhhHHHhhcccccc---------hhhhhhhccccccccccCcccchhhHHHHHHHHHHhhhhh
Confidence 3457 99999999999999888777664 456667777777776666 688999999999988876543
No 159
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.83 E-value=0.08 Score=57.50 Aligned_cols=194 Identities=20% Similarity=0.227 Sum_probs=134.9
Q ss_pred CcchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHH
Q 006253 34 NLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTAS 113 (653)
Q Consensus 34 ~~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~ 113 (653)
.||+=++-.+++|.+ +--|.=|+++|.++++- ..|.. +-..-..|.+-.+++|.++..++|..++
T Consensus 469 ~PPeQLPiVLQVLLS----QvHRlRAL~LL~RFLDl----------GpWAV-~LaLsVGIFPYVLKLLQS~a~ELrpiLV 533 (1387)
T KOG1517|consen 469 TPPEQLPIVLQVLLS----QVHRLRALVLLARFLDL----------GPWAV-DLALSVGIFPYVLKLLQSSARELRPILV 533 (1387)
T ss_pred CChHhcchHHHHHHH----HHHHHHHHHHHHHHhcc----------chhhh-hhhhccchHHHHHHHhccchHhhhhhHH
Confidence 578878888888885 56788899999999974 34542 2222345677788999999999999999
Q ss_pred HHHHHHHhhhcCCCCCchHHHH-----HHHhhcC---CChhHHHHHHHHHHHHHhhhcccccchhh--HhHHHHHHHhcc
Q 006253 114 QVVAKVAGIELPHKQWPELIGA-----LLSNIHQ---LPPHTKQATLETLGYICEEVSSDAVEQDH--VNKILTAVVQGM 183 (653)
Q Consensus 114 ~~l~~ia~~~~~~~~~~~l~~~-----l~~~l~~---~~~~~~~~~l~~l~~l~~~~~~~~~~~~~--~~~l~~~l~~~l 183 (653)
-+.++|...+ |. -..+|+.. .++.+.+ -+++.|..+.-+|..|+..+ + .++.. -..++..++..+
T Consensus 534 FIWAKILAvD-~S-CQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf-~--lGQ~acl~~~li~iCle~l 608 (1387)
T KOG1517|consen 534 FIWAKILAVD-PS-CQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNF-K--LGQKACLNGNLIGICLEHL 608 (1387)
T ss_pred HHHHHHHhcC-ch-hHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHccc-c--hhHHHhccccHHHHHHHHh
Confidence 9999999887 42 33344443 2223332 24688888999999999887 2 22222 245777888888
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhhhh-hcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHh
Q 006253 184 NASESNNDVRLAATRALYNALGFAQA-NFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTY 250 (653)
Q Consensus 184 ~~~~~~~~vr~~a~~~l~~~~~~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~ 250 (653)
++ ++.+-+|.-.+-||+.+-+-... ... ..++.-...+...+.++.+++|.+++-+|+.++...
T Consensus 609 nd-~~~pLLrQW~~icLG~LW~d~~~Arw~--G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 609 ND-DPEPLLRQWLCICLGRLWEDYDEARWS--GRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred cC-CccHHHHHHHHHHHHHHhhhcchhhhc--cccccHHHHHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence 84 34688899999999986542211 000 011234556667778899999999999999999864
No 160
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.82 E-value=0.54 Score=51.15 Aligned_cols=156 Identities=12% Similarity=0.072 Sum_probs=99.8
Q ss_pred hHHHHHhhhcCcchhhHHHHHHHHHHhhc--CCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCC
Q 006253 368 VMPFVEENITKQEWRQREAATYAFGSILE--GPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGST 445 (653)
Q Consensus 368 l~~~l~~~l~~~~~~~r~aal~~l~~i~~--~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~ 445 (653)
++.....++++.+-..|-.++-++..... .+.++.+-|.+....|.++..+ .+.+|.+...|+.|+.++++..++
T Consensus 804 Il~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~-~~k~~L~v~~a~~~i~~m~~~sgD-- 880 (1014)
T KOG4524|consen 804 ILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECL-LCKDPLIVQRAFSCIEQMGKYSGD-- 880 (1014)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHH-hcCchHHHHHHHHHHHHHHHHhhh--
Confidence 34444456888888999999888765322 1225777888899999999999 999999999999999999987763
Q ss_pred CCccccCccchHHHHHHHHHhccc-h-----hhH---------HHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHH
Q 006253 446 LETPIINQGNCQQIISVLLQSMKD-V-----PNV---------AEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALL 510 (653)
Q Consensus 446 ~~~~~~~~~~~~~il~~l~~~l~d-~-----~~v---------~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~ 510 (653)
...+.++..++|.+-..+.+ . ..+ +.+...++..|+..++- ..-.+..+..+..
T Consensus 881 ----Fv~sR~l~dvlP~l~~~~~~~~~~~~~~~~~~qta~yKlq~k~i~~~~~~v~~l~l-------~~~~l~~v~e~~~ 949 (1014)
T KOG4524|consen 881 ----FVASRFLEDVLPWLKHLCQDSFARTILKELRIQTAEYKLQLKSISKLVKFVPYLEL-------AGVSLHMVAEGVK 949 (1014)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCcceeeec-------ccccHHHHhhhhh
Confidence 34678889999988766553 1 122 22222222223222211 1112444444443
Q ss_pred HhccccccchhchHHHHHHHHHHHHHhcc
Q 006253 511 TVTHREDAGESRLRTAAYETLNEVVRCST 539 (653)
Q Consensus 511 ~~l~~~~~~~~~~~~~~~~~l~~l~~~~~ 539 (653)
-.+..-+ +..+++.+..++..++..-+
T Consensus 950 I~l~~~~--~q~Lqe~~~s~F~~~V~~ek 976 (1014)
T KOG4524|consen 950 IYLSLIQ--PQVLQEIARSCFLDLVPVEK 976 (1014)
T ss_pred hhHHhcC--hHHHHHHHHHHHHHHhccCC
Confidence 3333222 35677888888887766655
No 161
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.81 E-value=0.027 Score=61.80 Aligned_cols=142 Identities=15% Similarity=0.172 Sum_probs=104.6
Q ss_pred hHHHHHHHHHhcCC--CChhHHHHHHHHHhhhcchhhhhhHHHhhhhccCCChHHHHHHHHHHHHhcC-CCChHHHHHHH
Q 006253 37 GFLLSLAGELVNDE--KPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLS-SPAHDARSTAS 113 (653)
Q Consensus 37 ~~~~~l~~il~~~~--~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~-~~~~~vr~~~~ 113 (653)
.|.+.+.++-.+++ .+|.++++|.+.|.+++- ++.+.-+.-.+.|+..|. ++++.||..+.
T Consensus 919 ~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~----------------iSa~fces~l~llftimeksp~p~IRsN~V 982 (1251)
T KOG0414|consen 919 RFAPIVVEGCRNPGLFSDPELQAAATLALGKLMC----------------ISAEFCESHLPLLFTIMEKSPSPRIRSNLV 982 (1251)
T ss_pred HHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhh----------------hhHHHHHHHHHHHHHHHhcCCCceeeecch
Confidence 45666666665543 368899999999999775 555566666778899887 78899999999
Q ss_pred HHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHH
Q 006253 114 QVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVR 193 (653)
Q Consensus 114 ~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr 193 (653)
.+++.++-. +| +....+-+.+...+.++++.+|+.|+.++..++-. +.+ .+..-++-...++. |++++++
T Consensus 983 valgDlav~-fp-nlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILn---dmi---KVKGql~eMA~cl~--D~~~~Is 1052 (1251)
T KOG0414|consen 983 VALGDLAVR-FP-NLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILN---DMI---KVKGQLSEMALCLE--DPNAEIS 1052 (1251)
T ss_pred heccchhhh-cc-cccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHh---hhh---HhcccHHHHHHHhc--CCcHHHH
Confidence 999999865 46 46667778899999999999999999999987553 211 22333333345556 8999999
Q ss_pred HHHHHHHHHHH
Q 006253 194 LAATRALYNAL 204 (653)
Q Consensus 194 ~~a~~~l~~~~ 204 (653)
..|-..+..+.
T Consensus 1053 dlAk~FF~Els 1063 (1251)
T KOG0414|consen 1053 DLAKSFFKELS 1063 (1251)
T ss_pred HHHHHHHHHhh
Confidence 87766555543
No 162
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=96.76 E-value=0.89 Score=47.33 Aligned_cols=132 Identities=17% Similarity=0.192 Sum_probs=87.8
Q ss_pred cHhhhHHHHHHHHHhhc-----C---CCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHH-HHHHHH
Q 006253 344 NIAMAGGTCLGLVARTV-----G---DDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVN-IALNFM 414 (653)
Q Consensus 344 ~~r~~a~~~L~~l~~~~-----~---~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~-~l~~~l 414 (653)
..+.+|..|+..++... | .++...++ +.+.+|+-.+..+++-++..++-..+ .--..++. +.+..+
T Consensus 392 ~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plv----qll~dp~~~i~~~~lgai~NlVmefs-~~kskfl~~ngId~l 466 (678)
T KOG1293|consen 392 DFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLV----QLLMDPEIMIMGITLGAICNLVMEFS-NLKSKFLRNNGIDIL 466 (678)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHH----HHhhCcchhHHHHHHHHHHHHHhhcc-cHHHHHHHcCcHHHH
Confidence 46778888887776533 2 23333444 44578888888888888888776553 22223333 467788
Q ss_pred HHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhc-cc-hhhHHHHHHHHHHHHHhc
Q 006253 415 LTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSM-KD-VPNVAEKACGALYFLAQG 487 (653)
Q Consensus 415 l~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l-~d-~~~v~~~a~~al~~~~~~ 487 (653)
.+.+ .++.+.+|..+.|+|....=..... .....+..+--.++..+ .| +..|++.+...+.++.-.
T Consensus 467 ~s~~-~~~~~n~r~~~~~~Lr~l~f~~de~------~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 467 ESML-TDPDFNSRANSLWVLRHLMFNCDEE------EKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred HHHh-cCCCchHHHHHHHHHHHHHhcchHH------HHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 8888 9999999999999999887544321 12334444433333333 35 689999999999998765
No 163
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=96.74 E-value=0.026 Score=57.60 Aligned_cols=135 Identities=10% Similarity=0.194 Sum_probs=99.7
Q ss_pred CCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhhcCChhHHH
Q 006253 493 SPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDERE 572 (653)
Q Consensus 493 ~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~ 572 (653)
.+++.+.|+...++..|+..+..... .--+..+.|+-+++...++...|+...+++.+...+.....+ +..+
T Consensus 15 ~~~~di~p~~~~ll~~Lf~~i~~~~s---~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kN----PsnP- 86 (435)
T PF03378_consen 15 FSKADIQPFAQQLLQNLFALIEKPGS---AENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKN----PSNP- 86 (435)
T ss_dssp S-GGGTTCCHHHHHHHHHHHHHTT-S---TC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS-------H-
T ss_pred ECHHHhhhhHHHHHHHHHHHHhcCCC---ccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhC----CCCc-
Confidence 34678999999999999999976432 112367889999999999999999999999999888776543 2232
Q ss_pred hHHHHHHHHHhHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHhc
Q 006253 573 KQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATG 640 (653)
Q Consensus 573 ~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~e~~~~~~~~l~~~~~ 640 (653)
..-..++++++.+.+...+.+ .+.+..+-+.+++.+..+|..+-.+....++-.++.+.+...
T Consensus 87 ---~FnHylFEsi~~lir~~~~~~--~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~ 149 (435)
T PF03378_consen 87 ---RFNHYLFESIGALIRFVCEAD--PEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRP 149 (435)
T ss_dssp ---HHHHHHHHHHHHHHHHS-GGG--HH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS
T ss_pred ---chhhhHHHHHHHHHHhccCCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 344568999999999876542 333556788899999999998766777788889999988877
No 164
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.71 E-value=0.83 Score=47.97 Aligned_cols=193 Identities=15% Similarity=0.096 Sum_probs=115.7
Q ss_pred HHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhcCChh
Q 006253 196 ATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEP 275 (653)
Q Consensus 196 a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 275 (653)
.++.+..++.++++....+...+.++.+++..+..++..+|..++..+..+.....+.=......+..-++..+.|..+.
T Consensus 62 Il~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~ 141 (892)
T KOG2025|consen 62 ILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPN 141 (892)
T ss_pred HHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCch
Confidence 55666666666654333333456788888888888999999999999998887443322233456666777788899999
Q ss_pred HHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHH
Q 006253 276 VALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGL 355 (653)
Q Consensus 276 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~ 355 (653)
||.+|+-.++.+.+.. ++.. + +++..+...+. .| .+..+|++|..++..
T Consensus 142 VRiqAv~aLsrlQ~d~------------~dee--~---------~v~n~l~~liq---nD-----pS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 142 VRIQAVLALSRLQGDP------------KDEE--C---------PVVNLLKDLIQ---ND-----PSDEVRRAALSNISV 190 (892)
T ss_pred HHHHHHHHHHHHhcCC------------CCCc--c---------cHHHHHHHHHh---cC-----CcHHHHHHHHHhhcc
Confidence 9999998877776421 0000 0 01112222222 12 223688877766543
Q ss_pred HHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHH-HHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 006253 356 VARTVGDDIVPLVMPFVEENITKQEWRQREAATYA-FGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTL 434 (653)
Q Consensus 356 l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~-l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l 434 (653)
....+| .+.+.-.|-+-..|..++.. +-.+ +.+. .. ++.-+..+..++ .|....||.++...+
T Consensus 191 -----dnsTlp----~IveRarDV~~anRrlvY~r~lpki-d~r~-ls----i~krv~LlewgL-nDRe~sVk~A~~d~i 254 (892)
T KOG2025|consen 191 -----DNSTLP----CIVERARDVSGANRRLVYERCLPKI-DLRS-LS----IDKRVLLLEWGL-NDREFSVKGALVDAI 254 (892)
T ss_pred -----Ccccch----hHHHHhhhhhHHHHHHHHHHhhhhh-hhhh-hh----HHHHHHHHHHhh-hhhhhHHHHHHHHHH
Confidence 223344 44445556555666655543 3333 3321 22 223445566778 888888888887765
Q ss_pred H
Q 006253 435 G 435 (653)
Q Consensus 435 ~ 435 (653)
-
T Consensus 255 l 255 (892)
T KOG2025|consen 255 L 255 (892)
T ss_pred H
Confidence 4
No 165
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=96.70 E-value=0.8 Score=45.91 Aligned_cols=89 Identities=11% Similarity=0.098 Sum_probs=55.8
Q ss_pred ccccHhhhHHHHHHHHHhhcCC------Cc--hhchHHHHHhh----hc---CcchhhHHHHHHHHHHhhcCCCCCcchH
Q 006253 341 GAWNIAMAGGTCLGLVARTVGD------DI--VPLVMPFVEEN----IT---KQEWRQREAATYAFGSILEGPSPEKLVP 405 (653)
Q Consensus 341 ~~~~~r~~a~~~L~~l~~~~~~------~~--~~~l~~~l~~~----l~---~~~~~~r~aal~~l~~i~~~~~~~~~~~ 405 (653)
..|.-+.+|...++.++..... .+ +-.+.+++.+. +. +..+-.|-.|+..+...-.... ..
T Consensus 267 ~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~----~~ 342 (370)
T PF08506_consen 267 NNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLP----KE 342 (370)
T ss_dssp T-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-----HH
T ss_pred ccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCC----HH
Confidence 3588888888888888875421 11 11233333332 12 3345677777777776665432 35
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 006253 406 LVNIALNFMLTALMQDPNNHVKDTTAWTL 434 (653)
Q Consensus 406 ~l~~l~~~ll~~l~~d~~~~vr~~a~~~l 434 (653)
.+..++|.+...| ++++..|+.-|+.++
T Consensus 343 ~l~~~~~~l~~~L-~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 343 QLLQIFPLLVNHL-QSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHHHHHT-TSS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCCcchhhhhhhhC
Confidence 6788999999999 999999998888764
No 166
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.65 E-value=2 Score=49.72 Aligned_cols=339 Identities=13% Similarity=0.123 Sum_probs=170.1
Q ss_pred HHHHHHHH--hcCCCChHHHHHHHHHHHHHHhhhcCCCCC-----chHHHHHHHhh---cCC-Chh--HHHHHHHHHHHH
Q 006253 92 QIKSFILK--TLSSPAHDARSTASQVVAKVAGIELPHKQW-----PELIGALLSNI---HQL-PPH--TKQATLETLGYI 158 (653)
Q Consensus 92 ~i~~~ll~--~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~-----~~l~~~l~~~l---~~~-~~~--~~~~~l~~l~~l 158 (653)
.+...|++ .|.+++..||--.+.|++.|.+...|+--+ -+++..++..+ .+. +|. .+..-+..+..+
T Consensus 48 pl~~~l~~~~~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~ 127 (1266)
T KOG1525|consen 48 PLADHLIKDFLLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKV 127 (1266)
T ss_pred HHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHh
Confidence 34445554 478899999999999999999998885333 24444444443 222 332 222222333222
Q ss_pred H--hhhc-ccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHH
Q 006253 159 C--EEVS-SDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKI 235 (653)
Q Consensus 159 ~--~~~~-~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~ 235 (653)
. -.+. ++ .++.+..++..+...++. +....+-. +..++.-+-...+ .....++.+++.-+-.+.++.
T Consensus 128 k~~l~~~l~d--~~e~~~~~f~~f~d~~~~-~~~~~v~~-----~~~i~~~li~e~d--~v~~e~L~~ll~~lv~~~~~~ 197 (1266)
T KOG1525|consen 128 KFCLLMLLED--CQELVHELFRTFFDLARK-GHPKKVFN-----MLDIAIMLITEED--TVQSELLDVLLENLVKPGRDT 197 (1266)
T ss_pred HHHheeeccc--hHHHHHHHHHHHHHHHhc-cccHHHHH-----HHHHHHHHHHhhc--cchHHHHHHHHHHhccCCCCc
Confidence 2 1110 11 134455666666666652 12222222 2222211111111 112456666554333333555
Q ss_pred HHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHH
Q 006253 236 RQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIK 315 (653)
Q Consensus 236 ~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (653)
...+...=..++..++..+.+.+...+.-.+..-...--..+.-.-+.+.. ...+..
T Consensus 198 ~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~-----------------------L~~~~p 254 (1266)
T KOG1525|consen 198 IKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILE-----------------------LWRIAP 254 (1266)
T ss_pred cHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHH-----------------------HHHhhH
Confidence 555555555555555555555444433322211000000000000111111 112334
Q ss_pred hhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCC---CchhchHHHHHhhhcCcchhhHHHHHHHHH
Q 006253 316 HALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGD---DIVPLVMPFVEENITKQEWRQREAATYAFG 392 (653)
Q Consensus 316 ~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~---~~~~~l~~~l~~~l~~~~~~~r~aal~~l~ 392 (653)
..+..++|.|...|...+ -..|..|...++.+....+. +..+.++......+.|.+..+|.+++....
T Consensus 255 ~ll~~vip~l~~eL~se~---------~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~ 325 (1266)
T KOG1525|consen 255 QLLLAVIPQLEFELLSEQ---------EEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIK 325 (1266)
T ss_pred HHHHHHHHHHHHHHhcch---------HHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhH
Confidence 445566777776665311 25788888888877664432 345666666667778888999999888877
Q ss_pred HhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc-hh
Q 006253 393 SILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VP 471 (653)
Q Consensus 393 ~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~ 471 (653)
.+.-+. +... ......+.-.. .|.++.+|.+...+++.....- ....+.+.++..+.+.+.| ..
T Consensus 326 ~~l~~~-~~~~----~~~~~~~~l~~-~~~D~~~rir~~v~i~~~~v~~---------~~l~~~~~ll~~~~eR~rDKk~ 390 (1266)
T KOG1525|consen 326 QCLLNN-PSIA----KASTILLALRE-RDLDEDVRVRTQVVIVACDVMK---------FKLVYIPLLLKLVAERLRDKKI 390 (1266)
T ss_pred HHHhcC-chhh----hHHHHHHHHHh-hcCChhhhheeeEEEEEeehhH---------hhhhhhHHHHHHHHHHHhhhhH
Confidence 655432 1211 11111222223 4455555555433332221111 1234555577788888888 68
Q ss_pred hHHHHHHHHHHHHHhc
Q 006253 472 NVAEKACGALYFLAQG 487 (653)
Q Consensus 472 ~v~~~a~~al~~~~~~ 487 (653)
+||..|...+..+-+.
T Consensus 391 ~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 391 KVRKQAMNGLAQLYKN 406 (1266)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999888774
No 167
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.5 Score=45.61 Aligned_cols=176 Identities=23% Similarity=0.222 Sum_probs=109.4
Q ss_pred cCCChHHHHHHHHHHHHHHhh--C-----cchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhccCC
Q 006253 13 QSVDGTVRKQAEESLKQYQEQ--N-----LPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSL 85 (653)
Q Consensus 13 ~s~d~~~r~~A~~~L~~~~~~--~-----~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l 85 (653)
.+.+.+-+-.|.+.|..+-.+ + .-+.+..++..+. +.+..+|..|+.+++..+..++..-+. . +
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~--~~~~~lR~~Aa~Vigt~~qNNP~~Qe~----v---~ 163 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLE--NSDAELRELAARVIGTAVQNNPKSQEQ----V---I 163 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhc--CCcHHHHHHHHHHHHHHHhcCHHHHHH----H---H
Confidence 445788888898888876554 1 2455556666555 458999999999999999866432110 0 0
Q ss_pred ChHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHhhhcCCC----CCchHHHHHHHhhcC--CChhHHHHHHHHHHHH
Q 006253 86 DSSVKAQIKSFILKTLSSPA-HDARSTASQVVAKVAGIELPHK----QWPELIGALLSNIHQ--LPPHTKQATLETLGYI 158 (653)
Q Consensus 86 ~~~~~~~i~~~ll~~l~~~~-~~vr~~~~~~l~~ia~~~~~~~----~~~~l~~~l~~~l~~--~~~~~~~~~l~~l~~l 158 (653)
-..-.+.|+..+.+++ ..+|+++-.+++.+.+...|.. .-+. +..|...+++ .+...+..++..++.+
T Consensus 164 ----E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G-~~~L~~vl~~~~~~~~lkrK~~~Ll~~L 238 (342)
T KOG2160|consen 164 ----ELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNG-YQVLRDVLQSNNTSVKLKRKALFLLSLL 238 (342)
T ss_pred ----HcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCC-HHHHHHHHHcCCcchHHHHHHHHHHHHH
Confidence 0123456777777655 5899999999999999764420 1223 4556666666 4667778888888888
Q ss_pred HhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHH
Q 006253 159 CEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALG 205 (653)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~ 205 (653)
......+ - .......++.....+.. ..+.+++..++.++...+.
T Consensus 239 l~~~~s~-~-d~~~~~~f~~~~~~l~~-~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 239 LQEDKSD-E-DIASSLGFQRVLENLIS-SLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HHhhhhh-h-hHHHHhhhhHHHHHHhh-ccchhhhHHHHHHHHHHHH
Confidence 7765211 1 11122233333332222 3456777777777666554
No 168
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.62 E-value=0.028 Score=52.46 Aligned_cols=142 Identities=18% Similarity=0.303 Sum_probs=104.6
Q ss_pred hhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCc
Q 006253 374 ENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQ 453 (653)
Q Consensus 374 ~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~ 453 (653)
..+.+.+|.....++..+..++... ++.+.+.+..++..+++.+ +.+...|-.+|+-+++.+...+.+. ..
T Consensus 95 ~~L~s~dW~~~vdgLn~irrLs~fh-~e~l~~~L~~vii~vvksl-KNlRS~VsraA~~t~~difs~ln~~-------i~ 165 (334)
T KOG2933|consen 95 KKLSSDDWEDKVDGLNSIRRLSEFH-PESLNPMLHEVIIAVVKSL-KNLRSAVSRAACMTLADIFSSLNNS-------ID 165 (334)
T ss_pred HHhchHHHHHHhhhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHHHHHHH-------HH
Confidence 4567889999999999999999875 5778888999999999999 9999999999999999999988642 22
Q ss_pred cchHHHHHHHHHhcc-chhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHH
Q 006253 454 GNCQQIISVLLQSMK-DVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLN 532 (653)
Q Consensus 454 ~~~~~il~~l~~~l~-d~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~ 532 (653)
+.+..++..|+..-. |+.=|++.|-.||..++....+ . .+++.|...+.... ..+|..+.-++.
T Consensus 166 ~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp--------~----~~L~~L~~~~~~~n---~r~r~~a~~~~~ 230 (334)
T KOG2933|consen 166 QELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP--------Q----KLLRKLIPILQHSN---PRVRAKAALCFS 230 (334)
T ss_pred HHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh--------H----HHHHHHHHHHhhhc---hhhhhhhhcccc
Confidence 345555555544433 3566899999999999886432 1 23444444444333 456667777887
Q ss_pred HHHHhcc
Q 006253 533 EVVRCST 539 (653)
Q Consensus 533 ~l~~~~~ 539 (653)
..+..+|
T Consensus 231 ~~v~rl~ 237 (334)
T KOG2933|consen 231 RCVIRLG 237 (334)
T ss_pred ccceecc
Confidence 7777776
No 169
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=96.57 E-value=0.028 Score=55.67 Aligned_cols=84 Identities=13% Similarity=0.239 Sum_probs=60.7
Q ss_pred HHHhhhhhhHHHHHHHhhhccCCc-cCCCccccHhhhHHHHHHHHHhhcCC---CchhchHHHHHhhhcCcc--hhhHHH
Q 006253 313 FIKHALPVLVPLLLETLLKQEEDQ-DQDEGAWNIAMAGGTCLGLVARTVGD---DIVPLVMPFVEENITKQE--WRQREA 386 (653)
Q Consensus 313 ~~~~~l~~l~~~l~~~l~~~~ed~-~~d~~~~~~r~~a~~~L~~l~~~~~~---~~~~~l~~~l~~~l~~~~--~~~r~a 386 (653)
++.+++..++|.++.++....-.. .+.++.|.+|..|+..+..++..++. .+.|.+...+.+.+.|+. ...+++
T Consensus 251 ~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YG 330 (343)
T cd08050 251 HLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYG 330 (343)
T ss_pred chHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhH
Confidence 567888888888887765332211 11356799999999999999999874 346677777776666543 455899
Q ss_pred HHHHHHHhhc
Q 006253 387 ATYAFGSILE 396 (653)
Q Consensus 387 al~~l~~i~~ 396 (653)
|+..|+.++.
T Consensus 331 Ai~GL~~lG~ 340 (343)
T cd08050 331 AIVGLSALGP 340 (343)
T ss_pred HHHHHHHhCc
Confidence 9999888764
No 170
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=96.53 E-value=0.89 Score=46.50 Aligned_cols=231 Identities=13% Similarity=0.179 Sum_probs=116.1
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhc-----CCChhHHHHHHHHHHHHHhhhccccc
Q 006253 93 IKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIH-----QLPPHTKQATLETLGYICEEVSSDAV 167 (653)
Q Consensus 93 i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~-----~~~~~~~~~~l~~l~~l~~~~~~~~~ 167 (653)
....|+..+.++++.=|..+..++..+.... + +.-+-+...+...+. .....-....+.+++.+...+ ..-+
T Consensus 134 fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~-~-~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf-~~pl 210 (409)
T PF01603_consen 134 FIKKLLELFDSPDPRERDYLKTILHRIYGKF-P-NLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGF-AVPL 210 (409)
T ss_dssp HHHHHHHTTTSSTHHHHHHHHHHHHHHHHH--T-TTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT---SS-
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh-h-hhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhcc-CCCC
Confidence 3345666667777777777777766665543 2 122333222222221 223333445566666666655 2222
Q ss_pred chhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q 006253 168 EQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAIS 247 (653)
Q Consensus 168 ~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~ 247 (653)
..++..-+...++...+. ..-......-..|+..++. .+ ......++..+.......+..-....+.-+..++
T Consensus 211 k~eh~~fl~~vllPLh~~-~~~~~y~~~L~~~~~~f~~---kd---p~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il 283 (409)
T PF01603_consen 211 KEEHKQFLRKVLLPLHKS-PHLSSYHQQLSYCVVQFLE---KD---PSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEIL 283 (409)
T ss_dssp -HHHHHHHHHTTGGGGGS-TGGGGTHHHHHHHHHHHHH---H----GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHH---hC---chhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHH
Confidence 123333333334444332 1111222233344444332 11 1122456666666553333332223445555555
Q ss_pred HHh-HHhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHH
Q 006253 248 STY-YEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLL 326 (653)
Q Consensus 248 ~~~-~~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~ 326 (653)
+.. +..+......++..+.+++.+.+-.|...|+.+|..-.= ...+...-..++|.++
T Consensus 284 ~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~---------------------~~li~~~~~~i~p~i~ 342 (409)
T PF01603_consen 284 EVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYF---------------------LSLISQNSRVILPIIF 342 (409)
T ss_dssp TT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHH---------------------HHHHHCTHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHH---------------------HHHHHhChHHHHHHHH
Confidence 543 345666777888888889999999999999998875321 1223333345666666
Q ss_pred HHhhhccCCccCCCccc--cHhhhHHHHHHHHHhhc
Q 006253 327 ETLLKQEEDQDQDEGAW--NIAMAGGTCLGLVARTV 360 (653)
Q Consensus 327 ~~l~~~~ed~~~d~~~~--~~r~~a~~~L~~l~~~~ 360 (653)
..+...- ...| ++|..|..++..+....
T Consensus 343 ~~L~~~~------~~HWn~~Vr~~a~~vl~~l~~~d 372 (409)
T PF01603_consen 343 PALYRNS------KNHWNQTVRNLAQNVLKILMEMD 372 (409)
T ss_dssp HHHSSTT------SS-SSTTHHHHHHHHHHHHHTTS
T ss_pred HHHHHHH------HHHhhHHHHHHHHHHHHHHHHhC
Confidence 6554211 2357 68888999988887643
No 171
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.49 E-value=0.022 Score=53.09 Aligned_cols=134 Identities=13% Similarity=0.178 Sum_probs=96.9
Q ss_pred ccccHhhhHHHHHHHHHhhcCCCc---hhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHH
Q 006253 341 GAWNIAMAGGTCLGLVARTVGDDI---VPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTA 417 (653)
Q Consensus 341 ~~~~~r~~a~~~L~~l~~~~~~~~---~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~ 417 (653)
++|.....+...+.+++..-++.+ +..++-.+.+.+.+....+-.+|+++++.+..... +.+...++.++-.++..
T Consensus 100 ~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln-~~i~~~ld~lv~~Ll~k 178 (334)
T KOG2933|consen 100 DDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLN-NSIDQELDDLVTQLLHK 178 (334)
T ss_pred HHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhh
Confidence 348877778888888887766544 33444455666777777888999999999988753 44444566666666555
Q ss_pred hcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc-hhhHHHHHHHHHHHHHhccc
Q 006253 418 LMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFE 489 (653)
Q Consensus 418 l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~~~~ 489 (653)
- .+.+..||..|-.+|..+..... .. .+++.|+..+.. +++++..++.++.+.+..++
T Consensus 179 a-~~dnrFvreda~kAL~aMV~~vt---------p~----~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~ 237 (334)
T KOG2933|consen 179 A-SQDNRFVREDAEKALVAMVNHVT---------PQ----KLLRKLIPILQHSNPRVRAKAALCFSRCVIRLG 237 (334)
T ss_pred h-cccchHHHHHHHHHHHHHHhccC---------hH----HHHHHHHHHHhhhchhhhhhhhccccccceecc
Confidence 5 66788999999999999998764 22 445555555554 79999999988888877654
No 172
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.46 E-value=0.3 Score=47.68 Aligned_cols=110 Identities=15% Similarity=0.172 Sum_probs=85.8
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchh--
Q 006253 93 IKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQD-- 170 (653)
Q Consensus 93 i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~-- 170 (653)
+...++.++.++++.+|..+..|+|..+-.+. ..-.+.++.+.+.+..++..++..|++++..++-..+.+.++..
T Consensus 28 l~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~--~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~ 105 (298)
T PF12719_consen 28 LDSLILPAVQSSDPAVRELALKCLGLCCLLDK--ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESD 105 (298)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh--HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhc
Confidence 34455589999999999999999999987762 24467788888888777899999999999998887754444211
Q ss_pred -----hHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHh
Q 006253 171 -----HVNKILTAVVQGMNASESNNDVRLAATRALYNALGF 206 (653)
Q Consensus 171 -----~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~ 206 (653)
....+...+.+.+. +.+++++..|++.+..++-.
T Consensus 106 ~~~~~~~~~l~~~l~~~l~--~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 106 NDESVDSKSLLKILTKFLD--SENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred cCccchHhHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHhc
Confidence 23567778888888 45889999999999987753
No 173
>PF05536 Neurochondrin: Neurochondrin
Probab=96.41 E-value=1.7 Score=46.23 Aligned_cols=188 Identities=11% Similarity=0.051 Sum_probs=114.6
Q ss_pred cHhhhHHHHHHHHHhhc---CCCchhchHHHHHhhhcCcch-hhHHHHHHHHHHhhcCCCCCcchHHHH-HHHHHHHHHh
Q 006253 344 NIAMAGGTCLGLVARTV---GDDIVPLVMPFVEENITKQEW-RQREAATYAFGSILEGPSPEKLVPLVN-IALNFMLTAL 418 (653)
Q Consensus 344 ~~r~~a~~~L~~l~~~~---~~~~~~~l~~~l~~~l~~~~~-~~r~aal~~l~~i~~~~~~~~~~~~l~-~l~~~ll~~l 418 (653)
..+..|...|..++..- .++-+-.-+|.+.+.+.+.+- ..-.-++.+|..++.. ++....++. +.++.+...+
T Consensus 72 ~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~--~~G~~aLl~~g~v~~L~ei~ 149 (543)
T PF05536_consen 72 EYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASS--PEGAKALLESGAVPALCEII 149 (543)
T ss_pred HHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC--cHhHHHHHhcCCHHHHHHHH
Confidence 45556666666666521 112223345555566655443 6667788888888854 344444333 3567777766
Q ss_pred cCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc-hhhHHHHHHHHHHHHHhcccCCCCCCCC
Q 006253 419 MQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSP 497 (653)
Q Consensus 419 ~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~~~~~~~~~~~~ 497 (653)
.+ ++...+.|+.++..+......... ......+..+++.+-..+.. ....+-..|.-+..+.............
T Consensus 150 -~~-~~~~~E~Al~lL~~Lls~~~~~~~---~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~ 224 (543)
T PF05536_consen 150 -PN-QSFQMEIALNLLLNLLSRLGQKSW---AEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPP 224 (543)
T ss_pred -Hh-CcchHHHHHHHHHHHHHhcchhhh---hhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCC
Confidence 43 778899999998888776542110 01334555666666666553 3444557788888888765210000112
Q ss_pred CchhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhccc
Q 006253 498 LTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTD 540 (653)
Q Consensus 498 l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~ 540 (653)
-......+...+..++++.-. ..-|..++...+.+.+..|.
T Consensus 225 ~~~W~~~l~~gl~~iL~sr~~--~~~R~~al~Laa~Ll~~~G~ 265 (543)
T PF05536_consen 225 SPKWLSDLRKGLRDILQSRLT--PSQRDPALNLAASLLDLLGP 265 (543)
T ss_pred hhhhHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHhCh
Confidence 234778888888888876553 56688899999999988884
No 174
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=96.38 E-value=1.2 Score=44.04 Aligned_cols=350 Identities=12% Similarity=0.125 Sum_probs=167.2
Q ss_pred hcCCCChHHHHHHHHHHHHHHhhhcCC------CCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccc--cchhh
Q 006253 100 TLSSPAHDARSTASQVVAKVAGIELPH------KQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDA--VEQDH 171 (653)
Q Consensus 100 ~l~~~~~~vr~~~~~~l~~ia~~~~~~------~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~--~~~~~ 171 (653)
+....+..++.-.+.|++.++..+... +.-.++++-|.+..+|++..+...+.++|+.+|....... +.+-.
T Consensus 50 ~i~~~~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lg 129 (604)
T KOG4500|consen 50 GIMTASDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLG 129 (604)
T ss_pred ceeeccchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcC
Confidence 344455677888888888777543211 1225777888888888888899999999999987642110 10111
Q ss_pred HhHHHHHHHhcc-cCCCC-CHHHHHHHHHHHHHHHHhhhhhcCChhHHH-----HHHHHHHhhh--cCCcHHHHHHHHHH
Q 006253 172 VNKILTAVVQGM-NASES-NNDVRLAATRALYNALGFAQANFSNDMERD-----YIMRVVCEAT--LSPEVKIRQAAFEC 242 (653)
Q Consensus 172 ~~~l~~~l~~~l-~~~~~-~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~-----~il~~l~~~~--~~~~~~~~~~~~~~ 242 (653)
..+++--++... ..+++ +.+....+...+.+ |+- +.+..+. .+++.+.... ..++....+..+-.
T Consensus 130 Gaqivid~L~~~cs~d~~ane~~~~v~~g~l~N---y~l---~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~ 203 (604)
T KOG4500|consen 130 GAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHN---YIL---DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAP 203 (604)
T ss_pred CceehHhhhccccccCCccHHHHHHHHHHHHHH---hhC---CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhc
Confidence 112222222222 21122 22333334444444 321 1222222 2455443332 12233333333322
Q ss_pred HHHHHHHhHHhhHHhHH--HHHHHHHHHhh-cCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhh
Q 006253 243 LVAISSTYYEKLAPYIQ--DIFNITAKAVR-EDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALP 319 (653)
Q Consensus 243 l~~l~~~~~~~~~~~l~--~l~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 319 (653)
+..+.+...+.+.++-. .+...+.+.+. ...++.+..+++.+...++.. ..+..+.+.
T Consensus 204 f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend----------------~Vkl~la~~--- 264 (604)
T KOG4500|consen 204 FFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAEND----------------LVKLSLAQN--- 264 (604)
T ss_pred cccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCc----------------ceeeehhhc---
Confidence 22222222222222211 22222333333 245677778888777666531 011122221
Q ss_pred hhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCCc------hhchHHHHHhhhcCcchhhHHHHHHHHHH
Q 006253 320 VLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDI------VPLVMPFVEENITKQEWRQREAATYAFGS 393 (653)
Q Consensus 320 ~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~~------~~~l~~~l~~~l~~~~~~~r~aal~~l~~ 393 (653)
.++..+++.+....++.+..| ..+.-+-+.+..-.+ ..|++- -|.++.++..++.+.+....-++..++|.
T Consensus 265 gl~e~~~~lv~~~k~~t~k~d-~~~l~k~~~el~vll--ltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigN 341 (604)
T KOG4500|consen 265 GLLEDSIDLVRNMKDFTKKTD-MLNLFKRIAELDVLL--LTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGN 341 (604)
T ss_pred chHHHHHHHHHhcccccchHH-HHHHHHhhhhHhhhh--hcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 122222222222111111001 111111111111111 114432 35688899999999988888999999999
Q ss_pred hhcCCCCCcc----hHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccch-HHHHHHHHHhcc
Q 006253 394 ILEGPSPEKL----VPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNC-QQIISVLLQSMK 468 (653)
Q Consensus 394 i~~~~~~~~~----~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~-~~il~~l~~~l~ 468 (653)
++..-+ .-+ ..+++.++..+.+.=.-|.+.+++++++.+|.++.--..+. ..+. ..+.+.++..+.
T Consensus 342 faR~D~-~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nk--------a~~~~aGvteaIL~~lk 412 (604)
T KOG4500|consen 342 FARRDD-ICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNK--------AHFAPAGVTEAILLQLK 412 (604)
T ss_pred hhccch-HHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCch--------hhccccchHHHHHHHHH
Confidence 987521 111 12344444444331113678899999999999987644321 1111 123444444444
Q ss_pred c-hhhHHHHHHHHHHHHHh
Q 006253 469 D-VPNVAEKACGALYFLAQ 486 (653)
Q Consensus 469 d-~~~v~~~a~~al~~~~~ 486 (653)
. .|+|.-.-...+..+.+
T Consensus 413 ~~~ppv~fkllgTlrM~~d 431 (604)
T KOG4500|consen 413 LASPPVTFKLLGTLRMIRD 431 (604)
T ss_pred hcCCcchHHHHHHHHHHHh
Confidence 3 56776666666665554
No 175
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=96.38 E-value=0.36 Score=41.32 Aligned_cols=152 Identities=14% Similarity=0.172 Sum_probs=84.2
Q ss_pred HHHHHHHHhcCCCC--hHHHHHHHHHHHHHHhhh--cCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHH-hhhcccc
Q 006253 92 QIKSFILKTLSSPA--HDARSTASQVVAKVAGIE--LPHKQWPELIGALLSNIHQLPPHTKQATLETLGYIC-EEVSSDA 166 (653)
Q Consensus 92 ~i~~~ll~~l~~~~--~~vr~~~~~~l~~ia~~~--~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~-~~~~~~~ 166 (653)
.|++.|+.+|..++ ...-+.++.+++.+|... ++.+.|+++-+.+.... ..++ ..|..++..+. ... .+.
T Consensus 3 eikplLIsCL~~q~~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~-~~e~---~kA~~IF~~L~~~l~-~ef 77 (174)
T PF04510_consen 3 EIKPLLISCLTMQETKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLS-ENEP---VKAFHIFICLPMPLY-GEF 77 (174)
T ss_pred chHHHHHHHHHhhcccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhh-ccch---HHHHHHHHhCCchhh-hhH
Confidence 47888999998654 344456666666666543 36679999988777654 2333 44666666665 333 455
Q ss_pred cchhhHhHHHHHHHhcccCCC-CCHHHHHHHHH-HHHHHHHhhhhhcCChhHH---HHHHHHHHhhhcCCcH-HHHHHHH
Q 006253 167 VEQDHVNKILTAVVQGMNASE-SNNDVRLAATR-ALYNALGFAQANFSNDMER---DYIMRVVCEATLSPEV-KIRQAAF 240 (653)
Q Consensus 167 ~~~~~~~~l~~~l~~~l~~~~-~~~~vr~~a~~-~l~~~~~~~~~~~~~~~~~---~~il~~l~~~~~~~~~-~~~~~~~ 240 (653)
+ .+.++.+++.+.+.|.++. .+.+....|+. ++...++.+......+..+ ..+++.+..++....+ .....++
T Consensus 78 l-~~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~mv~Sv~elV~~g~E~~~l~rgl 156 (174)
T PF04510_consen 78 L-IPFMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMRVDLVKELLPKMVKSVKELVERGMEVGFLRRGL 156 (174)
T ss_pred H-HHHHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 5 6788899999999998531 23333344443 2333333332211111111 2234444444444333 5555566
Q ss_pred HHHHHHHHH
Q 006253 241 ECLVAISST 249 (653)
Q Consensus 241 ~~l~~l~~~ 249 (653)
+-+-.+++.
T Consensus 157 ~~~e~~v~~ 165 (174)
T PF04510_consen 157 RDFESFVSR 165 (174)
T ss_pred HHHHHHHHH
Confidence 655555543
No 176
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=96.34 E-value=1.1 Score=50.36 Aligned_cols=158 Identities=13% Similarity=0.206 Sum_probs=112.9
Q ss_pred CCCc--hHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHh-----cccC---CCCCHHHHHHH
Q 006253 127 KQWP--ELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQ-----GMNA---SESNNDVRLAA 196 (653)
Q Consensus 127 ~~~~--~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~-----~l~~---~~~~~~vr~~a 196 (653)
..|| .+++.|.+.+-++.+.+|+++..++..+.+.. .+.++....+.++..++. .+.+ +.--..||.+.
T Consensus 71 ~~w~f~s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h-~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~c 149 (1549)
T KOG0392|consen 71 RQWPFLSFLEELVNDLFEPQWEIRHGAAIALREILKTH-GDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREAC 149 (1549)
T ss_pred ccccHHHHHHHHHHHhcCchhhhhcCcchhhhhHHHHh-cchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHH
Confidence 4675 68889999999999999999999999998876 444433334444333321 1121 12344689999
Q ss_pred HHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhcCChhH
Q 006253 197 TRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPV 276 (653)
Q Consensus 197 ~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 276 (653)
.++|..++.++... -+...++++.+....+.++++...+..+...+....+.+...+..+++.++..+.+.++++
T Consensus 150 aq~L~~~l~~~~~s-----~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds~ddv 224 (1549)
T KOG0392|consen 150 AQALGAYLKHMDES-----LIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDSDDDV 224 (1549)
T ss_pred HHHHHHHHHhhhhH-----hhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHH
Confidence 99999988765432 2356777777777777889888877777666665555555666778888888999999999
Q ss_pred HHHHHHhHHHhhHH
Q 006253 277 ALQAIEFWSSVCDE 290 (653)
Q Consensus 277 ~~~a~~~~~~~~~~ 290 (653)
+..|..++..++..
T Consensus 225 ~~~aa~~l~~~~s~ 238 (1549)
T KOG0392|consen 225 RSVAAQFLVPAPSI 238 (1549)
T ss_pred HHHHHHHhhhhhHH
Confidence 99998887777654
No 177
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=96.32 E-value=0.042 Score=47.87 Aligned_cols=124 Identities=15% Similarity=0.143 Sum_probs=80.7
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc-hhhHHHHHHHHHHHHHh
Q 006253 408 NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQ 486 (653)
Q Consensus 408 ~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~ 486 (653)
+..+|.++..+ ......-|--|...+..+.+... +....+.+++++..+-.++.. ++.|...+..+|..++.
T Consensus 37 ~~~Lpif~dGL-~Et~~Py~flA~~g~~dll~~~~------~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~ 109 (183)
T PF10274_consen 37 HHYLPIFFDGL-RETEHPYRFLARQGIKDLLERGG------GEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVT 109 (183)
T ss_pred hhHHHHHHhhh-hccCccHHHHHHHHHHHHHHhcc------hhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 44567777777 55444555566666666666622 123457778888888888886 79999999999999954
Q ss_pred cccCCCCCCCCCchhHHHHHHHHHHhccccc--------cchhchHHHHHHHHHHHHHhcccc
Q 006253 487 GFEDAISPSSPLTPFFQEIVQALLTVTHRED--------AGESRLRTAAYETLNEVVRCSTDE 541 (653)
Q Consensus 487 ~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~--------~~~~~~~~~~~~~l~~l~~~~~~~ 541 (653)
... ..+..+.||+..++|.+--..+... ....+++...-++|..+-+..|++
T Consensus 110 ~~~---~vG~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~d 169 (183)
T PF10274_consen 110 SSD---MVGEALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPD 169 (183)
T ss_pred hhh---hhhHHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChh
Confidence 322 1246799999999998874443321 002455556666666666666654
No 178
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=96.24 E-value=0.046 Score=43.64 Aligned_cols=100 Identities=19% Similarity=0.325 Sum_probs=75.3
Q ss_pred CCchhHHHHHHHHHHhccc---cccchhchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhhcCChhHHHh
Q 006253 497 PLTPFFQEIVQALLTVTHR---EDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREK 573 (653)
Q Consensus 497 ~l~~~l~~i~~~L~~~l~~---~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ 573 (653)
.+.+++-.+++.+-..+.+ .. +...|..++.+++.+++..| +++....|.++..|+..++ .+
T Consensus 4 fL~~~~Lgil~~f~~~l~d~~~~~--~~~ek~~~l~si~~lI~~~~----~~i~~~~pQI~a~L~sal~-------~~-- 68 (107)
T PF08064_consen 4 FLQPHILGILTRFSDVLNDLRGKK--PIPEKKRALRSIEELIKLGG----SHISSARPQIMACLQSALE-------IP-- 68 (107)
T ss_pred HHHHHHHHHHHHHHHHHhccccCC--CHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHhC-------Ch--
Confidence 4667777888888777766 22 24556789999999999666 4666666777777776542 11
Q ss_pred HHHHHHHHHhHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHh
Q 006253 574 QNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFA 618 (653)
Q Consensus 574 ~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~ 618 (653)
+++..+++|...+.+.++..+ +.|.+++++..+++.++
T Consensus 69 --~l~~~al~~W~~fi~~L~~~~-----l~~ll~~~~~~l~~~~~ 106 (107)
T PF08064_consen 69 --ELREEALSCWNCFIKTLDEED-----LGPLLDQIFAILLPLWD 106 (107)
T ss_pred --hhHHHHHHHHHHHHHHCCHHH-----HHHHHHHHHHHHHHhcc
Confidence 467779999999999999876 88999998888877654
No 179
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.24 E-value=0.7 Score=48.35 Aligned_cols=203 Identities=9% Similarity=0.137 Sum_probs=123.4
Q ss_pred hhccCCChHHHHHHHHHHHHhcC-----CCChHHHHHHHHHHHHHHhhhcCCCCCchHH-----HHHHHhhcCCChhHHH
Q 006253 80 QRWLSLDSSVKAQIKSFILKTLS-----SPAHDARSTASQVVAKVAGIELPHKQWPELI-----GALLSNIHQLPPHTKQ 149 (653)
Q Consensus 80 ~~~~~l~~~~~~~i~~~ll~~l~-----~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~-----~~l~~~l~~~~~~~~~ 149 (653)
..|..-+-+..++|-+..++.+. .+.+.+....-.+++.++..---.+...+++ |.|...++.++..+|-
T Consensus 113 rAWkea~~dL~eeiE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~Vrs 192 (1005)
T KOG1949|consen 113 RAWKEASGDLLEEIENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRS 192 (1005)
T ss_pred HHHHHhccchHHHHhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhh
Confidence 45665555666666665555443 2334555556666676664321101223333 4456667888999999
Q ss_pred HHHHHHHHHHhhhcccccchhhHhHHHH----HHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHH
Q 006253 150 ATLETLGYICEEVSSDAVEQDHVNKILT----AVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVC 225 (653)
Q Consensus 150 ~~l~~l~~l~~~~~~~~~~~~~~~~l~~----~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~ 225 (653)
.|+..+-.+....+|+.- .+.++.+++ .+...+. |+-+.||..|++-+.....-++..+- ......++..++
T Consensus 193 nAa~lf~~~fP~~dpd~~-~e~mD~i~~kQf~~l~~LL~--d~~p~VRS~a~~gv~k~~s~fWe~iP-~~i~~~ll~kI~ 268 (1005)
T KOG1949|consen 193 NAALLFVEAFPIRDPDLH-AEEMDSIIQKQFEELYSLLE--DPYPMVRSTAILGVCKITSKFWEMIP-PTILIDLLKKIT 268 (1005)
T ss_pred hHHHHHHHhccCCCCCcc-HHHHHHHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHH
Confidence 999888776665545542 344444444 3456666 88899999888877776553333221 111233444443
Q ss_pred hhh-cCCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhh
Q 006253 226 EAT-LSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVC 288 (653)
Q Consensus 226 ~~~-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~ 288 (653)
.-+ .+...++|-+++++|..++..... -+.++.++|.+-..+.|..+.||..+.+.+..+-
T Consensus 269 d~~a~dt~s~VR~svf~gl~~~l~np~s--h~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 269 DELAFDTSSDVRCSVFKGLPMILDNPLS--HPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred HHhhhccchheehhHhcCcHHHHcCccc--hhHHHHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 322 345679999999999988875332 3556777776667788888888877776665543
No 180
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=96.11 E-value=0.057 Score=59.76 Aligned_cols=169 Identities=15% Similarity=0.216 Sum_probs=115.8
Q ss_pred hhhHHHHHHHHHhhcCCC---chhchHHHHHhhhcC----cc-hhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHH
Q 006253 346 AMAGGTCLGLVARTVGDD---IVPLVMPFVEENITK----QE-WRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTA 417 (653)
Q Consensus 346 r~~a~~~L~~l~~~~~~~---~~~~l~~~l~~~l~~----~~-~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~ 417 (653)
|+.|..+|..++..+|.. .+|.+..++...+.. .+ ...+...+..+...++ ..+.+ +-...|.++.+
T Consensus 750 rrgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~~d~~~~s~~vf~s~~~~m~----s~l~~-~~~~l~~l~~~ 824 (1549)
T KOG0392|consen 750 RRGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDGNDEFLSSFEVFNSLAPLMH----SFLHP-LGSLLPRLFFF 824 (1549)
T ss_pred hhhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCCCcchhhhHHHHHHHHHhhh----hhhhh-hhhhhhHHHHh
Confidence 678899999999999864 356666665544432 21 1111112222222222 22333 44667888888
Q ss_pred hcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc-hhhHHHHHH-HHHHHHHhcccCCCCCC
Q 006253 418 LMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKAC-GALYFLAQGFEDAISPS 495 (653)
Q Consensus 418 l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~-~al~~~~~~~~~~~~~~ 495 (653)
+ .+.++.+|.+++.|++.+.+... .+.+..+++.++..+++ +.-++..++ -.+..++..+ .
T Consensus 825 ~-~s~~~a~r~~~ar~i~~~~k~~~----------~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l------~ 887 (1549)
T KOG0392|consen 825 V-RSIHIAVRYAAARCIGTMFKSAT----------RETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVL------M 887 (1549)
T ss_pred c-ccchHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhh------c
Confidence 8 99999999999999999988653 56777888888888876 344444444 4444555443 3
Q ss_pred CCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhcc
Q 006253 496 SPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCST 539 (653)
Q Consensus 496 ~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~ 539 (653)
..+.||.+-+++.|+..+.+.. ..+|..+-+++..++...+
T Consensus 888 ~~l~~~~~Llv~pllr~msd~~---d~vR~aat~~fa~lip~~~ 928 (1549)
T KOG0392|consen 888 VGLVPYNPLLVVPLLRRMSDQI---DSVREAATKVFAKLIPLLP 928 (1549)
T ss_pred ccccccceeehhhhhcccccch---HHHHHHHHHHHHHHhcccc
Confidence 5688999999999999988765 5789999999999998776
No 181
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.10 E-value=2.5 Score=45.18 Aligned_cols=157 Identities=13% Similarity=0.123 Sum_probs=99.3
Q ss_pred CchHHHHHHHhhcCC-ChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhh
Q 006253 129 WPELIGALLSNIHQL-PPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFA 207 (653)
Q Consensus 129 ~~~l~~~l~~~l~~~-~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~ 207 (653)
-.+.++.|...+-+. -..-|+.|+..|..+++.+... .+...++. +++.|..+-.++++-..++.++..+...-
T Consensus 20 ~aETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~-Vga~Gmk~----li~vL~~D~~D~E~ik~~LdTl~il~~~d 94 (970)
T KOG0946|consen 20 AAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREE-VGAQGMKP----LIQVLQRDYMDPEIIKYALDTLLILTSHD 94 (970)
T ss_pred HHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHH-HHHcccHH----HHHHHhhccCCHHHHHHHHHHHHHHHhcC
Confidence 346777777776443 4566788888888888777222 21223333 33444432356777788888877766543
Q ss_pred h--hhcCChh------HH--------HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhH---HHHHHHHHHH
Q 006253 208 Q--ANFSNDM------ER--------DYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYI---QDIFNITAKA 268 (653)
Q Consensus 208 ~--~~~~~~~------~~--------~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l---~~l~~~~~~~ 268 (653)
. ...++.. .| ...+..+..++...|..+|..+++.+..+.+..|..+...+ |.-+..+...
T Consensus 95 d~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdl 174 (970)
T KOG0946|consen 95 DSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDL 174 (970)
T ss_pred cchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHH
Confidence 1 0001100 00 12456677777788999999999999999999886655433 3334445556
Q ss_pred hhcCChhHHHHHHHhHHHhhHH
Q 006253 269 VREDEEPVALQAIEFWSSVCDE 290 (653)
Q Consensus 269 ~~~~~~~~~~~a~~~~~~~~~~ 290 (653)
+.|..+.+|-.++-++..+...
T Consensus 175 L~DsrE~IRNe~iLlL~eL~k~ 196 (970)
T KOG0946|consen 175 LRDSREPIRNEAILLLSELVKD 196 (970)
T ss_pred HhhhhhhhchhHHHHHHHHHcc
Confidence 6777788888888887777753
No 182
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=96.09 E-value=0.15 Score=44.27 Aligned_cols=121 Identities=18% Similarity=0.300 Sum_probs=81.1
Q ss_pred chh--HHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhcccccH-----------------------------HHHH
Q 006253 499 TPF--FQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETA-----------------------------PMVM 547 (653)
Q Consensus 499 ~~~--l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-----------------------------~~~~ 547 (653)
.|| +|.+++.|++++.+.. ...+|.+++.++|.+-...+-.+. |..+
T Consensus 3 ~PY~~yP~LL~~L~~iLk~e~--s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e 80 (160)
T PF11865_consen 3 DPYLDYPELLDILLNILKTEQ--SQSIRREALRVLGILGALDPYKHKSIQKSLDSKSSENSNDESTDISLPMMGISPSSE 80 (160)
T ss_pred chHHHhHHHHHHHHHHHHhCC--CHHHHHHHHHHhhhccccCcHHHhcccccCCccccccccccchhhHHhhccCCCchH
Confidence 455 4789999999998775 478999999999988332220000 0011
Q ss_pred HH-----HHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHhHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccCc
Q 006253 548 QL-----VPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSA 622 (653)
Q Consensus 548 ~l-----~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~ 622 (653)
+. +..+++.+++ +. ...-...++.++-.+.+.+|.. ..||++++++.+++.+....+
T Consensus 81 e~y~~vvi~~L~~iL~D-----------~s-Ls~~h~~vv~ai~~If~~l~~~------cv~~L~~viP~~l~~i~~~~~ 142 (160)
T PF11865_consen 81 EYYPTVVINALMRILRD-----------PS-LSSHHTAVVQAIMYIFKSLGLK------CVPYLPQVIPIFLRVIRTCPD 142 (160)
T ss_pred HHHHHHHHHHHHHHHHh-----------hh-hHHHHHHHHHHHHHHHHhcCcC------chhHHHHHhHHHHHHHHhCCH
Confidence 11 1222222221 11 1122335778888899998888 899999999999999998777
Q ss_pred chhhhHHHHHHHHHHHh
Q 006253 623 TAHEEAMLAIGALAYAT 639 (653)
Q Consensus 623 ~~~e~~~~~~~~l~~~~ 639 (653)
.++|..+.-++.+....
T Consensus 143 ~~~e~~~~qL~~lv~iv 159 (160)
T PF11865_consen 143 SLREFYFQQLADLVSIV 159 (160)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 88999888888877654
No 183
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=96.03 E-value=6.1 Score=48.97 Aligned_cols=239 Identities=18% Similarity=0.241 Sum_probs=137.6
Q ss_pred HHhhhcCcchhhHHHHHHHHHHhhcCC---C---CCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCC
Q 006253 372 VEENITKQEWRQREAATYAFGSILEGP---S---PEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGST 445 (653)
Q Consensus 372 l~~~l~~~~~~~r~aal~~l~~i~~~~---~---~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~ 445 (653)
+...+...+...|..+...+..+.... + +... .++..++..++..-..|+++.+|.+....+. +.+.
T Consensus 486 ~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~-~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~---~~~~--- 558 (2341)
T KOG0891|consen 486 VDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHAL-QVVKEVLSALLTVAIADTDPDIRIRVLSSLN---ERFD--- 558 (2341)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHH-HHHHHHHHHHHHHhccCCCcchhhhHHhhhc---cchh---
Confidence 344555566677777766555544321 1 1111 2344555555544327888999998887776 1111
Q ss_pred CCccccCccchHHHHHHHHHhccc-hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccchhchH
Q 006253 446 LETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLR 524 (653)
Q Consensus 446 ~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~ 524 (653)
..---+..+..+...+++ .-..+..+...++++++. +++.+.|++......+.+-++-+.. ....
T Consensus 559 ------~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~------~~a~vl~~lr~~~l~~~s~l~~sg~--~r~~ 624 (2341)
T KOG0891|consen 559 ------AQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSY------NPAYVLPSLRKTLLELLTELEFSGM--ARTK 624 (2341)
T ss_pred ------hhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccc------cHHHHhHHHHHHHHHHhchhhhcch--HHhH
Confidence 111223344556666665 567777777777766652 2444555555555544444433321 1122
Q ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHhHHHHHHHHhCCCcchhhHhhH
Q 006253 525 TAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQ 604 (653)
Q Consensus 525 ~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~ 604 (653)
.....-+..++.....-..||..+++..++..+.+. +. .+...+..+++.++...|.. +..
T Consensus 625 ~~~a~~~~~~i~~~~~~i~~~v~~~l~~~~~~~~~~--------~s-----~~~~~~~~~~~eL~~v~g~~------~~~ 685 (2341)
T KOG0891|consen 625 EESAKLLCELIISSPVLISPYVGPILLVLLPKLQDP--------SS-----GVEKAVLETIGELCAVGGEE------MVK 685 (2341)
T ss_pred HHHHHHhhHHHHHHHHHHHhhcCchHHHHHHHHhcc--------ch-----hhHHHHHHHHHHHHHhccch------hhh
Confidence 222222233333333334566666555554444431 11 23345789999999998877 777
Q ss_pred hHHHHHHHHHHHHhccCc-chhhhHHHHHHHHHHHhccCCccc---hhhh
Q 006253 605 YADQMMGLFLRVFAIRSA-TAHEEAMLAIGALAYATGLWRIRY---CLIV 650 (653)
Q Consensus 605 ~~~~i~~~l~~~l~~~~~-~~~e~~~~~~~~l~~~~~~~f~~y---~~i~ 650 (653)
++..++..+.+.+...+. .-|..+..+++.+...-|--..|| |.++
T Consensus 686 ~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~~~v~p~~~~P~ll 735 (2341)
T KOG0891|consen 686 WVDELFSLIIKMLQDQSSLGKRLAALKALGQLESSTGYVVDPYLDYPELL 735 (2341)
T ss_pred ccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccceEecccccChHHH
Confidence 778888888888876433 345678889999999988888888 6543
No 184
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=95.99 E-value=0.057 Score=42.79 Aligned_cols=102 Identities=21% Similarity=0.330 Sum_probs=74.7
Q ss_pred CCCchhHHHHHHHHHHhccccccc-hhchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhH
Q 006253 496 SPLTPFFQEIVQALLTVTHREDAG-ESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQ 574 (653)
Q Consensus 496 ~~l~~~l~~i~~~L~~~l~~~~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~ 574 (653)
..+.+++-.+++.+-..+.+.+.. +-.-|..++.+++.+++..| +++....|.++..|+..++ .
T Consensus 3 ~fL~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g----~~i~~a~pQI~acL~saL~-------~---- 67 (107)
T smart00802 3 DFLKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMG----KHISSALPQIMACLQSALE-------I---- 67 (107)
T ss_pred HHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhC-------c----
Confidence 346678888888888887766521 12346789999999999877 4666666667777776542 1
Q ss_pred HHHHHHHHhHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHH
Q 006253 575 NEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVF 617 (653)
Q Consensus 575 ~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~l~~~l 617 (653)
.++|..+++|...+...+...+ ..|.+.+++..+.+.+
T Consensus 68 ~eL~~~al~~W~~~i~~L~~~~-----l~~ll~~~~~~i~~~~ 105 (107)
T smart00802 68 PELRSLALRCWHVLIKTLKEEE-----LGPLLDQIFAAILPLW 105 (107)
T ss_pred hhHHHHHHHHHHHHHHhCCHHH-----HHHHHHHHHHHHHHhc
Confidence 2477889999999999999876 7788888777776654
No 185
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.12 Score=49.65 Aligned_cols=147 Identities=17% Similarity=0.178 Sum_probs=97.4
Q ss_pred CcchhhHHHHHHHHHHhhcCCCCCcchHHH-HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccch
Q 006253 378 KQEWRQREAATYAFGSILEGPSPEKLVPLV-NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNC 456 (653)
Q Consensus 378 ~~~~~~r~aal~~l~~i~~~~~~~~~~~~l-~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 456 (653)
+.+...|+.|+.-|-.+++..+ .-..+. ...+..++..+ ++.+..+|+.|+|++|..+..-+. .....+
T Consensus 94 s~~le~ke~ald~Le~lve~iD--nAndl~~~ggl~~ll~~l-~~~~~~lR~~Aa~Vigt~~qNNP~-------~Qe~v~ 163 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDID--NANDLISLGGLVPLLGYL-ENSDAELRELAARVIGTAVQNNPK-------SQEQVI 163 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhh--hHHhHhhccCHHHHHHHh-cCCcHHHHHHHHHHHHHHHhcCHH-------HHHHHH
Confidence 3457889999999998888653 111111 13355566688 999999999999999999876541 111111
Q ss_pred H-HHHHHHHHhcc-c-hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHH-HHHHHHHHhccccccchhchHHHHHHHHH
Q 006253 457 Q-QIISVLLQSMK-D-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQ-EIVQALLTVTHREDAGESRLRTAAYETLN 532 (653)
Q Consensus 457 ~-~il~~l~~~l~-d-~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~-~i~~~L~~~l~~~~~~~~~~~~~~~~~l~ 532 (653)
+ ..++.|+..+. + +..+|.+|..|++.++.+..+. ...|+. .=+..|..+++..+. +..++..++..++
T Consensus 164 E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g------~~~fl~~~G~~~L~~vl~~~~~-~~~lkrK~~~Ll~ 236 (342)
T KOG2160|consen 164 ELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPG------QDEFLKLNGYQVLRDVLQSNNT-SVKLKRKALFLLS 236 (342)
T ss_pred HcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHH------HHHHHhcCCHHHHHHHHHcCCc-chHHHHHHHHHHH
Confidence 1 23455555555 3 4678899999999999985432 223322 126677778876432 3567778999999
Q ss_pred HHHHhcccc
Q 006253 533 EVVRCSTDE 541 (653)
Q Consensus 533 ~l~~~~~~~ 541 (653)
.+++....+
T Consensus 237 ~Ll~~~~s~ 245 (342)
T KOG2160|consen 237 LLLQEDKSD 245 (342)
T ss_pred HHHHhhhhh
Confidence 998876643
No 186
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=95.78 E-value=0.3 Score=47.12 Aligned_cols=146 Identities=14% Similarity=0.180 Sum_probs=99.2
Q ss_pred CCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccc---cchhh-HhHHHHHHHhccc------CCCCCHHHHHHH
Q 006253 127 KQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDA---VEQDH-VNKILTAVVQGMN------ASESNNDVRLAA 196 (653)
Q Consensus 127 ~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~---~~~~~-~~~l~~~l~~~l~------~~~~~~~vr~~a 196 (653)
..|+=++|.++..++|.++.+|..|+.+|..+++...... +.+.. ..-+...+..++. ..+.+..+-..|
T Consensus 115 ~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~a 194 (282)
T PF10521_consen 115 QHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAA 194 (282)
T ss_pred HhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHH
Confidence 5899999999999999999999999999999999875444 31221 2222233333332 224566777888
Q ss_pred HHHHHHHHHhhhhhc--CChhHHH-HHHHHHHhhhc-CC---cHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHh
Q 006253 197 TRALYNALGFAQANF--SNDMERD-YIMRVVCEATL-SP---EVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAV 269 (653)
Q Consensus 197 ~~~l~~~~~~~~~~~--~~~~~~~-~il~~l~~~~~-~~---~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~ 269 (653)
..|+..++......- ....... .+-+.++..+. .. .+.++...++.+..++..-+-....|++.+++.+.+.+
T Consensus 195 y~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l 274 (282)
T PF10521_consen 195 YPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQIL 274 (282)
T ss_pred HHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHh
Confidence 899888876432111 1111112 23333433332 22 48889999999999999888888899999999999887
Q ss_pred hcC
Q 006253 270 RED 272 (653)
Q Consensus 270 ~~~ 272 (653)
++.
T Consensus 275 ~np 277 (282)
T PF10521_consen 275 ENP 277 (282)
T ss_pred cCC
Confidence 754
No 187
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=2.6 Score=44.70 Aligned_cols=84 Identities=18% Similarity=0.154 Sum_probs=56.6
Q ss_pred ccHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCC
Q 006253 343 WNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDP 422 (653)
Q Consensus 343 ~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~ 422 (653)
..+|..++-+|+-.+...|.. ..+.++..+.+|+.--+|++|+.+++-|.-.+ .+..-|.+..+-..+.+.+ .|.
T Consensus 603 ~HVRyGaA~ALGIaCAGtG~~---eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~-t~~~~pkv~~frk~l~kvI-~dK 677 (929)
T KOG2062|consen 603 PHVRYGAAMALGIACAGTGLK---EAINLLEPLTSDPVDFVRQGALIALAMIMIQQ-TEQLCPKVNGFRKQLEKVI-NDK 677 (929)
T ss_pred hhhhhhHHHHHhhhhcCCCcH---HHHHHHhhhhcChHHHHHHHHHHHHHHHHHhc-ccccCchHHHHHHHHHHHh-hhh
Confidence 368888999998777666643 33455556677887789999999999877654 3455555666666666666 665
Q ss_pred ch--HHHHHHH
Q 006253 423 NN--HVKDTTA 431 (653)
Q Consensus 423 ~~--~vr~~a~ 431 (653)
|. .++.-|+
T Consensus 678 hEd~~aK~GAi 688 (929)
T KOG2062|consen 678 HEDGMAKFGAI 688 (929)
T ss_pred hhHHHHHHHHH
Confidence 54 3444444
No 188
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=95.73 E-value=1.8 Score=43.41 Aligned_cols=123 Identities=12% Similarity=0.130 Sum_probs=84.9
Q ss_pred CCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhHh-HHHHHHHhcccCCCCCHHHHHHHHHHHHHHHH
Q 006253 127 KQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVN-KILTAVVQGMNASESNNDVRLAATRALYNALG 205 (653)
Q Consensus 127 ~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~ 205 (653)
-.|..+.+.+...+-+++..+|-+|++++..++... +.+ +.... ++--.+...+..+..+..-|.+|++.+..+++
T Consensus 21 ~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~--~~l-~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~ 97 (371)
T PF14664_consen 21 LVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDE--ESL-QILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLE 97 (371)
T ss_pred hhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCH--HHH-HHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHH
Confidence 368888888887666666999999999999887754 112 11111 11123344554434456679999999999988
Q ss_pred hhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhH
Q 006253 206 FAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLA 255 (653)
Q Consensus 206 ~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 255 (653)
+-.+. . .....++..+.....+++...|..+++.+++++-..|+.+.
T Consensus 98 ~~~~~-~--~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~ 144 (371)
T PF14664_consen 98 IKKGP-K--EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVA 144 (371)
T ss_pred hcCCc-c--cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHH
Confidence 63211 0 11246888888888888889999999999999998887653
No 189
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=95.70 E-value=2.7 Score=42.44 Aligned_cols=220 Identities=13% Similarity=0.102 Sum_probs=129.6
Q ss_pred ChhHHHHHHHHHhhhcchhhhhhHHHhhhhccCCChHHHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHHHhhhcCCCCC
Q 006253 52 PVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPA--HDARSTASQVVAKVAGIELPHKQW 129 (653)
Q Consensus 52 ~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~--~~vr~~~~~~l~~ia~~~~~~~~~ 129 (653)
+.++-..|..+|..++... ..-..++.+....+.+..+..+.+++ ..+.+..-. .+....++....
T Consensus 59 ~~~L~~qALkll~~~l~~~---------~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~---~ls~Q~f~~~~~ 126 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHP---------EIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLW---CLSDQKFSPKIM 126 (372)
T ss_pred chHHHHHHHHHHHHHHccH---------HHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHH---HHHcCCCCCccc
Confidence 4566677888888777532 12245888888888889999887764 344444433 344444442111
Q ss_pred -chHHHHHHHh---hcC--CChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHH
Q 006253 130 -PELIGALLSN---IHQ--LPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNA 203 (653)
Q Consensus 130 -~~l~~~l~~~---l~~--~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~ 203 (653)
.+....++.. +.+ ++..+....+.++..++..+ |+.+ ..+...=++.++..+- +....+|..|+.++...
T Consensus 127 ~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~-p~~M-~~~~~~W~~~l~~~l~--~~~k~ir~~a~~l~~~~ 202 (372)
T PF12231_consen 127 TSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLSQF-PQQM-IKHADIWFPILFPDLL--SSAKDIRTKAISLLLEA 202 (372)
T ss_pred chhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHh--hcchHHHHHHHHHHHHH
Confidence 2333333333 332 35567778899999999988 7777 5666656666666665 45667777776666554
Q ss_pred HHhhhh----------hc----CChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHh---hHHhHHHHHHHHH
Q 006253 204 LGFAQA----------NF----SNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEK---LAPYIQDIFNITA 266 (653)
Q Consensus 204 ~~~~~~----------~~----~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~---~~~~l~~l~~~~~ 266 (653)
...+.. .+ ....+.+.+.+.+...+.+.+ -...+.+.+..++...+.. -.+++.+.+...-
T Consensus 203 ~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~--~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e 280 (372)
T PF12231_consen 203 KKCLGPNKELSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKD--EYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPE 280 (372)
T ss_pred HHHhChhHHHHHHHHHHhccccccccHHHHHHHHHHHHHhCcC--CcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHH
Confidence 332211 00 001122334444444443311 1223444444444433321 2356677777777
Q ss_pred HHhhcCChhHHHHHHHhHHHhhH
Q 006253 267 KAVREDEEPVALQAIEFWSSVCD 289 (653)
Q Consensus 267 ~~~~~~~~~~~~~a~~~~~~~~~ 289 (653)
.++.+.|+.+|..|+..|..+..
T Consensus 281 ~cFn~~d~~~k~~A~~aW~~liy 303 (372)
T PF12231_consen 281 KCFNSSDPQVKIQAFKAWRRLIY 303 (372)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHH
Confidence 78889999999999999999986
No 190
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=95.70 E-value=0.84 Score=48.22 Aligned_cols=146 Identities=12% Similarity=0.229 Sum_probs=93.4
Q ss_pred chHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhh
Q 006253 130 PELIGALLSNIHQ-LPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQ 208 (653)
Q Consensus 130 ~~l~~~l~~~l~~-~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 208 (653)
+.++|.|.-.+.. .+.......++=+..|.+...++ +....++|++...++ +.+..++..+++.+..+.+.++
T Consensus 348 ~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e----~~~~~IlplL~~S~~--~~~~~iQ~~~L~~lptv~e~iD 421 (700)
T KOG2137|consen 348 PKMLPALKPIYSASDPKQALLFILENMDLLKEKTPPE----EVKEKILPLLYRSLE--DSDVQIQELALQILPTVAESID 421 (700)
T ss_pred hhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCChH----HHHHHHHHHHHHHhc--CcchhhHHHHHHhhhHHHHhcc
Confidence 5566666666553 23333333333344444444222 336789999999998 7888999999999998887664
Q ss_pred hhcCChhHHHHHHHHHHhhh-cCCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHh
Q 006253 209 ANFSNDMERDYIMRVVCEAT-LSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSV 287 (653)
Q Consensus 209 ~~~~~~~~~~~il~~l~~~~-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~ 287 (653)
-. ..+..++|.+..+. ...+..++.+++.|+..+++.... ..+-+.+..+.+.++..++.+....+.....+
T Consensus 422 ~~----~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~---~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l 494 (700)
T KOG2137|consen 422 VP----FVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDK---AAVLDELLPILKCIKTRDPAIVMGFLRIYEAL 494 (700)
T ss_pred HH----HHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 22 22356777776543 457889999999999999954432 22334455556677777888776666554443
Q ss_pred h
Q 006253 288 C 288 (653)
Q Consensus 288 ~ 288 (653)
.
T Consensus 495 ~ 495 (700)
T KOG2137|consen 495 A 495 (700)
T ss_pred H
Confidence 3
No 191
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=3.5 Score=43.77 Aligned_cols=107 Identities=18% Similarity=0.196 Sum_probs=72.6
Q ss_pred cHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCc
Q 006253 344 NIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPN 423 (653)
Q Consensus 344 ~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~ 423 (653)
.+|++|..+|+-+...-+ ..+|.++..+.+ +-|+.+|+++.++||-.+.|.+ ....+..+-... .|+.
T Consensus 570 DVrRaAVialGFVl~~dp-~~~~s~V~lLse---s~N~HVRyGaA~ALGIaCAGtG-------~~eAi~lLepl~-~D~~ 637 (929)
T KOG2062|consen 570 DVRRAAVIALGFVLFRDP-EQLPSTVSLLSE---SYNPHVRYGAAMALGIACAGTG-------LKEAINLLEPLT-SDPV 637 (929)
T ss_pred HHHHHHHHHheeeEecCh-hhchHHHHHHhh---hcChhhhhhHHHHHhhhhcCCC-------cHHHHHHHhhhh-cChH
Confidence 589999888876554333 334444444332 4578999999999998888765 223345555556 8999
Q ss_pred hHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc
Q 006253 424 NHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD 469 (653)
Q Consensus 424 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d 469 (653)
..||+.|+-+++-+.-...+ ...+-...+-..+.+.+.|
T Consensus 638 ~fVRQgAlIa~amIm~Q~t~-------~~~pkv~~frk~l~kvI~d 676 (929)
T KOG2062|consen 638 DFVRQGALIALAMIMIQQTE-------QLCPKVNGFRKQLEKVIND 676 (929)
T ss_pred HHHHHHHHHHHHHHHHhccc-------ccCchHHHHHHHHHHHhhh
Confidence 99999999998877765542 2345556666666666665
No 192
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=95.63 E-value=0.6 Score=43.49 Aligned_cols=110 Identities=13% Similarity=0.202 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccch-------hhHHHHHH
Q 006253 406 LVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDV-------PNVAEKAC 478 (653)
Q Consensus 406 ~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~-------~~v~~~a~ 478 (653)
|++.+++.+ + ...+...|.+|+.+|. ..+-+++++|.++..+.+. ..+-....
T Consensus 198 YF~kvisal---~-dEs~~~~r~aAl~sLr----------------~dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~ 257 (450)
T COG5095 198 YFDKVISAL---L-DESDEQTRDAALESLR----------------NDSGLHQLVPYFIHFFNEQITKNLKNLEKLTTVV 257 (450)
T ss_pred HHHHHHHHH---H-HHHHHHHHHHHHHHhc----------------cCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 444444443 3 4556788999887664 3456677777777766531 11111112
Q ss_pred HHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccc-----cccc--hhchHHHHHHHHHHHHHhcccc
Q 006253 479 GALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHR-----EDAG--ESRLRTAAYETLNEVVRCSTDE 541 (653)
Q Consensus 479 ~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~-----~~~~--~~~~~~~~~~~l~~l~~~~~~~ 541 (653)
.-...++++ ..-.+.||+.++||.++.++-. ...+ .-.+|..|...++.+.+..+..
T Consensus 258 ~m~~sLL~N------~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~ 321 (450)
T COG5095 258 MMYSSLLKN------KYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSS 321 (450)
T ss_pred HHHHHHhcC------CceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHh
Confidence 222233332 1345679999999999876632 1110 1236777777777777766643
No 193
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.63 E-value=6.1 Score=45.93 Aligned_cols=303 Identities=14% Similarity=0.136 Sum_probs=153.0
Q ss_pred CCChhHHHHHHHHHhhhcchhhhhhHHHhhhhccCCChHHHHHHHHHHHH---hcCCCChHHHHHHHHHHHHHHhhh---
Q 006253 50 EKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILK---TLSSPAHDARSTASQVVAKVAGIE--- 123 (653)
Q Consensus 50 ~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~---~l~~~~~~vr~~~~~~l~~ia~~~--- 123 (653)
+.+..+|.+.+.++...++-.-. . ...+.++...|-..++. +|++....--..-..++-+++.+.
T Consensus 61 h~d~dvrllvacCvseilRi~aP--------e-aPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l 131 (1266)
T KOG1525|consen 61 HKDKDVRLLVACCVSEILRIYAP--------E-APYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCL 131 (1266)
T ss_pred CCCcChhHHHHHHHHHHHHHhCC--------C-CCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHh
Confidence 56899999999988887753210 0 11333344555555544 455543221122223333333322
Q ss_pred -cCCCCCchHHHHHHHhh----cCCChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHH
Q 006253 124 -LPHKQWPELIGALLSNI----HQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATR 198 (653)
Q Consensus 124 -~~~~~~~~l~~~l~~~l----~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~ 198 (653)
.-.....+++..++..+ ..+-+.....-+.++..+..+. +....+.+.-++..++..-. +...+-+..|-.
T Consensus 132 ~~~l~d~~e~~~~~f~~f~d~~~~~~~~~v~~~~~i~~~li~e~--d~v~~e~L~~ll~~lv~~~~--~~~~~a~~la~~ 207 (1266)
T KOG1525|consen 132 LMLLEDCQELVHELFRTFFDLARKGHPKKVFNMLDIAIMLITEE--DTVQSELLDVLLENLVKPGR--DTIKEADKLASD 207 (1266)
T ss_pred eeeccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHhccCCC--CccHHHHHHHHH
Confidence 11124455555555554 3444444444455555555443 11212223333333333322 455555666666
Q ss_pred HHHHHHHhhhh--------hc-------CC--hhHH--------------HHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q 006253 199 ALYNALGFAQA--------NF-------SN--DMER--------------DYIMRVVCEATLSPEVKIRQAAFECLVAIS 247 (653)
Q Consensus 199 ~l~~~~~~~~~--------~~-------~~--~~~~--------------~~il~~l~~~~~~~~~~~~~~~~~~l~~l~ 247 (653)
++..+...... .+ .. ..+. ..++|.|..-+..++.++|..+...++.+.
T Consensus 208 li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~ 287 (1266)
T KOG1525|consen 208 LIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMF 287 (1266)
T ss_pred HHHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 66555432111 00 00 0000 013334433445678899999999999999
Q ss_pred HHhHHhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHH
Q 006253 248 STYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLE 327 (653)
Q Consensus 248 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 327 (653)
......+..-.+.+....+..+.|...++|..+++....+.-..+++ .+. .. ...
T Consensus 288 ~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~-------------------~~~----~~--~~~ 342 (1266)
T KOG1525|consen 288 SDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSI-------------------AKA----ST--ILL 342 (1266)
T ss_pred hcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchh-------------------hhH----HH--HHH
Confidence 98877666555666666777888899999999888766554321110 110 00 111
Q ss_pred HhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhc
Q 006253 328 TLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILE 396 (653)
Q Consensus 328 ~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~ 396 (653)
.++..+-|++ + ++|....-....+.. +.-.+.+.++.++.+.+.|..|++|.-|+..+..+..
T Consensus 343 ~l~~~~~D~~--~---rir~~v~i~~~~v~~-~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 343 ALRERDLDED--V---RVRTQVVIVACDVMK-FKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYK 405 (1266)
T ss_pred HHHhhcCChh--h---hheeeEEEEEeehhH-hhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 1222222221 1 122100000000000 0012234478888889999999999999998887665
No 194
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=3.9 Score=43.54 Aligned_cols=389 Identities=13% Similarity=0.104 Sum_probs=202.4
Q ss_pred hhccCCChHHHHHHHHHHHHhcCC-----------CChHHHH-------------HHHHHHHHHHhhhcCCCCCchHHHH
Q 006253 80 QRWLSLDSSVKAQIKSFILKTLSS-----------PAHDARS-------------TASQVVAKVAGIELPHKQWPELIGA 135 (653)
Q Consensus 80 ~~~~~l~~~~~~~i~~~ll~~l~~-----------~~~~vr~-------------~~~~~l~~ia~~~~~~~~~~~l~~~ 135 (653)
..|..+.|-.+-.+...++.+++- +++.+|+ +++.++..++.+. ++..++.+++.
T Consensus 334 ~tw~l~ePhlq~ii~~vIfPllc~see~eElfEnDp~eyirry~df~d~g~spdlaal~fl~~~~sKr-ke~TfqgiLsf 412 (970)
T COG5656 334 QTWRLMEPHLQYIISGVIFPLLCLSEEEEELFENDPDEYIRRYYDFFDNGLSPDLAALFFLIISKSKR-KEETFQGILSF 412 (970)
T ss_pred hhHhhhccHHHHHHHhhhhhhcCCChhhHHHHhcCHHHHHHHhcchhcCCCChhHHHHHHHHHHhccc-chhhhhhHHHH
Confidence 367777776666666777776641 2234443 3344444444444 43467888999
Q ss_pred HHHhhc-C-------CChhHHHHHHHHHHHHHhhhc-ccccchhhHh-HHHHHHHhcccCCCCCHHHHHHHHHHHHHHHH
Q 006253 136 LLSNIH-Q-------LPPHTKQATLETLGYICEEVS-SDAVEQDHVN-KILTAVVQGMNASESNNDVRLAATRALYNALG 205 (653)
Q Consensus 136 l~~~l~-~-------~~~~~~~~~l~~l~~l~~~~~-~~~~~~~~~~-~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~ 205 (653)
+...++ + +++...++|++.+..+..... +..+ ...+. -+++.+...++ ++.--+|..|+..++.+
T Consensus 413 ~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~-an~me~fiv~hv~P~f~--s~ygfL~Srace~is~~-- 487 (970)
T COG5656 413 LLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPA-ANVMEYFIVNHVIPAFR--SNYGFLKSRACEFISTI-- 487 (970)
T ss_pred HHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchH-HHHHHHHHHHHhhHhhc--CcccchHHHHHHHHHHH--
Confidence 888883 2 134567889999988877432 1112 22222 24555556666 56667788899988875
Q ss_pred hhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHh--HHhhHHhHHHHHHHHHHHhhcCChhHHHHHHHh
Q 006253 206 FAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTY--YEKLAPYIQDIFNITAKAVREDEEPVALQAIEF 283 (653)
Q Consensus 206 ~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~ 283 (653)
+..+..........+.....+++++-.++..+.-++.-++.+. ...+..|++..++-++..-+.-+.++-..+++-
T Consensus 488 --eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~vMe~ 565 (970)
T COG5656 488 --EEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMVMES 565 (970)
T ss_pred --HHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHHHHH
Confidence 3334332222344555566666677777777777776666554 244666777777777766655555555555533
Q ss_pred H-HHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhc-cCCccCCCccccHhhhHHHHHHHHHhhc-
Q 006253 284 W-SSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQ-EEDQDQDEGAWNIAMAGGTCLGLVARTV- 360 (653)
Q Consensus 284 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~-~ed~~~d~~~~~~r~~a~~~L~~l~~~~- 360 (653)
+ ..+++. ...|...+...++...++.+... ++.+|-+...-.-..+|.-.|.++.+..
T Consensus 566 fVe~fseE-------------------Lspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiL 626 (970)
T COG5656 566 FVEYFSEE-------------------LSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMIL 626 (970)
T ss_pred HHHHhHHh-------------------hchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHH
Confidence 2 223321 11334444444444333322211 1111100000122344555555554432
Q ss_pred CCCchhchH--------HHHHhhhcCcchhhHHHHHHHHHHhhcCCC--CCcchHHHHHHHHHHHHHhcCCCch-HHHHH
Q 006253 361 GDDIVPLVM--------PFVEENITKQEWRQREAATYAFGSILEGPS--PEKLVPLVNIALNFMLTALMQDPNN-HVKDT 429 (653)
Q Consensus 361 ~~~~~~~l~--------~~l~~~l~~~~~~~r~aal~~l~~i~~~~~--~~~~~~~l~~l~~~ll~~l~~d~~~-~vr~~ 429 (653)
.=+-.|.++ |.+.-.+.+.- ..-+.-...+.+++. ...+.+....++..+...+ .++.. .--..
T Consensus 627 Slen~p~vLk~le~slypvi~Filkn~i----~dfy~Ea~dildg~tf~skeI~pimwgi~Ell~~~l-~~~~t~~y~ee 701 (970)
T COG5656 627 SLENRPLVLKYLEVSLYPVISFILKNEI----SDFYQEALDILDGYTFMSKEIEPIMWGIFELLLNLL-IDEITAVYSEE 701 (970)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHhhhH----HHHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHHhcc-cccchhhhHHH
Confidence 111112222 22221222211 111111223444431 2334566667777777777 66553 34456
Q ss_pred HHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc--h-hhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHH
Q 006253 430 TAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD--V-PNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIV 506 (653)
Q Consensus 430 a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d--~-~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~ 506 (653)
+..++.++...-..+- .....|...+..+....+.+ + ..=+..+|..+..++-++++ +.+..|+|-+.
T Consensus 702 ~~~al~nfityG~~ef----~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd-----~Ll~qy~plfi 772 (970)
T COG5656 702 VADALDNFITYGKTEF----MDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRD-----ELLSQYLPLFI 772 (970)
T ss_pred HHHHHHHHHHhCcccc----ccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccc-----hhHHhhhHHHH
Confidence 6778888877553221 13456777777777777764 2 23356788888888877653 34455666444
Q ss_pred HHH
Q 006253 507 QAL 509 (653)
Q Consensus 507 ~~L 509 (653)
...
T Consensus 773 ~va 775 (970)
T COG5656 773 SVA 775 (970)
T ss_pred HHH
Confidence 433
No 195
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.58 E-value=0.15 Score=53.07 Aligned_cols=149 Identities=15% Similarity=0.190 Sum_probs=103.7
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCC--------CchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhccc
Q 006253 94 KSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQ--------WPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSD 165 (653)
Q Consensus 94 ~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~--------~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~ 165 (653)
...|..+|..++..||..|+..+..+.-...|. . ..+=+..+...+.|+-|.+|-.|...+..+...+ =.
T Consensus 176 ~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd-~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~f-We 253 (1005)
T KOG1949|consen 176 KPILWRGLKARNSEVRSNAALLFVEAFPIRDPD-LHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKF-WE 253 (1005)
T ss_pred hHHHHHhhccCchhhhhhHHHHHHHhccCCCCC-ccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH-HH
Confidence 345566788899999999999998887655452 2 1233455667788888999988776666555443 23
Q ss_pred ccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHH
Q 006253 166 AVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVA 245 (653)
Q Consensus 166 ~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~ 245 (653)
.+....+.+++..+...+.. |+..+||.+.++++.-++. +.........++|.+-..+.|.++.+|.+.++.+..
T Consensus 254 ~iP~~i~~~ll~kI~d~~a~-dt~s~VR~svf~gl~~~l~----np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ 328 (1005)
T KOG1949|consen 254 MIPPTILIDLLKKITDELAF-DTSSDVRCSVFKGLPMILD----NPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLK 328 (1005)
T ss_pred HcCHHHHHHHHHHHHHHhhh-ccchheehhHhcCcHHHHc----CccchhHHHHHHHhcchhhhccchhHHHHHHHHHHH
Confidence 34334567788888877765 6777999999998876543 111112235677777778888999999999988877
Q ss_pred HHHH
Q 006253 246 ISST 249 (653)
Q Consensus 246 l~~~ 249 (653)
+=..
T Consensus 329 ik~v 332 (1005)
T KOG1949|consen 329 IKAV 332 (1005)
T ss_pred HHhh
Confidence 6544
No 196
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.56 E-value=3.4 Score=42.51 Aligned_cols=322 Identities=13% Similarity=0.091 Sum_probs=168.6
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhc-cc---ccchhh---HhHHHHHHHhcccCCCCCHHHHHHHHHHHHHH
Q 006253 131 ELIGALLSNIHQLPPHTKQATLETLGYICEEVS-SD---AVEQDH---VNKILTAVVQGMNASESNNDVRLAATRALYNA 203 (653)
Q Consensus 131 ~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~-~~---~~~~~~---~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~ 203 (653)
.++..++..++ +...-+.|..|+..+..... .+ .+ ..+ ...+++...+.... ..+.+-+.+..+.+..+
T Consensus 199 pLi~l~F~sl~--~~~lhe~At~cic~ll~~~~~~~~~~~~-~~~l~~~v~~L~~~~~~a~~-~~d~d~~~a~~RIFtel 274 (559)
T KOG2081|consen 199 PLITLAFRSLS--DDELHEEATECICALLYCSLDRSEGLPL-AAILFIGVIILETAFHLAMA-GEDLDKNEAICRIFTEL 274 (559)
T ss_pred HHHHHHHHHcc--cchhhHHHHHHHHHHHHHhhhhhccCch-hHHHhccccccchHHHHhhc-ccCHHHHHHHHHHHHHH
Confidence 34455555555 33455667777777666541 11 01 111 12233333333322 34555555556666655
Q ss_pred HHhhh-hhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhH--------HhhHHhHHHHHHHHHHHhhcCC-
Q 006253 204 LGFAQ-ANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYY--------EKLAPYIQDIFNITAKAVREDE- 273 (653)
Q Consensus 204 ~~~~~-~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~--------~~~~~~l~~l~~~~~~~~~~~~- 273 (653)
.+... ....+....-.++..++....+++.++.+..+..+..+-+... ..+.||...++..+..-.+-+.
T Consensus 275 ~eaf~~~i~~np~~~l~~vellLl~~~h~~~evie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~ 354 (559)
T KOG2081|consen 275 GEAFVVLISTNPEEFLRIVELLLLVAGHNDTEVIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPD 354 (559)
T ss_pred HHHHHHHHhhCCCcchhHHHHHHHhccCCchhhhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCc
Confidence 54221 1111111112344445555567888999999988888776432 2456888888888777655322
Q ss_pred --------h---hHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCcc
Q 006253 274 --------E---PVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGA 342 (653)
Q Consensus 274 --------~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~ 342 (653)
. +.|....+.+..++-- +.. ...+..+...+. + ....
T Consensus 355 ~~~l~Ee~~~f~~fR~~v~dvl~Dv~~i-----------------------igs--~e~lk~~~~~l~---e----~~~~ 402 (559)
T KOG2081|consen 355 QFDLPEEESEFFEFRLKVGDVLKDVAFI-----------------------IGS--DECLKQMYIRLK---E----NNAS 402 (559)
T ss_pred cccCccchhHHHHHHHHHHHHHHHHHHH-----------------------hCc--HHHHHHHHHHHc---c----CCCc
Confidence 1 1222222222222110 000 001111222222 1 1245
Q ss_pred ccHhhhHHHHHHHHHhhcC---CCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhc
Q 006253 343 WNIAMAGGTCLGLVARTVG---DDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALM 419 (653)
Q Consensus 343 ~~~r~~a~~~L~~l~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~ 419 (653)
|..-.++...+..++.... ..++|.+++.+.+.-.. ...|++++..+|.+.+-.. .-...+.-+...+...+
T Consensus 403 We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~nlp~Q--~~~~~ts~ll~g~~~ew~~--~~p~~le~v~~~~~~~~- 477 (559)
T KOG2081|consen 403 WEEVEAALFILRAVAKNVSPEENTIMPEVLKLICNLPEQ--APLRYTSILLLGEYSEWVE--QHPELLEPVLRYIRQGL- 477 (559)
T ss_pred hHHHHHHHHHHHHHhccCCccccchHHHHHHHHhCCccc--hhHHHHHHHHHHHHHHHHH--hCcHHHHHHHHHHHHHh-
Confidence 9999999999999998774 46788888877655322 3489999999999876431 11223444556666666
Q ss_pred CCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhcc--chhhHHHHHHHHHHHHHhcccCCCCCCCC
Q 006253 420 QDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMK--DVPNVAEKACGALYFLAQGFEDAISPSSP 497 (653)
Q Consensus 420 ~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~--d~~~v~~~a~~al~~~~~~~~~~~~~~~~ 497 (653)
.+.. ...++..+...++..+.. .....++.++..+..... -+..... .+..++.++.++. ...
T Consensus 478 ~~~~--~as~~a~~~~~i~~~c~~-------~~~~l~~~~~~l~~~l~~~~~~~e~a~-l~~~~s~i~~~lp-----~~k 542 (559)
T KOG2081|consen 478 QLKR--LASAAALAFHRICSACRV-------QMTCLIPSLLELIRSLDSTQINEEAAC-LLQGISLIISNLP-----AHK 542 (559)
T ss_pred hhcc--hhHHHHHHHHHHHHHHHH-------HhhhhhHHHHHHHHHHHHHhccHHHHH-HHHHHHHHHhcCC-----Hhh
Confidence 4433 666777778888877653 133344444333332221 1333333 5666666666643 344
Q ss_pred CchhHHHHHHH
Q 006253 498 LTPFFQEIVQA 508 (653)
Q Consensus 498 l~~~l~~i~~~ 508 (653)
..+.++.++..
T Consensus 543 ~~~~~~el~~~ 553 (559)
T KOG2081|consen 543 AKIALEELCEP 553 (559)
T ss_pred hhHHHHHHhhH
Confidence 55555555443
No 197
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=95.55 E-value=0.3 Score=45.41 Aligned_cols=86 Identities=14% Similarity=0.184 Sum_probs=56.8
Q ss_pred hHHHhhhhhhHHHHHHHhhhcc--CCccCCCccccHhhhHHHHHHHHHhhcCCC---chhchHHHHHhhhcCc--chhhH
Q 006253 312 YFIKHALPVLVPLLLETLLKQE--EDQDQDEGAWNIAMAGGTCLGLVARTVGDD---IVPLVMPFVEENITKQ--EWRQR 384 (653)
Q Consensus 312 ~~~~~~l~~l~~~l~~~l~~~~--ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~---~~~~l~~~l~~~l~~~--~~~~r 384 (653)
-|+.|++.+++|.++.++.... .++ +|.+.+.+|..|+..++.+...++.. .-|.+...+....-|. .....
T Consensus 269 iFvdPY~hqlmPSilTcliakklg~~p-~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~ 347 (450)
T COG5095 269 IFVDPYLHQLMPSILTCLIAKKLGNVP-DDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQ 347 (450)
T ss_pred eeecHHHHHHHHHHHHHHHHHHhcCCC-cchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchh
Confidence 4677888888887777654311 222 22456789999999999999988753 3455555544443333 25667
Q ss_pred HHHHHHHHHhhcCC
Q 006253 385 EAATYAFGSILEGP 398 (653)
Q Consensus 385 ~aal~~l~~i~~~~ 398 (653)
++|+.+++.+....
T Consensus 348 YGalkgls~l~ke~ 361 (450)
T COG5095 348 YGALKGLSILSKEV 361 (450)
T ss_pred hhhhhhhhhhchhh
Confidence 88999998777543
No 198
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.43 E-value=0.094 Score=51.65 Aligned_cols=207 Identities=11% Similarity=0.095 Sum_probs=103.5
Q ss_pred CcchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHH
Q 006253 34 NLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTAS 113 (653)
Q Consensus 34 ~~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~ 113 (653)
+.+.+...++.++..-+..+++.+....++...+..... ..+ .+..+........-..+++.+.+++..+...++
T Consensus 52 ~~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~-~~~----~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~ 126 (312)
T PF03224_consen 52 DGDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPS-RVE----LFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAA 126 (312)
T ss_dssp ----------HHHHHH---HHHHHHHHHHHHHHHH-SSS-SHH----HHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHH
T ss_pred chhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHH-HHH----HHHHhcccccchhHHHHHHHhcCCCHHHHHHHH
Confidence 344555555566654335789999999999887765431 111 111111111112456778888889999999999
Q ss_pred HHHHHHHhhhcCCCCCc---hHHHHHHHhhcC----CChhHHHHHHHHHHHHHhhhc--ccccchhhHhHHHHHHHhcc-
Q 006253 114 QVVAKVAGIELPHKQWP---ELIGALLSNIHQ----LPPHTKQATLETLGYICEEVS--SDAVEQDHVNKILTAVVQGM- 183 (653)
Q Consensus 114 ~~l~~ia~~~~~~~~~~---~l~~~l~~~l~~----~~~~~~~~~l~~l~~l~~~~~--~~~~~~~~~~~l~~~l~~~l- 183 (653)
.+++.++..... ..-. +.++.+++.+.+ ++...+..++.+|..++..-. ..+.. ...++.+...+
T Consensus 127 ~iLt~Ll~~~~~-~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~----~~~v~~l~~iL~ 201 (312)
T PF03224_consen 127 FILTSLLSQGPK-RSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK----SNGVSPLFDILR 201 (312)
T ss_dssp HHHHHHHTSTTT---HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT----HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCc-cccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh----cCcHHHHHHHHH
Confidence 999999987633 2333 567777777664 345566889999999876421 11111 33444444444
Q ss_pred ----cCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcC-CcHHHHHHHHHHHHHHHHHhHH
Q 006253 184 ----NASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLS-PEVKIRQAAFECLVAISSTYYE 252 (653)
Q Consensus 184 ----~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~l~~l~~~~~~ 252 (653)
.+...+..+...++-|+-.+ .|-++... ......+++.+...++. ..+++-+-++.+|..++....+
T Consensus 202 ~~~~~~~~~~~Ql~Y~~ll~lWlL-SF~~~~~~-~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~ 273 (312)
T PF03224_consen 202 KQATNSNSSGIQLQYQALLCLWLL-SFEPEIAE-ELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPK 273 (312)
T ss_dssp ---------HHHHHHHHHHHHHHH-TTSHHHHH-HHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSST
T ss_pred hhcccCCCCchhHHHHHHHHHHHH-hcCHHHHH-HHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHH
Confidence 21134455666666665432 12111100 01112266777666643 4667777777777777766554
No 199
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.29 E-value=4 Score=42.14 Aligned_cols=114 Identities=10% Similarity=0.089 Sum_probs=72.5
Q ss_pred HhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhh-hhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHh
Q 006253 172 VNKILTAVVQGMNASESNNDVRLAATRALYNALGFA-QANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTY 250 (653)
Q Consensus 172 ~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~-~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~ 250 (653)
+..++..++.+=++ +.+-...++.+..++.|- ++..+.......++.+++..+..++..+|..+++.+..+....
T Consensus 47 flr~vn~IL~~Kk~----~si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v 122 (885)
T COG5218 47 FLRVVNTILACKKN----PSIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVV 122 (885)
T ss_pred HHHHHHHhhccccC----CCcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhc
Confidence 44555555544332 222233566666666653 2222323345678888888888899999999999998887755
Q ss_pred HHhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhH
Q 006253 251 YEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCD 289 (653)
Q Consensus 251 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 289 (653)
.+.=......++.-+.+.+-|.++.+|..|+..+..+.+
T Consensus 123 ~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe 161 (885)
T COG5218 123 REIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQE 161 (885)
T ss_pred chHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHh
Confidence 432122223455555556667888999999988877764
No 200
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.24 E-value=13 Score=47.27 Aligned_cols=295 Identities=12% Similarity=0.136 Sum_probs=148.0
Q ss_pred hHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhh----cCC-------CchhchHHHHHhhhcCcchhhHHHHHH
Q 006253 321 LVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVART----VGD-------DIVPLVMPFVEENITKQEWRQREAATY 389 (653)
Q Consensus 321 l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~----~~~-------~~~~~l~~~l~~~l~~~~~~~r~aal~ 389 (653)
+++.+...+++.+ -..+.++..++..+... +|. .+++.+++.+...--++.|..|.+++.
T Consensus 985 ~ldal~~~l~~~~---------~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~ 1055 (3550)
T KOG0889|consen 985 FLDALVESLSHEN---------SEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVN 1055 (3550)
T ss_pred HHHHHHHHHhccc---------hhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCc
Confidence 4566777776311 24567777777766543 242 334556666666667888999999999
Q ss_pred HHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHH----HHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHH
Q 006253 390 AFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKD----TTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQ 465 (653)
Q Consensus 390 ~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~----~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~ 465 (653)
.++.+.+......+-.+...++..+.-.+ .|....+-. .+-.++..+...+...+.. +.........++..+..
T Consensus 1056 gI~~l~~~~~~~~l~d~~~d~~~~l~fvl-~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~-~~~~~~~~~~~~~~lv~ 1133 (3550)
T KOG0889|consen 1056 GIKCLIESMPSLWLLDFQVDILKALFFVL-KDTESEVSSLPLDEAKDILMDILRVIFIDELA-EEERAKSAMNVFSPLVL 1133 (3550)
T ss_pred eeeeehhhchHHHHHHHHHHHhhhHHHhh-cCCccccccchHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHH
Confidence 99998887532223333445555555555 443222211 2223333333222211100 11123455666777777
Q ss_pred hccc-hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHH-HHhccccc-cchhchHHHHHHHHHHHHHhcccc-
Q 006253 466 SMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQAL-LTVTHRED-AGESRLRTAAYETLNEVVRCSTDE- 541 (653)
Q Consensus 466 ~l~d-~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L-~~~l~~~~-~~~~~~~~~~~~~l~~l~~~~~~~- 541 (653)
.+.+ |..||..+-.++..+.+..+. .+...+..+-+.+ ......+- ......+...++++...+...+.-
T Consensus 1134 eL~npN~~VR~~~~~~L~~i~~~s~~------~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~l~p~~f 1207 (3550)
T KOG0889|consen 1134 ELFNPNSDVREFSQKLLRLISELSGK------SVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLSLGPCLF 1207 (3550)
T ss_pred HHcCCchHHHHHHHHHHHHHHHHcCC------cHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHHcCCccc
Confidence 6665 789999999999998876432 2222222222222 11111110 002344445566666666555532
Q ss_pred -cHHHHHHHHHHHHHHHHHHHH---hhcCChhHHH--hHHHHHHHHHhHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHH
Q 006253 542 -TAPMVMQLVPLIMMELHQTLE---AQKLSSDERE--KQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLR 615 (653)
Q Consensus 542 -~~~~~~~l~~~l~~~l~~~~~---~~~~~~~~~~--~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~l~~ 615 (653)
+.+-+..+.-.+.......-. ....+.+.+. ....+|..+++.+ +..+-..+.......+|-+.++..+.+
T Consensus 1208 ~~~~~l~~l~~~~~~La~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll---~~~~~~~d~~~~~~~~~r~kii~v~fk 1284 (3550)
T KOG0889|consen 1208 DFTEELYRLKRFLIALADAEEDELATIQKTSDYKNSSSLVRLRVACIKLL---AACMKLSDFRTPQHAELREKIIAVFFK 1284 (3550)
T ss_pred CchHHHHHHHHHHHHhhhhhhhhhhhhhcccccccccccccchhHHHHHH---HHHHhcccccchhhhhhhhHHHHHHHH
Confidence 222111111111111111000 0000011111 0112344344444 443333322233377899999999999
Q ss_pred HHhccCcchhhhHHHHHHHH
Q 006253 616 VFAIRSATAHEEAMLAIGAL 635 (653)
Q Consensus 616 ~l~~~~~~~~e~~~~~~~~l 635 (653)
.+..+..++.+.+..++-..
T Consensus 1285 ~l~~~~~Ei~~~~~~~l~~v 1304 (3550)
T KOG0889|consen 1285 SLYKRSSELIEVALEGLRKV 1304 (3550)
T ss_pred HHcCChHHHHHHHHHHHHhh
Confidence 99998888877766655443
No 201
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=95.24 E-value=3.3 Score=40.46 Aligned_cols=237 Identities=10% Similarity=0.120 Sum_probs=120.2
Q ss_pred CChhHHHHHHHHHhhhcchhhhhhHHHhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCc
Q 006253 51 KPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWP 130 (653)
Q Consensus 51 ~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~ 130 (653)
.....+++|+.++.++++ +|..+..+..+ .-+.+..+++-.||++|..-+-.++..+ ..+
T Consensus 36 ~~~k~k~lasq~ip~~fk------------~fp~la~~a~d----a~~d~~ed~d~~ir~qaik~lp~fc~~d----~~~ 95 (460)
T KOG2213|consen 36 GTSKEKRLASQFIPRFFK------------HFPSLADEAID----AQLDLCEDDDVGIRRQAIKGLPLFCKGD----ALS 95 (460)
T ss_pred cchHHHHHHHHHHHHHHh------------hCchhhhHHHH----hhhccccccchhhHHHHHhccchhccCc----hhh
Confidence 356778889999888775 45555554433 3345566777899999999999888764 333
Q ss_pred hHHHHHHHhhcC------------CChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHH
Q 006253 131 ELIGALLSNIHQ------------LPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATR 198 (653)
Q Consensus 131 ~l~~~l~~~l~~------------~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~ 198 (653)
-+.+.|.+++.. .+..+|+.++..+..=+-.+.++.+.++.=..++..+...+. |-.-+--..-++
T Consensus 96 rv~d~l~qLLnk~sl~~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~--dVtgeef~lfm~ 173 (460)
T KOG2213|consen 96 RVNDVLVQLLNKASLTGLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALE--DVTGEEFTLFMD 173 (460)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHH--hccHHHHHHHHH
Confidence 344444444321 256677777766664333333455533333445555666665 333331222222
Q ss_pred HHHHHHHhhhhhcCChhHHHHH---HHHHHhh--hcCCcHHHHHHHHHHHHHHHHHhH-----HhhHHhHH-HHHHHHHH
Q 006253 199 ALYNALGFAQANFSNDMERDYI---MRVVCEA--TLSPEVKIRQAAFECLVAISSTYY-----EKLAPYIQ-DIFNITAK 267 (653)
Q Consensus 199 ~l~~~~~~~~~~~~~~~~~~~i---l~~l~~~--~~~~~~~~~~~~~~~l~~l~~~~~-----~~~~~~l~-~l~~~~~~ 267 (653)
.|.++-.+. . .........+ ...+-.. ....|.+.....+.|+..-+-.+. ..+-.|+. .++|...
T Consensus 174 ~L~~lk~~~-~-k~~~a~lqeLa~~~e~~a~ldaf~~sD~d~VdRfisCl~~AvPfFargapSskf~~y~n~~~ip~~f- 250 (460)
T KOG2213|consen 174 ILASLKSLQ-T-KAGEARLQELAEEQEGLADLDAFNVSDADYVDRFISCLLMAVPFFARGAPSSKFVEYLNKHIIPHHF- 250 (460)
T ss_pred HHHhhhccc-C-CCCHHHHHHHHHHHhhhhccCcccCCChHHHHHHHHHHHHhhhhhhcCCchhHHHHHHHhhhccccc-
Confidence 222221111 0 0111111112 2222111 334566766677777765443321 22333442 4555411
Q ss_pred HhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhc
Q 006253 268 AVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQ 332 (653)
Q Consensus 268 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~ 332 (653)
....++.+ ++++..+++-.+. ...+-.+..++.|+..|...|...
T Consensus 251 --dkl~e~rk---L~lLK~lAEMss~---------------ttaq~a~q~Lpsi~elLk~yMpa~ 295 (460)
T KOG2213|consen 251 --DKLTEERK---LDLLKALAEMSSY---------------TTAQAARQMLPSIVELLKEYMPAP 295 (460)
T ss_pred --ccchHHHH---HHHHHHHHHhCcc---------------chHHHHHHHHHHHHHHHHHhcccC
Confidence 11112333 4555666652111 122456777888888888888754
No 202
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=95.17 E-value=0.14 Score=40.59 Aligned_cols=94 Identities=16% Similarity=0.258 Sum_probs=68.0
Q ss_pred ccchHHHHHHHHHhccc-h--hh--HHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccchhchHHHH
Q 006253 453 QGNCQQIISVLLQSMKD-V--PN--VAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAA 527 (653)
Q Consensus 453 ~~~~~~il~~l~~~l~d-~--~~--v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~ 527 (653)
.+++=.++..+...+.| + +. -+.++..++..+++..+ ..+..+.++|+..|...++. +++|..+
T Consensus 6 ~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g------~~i~~a~pQI~acL~saL~~-----~eL~~~a 74 (107)
T smart00802 6 KDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMG------KHISSALPQIMACLQSALEI-----PELRSLA 74 (107)
T ss_pred HHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhCc-----hhHHHHH
Confidence 34555566666666665 2 23 37889999999999654 45888888888888888864 3589999
Q ss_pred HHHHHHHHHhcccc-cHHHHHHHHHHHHHHH
Q 006253 528 YETLNEVVRCSTDE-TAPMVMQLVPLIMMEL 557 (653)
Q Consensus 528 ~~~l~~l~~~~~~~-~~~~~~~l~~~l~~~l 557 (653)
++|...++..+.++ ..|.++.++-.++..|
T Consensus 75 l~~W~~~i~~L~~~~l~~ll~~~~~~i~~~~ 105 (107)
T smart00802 75 LRCWHVLIKTLKEEELGPLLDQIFAAILPLW 105 (107)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Confidence 99999999999863 5566666555555544
No 203
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=95.13 E-value=2.5 Score=44.68 Aligned_cols=212 Identities=11% Similarity=0.135 Sum_probs=125.8
Q ss_pred CCChhHHHHHHHHHhhhcchhhhhhHHHhhhhccCCChHHHHHHHHHHHHhcC--C---------CChHHHHHHHHHHHH
Q 006253 50 EKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLS--S---------PAHDARSTASQVVAK 118 (653)
Q Consensus 50 ~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~--~---------~~~~vr~~~~~~l~~ 118 (653)
+....+--.|-.+||+.-.. |. + ..+.+.|+.... . .++.+|..+-..+.+
T Consensus 248 d~~~~V~~~ae~~LKr~~~~------------~e--d----~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~k 309 (501)
T PF13001_consen 248 DSNSSVSDRAEDLLKRLSVS------------LE--D----PDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSK 309 (501)
T ss_pred CCcchHHHHHHHHHhhcCCC------------CC--C----HHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHH
Confidence 44566777777788774431 22 1 224444555433 1 135667666665554
Q ss_pred HHhhhcCCCCCchHHHHHHHhhcCC--ChhHHHHHHHHH---HHHHhhhcccccchhhHhHHHHHHHhccc------CCC
Q 006253 119 VAGIELPHKQWPELIGALLSNIHQL--PPHTKQATLETL---GYICEEVSSDAVEQDHVNKILTAVVQGMN------ASE 187 (653)
Q Consensus 119 ia~~~~~~~~~~~l~~~l~~~l~~~--~~~~~~~~l~~l---~~l~~~~~~~~~~~~~~~~l~~~l~~~l~------~~~ 187 (653)
=.... ...|+.+..+...+.+. +...|..+++.+ ...+..+.+..+ ......+..-+...+. +..
T Consensus 310 S~~Aa---~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l-~~l~~~i~~~g~p~~~~~~~~~~~~ 385 (501)
T PF13001_consen 310 SVIAA---TSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQIL-KLLRPVILSQGWPLIQDSSSQSNSS 385 (501)
T ss_pred hHHHH---hCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHH-HHHHHHHHhcCccccccccccCCCc
Confidence 32211 35678888899888877 667788888888 777776644333 2222333333333331 123
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhH-H--hHHHHHHH
Q 006253 188 SNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLA-P--YIQDIFNI 264 (653)
Q Consensus 188 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~--~l~~l~~~ 264 (653)
.+...|..+-++++.+..-.+..+..+ -.++..++..+.++.++++.++-++|..++..+...-. + ........
T Consensus 386 ~~~~lR~~aYe~lG~L~~~~p~l~~~d---~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~ 462 (501)
T PF13001_consen 386 EDIELRSLAYETLGLLAKRAPSLFSKD---LSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLEL 462 (501)
T ss_pred ccHHHHHHHHHHHHHHHccCccccccc---HHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHH
Confidence 577899999999999887666555322 35667777777788999999999999999988765333 1 11122222
Q ss_pred HH-HHhhcCChhHHHHHHHhHHH
Q 006253 265 TA-KAVREDEEPVALQAIEFWSS 286 (653)
Q Consensus 265 ~~-~~~~~~~~~~~~~a~~~~~~ 286 (653)
++ ....+.....|..|+.+..+
T Consensus 463 l~~~~~~~~~~~~R~~avk~an~ 485 (501)
T PF13001_consen 463 LLLSYIQSEVRSCRYAAVKYANA 485 (501)
T ss_pred HHHhhccchhHHHHHHHHHHHHH
Confidence 22 22233444566666654333
No 204
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.12 E-value=5.3 Score=42.17 Aligned_cols=129 Identities=12% Similarity=0.122 Sum_probs=92.7
Q ss_pred HHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCc-c----hHHHHHHHHHHHHHhcCCCc
Q 006253 349 GGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEK-L----VPLVNIALNFMLTALMQDPN 423 (653)
Q Consensus 349 a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~-~----~~~l~~l~~~ll~~l~~d~~ 423 (653)
....+..+++..|.-++..+ ..+.+.+.+.+.-.|.+.+-+++.++....++. + ..-+..++..+...+ .|.+
T Consensus 282 islFl~kls~l~p~i~lrq~-~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl-~D~~ 359 (1128)
T COG5098 282 ISLFLNKLSELSPGIMLRQY-EHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERL-SDTY 359 (1128)
T ss_pred HHHHHHHHhhcCchHHHHHH-HHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHh-hccc
Confidence 44456666766665444433 234466778888999999999998876542221 2 224567788888899 9999
Q ss_pred hHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc-hhhHHHHHHHHHHHHHhc
Q 006253 424 NHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQG 487 (653)
Q Consensus 424 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~~ 487 (653)
|.+|..|+..+..++..-.. ...--..+.....+.++| +..||.+|...+..+...
T Consensus 360 py~RtKalqv~~kifdl~sk--------~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~ 416 (1128)
T COG5098 360 PYTRTKALQVLEKIFDLNSK--------TVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMR 416 (1128)
T ss_pred hHHHHHHHHHHHHHHhCccc--------ccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhc
Confidence 99999999999998875431 334456788888899998 688999998888877643
No 205
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=94.75 E-value=8.2 Score=42.49 Aligned_cols=181 Identities=10% Similarity=0.112 Sum_probs=104.0
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhc------------cc
Q 006253 98 LKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVS------------SD 165 (653)
Q Consensus 98 l~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~------------~~ 165 (653)
...-.+..+.+|.++...+..+...... ..--.++..+++...++--.+++..-.++..=...++ ++
T Consensus 478 ~~rClDkaaavR~~al~s~tk~l~l~~~-~~~~sIl~~~inS~~d~~fs~ves~~~~~~~~~~~~s~~~~tt~~l~~~~~ 556 (1529)
T KOG0413|consen 478 YMRCLDKAAAVRLHALNSLTKILQLQSH-REAFSILCATINSEMDEKFSAVESLEDLNVSGKAPSSKTKKTTDLLLDEQQ 556 (1529)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhcc-cchHHHHHHhcCCccccchhHHHhchhhhhcccCcccccccchhhcCcchh
Confidence 3333456689999999999998876533 1222444444444443333344333322221111010 00
Q ss_pred cc--------c--hhh-HhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHH
Q 006253 166 AV--------E--QDH-VNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVK 234 (653)
Q Consensus 166 ~~--------~--~~~-~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~ 234 (653)
.+ + ... -..++.++...++. |....+++.|+..+.+...+....-.. ...+-+|-...+++-..
T Consensus 557 ii~d~~~~~~~~ge~~~e~~V~~mi~Rr~~~-d~k~~v~k~a~~~l~S~l~~cD~~~~f----e~~L~iLq~lCrd~~vs 631 (1529)
T KOG0413|consen 557 IIQDFKLKLMNKGETRVEKDVVYMIVRRLST-DDKAPVKKAACSLLKSYLSYCDEASKF----EVVLSILQMLCRDRMVS 631 (1529)
T ss_pred hhhhcchhhhhccccHHHHHHHHHHHHHhcc-CCCcccchhhHHHHHHHHhccchhhcc----hhHHHHHHHHhcCcchH
Confidence 00 0 001 23466677777775 556678999999999887776432111 22344555555677788
Q ss_pred HHHHHHHHHHHHHHHhHHhh---HHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhh
Q 006253 235 IRQAAFECLVAISSTYYEKL---APYIQDIFNITAKAVREDEEPVALQAIEFWSSVC 288 (653)
Q Consensus 235 ~~~~~~~~l~~l~~~~~~~~---~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~ 288 (653)
+|+.++..|.++....|..+ ..++..+++ .+.+.+..+...|+.++..+.
T Consensus 632 vrk~~~~Sltel~~~~pr~~~~~~~wl~~li~----~~~d~es~v~e~a~~~i~k~l 684 (1529)
T KOG0413|consen 632 VRKTGADSLTELMLRDPRLFSLSSKWLHTLIS----MLNDTESDVTEHARKLIMKVL 684 (1529)
T ss_pred HHHHHHHHHHHHHhhCchhhhhhHHHHHHHHH----HHhccHHHHHHHHHHHHHHHH
Confidence 99999999999888877665 234444444 344556667777777665544
No 206
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=94.59 E-value=2 Score=44.31 Aligned_cols=98 Identities=12% Similarity=0.145 Sum_probs=66.3
Q ss_pred cccHhhhHHHHHHHHHhhcCCCchhchHH-HHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcC
Q 006253 342 AWNIAMAGGTCLGLVARTVGDDIVPLVMP-FVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQ 420 (653)
Q Consensus 342 ~~~~r~~a~~~L~~l~~~~~~~~~~~l~~-~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~ 420 (653)
.+..|..|+++|+.+....++.....+.. .+..+++++..-.|..+.+.+...+.........+....+.+.+...| .
T Consensus 100 v~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L-~ 178 (441)
T PF12054_consen 100 VIRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEIL-E 178 (441)
T ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHH-c
Confidence 46789999999999999998777776666 688899999888899998888887765421111111334455566666 4
Q ss_pred CCc-----------hHHHHHHHHHHHHHHhh
Q 006253 421 DPN-----------NHVKDTTAWTLGRMFEF 440 (653)
Q Consensus 421 d~~-----------~~vr~~a~~~l~~~~~~ 440 (653)
++. .++|..+...+..|...
T Consensus 179 ~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~ 209 (441)
T PF12054_consen 179 NPEPPYYDELVPSLKRLRTECQQLLATFRDV 209 (441)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 322 24666666555555543
No 207
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=94.53 E-value=14 Score=44.22 Aligned_cols=115 Identities=17% Similarity=0.232 Sum_probs=76.2
Q ss_pred chHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc-h-hhHHHHHHHH
Q 006253 403 LVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-V-PNVAEKACGA 480 (653)
Q Consensus 403 ~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~-~~v~~~a~~a 480 (653)
+..|++.++...-..+ .++++.|+..+...+..+...+. .-+-+.|+..|+.++.+ + ..| ..|...
T Consensus 429 L~~~f~siL~la~~Ll-~S~e~~v~~FG~~~Y~~lF~~fd----------s~~qqeVv~~Lvthi~sg~~~ev-~~aL~v 496 (1426)
T PF14631_consen 429 LKDYFPSILSLAQSLL-RSKEPSVREFGSHLYKYLFKEFD----------SYCQQEVVGALVTHIGSGNSQEV-DAALDV 496 (1426)
T ss_dssp HTTSHHHHHHHHHHHH-TSSSHHHHHHHHHHHHHHHHSS-----------HHHHHHHHHHHHHHHHH--HHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHhhcc----------chhHHHHHHHHHHHHcCCcHHHH-HHHHHH
Confidence 4456777777777778 89999999999998888877663 12346788888888764 3 344 567777
Q ss_pred HHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhcc
Q 006253 481 LYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCST 539 (653)
Q Consensus 481 l~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~ 539 (653)
|..++... ++.+.||. .++..++..+.+-+ ...+| .++..+..++-..+
T Consensus 497 L~~L~~~~------~~~l~~fa-~~l~giLD~l~~Ls--~~qiR-~lf~il~~La~~~~ 545 (1426)
T PF14631_consen 497 LCELAEKN------PSELQPFA-TFLKGILDYLDNLS--LQQIR-KLFDILCTLAFSDS 545 (1426)
T ss_dssp HHHHHHH-------HHHHHHTH-HHHHGGGGGGGG----HHHHH-HHHHHHHHHHHHHS
T ss_pred HHHHHhcc------HHHHHHHH-HHHHHHHHHHhcCC--HHHHH-HHHHHHHHHhcCCc
Confidence 77777642 34455653 34555556665544 35677 68999998886543
No 208
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=94.47 E-value=7.4 Score=40.77 Aligned_cols=292 Identities=11% Similarity=0.098 Sum_probs=146.9
Q ss_pred hHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHH
Q 006253 146 HTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVC 225 (653)
Q Consensus 146 ~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~ 225 (653)
..|..++.-+...+..++ + ..+..++......+.. +...+.|.++++.+..++..-... ....|..++..+.
T Consensus 5 ~~R~~a~~~l~~~i~~~~---~--~~i~~iW~~~~DLi~~-~~p~e~R~~~~~ll~~~i~~~~~~--~~~~R~~fF~~I~ 76 (464)
T PF11864_consen 5 SERIKAAEELCESIQKYP---L--SSIEEIWYAAKDLIDP-NQPSEARRAALELLIACIKRQDSS--SGLMRAEFFRDIS 76 (464)
T ss_pred HHHHHHHHHHHHHHHhCC---c--hHHHHHHHHHhhhcCC-CCCHHHHHHHHHHHHHHHHccccc--cHHHHHHHHHHHh
Confidence 345566666665555542 2 4456677776666664 556789999999999988753221 1233455666664
Q ss_pred hhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhcC---------------------------ChhHHH
Q 006253 226 EATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVRED---------------------------EEPVAL 278 (653)
Q Consensus 226 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~---------------------------~~~~~~ 278 (653)
....+++.+.+-.++..|.. .|+.+..+..++.+.+..-+... ++..-.
T Consensus 77 ~~~~~~d~~~~l~aL~~LT~----~Grdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 152 (464)
T PF11864_consen 77 DPSNDDDFDLRLEALIALTD----NGRDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLS 152 (464)
T ss_pred cCCCchhHHHHHHHHHHHHc----CCcCchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHH
Confidence 44444555555555555553 34444333333433333222110 111111
Q ss_pred HHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHh
Q 006253 279 QAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVAR 358 (653)
Q Consensus 279 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~ 358 (653)
..+.++..+.... ...+-+..+..++..++........ + + .+ ..+...++.+..
T Consensus 153 ~ll~~l~nviKfn------------------~~~l~e~~i~~lv~~i~~iC~~Ts~-~---~---di-~~~L~vldaii~ 206 (464)
T PF11864_consen 153 DLLQFLVNVIKFN------------------FNYLDEDEISSLVDQICTICKSTSS-E---D---DI-EACLSVLDAIIT 206 (464)
T ss_pred HHHHHHHHHHhcC------------------CCCCCHHHHHHHHHHHHHHHhccCc-H---H---HH-HHHHHHHHHHHH
Confidence 2222222222110 0001122222333333332111110 0 0 12 367777888776
Q ss_pred h--cCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHH-HHhcCCCchHHHHHHHHHHH
Q 006253 359 T--VGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFML-TALMQDPNNHVKDTTAWTLG 435 (653)
Q Consensus 359 ~--~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll-~~l~~d~~~~vr~~a~~~l~ 435 (653)
+ .|...++.++..+....+.. .....+-.++..++.+.. -...+..+...+. ..-...++..+..-|...++
T Consensus 207 y~~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~---g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~ 281 (464)
T PF11864_consen 207 YGDIPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHL---GHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLR 281 (464)
T ss_pred cCcCChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCcc---HHHHHHHHHHHHcccCccccccHHHHhhHHHHHH
Confidence 3 46778888888877665443 334455556777776421 1111222222221 00002244566667778888
Q ss_pred HHHhhhccCCCCccccCccchHH--HHHHHHHhccc-hhhHHHHHHHHHHHHH
Q 006253 436 RMFEFLHGSTLETPIINQGNCQQ--IISVLLQSMKD-VPNVAEKACGALYFLA 485 (653)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~--il~~l~~~l~d-~~~v~~~a~~al~~~~ 485 (653)
.+.-..++.. ...--+.+ +++.+...++. ++.|-.....++.+++
T Consensus 282 ~ll~~~~~~~-----~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 282 MLLWGSGEQG-----YPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred HHHhccccCC-----cceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 7765553211 11223444 89999999884 6677667777777777
No 209
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=94.45 E-value=4.7 Score=40.54 Aligned_cols=225 Identities=15% Similarity=0.101 Sum_probs=131.4
Q ss_pred HhcCCChHHHHHHHHHHHHHHhhCcchHHHHHHH---------HHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhh
Q 006253 11 NAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAG---------ELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQR 81 (653)
Q Consensus 11 ~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~l~~---------il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~ 81 (653)
-+++++.++|..|..-+.-+-.. +.++..+.+ -+..++.....|..|..+.|..+..+...
T Consensus 33 ~lL~~~~~vraa~yRilRy~i~d--~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~-------- 102 (371)
T PF14664_consen 33 MLLSDSKEVRAAGYRILRYLISD--EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGP-------- 102 (371)
T ss_pred HHCCCcHHHHHHHHHHHHHHHcC--HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCc--------
Confidence 56777899999999888765544 344433322 23333456789999999999988753210
Q ss_pred ccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCC-CCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHh
Q 006253 82 WLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPH-KQWPELIGALLSNIHQLPPHTKQATLETLGYICE 160 (653)
Q Consensus 82 ~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~ 160 (653)
..+| ..+.+.++....+++...|..+-..+..++-.+ |. -.+.+=+..+.+.+.++....-+..+.++-.+..
T Consensus 103 -~~~~----~~vvralvaiae~~~D~lr~~cletL~El~l~~-P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd 176 (371)
T PF14664_consen 103 -KEIP----RGVVRALVAIAEHEDDRLRRICLETLCELALLN-PELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLD 176 (371)
T ss_pred -ccCC----HHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC-HHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhC
Confidence 1233 456777888888888999999999999999876 41 1234455677777766554455555555555544
Q ss_pred hhc-ccccch-hhHhHHHHHHHhcc-cCCCCCH--HHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHH
Q 006253 161 EVS-SDAVEQ-DHVNKILTAVVQGM-NASESNN--DVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKI 235 (653)
Q Consensus 161 ~~~-~~~~~~-~~~~~l~~~l~~~l-~~~~~~~--~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~ 235 (653)
.-. ..++.. -.+..++..+...- .....+. +.-..+..++..++...++.+......-.-++.+...+..+.+++
T Consensus 177 ~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~i 256 (371)
T PF14664_consen 177 SPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEI 256 (371)
T ss_pred CcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHH
Confidence 311 111200 12344444444331 0001222 233445555555554333222100000135666677777788899
Q ss_pred HHHHHHHHHHHHHHhH
Q 006253 236 RQAAFECLVAISSTYY 251 (653)
Q Consensus 236 ~~~~~~~l~~l~~~~~ 251 (653)
|+.+++.+..+....+
T Consensus 257 r~~Ildll~dllrik~ 272 (371)
T PF14664_consen 257 RKAILDLLFDLLRIKP 272 (371)
T ss_pred HHHHHHHHHHHHCCCC
Confidence 9999999998887544
No 210
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.35 E-value=1.1 Score=44.07 Aligned_cols=129 Identities=16% Similarity=0.175 Sum_probs=98.2
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhh
Q 006253 131 ELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQAN 210 (653)
Q Consensus 131 ~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~ 210 (653)
.-+..|+..+...+..+|..++.-+..+.... |..+ +.+...+++.+...+. |.+..+|......+-..+......
T Consensus 58 ltlkeLl~qlkHhNakvRkdal~glkd~l~s~-p~~l-~~~~~~ll~~~~~~i~--D~~~~vR~~~~qll~~~i~~~~~e 133 (393)
T KOG2149|consen 58 LTLKELLSQLKHHNAKVRKDALNGLKDLLKSH-PAEL-QSHLYALLQKLRELIL--DDDSLVRDALYQLLDSLILPACKE 133 (393)
T ss_pred ccHHHHHhhhcCchHhhhHHHHHHHHHHHHhC-hHHH-HHHHHHHHHHhhhhhc--CccccHHHHHHHHHHHHHhhcchh
Confidence 45567777788889999999999999988875 7766 6778888888888888 788899998888887765433221
Q ss_pred cCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHH
Q 006253 211 FSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNI 264 (653)
Q Consensus 211 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~ 264 (653)
. .......+++.+...+.+-.++++..++..|..++..++..+..+...+++.
T Consensus 134 ~-~sp~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n 186 (393)
T KOG2149|consen 134 D-QSPMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILEN 186 (393)
T ss_pred h-hcchHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHH
Confidence 1 1123466788888888889999999999999999999876665544444443
No 211
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=94.32 E-value=0.31 Score=38.91 Aligned_cols=94 Identities=14% Similarity=0.233 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHHHHhcCC----CchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc---hhhHHHH
Q 006253 404 VPLVNIALNFMLTALMQD----PNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD---VPNVAEK 476 (653)
Q Consensus 404 ~~~l~~l~~~ll~~l~~d----~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d---~~~v~~~ 476 (653)
.+++-.++..+-..+ +| ....-|..++.+++.+.+.. ..++....|.+...|+. .+.++..
T Consensus 6 ~~~~Lgil~~f~~~l-~d~~~~~~~~ek~~~l~si~~lI~~~-----------~~~i~~~~pQI~a~L~sal~~~~l~~~ 73 (107)
T PF08064_consen 6 QPHILGILTRFSDVL-NDLRGKKPIPEKKRALRSIEELIKLG-----------GSHISSARPQIMACLQSALEIPELREE 73 (107)
T ss_pred HHHHHHHHHHHHHHH-hccccCCCHHHHHHHHHHHHHHHHHh-----------HHHHHHHHHHHHHHHHHHhCChhhHHH
Confidence 344445555555555 55 45577899999999999943 34555555555555542 5689999
Q ss_pred HHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhcc
Q 006253 477 ACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTH 514 (653)
Q Consensus 477 a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~ 514 (653)
|+.+...|++.++ .+.+.|+++.++-.++..++
T Consensus 74 al~~W~~fi~~L~-----~~~l~~ll~~~~~~l~~~~~ 106 (107)
T PF08064_consen 74 ALSCWNCFIKTLD-----EEDLGPLLDQIFAILLPLWD 106 (107)
T ss_pred HHHHHHHHHHHCC-----HHHHHHHHHHHHHHHHHhcc
Confidence 9999999999986 36788888888888877654
No 212
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.29 E-value=22 Score=45.44 Aligned_cols=335 Identities=15% Similarity=0.131 Sum_probs=172.7
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhc---C--C-----CCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhh
Q 006253 92 QIKSFILKTLSSPAHDARSTASQVVAKVAGIEL---P--H-----KQWPELIGALLSNIHQLPPHTKQATLETLGYICEE 161 (653)
Q Consensus 92 ~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~---~--~-----~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~ 161 (653)
...+.|.++++++++.++.....++..+..... + + ..+..+++.+++.+.++.+..+.++...+..+++.
T Consensus 984 i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~ 1063 (3550)
T KOG0889|consen 984 TFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIES 1063 (3550)
T ss_pred HHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhh
Confidence 456788889999999999988888888766421 1 1 24568889999999999999999999999988888
Q ss_pred hcccccchhhHhHHHHHHHhcccCCCCCHHH----HHHHHHHHHHHHHhhhhhcCChhHHH----HHHHHHHhhhcCCcH
Q 006253 162 VSSDAVEQDHVNKILTAVVQGMNASESNNDV----RLAATRALYNALGFAQANFSNDMERD----YIMRVVCEATLSPEV 233 (653)
Q Consensus 162 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v----r~~a~~~l~~~~~~~~~~~~~~~~~~----~il~~l~~~~~~~~~ 233 (653)
. +...-......++..+...+. |...++ ...+-.++..++..+.........+. .++..+..-+.+++.
T Consensus 1064 ~-~~~~l~d~~~d~~~~l~fvl~--d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~ 1140 (3550)
T KOG0889|consen 1064 M-PSLWLLDFQVDILKALFFVLK--DTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNS 1140 (3550)
T ss_pred c-hHHHHHHHHHHHhhhHHHhhc--CCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCch
Confidence 7 421102334445555544444 221121 12333344433332222111111121 122233333456778
Q ss_pred HHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHH-HHHhhc----CChhHHHH---HHHhHHHhhHHHHhhhhhcCCCCCCC
Q 006253 234 KIRQAAFECLVAISSTYYEKLAPYIQDIFNIT-AKAVRE----DEEPVALQ---AIEFWSSVCDEEIDILEEYGGDFSGD 305 (653)
Q Consensus 234 ~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~-~~~~~~----~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (653)
.+|+.+.++|..+.+..+..+...+..+-..+ ...+.. ..-.+... ++.+...++..
T Consensus 1141 ~VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~l~p~--------------- 1205 (3550)
T KOG0889|consen 1141 DVREFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLSLGPC--------------- 1205 (3550)
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHHcCCc---------------
Confidence 99999999999988877433333222222222 111111 11111111 11111111110
Q ss_pred CCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHH
Q 006253 306 SDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQRE 385 (653)
Q Consensus 306 ~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~ 385 (653)
.+.+...... +. .....+...++ +++.| +.+..- .......-..|-
T Consensus 1206 ----~f~~~~~l~~-l~-~~~~~La~~~~----~~~~~------------i~k~~~------------~k~~~~l~~Lr~ 1251 (3550)
T KOG0889|consen 1206 ----LFDFTEELYR-LK-RFLIALADAEE----DELAT------------IQKTSD------------YKNSSSLVRLRV 1251 (3550)
T ss_pred ----ccCchHHHHH-HH-HHHHHhhhhhh----hhhhh------------hhcccc------------cccccccccchh
Confidence 0111111000 00 00011111111 01000 111000 000111224566
Q ss_pred HHHHHHHHhhcCC--CCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHH
Q 006253 386 AATYAFGSILEGP--SPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVL 463 (653)
Q Consensus 386 aal~~l~~i~~~~--~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l 463 (653)
+++.+++...... +..+..++...++..+++.+ ...++.+..++..++......-+ ...++.++..+..+
T Consensus 1252 ~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l-~~~~~Ei~~~~~~~l~~v~~~~~-------~~~ke~lq~~lrpl 1323 (3550)
T KOG0889|consen 1252 ACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSL-YKRSSELIEVALEGLRKVLAQDV-------KLPKELLQSHLRPL 1323 (3550)
T ss_pred HHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHH-cCChHHHHHHHHHHHHhhhhccc-------cccHHHHHhhHHHH
Confidence 7776666544322 12345667788888899999 88888999998888877665422 23577888889888
Q ss_pred HHhccchhhHHHHHHHHHHHHHh
Q 006253 464 LQSMKDVPNVAEKACGALYFLAQ 486 (653)
Q Consensus 464 ~~~l~d~~~v~~~a~~al~~~~~ 486 (653)
+..+.|..+....+...++.+..
T Consensus 1324 L~~l~d~~~lsv~~l~~ls~l~~ 1346 (3550)
T KOG0889|consen 1324 LMNLSDHNNLSVPGLEGLSRLLR 1346 (3550)
T ss_pred HHhhhHhhhhhHHHHHHHHHHHH
Confidence 88888633333344444444443
No 213
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=94.21 E-value=0.71 Score=35.53 Aligned_cols=74 Identities=12% Similarity=0.123 Sum_probs=57.6
Q ss_pred HHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhh
Q 006253 176 LTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKL 254 (653)
Q Consensus 176 ~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 254 (653)
+...+..+. |+.+-+|..++..|..++.--. ......+.++..+...++++|+-+.-+++++|..++..+++.+
T Consensus 5 ~~~al~~L~--dp~~PvRa~gL~~L~~Li~~~~---~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~v 78 (92)
T PF10363_consen 5 LQEALSDLN--DPLPPVRAHGLVLLRKLIESKS---EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEV 78 (92)
T ss_pred HHHHHHHcc--CCCcchHHHHHHHHHHHHHcCC---cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHH
Confidence 334455566 7888899999999999886432 1222346788999999999999999999999999999888643
No 214
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.15 E-value=5.9 Score=46.15 Aligned_cols=106 Identities=10% Similarity=0.171 Sum_probs=76.5
Q ss_pred HHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhH-HHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHh
Q 006253 175 ILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDME-RDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEK 253 (653)
Q Consensus 175 l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 253 (653)
-+..+++.+. ..++..|..|+..+..++.-.... .... ...+.....+++.+++..+|......+..+.....+.
T Consensus 42 el~~I~kkL~--KkD~~TK~KaL~eL~eli~~~~~e--~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~ 117 (1312)
T KOG0803|consen 42 ELDIIVKKLL--KRDETTKIKALQELSELIDTSDTE--ELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKK 117 (1312)
T ss_pred HHHHHHHHHh--ccChHHHHHHHHhHHHhcccccch--HHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555 577899999999999877532211 1111 1234445566777899999999999999999999999
Q ss_pred hHHhHHHHHHHHHHHhhcCChhHHHHHHHhH
Q 006253 254 LAPYIQDIFNITAKAVREDEEPVALQAIEFW 284 (653)
Q Consensus 254 ~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~ 284 (653)
+.||+..++|..+-...+.+..+...|....
T Consensus 118 lsp~LK~li~~wl~~~~d~~~~vs~aa~~sf 148 (1312)
T KOG0803|consen 118 LSPFLKSLIPPWLGGQFDLDYPVSEAAKASF 148 (1312)
T ss_pred hhHHHHhhhhhhhheecccchHHHHHHHHHH
Confidence 9999999999988777777777766665443
No 215
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.14 E-value=0.69 Score=47.12 Aligned_cols=151 Identities=16% Similarity=0.182 Sum_probs=98.8
Q ss_pred HHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHH-hcCCCchHHHHHHHHHHHHHHhhhccCCCCcc
Q 006253 371 FVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTA-LMQDPNNHVKDTTAWTLGRMFEFLHGSTLETP 449 (653)
Q Consensus 371 ~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~-l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 449 (653)
.+.+++.|.+...|+++.++++.---|.+.. .++..++.. . .|.+--||++|.-+||-+|-.
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alAy~GTgn~-------~vv~~lLh~av-sD~nDDVrRAAViAlGfvc~~--------- 582 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALAYVGTGNL-------GVVSTLLHYAV-SDGNDDVRRAAVIALGFVCCD--------- 582 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHHHhcCCcc-------hhHhhhheeec-ccCchHHHHHHHHheeeeEec---------
Confidence 4567788888999999998887654444312 223444444 6 889999999999999866532
Q ss_pred ccCccchHHHHHHHHHhccchhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccchhchHHHHHH
Q 006253 450 IINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYE 529 (653)
Q Consensus 450 ~~~~~~~~~il~~l~~~l~d~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~ 529 (653)
....+...++.|.+. .|+.||...+.+++-.|..-+. ...-+++..|+. ++ .+.+|..|+-
T Consensus 583 --D~~~lv~tvelLs~s--hN~hVR~g~AvaLGiacag~G~---------~~a~diL~~L~~---D~---~dfVRQ~AmI 643 (926)
T COG5116 583 --DRDLLVGTVELLSES--HNFHVRAGVAVALGIACAGTGD---------KVATDILEALMY---DT---NDFVRQSAMI 643 (926)
T ss_pred --CcchhhHHHHHhhhc--cchhhhhhhHHHhhhhhcCCcc---------HHHHHHHHHHhh---Cc---HHHHHHHHHH
Confidence 233444444433332 2789999999999988875431 223344444433 33 2578889999
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHH
Q 006253 530 TLNEVVRCSTDETAPMVMQLVPLIMMEL 557 (653)
Q Consensus 530 ~l~~l~~~~~~~~~~~~~~l~~~l~~~l 557 (653)
+++.+..-+.++..|-+..+...+.+.+
T Consensus 644 a~~mIl~Q~n~~Lnp~v~~I~k~f~~vI 671 (926)
T COG5116 644 AVGMILMQCNPELNPNVKRIIKKFNRVI 671 (926)
T ss_pred HHHHHHhhcCcccChhHHHHHHHHHHHH
Confidence 9999888777777777776544444433
No 216
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.11 E-value=1.1 Score=45.81 Aligned_cols=154 Identities=16% Similarity=0.190 Sum_probs=95.0
Q ss_pred HhhhHHHHHHHHHhhcC-CCchhchHHHHHhhhcC----cchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhc
Q 006253 345 IAMAGGTCLGLVARTVG-DDIVPLVMPFVEENITK----QEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALM 419 (653)
Q Consensus 345 ~r~~a~~~L~~l~~~~~-~~~~~~l~~~l~~~l~~----~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~ 419 (653)
.|..|. ..+..-.| ..++|.++.+|.+.+.- .+.+.-.-.+..+.++.++. .-.+++|+..++|.++.++-
T Consensus 223 ~r~eAL---~sL~TDsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np-~i~lepYlh~L~PSvlTCvV 298 (576)
T KOG2549|consen 223 LRQEAL---QSLETDSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNP-NIFLEPYLHQLVPSVLTCVV 298 (576)
T ss_pred HHHHHH---HhhccCccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCC-ccchhhHHHHHhhHHHHhhh
Confidence 455444 44444444 34556666666554432 23333334455567788775 35679999999999998861
Q ss_pred ---------CCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccchh---hHHHHHHHHHHHHHhc
Q 006253 420 ---------QDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVP---NVAEKACGALYFLAQG 487 (653)
Q Consensus 420 ---------~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~---~v~~~a~~al~~~~~~ 487 (653)
.|.|..+|.-|+..+..++..+.+. ....-..+...+...+.|+. ....-|...|..|-..
T Consensus 299 sk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~-------y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg~~ 371 (576)
T KOG2549|consen 299 SKNLCLRPELDNHWALRDFAARLLAQICKNFSTL-------YNNLQPRITRTLSKALLDNKKPLSTHYGAIAGLSELGHE 371 (576)
T ss_pred hhhccCCccccchHHHHHHHHHHHHHHHHhhhhH-------HHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHhhhh
Confidence 3678899999999999999988642 23355566777777777742 3344444455544432
Q ss_pred ccCCCCCCCCCchhHHHHHHHHHHhcc
Q 006253 488 FEDAISPSSPLTPFFQEIVQALLTVTH 514 (653)
Q Consensus 488 ~~~~~~~~~~l~~~l~~i~~~L~~~l~ 514 (653)
. ....+.|.+......+...+.
T Consensus 372 ~-----I~~~ilp~L~~~~~~l~~~l~ 393 (576)
T KOG2549|consen 372 V-----IRTVILPNLKEYNERLQSVLD 393 (576)
T ss_pred h-----hhheeccchHHHHHHhhhhcc
Confidence 1 234566777776666666554
No 217
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.06 E-value=1.7 Score=45.61 Aligned_cols=118 Identities=17% Similarity=0.196 Sum_probs=90.5
Q ss_pred cCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCC--------CCCchHHHHHHHhhcCCChhHHHHHHHH
Q 006253 83 LSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPH--------KQWPELIGALLSNIHQLPPHTKQATLET 154 (653)
Q Consensus 83 ~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~--------~~~~~l~~~l~~~l~~~~~~~~~~~l~~ 154 (653)
..++|...-.-.+.+.+.|.+++-.+|-....+.+.++.+.... ...+.++..+.+.+++..|..|..|+++
T Consensus 290 s~l~p~i~lrq~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv 369 (1128)
T COG5098 290 SELSPGIMLRQYEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQV 369 (1128)
T ss_pred hhcCchHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Confidence 44666655555567788888888999999999999887653221 1346788889999999999999999999
Q ss_pred HHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHH
Q 006253 155 LGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALG 205 (653)
Q Consensus 155 l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~ 205 (653)
+..+++.- .... ..-..+...+...+. |.+.-||+.|++.++.++.
T Consensus 370 ~~kifdl~-sk~~--~~r~ev~~lv~r~lq--Drss~VRrnaikl~SkLL~ 415 (1128)
T COG5098 370 LEKIFDLN-SKTV--GRRHEVIRLVGRRLQ--DRSSVVRRNAIKLCSKLLM 415 (1128)
T ss_pred HHHHHhCc-cccc--chHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHHh
Confidence 99998864 2222 333567777788888 8899999999999988764
No 218
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=93.99 E-value=1 Score=47.61 Aligned_cols=168 Identities=10% Similarity=0.080 Sum_probs=105.8
Q ss_pred HHHHHHHHHhcCC-CChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccch
Q 006253 91 AQIKSFILKTLSS-PAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQ 169 (653)
Q Consensus 91 ~~i~~~ll~~l~~-~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~ 169 (653)
..+...|...++. .+..++--+.+=...|.+..-++..-..++|.|...+.+.+..+++.++..+..+++.++..
T Consensus 348 ~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~---- 423 (700)
T KOG2137|consen 348 PKMLPALKPIYSASDPKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVP---- 423 (700)
T ss_pred hhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHH----
Confidence 3445555555553 23455555555555566665443455788999999999999999999999999999887422
Q ss_pred hhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q 006253 170 DHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISST 249 (653)
Q Consensus 170 ~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~ 249 (653)
..-..|+|.+.+.... ..+..++..++-|+..+++.+..- ...+.+++++ ...+-.++.+....+.....++-.
T Consensus 424 ~vk~~ilP~l~~l~~~-tt~~~vkvn~L~c~~~l~q~lD~~----~v~d~~lpi~-~~~~~~dp~iv~~~~~i~~~l~~~ 497 (700)
T KOG2137|consen 424 FVKQAILPRLKNLAFK-TTNLYVKVNVLPCLAGLIQRLDKA----AVLDELLPIL-KCIKTRDPAIVMGFLRIYEALALI 497 (700)
T ss_pred HHHHHHHHHhhcchhc-ccchHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHH-HHhcCCCcHHHHHHHHHHHHHHhh
Confidence 2245688888766443 678899999999999988654321 1113344443 334456777777777766666655
Q ss_pred hHHhhHHhHHHHHHHHHHH
Q 006253 250 YYEKLAPYIQDIFNITAKA 268 (653)
Q Consensus 250 ~~~~~~~~l~~l~~~~~~~ 268 (653)
.+....-..+.++|.++-.
T Consensus 498 ~~~g~ev~~~~VlPlli~l 516 (700)
T KOG2137|consen 498 IYSGVEVMAENVLPLLIPL 516 (700)
T ss_pred cccceeeehhhhhhhhhhh
Confidence 5442112234555555543
No 219
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=93.97 E-value=7.2 Score=38.72 Aligned_cols=203 Identities=9% Similarity=0.083 Sum_probs=104.2
Q ss_pred chHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 006253 36 PGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQV 115 (653)
Q Consensus 36 ~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~ 115 (653)
+.+...++.++.... .+++-.....++-..+....+- ...+.......+...-...++.|...+.-+-...+.+
T Consensus 64 ~~~v~~fi~LlS~~~-kdd~v~yvL~li~DmLs~d~sr-----~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~I 137 (442)
T KOG2759|consen 64 AQYVKTFINLLSHID-KDDTVQYVLTLIDDMLSEDRSR-----VDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRI 137 (442)
T ss_pred HHHHHHHHHHhchhh-hHHHHHHHHHHHHHHHhhCchH-----HHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHH
Confidence 466666777776533 4445555666666555432110 0111111111222223456778888888888889999
Q ss_pred HHHHHhhhc---CCCCCchHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhhc--ccccchhhHhHHHHHHHhcccCCCCC
Q 006253 116 VAKVAGIEL---PHKQWPELIGALLSNIHQ-LPPHTKQATLETLGYICEEVS--SDAVEQDHVNKILTAVVQGMNASESN 189 (653)
Q Consensus 116 l~~ia~~~~---~~~~~~~l~~~l~~~l~~-~~~~~~~~~l~~l~~l~~~~~--~~~~~~~~~~~l~~~l~~~l~~~~~~ 189 (653)
++.++..-. +.....=....|...+++ .+...+..+..||..++..-+ ........+.-+++.+. ++ ..+
T Consensus 138 ls~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~---s~-~~~ 213 (442)
T KOG2759|consen 138 LSKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILA---ST-KCG 213 (442)
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHh---cc-Ccc
Confidence 999887531 111223344555566655 677888899999999887531 11111122334444443 22 566
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcC-CcHHHHHHHHHHHHHHHHHh
Q 006253 190 NDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLS-PEVKIRQAAFECLVAISSTY 250 (653)
Q Consensus 190 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~l~~l~~~~ 250 (653)
..++...+-|+-.+- |-+ .+.....+-.+++.+..++++ -.+.+-+-++..+..+++..
T Consensus 214 ~QlQYqsifciWlLt-Fn~-~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~ 273 (442)
T KOG2759|consen 214 FQLQYQSIFCIWLLT-FNP-HAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKG 273 (442)
T ss_pred hhHHHHHHHHHHHhh-cCH-HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 777777777654322 111 110000112355555555532 23344444455555555544
No 220
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.87 E-value=0.96 Score=44.41 Aligned_cols=132 Identities=11% Similarity=0.081 Sum_probs=101.3
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc-hhhHHHHHHHHHHHHHhccc
Q 006253 411 LNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFE 489 (653)
Q Consensus 411 ~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~~~~ 489 (653)
+..++..+ ++.+..||..|+.-+.++....+ .........+++.+.....| +..||......+..++....
T Consensus 60 lkeLl~ql-kHhNakvRkdal~glkd~l~s~p-------~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~ 131 (393)
T KOG2149|consen 60 LKELLSQL-KHHNAKVRKDALNGLKDLLKSHP-------AELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPAC 131 (393)
T ss_pred HHHHHhhh-cCchHhhhHHHHHHHHHHHHhCh-------HHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcc
Confidence 34455667 99999999999999999887743 23455777888888888887 68899999999988776543
Q ss_pred CCCCCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Q 006253 490 DAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELH 558 (653)
Q Consensus 490 ~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~ 558 (653)
+..+.|++.-+++.+...+.... ..+|.-++..+..++..++..+..+...+++.+...+.
T Consensus 132 -----~e~~sp~~~l~~~yi~~AMThit---~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~i~ 192 (393)
T KOG2149|consen 132 -----KEDQSPMVSLLMPYISSAMTHIT---PEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDVIS 192 (393)
T ss_pred -----hhhhcchHHHHHHHHHHHHhhcc---HHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence 23478999999998888777654 56888899999999999998777666665555554443
No 221
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=93.60 E-value=1.7 Score=37.61 Aligned_cols=130 Identities=16% Similarity=0.216 Sum_probs=83.0
Q ss_pred ccchHHHHHHHHHhcc------------------c-hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhc
Q 006253 453 QGNCQQIISVLLQSMK------------------D-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVT 513 (653)
Q Consensus 453 ~~~~~~il~~l~~~l~------------------d-~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l 513 (653)
.+++..++|.++.... | --.+|..|..++..+++.+.. .+. +..++..+...+
T Consensus 4 ~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~------~~~--~~~~~~~v~~GL 75 (169)
T PF08623_consen 4 RPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLS------RID--ISEFLDRVEAGL 75 (169)
T ss_dssp TTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCS------SS---HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHH------hCC--HHHHHHHHHhhc
Confidence 4567888888876542 1 135799999999999997642 222 556677777777
Q ss_pred cccccchhchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHhHHHHHHHHhC
Q 006253 514 HREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLG 593 (653)
Q Consensus 514 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~ 593 (653)
.+ + ..++..++..+..++...+..+.+.++.+.+.+-..+..-.....+ ..+.+...++...++.++..+...+.
T Consensus 76 ~D-~---~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~k~k~~Av-kQE~Ek~~E~~rs~lr~~~~l~~~i~ 150 (169)
T PF08623_consen 76 KD-E---HDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSKKLKENAV-KQEIEKQQELIRSVLRAVKALNSKIP 150 (169)
T ss_dssp SS-----HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH----TTS--HHHHHHHHHHHHHHHHHHHHH-HSST
T ss_pred CC-c---HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhccCCCCcc-cccHHHHHHHHHHHHHHHHHHHHhCc
Confidence 76 3 4688889999999999998877777777777776666533221100 11222233455568888888877776
Q ss_pred CC
Q 006253 594 SS 595 (653)
Q Consensus 594 ~~ 595 (653)
..
T Consensus 151 ~~ 152 (169)
T PF08623_consen 151 GA 152 (169)
T ss_dssp S-
T ss_pred cc
Confidence 54
No 222
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=93.60 E-value=4.1 Score=39.55 Aligned_cols=148 Identities=12% Similarity=0.071 Sum_probs=101.9
Q ss_pred CcchhhHHHHHHHHHHhhc-CCCCCcchHHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHhhhccCCCCccccCccc
Q 006253 378 KQEWRQREAATYAFGSILE-GPSPEKLVPLVNIALNFMLTALMQDP-NNHVKDTTAWTLGRMFEFLHGSTLETPIINQGN 455 (653)
Q Consensus 378 ~~~~~~r~aal~~l~~i~~-~~~~~~~~~~l~~l~~~ll~~l~~d~-~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 455 (653)
..+|..--+++.-+....+ ........|.-..+...+..+| +.. ...|...|+.++..+.+.++.. .....
T Consensus 22 ~~EWAD~is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL-~P~LPsGVH~KaLevY~~IF~~ig~~------~L~~d 94 (307)
T PF04118_consen 22 SSEWADYISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCL-NPALPSGVHQKALEVYEYIFERIGPD------GLAQD 94 (307)
T ss_pred hhhHHHHHHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhc-CCCCChHHHHHHHHHHHHHHHhcCHH------HHHhh
Confidence 4678777776666665555 2212233344445677777887 433 2479999999999999988732 34455
Q ss_pred hHHHHHHHHHhccc-hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHH
Q 006253 456 CQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEV 534 (653)
Q Consensus 456 ~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l 534 (653)
+.-..+.+...+.. ...|+-.-...+..+.-.++ ..+.|.++.++..++..+.+.+ ++....++..+..+
T Consensus 95 l~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~------~~L~p~l~~li~slLpGLede~---sE~~~~~~~ll~~l 165 (307)
T PF04118_consen 95 LPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLG------PALRPCLKGLILSLLPGLEDEG---SEFFDRTLKLLDKL 165 (307)
T ss_pred cHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCcc------HHHHHHHHHHHHHhccccccCC---chHHHHHHHHHHHH
Confidence 56666677666663 56777776666766665443 3688999999999999998654 45677888899999
Q ss_pred HHhcccc
Q 006253 535 VRCSTDE 541 (653)
Q Consensus 535 ~~~~~~~ 541 (653)
...+|.+
T Consensus 166 ~~~v~~~ 172 (307)
T PF04118_consen 166 KEAVGDK 172 (307)
T ss_pred HHhcChh
Confidence 8888865
No 223
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=93.58 E-value=3.9 Score=44.94 Aligned_cols=78 Identities=22% Similarity=0.221 Sum_probs=46.1
Q ss_pred HhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCc---chhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCC
Q 006253 345 IAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQ---EWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQD 421 (653)
Q Consensus 345 ~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~---~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d 421 (653)
-+..+..+|+.+.. |..++.+...+.+. +...|-+|+++|..++..+ ++.+ .+.+++.+.. ..
T Consensus 506 ~~~~~LkaLgN~g~-------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~-~~~v---~~~l~~I~~n---~~ 571 (618)
T PF01347_consen 506 EKIVYLKALGNLGH-------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC-PEKV---REILLPIFMN---TT 571 (618)
T ss_dssp HHHHHHHHHHHHT--------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT--HHHH---HHHHHHHHH----TT
T ss_pred HHHHHHHHhhccCC-------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC-cHHH---HHHHHHHhcC---CC
Confidence 35567777777653 45555555555544 4688999999999887665 2222 2222333222 34
Q ss_pred CchHHHHHHHHHHHH
Q 006253 422 PNNHVKDTTAWTLGR 436 (653)
Q Consensus 422 ~~~~vr~~a~~~l~~ 436 (653)
.++.||-+|...|-.
T Consensus 572 e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 572 EDPEVRIAAYLILMR 586 (618)
T ss_dssp S-HHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHh
Confidence 678899999766553
No 224
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=93.52 E-value=0.14 Score=32.44 Aligned_cols=30 Identities=23% Similarity=0.551 Sum_probs=27.0
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHh
Q 006253 409 IALNFMLTALMQDPNNHVKDTTAWTLGRMFE 439 (653)
Q Consensus 409 ~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~ 439 (653)
..+|.++..+ +++++.++..|+|+|++++.
T Consensus 12 g~i~~Lv~ll-~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 12 GGIPPLVQLL-KSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp THHHHHHHHT-TSSSHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHH-cCCCHHHHHHHHHHHHHHhC
Confidence 3689999999 99999999999999999863
No 225
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=93.47 E-value=7.7 Score=42.14 Aligned_cols=153 Identities=17% Similarity=0.142 Sum_probs=82.9
Q ss_pred HHHHHHHHHhhc--C-CCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhc-CCCCCc------chHHHHHHHHHHHHHh
Q 006253 349 GGTCLGLVARTV--G-DDIVPLVMPFVEENITKQEWRQREAATYAFGSILE-GPSPEK------LVPLVNIALNFMLTAL 418 (653)
Q Consensus 349 a~~~L~~l~~~~--~-~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~-~~~~~~------~~~~l~~l~~~ll~~l 418 (653)
|..++..+.... + ...+..+.+++..--..++...|.+++.+++++.. .|.... ...+++.+...+-...
T Consensus 376 a~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~ 455 (574)
T smart00638 376 AAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAV 455 (574)
T ss_pred HHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHH
Confidence 444444444433 2 23444455444332223456788999999999876 332111 1233444444444444
Q ss_pred cCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc-hhhHHHHHHHHHHHHHhcccCCCCCCCC
Q 006253 419 MQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSP 497 (653)
Q Consensus 419 ~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~~~~~~~~~~~~ 497 (653)
+..+...+..++.+||++.... -+..+.+.+. +-.+ +..+|..|.+||..+.+...
T Consensus 456 -~~~~~~~~~~~LkaLGN~g~~~-------------~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p-------- 512 (574)
T smart00638 456 -SKGDEEEIQLYLKALGNAGHPS-------------SIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDP-------- 512 (574)
T ss_pred -hcCCchheeeHHHhhhccCChh-------------HHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCc--------
Confidence 4556667888899999876422 1122222222 1112 46899999999998876421
Q ss_pred CchhHHHHHHHHHHhccccccchhchHHHHHHH
Q 006253 498 LTPFFQEIVQALLTVTHREDAGESRLRTAAYET 530 (653)
Q Consensus 498 l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~ 530 (653)
..+.+.++.+..+... +.++|..|+-.
T Consensus 513 -----~~v~~~l~~i~~n~~e-~~EvRiaA~~~ 539 (574)
T smart00638 513 -----RKVQEVLLPIYLNRAE-PPEVRMAAVLV 539 (574)
T ss_pred -----hHHHHHHHHHHcCCCC-ChHHHHHHHHH
Confidence 1334445555554443 46788555443
No 226
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=93.41 E-value=15 Score=40.61 Aligned_cols=106 Identities=10% Similarity=0.165 Sum_probs=70.6
Q ss_pred HHHHHHHHhcCCC-ChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhccccc--c
Q 006253 92 QIKSFILKTLSSP-AHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAV--E 168 (653)
Q Consensus 92 ~i~~~ll~~l~~~-~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~--~ 168 (653)
.+...++..+... ...+|..++..+.++..+.-....+++.+-.|...+.++-..+|..++..|+.+...- |..+ .
T Consensus 576 ~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~~-pr~~~~~ 654 (1529)
T KOG0413|consen 576 DVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVLSILQMLCRDRMVSVRKTGADSLTELMLRD-PRLFSLS 654 (1529)
T ss_pred HHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHHHHHHHHhcCcchHHHHHHHHHHHHHHhhC-chhhhhh
Confidence 4555667777744 4689999999999988776333467777777777788888888999999998875543 4332 0
Q ss_pred hhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHH
Q 006253 169 QDHVNKILTAVVQGMNASESNNDVRLAATRALYNAL 204 (653)
Q Consensus 169 ~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~ 204 (653)
..-+..+++.+ + |....+...|.+.+..+.
T Consensus 655 ~~wl~~li~~~----~--d~es~v~e~a~~~i~k~l 684 (1529)
T KOG0413|consen 655 SKWLHTLISML----N--DTESDVTEHARKLIMKVL 684 (1529)
T ss_pred HHHHHHHHHHH----h--ccHHHHHHHHHHHHHHHH
Confidence 11123333333 3 666777777777666654
No 227
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=93.36 E-value=1.1 Score=34.55 Aligned_cols=75 Identities=23% Similarity=0.246 Sum_probs=57.6
Q ss_pred HHHHHHhccc-hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhc
Q 006253 460 ISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCS 538 (653)
Q Consensus 460 l~~l~~~l~d-~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~ 538 (653)
+...+..+.| .+.||..+...|..+++. +.......+.++..++..+.+++ +.+...|+.++..++...
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~-------~~~~~~~~~~il~l~l~~L~d~D---syVYL~aI~~L~~La~~~ 74 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIES-------KSEPVIDIPKILDLFLSQLKDED---SYVYLNAIKGLAALADRH 74 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHc-------CCcchhhHHHHHHHHHHHcCCCC---chHHHHHHHHHHHHHHHC
Confidence 4445556666 578999999999999985 22244567889999999998875 778889999999999988
Q ss_pred ccccHH
Q 006253 539 TDETAP 544 (653)
Q Consensus 539 ~~~~~~ 544 (653)
++.+.|
T Consensus 75 p~~vl~ 80 (92)
T PF10363_consen 75 PDEVLP 80 (92)
T ss_pred hHHHHH
Confidence 754333
No 228
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=93.15 E-value=1.9 Score=44.10 Aligned_cols=116 Identities=20% Similarity=0.141 Sum_probs=82.7
Q ss_pred hhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCc
Q 006253 374 ENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQ 453 (653)
Q Consensus 374 ~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~ 453 (653)
-.++|.+-.+|.||..++|-++-. +++ .++..+..|..+-|+.||...+.+||-.|...+.
T Consensus 559 ~avsD~nDDVrRAAViAlGfvc~~-D~~--------~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~---------- 619 (926)
T COG5116 559 YAVSDGNDDVRRAAVIALGFVCCD-DRD--------LLVGTVELLSESHNFHVRAGVAVALGIACAGTGD---------- 619 (926)
T ss_pred eecccCchHHHHHHHHheeeeEec-Ccc--------hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc----------
Confidence 346778888999999999987743 112 2344444453567899999999999988765431
Q ss_pred cchHHHHHHHHHhccc-hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccc
Q 006253 454 GNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHRED 517 (653)
Q Consensus 454 ~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~ 517 (653)
+..+..|-..+.| +.-||..|+.+++.+...+. ..+.|-+..|...+.+++.+..
T Consensus 620 ---~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n------~~Lnp~v~~I~k~f~~vI~~Kh 675 (926)
T COG5116 620 ---KVATDILEALMYDTNDFVRQSAMIAVGMILMQCN------PELNPNVKRIIKKFNRVIVDKH 675 (926)
T ss_pred ---HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcC------cccChhHHHHHHHHHHHHhhhh
Confidence 2233334444446 67899999999998887654 4589999999999998887554
No 229
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.90 E-value=10 Score=44.57 Aligned_cols=230 Identities=15% Similarity=0.213 Sum_probs=127.3
Q ss_pred ChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccch--hhHhHHHHHHHhc
Q 006253 105 AHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQ--DHVNKILTAVVQG 182 (653)
Q Consensus 105 ~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~--~~~~~l~~~l~~~ 182 (653)
+.+||-.+..|++. ... .-|..++..+-...++.+....+.+...+..+........+.+ ..+.+.++.+...
T Consensus 1050 s~~Irelv~rC~~~--nik---SGWk~if~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~~~~sf~d~v~cl~~F 1124 (1514)
T KOG0929|consen 1050 SAEIRELVVRCISS--NIK---SGWKNIFKIFTTAASDSSKNIVELAFETVSKILQELFENVFPQEMDSFKDCVKCLEEF 1124 (1514)
T ss_pred cchhHHHHHhhhhh--hhh---hhhhHHHHHHHHhhccchhhHHHHhHHHHHHHHHHhhhhhchhhhHHHHHHHHHHHHH
Confidence 46788888888882 222 4699999999998888888888888888886655542333422 2344555555444
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHhhhhh-----cC------ChhHHHHHHHHH---HhhhcCCcHHHHHHHHHHHHHHHH
Q 006253 183 MNASESNNDVRLAATRALYNALGFAQAN-----FS------NDMERDYIMRVV---CEATLSPEVKIRQAAFECLVAISS 248 (653)
Q Consensus 183 l~~~~~~~~vr~~a~~~l~~~~~~~~~~-----~~------~~~~~~~il~~l---~~~~~~~~~~~~~~~~~~l~~l~~ 248 (653)
..+ ...+.....++..+..++....+. +. ...+...++|.+ .....+...++|+.+++.+-.+..
T Consensus 1125 ~~~-~~~~~~s~~aI~~lr~ca~k~~e~~~~~~~~~~~~~~~~~~~~~wfP~l~~ls~i~~~~~~~vr~~al~vlF~il~ 1203 (1514)
T KOG0929|consen 1125 TKN-LGFPDDSLNAIRFLRLCALKLAEGVYNEKLKVGKDSEFDVWNSGWFPMLFQLSKIINDYRLEVRKRALEVLFDILK 1203 (1514)
T ss_pred HHh-cCCCccchHHHHHHHHHHHHhccccchhhcccccccccccceeeeehhHhhhhHHhhccHHHHHHHHHHHHHHHHH
Confidence 332 111222222333333333322211 11 011111234444 334446788999999999999999
Q ss_pred HhHHhhHH-hHHHHHHHHHHHhhc----CChhHH-----HHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhh
Q 006253 249 TYYEKLAP-YIQDIFNITAKAVRE----DEEPVA-----LQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHAL 318 (653)
Q Consensus 249 ~~~~~~~~-~l~~l~~~~~~~~~~----~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 318 (653)
.+++.|.+ +.+.++..++..+.. .+...+ ..+...+..+++--. ..+.-+..++
T Consensus 1204 ~~g~~F~~~~We~v~~~~fpIF~~~~~~~~~~~~~eW~~tT~~~Al~~~v~lf~----------------~~~~~l~~lL 1267 (1514)
T KOG0929|consen 1204 EHGDDFSKEFWEDVFRILFPIFDNVKLDEDESEKDEWLSTTCNHALQALVDLFT----------------QFFKQLNNLL 1267 (1514)
T ss_pred hhhhhccHHHHHHHHHheeecccccCcccchhhhhHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHH
Confidence 99887765 455677766665542 111111 111111112222110 1222344556
Q ss_pred hhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCCch
Q 006253 319 PVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIV 365 (653)
Q Consensus 319 ~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~ 365 (653)
+.++-.+..+++..+ -++...+..||..+....|..+-
T Consensus 1268 ~~~~~ll~~ci~~~n---------~~la~~g~~cl~~l~~~n~~~fs 1305 (1514)
T KOG0929|consen 1268 PKVLGLLVGCIKQDN---------QQLARIGTSCLLQLVSSNGEKFS 1305 (1514)
T ss_pred HHHHHHHHHHhcCcc---------hhhHHhHHHHHHHHHHhcccccC
Confidence 666666666666321 14556788898888887775554
No 230
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=92.72 E-value=0.66 Score=45.63 Aligned_cols=153 Identities=10% Similarity=0.055 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHH-hccccccchhchH-HHHHHHHHHHHHhcccccHHHHHHHH
Q 006253 473 VAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLT-VTHREDAGESRLR-TAAYETLNEVVRCSTDETAPMVMQLV 550 (653)
Q Consensus 473 v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~-~l~~~~~~~~~~~-~~~~~~l~~l~~~~~~~~~~~~~~l~ 550 (653)
++......+..+++...+ .......+++.|+. ++.+.....+..| ..++.+++.++...++.+.+++..++
T Consensus 43 iKkeIL~Li~t~i~~~~~-------~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~ 115 (319)
T PF08767_consen 43 IKKEILKLIETFISKAED-------PEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQIL 115 (319)
T ss_dssp HHHHHHHHHHHHHHT-S--------HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHH
T ss_pred HHHHHHHHHHHHHhccCC-------HHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 445555666666665322 22233344444433 2222111011222 36889999999999988778888877
Q ss_pred HHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHhHHHHHHHHhCCCcchhhHh-hHhHHHHHHHHHHHHhccCcchhhhHH
Q 006253 551 PLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVF-MQYADQMMGLFLRVFAIRSATAHEEAM 629 (653)
Q Consensus 551 ~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~-~~~~~~i~~~l~~~l~~~~~~~~e~~~ 629 (653)
..+++.....+.. |-...++.|......+.++...+-..- ..+ .+....+++.+++.++..+.++-+.++
T Consensus 116 ~~vf~~Tl~MI~~------d~~~yPe~r~~ff~LL~~i~~~~f~~l---~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L 186 (319)
T PF08767_consen 116 EAVFECTLPMINK------DFEEYPEHRVNFFKLLRAINEHCFPAL---LQLPPEQFKLVIDSIVWGFKHTNREISETGL 186 (319)
T ss_dssp HHHHHHHHHHHSS------TSSSSHHHHHHHHHHHHHHHHHHTHHH---HHS-HHHHHHHHHHHHHHHTSSSHHHHHHHH
T ss_pred HHHHHHHHHHHHh------hhhhChHHHHHHHHHHHHHHHHhHHHH---HcCCHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 7777665555431 111123455556677777777654330 001 125678899999999988888989999
Q ss_pred HHHHHHHHHhcc
Q 006253 630 LAIGALAYATGL 641 (653)
Q Consensus 630 ~~~~~l~~~~~~ 641 (653)
.++..+...+..
T Consensus 187 ~~l~~ll~~~~~ 198 (319)
T PF08767_consen 187 NILLELLNNVSK 198 (319)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 988888776655
No 231
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=92.58 E-value=0.34 Score=37.40 Aligned_cols=57 Identities=9% Similarity=0.195 Sum_probs=46.6
Q ss_pred CccccHhhhHHHHHHHHHhhcCC---CchhchHHHHHhhhcCc--chhhHHHHHHHHHHhhc
Q 006253 340 EGAWNIAMAGGTCLGLVARTVGD---DIVPLVMPFVEENITKQ--EWRQREAATYAFGSILE 396 (653)
Q Consensus 340 ~~~~~~r~~a~~~L~~l~~~~~~---~~~~~l~~~l~~~l~~~--~~~~r~aal~~l~~i~~ 396 (653)
+++|.+|..|++.|..++..++. ..-|.+...+.+.+.|+ ++..+++|+..|..+..
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~ 78 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGP 78 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 45799999999999999999874 35677888888777765 47789999999998853
No 232
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=92.55 E-value=13 Score=37.61 Aligned_cols=282 Identities=12% Similarity=0.089 Sum_probs=147.3
Q ss_pred ChhHHHHHHHHHHHHHhhhc-ccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHH
Q 006253 144 PPHTKQATLETLGYICEEVS-SDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMR 222 (653)
Q Consensus 144 ~~~~~~~~l~~l~~l~~~~~-~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~ 222 (653)
+......|+++++.+..+.. ...++.+...-++......+.++..+..+...++.++..- -++..+........++.
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q--~f~~~~~~~~~~~~l~~ 136 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQ--KFSPKIMTSDRVERLLA 136 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC--CCCCcccchhhHHHHHH
Confidence 44566788999988876531 1122223333455566666654345556666666666541 11111111111234555
Q ss_pred HHHhhhc-CCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCC
Q 006253 223 VVCEATL-SPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGD 301 (653)
Q Consensus 223 ~l~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 301 (653)
.+....+ -+...+-.+.+.++..++..+|..+..+...=+|.++..+-+...++|..|..+.....-.-
T Consensus 137 ~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l---------- 206 (372)
T PF12231_consen 137 ALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCL---------- 206 (372)
T ss_pred HHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHh----------
Confidence 5554443 35667778889999999999998888777766777777766767777777665433322110
Q ss_pred CCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcch
Q 006253 302 FSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEW 381 (653)
Q Consensus 302 ~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~ 381 (653)
.. ...+.+.+. ..+...- + ++.+...+.+.+..++.+.+
T Consensus 207 ----------~~-~~~~s~~~~---~~~~~~~------~--------------------~~~~~~~~~~~L~~mi~~~~- 245 (372)
T PF12231_consen 207 ----------GP-NKELSKSVL---EDLQRSL------E--------------------NGKLIQLYCERLKEMIKSKD- 245 (372)
T ss_pred ----------Ch-hHHHHHHHH---HHhcccc------c--------------------cccHHHHHHHHHHHHHhCcC-
Confidence 00 000000011 1110000 0 01222333344444444411
Q ss_pred hhHHHHHHHHHH---hhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHH
Q 006253 382 RQREAATYAFGS---ILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQ 458 (653)
Q Consensus 382 ~~r~aal~~l~~---i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 458 (653)
..+. +....+. +. +.....-.+++...+.....++ +++++.+|..|..+-..+........ ......+..
T Consensus 246 ~~~~-a~~iW~~~i~LL-~~~~~~~w~~~n~wL~v~e~cF-n~~d~~~k~~A~~aW~~liy~~~~~~----~~~~k~l~l 318 (372)
T PF12231_consen 246 EYKL-AMQIWSVVILLL-GSSRLDSWEHLNEWLKVPEKCF-NSSDPQVKIQAFKAWRRLIYASNPNE----LTSPKRLKL 318 (372)
T ss_pred Ccch-HHHHHHHHHHHh-CCchhhccHhHhHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhcCCc----cccHHHHHH
Confidence 0011 1111111 11 1111233467888888888999 99999999999999999888554321 123344555
Q ss_pred HHHHHHHhccc--hh----hHHHHHHHHHHHHH
Q 006253 459 IISVLLQSMKD--VP----NVAEKACGALYFLA 485 (653)
Q Consensus 459 il~~l~~~l~d--~~----~v~~~a~~al~~~~ 485 (653)
++..+...+.. .. .++..+...+++++
T Consensus 319 L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~ll 351 (372)
T PF12231_consen 319 LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLL 351 (372)
T ss_pred HHHHHHHHhCccccccccHHHHHHHHHHHhchH
Confidence 55555555552 22 45666666555554
No 233
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=92.54 E-value=7.8 Score=38.17 Aligned_cols=88 Identities=15% Similarity=0.163 Sum_probs=51.5
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhcc----c-hhhHHHHHHHHHHHH
Q 006253 410 ALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMK----D-VPNVAEKACGALYFL 484 (653)
Q Consensus 410 l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~----d-~~~v~~~a~~al~~~ 484 (653)
.+..+++.+ +.++..++..|+..++.+....... .......+++.++..+. . +..++..|..++..+
T Consensus 106 ~~~~fl~ll-~~~D~~i~~~a~~iLt~Ll~~~~~~-------~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~L 177 (312)
T PF03224_consen 106 PYSPFLKLL-DRNDSFIQLKAAFILTSLLSQGPKR-------SEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNL 177 (312)
T ss_dssp -HHHHHHH--S-SSHHHHHHHHHHHHHHHTSTTT---------HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHH
T ss_pred hHHHHHHHh-cCCCHHHHHHHHHHHHHHHHcCCcc-------ccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHH
Confidence 345566677 8889999999999999998876531 22211344454444443 2 356778888899988
Q ss_pred HhcccCCCCCCCCCchhH--HHHHHHHHHhc
Q 006253 485 AQGFEDAISPSSPLTPFF--QEIVQALLTVT 513 (653)
Q Consensus 485 ~~~~~~~~~~~~~l~~~l--~~i~~~L~~~l 513 (653)
+.. ......+ ...++.+..++
T Consensus 178 L~~--------~~~R~~f~~~~~v~~l~~iL 200 (312)
T PF03224_consen 178 LRS--------KEYRQVFWKSNGVSPLFDIL 200 (312)
T ss_dssp HTS--------HHHHHHHHTHHHHHHHHHHH
T ss_pred hCc--------chhHHHHHhcCcHHHHHHHH
Confidence 864 1122222 56666666666
No 234
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=92.47 E-value=0.58 Score=37.65 Aligned_cols=70 Identities=19% Similarity=0.257 Sum_probs=48.9
Q ss_pred hHHHHHHHhh-cCCChhHHHHHHHHHHHHHhhhcccccchhhHh--HHHHHHHhcccCCCCCHHHHHHHHHHHHHHHH
Q 006253 131 ELIGALLSNI-HQLPPHTKQATLETLGYICEEVSSDAVEQDHVN--KILTAVVQGMNASESNNDVRLAATRALYNALG 205 (653)
Q Consensus 131 ~l~~~l~~~l-~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~--~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~ 205 (653)
+++..|.+.+ .+.++.+..-|+.=++.+++.. |.. +..+. ..-..+.+.++ +++++||..|+.|+..++.
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~-p~g--r~ii~~lg~K~~vM~Lm~--h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHY-PNG--RNIIEKLGAKERVMELMN--HEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH--GGG--HHHHHHHSHHHHHHHHTS---SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHC-hhH--HHHHHhcChHHHHHHHhc--CCCHHHHHHHHHHHHHHHH
Confidence 6777777777 3446777777888888888887 542 22222 23445677888 7899999999999998764
No 235
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=92.14 E-value=10 Score=35.44 Aligned_cols=194 Identities=16% Similarity=0.196 Sum_probs=105.6
Q ss_pred cCCChHHHHHHHHHHHHHHhhC---cchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhccCCChHH
Q 006253 13 QSVDGTVRKQAEESLKQYQEQN---LPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSV 89 (653)
Q Consensus 13 ~s~d~~~r~~A~~~L~~~~~~~---~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~ 89 (653)
...+++.....-+.|-++...+ .+-++..+...... .....+..+..++-...+..+ ..| +..
T Consensus 11 ~~~~~~~~~~~L~~L~~l~~~~~~~~~~v~~~L~~L~~~--~~~~~~~~~~rLl~~lw~~~~--------r~f----~~L 76 (234)
T PF12530_consen 11 KISDPELQLPLLEALPSLACHKNVCVPPVLQTLVSLVEQ--GSLELRYVALRLLTLLWKAND--------RHF----PFL 76 (234)
T ss_pred CCCChHHHHHHHHHHHHHhccCccchhHHHHHHHHHHcC--CchhHHHHHHHHHHHHHHhCc--------hHH----HHH
Confidence 3357778888888887776653 12333333333332 233444455555554443321 111 222
Q ss_pred HHHHHHHHHHhc---CCC--ChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhh-cCCChhHHHHHHHHHHHHHhhhc
Q 006253 90 KAQIKSFILKTL---SSP--AHDARSTASQVVAKVAGIELPHKQWPELIGALLSNI-HQLPPHTKQATLETLGYICEEVS 163 (653)
Q Consensus 90 ~~~i~~~ll~~l---~~~--~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l-~~~~~~~~~~~l~~l~~l~~~~~ 163 (653)
+..+....++.. .+. .....-..+..+..++... |+ .|+++++.+.+.+ ++.++..+..+++.+..+|+.-
T Consensus 77 ~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~-p~-~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~- 153 (234)
T PF12530_consen 77 QPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSR-PD-HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAE- 153 (234)
T ss_pred HHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhC-hh-hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh-
Confidence 222222222322 112 2456666677888888877 64 9999999999999 7888899999999999998642
Q ss_pred ccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhh-hcC---ChhHHHHHHHHHHhhhcCCcH
Q 006253 164 SDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQA-NFS---NDMERDYIMRVVCEATLSPEV 233 (653)
Q Consensus 164 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~-~~~---~~~~~~~il~~l~~~~~~~~~ 233 (653)
.+ .+...+..+...++. +..+.+-+. +.+++...+. ..+ .+.....++..+-.+....+.
T Consensus 154 --vv---d~~s~w~vl~~~l~~-~~rp~v~~~----l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~ 217 (234)
T PF12530_consen 154 --VV---DFYSAWKVLQKKLSL-DYRPLVLKS----LCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDV 217 (234)
T ss_pred --hc---cHHHHHHHHHHhcCC-ccchHHHHH----HHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccccc
Confidence 22 123333344444443 555665443 3333333221 111 122335567777666655443
No 236
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=91.58 E-value=14 Score=36.76 Aligned_cols=90 Identities=11% Similarity=0.168 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHhHHHHHHHHhCCCcchhhHhh
Q 006253 524 RTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFM 603 (653)
Q Consensus 524 ~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~ 603 (653)
....+..+..|+..-.-...||+..++|.++..+-...-.. .++. +....+|..+-.+++.+++.++.. ..
T Consensus 234 L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~--~~~~-~~h~~LRd~AA~ll~~i~~~f~~~------y~ 304 (343)
T cd08050 234 LIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCS--RPPD-DNHWALRDYAARLLAQICRKFSTS------YN 304 (343)
T ss_pred HHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcC--CCCC-chHHHHHHHHHHHHHHHHHHcCCC------CC
Confidence 34566666666665555678999999999988764321110 1111 123579999999999999999988 66
Q ss_pred HhHHHHHHHHHHHHhccCc
Q 006253 604 QYADQMMGLFLRVFAIRSA 622 (653)
Q Consensus 604 ~~~~~i~~~l~~~l~~~~~ 622 (653)
...++++..+.+.+-+...
T Consensus 305 ~l~~ri~~tl~k~l~d~~~ 323 (343)
T cd08050 305 TLQPRITRTLLKALLDPKK 323 (343)
T ss_pred cHHHHHHHHHHHHHcCCCC
Confidence 6788899888888886543
No 237
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=91.32 E-value=0.44 Score=41.22 Aligned_cols=78 Identities=15% Similarity=0.161 Sum_probs=59.1
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHH
Q 006253 187 ESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITA 266 (653)
Q Consensus 187 ~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~ 266 (653)
|..-++|++|.+|++.++........ ...+++.+...+.| +.+++.-++..+.+++...|..+...+..+++.+-
T Consensus 38 DDGLelRK~ayE~lytlLd~~~~~~~----~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~ 112 (169)
T PF08623_consen 38 DDGLELRKAAYECLYTLLDTCLSRID----ISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLR 112 (169)
T ss_dssp EGGGHHHHHHHHHHHHHHHSTCSSS-----HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhCC----HHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 45679999999999999885543322 35678888888877 89999999999999999999888877777666655
Q ss_pred HHh
Q 006253 267 KAV 269 (653)
Q Consensus 267 ~~~ 269 (653)
..+
T Consensus 113 ~~L 115 (169)
T PF08623_consen 113 KTL 115 (169)
T ss_dssp HHH
T ss_pred HHh
Confidence 544
No 238
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=91.26 E-value=2.5 Score=32.10 Aligned_cols=68 Identities=18% Similarity=0.320 Sum_probs=54.3
Q ss_pred HHHHHHHHHhhh-cCCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhH
Q 006253 217 RDYIMRVVCEAT-LSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFW 284 (653)
Q Consensus 217 ~~~il~~l~~~~-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~ 284 (653)
...++.-+..++ ...+.++|..+++|+..++...++.++.-.+.++..+-....+.++++...|++.+
T Consensus 15 Q~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~ 83 (86)
T PF09324_consen 15 QKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIV 83 (86)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 345555555553 45789999999999999999999988888888998888888888888888777653
No 239
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=91.01 E-value=9.5 Score=34.19 Aligned_cols=72 Identities=18% Similarity=0.119 Sum_probs=60.5
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhccccc
Q 006253 93 IKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAV 167 (653)
Q Consensus 93 i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~ 167 (653)
..+.+++...+++..+|..+..++..+.+.-+- .-...+|.++....|+++.+|..|...+..+.+.. +..+
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLv--nP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~-~s~v 80 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLV--NPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKH-ESLV 80 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCC--ChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHh-HHHH
Confidence 345677788889999999999999999987543 22478999999999999999999999999998887 5555
No 240
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=90.67 E-value=17 Score=35.30 Aligned_cols=164 Identities=8% Similarity=0.098 Sum_probs=106.2
Q ss_pred hHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccC
Q 006253 106 HDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNA 185 (653)
Q Consensus 106 ~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~ 185 (653)
+.-|+-.+.+-..+...+.. ..|.+++..|.... .+|.. .......+ ++-..+-..+.++++.
T Consensus 3 ~k~kky~~~v~k~L~~Fe~~-~EWAD~is~L~kL~------------k~lq~--~~~~~~~I--P~k~~v~krLaqCL~P 65 (307)
T PF04118_consen 3 SKYKKYNAEVEKALKSFESS-SEWADYISFLGKLL------------KALQN--SNNQFPYI--PHKLQVSKRLAQCLNP 65 (307)
T ss_pred HHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHH------------HHHhc--cCCCCcee--CcHHHHHHHHHHhcCC
Confidence 45566666666666666654 58998877765542 12210 01101122 3334455667788874
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhhh-cCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHH
Q 006253 186 SESNNDVRLAATRALYNALGFAQAN-FSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNI 264 (653)
Q Consensus 186 ~~~~~~vr~~a~~~l~~~~~~~~~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~ 264 (653)
.-...|...|+++...+.+.+... +.. +..-+.++++.++......+|...++.+....-.-+..+.+.++.++.-
T Consensus 66 -~LPsGVH~KaLevY~~IF~~ig~~~L~~--dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~s 142 (307)
T PF04118_consen 66 -ALPSGVHQKALEVYEYIFERIGPDGLAQ--DLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILS 142 (307)
T ss_pred -CCChHHHHHHHHHHHHHHHhcCHHHHHh--hcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 445678888999988877654321 111 1245778888888777788888888877776555556677778888888
Q ss_pred HHHHhhcCChhHHHHHHHhHHHhhH
Q 006253 265 TAKAVREDEEPVALQAIEFWSSVCD 289 (653)
Q Consensus 265 ~~~~~~~~~~~~~~~a~~~~~~~~~ 289 (653)
++..+.++..++...++..+..+..
T Consensus 143 lLpGLede~sE~~~~~~~ll~~l~~ 167 (307)
T PF04118_consen 143 LLPGLEDEGSEFFDRTLKLLDKLKE 167 (307)
T ss_pred hccccccCCchHHHHHHHHHHHHHH
Confidence 8888887777787788877777765
No 241
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.58 E-value=42 Score=39.60 Aligned_cols=169 Identities=12% Similarity=0.111 Sum_probs=95.4
Q ss_pred hhHHHHHHHHHhhc-CCCchhchHHHHHhh-hcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCch
Q 006253 347 MAGGTCLGLVARTV-GDDIVPLVMPFVEEN-ITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNN 424 (653)
Q Consensus 347 ~~a~~~L~~l~~~~-~~~~~~~l~~~l~~~-l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~ 424 (653)
..|..|.+.++... +....+.++..+... ..+.+|++|.+++..+....-....-......+.+-..+...+ .|...
T Consensus 1505 ~~a~~~~~lm~~~~~~~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l-~D~~i 1583 (1710)
T KOG1851|consen 1505 NSALLCHSLMSLSWIGHHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLL-NDDQI 1583 (1710)
T ss_pred HHHHHHHHHHHhhccchhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHH-cchHH
Confidence 34555555555443 556677777777643 3456799999998887765432110122344567777788888 99988
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc--hhhH-HHHHHHHHHHHHhcccCCCCCCCCCchh
Q 006253 425 HVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD--VPNV-AEKACGALYFLAQGFEDAISPSSPLTPF 501 (653)
Q Consensus 425 ~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d--~~~v-~~~a~~al~~~~~~~~~~~~~~~~l~~~ 501 (653)
.||..|..+|.-+...-.. ...+............ ...+ .-.|.-+++.++-.+ +-.+..+
T Consensus 1584 ~vre~Aa~~Lsgl~~~s~~----------~~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~Vlaf------Py~vP~w 1647 (1710)
T KOG1851|consen 1584 EVREEAAKCLSGLLQGSKF----------QFVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAF------PYVVPLW 1647 (1710)
T ss_pred HHHHHHHHHHHHHHhcccc----------ccchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhc------cccchhh
Confidence 9999999999888764431 1111222222222221 2233 345667788887654 3334445
Q ss_pred HHHHHHHHHHhccccccchhchHHHHHHHHHHHHH
Q 006253 502 FQEIVQALLTVTHREDAGESRLRTAAYETLNEVVR 536 (653)
Q Consensus 502 l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~ 536 (653)
++..+..+....++++ .++..+-++++.+-+
T Consensus 1648 ip~~L~~Ls~fa~e~~----~i~~tvkktvseFrr 1678 (1710)
T KOG1851|consen 1648 IPKPLMNLSSFARESA----AIKQTVKKTVSEFRR 1678 (1710)
T ss_pred hHHHHHHHHhhcCCch----HHHHHHHHHHHHHHH
Confidence 5555554444444332 344445555555433
No 242
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=90.55 E-value=29 Score=37.64 Aligned_cols=109 Identities=17% Similarity=0.197 Sum_probs=67.8
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhHhHH--HHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhh--
Q 006253 134 GALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKI--LTAVVQGMNASESNNDVRLAATRALYNALGFAQA-- 209 (653)
Q Consensus 134 ~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l--~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~-- 209 (653)
|..++.+.+.++.++-.|..-+..+|..- .+ + +..+.++ ++.++..+. ..+.+|+..|+.+|.+++- .+.
T Consensus 236 pe~i~mL~~q~~~~qsnaaaylQHlcfgd-~~-i-k~~vrqlggI~kLv~Ll~--~~~~evq~~acgaLRNLvf-~~~~~ 309 (717)
T KOG1048|consen 236 PEVISMLMSQDPSVQSNAAAYLQHLCFGD-NK-I-KSRVRQLGGIPKLVALLD--HRNDEVQRQACGALRNLVF-GKSTD 309 (717)
T ss_pred HHHHHHHhccChhhhHHHHHHHHHHHhhh-HH-H-HHHHHHhccHHHHHHHhc--CCcHHHHHHHHHHHHhhhc-ccCCc
Confidence 66677777888888777777777777654 11 2 2233333 667778888 7889999999999999762 211
Q ss_pred -hcCChhHHHHHHHHHHhhhc-CCcHHHHHHHHHHHHHHHHH
Q 006253 210 -NFSNDMERDYIMRVVCEATL-SPEVKIRQAAFECLVAISST 249 (653)
Q Consensus 210 -~~~~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~l~~l~~~ 249 (653)
+.......+. ++.+...+. ..|.++++.+.-.|..+.+.
T Consensus 310 ~NKlai~~~~G-v~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~ 350 (717)
T KOG1048|consen 310 SNKLAIKELNG-VPTLVRLLRHTQDDEVRELITGILWNLSSN 350 (717)
T ss_pred ccchhhhhcCC-hHHHHHHHHhhcchHHHHHHHHHHhcccch
Confidence 1110011112 233333443 36788888888777776665
No 243
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.39 E-value=1.1 Score=39.53 Aligned_cols=94 Identities=12% Similarity=0.175 Sum_probs=69.0
Q ss_pred hHHHHHHHHHhccc-hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHH
Q 006253 456 CQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEV 534 (653)
Q Consensus 456 ~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l 534 (653)
+...++.+..+|.+ +...+--|-..+..++... ++.+.|.++.++..|-..+...+ .++...++.+|..+
T Consensus 112 y~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~------g~kilpVLPqLI~plK~al~trd---~ev~~~~Lkvlq~l 182 (262)
T KOG3961|consen 112 YCPYLPLFFDGLAETDHPYRFVARQGITDLLLAG------GEKILPVLPQLILPLKAALVTRD---DEVICRTLKVLQQL 182 (262)
T ss_pred chHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhc------ccccccccHHHHHHHHHHHhhcc---HHHHHHHHHHHHHH
Confidence 45677888888875 4344445555566666543 47799999999999999998775 56667788888887
Q ss_pred HHhc---ccccHHHHHHHHHHHHHHHHH
Q 006253 535 VRCS---TDETAPMVMQLVPLIMMELHQ 559 (653)
Q Consensus 535 ~~~~---~~~~~~~~~~l~~~l~~~l~~ 559 (653)
.... |...+||+.+++|.+ +.+++
T Consensus 183 v~~~~~vG~aLVPfYRQlLp~~-n~~k~ 209 (262)
T KOG3961|consen 183 VVSVGCVGAALVPFYRQLLPVL-NTFKN 209 (262)
T ss_pred HHhccccchhhhhHHHHhhhhh-hhhcc
Confidence 7654 467899999999986 55544
No 244
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.24 E-value=50 Score=39.89 Aligned_cols=237 Identities=16% Similarity=0.133 Sum_probs=124.1
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHhh-CcchHHHHHHH----HHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHh
Q 006253 4 EVTQILLNAQSVDGTVRKQAEESLKQYQEQ-NLPGFLLSLAG----ELVNDEKPVESRKLAGLILKNALDAKEQHRKFEL 78 (653)
Q Consensus 4 ~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~-~~~~~~~~l~~----il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~ 78 (653)
.+..+.+.+.++++..|-.+.+.+.++..- +.+-|+..+.+ -+.+ ..|+..|..-...++...++..
T Consensus 877 ~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas-~~d~i~R~ghslalg~lhkyvg------- 948 (2067)
T KOG1822|consen 877 ALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLAS-ARDPITRTGHSLALGCLHKYVG------- 948 (2067)
T ss_pred HHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHhcc-------
Confidence 355667777888999998888888766443 22445554444 3443 4566666655555555444321
Q ss_pred hhhccCCChHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHhhhcCCCCCchHHHH---HHHhh-cCCC--hhHHHHH
Q 006253 79 VQRWLSLDSSVKAQIKSFILKTLSSPA-HDARSTASQVVAKVAGIELPHKQWPELIGA---LLSNI-HQLP--PHTKQAT 151 (653)
Q Consensus 79 ~~~~~~l~~~~~~~i~~~ll~~l~~~~-~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~---l~~~l-~~~~--~~~~~~~ 151 (653)
...+.+....=...++-...++. +.|+.-.-.+++.++..-.|- .|--.-+. +...+ +.+. .+++..-
T Consensus 949 ----s~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~-~~~~ve~tlsl~~~lLls~p~~~~ev~q~~ 1023 (2067)
T KOG1822|consen 949 ----SIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPM-FRVLVEPTLSLCLKLLLSVPTSHVEVHQCY 1023 (2067)
T ss_pred ----CCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCce-ehhhHHHHHHHHHHHcCCCCcchhhhhhhh
Confidence 11222222222233444445554 588888888888887655452 44221121 12222 2221 1222222
Q ss_pred HHHHH------HHHhhhccccc---chhhHhHHHHHHH--hcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHH
Q 006253 152 LETLG------YICEEVSSDAV---EQDHVNKILTAVV--QGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYI 220 (653)
Q Consensus 152 l~~l~------~l~~~~~~~~~---~~~~~~~l~~~l~--~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~i 220 (653)
-+++. .+.....|+.= +......+-...+ .++.-+.+++-+..++++|+.++-.|.+.... .+.+
T Consensus 1024 ~R~~~~~~~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n----~~~l 1099 (2067)
T KOG1822|consen 1024 NRCFNGDDDEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVN----LDSL 1099 (2067)
T ss_pred ccccccchhHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhcc----HHHH
Confidence 22222 33333322210 0111122211111 12221146778889999999998777654332 2567
Q ss_pred HHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHh
Q 006253 221 MRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPY 257 (653)
Q Consensus 221 l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 257 (653)
+..++..+...-.-.|...+.|+..++....+.+..|
T Consensus 1100 V~~L~~~l~s~~~i~r~~~~~clrql~~Re~sev~e~ 1136 (2067)
T KOG1822|consen 1100 VLQLCSLLSSSYLILRRASFSCLRQLVQREASEVCEY 1136 (2067)
T ss_pred HHHHHHHhcchhhhhhhhHHhhhhHHhHHHHHHHHHH
Confidence 7777776665555677888888888887665544443
No 245
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=90.05 E-value=16 Score=33.98 Aligned_cols=119 Identities=18% Similarity=0.259 Sum_probs=73.7
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 006253 40 LSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKV 119 (653)
Q Consensus 40 ~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~i 119 (653)
..+.+++.+.+.+.+-|.-|...|++..... ..+.+.+...+++...++.++.+++..
T Consensus 6 ~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~~----------------------~i~~i~ka~~d~s~llkhe~ay~LgQ~ 63 (289)
T KOG0567|consen 6 ETIGNILVNKSQPLQNRFRALFNLRNLLGPA----------------------AIKAITKAFIDDSALLKHELAYVLGQM 63 (289)
T ss_pred HHHHHHHcCccHHHHHHHHHHHhhhccCChH----------------------HHHHHHHhcccchhhhccchhhhhhhh
Confidence 3455777776778888888888888866421 134556666666667777777777655
Q ss_pred HhhhcCCCCCchHHHHHHHhhcCC--ChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHH
Q 006253 120 AGIELPHKQWPELIGALLSNIHQL--PPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAAT 197 (653)
Q Consensus 120 a~~~~~~~~~~~l~~~l~~~l~~~--~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~ 197 (653)
.. .+-+|.+...+.+. .|.+|..+..+|+.+.. +. ..+.+.+..+ |+-.+|+....
T Consensus 64 ~~--------~~Av~~l~~vl~desq~pmvRhEAaealga~~~---~~---------~~~~l~k~~~--dp~~~v~ETc~ 121 (289)
T KOG0567|consen 64 QD--------EDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD---PE---------SLEILTKYIK--DPCKEVRETCE 121 (289)
T ss_pred cc--------chhhHHHHHHhcccccchHHHHHHHHHHHhhcc---hh---------hHHHHHHHhc--CCccccchHHH
Confidence 32 34556666666554 57788888888876541 22 2222233333 67677776644
Q ss_pred HHHHH
Q 006253 198 RALYN 202 (653)
Q Consensus 198 ~~l~~ 202 (653)
.++..
T Consensus 122 lAi~r 126 (289)
T KOG0567|consen 122 LAIKR 126 (289)
T ss_pred HHHHH
Confidence 44443
No 246
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=90.03 E-value=34 Score=37.63 Aligned_cols=132 Identities=14% Similarity=0.136 Sum_probs=74.8
Q ss_pred HHHHHHHhcCC----CChHHHHHHHHHHHHHHhhhcCC------------CCCchHHHHHHHhhc----CCChhHHHHHH
Q 006253 93 IKSFILKTLSS----PAHDARSTASQVVAKVAGIELPH------------KQWPELIGALLSNIH----QLPPHTKQATL 152 (653)
Q Consensus 93 i~~~ll~~l~~----~~~~vr~~~~~~l~~ia~~~~~~------------~~~~~l~~~l~~~l~----~~~~~~~~~~l 152 (653)
+.+.++..+.+ .++.++..+..+++.++...... ..-..+++.+...+. ..+...+..++
T Consensus 432 ~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~L 511 (618)
T PF01347_consen 432 LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYL 511 (618)
T ss_dssp HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHH
Confidence 34445555554 34689999999999998754221 112344555554443 45667778888
Q ss_pred HHHHHHHhhhcccccchhhHhHHHHHHHhcccCC-CCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhc--
Q 006253 153 ETLGYICEEVSSDAVEQDHVNKILTAVVQGMNAS-ESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATL-- 229 (653)
Q Consensus 153 ~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~-- 229 (653)
.+|+.+- ....++.+...+... +.+..+|.+|+.+|..+....+ +.+.+.+..+..
T Consensus 512 kaLgN~g------------~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~---------~~v~~~l~~I~~n~ 570 (618)
T PF01347_consen 512 KALGNLG------------HPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP---------EKVREILLPIFMNT 570 (618)
T ss_dssp HHHHHHT-------------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H---------HHHHHHHHHHHH-T
T ss_pred HHhhccC------------CchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc---------HHHHHHHHHHhcCC
Confidence 8887531 122444555555532 3477899999999987543322 234445554443
Q ss_pred CCcHHHHHHHHHHHHH
Q 006253 230 SPEVKIRQAAFECLVA 245 (653)
Q Consensus 230 ~~~~~~~~~~~~~l~~ 245 (653)
..+.++|.+++..|..
T Consensus 571 ~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 571 TEDPEVRIAAYLILMR 586 (618)
T ss_dssp TS-HHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHh
Confidence 2577899888766554
No 247
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=89.82 E-value=22 Score=35.16 Aligned_cols=201 Identities=13% Similarity=0.113 Sum_probs=116.0
Q ss_pred hHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 006253 37 GFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVV 116 (653)
Q Consensus 37 ~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l 116 (653)
+.+..|+..+. ..+-+.|.-++.++.+.+++....+.. +...| -...+..+...|+.+-.+++ +--.++..+
T Consensus 76 dll~~Li~~L~--~L~fEsrKdv~~if~~llr~~~~~~~~-p~v~y---l~~~~peil~~L~~gy~~~d--ial~~g~ml 147 (335)
T PF08569_consen 76 DLLYLLIRNLP--KLDFESRKDVAQIFSNLLRRQIGSRSP-PTVDY---LERHRPEILDILLRGYENPD--IALNCGDML 147 (335)
T ss_dssp THHHHHHHTGG--GS-HHHHHHHHHHHHHHHT--BTTB---HHHHH---HHT--THHHHHHHHGGGSTT--THHHHHHHH
T ss_pred CHHHHHHHHhh--hCCCcccccHHHHHHHHHhhccCCCCC-chHHH---HHhCCHHHHHHHHHHhcCcc--ccchHHHHH
Confidence 44444444444 457889998888888888764321100 00000 01122455666666666554 334445555
Q ss_pred HHHHhhhcCC--CCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhc---ccccchhhHhHHHHHHHhcccCCCCCHH
Q 006253 117 AKVAGIELPH--KQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVS---SDAVEQDHVNKILTAVVQGMNASESNND 191 (653)
Q Consensus 117 ~~ia~~~~~~--~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~---~~~~~~~~~~~l~~~l~~~l~~~~~~~~ 191 (653)
...++++.-. --+++.+..+++.++.++-++---|+..+..+...-. .+.+ ..+.+..+..+.+.+. .++.-
T Consensus 148 Rec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl-~~n~d~ff~~~~~Ll~--s~NYv 224 (335)
T PF08569_consen 148 RECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFL-SNNYDRFFQKYNKLLE--SSNYV 224 (335)
T ss_dssp HHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHH-HHTHHHHHHHHHHHCT---SSHH
T ss_pred HHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHH-HHHHHHHHHHHHHHcc--CCCeE
Confidence 5444432000 0123444456777888888887788888887665431 2334 4566777887777887 68999
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCh-hHH--HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q 006253 192 VRLAATRALYNALGFAQANFSND-MER--DYIMRVVCEATLSPEVKIRQAAFECLVAISST 249 (653)
Q Consensus 192 vr~~a~~~l~~~~~~~~~~~~~~-~~~--~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~ 249 (653)
+|..+++.|+.++.- +.++... .+. ..-+..+..++++++..++-.++..+.-++.+
T Consensus 225 tkrqslkLL~ellld-r~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 225 TKRQSLKLLGELLLD-RSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHHHHHHHHHS-GGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred eehhhHHHHHHHHHc-hhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 999999999998741 1111000 011 34677778888889999999999988887775
No 248
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=89.59 E-value=5.7 Score=35.59 Aligned_cols=79 Identities=23% Similarity=0.250 Sum_probs=60.2
Q ss_pred hhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q 006253 169 QDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISS 248 (653)
Q Consensus 169 ~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~ 248 (653)
+.+.+.++.... +++..+|..|++.+..++.. .+.++ ...+|.+..+..++++.++..+...+..+.+
T Consensus 7 Qryl~~Il~~~~------~~~~~vr~~Al~~l~~il~q---GLvnP---~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~e 74 (187)
T PF12830_consen 7 QRYLKNILELCL------SSDDSVRLAALQVLELILRQ---GLVNP---KQCVPTLIALETSPNPSIRSRAYQLLKELHE 74 (187)
T ss_pred HHHHHHHHHHHh------CCCHHHHHHHHHHHHHHHhc---CCCCh---HHHHhHhhhhhCCCChHHHHHHHHHHHHHHH
Confidence 344455554333 68899999999999987653 22222 5689999999999999999999999999999
Q ss_pred HhHHhhHHhHH
Q 006253 249 TYYEKLAPYIQ 259 (653)
Q Consensus 249 ~~~~~~~~~l~ 259 (653)
+++..+.....
T Consensus 75 K~~s~v~~~~~ 85 (187)
T PF12830_consen 75 KHESLVESRYS 85 (187)
T ss_pred HhHHHHHHHHH
Confidence 99887665443
No 249
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.51 E-value=48 Score=38.63 Aligned_cols=152 Identities=13% Similarity=0.194 Sum_probs=95.7
Q ss_pred CCChHHHHHHHHHHHHHHhhhcCC--CCCchHHHHHHHhhcCC---ChhHHHHHHHHHHHHHhhhcccccchhhHhHHHH
Q 006253 103 SPAHDARSTASQVVAKVAGIELPH--KQWPELIGALLSNIHQL---PPHTKQATLETLGYICEEVSSDAVEQDHVNKILT 177 (653)
Q Consensus 103 ~~~~~vr~~~~~~l~~ia~~~~~~--~~~~~l~~~l~~~l~~~---~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~ 177 (653)
.+-.++|...-.++..|.+..+.. ..|+.+++.+-...... ...+.+.+..+|.-++..+ -+.+.......++.
T Consensus 853 ~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDf-LqSLp~sci~~lid 931 (1610)
T KOG1848|consen 853 SRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDF-LQSLPTSCILDLID 931 (1610)
T ss_pred CccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcc-hhcCChHHHHHHHH
Confidence 344566666667887777655321 35999999988766554 3456677888888887766 34343344555666
Q ss_pred HHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhh-cCC------------------------hhHHHHHHHHHHhhhcCCc
Q 006253 178 AVVQGMNASESNNDVRLAATRALYNALGFAQAN-FSN------------------------DMERDYIMRVVCEATLSPE 232 (653)
Q Consensus 178 ~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~-~~~------------------------~~~~~~il~~l~~~~~~~~ 232 (653)
.+...... ..+..+-..|+..+-.+-.|+... +.. +..+-.++..+.....|+.
T Consensus 932 tl~~fs~Q-ktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~dsr 1010 (1610)
T KOG1848|consen 932 TLLVFSRQ-KTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCEDSR 1010 (1610)
T ss_pred HHHHHHhh-hccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhccch
Confidence 65554432 344555555665554444443220 000 0111224556666777889
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhHH
Q 006253 233 VKIRQAAFECLVAISSTYYEKLAP 256 (653)
Q Consensus 233 ~~~~~~~~~~l~~l~~~~~~~~~~ 256 (653)
+++|..+++.|-+++..++..+.+
T Consensus 1011 ~eVRngAvqtlfri~~Shg~~l~~ 1034 (1610)
T KOG1848|consen 1011 AEVRNGAVQTLFRIFNSHGSKLGT 1034 (1610)
T ss_pred HHHhhhHHHHHHHHHhhhcccCCh
Confidence 999999999999999999887776
No 250
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=89.46 E-value=23 Score=34.91 Aligned_cols=169 Identities=12% Similarity=0.117 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHhhhc-ccccchhhHhHHHHHHHhcccCCCCCHHHHH-HHHHHHHHHHHhhhhhcCChhHHHHHHHHH
Q 006253 147 TKQATLETLGYICEEVS-SDAVEQDHVNKILTAVVQGMNASESNNDVRL-AATRALYNALGFAQANFSNDMERDYIMRVV 224 (653)
Q Consensus 147 ~~~~~l~~l~~l~~~~~-~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~-~a~~~l~~~~~~~~~~~~~~~~~~~il~~l 224 (653)
+|...+..+...++..+ ++.+....++.++..++..-+ ...+..|. ..+.++..++.-+.+...+. ...+++.+
T Consensus 43 iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~--~~~p~~r~~evL~l~~~ii~kl~~~~~~~--v~~I~~~v 118 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQ--NSVPDAREPEVLSLMATIINKLGELIQPQ--VPQILEAV 118 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHH--HS-GGGS-HHHHHHHHHHHHHHGGGCCCC--HHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHh--cCCccccChhHHHHHHHHHHHHHHhhhhh--HHHHHHHH
Confidence 56667777777777652 111111223333333333333 12233332 25566666665555443322 23344333
Q ss_pred ----HhhhcC---CcHHHHHHHHHHHHHHHHHhHHhhH----HhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHh
Q 006253 225 ----CEATLS---PEVKIRQAAFECLVAISSTYYEKLA----PYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEID 293 (653)
Q Consensus 225 ----~~~~~~---~~~~~~~~~~~~l~~l~~~~~~~~~----~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 293 (653)
...+.+ +-|+.|...++.+..+.+.+...+. .....++..+.-.+++.+.++...+++.+..+.+....
T Consensus 119 f~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 119 FECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 334432 4689999999999999998765543 23556778888889999999999999988888775432
Q ss_pred hhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhh
Q 006253 294 ILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLL 330 (653)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~ 330 (653)
...+ ....|.+.++-.++..++..+.
T Consensus 199 ~~~~-----------~~~~F~~~y~~~il~~if~vlt 224 (319)
T PF08767_consen 199 TNPE-----------FANQFYQQYYLDILQDIFSVLT 224 (319)
T ss_dssp -SHH-----------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHH-----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 1234566666566666666665
No 251
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=89.12 E-value=29 Score=35.55 Aligned_cols=191 Identities=11% Similarity=0.116 Sum_probs=94.4
Q ss_pred HHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHhhhcCC-------C--CCchHHHHHHHhhcCCChhHHHHHHHHHHHHHh
Q 006253 91 AQIKSFILKTLSSP-AHDARSTASQVVAKVAGIELPH-------K--QWPELIGALLSNIHQLPPHTKQATLETLGYICE 160 (653)
Q Consensus 91 ~~i~~~ll~~l~~~-~~~vr~~~~~~l~~ia~~~~~~-------~--~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~ 160 (653)
......+++++... ...+.+.+...+..+.+.+ |. . .-++....++..+..++.-+...++.++..++.
T Consensus 52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~-~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~ 130 (429)
T cd00256 52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQED-DTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLAC 130 (429)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc-hHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHh
Confidence 34455556665543 2455555555555554432 10 0 002222233335566787888889999988876
Q ss_pred hhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHh--hhhhcCChhHHHHHHHHHHhhhcCC--cHHHH
Q 006253 161 EVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGF--AQANFSNDMERDYIMRVVCEATLSP--EVKIR 236 (653)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~--~~~~~~~~~~~~~il~~l~~~~~~~--~~~~~ 236 (653)
.- +..........+++.+...++++ .+...+..++.|+..++.. ....|-. ...++.+...++.. .....
T Consensus 131 ~~-~~~~~~~~l~~~~~~l~~~l~~~-~~~~~~~~~v~~L~~LL~~~~~R~~f~~----~~~v~~L~~~L~~~~~~~Ql~ 204 (429)
T cd00256 131 FG-LAKMEGSDLDYYFNWLKEQLNNI-TNNDYVQTAARCLQMLLRVDEYRFAFVL----ADGVPTLVKLLSNATLGFQLQ 204 (429)
T ss_pred cC-ccccchhHHHHHHHHHHHHhhcc-CCcchHHHHHHHHHHHhCCchHHHHHHH----ccCHHHHHHHHhhccccHHHH
Confidence 43 33221222334555566666542 3355666677888776531 1111100 11334444444321 22333
Q ss_pred HHHHHHHHHHHHHhHHhhHHhH--HHHHHHHHHHhhc-CChhHHHHHHHhHHHhhHH
Q 006253 237 QAAFECLVAISSTYYEKLAPYI--QDIFNITAKAVRE-DEEPVALQAIEFWSSVCDE 290 (653)
Q Consensus 237 ~~~~~~l~~l~~~~~~~~~~~l--~~l~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~ 290 (653)
=.++-|+.-+ .+.......+ ..+++.+...++. ..+.+...++..+.++.+.
T Consensus 205 Y~~ll~lWlL--SF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~ 259 (429)
T cd00256 205 YQSIFCIWLL--TFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISK 259 (429)
T ss_pred HHHHHHHHHH--hccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Confidence 2333333322 2222222333 3578887777765 4566777777777777753
No 252
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=88.48 E-value=8.8 Score=31.46 Aligned_cols=75 Identities=13% Similarity=0.167 Sum_probs=52.6
Q ss_pred CCchhchHHHHHhhhc-CcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhh
Q 006253 362 DDIVPLVMPFVEENIT-KQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEF 440 (653)
Q Consensus 362 ~~~~~~l~~~l~~~l~-~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~ 440 (653)
+.+++.++|++...+. +.....|-++++.++.++.... --...+..++..+.+.. ..... ...++-++..++..
T Consensus 1 E~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~--L~~~~l~~l~~~i~~~~-~~~~~--~~~~l~~L~~l~q~ 75 (121)
T PF12397_consen 1 EDILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP--LSDEVLNALMESILKNW-TQETV--QRQALICLIVLCQS 75 (121)
T ss_pred CcHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC--CcHHHHHHHHHHHHhcc-ccchh--HHHHHHHHHHHHHc
Confidence 3567889999999998 6667889999999999997542 22345666666666555 33333 46677778877754
Q ss_pred h
Q 006253 441 L 441 (653)
Q Consensus 441 ~ 441 (653)
.
T Consensus 76 q 76 (121)
T PF12397_consen 76 Q 76 (121)
T ss_pred c
Confidence 4
No 253
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=88.20 E-value=0.99 Score=28.51 Aligned_cols=28 Identities=43% Similarity=0.337 Sum_probs=24.7
Q ss_pred HHHHHHHHhccc-hhhHHHHHHHHHHHHH
Q 006253 458 QIISVLLQSMKD-VPNVAEKACGALYFLA 485 (653)
Q Consensus 458 ~il~~l~~~l~d-~~~v~~~a~~al~~~~ 485 (653)
..+|.|++.+.+ ++.++..|+++|.+++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 468889999886 7999999999999986
No 254
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=88.19 E-value=1.1 Score=34.16 Aligned_cols=57 Identities=19% Similarity=0.235 Sum_probs=43.9
Q ss_pred hhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhh
Q 006253 382 RQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFL 441 (653)
Q Consensus 382 ~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~ 441 (653)
..|++++.+|++++... +..+.++++.++..+.... .| ...|+.++-.+++.|-+.-
T Consensus 4 ~~rH~~VLGL~Alv~a~-Py~vP~w~P~~l~~La~~~-~~-~~~I~~tvk~tl~eFkrtH 60 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAF-PYDVPPWMPEVLEELARHA-ND-PQPIRTTVKKTLSEFKRTH 60 (90)
T ss_dssp HHHHHHHHHHHHHHTT--S--SS-HHHHHHHHHHTTS-SS--SSHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHc-CCCCcccHHHHHHHHHHHh-CC-CchHHHHHHHHHHHHHHhC
Confidence 57899999999999986 6888889999998877766 65 6689999999999987643
No 255
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=88.13 E-value=1.9 Score=31.40 Aligned_cols=56 Identities=20% Similarity=0.259 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHhhcCCCCCcchHHHH--HHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhh
Q 006253 383 QREAATYAFGSILEGPSPEKLVPLVN--IALNFMLTALMQDPNNHVKDTTAWTLGRMFEFL 441 (653)
Q Consensus 383 ~r~aal~~l~~i~~~~~~~~~~~~l~--~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~ 441 (653)
...++++++|.++... .. .++++ .+++.+++...+++...+|.+++++||-++...
T Consensus 3 ~lKaaLWaighIgss~--~G-~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~ 60 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSP--LG-IQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTE 60 (73)
T ss_pred HHHHHHHHHHhHhcCh--HH-HHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCH
Confidence 4578999999998752 22 23343 477777777646788899999999999998754
No 256
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=87.78 E-value=39 Score=35.47 Aligned_cols=240 Identities=15% Similarity=0.139 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHHHhhCcchHHH---HHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhccCCChHHHHHHH
Q 006253 18 TVRKQAEESLKQYQEQNLPGFLL---SLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIK 94 (653)
Q Consensus 18 ~~r~~A~~~L~~~~~~~~~~~~~---~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~ 94 (653)
..|-+|-++|.+.-+.-+.+-+. .+..=+.+++.+.+.|+.+..++...+++.. .. + ...|
T Consensus 5 ~~R~~a~~~l~~~i~~~~~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~-----------~~-~----~~~R 68 (464)
T PF11864_consen 5 SERIKAAEELCESIQKYPLSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQD-----------SS-S----GLMR 68 (464)
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccc-----------cc-c----HHHH
Confidence 35666666666433331223233 3334444567889999999999999997532 10 1 2345
Q ss_pred HHHHHhcCCCC-h---HHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcC---------------------------C
Q 006253 95 SFILKTLSSPA-H---DARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQ---------------------------L 143 (653)
Q Consensus 95 ~~ll~~l~~~~-~---~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~---------------------------~ 143 (653)
..+++.+.++. + ..|-.+-.+|..=++.. . ..-.++.+.|...+.. .
T Consensus 69 ~~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi-~-~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 146 (464)
T PF11864_consen 69 AEFFRDISDPSNDDDFDLRLEALIALTDNGRDI-D-FFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDN 146 (464)
T ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHcCCcCc-h-hcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccc
Confidence 56666665432 2 34444444444322221 0 1123444444433311 0
Q ss_pred ChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHH
Q 006253 144 PPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRV 223 (653)
Q Consensus 144 ~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~ 223 (653)
+...-...+..+..+++.- ...++...+..++..++..... ..+++.-..+++.+..++.|.. .+......++..
T Consensus 147 ~~~~l~~ll~~l~nviKfn-~~~l~e~~i~~lv~~i~~iC~~-Ts~~~di~~~L~vldaii~y~~---iP~~sl~~~i~v 221 (464)
T PF11864_consen 147 EESNLSDLLQFLVNVIKFN-FNYLDEDEISSLVDQICTICKS-TSSEDDIEACLSVLDAIITYGD---IPSESLSPCIEV 221 (464)
T ss_pred hhhhHHHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHhc-cCcHHHHHHHHHHHHHHHHcCc---CChHHHHHHHHH
Confidence 1111223334444444432 4445456677777776665443 3334444778888888887642 122233677888
Q ss_pred HHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhc------CChhHHHHHHHhHHHhh
Q 006253 224 VCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVRE------DEEPVALQAIEFWSSVC 288 (653)
Q Consensus 224 l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~------~~~~~~~~a~~~~~~~~ 288 (653)
|+...... +..+.+-+++..++..+.. ...+..+...+.+ .+..+...|+.++..+.
T Consensus 222 LCsi~~~~--~l~~~~w~~m~nL~~S~~g------~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll 284 (464)
T PF11864_consen 222 LCSIVNSV--SLCKPSWRTMRNLLKSHLG------HSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLL 284 (464)
T ss_pred HhhHhccc--ccchhHHHHHHHHHcCccH------HHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHH
Confidence 88775433 5555566666666643211 2233333444421 23344556776666554
No 257
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=87.25 E-value=49 Score=35.99 Aligned_cols=135 Identities=19% Similarity=0.145 Sum_probs=76.9
Q ss_pred HHHHHHHhcCCC----ChHHHHHHHHHHHHHHhhhcC-CCCCc-----hHHHHHHHhhc----CCChhHHHHHHHHHHHH
Q 006253 93 IKSFILKTLSSP----AHDARSTASQVVAKVAGIELP-HKQWP-----ELIGALLSNIH----QLPPHTKQATLETLGYI 158 (653)
Q Consensus 93 i~~~ll~~l~~~----~~~vr~~~~~~l~~ia~~~~~-~~~~~-----~l~~~l~~~l~----~~~~~~~~~~l~~l~~l 158 (653)
+.+.++..+.++ .+.+|..+..+++.++...-. ...++ ++++.+.+.+. ..+...+...+.+|+.+
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~ 473 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA 473 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence 444566666553 468999999999999975322 12343 56666665553 33555566677777642
Q ss_pred HhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHH
Q 006253 159 CEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQA 238 (653)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~ 238 (653)
-. + .....+.+.+. .+...+..+|.+|+.+|..+....+. ..++.+++++.. ...+.++|.+
T Consensus 474 g~---~-----~~i~~l~~~l~---~~~~~~~~iR~~Av~Alr~~a~~~p~-----~v~~~l~~i~~n--~~e~~EvRia 535 (574)
T smart00638 474 GH---P-----SSIKVLEPYLE---GAEPLSTFIRLAAILALRNLAKRDPR-----KVQEVLLPIYLN--RAEPPEVRMA 535 (574)
T ss_pred CC---h-----hHHHHHHHhcC---CCCCCCHHHHHHHHHHHHHHHHhCch-----HHHHHHHHHHcC--CCCChHHHHH
Confidence 11 1 11222333332 22256788999999999976543221 112333443321 1367788988
Q ss_pred HHHHHHH
Q 006253 239 AFECLVA 245 (653)
Q Consensus 239 ~~~~l~~ 245 (653)
++..|..
T Consensus 536 A~~~lm~ 542 (574)
T smart00638 536 AVLVLME 542 (574)
T ss_pred HHHHHHh
Confidence 7776654
No 258
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=86.47 E-value=49 Score=35.25 Aligned_cols=55 Identities=18% Similarity=0.288 Sum_probs=47.0
Q ss_pred HhhhHHHHHHHHHhhc-C----CCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCC
Q 006253 345 IAMAGGTCLGLVARTV-G----DDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPS 399 (653)
Q Consensus 345 ~r~~a~~~L~~l~~~~-~----~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~ 399 (653)
++.+..+.|+.+++.. + +.+.|.+.......+.+.+|..++-|+-+++.+++++.
T Consensus 496 ~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~FAe~T~ 555 (559)
T PF14868_consen 496 VKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQFAERTS 555 (559)
T ss_pred chHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccCC
Confidence 7888899999998866 2 35677787788888999999999999999999999874
No 259
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=86.36 E-value=1.9 Score=34.79 Aligned_cols=75 Identities=15% Similarity=0.023 Sum_probs=54.4
Q ss_pred chHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 006253 36 PGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQV 115 (653)
Q Consensus 36 ~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~ 115 (653)
-..+..|+.++.. +.++.+-..|+.-++.+++..+.-+. .. .+-..+..+++.|.++++.||..|-.+
T Consensus 42 ~~llk~L~~lL~~-s~d~~~laVac~Dig~~vr~~p~gr~-----ii------~~lg~K~~vM~Lm~h~d~eVr~eAL~a 109 (119)
T PF11698_consen 42 FELLKKLIKLLDK-SDDPTTLAVACHDIGEFVRHYPNGRN-----II------EKLGAKERVMELMNHEDPEVRYEALLA 109 (119)
T ss_dssp GHHHHHHHHHH-S-HHHHHHHHHHHHHHHHHHHH-GGGHH-----HH------HHHSHHHHHHHHTS-SSHHHHHHHHHH
T ss_pred cHHHHHHHHHHcc-CCCcceeehhhcchHHHHHHChhHHH-----HH------HhcChHHHHHHHhcCCCHHHHHHHHHH
Confidence 4567788899865 34777778888888888876543211 11 334578899999999999999999999
Q ss_pred HHHHHhh
Q 006253 116 VAKVAGI 122 (653)
Q Consensus 116 l~~ia~~ 122 (653)
+..+..+
T Consensus 110 vQklm~~ 116 (119)
T PF11698_consen 110 VQKLMVN 116 (119)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9988764
No 260
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=86.11 E-value=30 Score=32.37 Aligned_cols=204 Identities=11% Similarity=0.084 Sum_probs=107.6
Q ss_pred hhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCC
Q 006253 227 ATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDS 306 (653)
Q Consensus 227 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (653)
..+..+++.....++.|..++.... ...+.++..+.........+.+..++..+..+-....
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~----~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~-------------- 70 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKN----VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKAND-------------- 70 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCc----cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCc--------------
Confidence 4455778888888888888877541 2233344444444444444544455555555544210
Q ss_pred CCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCCchhchHHHHHhhh-cCcchhhHH
Q 006253 307 DIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENI-TKQEWRQRE 385 (653)
Q Consensus 307 ~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l-~~~~~~~r~ 385 (653)
..+ +.+..++..+...+.. .. -+++..|....+.+.++..++...++ ..+.+++.+...+ .+.+...+-
T Consensus 71 --r~f----~~L~~~L~~~~~r~~~--~~-~~~~~~~~~~i~~a~s~~~ic~~~p~-~g~~ll~~ls~~L~~~~~~~~~a 140 (234)
T PF12530_consen 71 --RHF----PFLQPLLLLLILRIPS--SF-SSKDEFWECLISIAASIRDICCSRPD-HGVDLLPLLSGCLNQSCDEVAQA 140 (234)
T ss_pred --hHH----HHHHHHHHHHHhhccc--cc-CCCcchHHHHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHhccccHHHHH
Confidence 111 2222222111111111 11 11234577777777888888888877 6667777788888 566667777
Q ss_pred HHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHH
Q 006253 386 AATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQ 465 (653)
Q Consensus 386 aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~ 465 (653)
.++-++..+++... -++.+ ....+.+.+..+..|.|-..-+..++-+...-.+. .....+...++..+-+
T Consensus 141 lale~l~~Lc~~~v-vd~~s----~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~-----e~~~~~~~~~l~~lW~ 210 (234)
T PF12530_consen 141 LALEALAPLCEAEV-VDFYS----AWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDS-----EEYEELKRQILQLLWE 210 (234)
T ss_pred HHHHHHHHHHHHhh-ccHHH----HHHHHHHhcCCccchHHHHHHHHHHHHhccccCCh-----hhhhHHHHHHHHHHHh
Confidence 77888888885421 22222 23334444435666777665444444332222110 1233455566666666
Q ss_pred hcc
Q 006253 466 SMK 468 (653)
Q Consensus 466 ~l~ 468 (653)
...
T Consensus 211 ~~~ 213 (234)
T PF12530_consen 211 YTS 213 (234)
T ss_pred hcc
Confidence 554
No 261
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=85.98 E-value=13 Score=31.07 Aligned_cols=83 Identities=13% Similarity=0.115 Sum_probs=58.7
Q ss_pred cchHHHHHHHHHhccc-hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHH-HHHHHHHHhccccccchhchHHHHHHHH
Q 006253 454 GNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQ-EIVQALLTVTHREDAGESRLRTAAYETL 531 (653)
Q Consensus 454 ~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~-~i~~~L~~~l~~~~~~~~~~~~~~~~~l 531 (653)
..-...+..|-..+.. ++.++..|...+..++++++.. .-..+.. .++..|.+++......+..++..+++.+
T Consensus 33 ~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~-----f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll 107 (133)
T cd03561 33 NGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKP-----FHLQVADKEFLLELVKIAKNSPKYDPKVREKALELI 107 (133)
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChH-----HHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 3445667777777775 8999999999999999998631 1122333 5666677777653111467898999999
Q ss_pred HHHHHhcccc
Q 006253 532 NEVVRCSTDE 541 (653)
Q Consensus 532 ~~l~~~~~~~ 541 (653)
.......+..
T Consensus 108 ~~W~~~f~~~ 117 (133)
T cd03561 108 LAWSESFGGH 117 (133)
T ss_pred HHHHHHhcCC
Confidence 9998888753
No 262
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=85.42 E-value=11 Score=35.10 Aligned_cols=55 Identities=18% Similarity=0.158 Sum_probs=23.3
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHhhCcchHHHHHHHHHhcCCCChhHHHHHHHHHhh
Q 006253 8 ILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKN 65 (653)
Q Consensus 8 ll~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~ 65 (653)
+..++..++.-.|..+--.|.+++. |..+..|.+.|.+....+-+|+-|+-.|+.
T Consensus 192 l~~~l~~~SalfrhEvAfVfGQl~s---~~ai~~L~k~L~d~~E~pMVRhEaAeALGa 246 (289)
T KOG0567|consen 192 LIDGLADDSALFRHEVAFVFGQLQS---PAAIPSLIKVLLDETEHPMVRHEAAEALGA 246 (289)
T ss_pred HHHhcccchHHHHHHHHHHHhhccc---hhhhHHHHHHHHhhhcchHHHHHHHHHHHh
Confidence 3333333333444444444444432 344444444444444444444444444444
No 263
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.29 E-value=53 Score=38.77 Aligned_cols=106 Identities=14% Similarity=0.081 Sum_probs=76.5
Q ss_pred HHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCcccc
Q 006253 372 VEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPII 451 (653)
Q Consensus 372 l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~ 451 (653)
+.+.+.-.|...|.-|+..++.+.+....+....+++.......+.. .|.+..||..+..++..+...+.. .
T Consensus 46 I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~-~d~~~~VR~~t~~v~s~l~t~lkk-------~ 117 (1312)
T KOG0803|consen 46 IVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLI-IDEDRTVRLLTHDVFSKLLTKLKK-------K 117 (1312)
T ss_pred HHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHh-cCccHHHHHHHHHHHHHHHHHHHH-------H
Confidence 33455566778889999999998876533333333433334444555 899999999999999999998864 4
Q ss_pred CccchHHHHHHHHHhccc-hhhHHHHHHHHHHHHH
Q 006253 452 NQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLA 485 (653)
Q Consensus 452 ~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~ 485 (653)
..+|++.++|..+-...| ...|...|..++....
T Consensus 118 lsp~LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f 152 (1312)
T KOG0803|consen 118 LSPFLKSLIPPWLGGQFDLDYPVSEAAKASFKDGF 152 (1312)
T ss_pred hhHHHHhhhhhhhheecccchHHHHHHHHHHHhhc
Confidence 689999999999988777 5677666666665443
No 264
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.28 E-value=19 Score=42.18 Aligned_cols=151 Identities=13% Similarity=0.105 Sum_probs=101.4
Q ss_pred chHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 006253 36 PGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQV 115 (653)
Q Consensus 36 ~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~ 115 (653)
++|+..+.. +...+..-.+|.....+++..+..+ .+. ..+..+..|+..+...+.+.+..+|..++.+
T Consensus 1525 ~e~l~~l~~-~~~~~~tw~vr~avl~fl~~~vy~n----------~Fv-~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~ 1592 (1710)
T KOG1851|consen 1525 PEFLRDLKM-LTADSSTWRVRSAVLKFLQTVVYSN----------IFV-SQELRRDDIRKLLESLLNDDQIEVREEAAKC 1592 (1710)
T ss_pred HHHHHHHHH-HhcccchHHHHHHHHHHHHHHHHHH----------hhc-ccchhHHHHHHHHHHHHcchHHHHHHHHHHH
Confidence 566666665 3333557788888888888877543 222 4567888999999999999988999999999
Q ss_pred HHHHHhhhcCCCCCchHHHHHHHhhcC--CChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHH
Q 006253 116 VAKVAGIELPHKQWPELIGALLSNIHQ--LPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVR 193 (653)
Q Consensus 116 l~~ia~~~~~~~~~~~l~~~l~~~l~~--~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr 193 (653)
++-+...-+. ..-+.-........++ .+.....+|...|+.++--+ |..+ ..-+.+.+..+....+ + ...++
T Consensus 1593 Lsgl~~~s~~-~~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~Vlaf-Py~v-P~wip~~L~~Ls~fa~--e-~~~i~ 1666 (1710)
T KOG1851|consen 1593 LSGLLQGSKF-QFVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAF-PYVV-PLWIPKPLMNLSSFAR--E-SAAIK 1666 (1710)
T ss_pred HHHHHhcccc-ccchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhc-cccc-hhhhHHHHHHHHhhcC--C-chHHH
Confidence 9999875433 1223333333333333 35567789999999998888 6666 3334444444444444 3 36677
Q ss_pred HHHHHHHHHHH
Q 006253 194 LAATRALYNAL 204 (653)
Q Consensus 194 ~~a~~~l~~~~ 204 (653)
.++-+++..+-
T Consensus 1667 ~tvkktvseFr 1677 (1710)
T KOG1851|consen 1667 QTVKKTVSEFR 1677 (1710)
T ss_pred HHHHHHHHHHH
Confidence 77777777654
No 265
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=85.07 E-value=3 Score=35.55 Aligned_cols=125 Identities=12% Similarity=0.073 Sum_probs=64.1
Q ss_pred hhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCC---------------CcchHHHHHH
Q 006253 346 AMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSP---------------EKLVPLVNIA 410 (653)
Q Consensus 346 r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~---------------~~~~~~l~~l 410 (653)
|.....++..++...-..--|..++.+.+.+++ +.......+..|..+.+.... +.+....+.+
T Consensus 5 ~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i 83 (148)
T PF08389_consen 5 RNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDI 83 (148)
T ss_dssp HHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHChhhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHH
Confidence 334445555555444222233344443344433 244455566665555443210 0011223444
Q ss_pred HHHHHHHhcCC---C-chHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccchhhHHHHHHHHH
Q 006253 411 LNFMLTALMQD---P-NNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGAL 481 (653)
Q Consensus 411 ~~~ll~~l~~d---~-~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~al 481 (653)
++.+...+ .. . +..+...++.+++.+..+.... .-.-.++++.+.+.+. ++..+..|+.+|
T Consensus 84 ~~~l~~~l-~~~~~~~~~~~~~~~L~~l~s~i~~~~~~--------~i~~~~~l~~~~~~l~-~~~~~~~A~~cl 148 (148)
T PF08389_consen 84 LEILSQIL-SQSSSEANEELVKAALKCLKSWISWIPIE--------LIINSNLLNLIFQLLQ-SPELREAAAECL 148 (148)
T ss_dssp HHHHHHHH-HHHCHCCHHHHHHHHHHHHHHHTTTS-HH--------HHHSSSHHHHHHHHTT-SCCCHHHHHHHH
T ss_pred HHHHHHHH-HhhccccHHHHHHHHHHHHHHHHHhCCHH--------HhccHHHHHHHHHHcC-CHHHHHHHHHhC
Confidence 44444444 22 2 2889999999999999977521 1111237777777775 555677777664
No 266
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=84.43 E-value=1.6 Score=27.29 Aligned_cols=28 Identities=21% Similarity=0.456 Sum_probs=24.8
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 006253 410 ALNFMLTALMQDPNNHVKDTTAWTLGRMF 438 (653)
Q Consensus 410 l~~~ll~~l~~d~~~~vr~~a~~~l~~~~ 438 (653)
.++.++..+ +++++.++..++++|++++
T Consensus 13 ~i~~L~~ll-~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELL-KSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHH-cCCCHHHHHHHHHHHHHHc
Confidence 578888888 8889999999999999986
No 267
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=84.17 E-value=18 Score=30.67 Aligned_cols=100 Identities=15% Similarity=0.165 Sum_probs=66.2
Q ss_pred hhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCcc
Q 006253 375 NITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQG 454 (653)
Q Consensus 375 ~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~ 454 (653)
.+..++|.. .+-++..+... ... -...+..|.+.+ ++.++.|...|+..|..+++.++.. ....-
T Consensus 12 ~l~~~dw~~----il~icD~I~~~-~~~----~k~a~ral~KRl-~~~n~~v~l~AL~LLe~~vkNCG~~-----fh~ev 76 (144)
T cd03568 12 KLTSENWGL----ILDVCDKVKSD-ENG----AKDCLKAIMKRL-NHKDPNVQLRALTLLDACAENCGKR-----FHQEV 76 (144)
T ss_pred cCCCcCHHH----HHHHHHHHhcC-Ccc----HHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHCCHH-----HHHHH
Confidence 445677844 33344444321 111 245677888889 9999999999999999999998742 11122
Q ss_pred chHHHHHHHHHhccc--hhhHHHHHHHHHHHHHhccc
Q 006253 455 NCQQIISVLLQSMKD--VPNVAEKACGALYFLAQGFE 489 (653)
Q Consensus 455 ~~~~il~~l~~~l~d--~~~v~~~a~~al~~~~~~~~ 489 (653)
--..++..+...+.+ ++.|+.+....+....+.+.
T Consensus 77 ask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 77 ASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred hhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence 223555566666554 67899999988888888764
No 268
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=83.91 E-value=3.1 Score=32.87 Aligned_cols=63 Identities=16% Similarity=0.268 Sum_probs=52.6
Q ss_pred CCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHHHHHHH
Q 006253 495 SSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDE-TAPMVMQLVPLIMMELHQT 560 (653)
Q Consensus 495 ~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~l~~~l~~~l~~~ 560 (653)
++.+.||++.++..+...+..-. ..+|.-++..|..+++.+|.. +..+..++++.++..+...
T Consensus 2 ~~~l~p~~~~l~~~i~sAMTHi~---~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 2 PELLSPFFPLLMLYISSAMTHIS---PDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred hHHHHhHHHHHHHHHHHHHHhCC---HHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 45688999999999988877664 679999999999999999988 6778888888888876653
No 269
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=83.80 E-value=48 Score=32.84 Aligned_cols=188 Identities=11% Similarity=0.170 Sum_probs=112.1
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHhhhcCC----------CCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcc
Q 006253 95 SFILKTLSSPAHDARSTASQVVAKVAGIELPH----------KQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSS 164 (653)
Q Consensus 95 ~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~----------~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~ 164 (653)
..|+..|..-+-+.|+.++.+++.+.+...+. ..||+++..|+..-.+++... .+-..|...++.
T Consensus 79 ~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial--~~g~mlRec~k~--- 153 (335)
T PF08569_consen 79 YLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIAL--NCGDMLRECIKH--- 153 (335)
T ss_dssp HHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHH--HHHHHHHHHTTS---
T ss_pred HHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccc--hHHHHHHHHHhh---
Confidence 34555555556667777777777777654321 256888888888877655322 222233332222
Q ss_pred cccchhhH-hHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhh---hcCChhHHHHHHHHHHhhhcCCcHHHHHHHH
Q 006253 165 DAVEQDHV-NKILTAVVQGMNASESNNDVRLAATRALYNALGFAQA---NFSNDMERDYIMRVVCEATLSPEVKIRQAAF 240 (653)
Q Consensus 165 ~~~~~~~~-~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~---~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~ 240 (653)
+.+.+..+ ...+-.+++.+. .++-++..-|+.++..++...+. .+. ....+.++.....++..++--.+..++
T Consensus 154 e~l~~~iL~~~~f~~ff~~~~--~~~Fdiasdaf~t~~~llt~hk~~~a~fl-~~n~d~ff~~~~~Ll~s~NYvtkrqsl 230 (335)
T PF08569_consen 154 ESLAKIILYSECFWKFFKYVQ--LPNFDIASDAFSTFKELLTRHKKLVAEFL-SNNYDRFFQKYNKLLESSNYVTKRQSL 230 (335)
T ss_dssp HHHHHHHHTSGGGGGHHHHTT--SSSHHHHHHHHHHHHHHHHSSHHHHHHHH-HHTHHHHHHHHHHHCT-SSHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHhc--CCccHhHHHHHHHHHHHHhccHHHHHHHH-HHHHHHHHHHHHHHccCCCeEeehhhH
Confidence 11100000 112223445555 57888888888888876643221 111 112356777777888888889999999
Q ss_pred HHHHHHHHHhH--HhhHHhHH--HHHHHHHHHhhcCChhHHHHHHHhHHHhhHH
Q 006253 241 ECLVAISSTYY--EKLAPYIQ--DIFNITAKAVREDEEPVALQAIEFWSSVCDE 290 (653)
Q Consensus 241 ~~l~~l~~~~~--~~~~~~l~--~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 290 (653)
+.|+++..... ..+..|+. .-+..+...+++....++..|+....-++..
T Consensus 231 kLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 231 KLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 99999997654 34456663 5677778888999999999999888877763
No 270
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.86 E-value=48 Score=32.17 Aligned_cols=311 Identities=12% Similarity=0.083 Sum_probs=162.8
Q ss_pred CCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhh
Q 006253 128 QWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFA 207 (653)
Q Consensus 128 ~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~ 207 (653)
.++-++-.+. .-.+++......++.++..+...- |+.++.+.+. .++..|+....+.++-...+.++..-+--.
T Consensus 105 a~~~~it~~~-la~~~~~~~l~ksL~al~~lt~~q-pdl~da~g~~----vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~h 178 (461)
T KOG4199|consen 105 AHDALITLLE-LAESPNESVLKKSLEAINSLTHKQ-PDLFDAEAMA----VVLKLLALKVESEEVTLLTLQWLQKACIMH 178 (461)
T ss_pred CcchhhhHHH-HhhCCchhHHHHHHHHHHHhhcCC-cchhccccHH----HHHHHHhcccchHHHHHHHHHHHHHHHHHh
Confidence 4455554444 356678888888999998887766 7766333333 233344322455677777777666533211
Q ss_pred hhhcCChhHH-HHHHHHHHhhhcC-CcHHHHHHHHHHHHHHHHHhH---------HhhHHhHH-HHHHHHHHHhh-cCCh
Q 006253 208 QANFSNDMER-DYIMRVVCEATLS-PEVKIRQAAFECLVAISSTYY---------EKLAPYIQ-DIFNITAKAVR-EDEE 274 (653)
Q Consensus 208 ~~~~~~~~~~-~~il~~l~~~~~~-~~~~~~~~~~~~l~~l~~~~~---------~~~~~~l~-~l~~~~~~~~~-~~~~ 274 (653)
.- ..+.+. ..+++.+.+.+.. ....+..+.+..+..+..... .+-+.+.. .++..+...++ ..++
T Consensus 179 E~--nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp 256 (461)
T KOG4199|consen 179 EV--NRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDP 256 (461)
T ss_pred HH--HHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCc
Confidence 10 000111 2355666654443 333566677777776654321 11111111 12333333333 2345
Q ss_pred hHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhh-hhHHHHHHHhhhccCCccCCCccccHhhhHHHHH
Q 006253 275 PVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALP-VLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCL 353 (653)
Q Consensus 275 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L 353 (653)
++-......+.+++-.. .+.+.+.+ -=+..++..|.+..+ ...|..+..|+
T Consensus 257 ~~L~~l~~tl~~lAVr~--------------------E~C~~I~e~GGl~tl~~~i~d~n~--------~~~r~l~k~~l 308 (461)
T KOG4199|consen 257 DSLVSLSTTLKALAVRD--------------------EICKSIAESGGLDTLLRCIDDSNE--------QGNRTLAKTCL 308 (461)
T ss_pred cHHHHHHHHHHHHHHHH--------------------HHHHHHHHccCHHHHHHHHhhhch--------hhHHHHHHHHH
Confidence 54444444444444211 11111110 012344454432111 24577788888
Q ss_pred HHHHhhcCCC----------chhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHH-HHHHHHHHHhcCC-
Q 006253 354 GLVARTVGDD----------IVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVN-IALNFMLTALMQD- 421 (653)
Q Consensus 354 ~~l~~~~~~~----------~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~-~l~~~ll~~l~~d- 421 (653)
+.+....|.+ ..+.++....+.. +++.+.+.++.+++-++--. ++.-..+++ ..-...+..+..+
T Consensus 309 slLralAG~DsvKs~IV~~gg~~~ii~l~~~h~--~~p~Vi~~~~a~i~~l~LR~-pdhsa~~ie~G~a~~avqAmkahP 385 (461)
T KOG4199|consen 309 SLLRALAGSDSVKSTIVEKGGLDKIITLALRHS--DDPLVIQEVMAIISILCLRS-PDHSAKAIEAGAADLAVQAMKAHP 385 (461)
T ss_pred HHHHHHhCCCchHHHHHHhcChHHHHHHHHHcC--CChHHHHHHHHHHHHHHhcC-cchHHHHHhcchHHHHHHHHHhCc
Confidence 8887777642 2344444444443 45678888888888777543 333333333 2223334444122
Q ss_pred CchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc-hhhHHHHHHHHHHHH
Q 006253 422 PNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFL 484 (653)
Q Consensus 422 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~ 484 (653)
.+..|+..++|.+.++...... ..+..+..=++.|+..-.. ++.++..|-.||..+
T Consensus 386 ~~a~vQrnac~~IRNiv~rs~~-------~~~~~l~~GiE~Li~~A~~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 386 VAAQVQRNACNMIRNIVVRSAE-------NRTILLANGIEKLIRTAKANHETCEAAAKAALRDL 442 (461)
T ss_pred HHHHHHHHHHHHHHHHHHhhhh-------ccchHHhccHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence 3568999999999999987653 3566666667777777654 566666665666543
No 271
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=82.67 E-value=13 Score=31.28 Aligned_cols=74 Identities=15% Similarity=0.087 Sum_probs=52.9
Q ss_pred chHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHH--HHHHHHHHHHhcC------CCchHHHHHHHHHHHHHH
Q 006253 367 LVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLV--NIALNFMLTALMQ------DPNNHVKDTTAWTLGRMF 438 (653)
Q Consensus 367 ~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l--~~l~~~ll~~l~~------d~~~~vr~~a~~~l~~~~ 438 (653)
..+..+...++++++.+..-|+..+-.++..|+ ..+...+ ..++..+++.+ . ..++.|+..++..+..++
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG-~~fh~evas~~Fl~el~kl~-~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCG-ERFHSEVGKFRFLNELIKLV-SPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcC-HHHHHHHHhHHHHHHHHHHh-ccccCCCCCCHHHHHHHHHHHHHHH
Confidence 445566677888888888888999999999986 3232111 23344444444 3 367899999999999999
Q ss_pred hhhc
Q 006253 439 EFLH 442 (653)
Q Consensus 439 ~~~~ 442 (653)
..+.
T Consensus 116 ~~f~ 119 (139)
T cd03567 116 LELP 119 (139)
T ss_pred HHhc
Confidence 9886
No 272
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=82.55 E-value=45 Score=37.98 Aligned_cols=135 Identities=15% Similarity=0.184 Sum_probs=76.7
Q ss_pred cCCChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHh-cccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHH
Q 006253 141 HQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQ-GMNASESNNDVRLAATRALYNALGFAQANFSNDMERDY 219 (653)
Q Consensus 141 ~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~-~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~ 219 (653)
.|-++.+|.-++..|+..+..+ |+.+ +..-.-.-+. .|. |.+.+||..++++|..+...-.....-..+.+.
T Consensus 297 RDV~~~IRaiCiqeLgiWi~~y-P~~F----l~dsYLKYiGWtLs--Dk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsR 369 (1048)
T KOG2011|consen 297 RDVDPDIRAICIQELGIWIKSY-PEIF----LSDSYLKYIGWTLS--DKNGTVRLRCLKALIKLYEKDEDKDKLELFTSR 369 (1048)
T ss_pred ccCchHHHHHHHHHHHHHHHhc-cHHH----hcchHHHHhcceee--cCccHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 5668999999999999999998 6654 2222222233 445 899999999999999877641100000011122
Q ss_pred HHHHHHhhh-cCCcHHHHHHHHHHHHHHHHHhHHhhHHhHH-HHHHHHHHHhhcCChhHHHHHHHhHHHhh
Q 006253 220 IMRVVCEAT-LSPEVKIRQAAFECLVAISSTYYEKLAPYIQ-DIFNITAKAVREDEEPVALQAIEFWSSVC 288 (653)
Q Consensus 220 il~~l~~~~-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~~~~~a~~~~~~~~ 288 (653)
+-.-+.+.. .+.+..+|...+..+..... + .++. .=+..++..+-+.+++++..|.+++..-.
T Consensus 370 FK~RIVeMadrd~~~~Vrav~L~~~~~~~~--~----g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~k~ 434 (1048)
T KOG2011|consen 370 FKDRIVEMADRDRNVSVRAVGLVLCLLLSS--S----GLLSDKDILIVYSLIYDSNRRVAVAAGEFLYKKL 434 (1048)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHHhc--c----cccChhHHHHHHHHHhccCcchHHHHHHHHHHHh
Confidence 222223333 34455666554443333221 1 1221 22333455666778888888888866544
No 273
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=82.37 E-value=15 Score=30.68 Aligned_cols=78 Identities=10% Similarity=0.090 Sum_probs=57.1
Q ss_pred chHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchh-hHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhh
Q 006253 130 PELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQD-HVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQ 208 (653)
Q Consensus 130 ~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 208 (653)
-+.+..|...+.++++.+...|+.+|..+++++ +..+-.. ....++..+...++.....+.|+..++..+..+...+.
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNc-g~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~ 114 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNC-GSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFK 114 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC-CHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHc
Confidence 578888999999999999999999999999998 4433112 22445666666666433445599999999998776553
No 274
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=81.94 E-value=61 Score=32.68 Aligned_cols=309 Identities=13% Similarity=0.158 Sum_probs=140.6
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCC-------CCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhh-ccc
Q 006253 94 KSFILKTLSSPAHDARSTASQVVAKVAGIELPH-------KQWPELIGALLSNIHQLPPHTKQATLETLGYICEEV-SSD 165 (653)
Q Consensus 94 ~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~-------~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~-~~~ 165 (653)
.+.|.+..++++-.+-.+.+.+++.++...-.. +--.-++..|...+.-++|..-+..--.++.+.... +.+
T Consensus 89 le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~ 168 (604)
T KOG4500|consen 89 LELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSR 168 (604)
T ss_pred HHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcH
Confidence 344455566777789999999999998643110 011234444444444445544333333333333322 112
Q ss_pred ccchhhH--hHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCCh---hHHH-HHHHHHHhhhcCCcHHHHHHH
Q 006253 166 AVEQDHV--NKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSND---MERD-YIMRVVCEATLSPEVKIRQAA 239 (653)
Q Consensus 166 ~~~~~~~--~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~---~~~~-~il~~l~~~~~~~~~~~~~~~ 239 (653)
.+ +.++ -.+++.+...+.-.-.+.+.....+-.+.+++++..+...+. .... ..++.+...+ .++.+.-+
T Consensus 169 ~l-~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v---~~d~~eM~ 244 (604)
T KOG4500|consen 169 EL-RAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMV---REDIDEMI 244 (604)
T ss_pred HH-HHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhh---ccchhhHH
Confidence 22 1111 234554443332112445555555555555555544322111 1111 1222222222 44556667
Q ss_pred HHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhc-CChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhh
Q 006253 240 FECLVAISSTYYEKLAPYIQDIFNITAKAVRE-DEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHAL 318 (653)
Q Consensus 240 ~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 318 (653)
++.|...++...-.+.-.-..++...+...+. .+..-+...+..+...++...-+.. |+ .+.++.-. -
T Consensus 245 feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vlllt-------GD---eSMq~L~~-~ 313 (604)
T KOG4500|consen 245 FEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLT-------GD---ESMQKLHA-D 313 (604)
T ss_pred HHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhc-------Cc---hHHHHHhc-C
Confidence 77777766654321111111233333333332 1211222233334444443221110 00 01111100 1
Q ss_pred hhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhc-------CCCchhchHHHHHh-hhcCcchhhHHHHHHH
Q 006253 319 PVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTV-------GDDIVPLVMPFVEE-NITKQEWRQREAATYA 390 (653)
Q Consensus 319 ~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~-------~~~~~~~l~~~l~~-~l~~~~~~~r~aal~~ 390 (653)
++++..+..|+...+ ...-..+.-+++.++..- ...++..++..+.+ .-.+++.+..+|++.+
T Consensus 314 p~~l~~~~sw~~S~d---------~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsA 384 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDD---------SNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSA 384 (604)
T ss_pred cHHHHHHHHHhcCCc---------hhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHH
Confidence 235556666654211 234446667777776532 23455566666654 4457788999999999
Q ss_pred HHHhhcCCC-CCcchHHHHHHHHHHHHHhcCCCchHHHHH
Q 006253 391 FGSILEGPS-PEKLVPLVNIALNFMLTALMQDPNNHVKDT 429 (653)
Q Consensus 391 l~~i~~~~~-~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~ 429 (653)
+..++--.. +..+.+ ..+...++..+ +...|+|..-
T Consensus 385 LRnl~IPv~nka~~~~--aGvteaIL~~l-k~~~ppv~fk 421 (604)
T KOG4500|consen 385 LRNLMIPVSNKAHFAP--AGVTEAILLQL-KLASPPVTFK 421 (604)
T ss_pred HHhccccCCchhhccc--cchHHHHHHHH-HhcCCcchHH
Confidence 998764321 111111 23455566666 6666666544
No 275
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=81.32 E-value=13 Score=31.14 Aligned_cols=80 Identities=16% Similarity=0.115 Sum_probs=57.6
Q ss_pred CchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhHh-HHHHHHHhcccCC-CCCHHHHHHHHHHHHHHHHh
Q 006253 129 WPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVN-KILTAVVQGMNAS-ESNNDVRLAATRALYNALGF 206 (653)
Q Consensus 129 ~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~-~l~~~l~~~l~~~-~~~~~vr~~a~~~l~~~~~~ 206 (653)
--+.+..|...++++++.++..|+.+|..+++++ +..+...... ..+.-+...+.+. ..++.||..++..+..+...
T Consensus 35 ~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNc-g~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 35 PKEAARAIRKKIKYGNPHVQLLALTLLELLVKNC-GKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhC-ChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3578899999999999999999999999999998 4433122222 3333344444432 46889999999999998765
Q ss_pred hhh
Q 006253 207 AQA 209 (653)
Q Consensus 207 ~~~ 209 (653)
++.
T Consensus 114 f~~ 116 (133)
T cd03561 114 FGG 116 (133)
T ss_pred hcC
Confidence 543
No 276
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=80.90 E-value=17 Score=30.83 Aligned_cols=77 Identities=10% Similarity=0.071 Sum_probs=58.2
Q ss_pred chHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchh-hHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhh
Q 006253 130 PELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQD-HVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQ 208 (653)
Q Consensus 130 ~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 208 (653)
-+.+..|...+.+.++.+...|+.+|..+++++ +..+-.. ....++.-+...+.+ ..++.|+..++..+..+...+.
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNC-G~~fh~evas~~fl~~l~~l~~~-~~~~~Vk~kil~li~~W~~~f~ 117 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNC-GTHFHDEVASREFMDELKDLIKT-TKNEEVRQKILELIQAWALAFR 117 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHC-CHHHHHHHhhHHHHHHHHHHHcc-cCCHHHHHHHHHHHHHHHHHhC
Confidence 478888999999999999999999999999998 4433111 224455555655554 6788999999999999876543
No 277
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=80.76 E-value=2.9 Score=26.61 Aligned_cols=41 Identities=10% Similarity=0.268 Sum_probs=29.1
Q ss_pred HHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHH
Q 006253 115 VVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETL 155 (653)
Q Consensus 115 ~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l 155 (653)
+++.++..+...-..+.+...+...+.|+++.+|++++..+
T Consensus 2 ~l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 2 ALSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred hHHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 45666666522123468888888889999999999888653
No 278
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=80.43 E-value=34 Score=28.99 Aligned_cols=76 Identities=14% Similarity=0.097 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc--hhhHHHHHHHHHHHHH
Q 006253 408 NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD--VPNVAEKACGALYFLA 485 (653)
Q Consensus 408 ~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d--~~~v~~~a~~al~~~~ 485 (653)
...+..|.+.+ ++.++.+...|+..|..+.+.++.. ....---..++..+...+.+ ++.|+.++...+....
T Consensus 40 k~a~ral~krl-~~~n~~vql~AL~LLe~~vkNCG~~-----fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 40 KYAMRALKKRL-LSKNPNVQLYALLLLESCVKNCGTH-----FHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWA 113 (142)
T ss_pred HHHHHHHHHHH-cCCChHHHHHHHHHHHHHHHHCCHH-----HHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHH
Confidence 45678888899 9999999999999999999988631 11111223445555554442 6789999999999888
Q ss_pred hccc
Q 006253 486 QGFE 489 (653)
Q Consensus 486 ~~~~ 489 (653)
..+.
T Consensus 114 ~~f~ 117 (142)
T cd03569 114 LAFR 117 (142)
T ss_pred HHhC
Confidence 8764
No 279
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=80.24 E-value=1e+02 Score=34.11 Aligned_cols=154 Identities=14% Similarity=0.138 Sum_probs=103.0
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHhhC-cchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhh
Q 006253 3 AEVTQILLNAQSVDGTVRKQAEESLKQYQEQN-LPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQR 81 (653)
Q Consensus 3 ~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~-~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~ 81 (653)
..|..++..+-|+|..+..++.+.+.+....+ -+.++..|+....+.+ +.. |..+|-. ++.
T Consensus 4 ~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~y~~~t~-s~~----~~~il~~-~~~------------ 65 (668)
T PF04388_consen 4 ASITELLSLLESNDLSVLEEIKALLQELLNSDREPWLVNGLVDYYLSTN-SQR----ALEILVG-VQE------------ 65 (668)
T ss_pred ccHHHHHHHhcCCchhhHHHHHHHHHHHhhccchHHHHHHHHHHHhhcC-cHH----HHHHHHh-cCC------------
Confidence 35778999999999999999998888765542 2577777887766522 222 2222222 111
Q ss_pred ccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCC---CCCchHHHHHHHhhc-CCChhHHHHHHHHHHH
Q 006253 82 WLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPH---KQWPELIGALLSNIH-QLPPHTKQATLETLGY 157 (653)
Q Consensus 82 ~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~---~~~~~l~~~l~~~l~-~~~~~~~~~~l~~l~~ 157 (653)
+ .-..+.+.|=..+.. +.-|..+...++.+++...+. -.-..+++.|+.++. +.+..+...|+.+|..
T Consensus 66 -----P-~~K~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~Lim 137 (668)
T PF04388_consen 66 -----P-HDKHLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIM 137 (668)
T ss_pred -----c-cHHHHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 0 001123333344443 467888889999998865221 011578899999986 4577888999999999
Q ss_pred HHhhhcccccchhhHhHHHHHHHhccc
Q 006253 158 ICEEVSSDAVEQDHVNKILTAVVQGMN 184 (653)
Q Consensus 158 l~~~~~~~~~~~~~~~~l~~~l~~~l~ 184 (653)
++..+ |..+ .+++..++..+...+.
T Consensus 138 lLP~i-p~~l-~~~L~~Lf~If~Rl~~ 162 (668)
T PF04388_consen 138 LLPHI-PSSL-GPHLPDLFNIFGRLLS 162 (668)
T ss_pred Hhccc-cchh-hHHHHHHHHHHHHHHH
Confidence 99988 7777 6888888888877664
No 280
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=80.22 E-value=11 Score=30.72 Aligned_cols=76 Identities=18% Similarity=0.290 Sum_probs=52.2
Q ss_pred CCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhH---hHHHHHHHhcccC------CCCCHHHHHHHH
Q 006253 127 KQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHV---NKILTAVVQGMNA------SESNNDVRLAAT 197 (653)
Q Consensus 127 ~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~---~~l~~~l~~~l~~------~~~~~~vr~~a~ 197 (653)
....++++.|...|++.++.++.-+|.+|..+|..- +..+ ...+ ..++..+.+.-.. ++++..||..|-
T Consensus 34 ~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G-~~~f-~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~ 111 (122)
T cd03572 34 GSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKG-NSDF-KRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQ 111 (122)
T ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhC-CHHH-HHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHH
Confidence 357799999999999999999999999999999986 3333 2212 2233333332221 245667999988
Q ss_pred HHHHHHH
Q 006253 198 RALYNAL 204 (653)
Q Consensus 198 ~~l~~~~ 204 (653)
+++..+.
T Consensus 112 El~~~if 118 (122)
T cd03572 112 ELIKAIF 118 (122)
T ss_pred HHHHHHh
Confidence 8877653
No 281
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=80.18 E-value=10 Score=28.75 Aligned_cols=69 Identities=16% Similarity=0.163 Sum_probs=49.4
Q ss_pred hHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 006253 173 NKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLV 244 (653)
Q Consensus 173 ~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~ 244 (653)
..++..+...+.+ .++.++|...+.|+.+++....++.. .-|..++..+.....++++++...+++++.
T Consensus 16 ~~fL~Pf~~i~~~-~~~~~vre~il~ci~qil~~~~~~i~--SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 16 KDFLKPFEYIMSN-NPSIDVRELILECILQILQSRGENIK--SGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHhc-cCcHHHHHHHHHHHHHHHHHhHHHHH--hccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 4455556655554 57899999999999998875443332 125778888888887778888878877764
No 282
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=79.39 E-value=26 Score=29.78 Aligned_cols=78 Identities=12% Similarity=0.158 Sum_probs=56.2
Q ss_pred HhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcC-CcHHHHHHHHHHHHHHHHHh
Q 006253 172 VNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLS-PEVKIRQAAFECLVAISSTY 250 (653)
Q Consensus 172 ~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~l~~l~~~~ 250 (653)
....+..+..-+. ..++.+...|+..+..++.-+...|..+.....+++.+..++.+ .+.+++..++..+..+...+
T Consensus 35 ~k~a~ral~KRl~--~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f 112 (144)
T cd03568 35 AKDCLKAIMKRLN--HKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEF 112 (144)
T ss_pred HHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHh
Confidence 3455666666777 67899999999999998876654443222224677777777765 68899999999999888776
Q ss_pred H
Q 006253 251 Y 251 (653)
Q Consensus 251 ~ 251 (653)
.
T Consensus 113 ~ 113 (144)
T cd03568 113 K 113 (144)
T ss_pred C
Confidence 5
No 283
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.26 E-value=14 Score=43.27 Aligned_cols=105 Identities=8% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCC--hHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchh
Q 006253 93 IKSFILKTLSSPA--HDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQD 170 (653)
Q Consensus 93 i~~~ll~~l~~~~--~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~ 170 (653)
+...+.+...... ..+-..++.+++.++..+ + +.|+.+...++....+.++..|..|+..+..+.+.. .+.. ..
T Consensus 1503 ~v~ql~n~~~e~~~~~~v~~~li~~i~~~~~a~-~-~d~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~l-ge~~-~~ 1578 (1621)
T KOG1837|consen 1503 LVSQLVNVLLEFYASDIVSKLLIAEIASDSVAD-K-DDLKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKL-GENV-IV 1578 (1621)
T ss_pred hHHHHHHhhccchhhhHHHHHHHHHHHhhccCC-h-hhhHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh-cchh-HH
Q ss_pred hHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHH
Q 006253 171 HVNKILTAVVQGMNASESNNDVRLAATRALYNA 203 (653)
Q Consensus 171 ~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~ 203 (653)
...+++|.+-+.+. |.+.+|...+-+.+..+
T Consensus 1579 lL~q~iPfLaEL~E--D~~~~Ve~~~q~li~q~ 1609 (1621)
T KOG1837|consen 1579 LLPQSIPFLAELME--DEDDEVECLCQKLIRQL 1609 (1621)
T ss_pred hhhhhhHHHHHHHh--hhHHHHHHHHHHHHHHH
No 284
>PF05536 Neurochondrin: Neurochondrin
Probab=79.04 E-value=97 Score=33.25 Aligned_cols=241 Identities=12% Similarity=0.051 Sum_probs=128.9
Q ss_pred chHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccch-hhHh----HHHHHHHhcccCC-C-CCHHHHHHHHHHHHH
Q 006253 130 PELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQ-DHVN----KILTAVVQGMNAS-E-SNNDVRLAATRALYN 202 (653)
Q Consensus 130 ~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~-~~~~----~l~~~l~~~l~~~-~-~~~~vr~~a~~~l~~ 202 (653)
++-++..+..+++.+...|..|+..+..+++.-+...... ...+ +.+..++..-..+ + +....+..|+..+..
T Consensus 4 ~~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~ 83 (543)
T PF05536_consen 4 SASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAA 83 (543)
T ss_pred hHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHH
Confidence 4567788888988888899999999999988642111101 1112 2333333322211 1 334567778888877
Q ss_pred HHHhhhhhcCChhHHHHHHHHHHhhhcCCcH-HHHHHHHHHHHHHHHHhHHhhHHhHH-HHHHHHHHHhhcCChhHHHHH
Q 006253 203 ALGFAQANFSNDMERDYIMRVVCEATLSPEV-KIRQAAFECLVAISSTYYEKLAPYIQ-DIFNITAKAVREDEEPVALQA 280 (653)
Q Consensus 203 ~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~~~~~a 280 (653)
+.. .+..........-+|.+...+...+. ++...+++||..++. +++-....+. .-++.+.+.+.+ .+.....+
T Consensus 84 f~~--~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias-~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~A 159 (543)
T PF05536_consen 84 FCR--DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIAS-SPEGAKALLESGAVPALCEIIPN-QSFQMEIA 159 (543)
T ss_pred HcC--ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHc-CcHhHHHHHhcCCHHHHHHHHHh-CcchHHHH
Confidence 654 22222112223456777777765554 888899999999994 4433222222 345555555444 55566788
Q ss_pred HHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhc
Q 006253 281 IEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTV 360 (653)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~ 360 (653)
+..|..+...... .+..-....+..+++.+....+...+ +.+-.....|..+....
T Consensus 160 l~lL~~Lls~~~~---------------~~~~~~~~~l~~il~~La~~fs~~~~---------~~kfell~~L~~~L~~~ 215 (543)
T PF05536_consen 160 LNLLLNLLSRLGQ---------------KSWAEDSQLLHSILPSLARDFSSFHG---------EDKFELLEFLSAFLPRS 215 (543)
T ss_pred HHHHHHHHHhcch---------------hhhhhhHHHHHHHHHHHHHHHHhhcc---------chHHHHHHHHHHhcCcC
Confidence 8888887753210 01111122223344444433331110 11222233333332222
Q ss_pred C---------CCchhchHHHHHhhhcC-cchhhHHHHHHHHHHhhcCC
Q 006253 361 G---------DDIVPLVMPFVEENITK-QEWRQREAATYAFGSILEGP 398 (653)
Q Consensus 361 ~---------~~~~~~l~~~l~~~l~~-~~~~~r~aal~~l~~i~~~~ 398 (653)
+ ....+.+...+...+++ .....|..++...+++.+..
T Consensus 216 ~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~ 263 (543)
T PF05536_consen 216 PILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLL 263 (543)
T ss_pred CccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 1 12345566666666665 34678899988888776643
No 285
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=78.90 E-value=61 Score=30.83 Aligned_cols=187 Identities=17% Similarity=0.173 Sum_probs=112.6
Q ss_pred CchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCC-------CCcchHHHHHHHHHHHHHhcCCCc-----hHHHHHH
Q 006253 363 DIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPS-------PEKLVPLVNIALNFMLTALMQDPN-----NHVKDTT 430 (653)
Q Consensus 363 ~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~-------~~~~~~~l~~l~~~ll~~l~~d~~-----~~vr~~a 430 (653)
.-++-+.+.+.+++.+++ .-+.++..+..+..-.+ ...+--.+-..+|.++..+ .++. +.++ .+
T Consensus 60 ~~f~Glq~Ll~KGL~Ss~--t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~-d~~~~i~~~~~~~-~~ 135 (262)
T PF14225_consen 60 GNFEGLQPLLLKGLRSSS--TYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAF-DDPNPIQPDQECI-EI 135 (262)
T ss_pred CCchhHHHHHhCccCCCC--cHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHh-cccccccccHHHH-HH
Confidence 356678888888887764 23456666666654321 1122223456789998888 7666 3444 44
Q ss_pred HHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhcc-chhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHH
Q 006253 431 AWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMK-DVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQAL 509 (653)
Q Consensus 431 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~-d~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L 509 (653)
+..|+++++.. ..+.+..++....+.-- +.......++..++ +. .+..|--.++..|
T Consensus 136 A~~La~~a~~~----------~~~~La~il~~ya~~~fr~~~dfl~~v~~~l~---~~---------f~P~~~~~~l~~L 193 (262)
T PF14225_consen 136 AEALAQVAEAQ----------GLPNLARILSSYAKGRFRDKDDFLSQVVSYLR---EA---------FFPDHEFQILTFL 193 (262)
T ss_pred HHHHHHHHHhC----------CCccHHHHHHHHHhcCCCCHHHHHHHHHHHHH---HH---------hCchhHHHHHHHH
Confidence 46777777543 34566777766655422 22333334443333 22 1334556778888
Q ss_pred HHhccccccchhchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHhHHHHHH
Q 006253 510 LTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVII 589 (653)
Q Consensus 510 ~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~ 589 (653)
+.++.+.. .-+|..++..|..++....-. .|+-.+++.++.+.++.. ....+++.+..+.
T Consensus 194 l~lL~n~~---~w~~~~~L~iL~~ll~~~d~~-~~~~~dlispllrlL~t~----------------~~~eAL~VLd~~v 253 (262)
T PF14225_consen 194 LGLLENGP---PWLRRKTLQILKVLLPHVDMR-SPHGADLISPLLRLLQTD----------------LWMEALEVLDEIV 253 (262)
T ss_pred HHHHhCCc---HHHHHHHHHHHHHHhccccCC-CCcchHHHHHHHHHhCCc----------------cHHHHHHHHHHHH
Confidence 88887664 568889999999999887644 456666777776766531 1123666666666
Q ss_pred HHhCCC
Q 006253 590 QKLGSS 595 (653)
Q Consensus 590 ~~~~~~ 595 (653)
...|+.
T Consensus 254 ~~s~s~ 259 (262)
T PF14225_consen 254 TRSGSP 259 (262)
T ss_pred hhcccc
Confidence 665543
No 286
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=78.72 E-value=6 Score=36.38 Aligned_cols=89 Identities=16% Similarity=0.183 Sum_probs=58.6
Q ss_pred ccccHhhhH-HHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhc
Q 006253 341 GAWNIAMAG-GTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALM 419 (653)
Q Consensus 341 ~~~~~r~~a-~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~ 419 (653)
+.|.+.... ..+++.+.... +.+.+.+.+++.|++.-.|.+++.++...... ...+.++..+...+
T Consensus 98 ~~W~~~D~~~~~~~~~~~~~~-----~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~-------~~~~~~l~~~~~~~- 164 (213)
T PF08713_consen 98 DNWATCDSLCSKLLGPLLKKH-----PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK-------EDFDELLEIIEALL- 164 (213)
T ss_dssp CCHHHHHHHTHHHHHHHHHHH-----GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG-------CHHHHHHHHHHHCT-
T ss_pred CcchhhhHHHHHHHHHHHHhh-----HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh-------cCHHHHHHHHHHHc-
Confidence 347655443 45555544322 67788888999988855666565544333322 34566677777778
Q ss_pred CCCchHHHHHHHHHHHHHHhhhc
Q 006253 420 QDPNNHVKDTTAWTLGRMFEFLH 442 (653)
Q Consensus 420 ~d~~~~vr~~a~~~l~~~~~~~~ 442 (653)
+|++..||.+..|+|..++...+
T Consensus 165 ~d~~~~vq~ai~w~L~~~~~~~~ 187 (213)
T PF08713_consen 165 KDEEYYVQKAIGWALREIGKKDP 187 (213)
T ss_dssp TGS-HHHHHHHHHHHHHHCTT-H
T ss_pred CCchHHHHHHHHHHHHHHHHhCH
Confidence 99999999999999999987653
No 287
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=78.68 E-value=30 Score=30.02 Aligned_cols=139 Identities=14% Similarity=0.240 Sum_probs=76.0
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccchhhHHHHHHHHHHHHHhccc
Q 006253 410 ALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFE 489 (653)
Q Consensus 410 l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~al~~~~~~~~ 489 (653)
+=|.++.+| + ...++....+.|+++.......... ....-+..+-..++..-..++ .+|...+..+..-+.
T Consensus 4 ikplLIsCL-~--~q~~k~s~~KiL~~iVs~Va~~v~~---~~~~~W~eL~d~Ils~~~~e~---~kA~~IF~~L~~~l~ 74 (174)
T PF04510_consen 4 IKPLLISCL-T--MQETKESDFKILRRIVSHVAYEVFD---LQEGGWDELSDCILSLSENEP---VKAFHIFICLPMPLY 74 (174)
T ss_pred hHHHHHHHH-H--hhcccHhHHHHHHHHHHHHHHHHHh---cCCCCchhHHHHHHHhhccch---HHHHHHHHhCCchhh
Confidence 446677777 3 3334455556666655544321110 123444555544444322123 455555555542221
Q ss_pred CCCCCCCCCchhHHHHHHHHHHhccccccchhchHHHHH-HHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHH
Q 006253 490 DAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAY-ETLNEVVRCSTDET-APMVMQLVPLIMMELHQTLE 562 (653)
Q Consensus 490 ~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~-~~l~~l~~~~~~~~-~~~~~~l~~~l~~~l~~~~~ 562 (653)
++.+.|+++.+.+...+.+..+...+.+.-..|+ .++...++...... ...+..+++.+++.+...++
T Consensus 75 -----~efl~~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~mv~Sv~elV~ 144 (174)
T PF04510_consen 75 -----GEFLIPFMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMRVDLVKELLPKMVKSVKELVE 144 (174)
T ss_pred -----hhHHHHHHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999877531111112222 34444455544332 46788888888887777765
No 288
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.36 E-value=99 Score=36.94 Aligned_cols=247 Identities=12% Similarity=0.118 Sum_probs=128.8
Q ss_pred cCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccch
Q 006253 377 TKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNC 456 (653)
Q Consensus 377 ~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 456 (653)
.+.+.++|+..+.|++.-.++ .- ..++..+-..- .+.+..+...+...++.+......... | ....-+
T Consensus 1047 ~s~s~~Irelv~rC~~~nikS----GW----k~if~i~~~aA-~~~~~~iv~~~fe~v~~i~~~~f~~~~--~-~~~~sf 1114 (1514)
T KOG0929|consen 1047 RSSSAEIRELVVRCISSNIKS----GW----KNIFKIFTTAA-SDSSKNIVELAFETVSKILQELFENVF--P-QEMDSF 1114 (1514)
T ss_pred ccCcchhHHHHHhhhhhhhhh----hh----hHHHHHHHHhh-ccchhhHHHHhHHHHHHHHHHhhhhhc--h-hhhHHH
Confidence 455677888888888732221 01 11222222223 566777777777777754443332110 0 000234
Q ss_pred HHHHHHHHHhccc--hhhHHHHHHHHHHHHHhcccCCC----------CCCCCCchhHHHHHHHHHHhccccccchhchH
Q 006253 457 QQIISVLLQSMKD--VPNVAEKACGALYFLAQGFEDAI----------SPSSPLTPFFQEIVQALLTVTHREDAGESRLR 524 (653)
Q Consensus 457 ~~il~~l~~~l~d--~~~v~~~a~~al~~~~~~~~~~~----------~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~ 524 (653)
...++.+.+...+ .+.....+..-+...+..+.+.. +.......+.-+++-.+-.+.... ...+|
T Consensus 1115 ~d~v~cl~~F~~~~~~~~~s~~aI~~lr~ca~k~~e~~~~~~~~~~~~~~~~~~~~~wfP~l~~ls~i~~~~---~~~vr 1191 (1514)
T KOG0929|consen 1115 KDCVKCLEEFTKNLGFPDDSLNAIRFLRLCALKLAEGVYNEKLKVGKDSEFDVWNSGWFPMLFQLSKIINDY---RLEVR 1191 (1514)
T ss_pred HHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhccccchhhcccccccccccceeeeehhHhhhhHHhhcc---HHHHH
Confidence 4455555444331 12222222222222222221100 001222334445555565555533 36789
Q ss_pred HHHHHHHHHHHHhcccccHH-HHHHHHHHHHHHHHHHHHhhcCChhHHHhHH-HHHHHHHhHHHHHHHHhCCCcchhhHh
Q 006253 525 TAAYETLNEVVRCSTDETAP-MVMQLVPLIMMELHQTLEAQKLSSDEREKQN-EIQGLLCGCLQVIIQKLGSSEQTKYVF 602 (653)
Q Consensus 525 ~~~~~~l~~l~~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~-~l~~~~~~~i~~i~~~~~~~~~~~~~~ 602 (653)
..+++++-.+....|++|.+ +...++..++..+...-.....+ .++.|. .-+..++..+..+....=+. .
T Consensus 1192 ~~al~vlF~il~~~g~~F~~~~We~v~~~~fpIF~~~~~~~~~~--~~~eW~~tT~~~Al~~~v~lf~~~~~~------l 1263 (1514)
T KOG0929|consen 1192 KRALEVLFDILKEHGDDFSKEFWEDVFRILFPIFDNVKLDEDES--EKDEWLSTTCNHALQALVDLFTQFFKQ------L 1263 (1514)
T ss_pred HHHHHHHHHHHHhhhhhccHHHHHHHHHheeecccccCcccchh--hhhHHHHHHHHHHHHHHHHHHHHHHHH------H
Confidence 99999999999999998854 55555553333333221100000 122231 11222333333333333222 4
Q ss_pred hHhHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHhccCCccc
Q 006253 603 MQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGLWRIRY 646 (653)
Q Consensus 603 ~~~~~~i~~~l~~~l~~~~~~~~e~~~~~~~~l~~~~~~~f~~y 646 (653)
...++.++..+......++..+-..+..|+-+++...|..|..+
T Consensus 1264 ~~lL~~~~~ll~~ci~~~n~~la~~g~~cl~~l~~~n~~~fse~ 1307 (1514)
T KOG0929|consen 1264 NNLLPKVLGLLVGCIKQDNQQLARIGTSCLLQLVSSNGEKFSEE 1307 (1514)
T ss_pred HHHHHHHHHHHHHHhcCcchhhHHhHHHHHHHHHHhcccccCHh
Confidence 45677888888888888888888899999999999999999876
No 289
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=78.34 E-value=38 Score=36.24 Aligned_cols=105 Identities=15% Similarity=0.142 Sum_probs=59.8
Q ss_pred hhhHHHHHHHHHHhhcCCCCCcchHHHH-HHHHHHHH-HhcCCCchHHHHHHHHHHHHHHhh-hccCCCCc---------
Q 006253 381 WRQREAATYAFGSILEGPSPEKLVPLVN-IALNFMLT-ALMQDPNNHVKDTTAWTLGRMFEF-LHGSTLET--------- 448 (653)
Q Consensus 381 ~~~r~aal~~l~~i~~~~~~~~~~~~l~-~l~~~ll~-~l~~d~~~~vr~~a~~~l~~~~~~-~~~~~~~~--------- 448 (653)
-.+|+++++.+.++..+-+ ....+-+. .++..+++ .+ -||+-.+|++|..++-..... .+.+....
T Consensus 358 ~~IRdss~f~vWs~~r~~S-~s~~~~lqt~L~hll~~~al-FDpel~vRr~a~Aal~E~iGR~~s~a~g~~lIslIN~~s 435 (993)
T COG5234 358 QSIRDSSCFFVWSFYRCYS-KSAIEGLQTNLIHLLLQTAL-FDPELNVRRAATAALFEVIGRHASIADGLSLISLINYVS 435 (993)
T ss_pred ceeecccceeeeeeeeccc-cccchhHHHHHHHHHHhhhh-cCchhhhhhHHHHHHHHHhccCCCcccchhhhhhcccee
Confidence 3678999988888877633 33333333 34444554 67 899999999887776544332 11110000
Q ss_pred -c---------------ccCccchHHHHHH-HHHhccc-hhhHHHHHHHHHHHHHhc
Q 006253 449 -P---------------IINQGNCQQIISV-LLQSMKD-VPNVAEKACGALYFLAQG 487 (653)
Q Consensus 449 -~---------------~~~~~~~~~il~~-l~~~l~d-~~~v~~~a~~al~~~~~~ 487 (653)
+ .....-..+++.- |++.+.. +++++.....++..+++.
T Consensus 436 v~r~s~csg~~~r~~~~~~k~~~CedVF~diLl~Nl~H~~~~~k~~~~y~l~~liK~ 492 (993)
T COG5234 436 VTRISNCSGDLCRKVAHFPKFRSCEDVFQDILLTNLQHWDVKVKQLSAYSLRQLIKY 492 (993)
T ss_pred cchhhhcchHHHHHhcCccccchHHHHHHHHHHhhhhccchhhhhhccccHHHHhcC
Confidence 0 0000011233333 6666555 578888888888888764
No 290
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=78.10 E-value=3.3 Score=26.36 Aligned_cols=41 Identities=24% Similarity=0.290 Sum_probs=27.7
Q ss_pred HHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 006253 390 AFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTL 434 (653)
Q Consensus 390 ~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l 434 (653)
+++.+.+.- +..+. .+.+...+...+ .|+++.||.+|..++
T Consensus 2 ~l~~iv~~d-p~ll~--~~~v~~~i~~rl-~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 2 ALSSIVEKD-PTLLD--SSDVQSAIIRRL-SDSSPSVREAAVDLL 42 (42)
T ss_pred hHHHHHhcC-ccccc--hHHHHHHHHHHh-cCCChHHHHHHHHHC
Confidence 455555542 22221 236778888889 999999999998653
No 291
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=77.80 E-value=82 Score=37.25 Aligned_cols=56 Identities=11% Similarity=0.090 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHHHHhhhcCC----CCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhh
Q 006253 106 HDARSTASQVVAKVAGIELPH----KQWPELIGALLSNIHQLPPHTKQATLETLGYICEE 161 (653)
Q Consensus 106 ~~vr~~~~~~l~~ia~~~~~~----~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~ 161 (653)
..+|+.++.+|..+--.+... ...-.++..++..+.+...+..+....+|..|...
T Consensus 365 ~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWR 424 (2195)
T KOG2122|consen 365 NALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWR 424 (2195)
T ss_pred HHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhcccc
Confidence 578999999988876544321 23467889998888877766655555555554443
No 292
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=77.55 E-value=82 Score=31.58 Aligned_cols=89 Identities=10% Similarity=0.130 Sum_probs=61.5
Q ss_pred HHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH--HHhhhccCCCCccccCccchHHHHHHHHHhcc
Q 006253 391 FGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGR--MFEFLHGSTLETPIINQGNCQQIISVLLQSMK 468 (653)
Q Consensus 391 l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~--~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~ 468 (653)
+..|.+...+..+......+...|..++ .++|..|.++|++...+ +...... .....++.++|.|.+..+
T Consensus 323 lEEILe~iep~eFqk~~~PLf~qia~c~-sS~HFQVAEraL~~wnNe~i~~Li~~-------n~~~ilPiiFpaLyr~sk 394 (457)
T KOG2085|consen 323 LEEILEVIEPSEFQKIMVPLFRQIARCV-SSPHFQVAERALYLWNNEYIRSLISQ-------NAEVILPIVFPALYRNSK 394 (457)
T ss_pred HHHHHHhcCHHHHHHHhHHHHHHHHHHc-CChhHHHHHHHHHHHhhHHHHHHHHh-------ccceeeehhhHHHHHHHH
Confidence 4444444333444445556677788889 99999999988765543 3333322 356788888999998877
Q ss_pred c--hhhHHHHHHHHHHHHHhc
Q 006253 469 D--VPNVAEKACGALYFLAQG 487 (653)
Q Consensus 469 d--~~~v~~~a~~al~~~~~~ 487 (653)
. |..+...++..+..|++.
T Consensus 395 ~hWN~~i~~l~~nvlk~f~em 415 (457)
T KOG2085|consen 395 SHWNQAIHNLILNVLKTFMEM 415 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 5 677888888888888874
No 293
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=77.06 E-value=98 Score=32.25 Aligned_cols=277 Identities=11% Similarity=0.095 Sum_probs=132.5
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHHHHHHhhh-c-ccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhh
Q 006253 131 ELIGALLSNIHQLPPHTKQATLETLGYICEEV-S-SDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQ 208 (653)
Q Consensus 131 ~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~-~-~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 208 (653)
+++....+...-.+|..+--++.|+......+ + |+.. +..-.+.+.+...+..+++...+.......+.+..+++.
T Consensus 293 eli~~~~e~tpmnnPvl~lL~Ifcv~~~~~acLSlpQ~~--e~~~~~t~k~I~~F~eS~e~~rllll~~~ll~n~~e~~~ 370 (743)
T COG5369 293 ELIQYRKESTPMNNPVLVLLGIFCVQDDVQACLSLPQLF--EKDIELTSKIIDRFHESKESERLLLLTPELLFNMYELTA 370 (743)
T ss_pred HHHHHHHhhccccCchheehhHHHHHHHHHHHhccchhc--chheeehHHHHHHHHhcChhhhhhhcCHHHHHhHHHHhh
Confidence 44444444444457777666666665544432 1 3332 111223444444444223444443334445555555543
Q ss_pred hhcCChh---HHHHHHHHHHhhhc-----CCcHHHHHHHHHHHHHHHHHhHHhhHHhHH--HHHHHHHHHhhcCChhHHH
Q 006253 209 ANFSNDM---ERDYIMRVVCEATL-----SPEVKIRQAAFECLVAISSTYYEKLAPYIQ--DIFNITAKAVREDEEPVAL 278 (653)
Q Consensus 209 ~~~~~~~---~~~~il~~l~~~~~-----~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~--~l~~~~~~~~~~~~~~~~~ 278 (653)
+.-.+.. .++.+++....... -.+.....+++.+|.++.+..+ .++.-+. .+.+.+++.+.+++..+..
T Consensus 371 ~~~~nq~fI~a~~~~~e~~t~~~~~~vn~~~d~l~~~a~~l~LkS~SrSV~-~LRTgL~d~~I~elLi~~Ls~Peimi~~ 449 (743)
T COG5369 371 GLEENQRFIAARSKMIESVTGTFKTKVNRKQDDLDFVAIVLFLKSMSRSVT-FLRTGLLDYPIVELLIDALSNPEIMIEF 449 (743)
T ss_pred hhhhhhhhhHHHHHHHHhhhhhhhccCCccchHHHHHHHHHHHHHhhHHHH-HHHhhccccchHHHHHHHhcCccceeec
Confidence 3222211 23456666554332 1344455667788887776543 2333332 5777778777764433322
Q ss_pred HHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhh-hhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHH
Q 006253 279 QAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALP-VLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVA 357 (653)
Q Consensus 279 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~ 357 (653)
.+. +.+|.... +..+.-..++. .+++.+.+.+... + + ..|......+..+.
T Consensus 450 ~~t---~~icn~vv----------------~fsnL~~~fL~~~iIdvl~~~v~sK-D-----d---aLqans~wvlrHlm 501 (743)
T COG5369 450 PDT---IDICNKVV----------------PFSNLGAGFLEKSIIDVLVNLVMSK-D-----D---ALQANSEWVLRHLM 501 (743)
T ss_pred cch---hhhhheee----------------eccchHHHHHHhhHHHHHHHHhhcc-h-----h---hhhhcchhhhhhhh
Confidence 222 22332110 11111122221 3566666655422 1 1 34444445555554
Q ss_pred hhcCCC----ch-hchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCC-CcchHH------HHHHHHHHHHHhcCCCchH
Q 006253 358 RTVGDD----IV-PLVMPFVEENITKQEWRQREAATYAFGSILEGPSP-EKLVPL------VNIALNFMLTALMQDPNNH 425 (653)
Q Consensus 358 ~~~~~~----~~-~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~-~~~~~~------l~~l~~~ll~~l~~d~~~~ 425 (653)
-.+.+. .+ ..=+..+....+|+.|.+.+..+..+..+.-..++ +....+ ..-+...++.-+ ...+|.
T Consensus 502 yncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~-e~~np~ 580 (743)
T COG5369 502 YNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKY-EENNPM 580 (743)
T ss_pred hcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHH-HhcCch
Confidence 444221 11 12345566778999999999999999887653222 111111 112344455555 555555
Q ss_pred HHHHHHHHHHHHHh
Q 006253 426 VKDTTAWTLGRMFE 439 (653)
Q Consensus 426 vr~~a~~~l~~~~~ 439 (653)
--.-.++.+-+++.
T Consensus 581 ~i~~~~yilv~~aa 594 (743)
T COG5369 581 EILEGCYILVRNAA 594 (743)
T ss_pred hhhhhHHHHHHHHh
Confidence 55555665555543
No 294
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=76.35 E-value=1.8e+02 Score=34.81 Aligned_cols=71 Identities=15% Similarity=0.055 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHH--HHHHHHHhccc-hhhHHHHHHHHHHHH
Q 006253 408 NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQ--IISVLLQSMKD-VPNVAEKACGALYFL 484 (653)
Q Consensus 408 ~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~--il~~l~~~l~d-~~~v~~~a~~al~~~ 484 (653)
.+++..++..| ++....|...+|-+|-+++...+. ..+++-+ .++.|...+++ +.-+...++.||.++
T Consensus 529 ~NCLq~LLQ~L-KS~SLTiVSNaCGTLWNLSAR~p~--------DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNL 599 (2195)
T KOG2122|consen 529 HNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARSPE--------DQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNL 599 (2195)
T ss_pred hhHHHHHHHHh-hhcceEEeecchhhhhhhhcCCHH--------HHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHH
Confidence 46788888899 888888999999999888876652 3344433 35556666665 556677788888888
Q ss_pred Hhc
Q 006253 485 AQG 487 (653)
Q Consensus 485 ~~~ 487 (653)
+..
T Consensus 600 ln~ 602 (2195)
T KOG2122|consen 600 LNF 602 (2195)
T ss_pred hcC
Confidence 753
No 295
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=76.16 E-value=24 Score=28.53 Aligned_cols=75 Identities=11% Similarity=-0.044 Sum_probs=50.9
Q ss_pred CchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHH--HHHHHHHH-----HhcCCCchHHHHHHHHHHH
Q 006253 363 DIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVN--IALNFMLT-----ALMQDPNNHVKDTTAWTLG 435 (653)
Q Consensus 363 ~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~--~l~~~ll~-----~l~~d~~~~vr~~a~~~l~ 435 (653)
.....++..+...+.+++|.+..-|+..+-.++..|+ ..+...+. ..+..++. ....+.+..||..+..++.
T Consensus 33 ~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g-~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~ 111 (115)
T cd00197 33 VGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCG-ERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQ 111 (115)
T ss_pred ccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHcc-HHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHH
Confidence 4456788888888999999999999999999999885 33333221 11122221 1113457899999988887
Q ss_pred HHH
Q 006253 436 RMF 438 (653)
Q Consensus 436 ~~~ 438 (653)
.+.
T Consensus 112 ~w~ 114 (115)
T cd00197 112 LWA 114 (115)
T ss_pred HHh
Confidence 654
No 296
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=75.92 E-value=23 Score=30.46 Aligned_cols=85 Identities=16% Similarity=0.227 Sum_probs=52.8
Q ss_pred chHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHhHHHHHHHHhCCCcchhh
Q 006253 522 RLRTAAYETLNEVVRCSTDE-TAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKY 600 (653)
Q Consensus 522 ~~~~~~~~~l~~l~~~~~~~-~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~ 600 (653)
.+-..+.+++-.++-.+.+. |.|.+.+++.=-...+... .+.... .+.. ..+..+..++..+++-
T Consensus 36 ~vE~~v~~~~~~lV~KLnE~~FRPlF~~l~dWA~~~l~~~-----~~~~~~---~R~i-tfy~l~~~l~e~LKsl----- 101 (153)
T PF08146_consen 36 EVESSVISAFVSLVLKLNEATFRPLFLKLVDWATSGLPKS-----DSSGSR---ARLI-TFYRLLNALAEKLKSL----- 101 (153)
T ss_pred HHHHHHHHHHHHHHHHcccchhHhHHHHHHHHHcccCCcc-----cCcCch---hHHH-HHHHHHHHHHHHHHHH-----
Confidence 45557788888888877764 7888776333221111110 001111 1111 3567778888888777
Q ss_pred HhhHhHHHHHHHHHHHHhccC
Q 006253 601 VFMQYADQMMGLFLRVFAIRS 621 (653)
Q Consensus 601 ~~~~~~~~i~~~l~~~l~~~~ 621 (653)
|.||..-+++.....|+..+
T Consensus 102 -f~~Y~~~ll~~~~~~L~~~~ 121 (153)
T PF08146_consen 102 -FTPYFSYLLDNAVDLLKQFN 121 (153)
T ss_pred -HHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999998743
No 297
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=75.91 E-value=12 Score=31.54 Aligned_cols=77 Identities=13% Similarity=0.162 Sum_probs=54.8
Q ss_pred chHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchh-hHhHHHHHHHhcccCCCCCHH--HHHHHHHHHHHHHHh
Q 006253 130 PELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQD-HVNKILTAVVQGMNASESNND--VRLAATRALYNALGF 206 (653)
Q Consensus 130 ~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~~--vr~~a~~~l~~~~~~ 206 (653)
.+.+..|...+.+.++.+...|+.+|..+++++ +..+-.. ....++..+...+......+. ||..++..+..+...
T Consensus 41 kea~~~l~krl~~~~~~vq~~aL~lld~lvkNc-g~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 41 KEAARALRKRLKHGNPNVQLLALTLLDALVKNC-GPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHS-HHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcC-CHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 578888999999999999999999999999998 3333111 123455555555543233333 999999999987765
Q ss_pred h
Q 006253 207 A 207 (653)
Q Consensus 207 ~ 207 (653)
+
T Consensus 120 f 120 (140)
T PF00790_consen 120 F 120 (140)
T ss_dssp T
T ss_pred H
Confidence 5
No 298
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=75.85 E-value=40 Score=28.39 Aligned_cols=77 Identities=9% Similarity=0.107 Sum_probs=52.4
Q ss_pred hHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhc------CCcHHHHHHHHHHHHHH
Q 006253 173 NKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATL------SPEVKIRQAAFECLVAI 246 (653)
Q Consensus 173 ~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~------~~~~~~~~~~~~~l~~l 246 (653)
...+..+..-++ .+++.+...|+..|..++.-+...|..+.....+++-+..++. ..+..++..++..+..+
T Consensus 37 k~a~rai~krl~--~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W 114 (139)
T cd03567 37 QLAVRLLAHKIQ--SPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSW 114 (139)
T ss_pred HHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHH
Confidence 345555666677 6789999999999998887554433222222445655655553 25689999999999988
Q ss_pred HHHhH
Q 006253 247 SSTYY 251 (653)
Q Consensus 247 ~~~~~ 251 (653)
...++
T Consensus 115 ~~~f~ 119 (139)
T cd03567 115 TLELP 119 (139)
T ss_pred HHHhc
Confidence 87765
No 299
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.39 E-value=1.5e+02 Score=33.47 Aligned_cols=62 Identities=11% Similarity=0.109 Sum_probs=49.4
Q ss_pred HHHHHHhHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHhcc
Q 006253 577 IQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGL 641 (653)
Q Consensus 577 l~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~e~~~~~~~~l~~~~~~ 641 (653)
+|-.+++++......+.... ..+-|.+.+..+.+++.+..+++-+.+.|+.++..++...|.
T Consensus 819 irvkaLdvl~~gl~~La~~~---n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgD 880 (1014)
T KOG4524|consen 819 IRVKALDVLSLGLPLLATYH---NLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGD 880 (1014)
T ss_pred HHHHHHHHHHhccHHHhccc---hhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhh
Confidence 44457777777666665542 228899999999999999999988899999999999888775
No 300
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=75.39 E-value=8.5 Score=30.39 Aligned_cols=61 Identities=15% Similarity=0.303 Sum_probs=50.5
Q ss_pred CcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhcc
Q 006253 401 EKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMK 468 (653)
Q Consensus 401 ~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~ 468 (653)
+.+.++++.++..+...+ .+-.+.||..++..|.-+.+.+++. ....+...+++.+...+.
T Consensus 3 ~~l~p~~~~l~~~i~sAM-THi~~~Ir~dsl~~L~~lL~~~p~~------~~~~~~~kil~~f~~ll~ 63 (102)
T PF12333_consen 3 ELLSPFFPLLMLYISSAM-THISPDIREDSLKFLDLLLEHAPDE------LCSGGWVKILPNFLDLLG 63 (102)
T ss_pred HHHHhHHHHHHHHHHHHH-HhCCHHHHHhHHHHHHHHHHHCChH------hHhhhHHHHHHHHHHHHC
Confidence 457789999999999999 9999999999999999999998742 135677778887777766
No 301
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=74.69 E-value=73 Score=35.16 Aligned_cols=93 Identities=11% Similarity=0.089 Sum_probs=66.2
Q ss_pred chHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhh
Q 006253 130 PELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQA 209 (653)
Q Consensus 130 ~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~ 209 (653)
-.++..|-..+. .+..|..++..|+.++..- |..+-.-.-..+++.++.+|.. |.+..+-..|+.+|..++..++.
T Consensus 69 K~~~~~l~~~~~--~~~~Rl~~L~Ll~~~v~~q-p~~l~~i~~t~Lf~~LLk~L~~-D~~~~~~~~al~~LimlLP~ip~ 144 (668)
T PF04388_consen 69 KHLFDKLNDYFV--KPSYRLQALTLLGHFVRSQ-PPWLYKILQTPLFKSLLKCLQF-DTSITVVSSALLVLIMLLPHIPS 144 (668)
T ss_pred HHHHHHHHHHHc--CchhHHHHHHHHHHHHhcC-CchHHHHhcChhHHHHHHHHhh-cccHHHHHHHHHHHHHHhccccc
Confidence 478888888876 4568899999999998876 4444122224688888888876 88899999999999999887765
Q ss_pred hcCChhHHHHHHHHHHhhh
Q 006253 210 NFSNDMERDYIMRVVCEAT 228 (653)
Q Consensus 210 ~~~~~~~~~~il~~l~~~~ 228 (653)
... .+...++.++..++
T Consensus 145 ~l~--~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 145 SLG--PHLPDLFNIFGRLL 161 (668)
T ss_pred hhh--HHHHHHHHHHHHHH
Confidence 432 23345555555444
No 302
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=74.07 E-value=78 Score=29.67 Aligned_cols=122 Identities=16% Similarity=0.168 Sum_probs=69.1
Q ss_pred hcCCChhHHHHHHHHHHHHHhhhccccc-c-------hhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhc
Q 006253 140 IHQLPPHTKQATLETLGYICEEVSSDAV-E-------QDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANF 211 (653)
Q Consensus 140 l~~~~~~~~~~~l~~l~~l~~~~~~~~~-~-------~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~ 211 (653)
+.++++.+.+.++.+...+.... -..+ . ...+..+-..+++.+. +.++.+|..+++.+..++.......
T Consensus 2 l~d~d~~v~K~~I~~~~~iy~~~-~~~i~~~~~~~~~W~~~~~lK~~Il~~~~--~~~~gvk~~~iKFle~vIl~qs~~~ 78 (239)
T PF11935_consen 2 LNDEDPAVVKRAIQCSTSIYPLV-FRWICVNPSDEQLWESMNELKDRILSLWD--SENPGVKLAAIKFLERVILVQSPGS 78 (239)
T ss_dssp CT-SSHHHHHHHHHHHHHHHHHH-HHHHS--HHHHHHHHHHHHHHHHHHHGGG--SSSHHHHHHHHHHHHHHHHHTS---
T ss_pred CCCCcHHHHHHHHHHHHHHHHHH-HHHHcCCchHHHHHHHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHhcCCCC
Confidence 34556666666666666554432 1111 0 1223444445566666 5688999999999998886432111
Q ss_pred C---------Ch-------------------hHHHHHHHHHHhhhcCC--cHHHHHHHHHHHHHHHHHhHHhhHHhHHHH
Q 006253 212 S---------ND-------------------MERDYIMRVVCEATLSP--EVKIRQAAFECLVAISSTYYEKLAPYIQDI 261 (653)
Q Consensus 212 ~---------~~-------------------~~~~~il~~l~~~~~~~--~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l 261 (653)
. .+ ..-+.++..|+..+..+ +..+...++.+|..++...|.++ ..+
T Consensus 79 ~~~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP~~~----~~I 154 (239)
T PF11935_consen 79 SDSPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRPQFM----SRI 154 (239)
T ss_dssp TTS---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSGGGH----HHH
T ss_pred CCCccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhHHH----HHH
Confidence 0 00 00123677777776543 57778888899999999887654 345
Q ss_pred HHHHHHH
Q 006253 262 FNITAKA 268 (653)
Q Consensus 262 ~~~~~~~ 268 (653)
++.+.+.
T Consensus 155 l~~ll~~ 161 (239)
T PF11935_consen 155 LPALLSF 161 (239)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 5544443
No 303
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.94 E-value=4.3 Score=36.09 Aligned_cols=67 Identities=9% Similarity=0.062 Sum_probs=54.7
Q ss_pred HHhHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccCcchhhhHHHHHHHH---HHHhccCCccc-hhhhcCC
Q 006253 581 LCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGAL---AYATGLWRIRY-CLIVMGL 653 (653)
Q Consensus 581 ~~~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~e~~~~~~~~l---~~~~~~~f~~y-~~i~~~l 653 (653)
+-.-+..+..+.|+. +-|.+++++..+-..|...+.++.+.++..+..+ +.+.|....|| .+++|.|
T Consensus 134 A~~Gi~DLLl~~g~k------ilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~aLVPfYRQlLp~~ 204 (262)
T KOG3961|consen 134 ARQGITDLLLAGGEK------ILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAALVPFYRQLLPVL 204 (262)
T ss_pred hhhcHHHHHHhcccc------cccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchhhhhHHHHhhhhh
Confidence 444566677777777 8999999999999999999999999888877765 56788999999 8888764
No 304
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=73.51 E-value=1e+02 Score=30.73 Aligned_cols=101 Identities=19% Similarity=0.253 Sum_probs=64.0
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccc--hhhHh
Q 006253 96 FILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVE--QDHVN 173 (653)
Q Consensus 96 ~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~--~~~~~ 173 (653)
.++++.+... .-++-+++.+..+.++. | ..-.+-++.-+.++.+.+..+|..|+.-|-.+|.. +.+. .+.+.
T Consensus 29 ~il~~~k~~~-k~k~lasq~ip~~fk~f-p-~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~---d~~~rv~d~l~ 102 (460)
T KOG2213|consen 29 GILKAVKGTS-KEKRLASQFIPRFFKHF-P-SLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG---DALSRVNDVLV 102 (460)
T ss_pred HHHHHhhcch-HHHHHHHHHHHHHHhhC-c-hhhhHHHHhhhccccccchhhHHHHHhccchhccC---chhhhhHHHHH
Confidence 4455544443 34568889999998874 5 24556777778888899999999999999888875 2220 12223
Q ss_pred HHHHH-----HHhcccCCCCCHHHHHHHHHHHHHHH
Q 006253 174 KILTA-----VVQGMNASESNNDVRLAATRALYNAL 204 (653)
Q Consensus 174 ~l~~~-----l~~~l~~~~~~~~vr~~a~~~l~~~~ 204 (653)
+++.. +++.+. -.+..+|..+++-+..-+
T Consensus 103 qLLnk~sl~~Lf~~~~--~~D~~irek~l~fi~tKl 136 (460)
T KOG2213|consen 103 QLLNKASLTGLFGQIE--VGDEQIREKVLKFIRTKL 136 (460)
T ss_pred HHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHh
Confidence 33221 122222 246778888887776544
No 305
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=73.45 E-value=11 Score=32.68 Aligned_cols=129 Identities=15% Similarity=0.097 Sum_probs=78.1
Q ss_pred cHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHH--HHHHHHHHHHhcC-
Q 006253 344 NIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLV--NIALNFMLTALMQ- 420 (653)
Q Consensus 344 ~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l--~~l~~~ll~~l~~- 420 (653)
++|..+.-++.++....++.+-..+-+++...+.+.+....-.++.++..+..+. ++.....+ +.+++.++... .
T Consensus 20 ~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~-~dv~~~l~~~eg~~~~l~~~~-~~ 97 (157)
T PF11701_consen 20 EVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGP-PDVGSELFLSEGFLESLLPLA-SR 97 (157)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTT-HHHHHHHCCTTTHHHHHHHHH-H-
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCC-HHHHHHHHhhhhHHHHHHHHH-hc
Confidence 5788888888887666666777777778877776665555666677777766653 22221111 23445555555 4
Q ss_pred -CCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhcc-c-hhh-HHHHHHHHHH
Q 006253 421 -DPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMK-D-VPN-VAEKACGALY 482 (653)
Q Consensus 421 -d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~-d-~~~-v~~~a~~al~ 482 (653)
.++..+..+++.++..-+..-. ...-.....++.|.+... + +.. +|..|+-.|.
T Consensus 98 ~~~~~~~~~~~lell~aAc~d~~--------~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 98 KSKDRKVQKAALELLSAACIDKS--------CRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp CTS-HHHHHHHHHHHHHHTTSHH--------HHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHccHH--------HHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 6778888888888877664332 123344455666666664 2 344 7777776665
No 306
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=73.16 E-value=1.1e+02 Score=30.81 Aligned_cols=137 Identities=13% Similarity=0.113 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCC
Q 006253 108 ARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASE 187 (653)
Q Consensus 108 vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~ 187 (653)
...+++.|+..+.+.+ | ..-+..+..++...--.+......-+.-+..+++..+|..+ +..+..++..+..+++ .
T Consensus 278 yh~QLaYcivQfveKd-~-kl~~~VIrglLK~WP~tnS~KEVmFL~ElEEILe~iep~eF-qk~~~PLf~qia~c~s--S 352 (457)
T KOG2085|consen 278 YHKQLAYCIVQFVEKD-P-KLTETVIRGLLKYWPKTNSSKEVMFLNELEEILEVIEPSEF-QKIMVPLFRQIARCVS--S 352 (457)
T ss_pred cccccceeeeeeeccC-c-cccHHHHHHHHHhcCCCCCcceeeeHhhHHHHHHhcCHHHH-HHHhHHHHHHHHHHcC--C
Confidence 3445555555555544 2 12334444444443222333344456677777777666656 5666677777778888 5
Q ss_pred CCHHHHHHHHHHHHHH--HHhhhhhcCChhHHHHHHHHHHh----hhc-CCcHHHHHHHHHHHHHHHHHhHHhhH
Q 006253 188 SNNDVRLAATRALYNA--LGFAQANFSNDMERDYIMRVVCE----ATL-SPEVKIRQAAFECLVAISSTYYEKLA 255 (653)
Q Consensus 188 ~~~~vr~~a~~~l~~~--~~~~~~~~~~~~~~~~il~~l~~----~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~ 255 (653)
+.-.|...|+....+= ...+.++ ...++|+++. ..+ +-+..+..-++..+..+.+..++.|.
T Consensus 353 ~HFQVAEraL~~wnNe~i~~Li~~n------~~~ilPiiFpaLyr~sk~hWN~~i~~l~~nvlk~f~emd~~LFe 421 (457)
T KOG2085|consen 353 PHFQVAERALYLWNNEYIRSLISQN------AEVILPIVFPALYRNSKSHWNQAIHNLILNVLKTFMEMDPKLFE 421 (457)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHhc------cceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 6677777777665431 1111111 1234444443 332 23445555566666666666655444
No 307
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=73.10 E-value=68 Score=29.72 Aligned_cols=120 Identities=12% Similarity=0.140 Sum_probs=72.1
Q ss_pred CCchHH-HHHHHhhcC-CChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHH
Q 006253 128 QWPELI-GALLSNIHQ-LPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALG 205 (653)
Q Consensus 128 ~~~~l~-~~l~~~l~~-~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~ 205 (653)
..|-++ |++.....+ +.+..|-.++.+++.+++.-+.+.+..-....++|.++..+. ..+..-+..|..++..++.
T Consensus 120 ~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime--~GSelSKtvA~fIlqKIll 197 (293)
T KOG3036|consen 120 HIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIME--SGSELSKTVATFILQKILL 197 (293)
T ss_pred cChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHh--cccHHHHHHHHHHHHHHhh
Confidence 345443 444443333 356789999999999999864443311224678999998887 4666777778887777653
Q ss_pred ------hhhhhcCChhHHHHHHH-HHHhhhcCCcHHHHHHHHHHHHHHHHH
Q 006253 206 ------FAQANFSNDMERDYIMR-VVCEATLSPEVKIRQAAFECLVAISST 249 (653)
Q Consensus 206 ------~~~~~~~~~~~~~~il~-~l~~~~~~~~~~~~~~~~~~l~~l~~~ 249 (653)
|+-..++.-...+.++. .+..+.+.+++.+.+.+++|..++..+
T Consensus 198 dD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn 248 (293)
T KOG3036|consen 198 DDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN 248 (293)
T ss_pred ccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Confidence 11111100001122333 334455667888888888888877664
No 308
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.93 E-value=67 Score=30.88 Aligned_cols=103 Identities=17% Similarity=0.160 Sum_probs=61.4
Q ss_pred HHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCcccc
Q 006253 372 VEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPII 451 (653)
Q Consensus 372 l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~ 451 (653)
+...+.+.++.+|.+|+..+..+..+ +...+..+-...++.+...+ ++..+ .+-|..++.+++.... .
T Consensus 8 lv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~-~~~~~--~~~a~~alVnlsq~~~--------l 75 (353)
T KOG2973|consen 8 LVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLL-KDLDP--AEPAATALVNLSQKEE--------L 75 (353)
T ss_pred HHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHc-cCccc--ccHHHHHHHHHHhhHH--------H
Confidence 34567788899999999877666654 22444444456677777777 77666 4455567777776542 2
Q ss_pred CccchHHHHHHHHHhccc-hhhHHHHHHHHHHHHHh
Q 006253 452 NQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQ 486 (653)
Q Consensus 452 ~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~ 486 (653)
.+..+..++..+...+-+ ........|..+.++.+
T Consensus 76 ~~~ll~~~~k~l~~~~~~p~~~lad~~cmlL~NLs~ 111 (353)
T KOG2973|consen 76 RKKLLQDLLKVLMDMLTDPQSPLADLICMLLSNLSR 111 (353)
T ss_pred HHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHhcc
Confidence 344444444444444433 23444555666666654
No 309
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=72.59 E-value=42 Score=33.15 Aligned_cols=104 Identities=18% Similarity=0.164 Sum_probs=63.7
Q ss_pred hhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCc
Q 006253 374 ENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQ 453 (653)
Q Consensus 374 ~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~ 453 (653)
+.....+|...-.+|--++.--++ -...+..|.+.+ ++.+|.|...|+..++.+...|+..-.. ....
T Consensus 19 e~nT~enW~~IlDvCD~v~~~~~~---------~kd~lk~i~KRl-n~~dphV~L~AlTLlda~~~NCg~~~r~--EVsS 86 (462)
T KOG2199|consen 19 EKNTSENWSLILDVCDKVGSDPDG---------GKDCLKAIMKRL-NHKDPHVVLQALTLLDACVANCGKRFRL--EVSS 86 (462)
T ss_pred cccccccHHHHHHHHHhhcCCCcc---------cHHHHHHHHHHh-cCCCcchHHHHHHHHHHHHHhcchHHHH--HHhh
Confidence 445667887755544444332222 234577888889 9999999999999999999988742110 0112
Q ss_pred cchHHHHHHHHHhccchhhHHHHHHHHHHHHHhcccC
Q 006253 454 GNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFED 490 (653)
Q Consensus 454 ~~~~~il~~l~~~l~d~~~v~~~a~~al~~~~~~~~~ 490 (653)
..|..-+..++.. ...++|+++....+....+.++.
T Consensus 87 r~F~~el~al~~~-~~h~kV~~k~~~lv~eWsee~K~ 122 (462)
T KOG2199|consen 87 RDFTTELRALIES-KAHPKVCEKMRDLVKEWSEEFKK 122 (462)
T ss_pred hhHHHHHHHHHhh-cccHHHHHHHHHHHHHHHHHhcc
Confidence 2233333333332 12578888877777777776653
No 310
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=72.50 E-value=17 Score=27.98 Aligned_cols=61 Identities=20% Similarity=0.141 Sum_probs=46.6
Q ss_pred CcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCc--hHHHHHHHHHHHHHHhh
Q 006253 378 KQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPN--NHVKDTTAWTLGRMFEF 440 (653)
Q Consensus 378 ~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~--~~vr~~a~~~l~~~~~~ 440 (653)
+++|..|+-|...++.++..++ ......-+.++..+.+.+ .|++ ...++-|+..|..++..
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~-~~~~~L~~Ri~~tl~k~l-~d~~~~~~t~YGAi~gL~~lG~~ 79 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFS-SSYPTLQPRITRTLLKAL-LDPKKPLGTHYGAIVGLSALGPE 79 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhc-cccchHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHHHHH
Confidence 4579999999999999998763 444555667888888888 7654 46788888888887543
No 311
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.37 E-value=2.4e+02 Score=34.62 Aligned_cols=132 Identities=16% Similarity=0.149 Sum_probs=94.4
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc--hhhHHHHHHHHHHHHHhc
Q 006253 410 ALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD--VPNVAEKACGALYFLAQG 487 (653)
Q Consensus 410 l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d--~~~v~~~a~~al~~~~~~ 487 (653)
.+..+...+ ..++|..|-++..++++++-..+ ..++...+...++..+.+ ++.-|.--..+++.+-+.
T Consensus 877 ~~~l~~~sl-~~~~p~~rc~~~ea~arLaq~v~---------~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhky 946 (2067)
T KOG1822|consen 877 ALTLIVNSL-INPNPKLRCAAAEALARLAQVVG---------SAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKY 946 (2067)
T ss_pred HHHHHhhhh-ccCChHHHHHHHHHHHHHHHhcc---------ccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHh
Confidence 345556677 78999999999999999998876 467888888888888886 344444444556666555
Q ss_pred ccCCCCCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Q 006253 488 FEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELH 558 (653)
Q Consensus 488 ~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~ 558 (653)
.+. -.-..++..-+..++...+++. .+.+++.++.++..++...|..+.-+....+..+...+.
T Consensus 947 vgs-----~~s~qhl~t~v~illal~~Ds~--~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLl 1010 (2067)
T KOG1822|consen 947 VGS-----IGSGQHLNTSVSILLALATDST--SPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLL 1010 (2067)
T ss_pred ccC-----CCCchhcccHHHHHHHHhhcCC--CchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcC
Confidence 442 1223466666777777777666 368999999999999999998776666666655555543
No 312
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.23 E-value=1.6e+02 Score=32.43 Aligned_cols=185 Identities=14% Similarity=0.077 Sum_probs=113.4
Q ss_pred hHHHHHHHHHHHHHHhh----CcchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhh------hHHHhhhhccCCC
Q 006253 17 GTVRKQAEESLKQYQEQ----NLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQH------RKFELVQRWLSLD 86 (653)
Q Consensus 17 ~~~r~~A~~~L~~~~~~----~~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~------~~~~~~~~~~~l~ 86 (653)
.+-|+.|-..|..|.++ ....-+..+++.|..+..+++.-..++-.+-+.+..-.++ ++......|- .
T Consensus 37 ~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~i--a 114 (970)
T KOG0946|consen 37 LEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWI--A 114 (970)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHH--H
Confidence 56788888888776554 1223455677888876668888888877776666543211 1111111221 0
Q ss_pred hH--HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCC-----CCCchHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q 006253 87 SS--VKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPH-----KQWPELIGALLSNIHQLPPHTKQATLETLGYIC 159 (653)
Q Consensus 87 ~~--~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~-----~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~ 159 (653)
+. ..+.....+++.+...+-.||..+.+.+.++.+...++ -..|.=+..++..+.|..+.+|..++..|..+.
T Consensus 115 e~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~ 194 (970)
T KOG0946|consen 115 EQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELV 194 (970)
T ss_pred HHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHH
Confidence 00 01123346667777788999999999999999876332 135777788888889988999999999999998
Q ss_pred hhhcccccchhhHhHHHHHHHhcccCC---CCCHHHHHHHHHHHHHHHH
Q 006253 160 EEVSSDAVEQDHVNKILTAVVQGMNAS---ESNNDVRLAATRALYNALG 205 (653)
Q Consensus 160 ~~~~~~~~~~~~~~~l~~~l~~~l~~~---~~~~~vr~~a~~~l~~~~~ 205 (653)
+.. +..----.+..++..++..+... |.+ -|-.-++..+.+++.
T Consensus 195 k~n-~~IQKlVAFENaFerLfsIIeeEGg~dGg-IVveDCL~ll~NLLK 241 (970)
T KOG0946|consen 195 KDN-SSIQKLVAFENAFERLFSIIEEEGGLDGG-IVVEDCLILLNNLLK 241 (970)
T ss_pred ccC-chHHHHHHHHHHHHHHHHHHHhcCCCCCc-chHHHHHHHHHHHHh
Confidence 876 43210012345555555555421 221 234445555555554
No 313
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=71.15 E-value=1.5e+02 Score=31.66 Aligned_cols=64 Identities=11% Similarity=0.076 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCC-ccccCccchHHHHHHHHHhccc
Q 006253 405 PLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLE-TPIINQGNCQQIISVLLQSMKD 469 (653)
Q Consensus 405 ~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~-~~~~~~~~~~~il~~l~~~l~d 469 (653)
.++..++..+...+ +..|..|+..||...-+++..++-.-+. ++...++++..++..+-..-.|
T Consensus 566 ~FLkTVv~KLFEFM-hE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~d 630 (1053)
T COG5101 566 SFLKTVVKKLFEFM-HEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGD 630 (1053)
T ss_pred HHHHHHHHHHHHHH-hhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhccc
Confidence 46677778888888 8899999999999999998877532111 1233466777777666655555
No 314
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=70.88 E-value=72 Score=27.89 Aligned_cols=100 Identities=13% Similarity=0.147 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCh----h----HHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHH
Q 006253 190 NDVRLAATRALYNALGFAQANFSND----M----ERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDI 261 (653)
Q Consensus 190 ~~vr~~a~~~l~~~~~~~~~~~~~~----~----~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l 261 (653)
...|..+++.+..+++.....+... . .++.+.+.+......+++.+...+++.+..+...+.+.++..++-+
T Consensus 36 ~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~ 115 (168)
T PF12783_consen 36 ERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVF 115 (168)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777776544333311 1 1245667777666556689999999999999988888787777777
Q ss_pred HHHHHH-HhhcCC--hhHHHHHHHhHHHhhH
Q 006253 262 FNITAK-AVREDE--EPVALQAIEFWSSVCD 289 (653)
Q Consensus 262 ~~~~~~-~~~~~~--~~~~~~a~~~~~~~~~ 289 (653)
++.++. .+.... ...|..+++++..++.
T Consensus 116 l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 116 LSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 777766 444332 3577788888888886
No 315
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=70.61 E-value=65 Score=27.68 Aligned_cols=111 Identities=18% Similarity=0.183 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccchh-chHHHHHHHHHHHHHhcccccHHHHHHHH
Q 006253 472 NVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGES-RLRTAAYETLNEVVRCSTDETAPMVMQLV 550 (653)
Q Consensus 472 ~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~l~ 550 (653)
.+-..+..++..++-++. ...+.|.+-.++..-..-+...+.... .-+...+..+..+.+.++.-+.||+..++
T Consensus 36 ~vE~~v~~~~~~lV~KLn-----E~~FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~ll 110 (153)
T PF08146_consen 36 EVESSVISAFVSLVLKLN-----EATFRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYFSYLL 110 (153)
T ss_pred HHHHHHHHHHHHHHHHcc-----cchhHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777777765 467888888888877664443321112 22346777888888988888999999999
Q ss_pred HHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHhHHHHHHH
Q 006253 551 PLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQ 590 (653)
Q Consensus 551 ~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~ 590 (653)
+...+.|+...... .++......++..++.++.....
T Consensus 111 ~~~~~~L~~~~~~~---~~~~~~~~~L~~~vL~~L~~~F~ 147 (153)
T PF08146_consen 111 DNAVDLLKQFNSSK---TESKSKSWELWRLVLSTLQKCFL 147 (153)
T ss_pred HHHHHHHHHhhhcc---ccchhhHHHHHHHHHHHHHHHHh
Confidence 99999888753211 11100112455556666655443
No 316
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=70.24 E-value=47 Score=27.13 Aligned_cols=73 Identities=14% Similarity=0.205 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccchhhHHHHHHHHHHH
Q 006253 405 PLVNIALNFMLTALMQ-DPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYF 483 (653)
Q Consensus 405 ~~l~~l~~~ll~~l~~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~al~~ 483 (653)
.++..++|.+...+ + ...+..|.++.-.++.++...+ ...+.+..++..+......... ...+..++..
T Consensus 2 ~~l~~lLP~l~~~L-~~s~~~d~~~a~ymIl~~La~k~~--------L~~~~l~~l~~~i~~~~~~~~~-~~~~l~~L~~ 71 (121)
T PF12397_consen 2 DILPRLLPFLLKGL-KSSSSPDLQAAAYMILSVLASKVP--------LSDEVLNALMESILKNWTQETV-QRQALICLIV 71 (121)
T ss_pred cHHHHHHHHHHHHH-ccCCcHHHHHHHHHHHHHHHhhcC--------CcHHHHHHHHHHHHhccccchh-HHHHHHHHHH
Confidence 35788999999999 7 7788999999999999998775 2456666666666665553222 4567777777
Q ss_pred HHhc
Q 006253 484 LAQG 487 (653)
Q Consensus 484 ~~~~ 487 (653)
++..
T Consensus 72 l~q~ 75 (121)
T PF12397_consen 72 LCQS 75 (121)
T ss_pred HHHc
Confidence 7754
No 317
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.27 E-value=1.1e+02 Score=29.45 Aligned_cols=106 Identities=17% Similarity=0.217 Sum_probs=61.7
Q ss_pred ChhHHHHHHHHhcCCChHHHHHHHHHHHHHHhh-------CcchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhh
Q 006253 1 MSAEVTQILLNAQSVDGTVRKQAEESLKQYQEQ-------NLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQH 73 (653)
Q Consensus 1 m~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~-------~~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~ 73 (653)
|..++..+..=+.++++.+|+.|-+.+-.+... +....+..+.+++.+... .+. |+..+-|.-.+.
T Consensus 1 m~s~l~elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~---~~~-a~~alVnlsq~~--- 73 (353)
T KOG2973|consen 1 MTSELVELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP---AEP-AATALVNLSQKE--- 73 (353)
T ss_pred CchHHHHHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc---ccH-HHHHHHHHHhhH---
Confidence 666888899999999999999999888655332 224456667777775322 333 444444433211
Q ss_pred hHHHhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhh
Q 006253 74 RKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIE 123 (653)
Q Consensus 74 ~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~ 123 (653)
.+..-....+...++..+.++...+-..+|..++.+++-+
T Consensus 74 ----------~l~~~ll~~~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~ 113 (353)
T KOG2973|consen 74 ----------ELRKKLLQDLLKVLMDMLTDPQSPLADLICMLLSNLSRDD 113 (353)
T ss_pred ----------HHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHhccCc
Confidence 0000011113334444455666666677777777776543
No 318
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=68.87 E-value=54 Score=27.36 Aligned_cols=76 Identities=16% Similarity=0.150 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc--h-hhHHHHHHHHHHHH
Q 006253 408 NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD--V-PNVAEKACGALYFL 484 (653)
Q Consensus 408 ~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d--~-~~v~~~a~~al~~~ 484 (653)
...+..|.+.+ ++++|.+...|+..+..+.+.++.. ....---..++..+...+.+ . +.|+.++...+...
T Consensus 36 k~a~r~l~krl-~~~n~~v~l~AL~lLe~~vkNcg~~-----f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W 109 (133)
T smart00288 36 KDAVRLLKKRL-NNKNPHVALLALTLLDACVKNCGSK-----FHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEW 109 (133)
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHCCHH-----HHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHH
Confidence 34577888899 9999999999999999999988631 11111223455566665553 2 44899988888888
Q ss_pred Hhccc
Q 006253 485 AQGFE 489 (653)
Q Consensus 485 ~~~~~ 489 (653)
...+.
T Consensus 110 ~~~f~ 114 (133)
T smart00288 110 ADAFK 114 (133)
T ss_pred HHHHc
Confidence 88764
No 319
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=68.57 E-value=91 Score=37.73 Aligned_cols=155 Identities=20% Similarity=0.210 Sum_probs=90.4
Q ss_pred CccchHHHHHHHHHhccc-hhhHHHHHHHHHHHHHhcccCCCCCCCCCch-hHHHHHHHHHHhccccccchhchHHHHHH
Q 006253 452 NQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTP-FFQEIVQALLTVTHREDAGESRLRTAAYE 529 (653)
Q Consensus 452 ~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~-~l~~i~~~L~~~l~~~~~~~~~~~~~~~~ 529 (653)
..+|++.++...-..+.+ ++.|+.-++.....+...+ .. +-..++..|+..+.+.. +.++ ..+++
T Consensus 429 L~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~f----------ds~~qqeVv~~Lvthi~sg~--~~ev-~~aL~ 495 (1426)
T PF14631_consen 429 LKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEF----------DSYCQQEVVGALVTHIGSGN--SQEV-DAALD 495 (1426)
T ss_dssp HTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-----------HHHHHHHHHHHHHHHHH----HHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhc----------cchhHHHHHHHHHHHHcCCc--HHHH-HHHHH
Confidence 467888888888888886 6888888888888777653 33 34688888888886544 3455 58999
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHhHHHHHHHHhCCCcchhhHhhHhHHHH
Q 006253 530 TLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQM 609 (653)
Q Consensus 530 ~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~i 609 (653)
+|..++...+....||.. ++..++..+.+. + ...+|. +++.+.+++..-+.. -+.....+
T Consensus 496 vL~~L~~~~~~~l~~fa~-~l~giLD~l~~L------s------~~qiR~-lf~il~~La~~~~~~------~s~i~del 555 (1426)
T PF14631_consen 496 VLCELAEKNPSELQPFAT-FLKGILDYLDNL------S------LQQIRK-LFDILCTLAFSDSSS------SSSIQDEL 555 (1426)
T ss_dssp HHHHHHHH-HHHHHHTHH-HHHGGGGGGGG--------------HHHHHH-HHHHHHHHHHHHSS---------HHHHHH
T ss_pred HHHHHHhccHHHHHHHHH-HHHHHHHHHhcC------C------HHHHHH-HHHHHHHHhcCCccc------chhhHHHH
Confidence 999999877766666533 222233333321 1 113453 677788877665443 23344455
Q ss_pred HHHHHHHHhccCcchhhhHHHHHHH--HHHHhcc
Q 006253 610 MGLFLRVFAIRSATAHEEAMLAIGA--LAYATGL 641 (653)
Q Consensus 610 ~~~l~~~l~~~~~~~~e~~~~~~~~--l~~~~~~ 641 (653)
.-.+-+.|...+... .-++.||. ++..++.
T Consensus 556 ~ivIRKQLss~~~~~--K~~GIIGav~~i~~la~ 587 (1426)
T PF14631_consen 556 HIVIRKQLSSSNPKY--KRIGIIGAVMMIKHLAA 587 (1426)
T ss_dssp HHHHHHHHT-SSHHH--HHHHHHHHHHHHHHTT-
T ss_pred HHHHHHhhcCCcHHH--HHHhHHHHHHHHHHHHH
Confidence 555556666554433 33344443 3444443
No 320
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=68.23 E-value=23 Score=33.08 Aligned_cols=116 Identities=12% Similarity=0.111 Sum_probs=59.8
Q ss_pred HHHHHHHhhcCC-ChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhh-
Q 006253 132 LIGALLSNIHQL-PPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQA- 209 (653)
Q Consensus 132 l~~~l~~~l~~~-~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~- 209 (653)
+.|.|...-++. -+..|-.++.+++.+++.-+++.+.---..+++|.++..+. ..+.--|..|.-.+..++..-.+
T Consensus 96 LyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me--~GselSKtvAtfIlqKIL~dd~GL 173 (262)
T PF04078_consen 96 LYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIME--FGSELSKTVATFILQKILLDDVGL 173 (262)
T ss_dssp GHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHH--HS-HHHHHHHHHHHHHHHHSHHHH
T ss_pred ehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHH--hccHHHHHHHHHHHHHHHcchhHH
Confidence 456653332221 35678999999999998654554411112578999988887 45566677777777776642100
Q ss_pred -hcCChhH----HHHHHHHH-HhhhcCCcHHHHHHHHHHHHHHHHH
Q 006253 210 -NFSNDME----RDYIMRVV-CEATLSPEVKIRQAAFECLVAISST 249 (653)
Q Consensus 210 -~~~~~~~----~~~il~~l-~~~~~~~~~~~~~~~~~~l~~l~~~ 249 (653)
....... ...++..+ .....++++.+.+.++.|..++.++
T Consensus 174 ~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdn 219 (262)
T PF04078_consen 174 NYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDN 219 (262)
T ss_dssp HHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTS
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccC
Confidence 0000000 01122222 2233456666666666666666654
No 321
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=67.65 E-value=31 Score=31.07 Aligned_cols=65 Identities=18% Similarity=0.166 Sum_probs=45.6
Q ss_pred HHHHhhhcCcchhhHHHHHHHHHH-hhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhc
Q 006253 370 PFVEENITKQEWRQREAATYAFGS-ILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLH 442 (653)
Q Consensus 370 ~~l~~~l~~~~~~~r~aal~~l~~-i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~ 442 (653)
+.+.....|++.-.|.+++.++.. +.. ..+.+.++..+...+ +|++..|+.+..|+|..++...+
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~-------~~~~~~~l~~~~~~~-~d~~~~Vqkav~w~L~~~~~~~~ 173 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK-------ETDFDLLLEIIERLL-HDEEYFVQKAVGWALREYGKKDP 173 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh-------cccHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHhhCH
Confidence 667778888774455555444443 433 123566677777777 88999999999999999987643
No 322
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=67.62 E-value=15 Score=31.77 Aligned_cols=135 Identities=13% Similarity=0.205 Sum_probs=72.0
Q ss_pred HHHHhhcC--CChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhh----
Q 006253 135 ALLSNIHQ--LPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQ---- 208 (653)
Q Consensus 135 ~l~~~l~~--~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~---- 208 (653)
.++..+.. ..+++|-.++-++..+.+.. ++.+ ...+...+. ..+...+.+ -...++.++..+....+
T Consensus 7 ~lL~~L~~~~~~~~~r~~a~v~l~k~l~~~-~~~~-~~~~~~~i~---~~~~~~~~d--~~i~~~~~l~~lfp~~~dv~~ 79 (157)
T PF11701_consen 7 TLLTSLDMLRQPEEVRSHALVILSKLLDAA-REEF-KEKISDFIE---SLLDEGEMD--SLIIAFSALTALFPGPPDVGS 79 (157)
T ss_dssp HHHHHHHCTTTSCCHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHH---HHHCCHHCC--HHHHHHHHHHHHCTTTHHHHH
T ss_pred HHHHHhcccCCCHhHHHHHHHHHHHHHHHh-HHHH-HHHHHHHHH---HHHccccch--hHHHHHHHHHHHhCCCHHHHH
Confidence 34444432 46678888888888886443 3322 223333332 233311223 33446666666554332
Q ss_pred hhcCChhHHHHHHHHHHhhhc--CCcHHHHHHHHHHHHHHHHHhHHhhHHh-HHHHHHHHHHHhhc-CChh-HHHHHHH
Q 006253 209 ANFSNDMERDYIMRVVCEATL--SPEVKIRQAAFECLVAISSTYYEKLAPY-IQDIFNITAKAVRE-DEEP-VALQAIE 282 (653)
Q Consensus 209 ~~~~~~~~~~~il~~l~~~~~--~~~~~~~~~~~~~l~~l~~~~~~~~~~~-l~~l~~~~~~~~~~-~~~~-~~~~a~~ 282 (653)
..+.. +.+++.+...+. .++..+...+++++..-+.+.. -+.+ ....++++-...+. .++. +|..|.-
T Consensus 80 ~l~~~----eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~--~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v 152 (157)
T PF11701_consen 80 ELFLS----EGFLESLLPLASRKSKDRKVQKAALELLSAACIDKS--CRTFISKNYVSWLKELYKNSKDDSEIRVLAAV 152 (157)
T ss_dssp HHCCT----TTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHH--HHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHH
T ss_pred HHHhh----hhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHH--HHHHHHHHHHHHHHHHHccccchHHHHHHHHH
Confidence 22322 346677776666 5788888889998887555432 2222 34566666666653 4444 6666553
No 323
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=67.19 E-value=77 Score=26.79 Aligned_cols=81 Identities=4% Similarity=0.060 Sum_probs=54.6
Q ss_pred chHHHHHHHHHhcc-c-hhhHHHHHHHHHHHHHhcccCCCCCCCCCchh--HHHHHHH-HHHhccccccchhchHHHHHH
Q 006253 455 NCQQIISVLLQSMK-D-VPNVAEKACGALYFLAQGFEDAISPSSPLTPF--FQEIVQA-LLTVTHREDAGESRLRTAAYE 529 (653)
Q Consensus 455 ~~~~il~~l~~~l~-d-~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~--l~~i~~~-L~~~l~~~~~~~~~~~~~~~~ 529 (653)
.-...+..+...+. + ++.|+..|...+..++++++.. +... -..++.. |.+++......+..++..+++
T Consensus 35 ~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~------fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~ 108 (141)
T cd03565 35 GPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHR------FHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLA 108 (141)
T ss_pred cHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHH------HHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHH
Confidence 44567777777776 3 6889999999999999998642 2211 1356665 666665322112467888888
Q ss_pred HHHHHHHhcccc
Q 006253 530 TLNEVVRCSTDE 541 (653)
Q Consensus 530 ~l~~l~~~~~~~ 541 (653)
.+.......+.+
T Consensus 109 li~~W~~~f~~~ 120 (141)
T cd03565 109 LIQAWADAFRGS 120 (141)
T ss_pred HHHHHHHHhCCC
Confidence 888888777654
No 324
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=67.18 E-value=2.4e+02 Score=32.52 Aligned_cols=59 Identities=12% Similarity=0.137 Sum_probs=52.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q 006253 187 ESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISST 249 (653)
Q Consensus 187 ~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~ 249 (653)
|-.+++|.-++..|+-|+...++.|.. +.++.++.-.+.|.+.+||..++++|..+.+.
T Consensus 298 DV~~~IRaiCiqeLgiWi~~yP~~Fl~----dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~ 356 (1048)
T KOG2011|consen 298 DVDPDIRAICIQELGIWIKSYPEIFLS----DSYLKYIGWTLSDKNGTVRLRCLKALIKLYEK 356 (1048)
T ss_pred cCchHHHHHHHHHHHHHHHhccHHHhc----chHHHHhcceeecCccHHHHHHHHHHHHHHhc
Confidence 789999999999999999888877754 46888888888999999999999999999887
No 325
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=65.50 E-value=2e+02 Score=30.96 Aligned_cols=186 Identities=10% Similarity=0.131 Sum_probs=100.3
Q ss_pred HHHHhcCCC--ChHHHHHHHHHHHHHHh----h---hcCCCCCchHHHHHHHhhcC--CChhHHHHHHHHHHHHHhhhcc
Q 006253 96 FILKTLSSP--AHDARSTASQVVAKVAG----I---ELPHKQWPELIGALLSNIHQ--LPPHTKQATLETLGYICEEVSS 164 (653)
Q Consensus 96 ~ll~~l~~~--~~~vr~~~~~~l~~ia~----~---~~~~~~~~~l~~~l~~~l~~--~~~~~~~~~l~~l~~l~~~~~~ 164 (653)
.+-+.+... +..++.+.|+++..|.. . +..+..|.+.+..+...+.. ..+.....++-....++-..++
T Consensus 133 ~l~~~f~~~h~~~~ik~A~~~~l~~lLlPvA~~~~~evn~P~W~~~v~~i~~~~~~~~~K~khw~~afPL~t~lLCvS~~ 212 (552)
T PF14222_consen 133 SLAKFFLEAHKKSDIKHAYCEVLVELLLPVAATATAEVNHPKWKEAVETIYPRAAKMMSKPKHWNVAFPLVTTLLCVSPK 212 (552)
T ss_pred HHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHhcCcH
Confidence 334444333 46799999999888653 1 11224787777776555432 1355556667666666555545
Q ss_pred cccchhhHh-HHHHHHHhcccCCCCCHHHHHHHHHHHHHHHH-hh-hhhcCChh----HHHHHHHHHHhhhc----CCcH
Q 006253 165 DAVEQDHVN-KILTAVVQGMNASESNNDVRLAATRALYNALG-FA-QANFSNDM----ERDYIMRVVCEATL----SPEV 233 (653)
Q Consensus 165 ~~~~~~~~~-~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~-~~-~~~~~~~~----~~~~il~~l~~~~~----~~~~ 233 (653)
+.+ ..+.. .++..+...++ |. ..|..++.|+.+++= |+ -...+... -.+.+++.++..-+ ..|.
T Consensus 213 e~F-~~~W~~~~i~~~~~klK--dk--~~r~~~l~~l~RLlWvYL~~r~~Es~n~T~krL~~i~~~lfp~~kk~~i~~D~ 287 (552)
T PF14222_consen 213 EFF-LSNWLPSLIESLISKLK--DK--ETRPVALECLSRLLWVYLVYRCPESLNNTTKRLDSIFKLLFPKGKKGWIPRDP 287 (552)
T ss_pred HHH-HHHHHHHHHHHHHhhcC--Ch--hhhHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHccCCCCcccCCCh
Confidence 566 45566 57777776776 44 788999999999873 44 11111111 11455665553222 1234
Q ss_pred HHHHHHHHHHHHHHHHhHHhhHHhHHH-HHHHHHHHh-----hcCChhHHHHHHHhHHHhhH
Q 006253 234 KIRQAAFECLVAISSTYYEKLAPYIQD-IFNITAKAV-----REDEEPVALQAIEFWSSVCD 289 (653)
Q Consensus 234 ~~~~~~~~~l~~l~~~~~~~~~~~l~~-l~~~~~~~~-----~~~~~~~~~~a~~~~~~~~~ 289 (653)
+.....++.+.-++..++++. +++ +++.+-... ...+++--..++.....+..
T Consensus 288 ~~~~~lv~ii~~I~~~~~df~---~~~iI~~LL~~~~~~s~~~~l~pERm~IgIRA~l~Il~ 346 (552)
T PF14222_consen 288 EPLNPLVQIIRFIGYKHLDFA---FRNIIFPLLNVSFNGSSLENLNPERMIIGIRAFLAILS 346 (552)
T ss_pred hhhhhHHHHHHhHhhhCcchH---HHHHHHHHHccccccccccccChhHHHHHHHHHHHHHH
Confidence 445555566665555555432 233 233222221 12345544556665555554
No 326
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=64.47 E-value=1.8e+02 Score=30.20 Aligned_cols=58 Identities=21% Similarity=0.188 Sum_probs=44.6
Q ss_pred hhhHHHHHHHHHHhhcCCCCCcchHHHHHHHH-HHHHHhcCCCchHHHHHHHHHHHHHHhhhcc
Q 006253 381 WRQREAATYAFGSILEGPSPEKLVPLVNIALN-FMLTALMQDPNNHVKDTTAWTLGRMFEFLHG 443 (653)
Q Consensus 381 ~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~-~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~ 443 (653)
.+.|-+|..+||.++....... +..++. .++.+| ++++..-|..+.-++..++.....
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~----~~~~~~~~L~~~L-~S~sa~qR~~aalvl~ewa~~~~~ 159 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESS----LQEIFQPLLLPYL-NSPSATQRLLAALVLEEWAKACKE 159 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccch----HHHHHHHHHHHHh-cchhHHHHHHHHHHHHHHHHhCcc
Confidence 5789999999999887653232 233344 577888 999999999999999999988763
No 327
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=64.39 E-value=18 Score=23.61 Aligned_cols=35 Identities=20% Similarity=0.222 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhh
Q 006253 89 VKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIE 123 (653)
Q Consensus 89 ~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~ 123 (653)
..+++|+.+++.|..+++..|.++..+++++....
T Consensus 4 ~~eYLKNvl~~fl~~~~~~~~~~llpvi~tlL~fs 38 (46)
T PF01465_consen 4 NLEYLKNVLLQFLESREPSEREQLLPVIATLLKFS 38 (46)
T ss_dssp HHHHHHHHHHHHHTTSS---HHHHHHHHHHHTT--
T ss_pred hHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHCCC
Confidence 56789999999999988888999999999887654
No 328
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.55 E-value=1.6e+02 Score=28.83 Aligned_cols=135 Identities=14% Similarity=0.219 Sum_probs=74.8
Q ss_pred HHHHHHHhcCC-CchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccchhhHHHHHHHHHHHHHhccc
Q 006253 411 LNFMLTALMQD-PNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFE 489 (653)
Q Consensus 411 ~~~ll~~l~~d-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~al~~~~~~~~ 489 (653)
+..++.++ .| ....+|..+-.|++-+...-++......-......+.++....+. .++|.|...++.++..++-...
T Consensus 285 l~tl~~~i-~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h-~~~p~Vi~~~~a~i~~l~LR~p 362 (461)
T KOG4199|consen 285 LDTLLRCI-DDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRH-SDDPLVIQEVMAIISILCLRSP 362 (461)
T ss_pred HHHHHHHH-hhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHc-CCChHHHHHHHHHHHHHHhcCc
Confidence 45566677 65 455677666666665555444321110001122334444444443 2478898999999988875432
Q ss_pred CCCCCCCCCchhHH-----HHHHHHHHhccccccchhchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Q 006253 490 DAISPSSPLTPFFQ-----EIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELH 558 (653)
Q Consensus 490 ~~~~~~~~l~~~l~-----~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~ 558 (653)
+.-..+++ -.++.+.. .. . ...++..++..+-.++.+..+...+++..=...++..-.
T Consensus 363 ------dhsa~~ie~G~a~~avqAmka-hP--~--~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~ 425 (461)
T KOG4199|consen 363 ------DHSAKAIEAGAADLAVQAMKA-HP--V--AAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAK 425 (461)
T ss_pred ------chHHHHHhcchHHHHHHHHHh-Cc--H--HHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHH
Confidence 22222222 22333322 21 1 246788999999999988877777877765555555443
No 329
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=61.97 E-value=1.2e+02 Score=27.25 Aligned_cols=109 Identities=14% Similarity=0.136 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCC-CCCchHHHHHHHhhcCCCh--hHHHHHHHHHHHHHhhhccc
Q 006253 89 VKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPH-KQWPELIGALLSNIHQLPP--HTKQATLETLGYICEEVSSD 165 (653)
Q Consensus 89 ~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~-~~~~~l~~~l~~~l~~~~~--~~~~~~l~~l~~l~~~~~~~ 165 (653)
....+...+++.....-..||..|+.++..+.....+. ...| -.+.|...+..+.. .....+-.++..++..+.
T Consensus 4 ~~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~~~ip-~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~-- 80 (193)
T PF12612_consen 4 LVQQIIGGLLRQAAEKIDRVREVAGKCLQRLLHSQDPTIPHIP-HREELQDIFPSESEASLNWSSSSEYFPRLVKLLD-- 80 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCC-cHHHHHHHcccccccccccCCHHHHHHHHHHHhc--
Confidence 33444555555555556799999999999999443231 1223 33555555443321 112233444444443331
Q ss_pred ccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHH
Q 006253 166 AVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNAL 204 (653)
Q Consensus 166 ~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~ 204 (653)
+ ..+...++.-++-... ..+..+.+.+..+|..++
T Consensus 81 -~-~~y~~~ll~Glv~S~G--~~tesl~~~s~~AL~~~~ 115 (193)
T PF12612_consen 81 -L-PEYRYSLLSGLVVSAG--GLTESLVRASSAALLSYL 115 (193)
T ss_pred -c-HHHHHHHHhHHHhcCC--CCchhHHHHHHHHHHHHH
Confidence 1 2334455555555554 456677777777777754
No 330
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.83 E-value=71 Score=32.64 Aligned_cols=138 Identities=9% Similarity=0.138 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhhhcCCCCCc------hHHHHHHHhhcCC--ChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhc
Q 006253 111 TASQVVAKVAGIELPHKQWP------ELIGALLSNIHQL--PPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQG 182 (653)
Q Consensus 111 ~~~~~l~~ia~~~~~~~~~~------~l~~~l~~~l~~~--~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~ 182 (653)
-...|+|.+|....|.-.|. +++|.+.+.++-. ..+..-.....+++++.......+ -.-..+++.+++.
T Consensus 521 F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~L--la~a~~i~tlieL 598 (791)
T KOG1222|consen 521 FGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARL--LAPAKLIDTLIEL 598 (791)
T ss_pred HHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHH--hCccccHHHHHHH
Confidence 45677888887665544663 5677777776533 122333334445554443222211 0113466667777
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHhhh--hhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHh
Q 006253 183 MNASESNNDVRLAATRALYNALGFAQ--ANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEK 253 (653)
Q Consensus 183 l~~~~~~~~vr~~a~~~l~~~~~~~~--~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 253 (653)
+++-..+.+.-...+..+.+++.+-. ..... ....-..++.++.+.+.++|+-+=.+|--+++...++
T Consensus 599 L~a~QeDDEfV~QiiyVF~Q~l~He~tr~~mik---et~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~EW 668 (791)
T KOG1222|consen 599 LQACQEDDEFVVQIIYVFLQFLKHELTRRLMIK---ETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKEW 668 (791)
T ss_pred HHhhcccchHHHHHHHHHHHHHHHHHHHHHHHh---hccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHHH
Confidence 66434455555555555555543310 00000 0223446677788888888887777777777655443
No 331
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=60.89 E-value=87 Score=25.22 Aligned_cols=75 Identities=16% Similarity=0.216 Sum_probs=51.6
Q ss_pred CCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhH-hH-HHHHHHh----cccCCCCCHHHHHHHHHHH
Q 006253 127 KQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHV-NK-ILTAVVQ----GMNASESNNDVRLAATRAL 200 (653)
Q Consensus 127 ~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~-~~-l~~~l~~----~l~~~~~~~~vr~~a~~~l 200 (653)
....+.+..|...+.+.++.+...++.+|..++++.+ ..+ ...+ .. .+..++. .....+.+..||..+...+
T Consensus 33 ~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g-~~f-~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~ 110 (115)
T cd00197 33 VGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCG-ERF-HQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELV 110 (115)
T ss_pred ccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHcc-HHH-HHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHH
Confidence 3567899999999999999999999999999999984 333 2221 11 1111211 1222256889999998887
Q ss_pred HHH
Q 006253 201 YNA 203 (653)
Q Consensus 201 ~~~ 203 (653)
..+
T Consensus 111 ~~w 113 (115)
T cd00197 111 QLW 113 (115)
T ss_pred HHH
Confidence 764
No 332
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=60.79 E-value=1.8e+02 Score=28.94 Aligned_cols=159 Identities=16% Similarity=0.088 Sum_probs=80.0
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCC----CCCchHHHHHHHhh----cCCChhHHHHHHHHHHHHHhh-
Q 006253 91 AQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPH----KQWPELIGALLSNI----HQLPPHTKQATLETLGYICEE- 161 (653)
Q Consensus 91 ~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~----~~~~~l~~~l~~~l----~~~~~~~~~~~l~~l~~l~~~- 161 (653)
..+.+.+.++|.+..+.+|+.-..+++.+.. ..+. ....+++|.|.+.+ .++.+....+.+.+...++-.
T Consensus 60 ~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~-~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~ 138 (339)
T PF12074_consen 60 KKVVDAFKKGLKDKKPPVRRAWLLCLGEALW-ESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALS 138 (339)
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHh-hccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhc
Confidence 4566677789999988899999999999876 1111 12344555555554 444333221111111111110
Q ss_pred -hcccccch-----------hh-HhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhh
Q 006253 162 -VSSDAVEQ-----------DH-VNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEAT 228 (653)
Q Consensus 162 -~~~~~~~~-----------~~-~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~ 228 (653)
...+.++. +. .--+-+.+.+.+. +.+-....++++..+............ ...+-+.+.-.+
T Consensus 139 ~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~----~~~d~~w~~~al~~~~~~~~~~~~~~~-~~~~~~a~i~ll 213 (339)
T PF12074_consen 139 SWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLA----SEEDLCWLLRALEALLSDHPSELSSDK-SSAWAQAFIYLL 213 (339)
T ss_pred cccchhhhhhhhhhhhhccCCCcchhcCHHHHhccC----CHhHHHHHHHHHHHHHhcchhhhhhhH-HHHHHHHHHHHH
Confidence 00011100 00 0001112233322 223333455555555443332222211 244555555555
Q ss_pred cCC--cHHHHHHHHHHHHHHHHHhHHhhH
Q 006253 229 LSP--EVKIRQAAFECLVAISSTYYEKLA 255 (653)
Q Consensus 229 ~~~--~~~~~~~~~~~l~~l~~~~~~~~~ 255 (653)
.++ .+++|+.+++.+.++....+..+.
T Consensus 214 ~s~~~~~~vR~~A~~~l~~l~~~~~~~l~ 242 (339)
T PF12074_consen 214 CSSNVSWKVRRAALSALKKLYASNPELLS 242 (339)
T ss_pred HcCCCCHHHHHHHHHHHHHHHHhChHHHH
Confidence 555 899999999999999988876533
No 333
>PF14961 BROMI: Broad-minded protein
Probab=60.36 E-value=1e+02 Score=35.73 Aligned_cols=68 Identities=16% Similarity=0.252 Sum_probs=53.5
Q ss_pred HHHHHhcCCCC-hHHHHHHHHHHHHHHhhhcC-CCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhh
Q 006253 95 SFILKTLSSPA-HDARSTASQVVAKVAGIELP-HKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEV 162 (653)
Q Consensus 95 ~~ll~~l~~~~-~~vr~~~~~~l~~ia~~~~~-~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~ 162 (653)
+.+++.+.-.. .+||..|.+.+..+---+.. ...|+.+-..|...+.|+|+...+.+++.........
T Consensus 164 q~i~d~ld~~~P~evR~eAlq~Lc~~p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssS 233 (1296)
T PF14961_consen 164 QLIADKLDPGQPKEVRLEALQILCSAPPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKMFSSS 233 (1296)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHhcCChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCC
Confidence 44555555444 59999999999887554432 2589999999999999999999999999988877655
No 334
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=60.10 E-value=65 Score=29.27 Aligned_cols=80 Identities=13% Similarity=0.142 Sum_probs=52.0
Q ss_pred HHHHHhhcC-CCchhchHHHHHhhhcCcc-hhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHH
Q 006253 353 LGLVARTVG-DDIVPLVMPFVEENITKQE-WRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTT 430 (653)
Q Consensus 353 L~~l~~~~~-~~~~~~l~~~l~~~l~~~~-~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a 430 (653)
++.++.... -...|.+++.......+.+ |..|-+....+.-.-++. +...+++.+-..+ +|.+..|+.+.
T Consensus 103 vD~la~~~V~~~~~~~li~~~~a~~~~~~~w~rraaiv~~l~~~k~~~-------~~~~if~i~E~~l-~d~e~fV~KAi 174 (222)
T COG4912 103 VDTLANHFVGIPLWPDLIEEWAADAEEDNRWERRAAIVHQLVYKKKTL-------DLLEIFEIIELLL-GDKEFFVQKAI 174 (222)
T ss_pred HHHHHHHhhccccCHHHHHHHHhccccchHHHHHHHHHHHHHHhcCcc-------chhHHHHHHHHHc-cChHHHHHHHH
Confidence 344554443 3556666766644444444 555555555665554442 1235677777778 99999999999
Q ss_pred HHHHHHHHhh
Q 006253 431 AWTLGRMFEF 440 (653)
Q Consensus 431 ~~~l~~~~~~ 440 (653)
-|+|.+++..
T Consensus 175 gWaLrq~~k~ 184 (222)
T COG4912 175 GWALRQIGKH 184 (222)
T ss_pred HHHHHHHHhh
Confidence 9999999983
No 335
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=59.19 E-value=15 Score=22.59 Aligned_cols=26 Identities=12% Similarity=0.104 Sum_probs=12.9
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHH
Q 006253 133 IGALLSNIHQLPPHTKQATLETLGYI 158 (653)
Q Consensus 133 ~~~l~~~l~~~~~~~~~~~l~~l~~l 158 (653)
++.|.+.+.++++.++..++.+|+.+
T Consensus 14 i~~L~~ll~~~~~~i~~~a~~aL~nl 39 (41)
T smart00185 14 LPALVELLKSEDEEVVKEAAWALSNL 39 (41)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 44444444444555555555555443
No 336
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=58.50 E-value=8.8 Score=21.53 Aligned_cols=14 Identities=29% Similarity=0.489 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHh
Q 006253 426 VKDTTAWTLGRMFE 439 (653)
Q Consensus 426 vr~~a~~~l~~~~~ 439 (653)
||.+|.++||++..
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 78999999998865
No 337
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=58.14 E-value=82 Score=28.37 Aligned_cols=78 Identities=13% Similarity=0.152 Sum_probs=51.9
Q ss_pred CccchHHHHHHHHHhccc-hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHH
Q 006253 452 NQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYET 530 (653)
Q Consensus 452 ~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~ 530 (653)
...|...++..++...+. ...+...+..||..++.... .-...+..++..++.++.+...+ ..+-.-++++
T Consensus 81 ~~~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~~~~-------~~~~~~~~v~~~l~~il~~~~~~-dRv~vP~l~t 152 (193)
T PF12612_consen 81 LPEYRYSLLSGLVVSAGGLTESLVRASSAALLSYLRELS-------DSPEELEQVLSDLLSILKENLRN-DRVVVPLLKT 152 (193)
T ss_pred cHHHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHHHhh-------cCHHHHHHHHHHHHHHHHHhCCC-CCeeecHHHH
Confidence 456888888888888876 56777788888888886421 12345666777777777654432 2333467777
Q ss_pred HHHHHHh
Q 006253 531 LNEVVRC 537 (653)
Q Consensus 531 l~~l~~~ 537 (653)
+..+...
T Consensus 153 l~~Ll~~ 159 (193)
T PF12612_consen 153 LDFLLSS 159 (193)
T ss_pred HHHHHhC
Confidence 7777765
No 338
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=57.78 E-value=1.9e+02 Score=28.19 Aligned_cols=149 Identities=13% Similarity=0.177 Sum_probs=76.0
Q ss_pred hHHHHHHHHHhccc-hhhHHHHHHHHHHHHHhcccCCCCCCCCC-chhHHHHHHHHHHhccccccchhchHHHHHHHHHH
Q 006253 456 CQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPL-TPFFQEIVQALLTVTHREDAGESRLRTAAYETLNE 533 (653)
Q Consensus 456 ~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~~~~~~~~~~~~l-~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~ 533 (653)
+..+++.+.+.+.. .+. ....-+..+|+.+.+. +... ....-.++..|.+..... ..+|..++..+-.
T Consensus 63 le~vlnsi~sLi~~~~~e---~~e~~v~a~~ekva~q---~n~~~~~l~L~vLsnLfn~~d~~----~~aR~~Vy~~lv~ 132 (378)
T KOG2753|consen 63 LECVLNSIVSLIKNAPPE---KVEEMVKAICEKVAKQ---PNDKTASLRLQVLSNLFNGVDKP----TPARYQVYMSLVT 132 (378)
T ss_pred HHHHHHHHHHHHHhCCHH---HhHHHHHHHHHHHhcC---ccCCCcccHHHHHHHHHhccCCC----chHHHHHHHHHHH
Confidence 77888888777764 232 2222233444443321 2222 223444455555444433 3478788888888
Q ss_pred HHHhccc--ccHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHhHHHHHHHHhCCCcchhhHhhHhHHHHHH
Q 006253 534 VVRCSTD--ETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMG 611 (653)
Q Consensus 534 l~~~~~~--~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~i~~ 611 (653)
++..++- ...|-+.+ ++..++-|.- +.+|. | .++..+........+. .-...+|.
T Consensus 133 la~~~~~~~~i~~~lk~-~~~~lkew~~-------~vedq------r-el~r~v~~al~~~k~~--------~~s~kvmt 189 (378)
T KOG2753|consen 133 LAASCKLIEYIVPNLKQ-LDDWLKEWNI-------SVEDQ------R-ELLRAVHKALKDNKSV--------DESSKVMT 189 (378)
T ss_pred HHhhcceeeeecccHHH-HHHHHHhCCC-------CHHHH------H-HHHHHHHHHHHhcchh--------hhHHHHHH
Confidence 8777662 22333332 1222232322 22232 1 1333444444443321 33556677
Q ss_pred HHHHHHhccC-cchhhhHHHHHHHHHH
Q 006253 612 LFLRVFAIRS-ATAHEEAMLAIGALAY 637 (653)
Q Consensus 612 ~l~~~l~~~~-~~~~e~~~~~~~~l~~ 637 (653)
.++.....++ .+.|++|+.|+.+...
T Consensus 190 ~lLgtyt~dnas~AredA~rcV~~av~ 216 (378)
T KOG2753|consen 190 ELLGTYTEDNASEAREDAMRCVVEAVK 216 (378)
T ss_pred HHHHHhcccchhHHHHHHHHHHHHHHc
Confidence 7777777766 5678898888877654
No 339
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=57.43 E-value=1.6e+02 Score=27.61 Aligned_cols=130 Identities=13% Similarity=0.130 Sum_probs=71.8
Q ss_pred CCCchHHHHHHHHHHHHHHhhhccCCCCccccCc---cchHHHHHHHHHhccc-hhhHHHHHHHHHHHHHhcccCCC---
Q 006253 420 QDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQ---GNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAI--- 492 (653)
Q Consensus 420 ~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~---~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~~~~~~~--- 492 (653)
+|+++.|...++.+.+.+-.....-... ..... ..+..+-..++..+.+ ++.|+..|...+..++-......
T Consensus 3 ~d~d~~v~K~~I~~~~~iy~~~~~~i~~-~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~ 81 (239)
T PF11935_consen 3 NDEDPAVVKRAIQCSTSIYPLVFRWICV-NPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDS 81 (239)
T ss_dssp T-SSHHHHHHHHHHHHHHHHHHHHHHS---HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHcC-CchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCC
Confidence 7888888888887777665432210000 00111 2233444455666665 68999999999998886543220
Q ss_pred ----------------CCCC-----CCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhcccccHHHHHHHHH
Q 006253 493 ----------------SPSS-----PLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVP 551 (653)
Q Consensus 493 ----------------~~~~-----~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~ 551 (653)
.+.. .++.-...++..|+..+..... ...+-..++.+|+.+++.=+ .|+..+++
T Consensus 82 ~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~i-~~~~~~a~insL~~Iak~RP----~~~~~Il~ 156 (239)
T PF11935_consen 82 PPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPHI-SSPLLTAIINSLSNIAKQRP----QFMSRILP 156 (239)
T ss_dssp ---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT---HHHHHHHHHHHHHHHHHSG----GGHHHHHH
T ss_pred ccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhccc-chHHHHHHHHHHHHHHHHhh----HHHHHHHH
Confidence 0001 1222345677778887776653 24555677788888877655 35555555
Q ss_pred HHHH
Q 006253 552 LIMM 555 (653)
Q Consensus 552 ~l~~ 555 (653)
.+..
T Consensus 157 ~ll~ 160 (239)
T PF11935_consen 157 ALLS 160 (239)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5544
No 340
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=57.09 E-value=2.2e+02 Score=28.59 Aligned_cols=151 Identities=16% Similarity=0.181 Sum_probs=80.6
Q ss_pred CchHHHHHHHhhcCC-ChhHHHHHHHHHHHHHhhhccccc-chhhHhHHHHHHHhcccC------------CCCCHHHHH
Q 006253 129 WPELIGALLSNIHQL-PPHTKQATLETLGYICEEVSSDAV-EQDHVNKILTAVVQGMNA------------SESNNDVRL 194 (653)
Q Consensus 129 ~~~l~~~l~~~l~~~-~~~~~~~~l~~l~~l~~~~~~~~~-~~~~~~~l~~~l~~~l~~------------~~~~~~vr~ 194 (653)
|..++..+++++..+ |+++-...+.-|.....+- ..+ +.. ...+...+.+.+.+ .-...++..
T Consensus 139 is~~~~~il~~L~~e~dWeV~s~VL~hLp~qL~Nk--~Lf~~~~-I~~L~~~Lc~~i~d~~~~~~l~~~p~~~~~~D~~~ 215 (356)
T PF03542_consen 139 ISEWFSVILQCLEHETDWEVYSYVLVHLPSQLSNK--ALFLGAD-IDQLRNALCSMICDRSFLESLSNKPTGFKRADLQV 215 (356)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhhhh--HHhccCc-HHHHHHHHHHHHhcccccccccCCCCCCCHHHHHH
Confidence 567778888888644 6666544444444333321 111 111 23333333322211 012456778
Q ss_pred HHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhcCCh
Q 006253 195 AATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEE 274 (653)
Q Consensus 195 ~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 274 (653)
....+|..++.|-.. +.. ...+.++..+...+.. ...+.++.+|.-.+-.-|..+.+.++.++..+-+... ..
T Consensus 216 ~~~~~Ls~LisYh~~-~~k-~~qd~iV~~l~~GL~s---~~a~~CI~aLtic~~EmP~s~~k~L~~iL~kLs~i~t--t~ 288 (356)
T PF03542_consen 216 CVFPVLSALISYHSH-FSK-QEQDEIVRALESGLGS---KTAKPCIHALTICCYEMPDSMKKLLPSILLKLSKIST--TP 288 (356)
T ss_pred HHHHHHHHHHHHHHh-cCH-hHHHHHHHHHHHHhcc---CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcc--ch
Confidence 888888888887542 221 2236777777665533 2234455555544444455566666666544433332 34
Q ss_pred hHHHHHHHhHHHhhH
Q 006253 275 PVALQAIEFWSSVCD 289 (653)
Q Consensus 275 ~~~~~a~~~~~~~~~ 289 (653)
.+....+||+..++.
T Consensus 289 ~~Ai~ILEFLs~L~~ 303 (356)
T PF03542_consen 289 NMAIHILEFLSSLSR 303 (356)
T ss_pred hhHHHHHHHHHHHhh
Confidence 466678899888886
No 341
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=56.54 E-value=38 Score=36.80 Aligned_cols=113 Identities=19% Similarity=0.178 Sum_probs=63.6
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHH--HHHHHHhccc-hhhHHHHHHHHHHHHHhc
Q 006253 411 LNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQI--ISVLLQSMKD-VPNVAEKACGALYFLAQG 487 (653)
Q Consensus 411 ~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~i--l~~l~~~l~d-~~~v~~~a~~al~~~~~~ 487 (653)
+|..+..| .+..+.++..|..-+..++-.-.. .+.....+ ++.|+..+.. +..|+.+||.|+.+++-.
T Consensus 235 lpe~i~mL-~~q~~~~qsnaaaylQHlcfgd~~--------ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~ 305 (717)
T KOG1048|consen 235 LPEVISML-MSQDPSVQSNAAAYLQHLCFGDNK--------IKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFG 305 (717)
T ss_pred cHHHHHHH-hccChhhhHHHHHHHHHHHhhhHH--------HHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcc
Confidence 35555666 677777888777777666542211 12222222 6777777775 789999999999999854
Q ss_pred ccCCCCCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHh
Q 006253 488 FEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRC 537 (653)
Q Consensus 488 ~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~ 537 (653)
-... ...+.----.=++.++..+.... |.++++.+...+..|-+.
T Consensus 306 ~~~~---~NKlai~~~~Gv~~l~~~Lr~t~--D~ev~e~iTg~LWNLSS~ 350 (717)
T KOG1048|consen 306 KSTD---SNKLAIKELNGVPTLVRLLRHTQ--DDEVRELITGILWNLSSN 350 (717)
T ss_pred cCCc---ccchhhhhcCChHHHHHHHHhhc--chHHHHHHHHHHhcccch
Confidence 2210 12222111122445555555433 345666555555555433
No 342
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=56.47 E-value=34 Score=30.89 Aligned_cols=57 Identities=16% Similarity=0.128 Sum_probs=49.3
Q ss_pred HHHhHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHhccC
Q 006253 580 LLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGLW 642 (653)
Q Consensus 580 ~~~~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~e~~~~~~~~l~~~~~~~ 642 (653)
.++.+++.+...+|.. ..|++.+++..+.+.-+.++-+.|+.+=.++|....++|++
T Consensus 19 ~vl~v~s~lf~~lg~~------~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe 75 (198)
T PF08161_consen 19 EVLNVLSALFEKLGER------SSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPE 75 (198)
T ss_pred HHHHHHHHHHHHHhhh------ccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHH
Confidence 4788899999999988 78899999998888887777678888899999999999964
No 343
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=56.32 E-value=2.8e+02 Score=29.74 Aligned_cols=284 Identities=15% Similarity=0.136 Sum_probs=135.6
Q ss_pred cHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCc
Q 006253 344 NIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPN 423 (653)
Q Consensus 344 ~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~ 423 (653)
+........|..+....+....+.+=.++.+++-+++.-...-+.-+.+-++.....+-...++..+. .+++.+ ..+.
T Consensus 243 ~lY~~vl~~Lctfi~~~~~s~f~eLE~~LL~~vL~~~~l~~lLa~DvWCFlaRygtaeLc~~hv~~L~-~Lik~l-p~~~ 320 (559)
T PF14868_consen 243 SLYQHVLVHLCTFIASLSPSAFPELERFLLENVLHPHFLCSLLAMDVWCFLARYGTAELCAHHVNLLA-HLIKSL-PSSS 320 (559)
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHH-HHHHHc-CCcc
Confidence 44455666677776666656777777777777778887777777666666665432122233444443 455556 3222
Q ss_pred hHHHHHHHHHHHHHHhhhccCCC-----C-ccccCccchHHHHHHHHHhccch--hhHHHHHHHHHHHHHhcccCCCCCC
Q 006253 424 NHVKDTTAWTLGRMFEFLHGSTL-----E-TPIINQGNCQQIISVLLQSMKDV--PNVAEKACGALYFLAQGFEDAISPS 495 (653)
Q Consensus 424 ~~vr~~a~~~l~~~~~~~~~~~~-----~-~~~~~~~~~~~il~~l~~~l~d~--~~v~~~a~~al~~~~~~~~~~~~~~ 495 (653)
.+ +..-...++++...+.+... . .|.........+-....+.+.+. .++..........+++.+.+. .
T Consensus 321 ~~-~~~L~~LL~Rl~~~m~~~~q~~~v~~f~p~~~~~n~~lw~~~~~~~L~~~lr~~~~~~i~~~~~~~~~~~~~~---~ 396 (559)
T PF14868_consen 321 YQ-LINLSILLRRLFFLMAPDHQSEFVQDFSPSAETENLLLWEGFPLNALSDELRKQIVQEIFTLCFAFCQKWLSP---S 396 (559)
T ss_pred hh-HhhHHHHHHHHHHhcCHHHHHHHHHhcCccccccchHHHHhccHHhCCHHHHHHHHHHHHHHHHHHHHHhccc---C
Confidence 22 22244456666555432100 0 01100111111111122233322 222233333333455544321 1
Q ss_pred CCCchhHHH---HHHHHHHhcccccc-chhchHHHHHHHHHHHHHhcc---cccHHHHHHHHHHHHHHHHHHHHhhcCCh
Q 006253 496 SPLTPFFQE---IVQALLTVTHREDA-GESRLRTAAYETLNEVVRCST---DETAPMVMQLVPLIMMELHQTLEAQKLSS 568 (653)
Q Consensus 496 ~~l~~~l~~---i~~~L~~~l~~~~~-~~~~~~~~~~~~l~~l~~~~~---~~~~~~~~~l~~~l~~~l~~~~~~~~~~~ 568 (653)
..-...++. .+..++...+.... .+..-+...+++++.+..... ..-.||++.++..++..+...++. ..+
T Consensus 397 ~~s~g~l~~~~~~LsalL~~c~~~~~~~d~~~~~~i~~ii~~lw~~~~~~~v~~~~~l~~~~~~lL~l~~~~~~~--l~~ 474 (559)
T PF14868_consen 397 SCSLGELGQLNFALSALLQVCNSSGSTIDMKDQTFIVEIISQLWSFLSSKQVSSQPYLQQTLSLLLSLLSFFIQL--LDP 474 (559)
T ss_pred CcCcchHhHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHhchhhhccchHHHHHHHHHHHHHHHHHHh--cCh
Confidence 111122333 33333333332221 123344577788888877652 223477777666666555443221 001
Q ss_pred hHHHh-H------------HHHHHHHHhHHHHHHHHhCCCcchhhHhh-HhHHHHHHHHHHHHhccCcchhhhHHHHHHH
Q 006253 569 DEREK-Q------------NEIQGLLCGCLQVIIQKLGSSEQTKYVFM-QYADQMMGLFLRVFAIRSATAHEEAMLAIGA 634 (653)
Q Consensus 569 ~~~~~-~------------~~l~~~~~~~i~~i~~~~~~~~~~~~~~~-~~~~~i~~~l~~~l~~~~~~~~e~~~~~~~~ 634 (653)
+.... . ..++-.+++.++.+++-..+.+ .. +..+.+-...-..|++++.-++.-|+++||.
T Consensus 475 ~~i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~-----~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~ 549 (559)
T PF14868_consen 475 QLIEQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPES-----DQNPVSPALSELFHMLLADRHWLLHQHALEAFGQ 549 (559)
T ss_pred HHHHHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCcc-----ccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 11000 0 0234345555555554433332 22 2445555555566777888899999999999
Q ss_pred HHHHhc
Q 006253 635 LAYATG 640 (653)
Q Consensus 635 l~~~~~ 640 (653)
+|+...
T Consensus 550 FAe~T~ 555 (559)
T PF14868_consen 550 FAERTS 555 (559)
T ss_pred HhccCC
Confidence 987654
No 344
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=56.01 E-value=84 Score=26.57 Aligned_cols=46 Identities=28% Similarity=0.268 Sum_probs=28.2
Q ss_pred hhHHHHHHHHhcC-CChHHHHHHHHHHHHHHhhCcchHHHHHHHHHh
Q 006253 2 SAEVTQILLNAQS-VDGTVRKQAEESLKQYQEQNLPGFLLSLAGELV 47 (653)
Q Consensus 2 ~~~l~~ll~~~~s-~d~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~ 47 (653)
+.++.+++..+++ +|+++++.|-+.|-.++......|-..|..++.
T Consensus 15 ~~~l~~~~~~LL~~~d~~vQklAL~cll~~k~~~l~pY~d~L~~Lld 61 (141)
T PF07539_consen 15 SDELYDALLRLLSSRDPEVQKLALDCLLTWKDPYLTPYKDNLENLLD 61 (141)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHhHHHHHHHHcC
Confidence 4566666666654 678888888888877765322334444444444
No 345
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=55.60 E-value=1.2e+02 Score=28.47 Aligned_cols=97 Identities=14% Similarity=0.067 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHHHHHhhhcCC----CCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhc--------ccccchhhHh
Q 006253 106 HDARSTASQVVAKVAGIELPH----KQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVS--------SDAVEQDHVN 173 (653)
Q Consensus 106 ~~vr~~~~~~l~~ia~~~~~~----~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~--------~~~~~~~~~~ 173 (653)
+.+|-..-.+++++++.+-++ -...|++|..+..+..++...+..|..++..|...-. ++.+ .++.
T Consensus 110 E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf--~av~ 187 (262)
T PF04078_consen 110 EYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERF--FAVA 187 (262)
T ss_dssp HHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHH--HHHH
T ss_pred chhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHH--HHHH
Confidence 689999999999999865331 0236899999999988888888889888888766421 1222 2344
Q ss_pred HHHHHHHhcccCCCCCHHHHHHHHHHHHHHHH
Q 006253 174 KILTAVVQGMNASESNNDVRLAATRALYNALG 205 (653)
Q Consensus 174 ~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~ 205 (653)
.++..++..+.. ++++.+-+..+.|..++.+
T Consensus 188 ~vL~~mV~~l~~-~pS~RLLKhIIrCYlRLsd 218 (262)
T PF04078_consen 188 MVLNKMVEQLVK-QPSPRLLKHIIRCYLRLSD 218 (262)
T ss_dssp HHHHHHHHHHHH-S--HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcc-CCChhHHHHHHHHHHHHcc
Confidence 455544444443 7888888888888877543
No 346
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=55.42 E-value=2.1e+02 Score=27.87 Aligned_cols=60 Identities=17% Similarity=0.162 Sum_probs=46.4
Q ss_pred hhhcchhhhhhHHHhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcC
Q 006253 64 KNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELP 125 (653)
Q Consensus 64 ~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~ 125 (653)
++.++..|...... ..|...+.+.+......+++.|.+.+...|..++.+|..++...+.
T Consensus 34 k~~Fe~~~~~~~~~--~~W~~~~~~~~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~ 93 (293)
T PF07923_consen 34 KKAFEQDWRSFCQD--PSWDELSFDQRKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWG 93 (293)
T ss_pred HHHHHHHhhhhhcc--ccccccchhhHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCcc
Confidence 44555555322211 5799999999999999999999999999999999999999976544
No 347
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=55.08 E-value=65 Score=28.16 Aligned_cols=73 Identities=14% Similarity=0.077 Sum_probs=47.1
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHh-cccCCCCCHHHHHHHHHHHHHHHH
Q 006253 131 ELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQ-GMNASESNNDVRLAATRALYNALG 205 (653)
Q Consensus 131 ~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~-~l~~~~~~~~vr~~a~~~l~~~~~ 205 (653)
.+.+.+...+.++++.+-..+++++..+...+ ...+ +.....+++.+.. .+..+..+..-|..+++++..++.
T Consensus 73 ~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~-~~~L-k~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 73 DLCPALLKNLSSSDFPIFSRSLRIFLTLLSRF-RSHL-KLELEVFLSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 44455555555555666677888888888777 4445 5566677777666 444322345678889999888664
No 348
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=54.97 E-value=16 Score=20.97 Aligned_cols=15 Identities=27% Similarity=0.315 Sum_probs=13.0
Q ss_pred hhhHHHHHHHHHHhh
Q 006253 381 WRQREAATYAFGSIL 395 (653)
Q Consensus 381 ~~~r~aal~~l~~i~ 395 (653)
|.+|+.+..+||.+.
T Consensus 1 ~~vR~~aa~aLg~~~ 15 (30)
T smart00567 1 PLVRHEAAFALGQLG 15 (30)
T ss_pred CHHHHHHHHHHHHcC
Confidence 678999999999884
No 349
>smart00755 Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-245.
Probab=54.65 E-value=27 Score=22.74 Aligned_cols=33 Identities=21% Similarity=0.311 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhh
Q 006253 90 KAQIKSFILKTLSSPAHDARSTASQVVAKVAGIE 123 (653)
Q Consensus 90 ~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~ 123 (653)
.+++|+.+++.|...+.. |.+...+++++....
T Consensus 4 ~eYLKNVll~fl~~~e~~-r~~ll~vi~tlL~fs 36 (46)
T smart00755 4 FEYLKNVLLQFLTLRESE-RETLLKVISTVLQLS 36 (46)
T ss_pred HHHHHHHHHHHhccCcch-HHHHHHHHHHHhCCC
Confidence 478899999999988766 889999988887654
No 350
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.42 E-value=2.6e+02 Score=28.80 Aligned_cols=94 Identities=15% Similarity=0.158 Sum_probs=51.2
Q ss_pred hHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHH
Q 006253 173 NKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYE 252 (653)
Q Consensus 173 ~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 252 (653)
..++.+++.++. -.+.++....++.|..+.-+..... ......++..+..+....++++++..+..+-.+.-..+
T Consensus 303 kniV~mLVKaLd--r~n~~Ll~lv~~FLkKLSIf~eNK~--~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~g- 377 (791)
T KOG1222|consen 303 KNIVAMLVKALD--RSNSSLLTLVIKFLKKLSIFDENKI--VMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSG- 377 (791)
T ss_pred HhHHHHHHHHHc--ccchHHHHHHHHHHHHhhhhccchH--HHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhcccccc-
Confidence 456667777775 3444444444444443332222111 11224567777777777888999888887776554432
Q ss_pred hhHHhHH-HHHHHHHHHhhc
Q 006253 253 KLAPYIQ-DIFNITAKAVRE 271 (653)
Q Consensus 253 ~~~~~l~-~l~~~~~~~~~~ 271 (653)
.....+. .++|.+...+.+
T Consensus 378 lr~KMv~~GllP~l~~ll~~ 397 (791)
T KOG1222|consen 378 LRPKMVNGGLLPHLASLLDS 397 (791)
T ss_pred ccHHHhhccchHHHHHHhCC
Confidence 1122222 466666666543
No 351
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=53.89 E-value=25 Score=25.69 Aligned_cols=52 Identities=10% Similarity=0.159 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHhhhccCCCCccccCccchH--HHHHHHHHhccc--hhhHHHHHHHHHHHHHhc
Q 006253 427 KDTTAWTLGRMFEFLHGSTLETPIINQGNCQ--QIISVLLQSMKD--VPNVAEKACGALYFLAQG 487 (653)
Q Consensus 427 r~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~--~il~~l~~~l~d--~~~v~~~a~~al~~~~~~ 487 (653)
+.+|+|++|.++..-. .-+++. .+++.+++.... ...+|-.|..+++-+...
T Consensus 4 lKaaLWaighIgss~~---------G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T 59 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPL---------GIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST 59 (73)
T ss_pred HHHHHHHHHhHhcChH---------HHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC
Confidence 4689999999987533 223333 577777777664 468999999999988764
No 352
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=53.76 E-value=2.6e+02 Score=28.42 Aligned_cols=70 Identities=11% Similarity=0.123 Sum_probs=47.8
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHH--HHHHHHhcc-chhhHHHHHHHHHHHHH
Q 006253 409 IALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQI--ISVLLQSMK-DVPNVAEKACGALYFLA 485 (653)
Q Consensus 409 ~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~i--l~~l~~~l~-d~~~v~~~a~~al~~~~ 485 (653)
+++..+++.|..+.+|.+-.-||.=+|.+....+. ....+.+. =..+.+.+. ++++||.+|..|+..++
T Consensus 366 ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~--------gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 366 ELLKILIKLLETSNDPIILCVACHDIGEYVRHYPE--------GKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLM 437 (442)
T ss_pred HHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCch--------HhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 45667777772334588999999999999998863 23333222 223344455 48999999999998876
Q ss_pred h
Q 006253 486 Q 486 (653)
Q Consensus 486 ~ 486 (653)
-
T Consensus 438 ~ 438 (442)
T KOG2759|consen 438 V 438 (442)
T ss_pred h
Confidence 4
No 353
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=52.83 E-value=27 Score=33.46 Aligned_cols=73 Identities=12% Similarity=0.149 Sum_probs=46.4
Q ss_pred hHHHHHHHhhcCCChh-HHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHh
Q 006253 131 ELIGALLSNIHQLPPH-TKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGF 206 (653)
Q Consensus 131 ~l~~~l~~~l~~~~~~-~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~ 206 (653)
+++..|...+++.+++ ....|+.=++.+++.. |+..+.-.--..-..+++.++ .++++||-.|++++..++.+
T Consensus 356 ~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~-PE~~~vl~Kyg~k~~im~L~n--h~d~~VkfeAl~a~q~~i~~ 429 (432)
T COG5231 356 EIVKVLKKYLQSNNPNTWICVACSDIFQLVRAS-PEINAVLSKYGVKEIIMNLIN--HDDDDVKFEALQALQTCISS 429 (432)
T ss_pred HHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhC-chHHHHHHHhhhHHHHHHHhc--CCCchhhHHHHHHHHHHHhh
Confidence 4666777777776655 3344666666677766 553310000112234567777 78899999999999988764
No 354
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=52.07 E-value=2.5e+02 Score=27.86 Aligned_cols=109 Identities=14% Similarity=0.175 Sum_probs=66.0
Q ss_pred HHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhH--HH---HHHHHHHhhhc-C-Cc--------HHHHHHHH
Q 006253 176 LTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDME--RD---YIMRVVCEATL-S-PE--------VKIRQAAF 240 (653)
Q Consensus 176 ~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~--~~---~il~~l~~~~~-~-~~--------~~~~~~~~ 240 (653)
+..+...++ .....+...+++.|..++.|.......+.. .+ ..++.+...-. . .+ +++|...+
T Consensus 58 ~k~lyr~L~--~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI 135 (330)
T PF11707_consen 58 LKLLYRSLS--SSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFI 135 (330)
T ss_pred HHHHHHHhC--cCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHH
Confidence 445556777 455677778999999988764322111100 11 12333321111 1 11 38999999
Q ss_pred HHHHHHHHHhHHhhH-HhHH--HHHHHHHHHhhcCChhHHHHHHHhHHH
Q 006253 241 ECLVAISSTYYEKLA-PYIQ--DIFNITAKAVREDEEPVALQAIEFWSS 286 (653)
Q Consensus 241 ~~l~~l~~~~~~~~~-~~l~--~l~~~~~~~~~~~~~~~~~~a~~~~~~ 286 (653)
+.+..+....+..+. ..+. .++..+++.+..+++++....++++..
T Consensus 136 ~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~ 184 (330)
T PF11707_consen 136 RFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKD 184 (330)
T ss_pred HHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHH
Confidence 999999887654433 3343 467888888888888887777776554
No 355
>PLN03205 ATR interacting protein; Provisional
Probab=50.78 E-value=1.5e+02 Score=29.52 Aligned_cols=95 Identities=15% Similarity=0.158 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcc--cccc---hhhHhHHHHHHHhccc
Q 006253 110 STASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSS--DAVE---QDHVNKILTAVVQGMN 184 (653)
Q Consensus 110 ~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~--~~~~---~~~~~~l~~~l~~~l~ 184 (653)
.+..+....+.+..++.-....+++.|+..+.-++..+...++++|..+.+++=. ..++ ......++....+...
T Consensus 302 ekVshlYs~~tKiS~G~V~lqtLlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv 381 (652)
T PLN03205 302 EKVYHLYSAVTKISYGFVNLKSLVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIAS 381 (652)
T ss_pred HHHHHHHHHHHHhhCCeeeHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHh
Confidence 4555555555555443235578999999999988888889999999988887511 2221 1234455555555433
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q 006253 185 ASESNNDVRLAATRALYNALG 205 (653)
Q Consensus 185 ~~~~~~~vr~~a~~~l~~~~~ 205 (653)
. .....||..|+.++.-++.
T Consensus 382 ~-~TEE~VrLEAvSIMnVIlm 401 (652)
T PLN03205 382 I-RTEEDVKLEALSIMNIIVM 401 (652)
T ss_pred c-cchhheeeehhhhhHHhhh
Confidence 2 4566788888887776553
No 356
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=50.52 E-value=3.6e+02 Score=29.16 Aligned_cols=181 Identities=14% Similarity=0.169 Sum_probs=84.6
Q ss_pred hHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHh--hhcCCcHH----HHHHHHHHHHHH
Q 006253 173 NKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCE--ATLSPEVK----IRQAAFECLVAI 246 (653)
Q Consensus 173 ~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~--~~~~~~~~----~~~~~~~~l~~l 246 (653)
..++..++..=+ ..+.++|..|+-|+..++..........-+...++..+-. ....+... .+....+.++.=
T Consensus 281 k~liK~~V~vWs--tge~~~rv~Afl~l~~l~~~~~~~~l~~vlk~mY~afv~nsk~~~~~tl~~i~Fl~~slvEL~~ld 358 (661)
T KOG2256|consen 281 KKLIKAVVHVWS--TGEESLRVLAFLCLIDLCRKFKSTCLDPVLKTMYLAFVRNSKFVTVNTLPLINFLQNSLVELLGLD 358 (661)
T ss_pred HHHHHHHheeec--cCCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCCcccchhHHHHHHHHHHhccC
Confidence 334444443333 4577899999999887654322111111111222222221 11222222 222333333332
Q ss_pred HHHhHHhhHHhHHHHHHHHHHHhhcCCh-hH-------HHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhh
Q 006253 247 SSTYYEKLAPYIQDIFNITAKAVREDEE-PV-------ALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHAL 318 (653)
Q Consensus 247 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~~-------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 318 (653)
.+..+...--|+.++.-++-+++..... .+ -..++++|..+...+.. ....+++++
T Consensus 359 ~~~~Yq~aF~yIrQLAihLRnam~~k~K~s~~~VYnWqfi~cL~lW~rvisf~~~----------------~~s~lq~Lv 422 (661)
T KOG2256|consen 359 LQVSYQHAFVYIRQLAIHLRNAMITKNKESVQSVYNWQYVHCLDLWLRVISFANG----------------SASQLQPLV 422 (661)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc----------------cHhhhhhhh
Confidence 3333333344666665555555543221 11 13688999988763210 112345555
Q ss_pred hhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCC--CchhchHHHHHhhh
Q 006253 319 PVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGD--DIVPLVMPFVEENI 376 (653)
Q Consensus 319 ~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~--~~~~~l~~~l~~~l 376 (653)
.+++.+.+..++-... ..-+..|..+.+.|..++...|- .+.|.+++.+....
T Consensus 423 YpLvQvi~GvirLipT-----~qy~PLRlhcir~Li~Ls~ssg~fIPi~~ll~Eml~~~~ 477 (661)
T KOG2256|consen 423 YPLVQVILGVIRLIPT-----PQYYPLRLHCIRSLISLSRSSGTFIPLSPLLVEMLKSVT 477 (661)
T ss_pred hHHHHHHHHHhhhcCc-----ccchhHHHHHHHHHHHHHhhcCceeecHHHHHHHHHHhh
Confidence 5555555544332111 11246788777888887776663 33444554444433
No 357
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=50.50 E-value=1.9e+02 Score=26.10 Aligned_cols=58 Identities=16% Similarity=0.142 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhh
Q 006253 146 HTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFA 207 (653)
Q Consensus 146 ~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~ 207 (653)
......+.+++.+.+.+.+. - .+.+..++..+.+.-. +++...|..+=.|++..+..+
T Consensus 15 ~aw~~vl~v~s~lf~~lg~~-~-~~~l~~~L~~l~~lr~--~~~f~~~~~~e~~lgaAi~am 72 (198)
T PF08161_consen 15 HAWPEVLNVLSALFEKLGER-S-SPLLKPILKTLGDLRE--SEDFSFRKELEQVLGAAIRAM 72 (198)
T ss_pred HHHHHHHHHHHHHHHHHhhh-c-cHHHHHHHHHHHHHHc--CCCcchHHHHHHHHHHHHHHC
Confidence 34455566666666666222 2 3555666666665555 444667777777777766543
No 358
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=50.24 E-value=2.7e+02 Score=27.71 Aligned_cols=196 Identities=12% Similarity=0.033 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhccccc
Q 006253 89 VKAQIKSFILKTLSSP-AHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAV 167 (653)
Q Consensus 89 ~~~~i~~~ll~~l~~~-~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~ 167 (653)
.-..+.+.+...+..+ ++.....+..+++.=.... ....-+.++..+...+++..+.+|..-+.+++.++........
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~-~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~ 97 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL-SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDS 97 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh-CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchH
Confidence 3345667777777765 4666666666666554443 1123468889999999998888999999999988761100001
Q ss_pred chhhHhHHHHHHHhcc----cCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHH------------H-H-HHHHHhhhc
Q 006253 168 EQDHVNKILTAVVQGM----NASESNNDVRLAATRALYNALGFAQANFSNDMERD------------Y-I-MRVVCEATL 229 (653)
Q Consensus 168 ~~~~~~~l~~~l~~~l----~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~------------~-i-l~~l~~~~~ 229 (653)
......++|.+.+.+ .+ +.+......+.+-+.++......+....... . + -+.+..-+
T Consensus 98 -~~~~~~~~~~L~~~~~~~~~~--p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl- 173 (339)
T PF12074_consen 98 -LKFAEPFLPKLLQSLKEASAN--PLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKL- 173 (339)
T ss_pred -HHHHHHHHHHHHHHHHHHHhC--CCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhcc-
Confidence 233444555444433 43 2222111111111111110000000000000 0 0 01111111
Q ss_pred CCcHHHHHHHHHHHHHHHHHhHHhhHHhH-HHHHHHHHHHhhcC--ChhHHHHHHHhHHHhhHH
Q 006253 230 SPEVKIRQAAFECLVAISSTYYEKLAPYI-QDIFNITAKAVRED--EEPVALQAIEFWSSVCDE 290 (653)
Q Consensus 230 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~l-~~l~~~~~~~~~~~--~~~~~~~a~~~~~~~~~~ 290 (653)
.+++.....++++..+...+.+...... ......++..+.+. ..++|..|.+.+..+...
T Consensus 174 -~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~ 236 (339)
T PF12074_consen 174 -ASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYAS 236 (339)
T ss_pred -CCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Confidence 3444555677777777766654443322 34555556666666 789999999988877653
No 359
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=49.15 E-value=1.8e+02 Score=25.22 Aligned_cols=121 Identities=19% Similarity=0.232 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCH
Q 006253 111 TASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNN 190 (653)
Q Consensus 111 ~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 190 (653)
-...++..+.+... ..-+++++.+.+.+.+........-..+|..++... |..+ .++...+-..+ ..+. .-..
T Consensus 37 LG~~IL~~~fk~h~--~~r~~Ile~l~~rI~~~s~~~~~~~idlL~~lv~~~-p~~v-le~~~~l~~~l-d~l~--~lp~ 109 (158)
T PF14676_consen 37 LGIQILLELFKVHE--MIRSEILEQLLNRIVTKSSSPSSQYIDLLSELVRKA-PLTV-LECSSKLKELL-DYLS--FLPG 109 (158)
T ss_dssp HHHHHHHHHHHH-G--GGHHHHHHHHHHHHHH--SS--HHHHHHHHHHHHH--HHHH-S-S-HHHHGGG-GGTT--TS-H
T ss_pred HHHHHHHHHHHHhH--HHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHC-hHHH-HHHHHHHHHHH-HHHH--hCCH
Confidence 55666666665532 244678888877775443332223478888888877 5444 33333333222 2222 2334
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 006253 191 DVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLV 244 (653)
Q Consensus 191 ~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~ 244 (653)
++...-++++.-++.. ....++.++-.+-+.+-..+.+.|..++..+.
T Consensus 110 ~~a~~ll~Al~PLi~~------s~~lrd~lilvLRKamf~r~~~~R~~Av~Gfl 157 (158)
T PF14676_consen 110 DVAIGLLRALLPLIKF------SPSLRDSLILVLRKAMFSRELDARQMAVNGFL 157 (158)
T ss_dssp HHHHHHHHHHHHHHTT-------HHHHHHHHHHHHHHTT-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc------CHHHHHHHHHHHHHHHccccHHHHHHHHHHhc
Confidence 4444444554444332 12345677777777776677777777766543
No 360
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=47.98 E-value=2.8e+02 Score=27.23 Aligned_cols=170 Identities=16% Similarity=0.053 Sum_probs=81.3
Q ss_pred chHHHHHHHHHhcCC--CChhHHHHHHHHHhhhcchhhhhhHHHhhhhccCCChHHHHHHHHHHHHhcCC------CChH
Q 006253 36 PGFLLSLAGELVNDE--KPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSS------PAHD 107 (653)
Q Consensus 36 ~~~~~~l~~il~~~~--~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~------~~~~ 107 (653)
-..+..|+....+.+ ..-.+|.+|+-+|+.++..+..-...-....-..-.+.....-...|+++|.+ .++.
T Consensus 33 ~pvi~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy 112 (312)
T PF04869_consen 33 VPVIDALLNLMLNENSVQPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPY 112 (312)
T ss_dssp EEHHHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HH
T ss_pred ccHHHHHHHHHhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHH
Confidence 345666777666545 68899999999999999876432211111110110011100011125555542 1221
Q ss_pred HHHHHHHHHHHHHhhh------------cC---CCCCchHHHHHHHhhc-----CCChhHHHHHHHHHHHHHhhhccccc
Q 006253 108 ARSTASQVVAKVAGIE------------LP---HKQWPELIGALLSNIH-----QLPPHTKQATLETLGYICEEVSSDAV 167 (653)
Q Consensus 108 vr~~~~~~l~~ia~~~------------~~---~~~~~~l~~~l~~~l~-----~~~~~~~~~~l~~l~~l~~~~~~~~~ 167 (653)
--=-++.++..+.... .+ ...-..+++.+.+.+. +.++.++.+-+..|...+-+. |.-.
T Consensus 113 ~~wfAa~il~hll~dn~~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~-p~AV 191 (312)
T PF04869_consen 113 RCWFAAVILMHLLRDNPEAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFEC-PDAV 191 (312)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT--HHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCC-HHHH
Confidence 1124666666655421 00 0122356666666553 346778888888888877766 4322
Q ss_pred chhhH--hHHHHHHHhcc-cCCCCCHHHHHHHHHHHHHHHHhh
Q 006253 168 EQDHV--NKILTAVVQGM-NASESNNDVRLAATRALYNALGFA 207 (653)
Q Consensus 168 ~~~~~--~~l~~~l~~~l-~~~~~~~~vr~~a~~~l~~~~~~~ 207 (653)
...+ ...++.+++.. ..++.+.-|+-.+.-.|+-+.+|.
T Consensus 192 -~~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicyef~ 233 (312)
T PF04869_consen 192 -NDFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYEFS 233 (312)
T ss_dssp -HHHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHHT-
T ss_pred -HHHHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHhc
Confidence 1111 11333333322 222567778877777777777765
No 361
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=46.46 E-value=57 Score=25.02 Aligned_cols=56 Identities=7% Similarity=-0.006 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccchhhHHHHHHHHHHHHHhc
Q 006253 425 HVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQG 487 (653)
Q Consensus 425 ~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~al~~~~~~ 487 (653)
.-|.++...|+.+...++. ...++++.++..|.+...+...++..+-.++..|-+.
T Consensus 4 ~~rH~~VLGL~Alv~a~Py-------~vP~w~P~~l~~La~~~~~~~~I~~tvk~tl~eFkrt 59 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPY-------DVPPWMPEVLEELARHANDPQPIRTTVKKTLSEFKRT 59 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S---------SS-HHHHHHHHHHTTSSS-SSHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCC-------CCcccHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHh
Confidence 4678888899999988853 4667888888887777776566777777888888765
No 362
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=46.46 E-value=46 Score=26.17 Aligned_cols=57 Identities=12% Similarity=0.166 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhhcCCCCCcchHHHH--HHHHHHHHHhc-CCCchHHHHHHHHHHHHHHhhhc
Q 006253 384 REAATYAFGSILEGPSPEKLVPLVN--IALNFMLTALM-QDPNNHVKDTTAWTLGRMFEFLH 442 (653)
Q Consensus 384 r~aal~~l~~i~~~~~~~~~~~~l~--~l~~~ll~~l~-~d~~~~vr~~a~~~l~~~~~~~~ 442 (653)
|...+..++.++..+. . ....+. .-+|.++.... ++.+|.+|+-|.+|+.++++...
T Consensus 3 K~~lvrlianl~~~~~-~-~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~ 62 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNK-E-VQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNP 62 (102)
T ss_pred HHHHHHHHHHHHhCCH-H-HHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCH
Confidence 4455666777776541 2 112222 22677766542 67899999999999999998764
No 363
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=46.35 E-value=1.8e+02 Score=24.56 Aligned_cols=115 Identities=16% Similarity=0.126 Sum_probs=67.0
Q ss_pred hhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHhhhccCCCCccccCc
Q 006253 375 NITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQ-DPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQ 453 (653)
Q Consensus 375 ~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~ 453 (653)
.+.+++|.. ..-++...... ... -...+..|.+.+ + +.++.+...|+..+..+.+.++..- ...
T Consensus 13 ~l~~~dw~~----ileicD~In~~-~~~----~k~a~ralkkRl-~~~~n~~v~l~aL~LLe~~vkNCG~~f-----h~e 77 (141)
T cd03565 13 SLQSEDWGL----NMEICDIINET-EDG----PKDAVRALKKRL-NGNKNHKEVMLTLTVLETCVKNCGHRF-----HVL 77 (141)
T ss_pred CCCCcCHHH----HHHHHHHHhCC-CCc----HHHHHHHHHHHH-ccCCCHHHHHHHHHHHHHHHHHccHHH-----HHH
Confidence 445667754 33444444331 111 235567777888 6 4789999999999999999886311 111
Q ss_pred cchHHHHHH-HHHhccc----hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHH
Q 006253 454 GNCQQIISV-LLQSMKD----VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQAL 509 (653)
Q Consensus 454 ~~~~~il~~-l~~~l~d----~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L 509 (653)
---..++.. |...+.+ +..|+.+....+......+.+ ..-.+++...+..|
T Consensus 78 iask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~~-----~~~l~~i~~~y~~L 133 (141)
T cd03565 78 VAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAFRG-----SPDLTGVVEVYEEL 133 (141)
T ss_pred HHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhCC-----CccchHHHHHHHHH
Confidence 111244444 4444442 357888988888888887653 22234455555444
No 364
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=46.03 E-value=4.2e+02 Score=28.67 Aligned_cols=75 Identities=19% Similarity=0.190 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc-hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhH
Q 006253 424 NHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFF 502 (653)
Q Consensus 424 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l 502 (653)
..+-...+..+.+++..+.. ....+..++...+..... +..+|..|..++..+|.... ...+.+.+
T Consensus 256 te~~~~~L~~l~~l~~~~~~--------f~k~lk~liK~~V~vWstge~~~rv~Afl~l~~l~~~~~-----~~~l~~vl 322 (661)
T KOG2256|consen 256 TEVLAFTLRHLTVLVPFLAT--------FPKLLKKLIKAVVHVWSTGEESLRVLAFLCLIDLCRKFK-----STCLDPVL 322 (661)
T ss_pred HHHHHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHheeeccCCcchhhHHHHHHHHHHHHhh-----hHHHHHHH
Confidence 44555555555555555531 344555555555554443 56778888888888887643 34455555
Q ss_pred HHHHHHHHH
Q 006253 503 QEIVQALLT 511 (653)
Q Consensus 503 ~~i~~~L~~ 511 (653)
..++-..+.
T Consensus 323 k~mY~afv~ 331 (661)
T KOG2256|consen 323 KTMYLAFVR 331 (661)
T ss_pred HHHHHHHHH
Confidence 555544443
No 365
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=45.88 E-value=4.8e+02 Score=29.31 Aligned_cols=82 Identities=9% Similarity=0.028 Sum_probs=49.6
Q ss_pred ccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHH
Q 006253 164 SDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECL 243 (653)
Q Consensus 164 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l 243 (653)
|..+ ......+...+..-++ .....--+-|++++..++..+.+.. .-+...++..+..++.+..++....++.++
T Consensus 47 p~KL-~KI~~yL~~R~~kdl~--~~r~~~v~Iamea~~kLL~~C~eq~--n~F~ssfL~mv~~LLes~~~~~~ilg~~sf 121 (819)
T KOG1877|consen 47 PSKL-PKIGTYLEERCYKDLR--RERFGSVKIAMEAYDKLLQACKEQI--NLFVSSFLRMVQKLLESNNDEMQILGTNSF 121 (819)
T ss_pred hhhh-hHHHHHHHHHHHHHHH--hccCcchhhHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHhcCCCceeeehhhHH
Confidence 4444 2333444444554444 2222223346777777777776554 234466778777777666777888888898
Q ss_pred HHHHHHh
Q 006253 244 VAISSTY 250 (653)
Q Consensus 244 ~~l~~~~ 250 (653)
..++...
T Consensus 122 ~~F~~i~ 128 (819)
T KOG1877|consen 122 VKFANIE 128 (819)
T ss_pred HHHHhhc
Confidence 8888543
No 366
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=45.55 E-value=1.8e+02 Score=25.07 Aligned_cols=89 Identities=20% Similarity=0.286 Sum_probs=59.2
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHhhh-----cCCCCCchHHHHHHHhhcCCC-----------hh------HHHHHHH
Q 006253 96 FILKTLSSPAHDARSTASQVVAKVAGIE-----LPHKQWPELIGALLSNIHQLP-----------PH------TKQATLE 153 (653)
Q Consensus 96 ~ll~~l~~~~~~vr~~~~~~l~~ia~~~-----~~~~~~~~l~~~l~~~l~~~~-----------~~------~~~~~l~ 153 (653)
.++..|.++.-.=|+.+..-+..+.... .+...|..+++.|+.++..+. .. -...+..
T Consensus 8 ~~~~~L~S~k~keR~~al~~L~~il~~~~~~~~l~~k~~~~ifeaL~~~i~~Ek~~y~~~~~~~~s~~~~~~~RL~~~a~ 87 (155)
T PF11640_consen 8 SILRLLSSDKIKERNKALEDLRHILSSPPRVDSLNDKQWHSIFEALFRCIEKEKEAYSRKKSSSASTATTAESRLSSCAS 87 (155)
T ss_pred HHHHHHhccccchHHHHHHHHHHHHcCccccccCCcchHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHH
Confidence 4667788877777888888888888643 233589999999998874321 11 1244556
Q ss_pred HHHHHHhhhcccccchhhHhHHHHHHHhcccC
Q 006253 154 TLGYICEEVSSDAVEQDHVNKILTAVVQGMNA 185 (653)
Q Consensus 154 ~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~ 185 (653)
++..+++.. ...+....+..++..+.+.+..
T Consensus 88 ~lR~~ve~~-~~~~k~kt~~~Ll~hI~~~l~~ 118 (155)
T PF11640_consen 88 ALRLFVEKS-NSRLKRKTVKALLDHITDLLPD 118 (155)
T ss_pred HHHHHHHHH-HhhcccchHHHHHHHHHHHhhC
Confidence 666666655 3344345567788888888873
No 367
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=43.47 E-value=1.5e+02 Score=27.14 Aligned_cols=66 Identities=17% Similarity=0.312 Sum_probs=43.4
Q ss_pred chHHHHHhhhcCcc-hhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhh
Q 006253 367 LVMPFVEENITKQE-WRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFL 441 (653)
Q Consensus 367 ~l~~~l~~~l~~~~-~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~ 441 (653)
...+.+.+...|++ |..|-|.+..+. ..+... .+.+...+...+ .|++..|+.+.-|+|..+++.-
T Consensus 115 ~~~~~l~~W~~s~~~W~rR~ai~~~l~-~~~~~~-------~~~l~~~~~~~~-~d~e~fI~KAiGW~LRe~~k~d 181 (208)
T cd07064 115 EFEPVMDEWSTDENFWLRRTAILHQLK-YKEKTD-------TDLLFEIILANL-GSKEFFIRKAIGWALREYSKTN 181 (208)
T ss_pred hHHHHHHHHHcCCcHHHHHHHHHHHHH-HHHccC-------HHHHHHHHHHhC-CChHHHHHHHHHHHHHHHhccC
Confidence 33566667777777 655555443333 333211 234455566677 9999999999999999998754
No 368
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=42.96 E-value=1.7e+02 Score=29.18 Aligned_cols=77 Identities=5% Similarity=-0.069 Sum_probs=55.8
Q ss_pred hhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHH--HHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHhhh
Q 006253 365 VPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLV--NIALNFMLTALMQ-DPNNHVKDTTAWTLGRMFEFL 441 (653)
Q Consensus 365 ~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l--~~l~~~ll~~l~~-d~~~~vr~~a~~~l~~~~~~~ 441 (653)
-...+..|...++..++.+.--|+..+++++.+|+ ..+..-+ ..+...+...+ . ..|+.|+.....++.++++.+
T Consensus 43 ~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg-~~~r~EVsSr~F~~el~al~-~~~~h~kV~~k~~~lv~eWsee~ 120 (462)
T KOG2199|consen 43 GKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCG-KRFRLEVSSRDFTTELRALI-ESKAHPKVCEKMRDLVKEWSEEF 120 (462)
T ss_pred cHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcc-hHHHHHHhhhhHHHHHHHHH-hhcccHHHHHHHHHHHHHHHHHh
Confidence 44567777788888888888889999999999985 3221111 12334444445 4 689999999999999999987
Q ss_pred cc
Q 006253 442 HG 443 (653)
Q Consensus 442 ~~ 443 (653)
..
T Consensus 121 K~ 122 (462)
T KOG2199|consen 121 KK 122 (462)
T ss_pred cc
Confidence 64
No 369
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=41.35 E-value=2e+02 Score=23.60 Aligned_cols=43 Identities=2% Similarity=0.063 Sum_probs=36.1
Q ss_pred HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhHHH
Q 006253 218 DYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQD 260 (653)
Q Consensus 218 ~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~ 260 (653)
..++..|..-+++.++.++..++++|.-++...+..|...+..
T Consensus 37 ~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~ 79 (122)
T cd03572 37 QELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQR 79 (122)
T ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 5788899999988899999999999999999887666665554
No 370
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=40.96 E-value=2.1e+02 Score=29.96 Aligned_cols=73 Identities=11% Similarity=0.011 Sum_probs=53.2
Q ss_pred chHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhccc-ccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHH
Q 006253 130 PELIGALLSNIHQLPPHTKQATLETLGYICEEVSSD-AVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALG 205 (653)
Q Consensus 130 ~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~-~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~ 205 (653)
.+++..+...+.+.|...+....+++.++.-.+... .+ +.-...=+..++...+ |+...|+...++.|.++..
T Consensus 472 ~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf-~~Lakig~~kvl~~~N--Dpc~~vq~q~lQilrNftc 545 (743)
T COG5369 472 KSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKF-KFLAKIGVEKVLSYTN--DPCFKVQHQVLQILRNFTC 545 (743)
T ss_pred hhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhh-hhHHhcCHHHHHHHhc--CcccccHHHHHHHHHhccc
Confidence 578888999988888888888999999887776211 12 1111222556667777 8999999999999998754
No 371
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.86 E-value=7.2e+02 Score=29.89 Aligned_cols=101 Identities=13% Similarity=0.194 Sum_probs=60.3
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhhcCChhH----HHHHHHHHHhh-hc---C-CcHHH----HHHHHHHHHHHHHHhHHh
Q 006253 187 ESNNDVRLAATRALYNALGFAQANFSNDME----RDYIMRVVCEA-TL---S-PEVKI----RQAAFECLVAISSTYYEK 253 (653)
Q Consensus 187 ~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~----~~~il~~l~~~-~~---~-~~~~~----~~~~~~~l~~l~~~~~~~ 253 (653)
|.-++||..|++++.+++.-....+..... +..++|.|-.. .+ + +..++ -...+-.+..+++.+++.
T Consensus 1008 dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e~ 1087 (1610)
T KOG1848|consen 1008 DSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSEN 1087 (1610)
T ss_pred cchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHHH
Confidence 788999999999999987643333332221 23345555311 11 0 11122 123555666677766665
Q ss_pred hHH---------hHHHHHHHHHHHhhcCChhHHHHHHHhHHHh
Q 006253 254 LAP---------YIQDIFNITAKAVREDEEPVALQAIEFWSSV 287 (653)
Q Consensus 254 ~~~---------~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~ 287 (653)
+.. ..+.++.++.+...+..+++...++..+-++
T Consensus 1088 fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qel 1130 (1610)
T KOG1848|consen 1088 FKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQEL 1130 (1610)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHH
Confidence 542 3456788888888888888888777655443
No 372
>PF14961 BROMI: Broad-minded protein
Probab=40.31 E-value=3.2e+02 Score=32.02 Aligned_cols=74 Identities=15% Similarity=0.201 Sum_probs=55.6
Q ss_pred HHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhh
Q 006253 177 TAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKL 254 (653)
Q Consensus 177 ~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 254 (653)
+.+...+.. +...++|..|++.|... -..+......|+.+-+.|...+.|+|+.+...+++...+.....+-.+
T Consensus 164 q~i~d~ld~-~~P~evR~eAlq~Lc~~---p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssSpl~~ 237 (1296)
T PF14961_consen 164 QLIADKLDP-GQPKEVRLEALQILCSA---PPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKMFSSSPLNM 237 (1296)
T ss_pred HHHHHhcCC-CCchHHHHHHHHHHhcC---ChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCchhh
Confidence 556666664 56679999999988762 233444445678888888889999999999999999988887665443
No 373
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=38.31 E-value=4.9e+02 Score=27.26 Aligned_cols=96 Identities=9% Similarity=0.180 Sum_probs=54.5
Q ss_pred cCCChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHH-
Q 006253 141 HQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDY- 219 (653)
Q Consensus 141 ~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~- 219 (653)
..-++..|+..+.||.-+-. ...+ ....++..++..+. ..+...|..+..-+...+..+...-.++. .+.
T Consensus 30 ~~lp~~Lr~~i~~~LiLLrN---k~~i---~~~~LL~lff~l~~--~~dk~lRkllythiv~~Ikn~n~~~kn~k-lnks 100 (616)
T KOG2229|consen 30 TVLPPELREKIVKALILLRN---KNLI---VAEDLLELFFPLLR--CGDKNLRKLLYTHIVTTIKNINKKHKNDK-LNKS 100 (616)
T ss_pred ccCCHHHHHHHHHHHHHHhc---cCcC---CHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHHHhhcccch-HHHH
Confidence 33478888888888764422 2223 24668888888887 56677788776666665554433222221 122
Q ss_pred HHHHHHhhhcCCcHHHHHHHHHHHHH
Q 006253 220 IMRVVCEATLSPEVKIRQAAFECLVA 245 (653)
Q Consensus 220 il~~l~~~~~~~~~~~~~~~~~~l~~ 245 (653)
+-..++..+.++++.-.+.++..++.
T Consensus 101 lq~~~fsml~~~d~~~ak~a~~~~~e 126 (616)
T KOG2229|consen 101 LQAFMFSMLDQSDSTAAKMALDTMIE 126 (616)
T ss_pred HHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 33344566666666544445544444
No 374
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=37.83 E-value=3.1e+02 Score=24.85 Aligned_cols=78 Identities=17% Similarity=0.156 Sum_probs=54.7
Q ss_pred hHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHH
Q 006253 173 NKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYE 252 (653)
Q Consensus 173 ~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 252 (653)
..+.+.+.+.+. +++.=+|..++.++.. +... .+.+.++..+...+.+++.-+++++-.+|..+...+++
T Consensus 119 ~~~~~~~~~W~~--s~~~w~rR~~~v~~~~---~~~~-----~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~ 188 (213)
T PF08713_consen 119 PEALELLEKWAK--SDNEWVRRAAIVMLLR---YIRK-----EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPD 188 (213)
T ss_dssp GGHHHHHHHHHH--CSSHHHHHHHHHCTTT---HGGG-----CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HH
T ss_pred HHHHHHHHHHHh--CCcHHHHHHHHHHHHH---HHHh-----cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHH
Confidence 445666677777 6777788888766544 2222 23366777777778888899999999999999988888
Q ss_pred hhHHhHHH
Q 006253 253 KLAPYIQD 260 (653)
Q Consensus 253 ~~~~~l~~ 260 (653)
.+.+++..
T Consensus 189 ~v~~~l~~ 196 (213)
T PF08713_consen 189 EVLEFLQK 196 (213)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776654
No 375
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=37.70 E-value=4.2e+02 Score=26.30 Aligned_cols=155 Identities=15% Similarity=0.136 Sum_probs=91.1
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchh------hHhHHHHHHHhcccCC-CCC-------HHHHHHHHH
Q 006253 133 IGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQD------HVNKILTAVVQGMNAS-ESN-------NDVRLAATR 198 (653)
Q Consensus 133 ~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~------~~~~l~~~l~~~l~~~-~~~-------~~vr~~a~~ 198 (653)
+..+...+++..+.....++..|..++..-++... ++ .....++.+...-... ... +.+|...++
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a-~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~ 136 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALA-REVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR 136 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHH-HHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence 77788888888877778899999988874322111 11 1123344443211100 000 389999999
Q ss_pred HHHHHHHhhhhhcCChh-HHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhH------HHHHHHHHHHhhc
Q 006253 199 ALYNALGFAQANFSNDM-ERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYI------QDIFNITAKAVRE 271 (653)
Q Consensus 199 ~l~~~~~~~~~~~~~~~-~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l------~~l~~~~~~~~~~ 271 (653)
.+..++...+.....+. ....++..++..+..++.++...++++|..-+-... .+.... +..+..+......
T Consensus 137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~-~v~r~~K~~~fn~~~L~~l~~Ly~~ 215 (330)
T PF11707_consen 137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDS-SVSRSTKCKLFNEWTLSQLASLYSR 215 (330)
T ss_pred HHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCC-CCChhhhhhhcCHHHHHHHHHHhcc
Confidence 88888775532211100 012347777888877888888888888886444332 222221 2233334444444
Q ss_pred CCh----hHHHHHHHhHHHhhH
Q 006253 272 DEE----PVALQAIEFWSSVCD 289 (653)
Q Consensus 272 ~~~----~~~~~a~~~~~~~~~ 289 (653)
.++ .++..+-+|+..+|.
T Consensus 216 ~~~~~~~~~~~~vh~fL~~lcT 237 (330)
T PF11707_consen 216 DGEDEKSSVADLVHEFLLALCT 237 (330)
T ss_pred cCCcccchHHHHHHHHHHHHhc
Confidence 444 788888888888885
No 376
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=37.60 E-value=2.5e+02 Score=23.62 Aligned_cols=78 Identities=13% Similarity=0.203 Sum_probs=53.2
Q ss_pred hHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcC-C-cHH--HHHHHHHHHHHH
Q 006253 171 HVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLS-P-EVK--IRQAAFECLVAI 246 (653)
Q Consensus 171 ~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~-~-~~~--~~~~~~~~l~~l 246 (653)
.....+..+..-+. ..++.++..|+..+..++..+...|..+.-...++..+..++.. . .+. ++..+++.+..+
T Consensus 39 ~~kea~~~l~krl~--~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W 116 (140)
T PF00790_consen 39 GAKEAARALRKRLK--HGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEW 116 (140)
T ss_dssp HHHHHHHHHHHHHT--TSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHH
Confidence 34566667777787 68899999999999998876654432221123566666665532 2 233 899999999888
Q ss_pred HHHh
Q 006253 247 SSTY 250 (653)
Q Consensus 247 ~~~~ 250 (653)
...+
T Consensus 117 ~~~f 120 (140)
T PF00790_consen 117 AEAF 120 (140)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 8876
No 377
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=36.76 E-value=2.2e+02 Score=24.07 Aligned_cols=82 Identities=16% Similarity=0.221 Sum_probs=46.6
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchh
Q 006253 91 AQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQD 170 (653)
Q Consensus 91 ~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~ 170 (653)
+.+++.++..|.+++..|++.|-.|+...-. | ....+-+.|.+.+++. ..|+. +..+. -..+...+..+
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k~---~--~l~pY~d~L~~Lldd~--~frde-L~~f~---~~~~~~~I~~e 84 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTWKD---P--YLTPYKDNLENLLDDK--TFRDE-LTTFN---LSDESSVIEEE 84 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---H--HHHhHHHHHHHHcCcc--hHHHH-HHhhc---ccCCcCCCCHH
Confidence 4577788899999999999999988776422 1 2233445555555443 22222 22221 11112235456
Q ss_pred hHhHHHHHHHhcc
Q 006253 171 HVNKILTAVVQGM 183 (653)
Q Consensus 171 ~~~~l~~~l~~~l 183 (653)
|-..++|.++..+
T Consensus 85 hR~~l~pvvlRIL 97 (141)
T PF07539_consen 85 HRPELMPVVLRIL 97 (141)
T ss_pred HHhHHHHHHHHHH
Confidence 6677777765443
No 378
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=36.12 E-value=2.9e+02 Score=23.94 Aligned_cols=113 Identities=12% Similarity=0.143 Sum_probs=65.2
Q ss_pred HhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhh---hhhcCChhHHHHHHHHHHhhhcC--CcHHHHHHHHHHHHHH
Q 006253 172 VNKILTAVVQGMNASESNNDVRLAATRALYNALGFA---QANFSNDMERDYIMRVVCEATLS--PEVKIRQAAFECLVAI 246 (653)
Q Consensus 172 ~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~---~~~~~~~~~~~~il~~l~~~~~~--~~~~~~~~~~~~l~~l 246 (653)
...++..+..+-...+-..++...++.++..++++. ++.+. +.++..+..+++. .+..+...++..|-.+
T Consensus 13 l~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~-----~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~ 87 (160)
T PF11841_consen 13 LTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLS-----DSFIKKIASYVNSSAMDASILQRSLAILESI 87 (160)
T ss_pred HHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhcc-----HHHHHHHHHHHccccccchHHHHHHHHHHHH
Confidence 344454444333210113366677888888877752 12221 3455555555532 3678888899999888
Q ss_pred HHHhHHhhHHhHHH-HHHHHHHHhhcCChhHHHHHHHhHHHhhH
Q 006253 247 SSTYYEKLAPYIQD-IFNITAKAVREDEEPVALQAIEFWSSVCD 289 (653)
Q Consensus 247 ~~~~~~~~~~~l~~-l~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 289 (653)
+...+......-++ -++.++.-++..++++...++-.+.++--
T Consensus 88 Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~ 131 (160)
T PF11841_consen 88 VLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFL 131 (160)
T ss_pred HhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 88665432221122 24445556667888888888877666653
No 379
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=34.24 E-value=6.3e+02 Score=27.30 Aligned_cols=199 Identities=10% Similarity=0.078 Sum_probs=99.1
Q ss_pred cCCChHHHHHHHHHHHHhcCCCCh------------HHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHH
Q 006253 83 LSLDSSVKAQIKSFILKTLSSPAH------------DARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQA 150 (653)
Q Consensus 83 ~~l~~~~~~~i~~~ll~~l~~~~~------------~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~ 150 (653)
..++++.-+.+.+..+..++..++ .+....|+++|.+.+..+. ..-.-++..|-+...+.+ ..+..
T Consensus 26 ~~l~~~l~~~le~i~F~~lk~~d~~~~~~~~s~~~~~~~~l~AellG~lS~~rF~-sVsdRF~~eL~~~~~~~~-~~~~~ 103 (552)
T PF14222_consen 26 HSLTEELGDKLEEIVFDQLKTADPVSEQPSTSPLRLANWDLFAELLGVLSEIRFV-SVSDRFIAELEKLRKDSN-DAESK 103 (552)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCccccccccchhHHHHHHHHHHHHHHHHhhhCh-HHHHHHHHHHHHhcccCC-chHHH
Confidence 346666666777777776654332 3456778888888876544 122334445544443212 22222
Q ss_pred HHHHHHHH----HhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCCh---hHHHHHHHH
Q 006253 151 TLETLGYI----CEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSND---MERDYIMRV 223 (653)
Q Consensus 151 ~l~~l~~l----~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~---~~~~~il~~ 223 (653)
...++..+ ++..+.+.+ +...+.+..+.+.+.....+.+++.+-++.+..++.=+-.....+ ..+...+..
T Consensus 104 ~~~li~GMr~lrlk~~p~e~~--e~s~~Fm~~l~~~f~~~h~~~~ik~A~~~~l~~lLlPvA~~~~~evn~P~W~~~v~~ 181 (552)
T PF14222_consen 104 IELLIMGMRYLRLKMYPEEAF--EESAEFMQSLAKFFLEAHKKSDIKHAYCEVLVELLLPVAATATAEVNHPKWKEAVET 181 (552)
T ss_pred HHHHHhhcceeeecCCCHHHH--HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHH
Confidence 22222211 111111222 233445555555555312456799999998888775332211111 123333333
Q ss_pred H----HhhhcCCcHHHHHHHHHHHHHHHHHhH-HhhHHhHH-HHHHHHHHHhhcCChhHHHHHHHhHHHhhH
Q 006253 224 V----CEATLSPEVKIRQAAFECLVAISSTYY-EKLAPYIQ-DIFNITAKAVREDEEPVALQAIEFWSSVCD 289 (653)
Q Consensus 224 l----~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~l~-~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 289 (653)
+ .+.+.. +.....++-....+.-..+ +.|..... .++..+...+++. ..|..+++.+..+.=
T Consensus 182 i~~~~~~~~~K--~khw~~afPL~t~lLCvS~~e~F~~~W~~~~i~~~~~klKdk--~~r~~~l~~l~RLlW 249 (552)
T PF14222_consen 182 IYPRAAKMMSK--PKHWNVAFPLVTTLLCVSPKEFFLSNWLPSLIESLISKLKDK--ETRPVALECLSRLLW 249 (552)
T ss_pred HHHHHHHHHhC--cchhhhHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhhcCCh--hhhHHHHHHHHHHHH
Confidence 3 333322 2223334555544444433 45555555 5777777777665 566777776666553
No 380
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.30 E-value=3e+02 Score=28.81 Aligned_cols=102 Identities=11% Similarity=0.061 Sum_probs=70.9
Q ss_pred HhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhh--HhHHH
Q 006253 99 KTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDH--VNKIL 176 (653)
Q Consensus 99 ~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~--~~~l~ 176 (653)
..|..++..+--.+|..| ..+ + ..-++.+-.|...+++.++.+...|+.+|..+++++ ...| ..+ -..++
T Consensus 12 ~~l~~pDWa~NleIcD~I----N~~-~-~~~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNC-G~~f-h~~Va~k~fL 83 (470)
T KOG1087|consen 12 ESLAEPDWALNLEICDLI----NST-E-GGPKEAVRALKKRLNSKNSKVQLLALTLLETCVKNC-GYSF-HLQVASKEFL 83 (470)
T ss_pred ccccCccHHHHHHHHHHH----hcC-c-cCcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhh-hHHH-HHHHHHHHHH
Confidence 345566666555554443 222 1 233689999999999988899999999999999999 5544 222 24566
Q ss_pred HHHHhcccCCCCCHHHHHHHHHHHHHHHHhhh
Q 006253 177 TAVVQGMNASESNNDVRLAATRALYNALGFAQ 208 (653)
Q Consensus 177 ~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 208 (653)
.-.+........+..||..++..|..|-..+.
T Consensus 84 ~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~ 115 (470)
T KOG1087|consen 84 NEMVKRPKNKPRDLKVREKILELIDTWQQAFC 115 (470)
T ss_pred HHHHhccccCCcchhHHHHHHHHHHHHHHHcc
Confidence 66666766522678899999999998776544
No 381
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=32.35 E-value=4.3e+02 Score=24.80 Aligned_cols=141 Identities=10% Similarity=0.049 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHHHHhhhc--ccccchhhHh-HHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHH
Q 006253 146 HTKQATLETLGYICEEVS--SDAVEQDHVN-KILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMR 222 (653)
Q Consensus 146 ~~~~~~l~~l~~l~~~~~--~~~~~~~~~~-~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~ 222 (653)
.....++..|..++.+=+ ..++ +.++. .+.|.+.....+ .+..-+|..++..++.++..-+......--..+++|
T Consensus 94 nRVcnaL~LlQcvASHpdTr~~FL-~A~iPlylYpfL~Tt~~~-r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVP 171 (293)
T KOG3036|consen 94 NRVCNALALLQCVASHPDTRRAFL-RAHIPLYLYPFLNTTSKS-RPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVP 171 (293)
T ss_pred chHHHHHHHHHHHhcCcchHHHHH-HccChhhhHHhhhccccC-CchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHH
Confidence 344566767766665521 1122 23332 355665555553 567779999999999988643322111011246778
Q ss_pred HHHhhhcCCcHHHHHHHHHHHHHHHHHhH---------HhhHHhHHHHHH-HHHHHhhcCChhHHHHHHHhHHHhhH
Q 006253 223 VVCEATLSPEVKIRQAAFECLVAISSTYY---------EKLAPYIQDIFN-ITAKAVREDEEPVALQAIEFWSSVCD 289 (653)
Q Consensus 223 ~l~~~~~~~~~~~~~~~~~~l~~l~~~~~---------~~~~~~l~~l~~-~~~~~~~~~~~~~~~~a~~~~~~~~~ 289 (653)
.....+...++.-+.-+.-.+.++..... +.|. .+..++. .+.+..+..+......+++....+++
T Consensus 172 lCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~-av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsd 247 (293)
T KOG3036|consen 172 LCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFS-AVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD 247 (293)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Confidence 87877776666666666666666554321 1111 1112222 12233444566666677777777765
No 382
>KOG3613 consensus Dopey and related predicted leucine zipper transcription factors [Transcription]
Probab=30.72 E-value=2e+02 Score=34.84 Aligned_cols=82 Identities=10% Similarity=0.046 Sum_probs=59.9
Q ss_pred chhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHH
Q 006253 380 EWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQ-DPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQ 458 (653)
Q Consensus 380 ~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 458 (653)
+...|...+.-++-+.-+...+....|++.+...+...+ . ++.+.||.+.+.++.-+...+. |.+...+++.
T Consensus 1500 e~e~ra~~LkRiaf~ifsSp~Dqy~~~lp~iqErl~~~L-rv~~~~~lk~~vFL~~RVLLLR~S------p~hL~~LWPI 1572 (1749)
T KOG3613|consen 1500 ELEQRAMLLKRIAFLIFSSPLDQYLGYLPDIQERLADLL-RVSQSPKLKKAVFLFFRVLLLRIS------PDHLTSLWPI 1572 (1749)
T ss_pred HHHHHHHHHHhhHhheeeCcHHhhhhhchhHHHHHHHhc-ccCCCchHHHHHHHHHHHHHHhcC------HhhcccchHH
Confidence 355566566656654443324566778888889888888 6 8999999999999998888876 4467778887
Q ss_pred HHHHHHHhcc
Q 006253 459 IISVLLQSMK 468 (653)
Q Consensus 459 il~~l~~~l~ 468 (653)
++-.++..+.
T Consensus 1573 mv~ELv~vf~ 1582 (1749)
T KOG3613|consen 1573 MVYELVQVFL 1582 (1749)
T ss_pred HHHHHHHHHH
Confidence 7777766654
No 383
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=29.57 E-value=2.8e+02 Score=24.41 Aligned_cols=45 Identities=20% Similarity=0.299 Sum_probs=18.8
Q ss_pred HHHHHHHHhcCCC-ChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHh
Q 006253 92 QIKSFILKTLSSP-AHDARSTASQVVAKVAGIELPHKQWPELIGALLSN 139 (653)
Q Consensus 92 ~i~~~ll~~l~~~-~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~ 139 (653)
.||+--++.|..- +..+..-+-+.+-.+ +++ + ..-..+...|+..
T Consensus 86 ~VR~yAV~~L~~~sd~eL~~yL~QLVQaL-KyE-~-~~ds~La~FLl~R 131 (171)
T cd00872 86 HVREFAVRCLEKLSDDELLQYLLQLVQVL-KYE-P-YHDSDLVRFLLKR 131 (171)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHH-Hcc-c-ccCCHHHHHHHHH
Confidence 4555555555442 234444333333222 222 1 1224555555554
No 384
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=29.34 E-value=7.5e+02 Score=26.66 Aligned_cols=152 Identities=11% Similarity=0.050 Sum_probs=0.0
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCC
Q 006253 134 GALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSN 213 (653)
Q Consensus 134 ~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~ 213 (653)
..++....+-++.+|..++..++..+... |+.+ .... .+.-..-.|. |.+..+|....+++..++...+..-..
T Consensus 278 svfvsRy~Dv~d~IRv~c~~~L~dwi~lv-P~yf-~k~~--~lry~GW~LS--Dn~~~vRl~v~Kil~~L~s~~p~~d~i 351 (740)
T COG5537 278 SVFVSRYIDVDDVIRVLCSMSLRDWIGLV-PDYF-RKIL--GLRYNGWSLS--DNHEGVRLLVSKILLFLCSRIPHTDAI 351 (740)
T ss_pred HHHhhhccchhHHHHHHHHHHHHHHHhcc-hHHH-Hhhh--cccccccccc--cchHHHHHHHHHHHHHHHhcCCcchHH
Q ss_pred hhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhHH-HHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHH
Q 006253 214 DMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQ-DIFNITAKAVREDEEPVALQAIEFWSSVCDEEI 292 (653)
Q Consensus 214 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 292 (653)
..+.+.+...+.....-+..-+|...++.+..+-. ..++. .-+..+..++-+..++-|....++...+|....
T Consensus 352 r~f~eRFk~rILE~~r~D~d~VRi~sik~l~~lr~------lg~L~~SeIlIvsscmlDi~pd~r~~~~E~v~~icK~~a 425 (740)
T COG5537 352 RRFVERFKDRILEFLRTDSDCVRICSIKSLCYLRI------LGVLSSSEILIVSSCMLDIIPDSRENIVESVESICKIDA 425 (740)
T ss_pred HHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHH------hcccchhHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHH
Q ss_pred hhhhh
Q 006253 293 DILEE 297 (653)
Q Consensus 293 ~~~~~ 297 (653)
+..++
T Consensus 426 evikE 430 (740)
T COG5537 426 EVIKE 430 (740)
T ss_pred HHHHh
No 385
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=29.27 E-value=5e+02 Score=24.63 Aligned_cols=30 Identities=17% Similarity=0.104 Sum_probs=23.5
Q ss_pred ChhHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 006253 1 MSAEVTQILLNAQSVDGTVRKQAEESLKQY 30 (653)
Q Consensus 1 m~~~l~~ll~~~~s~d~~~r~~A~~~L~~~ 30 (653)
||..+..++..+.+.+....+..-.+++.+
T Consensus 1 ME~~ls~~~d~L~s~~~~~ir~GLrq~~~l 30 (257)
T PF08045_consen 1 MESLLSLAFDNLYSEDTPKIRKGLRQLEGL 30 (257)
T ss_pred CchHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 898999999999998877666666666544
No 386
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=29.21 E-value=3.5e+02 Score=24.09 Aligned_cols=75 Identities=15% Similarity=0.143 Sum_probs=54.6
Q ss_pred HHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHH
Q 006253 177 TAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAP 256 (653)
Q Consensus 177 ~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 256 (653)
+.+...+. +++.-+|..++.++..... . ..+.+.+++.+.....+++.-+++++-.+|..+...+++.+..
T Consensus 108 ~~~~~w~~--s~~~~~rR~~~~~~~~~~~---~----~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~ 178 (197)
T cd06561 108 DLLEEWAK--SENEWVRRAAIVLLLRLIK---K----ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIA 178 (197)
T ss_pred HHHHHHHh--CCcHHHHHHHHHHHHHHHH---h----cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 55566666 6777788888777665332 1 1234678888888888888899999999999999888877666
Q ss_pred hHHH
Q 006253 257 YIQD 260 (653)
Q Consensus 257 ~l~~ 260 (653)
++..
T Consensus 179 ~l~~ 182 (197)
T cd06561 179 FLEK 182 (197)
T ss_pred HHHH
Confidence 6654
No 387
>PF06628 Catalase-rel: Catalase-related immune-responsive; InterPro: IPR010582 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen, serving to protect cells from its toxic effects []. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. Most catalases are mono-functional, haem-containing enzymes, although there are also bifunctional haem-containing peroxidase/catalases (IPR000763 from INTERPRO) that are closely related to plant peroxidases, and non-haem, manganese-containing catalases (IPR007760 from INTERPRO) that are found in bacteria []. This entry represents a small conserved region within catalase enzymes that carries the immune-responsive amphipathic octa-peptide that is recognised by T cells [].; PDB: 2CAH_A 1NM0_A 1H7K_A 1E93_A 1H6N_A 3HB6_A 2CAG_A 1M85_A 1MQF_A 1A4E_C ....
Probab=29.14 E-value=1.7e+02 Score=20.88 Aligned_cols=40 Identities=15% Similarity=0.149 Sum_probs=31.7
Q ss_pred hhccCCChHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHH
Q 006253 80 QRWLSLDSSVKAQIKSFILKTLSSPAHD-ARSTASQVVAKV 119 (653)
Q Consensus 80 ~~~~~l~~~~~~~i~~~ll~~l~~~~~~-vr~~~~~~l~~i 119 (653)
..|..++++.++.+...+...|..-... |+......+..+
T Consensus 15 ~ly~~l~~~er~~lv~nia~~l~~v~~~~i~~r~l~~f~~v 55 (68)
T PF06628_consen 15 DLYRVLSDEERERLVENIAGHLSGVSDEEIQERVLAYFYKV 55 (68)
T ss_dssp HHHHHSSHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHccCChhhHHHHHHHHHHHh
Confidence 5788899999999999999999887755 887766655544
No 388
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=28.92 E-value=2.8e+02 Score=22.39 Aligned_cols=87 Identities=17% Similarity=0.204 Sum_probs=47.1
Q ss_pred chHHHHHHHHHhccchhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHH
Q 006253 455 NCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEV 534 (653)
Q Consensus 455 ~~~~il~~l~~~l~d~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l 534 (653)
|+.+++..|...= +++...+.|..+...++..-.. -+..+..+...++..|+.+=++.+.+ ...+.-..++-.+
T Consensus 4 YlrDll~~L~~~~-~~~e~~e~aL~~a~~LIR~k~~---fg~el~~~a~eL~~~Ll~L~~~f~~~--~Fe~~R~~alval 77 (114)
T PF10193_consen 4 YLRDLLEYLRSDD-EDYEKFEAALKSAEKLIRRKPD---FGTELSEYAEELLKALLHLQNKFDIE--NFEELRQNALVAL 77 (114)
T ss_dssp -HHHHHHHHT-------S-SHHHHHHHHHHHHS--------SSHHHHHHHHHHHHHH---TT--T--TTTHHHHHHHHHH
T ss_pred hHHHHHHHHhcCc-CCHHHHHHHHHHHHHHHhcCCC---CcchHHHHHHHHHHHHhhccccCCcc--CHHHHHHHHHHHH
Confidence 5555555554321 1455567777788888875211 12368889999999998877765532 2223446677777
Q ss_pred HHhcccccHHHHH
Q 006253 535 VRCSTDETAPMVM 547 (653)
Q Consensus 535 ~~~~~~~~~~~~~ 547 (653)
+-..|..+.||+.
T Consensus 78 ~v~~P~~~~~~L~ 90 (114)
T PF10193_consen 78 VVAAPEKVAPYLT 90 (114)
T ss_dssp HHHSGGGHHH-HH
T ss_pred HHHhhHHHHHHHH
Confidence 7778877777744
No 389
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=28.42 E-value=3e+02 Score=21.97 Aligned_cols=70 Identities=17% Similarity=0.256 Sum_probs=46.5
Q ss_pred CchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhHh-HHHHHHHhcccCCCCCHHHHHHHHHHHHH
Q 006253 129 WPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVN-KILTAVVQGMNASESNNDVRLAATRALYN 202 (653)
Q Consensus 129 ~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~vr~~a~~~l~~ 202 (653)
-+.++..+...+....+..+-.++.++..++..+. ... ...+. .+.+.+..... ..++.+|....+.+.-
T Consensus 35 a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~-~~~-~~~~~~~~~~~f~~~~~--~~~~~~r~kl~rl~~i 105 (114)
T cd03562 35 AKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVG-RKY-KEFFSEFLVPLFLDAYE--KVDEKTRKKLERLLNI 105 (114)
T ss_pred HHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcc-cch-HHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHH
Confidence 35777777777777788888999999999999873 222 22222 23555555555 4667888766665554
No 390
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=27.93 E-value=5.4e+02 Score=24.55 Aligned_cols=143 Identities=16% Similarity=0.128 Sum_probs=80.1
Q ss_pred HHHHHHHHhcCCCC----hHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhccccc
Q 006253 92 QIKSFILKTLSSPA----HDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAV 167 (653)
Q Consensus 92 ~i~~~ll~~l~~~~----~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~ 167 (653)
...+.+++.+.+++ .......|..++.+++.. ..+++-..+.......=.....-.-.++..+.+.+ +
T Consensus 111 a~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~----~~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f----~ 182 (262)
T PF14225_consen 111 ALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQ----GLPNLARILSSYAKGRFRDKDDFLSQVVSYLREAF----F 182 (262)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhC----CCccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh----C
Confidence 34456666676666 244457788888888542 44555433333322221111122223333444443 2
Q ss_pred chhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q 006253 168 EQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAIS 247 (653)
Q Consensus 168 ~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~ 247 (653)
..+...++..+...+. ...+-+|...++++..++.+++-.-. ...+++..+.++++.+-+. .+++.|-.++
T Consensus 183 -P~~~~~~l~~Ll~lL~--n~~~w~~~~~L~iL~~ll~~~d~~~~---~~~dlispllrlL~t~~~~---eAL~VLd~~v 253 (262)
T PF14225_consen 183 -PDHEFQILTFLLGLLE--NGPPWLRRKTLQILKVLLPHVDMRSP---HGADLISPLLRLLQTDLWM---EALEVLDEIV 253 (262)
T ss_pred -chhHHHHHHHHHHHHh--CCcHHHHHHHHHHHHHHhccccCCCC---cchHHHHHHHHHhCCccHH---HHHHHHHHHH
Confidence 2344556666777776 46678999999999998887642211 2245777777777654433 4566665555
Q ss_pred HHhH
Q 006253 248 STYY 251 (653)
Q Consensus 248 ~~~~ 251 (653)
...+
T Consensus 254 ~~s~ 257 (262)
T PF14225_consen 254 TRSG 257 (262)
T ss_pred hhcc
Confidence 5443
No 391
>cd07354 HN_L-delphilin-R1_like First harmonin_N_like domain (repeat 1) of L-delphilin, and related domains. This subgroup contains the first of two harmonin_N_like domains of an alternatively spliced longer variant of mouse delphilin (L-delphilin, isoform 1), and related domains. Delphilin is a scaffold protein which binds the glutamate receptor delta-2 (GRID2) subunit and the monocarboxylate transporter 2 at the cerebellar parallel fiber-Purkinje cell synapses. The N-terminus of L-delphilin contains this harmonin_N_like domain preceded by a postsynaptic density-95/discs-large/ZO-1 (PDZ) protein-binding domain, PDZ1. L-delphilin, in common with the shorter C-terminal isoforms (S-delphilin/delphilin alpha and delphilin beta) has a second harmonin_N_like domain (not belonging to this subgroup) and a second PDZ domain, PDZ2. This first harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=27.76 E-value=2.3e+02 Score=21.07 Aligned_cols=47 Identities=23% Similarity=0.287 Sum_probs=38.8
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHHHhh-CcchHHHHHHHHHhc
Q 006253 2 SAEVTQILLNAQSVDGTVRKQAEESLKQYQEQ-NLPGFLLSLAGELVN 48 (653)
Q Consensus 2 ~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~-~~~~~~~~l~~il~~ 48 (653)
|++|..=+..++..|++...+-.+.|..+... +.+.|...|..+|..
T Consensus 5 A~eF~~Kvd~iL~~dp~~Ke~l~~aLk~Ya~~k~vd~l~~aL~~~L~~ 52 (80)
T cd07354 5 AQEFSRKVDAILGDDPVKKEQVFAALKQYAADKNVDCLVWALCGLLQT 52 (80)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHhCc
Confidence 45677778888999999999999999988665 678898888888875
No 392
>KOG4346 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.73 E-value=6.7e+02 Score=27.48 Aligned_cols=55 Identities=9% Similarity=0.108 Sum_probs=41.5
Q ss_pred HHHHHHHHHhccccccchhchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Q 006253 503 QEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQ 559 (653)
Q Consensus 503 ~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~ 559 (653)
|..+.-++.++.+.+ +.++.+.|+..+..++...|..+.+...+++..++..-++
T Consensus 507 PaYV~Dl~emL~~~E--~yE~~eaAL~nae~LI~r~pt~~rq~A~eLlq~lLhLqn~ 561 (849)
T KOG4346|consen 507 PAYVADLFEMLLEKE--KYEVFEAALFNAENLINRRPTGFRQIAEELLQRLLHLQNN 561 (849)
T ss_pred chHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHh
Confidence 344555555665444 4678889999999999999999999999988888775443
No 393
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=27.49 E-value=80 Score=28.06 Aligned_cols=30 Identities=20% Similarity=0.432 Sum_probs=18.3
Q ss_pred chHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q 006253 130 PELIGALLSNIHQLPPHTKQATLETLGYIC 159 (653)
Q Consensus 130 ~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~ 159 (653)
++.+..|..++.+++..+|..++.+|..+|
T Consensus 157 ~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 157 PDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp SSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666654
No 394
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=26.96 E-value=5.5e+02 Score=24.33 Aligned_cols=156 Identities=13% Similarity=0.169 Sum_probs=79.9
Q ss_pred CccchHHHHHHHHHhccc--hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhcccc-ccchhchHHH--
Q 006253 452 NQGNCQQIISVLLQSMKD--VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHRE-DAGESRLRTA-- 526 (653)
Q Consensus 452 ~~~~~~~il~~l~~~l~d--~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~-~~~~~~~~~~-- 526 (653)
..+.+..+-..++..|.. +...-+.+..++..+|+.+-. .....+......-+..++..+... .......|..
T Consensus 90 s~~~i~~ig~~l~~~L~~~rHrGAfe~~~~~f~~lc~~l~~--~~~~~l~~LP~~WL~~~l~~i~~~~~~~~~iTRRSAG 167 (255)
T PF10350_consen 90 SPDQIEKIGELLIEQLLEIRHRGAFESVYPGFTALCRRLWS--SNNPELSELPEEWLDELLEAIESKGQQKLSITRRSAG 167 (255)
T ss_pred CHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHHHHHHhcccccccccccccCc
Confidence 345566666666666653 455667777788888877642 112333343444555555555544 1100123321
Q ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHhHHHHHHHH--hCCCcchhhHhhH
Q 006253 527 AYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQK--LGSSEQTKYVFMQ 604 (653)
Q Consensus 527 ~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~~--~~~~~~~~~~~~~ 604 (653)
.=-++..++...+..-.+.+...+..+++..+.. ....++. ....-+-.++.++..+.+. ++.. ..+
T Consensus 168 LP~~i~aiL~ae~~~~~~ll~~~~~~Ll~ia~~~----~~~~~~~-~~d~~qVHAlNiLr~if~ds~L~~~------~~~ 236 (255)
T PF10350_consen 168 LPFLILAILSAEPSNSRPLLHRTMKSLLEIAKSP----STQHEDE-KSDLPQVHALNILRAIFRDSKLSED------VSP 236 (255)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCC----ccccccc-ccchHHHHHHHHHHHHHhcchhHHH------HHH
Confidence 1123333444433332255555555555544332 1111110 0001233478888887774 4444 888
Q ss_pred hHHHHHHHHHHHHhcc
Q 006253 605 YADQMMGLFLRVFAIR 620 (653)
Q Consensus 605 ~~~~i~~~l~~~l~~~ 620 (653)
|+.+.+...++.+.++
T Consensus 237 yi~~~l~lai~~f~s~ 252 (255)
T PF10350_consen 237 YIEDALILAIKGFSSP 252 (255)
T ss_pred HHHHHHHHHHHhCCCc
Confidence 9999988888877654
No 395
>PF11262 Tho2: Transcription factor/nuclear export subunit protein 2; InterPro: IPR021418 THO and TREX form a eukaryotic complex which functions in messenger ribonucleoprotein metabolism and plays a role in preventing the transcription-associated genetic instability [],[]. Tho2, along with four other subunits forms THO []. This entry represents a conserved domain found towards the C terminus of these proteins.
Probab=26.95 E-value=2.1e+02 Score=27.95 Aligned_cols=67 Identities=21% Similarity=0.202 Sum_probs=46.6
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCC--CCHHHHHHHHHHHH
Q 006253 131 ELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASE--SNNDVRLAATRALY 201 (653)
Q Consensus 131 ~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~--~~~~vr~~a~~~l~ 201 (653)
.+...+..++.+++....++|+.+|..+...+ |-. ..+...+...+.+.... + .-.+++..|-..++
T Consensus 227 ~i~~~l~~~L~s~eym~iRNai~vL~~i~~~F-P~v--~~~~~~l~~~l~~l~~~-e~~~R~Dlk~~a~~~~~ 295 (298)
T PF11262_consen 227 RITKALISCLESKEYMHIRNAIIVLKKISPVF-PVV--DDHGEKLEKALEKLLEE-EKGKREDLKLLANSYLG 295 (298)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHHhhC-CCc--HHHHHHHHHHHHHHHHh-cccCcccHHHHHHHHHH
Confidence 45577888898999999999999999999988 653 34555555555555443 3 45566665554443
No 396
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=26.56 E-value=3.5e+02 Score=21.87 Aligned_cols=105 Identities=16% Similarity=0.130 Sum_probs=48.2
Q ss_pred cchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhccCCChHHHHHHHHHHHHhcC---CCC-hHHHH
Q 006253 35 LPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLS---SPA-HDARS 110 (653)
Q Consensus 35 ~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~---~~~-~~vr~ 110 (653)
+|-|+..|+..+.+++.+.+....|....-+.|+++. .|..=-.+.-..+...|+..=. .++ ...|.
T Consensus 1 ~PvYlrDll~~L~~~~~~~e~~e~aL~~a~~LIR~k~---------~fg~el~~~a~eL~~~Ll~L~~~f~~~~Fe~~R~ 71 (114)
T PF10193_consen 1 RPVYLRDLLEYLRSDDEDYEKFEAALKSAEKLIRRKP---------DFGTELSEYAEELLKALLHLQNKFDIENFEELRQ 71 (114)
T ss_dssp ----HHHHHHHHT------S-SHHHHHHHHHHHHS--------------SSHHHHHHHHHHHHHH---TT--TTTTHHHH
T ss_pred CCchHHHHHHHHhcCcCCHHHHHHHHHHHHHHHhcCC---------CCcchHHHHHHHHHHHHhhccccCCccCHHHHHH
Confidence 3778899999888544345555566666666776542 2222122233344444444322 233 57777
Q ss_pred HHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCC--ChhHHHHHHHHHH
Q 006253 111 TASQVVAKVAGIELPHKQWPELIGALLSNIHQL--PPHTKQATLETLG 156 (653)
Q Consensus 111 ~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~--~~~~~~~~l~~l~ 156 (653)
.+..++.... | ..+.+.+.+.+-++ +-..|...+.+++
T Consensus 72 ~alval~v~~----P----~~~~~~L~~~f~~~~~Sl~qR~~iL~~l~ 111 (114)
T PF10193_consen 72 NALVALVVAA----P----EKVAPYLTEEFFSGDYSLQQRMSILSALS 111 (114)
T ss_dssp HHHHHHHHHS----G----GGHHH-HHHHHTTS---THHHHHHHHHHH
T ss_pred HHHHHHHHHh----h----HHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 6666554443 4 26667777776554 4455655566554
No 397
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=26.51 E-value=1e+02 Score=27.35 Aligned_cols=9 Identities=11% Similarity=0.128 Sum_probs=4.6
Q ss_pred HHHHHHHHh
Q 006253 4 EVTQILLNA 12 (653)
Q Consensus 4 ~l~~ll~~~ 12 (653)
.|.+++...
T Consensus 11 ~F~~ll~~~ 19 (187)
T PF06371_consen 11 MFEELLEEL 19 (187)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 445555555
No 398
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=26.18 E-value=2.5e+02 Score=22.48 Aligned_cols=72 Identities=17% Similarity=0.202 Sum_probs=47.9
Q ss_pred hchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHHh
Q 006253 366 PLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNI-ALNFMLTALMQDPNNHVKDTTAWTLGRMFE 439 (653)
Q Consensus 366 ~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~-l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~ 439 (653)
+.++..+.+.+....+..|-.+++.+.+++..++ .....++.. +.+.+...+ ...++.+|.....++.-+.+
T Consensus 36 ~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~-~~~~~~~~~~~~~~f~~~~-~~~~~~~r~kl~rl~~iW~~ 108 (114)
T cd03562 36 KEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVG-RKYKEFFSEFLVPLFLDAY-EKVDEKTRKKLERLLNIWEE 108 (114)
T ss_pred HHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcc-cchHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHccC
Confidence 4566666666666666888899999999998864 333333333 355555556 66778888877777666544
No 399
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.29 E-value=3.3e+02 Score=28.43 Aligned_cols=78 Identities=14% Similarity=0.226 Sum_probs=52.8
Q ss_pred hHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhc-C-CcHHHHHHHHHHHHHHHHHh
Q 006253 173 NKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATL-S-PEVKIRQAAFECLVAISSTY 250 (653)
Q Consensus 173 ~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~-~-~~~~~~~~~~~~l~~l~~~~ 250 (653)
...+-.|...++ ..++.+...|+..|-.|+.-+...|-.......|++-+..... . .+..+|..++..|-.+-..+
T Consensus 37 ~eAvralkKRi~--~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af 114 (470)
T KOG1087|consen 37 KEAVRALKKRLN--SKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQAF 114 (470)
T ss_pred HHHHHHHHHHhc--cCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHHHc
Confidence 356666677777 5666888889998887777655444322223456666655553 3 57889999999888887776
Q ss_pred HH
Q 006253 251 YE 252 (653)
Q Consensus 251 ~~ 252 (653)
+.
T Consensus 115 ~~ 116 (470)
T KOG1087|consen 115 CG 116 (470)
T ss_pred cC
Confidence 53
No 400
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=25.00 E-value=1.2e+02 Score=26.61 Aligned_cols=77 Identities=21% Similarity=0.141 Sum_probs=43.1
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccchhhHHHHHHHHHHHHHhcc
Q 006253 409 IALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGF 488 (653)
Q Consensus 409 ~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~al~~~~~~~ 488 (653)
..+|.++.+. +-.++.-...+...+.+ |.. .-....++.|..... ++.||..|...+..+-+
T Consensus 39 ~aL~~~l~sv-~w~~~~~v~e~~~lL~~---W~~-----------i~~~~aLeLL~~~f~-d~~VR~yAV~~L~~~sd-- 100 (171)
T cd00872 39 QALPKLLLSV-KWNKRDDVAQMYQLLKR---WPK-----------LKPEQALELLDCNFP-DEHVREFAVRCLEKLSD-- 100 (171)
T ss_pred HHHHHHHhhC-CCCCHHHHHHHHHHHHC---CCC-----------CCHHHHHHHCCCcCC-CHHHHHHHHHHHHhCCH--
Confidence 3456666666 54444333333334443 321 122333444433333 48899999988887543
Q ss_pred cCCCCCCCCCchhHHHHHHHHH
Q 006253 489 EDAISPSSPLTPFFQEIVQALL 510 (653)
Q Consensus 489 ~~~~~~~~~l~~~l~~i~~~L~ 510 (653)
+.+..|++++++.|.
T Consensus 101 -------~eL~~yL~QLVQaLK 115 (171)
T cd00872 101 -------DELLQYLLQLVQVLK 115 (171)
T ss_pred -------HHHHHHHHHHHHHHH
Confidence 457788888887764
No 401
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=24.33 E-value=4.7e+02 Score=22.67 Aligned_cols=107 Identities=9% Similarity=0.103 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHhh---C----cchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhccCCChHHH
Q 006253 18 TVRKQAEESLKQYQEQ---N----LPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVK 90 (653)
Q Consensus 18 ~~r~~A~~~L~~~~~~---~----~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~ 90 (653)
+.-.-+.+.+.++.+. . .+.|+...+..+..+..+.++.+.|.-+|.+.+..... .+..+..
T Consensus 32 ~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~--------ly~~V~~--- 100 (160)
T PF11841_consen 32 EILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPK--------LYQLVEQ--- 100 (160)
T ss_pred HHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHH--------HHHHHhc---
Confidence 4444455555555443 1 35788888888876555888988899899887764321 1111111
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHH
Q 006253 91 AQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGAL 136 (653)
Q Consensus 91 ~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l 136 (653)
+--.+.|+..|...+..++..+...+-++...- +...+.++.+.+
T Consensus 101 evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA-~~~~r~~i~~~l 145 (160)
T PF11841_consen 101 EVTLESLIRHLQVSNQEIQTNAIALINALFLKA-DDSKRKEIAETL 145 (160)
T ss_pred cCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHH
Confidence 112356777788888888887777777776654 334565665555
No 402
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [].; GO: 0006364 rRNA processing, 0030688 preribosome, small subunit precursor
Probab=24.27 E-value=5.6e+02 Score=23.55 Aligned_cols=46 Identities=20% Similarity=0.222 Sum_probs=32.3
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHhhC--------cchHHHHHHHHHhcCCCC
Q 006253 7 QILLNAQSVDGTVRKQAEESLKQYQEQN--------LPGFLLSLAGELVNDEKP 52 (653)
Q Consensus 7 ~ll~~~~s~d~~~r~~A~~~L~~~~~~~--------~~~~~~~l~~il~~~~~~ 52 (653)
.+.+.+-|.|+.+|.+|.+.|..+-... .-..+..|...+...+.+
T Consensus 4 ~~~k~LAs~d~~~R~~al~~l~~~l~~~~~~~~~~~~~kLWKGLfy~mWmsDkp 57 (217)
T PF05997_consen 4 KFAKKLASNDKKTRDRALKSLRKWLSKRSQLLTELDMLKLWKGLFYCMWMSDKP 57 (217)
T ss_pred HHHHHhhcCChhHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHhcCCc
Confidence 4567788899999999999998765431 224566677777764433
No 403
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=23.42 E-value=6.4e+02 Score=23.87 Aligned_cols=160 Identities=12% Similarity=0.149 Sum_probs=87.5
Q ss_pred chhhHHHHHHHHHHhhcCC-------CCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccC
Q 006253 380 EWRQREAATYAFGSILEGP-------SPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIIN 452 (653)
Q Consensus 380 ~~~~r~aal~~l~~i~~~~-------~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 452 (653)
-|+.-..+...++.+++.+ ....-...+..+...++..|..-.|...-.++...+..++..+..... ...
T Consensus 60 ~Wr~iKE~s~Ll~~l~~~~~~~~~~~~~~ls~~~i~~ig~~l~~~L~~~rHrGAfe~~~~~f~~lc~~l~~~~~---~~l 136 (255)
T PF10350_consen 60 CWRSIKESSLLLGTLVEKIPLPPDSSNSLLSPDQIEKIGELLIEQLLEIRHRGAFESVYPGFTALCRRLWSSNN---PEL 136 (255)
T ss_pred HHHHHHHHHHHHHHHHHhccccCcccccCCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcCCC---chH
Confidence 3665555556666666321 011112334455555544442446777777888888888887752110 012
Q ss_pred ccchHHHHHHHHHhccch-h----hHHHHHH--HHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccch-----
Q 006253 453 QGNCQQIISVLLQSMKDV-P----NVAEKAC--GALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGE----- 520 (653)
Q Consensus 453 ~~~~~~il~~l~~~l~d~-~----~v~~~a~--~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~----- 520 (653)
...-...+..+++.+.+. . ..|..|. .++..++.... ..-.+.++..|..|+++...+...+
T Consensus 137 ~~LP~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~ae~------~~~~~ll~~~~~~Ll~ia~~~~~~~~~~~~ 210 (255)
T PF10350_consen 137 SELPEEWLDELLEAIESKGQQKLSITRRSAGLPFLILAILSAEP------SNSRPLLHRTMKSLLEIAKSPSTQHEDEKS 210 (255)
T ss_pred HHhHHHHHHHHHHHHhcccccccccccccCcHHHHHHHHHhcCC------CcchhHHHHHHHHHHHHhcCCccccccccc
Confidence 234455666666666642 1 2343333 44555555422 1122888999999999887654310
Q ss_pred hchHHHHHHHHHHHHHhcc--cccHHHHHH
Q 006253 521 SRLRTAAYETLNEVVRCST--DETAPMVMQ 548 (653)
Q Consensus 521 ~~~~~~~~~~l~~l~~~~~--~~~~~~~~~ 548 (653)
..-+..++.+|..+..... ....||+..
T Consensus 211 d~~qVHAlNiLr~if~ds~L~~~~~~yi~~ 240 (255)
T PF10350_consen 211 DLPQVHALNILRAIFRDSKLSEDVSPYIED 240 (255)
T ss_pred chHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 2356678888888876432 344555544
No 404
>PHA02836 putative transmembrane protein; Provisional
Probab=23.20 E-value=76 Score=25.84 Aligned_cols=34 Identities=21% Similarity=0.117 Sum_probs=0.0
Q ss_pred HHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCC
Q 006253 388 TYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDP 422 (653)
Q Consensus 388 l~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~ 422 (653)
+-.+|.+++.+++.....|++.++|.+...+ +|.
T Consensus 108 iG~~gyise~wGk~k~~kYI~~im~l~fnfl-~dn 141 (153)
T PHA02836 108 IGIIGYISECCGKYGLEKYIQDLLLLLFNFL-DDN 141 (153)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHc-ccc
No 405
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=23.15 E-value=9.6e+02 Score=28.07 Aligned_cols=140 Identities=11% Similarity=0.080 Sum_probs=0.0
Q ss_pred CChhHHHHHHHHHHHHHhhhcccccc----hhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHH
Q 006253 143 LPPHTKQATLETLGYICEEVSSDAVE----QDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERD 218 (653)
Q Consensus 143 ~~~~~~~~~l~~l~~l~~~~~~~~~~----~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 218 (653)
+.....+.++.+|..++... |+.-+ ....-..++.+...+.. ..++.++..|++.+...-.+-+-.-.-.. .
T Consensus 1737 Ps~~~v~m~LtAL~Nli~~n-PdlasvfgSe~~lig~F~l~~~~lr~-~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~--~ 1812 (2235)
T KOG1789|consen 1737 PTETKVLMTLTALANLVSAN-PDLASVFGSEILLIGNFPLLITYLRC-RKHPKLQILALQVILLATANKECVTDLAT--C 1812 (2235)
T ss_pred ChHHHHHHHHHHHHHHHhhC-cchhhhccchhhhhcccHHHHHHHHH-cCCchHHHHHHHHHHHHhcccHHHHHHHh--h
Q ss_pred HHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhHH--HHHHHHHHHhhcCChhHHHHHHHhHHHhh
Q 006253 219 YIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQ--DIFNITAKAVREDEEPVALQAIEFWSSVC 288 (653)
Q Consensus 219 ~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~--~l~~~~~~~~~~~~~~~~~~a~~~~~~~~ 288 (653)
..+..++.++ +.-|..|..++..|..+.+ .++.....+. .++.+.--......+.+|.++.+++..+.
T Consensus 1813 ~vL~~LL~lL-HS~PS~R~~vL~vLYAL~S-~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~ 1882 (2235)
T KOG1789|consen 1813 NVLTTLLTLL-HSQPSMRARVLDVLYALSS-NGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQ 1882 (2235)
T ss_pred hHHHHHHHHH-hcChHHHHHHHHHHHHHhc-CcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhh
No 406
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=22.54 E-value=2e+02 Score=27.38 Aligned_cols=101 Identities=18% Similarity=0.259 Sum_probs=62.8
Q ss_pred CChhHHHHHHHHHhhhcchhhhhhHHHhhhhccCCChHHHHHHHHHHHHhcCCC---ChHHHHHHHHHHHHHHhhhc--C
Q 006253 51 KPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSP---AHDARSTASQVVAKVAGIEL--P 125 (653)
Q Consensus 51 ~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~---~~~vr~~~~~~l~~ia~~~~--~ 125 (653)
.++..+++++.++-|.+...... .|- ++... ..+.+.+.....+. ++.+|.++|..+-.++.... +
T Consensus 122 ~~~~~~ml~lR~l~NlF~~~~~~-------~~~-~~~~~-~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~ 192 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSHPPGR-------QLL-LSHFD-SSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNR 192 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTSCCCH-------HHH-HCTHH-TCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred CcHHHHHHHHHHHHHhhCCCccH-------HHH-Hhccc-chHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcC
Confidence 68899999999999988643210 110 11100 12333333333333 67899999999887765432 2
Q ss_pred -CCCCc-hHHHHHHHhhcC--CChhHHHHHHHHHHHHHh
Q 006253 126 -HKQWP-ELIGALLSNIHQ--LPPHTKQATLETLGYICE 160 (653)
Q Consensus 126 -~~~~~-~l~~~l~~~l~~--~~~~~~~~~l~~l~~l~~ 160 (653)
...|. +++..+.+.+.. .+++....++.+++.++.
T Consensus 193 ~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~ 231 (268)
T PF08324_consen 193 SDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLS 231 (268)
T ss_dssp S-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHC
T ss_pred CChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhc
Confidence 12343 477777775433 588899999999999883
No 407
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=22.16 E-value=5.4e+02 Score=22.52 Aligned_cols=51 Identities=16% Similarity=0.181 Sum_probs=33.6
Q ss_pred hccCCChHHHHHHHHHHHHhcCC--CChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCC
Q 006253 81 RWLSLDSSVKAQIKSFILKTLSS--PAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQL 143 (653)
Q Consensus 81 ~~~~l~~~~~~~i~~~ll~~l~~--~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~ 143 (653)
.|..++++. .++.|.. .+..||..|..++..+.. +..-.++++|+|++.-+
T Consensus 72 ~W~~i~~~~-------aLeLL~~~f~~~~VR~yAV~~L~~~sd-----~eL~~yL~QLVQaLKyE 124 (166)
T cd00870 72 KWAKIDIED-------ALELLSPYFTNPVVRKYAVSRLKLASD-----EELLLYLLQLVQALKYE 124 (166)
T ss_pred cCCCCCHHH-------HHHHcCccCCCHHHHHHHHHHHHhCCH-----HHHHHHHHHHHHHHHhc
Confidence 366666532 2455554 357999999999999643 24567777777777543
No 408
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=22.10 E-value=1.2e+03 Score=26.40 Aligned_cols=507 Identities=12% Similarity=0.079 Sum_probs=0.0
Q ss_pred HHHHHHHHhhCcchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhccCCChHHHHHHHHHHHHhcCC
Q 006253 24 EESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSS 103 (653)
Q Consensus 24 ~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~ 103 (653)
...++++.+.-+++-+..+.+.+. +.+.+--.-.+.-.+..+. ..-+......+.-.+.++|..
T Consensus 25 ~~~~~~~~~~~~~e~V~~f~~~l~--~wd~~rI~~~L~~~~~~~~--------------~~~~~~~~~~~~~aiyE~L~~ 88 (727)
T PF12726_consen 25 KSLRQRFAESFPEENVDQFFNMLD--NWDIQRILPGLDKAKSILE--------------SIEPMTRSRALLLAIYECLCN 88 (727)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhc--------------cCCCCCccchHHHHHHHHHhC
Q ss_pred C-----ChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhh---hcccccchhhHhHH
Q 006253 104 P-----AHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEE---VSSDAVEQDHVNKI 175 (653)
Q Consensus 104 ~-----~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~---~~~~~~~~~~~~~l 175 (653)
+ ++.+|...-.++..+...... ..+.+++|.+...+-++++..|.-|...+..+-.. +..+.++......+
T Consensus 89 p~lLr~~~~l~~~F~~~f~~~~~~~~~-~~~~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~~~~~t~~~~~~av~~~l 167 (727)
T PF12726_consen 89 PALLRDDEELRELFDAIFSSLQSKKPL-KLPKELLPGMTYFLFDGNPERRRWAERWWQRLKRPPYSITDEEFDWAVLDEL 167 (727)
T ss_pred HHHHcCcHHHHHHHHHHHHHHhccCCc-cccccccchhhhhhhcCCHHHHHHHHHHHHHcCCCccCCchhhhhHHHHHHH
Q ss_pred HHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHH----HHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhH
Q 006253 176 LTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERD----YIMRVVCEATLSPEVKIRQAAFECLVAISSTYY 251 (653)
Q Consensus 176 ~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~----~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~ 251 (653)
...+... +....++..-..--..+..++..++........+. .+...++..+..+..+.....+++|..+.+..+
T Consensus 168 ~~~l~~i-~~~~~~~~~~~~fW~g~~~Il~~ld~~~i~~~l~~~~~~~i~~L~~~hL~~~~~~~l~~lL~~l~~lL~k~~ 246 (727)
T PF12726_consen 168 SSHLYRI-SPNNYNPDSVIRFWSGFSLILRLLDKEQITHSLRALELDPIYRLLLNHLSSNLSPPLPILLRCLSILLEKLG 246 (727)
T ss_pred HHHHHHh-ccCCCChhHHHHHHHHHHHHHHHccHHHHHHHHhccccchHHHHHHHHhhcccchhHHHHHHHHHHHHHhCH
Q ss_pred HhhHHhHHHHHHHHH--------------HHhhcCChhHHH----HHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhH
Q 006253 252 EKLAPYIQDIFNITA--------------KAVREDEEPVAL----QAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYF 313 (653)
Q Consensus 252 ~~~~~~l~~l~~~~~--------------~~~~~~~~~~~~----~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (653)
..|-...+.+-|..+ ....+.+..... ..+..+.-+...- ...-
T Consensus 247 ~~FW~~~~~~~p~~ild~If~np~f~~~L~~~~~~~~~~~~~~~~~~~sWi~pf~~SL------------------~~~~ 308 (727)
T PF12726_consen 247 SDFWDAMGPISPQVILDQIFDNPAFKKLLLQSQEDEISESDDDLPDLLSWISPFLRSL------------------SPSQ 308 (727)
T ss_pred HHHhcccCCCCHHHHHHHHhCChHHHHHHHhhccCCccccchhhHHHHHHHHHHHHHh------------------cccc
Q ss_pred HHhhhhhhHHHHHHHhhhccCC-----------------------ccCCCccccHhhhHHHHHHHHHhhc----------
Q 006253 314 IKHALPVLVPLLLETLLKQEED-----------------------QDQDEGAWNIAMAGGTCLGLVARTV---------- 360 (653)
Q Consensus 314 ~~~~l~~l~~~l~~~l~~~~ed-----------------------~~~d~~~~~~r~~a~~~L~~l~~~~---------- 360 (653)
-.+...+++..++..++..... +++..+.-..+....+++..+....
T Consensus 309 ~~~~~~~l~~~Ll~~~q~~~~~~~~r~~c~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (727)
T PF12726_consen 309 RSQACRKLLHFLLERLQHDRFPDEARAACLRAGLDALLSTLRSFNDNERSDFSTALITINDTRNLVSNYIIRDAIIPAAK 388 (727)
T ss_pred hhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhcccccccccchhHhhHHHHHHHHHhhhhhhhccChhh
Q ss_pred -------CCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 006253 361 -------GDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWT 433 (653)
Q Consensus 361 -------~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~ 433 (653)
...+....+..+...+.-+--...+........ .........+.+.+...+...+ ...++..-...+.+
T Consensus 389 ~~~~~~~~~~~~~~a~~vi~~~l~~D~~~l~~~~~~l~~~---~~~~~~~~~~~~~lW~~l~~~~-~~~~~~la~~lL~~ 464 (727)
T PF12726_consen 389 FKIEGWSNSSVSNSAMKVIRNALALDILSLCEESQALLRG---KPLQPAVSRISPNLWKALLKSL-DSDNPDLAKALLKS 464 (727)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCcCCcchhhhHHHHHHHHHhh-cCCChHHHHHHHHH
Q ss_pred HHHHHhhhccCCCCccccCccchHHHHHHHHHhccchhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHH--HHHHHHHH
Q 006253 434 LGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQ--EIVQALLT 511 (653)
Q Consensus 434 l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~--~i~~~L~~ 511 (653)
+..+.....-. +....+-+.+.....-..++ .++...+..+.++.+ ..++.+...+. .....+..
T Consensus 465 ~~~l~~l~~~~----~~~~~~~~~~~~~~~N~~~~---~~~~~~~~il~rls~------~~~~~L~~l~~d~~~~~~i~s 531 (727)
T PF12726_consen 465 LSPLIGLEKFP----PKKEKDELDPAKTQFNKSLG---QITDLISQILERLSD------FDPSHLKELLSDPDAAQAIWS 531 (727)
T ss_pred HHHhccccccC----CcccccCcchHHHHHHHHHH---HHHHHHHHHHHHHhc------CCHHHHHHHHcCcchhhHHHh
Q ss_pred hccccccchhchHHHHHHHHHHHHHhcc------cccHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHhHH
Q 006253 512 VTHREDAGESRLRTAAYETLNEVVRCST------DETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCL 585 (653)
Q Consensus 512 ~l~~~~~~~~~~~~~~~~~l~~l~~~~~------~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~i 585 (653)
++=.++ ..++..|.+.+.......| .-+..++...+..+...+++..+.....+--+ ++.|+
T Consensus 532 ~lfsp~---~~l~qaA~~llk~~~d~~~R~e~i~~ll~~~~~~tL~ai~~~l~~~~~~~~~~p~pr---------~vr~~ 599 (727)
T PF12726_consen 532 LLFSPD---DDLYQAAQDLLKQAFDVDGRLEAIQALLQSNFSPTLSAINWSLRQLTKLKFFEPCPR---------MVRCL 599 (727)
T ss_pred heeCCC---hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhcchHH---------HHHHH
Q ss_pred HHHHHHhCCC
Q 006253 586 QVIIQKLGSS 595 (653)
Q Consensus 586 ~~i~~~~~~~ 595 (653)
.-|..++...
T Consensus 600 ~DIi~~Lcdp 609 (727)
T PF12726_consen 600 MDIIEVLCDP 609 (727)
T ss_pred HHHHHHHcCC
No 409
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=21.40 E-value=4.1e+02 Score=21.73 Aligned_cols=62 Identities=15% Similarity=0.200 Sum_probs=41.4
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhh---cCCChhHHHHHHHHHHHHHhhh
Q 006253 98 LKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNI---HQLPPHTKQATLETLGYICEEV 162 (653)
Q Consensus 98 l~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l---~~~~~~~~~~~l~~l~~l~~~~ 162 (653)
-++.++++... -...+..|+...+....++.++..|...+ ...++....-++.+|..++.+-
T Consensus 9 ~eAT~~d~~gp---~~~~l~eIa~~t~~~~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG 73 (125)
T PF01417_consen 9 REATSNDPWGP---PGKLLAEIAQLTYNSKDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNG 73 (125)
T ss_dssp HHHTSSSSSS-----HHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS
T ss_pred HHHcCCCCCCc---CHHHHHHHHHHHhccccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHC
Confidence 34555544322 33444566666554346788999999998 4457778888999999998876
No 410
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=20.77 E-value=1.8e+02 Score=21.24 Aligned_cols=31 Identities=26% Similarity=0.264 Sum_probs=26.1
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHhhh
Q 006253 132 LIGALLSNIHQLPPHTKQATLETLGYICEEV 162 (653)
Q Consensus 132 l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~ 162 (653)
-++.++....|..+..|..|+.+|+.|+...
T Consensus 40 Ti~El~~L~RSsv~~QR~~al~~L~~Il~~~ 70 (73)
T PF08620_consen 40 TIQELFHLSRSSVPSQRCIALQTLGRILYRA 70 (73)
T ss_pred CHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 4677888888999999999999999888764
No 411
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=20.47 E-value=2.9e+02 Score=21.84 Aligned_cols=56 Identities=21% Similarity=0.212 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhhhcccccchhhHhH--HHHHHHhcccCCCCCHHHHHHHHHHHHHHHHh
Q 006253 148 KQATLETLGYICEEVSSDAVEQDHVNK--ILTAVVQGMNASESNNDVRLAATRALYNALGF 206 (653)
Q Consensus 148 ~~~~l~~l~~l~~~~~~~~~~~~~~~~--l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~ 206 (653)
|...+.+++.++... +. . ++.+.. =+|.+++...-++.+|-+|..|+-|+..++.-
T Consensus 3 K~~lvrlianl~~~~-~~-~-Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~ 60 (102)
T PF09759_consen 3 KRDLVRLIANLCYKN-KE-V-QDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEG 60 (102)
T ss_pred HHHHHHHHHHHHhCC-HH-H-HHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhC
Confidence 445566777766554 22 1 232221 26777766655578999999999999998764
No 412
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=20.30 E-value=5.7e+02 Score=22.13 Aligned_cols=117 Identities=15% Similarity=0.185 Sum_probs=54.0
Q ss_pred HHHHHHhhhcchhhhhhHHHhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCC---CCCchHHH
Q 006253 58 LAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPH---KQWPELIG 134 (653)
Q Consensus 58 ~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~---~~~~~l~~ 134 (653)
++..+|.+.++.+ +..+..|.+.+++.+.............+++.+++.. |. +.|.. +.
T Consensus 37 LG~~IL~~~fk~h----------------~~~r~~Ile~l~~rI~~~s~~~~~~~idlL~~lv~~~-p~~vle~~~~-l~ 98 (158)
T PF14676_consen 37 LGIQILLELFKVH----------------EMIRSEILEQLLNRIVTKSSSPSSQYIDLLSELVRKA-PLTVLECSSK-LK 98 (158)
T ss_dssp HHHHHHHHHHHH-----------------GGGHHHHHHHHHHHHHH--SS--HHHHHHHHHHHHH--HHHHS-S-HH-HH
T ss_pred HHHHHHHHHHHHh----------------HHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHC-hHHHHHHHHH-HH
Confidence 6777777777643 2334455555555544332222234567888887764 31 23322 23
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHH
Q 006253 135 ALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRAL 200 (653)
Q Consensus 135 ~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l 200 (653)
.+++.+..-..++...-+.++.=+++.. ...-+.++-.+-+.+- ..+.+.|..|..-+
T Consensus 99 ~~ld~l~~lp~~~a~~ll~Al~PLi~~s------~~lrd~lilvLRKamf--~r~~~~R~~Av~Gf 156 (158)
T PF14676_consen 99 ELLDYLSFLPGDVAIGLLRALLPLIKFS------PSLRDSLILVLRKAMF--SRELDARQMAVNGF 156 (158)
T ss_dssp GGGGGTTTS-HHHHHHHHHHHHHHHTT-------HHHHHHHHHHHHHHTT---SSHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHhcC------HHHHHHHHHHHHHHHc--cccHHHHHHHHHHh
Confidence 3333333334444333333333333321 1223445555556665 45677777776544
No 413
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=20.26 E-value=1.1e+03 Score=25.28 Aligned_cols=145 Identities=12% Similarity=0.117 Sum_probs=71.6
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHhhCcchHHH---------HHHHHHhcCCC--ChhHHHHHHHHHhhhcchhhhhh
Q 006253 6 TQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLL---------SLAGELVNDEK--PVESRKLAGLILKNALDAKEQHR 74 (653)
Q Consensus 6 ~~ll~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~---------~l~~il~~~~~--~~~~r~~a~~~l~~~i~~~~~~~ 74 (653)
.++.+.+.++++..+-.|-.+|.++... +.|.. .|.+++.+++. ....-..++..+...+..
T Consensus 86 ~~i~e~l~~~~~~~~~~a~k~l~sls~d--~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmeh----- 158 (713)
T KOG2999|consen 86 KRIMEILTEGNNISKMEALKELDSLSLD--PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEH----- 158 (713)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHhhcccc--HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhh-----
Confidence 4677788888887777777777766443 33332 34455555332 122222222222222221
Q ss_pred HHHhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCC---chHHHHHHHhhcCCChhHHHHH
Q 006253 75 KFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQW---PELIGALLSNIHQLPPHTKQAT 151 (653)
Q Consensus 75 ~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~---~~l~~~l~~~l~~~~~~~~~~~ 151 (653)
....|..++......+-.-. .....+..+-..+...+-.+.........| .-.++.|+..++..+..+...|
T Consensus 159 ---gvvsW~~~~~~fV~~~a~~V--~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~a 233 (713)
T KOG2999|consen 159 ---GVVSWESVSNDFVVSMASYV--NAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCA 233 (713)
T ss_pred ---ceeeeeecccHHHHHHHHHH--hhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHH
Confidence 12467776654443332222 122222233333333333332211001122 2356777777777776666668
Q ss_pred HHHHHHHHhhh
Q 006253 152 LETLGYICEEV 162 (653)
Q Consensus 152 l~~l~~l~~~~ 162 (653)
+..+..+....
T Consensus 234 ial~nal~~~a 244 (713)
T KOG2999|consen 234 IALLNALFRKA 244 (713)
T ss_pred HHHHHHHHhhC
Confidence 87887777766
Done!