Query 006253
Match_columns 653
No_of_seqs 176 out of 1888
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 20:04:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006253.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006253hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bpt_A Importin beta-1 subunit 100.0 1.7E-57 5.7E-62 516.9 67.3 630 3-652 4-643 (861)
2 4fdd_A Transportin-1; heat rep 100.0 4E-57 1.4E-61 510.4 56.0 588 3-651 13-673 (852)
3 1qgr_A Protein (importin beta 100.0 4.4E-55 1.5E-59 497.9 61.4 634 3-652 1-653 (876)
4 1wa5_C Importin alpha RE-expor 100.0 2.5E-46 8.5E-51 425.9 53.3 593 3-649 5-682 (960)
5 1ibr_B P95, importin beta-1 su 100.0 1.2E-46 4.2E-51 396.1 43.4 456 3-468 1-461 (462)
6 2x1g_F Cadmus; transport prote 100.0 1.4E-43 4.7E-48 405.5 45.8 601 4-652 8-738 (971)
7 2x19_B Importin-13; nuclear tr 100.0 2.3E-42 7.7E-47 395.9 55.6 599 4-651 25-729 (963)
8 3m1i_C Exportin-1; heat repeat 100.0 1E-41 3.5E-46 391.1 47.1 562 3-614 16-694 (1049)
9 4hat_C Exportin-1; heat repeat 100.0 6E-39 2E-43 358.6 45.1 564 4-619 17-699 (1023)
10 3ibv_A Exportin-T; karyopherin 100.0 7.9E-38 2.7E-42 349.8 48.5 601 3-652 6-746 (980)
11 1u6g_C TIP120 protein, CAND1; 100.0 1.2E-36 4.1E-41 356.6 43.1 563 3-643 6-685 (1230)
12 3gjx_A Exportin-1; transport, 100.0 4E-35 1.4E-39 325.3 44.7 573 4-618 29-724 (1073)
13 2bpt_A Importin beta-1 subunit 100.0 1.6E-32 5.6E-37 311.5 54.9 565 7-652 99-727 (861)
14 4fdd_A Transportin-1; heat rep 100.0 4.4E-33 1.5E-37 314.2 45.6 566 8-652 95-715 (852)
15 1b3u_A Protein (protein phosph 100.0 6.6E-32 2.3E-36 292.9 39.2 534 4-644 11-555 (588)
16 1qgr_A Protein (importin beta 100.0 6.2E-30 2.1E-34 290.9 49.9 566 8-652 95-738 (876)
17 1u6g_C TIP120 protein, CAND1; 100.0 1.7E-30 5.9E-35 304.5 45.3 537 39-652 8-614 (1230)
18 1b3u_A Protein (protein phosph 100.0 4.8E-30 1.6E-34 278.3 38.9 530 4-636 49-586 (588)
19 3a6p_A Exportin-5; exportin-5, 100.0 4.6E-29 1.6E-33 286.8 39.3 511 1-559 9-682 (1204)
20 1wa5_C Importin alpha RE-expor 99.9 1.1E-16 3.8E-21 182.1 53.3 488 15-559 49-652 (960)
21 1ibr_B P95, importin beta-1 su 99.8 2.9E-18 1E-22 179.6 34.2 405 96-557 5-460 (462)
22 2x19_B Importin-13; nuclear tr 99.8 3.6E-16 1.2E-20 178.9 51.7 563 5-641 105-756 (963)
23 2vgl_B AP-2 complex subunit be 99.8 7.9E-18 2.7E-22 180.5 33.9 512 4-635 14-530 (591)
24 2x1g_F Cadmus; transport prote 99.8 1.6E-17 5.6E-22 189.9 37.4 566 5-642 87-765 (971)
25 2jdq_A Importin alpha-1 subuni 99.8 5.8E-18 2E-22 176.6 26.4 400 94-536 22-443 (450)
26 2vgl_B AP-2 complex subunit be 99.8 1.6E-16 5.5E-21 170.3 36.7 441 3-542 49-499 (591)
27 2jdq_A Importin alpha-1 subuni 99.8 9E-18 3.1E-22 175.2 24.2 403 39-487 22-444 (450)
28 1wa5_B Importin alpha subunit; 99.8 1.9E-17 6.5E-22 176.1 25.1 400 94-537 89-511 (530)
29 4hat_C Exportin-1; heat repeat 99.8 2E-14 6.7E-19 161.2 48.4 587 17-650 114-799 (1023)
30 1wa5_B Importin alpha subunit; 99.7 3E-16 1E-20 166.9 26.0 407 36-487 86-511 (530)
31 4b8j_A Importin subunit alpha- 99.7 2.1E-16 7.1E-21 168.2 23.1 413 176-646 76-506 (528)
32 3m1i_C Exportin-1; heat repeat 99.7 1E-13 3.5E-18 159.1 46.4 575 16-645 113-841 (1049)
33 3ibv_A Exportin-T; karyopherin 99.7 9E-14 3.1E-18 155.9 42.5 573 5-646 90-777 (980)
34 1w63_A Adapter-related protein 99.7 5.6E-14 1.9E-18 151.0 38.7 476 41-636 74-576 (618)
35 2z6g_A B-catenin; FULL-length, 99.7 1.1E-14 3.9E-19 160.7 31.9 483 94-636 117-621 (780)
36 2qk1_A Protein STU2; STU2P, XM 99.7 7.5E-16 2.6E-20 144.5 18.3 213 363-609 12-234 (249)
37 4b8j_A Importin subunit alpha- 99.7 4.9E-14 1.7E-18 149.8 34.2 392 3-440 74-497 (528)
38 1w63_A Adapter-related protein 99.7 1.2E-13 3.9E-18 148.6 36.4 448 5-536 72-577 (618)
39 2z6g_A B-catenin; FULL-length, 99.7 2.9E-14 9.8E-19 157.5 31.9 468 7-541 154-668 (780)
40 1jdh_A Beta-catenin; beta-cate 99.7 2.8E-13 9.4E-18 144.3 36.7 470 7-534 21-528 (529)
41 2z6h_A Catenin beta-1, beta-ca 99.7 8.9E-14 3.1E-18 151.2 33.3 467 6-539 17-530 (644)
42 3now_A UNC-45 protein, SD10334 99.7 6.9E-14 2.3E-18 150.4 31.4 464 14-537 258-783 (810)
43 3now_A UNC-45 protein, SD10334 99.7 1.5E-13 5.3E-18 147.7 33.9 522 36-638 147-738 (810)
44 2z6h_A Catenin beta-1, beta-ca 99.6 6.9E-14 2.4E-18 152.0 29.5 476 93-637 15-527 (644)
45 3gjx_A Exportin-1; transport, 99.6 9.5E-11 3.2E-15 130.8 52.0 591 16-651 125-826 (1073)
46 2qk2_A LP04448P; mini spindles 99.6 1E-14 3.5E-19 137.6 16.7 209 362-612 10-222 (242)
47 2vgl_A Adaptor protein complex 99.6 1E-11 3.5E-16 132.9 39.5 444 5-534 76-587 (621)
48 3ul1_B Importin subunit alpha- 99.6 6.7E-13 2.3E-17 139.6 29.6 390 4-439 58-478 (510)
49 2qk2_A LP04448P; mini spindles 99.6 6.9E-14 2.4E-18 131.8 17.3 198 341-560 27-230 (242)
50 2vgl_A Adaptor protein complex 99.6 5.1E-11 1.7E-15 127.5 41.3 480 39-636 76-588 (621)
51 3tpo_A Importin subunit alpha- 99.6 2.9E-12 1E-16 135.5 31.5 389 4-438 77-496 (529)
52 3tpo_A Importin subunit alpha- 99.6 2.1E-13 7.1E-18 144.4 21.5 366 129-539 74-452 (529)
53 1jdh_A Beta-catenin; beta-cate 99.6 1.8E-12 6.2E-17 137.9 28.8 476 91-635 16-528 (529)
54 3ul1_B Importin subunit alpha- 99.5 1.1E-12 3.8E-17 137.9 25.9 397 39-486 59-478 (510)
55 2qk1_A Protein STU2; STU2P, XM 99.5 1.8E-13 6.1E-18 128.3 17.6 196 341-549 28-234 (249)
56 1oyz_A Hypothetical protein YI 99.3 3.6E-10 1.2E-14 109.0 23.2 253 94-435 25-278 (280)
57 1oyz_A Hypothetical protein YI 99.3 8.4E-10 2.9E-14 106.4 25.2 252 132-482 24-278 (280)
58 2iw3_A Elongation factor 3A; a 99.3 9.4E-09 3.2E-13 112.4 33.6 305 94-488 16-326 (986)
59 1xm9_A Plakophilin 1; armadill 99.3 2.6E-09 9E-14 110.3 27.6 354 133-536 4-449 (457)
60 3l6x_A Catenin delta-1; cateni 99.2 1.3E-08 4.6E-13 105.8 27.6 365 127-536 43-476 (584)
61 4db8_A Armadillo-repeat protei 99.2 3.6E-10 1.2E-14 107.2 14.0 231 220-486 13-251 (252)
62 4hxt_A De novo protein OR329; 99.1 1.3E-09 4.3E-14 103.3 17.3 232 221-488 4-243 (252)
63 3a6p_A Exportin-5; exportin-5, 99.1 4.4E-07 1.5E-11 104.8 41.0 447 15-515 108-682 (1204)
64 4db8_A Armadillo-repeat protei 99.1 1.1E-09 3.7E-14 103.9 15.7 231 176-439 14-251 (252)
65 1xm9_A Plakophilin 1; armadill 99.1 7.7E-09 2.6E-13 106.8 23.1 365 95-486 5-449 (457)
66 4hxt_A De novo protein OR329; 99.1 5.4E-09 1.9E-13 98.9 20.0 233 4-253 3-246 (252)
67 3opb_A SWI5-dependent HO expre 99.1 1.7E-07 5.9E-12 99.0 31.8 404 85-518 285-761 (778)
68 3l6x_A Catenin delta-1; cateni 99.1 4.1E-08 1.4E-12 102.1 26.8 369 94-486 50-476 (584)
69 2iw3_A Elongation factor 3A; a 99.1 6.1E-09 2.1E-13 113.8 21.1 268 219-539 54-327 (986)
70 3ltm_A Alpha-REP4; protein eng 99.1 3.6E-09 1.2E-13 97.1 15.6 188 174-442 19-206 (211)
71 3ltj_A Alpharep-4; protein eng 99.0 1.1E-08 3.9E-13 92.9 17.3 187 172-439 12-198 (201)
72 3ltm_A Alpha-REP4; protein eng 99.0 3.9E-08 1.3E-12 90.1 19.2 187 4-251 20-206 (211)
73 3nmz_A APC variant protein; pr 99.0 1.9E-07 6.6E-12 94.8 25.1 312 131-487 70-451 (458)
74 3ltj_A Alpharep-4; protein eng 99.0 5.9E-08 2E-12 88.1 19.5 182 4-246 15-196 (201)
75 4db6_A Armadillo repeat protei 98.9 1.3E-08 4.4E-13 93.3 12.2 194 92-289 12-209 (210)
76 2db0_A 253AA long hypothetical 98.9 6.1E-07 2.1E-11 74.9 20.3 215 218-486 31-246 (253)
77 3opb_A SWI5-dependent HO expre 98.8 1.6E-05 5.5E-10 84.3 34.1 473 93-638 133-684 (778)
78 2db0_A 253AA long hypothetical 98.8 1.6E-06 5.4E-11 72.5 20.8 215 130-395 31-245 (253)
79 4db6_A Armadillo repeat protei 98.8 8.2E-08 2.8E-12 87.9 14.6 193 218-439 11-209 (210)
80 1xqr_A HSPBP1 protein; armadil 98.7 2.7E-07 9.3E-12 88.2 16.5 235 35-287 26-285 (296)
81 3nmz_A APC variant protein; pr 98.7 2E-06 6.9E-11 87.3 23.3 318 92-441 70-452 (458)
82 4ffb_C Protein STU2; tubulin f 98.6 5.9E-07 2E-11 85.9 15.8 202 341-561 21-241 (278)
83 1xqr_A HSPBP1 protein; armadil 98.6 5.5E-07 1.9E-11 86.1 14.0 149 370-537 84-239 (296)
84 2of3_A ZYG-9; multifunctional 98.6 3.2E-06 1.1E-10 78.0 17.4 180 230-442 57-239 (266)
85 4ady_A RPN2, 26S proteasome re 98.5 6.1E-05 2.1E-09 81.7 29.3 317 130-534 391-717 (963)
86 4ady_A RPN2, 26S proteasome re 98.5 0.00012 4.2E-09 79.4 29.8 307 95-484 395-717 (963)
87 3nmw_A APC variant protein; AR 98.4 8.1E-06 2.8E-10 80.3 17.1 258 18-290 47-335 (354)
88 3nmw_A APC variant protein; AR 98.4 2.8E-05 9.6E-10 76.4 20.9 229 188-442 96-337 (354)
89 3b2a_A TON_1937, putative unch 98.4 2.8E-05 9.4E-10 68.3 17.8 216 218-479 32-254 (265)
90 2of3_A ZYG-9; multifunctional 98.3 7.7E-05 2.6E-09 68.8 20.4 179 8-207 51-238 (266)
91 3tjz_B Coatomer subunit gamma; 98.3 9.7E-06 3.3E-10 78.6 15.0 282 98-442 31-319 (355)
92 3b2a_A TON_1937, putative unch 98.3 0.00065 2.2E-08 59.8 24.0 148 130-289 32-179 (265)
93 4ffb_C Protein STU2; tubulin f 98.2 0.00011 3.9E-09 69.9 19.9 189 81-288 8-211 (278)
94 4gmo_A Putative uncharacterize 98.2 0.00038 1.3E-08 75.4 25.7 155 132-291 36-216 (684)
95 1vsy_5 Proteasome activator BL 98.1 0.00013 4.6E-09 81.1 20.9 408 92-540 508-970 (997)
96 1te4_A Conserved protein MTH18 98.1 9.9E-07 3.4E-11 73.4 2.7 121 364-533 9-130 (131)
97 3oc3_A Helicase MOT1, MOT1; re 98.1 0.00013 4.6E-09 72.5 17.0 161 341-535 240-403 (800)
98 3oc3_A Helicase MOT1, MOT1; re 98.0 0.00077 2.6E-08 67.2 20.8 252 128-435 170-432 (800)
99 3grl_A General vesicular trans 98.0 0.0044 1.5E-07 64.1 26.9 326 128-487 18-395 (651)
100 3tjz_B Coatomer subunit gamma; 98.0 5.2E-05 1.8E-09 73.6 11.8 246 5-291 70-318 (355)
101 1te4_A Conserved protein MTH18 97.9 3.1E-05 1E-09 64.3 7.3 104 343-483 26-130 (131)
102 3tt9_A Plakophilin-2; cell adh 97.5 0.00059 2E-08 62.1 11.1 178 367-562 8-208 (233)
103 3l9t_A Putative uncharacterize 97.3 0.0063 2.2E-07 54.2 14.9 147 91-258 70-217 (240)
104 1vsy_5 Proteasome activator BL 97.3 0.038 1.3E-06 61.7 24.7 414 107-552 481-942 (997)
105 3grl_A General vesicular trans 97.2 0.12 4.1E-06 53.6 24.1 318 89-439 18-394 (651)
106 3u0r_A Apoptosis inhibitor 5; 97.1 0.27 9.2E-06 48.7 24.2 238 6-270 32-322 (507)
107 3tt9_A Plakophilin-2; cell adh 97.0 0.011 3.6E-07 53.8 13.1 189 94-288 10-228 (233)
108 3l9t_A Putative uncharacterize 96.7 0.17 5.8E-06 45.1 18.0 169 1-205 35-207 (240)
109 1lrv_A LRV, leucine-rich repea 96.7 0.0003 1E-08 64.6 0.1 186 99-435 57-242 (244)
110 3fga_B Serine/threonine-protei 96.6 0.17 5.8E-06 49.3 18.9 228 5-255 131-373 (403)
111 2npp_B PP2A, B subunit, serine 96.6 0.23 7.9E-06 49.3 19.9 228 5-255 164-406 (449)
112 4gmo_A Putative uncharacterize 96.4 0.0083 2.8E-07 64.9 9.2 71 367-441 35-107 (684)
113 1vsy_4 Proteasome activator BL 96.3 0.56 1.9E-05 50.9 22.9 122 83-208 326-458 (799)
114 1vsy_4 Proteasome activator BL 95.9 2.4 8.3E-05 46.0 38.4 342 83-442 15-458 (799)
115 4atg_A TAF6; transcription, TF 95.8 0.21 7.2E-06 43.3 13.3 126 351-484 27-160 (196)
116 3gs3_A Symplekin, LD45768P; he 95.8 1.2 4E-05 40.8 20.8 142 2-161 14-174 (257)
117 3gs3_A Symplekin, LD45768P; he 95.4 1.5 5.3E-05 40.0 20.2 165 87-255 48-250 (257)
118 1lrv_A LRV, leucine-rich repea 95.1 0.0072 2.5E-07 55.3 2.0 164 97-392 79-242 (244)
119 3o2t_A Symplekin; heat repeat, 95.0 2.8 9.5E-05 40.8 22.5 142 3-162 25-185 (386)
120 3o2t_A Symplekin; heat repeat, 94.9 2.4 8.3E-05 41.2 19.0 163 89-256 60-264 (386)
121 2jak_A Serine/threonine-protei 93.6 1 3.5E-05 43.8 13.2 180 5-201 176-363 (392)
122 3u0r_A Apoptosis inhibitor 5; 92.7 8.6 0.00029 38.2 35.4 324 176-562 31-399 (507)
123 4atg_A TAF6; transcription, TF 92.2 5.1 0.00018 34.7 14.3 80 472-561 61-140 (196)
124 2npp_B PP2A, B subunit, serine 92.1 10 0.00035 37.6 23.0 116 218-360 283-401 (449)
125 1w9c_A CRM1 protein, exportin 90.8 11 0.00037 35.5 17.2 130 141-272 83-227 (321)
126 3fga_B Serine/threonine-protei 90.5 14 0.00047 36.1 22.5 118 218-362 250-370 (403)
127 1lsh_A Lipovitellin (LV-1N, LV 89.4 33 0.0011 38.9 22.6 130 95-245 394-540 (1056)
128 3dad_A FH1/FH2 domain-containi 89.1 15 0.00052 34.7 15.5 146 3-162 118-288 (339)
129 2jak_A Serine/threonine-protei 89.0 3.9 0.00013 39.7 11.8 217 378-634 140-364 (392)
130 1w9c_A CRM1 protein, exportin 88.8 4 0.00014 38.4 11.4 152 473-640 45-199 (321)
131 1lsh_A Lipovitellin (LV-1N, LV 87.2 4.5 0.00015 45.9 13.0 156 343-540 409-580 (1056)
132 1upk_A MO25 protein; transfera 83.8 29 0.001 32.7 23.5 187 95-289 81-283 (341)
133 1upk_A MO25 protein; transfera 83.1 32 0.0011 32.5 20.2 188 50-249 89-284 (341)
134 1juq_A ADP-ribosylation factor 82.0 12 0.0004 31.7 10.2 114 375-511 25-145 (171)
135 3ldz_A STAM-1, signal transduc 77.3 11 0.00036 30.8 8.1 75 367-443 42-118 (140)
136 3dad_A FH1/FH2 domain-containi 77.3 50 0.0017 31.2 15.3 148 135-289 122-286 (339)
137 3g2s_A C-terminal fragment of 77.3 13 0.00043 30.7 8.6 74 367-442 48-129 (149)
138 3ldz_A STAM-1, signal transduc 75.5 16 0.00055 29.7 8.7 77 173-251 41-117 (140)
139 3g2s_A C-terminal fragment of 73.8 23 0.00077 29.1 9.2 78 173-252 47-130 (149)
140 2fv2_A RCD1 required for cell 69.7 64 0.0022 29.1 18.6 96 106-204 116-223 (268)
141 1mhq_A ADP-ribosylation factor 69.1 23 0.0008 29.0 8.4 76 130-207 37-118 (148)
142 1x5b_A Signal transducing adap 68.8 29 0.00098 29.0 9.0 99 102-208 29-128 (163)
143 1mhq_A ADP-ribosylation factor 66.8 35 0.0012 28.0 8.9 78 173-252 37-120 (148)
144 1t06_A Hypothetical protein; s 65.2 21 0.00073 32.0 8.1 73 366-442 107-183 (235)
145 1x5b_A Signal transducing adap 63.8 64 0.0022 26.9 12.2 115 375-510 27-144 (163)
146 2b6c_A Hypothetical protein EF 62.7 24 0.00081 31.3 7.8 89 341-442 102-191 (220)
147 3zyq_A Hepatocyte growth facto 61.0 64 0.0022 28.6 10.3 116 375-510 20-137 (226)
148 1vdy_A Hypothetical protein (R 59.6 27 0.00093 28.2 6.7 76 363-439 45-130 (140)
149 1ho8_A Vacuolar ATP synthase s 59.3 16 0.00053 36.6 6.4 71 131-206 395-477 (480)
150 1dvp_A HRS, hepatocyte growth 57.9 94 0.0032 27.4 10.9 117 375-511 17-135 (220)
151 3zyq_A Hepatocyte growth facto 57.9 25 0.00085 31.3 7.0 76 130-207 44-120 (226)
152 3qml_C Protein SLS1, nucleotid 57.6 1.2E+02 0.0041 28.1 12.4 97 102-204 80-188 (315)
153 2fv2_A RCD1 required for cell 57.6 25 0.00086 31.7 6.8 104 145-250 116-226 (268)
154 1sz9_A PCF11 protein; RNA poly 57.4 76 0.0026 25.7 10.0 85 116-205 30-114 (144)
155 4flb_A Regulation of nuclear P 56.7 73 0.0025 25.3 11.7 67 406-489 5-72 (132)
156 4fu3_A Regulation of nuclear P 55.1 47 0.0016 26.5 7.8 62 411-489 9-71 (135)
157 3jxy_A Alkylpurine DNA glycosy 53.3 1.2E+02 0.0042 26.9 15.0 129 42-204 65-194 (232)
158 1vdy_A Hypothetical protein (R 52.3 91 0.0031 25.1 9.4 35 256-290 45-79 (140)
159 1juq_A ADP-ribosylation factor 52.2 1E+02 0.0036 25.8 11.9 78 173-252 49-132 (171)
160 1dvp_A HRS, hepatocyte growth 51.9 32 0.0011 30.4 6.8 75 130-207 41-117 (220)
161 3qml_C Protein SLS1, nucleotid 51.5 1.3E+02 0.0046 27.9 10.7 68 16-85 41-115 (315)
162 3ebb_A Phospholipase A2-activa 49.1 97 0.0033 29.0 9.8 117 409-537 147-264 (304)
163 1elk_A Target of MYB1; superhe 45.9 1.2E+02 0.0042 24.9 9.0 99 102-208 30-133 (157)
164 1elk_A Target of MYB1; superhe 45.1 1.3E+02 0.0044 24.8 9.3 78 173-251 52-133 (157)
165 3gae_A Protein DOA1; UFD3, CDC 42.3 85 0.0029 28.4 8.1 99 50-160 101-217 (253)
166 1ho8_A Vacuolar ATP synthase s 41.9 21 0.00073 35.6 4.2 74 39-123 397-478 (480)
167 3s4w_B Protein FACD2, fanconi 40.4 4.8E+02 0.016 30.0 25.1 116 404-541 395-512 (1323)
168 3d9j_A RNA-binding protein 16; 37.6 1.6E+02 0.0056 23.8 8.4 57 500-559 38-98 (145)
169 3rru_A TOM1L1 protein; structu 37.5 1.6E+02 0.0054 24.1 8.2 92 455-552 50-147 (152)
170 2b6c_A Hypothetical protein EF 36.2 2.2E+02 0.0075 24.9 14.9 129 41-204 58-187 (220)
171 1sz9_A PCF11 protein; RNA poly 33.8 1.9E+02 0.0064 23.4 9.0 77 364-442 40-117 (144)
172 3l3f_X Protein DOA1, DOA1/UFD3 32.9 76 0.0026 30.5 6.3 110 37-160 198-326 (362)
173 3pst_A Protein DOA1; protein d 31.9 1E+02 0.0036 30.2 7.2 98 50-160 273-389 (425)
174 3ebb_A Phospholipase A2-activa 31.4 3.2E+02 0.011 25.4 13.5 115 130-248 146-263 (304)
175 3gae_A Protein DOA1; UFD3, CDC 30.4 2.2E+02 0.0075 25.7 8.8 136 343-486 68-217 (253)
176 3jxy_A Alkylpurine DNA glycosy 29.9 59 0.002 29.0 4.9 88 342-442 109-198 (232)
177 3eg5_B Protein diaphanous homo 29.4 1.4E+02 0.0048 29.0 7.8 129 18-165 94-250 (383)
178 3ut4_A CTHE_2751, putative unc 28.9 2.2E+02 0.0075 22.7 10.1 104 83-203 22-128 (134)
179 3d9j_A RNA-binding protein 16; 28.1 1.9E+02 0.0065 23.4 7.2 90 108-203 21-117 (145)
180 4f52_E Glomulin; cullin-ring E 26.4 5.6E+02 0.019 26.5 12.9 151 129-287 315-477 (596)
181 3s4w_B Protein FACD2, fanconi 26.0 8.1E+02 0.028 28.3 18.1 98 100-203 408-505 (1323)
182 4flb_A Regulation of nuclear P 20.4 3.1E+02 0.011 21.4 9.6 97 94-202 10-109 (132)
No 1
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=1.7e-57 Score=516.93 Aligned_cols=630 Identities=34% Similarity=0.566 Sum_probs=536.5
Q ss_pred hHHHHHHHHh-cCCChHHHHHHHHHHHHHHhhCcchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhh
Q 006253 3 AEVTQILLNA-QSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQR 81 (653)
Q Consensus 3 ~~l~~ll~~~-~s~d~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~ 81 (653)
+++.++|+++ .|||++.|++|+++|++++++++|+|+..|++++.+++.++++|++|+++||+.++++|+...++....
T Consensus 4 ~~l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~ 83 (861)
T 2bpt_A 4 AEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQR 83 (861)
T ss_dssp HHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHcccCcCHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHHHh
Confidence 5899999999 999999999999999999887789999999999998667899999999999999999998887777788
Q ss_pred ccC-CChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCC-ChhHHHHHHHHHHHHH
Q 006253 82 WLS-LDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQL-PPHTKQATLETLGYIC 159 (653)
Q Consensus 82 ~~~-l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~~l~~l~~l~ 159 (653)
|.. ++++.+..||+.+++.+.++++.+|++++.+++.|+..++|.+.||++++.|.+.++++ ++..|+.++.+++.++
T Consensus 84 ~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~ 163 (861)
T 2bpt_A 84 WITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMC 163 (861)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHH
T ss_pred HhhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 997 99999999999999999999999999999999999999988558999999999999998 9999999999999999
Q ss_pred hhhcccc--cchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHH
Q 006253 160 EEVSSDA--VEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQ 237 (653)
Q Consensus 160 ~~~~~~~--~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~ 237 (653)
+.+.++. + ..+...+++.+.+.+.++++++++|..|++++..++.++..++.....++.+++.+...+.++++++|.
T Consensus 164 ~~~~~~~~~~-~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~ 242 (861)
T 2bpt_A 164 ESADPQSQAL-VSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQA 242 (861)
T ss_dssp HTSSTTSSTT-GGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHH
T ss_pred HcCChhhhHH-HHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHH
Confidence 9874442 4 567888999999999842238999999999999998877665544334567888888888889999999
Q ss_pred HHHHHHHHHHHHhHHhhHHhHH-HHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHh
Q 006253 238 AAFECLVAISSTYYEKLAPYIQ-DIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKH 316 (653)
Q Consensus 238 ~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (653)
.++++|..++..+++.+.+++. .+++.++..+.+.+++++..++++|..+++..........+. +.++..+.++..+
T Consensus 243 ~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 320 (861)
T 2bpt_A 243 AAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQF--PQSPLQSYNFALS 320 (861)
T ss_dssp HHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHC--TTCSCCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhc--cCCchhhHHHHHH
Confidence 9999999999999999999999 999999999999999999999999999988653221110000 0000012345677
Q ss_pred hhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhc
Q 006253 317 ALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILE 396 (653)
Q Consensus 317 ~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~ 396 (653)
++..++|.++..|.+.++|+ |+++|++|.+|..+|+.++..+|+.+++.+++.+.+.+.+++|+.|+++++++|.+++
T Consensus 321 ~~~~il~~ll~~l~~~~~d~--~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~ 398 (861)
T 2bpt_A 321 SIKDVVPNLLNLLTRQNEDP--EDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMD 398 (861)
T ss_dssp HHHHHHHHHHHHTTCCCCC---CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHhccccc--ccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHc
Confidence 78889999999888654432 3456999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccchhhHHHH
Q 006253 397 GPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEK 476 (653)
Q Consensus 397 ~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~ 476 (653)
++.++.+.++++.+++.++..+ +|+++.||.+++|++|+++..+... .....++..+++.++..+.++++||..
T Consensus 399 ~~~~~~~~~~l~~il~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~-----~~~~~~~~~~l~~l~~~l~~~~~v~~~ 472 (861)
T 2bpt_A 399 GPDKVQRTYYVHQALPSILNLM-NDQSLQVKETTAWCIGRIADSVAES-----IDPQQHLPGVVQACLIGLQDHPKVATN 472 (861)
T ss_dssp SSCHHHHHHHHHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHHHHGGG-----SCTTTTHHHHHHHHHHHHTSCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHHHHhhhh-----cCCHHHHHHHHHHHHHHhccChHHHHH
Confidence 8744667788999999999999 9999999999999999999988631 013678999999999999877899999
Q ss_pred HHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Q 006253 477 ACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMME 556 (653)
Q Consensus 477 a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~ 556 (653)
||+++..+++.+++ ..+..+.||++.+++.|++.+...+. +..+|..++++++.++...|..+.+|+..++|.+++.
T Consensus 473 a~~al~~l~~~~~~--~~~~~l~~~~~~il~~L~~~l~~~d~-~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~ 549 (861)
T 2bpt_A 473 CSWTIINLVEQLAE--ATPSPIYNFYPALVDGLIGAANRIDN-EFNARASAFSALTTMVEYATDTVAETSASISTFVMDK 549 (861)
T ss_dssp HHHHHHHHHHHHSS--SSSCGGGGGHHHHHHHHHHHHTCSCC-GGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccc--ccchhhHHHHHHHHHHHHHHHhCcCc-chHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHH
Confidence 99999999998642 11356889999999999999986543 3578999999999999999999999999999999999
Q ss_pred HHHHHH--hhcCChhHHHhHHHHHHHHHhHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccCc-chhhhHHHHHH
Q 006253 557 LHQTLE--AQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSA-TAHEEAMLAIG 633 (653)
Q Consensus 557 l~~~~~--~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~-~~~e~~~~~~~ 633 (653)
|...+. .+..++++++....++..++++++.++..+|.. +.||.+.+++.++..++..+. .+|+.++.+++
T Consensus 550 l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~------~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~ 623 (861)
T 2bpt_A 550 LGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSS------VEPVADMLMGLFFRLLEKKDSAFIEDDVFYAIS 623 (861)
T ss_dssp HHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGG------TGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHH
T ss_pred HHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhh------hHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHH
Confidence 887531 111233333334567888999999999999987 999999999999999998766 89999999999
Q ss_pred HHHHHhccCCccc-hhhhcC
Q 006253 634 ALAYATGLWRIRY-CLIVMG 652 (653)
Q Consensus 634 ~l~~~~~~~f~~y-~~i~~~ 652 (653)
.++..+|.+|.|| |.++|.
T Consensus 624 ~l~~~~~~~~~~~l~~i~~~ 643 (861)
T 2bpt_A 624 ALAASLGKGFEKYLETFSPY 643 (861)
T ss_dssp HHHHHHGGGGHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHH
Confidence 9999999999999 777764
No 2
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=4e-57 Score=510.35 Aligned_cols=588 Identities=20% Similarity=0.347 Sum_probs=497.8
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHhhCcchHHHHHHHHHhc-CCCChhHHHHHHHHHhhhcchhhhhhHHHhhhh
Q 006253 3 AEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVN-DEKPVESRKLAGLILKNALDAKEQHRKFELVQR 81 (653)
Q Consensus 3 ~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~-~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~ 81 (653)
+++.++|++++|||+++|++|+++|++++.+ |+|...|..++.+ .+.++.+|++|+++|||.+.+ .
T Consensus 13 ~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~--p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~-----------~ 79 (852)
T 4fdd_A 13 QQILQLLKESQSPDTTIQRTVQQKLEQLNQY--PDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKA-----------H 79 (852)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHTTS--HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTT-----------S
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHHHhC--CCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHH-----------c
Confidence 3789999999999999999999999999877 9999999999985 467899999999999999975 4
Q ss_pred ccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhh
Q 006253 82 WLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEE 161 (653)
Q Consensus 82 ~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~ 161 (653)
|..++++.+..||+.++++|.++++.+|+.++.+++.|++.+++ +.||++++.+.+.++++++..|++++.+|+.+++.
T Consensus 80 w~~~~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~-~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~ 158 (852)
T 4fdd_A 80 FQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGEL-QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICED 158 (852)
T ss_dssp GGGCCHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTT-TTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 67799999999999999999999999999999999999999977 69999999999999999999999999999999998
Q ss_pred hcccccch----hhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHH
Q 006253 162 VSSDAVEQ----DHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQ 237 (653)
Q Consensus 162 ~~~~~~~~----~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~ 237 (653)
. +..++. .....+++.+.++++ ++++++|..|++++..++...+.... ...+.+++.+...++++++++|.
T Consensus 159 ~-~~~~~~~~~~~~~~~il~~l~~~l~--~~~~~vR~~A~~aL~~~~~~~~~~~~--~~~~~~l~~l~~~~~d~~~~vr~ 233 (852)
T 4fdd_A 159 S-AEILDSDVLDRPLNIMIPKFLQFFK--HSSPKIRSHAVACVNQFIISRTQALM--LHIDSFIENLFALAGDEEPEVRK 233 (852)
T ss_dssp H-TTHHHHCSSSSCHHHHHHHHTTTTT--CSSHHHHHHHHHHHHTTTTTTCHHHH--TSHHHHHHHHHHHHTCCCHHHHH
T ss_pred h-HHHhchhhhcchHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHhcccHHHH--HHHHHHHHHHHHHcCCCCHHHHH
Confidence 8 544311 236789999999998 78999999999999876543222111 12256888888888899999999
Q ss_pred HHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhh
Q 006253 238 AAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHA 317 (653)
Q Consensus 238 ~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (653)
.++++|..+++.+++.+.+|++.+++.++..+++.++++|..|+++|.++++.. .+.++.+++
T Consensus 234 ~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~-----------------~~~~~~~~~ 296 (852)
T 4fdd_A 234 NVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQP-----------------ICKDVLVRH 296 (852)
T ss_dssp HHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTST-----------------THHHHHTTT
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcch-----------------hHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998631 134567788
Q ss_pred hhhhHHHHHHHhhhcc-----------CCccCCC--ccccHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhH
Q 006253 318 LPVLVPLLLETLLKQE-----------EDQDQDE--GAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQR 384 (653)
Q Consensus 318 l~~l~~~l~~~l~~~~-----------ed~~~d~--~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r 384 (653)
++.++|.++..|.+.+ +|+++|+ +.|++|++|..+|+.++...|+.+++.+++.+.+.+.+++|++|
T Consensus 297 ~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R 376 (852)
T 4fdd_A 297 LPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVK 376 (852)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHH
T ss_pred HHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHH
Confidence 8899999998884221 2222222 57999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHH
Q 006253 385 EAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLL 464 (653)
Q Consensus 385 ~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~ 464 (653)
++|++++|.+++++. ..+.++++.++|.++..+ +|+++.||.+|+|++|+++++.... ....++..+++.++
T Consensus 377 ~aa~~alg~i~~~~~-~~~~~~l~~~l~~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~~~~------~~~~~~~~ll~~L~ 448 (852)
T 4fdd_A 377 ESGILVLGAIAEGCM-QGMIPYLPELIPHLIQCL-SDKKALVRSITCWTLSRYAHWVVSQ------PPDTYLKPLMTELL 448 (852)
T ss_dssp HHHHHHHHHTTTTTH-HHHGGGHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHTHHHHHHS------CTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHhccc------hHHHHHHHHHHHHH
Confidence 999999999999974 567789999999999999 9999999999999999999987632 35789999999999
Q ss_pred Hhccc-hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhcccccc-------------------------
Q 006253 465 QSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDA------------------------- 518 (653)
Q Consensus 465 ~~l~d-~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~------------------------- 518 (653)
..+.| +++||..|++++..+++..++ .+.||++.+++.|+..+++.+.
T Consensus 449 ~~L~d~~~~vr~~a~~aL~~l~~~~~~------~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~ 522 (852)
T 4fdd_A 449 KRILDSNKRVQEAACSAFATLEEEACT------ELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPE 522 (852)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHHGG------GGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhH------hhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHH
Confidence 99987 799999999999999988753 4889999999998887764320
Q ss_pred ------------------chhchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHh-------h-cCChhHHH
Q 006253 519 ------------------GESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEA-------Q-KLSSDERE 572 (653)
Q Consensus 519 ------------------~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~-------~-~~~~~~~~ 572 (653)
++..++ .++++++.++...|..+.||+..+++.+++.+.+.+.. + ....+|+
T Consensus 523 ~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~- 600 (852)
T 4fdd_A 523 YIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDK- 600 (852)
T ss_dssp HHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCT-
T ss_pred HHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcc-
Confidence 012333 57888888888888889999999999888888765431 1 1111122
Q ss_pred hHHHHHHHHHhHHHHHHHHhCCCcchhhHhhHhH--HHHHHHHHHHHhccCcchhhhHHHHHHHHHHHhccCCccc-hhh
Q 006253 573 KQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYA--DQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGLWRIRY-CLI 649 (653)
Q Consensus 573 ~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~e~~~~~~~~l~~~~~~~f~~y-~~i 649 (653)
.++..+++.++.++.++|.. +.+|+ +.+++.+++.+.+++..+|+.++.+++.++..+|.+|.|| +.+
T Consensus 601 ---~~~~~~l~~l~~l~~~l~~~------~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~ 671 (852)
T 4fdd_A 601 ---DFMIVALDLLSGLAEGLGGN------IEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADF 671 (852)
T ss_dssp ---HHHHHHHHHHHHHHHHHGGG------GHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHH
T ss_pred ---hHHHHHHHHHHHHHHHHhHh------HHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 35667899999999999988 99998 7899999999988888999999999999999999999999 666
Q ss_pred hc
Q 006253 650 VM 651 (653)
Q Consensus 650 ~~ 651 (653)
+|
T Consensus 672 lp 673 (852)
T 4fdd_A 672 MP 673 (852)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 3
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=4.4e-55 Score=497.94 Aligned_cols=634 Identities=39% Similarity=0.640 Sum_probs=529.2
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHhhCcchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhc
Q 006253 3 AEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRW 82 (653)
Q Consensus 3 ~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~ 82 (653)
|++.++|+++.+||+++|++|+++|+++.++++++|+..|++++.+++.++.+|++|+++||+.+..+|..++......|
T Consensus 1 ~~l~~~L~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w 80 (876)
T 1qgr_A 1 MELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRW 80 (876)
T ss_dssp CCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhh
Confidence 57999999999999999999999999998877799999999999986568999999999999999888776666666789
Q ss_pred cCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCC--ChhHHHHHHHHHHHHHh
Q 006253 83 LSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQL--PPHTKQATLETLGYICE 160 (653)
Q Consensus 83 ~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~--~~~~~~~~l~~l~~l~~ 160 (653)
..++++.+..||+.+++.+.++++.+ +.++.+++.++..++|...||++++.+.+.+.++ ++.+|..++.+++.+++
T Consensus 81 ~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~ 159 (876)
T 1qgr_A 81 LAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQ 159 (876)
T ss_dssp HTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988888 9999999999999887669999999999999998 99999999999999998
Q ss_pred hhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHH
Q 006253 161 EVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAF 240 (653)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~ 240 (653)
.+.++.+ ..+...+++.+.+.+.+++++..+|..|++++..++.++..++.....++.+++.+...+.++++++|..++
T Consensus 160 ~~~~~~~-~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~ 238 (876)
T 1qgr_A 160 DIDPEQL-QDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAAL 238 (876)
T ss_dssp HSCHHHH-GGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred hcCHhhH-HhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 7645555 577889999999999853347999999999999998876655544333456888888888888999999999
Q ss_pred HHHHHHHHHhHHhhHHhHH-HHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCC-CCCCCCC-CchhhHHHhh
Q 006253 241 ECLVAISSTYYEKLAPYIQ-DIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGG-DFSGDSD-IPCFYFIKHA 317 (653)
Q Consensus 241 ~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~ 317 (653)
++|..++..+++.+.+++. .+++.++..+.+.+++++..++++|..+++...++..+..+ ..++... .+...+.++.
T Consensus 239 ~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (876)
T 1qgr_A 239 QNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGA 318 (876)
T ss_dssp HHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHH
Confidence 9999999999999999999 99999999999999999999999999998764322110000 0000000 1233566677
Q ss_pred hhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcC
Q 006253 318 LPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEG 397 (653)
Q Consensus 318 l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~ 397 (653)
+..++|.+++.|...++|+ |+++|++|.+|..+++.++..+|+.+++.+++.+.+.+.+++|++|++++++++.++++
T Consensus 319 ~~~ll~~ll~~l~~~~~d~--~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~ 396 (876)
T 1qgr_A 319 LQYLVPILTQTLTKQDEND--DDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEG 396 (876)
T ss_dssp HHHHHHHHHHHTTCCCSSC--CTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSS
T ss_pred HHHHhHHHHHHhhcccccc--cccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcC
Confidence 7889999999887655433 34569999999999999999999889999999999999999999999999999999998
Q ss_pred CCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccchhhHHHHH
Q 006253 398 PSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKA 477 (653)
Q Consensus 398 ~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a 477 (653)
+.++.+.++++.++|.++..+ +|+++.||.+|+++++++++.+... ....+++..+++.++..+.++++|+..|
T Consensus 397 ~~~~~~~~~~~~~l~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~-----~~~~~~l~~~l~~l~~~l~~~~~v~~~a 470 (876)
T 1qgr_A 397 PEPSQLKPLVIQAMPTLIELM-KDPSVVVRDTAAWTVGRICELLPEA-----AINDVYLAPLLQCLIEGLSAEPRVASNV 470 (876)
T ss_dssp SCHHHHHHHHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHCGGG-----TSSTTTHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHhCchh-----cccHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 743556788999999999999 9999999999999999999987631 1146899999999999998778999999
Q ss_pred HHHHHHHHhcccCC--------CCCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhcccccHHHHHHH
Q 006253 478 CGALYFLAQGFEDA--------ISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQL 549 (653)
Q Consensus 478 ~~al~~~~~~~~~~--------~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l 549 (653)
++++..+++.+++. ......+.||++.+++.|++.+...+.++..+|..++++++.++...|.++.+++..+
T Consensus 471 ~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l 550 (876)
T 1qgr_A 471 CWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKT 550 (876)
T ss_dssp HHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHH
Confidence 99999999876410 0013468899999999999999865432357888999999999999999999999999
Q ss_pred HHHHHHHHHHHHH--hhcCChhHHHhHHHHHHHHHhHHHHHHHHhC-CCcchhhHhhHhHHHHHHHHHHHHhccC--cch
Q 006253 550 VPLIMMELHQTLE--AQKLSSDEREKQNEIQGLLCGCLQVIIQKLG-SSEQTKYVFMQYADQMMGLFLRVFAIRS--ATA 624 (653)
Q Consensus 550 ~~~l~~~l~~~~~--~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~-~~~~~~~~~~~~~~~i~~~l~~~l~~~~--~~~ 624 (653)
+|.+++.|...++ .+..+++|++.+..++..++.+++.++..+| .. +.||++.+++.+++.++..+ ..+
T Consensus 551 ~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~------~~~~~~~l~~~l~~~l~~~~~~~~v 624 (876)
T 1qgr_A 551 TLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQD------ALQISDVVMASLLRMFQSTAGSGGV 624 (876)
T ss_dssp HHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHH------HHTTHHHHHHHHHHHC-----CCHH
T ss_pred HHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhh------hhHHHHHHHHHHHHHHHhccCCCCc
Confidence 9999999987532 1222345655556788889999999999999 77 99999999999999998764 368
Q ss_pred hhhHHHHHHHHHHHhccCCccc-hhhhcC
Q 006253 625 HEEAMLAIGALAYATGLWRIRY-CLIVMG 652 (653)
Q Consensus 625 ~e~~~~~~~~l~~~~~~~f~~y-~~i~~~ 652 (653)
++.++.+++.++..+|..|.|| +.++|.
T Consensus 625 ~~~a~~~l~~l~~~~~~~~~~~~~~~~~~ 653 (876)
T 1qgr_A 625 QEDALMAVSTLVEVLGGEFLKYMEAFKPF 653 (876)
T ss_dssp HHHHHHHHHHHHHHHGGGGGGGHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999999999999999999 665553
No 4
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=100.00 E-value=2.5e-46 Score=425.87 Aligned_cols=593 Identities=14% Similarity=0.155 Sum_probs=441.5
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHhhCcchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhc
Q 006253 3 AEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRW 82 (653)
Q Consensus 3 ~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~ 82 (653)
+++.++|.+++|||++.| |+++|++++++ |+|+..|++++.+++.+.++|++|+++|||.+.++|.... ..
T Consensus 5 ~~l~~~L~~~~spd~~~r--Ae~~L~~~~~~--p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~-----~~ 75 (960)
T 1wa5_C 5 ETVAKFLAESVIASTAKT--SERNLRQLETQ--DGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDEN-----GN 75 (960)
T ss_dssp HHHHHHHHHTTSGGGHHH--HHHHHHHHHTS--TTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSS-----SC
T ss_pred HHHHHHHHHhcCCCHHHH--HHHHHHHhhcC--CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcc-----cC
Confidence 378999999999999988 99999999877 9999999999988777899999999999999998775321 11
Q ss_pred cCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhh
Q 006253 83 LSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEV 162 (653)
Q Consensus 83 ~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~ 162 (653)
..++++.|..||+.+++.+.++++.+|++++.+++.|+++++| +.||++++.|.+.++++++..+.+++.++..+++.+
T Consensus 76 ~~l~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p-~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~ 154 (960)
T 1wa5_C 76 HLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFP-DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRW 154 (960)
T ss_dssp BSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGG
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCc-cchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 3699999999999999999888899999999999999999999 699999999999999999999999999999999976
Q ss_pred cccccc-----------hhhHhHHHHHH---HhcccCCCCC-H------HHHHHHHHHHHHHHHh-hhhhcCChhHHHHH
Q 006253 163 SSDAVE-----------QDHVNKILTAV---VQGMNASESN-N------DVRLAATRALYNALGF-AQANFSNDMERDYI 220 (653)
Q Consensus 163 ~~~~~~-----------~~~~~~l~~~l---~~~l~~~~~~-~------~vr~~a~~~l~~~~~~-~~~~~~~~~~~~~i 220 (653)
....-. ......+++.+ .+.+.++..+ . +++..+++++..+..+ .+..+. .....+
T Consensus 155 ~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~--~~~~~~ 232 (960)
T 1wa5_C 155 RPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFE--DNIQVG 232 (960)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHH--HTHHHH
T ss_pred HHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHH--HHHHHH
Confidence 321000 11222222222 2335532122 1 2333455555543311 011110 111334
Q ss_pred HHHHHhhhcC------C---------cHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhh-----cCChhHHHHH
Q 006253 221 MRVVCEATLS------P---------EVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVR-----EDEEPVALQA 280 (653)
Q Consensus 221 l~~l~~~~~~------~---------~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~-----~~~~~~~~~a 280 (653)
++.+...+.. . .+.+++.+++++..+++.+++.+.+|++.+++.+++.+. ..++.++..+
T Consensus 233 ~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a 312 (960)
T 1wa5_C 233 MGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKS 312 (960)
T ss_dssp HHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHH
T ss_pred HHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHH
Confidence 4544443321 0 135788999999999999999999999999999998875 3567899999
Q ss_pred HHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHH--hhhhhhH-HHHHHHhhhccCCcc--------------CCCccc
Q 006253 281 IEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIK--HALPVLV-PLLLETLLKQEEDQD--------------QDEGAW 343 (653)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~l~-~~l~~~l~~~~ed~~--------------~d~~~~ 343 (653)
++||.++++... .....+ +++..++ +.++..|...++|.+ |+++.|
T Consensus 313 l~fl~~~~~~~~-----------------~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~ 375 (960)
T 1wa5_C 313 LSFLTAVTRIPK-----------------YFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTD 375 (960)
T ss_dssp HHHHHHHHTSHH-----------------HHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----
T ss_pred HHHHHHHhCcHh-----------------HHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCccccc
Confidence 999999886432 112222 5666777 577777654332210 134557
Q ss_pred cHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhc------CcchhhHHHHHHHHHHhhcCCC-CC-cchH-----HHHH-
Q 006253 344 NIAMAGGTCLGLVARTVGDDIVPLVMPFVEENIT------KQEWRQREAATYAFGSILEGPS-PE-KLVP-----LVNI- 409 (653)
Q Consensus 344 ~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~------~~~~~~r~aal~~l~~i~~~~~-~~-~~~~-----~l~~- 409 (653)
++|.+|..+|+.++..+++.+++.+++++.+.+. +++|+.|+||++++|+++++.. .. .... .+..
T Consensus 376 s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~ 455 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDF 455 (960)
T ss_dssp CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHH
T ss_pred CcHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHH
Confidence 9999999999999999998899999999988876 6789999999999999986421 11 1110 1222
Q ss_pred HHHHHHHHhcCCC---chHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc-hhhHHHHHHHHHHHHH
Q 006253 410 ALNFMLTALMQDP---NNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLA 485 (653)
Q Consensus 410 l~~~ll~~l~~d~---~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~ 485 (653)
+...++..+ +|+ +|.||.+|+|++|+|++++. .+++..+++.+++.+.| +++|+.+||.|+.+++
T Consensus 456 l~~~v~p~l-~~~~~~~p~vr~~a~~~lg~~~~~~~----------~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~ 524 (960)
T 1wa5_C 456 FTKEIAPDL-TSNNIPHIILRVDAIKYIYTFRNQLT----------KAQLIELMPILATFLQTDEYVVYTYAAITIEKIL 524 (960)
T ss_dssp HHHHTHHHH-HCSSCSCHHHHHHHHHHHHHTGGGSC----------HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHhHHHh-cCCCCCCceehHHHHHHHHHHHhhCC----------HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Confidence 233455566 666 99999999999999999863 46899999999999987 6899999999999999
Q ss_pred hccc-----CCCCCCCCCchhHHHHHHHHHHhcccccc--chhchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Q 006253 486 QGFE-----DAISPSSPLTPFFQEIVQALLTVTHREDA--GESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELH 558 (653)
Q Consensus 486 ~~~~-----~~~~~~~~l~~~l~~i~~~L~~~l~~~~~--~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~ 558 (653)
+... +....+..+.||++.+++.|+.+++.... ........++++++.++...++.+.||+..+++.+...+.
T Consensus 525 ~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~ 604 (960)
T 1wa5_C 525 TIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVT 604 (960)
T ss_dssp TCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHH
T ss_pred hcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 8532 00012466899999999999999986410 0111235799999999999999999999999999999988
Q ss_pred HHHHhhcCChhHHHhHHHHHHHHHhHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHH
Q 006253 559 QTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYA 638 (653)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~e~~~~~~~~l~~~ 638 (653)
...+ +++++ .++..++++++.++.+.++.. +.++.+.+++.+...|..+..+..++++..++.+...
T Consensus 605 ~~~~----~~~~~----~~~~~~~e~l~~l~~~~~~~~-----~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~ 671 (960)
T 1wa5_C 605 IMAK----NPSNP----RFTHYTFESIGAILNYTQRQN-----LPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQ 671 (960)
T ss_dssp HHTT----SCCCH----HHHHHHHHHHHHHHHTSCGGG-----HHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHH
T ss_pred HHHh----CCCCc----HHHHHHHHHHHHHHhcCCcch-----HHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHh
Confidence 7532 22343 345568999999999866543 8889999999999999987777889999999999988
Q ss_pred hccCCccc-hhh
Q 006253 639 TGLWRIRY-CLI 649 (653)
Q Consensus 639 ~~~~f~~y-~~i 649 (653)
. ..|.|| +.+
T Consensus 672 ~-~~~~~~~~~~ 682 (960)
T 1wa5_C 672 S-ATIPESIKPL 682 (960)
T ss_dssp C-SSCCTTTGGG
T ss_pred c-cCCCHHHHHH
Confidence 7 778777 443
No 5
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=100.00 E-value=1.2e-46 Score=396.14 Aligned_cols=456 Identities=42% Similarity=0.717 Sum_probs=386.4
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHhhCcchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhc
Q 006253 3 AEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRW 82 (653)
Q Consensus 3 ~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~ 82 (653)
|+|.++|.++++||+++|++|+++|+++++++.|+|+..|++++.+++.++.+|++|+++||+.++++|....++....|
T Consensus 1 ~~l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~ 80 (462)
T 1ibr_B 1 MELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRW 80 (462)
T ss_dssp -CHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhh
Confidence 57999999999999999999999999998755699999999999986678999999999999999999988776666789
Q ss_pred cCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCC--ChhHHHHHHHHHHHHHh
Q 006253 83 LSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQL--PPHTKQATLETLGYICE 160 (653)
Q Consensus 83 ~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~--~~~~~~~~l~~l~~l~~ 160 (653)
..++++.+..||+.+++.+.++++.+ ++++.+++.|+..++|...||++++.|.+.++++ ++.+|++++.+|+.+++
T Consensus 81 ~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~ 159 (462)
T 1ibr_B 81 LAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQ 159 (462)
T ss_dssp HTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998888 9999999999999988568999999999999998 99999999999999999
Q ss_pred hhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHH
Q 006253 161 EVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAF 240 (653)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~ 240 (653)
.+.++.+ ..+...+++.+.+.+.+.++++.+|..|++++..++.++.+........+.+++.+.....++++++|..++
T Consensus 160 ~~~~~~~-~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~ 238 (462)
T 1ibr_B 160 DIDPEQL-QDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAAL 238 (462)
T ss_dssp HSCGGGT-GGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred hCCchhh-HhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 8755555 677888999999999842228999999999999988776655443333455788888888888999999999
Q ss_pred HHHHHHHHHhHHhhHHhHH-HHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCC-CCCCCC-CchhhHHHhh
Q 006253 241 ECLVAISSTYYEKLAPYIQ-DIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGD-FSGDSD-IPCFYFIKHA 317 (653)
Q Consensus 241 ~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~ 317 (653)
++|..++..+++.+.+|++ .+++.++..+++.+++++..++++|..+++...+........ ..+.+. .....+++++
T Consensus 239 ~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (462)
T 1ibr_B 239 QNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGA 318 (462)
T ss_dssp HHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHH
Confidence 9999999999998999999 999999999999999999999999999998653322111110 011111 1244567778
Q ss_pred hhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcC
Q 006253 318 LPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEG 397 (653)
Q Consensus 318 l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~ 397 (653)
++.++|.+++.|...++| +++++|++|.+|..+|+.++..+|+.+++.+++.+.+.+.+++|++|++++.++|.++++
T Consensus 319 ~~~l~p~l~~~l~~~d~d--~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~ 396 (462)
T 1ibr_B 319 LQYLVPILTQTLTKQDEN--DDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEG 396 (462)
T ss_dssp HHHHHHHHHHHTTCCCSS--CCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSS
T ss_pred hhhccHHHHHHHHhcccc--cccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence 889999999988754443 334579999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhcc
Q 006253 398 PSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMK 468 (653)
Q Consensus 398 ~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~ 468 (653)
+..+.+.++++.++|.++..+ +|+++.||.+|+|+++++++.+... ....++++++++.++..++
T Consensus 397 ~~~~~~~~~l~~~~~~l~~~l-~d~~~~Vr~~a~~~l~~~~~~~~~~-----~~~~~~l~~ll~~Ll~~L~ 461 (462)
T 1ibr_B 397 PEPSQLKPLVIQAMPTLIELM-KDPSVVVRDTAAWTVGRICELLPEA-----AINDVYLAPLLQCLIEGLS 461 (462)
T ss_dssp SCTTTTCTTTTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHHHHGGGG-----CCSTTTHHHHHHHHHCC--
T ss_pred CcHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHhcccc-----cccHHHHHHHHHHHHHHhc
Confidence 754566778889999999999 9999999999999999999998642 1135899999999987664
No 6
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=100.00 E-value=1.4e-43 Score=405.45 Aligned_cols=601 Identities=13% Similarity=0.154 Sum_probs=434.2
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHhhCcchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhcc
Q 006253 4 EVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWL 83 (653)
Q Consensus 4 ~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~ 83 (653)
++.++++.+.+||++.|++|+++|++++++ |+++..+.+++.+ +.++++|++|+++|++.+++ .|.
T Consensus 8 ~l~~~l~~~~~~d~~~r~~A~~~L~~~~~~--p~~w~~~~~lL~~-~~~~~vr~~aa~~L~~~i~~-----------~w~ 73 (971)
T 2x1g_F 8 RLEEAVVSFYRSNSQNQAITHEWLTDAEAS--PQAWQFSWQLMQL-GKSQEVQFFGAITLHSKLMK-----------HWH 73 (971)
T ss_dssp ---CTHHHHHTSTTTC----CHHHHHTTTS--THHHHHHHHHTCT-TSCHHHHHHHHHHHHHHHHH-----------CGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--HHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHc-----------cHh
Confidence 577888889999999999999999999988 9999999999976 57899999999999999974 577
Q ss_pred CCChHHHHHHHHHHHHhcCC---CChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCC------ChhHHHHHHHH
Q 006253 84 SLDSSVKAQIKSFILKTLSS---PAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQL------PPHTKQATLET 154 (653)
Q Consensus 84 ~l~~~~~~~i~~~ll~~l~~---~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~------~~~~~~~~l~~ 154 (653)
.++++.+..+|+.+++.+.+ .++.||++++.+++.|+.+++| .||++++.+.+.++++ ++..++.++.+
T Consensus 74 ~l~~~~~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p--~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~i 151 (971)
T 2x1g_F 74 EVPPENREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG--EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEV 151 (971)
T ss_dssp GCCGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC--C------HHHHHHHHTC----CHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc--cccHHHHHHHHHHhccccccCCCHHHHHHHHHH
Confidence 89999999999999998865 2579999999999999999998 8999999999999875 56788999999
Q ss_pred HHHHHhhhc-c----------cccchhhHhHHHHHHHhcccCCCC------CHHHHHHHHHHHHHHHHh--hhhh-----
Q 006253 155 LGYICEEVS-S----------DAVEQDHVNKILTAVVQGMNASES------NNDVRLAATRALYNALGF--AQAN----- 210 (653)
Q Consensus 155 l~~l~~~~~-~----------~~~~~~~~~~l~~~l~~~l~~~~~------~~~vr~~a~~~l~~~~~~--~~~~----- 210 (653)
|..++++.. . +.+ ..++..+++.+.+.+...+. ...++..+++|+..++.+ ++..
T Consensus 152 L~~l~EEi~~~~~~~~r~~~~~~l-~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~~~~~l 230 (971)
T 2x1g_F 152 LTAIPEEAQVIHTSVKRVVLRAEI-AKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTI 230 (971)
T ss_dssp HHHHHHHHHHCCCSSCHHHHHHHH-HTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHH
T ss_pred HHHhHHHHhccCcHHHHHHHHHHH-HHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCccccccH
Confidence 999997531 1 112 23456666666666642111 127899999999887762 2110
Q ss_pred ----c--------------------CChh-----------------------HHHHHHHHHHh-------hhcCCc---H
Q 006253 211 ----F--------------------SNDM-----------------------ERDYIMRVVCE-------ATLSPE---V 233 (653)
Q Consensus 211 ----~--------------------~~~~-----------------------~~~~il~~l~~-------~~~~~~---~ 233 (653)
+ ..+. ....+++.+.. ...+.| .
T Consensus 231 l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~ 310 (971)
T 2x1g_F 231 TAVLLEVVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNE 310 (971)
T ss_dssp HHHHHHHHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCS
T ss_pred HHHHHhhhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccch
Confidence 0 0000 00112222221 113334 3
Q ss_pred HHHHHHHHHHHHHHHHhHHhhH-----------HhHHHHHHHHHHHhhc-----CChhHHHHHHHhHHHhhHHHHhhhhh
Q 006253 234 KIRQAAFECLVAISSTYYEKLA-----------PYIQDIFNITAKAVRE-----DEEPVALQAIEFWSSVCDEEIDILEE 297 (653)
Q Consensus 234 ~~~~~~~~~l~~l~~~~~~~~~-----------~~l~~l~~~~~~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~ 297 (653)
+.....++.+..+++.+.+.+. +++..+++.++....+ .+++++..+++||..+++...+...+
T Consensus 311 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~ 390 (971)
T 2x1g_F 311 DIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSND 390 (971)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccc
Confidence 6777888888888877665544 4566778888876643 57889999999999998743221100
Q ss_pred cCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCC-C----cc-ccHhhhHHHHHHHHHhhcCCCchhchHHH
Q 006253 298 YGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQD-E----GA-WNIAMAGGTCLGLVARTVGDDIVPLVMPF 371 (653)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d-~----~~-~~~r~~a~~~L~~l~~~~~~~~~~~l~~~ 371 (653)
.+ ........++++..+++.++..+.+.++++.++ + ++ .+.|+++.+++..++...|+.+++.+++.
T Consensus 391 ------~~-~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~~~~ 463 (971)
T 2x1g_F 391 ------EQ-KHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEILAAM 463 (971)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred ------cc-hHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 00 002345678889999999999886543321110 1 12 26889999999999999998999999999
Q ss_pred HHhhhcC-----cchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHhhhccC
Q 006253 372 VEENITK-----QEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQ--DPNNHVKDTTAWTLGRMFEFLHGS 444 (653)
Q Consensus 372 l~~~l~~-----~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~--d~~~~vr~~a~~~l~~~~~~~~~~ 444 (653)
+.+.+.+ ++|+.|++++++++++++++. ....++++.+++ ++..+ . |+++.||.+++|++|+|++++..
T Consensus 464 l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~-~~~~~~l~~l~~-~l~~l-~~~d~~~~vr~~a~~~l~~~~~~l~~- 539 (971)
T 2x1g_F 464 LDEAIADLQRHPTHWTKLEACIYSFQSVAEHFG-GEEKRQIPRLMR-VLAEI-PYEKLNVKLLGTALETMGSYCNWLME- 539 (971)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-------CHHHHHHH-HHHHS-CTTTSCHHHHHHHHHHHHHTHHHHC--
T ss_pred HHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHH-HHHhc-CccccCHHHHHHHHHHHHHHHHHHhc-
Confidence 9888765 689999999999999999984 444567888888 55666 5 57999999999999999999863
Q ss_pred CCCccccCccchHHHHHHHHHhccchhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccchhchH
Q 006253 445 TLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLR 524 (653)
Q Consensus 445 ~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~ 524 (653)
..+++..+++.++..+ + ++|+.+||.++..+++.++ ..+.||++.+++.+..+++.... +...+
T Consensus 540 -------~~~~l~~vl~~l~~~l-~-~~v~~~A~~al~~l~~~~~------~~l~p~~~~ll~~l~~~l~~~~~-~~~~~ 603 (971)
T 2x1g_F 540 -------NPAYIPPAINLLVRGL-N-SSMSAQATLGLKELCRDCQ------LQLKPYADPLLNACHASLNTGRM-KNSDS 603 (971)
T ss_dssp ----------CHHHHHHHHHHHH-H-SSCHHHHHHHHHHHHHHCH------HHHHHHHHHHHHHHHHHHHSTTS-CHHHH
T ss_pred -------CHHHHHHHHHHHHHHh-C-hHHHHHHHHHHHHHHHHHH------HhccccHHHHHHHHHHHHcCCCC-ChHHH
Confidence 3589999999999998 4 8999999999999998864 45889999999999999987433 35678
Q ss_pred HHHHHHHHHHHHhcc-cccHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHhHHHHHHHHhCCCcc--h---
Q 006253 525 TAAYETLNEVVRCST-DETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQ--T--- 598 (653)
Q Consensus 525 ~~~~~~l~~l~~~~~-~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~--~--- 598 (653)
..++++++.++...+ +++.||+..++++++..|.+..++...+++++. .+. ..+++++.++.+++.... .
T Consensus 604 ~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~---~~~-~~l~~L~~~~~~l~~~~~~~~~~~ 679 (971)
T 2x1g_F 604 VRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARI---RTI-FRLNMISTLFSSLNTDVDEQATDQ 679 (971)
T ss_dssp HHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHH---HHH-HHHHHHHHHHHHHTC---------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHH---HHH-HHHHHHHHHHhhcCCCcCcccccc
Confidence 899999999999876 568899999999999999987653211222221 122 367778888887764200 0
Q ss_pred --hhHhhHhHHHHHHHHHHHHhcc--CcchhhhHHHHHHHHHHHhccCCccc-hhhhcC
Q 006253 599 --KYVFMQYADQMMGLFLRVFAIR--SATAHEEAMLAIGALAYATGLWRIRY-CLIVMG 652 (653)
Q Consensus 599 --~~~~~~~~~~i~~~l~~~l~~~--~~~~~e~~~~~~~~l~~~~~~~f~~y-~~i~~~ 652 (653)
...+.+|.+.+++.+.+.++.. +..+.+.++.++++++.++|.+|.|| |.+++.
T Consensus 680 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~ 738 (971)
T 2x1g_F 680 PIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLF 738 (971)
T ss_dssp ----CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHH
T ss_pred cCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHH
Confidence 1237889999999999888753 55789999999999999999999999 766653
No 7
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=100.00 E-value=2.3e-42 Score=395.88 Aligned_cols=599 Identities=14% Similarity=0.149 Sum_probs=453.9
Q ss_pred HHHHHHHH-hcCCChHHHHHHHHHHHHHHhhCcchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhc
Q 006253 4 EVTQILLN-AQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRW 82 (653)
Q Consensus 4 ~l~~ll~~-~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~ 82 (653)
++.++++. ..++|++.|++|+++|++++++ |+++..+..++.+ +.++++|++|+++|++.+++ .|
T Consensus 25 ~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~--p~~~~~~~~lL~~-~~~~~vr~~aa~~L~~~i~~-----------~w 90 (963)
T 2x19_B 25 NVEKALHQLYYDPNIENKNLAQKWLMQAQVS--PQAWHFSWQLLQP-DKVPEIQYFGASALHIKISR-----------YW 90 (963)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHS--TTHHHHHHHHTST-TSCHHHHHHHHHHHHHHHHH-----------CG
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--HHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHh-----------CH
Confidence 57888888 5568999999999999999998 9999999999876 67899999999999999975 56
Q ss_pred cCCChHHHHHHHHHHHHhcCC---CChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcC-----CChhHHHHHHHH
Q 006253 83 LSLDSSVKAQIKSFILKTLSS---PAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQ-----LPPHTKQATLET 154 (653)
Q Consensus 83 ~~l~~~~~~~i~~~ll~~l~~---~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~-----~~~~~~~~~l~~ 154 (653)
..++++.+..+|+.+++.+.+ .++.||++++.+++.|+++++| ..||++++.+.+.+++ +++..+..++.+
T Consensus 91 ~~l~~~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p-~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~i 169 (963)
T 2x19_B 91 SDIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMP-DAWPCAVADMVRLFQAEDSPVDGQGRCLALLEL 169 (963)
T ss_dssp GGSCGGGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTT-TTSTTHHHHHHHHHCC------CHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCc-cccchHHHHHHHHHhhhccCCCcHHHHHHHHHH
Confidence 789999999999999999865 3589999999999999999999 5899999999999976 366788999999
Q ss_pred HHHHHhhhc-c-----------cccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhc-----------
Q 006253 155 LGYICEEVS-S-----------DAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANF----------- 211 (653)
Q Consensus 155 l~~l~~~~~-~-----------~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~----------- 211 (653)
|..++++.. . +.+ ..++..+++.+.+.+.+.+.+..++..+++|+..++. +....
T Consensus 170 L~~l~ee~~~~~~~~~~r~~~~~~l-~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~l~ 247 (963)
T 2x19_B 170 LTVLPEEFQTSRLPQYRKGLVRTSL-AVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQAAF 247 (963)
T ss_dssp HHHHHHHHTTCCC---------CCS-GGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHHHH
T ss_pred HHhCHHHHhcccCcHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcccchHHHHHHH
Confidence 999997541 1 122 3456777777777776432333577778888765442 10000
Q ss_pred ---CC-----------------------hhHHHHHHHHHHh-------hhcCCcHHHHHHHHHHHHHHHHHhHHhhH---
Q 006253 212 ---SN-----------------------DMERDYIMRVVCE-------ATLSPEVKIRQAAFECLVAISSTYYEKLA--- 255 (653)
Q Consensus 212 ---~~-----------------------~~~~~~il~~l~~-------~~~~~~~~~~~~~~~~l~~l~~~~~~~~~--- 255 (653)
.. ......+++.+.. .....+.+.....++.+..+++.++..+.
T Consensus 248 ~~l~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~ 327 (963)
T 2x19_B 248 AALQDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQV 327 (963)
T ss_dssp HHTTSTTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred HHhCCchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCc
Confidence 00 0011112222221 11234556667788888888877766554
Q ss_pred ---HhHHHHHHHHHHHhhc-----CChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHH
Q 006253 256 ---PYIQDIFNITAKAVRE-----DEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLE 327 (653)
Q Consensus 256 ---~~l~~l~~~~~~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 327 (653)
+++..+++.++....+ .++++...+++||..+++....+.++. .-......++++.++++.++.
T Consensus 328 ~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~--------~~~~~~~~~~~l~~l~~~ll~ 399 (963)
T 2x19_B 328 EHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEK--------QAVYQQVYRPVYFQLVDVLLH 399 (963)
T ss_dssp GGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHH--------HHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhh--------hHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888877664 467889999999999998432110000 001335667888899999999
Q ss_pred HhhhccCCc-----cCCCccc-cHhhhHHHHHHHHHhhcCCCchhchHHHHHhhh----cCcchhhHHHHHHHHHHhhcC
Q 006253 328 TLLKQEEDQ-----DQDEGAW-NIAMAGGTCLGLVARTVGDDIVPLVMPFVEENI----TKQEWRQREAATYAFGSILEG 397 (653)
Q Consensus 328 ~l~~~~ed~-----~~d~~~~-~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l----~~~~~~~r~aal~~l~~i~~~ 397 (653)
.|.+.++++ +||++.| ..|+++.++|..++...|+.+++.+++.+.+.+ .+.+|+.|+++++++|+++++
T Consensus 400 ~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~ 479 (963)
T 2x19_B 400 KAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAET 479 (963)
T ss_dssp HHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTS
T ss_pred HHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhh
Confidence 887543321 1111234 568899999999999999889999999998888 678899999999999999999
Q ss_pred CCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccchhhHHHHH
Q 006253 398 PSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKA 477 (653)
Q Consensus 398 ~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a 477 (653)
+. ....++++.+++.+. .+ .++++.||.+++|++|++++++.. ..+++..+++.++..+++ ++|+..|
T Consensus 480 ~~-~~~~~~l~~l~~~l~-~l-~~~~~~vr~~~~~~l~~~~~~l~~--------~~~~l~~vl~~l~~~l~~-~~V~~~A 547 (963)
T 2x19_B 480 ID-VNYSDVVPGLIGLIP-RI-SISNVQLADTVMFTIGALSEWLAD--------HPVMINSVLPLVLHALGN-PELSVSS 547 (963)
T ss_dssp CC-SSCCSHHHHHHHHGG-GS-CCCSHHHHHHHHHHHHHTHHHHHH--------CHHHHTTTHHHHHHHTTC-GGGHHHH
T ss_pred cC-chhhHHHHHHHHHHH-hC-CCCcHHHHHHHHHHHHHHHHHHHh--------CHHHHHHHHHHHHHHhCC-chHHHHH
Confidence 85 445677888888544 45 567999999999999999999863 457899999999999975 8999999
Q ss_pred HHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHHH
Q 006253 478 CGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCST-DETAPMVMQLVPLIMME 556 (653)
Q Consensus 478 ~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~l~~~l~~~ 556 (653)
|.++..+++.++ ..+.||++.+++.+..++...+. +...+..++++++.++...+ +.+.||+..+++.+...
T Consensus 548 ~~al~~l~~~~~------~~l~p~~~~il~~l~~~l~~~~~-~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~ 620 (963)
T 2x19_B 548 VSTLKKICRECK------YDLPPYAANIVAVSQDVLMKQIH-KTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQ 620 (963)
T ss_dssp HHHHHHHHHHTG------GGCTTTHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH------HHHHhhHHHHHHHHHHHhccCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 999999998764 45889999999999998875432 24678899999999999887 67899999999999999
Q ss_pred HHHHHHhhcCChhHHHhHHHHHHHHHhHHHHHHHHhCCCcc----------------hhhHhhHhHHHHHHHHHHHHhc-
Q 006253 557 LHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQ----------------TKYVFMQYADQMMGLFLRVFAI- 619 (653)
Q Consensus 557 l~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~----------------~~~~~~~~~~~i~~~l~~~l~~- 619 (653)
|++..+++ .+++.+ ..+...+++++.++++++.... .+..+.++...+++.+.+.++.
T Consensus 621 l~~~~~~~-~~~~~~----~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 695 (963)
T 2x19_B 621 LEKLAEEI-PNPSNK----LAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKW 695 (963)
T ss_dssp HHHHHSSC-SCHHHH----HHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCC-CCHHHH----HHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhc
Confidence 98865322 122222 2334589999999999985310 1223566888888888888765
Q ss_pred -cCcchhhhHHHHHHHHHHHhccCCccc-hhhhc
Q 006253 620 -RSATAHEEAMLAIGALAYATGLWRIRY-CLIVM 651 (653)
Q Consensus 620 -~~~~~~e~~~~~~~~l~~~~~~~f~~y-~~i~~ 651 (653)
.+..+.+.+..+++.++..+|.+|.|| |.+++
T Consensus 696 ~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~ 729 (963)
T 2x19_B 696 LNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCE 729 (963)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHhhcccccccHHHHHH
Confidence 346788999999999999999999999 66554
No 8
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=100.00 E-value=1e-41 Score=391.07 Aligned_cols=562 Identities=16% Similarity=0.229 Sum_probs=419.0
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHhhCcchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhc
Q 006253 3 AEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRW 82 (653)
Q Consensus 3 ~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~ 82 (653)
.++.++++.+++|+++.|++|+++|++++++ |+++..+..++.+ +.+.++|++|+++||+.+.+ .|
T Consensus 16 ~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~--p~~~~~l~~iL~~-s~~~~vr~~aa~~Lk~~i~~-----------~W 81 (1049)
T 3m1i_C 16 ALLDQVVSTFYQGSGVQQKQAQEILTKFQDN--PDAWQKADQILQF-STNPQSKFIALSILDKLITR-----------KW 81 (1049)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHS--TTGGGGHHHHHHH-CSCHHHHHHHHHHHHHHHHH-----------TG
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHhC--chHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHh-----------hC
Confidence 3688999999999999999999999999988 8999999999977 56899999999999999974 57
Q ss_pred cCCChHHHHHHHHHHHHhcCCC---------ChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHH
Q 006253 83 LSLDSSVKAQIKSFILKTLSSP---------AHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLE 153 (653)
Q Consensus 83 ~~l~~~~~~~i~~~ll~~l~~~---------~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~ 153 (653)
..++++.+..||+.+++.+.+. ++.+|++++.+++.|++.++| +.||++++.+.+.++ .++..++.++.
T Consensus 82 ~~l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p-~~Wp~ll~~L~~~~~-~~~~~~~~~l~ 159 (1049)
T 3m1i_C 82 KLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP-QNWPEFIPELIGSSS-SSVNVCENNMI 159 (1049)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHT-TCHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHHc-cChHHHHHHHH
Confidence 7899999999999999998753 368999999999999999999 699999999999996 56677889999
Q ss_pred HHHHHHhhhc---c------------cccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhc--CC---
Q 006253 154 TLGYICEEVS---S------------DAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANF--SN--- 213 (653)
Q Consensus 154 ~l~~l~~~~~---~------------~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~--~~--- 213 (653)
+|..+++... . +.+ ..++..+++.+.+.+.+ ..+.+++..+++|+..++.|++... ..
T Consensus 160 ~L~~l~eev~~~~~~~~~~~r~~~lk~~l-~~~~~~i~~~~~~~l~~-~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll 237 (1049)
T 3m1i_C 160 VLKLLSEEVFDFSAEQMTQAKALHLKNSM-SKEFEQIFKLCFQVLEQ-GSSSSLIVATLESLLRYLHWIPYRYIYETNIL 237 (1049)
T ss_dssp HHHHHHHHHHTSCTTTSCHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHH
T ss_pred HHHHHHHHHHHhcchhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHH
Confidence 9999987652 1 112 23456677777777764 3567899999999988777654211 00
Q ss_pred ----------hhHHHHHHHHHHhhh--------------------------------------------cCCcHHHHHHH
Q 006253 214 ----------DMERDYIMRVVCEAT--------------------------------------------LSPEVKIRQAA 239 (653)
Q Consensus 214 ----------~~~~~~il~~l~~~~--------------------------------------------~~~~~~~~~~~ 239 (653)
...+...+..+..++ .+.+.+.....
T Consensus 238 ~~l~~~~l~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l 317 (1049)
T 3m1i_C 238 ELLSTKFMTSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDL 317 (1049)
T ss_dssp HHHHTHHHHSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHH
T ss_pred HHHHHHhCCCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHH
Confidence 000000001110000 12234444556
Q ss_pred HHHHHHHHHHhHHh------hHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhH
Q 006253 240 FECLVAISSTYYEK------LAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYF 313 (653)
Q Consensus 240 ~~~l~~l~~~~~~~------~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (653)
++.+..+++.+.+. +.+++..+++.++......+++++..+++||..+++.... .. .....
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~--~~-----------~~~~~ 384 (1049)
T 3m1i_C 318 AMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFY--EP-----------LKKHI 384 (1049)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHH--ST-----------TCGGG
T ss_pred HHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHh--ch-----------hHHHH
Confidence 66665555544333 3456667888888887788889999999999999985211 00 12345
Q ss_pred HHhhhhhhHHHHHHHhhhccCCc-------------cCCCccccHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcC--
Q 006253 314 IKHALPVLVPLLLETLLKQEEDQ-------------DQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITK-- 378 (653)
Q Consensus 314 ~~~~l~~l~~~l~~~l~~~~ed~-------------~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~-- 378 (653)
.++++.++++.++..|.+.++++ .+|+|+|+.|+++.++|..++...++.+++.+.+.+.+.+.+
T Consensus 385 ~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~~ 464 (1049)
T 3m1i_C 385 YEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSE 464 (1049)
T ss_dssp GHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCCC
Confidence 67888899999999987654321 012345788999999999999888888899999999888863
Q ss_pred cchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcC-----CCchHHHHHHHHHHHHHHhhhccCCCCccccCc
Q 006253 379 QEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQ-----DPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQ 453 (653)
Q Consensus 379 ~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~-----d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~ 453 (653)
.+|+.|+++++++|++++++....-..+++.+++.+.... . |+++.+|.+++|++|++++++.. ..
T Consensus 465 ~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~-~~~~~~~~~~~v~~~~~~~lgry~~~~~~--------~~ 535 (1049)
T 3m1i_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLT-VKKRGKDNKAVVASDIMYVVGQYPRFLKA--------HW 535 (1049)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHT-TSSCSHHHHHHHHHHHHHHHHHCHHHHHH--------CH
T ss_pred CCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHH-hhhccccchHHHHHHHHHHHHHHHHHHHh--------HH
Confidence 6899999999999999987642222356788888877643 2 46788888999999999999863 46
Q ss_pred cchHHHHHHHHHhccc-hhhHHHHHHHHHHHHHhcccCC--CCCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHH
Q 006253 454 GNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDA--ISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYET 530 (653)
Q Consensus 454 ~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~~~~~~--~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~ 530 (653)
.++..+++.+++.+.+ +++|+.+||.++.++++.+... ...+..+.||++.+++.+..++...+. . -...++++
T Consensus 536 ~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~--~-~~~~~~ea 612 (1049)
T 3m1i_C 536 NFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQP--Q-QVHTFYKA 612 (1049)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCH--H-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCH--H-HHHHHHHH
Confidence 8999999999999987 7999999999999999986431 012344569999999999998887542 2 34588999
Q ss_pred HHHHHHhccc--ccHHHHHHHHHHHHHHHHHHHHhhcCChh---HHHhHHHHHHHHHhHHHHHHHHhCCCcchhhHhhHh
Q 006253 531 LNEVVRCSTD--ETAPMVMQLVPLIMMELHQTLEAQKLSSD---EREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQY 605 (653)
Q Consensus 531 l~~l~~~~~~--~~~~~~~~l~~~l~~~l~~~~~~~~~~~~---~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~ 605 (653)
++.++...|. ...+|+..+++.+++.|...++....+.+ +.+....+ ..+++|++.+++++|+. |.|+
T Consensus 613 i~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l-~~~l~~~~~~~~~l~~~------f~p~ 685 (1049)
T 3m1i_C 613 CGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKII-ANIIKTNVAVCTSMGAD------FYPQ 685 (1049)
T ss_dssp HHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHH-HHHHHHHHHHHHHHGGG------GHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHH-HHHHHHHHHHHHHhhHH------HHHH
Confidence 9999999983 47889999999999999887653221111 11111122 24678888888888887 7776
Q ss_pred HHHHHHHHH
Q 006253 606 ADQMMGLFL 614 (653)
Q Consensus 606 ~~~i~~~l~ 614 (653)
+..++..++
T Consensus 686 ~~~i~~~~l 694 (1049)
T 3m1i_C 686 LGHIYYNML 694 (1049)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 665554433
No 9
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=100.00 E-value=6e-39 Score=358.64 Aligned_cols=564 Identities=15% Similarity=0.222 Sum_probs=414.3
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHhhCcchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhcc
Q 006253 4 EVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWL 83 (653)
Q Consensus 4 ~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~ 83 (653)
++.++++.+.+|+++.|++|+++|++++++ |+++..+..++.+ +.++++|++|+++|++.+++ .|.
T Consensus 17 ~Le~av~~ly~p~~~~r~~A~~~L~~~q~s--p~aw~~~~~iL~~-s~~~~vR~faa~~Lk~~I~~-----------~W~ 82 (1023)
T 4hat_C 17 LLDQVVSTFYQGSGVQQKQAQEILTKFQDN--PDAWQKADQILQF-STNPQSKFIALSILDKLITR-----------KWK 82 (1023)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHC--TTGGGGHHHHHHH-CCCHHHHHHHHHHHHHHHHH-----------HGG
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHcC--ccHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHh-----------hhh
Confidence 678899999999988999999999999998 8888888888875 55889999999999999985 577
Q ss_pred CCChHHHHHHHHHHHHhcCC----C-----ChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHH
Q 006253 84 SLDSSVKAQIKSFILKTLSS----P-----AHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLET 154 (653)
Q Consensus 84 ~l~~~~~~~i~~~ll~~l~~----~-----~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~ 154 (653)
.++++.+..+|+.+++.+.. + .+.++++++.+++.|+.+++| ..||++++.+.+.+++ ++.....++.+
T Consensus 83 ~L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p-~~Wp~~l~dL~~~l~~-~~~~~~~~L~i 160 (1023)
T 4hat_C 83 LLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP-QNWPEFIPELIGSSSS-SVNVCENNMIV 160 (1023)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHTTT-CHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhCh-hhchHHHHHHHHHhcC-CHHHHHHHHHH
Confidence 89999999999999998753 2 357889999999999999999 5999999999999965 45668888999
Q ss_pred HHHHHhhhc---ccccc-----------hhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHH
Q 006253 155 LGYICEEVS---SDAVE-----------QDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYI 220 (653)
Q Consensus 155 l~~l~~~~~---~~~~~-----------~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~i 220 (653)
|..+.++.. .+.++ ...+..+++.+.+.+.. ..++++...+++|+..++.|++-.... ...+
T Consensus 161 L~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~-~~~~~l~~~~L~~l~s~l~WI~i~~i~---~~~l 236 (1023)
T 4hat_C 161 LKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQ-GASSSLIVATLESLLRYLHWIPYRYIY---ETNI 236 (1023)
T ss_dssp HHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTTSCTHHHH---SSSH
T ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhCCHHHhc---chhH
Confidence 999888741 11121 23455666666666654 456677888999998888775421100 0112
Q ss_pred HHHHH-hhhc-------------------------------------------------------------CCcHHHHHH
Q 006253 221 MRVVC-EATL-------------------------------------------------------------SPEVKIRQA 238 (653)
Q Consensus 221 l~~l~-~~~~-------------------------------------------------------------~~~~~~~~~ 238 (653)
++.++ .++. +.|.+..+.
T Consensus 237 l~~l~~~~L~~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~ 316 (1023)
T 4hat_C 237 LELLSTKFMTSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQD 316 (1023)
T ss_dssp HHHHHTHHHHSHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHH
Confidence 22222 2221 112333334
Q ss_pred HHHHHHHHHHHhHHhhH--Hh----HHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhh
Q 006253 239 AFECLVAISSTYYEKLA--PY----IQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFY 312 (653)
Q Consensus 239 ~~~~l~~l~~~~~~~~~--~~----l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (653)
.+.++..+.+.+...+. +. +...+..++.....++.++...+++||..+++... .+. ....
T Consensus 317 l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~------~e~-------~~~~ 383 (1023)
T 4hat_C 317 LAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLF------YEP-------LKKH 383 (1023)
T ss_dssp HHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT------TST-------TTGG
T ss_pred HHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHH------hch-------HHHH
Confidence 44444444444433332 11 11222344444445677888899999999998431 100 1335
Q ss_pred HHHhhhhhhHHHHHHHhhhccCC-----ccC--------CCccccHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcC-
Q 006253 313 FIKHALPVLVPLLLETLLKQEED-----QDQ--------DEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITK- 378 (653)
Q Consensus 313 ~~~~~l~~l~~~l~~~l~~~~ed-----~~~--------d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~- 378 (653)
..++++.++++.++..|.+++++ +++ |.++...-+...++|..++...++++++.+++.+.+.+.+
T Consensus 384 ~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~~~~~~~~~~~l~~~l~~~ 463 (1023)
T 4hat_C 384 IYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGS 463 (1023)
T ss_dssp GGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHSST
T ss_pred HHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCC
Confidence 66888899999999999987632 111 1111112223348888888888888889999998887764
Q ss_pred -cchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcC-----CCchHHHHHHHHHHHHHHhhhccCCCCccccC
Q 006253 379 -QEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQ-----DPNNHVKDTTAWTLGRMFEFLHGSTLETPIIN 452 (653)
Q Consensus 379 -~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~-----d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 452 (653)
.+|+.|+|+++|+|+|++++..+...++++.+++.++..+ . |+++.||.+++|++|++++|+.. +
T Consensus 464 ~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~-~~~~~~d~k~~v~~t~~~~lGry~~wl~~--------~ 534 (1023)
T 4hat_C 464 EWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLC-VKKRGKDNKAVVASDIMYVVGQYPRFLKA--------H 534 (1023)
T ss_dssp TCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHH-HHCCSHHHHHHHHHHHHHHHHTCHHHHHH--------C
T ss_pred CCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhh-hccccCcchHHHHHHHHHHHHHHHHHHhc--------c
Confidence 6799999999999999998864456789999999999877 5 57788999999999999999963 6
Q ss_pred ccchHHHHHHHHHhccc-hhhHHHHHHHHHHHHHhcccCC--CCCCCCCchhHHHHHHHHHHhccccccchhchHHHHHH
Q 006253 453 QGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDA--ISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYE 529 (653)
Q Consensus 453 ~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~~~~~~--~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~ 529 (653)
..+++++++.+++.+.+ +++|+..||+|+..+|+.+... ...+....||++.+++.+...+...+ ..-+..+++
T Consensus 535 ~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~---~~~~~~lye 611 (1023)
T 4hat_C 535 WNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQ---PQQVHTFYK 611 (1023)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSC---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCC---HHHHHHHHH
Confidence 78999999999999986 6899999999999999987532 01234567999999999999887554 334468999
Q ss_pred HHHHHHHhcccc--cHHHHHHHHHHHHHHHHHHHHhhcCCh---hHHHhHHHHHHHHHhHHHHHHHHhCCCcchhhHhhH
Q 006253 530 TLNEVVRCSTDE--TAPMVMQLVPLIMMELHQTLEAQKLSS---DEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQ 604 (653)
Q Consensus 530 ~l~~l~~~~~~~--~~~~~~~l~~~l~~~l~~~~~~~~~~~---~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~ 604 (653)
+++.+++..|.. ...++..+++.+...|++..+....++ .|.+....+. .+++|++.++.++|.. |.|
T Consensus 612 ai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~-~il~~~~~v~~~lg~~------f~~ 684 (1023)
T 4hat_C 612 ACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIA-NIIKTNVAVCTSMGAD------FYP 684 (1023)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHH-HHHHHHHHHHHHHGGG------GHH
T ss_pred HHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHH-HHHHHHHHHHHHhcHH------HHH
Confidence 999999999864 455899999999999998875211010 0111111233 4889999999999999 999
Q ss_pred hHHHHHHHHHHHHhc
Q 006253 605 YADQMMGLFLRVFAI 619 (653)
Q Consensus 605 ~~~~i~~~l~~~l~~ 619 (653)
++.++++.+++..+.
T Consensus 685 ~~~~i~~~~l~~y~~ 699 (1023)
T 4hat_C 685 QLGHIYYNMLQLYRA 699 (1023)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999887655
No 10
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=100.00 E-value=7.9e-38 Score=349.81 Aligned_cols=601 Identities=10% Similarity=0.084 Sum_probs=424.4
Q ss_pred hHHHHHHHHhcCC--ChHHHHHHHHHHHHHHhhCcchHHHHHHHHHhcCCC-ChhHHHHHHHHHhhhcchhhhhhHHHhh
Q 006253 3 AEVTQILLNAQSV--DGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEK-PVESRKLAGLILKNALDAKEQHRKFELV 79 (653)
Q Consensus 3 ~~l~~ll~~~~s~--d~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~-~~~~r~~a~~~l~~~i~~~~~~~~~~~~ 79 (653)
+++.++++.+++| |++.|++|+++|++++++ |+.+..+..++.++.. ++++|++|+.+|++.++
T Consensus 6 ~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~s--p~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~----------- 72 (980)
T 3ibv_A 6 QDVENAVEAALDPSVGPIIKQQATDFIGSLRSS--STGWKICHEIFSEKTKYKPSTRLICLQTLSEKVR----------- 72 (980)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHS--TTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcC--hhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH-----------
Confidence 4788899888887 689999999999999998 8999999999987543 89999999999999885
Q ss_pred hhccCCChH----HHHHHHHHHHHhcCC-----CChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCCh-hHHH
Q 006253 80 QRWLSLDSS----VKAQIKSFILKTLSS-----PAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPP-HTKQ 149 (653)
Q Consensus 80 ~~~~~l~~~----~~~~i~~~ll~~l~~-----~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~-~~~~ 149 (653)
.++++ .+..+|+.+++.+.. .++.+|++++.+++.++.+++| ..||++++.+++.++++++ ....
T Consensus 73 ----~l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p-~~Wp~~i~~l~~~~~~~~~~~~~~ 147 (980)
T 3ibv_A 73 ----EWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYP-SNWNDFFASLQGVIAASSQSEFSN 147 (980)
T ss_dssp ----HCCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHHHHCCHHHHH
T ss_pred ----hCChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCc-ccCchHHHHHHHHhcCCChhHHHH
Confidence 36788 899999999998763 3478999999999999999999 5999999999999987554 3455
Q ss_pred HHHHHHHHHHhhhccccc--c--------------hh-hHhHHHHHHHhcccC--CCCCHHHHHHHHHHHHHHHHhhhhh
Q 006253 150 ATLETLGYICEEVSSDAV--E--------------QD-HVNKILTAVVQGMNA--SESNNDVRLAATRALYNALGFAQAN 210 (653)
Q Consensus 150 ~~l~~l~~l~~~~~~~~~--~--------------~~-~~~~l~~~l~~~l~~--~~~~~~vr~~a~~~l~~~~~~~~~~ 210 (653)
..+++|..+.++.....+ + .. .+..+++.+.+.+.. ...+++++..+++|+..++.|++..
T Consensus 148 ~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~ 227 (980)
T 3ibv_A 148 FYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININ 227 (980)
T ss_dssp HHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHH
T ss_pred HHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHH
Confidence 667777766677521111 0 01 123334444444431 0357789999999999999886532
Q ss_pred cCChhHHHHHHHHHHhhhc--------------------------------------------CCcHHHHHHHHHHHHHH
Q 006253 211 FSNDMERDYIMRVVCEATL--------------------------------------------SPEVKIRQAAFECLVAI 246 (653)
Q Consensus 211 ~~~~~~~~~il~~l~~~~~--------------------------------------------~~~~~~~~~~~~~l~~l 246 (653)
.... +.+++.++..+. ++|.++.+..++.+..+
T Consensus 228 ~i~~---~~ll~~l~~~L~~~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ 304 (980)
T 3ibv_A 228 LIVN---EPCMNLLYSFLQIEELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQ 304 (980)
T ss_dssp HHHC---HHHHHHHHHHTTSHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHH
T ss_pred hhhc---chHHHHHHHHcCChHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 2100 234444443332 23444444444444333
Q ss_pred HHHhHH--------------hhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhh
Q 006253 247 SSTYYE--------------KLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFY 312 (653)
Q Consensus 247 ~~~~~~--------------~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (653)
.+.... ...+++..+++.++..+.++++++...+++||..+.+....... . -....
T Consensus 305 ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~--------~--~~~~~ 374 (980)
T 3ibv_A 305 GVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESS--------S--KELSA 374 (980)
T ss_dssp HHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTT--------S--CCCCH
T ss_pred HHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccc--------c--ccccH
Confidence 322111 11245667888899999999999999999999998875321100 0 01224
Q ss_pred HHHhhhhhhHHHHHHHhhhccCCcc------CCCccc-cHhhhHHHHHHHHHhhcCCCchh----chHHHHHhhhc---C
Q 006253 313 FIKHALPVLVPLLLETLLKQEEDQD------QDEGAW-NIAMAGGTCLGLVARTVGDDIVP----LVMPFVEENIT---K 378 (653)
Q Consensus 313 ~~~~~l~~l~~~l~~~l~~~~ed~~------~d~~~~-~~r~~a~~~L~~l~~~~~~~~~~----~l~~~l~~~l~---~ 378 (653)
..++++.++++.++.+|.+.++++. ||++.+ ..|+.....++.++...++.++. .+.+.+.+.+. +
T Consensus 375 ~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~ 454 (980)
T 3ibv_A 375 SLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPE 454 (980)
T ss_dssp HHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCC
Confidence 5678899999999999998654321 111122 47776664455544444566677 66666666663 4
Q ss_pred cchhhHHHHHHHHHHhhcCCCCCc-----chHHHHHHHHHHHHHh----cCCCchHHHHHHHHHHHHHHhhhccCCCCcc
Q 006253 379 QEWRQREAATYAFGSILEGPSPEK-----LVPLVNIALNFMLTAL----MQDPNNHVKDTTAWTLGRMFEFLHGSTLETP 449 (653)
Q Consensus 379 ~~~~~r~aal~~l~~i~~~~~~~~-----~~~~l~~l~~~ll~~l----~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 449 (653)
.+|+.+||++++++.+++++.... ..+.++.+++.+...+ .+++||.||.++++++|++++|+..
T Consensus 455 ~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~------ 528 (980)
T 3ibv_A 455 NSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY------ 528 (980)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT------
T ss_pred CCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc------
Confidence 679999999999999999974211 1123445555555554 1389999999999999999999973
Q ss_pred ccCccchHHHHHHHHH--hccc-hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccc---cc-h--
Q 006253 450 IINQGNCQQIISVLLQ--SMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHRED---AG-E-- 520 (653)
Q Consensus 450 ~~~~~~~~~il~~l~~--~l~d-~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~---~~-~-- 520 (653)
+.++++++++.++. ++.+ +++|+.+|++++.++|+.+. ..+.||++.++..+..++.... .+ +
T Consensus 529 --~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~------~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~ 600 (980)
T 3ibv_A 529 --ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIK------KQVVNYTESSLAMLGDLLNISVSPVTDMDAP 600 (980)
T ss_dssp --CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTT------TTCSSSHHHHHHHTTGGGCCCCCCCCC--CS
T ss_pred --CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhh------HHhhhHHHHHHHHHHHhhcCcCCCCCccccc
Confidence 56899999999999 8876 68999999999999999874 4689999999999988776311 00 0
Q ss_pred ------------hchHHHHHHHHHHHHHhccc---ccHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHhHH
Q 006253 521 ------------SRLRTAAYETLNEVVRCSTD---ETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCL 585 (653)
Q Consensus 521 ------------~~~~~~~~~~l~~l~~~~~~---~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~i 585 (653)
.+-+...++++|.++...+. +...++..+++++++.++..++....++++.. .+ ...+.++
T Consensus 601 ~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~---~i-~~~i~al 676 (980)
T 3ibv_A 601 VPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENII---SV-YCSLMAI 676 (980)
T ss_dssp SCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHH---HH-HHHHHHH
T ss_pred ccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHH---HH-HHHHHHH
Confidence 11245799999999998763 45679999999999999988764322222221 22 2467888
Q ss_pred HHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhc--cCcchhhhHHHHHHHHHHHhccCCccc-hhhhcC
Q 006253 586 QVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAI--RSATAHEEAMLAIGALAYATGLWRIRY-CLIVMG 652 (653)
Q Consensus 586 ~~i~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~--~~~~~~e~~~~~~~~l~~~~~~~f~~y-~~i~~~ 652 (653)
+++++++........-+...+.++++.++..++. .+..+|+.+..++.+++.++|.++.|| |.++.+
T Consensus 677 ~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ 746 (980)
T 3ibv_A 677 GNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISI 746 (980)
T ss_dssp HHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHH
T ss_pred HHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHH
Confidence 9999987643110000334566777777777774 467899999999999999999999999 776653
No 11
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=1.2e-36 Score=356.60 Aligned_cols=563 Identities=16% Similarity=0.200 Sum_probs=441.0
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHhhC--------cchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhh
Q 006253 3 AEVTQILLNAQSVDGTVRKQAEESLKQYQEQN--------LPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHR 74 (653)
Q Consensus 3 ~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~--------~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~ 74 (653)
.++.++|.++.|||+++|++|.+.|.+..+.+ ...++..+++.+.+ .+..+|..|+..+++...
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d--~~~~vR~~A~~~L~~l~~------ 77 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLED--KNGEVQNLAVKCLGPLVS------ 77 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTC--SSHHHHHHHHHHHHHHHT------
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHH------
Confidence 67999999999999999999999998654432 13567778787764 589999999999988664
Q ss_pred HHHhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCC--------CCchHHHHHHHhhc-CCCh
Q 006253 75 KFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHK--------QWPELIGALLSNIH-QLPP 145 (653)
Q Consensus 75 ~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~--------~~~~l~~~l~~~l~-~~~~ 145 (653)
.++++....+++.+++.+.++++.+|..++.+++.++....+.. .|++++|.|++.+. ++++
T Consensus 78 ---------~~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~ 148 (1230)
T 1u6g_C 78 ---------KVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDV 148 (1230)
T ss_dssp ---------TSCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCH
T ss_pred ---------hCCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCch
Confidence 24567788899999999999999999999999999998765421 49999999999998 5889
Q ss_pred hHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHH
Q 006253 146 HTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVC 225 (653)
Q Consensus 146 ~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~ 225 (653)
.+|..++.++..+++.. +..+ .++...+++.+.+.+. ++++.+|..|+.++..++...++.+. +.+++.+.
T Consensus 149 ~~~~~al~~l~~~~~~~-~~~l-~~~~~~ll~~l~~~L~--~~~~~vR~~a~~al~~l~~~~~~~~~-----~~~l~~l~ 219 (1230)
T 1u6g_C 149 SVQLEALDIMADMLSRQ-GGLL-VNFHPSILTCLLPQLT--SPRLAVRKRTIIALGHLVMSCGNIVF-----VDLIEHLL 219 (1230)
T ss_dssp HHHHHHHHHHHHHHHHT-CSSC-TTTHHHHHHHHGGGGG--CSSHHHHHHHHHHHHHHTTTC----C-----TTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-HhHH-HHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHhcCHHHH-----HHHHHHHH
Confidence 99999999999999887 5556 4688999999999998 78899999999999998876654331 33455554
Q ss_pred hhhcC-CcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCC
Q 006253 226 EATLS-PEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSG 304 (653)
Q Consensus 226 ~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 304 (653)
..+.+ .++.+|..+++++..++...++.+.+|++.++|.+++.+++.++++|..++.++..++..
T Consensus 220 ~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~-------------- 285 (1230)
T 1u6g_C 220 SELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRR-------------- 285 (1230)
T ss_dssp HHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC--------------
T ss_pred HHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH--------------
Confidence 44432 335678889999999999988888999999999999999999999999999988888762
Q ss_pred CCCCchhhHHHhhhhhhHHHHHHHhhhcc--------------------CCc--------cCCCccccHhhhHHHHHHHH
Q 006253 305 DSDIPCFYFIKHALPVLVPLLLETLLKQE--------------------EDQ--------DQDEGAWNIAMAGGTCLGLV 356 (653)
Q Consensus 305 ~~~~~~~~~~~~~l~~l~~~l~~~l~~~~--------------------ed~--------~~d~~~~~~r~~a~~~L~~l 356 (653)
+..-+.++++.++|.+++.+.+.+ +++ ++++..|.+|.+|..+++.+
T Consensus 286 -----~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l 360 (1230)
T 1u6g_C 286 -----CPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAV 360 (1230)
T ss_dssp -----TTCCCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHH
T ss_pred -----ChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHH
Confidence 112235667788888877765310 000 01123589999999999999
Q ss_pred HhhcCC---CchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCC------------------CCcchHHHHHHHHHHH
Q 006253 357 ARTVGD---DIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPS------------------PEKLVPLVNIALNFML 415 (653)
Q Consensus 357 ~~~~~~---~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~------------------~~~~~~~l~~l~~~ll 415 (653)
+...|+ .+++.+++.+...+.+.++.+|.+++.+++.+....+ ...+..+++.+++.+.
T Consensus 361 ~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~ 440 (1230)
T 1u6g_C 361 VSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALH 440 (1230)
T ss_dssp HTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHH
T ss_pred HHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHH
Confidence 997774 4566778888888888899999999998887765221 1233567778888888
Q ss_pred HHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc-hh--hHHHHHHHHHHHHHhcccCCC
Q 006253 416 TALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VP--NVAEKACGALYFLAQGFEDAI 492 (653)
Q Consensus 416 ~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~--~v~~~a~~al~~~~~~~~~~~ 492 (653)
..+ +|+++.+|.+++.+++.++..++. ...+++..+++.+...+.| ++ .++..++.++..+++..+
T Consensus 441 ~~l-~~~~~~vr~~~~~~L~~l~~~~~~-------~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~--- 509 (1230)
T 1u6g_C 441 KQM-KEKSVKTRQCCFNMLTELVNVLPG-------ALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHS--- 509 (1230)
T ss_dssp HHT-TCSCHHHHHHHHHHHHHHHHHSTT-------TTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSC---
T ss_pred HHh-ccCCHHHHHHHHHHHHHHHHHchh-------hhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCC---
Confidence 889 999999999999999999998642 3467999999999999997 33 889999999999987654
Q ss_pred CCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhccc-------ccHHHHHHHHHHHHHHHHHHHHhhc
Q 006253 493 SPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTD-------ETAPMVMQLVPLIMMELHQTLEAQK 565 (653)
Q Consensus 493 ~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~-------~~~~~~~~l~~~l~~~l~~~~~~~~ 565 (653)
+..+.||++.+++.++..+++.. ..++..++.+++.+++..|. .+.||+..++|.++..+..
T Consensus 510 --~~~~~~~l~~llp~L~~~l~d~~---~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~------ 578 (1230)
T 1u6g_C 510 --PQVFHPHVQALVPPVVACVGDPF---YKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKA------ 578 (1230)
T ss_dssp --GGGGHHHHTTTHHHHHHHHTCSS---HHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSC------
T ss_pred --HHHHHhHHHHHHHHHHHHHcccc---hHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhc------
Confidence 35588999999999999887654 56777899999999988776 7899999999999887742
Q ss_pred CChhHHHhHHHHHHHHHhHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHH----------------------------
Q 006253 566 LSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVF---------------------------- 617 (653)
Q Consensus 566 ~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~l~~~l---------------------------- 617 (653)
.+.+. .+|..++.+++.++...|.. +.++.+.+++.+...+
T Consensus 579 -~d~~~----~vr~~a~~~lg~L~~~~g~~------~~~~~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~~~~~~~~ 647 (1230)
T 1u6g_C 579 -ADIDQ----EVKERAISCMGQIICNLGDN------LGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPV 647 (1230)
T ss_dssp -SSSCH----HHHHHHHHHHHHHHHHTGGG------CCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCCCCHHH
T ss_pred -cCCCH----HHHHHHHHHHHHHHHHhCch------hhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHhCccccchHHH
Confidence 11222 47778889999999988876 5555565555555444
Q ss_pred ------------hccCcchhhhHHHHHHHHHHHhccCC
Q 006253 618 ------------AIRSATAHEEAMLAIGALAYATGLWR 643 (653)
Q Consensus 618 ------------~~~~~~~~e~~~~~~~~l~~~~~~~f 643 (653)
...+..+|+.++.+++.++...+..+
T Consensus 648 ~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~ 685 (1230)
T 1u6g_C 648 LGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSL 685 (1230)
T ss_dssp HHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccC
Confidence 33456688899999999999888654
No 12
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=100.00 E-value=4e-35 Score=325.31 Aligned_cols=573 Identities=16% Similarity=0.233 Sum_probs=411.6
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHhhCcchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhcc
Q 006253 4 EVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWL 83 (653)
Q Consensus 4 ~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~ 83 (653)
.+.++++.+.+|+++.|++|+++|++++++ |+.+..+..++.+ +.++++|++|+.+|++.+++ .|.
T Consensus 29 ~Le~lv~~ly~p~~~~r~qA~~~L~q~q~s--p~aw~~~~~iL~~-s~~~~vR~fAa~~L~~~I~~-----------~W~ 94 (1073)
T 3gjx_A 29 LLDNVVNCLYHGEGAQQRMAQEVLTHLKEH--PDAWTRVDTILEF-SQNMNTKYYGLQILENVIKT-----------RWK 94 (1073)
T ss_dssp HHHHHHHTTTCSSHHHHHHHHHHHHTSSCC--SCHHHHHTCC----CCSHHHHHHHHHHHHHHHHH-----------TGG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHcC--chHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHh-----------hhh
Confidence 578899999999999999999999999988 8888888888876 56899999999999999985 577
Q ss_pred CCChHHHHHHHHHHHHhcCC---------CChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHH
Q 006253 84 SLDSSVKAQIKSFILKTLSS---------PAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLET 154 (653)
Q Consensus 84 ~l~~~~~~~i~~~ll~~l~~---------~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~ 154 (653)
.++++.+..+|+.+++.+.. .++.++++++.+++.++.+++| ..||++++.+.+.+++ ++..+..++.+
T Consensus 95 ~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P-~~Wp~fi~dLv~~~~~-~~~~~~~~L~I 172 (1073)
T 3gjx_A 95 ILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWP-KHWPTFISDIVGASRT-SESLCQNNMVI 172 (1073)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHHH-CHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhCh-hhccHHHHHHHHHhCC-CHHHHHHHHHH
Confidence 89999999999999998743 2468889999999999999999 5999999999998864 55678889999
Q ss_pred HHHHHhhhcc---cccc-----------hhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHH
Q 006253 155 LGYICEEVSS---DAVE-----------QDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYI 220 (653)
Q Consensus 155 l~~l~~~~~~---~~~~-----------~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~i 220 (653)
|..+.++... ..++ ...+..+++.+.+.+.. ..++++...+++++..++.|++-... ....+
T Consensus 173 L~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~-~~~~~lv~~~L~~L~~~~sWI~i~~i---~~~~l 248 (1073)
T 3gjx_A 173 LKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMEN-SQNAPLVHATLETLLRFLNWIPLGYI---FETKL 248 (1073)
T ss_dssp HHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTTTSCTHHH---HSSSH
T ss_pred HHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCCHHHHHHHHHHHHHHHHhcCHHHh---ccchH
Confidence 9999988411 1011 12345667666666754 46788889999999999998753211 01235
Q ss_pred HHHH-HhhhcCCcHHHHHHHHHHHHHHHHHh-------------------------------------------------
Q 006253 221 MRVV-CEATLSPEVKIRQAAFECLVAISSTY------------------------------------------------- 250 (653)
Q Consensus 221 l~~l-~~~~~~~~~~~~~~~~~~l~~l~~~~------------------------------------------------- 250 (653)
++.+ +..+ +++++|..+++||..++...
T Consensus 249 l~~L~~~~L--~~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~ 326 (1073)
T 3gjx_A 249 ISTLIYKFL--NVPMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSL 326 (1073)
T ss_dssp HHHHHHHTS--SSHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHH
T ss_pred HHHHHHHhc--CChHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHH
Confidence 5555 3444 35566667777776666531
Q ss_pred ---------HHhhH------HhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcC--CCCC--C--CCCC-
Q 006253 251 ---------YEKLA------PYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYG--GDFS--G--DSDI- 308 (653)
Q Consensus 251 ---------~~~~~------~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~~--~--~~~~- 308 (653)
...+. +++...+..++.....++.++...+++||..+...-..-. ++. .... | ....
T Consensus 327 ~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~-~~~~~~~~~~~~~~~~~~~ 405 (1073)
T 3gjx_A 327 FLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRES-PFSTSASPLLSGSQHFDIP 405 (1073)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHC-CSCCCCSSCTTSSCCSCSC
T ss_pred HHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhc-cccccccccccccccccch
Confidence 10000 0011111222333335677888889999999987643211 000 0000 0 0001
Q ss_pred chhhHHHhhhhhhHHHHHHHhhhccCC----ccCCC---------ccccHhhhHHHHHHHHHhhcCCCchhchHHHHHhh
Q 006253 309 PCFYFIKHALPVLVPLLLETLLKQEED----QDQDE---------GAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEEN 375 (653)
Q Consensus 309 ~~~~~~~~~l~~l~~~l~~~l~~~~ed----~~~d~---------~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~ 375 (653)
..+....+++.+++.+++..|.+++|. +|+++ ++.+.++.-.++|..++...+++....+++.+.+.
T Consensus 406 ~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~i~~~~l~~~ 485 (1073)
T 3gjx_A 406 PRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTEIIMTKKLQNQ 485 (1073)
T ss_dssp HHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 123456788888999999999876642 11111 11234556667887777666677888888888776
Q ss_pred hcC--cchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCC-----chHHHHHHHHHHHHHHhhhccCCCCc
Q 006253 376 ITK--QEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDP-----NNHVKDTTAWTLGRMFEFLHGSTLET 448 (653)
Q Consensus 376 l~~--~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~-----~~~vr~~a~~~l~~~~~~~~~~~~~~ 448 (653)
++. .+|..++++++++|+++....+..-.++++.+++.++... .++ .+.++...+|++|++++|...
T Consensus 486 ~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~-e~~~~kd~k~~vas~i~~vlgrY~~wl~~----- 559 (1073)
T 3gjx_A 486 VNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLC-EQKRGKDNKAIIASNIMYIVGQYPRFLRA----- 559 (1073)
T ss_dssp HTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHH-HHSCSHHHHHHHHHHHHHHHHHCHHHHHH-----
T ss_pred hcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhccc-ccccccchhHHHHHHHHHHHhhhHHHHHh-----
Confidence 654 4699999999999999965432234578999999998876 443 456788889999999999973
Q ss_pred cccCccchHHHHHHHHHhccc-hhhHHHHHHHHHHHHHhcccCCC--CCCCCCchhHHHHHHHHHHhccccccchhchHH
Q 006253 449 PIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAI--SPSSPLTPFFQEIVQALLTVTHREDAGESRLRT 525 (653)
Q Consensus 449 ~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~~~~~~~--~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~ 525 (653)
+.++++.+++.+++.+.+ ++.|+..||.|+..+|+.++..- .......||++.++..+......-+ ...+ .
T Consensus 560 ---h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~--~~~~-~ 633 (1073)
T 3gjx_A 560 ---HWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQ--PQQV-H 633 (1073)
T ss_dssp ---CHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCC--HHHH-H
T ss_pred ---CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcC--HHHH-H
Confidence 688999999999999987 79999999999999999986530 1123467899999999988877655 2344 4
Q ss_pred HHHHHHHHHHHhccccc--HHHHHHHHHHHHHHHHHHHHhhcCCh---hHHHhHHHHHHHHHhHHHHHHHHhCCCcchhh
Q 006253 526 AAYETLNEVVRCSTDET--APMVMQLVPLIMMELHQTLEAQKLSS---DEREKQNEIQGLLCGCLQVIIQKLGSSEQTKY 600 (653)
Q Consensus 526 ~~~~~l~~l~~~~~~~~--~~~~~~l~~~l~~~l~~~~~~~~~~~---~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~ 600 (653)
..++++|.++...|... ..++..+++.....|+..+++...+. .|.+....+. .+++|...++.++|..
T Consensus 634 ~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~-~il~~n~~v~~~~g~~----- 707 (1073)
T 3gjx_A 634 TFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLG-SILKTNVRACKAVGHP----- 707 (1073)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHH-HHHHHHHHHHHHHCGG-----
T ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHH-HHHhhhHHHHhhcchh-----
Confidence 79999999999999753 56899999999999998875211011 1222112233 4889999999999999
Q ss_pred HhhHhHHHHHHHHHHHHh
Q 006253 601 VFMQYADQMMGLFLRVFA 618 (653)
Q Consensus 601 ~~~~~~~~i~~~l~~~l~ 618 (653)
|.|++.+++..+++..+
T Consensus 708 -f~~~~~~i~~~~l~~y~ 724 (1073)
T 3gjx_A 708 -FVIQLGRIYLDMLNVYK 724 (1073)
T ss_dssp -GHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHH
Confidence 99999999887776654
No 13
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=1.6e-32 Score=311.48 Aligned_cols=565 Identities=12% Similarity=0.140 Sum_probs=445.8
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHhh-----CcchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhh
Q 006253 7 QILLNAQSVDGTVRKQAEESLKQYQEQ-----NLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQR 81 (653)
Q Consensus 7 ~ll~~~~s~d~~~r~~A~~~L~~~~~~-----~~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~ 81 (653)
.+++.+.++++.+|+++-+.|..+... .||+++..|.+.+.++ .++++|..|..+++...+.... .
T Consensus 99 ~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~-~~~~~r~~al~~l~~l~~~~~~--------~ 169 (861)
T 2bpt_A 99 NALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAE-QPENVKRASLLALGYMCESADP--------Q 169 (861)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTT-SCHHHHHHHHHHHHHHHHTSST--------T
T ss_pred HHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHcCCh--------h
Confidence 456677788899999999999876443 4678888888888752 2789999999888887653210 0
Q ss_pred ccCCChHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHHHhhh---cCC-CCCchHHHHHHHhhcCCChhHHHHHHHHH
Q 006253 82 WLSLDSSVKAQIKSFILKTLSSP--AHDARSTASQVVAKVAGIE---LPH-KQWPELIGALLSNIHQLPPHTKQATLETL 155 (653)
Q Consensus 82 ~~~l~~~~~~~i~~~ll~~l~~~--~~~vr~~~~~~l~~ia~~~---~~~-~~~~~l~~~l~~~l~~~~~~~~~~~l~~l 155 (653)
.. .-......+.+.+.+.+.++ ++.+|..+..+++.+.... ... ..|+.+++.+.+.+.++++.+|..++.+|
T Consensus 170 ~~-~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l 248 (861)
T 2bpt_A 170 SQ-ALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCL 248 (861)
T ss_dssp SS-TTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred hh-HHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 00 11345667888888999887 7899999999999876432 110 12567889999989999999999999999
Q ss_pred HHHHhhhcccccchhhHh-HHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhh--c----------CC---hhHHHH
Q 006253 156 GYICEEVSSDAVEQDHVN-KILTAVVQGMNASESNNDVRLAATRALYNALGFAQAN--F----------SN---DMERDY 219 (653)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~--~----------~~---~~~~~~ 219 (653)
..+++.. ++.+ .+++. .+++.+...+. +.+.++|..|+.++..++...... . .. ......
T Consensus 249 ~~l~~~~-~~~~-~~~l~~~l~~~~~~~~~--~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (861)
T 2bpt_A 249 CKIMSKY-YTFM-KPYMEQALYALTIATMK--SPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKD 324 (861)
T ss_dssp HHHHHHH-GGGC-HHHHHHTHHHHHHHHTT--CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHH
T ss_pred HHHHHHH-HHHH-HHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHH
Confidence 9999988 7777 67787 89998888888 788999999999999887653210 0 00 012245
Q ss_pred HHHHHHhhhcC-------CcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHH
Q 006253 220 IMRVVCEATLS-------PEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEI 292 (653)
Q Consensus 220 il~~l~~~~~~-------~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 292 (653)
+++.++..+.+ +++.+|..+..+|..++...++ ..++.+++.+.+.+++.++.+|..++..++.+++..
T Consensus 325 il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~---~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~- 400 (861)
T 2bpt_A 325 VVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN---HILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGP- 400 (861)
T ss_dssp HHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSS-
T ss_pred HHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccH---hHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCC-
Confidence 77777766643 3467999999999999988764 345678888888888889999999999888887521
Q ss_pred hhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcC-----CCchhc
Q 006253 293 DILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVG-----DDIVPL 367 (653)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~-----~~~~~~ 367 (653)
....+.++++.++|.++..+.+ ..+.+|..+..+++.++...+ ..+++.
T Consensus 401 -----------------~~~~~~~~l~~il~~l~~~l~d---------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 454 (861)
T 2bpt_A 401 -----------------DKVQRTYYVHQALPSILNLMND---------QSLQVKETTAWCIGRIADSVAESIDPQQHLPG 454 (861)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHHGGGC---------SCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHH
T ss_pred -----------------CHHHHHHHHHHHHHHHHHHcCC---------CcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHH
Confidence 1134566777888888887651 236899999999999998764 456788
Q ss_pred hHHHHHhhhcCcchhhHHHHHHHHHHhhcCCC---CCcchHHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHhhhc
Q 006253 368 VMPFVEENITKQEWRQREAATYAFGSILEGPS---PEKLVPLVNIALNFMLTALMQ--DPNNHVKDTTAWTLGRMFEFLH 442 (653)
Q Consensus 368 l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~---~~~~~~~l~~l~~~ll~~l~~--d~~~~vr~~a~~~l~~~~~~~~ 442 (653)
+++.+...+.++ +.+|.+++++++.++++++ +..+.+|++.+++.++..+ + |.++.+|.+++.+++.++...+
T Consensus 455 ~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l-~~~d~~~~vr~~a~~al~~l~~~~~ 532 (861)
T 2bpt_A 455 VVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAA-NRIDNEFNARASAFSALTTMVEYAT 532 (861)
T ss_dssp HHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHH-TCSCCGGGHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH-hCcCcchHHHHHHHHHHHHHHHHcc
Confidence 888888888776 8999999999999988653 3567899999999999999 7 4558999999999999999875
Q ss_pred cCCCCccccCccchHHHHHHHHHhccc----------------hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHH
Q 006253 443 GSTLETPIINQGNCQQIISVLLQSMKD----------------VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIV 506 (653)
Q Consensus 443 ~~~~~~~~~~~~~~~~il~~l~~~l~d----------------~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~ 506 (653)
. ...+++..++|.+++.+.+ ...++..++.++..++..++. .+.||++.++
T Consensus 533 ~-------~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~------~~~~~~~~l~ 599 (861)
T 2bpt_A 533 D-------TVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPS------SVEPVADMLM 599 (861)
T ss_dssp G-------GGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGG------GTGGGHHHHH
T ss_pred h-------hhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhh------hhHHHHHHHH
Confidence 3 2456788888887776641 246788999999999998753 5889999999
Q ss_pred HHHHHhccccccchh-chHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHhHH
Q 006253 507 QALLTVTHREDAGES-RLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCL 585 (653)
Q Consensus 507 ~~L~~~l~~~~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~i 585 (653)
+.++..++..+ . .+|..++.+++.++...|..+.||+..++|.+++.++. . +. .+|..++.++
T Consensus 600 ~~l~~~l~~~~---~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~--------~-~~----~vr~~a~~~l 663 (861)
T 2bpt_A 600 GLFFRLLEKKD---SAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQ--------V-DS----PVSITAVGFI 663 (861)
T ss_dssp HHHHHHHHSTT---GGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHC--------T-TS----HHHHHHHHHH
T ss_pred HHHHHHHccCC---CCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc--------c-cH----HHHHHHHHHH
Confidence 99999998664 3 78999999999999999999999999999999888842 1 11 3566789999
Q ss_pred HHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccC--cchhhhHHHHHHHHHHHhccCCccc-hhhhcC
Q 006253 586 QVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRS--ATAHEEAMLAIGALAYATGLWRIRY-CLIVMG 652 (653)
Q Consensus 586 ~~i~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~--~~~~e~~~~~~~~l~~~~~~~f~~y-~~i~~~ 652 (653)
+.++..+|.. +.||++.+++.+++.+...+ .++|+.++.++|.++..+|..|.|| +.++|.
T Consensus 664 ~~l~~~~~~~------~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~ 727 (861)
T 2bpt_A 664 ADISNSLEED------FRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMAL 727 (861)
T ss_dssp HHHHHHTGGG------GHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHH
T ss_pred HHHHHHhchh------ccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 9999999987 99999999999999998754 7899999999999999999999999 777764
No 14
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=4.4e-33 Score=314.18 Aligned_cols=566 Identities=15% Similarity=0.164 Sum_probs=441.2
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHhh----CcchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhcc
Q 006253 8 ILLNAQSVDGTVRKQAEESLKQYQEQ----NLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWL 83 (653)
Q Consensus 8 ll~~~~s~d~~~r~~A~~~L~~~~~~----~~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~ 83 (653)
+++.+.++++.+|+++-..+..+... .+|+++..|.+.+.+ .+..+|..|...|+...+....... . .
T Consensus 95 ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~--~~~~~r~~al~~L~~i~~~~~~~~~----~--~ 166 (852)
T 4fdd_A 95 CLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDS--EDYNTCEGAFGALQKICEDSAEILD----S--D 166 (852)
T ss_dssp HHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSC--SSHHHHHHHHHHHHHHHHHHTTHHH----H--C
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHhHHHhc----h--h
Confidence 44556678899999999999887654 478899999998875 3678999999999887764321100 0 0
Q ss_pred CCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcC--CCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhh
Q 006253 84 SLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELP--HKQWPELIGALLSNIHQLPPHTKQATLETLGYICEE 161 (653)
Q Consensus 84 ~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~--~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~ 161 (653)
.+ ......+.+.+++++.++++.+|..++.+++.++..... ...++++++.+.+.++++++.+|..++.+|..+++.
T Consensus 167 ~~-~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~ 245 (852)
T 4fdd_A 167 VL-DRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEV 245 (852)
T ss_dssp SS-SSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred hh-cchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Confidence 11 122456788889999999999999999999877754211 024578999999999999999999999999999998
Q ss_pred hcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHh--hhhhcCChhHHHHHHHHHHhhh-----------
Q 006253 162 VSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGF--AQANFSNDMERDYIMRVVCEAT----------- 228 (653)
Q Consensus 162 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~--~~~~~~~~~~~~~il~~l~~~~----------- 228 (653)
. ++.+ .+++..+++.+...+. +.++.+|..|++++..+++. ...... .+...+++.+...+
T Consensus 246 ~-~~~~-~~~l~~l~~~l~~~~~--~~~~~vr~~a~e~l~~l~~~~~~~~~~~--~~~~~l~p~ll~~l~~~e~d~~~~~ 319 (852)
T 4fdd_A 246 R-MDRL-LPHMHNIVEYMLQRTQ--DQDENVALEACEFWLTLAEQPICKDVLV--RHLPKLIPVLVNGMKYSDIDIILLK 319 (852)
T ss_dssp C-HHHH-GGGHHHHHHHHHHHHT--CSSHHHHHHHHHHHHHHTTSTTHHHHHT--TTHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred C-HHHH-HHHHHHHHHHHHHHcc--CCcHHHHHHHHHHHHHHhcchhHHHHHH--HHHHHHHHHHHHHcCCcHhHHHHhc
Confidence 7 7777 6788899999999888 78899999999998886642 111111 12346677776655
Q ss_pred cC-----------CcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhh
Q 006253 229 LS-----------PEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEE 297 (653)
Q Consensus 229 ~~-----------~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 297 (653)
.+ .++.+|+.+..++..++...++. .++.+++.+...+.+.++.+|..|+..++.+++.
T Consensus 320 ~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~------- 389 (852)
T 4fdd_A 320 GDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LLPHILPLLKELLFHHEWVVKESGILVLGAIAEG------- 389 (852)
T ss_dssp C------------CCCCHHHHHHHHHHHHHHHHGGG---GHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTT-------
T ss_pred CCcccccccccccccchHHHHHHHHHHHHHHhccHH---HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc-------
Confidence 23 23467999999999999887753 4567888888888889999999999999998863
Q ss_pred cCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcC----CCchhchHHHHH
Q 006253 298 YGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVG----DDIVPLVMPFVE 373 (653)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~----~~~~~~l~~~l~ 373 (653)
+...+.++++.++|.++..+. |..+.+|..|..+++.++...+ ..+++.+++.+.
T Consensus 390 ------------~~~~~~~~l~~~l~~l~~~l~---------d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~ 448 (852)
T 4fdd_A 390 ------------CMQGMIPYLPELIPHLIQCLS---------DKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELL 448 (852)
T ss_dssp ------------THHHHGGGHHHHHHHHHHHTT---------CSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHH
T ss_pred ------------chHHHHHHHHHHHHHHHHHcC---------CCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 223455677888888888774 2347899999999999998763 356778888888
Q ss_pred hhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCc
Q 006253 374 ENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQ 453 (653)
Q Consensus 374 ~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~ 453 (653)
+.+.++++.+|.+|+.+++.+++.++ ..+.+|++.+++.++..+ ++.+......+..+++.++...+.. ....
T Consensus 449 ~~L~d~~~~vr~~a~~aL~~l~~~~~-~~l~~~l~~ll~~L~~~l-~~~~~~~~~~~~~ai~~l~~~~~~~-----~~~~ 521 (852)
T 4fdd_A 449 KRILDSNKRVQEAACSAFATLEEEAC-TELVPYLAYILDTLVFAF-SKYQHKNLLILYDAIGTLADSVGHH-----LNKP 521 (852)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHHG-GGGGGGHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHGGG-----GCCH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhh-HhhHhHHHHHHHHHHHHH-HHhChHHHHHHHHHHHHHHHHhhhh-----hccH
Confidence 88888999999999999999998774 558899999999999999 7666667777888899988877532 1235
Q ss_pred cchHHHHHHHHHh---ccc-hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhcccc-------------
Q 006253 454 GNCQQIISVLLQS---MKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHRE------------- 516 (653)
Q Consensus 454 ~~~~~il~~l~~~---l~d-~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~------------- 516 (653)
+|++.++|.+++. +.+ ++.++ .++.++..++..++ ..+.||++.+++.+++.+...
T Consensus 522 ~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g------~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~ 594 (852)
T 4fdd_A 522 EYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQ------SGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQ 594 (852)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHG------GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHh------HhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc
Confidence 6999999999854 344 45564 78899999998875 358899999999887776532
Q ss_pred -ccchhchHHHHHHHHHHHHHhcccccHHHH--HHHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHhHHHHHHHHhC
Q 006253 517 -DAGESRLRTAAYETLNEVVRCSTDETAPMV--MQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLG 593 (653)
Q Consensus 517 -~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~ 593 (653)
+..+..++..++++++.+++..|..+.||+ ..+++.+++.+.+ .. ..+|..++.+++.++..++
T Consensus 595 ~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~---------~~----~~vr~~a~~~l~~l~~~~~ 661 (852)
T 4fdd_A 595 YEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQD---------KM----PEVRQSSFALLGDLTKACF 661 (852)
T ss_dssp SCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTC---------SS----HHHHHHHHHHHHHHHHHCG
T ss_pred cCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCC---------CC----hhHHHHHHHHHHHHHHHhh
Confidence 011345778899999999999999999998 6777777665542 11 1467778999999999999
Q ss_pred CCcchhhHhhHhHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHhccCCccc-hhhhcC
Q 006253 594 SSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGLWRIRY-CLIVMG 652 (653)
Q Consensus 594 ~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~e~~~~~~~~l~~~~~~~f~~y-~~i~~~ 652 (653)
.. +.+|++.+++.+.+.++.++.++|..+..++|.++..+|.+|.|| +.+++.
T Consensus 662 ~~------~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~ 715 (852)
T 4fdd_A 662 QH------VKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQ 715 (852)
T ss_dssp GG------TGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHH
T ss_pred HH------HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHH
Confidence 88 999999999999999987777899999999999999999999999 666654
No 15
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=6.6e-32 Score=292.91 Aligned_cols=534 Identities=11% Similarity=0.054 Sum_probs=412.3
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHhh-Cc----chHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHh
Q 006253 4 EVTQILLNAQSVDGTVRKQAEESLKQYQEQ-NL----PGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFEL 78 (653)
Q Consensus 4 ~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~-~~----~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~ 78 (653)
.+..++..+.++|+.+|..|.+.|.++... .+ ++.+..|.... +.++++|..++..|+++.....
T Consensus 11 ~i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~---d~~~~vr~~~~~~L~~~~~~~~------- 80 (588)
T 1b3u_A 11 PIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI---YDEDEVLLALAEQLGTFTTLVG------- 80 (588)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTC---CCCHHHHHHHHHHHTTCSGGGT-------
T ss_pred cHHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHHhccC-------
Confidence 578899999999999999999999876543 22 23444443332 3467999999999987665321
Q ss_pred hhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHH
Q 006253 79 VQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYI 158 (653)
Q Consensus 79 ~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l 158 (653)
.++....+...|.+.+.++++.+|..++.+++.++....+...++.+++.+.+...++++..|..++.+++.+
T Consensus 81 -------~~~~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~ 153 (588)
T 1b3u_A 81 -------GPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVC 153 (588)
T ss_dssp -------SGGGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHH
T ss_pred -------cHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 1122234555666667788899999999999999986533224567888888888888899999999999998
Q ss_pred HhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHH
Q 006253 159 CEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQA 238 (653)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~ 238 (653)
.... +. .....++|.+.+.+. |+++.||..|+++++.++...... .....+++.+...++++++.+|..
T Consensus 154 ~~~~-~~----~~~~~l~~~l~~l~~--d~~~~VR~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~~~d~~~~vr~~ 222 (588)
T 1b3u_A 154 YPRV-SS----AVKAELRQYFRNLCS--DDTPMVRRAAASKLGEFAKVLELD----NVKSEIIPMFSNLASDEQDSVRLL 222 (588)
T ss_dssp TTTS-CH----HHHHHHHHHHHHHHT--CSCHHHHHHHHHHHHHHHHTSCHH----HHHHTHHHHHHHHHTCSCHHHHTT
T ss_pred HHhc-CH----HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHhcHH----hHHHHHHHHHHHHhcCCcHHHHHH
Confidence 7766 32 345678888888888 889999999999999988765321 223568888888888999999999
Q ss_pred HHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhh
Q 006253 239 AFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHAL 318 (653)
Q Consensus 239 ~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 318 (653)
++.+|..++...+. ..+.+.++|.+.+..++.++.+|..+.+.++.++.... . ..+.
T Consensus 223 a~~~l~~l~~~~~~--~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~-----------------~----~~~~ 279 (588)
T 1b3u_A 223 AVEACVNIAQLLPQ--EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVG-----------------P----EITK 279 (588)
T ss_dssp HHHHHHHHHHHSCH--HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC-----------------H----HHHH
T ss_pred HHHHHHHHHHhCCH--HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhC-----------------c----ccch
Confidence 99999999887553 23445678888888888899999999999998886420 0 1123
Q ss_pred hhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCC-----chhchHHHHHhhhcCcchhhHHHHHHHHHH
Q 006253 319 PVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDD-----IVPLVMPFVEENITKQEWRQREAATYAFGS 393 (653)
Q Consensus 319 ~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~-----~~~~l~~~l~~~l~~~~~~~r~aal~~l~~ 393 (653)
+.++|.+...+. |++|.+|..|..+|+.++...+.. +.+.++|.+...+.|++|.+|.+++.+++.
T Consensus 280 ~~l~~~l~~~l~---------d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~ 350 (588)
T 1b3u_A 280 TDLVPAFQNLMK---------DCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMG 350 (588)
T ss_dssp HTHHHHHHHHHT---------CSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGG
T ss_pred hHHHHHHHHHhC---------CCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 456777777664 123789999999999999988764 578899999999999999999999999999
Q ss_pred hhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc-hhh
Q 006253 394 ILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPN 472 (653)
Q Consensus 394 i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~ 472 (653)
++...+.. ...+.++|.+...+ +|+++.||.+++.+++.+....+ ...+.+.++|.+...+.| +.+
T Consensus 351 l~~~~~~~---~~~~~l~p~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~~---------~~~~~~~~lp~l~~~~~d~~~~ 417 (588)
T 1b3u_A 351 LSPILGKD---NTIEHLLPLFLAQL-KDECPEVRLNIISNLDCVNEVIG---------IRQLSQSLLPAIVELAEDAKWR 417 (588)
T ss_dssp GHHHHCHH---HHHHHTHHHHHHHH-TCSCHHHHHHHHTTCHHHHHHSC---------HHHHHHHHHHHHHHHHTCSSHH
T ss_pred HHHHhhHh---HHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHHHHhcC---------HHHHHHHHHHHHHHHhcCCCch
Confidence 98765321 23567889999999 99999999999999999998764 234567889998888877 689
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhcccccHHHHHHHHHH
Q 006253 473 VAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPL 552 (653)
Q Consensus 473 v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ 552 (653)
+|..++.++..+++.++. .. +.+.+++.+.+.+.+.+ ..+|..++.+++.++...|.. .++..++|.
T Consensus 418 vr~~~~~~l~~l~~~~~~-----~~---~~~~l~~~l~~~l~d~~---~~Vr~~a~~~l~~l~~~~~~~--~~~~~llp~ 484 (588)
T 1b3u_A 418 VRLAIIEYMPLLAGQLGV-----EF---FDEKLNSLCMAWLVDHV---YAIREAATSNLKKLVEKFGKE--WAHATIIPK 484 (588)
T ss_dssp HHHHHHHHHHHHHHHHCG-----GG---CCHHHHHHHHHGGGCSS---HHHHHHHHHHHHHHHHHHCHH--HHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHcCH-----HH---HHHHHHHHHHHHhcCCc---HHHHHHHHHHHHHHHHHhCch--hHHHHHHHH
Confidence 999999999999987753 22 23567888888887664 679999999999999998864 245666666
Q ss_pred HHHHHHHHHHhhcCChhHHHhHHHHHHHHHhHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccCcchhhhHHHHH
Q 006253 553 IMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAI 632 (653)
Q Consensus 553 l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~e~~~~~~ 632 (653)
+...+. +.+ ..+|..++.+++.++..+|.. .|.+.+++.+.+.+++.++.+|..++.++
T Consensus 485 l~~~~~---------~~~----~~~R~~a~~~l~~l~~~~~~~--------~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l 543 (588)
T 1b3u_A 485 VLAMSG---------DPN----YLHRMTTLFCINVLSEVCGQD--------ITTKHMLPTVLRMAGDPVANVRFNVAKSL 543 (588)
T ss_dssp HHHTTT---------CSC----HHHHHHHHHHHHHHHHHHHHH--------HHHHHTHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred HHHHhh---------CCC----HHHHHHHHHHHHHHHHhcCHH--------HHHHHHHHHHHhhCCCCCchHHHHHHHHH
Confidence 653221 111 146778999999999998754 47888999999999988889999999999
Q ss_pred HHHHHHhccCCc
Q 006253 633 GALAYATGLWRI 644 (653)
Q Consensus 633 ~~l~~~~~~~f~ 644 (653)
+.++..+|..+.
T Consensus 544 ~~l~~~~~~~~~ 555 (588)
T 1b3u_A 544 QKIGPILDNSTL 555 (588)
T ss_dssp HHHGGGSCHHHH
T ss_pred HHHHHHhchhhh
Confidence 999999988764
No 16
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=6.2e-30 Score=290.88 Aligned_cols=566 Identities=11% Similarity=0.149 Sum_probs=433.1
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHh-----hCcchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhc
Q 006253 8 ILLNAQSVDGTVRKQAEESLKQYQE-----QNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRW 82 (653)
Q Consensus 8 ll~~~~s~d~~~r~~A~~~L~~~~~-----~~~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~ 82 (653)
+++.+.++++.+ .++-+.+..+.. ..+|+++..+.+.+.+++.++.+|..|+..|...+..... ..+
T Consensus 95 ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~-------~~~ 166 (876)
T 1qgr_A 95 VLHTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP-------EQL 166 (876)
T ss_dssp HHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH-------HHH
T ss_pred HHHHhCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCH-------hhH
Confidence 566666777677 777777765433 3578999999999886322688999999999887753210 001
Q ss_pred cCCChHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHHHhhhcC---CCCC-chHHHHHHHhhcCCChhHHHHHHHHHH
Q 006253 83 LSLDSSVKAQIKSFILKTLSSP--AHDARSTASQVVAKVAGIELP---HKQW-PELIGALLSNIHQLPPHTKQATLETLG 156 (653)
Q Consensus 83 ~~l~~~~~~~i~~~ll~~l~~~--~~~vr~~~~~~l~~ia~~~~~---~~~~-~~l~~~l~~~l~~~~~~~~~~~l~~l~ 156 (653)
......+.+.+.+.+.++ +..+|..+..+++.++....+ ...| +.+++.+.+.+.++++.+|..++.+|.
T Consensus 167 ----~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~ 242 (876)
T 1qgr_A 167 ----QDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLV 242 (876)
T ss_dssp ----GGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred ----HhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 223456777788888887 589999999999998864211 1112 237888888888889999999999999
Q ss_pred HHHhhhcccccchhhHh-HHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhh----------------hcCChh---H
Q 006253 157 YICEEVSSDAVEQDHVN-KILTAVVQGMNASESNNDVRLAATRALYNALGFAQA----------------NFSNDM---E 216 (653)
Q Consensus 157 ~l~~~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~----------------~~~~~~---~ 216 (653)
.+++.. +..+ .+++. .+++.+...+. +.++.+|..|++.+..++..... ...... .
T Consensus 243 ~l~~~~-~~~~-~~~~~~~l~~~~~~~~~--~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (876)
T 1qgr_A 243 KIMSLY-YQYM-ETYMGPALFAITIEAMK--SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGA 318 (876)
T ss_dssp HHHHHS-GGGC-HHHHTTTHHHHHHHHHT--CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHH
T ss_pred HHHHHh-HHHH-HHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHH
Confidence 999987 6767 67787 89999998887 78899999999999888764310 000000 1
Q ss_pred HHHHHHHHHhhhc-------CCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhH
Q 006253 217 RDYIMRVVCEATL-------SPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCD 289 (653)
Q Consensus 217 ~~~il~~l~~~~~-------~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 289 (653)
...+++.++..+. ++++.+|..+..++..++...++ ..++.+++.+...+.+.++.+|..++..++.+++
T Consensus 319 ~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~ 395 (876)
T 1qgr_A 319 LQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILE 395 (876)
T ss_dssp HHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSS
T ss_pred HHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH---hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHc
Confidence 2456666666553 34678999999999999988774 3467788888888888999999999998888875
Q ss_pred HHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCC-----Cc
Q 006253 290 EEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGD-----DI 364 (653)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~-----~~ 364 (653)
.. ....+.++++.++|.++..+. +..+.+|..|..+++.++...+. ..
T Consensus 396 ~~------------------~~~~~~~~~~~~l~~l~~~l~---------d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 448 (876)
T 1qgr_A 396 GP------------------EPSQLKPLVIQAMPTLIELMK---------DPSVVVRDTAAWTVGRICELLPEAAINDVY 448 (876)
T ss_dssp SS------------------CHHHHHHHHHHHHHHHHHHHT---------CSSHHHHHHHHHHHHHHHHHCGGGTSSTTT
T ss_pred CC------------------CHHHHHHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHHHHhCchhcccHHH
Confidence 21 112345667788888888774 12368999999999999998753 56
Q ss_pred hhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCC-------------CCcchHHHHHHHHHHHHHhcCCC---chHHHH
Q 006253 365 VPLVMPFVEENITKQEWRQREAATYAFGSILEGPS-------------PEKLVPLVNIALNFMLTALMQDP---NNHVKD 428 (653)
Q Consensus 365 ~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~-------------~~~~~~~l~~l~~~ll~~l~~d~---~~~vr~ 428 (653)
++.+++.+...+.++ +.+|..++++++.++..+. ...+.+|++.++|.++..+ .+. +..+|.
T Consensus 449 l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l-~~~~~~~~~~r~ 526 (876)
T 1qgr_A 449 LAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETT-DRPDGHQNNLRS 526 (876)
T ss_dssp HHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHT-TSCSSCSTTHHH
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHH-hCcCcchhhHHH
Confidence 778888888888775 8899999999999886531 2447789999999999998 654 468999
Q ss_pred HHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc------------h----hhHHHHHHHHHHHHHhcccCCC
Q 006253 429 TTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD------------V----PNVAEKACGALYFLAQGFEDAI 492 (653)
Q Consensus 429 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d------------~----~~v~~~a~~al~~~~~~~~~~~ 492 (653)
.+..+++.++...+. ...+++..+++.++..+.+ + +.++..++.++..++..++.
T Consensus 527 ~~~~~l~~l~~~~~~-------~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~-- 597 (876)
T 1qgr_A 527 SAYESLMEIVKNSAK-------DCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQH-- 597 (876)
T ss_dssp HHHHHHHHHHHTCCS-------TTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCH--
T ss_pred HHHHHHHHHHHHCch-------hhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhCh--
Confidence 999999999998763 2566888888888776542 1 45788899999999987640
Q ss_pred CCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhhcCChhHHH
Q 006253 493 SPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDERE 572 (653)
Q Consensus 493 ~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~ 572 (653)
..+.||++.+++.+++.+..... ...++..++.+++.++...|..+.||+..++|.+...+... ++.
T Consensus 598 ---~~~~~~~~~l~~~l~~~l~~~~~-~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~--------~~~- 664 (876)
T 1qgr_A 598 ---QDALQISDVVMASLLRMFQSTAG-SGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNY--------AEY- 664 (876)
T ss_dssp ---HHHHTTHHHHHHHHHHHC------CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHC--------TTH-
T ss_pred ---hhhhHHHHHHHHHHHHHHHhccC-CCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCc--------chH-
Confidence 34789999999999999986631 13578899999999999999999999999999888877651 121
Q ss_pred hHHHHHHHHHhHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhc--cCcchhhhHHHHHHHHHHHhccCCccc-hhh
Q 006253 573 KQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAI--RSATAHEEAMLAIGALAYATGLWRIRY-CLI 649 (653)
Q Consensus 573 ~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~--~~~~~~e~~~~~~~~l~~~~~~~f~~y-~~i 649 (653)
.+|..++.+++.++..+|.. +.||++.+++.+++.++. .+.++|..++.++|.++..+|.+|.|| |.+
T Consensus 665 ---~vr~~a~~~l~~l~~~~~~~------~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~ 735 (876)
T 1qgr_A 665 ---QVCLAAVGLVGDLCRALQSN------IIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVV 735 (876)
T ss_dssp ---HHHHHHHHHHHHHHHHHGGG------GHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHh------hhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHH
Confidence 46777999999999999987 999999999999999987 356799999999999999999999999 887
Q ss_pred hcC
Q 006253 650 VMG 652 (653)
Q Consensus 650 ~~~ 652 (653)
+|.
T Consensus 736 ~~~ 738 (876)
T 1qgr_A 736 LNT 738 (876)
T ss_dssp HHH
T ss_pred HHH
Confidence 774
No 17
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=1.7e-30 Score=304.53 Aligned_cols=537 Identities=14% Similarity=0.142 Sum_probs=415.2
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 006253 39 LLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAK 118 (653)
Q Consensus 39 ~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ 118 (653)
+..+++-+. +.++.+|.+|..-|.+.++.. ...++++....+...+++.+.++++.+|..++.+++.
T Consensus 8 l~~lL~~l~--s~d~~~R~~A~~~L~~~l~~~-----------~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~ 74 (1230)
T 1u6g_C 8 ISNLLEKMT--SSDKDFRFMATNDLMTELQKD-----------SIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGP 74 (1230)
T ss_dssp HHHHHHHTT--CSSHHHHHHHHHHHHHHTSSS-----------CCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHhcC--CCCHhHHHHHHHHHHHHHccc-----------ccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 444555555 458999999999998877642 1235666677888999999999999999999999999
Q ss_pred HHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhccc-----ccchhhHhHHHHHHHhcccCCCCCHHHH
Q 006253 119 VAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSD-----AVEQDHVNKILTAVVQGMNASESNNDVR 193 (653)
Q Consensus 119 ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~-----~~~~~~~~~l~~~l~~~l~~~~~~~~vr 193 (653)
++....+ ..++.+++.++..+.++++.+|.++..+++.++..+.+. .. ..+...++|.+...+.+ ++++.+|
T Consensus 75 l~~~~~~-~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~-~~~~~~llp~L~~~l~~-~~~~~~~ 151 (1230)
T 1u6g_C 75 LVSKVKE-YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALA-ANVCKKITGRLTSAIAK-QEDVSVQ 151 (1230)
T ss_dssp HHTTSCH-HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTH-HHHHHHHHHHHHHHHSC-CSCHHHH
T ss_pred HHHhCCH-HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchH-HHHHHHHHHHHHHHHcC-CCchHHH
Confidence 9986533 467889999999999999999999999999999887432 12 35678999999999983 3778999
Q ss_pred HHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhcC-
Q 006253 194 LAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVRED- 272 (653)
Q Consensus 194 ~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~- 272 (653)
..|+.++..++......+. .+.+.+++.+...+.++++.+|..++.++..++...++.+ ++.+++.+++.+.+.
T Consensus 152 ~~al~~l~~~~~~~~~~l~--~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~---~~~~l~~l~~~L~~~~ 226 (1230)
T 1u6g_C 152 LEALDIMADMLSRQGGLLV--NFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV---FVDLIEHLLSELSKND 226 (1230)
T ss_dssp HHHHHHHHHHHHHTCSSCT--TTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhHhHHH--HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHHhccCC
Confidence 9999999998875443333 2447889999999988899999999999999988665432 334555555555443
Q ss_pred ChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHH
Q 006253 273 EEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTC 352 (653)
Q Consensus 273 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~ 352 (653)
++.+|..+++.|+.++... ...+.++++.++|.++..+.+ + +..+|..+..+
T Consensus 227 ~~~~r~~a~~~l~~l~~~~-------------------~~~~~~~l~~l~~~ll~~l~d--~-------~~~vR~~a~~~ 278 (1230)
T 1u6g_C 227 SMSTTRTYIQCIAAISRQA-------------------GHRIGEYLEKIIPLVVKFCNV--D-------DDELREYCIQA 278 (1230)
T ss_dssp SSCSCTTHHHHHHHHHHHS-------------------SGGGTTSCTTHHHHHHHHHSS--C-------CTTTHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHh-------------------HHHHHHHHHHHHHHHHHHhcC--C-------CHHHHHHHHHH
Confidence 3567888899999888642 123456778899999887751 1 13589999999
Q ss_pred HHHHHhhcCCC---chhchHHHHHhhhc-------------------------------------CcchhhHHHHHHHHH
Q 006253 353 LGLVARTVGDD---IVPLVMPFVEENIT-------------------------------------KQEWRQREAATYAFG 392 (653)
Q Consensus 353 L~~l~~~~~~~---~~~~l~~~l~~~l~-------------------------------------~~~~~~r~aal~~l~ 392 (653)
++.++..+++. +++.+++.+.+.+. +..|++|.+|+.+++
T Consensus 279 l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~ 358 (1230)
T 1u6g_C 279 FESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLD 358 (1230)
T ss_dssp HHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHH
T ss_pred HHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHH
Confidence 99999998876 45666666654432 124889999999999
Q ss_pred HhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCC-----------c-cccCccchHHHH
Q 006253 393 SILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLE-----------T-PIINQGNCQQII 460 (653)
Q Consensus 393 ~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~-----------~-~~~~~~~~~~il 460 (653)
.++... ++.+.++++.++|.+...+ +|.++.||.+++.+++.+.......... + ......+++.++
T Consensus 359 ~l~~~~-~~~~~~~~~~l~~~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll 436 (1230)
T 1u6g_C 359 AVVSTR-HEMLPEFYKTVSPALISRF-KEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIV 436 (1230)
T ss_dssp HHHTTC-CTTHHHHHTTTHHHHHSTT-SCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHH
T ss_pred HHHHhc-hhHHHHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHH
Confidence 999854 4567889999999999999 9999999999999999988765320000 0 001235667778
Q ss_pred HHHHHhccc-hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhcc
Q 006253 461 SVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCST 539 (653)
Q Consensus 461 ~~l~~~l~d-~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~ 539 (653)
+.+.+.+.+ ++++|..++.++..++..+ +..+.+|++.+++.++..+.+... ...++..++.+++.++...|
T Consensus 437 ~~l~~~l~~~~~~vr~~~~~~L~~l~~~~------~~~l~~~l~~ll~~l~~~L~d~~~-~~~v~~~a~~~l~~~~~~~~ 509 (1230)
T 1u6g_C 437 KALHKQMKEKSVKTRQCCFNMLTELVNVL------PGALTQHIPVLVPGIIFSLNDKSS-SSNLKIDALSCLYVILCNHS 509 (1230)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHS------TTTTGGGHHHHHHHHHHHTTCSSS-CHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHHc------hhhhHHHHHHHHHHHHHHHcCCCC-cchHHHHHHHHHHHHHHhCC
Confidence 888887886 6889999999999999875 345789999999999999987642 24788899999999998777
Q ss_pred cc-cHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHhHHHHHHHHhCC-------CcchhhHhhHhHHHHHH
Q 006253 540 DE-TAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGS-------SEQTKYVFMQYADQMMG 611 (653)
Q Consensus 540 ~~-~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~-------~~~~~~~~~~~~~~i~~ 611 (653)
.+ +.||+..++|.++..+.+ . . ..++..++.+++.++..+|. . +.||.+.+++
T Consensus 510 ~~~~~~~l~~llp~L~~~l~d--------~-~----~~v~~~al~~l~~l~~~~~~~~~~~~~~------~~~~~~~ll~ 570 (1230)
T 1u6g_C 510 PQVFHPHVQALVPPVVACVGD--------P-F----YKITSEALLVTQQLVKVIRPLDQPSSFD------ATPYIKDLFT 570 (1230)
T ss_dssp GGGGHHHHTTTHHHHHHHHTC--------S-S----HHHHHHHHHHHHHHHHHHCCSSSCCCCC------CHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHcc--------c-c----hHHHHHHHHHHHHHHHHhcCcccccccc------hHHHHHHHHH
Confidence 55 899999999999875542 1 1 13555688999999999987 4 8999999999
Q ss_pred HHHHHH--hccCcchhhhHHHHHHHHHHHhccCCccc-hhhhcC
Q 006253 612 LFLRVF--AIRSATAHEEAMLAIGALAYATGLWRIRY-CLIVMG 652 (653)
Q Consensus 612 ~l~~~l--~~~~~~~~e~~~~~~~~l~~~~~~~f~~y-~~i~~~ 652 (653)
.++..+ .+.+.++|+.++.++|.++...|..+.+| |.++|.
T Consensus 571 ~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~ 614 (1230)
T 1u6g_C 571 CTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQI 614 (1230)
T ss_dssp HHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHH
Confidence 999999 55567899999999999999999999998 776653
No 18
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=4.8e-30 Score=278.28 Aligned_cols=530 Identities=13% Similarity=0.093 Sum_probs=402.5
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHhh-C----cchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHh
Q 006253 4 EVTQILLNAQSVDGTVRKQAEESLKQYQEQ-N----LPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFEL 78 (653)
Q Consensus 4 ~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~-~----~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~ 78 (653)
++...|....+++.++|..+-+.|..+... . ...++..|...+. +.+..+|..|...+++.....
T Consensus 49 ~l~~~L~~~~d~~~~vr~~~~~~L~~~~~~~~~~~~~~~ll~~L~~l~~--~~~~~vR~~a~~~L~~l~~~~-------- 118 (588)
T 1b3u_A 49 ELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLAT--VEETVVRDKAVESLRAISHEH-------- 118 (588)
T ss_dssp THHHHHHHTCCCCHHHHHHHHHHHTTCSGGGTSGGGGGGGHHHHHHHTT--SSCHHHHHHHHHHHHHHHTTS--------
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHh--CchHHHHHHHHHHHHHHHHHC--------
Confidence 466777777788889999999998765432 1 1233433433333 357899999999999877532
Q ss_pred hhhccCCCh-HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHH
Q 006253 79 VQRWLSLDS-SVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGY 157 (653)
Q Consensus 79 ~~~~~~l~~-~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~ 157 (653)
++ ..+..+.+.+.+...+++..+|..++.+++.++.+..+ ..++++++.+.+.+.++++.+|..++.+++.
T Consensus 119 -------~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~-~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~ 190 (588)
T 1b3u_A 119 -------SPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSS-AVKAELRQYFRNLCSDDTPMVRRAAASKLGE 190 (588)
T ss_dssp -------CHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCH-HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred -------CHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 22 22334555555566677789999999999999876532 3578899999999999999999999999999
Q ss_pred HHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHH
Q 006253 158 ICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQ 237 (653)
Q Consensus 158 l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~ 237 (653)
+++.. +. ......++|.+...++ |+++.+|..|+.++..+....+.. .....+++.+.....++++.+|.
T Consensus 191 l~~~~-~~---~~~~~~l~~~l~~~~~--d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~~~~~l~~~~~d~~~~vR~ 260 (588)
T 1b3u_A 191 FAKVL-EL---DNVKSEIIPMFSNLAS--DEQDSVRLLAVEACVNIAQLLPQE----DLEALVMPTLRQAAEDKSWRVRY 260 (588)
T ss_dssp HHHTS-CH---HHHHHTHHHHHHHHHT--CSCHHHHTTHHHHHHHHHHHSCHH----HHHHHTHHHHHHHHTCSSHHHHH
T ss_pred HHHHh-cH---HhHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHhCCHH----HHHHHHHHHHHHHccCCCHHHHH
Confidence 99877 32 2345678888888888 788999999999999987754321 22356788888888889999999
Q ss_pred HHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhh
Q 006253 238 AAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHA 317 (653)
Q Consensus 238 ~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (653)
.++++|+.++...+.. .+.+.+++.+.+.+++.++++|..+...+..++... . .......+
T Consensus 261 ~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~-------~----------~~~~~~~~ 321 (588)
T 1b3u_A 261 MVADKFTELQKAVGPE--ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENL-------S----------ADCRENVI 321 (588)
T ss_dssp HHHHTHHHHHHHHCHH--HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTS-------C----------TTTHHHHH
T ss_pred HHHHHHHHHHHHhCcc--cchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHh-------C----------hhhhhhHH
Confidence 9999999998865432 245678888888999999999999999888887631 0 00011244
Q ss_pred hhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCC-chhchHHHHHhhhcCcchhhHHHHHHHHHHhhc
Q 006253 318 LPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDD-IVPLVMPFVEENITKQEWRQREAATYAFGSILE 396 (653)
Q Consensus 318 l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~-~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~ 396 (653)
++.++|.+...+. +.+|.+|..+..+|+.++..+|+. ..+.++|.+...+.|+++.+|.+++.+++.+..
T Consensus 322 ~~~l~p~l~~~l~---------d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~ 392 (588)
T 1b3u_A 322 MSQILPCIKELVS---------DANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNE 392 (588)
T ss_dssp HHTHHHHHHHHHT---------CSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhc---------CCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Confidence 5667777766543 235899999999999999988754 357888988899999999999999999999887
Q ss_pred CCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc-hhhHHH
Q 006253 397 GPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAE 475 (653)
Q Consensus 397 ~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~ 475 (653)
..+. ..+.+.++|.+...+ +|+++++|.+++.+++.++..++. ..+.+.++|.+...+.| +..||.
T Consensus 393 ~~~~---~~~~~~~lp~l~~~~-~d~~~~vr~~~~~~l~~l~~~~~~---------~~~~~~l~~~l~~~l~d~~~~Vr~ 459 (588)
T 1b3u_A 393 VIGI---RQLSQSLLPAIVELA-EDAKWRVRLAIIEYMPLLAGQLGV---------EFFDEKLNSLCMAWLVDHVYAIRE 459 (588)
T ss_dssp HSCH---HHHHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHHCG---------GGCCHHHHHHHHHGGGCSSHHHHH
T ss_pred hcCH---HHHHHHHHHHHHHHh-cCCCchHHHHHHHHHHHHHHHcCH---------HHHHHHHHHHHHHHhcCCcHHHHH
Confidence 6432 234567889998889 999999999999999999998762 23456789999999987 688999
Q ss_pred HHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Q 006253 476 KACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMM 555 (653)
Q Consensus 476 ~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~ 555 (653)
.|+.++..++..+++ ..+.+.+++.+.....+.+ ..+|..++.+++.++..+|.. .|...++|.+++
T Consensus 460 ~a~~~l~~l~~~~~~--------~~~~~~llp~l~~~~~~~~---~~~R~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~ 526 (588)
T 1b3u_A 460 AATSNLKKLVEKFGK--------EWAHATIIPKVLAMSGDPN---YLHRMTTLFCINVLSEVCGQD--ITTKHMLPTVLR 526 (588)
T ss_dssp HHHHHHHHHHHHHCH--------HHHHHHTHHHHHHTTTCSC---HHHHHHHHHHHHHHHHHHHHH--HHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHhCc--------hhHHHHHHHHHHHHhhCCC---HHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHh
Confidence 999999999988652 2356788888888776543 678999999999999988754 366777777766
Q ss_pred HHHHHHHhhcCChhHHHhHHHHHHHHHhHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccCcchhhhHHHHHHHH
Q 006253 556 ELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGAL 635 (653)
Q Consensus 556 ~l~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~e~~~~~~~~l 635 (653)
.+++ .++ .+|..++.+++.++..+|.. +. .+.+++.+.+.+++.+..+|+.+..+++.+
T Consensus 527 ~l~d---------~~~----~Vr~~a~~~l~~l~~~~~~~------~~--~~~~~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 527 MAGD---------PVA----NVRFNVAKSLQKIGPILDNS------TL--QSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp GGGC---------SCH----HHHHHHHHHHHHHGGGSCHH------HH--HHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred hCCC---------CCc----hHHHHHHHHHHHHHHHhchh------hh--HHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 5432 122 57888999999999888765 32 245666666667777889999999888865
Q ss_pred H
Q 006253 636 A 636 (653)
Q Consensus 636 ~ 636 (653)
.
T Consensus 586 ~ 586 (588)
T 1b3u_A 586 S 586 (588)
T ss_dssp T
T ss_pred h
Confidence 3
No 19
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.97 E-value=4.6e-29 Score=286.77 Aligned_cols=511 Identities=13% Similarity=0.166 Sum_probs=353.7
Q ss_pred ChhHHHHHHHHhcCC--ChHHHHHHHHHHHHHHhhCcchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHh
Q 006253 1 MSAEVTQILLNAQSV--DGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFEL 78 (653)
Q Consensus 1 m~~~l~~ll~~~~s~--d~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~ 78 (653)
|.+++.++++.+++| |++.|++|+++|++++++ |+++..+..++.+.+.+.++|++|+++|++.+.+
T Consensus 9 ~~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~--p~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~--------- 77 (1204)
T 3a6p_A 9 LCEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEK--CPICVPCGLRLAEKTQVAIVRHFGLQILEHVVKF--------- 77 (1204)
T ss_dssp HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH--CTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhC--chHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH---------
Confidence 345688999999998 678899999999999988 6566666666655567899999999999999974
Q ss_pred hhhccCCChHHHHHHHHHHHHhcCC-------CChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHH
Q 006253 79 VQRWLSLDSSVKAQIKSFILKTLSS-------PAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQAT 151 (653)
Q Consensus 79 ~~~~~~l~~~~~~~i~~~ll~~l~~-------~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~ 151 (653)
.|..++++.+..||+.+++.+.+ +++.||++++.+++.|+++++| +.||++++.+.+.+++ ++..++.+
T Consensus 78 --~W~~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p-~~Wp~ll~~L~~~~~~-~~~~~e~~ 153 (1204)
T 3a6p_A 78 --RWNGMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP-QHWPDMLIELDTLSKQ-GETQTELV 153 (1204)
T ss_dssp --SGGGSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHHHHHT-CHHHHHHH
T ss_pred --hcccCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHhcC-CHHHHHHH
Confidence 57789999999999999998753 3579999999999999999999 6999999999999876 66778999
Q ss_pred HHHHHHHHhhhc-ccccc-----------hhhHhHHHHHHHhcccCC-----------------CCCHHHHHHHHHHHHH
Q 006253 152 LETLGYICEEVS-SDAVE-----------QDHVNKILTAVVQGMNAS-----------------ESNNDVRLAATRALYN 202 (653)
Q Consensus 152 l~~l~~l~~~~~-~~~~~-----------~~~~~~l~~~l~~~l~~~-----------------~~~~~vr~~a~~~l~~ 202 (653)
+.+|..++++.. .+.+. ...+..+++.+.+.+... ..+..++..+++|+.+
T Consensus 154 L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~ 233 (1204)
T 3a6p_A 154 MFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAG 233 (1204)
T ss_dssp HHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHH
Confidence 999999998741 11110 122445666665555310 1234577788888887
Q ss_pred HHHhhhhhcCChhHHHHHHHHHHhhhc-----------------------------------------------------
Q 006253 203 ALGFAQANFSNDMERDYIMRVVCEATL----------------------------------------------------- 229 (653)
Q Consensus 203 ~~~~~~~~~~~~~~~~~il~~l~~~~~----------------------------------------------------- 229 (653)
++.|++-++.... .+.+++.++..+.
T Consensus 234 ~l~Wi~~~~i~~~-~~~ll~~l~~~l~~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~ 312 (1204)
T 3a6p_A 234 YIDWVSMSHITAE-NCKLLEILCLLLNEQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLV 312 (1204)
T ss_dssp TTTTSCHHHHHTT-TSHHHHHHHHGGGCTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCC
T ss_pred HHhccCHHHHHhc-cchHHHHHHHHcCCHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCc
Confidence 7766542110000 0112222222111
Q ss_pred CCcHHHHHHHHHHHHHHHHHhHHh--------hHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCC
Q 006253 230 SPEVKIRQAAFECLVAISSTYYEK--------LAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGD 301 (653)
Q Consensus 230 ~~~~~~~~~~~~~l~~l~~~~~~~--------~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 301 (653)
+.+.++++..++.+..+....... ..+.+..+++.++..+.+++.++...+++||..+.....
T Consensus 313 e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~--------- 383 (1204)
T 3a6p_A 313 EKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEI--------- 383 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTT---------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhccc---------
Confidence 112344444555554444322221 123455677777877778788888888889988775320
Q ss_pred CCCCCCCchhhHHHhhhhhhHHHH---HHHhhhccCCc----------cCCC-----ccccHhhhHHHHHHHHHhhcCCC
Q 006253 302 FSGDSDIPCFYFIKHALPVLVPLL---LETLLKQEEDQ----------DQDE-----GAWNIAMAGGTCLGLVARTVGDD 363 (653)
Q Consensus 302 ~~~~~~~~~~~~~~~~l~~l~~~l---~~~l~~~~ed~----------~~d~-----~~~~~r~~a~~~L~~l~~~~~~~ 363 (653)
........++++++++.+ +.++.+.++++ +|++ .-|+.|+...+.+..++...+..
T Consensus 384 ------~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~ 457 (1204)
T 3a6p_A 384 ------LSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKT 457 (1204)
T ss_dssp ------TTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred ------ccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 011134567788888888 55665543221 1111 13689999999999999988877
Q ss_pred chhchHHHHHhhhc-------------------------CcchhhHHHHHHHHHHhhcCCC----CCcch-HHHHHHHHH
Q 006253 364 IVPLVMPFVEENIT-------------------------KQEWRQREAATYAFGSILEGPS----PEKLV-PLVNIALNF 413 (653)
Q Consensus 364 ~~~~l~~~l~~~l~-------------------------~~~~~~r~aal~~l~~i~~~~~----~~~~~-~~l~~l~~~ 413 (653)
.++.+.+.+.+.+. ++.|...++....+.++.+++. ..... ..++.+++.
T Consensus 458 ~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ 537 (1204)
T 3a6p_A 458 SFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQM 537 (1204)
T ss_dssp HHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHH
Confidence 77666666643322 2457788888888877766541 11121 235555665
Q ss_pred HHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc-------------hhhHHHHHHHH
Q 006253 414 MLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-------------VPNVAEKACGA 480 (653)
Q Consensus 414 ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-------------~~~v~~~a~~a 480 (653)
++. + +..+|.+|.+++.++|.++.++.. ..+++.++++.++..+.+ ++++|.+||.+
T Consensus 538 ll~-~-~~~~p~l~~~~i~~l~~l~~~~~~--------~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~a 607 (1204)
T 3a6p_A 538 VLN-F-DTKDPLILSCVLTNVSALFPFVTY--------RPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSS 607 (1204)
T ss_dssp HHH-C-CCSCHHHHHHHHHHHHHHGGGGGT--------CGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHH
T ss_pred HHh-C-CCCChHHHHHHHHHHHHHHHHHhc--------CchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHH
Confidence 443 2 346889999999999999999863 568999999999988654 24799999999
Q ss_pred HHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccc-cchhchHHHHHHHHHHHHHhccc--ccHHHHHHHHHHHHHHH
Q 006253 481 LYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHRED-AGESRLRTAAYETLNEVVRCSTD--ETAPMVMQLVPLIMMEL 557 (653)
Q Consensus 481 l~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~-~~~~~~~~~~~~~l~~l~~~~~~--~~~~~~~~l~~~l~~~l 557 (653)
+..+++.+. ..+.||++.+.+.+..++.... .. ..-+...+++++.++...+. ....|+..+++++++.|
T Consensus 608 l~~L~~~~~------~~L~p~~~~i~~~~~~~l~~~~~l~-~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w 680 (1204)
T 3a6p_A 608 IIKMCRDYP------QLVLPNFDMLYNHVKQLLSNELLLT-QMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIW 680 (1204)
T ss_dssp HHHHHHHCH------HHHGGGHHHHHHHHHHHHHSTTTSC-HHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhh------HHHHHHHHHHHHHHHHHHhCccccc-HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999874 4589999999999988886443 21 23345788899888655443 23557999999999988
Q ss_pred HH
Q 006253 558 HQ 559 (653)
Q Consensus 558 ~~ 559 (653)
.+
T Consensus 681 ~~ 682 (1204)
T 3a6p_A 681 LS 682 (1204)
T ss_dssp SC
T ss_pred cc
Confidence 74
No 20
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.85 E-value=1.1e-16 Score=182.09 Aligned_cols=488 Identities=10% Similarity=0.089 Sum_probs=303.1
Q ss_pred CChHHHHHHHHHHHHHHhhCc----------c----hHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhh
Q 006253 15 VDGTVRKQAEESLKQYQEQNL----------P----GFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQ 80 (653)
Q Consensus 15 ~d~~~r~~A~~~L~~~~~~~~----------~----~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~ 80 (653)
.+.++|..|-..|+..-...| + .+=..+++.+.++ +..+|..++.++.......+ ..
T Consensus 49 ~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~~ll~~l~~~--~~~ir~~l~~~ia~ia~~d~-------p~ 119 (960)
T 1wa5_C 49 LPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMISL--PNNLQVQIGEAISSIADSDF-------PD 119 (960)
T ss_dssp SCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHHS-------TT
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHhhC-------cc
Confidence 357899999998875433211 1 1223466666653 58999999988888776432 14
Q ss_pred hccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcC--C--CCCch-------HHHHH-------HHhhcC
Q 006253 81 RWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELP--H--KQWPE-------LIGAL-------LSNIHQ 142 (653)
Q Consensus 81 ~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~--~--~~~~~-------l~~~l-------~~~l~~ 142 (653)
.|.. +.+.|++.+.+++...+..+..++..+.+..-. . ..+++ .++.+ .+.+.+
T Consensus 120 ~Wp~--------ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~ 191 (960)
T 1wa5_C 120 RWPT--------LLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITA 191 (960)
T ss_dssp TCTT--------HHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred chhH--------HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6754 567788888887777777888888888764311 0 01111 12222 222443
Q ss_pred CCh---hHH------HHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCC------C---C--C--HHHHHHHHHHH
Q 006253 143 LPP---HTK------QATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNAS------E---S--N--NDVRLAATRAL 200 (653)
Q Consensus 143 ~~~---~~~------~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~------~---~--~--~~vr~~a~~~l 200 (653)
+.. ..+ ..++.++..+...--++.+ ..++...++.+.+.+... | . + ..+|+.+++++
T Consensus 192 ~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l 270 (960)
T 1wa5_C 192 NENNKASLNILFDVLLVLIKLYYDFNCQDIPEFF-EDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELV 270 (960)
T ss_dssp CC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHH-HHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHH-HHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHH
Confidence 321 122 2244444433221113334 455666666666555320 1 1 1 35788999999
Q ss_pred HHHHHhhhhhcCChhHHHHHHHHHHhhhc-----CCcHHHHHHHHHHHHHHHHHhH--HhhH--HhHHHHH-HHHHHHhh
Q 006253 201 YNALGFAQANFSNDMERDYIMRVVCEATL-----SPEVKIRQAAFECLVAISSTYY--EKLA--PYIQDIF-NITAKAVR 270 (653)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~~~l~~l~~~~~--~~~~--~~l~~l~-~~~~~~~~ 270 (653)
..+.....+.+. .+...+++.....+. ..++.++..+++.|..+++... ..+. +++..++ +.++..+.
T Consensus 271 ~~l~~~~~~~f~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~ 348 (960)
T 1wa5_C 271 QLYTTRYEDVFG--PMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVT 348 (960)
T ss_dssp HHHHHHCHHHHH--HHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHS
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcC
Confidence 988765544332 223445554444332 3467888999999999876433 3343 7888888 67776653
Q ss_pred cC---------Ch--------------hHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHH
Q 006253 271 ED---------EE--------------PVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLE 327 (653)
Q Consensus 271 ~~---------~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 327 (653)
-. |+ ..|..|..++..++.. +-+..++.+++.+.+
T Consensus 349 ~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~----------------------~~~~v~~~~l~~i~~ 406 (960)
T 1wa5_C 349 LREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEK----------------------NEVLVTNIFLAHMKG 406 (960)
T ss_dssp CCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHH----------------------CHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHH----------------------cchhHHHHHHHHHHH
Confidence 11 11 1233333333333321 123444455555555
Q ss_pred HhhhccCCccCCCccccHhhhHHHHHHHHHhhc-----C-C------CchhchHHHHHhhhcCc---chhhHHHHHHHHH
Q 006253 328 TLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTV-----G-D------DIVPLVMPFVEENITKQ---EWRQREAATYAFG 392 (653)
Q Consensus 328 ~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~-----~-~------~~~~~l~~~l~~~l~~~---~~~~r~aal~~l~ 392 (653)
.+.....++ ..+|..|.+|..+++.++... | . .+.+.+...+...+.++ ++.+|.++++++|
T Consensus 407 ~l~~~~~~~---~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg 483 (960)
T 1wa5_C 407 FVDQYMSDP---SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIY 483 (960)
T ss_dssp HHHHHHC-------CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHH
T ss_pred HHHHhccCc---chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHH
Confidence 554322221 234999999999999998642 1 1 22222233333445666 7899999999999
Q ss_pred HhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhc-----cCCCCccccCccchHHHHHHHHHhc
Q 006253 393 SILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLH-----GSTLETPIINQGNCQQIISVLLQSM 467 (653)
Q Consensus 393 ~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~il~~l~~~l 467 (653)
.+++.. -..++..+++.++..+ .|++++||.+|++++.++++... ..... +....+|+..+++.|...+
T Consensus 484 ~~~~~~----~~~~l~~~l~~l~~~L-~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~-~~~l~p~l~~ll~~L~~ll 557 (960)
T 1wa5_C 484 TFRNQL----TKAQLIELMPILATFL-QTDEYVVYTYAAITIEKILTIRESNTSPAFIFH-KEDISNSTEILLKNLIALI 557 (960)
T ss_dssp HTGGGS----CHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSC-GGGTTTTHHHHHHHHHHHH
T ss_pred HHHhhC----CHHHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHHHhccccccccccccc-HHHhhhhHHHHHHHHHHHH
Confidence 998864 2357888999999999 99999999999999999998532 00000 1236789999999999887
Q ss_pred cch----hh--HHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhcccc--ccchhchHHHHHHHHHHHHHhcc
Q 006253 468 KDV----PN--VAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHRE--DAGESRLRTAAYETLNEVVRCST 539 (653)
Q Consensus 468 ~d~----~~--v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~--~~~~~~~~~~~~~~l~~l~~~~~ 539 (653)
... ++ ....+..++..++...+ +.+.||++.+++.|...+... +.++...+..++++++.+++..+
T Consensus 558 ~~~~~~~~~~~~~e~l~~al~~vv~~~~------~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~ 631 (960)
T 1wa5_C 558 LKHGSSPEKLAENEFLMRSIFRVLQTSE------DSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQ 631 (960)
T ss_dssp HTTCCCHHHHTSCHHHHHHHHHHHHHHT------TTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSC
T ss_pred HhccCCCCcccccHHHHHHHHHHHHHHH------HhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCC
Confidence 742 22 45678889999988764 468899999999998877642 11135666779999999999855
Q ss_pred -cccHHHHHHHHHHHHHHHHH
Q 006253 540 -DETAPMVMQLVPLIMMELHQ 559 (653)
Q Consensus 540 -~~~~~~~~~l~~~l~~~l~~ 559 (653)
+.+.++...++|.+...+++
T Consensus 632 ~~~~~~~~~~~~p~~~~iL~~ 652 (960)
T 1wa5_C 632 RQNLPLLVDSMMPTFLTVFSE 652 (960)
T ss_dssp GGGHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHHh
Confidence 35677888888888777664
No 21
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.84 E-value=2.9e-18 Score=179.56 Aligned_cols=405 Identities=11% Similarity=0.092 Sum_probs=296.2
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCC--ChhHHHHHHHHHHHHHhhhc----------
Q 006253 96 FILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQL--PPHTKQATLETLGYICEEVS---------- 163 (653)
Q Consensus 96 ~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~--~~~~~~~~l~~l~~l~~~~~---------- 163 (653)
.++..+.+++..+|++|-..+..+...+. |+++..|.+.+.+. ++.+|..|...|..++....
T Consensus 5 ~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~-----~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~ 79 (462)
T 1ibr_B 5 TILEKTVSPDRLELEAAQKFLERAAVENL-----PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQR 79 (462)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhCh-----HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhh
Confidence 45666778899999999999998765322 45556666665543 68899999999998874310
Q ss_pred ccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCC--cHHHHHHHHH
Q 006253 164 SDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSP--EVKIRQAAFE 241 (653)
Q Consensus 164 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~--~~~~~~~~~~ 241 (653)
...+..+....+-..+++.+. ++++.+ ..+..++..+...... ...+..+++.+...++++ ++.++..++.
T Consensus 80 ~~~l~~~~~~~ik~~ll~~l~--~~~~~v-~~~~~~i~~ia~~~~~----~~~w~~ll~~L~~~l~~~~~~~~~r~~al~ 152 (462)
T 1ibr_B 80 WLAIDANARREVKNYVLQTLG--TETYRP-SSASQCVAGIACAEIP----VNQWPELIPQLVANVTNPNSTEHMKESTLE 152 (462)
T ss_dssp HHTSCHHHHHHHHHHHHHHTT--CCCSSS-CSHHHHHHHHHHHHGG----GTCCTTHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHhC--CCCchh-hHHHHHHHHHHHHhcc----ccccHHHHHHHHHHhccCCCCHHHHHHHHH
Confidence 011323334556666777777 445566 7788888887764311 113467888888888777 8999999999
Q ss_pred HHHHHHHHh-HHhhHHhHHHHHHHHHHHhhcC--ChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhh
Q 006253 242 CLVAISSTY-YEKLAPYIQDIFNITAKAVRED--EEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHAL 318 (653)
Q Consensus 242 ~l~~l~~~~-~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 318 (653)
+|..+++.. ++.+.++.+.+++.+.+.+++. ++.+|..++..+..+.....+ ... . .....
T Consensus 153 ~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~---~~~----------~-~~~~~-- 216 (462)
T 1ibr_B 153 AIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA---NFD----------K-ESERH-- 216 (462)
T ss_dssp HHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH---HHT----------S-HHHHH--
T ss_pred HHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH---hhh----------h-hHHHH--
Confidence 999999876 6667888999999999999987 689999999887775431100 000 0 00111
Q ss_pred hhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCC---Cchh-chHHHHHhhhcCcchhhHHHHHHHHHHh
Q 006253 319 PVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGD---DIVP-LVMPFVEENITKQEWRQREAATYAFGSI 394 (653)
Q Consensus 319 ~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~---~~~~-~l~~~l~~~l~~~~~~~r~aal~~l~~i 394 (653)
.+++.+...+. + .+..+|..+.++|..++...++ ..++ .+++.+...+.+.+..+|..++..++.+
T Consensus 217 -~l~~~l~~~~~----~-----~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~ 286 (462)
T 1ibr_B 217 -FIMQVVCEATQ----C-----PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNV 286 (462)
T ss_dssp -HHHHHHHHHTT----C-----SSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHhcC----C-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 13444433221 1 2257899999999999988764 4466 7888877778888889999999888877
Q ss_pred hcC--------------------CCCCcchHHHHHHHHHHHHHhcCC-------CchHHHHHHHHHHHHHHhhhccCCCC
Q 006253 395 LEG--------------------PSPEKLVPLVNIALNFMLTALMQD-------PNNHVKDTTAWTLGRMFEFLHGSTLE 447 (653)
Q Consensus 395 ~~~--------------------~~~~~~~~~l~~l~~~ll~~l~~d-------~~~~vr~~a~~~l~~~~~~~~~~~~~ 447 (653)
++. .....+.+++..++|.++..+ .+ .++.+|.+|..+++.++..++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l-~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~----- 360 (462)
T 1ibr_B 287 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL-TKQDENDDDDDWNPCKAAGVCLMLLATCCE----- 360 (462)
T ss_dssp HHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHT-TCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHH-HhcccccccccchHHHHHHHHHHHHHHhcc-----
Confidence 642 111234456788999988888 43 356899999999999999874
Q ss_pred ccccCccchHHHHHHHHHhccc-hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccchhchHHH
Q 006253 448 TPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTA 526 (653)
Q Consensus 448 ~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~ 526 (653)
...++.+++.+...+.+ +.++|..|+.+++.+++.+. ...+.++++.+++.+++.+++.. ..+|..
T Consensus 361 -----~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~-----~~~~~~~l~~~~~~l~~~l~d~~---~~Vr~~ 427 (462)
T 1ibr_B 361 -----DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPE-----PSQLKPLVIQAMPTLIELMKDPS---VVVRDT 427 (462)
T ss_dssp -----TTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC-----TTTTCTTTTTHHHHHHHGGGCSC---HHHHHH
T ss_pred -----HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCc-----HHHHHHHHHHHHHHHHHHhcCCC---HHHHHH
Confidence 36778899999999887 78999999999999998543 35678899999999999998764 689999
Q ss_pred HHHHHHHHHHhccccc--HHHHHHHHHHHHHHH
Q 006253 527 AYETLNEVVRCSTDET--APMVMQLVPLIMMEL 557 (653)
Q Consensus 527 ~~~~l~~l~~~~~~~~--~~~~~~l~~~l~~~l 557 (653)
++.+++.++...+..+ .+|+..+++.+++.+
T Consensus 428 a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L 460 (462)
T 1ibr_B 428 AAWTVGRICELLPEAAINDVYLAPLLQCLIEGL 460 (462)
T ss_dssp HHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC-
T ss_pred HHHHHHHHHHhcccccccHHHHHHHHHHHHHHh
Confidence 9999999999988764 578888888887654
No 22
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.83 E-value=3.6e-16 Score=178.89 Aligned_cols=563 Identities=12% Similarity=0.094 Sum_probs=354.2
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhh----CcchHHHHHHHHHhcCC---CChhHHHHHHHHHhhhcchh----hh-
Q 006253 5 VTQILLNAQSVDGTVRKQAEESLKQYQEQ----NLPGFLLSLAGELVNDE---KPVESRKLAGLILKNALDAK----EQ- 72 (653)
Q Consensus 5 l~~ll~~~~s~d~~~r~~A~~~L~~~~~~----~~~~~~~~l~~il~~~~---~~~~~r~~a~~~l~~~i~~~----~~- 72 (653)
+.+.+....++++.+|.+.-..+..+.+. +||+++..+++.+.+.. .++..+..+..+|+...+.. +.
T Consensus 105 ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~ 184 (963)
T 2x19_B 105 LFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQ 184 (963)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC--
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcH
Confidence 34444443334578999999888877665 57899999999876410 14456677777766644211 00
Q ss_pred hhHHHhhhhccCCChHHHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHH
Q 006253 73 HRKFELVQRWLSLDSSVKAQIKSFILKTLSSPA--HDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQA 150 (653)
Q Consensus 73 ~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~--~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~ 150 (653)
.++... -..+. .....+.+.+.+.+.+.+ ..++..+..++...+....+...++.+++.+++.+. ++..+..
T Consensus 185 ~~r~~~---~~~l~-~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~~~~~~ll~~l~~~l~--~~~~~~~ 258 (963)
T 2x19_B 185 YRKGLV---RTSLA-VECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQDCEALIQAAFAALQ--DSELFDS 258 (963)
T ss_dssp ----------CCSG-GGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCGGGTHHHHHHHHHHTT--STTTHHH
T ss_pred HHHHHH---HHHHH-HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHhC--CchHHHH
Confidence 000000 01122 234456666666666543 247888888887766532222245789999998884 6778999
Q ss_pred HHHHHHHHHhhhcccccchhhHhHHHHHHHhc-------ccCCCCCHHHHHHHHHHHHHHHHhhhhhcC----ChhHHHH
Q 006253 151 TLETLGYICEEVSSDAVEQDHVNKILTAVVQG-------MNASESNNDVRLAATRALYNALGFAQANFS----NDMERDY 219 (653)
Q Consensus 151 ~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~-------l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~----~~~~~~~ 219 (653)
++.|+..++....+... .+.+..+++.++.. +. +.+.+.....++.+..+.......+. .......
T Consensus 259 a~~~l~~i~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~--~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~ 335 (963)
T 2x19_B 259 SVEAIVNAISQPDAQRY-VNTLLKLIPLVLGLQEQLRQAVQ--NGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLA 335 (963)
T ss_dssp HHHHHHHHHTCTTGGGC-HHHHHHHHHHHHTTHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHcccccccC-HHHHHHHHHHHHhhHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHH
Confidence 99999999875322222 34455555554432 22 23445555566777666543222221 1122245
Q ss_pred HHHHHHhhhcC-----CcHHHHHHHHHHHHHHHHHh-----------HHhhHHhHHHHHHHHHHHhhcCChh--------
Q 006253 220 IMRVVCEATLS-----PEVKIRQAAFECLVAISSTY-----------YEKLAPYIQDIFNITAKAVREDEEP-------- 275 (653)
Q Consensus 220 il~~l~~~~~~-----~~~~~~~~~~~~l~~l~~~~-----------~~~~~~~l~~l~~~~~~~~~~~~~~-------- 275 (653)
+++.+.....+ .++++...++..|..+++.. ...+.+++..+++.++..+..++++
T Consensus 336 ~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~d 415 (963)
T 2x19_B 336 LVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSD 415 (963)
T ss_dssp HHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHH
T ss_pred HHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChh
Confidence 66777666654 35667778888888887732 2345678888888888877533221
Q ss_pred -------HHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccccHhhh
Q 006253 276 -------VALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMA 348 (653)
Q Consensus 276 -------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~ 348 (653)
.|..+.+++..++.. .....++.+++.+...+..... ..+|..+.+
T Consensus 416 e~~~~~~~r~~~~~~L~~~~~~----------------------~~~~~l~~~~~~l~~~l~~~~~-----~~~w~~~ea 468 (963)
T 2x19_B 416 EKEQFRIYRVDISDTLMYVYEM----------------------LGAELLSNLYDKLGRLLTSSEE-----PYSWQHTEA 468 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----------------------HTHHHHHHHHHHHHHHHHTCCC-----SCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------------------ccHHHHHHHHHHHHHHHHhcCC-----CCchHHHHH
Confidence 122222222222211 0122233334444333322211 245999999
Q ss_pred HHHHHHHHHhhcCC---CchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchH
Q 006253 349 GGTCLGLVARTVGD---DIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNH 425 (653)
Q Consensus 349 a~~~L~~l~~~~~~---~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~ 425 (653)
+..+++.++..+.+ ..++.+++.+.+ +.++++.+|.++++++|.+++... . -..+++.+++.++..+ ++ +.
T Consensus 469 al~al~~i~~~~~~~~~~~l~~l~~~l~~-l~~~~~~vr~~~~~~l~~~~~~l~-~-~~~~l~~vl~~l~~~l-~~--~~ 542 (963)
T 2x19_B 469 LLYGFQSIAETIDVNYSDVVPGLIGLIPR-ISISNVQLADTVMFTIGALSEWLA-D-HPVMINSVLPLVLHAL-GN--PE 542 (963)
T ss_dssp HHHHHHHHTTSCCSSCCSHHHHHHHHGGG-SCCCSHHHHHHHHHHHHHTHHHHH-H-CHHHHTTTHHHHHHHT-TC--GG
T ss_pred HHHHHHHHHhhcCchhhHHHHHHHHHHHh-CCCCcHHHHHHHHHHHHHHHHHHH-h-CHHHHHHHHHHHHHHh-CC--ch
Confidence 99999999988753 455666665443 344578899999999999886432 1 2367888999999999 76 89
Q ss_pred HHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc---hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhH
Q 006253 426 VKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD---VPNVAEKACGALYFLAQGFEDAISPSSPLTPFF 502 (653)
Q Consensus 426 vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d---~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l 502 (653)
|+.+|++++.++++.+.. ...+|++.+++.+...+.. +...+..+..+++.++...+ .....+|+
T Consensus 543 V~~~A~~al~~l~~~~~~-------~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~-----~~~~~~~~ 610 (963)
T 2x19_B 543 LSVSSVSTLKKICRECKY-------DLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQ-----VEEILKNL 610 (963)
T ss_dssp GHHHHHHHHHHHHHHTGG-------GCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSC-----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCC-----HHHHHHHH
Confidence 999999999999987753 3678999999999888763 35788888999999987542 14467899
Q ss_pred HHHHHHHHHhccc----c-ccchhchHHHHHHHHHHHHHhcccc----------------------cHHHHHHHHHHHHH
Q 006253 503 QEIVQALLTVTHR----E-DAGESRLRTAAYETLNEVVRCSTDE----------------------TAPMVMQLVPLIMM 555 (653)
Q Consensus 503 ~~i~~~L~~~l~~----~-~~~~~~~~~~~~~~l~~l~~~~~~~----------------------~~~~~~~l~~~l~~ 555 (653)
+.+++.+...++. . +.+....+...+++++.+++.++.. +.+++..++|.+.+
T Consensus 611 ~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (963)
T 2x19_B 611 HSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQK 690 (963)
T ss_dssp HHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHH
Confidence 9888888776642 1 1101223347888999998887631 34577777777766
Q ss_pred HHHHHHHhhcCChhHHHhHHHHHHHHHhHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccCcchhhhHHHHHHHH
Q 006253 556 ELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGAL 635 (653)
Q Consensus 556 ~l~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~e~~~~~~~~l 635 (653)
.++... ++. .+...++.+++.++..+|.. +.||++++++.++..+.... . -..+..++.+
T Consensus 691 ~l~~~~-------~~~----~v~e~~~~~l~~~~~~~~~~------~~~~l~~~~~~l~~~~~~~~--~-~~~l~l~~~l 750 (963)
T 2x19_B 691 VLSKWL-------NDA----QVVEAVCAIFEKSVKTLLDD------FAPMVPQLCEMLGRMYSTIP--Q-ASALDLTRQL 750 (963)
T ss_dssp HHHHHT-------TCH----HHHHHHHHHHHHHHHHSSST------TGGGHHHHHHHHHHHHHHSC--C-HHHHHHHHHH
T ss_pred HHHhcc-------Cch----HHHHHHHHHHHHHHHhhccc------ccccHHHHHHHHHHHHHcCC--c-cHHHHHHHHH
Confidence 666532 111 24456788999999999999 99999999999888776521 1 2455566667
Q ss_pred HHHhcc
Q 006253 636 AYATGL 641 (653)
Q Consensus 636 ~~~~~~ 641 (653)
+..+|.
T Consensus 751 i~~f~~ 756 (963)
T 2x19_B 751 VHIFAH 756 (963)
T ss_dssp HHHHTT
T ss_pred HHHhCC
Confidence 664443
No 23
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.83 E-value=7.9e-18 Score=180.47 Aligned_cols=512 Identities=13% Similarity=0.086 Sum_probs=336.1
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHH--HhhCcchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhh
Q 006253 4 EVTQILLNAQSVDGTVRKQAEESLKQY--QEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQR 81 (653)
Q Consensus 4 ~l~~ll~~~~s~d~~~r~~A~~~L~~~--~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~ 81 (653)
++.++-+.+.++|...|+.+-..+--+ ...+.+.+...+++.+. +.+..+|+++..++..+.+.
T Consensus 14 e~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d~~~~~~~vi~l~~--s~~~~~Krl~yl~l~~~~~~------------ 79 (591)
T 2vgl_B 14 EIFELKAELNNEKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQ--TDNLELKKLVYLYLMNYAKS------------ 79 (591)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHTTCCCGGGHHHHHHTTS--SSCHHHHHHHHHHHHHHHHH------------
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccc------------
Confidence 566777778888988888888887643 33455566667777655 45799999999998886542
Q ss_pred ccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhh
Q 006253 82 WLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEE 161 (653)
Q Consensus 82 ~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~ 161 (653)
.++....+.+.+.+.|.++++.+|..|..+++.+. .+ ..++.+++.+..++.++++.+|..|+.++..++..
T Consensus 80 ----~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~---~~-~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~ 151 (591)
T 2vgl_B 80 ----QPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR---VD-KITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDI 151 (591)
T ss_dssp ----SHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC---SG-GGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHS
T ss_pred ----CchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC---hH-HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhh
Confidence 23333445677888899999999988877777665 23 36788899999999999999999999999999986
Q ss_pred hcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHH
Q 006253 162 VSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFE 241 (653)
Q Consensus 162 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~ 241 (653)
. |+.+ .. ..+++.+.+.+. |+++.|+..|+.+|..+...-++.... ......++.++..+.+.++-.+..+++
T Consensus 152 ~-p~~~-~~--~~~~~~l~~lL~--d~d~~V~~~A~~aL~~i~~~~~~~~~~-~l~~~~~~~Ll~~l~~~~~~~q~~il~ 224 (591)
T 2vgl_B 152 N-AQMV-ED--QGFLDSLRDLIA--DSNPMVVANAVAALSEISESHPNSNLL-DLNPQNINKLLTALNECTEWGQIFILD 224 (591)
T ss_dssp S-CCCH-HH--HHHHHHHHHTTS--CSCHHHHHHHHHHHHHHTTSCCSCCSC-CCHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred C-hhhc-cc--ccHHHHHHHHhC--CCChhHHHHHHHHHHHHHhhCCCccch-hccHHHHHHHHHcCCCCCchHHHHHHH
Confidence 6 6655 21 468889999998 899999999999999865432211000 011234444554444555555656666
Q ss_pred HHHHHHHHhHHhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhh
Q 006253 242 CLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVL 321 (653)
Q Consensus 242 ~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 321 (653)
.+..+.... ......+++.+...+++.++.++..|+.++..+.... . ......+.....+
T Consensus 225 ~l~~l~~~~----~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~-------~---------~~~~~~~~~~~~~ 284 (591)
T 2vgl_B 225 CLSNYNPKD----DREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELL-------P---------KDSDYYNMLLKKL 284 (591)
T ss_dssp HHHTSCCCS----HHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSC-------C---------BTTBSHHHHHHHT
T ss_pred HHHHhCCCC----hHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhcc-------C---------CCHHHHHHHHHHH
Confidence 554433211 1234567777777788889999999998888775310 0 0012233334455
Q ss_pred HHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCC
Q 006253 322 VPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPE 401 (653)
Q Consensus 322 ~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~ 401 (653)
.+.++..+. . +.++|..|..++..++...++.+.+.+-.++ ...++++.+|..++..+..++.. .
T Consensus 285 ~~~L~~L~~---~-------d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~--~~~~d~~~Ir~~al~~L~~l~~~---~ 349 (591)
T 2vgl_B 285 APPLVTLLS---G-------EPEVQYVALRNINLIVQKRPEILKQEIKVFF--VKYNDPIYVKLEKLDIMIRLASQ---A 349 (591)
T ss_dssp HHHHHHHTT---S-------CHHHHHHHHHHHHHHHHHCCSTTTTCTTTTS--CCTTSCHHHHHHHHHHHHHTCCS---S
T ss_pred HHHHHHHhc---C-------CccHHHHHHHHHHHHHHhChHHHHHHHHhhe--eccCChHHHHHHHHHHHHHHCCh---h
Confidence 565554321 1 1478999999999999887765554433221 22244489999999999988754 2
Q ss_pred cchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc-hhhHHHHHHHH
Q 006253 402 KLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGA 480 (653)
Q Consensus 402 ~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~a 480 (653)
. +..+++.+...+ .+.+..+|..++++++.++..++ +....+++.+++.+.+ ...++..+..+
T Consensus 350 n----v~~iv~~L~~~l-~~~d~~~r~~~v~aI~~la~~~~-----------~~~~~~v~~Ll~ll~~~~~~v~~e~i~~ 413 (591)
T 2vgl_B 350 N----IAQVLAELKEYA-TEVDVDFVRKAVRAIGRCAIKVE-----------QSAERCVSTLLDLIQTKVNYVVQEAIVV 413 (591)
T ss_dssp T----HHHHHHHHHHHT-TSSCHHHHHHHHHHHHHHHTTCH-----------HHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred h----HHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhCh-----------hHHHHHHHHHHHHHcccchHHHHHHHHH
Confidence 2 456777788888 88899999999999999998764 3446677788887776 56777788888
Q ss_pred HHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHH
Q 006253 481 LYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQT 560 (653)
Q Consensus 481 l~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~ 560 (653)
+..++..... .. +.+++.|...+.+.. +..++..++.++|.......+ ...++..+++.+
T Consensus 414 l~~ii~~~p~-------~~---~~~v~~L~~~l~~~~--~~~~~~~~~wilGey~~~~~~-----~~~~l~~l~~~~--- 473 (591)
T 2vgl_B 414 IRDIFRKYPN-------KY---ESIIATLCENLDSLD--EPDARAAMIWIVGEYAERIDN-----ADELLESFLEGF--- 473 (591)
T ss_dssp HHHHHHHSCS-------SC---CTTHHHHHHTTTTCC--SHHHHHHHHHHHHTTCTTCTT-----HHHHHHHHSTTC---
T ss_pred HHHHHHHCcc-------hH---HHHHHHHHHHHHhcc--CHHHHHHHHHHHHcccccccC-----HHHHHHHHHHhh---
Confidence 8888876422 11 234555666665443 355677777777777554432 112222222111
Q ss_pred HHhhcCChhHHHhHHHHHHHHHhHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHH-hc-cCcchhhhHHHHHHHH
Q 006253 561 LEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVF-AI-RSATAHEEAMLAIGAL 635 (653)
Q Consensus 561 ~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~l~~~l-~~-~~~~~~e~~~~~~~~l 635 (653)
..+. ..+|..++.++..+....+.. ..+ .+..+++.. .+ .+.++|+.|...++-+
T Consensus 474 ------~~~~----~~vr~~~l~a~~Kl~~~~p~~------~~~----~i~~ll~~~~~d~~d~evrdRA~~y~~ll 530 (591)
T 2vgl_B 474 ------HDES----TQVQLTLLTAIVKLFLKKPSE------TQE----LVQQVLSLATQDSDNPDLRDRGYIYWRLL 530 (591)
T ss_dssp ------SSSC----HHHHHHHHHHHHHHHTTCCST------THH----HHHHHHHHHHTTCCCHHHHHHHHHHHTTT
T ss_pred ------ccCC----HHHHHHHHHHHHHHHhcCchH------HHH----HHHHHHHHhhhcCCChHHHHHHHHHHHHH
Confidence 1112 146666777787777665443 323 333333443 33 4568999887766554
No 24
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.82 E-value=1.6e-17 Score=189.89 Aligned_cols=566 Identities=11% Similarity=0.078 Sum_probs=340.1
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhh---CcchHHHHHHHHHhcCCC----ChhHHHHHHHHHhhhcchhhhh----
Q 006253 5 VTQILLNAQSVDGTVRKQAEESLKQYQEQ---NLPGFLLSLAGELVNDEK----PVESRKLAGLILKNALDAKEQH---- 73 (653)
Q Consensus 5 l~~ll~~~~s~d~~~r~~A~~~L~~~~~~---~~~~~~~~l~~il~~~~~----~~~~r~~a~~~l~~~i~~~~~~---- 73 (653)
+.+.+....++.+.+|.+.-+.|..+.+. .||+++..+++.+.+++. ++..+..+..+|+..-+...+.
T Consensus 87 ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~ 166 (971)
T 2x1g_F 87 ILESIVRFAGGPKIVLNRLCISLGAYIVHMLGEWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSV 166 (971)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTCC------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSS
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHH
Confidence 44444444334578999999999887776 577888888888765211 3456777777777654321000
Q ss_pred hHHHhhhhccCCChHHHHHHHHHHHHhcCCC-C-------hHHHHHHHHHHHHHHhh-hcCCCCCchHHHHHHHhhc---
Q 006253 74 RKFELVQRWLSLDSSVKAQIKSFILKTLSSP-A-------HDARSTASQVVAKVAGI-ELPHKQWPELIGALLSNIH--- 141 (653)
Q Consensus 74 ~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~-~-------~~vr~~~~~~l~~ia~~-~~~~~~~~~l~~~l~~~l~--- 141 (653)
++.... ..+. .....+.+.+.+.+... + ..++..+..|+...+.. ..|......+++.+++ +.
T Consensus 167 ~r~~~~---~~l~-~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~~~~~ll~~l~~-L~~~~ 241 (971)
T 2x1g_F 167 KRVVLR---AEIA-KRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTITAVLLE-VVHKC 241 (971)
T ss_dssp CHHHHH---HHHH-TTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHH-HHHHH
T ss_pred HHHHHH---HHHH-HHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCccccccHHHHHHh-hhhhh
Confidence 000000 0000 01123333333444321 1 27888999999888774 2342233567787777 51
Q ss_pred -------------CCChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHh-------cccCCCCC---HHHHHHHHH
Q 006253 142 -------------QLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQ-------GMNASESN---NDVRLAATR 198 (653)
Q Consensus 142 -------------~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~-------~l~~~~~~---~~vr~~a~~ 198 (653)
++++..++.++.++..++..-.+... ...+..++|.+.. .+. +.+ .+.....++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~--~~d~~~~~~~~~l~~ 318 (971)
T 2x1g_F 242 YWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNY-PKTAFVLIKMFLDSLSEITKTEW--KRENDNEDIIVHIYM 318 (971)
T ss_dssp HSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGC-HHHHHHHHHHHHHHHHHHHHHHS--SSSCSCSHHHHHHHH
T ss_pred ccccccccccccCcCCcHHHHHHHHHHHHHHcCcccccc-HHHHHHHHHHHHHhHHHHHHHHh--cccccchHHHHHHHH
Confidence 14678899999999999875322111 2334445554433 223 223 255556677
Q ss_pred HHHHHHHhhhhhcC---------ChhHHHHHHHHHHhhhcC-----CcHHHHHHHHHHHHHHHHHh------------HH
Q 006253 199 ALYNALGFAQANFS---------NDMERDYIMRVVCEATLS-----PEVKIRQAAFECLVAISSTY------------YE 252 (653)
Q Consensus 199 ~l~~~~~~~~~~~~---------~~~~~~~il~~l~~~~~~-----~~~~~~~~~~~~l~~l~~~~------------~~ 252 (653)
.+..+.+.....+. .......+++.++..+.. .++++...++..|..+++.. ..
T Consensus 319 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~ 398 (971)
T 2x1g_F 319 LFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWE 398 (971)
T ss_dssp HHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHH
Confidence 77766643222111 111224566776665533 47788999999998887632 13
Q ss_pred hhHHhHHHHHHHHHHHhhcCCh---------------hHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhh
Q 006253 253 KLAPYIQDIFNITAKAVREDEE---------------PVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHA 317 (653)
Q Consensus 253 ~~~~~l~~l~~~~~~~~~~~~~---------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (653)
.+.+++..+++.++..+..+++ +.|..+.+++..++.. +-...
T Consensus 399 ~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~----------------------~~~~~ 456 (971)
T 2x1g_F 399 YIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDV----------------------LNDYI 456 (971)
T ss_dssp HHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTT----------------------CTTHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHH----------------------HhHHH
Confidence 4467788888888877642211 1333333333333320 00223
Q ss_pred hhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCC---CchhchHHHHHhhhc-CcchhhHHHHHHHHHH
Q 006253 318 LPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGD---DIVPLVMPFVEENIT-KQEWRQREAATYAFGS 393 (653)
Q Consensus 318 l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~---~~~~~l~~~l~~~l~-~~~~~~r~aal~~l~~ 393 (653)
++.+++.+...+.....+ ..+|..|.+|..+++.++..+.+ ..++.+++.+..... ++++.+|.++++++|.
T Consensus 457 l~~~~~~l~~~l~~~~~~----~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~ 532 (971)
T 2x1g_F 457 LEILAAMLDEAIADLQRH----PTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGS 532 (971)
T ss_dssp HHHHHHHHHHHHHHHHHC----TTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCC----CCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHH
Confidence 333444444444321111 24599999999999999887753 456667775544432 4578999999999999
Q ss_pred hhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc---h
Q 006253 394 ILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD---V 470 (653)
Q Consensus 394 i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d---~ 470 (653)
+++-...+ ..+++.+++.++..+ + +.|+.+|++++.++++.+.. ...+|++.++..+...+.. +
T Consensus 533 ~~~~l~~~--~~~l~~vl~~l~~~l-~---~~v~~~A~~al~~l~~~~~~-------~l~p~~~~ll~~l~~~l~~~~~~ 599 (971)
T 2x1g_F 533 YCNWLMEN--PAYIPPAINLLVRGL-N---SSMSAQATLGLKELCRDCQL-------QLKPYADPLLNACHASLNTGRMK 599 (971)
T ss_dssp THHHHC------CHHHHHHHHHHHH-H---SSCHHHHHHHHHHHHHHCHH-------HHHHHHHHHHHHHHHHHHSTTSC
T ss_pred HHHHHhcC--HHHHHHHHHHHHHHh-C---hHHHHHHHHHHHHHHHHHHH-------hccccHHHHHHHHHHHHcCCCCC
Confidence 88754222 267888999999988 4 78999999999999987753 3568888999888888774 3
Q ss_pred hhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhcc----cc--ccchhchHHHHHHHHHHHHHhccc----
Q 006253 471 PNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTH----RE--DAGESRLRTAAYETLNEVVRCSTD---- 540 (653)
Q Consensus 471 ~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~----~~--~~~~~~~~~~~~~~l~~l~~~~~~---- 540 (653)
...+..+..++..++.... .....+|+..+++.++..+. .. +.++.......++.|+.+++..+.
T Consensus 600 ~~~~~~~~~ai~~i~~~~~-----~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~ 674 (971)
T 2x1g_F 600 NSDSVRLMFSIGKLMSLLR-----PEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDE 674 (971)
T ss_dssp HHHHHHHHHHHHHHHHTSC-----TTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred hHHHHHHHHHHHHHHHhCC-----HHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCc
Confidence 5778889999999987642 24566777777776665443 22 100112223566666666665542
Q ss_pred ---------ccHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHhHHHHHHHHhCCCcchhhHhhHhHHHHHH
Q 006253 541 ---------ETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMG 611 (653)
Q Consensus 541 ---------~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~i~~ 611 (653)
.+.|++..++|.+...+... .++. .+...++.+++.++..+|+. +.||++++++
T Consensus 675 ~~~~~~~~~~~~~~~~~i~~~l~~~l~~~-------~~~~----~v~e~~~~~~~~~~~~~~~~------~~p~l~~~~~ 737 (971)
T 2x1g_F 675 QATDQPIVQPVLLVMQRTMPIFKRIAEMW-------VEEI----DVLEAACSAMKHAITNLRSS------FQPMLQDLCL 737 (971)
T ss_dssp ---------CCHHHHHTTHHHHHHHHHHT-------TTCH----HHHHHHHHHHHHHHHHHHC--------CTHHHHHHH
T ss_pred ccccccCCCchHHHHHHHHHHHHHHHHhc-------cccH----HHHHHHHHHHHHHHHhhhhh------ccccHHHHHH
Confidence 35678888888877766542 1121 34556889999999999998 9999999999
Q ss_pred HHHHHHhccCcchhhhHHHHHHHHHHHhccC
Q 006253 612 LFLRVFAIRSATAHEEAMLAIGALAYATGLW 642 (653)
Q Consensus 612 ~l~~~l~~~~~~~~e~~~~~~~~l~~~~~~~ 642 (653)
.++..++... . .+++..++.++..+|.+
T Consensus 738 ~l~~~~~~~~--~-~~~l~l~~~~i~~~~~~ 765 (971)
T 2x1g_F 738 FIVASFQTRC--C-APTLEISKTAIVMFFKD 765 (971)
T ss_dssp HHHHHCC--C--C-HHHHHHHHHHHTTCCC-
T ss_pred HHHHHHhcCC--c-hHHHHHHHHHHHHhCCC
Confidence 9998887632 1 45777888888888764
No 25
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.81 E-value=5.8e-18 Score=176.65 Aligned_cols=400 Identities=12% Similarity=0.077 Sum_probs=278.3
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHhhhc-CCC----CCchHHHHHHHhhcCC-ChhHHHHHHHHHHHHHhhhccccc
Q 006253 94 KSFILKTLSSPAHDARSTASQVVAKVAGIEL-PHK----QWPELIGALLSNIHQL-PPHTKQATLETLGYICEEVSSDAV 167 (653)
Q Consensus 94 ~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~-~~~----~~~~l~~~l~~~l~~~-~~~~~~~~l~~l~~l~~~~~~~~~ 167 (653)
.+.+++.+.++++.+|..++.++..++.... +.. .-+.+++.|++.++++ ++.+|..++.+|..++... ++..
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~-~~~~ 100 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGN-SLQT 100 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSC-HHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHH
Confidence 4567788888999999999999999876321 210 0127899999999988 8999999999999988743 2211
Q ss_pred chh-hHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcC-CcHHHHHHHHHHHHH
Q 006253 168 EQD-HVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLS-PEVKIRQAAFECLVA 245 (653)
Q Consensus 168 ~~~-~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~l~~ 245 (653)
.. .-..++|.+.+.+. ++++++|..|+.+|.++....+.... .......++.+..++.+ .+++++..++.+|..
T Consensus 101 -~~~~~~~~i~~L~~lL~--~~~~~vr~~a~~~L~~l~~~~~~~~~-~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~ 176 (450)
T 2jdq_A 101 -RIVIQAGAVPIFIELLS--SEFEDVQEQAVWALGNIAGDSTMCRD-YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSN 176 (450)
T ss_dssp -HHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHHTTCHHHHH-HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred -HHHHhCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHccCCHHHHH-HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 11 12458899999998 67899999999999997753211100 00012356777777774 789999999999999
Q ss_pred HHHHh-HHhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHH
Q 006253 246 ISSTY-YEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPL 324 (653)
Q Consensus 246 l~~~~-~~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 324 (653)
++... +..-......++|.++..+.+.+++++..++..+..++....+ ....+ .-..++|.
T Consensus 177 l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~----------------~~~~~--~~~~~i~~ 238 (450)
T 2jdq_A 177 LCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPND----------------KIQAV--IDAGVCRR 238 (450)
T ss_dssp HHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHH----------------HHHHH--HHTTTHHH
T ss_pred HhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcH----------------HHHHH--HHcCcHHH
Confidence 98654 2222233456788888888888999999999888888753110 00111 11246777
Q ss_pred HHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCC---Cch-hchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCC
Q 006253 325 LLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGD---DIV-PLVMPFVEENITKQEWRQREAATYAFGSILEGPSP 400 (653)
Q Consensus 325 l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~---~~~-~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~ 400 (653)
++..+.. .++.+|..|..+|..++...++ .++ ..+++.+.+.+.++++.+|..++++++.++.+. .
T Consensus 239 L~~ll~~---------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~-~ 308 (450)
T 2jdq_A 239 LVELLMH---------NDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGN-R 308 (450)
T ss_dssp HHHHTTC---------SCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSC-H
T ss_pred HHHHHCC---------CchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-H
Confidence 7776651 2268899999999988764321 111 246677778888889999999999999999864 3
Q ss_pred CcchHHH-HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccch-HHHHHHHHHhccc-hhhHHHHH
Q 006253 401 EKLVPLV-NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNC-QQIISVLLQSMKD-VPNVAEKA 477 (653)
Q Consensus 401 ~~~~~~l-~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~-~~il~~l~~~l~d-~~~v~~~a 477 (653)
......+ ..++|.++..+ +++++.+|..|+|+|++++..... ......+ ..+++.|+..+.+ +++++..|
T Consensus 309 ~~~~~~~~~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l~~~~~~------~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a 381 (450)
T 2jdq_A 309 AQIQTVIDANIFPALISIL-QTAEFRTRKEAAWAITNATSGGSA------EQIKYLVELGCIKPLCDLLTVMDSKIVQVA 381 (450)
T ss_dssp HHHHHHHHTTHHHHHHHHH-HHSCHHHHHHHHHHHHHHHHHCCH------HHHHHHHHHTCHHHHHHGGGSSCHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHH-hcCCHHHHHHHHHHHHHHHcCCCH------HHHHHHHHCCCHHHHHHHhcCCCHHHHHHH
Confidence 3333444 36789999999 899999999999999999875321 0111122 3578899999886 78999999
Q ss_pred HHHHHHHHhcccCCC-CCCCCCchhHHHH-----HHHHHHhccccccchhchHHHHHHHHHHHHH
Q 006253 478 CGALYFLAQGFEDAI-SPSSPLTPFFQEI-----VQALLTVTHREDAGESRLRTAAYETLNEVVR 536 (653)
Q Consensus 478 ~~al~~~~~~~~~~~-~~~~~l~~~l~~i-----~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~ 536 (653)
+.+|..++....... .....+.+|...+ ++.|..+.... +..+++.++.++..+..
T Consensus 382 ~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~---~~~v~~~a~~~l~~~~~ 443 (450)
T 2jdq_A 382 LNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHE---NQEIYQKAFDLIEHYFG 443 (450)
T ss_dssp HHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHH---HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCC---CHHHHHHHHHHHHHHCC
Confidence 999999997532100 0012355777766 56666665544 35677788888877763
No 26
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.80 E-value=1.6e-16 Score=170.32 Aligned_cols=441 Identities=15% Similarity=0.145 Sum_probs=309.2
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHhhCcchHHHHHHHHHhc--CCCChhHHHHHHHHHhhhcchhhhhhHHHhhh
Q 006253 3 AEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVN--DEKPVESRKLAGLILKNALDAKEQHRKFELVQ 80 (653)
Q Consensus 3 ~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~--~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~ 80 (653)
.-+..+++.+.++|.++|+.+.-.+..+.+.+ ++....+++.+.. .+.++.+|..|+..+.+..
T Consensus 49 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~-~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~------------- 114 (591)
T 2vgl_B 49 SLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ-PDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR------------- 114 (591)
T ss_dssp GGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS-HHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC-------------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC-chHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC-------------
Confidence 34567777778899999999999998876643 4554444444432 2468899999988877743
Q ss_pred hccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCc--hHHHHHHHhhcCCChhHHHHHHHHHHHH
Q 006253 81 RWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWP--ELIGALLSNIHQLPPHTKQATLETLGYI 158 (653)
Q Consensus 81 ~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~--~l~~~l~~~l~~~~~~~~~~~l~~l~~l 158 (653)
+++..+.+.+.+.+++.++++.||+.|+.++..++... | +.++ ++++.+.+.+.++++.++..|+.+|+.+
T Consensus 115 -----~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~-p-~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i 187 (591)
T 2vgl_B 115 -----VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDIN-A-QMVEDQGFLDSLRDLIADSNPMVVANAVAALSEI 187 (591)
T ss_dssp -----SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSS-C-CCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHH
T ss_pred -----hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhC-h-hhcccccHHHHHHHHhCCCChhHHHHHHHHHHHH
Confidence 24445567778889999999999999999999999865 6 3665 5899999999999999999999999999
Q ss_pred Hhhhcccc-cchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHH
Q 006253 159 CEEVSSDA-VEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQ 237 (653)
Q Consensus 159 ~~~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~ 237 (653)
+... ++. . .......++.+++.+. +.++-.+...++++.. +.+. .......+++.+...+++.++.++.
T Consensus 188 ~~~~-~~~~~-~~l~~~~~~~Ll~~l~--~~~~~~q~~il~~l~~---l~~~---~~~~~~~~l~~l~~~l~~~~~~V~~ 257 (591)
T 2vgl_B 188 SESH-PNSNL-LDLNPQNINKLLTALN--ECTEWGQIFILDCLSN---YNPK---DDREAQSICERVTPRLSHANSAVVL 257 (591)
T ss_dssp TTSC-CSCCS-CCCHHHHHHHHHHHHH--HCCHHHHHHHHHHHHT---SCCC---SHHHHHHHHHHHTTCSCSSTTHHHH
T ss_pred HhhC-CCccc-hhccHHHHHHHHHcCC--CCCchHHHHHHHHHHH---hCCC---ChHHHHHHHHHHHHHHcCCChHHHH
Confidence 8875 432 1 1223344555555555 5677777777776654 2221 1223356888888888888999999
Q ss_pred HHHHHHHHHHHH---hHHhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHH
Q 006253 238 AAFECLVAISST---YYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFI 314 (653)
Q Consensus 238 ~~~~~l~~l~~~---~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (653)
++++++..+... .++.+......+.+.++... +.++++|..++..+..++...++ .+
T Consensus 258 ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~-------------------~~ 317 (591)
T 2vgl_B 258 SAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPE-------------------IL 317 (591)
T ss_dssp HHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCS-------------------TT
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChH-------------------HH
Confidence 999999887532 23334444455555555443 47889999999988888763211 11
Q ss_pred HhhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHh
Q 006253 315 KHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSI 394 (653)
Q Consensus 315 ~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i 394 (653)
.+.+..+ ++. .+ ++ +.+|..|.+.+..++ .+.-+..+++.+.+.+.+.++..|..++.+++.+
T Consensus 318 ~~~~~~~-------~~~-~~-----d~-~~Ir~~al~~L~~l~---~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~l 380 (591)
T 2vgl_B 318 KQEIKVF-------FVK-YN-----DP-IYVKLEKLDIMIRLA---SQANIAQVLAELKEYATEVDVDFVRKAVRAIGRC 380 (591)
T ss_dssp TTCTTTT-------SCC-TT-----SC-HHHHHHHHHHHHHTC---CSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHhh-------eec-cC-----Ch-HHHHHHHHHHHHHHC---ChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 1111111 110 01 12 788887776665543 4445667888888888888999999999999999
Q ss_pred hcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc--hhh
Q 006253 395 LEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD--VPN 472 (653)
Q Consensus 395 ~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d--~~~ 472 (653)
+... .+....+++.++..+ .+....++..+..+++.+....+. . ...+++.+.+.+.+ .+.
T Consensus 381 a~~~-----~~~~~~~v~~Ll~ll-~~~~~~v~~e~i~~l~~ii~~~p~-------~----~~~~v~~L~~~l~~~~~~~ 443 (591)
T 2vgl_B 381 AIKV-----EQSAERCVSTLLDLI-QTKVNYVVQEAIVVIRDIFRKYPN-------K----YESIIATLCENLDSLDEPD 443 (591)
T ss_dssp HTTC-----HHHHHHHHHHHHHHH-HTCCHHHHHHHHHHHHHHHHHSCS-------S----CCTTHHHHHHTTTTCCSHH
T ss_pred HHhC-----hhHHHHHHHHHHHHH-cccchHHHHHHHHHHHHHHHHCcc-------h----HHHHHHHHHHHHHhccCHH
Confidence 9764 234556778888888 888899999999999998876642 1 23445666677764 578
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhccccc
Q 006253 473 VAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDET 542 (653)
Q Consensus 473 v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 542 (653)
++..++|.++.+.+... ..+.++..+.+.+... +..+|..++.++..+....+...
T Consensus 444 ~~~~~~wilGey~~~~~-----------~~~~~l~~l~~~~~~~---~~~vr~~~l~a~~Kl~~~~p~~~ 499 (591)
T 2vgl_B 444 ARAAMIWIVGEYAERID-----------NADELLESFLEGFHDE---STQVQLTLLTAIVKLFLKKPSET 499 (591)
T ss_dssp HHHHHHHHHHTTCTTCT-----------THHHHHHHHSTTCSSS---CHHHHHHHHHHHHHHHTTCCSTT
T ss_pred HHHHHHHHHHccccccc-----------CHHHHHHHHHHhhccC---CHHHHHHHHHHHHHHHhcCchHH
Confidence 89999999998876432 1346666666555433 36789899999999988777543
No 27
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.79 E-value=9e-18 Score=175.20 Aligned_cols=403 Identities=12% Similarity=0.094 Sum_probs=278.0
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhccCCChHHHH-HHHHHHHHhcCCC-ChHHHHHHHHHH
Q 006253 39 LLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKA-QIKSFILKTLSSP-AHDARSTASQVV 116 (653)
Q Consensus 39 ~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~-~i~~~ll~~l~~~-~~~vr~~~~~~l 116 (653)
+..+++.+.+ .++.+|..|+..|++.+...+. ..+..-... .+.+.|++.|.++ ++.+|..++.++
T Consensus 22 l~~l~~~l~s--~~~~~r~~A~~~L~~l~~~~~~----------~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L 89 (450)
T 2jdq_A 22 TSDMIEMIFS--KSPEQQLSATQKFRKLLSKEPN----------PPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVL 89 (450)
T ss_dssp CHHHHHHHHS--SCHHHHHHHHHHHHHHHHSSSS----------CCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcC--CCHHHHHHHHHHHHHHhcCCCC----------CcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 6667777765 4789999999999997642211 011111122 5778889999988 789999999999
Q ss_pred HHHHhhhcCC-C--CCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhH--hHHHHHHHhcccCCCCCHH
Q 006253 117 AKVAGIELPH-K--QWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHV--NKILTAVVQGMNASESNND 191 (653)
Q Consensus 117 ~~ia~~~~~~-~--~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~ 191 (653)
+.++...... . ...+.++.|.+.+.++++.+|+.++.+|+.++... +.. +..+ ..+++.+...+.+ +.+..
T Consensus 90 ~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~-~~~--~~~~~~~~~i~~L~~~l~~-~~~~~ 165 (450)
T 2jdq_A 90 TNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDS-TMC--RDYVLDCNILPPLLQLFSK-QNRLT 165 (450)
T ss_dssp HHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHH--HHHHHHTTCHHHHHHHTTS-CCCHH
T ss_pred HHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCC-HHH--HHHHHHCCCHHHHHHHhcC-CCCHH
Confidence 9998742110 0 12578999999999999999999999999998754 221 1211 3577888888874 47899
Q ss_pred HHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhHH-HHHHHHHHHhh
Q 006253 192 VRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQ-DIFNITAKAVR 270 (653)
Q Consensus 192 vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~ 270 (653)
+|..|+.++.++........ ........++.+...+.+++++++..++.+|..++...++....... .+++.++..+.
T Consensus 166 v~~~a~~~L~~l~~~~~~~~-~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~ 244 (450)
T 2jdq_A 166 MTRNAVWALSNLCRGKSPPP-EFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLM 244 (450)
T ss_dssp HHHHHHHHHHHHHCCSSSCC-CGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCCCCC-CHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHC
Confidence 99999999999875321111 11112457888888888889999999999999988754443332222 57888888888
Q ss_pred cCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhh-hhhHHHHHHHhhhccCCccCCCccccHhhhH
Q 006253 271 EDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHAL-PVLVPLLLETLLKQEEDQDQDEGAWNIAMAG 349 (653)
Q Consensus 271 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a 349 (653)
+.+++++..++..+..++.... ...+..+ ..++|.+...+.. .++.+|..|
T Consensus 245 ~~~~~v~~~a~~~L~~l~~~~~-------------------~~~~~~~~~~~l~~L~~ll~~---------~~~~vr~~a 296 (450)
T 2jdq_A 245 HNDYKVVSPALRAVGNIVTGDD-------------------IQTQVILNCSALQSLLHLLSS---------PKESIKKEA 296 (450)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCH-------------------HHHHHHHTTTHHHHHHHHTTC---------SSHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHhhCCh-------------------HHHHHHHHCccHHHHHHHHcC---------CCHHHHHHH
Confidence 8899999999999888875311 1111111 1467777776652 126889999
Q ss_pred HHHHHHHHhhcCC---Cch-hchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHH-HHHHHHHHHhcCCCch
Q 006253 350 GTCLGLVARTVGD---DIV-PLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVN-IALNFMLTALMQDPNN 424 (653)
Q Consensus 350 ~~~L~~l~~~~~~---~~~-~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~-~l~~~ll~~l~~d~~~ 424 (653)
..+|+.++....+ .++ ..+++.+.+.+.++++.+|..++++++.++.+..+......+. .+++.++..+ +++++
T Consensus 297 ~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll-~~~~~ 375 (450)
T 2jdq_A 297 CWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLL-TVMDS 375 (450)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGG-GSSCH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHh-cCCCH
Confidence 9999998853221 111 2456666667777889999999999999987532233333332 5889999999 89999
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCccccCccchHHH-----HHHHHHhccc-hhhHHHHHHHHHHHHHhc
Q 006253 425 HVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQI-----ISVLLQSMKD-VPNVAEKACGALYFLAQG 487 (653)
Q Consensus 425 ~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~i-----l~~l~~~l~d-~~~v~~~a~~al~~~~~~ 487 (653)
.+|..++++|++++...............+|...+ ++.+.....+ +..|+..|..++.++...
T Consensus 376 ~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 444 (450)
T 2jdq_A 376 KIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGT 444 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCc
Confidence 99999999999998865320000000123444444 4555554444 678999999999988753
No 28
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.78 E-value=1.9e-17 Score=176.11 Aligned_cols=400 Identities=13% Similarity=0.067 Sum_probs=278.8
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCC-----chHHHHHHHhhcCC-ChhHHHHHHHHHHHHHhhhccccc
Q 006253 94 KSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQW-----PELIGALLSNIHQL-PPHTKQATLETLGYICEEVSSDAV 167 (653)
Q Consensus 94 ~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~-----~~l~~~l~~~l~~~-~~~~~~~~l~~l~~l~~~~~~~~~ 167 (653)
.+.+++.|.++++.+|..++.++..++..... ..+ ..++|.|++.+.++ ++.++..++.+|+.++... ++..
T Consensus 89 i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~-~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~-~~~~ 166 (530)
T 1wa5_B 89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHR-PPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQT 166 (530)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSS-CSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCC-ccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHH
Confidence 46778889999999999999999999865311 122 46889999999987 8999999999999988753 2211
Q ss_pred chhh-HhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q 006253 168 EQDH-VNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAI 246 (653)
Q Consensus 168 ~~~~-~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l 246 (653)
... -...++.++..+. ++++.+|..|+.+|.++....+.... .......++.+..++.+.+++++..++.+|..+
T Consensus 167 -~~~~~~g~i~~Lv~lL~--~~~~~vr~~A~~aL~~l~~~~~~~~~-~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L 242 (530)
T 1wa5_B 167 -KVVVDADAVPLFIQLLY--TGSVEVKEQAIWALGNVAGDSTDYRD-YVLQCNAMEPILGLFNSNKPSLIRTATWTLSNL 242 (530)
T ss_dssp -HHHHHTTCHHHHHHHHH--HCCHHHHHHHHHHHHHHHTTCHHHHH-HHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHH
T ss_pred -HHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHhCCCccchH-HHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 111 1356788888888 67899999999999998753211100 001123577788888888899999999999999
Q ss_pred HHHh-HHhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhh-hhhHHH
Q 006253 247 SSTY-YEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHAL-PVLVPL 324 (653)
Q Consensus 247 ~~~~-~~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~l~~~ 324 (653)
+... +..-......+++.++..+.+.+++++..++..+..++.... .....++ ..++|.
T Consensus 243 ~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~-------------------~~~~~~~~~~~v~~ 303 (530)
T 1wa5_B 243 CRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQ-------------------EAIQAVIDVRIPKR 303 (530)
T ss_dssp HCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCH-------------------HHHHHHHHTTCHHH
T ss_pred hCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCH-------------------HHHHHHHhcCcHHH
Confidence 8754 322233445788888888999899999999999888885311 1112222 256777
Q ss_pred HHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCC---Cch-hchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCC
Q 006253 325 LLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGD---DIV-PLVMPFVEENITKQEWRQREAATYAFGSILEGPSP 400 (653)
Q Consensus 325 l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~---~~~-~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~ 400 (653)
++..+.. .+|.+|..|..+|..++...+. .++ ..+++.+...+.+++|.+|..|+++|+.++.+. .
T Consensus 304 Lv~lL~~---------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~-~ 373 (530)
T 1wa5_B 304 LVELLSH---------ESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGN-T 373 (530)
T ss_dssp HHHGGGC---------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-H
T ss_pred HHHHHCC---------CChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-H
Confidence 8777752 2368899999999888754321 111 246677777888889999999999999999864 3
Q ss_pred CcchHHH-HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccch--HHHHHHHHHhccc-hhhHHHH
Q 006253 401 EKLVPLV-NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNC--QQIISVLLQSMKD-VPNVAEK 476 (653)
Q Consensus 401 ~~~~~~l-~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~--~~il~~l~~~l~d-~~~v~~~ 476 (653)
.....++ ..++|.++..+ .++++.+|..|+|+|++++...... +. ...++ ..+++.|+..+.+ ++.++..
T Consensus 374 ~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~aL~~l~~~~~~~----~~-~~~~l~~~~~l~~L~~ll~~~~~~v~~~ 447 (530)
T 1wa5_B 374 EQIQAVIDANLIPPLVKLL-EVAEYKTKKEACWAISNASSGGLQR----PD-IIRYLVSQGCIKPLCDLLEIADNRIIEV 447 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHH-HHSCHHHHHHHHHHHHHHHHHTTTC----TH-HHHHHHHTTCHHHHHHHTTTCCHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHH-hcCCHHHHHHHHHHHHHHHhcCCCc----HH-HHHHHHHCCCHHHHHHHHhCCCHHHHHH
Confidence 3333333 35788999999 8899999999999999998864210 00 11122 2378888888886 7899999
Q ss_pred HHHHHHHHHhcccCCCC-CCCCCchhHHHH-----HHHHHHhccccccchhchHHHHHHHHHHHHHh
Q 006253 477 ACGALYFLAQGFEDAIS-PSSPLTPFFQEI-----VQALLTVTHREDAGESRLRTAAYETLNEVVRC 537 (653)
Q Consensus 477 a~~al~~~~~~~~~~~~-~~~~l~~~l~~i-----~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~ 537 (653)
++.+|..++........ ......+|...+ ++.|..+....+ ..++..+..+|..+...
T Consensus 448 al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~---~~v~~~a~~il~~~~~~ 511 (530)
T 1wa5_B 448 TLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNEN---DKIYEKAYKIIETYFGE 511 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSC---HHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCC---HHHHHHHHHHHHHHCCc
Confidence 99999999976421000 001245565544 556666655443 56777788877777654
No 29
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.77 E-value=2e-14 Score=161.23 Aligned_cols=587 Identities=11% Similarity=0.117 Sum_probs=344.5
Q ss_pred hHHHHHHHHHHHHHHhh----CcchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhccCCChHHHHH
Q 006253 17 GTVRKQAEESLKQYQEQ----NLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQ 92 (653)
Q Consensus 17 ~~~r~~A~~~L~~~~~~----~~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~ 92 (653)
+-++.+.-+.+..+.+. +||+++..+++.+.+ ++..+..+..+|+...+.-.. -.-..++...+..
T Consensus 114 ~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~---~~~~~~~~L~iL~~L~EEV~~-------~~~~~l~~~r~~~ 183 (1023)
T 4hat_C 114 KNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSS---SVNVCENNMIVLKLLSEEVFD-------FSAEQMTQAKALH 183 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTT---CHHHHHHHHHHHHHHHHHHHT-------SCTTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHH-------hhhccchHHHHHH
Confidence 34555566666655443 578899988888764 344566666666664432100 0001233332222
Q ss_pred H-----------HHHHHHhcCC-CChHHHHHHHHHHHHHHhhhcCCC--CCchHHHHHH-HhhcCCChhHHHHHHHHHHH
Q 006253 93 I-----------KSFILKTLSS-PAHDARSTASQVVAKVAGIELPHK--QWPELIGALL-SNIHQLPPHTKQATLETLGY 157 (653)
Q Consensus 93 i-----------~~~ll~~l~~-~~~~vr~~~~~~l~~ia~~~~~~~--~~~~l~~~l~-~~l~~~~~~~~~~~l~~l~~ 157 (653)
+ .+.+.+.+.+ .++.+...+..+++...... |.+ .-+++++.++ ..+. ++..|..|+.||..
T Consensus 184 lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI-~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~e 260 (1023)
T 4hat_C 184 LKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWI-PYRYIYETNILELLSTKFMT--SPDTRAITLKCLTE 260 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTS-CTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhC-CHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHH
Confidence 2 2333344433 35677777778888776542 211 1157888888 7764 67799999999999
Q ss_pred HHhh-hccc--ccchhhHhHHHHHHHhcc---------------c-CCCCCHHHHHHHHHHHHHHHHhhhhhcCCh-hHH
Q 006253 158 ICEE-VSSD--AVEQDHVNKILTAVVQGM---------------N-ASESNNDVRLAATRALYNALGFAQANFSND-MER 217 (653)
Q Consensus 158 l~~~-~~~~--~~~~~~~~~l~~~l~~~l---------------~-~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~-~~~ 217 (653)
++.. .+++ .. ...+..+++.+++.+ . .++.+.+....-...+..+.+.....+... ...
T Consensus 261 Iv~~~~~~~~~~~-~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~ 339 (1023)
T 4hat_C 261 VSNLKIPQDNDLI-KRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLR 339 (1023)
T ss_dssp HHTSCCCSSCHHH-HHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGH
T ss_pred HHccccCCchHHH-HHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchh
Confidence 9873 2011 12 122232333222111 1 112334544445555555444222222211 112
Q ss_pred H---HHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhH------HhhHHhHHHHHHHHHHHhhcCChh---------H-HH
Q 006253 218 D---YIMRVVCEATLSPEVKIRQAAFECLVAISSTYY------EKLAPYIQDIFNITAKAVREDEEP---------V-AL 278 (653)
Q Consensus 218 ~---~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~------~~~~~~l~~l~~~~~~~~~~~~~~---------~-~~ 278 (653)
. ..+..+......++.++.+.+++.|..+++..+ ..+.|++..+++.+++.++.+++. . |.
T Consensus 340 ~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e 419 (1023)
T 4hat_C 340 ELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVRE 419 (1023)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEEC
T ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHH
Confidence 2 234466666677899999999999999988644 236788889999998887654310 0 00
Q ss_pred -----HHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhh-hhhHHHHHHHhhhccCCccCCCccccHhhhHHHH
Q 006253 279 -----QAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHAL-PVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTC 352 (653)
Q Consensus 279 -----~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~ 352 (653)
...+.+..+-+ + ..++.... ..+++.+...+...-..+ ..+|..|.++..|
T Consensus 420 ~~~d~d~~~~f~~~Rd----~----------------L~~l~~l~~~~~~~~~~~~l~~~l~~~---~~~W~~~EA~~~a 476 (1023)
T 4hat_C 420 FVKESDTIQLYKSERE----V----------------LVYLTHLNVIDTEEIMISKLARQIDGS---EWSWHNINTLSWA 476 (1023)
T ss_dssp SSCCGGGHHHHHHHHH----H----------------HHHHHHHCHHHHHHHHHHHHHHHHSST---TCCHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHH----H----------------HHHHhccCHHHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHH
Confidence 00000000000 0 00010000 122333333332211111 1359999999999
Q ss_pred HHHHHhhcCC----CchhchHHHHHhhhc-----CcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCc
Q 006253 353 LGLVARTVGD----DIVPLVMPFVEENIT-----KQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPN 423 (653)
Q Consensus 353 L~~l~~~~~~----~~~~~l~~~l~~~l~-----~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~ 423 (653)
++.++....+ .++|.+++.+.+... ++...+|.++++.+|..++-.. .-..+++.++..++..+ .+++
T Consensus 477 ~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~--~~~~~L~~vl~~L~~~l-~~~~ 553 (1023)
T 4hat_C 477 IGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLK--AHWNFLRTVILKLFEFM-HETH 553 (1023)
T ss_dssp HHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHH--HCHHHHHHHHHHHHHHT-TCSC
T ss_pred HHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHh-hcCC
Confidence 9999987642 467778887777664 2445678888999998776531 22457889999999999 9999
Q ss_pred hHHHHHHHHHHHHHHhhhccCCC-CccccCccchHHHHHHHHHhccc-hhhHHHHHHHHHHHHHhcccCCCCCCCCCchh
Q 006253 424 NHVKDTTAWTLGRMFEFLHGSTL-ETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPF 501 (653)
Q Consensus 424 ~~vr~~a~~~l~~~~~~~~~~~~-~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~ 501 (653)
++|..+|++++.++++.+..... .++....+|+..++..+...... ++.-+..+..+++.++..... ......+
T Consensus 554 ~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~----~~~~~~~ 629 (1023)
T 4hat_C 554 EGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERS----VAERNRL 629 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCS----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC----HhhHHHH
Confidence 99999999999999998753110 00112356889998888887765 456667889999999987542 1223346
Q ss_pred HHHHHHHHHHhccccc--------c----chhchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHH-------
Q 006253 502 FQEIVQALLTVTHRED--------A----GESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLE------- 562 (653)
Q Consensus 502 l~~i~~~L~~~l~~~~--------~----~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~------- 562 (653)
+..+++.+...++.-. . +........+++++.++...|..|.|++..+++.+++.++..-+
T Consensus 630 l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~~f~~~~~~i~~~~l~~y~~~s~~i~~~~~ 709 (1023)
T 4hat_C 630 LSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRAVSSMISAQVA 709 (1023)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666655544332210 0 01122347889999999999999999999999999888665422
Q ss_pred hhc-CChhHHH--hHHHHHHHHHhHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccCcchhhh-HHHHHHHHHHH
Q 006253 563 AQK-LSSDERE--KQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEE-AMLAIGALAYA 638 (653)
Q Consensus 563 ~~~-~~~~~~~--~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~e~-~~~~~~~l~~~ 638 (653)
... .....+. ....+|..++..+.+.+.... +...+...+++++++.++.-.....+..|+. ++.+++.++.-
T Consensus 710 ~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~---~~~~~~~~~~~~l~~~vl~dY~~~~~~~r~~~vL~l~s~iv~~ 786 (1023)
T 4hat_C 710 AEGLIATKTPKVRGLRTIKKEILKLVETYISKAR---NLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEK 786 (1023)
T ss_dssp HHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCS---CHHHHHHHTHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHH
T ss_pred hCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCC---CHHHHHHHhHHHHHHHHHHHHHhCChhhccHHHHHHHHHHHHH
Confidence 100 0000000 111233334444444444332 2233345578888888888877776778875 56688889999
Q ss_pred hccCCccc-hhhh
Q 006253 639 TGLWRIRY-CLIV 650 (653)
Q Consensus 639 ~~~~f~~y-~~i~ 650 (653)
+|..+.|+ |.|+
T Consensus 787 ~~~~~~~~~~~il 799 (1023)
T 4hat_C 787 VGHMIPQGVILIL 799 (1023)
T ss_dssp HGGGCHHHHHHHH
T ss_pred HHHhhhhhhHHHH
Confidence 99887777 6554
No 30
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.74 E-value=3e-16 Score=166.88 Aligned_cols=407 Identities=11% Similarity=0.098 Sum_probs=279.6
Q ss_pred chHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhccCCChHHHHHHHHHHHHhcCCC-ChHHHHHHHH
Q 006253 36 PGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSP-AHDARSTASQ 114 (653)
Q Consensus 36 ~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~-~~~vr~~~~~ 114 (653)
.+.+..+++.+.++ ++.+|..|+..|++.+...... .+..-....+.+.|++.|.++ ++.+|..++.
T Consensus 86 ~~~i~~lv~~L~s~--~~~~~~~A~~~L~~ll~~~~~~----------~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~ 153 (530)
T 1wa5_B 86 QQELPQMTQQLNSD--DMQEQLSATVKFRQILSREHRP----------PIDVVIQAGVVPRLVEFMRENQPEMLQLEAAW 153 (530)
T ss_dssp -CCHHHHHHHHSCS--SHHHHHHHHHHHHHHTCCSSSC----------SHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC--CHHHHHHHHHHHHHHhCCCCCc----------cHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHH
Confidence 45577777888753 7899999999999987642100 000112234667889999987 7899999999
Q ss_pred HHHHHHhhhcCC-CC--CchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHH
Q 006253 115 VVAKVAGIELPH-KQ--WPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNND 191 (653)
Q Consensus 115 ~l~~ia~~~~~~-~~--~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~ 191 (653)
+++.++...... .. ..+.++.|++.+.++++.+|..++.+|+.++... +..-..-....+++.++..+. +.+..
T Consensus 154 ~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~-~~~~~~~~~~~~l~~L~~ll~--~~~~~ 230 (530)
T 1wa5_B 154 ALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDS-TDYRDYVLQCNAMEPILGLFN--SNKPS 230 (530)
T ss_dssp HHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTCHHHHHHGGG--SCCHH
T ss_pred HHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC-ccchHHHHHcCcHHHHHHHhc--cCCHH
Confidence 999998743110 01 1467899999999999999999999999998753 221100112357888888888 68899
Q ss_pred HHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhHH-HHHHHHHHHhh
Q 006253 192 VRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQ-DIFNITAKAVR 270 (653)
Q Consensus 192 vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~ 270 (653)
++..|+.+|..+........ .......+++.+..++.+++++++..++.+|..++...+......+. .+++.++..+.
T Consensus 231 v~~~a~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~ 309 (530)
T 1wa5_B 231 LIRTATWTLSNLCRGKKPQP-DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLS 309 (530)
T ss_dssp HHHHHHHHHHHHHCCSSSCC-CHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGG
T ss_pred HHHHHHHHHHHHhCCCCCCC-cHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHC
Confidence 99999999999875321111 11122457888888888889999999999999998765554444444 67888888999
Q ss_pred cCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhh-hhhHHHHHHHhhhccCCccCCCccccHhhhH
Q 006253 271 EDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHAL-PVLVPLLLETLLKQEEDQDQDEGAWNIAMAG 349 (653)
Q Consensus 271 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a 349 (653)
+.++.++..++..+..++.... .....++ ..++|.++..|.. ..+.+|..|
T Consensus 310 ~~~~~v~~~a~~~L~~l~~~~~-------------------~~~~~~~~~~~l~~L~~lL~~---------~~~~vr~~A 361 (530)
T 1wa5_B 310 HESTLVQTPALRAVGNIVTGND-------------------LQTQVVINAGVLPALRLLLSS---------PKENIKKEA 361 (530)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCH-------------------HHHHHHHHTTHHHHHHHHTTC---------SCHHHHHHH
T ss_pred CCChhhHHHHHHHHHHHHcCCH-------------------HHHHHHHHcchHHHHHHHHcC---------CCHHHHHHH
Confidence 9999999999999988874210 1111111 2567777777752 137899999
Q ss_pred HHHHHHHHhhcCCC---ch-hchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCC-CcchHHHH--HHHHHHHHHhcCCC
Q 006253 350 GTCLGLVARTVGDD---IV-PLVMPFVEENITKQEWRQREAATYAFGSILEGPSP-EKLVPLVN--IALNFMLTALMQDP 422 (653)
Q Consensus 350 ~~~L~~l~~~~~~~---~~-~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~-~~~~~~l~--~l~~~ll~~l~~d~ 422 (653)
..+|..++...++. ++ ..+++.+...+.++++.+|..++++|+.++.+..+ .....++. .+++.++..+ .++
T Consensus 362 ~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll-~~~ 440 (530)
T 1wa5_B 362 CWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLL-EIA 440 (530)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHT-TTC
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHH-hCC
Confidence 99999988633211 11 23555666667778899999999999999875422 02222232 4789999999 999
Q ss_pred chHHHHHHHHHHHHHHhhhccCCCCccccCccchHHH-----HHHHHHhccc-hhhHHHHHHHHHHHHHhc
Q 006253 423 NNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQI-----ISVLLQSMKD-VPNVAEKACGALYFLAQG 487 (653)
Q Consensus 423 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~i-----l~~l~~~l~d-~~~v~~~a~~al~~~~~~ 487 (653)
++.+|..++++|.++................++...+ ++.+.....+ ++.|+..|..++.++...
T Consensus 441 ~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~ 511 (530)
T 1wa5_B 441 DNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGE 511 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSS
T ss_pred CHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCc
Confidence 9999999999999998865420000000012233332 4455554444 688999999999988765
No 31
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.73 E-value=2.1e-16 Score=168.17 Aligned_cols=413 Identities=13% Similarity=0.113 Sum_probs=268.3
Q ss_pred HHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCc-HHHHHHHHHHHHHHHHHhHHhh
Q 006253 176 LTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPE-VKIRQAAFECLVAISSTYYEKL 254 (653)
Q Consensus 176 ~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~-~~~~~~~~~~l~~l~~~~~~~~ 254 (653)
+|.+++.+. ++++++|..|+.+|..++...............+++.|..++.+++ ++++..++.+|..++...++..
T Consensus 76 l~~lv~~L~--s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 76 LPAMIGGVY--SDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp HHHHHHHHT--SSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 556666676 5679999999999998765322110000111346788888887765 9999999999999998655443
Q ss_pred HHhHH-HHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhcc
Q 006253 255 APYIQ-DIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQE 333 (653)
Q Consensus 255 ~~~l~-~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ 333 (653)
...+. ..++.++..+.+.+++++..|+..+..++..... +...+.. ...+|.++..+...
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~----------------~~~~i~~--~g~l~~Ll~lL~~~- 214 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPK----------------CRDLVLA--NGALLPLLAQLNEH- 214 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHH----------------HHHHHHH--TTCHHHHHHTCCTT-
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChh----------------hHHHHHH--CCcHHHHHHHHhcC-
Confidence 33333 5888899999999999999999999999853211 1111111 13567777766421
Q ss_pred CCccCCCccccHhhhHHHHHHHHHhhcCC---CchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHH-H
Q 006253 334 EDQDQDEGAWNIAMAGGTCLGLVARTVGD---DIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVN-I 409 (653)
Q Consensus 334 ed~~~d~~~~~~r~~a~~~L~~l~~~~~~---~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~-~ 409 (653)
.++.++..+..+|..++...+. .....+++.+...+.++++.++..++++|+.++.+. .......+. .
T Consensus 215 -------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~-~~~~~~~~~~g 286 (528)
T 4b8j_A 215 -------TKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGT-NDKIQAVIEAG 286 (528)
T ss_dssp -------CCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSC-HHHHHHHHHTT
T ss_pred -------CCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHcC
Confidence 2357888999999999876432 234567788888888999999999999999999764 222222222 5
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc--hhhHHHHHHHHHHHHHhc
Q 006253 410 ALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD--VPNVAEKACGALYFLAQG 487 (653)
Q Consensus 410 l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d--~~~v~~~a~~al~~~~~~ 487 (653)
+++.++..+ .++++.+|..|+++|++++...... ...-.-..+++.|+..+.+ ++.++..|+++|.+++..
T Consensus 287 ~v~~Lv~lL-~~~~~~v~~~a~~~L~nl~~~~~~~------~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~ 359 (528)
T 4b8j_A 287 VCPRLVELL-LHPSPSVLIPALRTVGNIVTGDDAQ------TQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG 359 (528)
T ss_dssp CHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHH------HHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHH-cCCChhHHHHHHHHHHHHHcCCHHH------HHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC
Confidence 788999999 9999999999999999998743210 0011113467778887774 588999999999999863
Q ss_pred ccCCCCCCCCCchhH-HHHHHHHHHhccccccchhchHHHHHHHHHHHHHhcccccHHHHH--HHHHHHHHHHHHHHHhh
Q 006253 488 FEDAISPSSPLTPFF-QEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVM--QLVPLIMMELHQTLEAQ 564 (653)
Q Consensus 488 ~~~~~~~~~~l~~~l-~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~l~~~l~~~l~~~~~~~ 564 (653)
.. ......+ ..+++.|+.++...+ ..++..++.+|+.++........+++. ..++.++..+..
T Consensus 360 ~~------~~~~~~~~~~~i~~L~~lL~~~~---~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~----- 425 (528)
T 4b8j_A 360 NK------DQIQAVINAGIIGPLVNLLQTAE---FDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLIC----- 425 (528)
T ss_dssp CH------HHHHHHHHTTCHHHHHHHHHHSC---HHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGC-----
T ss_pred CH------HHHHHHHHCCCHHHHHHHHhcCC---HHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcC-----
Confidence 11 1122222 256788888887653 678899999999999874444444442 345555554432
Q ss_pred cCChhHHHhHHHHHHHHHhHHHHHHHHhCCCcc-hhhHhhHhHHH-----HHHHHHHHHhccCcchhhhHHHHHHHHHHH
Q 006253 565 KLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQ-TKYVFMQYADQ-----MMGLFLRVFAIRSATAHEEAMLAIGALAYA 638 (653)
Q Consensus 565 ~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~-~~~~~~~~~~~-----i~~~l~~~l~~~~~~~~e~~~~~~~~l~~~ 638 (653)
. +. .++..++.++..++........ .++...+|... .++.+....+..+.++++.+..++..+...
T Consensus 426 ---~-d~----~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 426 ---P-DI----RIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMD 497 (528)
T ss_dssp ---S-CH----HHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC-
T ss_pred ---C-CH----HHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 1 22 3555688888888876533100 00002233333 355566666667778889888888876543
Q ss_pred -hccCCccc
Q 006253 639 -TGLWRIRY 646 (653)
Q Consensus 639 -~~~~f~~y 646 (653)
.+.++.++
T Consensus 498 e~~~~~~~~ 506 (528)
T 4b8j_A 498 EEDDTMGAT 506 (528)
T ss_dssp ---------
T ss_pred ccccccccc
Confidence 33444443
No 32
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.73 E-value=1e-13 Score=159.12 Aligned_cols=575 Identities=11% Similarity=0.084 Sum_probs=339.3
Q ss_pred ChHHHHHHHHHHHHHHhh----CcchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhccCCChH---
Q 006253 16 DGTVRKQAEESLKQYQEQ----NLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSS--- 88 (653)
Q Consensus 16 d~~~r~~A~~~L~~~~~~----~~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~--- 88 (653)
++.+|.+.-+.+..+.+. +||+++..|++.+.+ ++..+..+..+|+...+..... ....++..
T Consensus 113 ~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~~---~~~~~~~~l~~L~~l~eev~~~-------~~~~~~~~r~~ 182 (1049)
T 3m1i_C 113 QKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSS---SVNVCENNMIVLKLLSEEVFDF-------SAEQMTQAKAL 182 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHTS-------CTTTSCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHcc---ChHHHHHHHHHHHHHHHHHHHh-------cchhhhhHHHH
Confidence 356788887778776555 588999999988752 4455666666666544221100 00011111
Q ss_pred --------HHHHHHHHHHHhcCC-CChHHHHHHHHHHHHHHhhhcCCC--CCchHHHHHHHhhcCCChhHHHHHHHHHHH
Q 006253 89 --------VKAQIKSFILKTLSS-PAHDARSTASQVVAKVAGIELPHK--QWPELIGALLSNIHQLPPHTKQATLETLGY 157 (653)
Q Consensus 89 --------~~~~i~~~ll~~l~~-~~~~vr~~~~~~l~~ia~~~~~~~--~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~ 157 (653)
....+...+.+++.+ ++..++..+..++....... |.+ ..+.+++.+++.+. .++..+..++.||..
T Consensus 183 ~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi-~~~~~~~~~ll~~l~~~~l-~~~~~~~~a~~~L~~ 260 (1049)
T 3m1i_C 183 HLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWI-PYRYIYETNILELLSTKFM-TSPDTRAITLKCLTE 260 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTS-CTHHHHSSSHHHHHHTHHH-HSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhC-CHHHHhhhhHHHHHHHHhC-CCHhHHHHHHHHHHH
Confidence 122333444445543 34678888888888775532 210 12457777774443 278899999999999
Q ss_pred HHhhhcccc---cchhhHhHHHHHHHhcc----------------cCCCCCHHHHHHHHHHHHHHHHhhhhhcCC----h
Q 006253 158 ICEEVSSDA---VEQDHVNKILTAVVQGM----------------NASESNNDVRLAATRALYNALGFAQANFSN----D 214 (653)
Q Consensus 158 l~~~~~~~~---~~~~~~~~l~~~l~~~l----------------~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~----~ 214 (653)
++..--+.. + ...+..+++.++..+ ...+.+.+.....++.+..++......+.. .
T Consensus 261 i~~~~~~~~~~~~-~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 339 (1049)
T 3m1i_C 261 VSNLKIPQDNDLI-KRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLR 339 (1049)
T ss_dssp HHHCCCCTTCHHH-HHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGH
T ss_pred HHhCCCCcchhhH-HHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhH
Confidence 887521121 2 122333333222211 111345555556666665554432211111 1
Q ss_pred hHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHh------HHhhHHhHHHHHHHHHHHhhcCChh-------------
Q 006253 215 MERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTY------YEKLAPYIQDIFNITAKAVREDEEP------------- 275 (653)
Q Consensus 215 ~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~------~~~~~~~l~~l~~~~~~~~~~~~~~------------- 275 (653)
.....+++.+......++.++...+++.|..+++.. ...+.+++..+++.++..+..+++.
T Consensus 340 ~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~ 419 (1049)
T 3m1i_C 340 ELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVRE 419 (1049)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEEC
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHh
Confidence 122456777777777788899999999999998832 2456788889999888876532110
Q ss_pred ---------HHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccccHh
Q 006253 276 ---------VALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIA 346 (653)
Q Consensus 276 ---------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r 346 (653)
.+..+-+++..++.. .....++.+.+.+-+.+. . ...+|..+
T Consensus 420 ~~~d~d~~~~~~~~~~~L~~l~~~----------------------~~~~~l~~v~~~l~~~l~----~---~~~~W~~~ 470 (1049)
T 3m1i_C 420 FVKESDTIQLYKSEREVLVYLTHL----------------------NVIDTEEIMISKLARQID----G---SEWSWHNI 470 (1049)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHH----------------------CHHHHHHHHHHHHHHHHT----S---SSCCHHHH
T ss_pred hhccchHHHHHHHHHHHHHHHHcc----------------------CHHHHHHHHHHHHHHHhC----C---CCCCHHHH
Confidence 011122222222210 011222223333333222 1 12359999
Q ss_pred hhHHHHHHHHHhhcCC----CchhchHHHHHhhhc-----CcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHH
Q 006253 347 MAGGTCLGLVARTVGD----DIVPLVMPFVEENIT-----KQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTA 417 (653)
Q Consensus 347 ~~a~~~L~~l~~~~~~----~~~~~l~~~l~~~l~-----~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~ 417 (653)
.++..+++.++...++ .+++.+++.+..... ++.+.+|..+++++|..++-... -..++..+++.++..
T Consensus 471 eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~--~~~~l~~vl~~ll~~ 548 (1049)
T 3m1i_C 471 NTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKA--HWNFLRTVILKLFEF 548 (1049)
T ss_dssp HHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHH--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 9999999998876543 346777776655322 24456666788999987754321 246888999999999
Q ss_pred hcCCCchHHHHHHHHHHHHHHhhhccCCC-CccccCccchHHHHHHHHHhccc-hhhHHHHHHHHHHHHHhcccCCCCCC
Q 006253 418 LMQDPNNHVKDTTAWTLGRMFEFLHGSTL-ETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPS 495 (653)
Q Consensus 418 l~~d~~~~vr~~a~~~l~~~~~~~~~~~~-~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~~~~~~~~~~ 495 (653)
+ .|++++|+.+|++++.++++.+..... .++....+|++.++..+...+.. +..-......+++.++...++ .
T Consensus 549 l-~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~----~ 623 (1049)
T 3m1i_C 549 M-HETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERS----V 623 (1049)
T ss_dssp T-TSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCS----H
T ss_pred h-cCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCC----H
Confidence 9 999999999999999999997753100 00112248899999988887764 333446677888888876431 2
Q ss_pred CCCchhHHHHHHHHHHhccc--------ccc--chhchH--HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHH---
Q 006253 496 SPLTPFFQEIVQALLTVTHR--------EDA--GESRLR--TAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQT--- 560 (653)
Q Consensus 496 ~~l~~~l~~i~~~L~~~l~~--------~~~--~~~~~~--~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~--- 560 (653)
....+|+..+++.+...+.. .+. +...++ ...+++++.++...|..|.|++..+++.++..++..
T Consensus 624 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~~~i~~~~l~~~~~~~~~ 703 (1049)
T 3m1i_C 624 AERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRAVSSM 703 (1049)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777766543321 010 011112 355778889999999999998887776665443321
Q ss_pred HHh----h------------------------------cCChhH------HHhHHHH-H------HH-----HHhHHHHH
Q 006253 561 LEA----Q------------------------------KLSSDE------REKQNEI-Q------GL-----LCGCLQVI 588 (653)
Q Consensus 561 ~~~----~------------------------------~~~~~~------~~~~~~l-~------~~-----~~~~i~~i 588 (653)
++. . ....+. ......+ . .. ++.+++.+
T Consensus 704 ~~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~~~~~~~~l~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~l~~~i 783 (1049)
T 3m1i_C 704 ISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTV 783 (1049)
T ss_dssp HHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHSCGGGCCTHHHHHHHHH
T ss_pred HHHHHHccCchhhhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHH
Confidence 000 0 000000 0000001 1 11 67788888
Q ss_pred HHHhCCCcchhhHhhHhHHHHHHHHHHHH----h---ccCcchhhhHHHHHHHHHHHhccCCcc
Q 006253 589 IQKLGSSEQTKYVFMQYADQMMGLFLRVF----A---IRSATAHEEAMLAIGALAYATGLWRIR 645 (653)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~l----~---~~~~~~~e~~~~~~~~l~~~~~~~f~~ 645 (653)
+..+|.. +.||++.+++.+.... + ...+++|++.+..+++++..+...|.+
T Consensus 784 i~~~~~~------~~~~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~f~ll~~i~~~~~~~l~~ 841 (1049)
T 3m1i_C 784 VEKVGHM------IPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLE 841 (1049)
T ss_dssp HHHHGGG------CHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHH
T ss_pred HHHHHHh------hhhhHHHHHHHHHHHHHHHHhcchhhCHHHHHHHHHHHHHHHHhCHHHHHc
Confidence 8888877 8899998888877764 2 235789999999999999887776654
No 33
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.72 E-value=9e-14 Score=155.91 Aligned_cols=573 Identities=10% Similarity=0.062 Sum_probs=337.7
Q ss_pred HHHHHHHhc--CCChHHHHHHHHHHHHHHhh----CcchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhh----
Q 006253 5 VTQILLNAQ--SVDGTVRKQAEESLKQYQEQ----NLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHR---- 74 (653)
Q Consensus 5 l~~ll~~~~--s~d~~~r~~A~~~L~~~~~~----~~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~---- 74 (653)
+..++.... ...+-+|.+.-..+..+... .||+|+..+++.+.+++. +.....+|+-.- ....+.
T Consensus 90 ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~~~----~~~~~~~LriL~-~i~EEv~~~~ 164 (980)
T 3ibv_A 90 VWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAASSQ----SEFSNFYLKVLL-SIGDEIADSL 164 (980)
T ss_dssp HHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHCC----HHHHHHHHHHHH-HHHHHHCCCC
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCCCh----hHHHHHHHHHHH-HhHHHHHhcc
Confidence 445555532 23456888888888876554 589999999999875321 111122222211 100000
Q ss_pred ---HHHh-h---hhccCCChHHHHHHHHHHHHhc----CCCChHHHHHHHHHHHHHHhhhcCCC--CCchHHHHHHHhhc
Q 006253 75 ---KFEL-V---QRWLSLDSSVKAQIKSFILKTL----SSPAHDARSTASQVVAKVAGIELPHK--QWPELIGALLSNIH 141 (653)
Q Consensus 75 ---~~~~-~---~~~~~l~~~~~~~i~~~ll~~l----~~~~~~vr~~~~~~l~~ia~~~~~~~--~~~~l~~~l~~~l~ 141 (653)
.++. . .....+..+....|.+..++.| .+.++.++..+-.+++...... |.+ .-+++++.+++.+.
T Consensus 165 ~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi-~~~~i~~~~ll~~l~~~L~ 243 (980)
T 3ibv_A 165 VLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWI-NINLIVNEPCMNLLYSFLQ 243 (980)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS-CHHHHHCHHHHHHHHHHTT
T ss_pred cccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhc-CHHhhhcchHHHHHHHHcC
Confidence 0000 0 0000011111111222333333 2356677777777777766532 100 01578888998886
Q ss_pred CCChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHH-----HHhcccCCCCCHHHHHHHHHHHHHHHHhhh--hhcC--
Q 006253 142 QLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTA-----VVQGMNASESNNDVRLAATRALYNALGFAQ--ANFS-- 212 (653)
Q Consensus 142 ~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~-----l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~--~~~~-- 212 (653)
+ +..|..|+.||..++..- .. . ..+ ..++.. ++..+..++.+.++.+...+.+..+....- ....
T Consensus 244 ~--~~~r~~A~ecL~ei~~k~-~~-~-~~k-~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~ 317 (980)
T 3ibv_A 244 I--EELRCAACETMTEIVNKK-MK-P-LEK-LNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSE 317 (980)
T ss_dssp S--HHHHHHHHHHHHHHHHSC-CC-H-HHH-HHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC-
T ss_pred C--hHHHHHHHHHHHHHHHcC-CC-h-hhH-HHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccc
Confidence 5 789999999999988764 11 1 111 112221 122222114566766655555544432211 1111
Q ss_pred -Ch-------hHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhH---------HhhHHhHHHHHHHHHHHhhcCCh-
Q 006253 213 -ND-------MERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYY---------EKLAPYIQDIFNITAKAVREDEE- 274 (653)
Q Consensus 213 -~~-------~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~---------~~~~~~l~~l~~~~~~~~~~~~~- 274 (653)
.. .....+++.++..+.+++.++...++..|..++.... ..+.+++..+++.+++.++.+++
T Consensus 318 ~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~ 397 (980)
T 3ibv_A 318 LSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQ 397 (980)
T ss_dssp -CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTC
T ss_pred cchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCcc
Confidence 00 1224578888888888889999999999988876421 33457788888888887763211
Q ss_pred ---------------hHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCC
Q 006253 275 ---------------PVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQD 339 (653)
Q Consensus 275 ---------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d 339 (653)
++|...-.+...++... ...+....+..+.+.+.+.+... .
T Consensus 398 ~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~------------------~~~~l~~~~~~i~~~l~~~l~~~------~ 453 (980)
T 3ibv_A 398 EWDDDPDSEEEAEFQEMRKKLKIFQDTINSID------------------SSLFSSYMYSAITSSLSTAATLS------P 453 (980)
T ss_dssp CCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHC------------------HHHHHHHHHHHHHHHHHHHTTSC------H
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHhcC------------------hHHHHHHHHHHHHHHHHHHhccc------C
Confidence 12211111111111100 00111111112333333333210 0
Q ss_pred CccccHhhhHHHHHHHHHhhcCC---------CchhchHHHHHhhhc-----CcchhhHHHHHHHHHHhhcCCCCCcchH
Q 006253 340 EGAWNIAMAGGTCLGLVARTVGD---------DIVPLVMPFVEENIT-----KQEWRQREAATYAFGSILEGPSPEKLVP 405 (653)
Q Consensus 340 ~~~~~~r~~a~~~L~~l~~~~~~---------~~~~~l~~~l~~~l~-----~~~~~~r~aal~~l~~i~~~~~~~~~~~ 405 (653)
...|..+.+|.-+|..+++.+.. ..+|.+++++...+. ++++.+|.+++..+|..++-... -..
T Consensus 454 ~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~--~~~ 531 (980)
T 3ibv_A 454 ENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY--ESA 531 (980)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT--CCT
T ss_pred CCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc--Cch
Confidence 13599999999999999997653 457778888877655 56789999999999998875421 235
Q ss_pred HHHHHHHHHHH--HhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc--hh----------
Q 006253 406 LVNIALNFMLT--ALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD--VP---------- 471 (653)
Q Consensus 406 ~l~~l~~~ll~--~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d--~~---------- 471 (653)
+++.+++.++. ++ .+++++||.+|++++.++++.+.. ...+|+..++..+...+.- .+
T Consensus 532 ~l~~~L~~ll~~~gl-~~~~~~V~~~a~~af~~f~~~~~~-------~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~ 603 (980)
T 3ibv_A 532 AIPALIEYFVGPRGI-HNTNERVRPRAWYLFYRFVKSIKK-------QVVNYTESSLAMLGDLLNISVSPVTDMDAPVPT 603 (980)
T ss_dssp THHHHHHHHTSTTTT-TCCCTTTHHHHHHHHHHHHHHTTT-------TCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCC
T ss_pred hHHHHHHHHhccccc-cCCChhHHHHHHHHHHHHHHHhhH-------HhhhHHHHHHHHHHHhhcCcCCCCCcccccccc
Confidence 78888899988 88 899999999999999999999864 3568888888877666541 00
Q ss_pred ----------hHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHH----hccccccc-hhchH-HHHHHHHHHHH
Q 006253 472 ----------NVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLT----VTHREDAG-ESRLR-TAAYETLNEVV 535 (653)
Q Consensus 472 ----------~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~----~l~~~~~~-~~~~~-~~~~~~l~~l~ 535 (653)
.-+.....+++.++...+. +.+....|+..+++.++. .++....+ +...+ ...+.+++.++
T Consensus 604 ~~~~~~~~~~~~ql~L~eaig~li~~~~~---~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~la 680 (980)
T 3ibv_A 604 LNSSIRNSDFNSQLYLFETVGVLISSGNL---TPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFA 680 (980)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHHHHHHSCC---CHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCCchHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHh
Confidence 1356677888888876431 112233466666665544 34322210 11111 25677888888
Q ss_pred Hhcccc------cHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHhHHHHHHHHhCCCcchhhHhhHhHHHH
Q 006253 536 RCSTDE------TAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQM 609 (653)
Q Consensus 536 ~~~~~~------~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~i 609 (653)
+..... +...+.+.++.++..+... ..+ ..+|..+..++..++..+|.. +.|+++++
T Consensus 681 kgf~~~~~~~~p~~~~f~~~~~~il~~l~~~-------~~~----~~irea~~~~~~r~i~~lg~~------~~p~lp~~ 743 (980)
T 3ibv_A 681 KGFPARGSEEVAWLASFNKASDEIFLILDRM-------GFN----EDIRGAVRFTSGRIINVVGPD------MLPKVPQL 743 (980)
T ss_dssp HTSCSCC-CCCSHHHHHHHHHHHHHHHHHHS-------CCS----HHHHHHHHHHHHHHTTTTHHH------HTTTHHHH
T ss_pred ccCCcccCCCCcHHHHHHHHHHHHHHHHHhc-------CCc----HHHHHHHHHHHHHHHHHccHh------HHHHHHHH
Confidence 866431 3445666666666655542 112 247778889999999999988 99999999
Q ss_pred HHHHHHHHhccCcchhhhHHHHHHHHHHHhccCCccc
Q 006253 610 MGLFLRVFAIRSATAHEEAMLAIGALAYATGLWRIRY 646 (653)
Q Consensus 610 ~~~l~~~l~~~~~~~~e~~~~~~~~l~~~~~~~f~~y 646 (653)
++.++..++ ..-.-+.+..+|.++..+|.++.|+
T Consensus 744 i~~ll~~~~---~~e~~~fL~l~~qli~~f~~~~~~~ 777 (980)
T 3ibv_A 744 ISILLNSID---MNELVDVLSFISQLIHIYKDNMMEI 777 (980)
T ss_dssp HHHHHHHCC---TTTHHHHHHHHHHHHHHTTTTSHHH
T ss_pred HHHHHhcCC---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998885443 2223567889999999999997776
No 34
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.71 E-value=5.6e-14 Score=151.00 Aligned_cols=476 Identities=11% Similarity=0.055 Sum_probs=289.0
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 006253 41 SLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVA 120 (653)
Q Consensus 41 ~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia 120 (653)
..++.+.+ .+...|+++-.++..+.+. .++....+.+.+.+-|.++++.+|..|..+++.++
T Consensus 74 ~vik~~~s--~~~~~Krl~Yl~~~~~~~~----------------~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~ 135 (618)
T 1w63_A 74 ECLKLIAS--QKFTDKRIGYLGAMLLLDE----------------RQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG 135 (618)
T ss_dssp HHHHHHHS--SSHHHHHHHHHHHHHHCCC----------------CHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC
T ss_pred HHHHHHcC--CchHHHHHHHHHHHHHhCC----------------CcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC
Confidence 33344442 3566777776666665542 35555667788999999999999999999999997
Q ss_pred hhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHH
Q 006253 121 GIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRAL 200 (653)
Q Consensus 121 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l 200 (653)
..+ ..+.+++.+..++.+.++.+|..|+.++..+.... |+.+ ..+++.+...+. |.++.|+..|+.++
T Consensus 136 ~~~----~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~-p~~v-----~~~~~~l~~lL~--D~d~~V~~~Al~~L 203 (618)
T 1w63_A 136 SSE----MCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKV-PELM-----EMFLPATKNLLN--EKNHGVLHTSVVLL 203 (618)
T ss_dssp CHH----HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC-GGGG-----GGGGGGTTTSTT--CCCHHHHHHHHHHH
T ss_pred CHH----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC-hHHH-----HHHHHHHHHHhC--CCCHhHHHHHHHHH
Confidence 432 34678999999999999999999999999999876 6644 345666667777 88999999999999
Q ss_pred HHHHHhhhhh---cCChhHHHHHHHHHHhhhc-----------CCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHH
Q 006253 201 YNALGFAQAN---FSNDMERDYIMRVVCEATL-----------SPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITA 266 (653)
Q Consensus 201 ~~~~~~~~~~---~~~~~~~~~il~~l~~~~~-----------~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~ 266 (653)
..+...-++. +. ...+.++..+..... ..++-.+..++++|..+....++.- ..+..+++.++
T Consensus 204 ~~i~~~~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~-~~~~~~L~~l~ 280 (618)
T 1w63_A 204 TEMCERSPDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSS-EAMNDILAQVA 280 (618)
T ss_dssp HHHCCSHHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHH-HTTHHHHHHHH
T ss_pred HHHHHhChHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHHH
Confidence 9865432210 00 001223333333211 2356666678888887776543321 11122222222
Q ss_pred HHh---hcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccc
Q 006253 267 KAV---REDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAW 343 (653)
Q Consensus 267 ~~~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~ 343 (653)
+.. ++.+..+...|+.++..+... .... ...++.+...+.. . +.
T Consensus 281 ~~~~~~~~~~~aV~~ea~~~i~~l~~~--------------------~~l~----~~a~~~L~~~L~~--~-------d~ 327 (618)
T 1w63_A 281 TNTETSKNVGNAILYETVLTIMDIKSE--------------------SGLR----VLAINILGRFLLN--N-------DK 327 (618)
T ss_dssp HTSCCSSTHHHHHHHHHHHHHHHSCCC--------------------HHHH----HHHHHHHHHHHTC--S-------ST
T ss_pred hccccccchHHHHHHHHHHHHHhcCCC--------------------HHHH----HHHHHHHHHHHhC--C-------CC
Confidence 211 112334555555554443210 0111 1233444444431 1 13
Q ss_pred cHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCc
Q 006253 344 NIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPN 423 (653)
Q Consensus 344 ~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~ 423 (653)
.+|..|..+|..++...++.+ ....+.+...+.|++..+|..++.++..++... .+ ..+++.++..+ .+.+
T Consensus 328 ~vr~~aL~~L~~i~~~~p~~~-~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~---nv----~~iv~eL~~~l-~~~d 398 (618)
T 1w63_A 328 NIRYVALTSLLKTVQTDHNAV-QRHRSTIVDCLKDLDVSIKRRAMELSFALVNGN---NI----RGMMKELLYFL-DSCE 398 (618)
T ss_dssp TTHHHHHHHHHHHHHHHHHHH-GGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSS---ST----HHHHHHHHHHH-HHCC
T ss_pred chHHHHHHHHHHHHhhCHHHH-HHHHHHHHHHccCCChhHHHHHHHHHHHHcccc---cH----HHHHHHHHHHH-HhCC
Confidence 689999999999998755433 334456667788999999999999999998752 23 34556666677 7788
Q ss_pred hHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc-hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhH
Q 006253 424 NHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFF 502 (653)
Q Consensus 424 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l 502 (653)
..+|..+..++++++..+. +.....++.+++.+.+ ...++..+..++..++.... .+.
T Consensus 399 ~e~r~~~v~~I~~la~k~~-----------~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p-------~l~--- 457 (618)
T 1w63_A 399 PEFKADCASGIFLAAEKYA-----------PSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSV-------EMH--- 457 (618)
T ss_dssp HHHHHHHHHHHHHHHHSSC-----------CCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSC-------STH---
T ss_pred HHHHHHHHHHHHHHHHHhC-----------ccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcCh-------hHH---
Confidence 9999999999999998764 2334556666666664 34455666777777776521 232
Q ss_pred HHHHHHHHHhccccccchhchHHHHHHHHHHHHHhccc---------ccHHHHHHHHHHHHHHHHHHHHhhcCChhHHHh
Q 006253 503 QEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTD---------ETAPMVMQLVPLIMMELHQTLEAQKLSSDEREK 573 (653)
Q Consensus 503 ~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~---------~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ 573 (653)
..++..|...+.+....+... ..++.++|........ ...| ..+. ..+.+.++.. .++
T Consensus 458 ~~~v~~L~~~l~~~~~~~~~~-~~~~wilGEy~~~i~~~~~~~~~~~~~~~--~~~~----~~l~~~l~~~---~~~--- 524 (618)
T 1w63_A 458 AYTVQRLYKAILGDYSQQPLV-QVAAWCIGEYGDLLVSGQCEEEEPIQVTE--DEVL----DILESVLISN---MST--- 524 (618)
T ss_dssp HHHHHHHHHHHHHCCSCSHHH-HHHHHHHHHHHHHHTTCCCSSSCCCCCCH--HHHH----HHHHHHHHST---TCC---
T ss_pred HHHHHHHHHHHhcccccHHHH-HHHHHHHhhhHHHhcccccccccccCCCH--HHHH----HHHHHHHhcc---CCC---
Confidence 344555655555321112333 4688999988765432 1111 1112 2222222111 011
Q ss_pred HHHHHHHHHhHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccCcchhhhHHHHHHHHH
Q 006253 574 QNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALA 636 (653)
Q Consensus 574 ~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~e~~~~~~~~l~ 636 (653)
..+|..++.++..+....++ ..+.+..++. ....+.+.++|+.|...+.-+.
T Consensus 525 -~~vr~~~lta~~Kl~~~~~~-------~~~~l~~~L~---~~~~~~d~evrdRA~~y~~ll~ 576 (618)
T 1w63_A 525 -SVTRGYALTAIMKLSTRFTC-------TVNRIKKVVS---IYGSSIDVELQQRAVEYNALFK 576 (618)
T ss_dssp -HHHHHHHHHHHHHHHTTCSS-------CHHHHHHHHH---HHTTCSCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHhCcc-------hHHHHHHHHH---HhcCCCCHHHHHHHHHHHHHHc
Confidence 14566677777777765442 2333334333 3345567789999988776654
No 35
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.70 E-value=1.1e-14 Score=160.69 Aligned_cols=483 Identities=11% Similarity=0.073 Sum_probs=298.9
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhHh
Q 006253 94 KSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVN 173 (653)
Q Consensus 94 ~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~ 173 (653)
...+++.|.+++..+|..++..+......... ...++.|...+.++++.+|+.|+.+|..++........ .....
T Consensus 117 i~~lv~~L~~~~~~~r~~a~~~l~~~~~~~i~----~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~-i~~~~ 191 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHAVVNLINYQDDAELA----TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHA-IMRSP 191 (780)
T ss_dssp ---------CCSCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHH-HTTCH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHhhhHHHHH----hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHH-HHhcc
Confidence 35788888999989999999988876544322 46677778888888999999999999999875421110 01123
Q ss_pred HHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHh
Q 006253 174 KILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEK 253 (653)
Q Consensus 174 ~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 253 (653)
.+++.++..+.+ +.++++|..|+.+|..+... .++ .........++.|..+++++++.++..++.+|..++...+..
T Consensus 192 ~~i~~Lv~~L~~-~~d~~vr~~Aa~aL~~Ls~~-~~~-~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~ 268 (780)
T 2z6g_A 192 QMVSAIVRTMQN-TNDVETARCTSGTLHNLSHH-REG-LLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGA 268 (780)
T ss_dssp HHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHTS-HHH-HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTH
T ss_pred ChHHHHHHHHcC-CCCHHHHHHHHHHHHHHhCC-chh-HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhh
Confidence 678888888864 45899999999999985432 211 000111347888888998889999999999999999875543
Q ss_pred hHHhH-HHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhc
Q 006253 254 LAPYI-QDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQ 332 (653)
Q Consensus 254 ~~~~l-~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~ 332 (653)
..... ...++.++..+.+.+..++..+...+..++....+. ...+.. ...++.++..+...
T Consensus 269 ~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~---------------~~~i~~---~~~i~~Lv~lL~~~ 330 (780)
T 2z6g_A 269 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES---------------KLIILA---SGGPQALVNIMRTY 330 (780)
T ss_dssp HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH---------------HHHHHT---TTHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHH---------------HHHHHH---cCCHHHHHHHHhcC
Confidence 33333 368888999998888888887776666555210000 001111 13456666655421
Q ss_pred cCCccCCCccccHhhhHHHHHHHHHhhcC--CCc-hhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHH
Q 006253 333 EEDQDQDEGAWNIAMAGGTCLGLVARTVG--DDI-VPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNI 409 (653)
Q Consensus 333 ~ed~~~d~~~~~~r~~a~~~L~~l~~~~~--~~~-~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~ 409 (653)
+ ....+..+..+|..++.... ..+ -.-.++.+...+.+++...+..++++++.++....... ....
T Consensus 331 ~--------~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~---~~~~ 399 (780)
T 2z6g_A 331 T--------YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEG 399 (780)
T ss_dssp C--------CHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCS---CCHH
T ss_pred C--------HHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhh---hhhh
Confidence 1 11344567777887775321 111 12346677778888888889999999999987653211 1356
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc--h-hhHHHHHHHHHHHHHh
Q 006253 410 ALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD--V-PNVAEKACGALYFLAQ 486 (653)
Q Consensus 410 l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d--~-~~v~~~a~~al~~~~~ 486 (653)
+++.++..+ +++++.+|..|+++|++++...... ...-.-...++.|++.+.+ + ..++..|+.+|.+++.
T Consensus 400 ~i~~Lv~lL-~~~d~~vr~~A~~aL~~L~~~~~~~------~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~ 472 (780)
T 2z6g_A 400 LLGTLVQLL-GSDDINVVTCAAGILSNLTCNNYKN------KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 472 (780)
T ss_dssp HHHHHHHHT-TCSCHHHHHHHHHHHHHHTSSCHHH------HHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHHHHHHhCCHHH------HHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 789999999 9999999999999999997643110 0000112356777777764 2 3899999999999975
Q ss_pred cccCCCCCCCCCc-h-hHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHHHHh
Q 006253 487 GFEDAISPSSPLT-P-FFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMV-MQLVPLIMMELHQTLEA 563 (653)
Q Consensus 487 ~~~~~~~~~~~l~-~-~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~ 563 (653)
...+ ..... . .-...++.|++++...+ ...++..++.+|+.++.... ....+. ..++|.+++.+...-..
T Consensus 473 ~~~~----~~~~~~~v~~~~~l~~L~~lL~~~~--~~~v~~~A~~aL~nLa~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~ 545 (780)
T 2z6g_A 473 RHQD----AEMAQNAVRLHYGLPVVVKLLHPPS--HWPLIKATVGLIRNLALCPA-NHAPLREQGAIPRLVQLLVRAHQD 545 (780)
T ss_dssp SSTT----HHHHHHHHHHTTCHHHHHHTTSTTC--CHHHHHHHHHHHHHHHSSHH-HHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred cCch----HHHHHHHHHHcCCHHHHHHHhcCCC--hHHHHHHHHHHHHHHhcCHH-HHHHHHHCCCHHHHHHHHHhcchh
Confidence 3110 00000 0 11244778888887664 24788899999999985322 111121 13566666666542100
Q ss_pred -h-----------cCChhHHHhHHHHHHHHHhHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccCcchhhhHHHH
Q 006253 564 -Q-----------KLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLA 631 (653)
Q Consensus 564 -~-----------~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~e~~~~~ 631 (653)
. ...... ...++..++.+++.++.. . .++..+. -..+++.++..+...+..++..+..+
T Consensus 546 ~~~~aa~al~nq~~~~~~~---~~~v~~~a~~aL~~La~~---~-~~~~~l~--~~~~i~~Lv~lL~~~~~~v~~~a~~a 616 (780)
T 2z6g_A 546 TQRRTSMGGTQQQFVEGVR---MEEIVEACTGALHILARD---I-HNRIVIR--GLNTIPLFVQLLYSPIENIQRVAAGV 616 (780)
T ss_dssp HHHTTC------CCSTTCC---HHHHHHHHHHHHHHHTTS---H-HHHHHHH--HTCCHHHHHHGGGCSCHHHHHHHHHH
T ss_pred HHHHHhhccccchhhcccC---hHHHHHHHHHHHHHHhcC---h-hhHHHHH--HCCcHHHHHHHHcCCCHHHHHHHHHH
Confidence 0 000000 123555677777777531 1 1111111 12467788888888888899998888
Q ss_pred HHHHH
Q 006253 632 IGALA 636 (653)
Q Consensus 632 ~~~l~ 636 (653)
++.++
T Consensus 617 L~~L~ 621 (780)
T 2z6g_A 617 LCELA 621 (780)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88875
No 36
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.69 E-value=7.5e-16 Score=144.52 Aligned_cols=213 Identities=15% Similarity=0.235 Sum_probs=170.7
Q ss_pred CchhchHHHHHhhhcCcchhhHHHHHHHHHH-hhcCCCCCcc--hHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh
Q 006253 363 DIVPLVMPFVEENITKQEWRQREAATYAFGS-ILEGPSPEKL--VPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFE 439 (653)
Q Consensus 363 ~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~-i~~~~~~~~~--~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~ 439 (653)
++++.+=+-+.+.+.+++|+.|.+|+..++. +++++. ... ...+..++..+.+.+.+|.|+.||..|+.+++.+++
T Consensus 12 ~i~~kl~~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~-~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~ 90 (249)
T 2qk1_A 12 TILDKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTK-KLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICD 90 (249)
T ss_dssp CCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHTGGGCC-CBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred hhhhhCChhHHHHhhcCCHHHHHHHHHHHHHHHHhcCC-ccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 3444444455677889999999999999999 987753 322 222346677777777459999999999999999999
Q ss_pred hhc-cCCCCccccCc-cchHHHHHHHHHhccc-hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhcccc
Q 006253 440 FLH-GSTLETPIINQ-GNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHRE 516 (653)
Q Consensus 440 ~~~-~~~~~~~~~~~-~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~ 516 (653)
.+. . ... +|...++|.+++.+.| .+.|+.++..++..+++.+. +....+|++.+++.|+..+++.
T Consensus 91 ~l~~~-------~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~-----~~~~~~~l~~ll~~l~~~l~~k 158 (249)
T 2qk1_A 91 KLKTP-------GFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYD-----PLASSGRNEDMLKDILEHMKHK 158 (249)
T ss_dssp HHCTT-------TSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSC-----TTCTTCTTHHHHHHHHHHTTCS
T ss_pred hcccc-------cccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcc-----ccccCCcHHHHHHHHHHHHcCC
Confidence 886 3 256 8999999999999998 68899999999999999864 2233345999999999999766
Q ss_pred ccchhchHHHHHHHHHHHHHhccc---ccHHHH-HHHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHhHHHHHHHHh
Q 006253 517 DAGESRLRTAAYETLNEVVRCSTD---ETAPMV-MQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKL 592 (653)
Q Consensus 517 ~~~~~~~~~~~~~~l~~l~~~~~~---~~~~~~-~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~ 592 (653)
. ..+|..++.+|+.++...+. .+.+|+ ..++|.+.+.+.+ .++ .+|..+++|++.++..+
T Consensus 159 ~---~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D---------~~~----~VR~aA~~~l~~i~~~v 222 (249)
T 2qk1_A 159 T---PQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVND---------TQP----AIRTIGFESFAILIKIF 222 (249)
T ss_dssp S---HHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTC---------SSH----HHHHHHHHHHHHHHHHH
T ss_pred C---hHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcC---------CCH----HHHHHHHHHHHHHHHHh
Confidence 4 68999999999999999884 477888 8888888877653 232 58899999999999999
Q ss_pred CCCcchhhHhhHhHHHH
Q 006253 593 GSSEQTKYVFMQYADQM 609 (653)
Q Consensus 593 ~~~~~~~~~~~~~~~~i 609 (653)
|+.. |.||++.+
T Consensus 223 G~~~-----~~p~l~~L 234 (249)
T 2qk1_A 223 GMNT-----FVKTLEHL 234 (249)
T ss_dssp CSGG-----GHHHHHHS
T ss_pred CHHH-----HHHHHHHH
Confidence 9975 88888875
No 37
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.69 E-value=4.9e-14 Score=149.78 Aligned_cols=392 Identities=13% Similarity=0.102 Sum_probs=277.3
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHhhCc---------chHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhh
Q 006253 3 AEVTQILLNAQSVDGTVRKQAEESLKQYQEQNL---------PGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQH 73 (653)
Q Consensus 3 ~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~~---------~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~ 73 (653)
+.+..+++.+.++|+++|..|...|..+...+. .+.+..|++.+.++ .++.+|..|+..|.+........
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~-~~~~v~~~A~~~L~~l~~~~~~~ 152 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTRE-DFPQLQFEAAWALTNIASGTSEN 152 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCT-TCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCC-CCHHHHHHHHHHHHHHhCCCHHH
Confidence 347788999999999999999999988754321 25788888998863 34899999999999977632211
Q ss_pred hHHHhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCC-C--CCchHHHHHHHhh-cCCChhHHH
Q 006253 74 RKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPH-K--QWPELIGALLSNI-HQLPPHTKQ 149 (653)
Q Consensus 74 ~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~-~--~~~~l~~~l~~~l-~~~~~~~~~ 149 (653)
.. .-......+.|++.|.++++.+|..++.+++.++...... . .-...++.|+..+ .+.++.++.
T Consensus 153 ~~-----------~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~ 221 (528)
T 4b8j_A 153 TK-----------VVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLR 221 (528)
T ss_dssp HH-----------HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHH
T ss_pred HH-----------HHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHH
Confidence 00 0011235678889999999999999999999998642110 0 0135788889998 667899999
Q ss_pred HHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhc
Q 006253 150 ATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATL 229 (653)
Q Consensus 150 ~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~ 229 (653)
.++.+|..++... +..- ......+++.+...+. +.+++++..|+.+|..+......... ......+++.+..++.
T Consensus 222 ~a~~~L~~L~~~~-~~~~-~~~~~~~l~~L~~lL~--~~~~~v~~~a~~aL~~l~~~~~~~~~-~~~~~g~v~~Lv~lL~ 296 (528)
T 4b8j_A 222 NATWTLSNFCRGK-PQPS-FEQTRPALPALARLIH--SNDEEVLTDACWALSYLSDGTNDKIQ-AVIEAGVCPRLVELLL 296 (528)
T ss_dssp HHHHHHHHHHCSS-SCCC-HHHHTTHHHHHHHHTT--CCCHHHHHHHHHHHHHHTSSCHHHHH-HHHHTTCHHHHHHHTT
T ss_pred HHHHHHHHHHcCC-CCCc-HHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHcCCHHHHH-HHHHcCHHHHHHHHHc
Confidence 9999999999875 3322 3456778999999998 68899999999999987643221100 0001236778888888
Q ss_pred CCcHHHHHHHHHHHHHHHHHhHHhhHHhH-HHHHHHHHHHhhcC-ChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCC
Q 006253 230 SPEVKIRQAAFECLVAISSTYYEKLAPYI-QDIFNITAKAVRED-EEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSD 307 (653)
Q Consensus 230 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~l-~~l~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (653)
++++.++..++.+|+.++...+......+ ..+++.++..+.+. ++.++..|+..+..++....
T Consensus 297 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~--------------- 361 (528)
T 4b8j_A 297 HPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNK--------------- 361 (528)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCH---------------
T ss_pred CCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCH---------------
Confidence 88999999999999999875554443333 25788888888888 89999999998888875210
Q ss_pred CchhhHHHhhh-hhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCCch-----hchHHHHHhhhcCcch
Q 006253 308 IPCFYFIKHAL-PVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIV-----PLVMPFVEENITKQEW 381 (653)
Q Consensus 308 ~~~~~~~~~~l-~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~-----~~l~~~l~~~l~~~~~ 381 (653)
......+ ..++|.++..+... +..+|..|..+|..++........ ..+++.+...+.++++
T Consensus 362 ----~~~~~~~~~~~i~~L~~lL~~~---------~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~ 428 (528)
T 4b8j_A 362 ----DQIQAVINAGIIGPLVNLLQTA---------EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDI 428 (528)
T ss_dssp ----HHHHHHHHTTCHHHHHHHHHHS---------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCH
T ss_pred ----HHHHHHHHCCCHHHHHHHHhcC---------CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCH
Confidence 1111111 25677777777532 246889999999999876322211 2456677778888999
Q ss_pred hhHHHHHHHHHHhhcCCC---------CCcchHHHH--HHHHHHHHHhcCCCchHHHHHHHHHHHHHHhh
Q 006253 382 RQREAATYAFGSILEGPS---------PEKLVPLVN--IALNFMLTALMQDPNNHVKDTTAWTLGRMFEF 440 (653)
Q Consensus 382 ~~r~aal~~l~~i~~~~~---------~~~~~~~l~--~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~ 440 (653)
.++..++.+|+.+..... .......+. ..++.+.... +++++.++..|.+++.++...
T Consensus 429 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~-~~~~~~v~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 429 RIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQ-SHDNNEIYEKAVKILEAYWMD 497 (528)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGG-GCSSHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHH-cCCCHHHHHHHHHHHHHHCCC
Confidence 999999999999875321 011222222 2356666666 889999999999999988654
No 38
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.68 E-value=1.2e-13 Score=148.59 Aligned_cols=448 Identities=14% Similarity=0.101 Sum_probs=271.2
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhhCcchHHHH----HHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhh
Q 006253 5 VTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLS----LAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQ 80 (653)
Q Consensus 5 l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~----l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~ 80 (653)
+.++++.+.++|-+.|+-+.-.+..+...+ ++.... +.+-+. +.++.+|.+|+..+.+...
T Consensus 72 ~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~-~e~~~l~in~l~kDL~--~~n~~vr~lAL~~L~~i~~------------ 136 (618)
T 1w63_A 72 QLECLKLIASQKFTDKRIGYLGAMLLLDER-QDVHLLMTNCIKNDLN--HSTQFVQGLALCTLGCMGS------------ 136 (618)
T ss_dssp HHHHHHHHHSSSHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHS--CSSSHHHHHHHHHHHHHCC------------
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhcC--CCCHhHHHHHHHHHHhcCC------------
Confidence 456666677888888888888888776544 443333 333333 4578899999998888553
Q ss_pred hccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHh
Q 006253 81 RWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICE 160 (653)
Q Consensus 81 ~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~ 160 (653)
++..+.+.+.+.+++.++++.||+.|+.+++.++... | ...+.+++.+...+.+.++.++..|+.+|..++.
T Consensus 137 ------~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~-p-~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~ 208 (618)
T 1w63_A 137 ------SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKV-P-ELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCE 208 (618)
T ss_dssp ------HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC-G-GGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCC
T ss_pred ------HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC-h-HHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHH
Confidence 2344567788889999999999999999999999875 5 2456778888888999999999999999999887
Q ss_pred hhcccccchhhHhHHHHHHHhcccC-------------CCCCHHHHHHHHHHHHHHHHhhhh-----------h------
Q 006253 161 EVSSDAVEQDHVNKILTAVVQGMNA-------------SESNNDVRLAATRALYNALGFAQA-----------N------ 210 (653)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~l~~~l~~-------------~~~~~~vr~~a~~~l~~~~~~~~~-----------~------ 210 (653)
.. ++.. .++..++|.+...+.+ ...++-.+...++++..+...-+. .
T Consensus 209 ~~-~~~~--~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~ 285 (618)
T 1w63_A 209 RS-PDML--AHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTET 285 (618)
T ss_dssp SH-HHHH--HHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCC
T ss_pred hC-hHHH--HHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccc
Confidence 54 3311 1222333333322210 013455555555555543321000 0
Q ss_pred ------------------cC-ChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhc
Q 006253 211 ------------------FS-NDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVRE 271 (653)
Q Consensus 211 ------------------~~-~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~ 271 (653)
.. ....+....+.+..++.+.++++|..++..|..++...+..+.++...+ +..+.+
T Consensus 286 ~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i----~~~l~d 361 (618)
T 1w63_A 286 SKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTI----VDCLKD 361 (618)
T ss_dssp SSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHH----HHGGGS
T ss_pred ccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHH----HHHccC
Confidence 00 0001112345555666777889999999999999998887766665554 456778
Q ss_pred CChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHH
Q 006253 272 DEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGT 351 (653)
Q Consensus 272 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~ 351 (653)
++..+|..+++.+..++... + +..+++.+...+.. .| ..+|..+..
T Consensus 362 ~d~~Ir~~alelL~~l~~~~--------------------n-----v~~iv~eL~~~l~~--~d-------~e~r~~~v~ 407 (618)
T 1w63_A 362 LDVSIKRRAMELSFALVNGN--------------------N-----IRGMMKELLYFLDS--CE-------PEFKADCAS 407 (618)
T ss_dssp SCHHHHHHHHHHHHHHCCSS--------------------S-----THHHHHHHHHHHHH--CC-------HHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHcccc--------------------c-----HHHHHHHHHHHHHh--CC-------HHHHHHHHH
Confidence 89999999999988887521 1 12344455554442 11 257889999
Q ss_pred HHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCC--CchHHHHH
Q 006253 352 CLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQD--PNNHVKDT 429 (653)
Q Consensus 352 ~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d--~~~~vr~~ 429 (653)
+++.++..++... ...++.+.+.+.+....++..++..+..+.... ++.... .++.+...+ .+ .+..+...
T Consensus 408 ~I~~la~k~~~~~-~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~-p~l~~~----~v~~L~~~l-~~~~~~~~~~~~ 480 (618)
T 1w63_A 408 GIFLAAEKYAPSK-RWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNS-VEMHAY----TVQRLYKAI-LGDYSQQPLVQV 480 (618)
T ss_dssp HHHHHHHSSCCCH-HHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHS-CSTHHH----HHHHHHHHH-HHCCSCSHHHHH
T ss_pred HHHHHHHHhCccH-HHHHHHHHHHHHhccchhHHHHHHHHHHHHhcC-hhHHHH----HHHHHHHHH-hcccccHHHHHH
Confidence 9999998775332 233444444454443345555666666665532 232222 334444444 32 23344557
Q ss_pred HHHHHHHHHhhhccCCCC--cc-ccCccchHHHHHHHHHhccchhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHH
Q 006253 430 TAWTLGRMFEFLHGSTLE--TP-IINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIV 506 (653)
Q Consensus 430 a~~~l~~~~~~~~~~~~~--~~-~~~~~~~~~il~~l~~~l~d~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~ 506 (653)
++|++|.++....+...+ .| .........++..++.....++.+|..+..|+..+.-... ...+. +
T Consensus 481 ~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~-------~~~~~----l 549 (618)
T 1w63_A 481 AAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFT-------CTVNR----I 549 (618)
T ss_dssp HHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCS-------SCHHH----H
T ss_pred HHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCc-------chHHH----H
Confidence 999999999877431000 00 0011112223333333223368899999999988876431 12233 3
Q ss_pred HHHHHhccccccchhchHHHHHHHHHHHHH
Q 006253 507 QALLTVTHREDAGESRLRTAAYETLNEVVR 536 (653)
Q Consensus 507 ~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~ 536 (653)
..++....... +..+|..|.+.+..+..
T Consensus 550 ~~~L~~~~~~~--d~evrdRA~~y~~ll~~ 577 (618)
T 1w63_A 550 KKVVSIYGSSI--DVELQQRAVEYNALFKK 577 (618)
T ss_dssp HHHHHHHTTCS--CHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCC--CHHHHHHHHHHHHHHcC
Confidence 33333333222 46899889988777654
No 39
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.68 E-value=2.9e-14 Score=157.46 Aligned_cols=468 Identities=14% Similarity=0.119 Sum_probs=303.3
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHhhC--------cchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHh
Q 006253 7 QILLNAQSVDGTVRKQAEESLKQYQEQN--------LPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFEL 78 (653)
Q Consensus 7 ~ll~~~~s~d~~~r~~A~~~L~~~~~~~--------~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~ 78 (653)
.++.-+.++|+.+|..|...|..+...+ .++.+..|+..+.+ +.++.+|..|+..|++..... .. +..
T Consensus 154 ~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~-~~d~~vr~~Aa~aL~~Ls~~~-~~-~~~- 229 (780)
T 2z6g_A 154 ELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN-TNDVETARCTSGTLHNLSHHR-EG-LLA- 229 (780)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHTSH-HH-HHH-
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcC-CCCHHHHHHHHHHHHHHhCCc-hh-HHH-
Confidence 3344445788999999999998776531 25788899999986 348899999999999844321 10 000
Q ss_pred hhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCC---CCchHHHHHHHhhcCCChhHHHHHHHHH
Q 006253 79 VQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHK---QWPELIGALLSNIHQLPPHTKQATLETL 155 (653)
Q Consensus 79 ~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~---~~~~l~~~l~~~l~~~~~~~~~~~l~~l 155 (653)
+ ......+.|++.|.++++.+|..++.+|..++....... .-...++.|+..+.+++..++..++.+|
T Consensus 230 ------i---~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL 300 (780)
T 2z6g_A 230 ------I---FKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCL 300 (780)
T ss_dssp ------H---HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHH
T ss_pred ------H---HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHH
Confidence 0 112356788999999999999999999999997642100 0146889999999999999999999999
Q ss_pred HHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHH
Q 006253 156 GYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKI 235 (653)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~ 235 (653)
..++... ++.-..-.-...++.++..+.+ ......+..+..++..+... ..... .......++.+..++.+.+.++
T Consensus 301 ~~La~~~-~e~~~~i~~~~~i~~Lv~lL~~-~~~~~~~~~a~~aL~~Ls~~-~~~~~-~i~~~g~l~~Ll~lL~~~~~~~ 376 (780)
T 2z6g_A 301 QILAYGN-QESKLIILASGGPQALVNIMRT-YTYEKLLWTTSRVLKVLSVC-SSNKP-AIVEAGGMQALGLHLTDPSQRL 376 (780)
T ss_dssp HHHHTTC-HHHHHHHHTTTHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHTS-TTHHH-HHHHTTHHHHHGGGTTCSCHHH
T ss_pred HHHhcCC-hHHHHHHHHcCCHHHHHHHHhc-CCHHHHHHHHHHHHHHhhcC-hHHHH-HHHHhchHHHHHHHHcCCchHH
Confidence 8776432 1111000112356667777774 34455666777777776532 11100 0011235788888888888899
Q ss_pred HHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHH
Q 006253 236 RQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIK 315 (653)
Q Consensus 236 ~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (653)
+..++.+|..++...... .....+++.+++.+.+.+++++..|+..+..++....+. ...+..
T Consensus 377 ~~~a~~~L~~L~~~~~~~--~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~---------------~~~i~~ 439 (780)
T 2z6g_A 377 VQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN---------------KMMVCQ 439 (780)
T ss_dssp HHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHH---------------HHHHHT
T ss_pred HHHHHHHHHHHhccchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH---------------HHHHHH
Confidence 999999999988765432 123568888888889999999999998888887531100 001111
Q ss_pred hhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCC------c-hhchHHHHHhhhcCcc-hhhHHHH
Q 006253 316 HALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDD------I-VPLVMPFVEENITKQE-WRQREAA 387 (653)
Q Consensus 316 ~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~------~-~~~l~~~l~~~l~~~~-~~~r~aa 387 (653)
...++.++..+....+. ..+|..|..+|..++...++. + -...++.+.+.+.+++ |.+|.++
T Consensus 440 ---~g~i~~Lv~lL~~~~~~-------~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A 509 (780)
T 2z6g_A 440 ---VGGIEALVRTVLRAGDR-------EDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKAT 509 (780)
T ss_dssp ---TTHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHH
T ss_pred ---CCCHHHHHHHHHccCCH-------HHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHH
Confidence 23456666666532110 157888999998886533321 1 1234666667777655 6999999
Q ss_pred HHHHHHhhcCCCCCcchHHHH-HHHHHHHHHhcCCCchH----------------------HHHHHHHHHHHHHhhhccC
Q 006253 388 TYAFGSILEGPSPEKLVPLVN-IALNFMLTALMQDPNNH----------------------VKDTTAWTLGRMFEFLHGS 444 (653)
Q Consensus 388 l~~l~~i~~~~~~~~~~~~l~-~l~~~ll~~l~~d~~~~----------------------vr~~a~~~l~~~~~~~~~~ 444 (653)
+++|+.++.+. .....+.. .+++.++..+ .+.++. ++..++.+|++++....
T Consensus 510 ~~aL~nLa~~~--~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~-- 584 (780)
T 2z6g_A 510 VGLIRNLALCP--ANHAPLREQGAIPRLVQLL-VRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIH-- 584 (780)
T ss_dssp HHHHHHHHSSH--HHHHHHHHTTHHHHHHHHH-HHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHH--
T ss_pred HHHHHHHhcCH--HHHHHHHHCCCHHHHHHHH-HhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChh--
Confidence 99999998752 22222222 4567777766 554433 55556666666653211
Q ss_pred CCCccccCccch--HHHHHHHHHhccc-hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHH--HHHHHHHhccccccc
Q 006253 445 TLETPIINQGNC--QQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQE--IVQALLTVTHREDAG 519 (653)
Q Consensus 445 ~~~~~~~~~~~~--~~il~~l~~~l~d-~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~--i~~~L~~~l~~~~~~ 519 (653)
....+ ..+++.|+..+.+ ++.++..|+.+|.+++.. ......+.. .++.|.+++.+.+
T Consensus 585 -------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~--------~~~~~~i~~~g~i~~L~~Ll~~~~-- 647 (780)
T 2z6g_A 585 -------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--------KEAAEAIEAEGATAPLTELLHSRN-- 647 (780)
T ss_dssp -------HHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTS--------HHHHHHHHHTTCHHHHHHGGGCSC--
T ss_pred -------hHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC--------HHHHHHHHHCCCHHHHHHHHcCCC--
Confidence 00111 2357788888886 789999999999998742 112233333 5677888877654
Q ss_pred hhchHHHHHHHHHHHHHhcccc
Q 006253 520 ESRLRTAAYETLNEVVRCSTDE 541 (653)
Q Consensus 520 ~~~~~~~~~~~l~~l~~~~~~~ 541 (653)
..+|..+..+|..+....+..
T Consensus 648 -~~Vr~~A~~aL~~l~~~~~~~ 668 (780)
T 2z6g_A 648 -EGVATYAAAVLFRMSEDKPQD 668 (780)
T ss_dssp -HHHHHHHHHHHHHHHTTSCTT
T ss_pred -HHHHHHHHHHHHHHHcCChHh
Confidence 679999999999998876644
No 40
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.66 E-value=2.8e-13 Score=144.31 Aligned_cols=470 Identities=14% Similarity=0.108 Sum_probs=293.7
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHhhC--------cchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHh
Q 006253 7 QILLNAQSVDGTVRKQAEESLKQYQEQN--------LPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFEL 78 (653)
Q Consensus 7 ~ll~~~~s~d~~~r~~A~~~L~~~~~~~--------~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~ 78 (653)
.++.-+.++|+.+|..|...|..+...+ -++.+..|+..+.+ +.++.+|..|+..|++...... .+..
T Consensus 21 ~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~-~~~~~~~~~a~~~L~~ls~~~~--~~~~- 96 (529)
T 1jdh_A 21 ELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN-TNDVETARCTAGTLHNLSHHRE--GLLA- 96 (529)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTTSHH--HHHH-
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhc-CCCHHHHHHHHHHHHHHHcCch--hHHH-
Confidence 3444445789999999999998775431 24678888888875 3478899999999998654211 0000
Q ss_pred hhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCC-C--CchHHHHHHHhhcCCChhHHHHHHHHH
Q 006253 79 VQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHK-Q--WPELIGALLSNIHQLPPHTKQATLETL 155 (653)
Q Consensus 79 ~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~-~--~~~l~~~l~~~l~~~~~~~~~~~l~~l 155 (653)
+ ......+.|++.+.++++.++..++.++..++....... . -...+|.|.+.+.++++.++..+..+|
T Consensus 97 ------i---~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L 167 (529)
T 1jdh_A 97 ------I---FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCL 167 (529)
T ss_dssp ------H---HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHH
T ss_pred ------H---HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHH
Confidence 0 112355688899999999999999999999998641100 0 257889999999999999999999999
Q ss_pred HHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHH
Q 006253 156 GYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKI 235 (653)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~ 235 (653)
..++... ++.-..-.-...++.++..+.+ ......+..+..++.++... +.. .........++.+..++.++++++
T Consensus 168 ~~la~~~-~~~~~~i~~~~~i~~L~~ll~~-~~~~~~~~~a~~~L~~l~~~-~~~-~~~~~~~g~~~~L~~ll~~~~~~~ 243 (529)
T 1jdh_A 168 QILAYGN-QESKLIILASGGPQALVNIMRT-YTYEKLLWTTSRVLKVLSVC-SSN-KPAIVEAGGMQALGLHLTDPSQRL 243 (529)
T ss_dssp HHHHTTC-HHHHHHHHHTTHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTTS-TTH-HHHHHHTTHHHHHHTTTTSSCHHH
T ss_pred HHHHhCC-HHHHHHHHHCCCHHHHHHHHHh-CChHHHHHHHHHHHHHHhcC-ccc-HHHHHHCCCHHHHHHHHhCCChHH
Confidence 8877532 1111000112356666666664 34556677778887775431 110 000001246778888888889999
Q ss_pred HHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHH
Q 006253 236 RQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIK 315 (653)
Q Consensus 236 ~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (653)
+..++.+|..+....+.. .....++|.+++.+.+.+++++..+...+..++....+. ...+.+
T Consensus 244 ~~~a~~~L~~l~~~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~---------------~~~~~~ 306 (529)
T 1jdh_A 244 VQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN---------------KMMVCQ 306 (529)
T ss_dssp HHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHH---------------HHHHHH
T ss_pred HHHHHHHHHHHhcCChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHH---------------HHHHHH
Confidence 999999999988764332 123578888888888899999999998888887531100 011111
Q ss_pred hhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCC------ch-hchHHHHHhhhcCcc-hhhHHHH
Q 006253 316 HALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDD------IV-PLVMPFVEENITKQE-WRQREAA 387 (653)
Q Consensus 316 ~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~------~~-~~l~~~l~~~l~~~~-~~~r~aa 387 (653)
...+|.++..+....+ .+.++..|..+|..++...++. +. ...++.+.+.+.+++ |.+|..+
T Consensus 307 ---~~~v~~L~~ll~~~~~-------~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a 376 (529)
T 1jdh_A 307 ---VGGIEALVRTVLRAGD-------REDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKAT 376 (529)
T ss_dssp ---TTHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHH
T ss_pred ---cCChHHHHHHHHccCC-------HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHH
Confidence 1345666666653221 1468888999999886543321 11 134666667777765 7999999
Q ss_pred HHHHHHhhcCCCCCcchHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHH--HHhhhccCC--------CCccccCcc--
Q 006253 388 TYAFGSILEGPSPEKLVPLVN-IALNFMLTALMQDPNNHVKDTTAWTLGR--MFEFLHGST--------LETPIINQG-- 454 (653)
Q Consensus 388 l~~l~~i~~~~~~~~~~~~l~-~l~~~ll~~l~~d~~~~vr~~a~~~l~~--~~~~~~~~~--------~~~~~~~~~-- 454 (653)
+++++.++.+. .....+.+ .++|.++..+ ++.++.+|..|+|++++ +........ ...-.....
T Consensus 377 ~~~l~nl~~~~--~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~ 453 (529)
T 1jdh_A 377 VGLIRNLALCP--ANHAPLREQGAIPRLVQLL-VRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNR 453 (529)
T ss_dssp HHHHHHHTTSG--GGHHHHHHTTHHHHHHHHH-HHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHH
T ss_pred HHHHHHHhcCh--hhhHHHHHcCCHHHHHHHH-HHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHH
Confidence 99999999753 22233332 5788899989 88888999988888876 211000000 000000000
Q ss_pred ---chHHHHHHHHHhccc-hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHH--HHHHHHHHhccccccchhchHHHHH
Q 006253 455 ---NCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQ--EIVQALLTVTHREDAGESRLRTAAY 528 (653)
Q Consensus 455 ---~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~--~i~~~L~~~l~~~~~~~~~~~~~~~ 528 (653)
.-..+++.++..+.+ ++.++..|+.++.++... ......+. ..++.|..++.+.+ ..++..+.
T Consensus 454 ~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~--------~~~~~~i~~~~~~~~L~~l~~~~~---~~v~~~a~ 522 (529)
T 1jdh_A 454 IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--------KEAAEAIEAEGATAPLTELLHSRN---EGVATYAA 522 (529)
T ss_dssp HHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS--------HHHHHHHHHTTCHHHHHHGGGCSS---HHHHHHHH
T ss_pred HHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcC--------HHHHHHHHHcCChHHHHHHhcCCC---HHHHHHHH
Confidence 001345778888876 688999999999988642 00111111 34566777776553 67888888
Q ss_pred HHHHHH
Q 006253 529 ETLNEV 534 (653)
Q Consensus 529 ~~l~~l 534 (653)
.++..+
T Consensus 523 ~aL~~l 528 (529)
T 1jdh_A 523 AVLFRM 528 (529)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 888765
No 41
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.66 E-value=8.9e-14 Score=151.18 Aligned_cols=467 Identities=14% Similarity=0.114 Sum_probs=304.2
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHhhC--------cchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHH
Q 006253 6 TQILLNAQSVDGTVRKQAEESLKQYQEQN--------LPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFE 77 (653)
Q Consensus 6 ~~ll~~~~s~d~~~r~~A~~~L~~~~~~~--------~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~ 77 (653)
..++.-+.++|+.+|..|...|..+...+ .++.+..|+..+.+ +.++.+|..|+..|++...... . +..
T Consensus 17 ~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~-~~~~~~~~~A~~~L~~Ls~~~~-~-~~~ 93 (644)
T 2z6h_A 17 PELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN-TNDVETARCTAGTLHNLSHHRE-G-LLA 93 (644)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHTTSHH-H-HHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcChh-h-HHH
Confidence 34445555789999999999998876642 13678888899886 4578899999999987554321 1 000
Q ss_pred hhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCC---CCchHHHHHHHhhcCCChhHHHHHHHH
Q 006253 78 LVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHK---QWPELIGALLSNIHQLPPHTKQATLET 154 (653)
Q Consensus 78 ~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~---~~~~l~~~l~~~l~~~~~~~~~~~l~~ 154 (653)
. ......+.|++.|.++++.+|..++.++..++....+.. .-...++.|++.+.++++..+..++.+
T Consensus 94 ---i-------~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~ 163 (644)
T 2z6h_A 94 ---I-------FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDC 163 (644)
T ss_dssp ---H-------HTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHH
T ss_pred ---H-------HHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHH
Confidence 0 011356778899999999999999999999998642210 015789999999999998888888889
Q ss_pred HHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHH
Q 006253 155 LGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVK 234 (653)
Q Consensus 155 l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~ 234 (653)
|..++... ++.-..-.-...++.++..+.+ .....++..++.+|.++... +... ........++.+..++.+.+.+
T Consensus 164 L~~La~~~-~~~~~~i~~~g~v~~Lv~lL~~-~~~~~~~~~a~~~L~nLs~~-~~~~-~~l~~~g~l~~L~~ll~~~~~~ 239 (644)
T 2z6h_A 164 LQILAYGN-QESKLIILASGGPQALVNIMRT-YTYEKLLWTTSRVLKVLSVC-SSNK-PAIVEAGGMQALGLHLTDPSQR 239 (644)
T ss_dssp HHHHHTTC-HHHHHHHHHTTHHHHHHHHHTT-CCCHHHHHHHHHHHHHHTTC-TTHH-HHHHHTTHHHHHHTTTTCSCHH
T ss_pred HHHHHhcC-cHHHHHHHHcCChHHHHHHHHc-CChHHHHHHHHHHHHHHhcC-cccH-HHHHHCCCHHHHHHHHhcCCHH
Confidence 98887532 2111001123457777777775 34567788888888876531 1100 0000123677888888888899
Q ss_pred HHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHH
Q 006253 235 IRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFI 314 (653)
Q Consensus 235 ~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (653)
++..++.+|..++...+.. .....+++.+++.+.+.+++++..+...+..++....+. ...+.
T Consensus 240 ~~~~a~~~L~nL~~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~---------------~~~v~ 302 (644)
T 2z6h_A 240 LVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN---------------KMMVC 302 (644)
T ss_dssp HHHHHHHHHHHHGGGCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH---------------HHHHH
T ss_pred HHHHHHHHHHHHhhcchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH---------------HHHHH
Confidence 9999999999987654332 233578888888999999999999998888887531100 00111
Q ss_pred HhhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCC------c-hhchHHHHHhhhcCcc-hhhHHH
Q 006253 315 KHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDD------I-VPLVMPFVEENITKQE-WRQREA 386 (653)
Q Consensus 315 ~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~------~-~~~l~~~l~~~l~~~~-~~~r~a 386 (653)
+ ...++.++..+....+ .+.++..|..+|..++...++. + -...++.+.+.+.+++ +.+|.+
T Consensus 303 ~---~g~v~~Lv~lL~~~~~-------~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~ 372 (644)
T 2z6h_A 303 Q---VGGIEALVRTVLRAGD-------REDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA 372 (644)
T ss_dssp H---TTHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHH
T ss_pred H---cCCHHHHHHHHHccCC-------cHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHH
Confidence 1 1356666666653221 1467888999999887543321 1 1235666777777764 799999
Q ss_pred HHHHHHHhhcCCCCCcchHHH-HHHHHHHHHHhcCCCchHHHHHHHH----------------------HHHHHHhhhcc
Q 006253 387 ATYAFGSILEGPSPEKLVPLV-NIALNFMLTALMQDPNNHVKDTTAW----------------------TLGRMFEFLHG 443 (653)
Q Consensus 387 al~~l~~i~~~~~~~~~~~~l-~~l~~~ll~~l~~d~~~~vr~~a~~----------------------~l~~~~~~~~~ 443 (653)
++++++.++.+. ....... ..+++.++..+ .+.++.+|..|+| +|..++....
T Consensus 373 a~~~L~nLa~~~--~~~~~i~~~~~i~~Lv~lL-~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~- 448 (644)
T 2z6h_A 373 TVGLIRNLALCP--ANHAPLREQGAIPRLVQLL-VRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVH- 448 (644)
T ss_dssp HHHHHHHHTTSG--GGHHHHHHTTHHHHHHHHH-HHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHH-
T ss_pred HHHHHHHHccCH--HHHHHHHHcCCHHHHHHHH-hccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHH-
Confidence 999999998753 2222222 24677777777 6655555554444 4444443211
Q ss_pred CCCCccccCccch--HHHHHHHHHhccc-hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHH--HHHHHHHHhcccccc
Q 006253 444 STLETPIINQGNC--QQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQ--EIVQALLTVTHREDA 518 (653)
Q Consensus 444 ~~~~~~~~~~~~~--~~il~~l~~~l~d-~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~--~i~~~L~~~l~~~~~ 518 (653)
....+ ...++.|+..+.+ ++.++..|+.+|.+++.. . .....+. ..++.|..++.+.+
T Consensus 449 --------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~-~-------~~~~~i~~~g~l~~L~~ll~~~~- 511 (644)
T 2z6h_A 449 --------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD-K-------EAAEAIEAEGATAPLTELLHSRN- 511 (644)
T ss_dssp --------HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-H-------HHHHHHHHTTCHHHHHHHTTCSC-
T ss_pred --------HHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-H-------HHHHHHHHcCChhHHHHHHcCCC-
Confidence 01111 2457788888886 688999999999998753 0 1122221 23566777776654
Q ss_pred chhchHHHHHHHHHHHHHhcc
Q 006253 519 GESRLRTAAYETLNEVVRCST 539 (653)
Q Consensus 519 ~~~~~~~~~~~~l~~l~~~~~ 539 (653)
..+|..+..+|+.+....+
T Consensus 512 --~~vr~~A~~aL~~l~~~~~ 530 (644)
T 2z6h_A 512 --EGVATYAAAVLFRMSEDKP 530 (644)
T ss_dssp --HHHHHHHHHHHHHHTTTSC
T ss_pred --HHHHHHHHHHHHHHhccCc
Confidence 6799999999999977654
No 42
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.66 E-value=6.9e-14 Score=150.39 Aligned_cols=464 Identities=12% Similarity=0.078 Sum_probs=307.7
Q ss_pred CCChHHHHHHHHHHHHHHhh---------CcchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhccC
Q 006253 14 SVDGTVRKQAEESLKQYQEQ---------NLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLS 84 (653)
Q Consensus 14 s~d~~~r~~A~~~L~~~~~~---------~~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~ 84 (653)
.++.+-.-.|...+..+..- ..+|++..++..+.++ +..++..|...+.+...... ....
T Consensus 258 ~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~--~~~~q~~A~~al~~aa~~~~---------~R~~ 326 (810)
T 3now_A 258 APDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTD--DELQQRVACECLIAASSKKD---------KAKA 326 (810)
T ss_dssp SCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSS--CHHHHHHHHHHHHHHTTSHH---------HHHT
T ss_pred cCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCcH---------HHHH
Confidence 45555555566666543221 0268888898888863 78888889988888554321 1111
Q ss_pred CChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhh---cCCCC-----CchHHHHHHHhhcCC--ChhHHHHHHHH
Q 006253 85 LDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIE---LPHKQ-----WPELIGALLSNIHQL--PPHTKQATLET 154 (653)
Q Consensus 85 l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~---~~~~~-----~~~l~~~l~~~l~~~--~~~~~~~~l~~ 154 (653)
+-. ..+ +.|...+.+++..+|..++.+|..++... .+... -..+++.+...+.++ ++.+++.++.+
T Consensus 327 I~~---~gv-~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~Avea 402 (810)
T 3now_A 327 LCE---QGV-DILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADG 402 (810)
T ss_dssp THH---HHH-HHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHH
T ss_pred HHH---cCc-HHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 211 234 77788888888899999999999998532 11111 246788899999888 88999999999
Q ss_pred HHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhh-----------cCC-------h--
Q 006253 155 LGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQAN-----------FSN-------D-- 214 (653)
Q Consensus 155 l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~-----------~~~-------~-- 214 (653)
|..++... .....-..-...+|.+++.++ ..+..++..|+.+|.++....+.. +.. .
T Consensus 403 LayLS~~~-~vk~~lv~d~g~Ip~LV~LL~--s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld 479 (810)
T 3now_A 403 LAYLTLDA-ECKEKLIEDKASIHALMDLAR--GGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELD 479 (810)
T ss_dssp HHHHTTSH-HHHHHHHHCHHHHHHHHHHHH--TTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHH
T ss_pred HHHHhCCc-HHHHHHHHccchHHHHHHHhC--CCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccc
Confidence 99987754 211100112468888888888 467889999999999987632100 000 0
Q ss_pred ---hHH--------HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhHH-HHHHHHHHHhhcCChhHHHHHHH
Q 006253 215 ---MER--------DYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQ-DIFNITAKAVREDEEPVALQAIE 282 (653)
Q Consensus 215 ---~~~--------~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~~~~~a~~ 282 (653)
... ...++.|..++..++++++..+.++|..++.. ++.....+. ..+|.++..+.+.++..+..|..
T Consensus 480 ~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~ 558 (810)
T 3now_A 480 DVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVVQEGGVKALLRMALEGTEKGKRHATQ 558 (810)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHH
Confidence 000 12477788888889999999999999999864 333222233 57888888898888889999998
Q ss_pred hHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCC
Q 006253 283 FWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGD 362 (653)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~ 362 (653)
.+..++...- +..-+........+|.|+..+.. +. .-..+..|..+|..++....+
T Consensus 559 AL~nL~~~~~----------------p~~~~~~~~~~~aIppLv~LL~~-~~-------~~l~~~eAl~AL~NLa~~~d~ 614 (810)
T 3now_A 559 ALARIGITIN----------------PEVSFSGQRSLDVIRPLLNLLQQ-DC-------TALENFESLMALTNLASMNES 614 (810)
T ss_dssp HHHHHHHHSC----------------HHHHTTTHHHHHTHHHHHHTTST-TS-------CHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHhcCCC----------------hhhhhcchhhhcHHHHHHHHhCC-CC-------cHHHHHHHHHHHHHHhcCCHH
Confidence 8888875310 00000000112356777776642 11 112234577777777754311
Q ss_pred ---Cch-hchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHH--HHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 006253 363 ---DIV-PLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVN--IALNFMLTALMQDPNNHVKDTTAWTLGR 436 (653)
Q Consensus 363 ---~~~-~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~--~l~~~ll~~l~~d~~~~vr~~a~~~l~~ 436 (653)
.+. .-.++.+.+.+.+++..+|.+|+.+++.++.+. +....+.. ..++.++..+ +.++..+|..|+|+|++
T Consensus 615 ~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~--~~~~~~v~~~g~l~~Lv~LL-~s~d~~vq~~Aa~ALan 691 (810)
T 3now_A 615 VRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSE--DVIKMFEGNNDRVKFLALLC-EDEDEETATACAGALAI 691 (810)
T ss_dssp HHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSH--HHHHHHHSSSSHHHHHHHGG-GCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh--HHHHHHHhccCcHHHHHHHh-cCCCHHHHHHHHHHHHH
Confidence 111 124556666777888899999999999999752 34444442 4788999999 88899999999999999
Q ss_pred HHhhhccCCCCccccCccch--HHHHHHHHHhccc-hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhH--HHHHHHHHH
Q 006253 437 MFEFLHGSTLETPIINQGNC--QQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFF--QEIVQALLT 511 (653)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~--~~il~~l~~~l~d-~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l--~~i~~~L~~ 511 (653)
++..... .....+ ...++.|+..+.+ +.+++..|++++.+++..- .....++ ...++.|..
T Consensus 692 Lt~~s~~-------~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s-------~e~~~~l~e~G~i~~L~~ 757 (810)
T 3now_A 692 ITSVSVK-------CCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAG-------EEIAKKLFETDIMELLSG 757 (810)
T ss_dssp HHHHCHH-------HHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTC-------HHHHHHHHTSTHHHHHTT
T ss_pred HhCCCHH-------HHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCC-------HHHHHHHHHCCCHHHHHH
Confidence 9984321 112222 3578888888886 7999999999999998631 1112222 256788888
Q ss_pred hccccccchhchHHHHHHHHHHHHHh
Q 006253 512 VTHREDAGESRLRTAAYETLNEVVRC 537 (653)
Q Consensus 512 ~l~~~~~~~~~~~~~~~~~l~~l~~~ 537 (653)
++...+..+.++.+.++++|..+.+.
T Consensus 758 LL~~~d~~~~~i~e~Al~aL~~ll~~ 783 (810)
T 3now_A 758 LGQLPDDTRAKAREVATQCLAAAERY 783 (810)
T ss_dssp SCCCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred HHhCcccCcHHHHHHHHHHHHHHHhC
Confidence 88655322467888999999998765
No 43
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.66 E-value=1.5e-13 Score=147.67 Aligned_cols=522 Identities=11% Similarity=0.037 Sum_probs=329.5
Q ss_pred chHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhccCCChHHHHHHHHHHHHhcCC------C-----
Q 006253 36 PGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSS------P----- 104 (653)
Q Consensus 36 ~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~------~----- 104 (653)
..++..|+..+.+.+-....|-.+..++-+.+.++.... ...|.. ...++ .+++.-.. +
T Consensus 147 ~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~----~~~~~~-----~~g~~-~~l~v~~~~~~~~~~~~~~~ 216 (810)
T 3now_A 147 DTLLTCLVYSITDRTISGAARDGVIELITRNVHYTALEW----AERLVE-----IRGLC-RLLDVCSELEDYKYESAMDI 216 (810)
T ss_dssp HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTCTTTTH----HHHHHH-----TTHHH-HHHHHHTCCSSSCCSSCCCC
T ss_pred HHHHHHHHHHhhccccChhhHHHHHHHHHHhCCcccccc----ccchhh-----HhhHH-HHHHHHhcCccccccccCCC
Confidence 457778889999888899999999998888775431100 011221 11222 23332221 1
Q ss_pred ChHHHHHHHHHHHHHHhhhcC---CCCCchHHHHHH-HhhcCCChhHHHHHHHHHHHHHhhhcccccchh--hHhHHHHH
Q 006253 105 AHDARSTASQVVAKVAGIELP---HKQWPELIGALL-SNIHQLPPHTKQATLETLGYICEEVSSDAVEQD--HVNKILTA 178 (653)
Q Consensus 105 ~~~vr~~~~~~l~~ia~~~~~---~~~~~~l~~~l~-~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~--~~~~l~~~ 178 (653)
.+..|.+++.+++++...... ...+.+.+..++ ..+..++.+....++.++..++... ++.- .. .....++.
T Consensus 217 ~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~-~~~~-~~~~~~~G~v~~ 294 (810)
T 3now_A 217 TGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGP-LDVG-NQVVAREGILQM 294 (810)
T ss_dssp CTTHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSS-HHHH-HHHHHTTTHHHH
T ss_pred ChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCC-HHHH-HHHHhccchHHH
Confidence 368999999999999875432 124455554444 3455667777777888888876654 3321 11 12357788
Q ss_pred HHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhH-----Hh
Q 006253 179 VVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYY-----EK 253 (653)
Q Consensus 179 l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~-----~~ 253 (653)
++..++ .++..++..|+.+++....- ...-. .....-.+.|..++...+..++..++.+|+++..... ..
T Consensus 295 li~Ll~--s~~~~~q~~A~~al~~aa~~-~~~R~--~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~ 369 (810)
T 3now_A 295 ILAMAT--TDDELQQRVACECLIAASSK-KDKAK--ALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRP 369 (810)
T ss_dssp HHHHHH--SSCHHHHHHHHHHHHHHTTS-HHHHH--TTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCS
T ss_pred HHHHhC--CCCHHHHHHHHHHHHHHcCC-cHHHH--HHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccc
Confidence 888887 57899999999999985432 11000 0011223777777777778899999999999875321 12
Q ss_pred hH-HhHHHHHHHHHHHhhcC--ChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhh
Q 006253 254 LA-PYIQDIFNITAKAVRED--EEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLL 330 (653)
Q Consensus 254 ~~-~~l~~l~~~~~~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~ 330 (653)
+. .-+..+++.+.+.+.+. +++++..|++.+..++..... +..+... ...+|.|+..+.
T Consensus 370 ~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~v----------------k~~lv~d--~g~Ip~LV~LL~ 431 (810)
T 3now_A 370 FGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAEC----------------KEKLIED--KASIHALMDLAR 431 (810)
T ss_dssp STTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHH----------------HHHHHHC--HHHHHHHHHHHH
T ss_pred hhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHH----------------HHHHHHc--cchHHHHHHHhC
Confidence 22 23567888888888877 889999999998888753210 1112211 235566666554
Q ss_pred hccCCccCCCccccHhhhHHHHHHHHHhhcCCC-----------c----------------h---------hchHHHHHh
Q 006253 331 KQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDD-----------I----------------V---------PLVMPFVEE 374 (653)
Q Consensus 331 ~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~-----------~----------------~---------~~l~~~l~~ 374 (653)
. +| -.+...|..+|..++...... + . .-.+|.+.+
T Consensus 432 s--~d-------~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~ 502 (810)
T 3now_A 432 G--GN-------QSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCA 502 (810)
T ss_dssp T--TC-------GGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred C--CC-------hHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHH
Confidence 2 11 245566777777776632100 0 0 024566677
Q ss_pred hhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCc
Q 006253 375 NITKQEWRQREAATYAFGSILEGPSPEKLVPLVN-IALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQ 453 (653)
Q Consensus 375 ~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~-~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~ 453 (653)
.+.+++...|+.|.++|+.++.. .+.....+. ..+|.++..+ .+..+.+|..|+|+|++++...... .....
T Consensus 503 LL~s~s~~vqe~Aa~aL~NLA~d--~~~r~~Vv~~Gaip~Lv~LL-~s~~~~~k~~Aa~AL~nL~~~~~p~----~~~~~ 575 (810)
T 3now_A 503 LAKTESHNSQELIARVLNAVCGL--KELRGKVVQEGGVKALLRMA-LEGTEKGKRHATQALARIGITINPE----VSFSG 575 (810)
T ss_dssp HHTCCCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHSCHH----HHTTT
T ss_pred HHcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHCCCHHHHHHHH-ccCCHHHHHHHHHHHHHHhcCCChh----hhhcc
Confidence 78888999999999999999853 222222222 4689999999 8889999999999999998654210 00011
Q ss_pred cchHHHHHHHHHhccch--hhHHHHHHHHHHHHHhcccCCCCCCCCCc-hhH-HHHHHHHHHhccccccchhchHHHHHH
Q 006253 454 GNCQQIISVLLQSMKDV--PNVAEKACGALYFLAQGFEDAISPSSPLT-PFF-QEIVQALLTVTHREDAGESRLRTAAYE 529 (653)
Q Consensus 454 ~~~~~il~~l~~~l~d~--~~v~~~a~~al~~~~~~~~~~~~~~~~l~-~~l-~~i~~~L~~~l~~~~~~~~~~~~~~~~ 529 (653)
......+|.|+..+..+ ...+..|+++|.+++..-. ... ..+ ...++.|..++...+ ..+|..+++
T Consensus 576 ~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d-------~~~~~Ii~aG~l~~Lv~LL~s~~---~~Vq~~A~~ 645 (810)
T 3now_A 576 QRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNE-------SVRQRIIKEQGVSKIEYYLMEDH---LYLTRAAAQ 645 (810)
T ss_dssp HHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH-------HHHHHHHHTTHHHHHHHHHHSCC---TTHHHHHHH
T ss_pred hhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCH-------HHHHHHHHcCCHHHHHHHHcCCC---HHHHHHHHH
Confidence 12345789999988742 3445689999999986411 111 111 145677777776553 578999999
Q ss_pred HHHHHHHhcccccHHHHH--HHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHhHHHHHHHHhCCCcchhhHhhHhH-
Q 006253 530 TLNEVVRCSTDETAPMVM--QLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYA- 606 (653)
Q Consensus 530 ~l~~l~~~~~~~~~~~~~--~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~~- 606 (653)
+++.++..- +....+.. ..++.++..+.. + +. .+|..++.+++.++...... ....+
T Consensus 646 ~L~NLa~~~-~~~~~~v~~~g~l~~Lv~LL~s--------~-d~----~vq~~Aa~ALanLt~~s~~~------~~~ii~ 705 (810)
T 3now_A 646 CLCNLVMSE-DVIKMFEGNNDRVKFLALLCED--------E-DE----ETATACAGALAIITSVSVKC------CEKILA 705 (810)
T ss_dssp HHHHHTTSH-HHHHHHHSSSSHHHHHHHGGGC--------S-SH----HHHHHHHHHHHHHHHHCHHH------HHHHHT
T ss_pred HHHHHhCCh-HHHHHHHhccCcHHHHHHHhcC--------C-CH----HHHHHHHHHHHHHhCCCHHH------HHHHHH
Confidence 999997632 12223331 244445444332 2 22 35666888898888752222 22223
Q ss_pred -HHHHHHHHHHHhccCcchhhhHHHHHHHHHHH
Q 006253 607 -DQMMGLFLRVFAIRSATAHEEAMLAIGALAYA 638 (653)
Q Consensus 607 -~~i~~~l~~~l~~~~~~~~e~~~~~~~~l~~~ 638 (653)
...++.++..+...+..+++.+..++++++..
T Consensus 706 ~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~ 738 (810)
T 3now_A 706 IASWLDILHTLIANPSPAVQHRGIVIILNMINA 738 (810)
T ss_dssp STTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC
Confidence 35778888999998899999999999999763
No 44
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.64 E-value=6.9e-14 Score=152.04 Aligned_cols=476 Identities=11% Similarity=0.058 Sum_probs=298.9
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCC---CCCchHHHHHHHhhcCC-ChhHHHHHHHHHHHHHhhhcccccc
Q 006253 93 IKSFILKTLSSPAHDARSTASQVVAKVAGIELPH---KQWPELIGALLSNIHQL-PPHTKQATLETLGYICEEVSSDAVE 168 (653)
Q Consensus 93 i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~---~~~~~l~~~l~~~l~~~-~~~~~~~~l~~l~~l~~~~~~~~~~ 168 (653)
..+.|++.|.++++.+|..++.+++.++...... -.-+..++.|+..+.+. ++.++..++.+|..++...+ ...
T Consensus 15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~--~~~ 92 (644)
T 2z6h_A 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE--GLL 92 (644)
T ss_dssp THHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHH--HHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh--hHH
Confidence 4567788888999999999999999999754210 01247889999999765 88999999999998776531 110
Q ss_pred hhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q 006253 169 QDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISS 248 (653)
Q Consensus 169 ~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~ 248 (653)
.-.-...++.++..+. ++++.++..|+.+|.++....+.... .......++.+..++.+++++++..++.+|..++.
T Consensus 93 ~i~~~g~i~~Lv~lL~--~~~~~v~~~A~~aL~nL~~~~~~~~~-~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~ 169 (644)
T 2z6h_A 93 AIFKSGGIPALVKMLG--SPVDSVLFYAITTLHNLLLHQEGAKM-AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY 169 (644)
T ss_dssp HHHTTTHHHHHHHHTT--CSSHHHHHHHHHHHHHHHHHSTTHHH-HHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHh--CCCHHHHHHHHHHHHHHHhCcchhHH-HHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHh
Confidence 1112357888888888 67899999999999998764221100 00113478888888888888888888889988885
Q ss_pred HhHHhhHHhHH-HHHHHHHHHhhcCC-hhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHH
Q 006253 249 TYYEKLAPYIQ-DIFNITAKAVREDE-EPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLL 326 (653)
Q Consensus 249 ~~~~~~~~~l~-~l~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~ 326 (653)
..++.-..... ..++.+++.+.+.+ +..+..+...+..++.... ....+.+ ...++.++
T Consensus 170 ~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~----------------~~~~l~~---~g~l~~L~ 230 (644)
T 2z6h_A 170 GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS----------------NKPAIVE---AGGMQALG 230 (644)
T ss_dssp TCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTT----------------HHHHHHH---TTHHHHHH
T ss_pred cCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcc----------------cHHHHHH---CCCHHHHH
Confidence 43332222222 46677777776543 4566667777666663210 0111111 13566666
Q ss_pred HHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCC-CchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchH
Q 006253 327 ETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGD-DIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVP 405 (653)
Q Consensus 327 ~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~ 405 (653)
..+... +..++..+..+|..++...+. .....+++.+.+.+.++++.+|..++++|+.++.+. ......
T Consensus 231 ~ll~~~---------~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~-~~~~~~ 300 (644)
T 2z6h_A 231 LHLTDP---------SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN-YKNKMM 300 (644)
T ss_dssp TTTTCS---------CHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHH
T ss_pred HHHhcC---------CHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-HHHHHH
Confidence 665421 135788888999988876532 334567788888888999999999999999998753 121111
Q ss_pred HH-HHHHHHHHHHhcCCC--chHHHHHHHHHHHHHHhhhccCCCCccccCc-cchHHHHHHHHHhccc-h-hhHHHHHHH
Q 006253 406 LV-NIALNFMLTALMQDP--NNHVKDTTAWTLGRMFEFLHGSTLETPIINQ-GNCQQIISVLLQSMKD-V-PNVAEKACG 479 (653)
Q Consensus 406 ~l-~~l~~~ll~~l~~d~--~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~-~~~~~il~~l~~~l~d-~-~~v~~~a~~ 479 (653)
.. ...++.++..+ .+. ++.+|..|+++|++++...+... .... -.....++.|.+.+.+ + +.++..|++
T Consensus 301 v~~~g~v~~Lv~lL-~~~~~~~~v~~~a~~aL~nL~~~~~~~~----~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~ 375 (644)
T 2z6h_A 301 VCQVGGIEALVRTV-LRAGDREDITEPAICALRHLTSRHQEAE----MAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG 375 (644)
T ss_dssp HHHTTHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHTSSSTTHH----HHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHH-HccCCcHHHHHHHHHHHHHHhcCCchHH----HHHHHHHHccChHHHHHHhCccCchHHHHHHHH
Confidence 11 23577777777 542 37999999999999975322100 0000 1112468888888885 3 689999999
Q ss_pred HHHHHHhcccCCCCCCCCCchhH-HHHHHHHHHhcccccc-------------------chhchHHHHHHHHHHHHHhcc
Q 006253 480 ALYFLAQGFEDAISPSSPLTPFF-QEIVQALLTVTHREDA-------------------GESRLRTAAYETLNEVVRCST 539 (653)
Q Consensus 480 al~~~~~~~~~~~~~~~~l~~~l-~~i~~~L~~~l~~~~~-------------------~~~~~~~~~~~~l~~l~~~~~ 539 (653)
++.+++..-. ...... ..+++.|+.++...+. .+..++..++.+|..++....
T Consensus 376 ~L~nLa~~~~-------~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~ 448 (644)
T 2z6h_A 376 LIRNLALCPA-------NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVH 448 (644)
T ss_dssp HHHHHTTSGG-------GHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHccCHH-------HHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHH
Confidence 9999986421 111111 2455666665543210 023566677788877765321
Q ss_pred cccHHHH--HHHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHhHHHHHHHHhCCCcchhhHhhHhHH--HHHHHHHH
Q 006253 540 DETAPMV--MQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYAD--QMMGLFLR 615 (653)
Q Consensus 540 ~~~~~~~--~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~--~i~~~l~~ 615 (653)
....+ ...++.+++.+.. . +. .++..+..++..++.. +. ....+. ..++.+..
T Consensus 449 --~~~~l~~~~~i~~Lv~lL~~--------~-~~----~v~~~a~~aL~~l~~~--~~------~~~~i~~~g~l~~L~~ 505 (644)
T 2z6h_A 449 --NRIVIRGLNTIPLFVQLLYS--------P-IE----NIQRVAAGVLCELAQD--KE------AAEAIEAEGATAPLTE 505 (644)
T ss_dssp --HHHHHHHTTCHHHHHHHTTC--------S-CH----HHHHHHHHHHHHHHTS--HH------HHHHHHHTTCHHHHHH
T ss_pred --HHHHHHhCCcHHHHHHHHcC--------C-CH----HHHHHHHHHHHHHHcC--HH------HHHHHHHcCChhHHHH
Confidence 11111 1234555554432 1 11 2455566677666531 11 222221 24667778
Q ss_pred HHhccCcchhhhHHHHHHHHHH
Q 006253 616 VFAIRSATAHEEAMLAIGALAY 637 (653)
Q Consensus 616 ~l~~~~~~~~e~~~~~~~~l~~ 637 (653)
.+...+.++|+.+..+++.++.
T Consensus 506 ll~~~~~~vr~~A~~aL~~l~~ 527 (644)
T 2z6h_A 506 LLHSRNEGVATYAAAVLFRMSE 527 (644)
T ss_dssp HTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHcCCCHHHHHHHHHHHHHHhc
Confidence 8888888999999988888865
No 45
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.62 E-value=9.5e-11 Score=130.83 Aligned_cols=591 Identities=10% Similarity=0.063 Sum_probs=330.8
Q ss_pred ChHHHHHHHHHHHHHHhh----CcchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhccCCChHHHH
Q 006253 16 DGTVRKQAEESLKQYQEQ----NLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKA 91 (653)
Q Consensus 16 d~~~r~~A~~~L~~~~~~----~~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~ 91 (653)
++.++.+.-+.+..+.+. +||+|+..+++.+.+ ++..+..+..+|+...+.-..... ..++.+.+.
T Consensus 125 ~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~---~~~~~~~~L~IL~~L~EEV~d~~~-------~~l~~~r~~ 194 (1073)
T 3gjx_A 125 EKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRT---SESLCQNNMVILKLLSEEVFDFSS-------GQITQVKAK 194 (1073)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHTTSHH-------HHBCHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHhccc-------ccccHHHHH
Confidence 466777777777766554 588999999888764 345566677777665443110000 012222222
Q ss_pred H-----------HHHHHHHhcCC-CChHHHHHHHHHHHHHHhhhcCCC--CCchHHHHH-HHhhcCCChhHHHHHHHHHH
Q 006253 92 Q-----------IKSFILKTLSS-PAHDARSTASQVVAKVAGIELPHK--QWPELIGAL-LSNIHQLPPHTKQATLETLG 156 (653)
Q Consensus 92 ~-----------i~~~ll~~l~~-~~~~vr~~~~~~l~~ia~~~~~~~--~~~~l~~~l-~~~l~~~~~~~~~~~l~~l~ 156 (653)
. +.+.+.+.+.. .++.+...+..+++..+... |-+ .-+++++.+ ...+ +++..|..|+.||.
T Consensus 195 ~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI-~i~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~ 271 (1073)
T 3gjx_A 195 HLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWI-PLGYIFETKLISTLIYKFL--NVPMFRNVSLKCLT 271 (1073)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTS-CTHHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhc-CHHHhccchHHHHHHHHhc--CChHHHHHHHHHHH
Confidence 2 22233333433 45677777777777776543 211 015688877 4655 46789999999999
Q ss_pred HHHhhhcccccchhhHhHHHHHHH----hccc----------C-CCCCHHHHHHHHHHHHHHHHh----hhhhcCChhHH
Q 006253 157 YICEEVSSDAVEQDHVNKILTAVV----QGMN----------A-SESNNDVRLAATRALYNALGF----AQANFSNDMER 217 (653)
Q Consensus 157 ~l~~~~~~~~~~~~~~~~l~~~l~----~~l~----------~-~~~~~~vr~~a~~~l~~~~~~----~~~~~~~~~~~ 217 (653)
.++..- .+.. ...+..+++.++ ..+. . .+.+.+.-..-...+..+.+. +..........
T Consensus 272 eIv~k~-~~~~-~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l 349 (1073)
T 3gjx_A 272 EIAGVS-VSQY-EEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREAL 349 (1073)
T ss_dssp HHHHSC-SGGG-HHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHhcc-ccch-HHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHH
Confidence 988752 1112 122333333222 1111 0 122223222233333333321 11111101111
Q ss_pred HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHh-------------------------hHHhHHHHHHHHHHHhhcC
Q 006253 218 DYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEK-------------------------LAPYIQDIFNITAKAVRED 272 (653)
Q Consensus 218 ~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-------------------------~~~~l~~l~~~~~~~~~~~ 272 (653)
...+..+..+...++.++.+-++..|..+.+..+.. +.+++..+...++..+..+
T Consensus 350 ~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P 429 (1073)
T 3gjx_A 350 MEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKP 429 (1073)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCS
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 234455666777789999999999999888764311 3445556666665555432
Q ss_pred Ch---------h-HHH-----HHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhh-hhhhHHHHHHHhhhccCCc
Q 006253 273 EE---------P-VAL-----QAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHA-LPVLVPLLLETLLKQEEDQ 336 (653)
Q Consensus 273 ~~---------~-~~~-----~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~l~~~l~~~l~~~~ed~ 336 (653)
++ + +|. ..+.....+-+ +..+.... -......+++.+...-..
T Consensus 430 ~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd--------------------~L~~lt~l~~~~~~~i~~~~l~~~~~~- 488 (1073)
T 3gjx_A 430 EEVLVVENDQGEVVREFMKDTDSINLYKNMRE--------------------TLVYLTHLDYVDTEIIMTKKLQNQVNG- 488 (1073)
T ss_dssp CCEEEEECSSSCEEEEECSSCHHHHHHHHHHH--------------------HHHHHHHHCHHHHHHHHHHHHHHHHTS-
T ss_pred ccccccCcccchHHHHHHhhcchHHHHHHHHH--------------------HHHHHhcCCHHHHHHHHHHHHHHHhcC-
Confidence 21 0 110 00000000000 00010000 012233333333321111
Q ss_pred cCCCccccHhhhHHHHHHHHHhhcC----CCchhchHHHHHhhhcCc---c--hhhHHHHHHHHHHhhcCCCCCcchHHH
Q 006253 337 DQDEGAWNIAMAGGTCLGLVARTVG----DDIVPLVMPFVEENITKQ---E--WRQREAATYAFGSILEGPSPEKLVPLV 407 (653)
Q Consensus 337 ~~d~~~~~~r~~a~~~L~~l~~~~~----~~~~~~l~~~l~~~l~~~---~--~~~r~aal~~l~~i~~~~~~~~~~~~l 407 (653)
+.-+|..+.++..++++++.+.. +.++|.+++.+......+ + ..++...++.+|...+-.. .-..++
T Consensus 489 --~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~--~h~~~L 564 (1073)
T 3gjx_A 489 --TEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLR--AHWKFL 564 (1073)
T ss_dssp --CCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHH--HCHHHH
T ss_pred --CCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHH--hCHHHH
Confidence 12359999999999999986654 267888888887665432 2 2344445577887655321 124688
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCC-ccccCccchHHHHHHHHHhccc-hhhHHHHHHHHHHHHH
Q 006253 408 NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLE-TPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLA 485 (653)
Q Consensus 408 ~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~-~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~ 485 (653)
+.++..++..+ .++++.|+.+|+.++..++..+...-.. ++....+|+..++..+.....+ .++-...-..+++.++
T Consensus 565 ~~vl~~L~~~m-~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi 643 (1073)
T 3gjx_A 565 KTVVNKLFEFM-HETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMI 643 (1073)
T ss_dssp HHHHHHHHHHT-TCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 88999999999 9999999999999999999988742110 0112356888888877776655 4555667778888888
Q ss_pred hcccCCCCCCCCCchhHHHHHHHHHHhccccc----------cchh--chHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Q 006253 486 QGFEDAISPSSPLTPFFQEIVQALLTVTHRED----------AGES--RLRTAAYETLNEVVRCSTDETAPMVMQLVPLI 553 (653)
Q Consensus 486 ~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~----------~~~~--~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l 553 (653)
...++. .....++..+|+.+...++.-- .+.. ..-...+++...++...|..|.|++..+++.+
T Consensus 644 ~~~p~~----~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~g~~f~~~~~~i~~~~ 719 (1073)
T 3gjx_A 644 GAQTDQ----TVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQLGRIYLDM 719 (1073)
T ss_dssp TTCCCH----HHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HhCCCc----chHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHHhhcchhHHHHHHHHHHHH
Confidence 875421 1124456666655544332110 0011 12247788888899999999999999999998
Q ss_pred HHHHHHH---HHhhc--CCh-hHH-HhHHHHHHHHHhHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccCcchhh
Q 006253 554 MMELHQT---LEAQK--LSS-DER-EKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHE 626 (653)
Q Consensus 554 ~~~l~~~---~~~~~--~~~-~~~-~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~e 626 (653)
++..+.. +.... .+. .++ .....+|..--+.+.-+...+++..+...+...+++++++.++.-.....+..|+
T Consensus 720 l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~~~~~v~~~~i~pl~~~vl~dY~~~~p~~r~ 799 (1073)
T 3gjx_A 720 LNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAARE 799 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHTSHHHHHHTHHHHHHSCGGGCC
T ss_pred HHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHhcCCccccc
Confidence 8876543 21100 000 011 0111222211223334444556553444445567888888888877766667787
Q ss_pred h-HHHHHHHHHHHhccCCccc-hhhhc
Q 006253 627 E-AMLAIGALAYATGLWRIRY-CLIVM 651 (653)
Q Consensus 627 ~-~~~~~~~l~~~~~~~f~~y-~~i~~ 651 (653)
. ++.++..++.-+|..+.|+ |.|+.
T Consensus 800 ~evL~l~s~iv~k~~~~~~~~~~~il~ 826 (1073)
T 3gjx_A 800 PEVLSTMAIIVNKLGGHITAEIPQIFD 826 (1073)
T ss_dssp THHHHHHHHHHHHHGGGTGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcchhHHHHHH
Confidence 4 5778888999999999988 77653
No 46
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.61 E-value=1e-14 Score=137.56 Aligned_cols=209 Identities=11% Similarity=0.134 Sum_probs=167.3
Q ss_pred CCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHhh
Q 006253 362 DDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQ-DPNNHVKDTTAWTLGRMFEF 440 (653)
Q Consensus 362 ~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~-d~~~~vr~~a~~~l~~~~~~ 440 (653)
.++++.+-+.+.+.+.|.+|..|.+|+.+|+.+++++. ......+..+++.+...+ . |+++.||.+|+.+++.++..
T Consensus 10 ~di~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~-~~~~~~~~~i~~~L~~~l-~kd~~~~V~~~a~~~l~~la~~ 87 (242)
T 2qk2_A 10 VDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHP-KLENGEYGALVSALKKVI-TKDSNVVLVAMAGKCLALLAKG 87 (242)
T ss_dssp BCCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCS-SBCCCCCHHHHHHHHHHH-HHCSCHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCC-CCCCCCHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHH
Confidence 34555555666677889999999999999999988742 222233467788888888 7 99999999999999999998
Q ss_pred hccCCCCccccCccchHHHHHHHHHhccc-hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccc
Q 006253 441 LHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAG 519 (653)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~ 519 (653)
+.. ...+|+..++|.++..+.| ++.||..|+.++..++... .++.+++.+...+.+.+
T Consensus 88 l~~-------~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~------------~~~~ll~~l~~~l~~~~-- 146 (242)
T 2qk2_A 88 LAK-------RFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAST------------SLEAQQESIVESLSNKN-- 146 (242)
T ss_dssp HGG-------GGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS------------CHHHHHHHHHHHTTCSC--
T ss_pred Hhh-------hHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHcCCC--
Confidence 863 2568999999999999998 6899999999999998752 25778888888887653
Q ss_pred hhchHHHHHHHHHHHHHhccc--ccHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHhHHHHHHHHhCCCcc
Q 006253 520 ESRLRTAAYETLNEVVRCSTD--ETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQ 597 (653)
Q Consensus 520 ~~~~~~~~~~~l~~l~~~~~~--~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~ 597 (653)
..+|..++..++.++...+. .+.+++..++|.+...+.+ .. ..+|..+.++++.++..+|...
T Consensus 147 -~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D---------~~----~~VR~~A~~~l~~l~~~vg~~~- 211 (242)
T 2qk2_A 147 -PSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNE---------PD----PTVRDSSAEALGTLIKLMGDKA- 211 (242)
T ss_dssp -HHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTS---------SC----HHHHHHHHHHHHHHHHHHCHHH-
T ss_pred -hHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcC---------CC----hHHHHHHHHHHHHHHHHcCHHH-
Confidence 68999999999999888753 4678999999998887753 12 2588889999999999999764
Q ss_pred hhhHhhHhHHHHHHH
Q 006253 598 TKYVFMQYADQMMGL 612 (653)
Q Consensus 598 ~~~~~~~~~~~i~~~ 612 (653)
|.+|++.+-+.
T Consensus 212 ----~~~~l~~L~~~ 222 (242)
T 2qk2_A 212 ----VTPLLADVDPL 222 (242)
T ss_dssp ----HGGGGTTSCHH
T ss_pred ----HHHHHHhcCHH
Confidence 77777665333
No 47
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.59 E-value=1e-11 Score=132.89 Aligned_cols=444 Identities=14% Similarity=0.131 Sum_probs=257.7
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhhCcchHHHHHHHHHhc--CCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhc
Q 006253 5 VTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVN--DEKPVESRKLAGLILKNALDAKEQHRKFELVQRW 82 (653)
Q Consensus 5 l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~--~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~ 82 (653)
+.++++.+.|+|.+.|+-+.-.+..+.+.+ ++.+...++.+.. .+.++.+|-+|+..+.+..
T Consensus 76 ~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~-~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~--------------- 139 (621)
T 2vgl_A 76 HMEAVNLLSSNRYTEKQIGYLFISVLVNSN-SELIRLINNAIKNDLASRNPTFMGLALHCIANVG--------------- 139 (621)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHSCCCC-HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHccCC-cHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccC---------------
Confidence 345556666666666666666666654443 2332222222221 0335666777766666643
Q ss_pred cCCChHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHHHhhhcCCCCCc--hHHHHHHHhhcCCChhHHHHHHHHHHHH
Q 006253 83 LSLDSSVKAQIKSFILKTL--SSPAHDARSTASQVVAKVAGIELPHKQWP--ELIGALLSNIHQLPPHTKQATLETLGYI 158 (653)
Q Consensus 83 ~~l~~~~~~~i~~~ll~~l--~~~~~~vr~~~~~~l~~ia~~~~~~~~~~--~l~~~l~~~l~~~~~~~~~~~l~~l~~l 158 (653)
+++..+.+.+.+.+++ .+.++.||+.|+.++..+.+.. |+ ..+ ++++.+.+.+.+.++.++.+|+.++..+
T Consensus 140 ---~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~-p~-~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i 214 (621)
T 2vgl_A 140 ---SREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTS-PD-LVPMGDWTSRVVHLLNDQHLGVVTAATSLITTL 214 (621)
T ss_dssp ---CHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHC-GG-GCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhC-hh-hcCchhHHHHHHHHhCCCCccHHHHHHHHHHHH
Confidence 2445567777888999 8899999999999999999975 52 333 7888889999999999999999999998
Q ss_pred HhhhcccccchhhHhHHHHHHHhc----------------------------ccC--CCCCHHHHHHHHHHHHHHHHhhh
Q 006253 159 CEEVSSDAVEQDHVNKILTAVVQG----------------------------MNA--SESNNDVRLAATRALYNALGFAQ 208 (653)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~~~l~~~----------------------------l~~--~~~~~~vr~~a~~~l~~~~~~~~ 208 (653)
+..- ++.+ ......++..+.+. +.. ...+++.+..-...+..++....
T Consensus 215 ~~~~-~~~~-~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~ 292 (621)
T 2vgl_A 215 AQKN-PEEF-KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQ 292 (621)
T ss_dssp HHHC-HHHH-TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHhC-hHHH-HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 8754 3322 12222222222111 110 01234444433333333322110
Q ss_pred h--------------------------hcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHH
Q 006253 209 A--------------------------NFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIF 262 (653)
Q Consensus 209 ~--------------------------~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~ 262 (653)
+ ............+.+..++.+.++++|-.++..+..++...+. .+.+....
T Consensus 293 ~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~--~~~~~~~~ 370 (621)
T 2vgl_A 293 EPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFS--HEAVKTHI 370 (621)
T ss_dssp SCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT--HHHHHTTH
T ss_pred cCcccccccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc--HHHHHHHH
Confidence 0 0001112233455556666677888888888888888876541 12233334
Q ss_pred HHHHHHhh-cCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCc
Q 006253 263 NITAKAVR-EDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEG 341 (653)
Q Consensus 263 ~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~ 341 (653)
..++..+. ++|..+|..+++.+..++... .+..++..+...+... |
T Consensus 371 ~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~-------------------------Nv~~Iv~eL~~yl~~~--d------ 417 (621)
T 2vgl_A 371 ETVINALKTERDVSVRQRAVDLLYAMCDRS-------------------------NAQQIVAEMLSYLETA--D------ 417 (621)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHCCHH-------------------------HHHHHHHHHHHHHHHC--C------
T ss_pred HHHHHHhccCCCHhHHHHHHHHHHHHcChh-------------------------hHHHHHHHHHHHHHhc--C------
Confidence 44556677 888899999999988887531 1234555555555432 1
Q ss_pred cccHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCC
Q 006253 342 AWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQD 421 (653)
Q Consensus 342 ~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d 421 (653)
...|..+..+++.++..++... .-.+..+.+.+....-.+...+...+..+.... ..+..+ .+..+...+ .+
T Consensus 418 -~~~~~~~v~~I~~la~k~~~~~-~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~--~~~~~~---~~~~l~~~l-~~ 489 (621)
T 2vgl_A 418 -YSIREEIVLKVAILAEKYAVDY-TWYVDTILNLIRIAGDYVSEEVWYRVIQIVINR--DDVQGY---AAKTVFEAL-QA 489 (621)
T ss_dssp -HHHHHHHHHHHHHHHHHHCSST-HHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGG--CSCHHH---HHHHHHHHH-TS
T ss_pred -HHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHhhcccchHHHHHHHHHHHhCC--hhHHHH---HHHHHHHHH-cC
Confidence 2467778888888887765332 233344444443322223444455555555432 122222 345556667 66
Q ss_pred Cc--hHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc-hhhHHHHHHHHHHHHHhcccCCCCCCCCC
Q 006253 422 PN--NHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPL 498 (653)
Q Consensus 422 ~~--~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~~~~~~~~~~~~l 498 (653)
+. ..+...++|++|.++....+. ....-..++..+...+.+ ++.||..+..++..+....
T Consensus 490 ~~~~~~li~~~~wilGEy~~~~~~~-------~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~---------- 552 (621)
T 2vgl_A 490 PACHENLVKVGGYILGEFGNLIAGD-------PRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLF---------- 552 (621)
T ss_dssp SSCCHHHHHHHHHHHHHHTHHHHSS-------TTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHC----------
T ss_pred ccchHHHHHHHHHHhcchHHHhccc-------CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHC----------
Confidence 54 356677889999999887631 000112456666666665 6889999988888886542
Q ss_pred chhHHHHHHHHHHhccc--cccchhchHHHHHHHHHHH
Q 006253 499 TPFFQEIVQALLTVTHR--EDAGESRLRTAAYETLNEV 534 (653)
Q Consensus 499 ~~~l~~i~~~L~~~l~~--~~~~~~~~~~~~~~~l~~l 534 (653)
|-....+..+++.... .. +..+|..|.+...-+
T Consensus 553 -p~~~~~i~~~l~~~~~~~~~--d~evrdRA~~y~~Ll 587 (621)
T 2vgl_A 553 -PEVKATIQDVLRSDSQLKNA--DVELQQRAVEYLRLS 587 (621)
T ss_dssp -GGGHHHHHHHHSSHHHHSCS--SHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHH
Confidence 1123334444443332 22 467888888876665
No 48
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.59 E-value=6.7e-13 Score=139.60 Aligned_cols=390 Identities=14% Similarity=0.128 Sum_probs=264.5
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHhh--Ccc-------hHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhh
Q 006253 4 EVTQILLNAQSVDGTVRKQAEESLKQYQEQ--NLP-------GFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHR 74 (653)
Q Consensus 4 ~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~--~~~-------~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~ 74 (653)
.+..+++++.|.|.+.+.+|.+.+.++... +|| |.++.|+++|.+ +.++.++..|+..|.|.........
T Consensus 58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~-~~~~~lq~~Aa~aL~nias~~~e~~ 136 (510)
T 3ul1_B 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGK-TDCSPIQFESAWALTNIASGTSEQT 136 (510)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCC-CCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 377899999999999999999999987543 333 578889999876 4468899999999999765322111
Q ss_pred HHHhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCC----CCchHHHHHHHhhcCCCh-----
Q 006253 75 KFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHK----QWPELIGALLSNIHQLPP----- 145 (653)
Q Consensus 75 ~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~----~~~~l~~~l~~~l~~~~~----- 145 (653)
+ .=......+.|++.|.+++..+|..++.+|+.|+... +.. .-...++.|...+.+++.
T Consensus 137 ~-----------~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~-~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~ 204 (510)
T 3ul1_B 137 K-----------AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDG-SAFRDLVIKHGAIDPLLALLAVPDLSTLAC 204 (510)
T ss_dssp H-----------HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTCHHHHHHHTCSSCGGGSCH
T ss_pred H-----------HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC-HHHHHHHHHcCChHHHHHHHHhccchhhhH
Confidence 0 0011234568899999999999999999999998642 100 113567778888876543
Q ss_pred hHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHH
Q 006253 146 HTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVC 225 (653)
Q Consensus 146 ~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~ 225 (653)
..+..+..++..++..-.+..- ......++|.+...+. +++++++..|+.+|..+...-.+... ......+++.+.
T Consensus 205 ~~~~~a~~~L~nl~~~~~~~~~-~~~~~~~lp~L~~LL~--~~~~~v~~~A~~aL~~L~~~~~~~~~-~i~~~g~i~~Lv 280 (510)
T 3ul1_B 205 GYLRNLTWTLSNLCRNKNPAPP-LDAVEQILPTLVRLLH--HNDPEVLADSCWAISYLTDGPNERIE-MVVKKGVVPQLV 280 (510)
T ss_dssp HHHHHHHHHHHHHHCCCSSCCC-HHHHHHHHHHHHHHTT--CSCHHHHHHHHHHHHHHTSSCHHHHH-HHHTTTCHHHHH
T ss_pred HHHHHHHHHHHHHhhcccchhH-HHHHHhHHHHHHHHHh--cCCHHHHHHHHHHHHHHhhchhhhHH-HHHhcccchhhh
Confidence 3456777888887775422211 2456778999999998 78899999999999987643211100 000123577788
Q ss_pred hhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhHH-HHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCC
Q 006253 226 EATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQ-DIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSG 304 (653)
Q Consensus 226 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 304 (653)
.++.+++..++..++.++..++..........+. ..++.+...+.+.+++++..+...+..++....
T Consensus 281 ~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~------------ 348 (510)
T 3ul1_B 281 KLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQ------------ 348 (510)
T ss_dssp HHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCH------------
T ss_pred hhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcH------------
Confidence 8888899999999999999987655443322222 456666777788899999999988888875211
Q ss_pred CCCCchhhHHHhhh-hhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCCch-----hchHHHHHhhhcC
Q 006253 305 DSDIPCFYFIKHAL-PVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIV-----PLVMPFVEENITK 378 (653)
Q Consensus 305 ~~~~~~~~~~~~~l-~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~-----~~l~~~l~~~l~~ 378 (653)
.....+. ..++|.++..+.. .++.+|..|..+|..++.....+.. .-.++.+...+.+
T Consensus 349 -------~~~~~v~~~g~i~~Lv~lL~~---------~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~ 412 (510)
T 3ul1_B 349 -------DQIQQVVNHGLVPFLVGVLSK---------ADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA 412 (510)
T ss_dssp -------HHHHHHHHTTHHHHHHHHHHS---------SCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGC
T ss_pred -------HHHHHHHhcCCHHHHHHHHcC---------CCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC
Confidence 1111111 2467777777753 1257889999999998875432111 1345566678888
Q ss_pred cchhhHHHHHHHHHHhhcC---CC-CCcchHHHHH--HHHHHHHHhcCCCchHHHHHHHHHHHHHHh
Q 006253 379 QEWRQREAATYAFGSILEG---PS-PEKLVPLVNI--ALNFMLTALMQDPNNHVKDTTAWTLGRMFE 439 (653)
Q Consensus 379 ~~~~~r~aal~~l~~i~~~---~~-~~~~~~~l~~--l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~ 439 (653)
++++.+..++.+|..+... .+ .+.+...+.+ .+..|.... .+++..|+..|...|.+|..
T Consensus 413 ~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq-~~~n~~i~~~A~~iie~yf~ 478 (510)
T 3ul1_B 413 KDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQ-RHENESVYKASLNLIEKYFS 478 (510)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGG-GCSSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHH-cCCCHHHHHHHHHHHHHHCC
Confidence 8999999999999887642 11 1112222332 345555544 78999999999999988753
No 49
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.57 E-value=6.9e-14 Score=131.83 Aligned_cols=198 Identities=11% Similarity=0.184 Sum_probs=164.2
Q ss_pred ccccHhhhHHHHHHHHHhhcCC---CchhchHHHHHhhhc-CcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHH
Q 006253 341 GAWNIAMAGGTCLGLVARTVGD---DIVPLVMPFVEENIT-KQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLT 416 (653)
Q Consensus 341 ~~~~~r~~a~~~L~~l~~~~~~---~~~~~l~~~l~~~l~-~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~ 416 (653)
.+|..|..|..+|..+....++ ..+..+++.+...+. |++..+|.+|+.+++.++.+.+ ..+.+|...++|.++.
T Consensus 27 ~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~-~~~~~~~~~ilp~ll~ 105 (242)
T 2qk2_A 27 KKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLA-KRFSNYASACVPSLLE 105 (242)
T ss_dssp SSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHH
Confidence 4599999999999999987532 334677888888885 9999999999999999998764 5688999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc-hhhHHHHHHHHHHHHHhcccCCCCCC
Q 006253 417 ALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPS 495 (653)
Q Consensus 417 ~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~~~~~~~~~~ 495 (653)
.+ +|+++.||.++..++..+.... .+..+++.+...+.+ ++.+|..++..+..++...++ .
T Consensus 106 ~l-~d~~~~vr~~a~~aL~~~~~~~-------------~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~----~ 167 (242)
T 2qk2_A 106 KF-KEKKPNVVTALREAIDAIYAST-------------SLEAQQESIVESLSNKNPSVKSETALFIARALTRTQP----T 167 (242)
T ss_dssp GG-GCCCHHHHHHHHHHHHHHHTTS-------------CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCG----G
T ss_pred HH-cCCCHHHHHHHHHHHHHHHHcC-------------CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC----C
Confidence 99 9999999999999999997643 246789999999987 799999999999998876532 2
Q ss_pred CCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHHHHHHH
Q 006253 496 SPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDE-TAPMVMQLVPLIMMELHQT 560 (653)
Q Consensus 496 ~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~l~~~l~~~l~~~ 560 (653)
....+|++.+++.|...+++.. ..+|..+.++++.++...|.+ +.||+..+-+.-...+...
T Consensus 168 ~~~~~~l~~l~p~l~~~l~D~~---~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L~~~~~~~i~~~ 230 (242)
T 2qk2_A 168 ALNKKLLKLLTTSLVKTLNEPD---PTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKEC 230 (242)
T ss_dssp GCCHHHHHHHHHHHHHHHTSSC---HHHHHHHHHHHHHHHHHHCHHHHGGGGTTSCHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCHHHHHHHHHH
Confidence 3567899999999999998765 689999999999999999975 6777776544444444443
No 50
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.56 E-value=5.1e-11 Score=127.49 Aligned_cols=480 Identities=12% Similarity=0.070 Sum_probs=284.5
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 006253 39 LLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAK 118 (653)
Q Consensus 39 ~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ 118 (653)
....++.+. +.+...|+++-.++..+.+. .+|...-+.+.+.+-+.++++.+|..|..+++.
T Consensus 76 ~~~vvkl~~--s~~~~~Krl~YL~l~~~~~~----------------~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~ 137 (621)
T 2vgl_A 76 HMEAVNLLS--SNRYTEKQIGYLFISVLVNS----------------NSELIRLINNAIKNDLASRNPTFMGLALHCIAN 137 (621)
T ss_dssp HHHHHHGGG--CSCHHHHHHHHHHHHHSCCC----------------CHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhc--CCCHHHHHHHHHHHHHHccC----------------CcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhc
Confidence 334445444 34678888888888776653 244555667888889999999999999999998
Q ss_pred HHhhhcCCCCCchHHHHHHHhh--cCCChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHH
Q 006253 119 VAGIELPHKQWPELIGALLSNI--HQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAA 196 (653)
Q Consensus 119 ia~~~~~~~~~~~l~~~l~~~l--~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a 196 (653)
+..-+ ..+.+.+.+.+++ .+.++.+|..|+.++..+.+.. |+.+ .. ..+++.+...+. |.++.|+..|
T Consensus 138 i~~~e----~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~-p~~~-~~--~~~~~~l~~lL~--d~d~~V~~~a 207 (621)
T 2vgl_A 138 VGSRE----MAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTS-PDLV-PM--GDWTSRVVHLLN--DQHLGVVTAA 207 (621)
T ss_dssp HCCHH----HHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHC-GGGC-CC--CSCHHHHHHHTT--CSCHHHHHHH
T ss_pred cCCHH----HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhC-hhhc-Cc--hhHHHHHHHHhC--CCCccHHHHH
Confidence 86432 4578889999999 8899999999999999999966 7766 21 356677777777 8899999999
Q ss_pred HHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcC-------------CcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHH
Q 006253 197 TRALYNALGFAQANFSNDMERDYIMRVVCEATLS-------------PEVKIRQAAFECLVAISSTYYEKLAPYIQDIFN 263 (653)
Q Consensus 197 ~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~-------------~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~ 263 (653)
+.++..+...-+..+.. ..+.+++.+..++.. +++=.+..+++.+..+...........+.++++
T Consensus 208 ~~~l~~i~~~~~~~~~~--~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~ 285 (621)
T 2vgl_A 208 TSLITTLAQKNPEEFKT--SVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLE 285 (621)
T ss_dssp HHHHHHHHHHCHHHHTT--HHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHH--HHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 99998876543322221 113334444433321 134455556666665543211122233333444
Q ss_pred HHHHHhhcC---------Ch--hHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhc
Q 006253 264 ITAKAVRED---------EE--PVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQ 332 (653)
Q Consensus 264 ~~~~~~~~~---------~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~ 332 (653)
.++....+. +. .+...|...+..+.. ...+ +...+..+...+..
T Consensus 286 ~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~--------------------~~~~----~~~~~~~L~~~L~~- 340 (621)
T 2vgl_A 286 TILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS--------------------EPNL----LVRACNQLGQFLQH- 340 (621)
T ss_dssp HHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC--------------------CHHH----HHHHHHHHHHHSSC-
T ss_pred HHHHhhccCcccccccccchHHHHHHHHHHHHHhcCC--------------------cHHH----HHHHHHHHHHHhcC-
Confidence 333332211 11 333333333322211 0112 22333444444431
Q ss_pred cCCccCCCccccHhhhHHHHHHHHHhhcCC-CchhchHHHHHhhhc-CcchhhHHHHHHHHHHhhcCCCCCcchHHHHHH
Q 006253 333 EEDQDQDEGAWNIAMAGGTCLGLVARTVGD-DIVPLVMPFVEENIT-KQEWRQREAATYAFGSILEGPSPEKLVPLVNIA 410 (653)
Q Consensus 333 ~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~-~~~~~l~~~l~~~l~-~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l 410 (653)
.+..+|..|..+|..++...+. .++....+.+...+. +++..+|.-++..+..++.. ..+..+
T Consensus 341 --------~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~-------~Nv~~I 405 (621)
T 2vgl_A 341 --------RETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDR-------SNAQQI 405 (621)
T ss_dssp --------SCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH-------HHHHHH
T ss_pred --------CCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh-------hhHHHH
Confidence 1136888999999888876542 334445556666677 88888999999998888753 245677
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc-hhhHHHHHHHHHHHHHhccc
Q 006253 411 LNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFE 489 (653)
Q Consensus 411 ~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~~~~ 489 (653)
+..+...+ .+.+...|..+...++.++..++. ....+ +..+++.+.+ ...+...+...+..++...
T Consensus 406 v~eL~~yl-~~~d~~~~~~~v~~I~~la~k~~~-------~~~~~----v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~- 472 (621)
T 2vgl_A 406 VAEMLSYL-ETADYSIREEIVLKVAILAEKYAV-------DYTWY----VDTILNLIRIAGDYVSEEVWYRVIQIVINR- 472 (621)
T ss_dssp HHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHCS-------STHHH----HHHHHHHHHHHGGGSCSHHHHHHHHHHGGG-
T ss_pred HHHHHHHH-HhcCHHHHHHHHHHHHHHHHhcCC-------cHHHH----HHHHHHHHHhhcccchHHHHHHHHHHHhCC-
Confidence 77777778 777889999999999999988752 23333 4444444442 2234445556666666542
Q ss_pred CCCCCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhcccc--cHHHHHHHHHHHHHHHHHHHHhhcCC
Q 006253 490 DAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDE--TAPMVMQLVPLIMMELHQTLEAQKLS 567 (653)
Q Consensus 490 ~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~--~~~~~~~l~~~l~~~l~~~~~~~~~~ 567 (653)
..+..| .+..|...+.+.... ..+...+...+|.......+. ..|. . +++.+.+.+.
T Consensus 473 ------~~~~~~---~~~~l~~~l~~~~~~-~~li~~~~wilGEy~~~~~~~~~~~p~--~----~l~~l~~~~~----- 531 (621)
T 2vgl_A 473 ------DDVQGY---AAKTVFEALQAPACH-ENLVKVGGYILGEFGNLIAGDPRSSPL--I----QFNLLHSKFH----- 531 (621)
T ss_dssp ------CSCHHH---HHHHHHHHHTSSSCC-HHHHHHHHHHHHHHTHHHHSSTTSCHH--H----HHHHHHHHHT-----
T ss_pred ------hhHHHH---HHHHHHHHHcCccch-HHHHHHHHHHhcchHHHhcccCCCCHH--H----HHHHHHHHhc-----
Confidence 224444 456677777655421 223334557777775554432 1121 1 1222222110
Q ss_pred hhHHHhHHHHHHHHHhHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHh--ccCcchhhhHHHHHHHHH
Q 006253 568 SDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFA--IRSATAHEEAMLAIGALA 636 (653)
Q Consensus 568 ~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~--~~~~~~~e~~~~~~~~l~ 636 (653)
.++ ..+|..++.++..+....+ + ..+.+..++. .... +.+.++|+.|...+.-+.
T Consensus 532 ~~~----~~v~~~~Lta~~Kl~~~~p-~------~~~~i~~~l~---~~~~~~~~d~evrdRA~~y~~Ll~ 588 (621)
T 2vgl_A 532 LCS----VPTRALLLSTYIKFVNLFP-E------VKATIQDVLR---SDSQLKNADVELQQRAVEYLRLST 588 (621)
T ss_dssp TSC----HHHHHHHHHHHHHHHHHCG-G------GHHHHHHHHS---SHHHHSCSSHHHHHHHHHHHHHHH
T ss_pred cCC----HHHHHHHHHHHHHHHHHCh-H------HHHHHHHHHH---HHhcCCCCCHHHHHHHHHHHHHHc
Confidence 111 1456667777777766543 2 3333333333 2333 567899999987766553
No 51
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.56 E-value=2.9e-12 Score=135.55 Aligned_cols=389 Identities=14% Similarity=0.130 Sum_probs=264.9
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHhh--Cc-------chHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhh
Q 006253 4 EVTQILLNAQSVDGTVRKQAEESLKQYQEQ--NL-------PGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHR 74 (653)
Q Consensus 4 ~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~--~~-------~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~ 74 (653)
.+..+++++.|+|.+.+.+|.+.+.++... +| .|.++.|++++.. +.++.++..|+..|.+.........
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~-~~~~~~q~~Aa~aL~nia~~~~~~~ 155 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGK-TDCSPIQFESAWALTNIASGTSEQT 155 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTC-TTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcC-CCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 467889999999999999999999887543 22 3577788899875 4578899999999999765322110
Q ss_pred HHHhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCC----CchHHHHHHHhhcCCCh-----
Q 006253 75 KFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQ----WPELIGALLSNIHQLPP----- 145 (653)
Q Consensus 75 ~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~----~~~l~~~l~~~l~~~~~----- 145 (653)
+ .-......+.|++.+.+++..+|..++.+|+.|+... +..+ -...++.|+..+.+++.
T Consensus 156 ~-----------~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~-~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~ 223 (529)
T 3tpo_A 156 K-----------AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAG-SAFRDLVIKHGAIDPLLALLAVPDLSTLAC 223 (529)
T ss_dssp H-----------HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTCHHHHHHTTCSSCGGGSCH
T ss_pred H-----------HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccC-HHHHHHHHHcCCcHHHHHHHhccchhHhHH
Confidence 0 0011235678889999999999999999999998642 1000 12456778888876543
Q ss_pred hHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHH
Q 006253 146 HTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVC 225 (653)
Q Consensus 146 ~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~ 225 (653)
.....+..++..++....+..- ......++|.+...+. +++++++..|+.+|..+.....+... ......+++.+.
T Consensus 224 ~~~~~a~~~L~nl~~~~~~~~~-~~~~~~~lp~L~~LL~--~~~~~v~~~a~~aL~~l~~~~~~~~~-~v~~~g~i~~Lv 299 (529)
T 3tpo_A 224 GYLRNLTWTLSNLCRNKNPAPP-LDAVEQILPTLVRLLH--HNDPEVLADSCWAISYLTDGPNERIE-MVVKKGVVPQLV 299 (529)
T ss_dssp HHHHHHHHHHHHHHCCCTTCCC-HHHHHHHHHHHHHHTT--SSCHHHHHHHHHHHHHHHSSCHHHHH-HHHTTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhcccchhh-HHHHhhHHHHHHHHhc--CCcHHHHHHHHHHHHHhhhhhhhhHH-HHHhccchHHHH
Confidence 3466777888888775422211 3456778999999998 68899999999999987653221110 000123577788
Q ss_pred hhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhHH-HHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCC
Q 006253 226 EATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQ-DIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSG 304 (653)
Q Consensus 226 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 304 (653)
.++.++++.++..++.++..++..........+. ..++.+...+.+.++.++..|+..+..++....
T Consensus 300 ~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~------------ 367 (529)
T 3tpo_A 300 KLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQ------------ 367 (529)
T ss_dssp HHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCH------------
T ss_pred HHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccH------------
Confidence 8888899999999999999988655433322232 467778888889999999999988888875311
Q ss_pred CCCCchhhHHHhhh-hhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCCch-----hchHHHHHhhhcC
Q 006253 305 DSDIPCFYFIKHAL-PVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIV-----PLVMPFVEENITK 378 (653)
Q Consensus 305 ~~~~~~~~~~~~~l-~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~-----~~l~~~l~~~l~~ 378 (653)
.....+. ..++|.++..+.. .++.+|..|..+|..++.....+.. .-+++.+...+.+
T Consensus 368 -------~~~~~v~~~g~i~~Lv~lL~~---------~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~ 431 (529)
T 3tpo_A 368 -------DQIQQVVNHGLVPFLVGVLSK---------ADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA 431 (529)
T ss_dssp -------HHHHHHHHTTHHHHHHHHHHS---------SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGC
T ss_pred -------HHHHHHHhcCcHHHHHHHhcC---------CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcC
Confidence 1111111 2467777776652 1246888999999988765432211 1245566678888
Q ss_pred cchhhHHHHHHHHHHhhcC---CC-CCcchHHHHH--HHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 006253 379 QEWRQREAATYAFGSILEG---PS-PEKLVPLVNI--ALNFMLTALMQDPNNHVKDTTAWTLGRMF 438 (653)
Q Consensus 379 ~~~~~r~aal~~l~~i~~~---~~-~~~~~~~l~~--l~~~ll~~l~~d~~~~vr~~a~~~l~~~~ 438 (653)
++++.+..++.+|..+... .+ ...+...+.+ .+..|.... .+++..|+..|...|.+|.
T Consensus 432 ~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq-~~~n~~i~~~A~~iie~yf 496 (529)
T 3tpo_A 432 KDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQ-RHENESVYKASLNLIEKYF 496 (529)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGG-GCSSHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHH-cCCCHHHHHHHHHHHHHHC
Confidence 8999999999998887642 11 1112222222 244554444 7899999999999998874
No 52
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.55 E-value=2.1e-13 Score=144.38 Aligned_cols=366 Identities=11% Similarity=0.134 Sum_probs=238.2
Q ss_pred CchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhh
Q 006253 129 WPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQ 208 (653)
Q Consensus 129 ~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 208 (653)
....++.+++.+.++++..+..++..+..+...-....+..-.-..++|.+++.+.. +.++.++..|+.+|.++....+
T Consensus 74 ~~~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~-~~~~~~q~~Aa~aL~nia~~~~ 152 (529)
T 3tpo_A 74 VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGK-TDCSPIQFESAWALTNIASGTS 152 (529)
T ss_dssp SSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTC-TTCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcC-CCCHHHHHHHHHHHHHHHcCCH
Confidence 345678899999999999999999999887643211112111234688999999975 5678999999999999875432
Q ss_pred hhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhHH-HHHHHHHHHhhcCChh-----HHHHHHH
Q 006253 209 ANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQ-DIFNITAKAVREDEEP-----VALQAIE 282 (653)
Q Consensus 209 ~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~-----~~~~a~~ 282 (653)
.... .......++.|..++.+++.+++..++.+|+.++...+..-...+. ..++.++..+...+.. +...+..
T Consensus 153 ~~~~-~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~ 231 (529)
T 3tpo_A 153 EQTK-AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTW 231 (529)
T ss_dssp HHHH-HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHH
T ss_pred HHHH-HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHH
Confidence 2110 0011236788888999999999999999999998765433222222 4567777777654432 3334444
Q ss_pred hHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCC
Q 006253 283 FWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGD 362 (653)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~ 362 (653)
.+..++... ........ ...++|.|...+... +..++..|..+|..++....+
T Consensus 232 ~L~nl~~~~--------------~~~~~~~~----~~~~lp~L~~LL~~~---------~~~v~~~a~~aL~~l~~~~~~ 284 (529)
T 3tpo_A 232 TLSNLCRNK--------------NPAPPLDA----VEQILPTLVRLLHHN---------DPEVLADSCWAISYLTDGPNE 284 (529)
T ss_dssp HHHHHHCCC--------------TTCCCHHH----HHHHHHHHHHHTTSS---------CHHHHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHhcc--------------cchhhHHH----HhhHHHHHHHHhcCC---------cHHHHHHHHHHHHHhhhhhhh
Confidence 444444310 00011111 234667777666421 124677788888887754321
Q ss_pred C----chhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHH-HHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 006253 363 D----IVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLV-NIALNFMLTALMQDPNNHVKDTTAWTLGRM 437 (653)
Q Consensus 363 ~----~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l-~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~ 437 (653)
. .-.-+++.+.+.+.++++.++..++.+++.++.+.. ......+ ...++.+...+ .++++.+|..|+|+|+++
T Consensus 285 ~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~-~~~~~i~~~g~l~~L~~LL-~~~~~~i~~~a~~aL~nl 362 (529)
T 3tpo_A 285 RIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD-EQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNI 362 (529)
T ss_dssp HHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTGGGGHHHHT-TCSSHHHHHHHHHHHHHH
T ss_pred hHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccch-HHHHHHhhcccHHHHHHHH-cCCCHHHHHHHHHHHHHH
Confidence 1 112355666677888999999999999999987642 2222222 24678888889 999999999999999999
Q ss_pred HhhhccCCCCccccCccchHHHHHHHHHhccc-hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhH-HHHHHHHHHhccc
Q 006253 438 FEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFF-QEIVQALLTVTHR 515 (653)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l-~~i~~~L~~~l~~ 515 (653)
+...... ...-.-..++|.++..+.+ +..++..|+++|.+++.... ........ ..+++.|+.++..
T Consensus 363 ~~~~~~~------~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~-----~~~~~~l~~~g~i~~L~~LL~~ 431 (529)
T 3tpo_A 363 TAGRQDQ------IQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGT-----VEQIVYLVHCGIIEPLMNLLSA 431 (529)
T ss_dssp HTSCHHH------HHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSC-----HHHHHHHHHTTCHHHHHHGGGC
T ss_pred hcccHHH------HHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC-----HHHHHHHHHCcCHHHHHHHhcC
Confidence 8643210 0111122578888888886 78999999999999986421 11111111 2457888888876
Q ss_pred cccchhchHHHHHHHHHHHHHhcc
Q 006253 516 EDAGESRLRTAAYETLNEVVRCST 539 (653)
Q Consensus 516 ~~~~~~~~~~~~~~~l~~l~~~~~ 539 (653)
.+ ..++..++++|..+.+...
T Consensus 432 ~d---~~i~~~~L~aL~nil~~~~ 452 (529)
T 3tpo_A 432 KD---TKIIQVILDAISNIFQAAE 452 (529)
T ss_dssp SC---HHHHHHHHHHHHHHHHHHH
T ss_pred CC---HHHHHHHHHHHHHHHHHhH
Confidence 64 5677889999999886543
No 53
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.55 E-value=1.8e-12 Score=137.94 Aligned_cols=476 Identities=11% Similarity=0.049 Sum_probs=283.3
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCC---CCchHHHHHHHhhcCC-ChhHHHHHHHHHHHHHhhhcccc
Q 006253 91 AQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHK---QWPELIGALLSNIHQL-PPHTKQATLETLGYICEEVSSDA 166 (653)
Q Consensus 91 ~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~---~~~~l~~~l~~~l~~~-~~~~~~~~l~~l~~l~~~~~~~~ 166 (653)
....+.|++.|.++++.+|..++.++..++....... .-++.++.|.+.+.+. ++..+..++.+|..++... +.
T Consensus 16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~--~~ 93 (529)
T 1jdh_A 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR--EG 93 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSH--HH
T ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCc--hh
Confidence 3456778888999999999999999999987542100 1247889999988654 8899999999999987653 11
Q ss_pred cchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q 006253 167 VEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAI 246 (653)
Q Consensus 167 ~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l 246 (653)
...-.-...+|.+.+.+. ++++.++..|+.+|.++....+.... .......++.+..++.+++++++..++.+|..+
T Consensus 94 ~~~i~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~-~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~l 170 (529)
T 1jdh_A 94 LLAIFKSGGIPALVKMLG--SPVDSVLFYAITTLHNLLLHQEGAKM-AVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 170 (529)
T ss_dssp HHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHHHHCTTHHH-HHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHc--CCCHHHHHHHHHHHHHHhcCCcchHH-HHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 101112357888888898 67799999999999998764221100 001134688888888888899999988899887
Q ss_pred HHHhHHhhHHhHH-HHHHHHHHHhhcCC-hhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHH
Q 006253 247 SSTYYEKLAPYIQ-DIFNITAKAVREDE-EPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPL 324 (653)
Q Consensus 247 ~~~~~~~~~~~l~-~l~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 324 (653)
+...++.-..... ..++.++..+.+.+ +..+..+...+..++.... ....+.. ...+|.
T Consensus 171 a~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~----------------~~~~~~~---~g~~~~ 231 (529)
T 1jdh_A 171 AYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS----------------NKPAIVE---AGGMQA 231 (529)
T ss_dssp HTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTT----------------HHHHHHH---TTHHHH
T ss_pred HhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcc----------------cHHHHHH---CCCHHH
Confidence 7543332222222 35666666666544 3444556666555653110 0011111 245666
Q ss_pred HHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCC-CchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcc
Q 006253 325 LLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGD-DIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKL 403 (653)
Q Consensus 325 l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~ 403 (653)
++..+... +..++..+..+|..++...+. .....+++.+.+.+.++++.+|..++++++.++.+. .+..
T Consensus 232 L~~ll~~~---------~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~-~~~~ 301 (529)
T 1jdh_A 232 LGLHLTDP---------SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN-YKNK 301 (529)
T ss_dssp HHTTTTSS---------CHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTC-HHHH
T ss_pred HHHHHhCC---------ChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-HHHH
Confidence 66655421 135777888999988876532 334567778888888899999999999999998753 1222
Q ss_pred hHHHH-HHHHHHHHHhcCC--CchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc-h-hhHHHHHH
Q 006253 404 VPLVN-IALNFMLTALMQD--PNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-V-PNVAEKAC 478 (653)
Q Consensus 404 ~~~l~-~l~~~ll~~l~~d--~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~-~~v~~~a~ 478 (653)
..... ..++.++..+ .+ .++.+|..|+++|++++...+... .....-.-...++.+.+.+.+ + +.++..++
T Consensus 302 ~~~~~~~~v~~L~~ll-~~~~~~~~v~~~a~~~L~nl~~~~~~~~---~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~ 377 (529)
T 1jdh_A 302 MMVCQVGGIEALVRTV-LRAGDREDITEPAICALRHLTSRHQEAE---MAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 377 (529)
T ss_dssp HHHHHTTHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHTSSSTTHH---HHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHH
T ss_pred HHHHHcCChHHHHHHH-HccCCHHHHHHHHHHHHHHHHcCCchHH---HHHHHHHHcCChhHHHHHhccccchHHHHHHH
Confidence 22221 3567777777 53 347999999999999975422100 000000111347888888885 4 58999999
Q ss_pred HHHHHHHhcccCCCCCCCCCchhH-HHHHHHHHHhccccccchhchHHHHHHHHHHHHHhcccccHHHHH----------
Q 006253 479 GALYFLAQGFEDAISPSSPLTPFF-QEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVM---------- 547 (653)
Q Consensus 479 ~al~~~~~~~~~~~~~~~~l~~~l-~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~---------- 547 (653)
+++.+++..-. ...... ..+++.|+..+.+.+ ..+|..+..+++...-..|....+...
T Consensus 378 ~~l~nl~~~~~-------~~~~~~~~~~i~~L~~ll~~~~---~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~ 447 (529)
T 1jdh_A 378 GLIRNLALCPA-------NHAPLREQGAIPRLVQLLVRAH---QDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILA 447 (529)
T ss_dssp HHHHHHTTSGG-------GHHHHHHTTHHHHHHHHHHHHH---HHHC-----------CBTTBCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcChh-------hhHHHHHcCCHHHHHHHHHHHh---HHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHh
Confidence 99999986321 112222 256777777776432 344444444433311111111001100
Q ss_pred ------------HHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHhHHHHHHHHhCCCcchhhHhhHhH--HHHHHHH
Q 006253 548 ------------QLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYA--DQMMGLF 613 (653)
Q Consensus 548 ------------~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~~--~~i~~~l 613 (653)
..++.++..+.. . + ..++..+..+++.++. .. . ....+ ...++.+
T Consensus 448 ~~~~~~~~l~~~~~v~~l~~ll~~--------~-~----~~v~~~a~~~l~~l~~---~~-~----~~~~i~~~~~~~~L 506 (529)
T 1jdh_A 448 RDVHNRIVIRGLNTIPLFVQLLYS--------P-I----ENIQRVAAGVLCELAQ---DK-E----AAEAIEAEGATAPL 506 (529)
T ss_dssp TSHHHHHHHHHTTCHHHHHHGGGC--------S-C----HHHHHHHHHHHHHHTT---SH-H----HHHHHHHTTCHHHH
T ss_pred cCchHHHHHhccCCccHHHHHHcC--------C-c----hHHHHHHHHHHHHHhc---CH-H----HHHHHHHcCChHHH
Confidence 111222222221 1 1 1345556666666542 11 1 11111 2356777
Q ss_pred HHHHhccCcchhhhHHHHHHHH
Q 006253 614 LRVFAIRSATAHEEAMLAIGAL 635 (653)
Q Consensus 614 ~~~l~~~~~~~~e~~~~~~~~l 635 (653)
...+.+.+.++++.+..++.++
T Consensus 507 ~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 507 TELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHhc
Confidence 7888888889999999988876
No 54
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.54 E-value=1.1e-12 Score=137.89 Aligned_cols=397 Identities=11% Similarity=0.116 Sum_probs=260.0
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhccCCChHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHH
Q 006253 39 LLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSP-AHDARSTASQVVA 117 (653)
Q Consensus 39 ~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~-~~~vr~~~~~~l~ 117 (653)
+..+++.+.+ .+.+.+..|+..+|+.+..... ..+..=....+.+.|+++|.+. ++.++..++.+|+
T Consensus 59 i~~~v~~l~s--~d~~~q~~a~~~~rklls~e~~----------ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~ 126 (510)
T 3ul1_B 59 VEDIVKGINS--NNLESQLQATQAARKLLSREKQ----------PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALT 126 (510)
T ss_dssp HHHHHHHHTS--SCHHHHHHHHHHHHHHHTCSSC----------CCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcC--CCHHHHHHHHHHHHHHhcCCCC----------chHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 5667777764 4789999999999998754210 1111223345678899999765 5899999999999
Q ss_pred HHHhhhcCCC---CCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhh--HhHHHHHHHhcccCCC---CC
Q 006253 118 KVAGIELPHK---QWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDH--VNKILTAVVQGMNASE---SN 189 (653)
Q Consensus 118 ~ia~~~~~~~---~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~--~~~l~~~l~~~l~~~~---~~ 189 (653)
.|+....... .-...+|.|+..+.++++.+++.|+.+|+.|+... +.. +.. -...++.++..+...+ ..
T Consensus 127 nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~-~~~--r~~v~~~G~i~~Ll~lL~~~~~~~~~ 203 (510)
T 3ul1_B 127 NIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDG-SAF--RDLVIKHGAIDPLLALLAVPDLSTLA 203 (510)
T ss_dssp HHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHH--HHHHHHTTCHHHHHHHTCSSCGGGSC
T ss_pred HHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC-HHH--HHHHHHcCChHHHHHHHHhccchhhh
Confidence 9997531100 01357899999999999999999999999998754 221 111 1235666666666322 23
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhHH-HHHHHHHHH
Q 006253 190 NDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQ-DIFNITAKA 268 (653)
Q Consensus 190 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~ 268 (653)
..++..++.++.++...-. ..........+++.|..++.+++++++..++.+|..++............ .+++.++..
T Consensus 204 ~~~~~~a~~~L~nl~~~~~-~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~l 282 (510)
T 3ul1_B 204 CGYLRNLTWTLSNLCRNKN-PAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKL 282 (510)
T ss_dssp HHHHHHHHHHHHHHHCCCS-SCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccc-chhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhh
Confidence 4566677777777654211 11111123568888999999999999999999999988755443332222 477888888
Q ss_pred hhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccccHhhh
Q 006253 269 VREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMA 348 (653)
Q Consensus 269 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~ 348 (653)
+.+.+..++..++..+..++..... .....+. ...++.+...+.. ....+|..
T Consensus 283 L~~~~~~v~~~al~aL~nl~~~~~~---------------~~~~i~~---~g~l~~L~~LL~~---------~~~~v~~~ 335 (510)
T 3ul1_B 283 LGATELPIVTPALRAIGNIVTGTDE---------------QTQKVID---AGALAVFPSLLTN---------PKTNIQKE 335 (510)
T ss_dssp HTCSCHHHHHHHHHHHHHHTTSCHH---------------HHHHHHH---TTGGGGCC-CTTC---------SSHHHHHH
T ss_pred hcCCChhhhhHHHHHHHHhhcCCHH---------------HHHHHhh---ccchHHHHHHhcC---------CCHHHHHH
Confidence 8899999999999988887642100 0001111 1234444444431 11368889
Q ss_pred HHHHHHHHHhhcCCC---c-hhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHH-HHHHHHHHHhcCCCc
Q 006253 349 GGTCLGLVARTVGDD---I-VPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVN-IALNFMLTALMQDPN 423 (653)
Q Consensus 349 a~~~L~~l~~~~~~~---~-~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~-~l~~~ll~~l~~d~~ 423 (653)
|..+|..++....+. + -.-+++.+...+.++++.+|..|+++|+.++.+...+....... ..++.++..| .+++
T Consensus 336 A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL-~~~d 414 (510)
T 3ul1_B 336 ATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLL-SAKD 414 (510)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGG-GCSC
T ss_pred HHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHh-cCCC
Confidence 999999887543211 1 12356667777888899999999999999987643232222222 4688899999 9999
Q ss_pred hHHHHHHHHHHHHHHhhhccCCCCccccCccchHHH------HHHHHHhcc--chhhHHHHHHHHHHHHHh
Q 006253 424 NHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQI------ISVLLQSMK--DVPNVAEKACGALYFLAQ 486 (653)
Q Consensus 424 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~i------l~~l~~~l~--d~~~v~~~a~~al~~~~~ 486 (653)
+.++..++++|.++....... .....+..+ +.. ++.|+ +|..|+..|...|.++..
T Consensus 415 ~~i~~~~L~aL~nil~~~~~~------~~~~~~~~~iee~ggl~~-ie~Lq~~~n~~i~~~A~~iie~yf~ 478 (510)
T 3ul1_B 415 TKIIQVILDAISNIFQAAEKL------GETEKLSIMIEECGGLDK-IEALQRHENESVYKASLNLIEKYFS 478 (510)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT------TCHHHHHHHHHHTTHHHH-HHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHhHhc------cchHHHHHHHHHcCcHHH-HHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 999999999999998765321 011112222 222 33344 267888999888887764
No 55
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.8e-13 Score=128.33 Aligned_cols=196 Identities=12% Similarity=0.191 Sum_probs=162.6
Q ss_pred ccccHhhhHHHHHHH-HHhhcCC-----CchhchHHHHHhhh-cCcchhhHHHHHHHHHHhhcCCCCCcch-HHHHHHHH
Q 006253 341 GAWNIAMAGGTCLGL-VARTVGD-----DIVPLVMPFVEENI-TKQEWRQREAATYAFGSILEGPSPEKLV-PLVNIALN 412 (653)
Q Consensus 341 ~~~~~r~~a~~~L~~-l~~~~~~-----~~~~~l~~~l~~~l-~~~~~~~r~aal~~l~~i~~~~~~~~~~-~~l~~l~~ 412 (653)
..|.-|+.|...|.. +.+..++ .-+..++..+...+ .|++..+|.+|+.+++.++++.+...+. +|...++|
T Consensus 28 ~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp 107 (249)
T 2qk1_A 28 SKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFT 107 (249)
T ss_dssp SSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHH
Confidence 359999999999988 8754432 12346677788888 7899999999999999999887415677 99999999
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc-hhhHHHHHHHHHHHHHhcccCC
Q 006253 413 FMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDA 491 (653)
Q Consensus 413 ~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~~~~~~ 491 (653)
.++..+ +|..+.||.++..++..+++... |.....++..+++.+...+.+ ++.+|..++.+|.++++..+.
T Consensus 108 ~ll~~l-~dkk~~V~~aa~~al~~i~~~~~------~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~- 179 (249)
T 2qk1_A 108 PLLDRT-KEKKPSVIEAIRKALLTICKYYD------PLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD- 179 (249)
T ss_dssp HHHHGG-GCCCHHHHHHHHHHHHHHHHHSC------TTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS-
T ss_pred HHHHHH-cCCCHHHHHHHHHHHHHHHHHcc------ccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC-
Confidence 999999 99999999999999999999874 212224589999999999986 789999999999999987531
Q ss_pred CCCCCCCchhH-HHHHHHHHHhccccccchhchHHHHHHHHHHHHHhcccc-cHHHHHHH
Q 006253 492 ISPSSPLTPFF-QEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDE-TAPMVMQL 549 (653)
Q Consensus 492 ~~~~~~l~~~l-~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~l 549 (653)
.+..+.+|+ +.+++.|.+.+.+++ ..+|..+.++++.+....|+. +.||+..+
T Consensus 180 --~~~~l~~~l~~~iip~l~~~l~D~~---~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 180 --GYSTLQRYLKDEVVPIVIQIVNDTQ---PAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp --CSHHHHHHHTTTHHHHHHHHHTCSS---HHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred --cchhHHHHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 024477899 999999999998775 789999999999999999985 88887763
No 56
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.31 E-value=3.6e-10 Score=109.04 Aligned_cols=253 Identities=11% Similarity=0.066 Sum_probs=179.2
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhHh
Q 006253 94 KSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVN 173 (653)
Q Consensus 94 ~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~ 173 (653)
.+.|++.|.++++.+|..++.+++.+. -++.++.|...+.++++.+|..++.+|+.+... .....
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~--------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~-------~~~~~ 89 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRG--------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC-------KKCED 89 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHC--------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC-------TTTHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccC--------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhccc-------cccch
Confidence 457888999999999999999999875 157889999999999999999999999875321 12234
Q ss_pred HHHHHHHh-cccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHH
Q 006253 174 KILTAVVQ-GMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYE 252 (653)
Q Consensus 174 ~l~~~l~~-~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 252 (653)
.+++.+.. .++ |+++.+|..++.+|+.+....+ .....+++.+...++++++.+|..++..|+.+..
T Consensus 90 ~l~~~L~~~~~~--d~~~~vr~~a~~aL~~l~~~~~------~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~---- 157 (280)
T 1oyz_A 90 NVFNILNNMALN--DKSACVRATAIESTAQRCKKNP------IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND---- 157 (280)
T ss_dssp HHHHHHHHHHHH--CSCHHHHHHHHHHHHHHHHHCG------GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHhc--CCCHHHHHHHHHHHHHHhccCC------cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC----
Confidence 56666653 345 7899999999999998653211 1124677888888899999999999999987543
Q ss_pred hhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhc
Q 006253 253 KLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQ 332 (653)
Q Consensus 253 ~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~ 332 (653)
+..++.+...+++.++.+|..+...+..+.... +..++.+...+.
T Consensus 158 ------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~---------------------------~~~~~~L~~~l~-- 202 (280)
T 1oyz_A 158 ------KATIPLLINLLKDPNGDVRNWAAFAININKYDN---------------------------SDIRDCFVEMLQ-- 202 (280)
T ss_dssp -------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC---------------------------HHHHHHHHHHTT--
T ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc---------------------------HHHHHHHHHHhc--
Confidence 124566667788999999999998776664100 123455555543
Q ss_pred cCCccCCCccccHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHH
Q 006253 333 EEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALN 412 (653)
Q Consensus 333 ~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~ 412 (653)
++++.+|..|..+|+.+. . +..++.+...+.+++ +|..++.+++.+... ..+|
T Consensus 203 -------d~~~~vR~~A~~aL~~~~---~----~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~~-----------~~~~ 255 (280)
T 1oyz_A 203 -------DKNEEVRIEAIIGLSYRK---D----KRVLSVLCDELKKNT--VYDDIIEAAGELGDK-----------TLLP 255 (280)
T ss_dssp -------CSCHHHHHHHHHHHHHTT---C----GGGHHHHHHHHTSSS--CCHHHHHHHHHHCCG-----------GGHH
T ss_pred -------CCCHHHHHHHHHHHHHhC---C----HhhHHHHHHHhcCcc--HHHHHHHHHHhcCch-----------hhhH
Confidence 123678999999888765 2 344555555666644 888999999998641 2356
Q ss_pred HHHHHhcCCCchHHHHHHHHHHH
Q 006253 413 FMLTALMQDPNNHVKDTTAWTLG 435 (653)
Q Consensus 413 ~ll~~l~~d~~~~vr~~a~~~l~ 435 (653)
.+...+..++++.++..+...+.
T Consensus 256 ~L~~~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 256 VLDTMLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp HHHHHHTTSSCCHHHHHHHHHHT
T ss_pred HHHHHHhcCCCcHHHHHHHHHhh
Confidence 66677723456777777776664
No 57
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.30 E-value=8.4e-10 Score=106.41 Aligned_cols=252 Identities=12% Similarity=0.055 Sum_probs=177.8
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhc
Q 006253 132 LIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANF 211 (653)
Q Consensus 132 l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~ 211 (653)
-++.|...+.++++.+|..++.+|+.+.. ...++.+...+. ++++.+|..|+.+|+.+..
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~--d~~~~vR~~A~~aL~~l~~------ 83 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCS--DKNYIRRDIGAFILGQIKI------ 83 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHT--CSSHHHHHHHHHHHHHSCC------
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccCC------------chHHHHHHHHHc--CCCHHHHHHHHHHHHHhcc------
Confidence 46778888899999999999999986531 234566667777 7889999999999987421
Q ss_pred CChhHHHHHHHHHHh-hhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHH
Q 006253 212 SNDMERDYIMRVVCE-ATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDE 290 (653)
Q Consensus 212 ~~~~~~~~il~~l~~-~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 290 (653)
.......+++.+.. ...++++.+|..++.+|..+....+ .+.+.+++.+...+++.++.+|..++..+..+...
T Consensus 84 -~~~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~ 158 (280)
T 1oyz_A 84 -CKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVINDK 158 (280)
T ss_dssp -CTTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---
T ss_pred -ccccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCH
Confidence 11112446666653 4578899999999999998875433 22346777788888999999999999887766531
Q ss_pred HHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCCchhchHH
Q 006253 291 EIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMP 370 (653)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~ 370 (653)
..+|.+...+.+ .++.+|..|..+|+.+.. --+..++
T Consensus 159 -----------------------------~~~~~L~~~l~d---------~~~~vr~~a~~aL~~~~~-----~~~~~~~ 195 (280)
T 1oyz_A 159 -----------------------------ATIPLLINLLKD---------PNGDVRNWAAFAININKY-----DNSDIRD 195 (280)
T ss_dssp -----------------------------CCHHHHHHHHTC---------SSHHHHHHHHHHHHHHTC-----CCHHHHH
T ss_pred -----------------------------HHHHHHHHHHcC---------CCHHHHHHHHHHHHhhcc-----CcHHHHH
Confidence 134555555431 235799999999987631 1345667
Q ss_pred HHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccc
Q 006253 371 FVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPI 450 (653)
Q Consensus 371 ~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 450 (653)
.+...+.++++.+|..++.+|+.+... ..++.++..+ +|++ ||..+.++|+.+..
T Consensus 196 ~L~~~l~d~~~~vR~~A~~aL~~~~~~-----------~~~~~L~~~l-~d~~--vr~~a~~aL~~i~~----------- 250 (280)
T 1oyz_A 196 CFVEMLQDKNEEVRIEAIIGLSYRKDK-----------RVLSVLCDEL-KKNT--VYDDIIEAAGELGD----------- 250 (280)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTTCG-----------GGHHHHHHHH-TSSS--CCHHHHHHHHHHCC-----------
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhCCH-----------hhHHHHHHHh-cCcc--HHHHHHHHHHhcCc-----------
Confidence 777888899999999999999988631 2457777888 7765 89999999998743
Q ss_pred cCccchHHHHHHHHHhccc--hhhHHHHHHHHHH
Q 006253 451 INQGNCQQIISVLLQSMKD--VPNVAEKACGALY 482 (653)
Q Consensus 451 ~~~~~~~~il~~l~~~l~d--~~~v~~~a~~al~ 482 (653)
. .++|.|...+.+ ++.++..+..++.
T Consensus 251 --~----~~~~~L~~~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 251 --K----TLLPVLDTMLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp --G----GGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred --h----hhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence 1 336666666654 4566666655543
No 58
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.26 E-value=9.4e-09 Score=112.39 Aligned_cols=305 Identities=12% Similarity=0.182 Sum_probs=223.1
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCC--CCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcc-cccchh
Q 006253 94 KSFILKTLSSPAHDARSTASQVVAKVAGIELPH--KQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSS-DAVEQD 170 (653)
Q Consensus 94 ~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~--~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~-~~~~~~ 170 (653)
.+.+++.+...+..=+..++..++.+.....+. -.| .+++.+...+.+.... ++|+.++..+++.... ... .+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~-e~ 91 (986)
T 2iw3_A 16 LEELFQKLSVATADNRHEIASEVASFLNGNIIEHDVPE-HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSV-EP 91 (986)
T ss_dssp HHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSSCCH-HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTT-HH
T ss_pred HHHHHhhccccchhHHHHHHHHHHHHHhccccccccch-hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCc-cc
Confidence 344667676644444567777777776644221 133 6888888887665333 9999999999987632 123 56
Q ss_pred hHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcC-CcHHHHHHHHHHHHHHHHH
Q 006253 171 HVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLS-PEVKIRQAAFECLVAISST 249 (653)
Q Consensus 171 ~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~l~~l~~~ 249 (653)
++-.++|.++.... |....||.+|..+...++..++.. ....++|.++..+.. ..|..+..++.++..+++.
T Consensus 92 ~~~~~~~~~~~~~~--dk~~~v~~aa~~~~~~~~~~~~~~-----a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~ 164 (986)
T 2iw3_A 92 YIVQLVPAICTNAG--NKDKEIQSVASETLISIVNAVNPV-----AIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDA 164 (986)
T ss_dssp HHHTTHHHHHHHTT--CSSHHHHHHHHHHHHHHHHHSCGG-----GHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHhCCHH-----HHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence 77778999999888 888999999999999888765432 125688888887754 4799999999999999999
Q ss_pred hHHhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHh
Q 006253 250 YYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETL 329 (653)
Q Consensus 250 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l 329 (653)
.++.+...+++++|.+...+.|..++++.+|...+..+|... . ..-+.+.+|.++++|
T Consensus 165 ~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~-------~---------------n~d~~~~~~~~~~~~ 222 (986)
T 2iw3_A 165 AKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETV-------D---------------NKDIERFIPSLIQCI 222 (986)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGC-------C---------------CTTTGGGHHHHHHHH
T ss_pred hHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcC-------C---------------CcchhhhHHHHHHHh
Confidence 899999999999999999999999999999998888887531 1 111234456666666
Q ss_pred hhccCCccCCCccccHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHH
Q 006253 330 LKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNI 409 (653)
Q Consensus 330 ~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~ 409 (653)
.++++ .-+|+. .|++. .+..+.-.+-+.-
T Consensus 223 ~~p~~--------------~~~~~~-----------------------------------~l~~~--tfv~~v~~~~l~~ 251 (986)
T 2iw3_A 223 ADPTE--------------VPETVH-----------------------------------LLGAT--TFVAEVTPATLSI 251 (986)
T ss_dssp HCTTH--------------HHHHHH-----------------------------------HHTTC--CCCSCCCHHHHHH
T ss_pred cChhh--------------hHHHHH-----------------------------------HhhcC--eeEeeecchhHHH
Confidence 53211 111222 22211 1123445677888
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc--hhhHHHHHHHHHHHHHhc
Q 006253 410 ALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD--VPNVAEKACGALYFLAQG 487 (653)
Q Consensus 410 l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d--~~~v~~~a~~al~~~~~~ 487 (653)
+.|.+.+.| ++..-.+++.++..+.++++...+ |....+|++.++|.+...... +|.+|+.|..|+..+.+.
T Consensus 252 ~~p~l~r~l-~~~~~~~~r~~~~~~~n~~~lv~~-----~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~ 325 (986)
T 2iw3_A 252 MVPLLSRGL-NERETGIKRKSAVIIDNMCKLVED-----PQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRV 325 (986)
T ss_dssp HHHHHHHHH-TSSSHHHHHHHHHHHHHHHTTCCC-----HHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhh-ccCcchhheeeEEEEcchhhhcCC-----HHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHh
Confidence 899999999 998889999999999999998865 556678888889988887764 699999999999988765
Q ss_pred c
Q 006253 488 F 488 (653)
Q Consensus 488 ~ 488 (653)
-
T Consensus 326 ~ 326 (986)
T 2iw3_A 326 G 326 (986)
T ss_dssp H
T ss_pred h
Confidence 3
No 59
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.25 E-value=2.6e-09 Score=110.30 Aligned_cols=354 Identities=14% Similarity=0.073 Sum_probs=215.6
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcC
Q 006253 133 IGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFS 212 (653)
Q Consensus 133 ~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~ 212 (653)
+|.+...+.++++..+..|+.+|..++..-++... .-.-...+|.+++.+. .++++++..|+.+|.++....+
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~-~i~~~g~i~~Lv~lL~--s~~~~~~~~A~~aL~nLa~~~~---- 76 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQ-QVYQLGGICKLVDLLR--SPNQNVQQAAAGALRNLVFRST---- 76 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHH-HHHHTTHHHHHHHHTT--SSCHHHHHHHHHHHHHHHSSCH----
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHH-HHHHcCCHHHHHHHHc--CCCHHHHHHHHHHHHHHhcCCH----
Confidence 57788888999999999999999998864311110 1122457889999998 6789999999999999775211
Q ss_pred ChhHHH-----HHHHHHHhhhc-CCcHHHHHHHHHHHHHHHHHhHHhhHH-hHHHHHHHHHHHh--------hc------
Q 006253 213 NDMERD-----YIMRVVCEATL-SPEVKIRQAAFECLVAISSTYYEKLAP-YIQDIFNITAKAV--------RE------ 271 (653)
Q Consensus 213 ~~~~~~-----~il~~l~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~~-~l~~l~~~~~~~~--------~~------ 271 (653)
..+. ..++.|..++. .++++++..++.+|..++.. ++ .+. .+...+|.+++.+ .+
T Consensus 77 --~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~-~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~ 152 (457)
T 1xm9_A 77 --TNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DE-LKEELIADALPVLADRVIIPFSGWCDGNSNMSR 152 (457)
T ss_dssp --HHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SS-THHHHHHHHHHHHHHHTTHHHHTCC--------
T ss_pred --HHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HH-hHHHHHhccHHHHHHHHhccccccccCccchhc
Confidence 1122 24677788887 67899999999999999876 22 222 2236777777776 22
Q ss_pred --CChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccccHhhhH
Q 006253 272 --DEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAG 349 (653)
Q Consensus 272 --~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a 349 (653)
.++++...|...+..++.. .+. ...+.. .+..+|.|+..+...-.+.+.++ .....+
T Consensus 153 e~~~~~v~~~a~~aL~nLs~~-~~~----------------~~~i~~-~~g~i~~Lv~lL~~~~~~~~~~~---~~~e~a 211 (457)
T 1xm9_A 153 EVVDPEVFFNATGCLRNLSSA-DAG----------------RQTMRN-YSGLIDSLMAYVQNCVAASRCDD---KSVENC 211 (457)
T ss_dssp -CCCHHHHHHHHHHHHHHTTS-HHH----------------HHHHTT-STTHHHHHHHHHHHHHHHTCTTC---TTHHHH
T ss_pred ccccHHHHHHHHHHHHHHccC-HHH----------------HHHHHH-cCCCHHHHHHHHHhhccccCCch---HHHHHH
Confidence 2456666888888888764 111 111110 01244444444432100000001 111222
Q ss_pred HHHHHHHHh----------------------------hcC----------------------C--C--chhchHHHHHhh
Q 006253 350 GTCLGLVAR----------------------------TVG----------------------D--D--IVPLVMPFVEEN 375 (653)
Q Consensus 350 ~~~L~~l~~----------------------------~~~----------------------~--~--~~~~l~~~l~~~ 375 (653)
..+|..++. +++ + . +-+..++.+...
T Consensus 212 ~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~l 291 (457)
T 1xm9_A 212 MCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNL 291 (457)
T ss_dssp HHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHH
T ss_pred HHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHH
Confidence 222222210 000 0 0 011233444444
Q ss_pred hc-CcchhhHHHHHHHHHHhhcCCCCC--cc-hHHH--HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCcc
Q 006253 376 IT-KQEWRQREAATYAFGSILEGPSPE--KL-VPLV--NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETP 449 (653)
Q Consensus 376 l~-~~~~~~r~aal~~l~~i~~~~~~~--~~-~~~l--~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 449 (653)
+. +.+...+++|+++|+.++.+..+. .+ ...+ ...+|.++..+ .+++..++..|+|+|++++..-.
T Consensus 292 L~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL-~~~~~~v~~~A~~aL~nls~~~~------- 363 (457)
T 1xm9_A 292 MGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLL-QSGNSDVVRSGASLLSNMSRHPL------- 363 (457)
T ss_dssp HHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHT-TCSCHHHHHHHHHHHHHHHTSGG-------
T ss_pred HhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHH-hCCCHhHHHHHHHHHHHHhcCHH-------
Confidence 43 345789999999999999764211 11 1122 25689999999 99999999999999999987432
Q ss_pred ccCccchHHHHHHHHHhccc-h------hhHHHHHHHHHHHHHhcccCCCCCCCCCchhH--HHHHHHHHHhccccccch
Q 006253 450 IINQGNCQQIISVLLQSMKD-V------PNVAEKACGALYFLAQGFEDAISPSSPLTPFF--QEIVQALLTVTHREDAGE 520 (653)
Q Consensus 450 ~~~~~~~~~il~~l~~~l~d-~------~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l--~~i~~~L~~~l~~~~~~~ 520 (653)
.....-...++.|++.+.. + ..+...++.++.+++..-. .....+ ...++.|..++.... +
T Consensus 364 -~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~-------~~~~~i~~~g~l~~L~~L~~~~~--~ 433 (457)
T 1xm9_A 364 -LHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQP-------QLAKQYFSSSMLNNIINLCRSSA--S 433 (457)
T ss_dssp -GHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCT-------HHHHHHCCHHHHHHHHHHHHCTT--C
T ss_pred -HHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCH-------HHHHHHHHcCCHHHHHHHHcCCC--c
Confidence 1222335678888888874 2 3577889999999885411 112222 256777777777652 2
Q ss_pred hchHHHHHHHHHHHHH
Q 006253 521 SRLRTAAYETLNEVVR 536 (653)
Q Consensus 521 ~~~~~~~~~~l~~l~~ 536 (653)
..++..|...|..+..
T Consensus 434 ~~i~~~A~~~L~~~~~ 449 (457)
T 1xm9_A 434 PKAAEAARLLLSDMWS 449 (457)
T ss_dssp HHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHc
Confidence 4677788888876653
No 60
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.17 E-value=1.3e-08 Score=105.80 Aligned_cols=365 Identities=12% Similarity=0.059 Sum_probs=222.2
Q ss_pred CCC-chHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHH
Q 006253 127 KQW-PELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALG 205 (653)
Q Consensus 127 ~~~-~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~ 205 (653)
..| ..-++.+++.+.++++..+..|..+|..++...+.... .-.-...+|.+++.|. .++.+++..|+.+|.++..
T Consensus 43 ~~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~-~V~~~G~Ip~LV~LL~--s~~~~vq~~Aa~AL~nLa~ 119 (584)
T 3l6x_A 43 PNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKT-DVRKLKGIPVLVGLLD--HPKKEVHLGACGALKNISF 119 (584)
T ss_dssp CCCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH-HHHHTTHHHHHHHGGG--CSSHHHHHHHHHHHHHHTS
T ss_pred CCcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHH-HHHHcCCcHHHHHHHC--CCCHHHHHHHHHHHHHHHc
Confidence 355 45679999999999999999999999988864311111 1112346799999998 6889999999999999764
Q ss_pred hhhhhcCChhHHH-----HHHHHHHhhhcC-CcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHh----------
Q 006253 206 FAQANFSNDMERD-----YIMRVVCEATLS-PEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAV---------- 269 (653)
Q Consensus 206 ~~~~~~~~~~~~~-----~il~~l~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~---------- 269 (653)
.- ....+. ..++.|..++.. .+.+++..+..+|..++.... .-......-+|.+++.+
T Consensus 120 ~~-----~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~-~k~~I~~~alp~Lv~LL~~p~sg~~~~ 193 (584)
T 3l6x_A 120 GR-----DQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDS-IKMEIVDHALHALTDEVIIPHSGWERE 193 (584)
T ss_dssp SS-----CHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGG-GHHHHHHHTHHHHHHHTHHHHHCCC--
T ss_pred cC-----CHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCch-hhHHHHhccHHHHHHHHhccccccccc
Confidence 21 011112 246677777764 678889999888888876332 11111122334443322
Q ss_pred --------hcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCc
Q 006253 270 --------REDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEG 341 (653)
Q Consensus 270 --------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~ 341 (653)
...+++++..|..++..++....+ .+..+.. ..-+++.|+..+...-.+.+ .
T Consensus 194 ~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~----------------~R~~i~~-~~Gli~~LV~~L~~~~~~~~---~ 253 (584)
T 3l6x_A 194 PNEDCKPRHIEWESVLTNTAGCLRNVSSERSE----------------ARRKLRE-CDGLVDALIFIVQAEIGQKD---S 253 (584)
T ss_dssp --------CCCCHHHHHHHHHHHHHHTSSCHH----------------HHHHHHH-STTHHHHHHHHHHHHHHTTC---C
T ss_pred ccccccccccccHHHHHHHHHHHHHHhcCCHH----------------HHHHHHH-cCCcHHHHHHHHHHhhcccC---c
Confidence 123578888899888888742110 0111111 12234444444432100000 0
Q ss_pred cccHhhhHHHHHHHHHhhc----C---------------------C--Cc--hhchHHHHHhhhc-CcchhhHHHHHHHH
Q 006253 342 AWNIAMAGGTCLGLVARTV----G---------------------D--DI--VPLVMPFVEENIT-KQEWRQREAATYAF 391 (653)
Q Consensus 342 ~~~~r~~a~~~L~~l~~~~----~---------------------~--~~--~~~l~~~l~~~l~-~~~~~~r~aal~~l 391 (653)
+......|..+|..++... + . .. -+..++.+...+. +.++..+++|+.+|
T Consensus 254 ~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL 333 (584)
T 3l6x_A 254 DSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAI 333 (584)
T ss_dssp SCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 0123344555555554331 0 0 00 1233444455553 45688999999999
Q ss_pred HHhhcCCCCC--cchHHH--HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhc
Q 006253 392 GSILEGPSPE--KLVPLV--NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSM 467 (653)
Q Consensus 392 ~~i~~~~~~~--~~~~~l--~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l 467 (653)
..++.+..+. .+...+ ...+|.|+..| .+++..++..|+++|++++..... ....-...+|.|++.|
T Consensus 334 ~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL-~s~~~~v~~~A~~aL~nLs~~~~~--------~~~I~~g~ip~LV~LL 404 (584)
T 3l6x_A 334 QNLCAGRWTYGRYIRSALRQEKALSAIADLL-TNEHERVVKAASGALRNLAVDARN--------KELIGKHAIPNLVKNL 404 (584)
T ss_dssp HHHHSSCSHHHHHHHHHHTSHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHTTCSC--------HHHHHHHHHHHHHHTS
T ss_pred HHHHcCCccccHHHHHHHHHcCcHHHHHHHH-cCCCHHHHHHHHHHHHHHhCChhH--------HHHHHhCCHHHHHHHh
Confidence 9998763211 111122 35689999999 999999999999999999985431 2334467889999988
Q ss_pred cc-h--------hhHHHHHHHHHHHHHhcccCCCCCCCCCchhH-HHHHHHHHHhccccccchhchHHHHHHHHHHHHH
Q 006253 468 KD-V--------PNVAEKACGALYFLAQGFEDAISPSSPLTPFF-QEIVQALLTVTHREDAGESRLRTAAYETLNEVVR 536 (653)
Q Consensus 468 ~d-~--------~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l-~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~ 536 (653)
.+ + ..++..||.++.+++..-. ....... ...++.|+.++..... ...++..|..+|..++.
T Consensus 405 ~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~------~~~~~I~~~g~I~~Lv~LL~s~~~-~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 405 PGGQQNSSWNFSEDTVISILNTINEVIAENL------EAAKKLRETQGIEKLVLINKSGNR-SEKEVRAAALVLQTIWG 476 (584)
T ss_dssp SSSSCSGGGTCCHHHHHHHHHHHHHHHTTCH------HHHHHHHHTTHHHHHHHHHTCSSS-CHHHHHHHHHHHHHHHT
T ss_pred cCCcccccccchHHHHHHHHHHHHHHhcCCH------HHHHHHHHCCChHHHHHHHhCCCC-ChHHHHHHHHHHHHHHc
Confidence 74 2 3578889999999885311 1111122 2568888888876421 24567788888888864
No 61
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.15 E-value=3.6e-10 Score=107.19 Aligned_cols=231 Identities=16% Similarity=0.146 Sum_probs=162.8
Q ss_pred HHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhHH-HHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhc
Q 006253 220 IMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQ-DIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEY 298 (653)
Q Consensus 220 il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 298 (653)
.++.+...+.+++++++..++.+|..++....+.....+. ..++.+++.+++.+++++..++..+..++....+.
T Consensus 13 ~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~---- 88 (252)
T 4db8_A 13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ---- 88 (252)
T ss_dssp SHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH----
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHH----
Confidence 3455566666788999999999998877764444444443 68899999999989999999999998888521100
Q ss_pred CCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCC---ch-hchHHHHHh
Q 006253 299 GGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDD---IV-PLVMPFVEE 374 (653)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~---~~-~~l~~~l~~ 374 (653)
...+.. ...+|.++..+.. +++.+|..|..+|..++...... +. .-.++.+.+
T Consensus 89 -----------~~~i~~---~g~i~~L~~lL~~---------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 145 (252)
T 4db8_A 89 -----------IQAVID---AGALPALVQLLSS---------PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ 145 (252)
T ss_dssp -----------HHHHHH---TTHHHHHHHGGGC---------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH
T ss_pred -----------HHHHHH---cCCHHHHHHHHcC---------CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHH
Confidence 001111 1367777777753 12578889999999887643211 11 236677778
Q ss_pred hhcCcchhhHHHHHHHHHHhhcCCCCCcchHHH-HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCc
Q 006253 375 NITKQEWRQREAATYAFGSILEGPSPEKLVPLV-NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQ 453 (653)
Q Consensus 375 ~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l-~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~ 453 (653)
.+.++++.+|..++++|+.++.+. +....... ...++.++..+ +++++.+|..|+++|++++..... ...
T Consensus 146 lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~-------~~~ 216 (252)
T 4db8_A 146 LLSSPNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNE-------QKQ 216 (252)
T ss_dssp GGGCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHGG-GCSSHHHHHHHHHHHHHHTTSCHH-------HHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCCHHHHHHHH-CCCCHHHHHHHHHHHHHHhcCCHH-------HHH
Confidence 888899999999999999999763 22222222 35688999999 999999999999999999853221 011
Q ss_pred cch-HHHHHHHHHhccc-hhhHHHHHHHHHHHHHh
Q 006253 454 GNC-QQIISVLLQSMKD-VPNVAEKACGALYFLAQ 486 (653)
Q Consensus 454 ~~~-~~il~~l~~~l~d-~~~v~~~a~~al~~~~~ 486 (653)
... ..+++.+...+.+ ++.++..|+++|.+++.
T Consensus 217 ~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 217 AVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 111 2477888888886 78999999999998763
No 62
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.14 E-value=1.3e-09 Score=103.33 Aligned_cols=232 Identities=14% Similarity=0.131 Sum_probs=166.1
Q ss_pred HHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhHH-HHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcC
Q 006253 221 MRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQ-DIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYG 299 (653)
Q Consensus 221 l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 299 (653)
++.+...+.+++++++..++.+|..++...++....... ..++.+++.+++.+++++..++..+..++....+.
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~----- 78 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA----- 78 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH-----
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHH-----
Confidence 566677777888999999999999998876644444443 58888999999999999999999988888531100
Q ss_pred CCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCC---Cc-hhchHHHHHhh
Q 006253 300 GDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGD---DI-VPLVMPFVEEN 375 (653)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~---~~-~~~l~~~l~~~ 375 (653)
...+.+ ...+|.++..+.. ++..+|..|..+|..++...++ .+ -.-.++.+.+.
T Consensus 79 ----------~~~~~~---~~~i~~l~~ll~~---------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~ 136 (252)
T 4hxt_A 79 ----------IKAIVD---AGGVEVLVKLLTS---------TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKL 136 (252)
T ss_dssp ----------HHHHHH---TTHHHHHHHHTTC---------SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred ----------HHHHHH---CCCHHHHHHHHcC---------CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH
Confidence 001111 2356777776652 1246888899999988853221 11 12356677778
Q ss_pred hcCcchhhHHHHHHHHHHhhcCCCCCcchHHH-HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCcc
Q 006253 376 ITKQEWRQREAATYAFGSILEGPSPEKLVPLV-NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQG 454 (653)
Q Consensus 376 l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l-~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~ 454 (653)
+.++++..|..++.+++.++.+. +....... ...++.++..+ .++++.+|..|+++|++++..... ....
T Consensus 137 l~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~-------~~~~ 207 (252)
T 4hxt_A 137 LTSTDSEVQKEAARALANIASGP-DEAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPTS-------AIKA 207 (252)
T ss_dssp TTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSBHH-------HHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCcCHHHHHHHH-CCCCHHHHHHHHHHHHHHHcCCHH-------HHHH
Confidence 88899999999999999999763 22212222 35789999999 999999999999999999863221 0111
Q ss_pred -chHHHHHHHHHhccc-hhhHHHHHHHHHHHHHhcc
Q 006253 455 -NCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGF 488 (653)
Q Consensus 455 -~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~~~ 488 (653)
.-..+++.+.+.+.+ ++.++..|+++|.++....
T Consensus 208 l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 208 IVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG 243 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCC
Confidence 113467888888886 7899999999999999864
No 63
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.13 E-value=4.4e-07 Score=104.78 Aligned_cols=447 Identities=11% Similarity=0.035 Sum_probs=237.3
Q ss_pred CChHHHHHHHHHHHHHHhh----CcchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhccCCChHHH
Q 006253 15 VDGTVRKQAEESLKQYQEQ----NLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVK 90 (653)
Q Consensus 15 ~d~~~r~~A~~~L~~~~~~----~~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~ 90 (653)
+++.+|.+.-+.+.++.+. +||+++..+++.+.+ ++..+..+..+|+...+... .+..+....+
T Consensus 108 ~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~---~~~~~e~~L~iL~~L~Eev~---------~~~~~~~~r~ 175 (1204)
T 3a6p_A 108 EENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQ---GETQTELVMFILLRLAEDVV---------TFQTLPPQRR 175 (1204)
T ss_dssp SCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHHH---------TSCCSCHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHc---------cccchHHHHH
Confidence 3577888888888876655 588999999988865 34567778777777654211 1111222222
Q ss_pred H-----------HHHHHHHHhcCC-------------------CChHHHHHHHHHHHHHHhhhcCC----CCCchHHHHH
Q 006253 91 A-----------QIKSFILKTLSS-------------------PAHDARSTASQVVAKVAGIELPH----KQWPELIGAL 136 (653)
Q Consensus 91 ~-----------~i~~~ll~~l~~-------------------~~~~vr~~~~~~l~~ia~~~~~~----~~~~~l~~~l 136 (653)
. .|...+.+.+.+ ++..++..+..++....... |. ..-+.+++.+
T Consensus 176 ~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi-~~~~i~~~~~~ll~~l 254 (1204)
T 3a6p_A 176 RDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWV-SMSHITAENCKLLEIL 254 (1204)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTS-CHHHHHTTTSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhcc-CHHHHHhccchHHHHH
Confidence 2 222223333322 01223333444433222211 10 0112377777
Q ss_pred HHhhcCCChhHHHHHHHHHHHHHhhhc-cc----ccchhhH-hHHHHHHHhccc--C----CCCCHHHHHHHHHHHHHHH
Q 006253 137 LSNIHQLPPHTKQATLETLGYICEEVS-SD----AVEQDHV-NKILTAVVQGMN--A----SESNNDVRLAATRALYNAL 204 (653)
Q Consensus 137 ~~~l~~~~~~~~~~~l~~l~~l~~~~~-~~----~~~~~~~-~~l~~~l~~~l~--~----~~~~~~vr~~a~~~l~~~~ 204 (653)
+..+. ++..|..|+.||..++.... ++ .+ ..+ ...+..+++... + .+.+.++++...+.+..+.
T Consensus 255 ~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li--~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg 330 (1204)
T 3a6p_A 255 CLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLM--VLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALG 330 (1204)
T ss_dssp HHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGG--GGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHH--HHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 76665 56789999999999987531 11 11 111 111122222221 0 1334566666666666655
Q ss_pred Hhhhhhc------CChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHh----HHhhHHhHHHHHHHH---HHHhhc
Q 006253 205 GFAQANF------SNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTY----YEKLAPYIQDIFNIT---AKAVRE 271 (653)
Q Consensus 205 ~~~~~~~------~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~----~~~~~~~l~~l~~~~---~~~~~~ 271 (653)
......+ ........+++.++.++++++.++...++..|..+++.. ...+.+++..+++.+ +..++.
T Consensus 331 ~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~y 410 (1204)
T 3a6p_A 331 NQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGF 410 (1204)
T ss_dssp HHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4322110 112234678999999998899999989999999887653 234667888888888 333332
Q ss_pred CChh------------------------HHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHH
Q 006253 272 DEEP------------------------VALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLE 327 (653)
Q Consensus 272 ~~~~------------------------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 327 (653)
++.+ +|....+++..++... -...++.+.+.+..
T Consensus 411 p~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~----------------------p~~~l~~v~~~l~~ 468 (1204)
T 3a6p_A 411 PSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLD----------------------PKTSFQMAGEWLKY 468 (1204)
T ss_dssp SSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHC----------------------HHHHHHHHHHHHHH
T ss_pred ccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcC----------------------HHHHHHHHHHHHHH
Confidence 2111 1111111111111100 00011112222222
Q ss_pred HhhhccCCc----------------cCCCccccHhhhHHHHHHHHHhhc---C--CC----chhchHHHHHhhhcCcchh
Q 006253 328 TLLKQEEDQ----------------DQDEGAWNIAMAGGTCLGLVARTV---G--DD----IVPLVMPFVEENITKQEWR 382 (653)
Q Consensus 328 ~l~~~~ed~----------------~~d~~~~~~r~~a~~~L~~l~~~~---~--~~----~~~~l~~~l~~~l~~~~~~ 382 (653)
.+...-+.. ......|....+....++.+.+.+ . +. +++.+++.+... ...++.
T Consensus 469 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~-~~~~p~ 547 (1204)
T 3a6p_A 469 QLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNF-DTKDPL 547 (1204)
T ss_dssp HHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHC-CCSCHH
T ss_pred HHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhC-CCCChH
Confidence 222110000 001134655666666676666544 1 11 233444433221 234678
Q ss_pred hHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCC------------CchHHHHHHHHHHHHHHhhhccCCCCccc
Q 006253 383 QREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQD------------PNNHVKDTTAWTLGRMFEFLHGSTLETPI 450 (653)
Q Consensus 383 ~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d------------~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 450 (653)
.|..++.+++.+..... .-..+++.++..|+..+ .+ .+..||.+|+.++.+++..++.
T Consensus 548 l~~~~i~~l~~l~~~~~--~~p~~L~~vL~~ll~~l-~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~------- 617 (1204)
T 3a6p_A 548 ILSCVLTNVSALFPFVT--YRPEFLPQVFSKLFSSV-TFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQ------- 617 (1204)
T ss_dssp HHHHHHHHHHHHGGGGG--TCGGGHHHHHHHHHHHH-HCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHH-------
T ss_pred HHHHHHHHHHHHHHHHh--cCchHHHHHHHHHHHhh-ccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhH-------
Confidence 99999999998877542 22357888888888777 55 3458999999999999998863
Q ss_pred cCccchHHHHHHHHHhccc-h---hhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccc
Q 006253 451 INQGNCQQIISVLLQSMKD-V---PNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHR 515 (653)
Q Consensus 451 ~~~~~~~~il~~l~~~l~d-~---~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~ 515 (653)
...+|++.+...+...+.. . ..-+..-..++..+...+++ ......|+..+++.++..+.+
T Consensus 618 ~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~----~~~~~~~l~~ll~P~~~~w~~ 682 (1204)
T 3a6p_A 618 LVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKN----YERQKVFLEELMAPVASIWLS 682 (1204)
T ss_dssp HHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCC----HHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHHHHHHHcc
Confidence 3568888888877665541 1 22223334445544443322 122344577777777665553
No 64
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.12 E-value=1.1e-09 Score=103.87 Aligned_cols=231 Identities=16% Similarity=0.148 Sum_probs=162.2
Q ss_pred HHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhH
Q 006253 176 LTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLA 255 (653)
Q Consensus 176 ~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 255 (653)
++.+...+. ++++++|..|+.++..++........ .......++.+..++.+++++++..++.+|..++...++...
T Consensus 14 ~~~~~~~L~--s~~~~~~~~a~~~L~~~l~~~~~~~~-~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 14 LPQMTQQLN--SDDMQEQLSATRKFSQILSDGNEQIQ-AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp HHHHHHHHH--SSCSSHHHHHHHHHHHHHHHHHHHHH-HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHHHHHHcCCCchHH-HHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 444555566 57788999999999876654211110 011134678888899888899999999999999875544333
Q ss_pred HhHH-HHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhh-hhhhHHHHHHHhhhcc
Q 006253 256 PYIQ-DIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHA-LPVLVPLLLETLLKQE 333 (653)
Q Consensus 256 ~~l~-~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~l~~~l~~~l~~~~ 333 (653)
.... ..++.++..+++.+++++..|+..+..++.... .....+ -...+|.++..+..
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-------------------~~~~~~~~~~~i~~L~~lL~~-- 149 (252)
T 4db8_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-------------------EQIQAVIDAGALPALVQLLSS-- 149 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH-------------------HHHHHHHHTTHHHHHHHGGGC--
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCc-------------------hHHHHHHHCCCHHHHHHHHhC--
Confidence 3333 488899999999999999999999988875321 110111 12467788777752
Q ss_pred CCccCCCccccHhhhHHHHHHHHHhhcCCC---c-hhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHH-
Q 006253 334 EDQDQDEGAWNIAMAGGTCLGLVARTVGDD---I-VPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVN- 408 (653)
Q Consensus 334 ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~---~-~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~- 408 (653)
+++.+|..|..+|..++...++. + -.-+++.+.+.+.++++.+|..++.+|+.++.+. +........
T Consensus 150 -------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~ 221 (252)
T 4db8_A 150 -------PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEA 221 (252)
T ss_dssp -------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSC-HHHHHHHHHT
T ss_pred -------CCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHC
Confidence 12578899999999888643211 1 1345667777888889999999999999999653 233333333
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHh
Q 006253 409 IALNFMLTALMQDPNNHVKDTTAWTLGRMFE 439 (653)
Q Consensus 409 ~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~ 439 (653)
..++.+...+ +++++.+|..|+++|++++.
T Consensus 222 g~i~~L~~ll-~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 222 GALEKLEQLQ-SHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp THHHHHHTTT-TCSSSHHHHTHHHHHHTTC-
T ss_pred CcHHHHHHHh-CCCCHHHHHHHHHHHHHHhc
Confidence 4788899989 99999999999999998864
No 65
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.11 E-value=7.7e-09 Score=106.80 Aligned_cols=365 Identities=12% Similarity=0.051 Sum_probs=222.4
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCC-----chHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccch
Q 006253 95 SFILKTLSSPAHDARSTASQVVAKVAGIELPHKQW-----PELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQ 169 (653)
Q Consensus 95 ~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~-----~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~ 169 (653)
+.+++.|.++++.++..++.++..++... + +.+ ...+|.|.+.+.++++.++..|..+|..++... ++ . +
T Consensus 5 ~~lv~~L~s~~~~~q~~A~~~L~~l~~~~-~-~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~-~~-~-k 79 (457)
T 1xm9_A 5 PKAVQYLSSQDEKYQAIGAYYIQHTCFQD-E-SAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRS-TT-N-K 79 (457)
T ss_dssp HHHHHHHHSSCTHHHHHHHHHHHHHTSSC-S-SHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC-HH-H-H
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHcCC-h-HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-HH-H-H
Confidence 46788888999999999999999998644 2 122 467899999999999999999999999998742 22 1 1
Q ss_pred hh--HhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhh--------cC--------C
Q 006253 170 DH--VNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEAT--------LS--------P 231 (653)
Q Consensus 170 ~~--~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~--------~~--------~ 231 (653)
.. -...+|.+++.+.. .++++++..|..+|.++... ++. . .......++.|..++ .. .
T Consensus 80 ~~i~~~G~i~~Lv~lL~~-~~~~~~~~~a~~aL~nLa~~-~~~-~-~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~ 155 (457)
T 1xm9_A 80 LETRRQNGIREAVSLLRR-TGNAEIQKQLTGLLWNLSST-DEL-K-EELIADALPVLADRVIIPFSGWCDGNSNMSREVV 155 (457)
T ss_dssp HHHHHTTCHHHHHHHHTT-CCCHHHHHHHHHHHHHHHTS-SST-H-HHHHHHHHHHHHHHTTHHHHTCC---------CC
T ss_pred HHHHHcCCHHHHHHHHhh-CCCHHHHHHHHHHHHHHhcC-HHh-H-HHHHhccHHHHHHHHhccccccccCccchhcccc
Confidence 11 13457888888873 35789999999999998754 211 0 011124566666666 21 3
Q ss_pred cHHHHHHHHHHHHHHHHHhHHhhHHhHH--HHHHHHHHHhhc------CChhHHHHHHHhHHHhhHHH-------Hhhhh
Q 006253 232 EVKIRQAAFECLVAISSTYYEKLAPYIQ--DIFNITAKAVRE------DEEPVALQAIEFWSSVCDEE-------IDILE 296 (653)
Q Consensus 232 ~~~~~~~~~~~l~~l~~~~~~~~~~~l~--~l~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~-------~~~~~ 296 (653)
++++...++.+|..++.. ++......+ ..++.++..+.+ .+..+...++..+..++... .....
T Consensus 156 ~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~ 234 (457)
T 1xm9_A 156 DPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLE 234 (457)
T ss_dssp CHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcc
Confidence 466777999999998875 432222221 455555555543 34455566665555443100 00000
Q ss_pred hcCC-CCCCCCCCchh-----------------------hHHHhh-hhhhHHHHHHHhhhccCCccCCCccccHhhhHHH
Q 006253 297 EYGG-DFSGDSDIPCF-----------------------YFIKHA-LPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGT 351 (653)
Q Consensus 297 ~~~~-~~~~~~~~~~~-----------------------~~~~~~-l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~ 351 (653)
.... .........|+ .-.+.+ -...++.++..|...++ ..++..|..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~--------~~~~e~a~~ 306 (457)
T 1xm9_A 235 YNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKK--------DATLEACAG 306 (457)
T ss_dssp HTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCC--------HHHHHHHHH
T ss_pred cccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCC--------HHHHHHHHH
Confidence 0000 00000000000 000000 12345555555553211 256778888
Q ss_pred HHHHHHhhcCC---C----ch--hchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCC
Q 006253 352 CLGLVARTVGD---D----IV--PLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDP 422 (653)
Q Consensus 352 ~L~~l~~~~~~---~----~~--~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~ 422 (653)
+|..++...+. . .+ ...+|.+.+.+.+++..+|..|+++|+.++.+. ......-...+|.++..| .+.
T Consensus 307 aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~--~~~~~i~~~~i~~Lv~lL-~~~ 383 (457)
T 1xm9_A 307 ALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP--LLHRVMGNQVFPEVTRLL-TSH 383 (457)
T ss_dssp HHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG--GGHHHHHHHTHHHHHHTT-TSC
T ss_pred HHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH--HHHHHHHHhhhHHHHHhc-cCC
Confidence 88888754322 0 11 245677778888999999999999999998752 322223356789999998 655
Q ss_pred c------hHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhcc-c-hhhHHHHHHHHHHHHHh
Q 006253 423 N------NHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMK-D-VPNVAEKACGALYFLAQ 486 (653)
Q Consensus 423 ~------~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~-d-~~~v~~~a~~al~~~~~ 486 (653)
+ ..+..+++++++++...-... ...-.-...++.|...+. + +.+++..|++.|.++..
T Consensus 384 ~~~~~~~~~v~~~~l~~l~ni~~~~~~~------~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~ 449 (457)
T 1xm9_A 384 TGNTSNSEDILSSACYTVRNLMASQPQL------AKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWS 449 (457)
T ss_dssp CSCSTTHHHHHHHHHHHHHHHHTTCTHH------HHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSS
T ss_pred CCCCCCcHHHHHHHHHHHHHHHhcCHHH------HHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHc
Confidence 3 368889999999987533210 001112356777777766 3 57899999999998864
No 66
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.11 E-value=5.4e-09 Score=98.93 Aligned_cols=233 Identities=17% Similarity=0.146 Sum_probs=171.3
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHhhCc--------chHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhH
Q 006253 4 EVTQILLNAQSVDGTVRKQAEESLKQYQEQNL--------PGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRK 75 (653)
Q Consensus 4 ~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~~--------~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~ 75 (653)
.+..+++.+.+++.++|..|-..|..+...++ .+.+..|++.+.++ ++.+|..|+..|.+..........
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTST--DSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHcCChHHHH
Confidence 57788888899999999999999988866532 36788888888863 699999999999997754221110
Q ss_pred HHhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCC---CCchHHHHHHHhhcCCChhHHHHHH
Q 006253 76 FELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHK---QWPELIGALLSNIHQLPPHTKQATL 152 (653)
Q Consensus 76 ~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~---~~~~l~~~l~~~l~~~~~~~~~~~l 152 (653)
.-......+.+++.+.++++.+|..++.+++.++....... .-...++.|.+.+.++++.++..++
T Consensus 81 -----------~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~ 149 (252)
T 4hxt_A 81 -----------AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAA 149 (252)
T ss_dssp -----------HHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHH
T ss_pred -----------HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHH
Confidence 00112356778899999999999999999999995321100 1136789999999999999999999
Q ss_pred HHHHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCc
Q 006253 153 ETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPE 232 (653)
Q Consensus 153 ~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~ 232 (653)
.+|+.++... +.....-.-...++.+.+.+. ++++.+|..|+.+|.++....+.... .......++.+..++.+++
T Consensus 150 ~~L~~l~~~~-~~~~~~~~~~~~i~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~-~l~~~~~i~~L~~ll~~~~ 225 (252)
T 4hxt_A 150 RALANIASGP-DEAIKAIVDAGGVEVLVKLLT--STDSEVQKEAARALANIASGPTSAIK-AIVDAGGVEVLQKLLTSTD 225 (252)
T ss_dssp HHHHHHTTSC-HHHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHTTSBHHHHH-HHHHTTHHHHHHHGGGCSC
T ss_pred HHHHHHHcCC-HHHHHHHHHCcCHHHHHHHHC--CCCHHHHHHHHHHHHHHHcCCHHHHH-HHHHCCCHHHHHHHHCCCc
Confidence 9999998754 222101112457888888888 68899999999999997753221110 0011346788888888899
Q ss_pred HHHHHHHHHHHHHHHHHhHHh
Q 006253 233 VKIRQAAFECLVAISSTYYEK 253 (653)
Q Consensus 233 ~~~~~~~~~~l~~l~~~~~~~ 253 (653)
++++..++.+|..+....+..
T Consensus 226 ~~v~~~a~~~L~~l~~~~~~~ 246 (252)
T 4hxt_A 226 SEVQKEAQRALENIKSGGWLE 246 (252)
T ss_dssp HHHHHHHHHHHHHHHHTCBCC
T ss_pred HHHHHHHHHHHHHHHcCCCcc
Confidence 999999999999999876543
No 67
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.09 E-value=1.7e-07 Score=99.05 Aligned_cols=404 Identities=11% Similarity=0.117 Sum_probs=244.9
Q ss_pred CChHHHHHHHHHHHHhcCC--CChHHHHHHHHHHHHHHhhhcCC-CCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhh
Q 006253 85 LDSSVKAQIKSFILKTLSS--PAHDARSTASQVVAKVAGIELPH-KQWPELIGALLSNIHQLPPHTKQATLETLGYICEE 161 (653)
Q Consensus 85 l~~~~~~~i~~~ll~~l~~--~~~~vr~~~~~~l~~ia~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~ 161 (653)
+.+..|+.|.+..++.|.. .+..+|..++.++.++.....+. ....++.+.+...+.+++...++.|+..|..+.-.
T Consensus 285 i~~~cR~~I~~~~~~~L~~~l~~~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~ 364 (778)
T 3opb_A 285 IDETMRTYITENYLQLLERSLNVEDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLK 364 (778)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTTSGGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTS
T ss_pred CCcHHHHHHHHhHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCC
Confidence 4455565555544444322 23588999999999998764331 23457888899999887766789999999987553
Q ss_pred hc-ccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcC----------------------Ch----
Q 006253 162 VS-SDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFS----------------------ND---- 214 (653)
Q Consensus 162 ~~-~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~----------------------~~---- 214 (653)
-+ .+.+ ..-..++..++..+++ ..+..+...++.++.++..+.+.... ..
T Consensus 365 ~~VKe~L--~~d~~~L~~Lv~llk~-~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~ 441 (778)
T 3opb_A 365 ASVKIMI--RSNESFTEILLTMIKS-QKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAA 441 (778)
T ss_dssp SHHHHHH--HHCHHHHHHHHHHHTT-TCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHH
T ss_pred HHHHHHH--HhCHHHHHHHHHHHhC-CCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccc
Confidence 21 1112 1124456666777663 24456778888888888765431100 00
Q ss_pred -hH----H------HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhHH-HHHHHHHHHhhcCChh---HHHH
Q 006253 215 -ME----R------DYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQ-DIFNITAKAVREDEEP---VALQ 279 (653)
Q Consensus 215 -~~----~------~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~---~~~~ 279 (653)
.. + ...++.|...+..+++.++..++++|..+... .+.-...++ ..++.++..+.+..+. .+..
T Consensus 442 ~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~ 520 (778)
T 3opb_A 442 KEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFIPQLAQQGAVKIILEYLANKQDIGEPIRIL 520 (778)
T ss_dssp HHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHH
T ss_pred hHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHH
Confidence 00 0 01567777777778999999999999999765 333233333 5677778777664433 7788
Q ss_pred HHHhHHHhhHHH-HhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCc-----cCCCccccHhhhHHHHH
Q 006253 280 AIEFWSSVCDEE-IDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQ-----DQDEGAWNIAMAGGTCL 353 (653)
Q Consensus 280 a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~-----~~d~~~~~~r~~a~~~L 353 (653)
|...+..+.... +... +........+|.|+..+....+.+ +++.-.--.+..|..+|
T Consensus 521 AA~ALArLlis~np~~~-----------------f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~AL 583 (778)
T 3opb_A 521 GCRALTRMLIFTNPGLI-----------------FKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLAL 583 (778)
T ss_dssp HHHHHHHHHHTSCHHHH-----------------SSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHH-----------------cCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHH
Confidence 888777776321 1100 000000135666666665211100 00010001255788888
Q ss_pred HHHHhhcC-------CCchh--chHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcc-hHHH----H---HHHHHHHH
Q 006253 354 GLVARTVG-------DDIVP--LVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKL-VPLV----N---IALNFMLT 416 (653)
Q Consensus 354 ~~l~~~~~-------~~~~~--~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~-~~~l----~---~l~~~ll~ 416 (653)
..++...+ ..++. ..++.+.+.+.+++..+|.+|+.+++.++... +.+ ..++ + +-++.++.
T Consensus 584 TNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~--e~i~~k~~~~~~~~~~~rL~lLV~ 661 (778)
T 3opb_A 584 TNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHP--LTIAAKFFNLENPQSLRNFNILVK 661 (778)
T ss_dssp HHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSG--GGTGGGTSCCSSHHHHHHHHHHHH
T ss_pred HHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCc--HHHHHHHHhhcCchhhccHHHHHH
Confidence 88888642 22444 37888888998888999999999999998753 222 1221 1 23678888
Q ss_pred HhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhcc---chhhHHHHHHHHHHHHHhcccCCCC
Q 006253 417 ALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMK---DVPNVAEKACGALYFLAQGFEDAIS 493 (653)
Q Consensus 417 ~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~---d~~~v~~~a~~al~~~~~~~~~~~~ 493 (653)
.+ +..+..+|.+|+++|..++...+.-. ...... ...++.++..+. +++.+|.+++.++.++.+..... .
T Consensus 662 Ll-~s~D~~~r~AAagALAnLts~~~~ia---~~ll~~--~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~-~ 734 (778)
T 3opb_A 662 LL-QLSDVESQRAVAAIFANIATTIPLIA---KELLTK--KELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDN-G 734 (778)
T ss_dssp GG-GCSCHHHHHHHHHHHHHHHHHCHHHH---HHHTTC--HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCST-T
T ss_pred HH-cCCCHHHHHHHHHHHHHhcCCChHHH---HHHHHc--cccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccC-C
Confidence 88 88999999999999999965332100 000111 133444444444 36899999999999999743211 2
Q ss_pred CCCCCchhH--HHHHHHHHHhcccccc
Q 006253 494 PSSPLTPFF--QEIVQALLTVTHREDA 518 (653)
Q Consensus 494 ~~~~l~~~l--~~i~~~L~~~l~~~~~ 518 (653)
..+.+..+. ......|.+++...+.
T Consensus 735 ~~~~~~~~~~~~~l~~~l~~~lk~~~~ 761 (778)
T 3opb_A 735 TNEVYPLLQENQKLKDALNMSLKRGDS 761 (778)
T ss_dssp TTSCCHHHHSCHHHHHHHHHHHSSSSS
T ss_pred ChHHHHHHhcChHHHHHHHHHHhCCCc
Confidence 235566665 4667777777766553
No 68
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.08 E-value=4.1e-08 Score=102.11 Aligned_cols=369 Identities=12% Similarity=0.035 Sum_probs=223.8
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCC---CCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchh
Q 006253 94 KSFILKTLSSPAHDARSTASQVVAKVAGIELPHK---QWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQD 170 (653)
Q Consensus 94 ~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~---~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~ 170 (653)
.+.|++.|.++++.++..++.++..++....+.. .-...+|.|++.+.++++.+++.|..+|..|+..-+++ . +.
T Consensus 50 i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~-n-k~ 127 (584)
T 3l6x_A 50 LPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQD-N-KI 127 (584)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHH-H-HH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHH-H-HH
Confidence 3567889999999999999999999986431100 01367899999999999999999999999998631111 1 11
Q ss_pred h--HhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhh------------------cC
Q 006253 171 H--VNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEAT------------------LS 230 (653)
Q Consensus 171 ~--~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~------------------~~ 230 (653)
. -...+|.++..|.+ ..+.+++..|..+|.++... +.+ .. .....-++.|..++ ..
T Consensus 128 ~I~~~GaIp~LV~LL~s-~~~~~~~e~aa~aL~nLS~~-~~~-k~-~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~ 203 (584)
T 3l6x_A 128 AIKNCDGVPALVRLLRK-ARDMDLTEVITGTLWNLSSH-DSI-KM-EIVDHALHALTDEVIIPHSGWEREPNEDCKPRHI 203 (584)
T ss_dssp HHHHTTHHHHHHHHHHH-CCSHHHHHHHHHHHHHHTTS-GGG-HH-HHHHHTHHHHHHHTHHHHHCCC----------CC
T ss_pred HHHHcCCHHHHHHHHcC-CCCHHHHHHHHHHHHHHhCC-chh-hH-HHHhccHHHHHHHHhccccccccccccccccccc
Confidence 1 23467778888873 35788999999998887642 110 00 00112234443322 12
Q ss_pred CcHHHHHHHHHHHHHHHHHhHHhhHHhH--HHHHHHHHHHhh------cCChhHHHHHHHhHHHhhHHHH-hh--hhhcC
Q 006253 231 PEVKIRQAAFECLVAISSTYYEKLAPYI--QDIFNITAKAVR------EDEEPVALQAIEFWSSVCDEEI-DI--LEEYG 299 (653)
Q Consensus 231 ~~~~~~~~~~~~l~~l~~~~~~~~~~~l--~~l~~~~~~~~~------~~~~~~~~~a~~~~~~~~~~~~-~~--~~~~~ 299 (653)
++++++..+..+|..++...++.-.... ..+++.++..++ +.+......|+..+..++.... +. ...+.
T Consensus 204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~ 283 (584)
T 3l6x_A 204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ 283 (584)
T ss_dssp CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 3679999999999999865432111111 123444444333 2455677777777766663211 00 00000
Q ss_pred CC----CCCCCCCchhhHHHhhh-hhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCC---C---ch--h
Q 006253 300 GD----FSGDSDIPCFYFIKHAL-PVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGD---D---IV--P 366 (653)
Q Consensus 300 ~~----~~~~~~~~~~~~~~~~l-~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~---~---~~--~ 366 (653)
.. ..+.. .....-++.+. +..++.++..+.... ...++..|..+|..++..-+. . .+ .
T Consensus 284 ~~~~~~~~~~~-~~~~~Gve~L~~~~~v~~Ll~LL~~s~--------~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~ 354 (584)
T 3l6x_A 284 EAAPNVANNTG-TSPARGYELLFQPEVVRIYISLLKESK--------TPAILEASAGAIQNLCAGRWTYGRYIRSALRQE 354 (584)
T ss_dssp -------------CCCCGGGGGGSHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSH
T ss_pred hhccccccccc-ccCchhHHHHhcccHHHHHHHHHccCC--------CHHHHHHHHHHHHHHHcCCccccHHHHHHHHHc
Confidence 00 00000 00000011111 134566666664321 135777888899888753210 1 11 2
Q ss_pred chHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCC--------chHHHHHHHHHHHHHH
Q 006253 367 LVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDP--------NNHVKDTTAWTLGRMF 438 (653)
Q Consensus 367 ~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~--------~~~vr~~a~~~l~~~~ 438 (653)
..+|.+.+.+.+++..++..++++|+.++.+.. .-..+-...+|.++..| .+. +..++..|+++|++++
T Consensus 355 ~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~--~~~~I~~g~ip~LV~LL-~~~~~~~~~~~s~~v~~~a~~tL~NL~ 431 (584)
T 3l6x_A 355 KALSAIADLLTNEHERVVKAASGALRNLAVDAR--NKELIGKHAIPNLVKNL-PGGQQNSSWNFSEDTVISILNTINEVI 431 (584)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHTS-SSSSCSGGGTCCHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChh--HHHHHHhCCHHHHHHHh-cCCcccccccchHHHHHHHHHHHHHHh
Confidence 447778888888889999999999999998742 22333457889999998 654 3578899999999997
Q ss_pred hhhccCCCCccccCccchHHHHHHHHHhccc---hhhHHHHHHHHHHHHHh
Q 006253 439 EFLHGSTLETPIINQGNCQQIISVLLQSMKD---VPNVAEKACGALYFLAQ 486 (653)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d---~~~v~~~a~~al~~~~~ 486 (653)
..-... ...-.-...+|.|+..+.+ .++++..|++++.++..
T Consensus 432 a~~~~~------~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 432 AENLEA------AKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp TTCHHH------HHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred cCCHHH------HHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 543210 0111122567888887774 47899999999998874
No 69
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.08 E-value=6.1e-09 Score=113.83 Aligned_cols=268 Identities=14% Similarity=0.224 Sum_probs=203.1
Q ss_pred HHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhH--HhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhh
Q 006253 219 YIMRVVCEATLSPEVKIRQAAFECLVAISSTYY--EKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILE 296 (653)
Q Consensus 219 ~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~--~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 296 (653)
.++..+...+.+.... ..++..+..+++..+ ..++||+-.++|.++....|....||..|-....++....
T Consensus 54 ~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~----- 126 (986)
T 2iw3_A 54 HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAV----- 126 (986)
T ss_dssp HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-----
T ss_pred hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhC-----
Confidence 4666666666543222 788888888886654 3568999899999999999988999988887777776531
Q ss_pred hcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCC---CchhchHHHHH
Q 006253 297 EYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGD---DIVPLVMPFVE 373 (653)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~---~~~~~l~~~l~ 373 (653)
. ...+..++|.++..|.. ...|..+.+|..+++.++...++ ..+|.++|.+.
T Consensus 127 -------------~----~~a~~~~~~~~~~~~~~--------~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~ 181 (986)
T 2iw3_A 127 -------------N----PVAIKALLPHLTNAIVE--------TNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLS 181 (986)
T ss_dssp -------------C----GGGHHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred -------------C----HHHHHHHHHHHHHHhcc--------ccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchH
Confidence 0 11224567777777742 13499999999999999988764 34899999999
Q ss_pred hhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCc
Q 006253 374 ENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQ 453 (653)
Q Consensus 374 ~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~ 453 (653)
+.+.|....++.+|..++-.++.-.+..++.+++ |.+++++ .+|.. | -.|+..++...+-. ....
T Consensus 182 ~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~----~~~~~~~-~~p~~-~----~~~~~~l~~~tfv~-----~v~~ 246 (986)
T 2iw3_A 182 ETMWDTKKEVKAAATAAMTKATETVDNKDIERFI----PSLIQCI-ADPTE-V----PETVHLLGATTFVA-----EVTP 246 (986)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGH----HHHHHHH-HCTTH-H----HHHHHHHTTCCCCS-----CCCH
T ss_pred hhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhH----HHHHHHh-cChhh-h----HHHHHHhhcCeeEe-----eecc
Confidence 9999999999999999998888766556677765 6667777 66643 2 23444444322211 1357
Q ss_pred cchHHHHHHHHHhccc-hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHH
Q 006253 454 GNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLN 532 (653)
Q Consensus 454 ~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~ 532 (653)
+.+.-+.|.|.++|.+ ...+..+++..+.++|+.+.+ +....||++.++|.+.+...... ++++|+.+-.++.
T Consensus 247 ~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~----~~~~~~f~~~l~p~~~~~~~~~~--~pe~r~~~~~a~~ 320 (986)
T 2iw3_A 247 ATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVED----PQVIAPFLGKLLPGLKSNFATIA--DPEAREVTLRALK 320 (986)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCC----HHHHHHHHTTTHHHHHHHTTTCC--SHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCC----HHHHhhhhhhhhhHHHHHhhccC--CHHHHHHHHHHHH
Confidence 7899999999999986 677778999999999998765 67889999999999999888776 5889999999998
Q ss_pred HHHHhcc
Q 006253 533 EVVRCST 539 (653)
Q Consensus 533 ~l~~~~~ 539 (653)
.+.+..+
T Consensus 321 ~l~~~~~ 327 (986)
T 2iw3_A 321 TLRRVGN 327 (986)
T ss_dssp HHHHHHT
T ss_pred HHHHhhc
Confidence 8876644
No 70
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.05 E-value=3.6e-09 Score=97.08 Aligned_cols=188 Identities=18% Similarity=0.190 Sum_probs=137.1
Q ss_pred HHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHh
Q 006253 174 KILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEK 253 (653)
Q Consensus 174 ~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 253 (653)
..++.+...+. ++++.+|..|+.+|..+-. ...++.+...+.++++.+|..++..|..+..
T Consensus 19 ~~~~~L~~~L~--~~~~~vR~~A~~~L~~~~~------------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----- 79 (211)
T 3ltm_A 19 EKVEMYIKNLQ--DDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----- 79 (211)
T ss_dssp GGHHHHHHHTT--CSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----
T ss_pred hHHHHHHHHHc--CCCHHHHHHHHHHHHHhCC------------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-----
Confidence 44566677777 7899999999999987321 2355666777788999999999999987642
Q ss_pred hHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhcc
Q 006253 254 LAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQE 333 (653)
Q Consensus 254 ~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ 333 (653)
+..++.+...+++.++.+|..++..+..+... ..++.+...+.
T Consensus 80 -----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~-----------------------------~~~~~L~~~l~--- 122 (211)
T 3ltm_A 80 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIGDE-----------------------------RAVEPLIKALK--- 122 (211)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-----------------------------GGHHHHHHHTT---
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH-----------------------------HHHHHHHHHHh---
Confidence 12445556677889999999999887766531 23455555443
Q ss_pred CCccCCCccccHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHH
Q 006253 334 EDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNF 413 (653)
Q Consensus 334 ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ 413 (653)
+.++.+|..|..+|+.+.. +..++.+...+.++++.+|.+++.+|+.+.. +..++.
T Consensus 123 ------d~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~ 178 (211)
T 3ltm_A 123 ------DEDWFVRIAAAFALGEIGD-------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAA 178 (211)
T ss_dssp ------CSSHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHH
T ss_pred ------CCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHH
Confidence 1236899999999988742 3456667778889999999999999999853 345677
Q ss_pred HHHHhcCCCchHHHHHHHHHHHHHHhhhc
Q 006253 414 MLTALMQDPNNHVKDTTAWTLGRMFEFLH 442 (653)
Q Consensus 414 ll~~l~~d~~~~vr~~a~~~l~~~~~~~~ 442 (653)
+...+ +|+++.||.+|..+|+++.....
T Consensus 179 L~~~l-~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 179 MEKLA-ETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp HHHHH-HHCCHHHHHHHHHHHHC------
T ss_pred HHHHH-hCCCHHHHHHHHHHHHhcCCCCC
Confidence 77888 89999999999999999987654
No 71
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.02 E-value=1.1e-08 Score=92.92 Aligned_cols=187 Identities=17% Similarity=0.166 Sum_probs=139.5
Q ss_pred HhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhH
Q 006253 172 VNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYY 251 (653)
Q Consensus 172 ~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~ 251 (653)
.....+.+++.+. ++++.+|..|+.+|..+-. ...++.+...+.++++.+|..++..|..+..
T Consensus 12 ~~~~~~~~i~~L~--~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--- 74 (201)
T 3ltj_A 12 DPEKVEMYIKNLQ--DDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--- 74 (201)
T ss_dssp CHHHHHHHHHHTT--CSCHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---
T ss_pred CCcchHHHHHHhc--CCCHHHHHHHHHHHHhcCC------------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC---
Confidence 3456677778888 7899999999999986321 2345666677778899999999999887532
Q ss_pred HhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhh
Q 006253 252 EKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLK 331 (653)
Q Consensus 252 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~ 331 (653)
+..++.+...+.+.++.+|..++..+..+... ..++.+...+.
T Consensus 75 -------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-----------------------------~~~~~L~~~l~- 117 (201)
T 3ltj_A 75 -------ERAVEPLIKALKDEDGWVRQSAAVALGQIGDE-----------------------------RAVEPLIKALK- 117 (201)
T ss_dssp -------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-----------------------------GGHHHHHHHTT-
T ss_pred -------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH-----------------------------HHHHHHHHHHc-
Confidence 12445556677889999999999887766531 23445555543
Q ss_pred ccCCccCCCccccHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHH
Q 006253 332 QEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIAL 411 (653)
Q Consensus 332 ~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~ 411 (653)
+.++.+|..|..+|+.+.. +..++.+...+.++++.+|.+++.+|+.+.. +..+
T Consensus 118 --------d~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~ 171 (201)
T 3ltj_A 118 --------DEDWFVRIAAAFALGEIGD-------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVR 171 (201)
T ss_dssp --------CSSHHHHHHHHHHHHHHTC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHH
T ss_pred --------CCCHHHHHHHHHHHHHhCC-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHH
Confidence 1236899999999988742 4566777778889999999999999999842 2456
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHh
Q 006253 412 NFMLTALMQDPNNHVKDTTAWTLGRMFE 439 (653)
Q Consensus 412 ~~ll~~l~~d~~~~vr~~a~~~l~~~~~ 439 (653)
+.+...+ +|+++.||.+|..+|+++..
T Consensus 172 ~~L~~~l-~d~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 172 AAMEKLA-ETGTGFARKVAVNYLETHKS 198 (201)
T ss_dssp HHHHHHH-HHCCHHHHHHHHHHHHHCC-
T ss_pred HHHHHHH-hCCCHHHHHHHHHHHHHHHh
Confidence 7777888 89999999999999998754
No 72
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.97 E-value=3.9e-08 Score=90.14 Aligned_cols=187 Identities=17% Similarity=0.140 Sum_probs=143.4
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHhhCcchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhcc
Q 006253 4 EVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWL 83 (653)
Q Consensus 4 ~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~ 83 (653)
.+..+++.+.++|..+|..|-..|.++.. ++.+..|.+.+.+ .++.+|..|+..|.+.-..
T Consensus 20 ~~~~L~~~L~~~~~~vR~~A~~~L~~~~~---~~~~~~L~~~l~~--~~~~vr~~a~~aL~~~~~~-------------- 80 (211)
T 3ltm_A 20 KVEMYIKNLQDDSYYVRRAAAYALGKIGD---ERAVEPLIKALKD--EDAWVRRAAADALGQIGDE-------------- 80 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC---GGGHHHHHHHTTC--SCHHHHHHHHHHHHHHCCG--------------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCC---ccHHHHHHHHHcC--CCHHHHHHHHHHHHhhCCH--------------
Confidence 35677788888999999999999988754 5777888888875 4899999999998874321
Q ss_pred CCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhc
Q 006253 84 SLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVS 163 (653)
Q Consensus 84 ~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~ 163 (653)
...+.|++.|.++++.+|..++.+++.+.. ++.++.|...+.++++.+|..++.+|+.+..
T Consensus 81 --------~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--- 141 (211)
T 3ltm_A 81 --------RAVEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--- 141 (211)
T ss_dssp --------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---
T ss_pred --------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---
Confidence 123567788899999999999999988742 5678899999999999999999999987622
Q ss_pred ccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHH
Q 006253 164 SDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECL 243 (653)
Q Consensus 164 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l 243 (653)
...++.+...+. |+++.+|..|+.+|..+- . ...++.+...++++++.+|..+.+.|
T Consensus 142 ---------~~~~~~L~~~l~--d~~~~vr~~a~~aL~~~~--------~----~~~~~~L~~~l~d~~~~vr~~A~~aL 198 (211)
T 3ltm_A 142 ---------ERAVEPLIKALK--DEDGWVRQSAADALGEIG--------G----ERVRAAMEKLAETGTGFARKVAVNYL 198 (211)
T ss_dssp ---------GGGHHHHHHHTT--CSSHHHHHHHHHHHHHHC--------S----HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHc--CCCHHHHHHHHHHHHHhC--------c----hhHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 123455666776 788999999999999741 1 45667777777788999999999999
Q ss_pred HHHHHHhH
Q 006253 244 VAISSTYY 251 (653)
Q Consensus 244 ~~l~~~~~ 251 (653)
..+....+
T Consensus 199 ~~~~~~~~ 206 (211)
T 3ltm_A 199 ETHKSFNH 206 (211)
T ss_dssp HC------
T ss_pred HhcCCCCC
Confidence 88766543
No 73
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.95 E-value=1.9e-07 Score=94.83 Aligned_cols=312 Identities=13% Similarity=0.070 Sum_probs=188.6
Q ss_pred hHHHHHHHhhcCC------------ChhHHHHHHHHHHHHHhhhcccccchhhHhHHH----------HHHHhcccCCCC
Q 006253 131 ELIGALLSNIHQL------------PPHTKQATLETLGYICEEVSSDAVEQDHVNKIL----------TAVVQGMNASES 188 (653)
Q Consensus 131 ~l~~~l~~~l~~~------------~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~----------~~l~~~l~~~~~ 188 (653)
..+|.|++.+... ++..+..|..+|..|+..- |+.........++ +.+.+.+.....
T Consensus 70 g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 148 (458)
T 3nmz_A 70 GCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQ-PDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEP 148 (458)
T ss_dssp TCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHS-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred CCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccC-cchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Confidence 4556666666542 3688888888888888765 5433111111111 233344442110
Q ss_pred CHH-----HHH-------HHHHHHHHHHHhhhhhcCChhHHHH-----HHHHHHhhhc-----------CCcHHHHHHHH
Q 006253 189 NND-----VRL-------AATRALYNALGFAQANFSNDMERDY-----IMRVVCEATL-----------SPEVKIRQAAF 240 (653)
Q Consensus 189 ~~~-----vr~-------~a~~~l~~~~~~~~~~~~~~~~~~~-----il~~l~~~~~-----------~~~~~~~~~~~ 240 (653)
+.+ ++. .|+.+|.++... +..++. .++.|..++. ..++.++..+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-------~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa 221 (458)
T 3nmz_A 149 GMDQDKNPMPAPVEHQICPAVCVLMKLSFD-------EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAG 221 (458)
T ss_dssp SSCCCSCC--CCCTTTTHHHHHHHHHHTTS-------HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHH
T ss_pred ccccccCCccchhhHHHHHHHHHHHHhcCC-------HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHH
Confidence 111 444 788888875321 122222 3444444442 13467888999
Q ss_pred HHHHHHHHHhHHhhHHhH---HHHHHHHHHHhhcCChhHHHHHHHhHHHhhHH-HHhhhhhcCCCCCCCCCCchhhHHHh
Q 006253 241 ECLVAISSTYYEKLAPYI---QDIFNITAKAVREDEEPVALQAIEFWSSVCDE-EIDILEEYGGDFSGDSDIPCFYFIKH 316 (653)
Q Consensus 241 ~~l~~l~~~~~~~~~~~l---~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (653)
.+|..++...... ...+ ...+|.+++.+.+.+++++..|...+..++.. .. ..+..+..
T Consensus 222 ~aL~nLa~~~~~~-k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~----------------~~k~~I~~ 284 (458)
T 3nmz_A 222 MALTNLTFGDVAN-KATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADV----------------NSKKTLRE 284 (458)
T ss_dssp HHHHHHHTTCHHH-HHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCH----------------HHHHHHHH
T ss_pred HHHHHHhCCCccc-HHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCH----------------HHHHHHHH
Confidence 9999998754422 2222 45789999999999999999999888888641 00 01111111
Q ss_pred hhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcC---CCc--hhchHHHHHhhhcCcch----hhHHHH
Q 006253 317 ALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVG---DDI--VPLVMPFVEENITKQEW----RQREAA 387 (653)
Q Consensus 317 ~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~---~~~--~~~l~~~l~~~l~~~~~----~~r~aa 387 (653)
...+|.|+..+.... +..++..|..+|..++.... ..+ ..-.++.+.+.+.+++. ..++.+
T Consensus 285 --~GaI~~LV~lLl~s~--------~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A 354 (458)
T 3nmz_A 285 --VGSVKALMECALEVK--------KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESG 354 (458)
T ss_dssp --TTHHHHHHHHHTTCC--------SHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHH
T ss_pred --cCCHHHHHHHHhcCC--------CHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHH
Confidence 134566666543211 13567788888888887331 111 12345555555554332 478888
Q ss_pred HHHHHHhhc---CCCCCcchHHH-HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccch--HHHHH
Q 006253 388 TYAFGSILE---GPSPEKLVPLV-NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNC--QQIIS 461 (653)
Q Consensus 388 l~~l~~i~~---~~~~~~~~~~l-~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~--~~il~ 461 (653)
+++|..++. +. ++...... ...+|.++..| .+.+..++..|+|+|++++....+ ....+ ...+|
T Consensus 355 ~~aL~nLs~~~a~~-~~~~~~i~~~G~i~~Lv~LL-~~~~~~v~~~A~~aL~nLa~~~~~--------~~~~i~~~G~I~ 424 (458)
T 3nmz_A 355 GGILRNVSSLIATN-EDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARNPK--------DQEALWDMGAVS 424 (458)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHHS-SCSCHHHHHHHHHHHHHHHSSCHH--------HHHHHHHHTHHH
T ss_pred HHHHHHHHhcccCC-HHHHHHHHHcccHHHHHHHH-cCCChHHHHHHHHHHHHHHcCCHH--------HHHHHHHCCCHH
Confidence 899888875 32 23222222 24689999999 999999999999999999853221 12222 35688
Q ss_pred HHHHhccc-hhhHHHHHHHHHHHHHhc
Q 006253 462 VLLQSMKD-VPNVAEKACGALYFLAQG 487 (653)
Q Consensus 462 ~l~~~l~d-~~~v~~~a~~al~~~~~~ 487 (653)
.|+..+.+ +++++..|+.+|.+++..
T Consensus 425 ~Lv~LL~s~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 425 MLKNLIHSKHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp HHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 89998875 789999999999999975
No 74
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.95 E-value=5.9e-08 Score=88.13 Aligned_cols=182 Identities=16% Similarity=0.150 Sum_probs=143.4
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHhhCcchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhcc
Q 006253 4 EVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWL 83 (653)
Q Consensus 4 ~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~ 83 (653)
....+++.+.++|+.+|..|-..|.++.. ++.+..|.+.+.+ .++.+|..|+..|.+.-..
T Consensus 15 ~~~~~i~~L~~~~~~vr~~A~~~L~~~~~---~~~~~~L~~~l~~--~~~~vr~~a~~~L~~~~~~-------------- 75 (201)
T 3ltj_A 15 KVEMYIKNLQDDSYYVRRAAAYALGKIGD---ERAVEPLIKALKD--EDAWVRRAAADALGQIGDE-------------- 75 (201)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHCC---GGGHHHHHHHTTC--SSHHHHHHHHHHHHHHCCG--------------
T ss_pred chHHHHHHhcCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHcC--CCHHHHHHHHHHHHhhCCH--------------
Confidence 34678888999999999999999998754 4677788888874 4789999999988774321
Q ss_pred CCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhc
Q 006253 84 SLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVS 163 (653)
Q Consensus 84 ~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~ 163 (653)
...+.|.+.|.++++.+|..++.+++.+.. ++.++.|...+.++++.+|..++.+|+.+..
T Consensus 76 --------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--- 136 (201)
T 3ltj_A 76 --------RAVEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--- 136 (201)
T ss_dssp --------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC---
T ss_pred --------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---
Confidence 123567788899999999999999988742 4678889999999999999999999987532
Q ss_pred ccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHH
Q 006253 164 SDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECL 243 (653)
Q Consensus 164 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l 243 (653)
...++.+...+. |+++.+|..|+.+|..+- . ...++.+...++++++.+|..+.+.|
T Consensus 137 ---------~~~~~~L~~~l~--d~~~~vr~~A~~aL~~~~--------~----~~~~~~L~~~l~d~~~~vr~~A~~aL 193 (201)
T 3ltj_A 137 ---------ERAVEPLIKALK--DEDGWVRQSAADALGEIG--------G----ERVRAAMEKLAETGTGFARKVAVNYL 193 (201)
T ss_dssp ---------GGGHHHHHHHTT--CSSHHHHHHHHHHHHHHC--------S----HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHc--CCCHHHHHHHHHHHHHhC--------c----hhHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 123455667777 788999999999999841 1 34666777777788999999999988
Q ss_pred HHH
Q 006253 244 VAI 246 (653)
Q Consensus 244 ~~l 246 (653)
..+
T Consensus 194 ~~l 196 (201)
T 3ltj_A 194 ETH 196 (201)
T ss_dssp HHC
T ss_pred HHH
Confidence 764
No 75
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.88 E-value=1.3e-08 Score=93.31 Aligned_cols=194 Identities=16% Similarity=0.109 Sum_probs=142.6
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCC---CCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccc
Q 006253 92 QIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHK---QWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVE 168 (653)
Q Consensus 92 ~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~---~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~ 168 (653)
.....|...+.++++.+|..++.+++.++....... .-...++.|.+.+.++++.++..++.+|+.++... ++...
T Consensus 12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~ 90 (210)
T 4db6_A 12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQIQ 90 (210)
T ss_dssp -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-HHHHH
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cHHHH
Confidence 345578888999999999999999999986431100 01367899999999999999999999999988643 22110
Q ss_pred hhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q 006253 169 QDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISS 248 (653)
Q Consensus 169 ~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~ 248 (653)
.-.-...++.++..+. ++++.+|..|+.+|.++....++... .......++.+..++.+++++++..++.+|..++.
T Consensus 91 ~i~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~-~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 91 AVIDAGALPALVQLLS--SPNEQILQEALWALSNIASGGNEQIQ-AVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 167 (210)
T ss_dssp HHHHTTCHHHHHHHTT--CSCHHHHHHHHHHHHHHTTSCHHHHH-HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHc--CCcHHHHHHHHHHHHHHHcCCHHHHH-HHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 1112346788888888 67899999999999997643221110 00113468888888888899999999999999998
Q ss_pred HhHHhhHHhHH-HHHHHHHHHhhcCChhHHHHHHHhHHHhhH
Q 006253 249 TYYEKLAPYIQ-DIFNITAKAVREDEEPVALQAIEFWSSVCD 289 (653)
Q Consensus 249 ~~~~~~~~~l~-~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 289 (653)
..++....... ..++.+.+.+.+.+++++..|..++..+++
T Consensus 168 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 168 GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 64443333333 578888889999999999999998887763
No 76
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.87 E-value=6.1e-07 Score=74.91 Aligned_cols=215 Identities=12% Similarity=0.183 Sum_probs=154.4
Q ss_pred HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhh
Q 006253 218 DYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEE 297 (653)
Q Consensus 218 ~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 297 (653)
..++..+..++.++-|.++++++..+..++..+++...|.+.+++-.+-+ +..-..-...-..+++++...+
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~k---sEaIpltqeIa~a~G~la~i~P----- 102 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKK---SEAIPLTQEIAKAFGQMAKEKP----- 102 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH---CCSHHHHHHHHHHHHHHHHHCH-----
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhh---cccCchHHHHHHHHhHHHHhCH-----
Confidence 56888889999999999999999999999999999888888877654321 2222222233344555654322
Q ss_pred cCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhc
Q 006253 298 YGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENIT 377 (653)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~ 377 (653)
..+..++|.++...+-. | ...|..-..+|+.++...| ..++.++.-+..+++
T Consensus 103 ------------------e~v~~vVp~lfanyrig--d-------~kikIn~~yaLeeIaranP-~l~~~v~rdi~smlt 154 (253)
T 2db0_A 103 ------------------ELVKSMIPVLFANYRIG--D-------EKTKINVSYALEEIAKANP-MLMASIVRDFMSMLS 154 (253)
T ss_dssp ------------------HHHHHHHHHHHHHSCCC--S-------HHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHTS
T ss_pred ------------------HHHHhhHHHHHHHHhcC--C-------ccceecHHHHHHHHHHhCh-HHHHHHHHHHHHHhc
Confidence 22335678888765532 1 2567777888888887755 445566666777888
Q ss_pred CcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchH
Q 006253 378 KQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQ 457 (653)
Q Consensus 378 ~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 457 (653)
|++-..|-+++..++.+++.. ...+.|| +|.+...| .|.+..||..|..+|+.+++.-+ -+.
T Consensus 155 skd~~Dkl~aLnFi~alGen~-~~yv~Pf----LprL~aLL-~D~deiVRaSaVEtL~~lA~~np------------klR 216 (253)
T 2db0_A 155 SKNREDKLTALNFIEAMGENS-FKYVNPF----LPRIINLL-HDGDEIVRASAVEALVHLATLND------------KLR 216 (253)
T ss_dssp CSSHHHHHHHHHHHHTCCTTT-HHHHGGG----HHHHHGGG-GCSSHHHHHHHHHHHHHHHTSCH------------HHH
T ss_pred CCChHHHHHHHHHHHHHhccC-ccccCcc----hHHHHHHH-cCcchhhhHHHHHHHHHHHHcCH------------HHH
Confidence 999899999999999998864 3444454 57777788 99999999999999999987532 366
Q ss_pred HHHHHHHHhccc-hhhHHHHHHHHHHHHHh
Q 006253 458 QIISVLLQSMKD-VPNVAEKACGALYFLAQ 486 (653)
Q Consensus 458 ~il~~l~~~l~d-~~~v~~~a~~al~~~~~ 486 (653)
+++-.-++.+.| +.-|+.....++..+.-
T Consensus 217 kii~~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 217 KVVIKRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp HHHHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 777777777877 56666666667776653
No 77
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.81 E-value=1.6e-05 Score=84.25 Aligned_cols=473 Identities=8% Similarity=0.073 Sum_probs=255.2
Q ss_pred HHHHHHHhcC-CCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhh--cCCChhHHHHHHHHHHHHHhhhcccccch
Q 006253 93 IKSFILKTLS-SPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNI--HQLPPHTKQATLETLGYICEEVSSDAVEQ 169 (653)
Q Consensus 93 i~~~ll~~l~-~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l--~~~~~~~~~~~l~~l~~l~~~~~~~~~~~ 169 (653)
+...|-..+. .++..+.-.+...+.-+.++. ..|++ +.+++..+ ....+++|-.++-++..+.+.+ ++.+ .
T Consensus 133 ll~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~---~~~~~-~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~-~~~~-~ 206 (778)
T 3opb_A 133 LLNELQIRIHYGEDTHVTYLLSIILQLLNKFK---YNFKE-VRFLVKELILRISEDEVKSMMLIIFAELQSSF-QKDF-D 206 (778)
T ss_dssp HHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSC---CCSTT-TTHHHHHHHTTTTCHHHHHHHHHHHHHHHHHH-HHHH-H
T ss_pred HHHHHHHHhhcCCCcchhHHHHHHHHHHHHcC---ccccc-hhhHHHHhccccChhhhHHHHHHHHHHHHHhC-chHH-H
Confidence 3334433333 334455555555544444433 36887 67776665 3567889999999999888877 4444 4
Q ss_pred hhHhHHHHHHH-hcccCCCCCHHHHHHHHHHHHHHHHhhh----hhcCChhHHHHHHHHHHhhh-cCCcHHHHHHHHHHH
Q 006253 170 DHVNKILTAVV-QGMNASESNNDVRLAATRALYNALGFAQ----ANFSNDMERDYIMRVVCEAT-LSPEVKIRQAAFECL 243 (653)
Q Consensus 170 ~~~~~l~~~l~-~~l~~~~~~~~vr~~a~~~l~~~~~~~~----~~~~~~~~~~~il~~l~~~~-~~~~~~~~~~~~~~l 243 (653)
..+...+..++ ..=...+.++ ...++.++..+....+ ..|..+. +.+.+.+.+ ...+..+..++++.|
T Consensus 207 ~~~~~~~~~l~~e~~~~~~~~~--~~~~~~~l~~lfPi~p~~~s~lfl~e~----~~~~l~~~~~~~~~~~~~~a~L~lL 280 (778)
T 3opb_A 207 KAVVDFMSSLIVEAEIDVGNDP--LSIIVKTLSELYPSLTTLCSEIFLTKG----LSKLFKKRVFEEQDLQFTKELLRLL 280 (778)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCH--HHHHHHHHHHHTTTTHHHHHHHHSTTT----HHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCCCcc--HHHHHHHHHHHhcCCHHHHHHHHcccc----HHHHHHHHHhcccchHHHHHHHHHH
Confidence 44555555322 1111001222 2235555555544333 3333333 344444444 345667777888888
Q ss_pred HHHHHHhHHhhHHhH-HHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhH
Q 006253 244 VAISSTYYEKLAPYI-QDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLV 322 (653)
Q Consensus 244 ~~l~~~~~~~~~~~l-~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 322 (653)
...+.... .+.++ +..++++.+.++. +.+|..|.-.+..+..... .. ...+.++.
T Consensus 281 saACi~~~--cR~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~--------~~------------~~si~~La 336 (778)
T 3opb_A 281 SSACIDET--MRTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSFTK--------LT------------CINLKQLS 336 (778)
T ss_dssp HHHCCSHH--HHHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGT--------CT------------TCCHHHHH
T ss_pred HHHhCCcH--HHHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCC--------CC------------cCcHHHHH
Confidence 77655432 24443 4566777777654 5677777766555543210 00 01123455
Q ss_pred HHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcC--CCc--hhchHHHHHhhhcC-cchhhHHHHHHHHHHhhcC
Q 006253 323 PLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVG--DDI--VPLVMPFVEENITK-QEWRQREAATYAFGSILEG 397 (653)
Q Consensus 323 ~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~--~~~--~~~l~~~l~~~l~~-~~~~~r~aal~~l~~i~~~ 397 (653)
+.+.+++...+. ..|..|.+.|..++.... +.+ -+..++.+.+.+.+ .+...-++++..++.++..
T Consensus 337 ~~~~~~L~~~~~---------~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~ 407 (778)
T 3opb_A 337 EIFINAISRRIV---------PKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTL 407 (778)
T ss_dssp HHHHHHTTTCCH---------HHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhcCCc---------cHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC
Confidence 666666653211 115556666665543210 000 01223333333332 3445566777777776653
Q ss_pred CCCC-------------------------c-------chH----HH--HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh
Q 006253 398 PSPE-------------------------K-------LVP----LV--NIALNFMLTALMQDPNNHVKDTTAWTLGRMFE 439 (653)
Q Consensus 398 ~~~~-------------------------~-------~~~----~l--~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~ 439 (653)
.... . +.. .+ ..++|.+...+ +++++.+|..|+++|++++.
T Consensus 408 ~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll-~S~s~~~re~A~~aL~nLS~ 486 (778)
T 3opb_A 408 PEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREM-HNLSPNCKQQVVRIIYNITR 486 (778)
T ss_dssp CCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHG-GGSCHHHHHHHHHHHHHHHT
T ss_pred CcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHH-cCCCHHHHHHHHHHHHHHcC
Confidence 2100 0 000 00 13678888888 88999999999999999986
Q ss_pred hhccCCCCccccCccchHHHHHHHHHhccc-hh---hHHHHHHHHHHHHHhcccCCC-CCCCCCchhHHHHHHHHHHhcc
Q 006253 440 FLHGSTLETPIINQGNCQQIISVLLQSMKD-VP---NVAEKACGALYFLAQGFEDAI-SPSSPLTPFFQEIVQALLTVTH 514 (653)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~---~v~~~a~~al~~~~~~~~~~~-~~~~~l~~~l~~i~~~L~~~l~ 514 (653)
.-.. ...-.-...++.|+..+.+ .. +++..|+.||.++.-...+.. +++. .++ ..++.|+.++.
T Consensus 487 d~~~-------R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~--~~~--~aI~pLv~LL~ 555 (778)
T 3opb_A 487 SKNF-------IPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKY--SAL--NAIPFLFELLP 555 (778)
T ss_dssp SGGG-------HHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSS--CST--THHHHHHHTSC
T ss_pred CHHH-------HHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCC--ccc--cchHHHHHHcC
Confidence 5321 1111223567788888775 22 378999999999985432210 0011 111 67888888887
Q ss_pred c-cccch---------h-chHHHHHHHHHHHHHhccc---cc-HHHHH--HHHHHHHHHHHHHHHhhcCChhHHHhHHHH
Q 006253 515 R-EDAGE---------S-RLRTAAYETLNEVVRCSTD---ET-APMVM--QLVPLIMMELHQTLEAQKLSSDEREKQNEI 577 (653)
Q Consensus 515 ~-~~~~~---------~-~~~~~~~~~l~~l~~~~~~---~~-~~~~~--~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l 577 (653)
. +.... . .-+..++.+|..++..-++ +. ...+. ..+|.+.+.+. ++.+ .+
T Consensus 556 ~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~--------s~n~-----~V 622 (778)
T 3opb_A 556 RSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLML--------DENV-----PL 622 (778)
T ss_dssp CSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGG--------CSSH-----HH
T ss_pred CCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHh--------CCCH-----HH
Confidence 2 21100 0 1155789999999886532 22 11222 23344433322 1212 46
Q ss_pred HHHHHhHHHHHHHHhCCCcchhhHhh----HhHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHH
Q 006253 578 QGLLCGCLQVIIQKLGSSEQTKYVFM----QYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYA 638 (653)
Q Consensus 578 ~~~~~~~i~~i~~~~~~~~~~~~~~~----~~~~~i~~~l~~~l~~~~~~~~e~~~~~~~~l~~~ 638 (653)
|..+++++..++..-..-. + .|. |-..+-++.++..+..++.++|..|..+++.+...
T Consensus 623 rrAA~elI~NL~~~~e~i~--~-k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~ 684 (778)
T 3opb_A 623 QRSTLELISNMMSHPLTIA--A-KFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATT 684 (778)
T ss_dssp HHHHHHHHHHHHTSGGGTG--G-GTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHH--H-HHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCC
Confidence 7789999999996332100 0 021 12222478888899888888999999988888543
No 78
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.81 E-value=1.6e-06 Score=72.47 Aligned_cols=215 Identities=12% Similarity=0.109 Sum_probs=149.1
Q ss_pred chHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhh
Q 006253 130 PELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQA 209 (653)
Q Consensus 130 ~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~ 209 (653)
.+++..++..++++-|.++..|+.++..+.+.. |+.. .+...+++.++- . +..........++++.+...-++
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~-~el~-epl~~kL~vm~~----k-sEaIpltqeIa~a~G~la~i~Pe 103 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTR-EDLY-EPMLKKLFSLLK----K-SEAIPLTQEIAKAFGQMAKEKPE 103 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-GGGH-HHHHHHHHHHHH----H-CCSHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHh-HHHH-HHHHHHHHHHHh----h-cccCchHHHHHHHHhHHHHhCHH
Confidence 588999999999999999999999999999988 7766 454555554433 2 34455555667788876653222
Q ss_pred hcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhH
Q 006253 210 NFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCD 289 (653)
Q Consensus 210 ~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 289 (653)
....+.|.++.-..-.++..+.+.-..|..++..+|+.+.. ++.-+...+.+.+..-+..++.|+..+++
T Consensus 104 ------~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~----v~rdi~smltskd~~Dkl~aLnFi~alGe 173 (253)
T 2db0_A 104 ------LVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMAS----IVRDFMSMLSSKNREDKLTALNFIEAMGE 173 (253)
T ss_dssp ------HHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHH----HHHHHHHHTSCSSHHHHHHHHHHHHTCCT
T ss_pred ------HHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHH----HHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence 23567788877665679999999999999999999876554 45555566778888889999999999987
Q ss_pred HHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCCchhchH
Q 006253 290 EEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVM 369 (653)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~ 369 (653)
. .+.|+.|++++++..| - | ++--+|..|.++|..++...+. +=+.+.
T Consensus 174 n-------------------~~~yv~PfLprL~aLL----~--D-------~deiVRaSaVEtL~~lA~~npk-lRkii~ 220 (253)
T 2db0_A 174 N-------------------SFKYVNPFLPRIINLL----H--D-------GDEIVRASAVEALVHLATLNDK-LRKVVI 220 (253)
T ss_dssp T-------------------THHHHGGGHHHHHGGG----G--C-------SSHHHHHHHHHHHHHHHTSCHH-HHHHHH
T ss_pred c-------------------CccccCcchHHHHHHH----c--C-------cchhhhHHHHHHHHHHHHcCHH-HHHHHH
Confidence 4 3467777666555443 1 1 1125899999999999876543 223333
Q ss_pred HHHHhhhcCcchhhHHHHHHHHHHhh
Q 006253 370 PFVEENITKQEWRQREAATYAFGSIL 395 (653)
Q Consensus 370 ~~l~~~l~~~~~~~r~aal~~l~~i~ 395 (653)
.. .+-+.|.+.-+.+..--+++.+.
T Consensus 221 ~k-l~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 221 KR-LEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp HH-HHHCCCSCHHHHHHHHHHHHHHH
T ss_pred HH-HHHhcCcHHHHHHHHHHHHHHHH
Confidence 33 34456666555555555555543
No 79
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.80 E-value=8.2e-08 Score=87.88 Aligned_cols=193 Identities=15% Similarity=0.123 Sum_probs=137.8
Q ss_pred HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhHH-HHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhh
Q 006253 218 DYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQ-DIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILE 296 (653)
Q Consensus 218 ~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 296 (653)
+...+.+..++.+++++++..++.+|..++...++.....+. ..++.+++.+.+.+++++..|+..+..++....+.
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-- 88 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ-- 88 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH--
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH--
Confidence 345677788888899999999999999998655544333333 68889999999999999999999999887421100
Q ss_pred hcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCC---c-hhchHHHH
Q 006253 297 EYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDD---I-VPLVMPFV 372 (653)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~---~-~~~l~~~l 372 (653)
...+.. ...+|.++..+.. .+..+|..|..+|..++...++. + -.-.++.+
T Consensus 89 -------------~~~i~~---~g~i~~L~~lL~~---------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 143 (210)
T 4db6_A 89 -------------IQAVID---AGALPALVQLLSS---------PNEQILQEALWALSNIASGGNEQIQAVIDAGALPAL 143 (210)
T ss_dssp -------------HHHHHH---TTCHHHHHHHTTC---------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHH
T ss_pred -------------HHHHHH---CCCHHHHHHHHcC---------CcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHH
Confidence 001111 2456777777652 12478888999999887533211 1 12356667
Q ss_pred HhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHH-HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh
Q 006253 373 EENITKQEWRQREAATYAFGSILEGPSPEKLVPLV-NIALNFMLTALMQDPNNHVKDTTAWTLGRMFE 439 (653)
Q Consensus 373 ~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l-~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~ 439 (653)
.+.+.+++..+|..++++|+.++.+. +....... ...++.+...+ .++++.+|..|+++|++++.
T Consensus 144 ~~ll~~~~~~v~~~a~~aL~~l~~~~-~~~~~~~~~~g~i~~L~~ll-~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 144 VQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQ-SHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHcCC-cHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHhc
Confidence 77788888999999999999999763 22222222 24688899999 99999999999999999874
No 80
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.73 E-value=2.7e-07 Score=88.18 Aligned_cols=235 Identities=9% Similarity=0.057 Sum_probs=154.1
Q ss_pred cchHHHHHHHHHhcC----------CCChhHHHHHHHHHhhhcchhhhhhHHHhhhhccCCChHHHHHHHHHHHH-hcCC
Q 006253 35 LPGFLLSLAGELVND----------EKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILK-TLSS 103 (653)
Q Consensus 35 ~~~~~~~l~~il~~~----------~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~-~l~~ 103 (653)
+++.+...+.++.++ +.+.+.|..|+-.|.+++...... ..+. +....+.+++ .|.+
T Consensus 26 ~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna------~~~~------~~G~l~~Lv~~lL~s 93 (296)
T 1xqr_A 26 EVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNA------ADFC------QLSGMHLLVGRYLEA 93 (296)
T ss_dssp HHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHH------HHHH------HTTHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhH------HHHH------HcCCHHHHHHHHHcC
Confidence 356677788888874 223467888888888877643210 1111 1123457888 9999
Q ss_pred CChHHHHHHHHHHHHHHhhhcCCCCC----chHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhhcccccchhh-HhHHHH
Q 006253 104 PAHDARSTASQVVAKVAGIELPHKQW----PELIGALLSNIHQ-LPPHTKQATLETLGYICEEVSSDAVEQDH-VNKILT 177 (653)
Q Consensus 104 ~~~~vr~~~~~~l~~ia~~~~~~~~~----~~l~~~l~~~l~~-~~~~~~~~~l~~l~~l~~~~~~~~~~~~~-~~~l~~ 177 (653)
+++.+|..++.+++.++... |..++ .+.++.|++.+.+ +++.+|..++.+|+.++... +... +.. -...+|
T Consensus 94 ~~~~vr~~Aa~~Lg~ia~~n-~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~-~~~~-~~~~~~ggi~ 170 (296)
T 1xqr_A 94 GAAGLRWRAAQLIGTCSQNV-AAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQ-EAGL-LQFLRLDGFS 170 (296)
T ss_dssp SSHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTC-HHHH-HHHHHTTHHH
T ss_pred CCHHHHHHHHHHHHHHHhCC-HHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCC-cHHH-HHHHHCCCHH
Confidence 99999999999999999643 21111 3678888999885 47899999999999999865 2211 111 135788
Q ss_pred HHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhH--
Q 006253 178 AVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLA-- 255 (653)
Q Consensus 178 ~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-- 255 (653)
.+...+. +++..++..|+.+|..+....++... ......+++.|..++..++.+++..++.+|..++...+....
T Consensus 171 ~L~~lL~--~~d~~v~~~A~~aLs~L~~~~~~~~~-~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~ 247 (296)
T 1xqr_A 171 VLMRAMQ--QQVQKLKVKSAFLLQNLLVGHPEHKG-TLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVREC 247 (296)
T ss_dssp HHHHHHH--SSCHHHHHHHHHHHHHHHHHCGGGHH-HHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHc--CCCHHHHHHHHHHHHHHHhCChHHHH-HHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHH
Confidence 8888888 67899999999999998764221100 001134778888888888999999999999999887443221
Q ss_pred ----HhHHHHHHHHHHHhhcC--ChhHHHHHHHhHHHh
Q 006253 256 ----PYIQDIFNITAKAVRED--EEPVALQAIEFWSSV 287 (653)
Q Consensus 256 ----~~l~~l~~~~~~~~~~~--~~~~~~~a~~~~~~~ 287 (653)
..+..++.-....++.. ..++...+.++|.++
T Consensus 248 ~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~ 285 (296)
T 1xqr_A 248 REPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTC 285 (296)
T ss_dssp HCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence 12334444444444422 234444455544443
No 81
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.72 E-value=2e-06 Score=87.33 Aligned_cols=318 Identities=12% Similarity=0.056 Sum_probs=195.4
Q ss_pred HHHHHHHHhcCCC------------ChHHHHHHHHHHHHHHhhhcCCCCC--------------chHHHHHHHhhcCCC-
Q 006253 92 QIKSFILKTLSSP------------AHDARSTASQVVAKVAGIELPHKQW--------------PELIGALLSNIHQLP- 144 (653)
Q Consensus 92 ~i~~~ll~~l~~~------------~~~vr~~~~~~l~~ia~~~~~~~~~--------------~~l~~~l~~~l~~~~- 144 (653)
...+.|+++|... ++.+|..++.++..|+... |...- ....+.+++++.+..
T Consensus 70 g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 148 (458)
T 3nmz_A 70 GCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQ-PDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEP 148 (458)
T ss_dssp TCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHS-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred CCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccC-cchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Confidence 4455777777753 2699999999999999876 42110 112244444444331
Q ss_pred -hh-----HHH-------HHHHHHHHHHhhhcccccchhhH--hHHHHHHHhccc---------CCCCCHHHHHHHHHHH
Q 006253 145 -PH-----TKQ-------ATLETLGYICEEVSSDAVEQDHV--NKILTAVVQGMN---------ASESNNDVRLAATRAL 200 (653)
Q Consensus 145 -~~-----~~~-------~~l~~l~~l~~~~~~~~~~~~~~--~~l~~~l~~~l~---------~~~~~~~vr~~a~~~l 200 (653)
.+ +++ .|..+|..+...- + . +..+ ...++.+...+. .+..++.++..|..+|
T Consensus 149 ~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~--e-~-R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL 224 (458)
T 3nmz_A 149 GMDQDKNPMPAPVEHQICPAVCVLMKLSFDE--E-H-RHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMAL 224 (458)
T ss_dssp SSCCCSCC--CCCTTTTHHHHHHHHHHTTSH--H-H-HHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred ccccccCCccchhhHHHHHHHHHHHHhcCCH--H-H-HHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHH
Confidence 11 333 6788888775432 1 1 1111 123444444432 1123567899999999
Q ss_pred HHHHHhhhhhcCChhH--HHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH-hHHhhHHhH-H-HHHHHHHHHh-hcCCh
Q 006253 201 YNALGFAQANFSNDME--RDYIMRVVCEATLSPEVKIRQAAFECLVAISST-YYEKLAPYI-Q-DIFNITAKAV-REDEE 274 (653)
Q Consensus 201 ~~~~~~~~~~~~~~~~--~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~l-~-~l~~~~~~~~-~~~~~ 274 (653)
.++...-+..- ... ....++.|..++..++++++..++.+|..++.. ..+ .+..+ + ..+|.+++.+ ...++
T Consensus 225 ~nLa~~~~~~k--~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~-~k~~I~~~GaI~~LV~lLl~s~~~ 301 (458)
T 3nmz_A 225 TNLTFGDVANK--ATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVN-SKKTLREVGSVKALMECALEVKKE 301 (458)
T ss_dssp HHHHTTCHHHH--HHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHH-HHHHHHHTTHHHHHHHHHTTCCSH
T ss_pred HHHhCCCcccH--HHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHH-HHHHHHHcCCHHHHHHHHhcCCCH
Confidence 99764211110 001 134688888888889999999999999988753 122 12222 2 4677777764 45678
Q ss_pred hHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHH
Q 006253 275 PVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLG 354 (653)
Q Consensus 275 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~ 354 (653)
+++..++..+..++....+. ...+.. -...+|.|...+....+ .....++..|..+|.
T Consensus 302 ~v~~~A~~aL~nLs~~~~~n---------------k~~I~~--~~Gal~~Lv~LL~~~~~-----~~~~~v~~~A~~aL~ 359 (458)
T 3nmz_A 302 STLKSVLSALWNLSAHCTEN---------------KADICA--VDGALAFLVGTLTYRSQ-----TNTLAIIESGGGILR 359 (458)
T ss_dssp HHHHHHHHHHHHHHHHCHHH---------------HHHHHH--STTHHHHHHHHTTCCCS-----SSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCHHH---------------HHHHHH--hcCcHHHHHHHhcCCCC-----cchHHHHHHHHHHHH
Confidence 88888888888777521000 001110 13467777777763221 111257778888998
Q ss_pred HHHhhc--CC----Cch-hchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHH-HHHHHHHHHhcCCCchHH
Q 006253 355 LVARTV--GD----DIV-PLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVN-IALNFMLTALMQDPNNHV 426 (653)
Q Consensus 355 ~l~~~~--~~----~~~-~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~-~l~~~ll~~l~~d~~~~v 426 (653)
.++... .+ .+. .-.++.+.+.+.+++...++.|+++|+.++.+. ++....... ..+|.+...+ .+.++.+
T Consensus 360 nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~i~~~G~I~~Lv~LL-~s~~~~v 437 (458)
T 3nmz_A 360 NVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARN-PKDQEALWDMGAVSMLKNLI-HSKHKMI 437 (458)
T ss_dssp HHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSC-HHHHHHHHHHTHHHHHHTTT-TCSSHHH
T ss_pred HHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHH-hCCCHHH
Confidence 888631 11 111 124566667788888899999999999999653 233333332 4689999999 9999999
Q ss_pred HHHHHHHHHHHHhhh
Q 006253 427 KDTTAWTLGRMFEFL 441 (653)
Q Consensus 427 r~~a~~~l~~~~~~~ 441 (653)
|..|+++|.+++..-
T Consensus 438 ~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 438 AMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999999999864
No 82
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.64 E-value=5.9e-07 Score=85.95 Aligned_cols=202 Identities=15% Similarity=0.259 Sum_probs=142.5
Q ss_pred ccccHhhhHHHHHHHHHhhcC-----CC---chhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCC-----cchHHH
Q 006253 341 GAWNIAMAGGTCLGLVARTVG-----DD---IVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPE-----KLVPLV 407 (653)
Q Consensus 341 ~~~~~r~~a~~~L~~l~~~~~-----~~---~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~-----~~~~~l 407 (653)
..|..|..|.+.|..+....+ +. .+..+.+.+...+.|.|..+...++.++..++...+.. ....+.
T Consensus 21 k~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~ 100 (278)
T 4ffb_C 21 KLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLI 100 (278)
T ss_dssp SSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHH
Confidence 459999999888877665432 11 13345667778889999999999999999988765322 123456
Q ss_pred HHHHHHHHH-HhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc-hhhHHHHHHHHHHHHH
Q 006253 408 NIALNFMLT-ALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLA 485 (653)
Q Consensus 408 ~~l~~~ll~-~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~ 485 (653)
..++|.++. ++ .|..+.+|..+..++-.+++... ....+++.+...+.. +|+++..++..|..++
T Consensus 101 ~~~l~~lveK~l-~~~k~~~~~~a~~~l~~~~~~~~------------~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l 167 (278)
T 4ffb_C 101 STWTPLLVEKGL-TSSRATTKTQSMSCILSLCGLDT------------SITQSVELVIPFFEKKLPKLIAAAANCVYELM 167 (278)
T ss_dssp HHHHHHHHHHTS-SCCCHHHHHHHHHHHHHHHHTSS------------SSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-cCccHHHHHHHHHHHHHHHHhcC------------cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 677887775 48 89999999999999888876442 234566777777776 8999999999999999
Q ss_pred hcccCCCCCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhcccccH----HHHHHHHHHHHHHHHHHH
Q 006253 486 QGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETA----PMVMQLVPLIMMELHQTL 561 (653)
Q Consensus 486 ~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~----~~~~~l~~~l~~~l~~~~ 561 (653)
..++.. .....+.++.+++.+.+.+++.+ ..+|..+..+++.+....|.... +++..+=|..++.++..+
T Consensus 168 ~~fg~~---~~~~k~~l~~i~~~l~k~l~d~~---~~VR~aA~~l~~~ly~~~G~~~~~~~~~~l~~lkp~~~k~le~~f 241 (278)
T 4ffb_C 168 AAFGLT---NVNVQTFLPELLKHVPQLAGHGD---RNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLHKLF 241 (278)
T ss_dssp HHHTTT---TCCHHHHHHHHGGGHHHHHTCSS---HHHHHHHHHHHHHHHTC-----------CTTSSCHHHHHHHHHHH
T ss_pred HHhCCC---cCCchhHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHHHHHhCcchhhhhhhhhhcCCHHHHHHHHHHH
Confidence 887531 22345678888999999998875 78999999999999999986432 233443344445454443
No 83
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.59 E-value=5.5e-07 Score=86.05 Aligned_cols=149 Identities=17% Similarity=0.121 Sum_probs=109.9
Q ss_pred HHHHh-hhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHH-HHHHHHHHHhcC-CCchHHHHHHHHHHHHHHhhhccCCC
Q 006253 370 PFVEE-NITKQEWRQREAATYAFGSILEGPSPEKLVPLVN-IALNFMLTALMQ-DPNNHVKDTTAWTLGRMFEFLHGSTL 446 (653)
Q Consensus 370 ~~l~~-~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~-~l~~~ll~~l~~-d~~~~vr~~a~~~l~~~~~~~~~~~~ 446 (653)
+.+.. .+.+++..+|..|++++|.++.+. +..-...+. ..+|.++..+ + ++++.+|..|+|+|++++.....
T Consensus 84 ~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n-~~~~~~vv~~g~l~~Ll~LL-~~~~~~~v~~~A~~ALsnl~~~~~~--- 158 (296)
T 1xqr_A 84 HLLVGRYLEAGAAGLRWRAAQLIGTCSQNV-AAIQEQVLGLGALRKLLRLL-DRDACDTVRVKALFAISCLVREQEA--- 158 (296)
T ss_dssp HHHHHTTTTCSSHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHHH-HHCSCHHHHHHHHHHHHHHHTTCHH---
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhCC-HHHHHHHHHCCCHHHHHHHH-ccCCCHHHHHHHHHHHHHHHcCCcH---
Confidence 44445 788899999999999999999763 222122222 5788889888 6 56889999999999999875431
Q ss_pred CccccCccch-HHHHHHHHHhccc-hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhH--HHHHHHHHHhccccccchhc
Q 006253 447 ETPIINQGNC-QQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFF--QEIVQALLTVTHREDAGESR 522 (653)
Q Consensus 447 ~~~~~~~~~~-~~il~~l~~~l~d-~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l--~~i~~~L~~~l~~~~~~~~~ 522 (653)
....+. ...++.|+..+.+ +++++..|+++|..++..-. . ...++ ..+++.|+.++...+ ..
T Consensus 159 ----~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~------~-~~~~vv~~g~i~~Lv~LL~~~d---~~ 224 (296)
T 1xqr_A 159 ----GLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHP------E-HKGTLCSMGMVQQLVALVRTEH---SP 224 (296)
T ss_dssp ----HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG------G-GHHHHHHTTHHHHHHHHHTSCC---ST
T ss_pred ----HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCh------H-HHHHHHHcCCHHHHHHHHcCCC---hh
Confidence 011222 2578888888886 78999999999999997521 1 22222 267888999988764 67
Q ss_pred hHHHHHHHHHHHHHh
Q 006253 523 LRTAAYETLNEVVRC 537 (653)
Q Consensus 523 ~~~~~~~~l~~l~~~ 537 (653)
+++.++.+|+.++..
T Consensus 225 v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 225 FHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhC
Confidence 899999999999876
No 84
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.56 E-value=3.2e-06 Score=77.96 Aligned_cols=180 Identities=16% Similarity=0.194 Sum_probs=132.4
Q ss_pred CCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCc
Q 006253 230 SPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIP 309 (653)
Q Consensus 230 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (653)
+.|+..+.++++.|...++..++.+...+.-++.++.-.+.+.+..+...+++++..+.+...+. +
T Consensus 57 s~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~--~------------ 122 (266)
T 2of3_A 57 HKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDT--E------------ 122 (266)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHT--T------------
T ss_pred CCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhc--c------------
Confidence 45778888889888888877666655666667776655556788899999999988876643210 0
Q ss_pred hhhHHHhhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHH
Q 006253 310 CFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATY 389 (653)
Q Consensus 310 ~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~ 389 (653)
+.+...-...++|.++..+.+. .-.+|..+..++..+...++ ...+++.+.+.+.+.+|+.|..++.
T Consensus 123 -y~~~~~ea~~~lP~LveKlGd~---------k~~vR~~~r~il~~l~~v~~---~~~v~~~l~~g~ksKN~R~R~e~l~ 189 (266)
T 2of3_A 123 -TPMSQEEVSAFVPYLLLKTGEA---------KDNMRTSVRDIVNVLSDVVG---PLKMTPMLLDALKSKNARQRSECLL 189 (266)
T ss_dssp -CCCCHHHHHHHHHHHHHGGGCS---------SHHHHHHHHHHHHHHHHHHC---HHHHHHHHHHGGGCSCHHHHHHHHH
T ss_pred -ccchHHHHHHHHHHHHHHhCCC---------hHHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHccCCHHHHHHHHH
Confidence 1122223346789999887521 12789999999988887654 2346777777889999999999999
Q ss_pred HHHHhhcCCCCCcchHHHHHHH---HHHHHHhcCCCchHHHHHHHHHHHHHHhhhc
Q 006253 390 AFGSILEGPSPEKLVPLVNIAL---NFMLTALMQDPNNHVKDTTAWTLGRMFEFLH 442 (653)
Q Consensus 390 ~l~~i~~~~~~~~~~~~l~~l~---~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~ 442 (653)
.++.+.+..+.. + ...+ |.+.+.+ .|++..||.+|+.++..+-...+
T Consensus 190 ~l~~li~~~G~~---~--~~~l~~~~~ia~ll-~D~d~~VR~aAl~~lve~y~~~G 239 (266)
T 2of3_A 190 VIEYYITNAGIS---P--LKSLSVEKTVAPFV-GDKDVNVRNAAINVLVACFKFEG 239 (266)
T ss_dssp HHHHHHHHHCSG---G--GGGGCHHHHHGGGG-GCSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCC---c--cccccchHHHHHHH-cCCCHHHHHHHHHHHHHHHHHhh
Confidence 999988754322 1 2345 8888899 99999999999999998887765
No 85
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.54 E-value=6.1e-05 Score=81.67 Aligned_cols=317 Identities=17% Similarity=0.120 Sum_probs=184.1
Q ss_pred chHHHHHHHhhc---CCChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCC---C---CHHHHHHHHHHH
Q 006253 130 PELIGALLSNIH---QLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASE---S---NNDVRLAATRAL 200 (653)
Q Consensus 130 ~~l~~~l~~~l~---~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~---~---~~~vr~~a~~~l 200 (653)
.+-+..|...+. ++++.++.+|+..|+.+.... . .+ .+..+...+.+++ . .+.+|..|+-.|
T Consensus 391 ~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~-~----~~----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 391 LEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGF-G----RD----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp TTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTT-T----HH----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCC-c----HH----HHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 356666666665 567888999999998765443 1 12 2333344343101 1 256888887777
Q ss_pred HHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhcCChhHHHHH
Q 006253 201 YNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQA 280 (653)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~a 280 (653)
+... +.. .. ..+.+.|...+.+++...+..+.-.|+.+.-..+ =...+..++..+. .+.++.++..+
T Consensus 462 Gla~--~GS--~~----eev~e~L~~~L~dd~~~~~~~AalALGli~vGTg--n~~ai~~LL~~~~---e~~~e~vrR~a 528 (963)
T 4ady_A 462 GLAA--MGS--AN----IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTG--KPEAIHDMFTYSQ---ETQHGNITRGL 528 (963)
T ss_dssp HHHS--TTC--CC----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHH---HCSCHHHHHHH
T ss_pred HHHh--cCC--CC----HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccC--CHHHHHHHHHHHh---ccCcHHHHHHH
Confidence 7632 111 11 3466666666655665555555555554422111 1233344444333 34566777766
Q ss_pred HHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhc
Q 006253 281 IEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTV 360 (653)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~ 360 (653)
...++-+.-. + +..++.++..|... .++.+|..+.-+++--....
T Consensus 529 algLGll~~g------------------------~---~e~~~~li~~L~~~--------~dp~vRygaa~alglAyaGT 573 (963)
T 4ady_A 529 AVGLALINYG------------------------R---QELADDLITKMLAS--------DESLLRYGGAFTIALAYAGT 573 (963)
T ss_dssp HHHHHHHTTT------------------------C---GGGGHHHHHHHHHC--------SCHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHhhhCC------------------------C---hHHHHHHHHHHHhC--------CCHHHHHHHHHHHHHHhcCC
Confidence 5444433210 0 01233444444421 22678887777666433333
Q ss_pred CCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhh
Q 006253 361 GDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEF 440 (653)
Q Consensus 361 ~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~ 440 (653)
|+. ..+-.++....++.+..+|.+|+.+||-|.-+- ++ .++.++..+.++.++.||..|.+++|.++..
T Consensus 574 Gn~--~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~-~e--------~v~rlv~~L~~~~d~~VR~gAalALGli~aG 642 (963)
T 4ady_A 574 GNN--SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRD-YT--------TVPRIVQLLSKSHNAHVRCGTAFALGIACAG 642 (963)
T ss_dssp CCH--HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSS-CS--------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSS
T ss_pred CCH--HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCC-HH--------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccC
Confidence 331 122223444455677789999999999887653 22 1344444443778999999999999988743
Q ss_pred hccCCCCccccCccchHHHHHHHHHhccc-hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccc
Q 006253 441 LHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAG 519 (653)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~ 519 (653)
-+ ...++..|.....| +..||..|+.+++.+... ......|.+..+...|.+...+...
T Consensus 643 n~-------------~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~g------tnna~~~rva~~l~~L~~~~~dk~~- 702 (963)
T 4ady_A 643 KG-------------LQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQ------QTEKLNPQVADINKNFLSVITNKHQ- 702 (963)
T ss_dssp SC-------------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTT------CCTTTCTTHHHHHHHHHHHHHCSSS-
T ss_pred CC-------------cHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcC------CccccchHHHHHHHHHHHHHhcccc-
Confidence 22 25677777777777 689999999999987643 2455678888888888888865321
Q ss_pred hhchHHHHHHHHHHH
Q 006253 520 ESRLRTAAYETLNEV 534 (653)
Q Consensus 520 ~~~~~~~~~~~l~~l 534 (653)
+...+..+.-+.|.+
T Consensus 703 d~~~~fga~iAqGll 717 (963)
T 4ady_A 703 EGLAKFGACVAQGIM 717 (963)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH
Confidence 234454444455444
No 86
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.48 E-value=0.00012 Score=79.36 Aligned_cols=307 Identities=12% Similarity=0.037 Sum_probs=182.7
Q ss_pred HHHHHhcC---CCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCC--------hhHHHHHHHHHHHHHhhhc
Q 006253 95 SFILKTLS---SPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLP--------PHTKQATLETLGYICEEVS 163 (653)
Q Consensus 95 ~~ll~~l~---~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~--------~~~~~~~l~~l~~l~~~~~ 163 (653)
..|-+.|. ++++.+|..++.++|.+.... ..+.+..|.+.+.+++ +.+|.+|...|+.+.-..
T Consensus 395 ~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~-----~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS- 468 (963)
T 4ady_A 395 KVMAPYLPGSRASSRFIKGGSLYGLGLIYAGF-----GRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGS- 468 (963)
T ss_dssp HHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTT-----THHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTC-
T ss_pred HHHHHhccccCCCcHHHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCC-
Confidence 34444554 456899999999999987533 2356777888776655 678889988988753322
Q ss_pred ccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHH
Q 006253 164 SDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECL 243 (653)
Q Consensus 164 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l 243 (653)
. -..++..+.+.+. +.+..++..|.-+++.+.. .. .+......+++.+. .+.+.++++.+...|
T Consensus 469 ~-------~eev~e~L~~~L~--dd~~~~~~~AalALGli~v-GT---gn~~ai~~LL~~~~---e~~~e~vrR~aalgL 532 (963)
T 4ady_A 469 A-------NIEVYEALKEVLY--NDSATSGEAAALGMGLCML-GT---GKPEAIHDMFTYSQ---ETQHGNITRGLAVGL 532 (963)
T ss_dssp C-------CHHHHHHHHHHHH--TCCHHHHHHHHHHHHHHHT-TC---CCHHHHHHHHHHHH---HCSCHHHHHHHHHHH
T ss_pred C-------CHHHHHHHHHHHh--cCCHHHHHHHHHHHhhhhc-cc---CCHHHHHHHHHHHh---ccCcHHHHHHHHHHH
Confidence 1 1233444445555 5566777777777775421 11 11111123333332 345778888888888
Q ss_pred HHHHHHhHHhhHHhHHHHHHHHHHHhh-cCChhHHHHHHHhHHH-hhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhh
Q 006253 244 VAISSTYYEKLAPYIQDIFNITAKAVR-EDEEPVALQAIEFWSS-VCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVL 321 (653)
Q Consensus 244 ~~l~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 321 (653)
+.+.-..++.+. .++ +.+. +.++-+|..+.-.++. .+.. | ....+
T Consensus 533 Gll~~g~~e~~~----~li----~~L~~~~dp~vRygaa~alglAyaGT-------------G-----n~~aI------- 579 (963)
T 4ady_A 533 ALINYGRQELAD----DLI----TKMLASDESLLRYGGAFTIALAYAGT-------------G-----NNSAV------- 579 (963)
T ss_dssp HHHTTTCGGGGH----HHH----HHHHHCSCHHHHHHHHHHHHHHTTTS-------------C-----CHHHH-------
T ss_pred HhhhCCChHHHH----HHH----HHHHhCCCHHHHHHHHHHHHHHhcCC-------------C-----CHHHH-------
Confidence 876544443332 222 2332 4677777766543321 1110 1 11122
Q ss_pred HHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCC
Q 006253 322 VPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPE 401 (653)
Q Consensus 322 ~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~ 401 (653)
..|+..+.... +..+|.+|..+|+.+...-+ +..+.++. ....+.+|.+|.++.+++|.++.+.. .
T Consensus 580 -q~LL~~~~~d~--------~d~VRraAViaLGlI~~g~~-e~v~rlv~---~L~~~~d~~VR~gAalALGli~aGn~-~ 645 (963)
T 4ady_A 580 -KRLLHVAVSDS--------NDDVRRAAVIALGFVLLRDY-TTVPRIVQ---LLSKSHNAHVRCGTAFALGIACAGKG-L 645 (963)
T ss_dssp -HHHHHHHHHCS--------CHHHHHHHHHHHHHHTSSSC-SSHHHHTT---TGGGCSCHHHHHHHHHHHHHHTSSSC-C
T ss_pred -HHHHHHhccCC--------cHHHHHHHHHHHHhhccCCH-HHHHHHHH---HHHhcCCHHHHHHHHHHHHHhccCCC-c
Confidence 22333222111 12478888888876653322 33333332 23456889999999999999987643 1
Q ss_pred cchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc---hhhHHHHHH
Q 006253 402 KLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD---VPNVAEKAC 478 (653)
Q Consensus 402 ~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d---~~~v~~~a~ 478 (653)
..++..|.... +|++..||.+|+.++|.+.....+ ...+.+..++..|.....+ ++..+-.+.
T Consensus 646 ------~~aid~L~~L~-~D~d~~Vrq~Ai~ALG~Ig~gtnn-------a~~~rva~~l~~L~~~~~dk~~d~~~~fga~ 711 (963)
T 4ady_A 646 ------QSAIDVLDPLT-KDPVDFVRQAAMIALSMILIQQTE-------KLNPQVADINKNFLSVITNKHQEGLAKFGAC 711 (963)
T ss_dssp ------HHHHHHHHHHH-TCSSHHHHHHHHHHHHHHSTTCCT-------TTCTTHHHHHHHHHHHHHCSSSCHHHHHHHH
T ss_pred ------HHHHHHHHHHc-cCCCHHHHHHHHHHHHHHhcCCcc-------ccchHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 34556666667 999999999999999998865542 1345778888888777764 355666666
Q ss_pred HHHHHH
Q 006253 479 GALYFL 484 (653)
Q Consensus 479 ~al~~~ 484 (653)
.|.+-+
T Consensus 712 iAqGll 717 (963)
T 4ady_A 712 VAQGIM 717 (963)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666644
No 87
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.41 E-value=8.1e-06 Score=80.26 Aligned_cols=258 Identities=14% Similarity=0.108 Sum_probs=170.7
Q ss_pred HHHHHHHHHHHHHHhh-------CcchHHHHHHHHHhc---------CCCChhHHHHHHHHHhhhcchhhhhhHHHhhhh
Q 006253 18 TVRKQAEESLKQYQEQ-------NLPGFLLSLAGELVN---------DEKPVESRKLAGLILKNALDAKEQHRKFELVQR 81 (653)
Q Consensus 18 ~~r~~A~~~L~~~~~~-------~~~~~~~~l~~il~~---------~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~ 81 (653)
+..-+|...|..+... --.+.+..|+.++.. +..++.+|..|+..|.+.-..+...+. .
T Consensus 47 ~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~-----~ 121 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKA-----T 121 (354)
T ss_dssp GTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHH-----H
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHH-----H
Confidence 4444555555544322 014677778888742 112467899999999997754321100 0
Q ss_pred ccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCC----CCchHHHHHHHhh-cCCChhHHHHHHHHHH
Q 006253 82 WLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHK----QWPELIGALLSNI-HQLPPHTKQATLETLG 156 (653)
Q Consensus 82 ~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~----~~~~l~~~l~~~l-~~~~~~~~~~~l~~l~ 156 (653)
+ .......+.|++.|.++++.++..++.+|..++....+.. .-...+|.|++.+ .+.++..++.++.+|.
T Consensus 122 ---i--~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~ 196 (354)
T 3nmw_A 122 ---L--CSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALW 196 (354)
T ss_dssp ---H--HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred ---H--HHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 0 0012346788999999999999999999999986411100 0135678888864 5678889999999999
Q ss_pred HHHhhhcccccchhh--HhHHHHHHHhcccCCCCC--HHHHHHHHHHHHHHHHhhhhhcCChhHH-----HHHHHHHHhh
Q 006253 157 YICEEVSSDAVEQDH--VNKILTAVVQGMNASESN--NDVRLAATRALYNALGFAQANFSNDMER-----DYIMRVVCEA 227 (653)
Q Consensus 157 ~l~~~~~~~~~~~~~--~~~l~~~l~~~l~~~~~~--~~vr~~a~~~l~~~~~~~~~~~~~~~~~-----~~il~~l~~~ 227 (653)
.++... ++.- ... ....+|.+.+.+...++. .+++..|+.+|.++..++.. .+..+ ...++.|..+
T Consensus 197 nLs~~~-~~nk-~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~---~~~~~~~i~~~g~i~~Lv~l 271 (354)
T 3nmw_A 197 NLSAHC-TENK-ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIAT---NEDHRQILRENNCLQTLLQH 271 (354)
T ss_dssp HHHTTC-HHHH-HHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHTTTHHHHHHHH
T ss_pred HHHccC-hhhh-HHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccC---CHHHHHHHHHcCCHHHHHHH
Confidence 887743 1110 111 246788888888742222 26888899999887754211 11111 2357888888
Q ss_pred hcCCcHHHHHHHHHHHHHHHHHhHHhhHHhHH-HHHHHHHHHhhcCChhHHHHHHHhHHHhhHH
Q 006253 228 TLSPEVKIRQAAFECLVAISSTYYEKLAPYIQ-DIFNITAKAVREDEEPVALQAIEFWSSVCDE 290 (653)
Q Consensus 228 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 290 (653)
+.+.+.++++.++.+|..++...++......+ ..+|.+...+.+.++.++..|...+..++..
T Consensus 272 L~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 272 LKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp TTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred HcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 88889999999999999998544443333333 5788888888888999999999888888864
No 88
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.40 E-value=2.8e-05 Score=76.40 Aligned_cols=229 Identities=12% Similarity=0.035 Sum_probs=148.9
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhhcCChhH--HHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhH-H-HHHH
Q 006253 188 SNNDVRLAATRALYNALGFAQANFSNDME--RDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYI-Q-DIFN 263 (653)
Q Consensus 188 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~--~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l-~-~l~~ 263 (653)
.++.++..|..+|.++...-...- ... ....++.|..++..++++++..++.+|..++.......+..+ + ..+|
T Consensus 96 ~~~~~q~~Aa~aL~nLa~~~~~~k--~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip 173 (354)
T 3nmw_A 96 YSITLRRYAGMALTNLTFGDVANK--ATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVK 173 (354)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHH--HHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHH--HHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHH
Confidence 356799999999998753211110 001 134588888888889999999999999998763111122222 2 4677
Q ss_pred HHHHH-hhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCcc
Q 006253 264 ITAKA-VREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGA 342 (653)
Q Consensus 264 ~~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~ 342 (653)
.+++. ....+++++..+...+..++....+ ....+.. ....+|.|+..+....+ ...
T Consensus 174 ~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~---------------nk~~i~~--~~Gai~~Lv~lL~~~~~-----~~~ 231 (354)
T 3nmw_A 174 ALMECALEVKKESTLKSVLSALWNLSAHCTE---------------NKADICA--VDGALAFLVGTLTYRSQ-----TNT 231 (354)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHTTCHH---------------HHHHHHH--STTHHHHHHHHTTCCCS-----SSC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHccChh---------------hhHHHHH--hcCcHHHHHHHhccCCC-----ccc
Confidence 77775 4556788888888887777641000 0001110 13567788877753221 111
Q ss_pred ccHhhhHHHHHHHHHhhc--CC----Cch-hchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHH-HHHHHHH
Q 006253 343 WNIAMAGGTCLGLVARTV--GD----DIV-PLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLV-NIALNFM 414 (653)
Q Consensus 343 ~~~r~~a~~~L~~l~~~~--~~----~~~-~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l-~~l~~~l 414 (653)
..++..|..+|..++... .+ .+. .-.++.+.+.+.+++...++.|+++|+.++.+. ++...... ...+|.+
T Consensus 232 ~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~i~~~G~i~~L 310 (354)
T 3nmw_A 232 LAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARN-PKDQEALWDMGAVSML 310 (354)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC-HHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCC-HHHHHHHHHCCCHHHH
Confidence 357788888898888631 11 111 124566667778888899999999999998653 23332322 2468999
Q ss_pred HHHhcCCCchHHHHHHHHHHHHHHhhhc
Q 006253 415 LTALMQDPNNHVKDTTAWTLGRMFEFLH 442 (653)
Q Consensus 415 l~~l~~d~~~~vr~~a~~~l~~~~~~~~ 442 (653)
...+ ++.++.+|..|+++|.+++..-+
T Consensus 311 v~LL-~s~~~~i~~~A~~aL~nL~~~~~ 337 (354)
T 3nmw_A 311 KNLI-HSKHKMIAMGSAAALRNLMANRP 337 (354)
T ss_dssp HTTT-TCSSHHHHHHHHHHHHHHHTTCC
T ss_pred HHHH-hCCCHHHHHHHHHHHHHHHcCCH
Confidence 9999 99999999999999999998653
No 89
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.39 E-value=2.8e-05 Score=68.30 Aligned_cols=216 Identities=14% Similarity=0.139 Sum_probs=151.0
Q ss_pred HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhH-HhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhh
Q 006253 218 DYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLA-PYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILE 296 (653)
Q Consensus 218 ~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 296 (653)
+..+..+..++.+.|+.++.+++..+..+....+.... ..++.+++.++....+.|+.+...|++++..+.+..
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~v----- 106 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDV----- 106 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTC-----
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCC-----
Confidence 34677888888899999999999999999998654444 456789999999999999999999999999988642
Q ss_pred hcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCCchhchHHHHHhhh
Q 006253 297 EYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENI 376 (653)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l 376 (653)
......+.++...+...+.... --.+..|++.++.+ -.-...+.++.++...+
T Consensus 107 ---------------pL~~~~y~Kl~~aL~dlik~~~---------~il~~eaae~Lgkl---kv~~~~~~V~~~l~sLl 159 (265)
T 3b2a_A 107 ---------------PMGSKTFLKAAKTLVSLLESPD---------DMMRIETIDVLSKL---QPLEDSKLVRTYINELV 159 (265)
T ss_dssp ---------------CBCHHHHHHHHHHHHHHTTSCC---------HHHHHHHHHHHHHC---CBSCCCHHHHHHHHHHH
T ss_pred ---------------CCCHHHHHHHHHHHHHHhcCCC---------chHHHHHHHHhCcC---CcccchHHHHHHHHHHH
Confidence 1122333445566665554211 13456677777766 33455788899999999
Q ss_pred cCcchhhHHHHHHHHHHhhcCCC-CCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccc
Q 006253 377 TKQEWRQREAATYAFGSILEGPS-PEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGN 455 (653)
Q Consensus 377 ~~~~~~~r~aal~~l~~i~~~~~-~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 455 (653)
.|.+.+++.+|+.++-.++.... +..+.. ++..+-..+ +++++.++..|+.++..+...- ..+..
T Consensus 160 ~Skd~~vK~agl~~L~eia~~S~D~~i~~~----I~~eI~elL-~~eD~~l~e~aLd~Le~ils~p---------i~~~~ 225 (265)
T 3b2a_A 160 VSPDLYTKVAGFCLFLNMLNSSADSGHLTL----ILDEIPSLL-QNDNEFIVELALDVLEKALSFP---------LLENV 225 (265)
T ss_dssp TCSSHHHHHHHHHHHHHHGGGCSSCCCGGG----TTTTHHHHH-TCSCHHHHHHHHHHHHHHTTSC---------CCSCC
T ss_pred hCCChhHHHHHHHHHHHhhcccCCHHHHHH----HHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCc---------ccHhH
Confidence 99999999999999999887432 233333 334444456 8889999999999999987652 13444
Q ss_pred hHHHHHHHHH--hcc---chhhHHHHHHH
Q 006253 456 CQQIISVLLQ--SMK---DVPNVAEKACG 479 (653)
Q Consensus 456 ~~~il~~l~~--~l~---d~~~v~~~a~~ 479 (653)
+..+...+.. ++- ..|.+|.+|-.
T Consensus 226 ~~~~~~~~~~v~~l~~~~~~~~~~~ka~~ 254 (265)
T 3b2a_A 226 KIELLKISRIVDGLVYREGAPIIRLKAKK 254 (265)
T ss_dssp HHHHHHHHHHHHHGGGCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCChhHHHHHHH
Confidence 4444443322 222 24667776643
No 90
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.33 E-value=7.7e-05 Score=68.80 Aligned_cols=179 Identities=13% Similarity=0.099 Sum_probs=133.1
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHhhCcchHHHHH---HHHHh---cCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhh
Q 006253 8 ILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSL---AGELV---NDEKPVESRKLAGLILKNALDAKEQHRKFELVQR 81 (653)
Q Consensus 8 ll~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~l---~~il~---~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~ 81 (653)
+...+.+.|...|-+|-+.|.+...+++.+.+..+ +..+. . +.+..+-..++.+|...+.... ..
T Consensus 51 ~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~-d~N~~v~~~~L~~L~~l~~~l~--------~~ 121 (266)
T 2of3_A 51 LMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFF-ETNPAALIKVLELCKVIVELIR--------DT 121 (266)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTT-SCCHHHHHHHHHHHHHHHHHHH--------HT
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHHH--------hc
Confidence 44556667888888888888876555444433332 33222 1 2367777778888887776432 11
Q ss_pred ccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhh
Q 006253 82 WLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEE 161 (653)
Q Consensus 82 ~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~ 161 (653)
-..+++.....+.+.|+.-++++...+|..+-.++..+.... | -+.+++.+.+.+.+.++.+|..++..+..+.+.
T Consensus 122 ~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~-~---~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~ 197 (266)
T 2of3_A 122 ETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVV-G---PLKMTPMLLDALKSKNARQRSECLLVIEYYITN 197 (266)
T ss_dssp TCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH-C---HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHC-C---HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 234777777788899999999999999999999998888765 4 145889999999999999999999999999998
Q ss_pred hcccccchhhHhHHH---HHHHhcccCCCCCHHHHHHHHHHHHHHHHhh
Q 006253 162 VSSDAVEQDHVNKIL---TAVVQGMNASESNNDVRLAATRALYNALGFA 207 (653)
Q Consensus 162 ~~~~~~~~~~~~~l~---~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~ 207 (653)
.... . ...+ +.+...++ |.+..||.+|++|+..+..+.
T Consensus 198 ~G~~-~-----~~~l~~~~~ia~ll~--D~d~~VR~aAl~~lve~y~~~ 238 (266)
T 2of3_A 198 AGIS-P-----LKSLSVEKTVAPFVG--DKDVNVRNAAINVLVACFKFE 238 (266)
T ss_dssp HCSG-G-----GGGGCHHHHHGGGGG--CSSHHHHHHHHHHHHHHHHHH
T ss_pred cCCC-c-----cccccchHHHHHHHc--CCCHHHHHHHHHHHHHHHHHh
Confidence 7432 1 2234 88888999 899999999999999877654
No 91
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.32 E-value=9.7e-06 Score=78.65 Aligned_cols=282 Identities=12% Similarity=0.124 Sum_probs=166.0
Q ss_pred HHhcCCCC---hHHHHHHHHHHHHHHhhh-cCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhHh
Q 006253 98 LKTLSSPA---HDARSTASQVVAKVAGIE-LPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVN 173 (653)
Q Consensus 98 l~~l~~~~---~~vr~~~~~~l~~ia~~~-~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~ 173 (653)
.+.++++. ...|..+..++..+...+ +|......++..+..+++++|...|+.+...+..+.+.- .+ +-
T Consensus 31 ~r~fn~~~~~~~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~-~e------~i 103 (355)
T 3tjz_B 31 ARVFNETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIA-ED------VI 103 (355)
T ss_dssp GGGTTSSSCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTS-SC------GG
T ss_pred HHHhcCCCCcHHHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH-HH------HH
Confidence 36677653 355667777777766542 121124578888899999999999999888887766652 22 12
Q ss_pred HHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHh
Q 006253 174 KILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEK 253 (653)
Q Consensus 174 ~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 253 (653)
-+.+.+.+-++ ++++-+|..|+.+++.+.. ......+.+.+.+.+.+.++.+|+.++-+...+....|+.
T Consensus 104 Lv~Nsl~kDl~--~~N~~iR~lALRtL~~I~~--------~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~ 173 (355)
T 3tjz_B 104 IVTSSLTKDMT--GKEDSYRGPAVRALCQITD--------STMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDV 173 (355)
T ss_dssp GGHHHHHHHHH--SSCHHHHHHHHHHHHHHCC--------TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHhhcC--CCcHhHHHHHHHHHhcCCC--------HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHH
Confidence 45566677777 7899999999999998532 1123567778888889999999999999999988888876
Q ss_pred hHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhcc
Q 006253 254 LAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQE 333 (653)
Q Consensus 254 ~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ 333 (653)
++.+ ++.+...+.+.++-+...|+.++..+.... +..+.++++.+...
T Consensus 174 v~~~----~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d-----------------------~~a~~kLv~~l~~~----- 221 (355)
T 3tjz_B 174 VKRW----VNEAQEAASSDNIMVQYHALGLLYHVRKND-----------------------RLAVSKMISKFTRH----- 221 (355)
T ss_dssp HHTT----HHHHHHHTTCSSHHHHHHHHHHHHHHHTTC-----------------------HHHHHHHHHHHHSS-----
T ss_pred HHHH----HHHHHHHhcCCCccHHHHHHHHHHHHHhhc-----------------------hHHHHHHHHHHhcC-----
Confidence 6544 444455667888888888887777776421 11222333332210
Q ss_pred CCccCCCccccHhhhHHHHHHHHHhhcCC---CchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHH
Q 006253 334 EDQDQDEGAWNIAMAGGTCLGLVARTVGD---DIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIA 410 (653)
Q Consensus 334 ed~~~d~~~~~~r~~a~~~L~~l~~~~~~---~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l 410 (653)
. --+.|. -...+..+....++ ..-..+++.+...+++.+..+.+.|+.++-.+.... .. .+...
T Consensus 222 --~--l~~~~~----q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~-~~----~~~~a 288 (355)
T 3tjz_B 222 --G--LKSPFA----YCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCS-AK----ELAPA 288 (355)
T ss_dssp --C--CSCHHH----HHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC----------------C
T ss_pred --C--CcChHH----HHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCC-HH----HHHHH
Confidence 0 001242 11223322222222 234577888888888888888888888877765421 11 12233
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHhhhc
Q 006253 411 LNFMLTALMQDPNNHVKDTTAWTLGRMFEFLH 442 (653)
Q Consensus 411 ~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~ 442 (653)
+..+...+ .++++.+|..|+..|..+....+
T Consensus 289 ~~~L~~fL-ss~d~niryvaLr~L~~l~~~~P 319 (355)
T 3tjz_B 289 VSVLQLFC-SSPKAALRYAAVRTLNKVAMKHP 319 (355)
T ss_dssp CCTHHHHH-HSSSSSSHHHHHHCC--------
T ss_pred HHHHHHHH-cCCCchHHHHHHHHHHHHHHHCc
Confidence 34444556 67888999999999999887654
No 92
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.29 E-value=0.00065 Score=59.80 Aligned_cols=148 Identities=11% Similarity=0.090 Sum_probs=115.8
Q ss_pred chHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhh
Q 006253 130 PELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQA 209 (653)
Q Consensus 130 ~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~ 209 (653)
.+.+..+...+.+.|+.++..++.++..+.+.. ++.+....+..+++.++..+. +.+..+...|++|+..++.-.+
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~-~~~l~~~~~e~~Ld~iI~llk--~~dEkval~A~r~L~~LLe~vp- 107 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRA-DSDLRMMVLERHLDVFINALS--QENEKVTIKALRALGYLVKDVP- 107 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTCC--STTHHHHHHHHHHHHHHHTTCC-
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhc-cccccHHHHHHHHHHHHHHHh--ccchhHHHHHHHHHHHHHcCCC-
Confidence 467888899999999999999999999999987 565545678899999999998 7889999999999999876432
Q ss_pred hcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhH
Q 006253 210 NFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCD 289 (653)
Q Consensus 210 ~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 289 (653)
-.+.....+...+......+++-.+..+.+.++.+ .+....+.++.++.+.+.+.+.+++..++.++..++.
T Consensus 108 --L~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl------kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~ 179 (265)
T 3b2a_A 108 --MGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL------QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLN 179 (265)
T ss_dssp --BCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC------CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGG
T ss_pred --CCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC------CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhc
Confidence 22223356777777777778888888888888776 1222345677777788888888998888888888775
No 93
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.21 E-value=0.00011 Score=69.93 Aligned_cols=189 Identities=10% Similarity=0.144 Sum_probs=140.3
Q ss_pred hccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcC---C----CCCchHHHHHHHhhcCCChhHHHHHHH
Q 006253 81 RWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELP---H----KQWPELIGALLSNIHQLPPHTKQATLE 153 (653)
Q Consensus 81 ~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~---~----~~~~~l~~~l~~~l~~~~~~~~~~~l~ 153 (653)
.|..+|- -+.|.+.+...|..+...+..+...... . ..|..+.+.+...+.|.+..+...++.
T Consensus 8 d~sklpl----------~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~ 77 (278)
T 4ffb_C 8 DYTTLPL----------EERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIV 77 (278)
T ss_dssp ---CCCH----------HHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHH
T ss_pred hhhcCCH----------HHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4666763 3568899999999999998887754211 0 136667778888889999999999999
Q ss_pred HHHHHHhhhccccc----chhhHhHHHHHHHh-cccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhh
Q 006253 154 TLGYICEEVSSDAV----EQDHVNKILTAVVQ-GMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEAT 228 (653)
Q Consensus 154 ~l~~l~~~~~~~~~----~~~~~~~l~~~l~~-~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~ 228 (653)
++..++..+..... ....+..++|.++. ++. +..+.+|..|+.++..++..... ...+++.+...+
T Consensus 78 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~--~~k~~~~~~a~~~l~~~~~~~~~-------~~~~~e~l~~~l 148 (278)
T 4ffb_C 78 ALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLT--SSRATTKTQSMSCILSLCGLDTS-------ITQSVELVIPFF 148 (278)
T ss_dssp HHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSS--CCCHHHHHHHHHHHHHHHHTSSS-------SHHHHHHHGGGG
T ss_pred HHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhc--CccHHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHH
Confidence 99999887632211 02345667777765 477 78899999999999887653211 145778888888
Q ss_pred cCCcHHHHHHHHHHHHHHHHHhHHh---hHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhh
Q 006253 229 LSPEVKIRQAAFECLVAISSTYYEK---LAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVC 288 (653)
Q Consensus 229 ~~~~~~~~~~~~~~l~~l~~~~~~~---~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~ 288 (653)
.+.++.++..++.+|..++..++.. ..+.++.+++.+...+.+.+++||..|.+++..+-
T Consensus 149 ~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly 211 (278)
T 4ffb_C 149 EKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIY 211 (278)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 8899999999999999999987643 34566778888888999999999999998876654
No 94
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.19 E-value=0.00038 Score=75.42 Aligned_cols=155 Identities=10% Similarity=0.104 Sum_probs=89.0
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhHhHHH-HHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhh
Q 006253 132 LIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKIL-TAVVQGMNASESNNDVRLAATRALYNALGFAQAN 210 (653)
Q Consensus 132 l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~-~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~ 210 (653)
++|. ++.++++++..|..|+.+|+.|++.-+...+ -.-..++ +.+...+. |++.+||.+|..+|.++.......
T Consensus 36 i~Pl-l~~L~S~~~~~r~~A~~al~~l~~~~~~~~l--~~~~~~v~~ll~~lL~--D~~~~Vr~~A~gaLrnL~~~~g~d 110 (684)
T 4gmo_A 36 ILPV-LKDLKSPDAKSRTTAAGAIANIVQDAKCRKL--LLREQVVHIVLTETLT--DNNIDSRAAGWEILKVLAQEEEAD 110 (684)
T ss_dssp THHH-HHHHSSSCCSHHHHHHHHHHHHTTSHHHHHH--HHHTTHHHHHHHTTTT--CSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHH-HHHcCCCCHHHHHHHHHHHHHHHcCcHHHHH--HHHcCCHHHHHHHHcC--CCCHHHHHHHHHHHHHHHhhcCch
Confidence 4454 4568999999999999999999874311111 1123344 44566777 899999999999999887532111
Q ss_pred cCChhHHHHHHHHHHhhhc--------------CCc-------HHHHHHHHHHHHHHHHHhHHhhHHhH-HHHHHHHHHH
Q 006253 211 FSNDMERDYIMRVVCEATL--------------SPE-------VKIRQAAFECLVAISSTYYEKLAPYI-QDIFNITAKA 268 (653)
Q Consensus 211 ~~~~~~~~~il~~l~~~~~--------------~~~-------~~~~~~~~~~l~~l~~~~~~~~~~~l-~~l~~~~~~~ 268 (653)
.....++..+++.+...+. ... +++...++.+|..+++...+.+.... ...++.++..
T Consensus 111 ~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~ 190 (684)
T 4gmo_A 111 FCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFR 190 (684)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHH
Confidence 1111111223333322211 011 23444566677777765544333222 1344444444
Q ss_pred hhc---CChhHHHHHHHhHHHhhHHH
Q 006253 269 VRE---DEEPVALQAIEFWSSVCDEE 291 (653)
Q Consensus 269 ~~~---~~~~~~~~a~~~~~~~~~~~ 291 (653)
+.+ ...+++..+.+++..+++..
T Consensus 191 L~~~~~~~~~v~~~a~~~L~~ls~dn 216 (684)
T 4gmo_A 191 LISADIAPQDIYEEAISCLTTLSEDN 216 (684)
T ss_dssp HHHHCCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHhcCCCcHHHHHHHHHHHHHHhccC
Confidence 322 34578889999999888753
No 95
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=98.13 E-value=0.00013 Score=81.12 Aligned_cols=408 Identities=11% Similarity=0.060 Sum_probs=203.5
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHhhh--cCC----CCCchHHHHHHHhhc-CCChhHHHHHHHHHHHHHhhhcc
Q 006253 92 QIKSFILKTLSSPAHDARSTASQVVAKVAGIE--LPH----KQWPELIGALLSNIH-QLPPHTKQATLETLGYICEEVSS 164 (653)
Q Consensus 92 ~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~--~~~----~~~~~l~~~l~~~l~-~~~~~~~~~~l~~l~~l~~~~~~ 164 (653)
.+++.+-....+.+..-...+|++++-+.... +|. ..|.-+.|.|...+. +-+++....=..++..+....+|
T Consensus 508 ~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~~~~Dp 587 (997)
T 1vsy_5 508 DLFELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLPAVVDL 587 (997)
T ss_dssp GHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHHHSCG
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhcCCCh
Confidence 35555556667777777889999999997642 221 246678888888888 45665544444455555555444
Q ss_pred cccchhhHhHHHHHHHh--c-ccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHH
Q 006253 165 DAVEQDHVNKILTAVVQ--G-MNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFE 241 (653)
Q Consensus 165 ~~~~~~~~~~l~~~l~~--~-l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~ 241 (653)
... ..++..+.. . +..+..+.-.....+..|..++....-.+.. .+.++..+. ++++...+|..+-.
T Consensus 588 rR~-----~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~---~~~~l~~~~--l~h~y~~VRe~Ig~ 657 (997)
T 1vsy_5 588 RRS-----KTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPD---VGKLFDELV--FDHPYDQVRQAVAK 657 (997)
T ss_dssp GGC-----HHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCC---CHHHHHHCC--SCCSCHHHHHHHHH
T ss_pred hhh-----HHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhcccccc---HHHHHHHHH--hCCChHHHHHHHHH
Confidence 433 345555522 1 1100111111111233333332211111111 144555544 67788899999888
Q ss_pred HHHHHHHHhHHhhHHhHHHHHHHHHHH---hh----cCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCC-C-----
Q 006253 242 CLVAISSTYYEKLAPYIQDIFNITAKA---VR----EDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSD-I----- 308 (653)
Q Consensus 242 ~l~~l~~~~~~~~~~~l~~l~~~~~~~---~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----- 308 (653)
.|..+.......--+....++...... +. ...+.+.....+....+.... ...+...+.....+. .
T Consensus 658 ~L~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~-~~~~~~~~~~~~~s~y~~~~kT 736 (997)
T 1vsy_5 658 LLTTLVQNQSNPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLE-DSVVGLNPQQFIKTDYFYRTST 736 (997)
T ss_dssp HHHHHHHTSCCCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGG-GTTSSCCSTTTTTSHHHHHHHH
T ss_pred HHHHHHHhhcccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhh-hcccccCccccchHHHHHHHHH
Confidence 888877754200001122222211110 00 000111110111100110000 000000000000000 0
Q ss_pred -----------chhhHHHhhhhh-hHHHHHHHhhhccCCccCCCccccHhhh-HHHHHHHHHhhc-CCCchhchHHHHHh
Q 006253 309 -----------PCFYFIKHALPV-LVPLLLETLLKQEEDQDQDEGAWNIAMA-GGTCLGLVARTV-GDDIVPLVMPFVEE 374 (653)
Q Consensus 309 -----------~~~~~~~~~l~~-l~~~l~~~l~~~~ed~~~d~~~~~~r~~-a~~~L~~l~~~~-~~~~~~~l~~~l~~ 374 (653)
.......++++. ++|.++.. .++.| ++ .+... |..++..++... +...++.++..+.+
T Consensus 737 vl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l----~~~~d-~~---eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~ 808 (997)
T 1vsy_5 737 IFYWIKEMARGPNKVLLVPYLVDYVLPFLIGL----VKHKD-VC---ALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCS 808 (997)
T ss_dssp HHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTT----SSCSH-HH---HHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSC
T ss_pred HHHHHHHHhcCCCccchhhhhHHHHHHHHHHH----hhcCc-HH---HHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 000112223333 44444332 11111 11 23344 556666665433 44556666666666
Q ss_pred hhc-CcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHHHHhhh-ccCCCCcccc
Q 006253 375 NIT-KQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPN-NHVKDTTAWTLGRMFEFL-HGSTLETPII 451 (653)
Q Consensus 375 ~l~-~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~-~~vr~~a~~~l~~~~~~~-~~~~~~~~~~ 451 (653)
... +++| .|.+++..+..+.-...-.........+...++..| .|++ ..||+.|..+|+.+..+. ..
T Consensus 809 ~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L-~D~q~~EVRe~Aa~tLsgll~c~~~~-------- 878 (997)
T 1vsy_5 809 SNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNL-YNEQFVEVRVRAASILSDIVHNWKEE-------- 878 (997)
T ss_dssp TTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTT-TCSSCHHHHHHHHHHHHHHHHSCCSH--------
T ss_pred HHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHHHcCCch--------
Confidence 665 6789 999998776554321000000112246778888889 9999 999999999999987654 20
Q ss_pred CccchHHHHHHHHHhcc------------c-hhhHHHHHHHHHHHHHhcccCCCCCCCCC--chhHHHHHHHHHHhcccc
Q 006253 452 NQGNCQQIISVLLQSMK------------D-VPNVAEKACGALYFLAQGFEDAISPSSPL--TPFFQEIVQALLTVTHRE 516 (653)
Q Consensus 452 ~~~~~~~il~~l~~~l~------------d-~~~v~~~a~~al~~~~~~~~~~~~~~~~l--~~~l~~i~~~L~~~l~~~ 516 (653)
.....++..+...+. + +...+-.|.-+|+.++..+ +-.+ .+++|+++..|....+++
T Consensus 879 --~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~------Py~vP~P~w~P~~l~~La~~~~~~ 950 (997)
T 1vsy_5 879 --QPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAF------PYVFPLPPWIPKNLSNLSSWARTS 950 (997)
T ss_dssp --HHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTC------SCCSSCCTHHHHHHHHHHTTSSSC
T ss_pred --hhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhC------CCCCCCCcccHHHHHHHHHHhCCC
Confidence 111223332222220 1 1134567888999999874 3333 679999999998888774
Q ss_pred ccchhchHHHHHHHHHHHHHhccc
Q 006253 517 DAGESRLRTAAYETLNEVVRCSTD 540 (653)
Q Consensus 517 ~~~~~~~~~~~~~~l~~l~~~~~~ 540 (653)
+ -++..+=++++.+-+...+
T Consensus 951 ~----~i~~tvk~tlseFkrTH~D 970 (997)
T 1vsy_5 951 G----MTGNAAKNTISEFKKVRAD 970 (997)
T ss_dssp S----SHHHHTHHHHHHHHHHTST
T ss_pred C----chHHHHHHHHHHHHhccch
Confidence 3 4777788888887666543
No 96
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.11 E-value=9.9e-07 Score=73.44 Aligned_cols=121 Identities=13% Similarity=0.205 Sum_probs=75.2
Q ss_pred chhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhcc
Q 006253 364 IVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHG 443 (653)
Q Consensus 364 ~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~ 443 (653)
..+.-.+.+...+.++++.+|..++.+|+.+... . ++.++..+ +|+++.||..|+++|+++..
T Consensus 9 ~~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~----~--------~~~L~~~L-~d~~~~vR~~A~~aL~~~~~---- 71 (131)
T 1te4_A 9 HHSSGLVPRGSHMADENKWVRRDVSTALSRMGDE----A--------FEPLLESL-SNEDWRIRGAAAWIIGNFQD---- 71 (131)
T ss_dssp ------------CCSSCCCSSSSCCSSTTSCSST----T--------HHHHHHGG-GCSCHHHHHHHHHHHGGGCS----
T ss_pred cccccHHHHHHHhcCCCHHHHHHHHHHHHHhCch----H--------HHHHHHHH-cCCCHHHHHHHHHHHHhcCC----
Confidence 3445556666778888888888888887765431 1 36667778 88888899988888887642
Q ss_pred CCCCccccCccchHHHHHHHHHhccc-hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccchhc
Q 006253 444 STLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESR 522 (653)
Q Consensus 444 ~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~ 522 (653)
...++.|...+.| ++.||..|+.+|..+-. +..++.|...+++. +..
T Consensus 72 -------------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------------~~a~~~L~~~l~d~---~~~ 119 (131)
T 1te4_A 72 -------------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------------ERVRAAMEKLAETG---TGF 119 (131)
T ss_dssp -------------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------------HHHHHHHHHHTTSC---CTH
T ss_pred -------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------------HHHHHHHHHHHhCC---CHH
Confidence 1235666666665 68888888888887631 23456666666544 356
Q ss_pred hHHHHHHHHHH
Q 006253 523 LRTAAYETLNE 533 (653)
Q Consensus 523 ~~~~~~~~l~~ 533 (653)
+|..+..+|+.
T Consensus 120 vr~~A~~aL~~ 130 (131)
T 1te4_A 120 ARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHGGG
T ss_pred HHHHHHHHHHh
Confidence 78777777653
No 97
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=98.07 E-value=0.00013 Score=72.47 Aligned_cols=161 Identities=10% Similarity=0.094 Sum_probs=113.4
Q ss_pred ccccHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcC
Q 006253 341 GAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQ 420 (653)
Q Consensus 341 ~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~ 420 (653)
....+|..|+++|+.+ ...+++ .. ++..+...+..+.|++|++++..+..+.+-. .. ++.+++.++.+| +
T Consensus 240 VVAPVRETaAQtLGaL-~hLp~e-~~-IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL-----~~-Ld~Vv~aVL~GL-~ 309 (800)
T 3oc3_A 240 TVAPVRDAAAYLLSRI-YPLIGP-ND-IIEQLVGFLDSGDWQVQFSGLIALGYLKEFV-----ED-KDGLCRKLVSLL-S 309 (800)
T ss_dssp CBCHHHHHHHHHHHHH-TTTSCS-CC-HHHHHTTGGGCSCHHHHHHHHHHHHHTGGGC-----CC-HHHHHHHHHHHT-T
T ss_pred eeeehHHHHHHHHHHH-HhCChh-HH-HHHHHHhhcCCCCeeehhhhHHHHHHHHHHH-----HH-HHHHHHHHHhhc-C
Confidence 3457999999999999 777666 33 3333334557788999999999999883322 12 788999999999 9
Q ss_pred CCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc--h-hhHHHHHHHHHHHHHhcccCCCCCCCC
Q 006253 421 DPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD--V-PNVAEKACGALYFLAQGFEDAISPSSP 497 (653)
Q Consensus 421 d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d--~-~~v~~~a~~al~~~~~~~~~~~~~~~~ 497 (653)
|.+.-||..|+.+|--++ ....+..++..+...|.+ + ..........|..++..-. ...
T Consensus 310 D~DDDVRAVAAetLiPIA-------------~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~-----~a~ 371 (800)
T 3oc3_A 310 SPDEDIKLLSAELLCHFP-------------ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENP-----ELS 371 (800)
T ss_dssp CSSHHHHHHHHHHHTTSC-------------CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCT-----TCC
T ss_pred CcccHHHHHHHHHhhhhc-------------chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCc-----ccc
Confidence 999999999998887666 135678888888888773 2 1222333455566665311 111
Q ss_pred CchhHHHHHHHHHHhccccccchhchHHHHHHHHHHHH
Q 006253 498 LTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVV 535 (653)
Q Consensus 498 l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~ 535 (653)
..| .++|.|...+..+- .+||..++.++..+.
T Consensus 372 ~dp---~LVPRL~PFLRHtI---TSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 372 IPP---ERLKDIFPCFTSPV---PEVRTSILNMVKNLS 403 (800)
T ss_dssp CCS---GGGGGTGGGGTCSS---HHHHHHHHHHTTTCC
T ss_pred cCh---HHHHHHHhhhcCCc---HHHHHHHHHHHHHHH
Confidence 222 77888888887664 679988888887765
No 98
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=98.01 E-value=0.00077 Score=67.21 Aligned_cols=252 Identities=11% Similarity=0.048 Sum_probs=156.6
Q ss_pred CCc-hHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcc-----cccchhhHhHHHHHH-HhcccC---CCCCHHHHHHHH
Q 006253 128 QWP-ELIGALLSNIHQLPPHTKQATLETLGYICEEVSS-----DAVEQDHVNKILTAV-VQGMNA---SESNNDVRLAAT 197 (653)
Q Consensus 128 ~~~-~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~-----~~~~~~~~~~l~~~l-~~~l~~---~~~~~~vr~~a~ 197 (653)
.|| ++.+.|..-+-++++++|.+|..+|.++++.... ....++....++-.+ +.-+.+ +..-.-||+.+.
T Consensus 170 eWPfqfcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaA 249 (800)
T 3oc3_A 170 ENVLDFFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAA 249 (800)
T ss_dssp CSGGGTTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHH
Confidence 564 5889999999999999999999999999987621 111111122222221 222331 123446999999
Q ss_pred HHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhcCChhHH
Q 006253 198 RALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVA 277 (653)
Q Consensus 198 ~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 277 (653)
++|+.+ .++++.+ .++..+......+.|++|...+-.+.-+ .+.+.. ++.+++.++..+.+.|++||
T Consensus 250 QtLGaL-~hLp~e~-------~IL~qLV~~l~~~~WEVRHGGLLGLKYL----~DLL~~-Ld~Vv~aVL~GL~D~DDDVR 316 (800)
T 3oc3_A 250 YLLSRI-YPLIGPN-------DIIEQLVGFLDSGDWQVQFSGLIALGYL----KEFVED-KDGLCRKLVSLLSSPDEDIK 316 (800)
T ss_dssp HHHHHH-TTTSCSC-------CHHHHHTTGGGCSCHHHHHHHHHHHHHT----GGGCCC-HHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHH-HhCChhH-------HHHHHHHhhcCCCCeeehhhhHHHHHHH----HHHHHH-HHHHHHHHHhhcCCcccHHH
Confidence 999998 6665431 2333333455678899999988777755 233222 78899999999999999999
Q ss_pred HHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHH
Q 006253 278 LQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVA 357 (653)
Q Consensus 278 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~ 357 (653)
..|.+.|.-++.. ..+ +.++..+-..+... + |-+ .-.....+.|..+.
T Consensus 317 AVAAetLiPIA~p---------------------~~l----~~LL~iLWd~L~~L-D-----DLS-ASTgSVMdLLAkL~ 364 (800)
T 3oc3_A 317 LLSAELLCHFPIT---------------------DSL----DLVLEKCWKNIESE-E-----LIS-VSKTSNLSLLTKIY 364 (800)
T ss_dssp HHHHHHHTTSCCS---------------------STH----HHHHHHHHHHHHTC-C-----SCC-TTHHHHHHHHHHHH
T ss_pred HHHHHHhhhhcch---------------------hhH----HHHHHHHHHHhhhh-c-----ccc-hhhHHHHHHHHHHH
Confidence 9988877666610 112 23444444444432 1 111 11123345555555
Q ss_pred hhcCC-CchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 006253 358 RTVGD-DIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLG 435 (653)
Q Consensus 358 ~~~~~-~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~ 435 (653)
..... ...|.++|.+-..+.++-..+|.|++.++..+. ....+..+++.+ + -.++..|+..+..+..
T Consensus 365 s~p~~a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL-------~~~~LRLIFQNI---L-LE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 365 RENPELSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS-------EESIDFLVAEVV---L-IEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHCTTCCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC-------CHHHHHHHHHHH---H-HCSCHHHHHHHHHHHH
T ss_pred cCCcccccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH-------hhhHHHHHHHHH---H-hCCcHHHHHHHHHHHH
Confidence 54322 223455555556677777889999999987766 123344444443 3 5678889988877764
No 99
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.98 E-value=0.0044 Score=64.09 Aligned_cols=326 Identities=10% Similarity=0.093 Sum_probs=187.8
Q ss_pred CCchHHHHHHHhhcCC-ChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHh
Q 006253 128 QWPELIGALLSNIHQL-PPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGF 206 (653)
Q Consensus 128 ~~~~l~~~l~~~l~~~-~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~ 206 (653)
.-.+.++.|...+++. -..-|+.|+..|..+.+.+ +..+ ...-++.+++.|..+..+.++-+.++++|..+..-
T Consensus 18 s~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y-~~~V----g~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~ 92 (651)
T 3grl_A 18 TEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKY-RLEV----GIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISN 92 (651)
T ss_dssp CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTT-TTHH----HHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCC
T ss_pred ChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHh-HHHh----hhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCC
Confidence 3457778888887654 4677888999999888776 4333 22334555566655346778888888888776532
Q ss_pred hhhhc---------CChh--HH------HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhHH---HHHHHHH
Q 006253 207 AQANF---------SNDM--ER------DYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQ---DIFNITA 266 (653)
Q Consensus 207 ~~~~~---------~~~~--~~------~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~---~l~~~~~ 266 (653)
....- .... +. ..-++.++.+++..+..+|-.++++|..+....++.....+- .-++.++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv 172 (651)
T 3grl_A 93 DEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLM 172 (651)
T ss_dssp C--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHH
T ss_pred CCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHH
Confidence 11100 0000 11 124677788888899999999999999999998876655543 4677778
Q ss_pred HHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccccHh
Q 006253 267 KAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIA 346 (653)
Q Consensus 267 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r 346 (653)
..+.+..+.+|-.++-++..++....++. +.+ .++..++.++..+.... .- .-.
T Consensus 173 ~lL~d~rE~iRneallLL~~Lt~~n~~iQ----------------klV--AFEnaFe~Lf~Ii~~Eg-~~-------~Gg 226 (651)
T 3grl_A 173 DLLADSREVIRNDGVLLLQALTRSNGAIQ----------------KIV--AFENAFERLLDIITEEG-NS-------DGG 226 (651)
T ss_dssp GGGGCSSHHHHHHHHHHHHHHHTTCHHHH----------------HHH--HHTTHHHHHHHHHHHHT-GG-------GSH
T ss_pred HHHhCchHHHHHHHHHHHHHHhcCCHHHH----------------HHH--HHhccHHHHHHHHHhcC-CC-------ccc
Confidence 88888899999999999988886432221 111 13345566666655211 10 011
Q ss_pred hhHHHHHHHHHhhcC-----------CCchhchHHHHHhhhcCcchhhHH-----HHHHHHHHhhcCCCCC-cch----H
Q 006253 347 MAGGTCLGLVARTVG-----------DDIVPLVMPFVEENITKQEWRQRE-----AATYAFGSILEGPSPE-KLV----P 405 (653)
Q Consensus 347 ~~a~~~L~~l~~~~~-----------~~~~~~l~~~l~~~l~~~~~~~r~-----aal~~l~~i~~~~~~~-~~~----~ 405 (653)
....+||..+...+. ...+|.+.+++...-....|..+. +++.++..++....+. ... .
T Consensus 227 ivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~ 306 (651)
T 3grl_A 227 IVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKA 306 (651)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHH
Confidence 234455554444332 234555555443211123464332 2344455555542210 010 1
Q ss_pred -HHHHHHHHHHHHhcCCC--chHHHHHHHHHHHHHHhhhccC-C----CCccccCccchHHHHHHHHHhccc--hhhHHH
Q 006253 406 -LVNIALNFMLTALMQDP--NNHVKDTTAWTLGRMFEFLHGS-T----LETPIINQGNCQQIISVLLQSMKD--VPNVAE 475 (653)
Q Consensus 406 -~l~~l~~~ll~~l~~d~--~~~vr~~a~~~l~~~~~~~~~~-~----~~~~~~~~~~~~~il~~l~~~l~d--~~~v~~ 475 (653)
+-..+++.++..+ -.+ ...+|..|+.+++.+....+.. . ...|. .+-.+.++..+...+.+ ...+|.
T Consensus 307 ~~~~g~l~~Ll~ll-~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~--~~~~p~li~lL~~~~~~~~~~~lR~ 383 (651)
T 3grl_A 307 MFQCGLLQQLCTIL-MATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPS--NPPRPAIVVLLMSMVNERQPFVLRC 383 (651)
T ss_dssp HHHTTHHHHHHHHH-TCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESS--SSCEEHHHHHHHHHTCTTSCHHHHH
T ss_pred HHHCCCHHHHHHHH-ccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCC--CCCcChHHHHHHHHhcccccHHHHH
Confidence 1123566677766 433 4678999999999877533210 0 00000 01123455555555554 367899
Q ss_pred HHHHHHHHHHhc
Q 006253 476 KACGALYFLAQG 487 (653)
Q Consensus 476 ~a~~al~~~~~~ 487 (653)
+|+.++..++..
T Consensus 384 Aa~~cl~ay~~~ 395 (651)
T 3grl_A 384 AVLYCFQCFLYK 395 (651)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhC
Confidence 999999988743
No 100
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.96 E-value=5.2e-05 Score=73.58 Aligned_cols=246 Identities=11% Similarity=0.024 Sum_probs=144.9
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhhCcchHH---HHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhh
Q 006253 5 VTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFL---LSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQR 81 (653)
Q Consensus 5 l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~---~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~ 81 (653)
+..++..+.++|.+.|+-..-.+..+.+. +++.+ ..+.+=+. +.++-+|-.|...+.+...
T Consensus 70 f~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~iLv~Nsl~kDl~--~~N~~iR~lALRtL~~I~~------------- 133 (355)
T 3tjz_B 70 FFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDVIIVTSSLTKDMT--GKEDSYRGPAVRALCQITD------------- 133 (355)
T ss_dssp HHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCGGGGHHHHHHHHH--SSCHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHhhcC--CCcHhHHHHHHHHHhcCCC-------------
Confidence 34456678899999999999999888766 23332 22333333 3478999999999988664
Q ss_pred ccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhh
Q 006253 82 WLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEE 161 (653)
Q Consensus 82 ~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~ 161 (653)
++..+.+.+.+-+++.+.++.||++|+.+...+.... |+ ....+++.+.+.+.+.++.+...|+.++..+.+.
T Consensus 134 -----~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~-pe-~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~ 206 (355)
T 3tjz_B 134 -----STMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCS-FD-VVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKN 206 (355)
T ss_dssp -----TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC-HH-HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT
T ss_pred -----HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccC-HH-HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhh
Confidence 3344567777889999999999999999988887543 31 2224566777778888999988888888887653
Q ss_pred hcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHH
Q 006253 162 VSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFE 241 (653)
Q Consensus 162 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~ 241 (653)
- ...+..+++.+..+- -.++-....-++.+.. +.++.. ......+++.+...+++.++.+.-++++
T Consensus 207 d------~~a~~kLv~~l~~~~---l~~~~~q~~llr~l~~---~~~~d~--~~~~~~~~~~l~~~L~~~~~aVvyEa~k 272 (355)
T 3tjz_B 207 D------RLAVSKMISKFTRHG---LKSPFAYCMMIRVASR---QLEDED--GSRDSPLFDFIESCLRNKHEMVVYEAAS 272 (355)
T ss_dssp C------HHHHHHHHHHHHSSC---CSCHHHHHHHHHHHTC---C-------------------CCCCCSSHHHHHHHHH
T ss_pred c------hHHHHHHHHHHhcCC---CcChHHHHHHHHHHHH---hccccc--hhhHHHHHHHHHHHHcCCChHHHHHHHH
Confidence 2 234555666555421 1233333333333322 222210 1123568888888888888888888888
Q ss_pred HHHHHHHHhHHhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHH
Q 006253 242 CLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEE 291 (653)
Q Consensus 242 ~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 291 (653)
++..+-......+ ...+..+...+.+.++++|..|++.+..+....
T Consensus 273 ~I~~l~~~~~~~~----~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~ 318 (355)
T 3tjz_B 273 AIVNLPGCSAKEL----APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKH 318 (355)
T ss_dssp HHTC---------------CCCTHHHHHHSSSSSSHHHHHHCC-------
T ss_pred HHHhccCCCHHHH----HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHC
Confidence 8887654222211 222333334466788899999998888887643
No 101
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.86 E-value=3.1e-05 Score=64.27 Aligned_cols=104 Identities=18% Similarity=0.274 Sum_probs=79.9
Q ss_pred ccHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCC
Q 006253 343 WNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDP 422 (653)
Q Consensus 343 ~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~ 422 (653)
+.+|..|..+|..+ ++.. ++.+.+.+.|++|.+|..++++++.+.. +..++.+...+ +|+
T Consensus 26 ~~vR~~A~~~L~~~----~~~~----~~~L~~~L~d~~~~vR~~A~~aL~~~~~-----------~~a~~~L~~~L-~d~ 85 (131)
T 1te4_A 26 KWVRRDVSTALSRM----GDEA----FEPLLESLSNEDWRIRGAAAWIIGNFQD-----------ERAVEPLIKLL-EDD 85 (131)
T ss_dssp CCSSSSCCSSTTSC----SSTT----HHHHHHGGGCSCHHHHHHHHHHHGGGCS-----------HHHHHHHHHHH-HHC
T ss_pred HHHHHHHHHHHHHh----CchH----HHHHHHHHcCCCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHH-cCC
Confidence 56777777666543 2222 3667778889999999999999998763 23467788888 999
Q ss_pred chHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc-hhhHHHHHHHHHHH
Q 006253 423 NNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYF 483 (653)
Q Consensus 423 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~ 483 (653)
++.||..|+++|+++.. ...++.|...+.| ++.||..|+.+|..
T Consensus 86 ~~~VR~~A~~aL~~~~~-----------------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 86 SGFVRSGAARSLEQIGG-----------------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp CTHHHHHHHHHHHHHCS-----------------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred CHHHHHHHHHHHHHhCc-----------------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 99999999999998752 2356777788876 78999999988764
No 102
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=97.53 E-value=0.00059 Score=62.07 Aligned_cols=178 Identities=12% Similarity=0.032 Sum_probs=114.8
Q ss_pred chHHHHHhhhcCcch--hhHHHHHHHHHHhhcCCCCCcchHHH-HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhcc
Q 006253 367 LVMPFVEENITKQEW--RQREAATYAFGSILEGPSPEKLVPLV-NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHG 443 (653)
Q Consensus 367 ~l~~~l~~~l~~~~~--~~r~aal~~l~~i~~~~~~~~~~~~l-~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~ 443 (653)
..+|.+.+.+.+++. ..+..+..++..++.+. ...-.... ...+|.++..| .++++.++..|+|+|.+++..-.+
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~-~~~r~~I~~~G~Ip~LV~lL-~s~~~~vq~~Aa~aL~nLa~~~~~ 85 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQK-SEARKRVNQLRGILKLLQLL-KVQNEDVQRAVCGALRNLVFEDND 85 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHTTHHHHHHHGG-GCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCC-cHHHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHhCCHH
Confidence 456666778888877 77777888888888642 12111222 24679999999 999999999999999999864221
Q ss_pred CCCCccccCccc--hHHHHHHHHHhcc-c-hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccc----
Q 006253 444 STLETPIINQGN--CQQIISVLLQSMK-D-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHR---- 515 (653)
Q Consensus 444 ~~~~~~~~~~~~--~~~il~~l~~~l~-d-~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~---- 515 (653)
.+.. -...+|.|++.+. . +..+++.|+.+|.++...... + ......-++.|+..+..
T Consensus 86 --------nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~----k---~~i~~~~i~~Lv~ll~~p~sG 150 (233)
T 3tt9_A 86 --------NKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKL----K---NLMITEALLTLTENIIIPFSG 150 (233)
T ss_dssp --------HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGG----H---HHHHHHHHHHHCCCCCHHHHC
T ss_pred --------HHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhh----H---HHHHhccHHHHHHHHhccccC
Confidence 1111 2246888888886 3 678999999999988753210 1 12334456666654420
Q ss_pred -cc--------cchhchHHHHHHHHHHHHHhcccccHHHHH---HHHHHHHHHHHHHHH
Q 006253 516 -ED--------AGESRLRTAAYETLNEVVRCSTDETAPMVM---QLVPLIMMELHQTLE 562 (653)
Q Consensus 516 -~~--------~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~---~l~~~l~~~l~~~~~ 562 (653)
.+ ..+..++..+..+|..+..... +....+. .+++.++..++..++
T Consensus 151 ~~~~~~~~~~~~~~~~v~~na~~~L~nLss~~~-~~R~~~r~~~Gli~~Lv~~l~~~~~ 208 (233)
T 3tt9_A 151 WPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGA-DGRKAMRRCDGLIDSLVHYVRGTIA 208 (233)
T ss_dssp CCGGGCCCCCTTCCHHHHHHHHHHHHHHTTSCH-HHHHHHHTSTTHHHHHHHHHHHHHH
T ss_pred CcccccccccccchHHHHHHHHHHHHHHhcCCH-HHHHHHHHCCCcHHHHHHHHHhhhh
Confidence 00 0134788889999988876432 2223222 367778888877654
No 103
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=97.35 E-value=0.0063 Score=54.18 Aligned_cols=147 Identities=14% Similarity=0.076 Sum_probs=109.3
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHH-hhcCCChhHHHHHHHHHHHHHhhhcccccch
Q 006253 91 AQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLS-NIHQLPPHTKQATLETLGYICEEVSSDAVEQ 169 (653)
Q Consensus 91 ~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~-~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~ 169 (653)
+.+......+..++...+|-.++.+++.. . + -++.++.+.. ...++.+.+|+.+..+++.++....|+.
T Consensus 70 ~~~~~la~~L~~~~~deVR~~Av~lLg~~-~---~---~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~--- 139 (240)
T 3l9t_A 70 EYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S---K---DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK--- 139 (240)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T---T---SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT---
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHhc-c---C---cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH---
Confidence 44455555566677789999999987776 2 2 2788999988 5567899999999999999886332442
Q ss_pred hhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q 006253 170 DHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISST 249 (653)
Q Consensus 170 ~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~ 249 (653)
.++.+...+. |++..||..|+.....+... .......+.+++.+..+..+++.-+|+++-..|..+...
T Consensus 140 -----~l~~~~~W~~--d~n~~VRR~Ase~~rpW~~~----~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~ 208 (240)
T 3l9t_A 140 -----ALPIIDEWLK--SSNLHTRRAATEGLRIWTNR----PYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK 208 (240)
T ss_dssp -----THHHHHHHHH--CSSHHHHHHHHHHTCSGGGS----TTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred -----HHHHHHHHhc--CCCHHHHHHHHHhhHHHhcc----chhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence 3345566677 89999999999987653221 111123467899999999999999999999999999999
Q ss_pred hHHhhHHhH
Q 006253 250 YYEKLAPYI 258 (653)
Q Consensus 250 ~~~~~~~~l 258 (653)
.|+.+..++
T Consensus 209 ~Pd~V~~~~ 217 (240)
T 3l9t_A 209 FPDLVKIEL 217 (240)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 888766544
No 104
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=97.35 E-value=0.038 Score=61.71 Aligned_cols=414 Identities=8% Similarity=0.024 Sum_probs=202.1
Q ss_pred HHHHHHHHHHHHHHhh---hcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhc---ccccchhhHhHHHHHHH
Q 006253 107 DARSTASQVVAKVAGI---ELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVS---SDAVEQDHVNKILTAVV 180 (653)
Q Consensus 107 ~vr~~~~~~l~~ia~~---~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~---~~~~~~~~~~~l~~~l~ 180 (653)
..+..-+..+..+++. .++...++.+.+.+.....+.+......+.++++-++.... .+.. ...-.-+.|.+.
T Consensus 481 ~F~~~~v~l~k~lf~l~~rn~~~~~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~-~~~w~~l~p~l~ 559 (997)
T 1vsy_5 481 VFSSGNVSFFSLVILLISSGFCELNMSDLFELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDL-DKRDTFIENFLA 559 (997)
T ss_dssp CCCHHHHHHHHHHHHHHTTTTCCCCGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTH-HHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHhcccchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHH-HHHHHHHHHHHH
Confidence 3355556666666642 23334789999999998888888888889999988877642 1222 233445666666
Q ss_pred hcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhh-----cCCcHHHHHHHHHHHHHHHHHhHHhhH
Q 006253 181 QGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEAT-----LSPEVKIRQAAFECLVAISSTYYEKLA 255 (653)
Q Consensus 181 ~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~-----~~~~~~~~~~~~~~l~~l~~~~~~~~~ 255 (653)
..+.+ +-+++.... ...++.++....+... ...+++.+...- +.+..-.....+..|..++...+-.+.
T Consensus 560 ~~l~~-~lt~et~~~----W~~~i~~~~~~~DprR-~~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~ 633 (997)
T 1vsy_5 560 KCLDY-ELNHDAFEI----WSTLAWWLPAVVDLRR-SKTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAP 633 (997)
T ss_dssp HHHSS-CCCTTHHHH----HHHHHHHHHHHSCGGG-CHHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSC
T ss_pred HHHhc-cCCchhHHH----HHHHHHHHhcCCChhh-hHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhccccc
Confidence 66663 234443333 3333333333322111 145667663211 111111111123333333322221122
Q ss_pred HhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHH--------hhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHH
Q 006253 256 PYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEI--------DILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLE 327 (653)
Q Consensus 256 ~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 327 (653)
. ...++..++ +.++...+|......+..+..... ...+...+. .+...++... ..+.+...++.+++
T Consensus 634 ~-~~~~l~~~~--l~h~y~~VRe~Ig~~L~~i~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~-~~~~~~~~i~~~f~ 708 (997)
T 1vsy_5 634 D-VGKLFDELV--FDHPYDQVRQAVAKLLTTLVQNQSNPSISDPTTLLEAERND-PDGLGLPLKS-VPEKVDAYIKKQFE 708 (997)
T ss_dssp C-CHHHHHHCC--SCCSCHHHHHHHHHHHHHHHHTSCCCCBSCHHHHHHHHHSC-SSSSCCCSSC-CCHHHHHHHHHHHH
T ss_pred c-HHHHHHHHH--hCCChHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHhhccc-cccccCcccc-CcchHHHHHHHHHH
Confidence 1 344444444 677778888877766666554321 000000000 0000011100 01111111222333
Q ss_pred HhhhccCCccC----CCccccHhhhHHHHHHHHHhhcCCCc-------hhc-hHHHHHhhhcCcch-hhHHH-HHHHHHH
Q 006253 328 TLLKQEEDQDQ----DEGAWNIAMAGGTCLGLVARTVGDDI-------VPL-VMPFVEENITKQEW-RQREA-ATYAFGS 393 (653)
Q Consensus 328 ~l~~~~ed~~~----d~~~~~~r~~a~~~L~~l~~~~~~~~-------~~~-l~~~l~~~l~~~~~-~~r~a-al~~l~~ 393 (653)
.+.....+.++ ....-+....+...+.-+...++... ++. ++|.+..+....+- ..... +..++..
T Consensus 709 ~l~~~~~~~~~~~~~~~~~s~y~~~~kTvl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ 788 (997)
T 1vsy_5 709 IIKNLEDSVVGLNPQQFIKTDYFYRTSTIFYWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAG 788 (997)
T ss_dssp HHTGGGGTTSSCCSTTTTTSHHHHHHHHHHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHH
T ss_pred HHHHhhhcccccCccccchHHHHHHHHHHHHHHHHHhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHH
Confidence 33321111000 00000111123333334444443321 122 44444333333322 22333 4556666
Q ss_pred hhcCCCCCcchHHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc-h-
Q 006253 394 ILEGPSPEKLVPLVNIALNFMLTALMQ-DPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-V- 470 (653)
Q Consensus 394 i~~~~~~~~~~~~l~~l~~~ll~~l~~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~- 470 (653)
++...- -..+++.++..+.... + +++. .|.+++..+..+.-.--- .........+...++..|.| .
T Consensus 789 ls~~~~---~~~~~~~~l~~l~~~~-~~s~sW-~R~~~L~~lq~~~f~n~f------~l~~~~~~~i~~~v~~~L~D~q~ 857 (997)
T 1vsy_5 789 LGYMPI---RKNHVAAIVDYVCSSN-VALSSN-QTKLQLAFIQHFLSAELL------QLTEEEKNKILEFVVSNLYNEQF 857 (997)
T ss_dssp TSSSCC---CHHHHHHHHHHSSCTT-TTSCSS-SHHHHHHHHHHHHHHHTT------TSCTTHHHHTHHHHTTTTTCSSC
T ss_pred HhcCCC---CHHHHHHHHHHHHHHH-hcCCcH-HHHHHHHHHHHHHHHHHH------HcCHHHHHHHHHHHHHHhcCCcc
Confidence 665431 2345666666665555 4 5778 999998887665532110 02334446888888898987 7
Q ss_pred hhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccc---c-------ccchhchHHHHHHHHHHHHHhccc
Q 006253 471 PNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHR---E-------DAGESRLRTAAYETLNEVVRCSTD 540 (653)
Q Consensus 471 ~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~---~-------~~~~~~~~~~~~~~l~~l~~~~~~ 540 (653)
.+||+.|+.+|..+++..+ .......++..+.+.+.. . .. ....|..++-.|+.++.+.|-
T Consensus 858 ~EVRe~Aa~tLsgll~c~~--------~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~-~~~~rH~aVLgL~AlV~a~Py 928 (997)
T 1vsy_5 858 VEVRVRAASILSDIVHNWK--------EEQPLLSLIERFAKGLDVNKYTSKERQKLSK-TDIKIHGNVLGLGAIISAFPY 928 (997)
T ss_dssp HHHHHHHHHHHHHHHHSCC--------SHHHHHHHHHHHTTSSTTTSSCHHHHHHHHH-HCHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHHHHHcCC--------chhhHHHHHHHHHHHHhhcccccccccccch-HHHHHHHHHHHHHHHHhhCCC
Confidence 8999999999999987531 112233455555444422 0 00 113456888899999999987
Q ss_pred cc--HHHHHHHHHH
Q 006253 541 ET--APMVMQLVPL 552 (653)
Q Consensus 541 ~~--~~~~~~l~~~ 552 (653)
.+ .+++.+++..
T Consensus 929 ~vP~P~w~P~~l~~ 942 (997)
T 1vsy_5 929 VFPLPPWIPKNLSN 942 (997)
T ss_dssp CSSCCTHHHHHHHH
T ss_pred CCCCCcccHHHHHH
Confidence 65 4566554433
No 105
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.16 E-value=0.12 Score=53.62 Aligned_cols=318 Identities=9% Similarity=0.074 Sum_probs=178.6
Q ss_pred HHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCC--ChhHHHHHHHHHHHHHhhhcc-
Q 006253 89 VKAQIKSFILKTLSSPA-HDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQL--PPHTKQATLETLGYICEEVSS- 164 (653)
Q Consensus 89 ~~~~i~~~ll~~l~~~~-~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~--~~~~~~~~l~~l~~l~~~~~~- 164 (653)
...+..+.|...+.+.. ..=|+.|...+..+++. |+...-..=++.|++.++.+ |.+....++.+|..+...-+.
T Consensus 18 s~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~-y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~ 96 (651)
T 3grl_A 18 TEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKK-YRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEE 96 (651)
T ss_dssp CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT-TTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC---
T ss_pred ChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHH-hHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcc
Confidence 33445566666666554 56799999999999764 23211122256777777654 677778888888655432211
Q ss_pred c----------ccchhh------HhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhH-HHHHHHHHHhh
Q 006253 165 D----------AVEQDH------VNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDME-RDYIMRVVCEA 227 (653)
Q Consensus 165 ~----------~~~~~~------~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-~~~il~~l~~~ 227 (653)
+ .++... -..-++.++..+. ..+..+|..++++|..++..-++....-.. ...-++.|...
T Consensus 97 ~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~--~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~l 174 (651)
T 3grl_A 97 EVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLE--EFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDL 174 (651)
T ss_dssp -----------CHHHHHHHHHHHSTHHHHHHHHHTT--CCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGG
T ss_pred cccccccccchHHHHHHHHHHHcCCccHHHHHHHhc--CccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHH
Confidence 0 010001 1345677888887 788999999999999988643221110000 01245677888
Q ss_pred hcCCcHHHHHHHHHHHHHHHHHhHHhhHHh--HHHHHHHHHHHhhcCC----hhHHHHHHHhHHHhhHHHHhhhhhcCCC
Q 006253 228 TLSPEVKIRQAAFECLVAISSTYYEKLAPY--IQDIFNITAKAVREDE----EPVALQAIEFWSSVCDEEIDILEEYGGD 301 (653)
Q Consensus 228 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--l~~l~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 301 (653)
+.++.+.+|..++-.|..+.....+. .+. .+..++.++..+..+. ..+...|+.++..+....+.
T Consensus 175 L~d~rE~iRneallLL~~Lt~~n~~i-QklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~s-------- 245 (651)
T 3grl_A 175 LADSREVIRNDGVLLLQALTRSNGAI-QKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNS-------- 245 (651)
T ss_dssp GGCSSHHHHHHHHHHHHHHHTTCHHH-HHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHH--------
T ss_pred HhCchHHHHHHHHHHHHHHhcCCHHH-HHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHH--------
Confidence 88889999999999999999876542 222 2245666666665433 35667788877777753210
Q ss_pred CCCCCCCchhhHHHh--hhhhhHHHHHHHhhhccCCccCCCccccHhhhH-----HHHHHHHHhhcCCCc----------
Q 006253 302 FSGDSDIPCFYFIKH--ALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAG-----GTCLGLVARTVGDDI---------- 364 (653)
Q Consensus 302 ~~~~~~~~~~~~~~~--~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a-----~~~L~~l~~~~~~~~---------- 364 (653)
..+++.. .++++.+. +.. + ++...|+.++.+ ..++..+... +...
T Consensus 246 --------NQ~~FrEt~~i~~L~~L----L~~-~----~~~~~W~~Qk~~N~~~~L~iIrlLv~~-~~~~~~t~~nQ~~~ 307 (651)
T 3grl_A 246 --------NQNFFKEGSYIQRMKPW----FEV-G----DENSGWSAQKVTNLHLMLQLVRVLVSP-NNPPGATSSCQKAM 307 (651)
T ss_dssp --------HHHHHHHTTCGGGGGGG----GCC-C----SCSSCCCHHHHHHHHHHHHHHHHHTCT-TSCHHHHHHHHHHH
T ss_pred --------HHHHHHHcCCHHHHHHH----hCC-C----ccccccHHHHHHHHHHHHHHHHHHhCC-CCCCCCCHHHHHHH
Confidence 1122221 23333332 221 1 123468755422 2222222221 1110
Q ss_pred h-hchHHHHHhhhcCc--chhhHHHHHHHHHHhhcCCCCCcchHHH-----------HHHHHHHHHHhcCC-CchHHHHH
Q 006253 365 V-PLVMPFVEENITKQ--EWRQREAATYAFGSILEGPSPEKLVPLV-----------NIALNFMLTALMQD-PNNHVKDT 429 (653)
Q Consensus 365 ~-~~l~~~l~~~l~~~--~~~~r~aal~~l~~i~~~~~~~~~~~~l-----------~~l~~~ll~~l~~d-~~~~vr~~ 429 (653)
. .-+++.+.+.+.++ ...+|..|+.+++.+..+.. . ...++ +.++..++..+ ++ ....+|.+
T Consensus 308 ~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~-~-~Q~~fa~~~vp~~~~~p~li~lL~~~~-~~~~~~~lR~A 384 (651)
T 3grl_A 308 FQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQ-V-NQDYFASVNAPSNPPRPAIVVLLMSMV-NERQPFVLRCA 384 (651)
T ss_dssp HHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCH-H-HHHHHHHCEESSSSCEEHHHHHHHHHT-CTTSCHHHHHH
T ss_pred HHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCH-H-HHHHHhhccCCCCCCcChHHHHHHHHh-cccccHHHHHH
Confidence 0 11233333444433 35788889999999887641 1 11111 22344444555 44 44788999
Q ss_pred HHHHHHHHHh
Q 006253 430 TAWTLGRMFE 439 (653)
Q Consensus 430 a~~~l~~~~~ 439 (653)
|+.|+..|..
T Consensus 385 a~~cl~ay~~ 394 (651)
T 3grl_A 385 VLYCFQCFLY 394 (651)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998874
No 106
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=97.06 E-value=0.27 Score=48.67 Aligned_cols=238 Identities=13% Similarity=0.143 Sum_probs=131.4
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHhhCcch----HHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhh
Q 006253 6 TQILLNAQSVDGTVRKQAEESLKQYQEQNLPG----FLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQR 81 (653)
Q Consensus 6 ~~ll~~~~s~d~~~r~~A~~~L~~~~~~~~~~----~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~ 81 (653)
..+|.+. .++....+-|-+.+-+|.+. +|+ .+..++.+.. +.+.++|..|..-|-.+.+.
T Consensus 32 ~~Il~~~-kg~~k~K~LaaQ~I~kffk~-FP~l~~~Ai~a~lDLcE--Ded~~IR~qaik~Lp~~ck~------------ 95 (507)
T 3u0r_A 32 QVILDGV-KGGTKEKRLAAQFIPKFFKH-FPELADSAINAQLDLCE--DEDVSIRRQAIKELPQFATG------------ 95 (507)
T ss_dssp HHHHHGG-GSCHHHHHHHHHHHHHHGGG-CGGGHHHHHHHHHHHHT--CSSHHHHHHHHHHGGGGCCT------------
T ss_pred HHHHHhc-CCCHHHHHHHHHHHHHHHhh-ChhhHHHHHHHHHHHHh--cccHHHHHHHHHhhHHHhhh------------
Confidence 3344433 34567777777888777664 343 3444444444 35788888887666665541
Q ss_pred ccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhh
Q 006253 82 WLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEE 161 (653)
Q Consensus 82 ~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~ 161 (653)
+....+-+.|.++|.++++.-+..+-.++..+.+.+ |. ..+..++..+.++++.+|+.++..|..=+..
T Consensus 96 ------~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~D-pk----~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~ 164 (507)
T 3u0r_A 96 ------ENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMD-AK----GTLGGLFSQILQGEDIVRERAIKFLSTKLKT 164 (507)
T ss_dssp ------TCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-HH----HHHHHHHHHHHHSCHHHHHHHHHHHHHHGGG
T ss_pred ------hhhhhHHHHHHHHHhccchHHHHHHHHHHHHHHhcC-hH----HHHHHHHHHHcccchHHHHHHHHHHHHHHhh
Confidence 223457778888888888777777888888888776 42 3334444444445778888888888654444
Q ss_pred hcccccchh--------------------------------------hHhHHHHHHHhccc--CC--CCCHHHHHHHHHH
Q 006253 162 VSSDAVEQD--------------------------------------HVNKILTAVVQGMN--AS--ESNNDVRLAATRA 199 (653)
Q Consensus 162 ~~~~~~~~~--------------------------------------~~~~l~~~l~~~l~--~~--~~~~~vr~~a~~~ 199 (653)
+.++.++.+ ....++..+..... .+ ..+++.-..-+.|
T Consensus 165 l~~~~l~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C 244 (507)
T 3u0r_A 165 LPDEVLTKEVEELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQC 244 (507)
T ss_dssp SCTTTSCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHH
T ss_pred cchhhccHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHH
Confidence 433333111 11223333332211 00 1345555556666
Q ss_pred HHHHHHhhhhhcCChhHHHHHHHHHHhhhcC-----CcHHHHHHHHHHHHHHHHHhH--HhhHHhHHHHHHHHHHHhh
Q 006253 200 LYNALGFAQANFSNDMERDYIMRVVCEATLS-----PEVKIRQAAFECLVAISSTYY--EKLAPYIQDIFNITAKAVR 270 (653)
Q Consensus 200 l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~-----~~~~~~~~~~~~l~~l~~~~~--~~~~~~l~~l~~~~~~~~~ 270 (653)
+..-+.++........+...+...++..++. +.++.+-..++.+..++..++ +.....++.++..++..+.
T Consensus 245 ~~~ALP~FS~~v~StkFv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L~~ymP 322 (507)
T 3u0r_A 245 TRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKLLEYMP 322 (507)
T ss_dssp HHHHGGGCBTTBCCHHHHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhccCCChHHHHHHHHHhhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHCC
Confidence 6666666554444434444444444443332 122356667777777776655 3334455566655555443
No 107
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=96.99 E-value=0.011 Score=53.81 Aligned_cols=189 Identities=11% Similarity=0.051 Sum_probs=116.3
Q ss_pred HHHHHHhcCCCCh--HHHHHHHHHHHHHHhhhcCCCC---CchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccc
Q 006253 94 KSFILKTLSSPAH--DARSTASQVVAKVAGIELPHKQ---WPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVE 168 (653)
Q Consensus 94 ~~~ll~~l~~~~~--~vr~~~~~~l~~ia~~~~~~~~---~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~ 168 (653)
.+.+++.|.++++ .++..++.++..++....+... -...+|.|++.+.++++.+++.|..+|..++... ++.-.
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~-~~nk~ 88 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFED-NDNKL 88 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC-HHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC-HHHHH
Confidence 3567889998876 8888888999988865422100 1367899999999999999999999999998643 21100
Q ss_pred hhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhc----------------CCc
Q 006253 169 QDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATL----------------SPE 232 (653)
Q Consensus 169 ~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~----------------~~~ 232 (653)
.-.-..-+|.+++.+.. .++.++++.|..+|.++...-.... .....-++.|...+. ..+
T Consensus 89 ~I~~~GaI~~Lv~lL~~-~~~~~~~e~a~~aL~nLS~~~~~k~---~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~ 164 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQ-TRDLETKKQITGLLWNLSSNDKLKN---LMITEALLTLTENIIIPFSGWPEGDYPKANGLLD 164 (233)
T ss_dssp HHHHTTHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHTSGGGHH---HHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCC
T ss_pred HHHHcCCHHHHHHHHcc-CCCHHHHHHHHHHHHHHHcChhhHH---HHHhccHHHHHHHHhccccCCcccccccccccch
Confidence 11123467788888863 3578999999989888764321100 011122344433221 136
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhHHhH---HHHHHHHHHH----hhc--CChhHHHHHHHhHHHhh
Q 006253 233 VKIRQAAFECLVAISSTYYEKLAPYI---QDIFNITAKA----VRE--DEEPVALQAIEFWSSVC 288 (653)
Q Consensus 233 ~~~~~~~~~~l~~l~~~~~~~~~~~l---~~l~~~~~~~----~~~--~~~~~~~~a~~~~~~~~ 288 (653)
++++.++..+|..+....++. +..+ +.+++.++.. +.+ .+...++.|+..+..++
T Consensus 165 ~~v~~na~~~L~nLss~~~~~-R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs 228 (233)
T 3tt9_A 165 FDIFYNVTGCLRNMSSAGADG-RKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLS 228 (233)
T ss_dssp HHHHHHHHHHHHHHTTSCHHH-HHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcCCHHH-HHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHH
Confidence 789999999999987643221 2222 1244444333 322 34456666766655543
No 108
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.72 E-value=0.17 Score=45.10 Aligned_cols=169 Identities=12% Similarity=0.100 Sum_probs=109.9
Q ss_pred ChhHHHHHHHHhcCCC---hHHHHHHHHHHHHHHhhCcchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHH
Q 006253 1 MSAEVTQILLNAQSVD---GTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFE 77 (653)
Q Consensus 1 m~~~l~~ll~~~~s~d---~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~ 77 (653)
|++=+.++++.+..-. .++-..|...+..+. .+.+..+..-|.+ +...++|..|+-+|... ..
T Consensus 35 ~~~~~~~~~~~~~~~~~gf~~~~~~a~~~~~~~~----~~~~~~la~~L~~-~~~deVR~~Av~lLg~~-~~-------- 100 (240)
T 3l9t_A 35 MKQYVARLEKDFSLIEHGFKEEEQRALTDYKSND----GEYIKKLAFLAYQ-SDVYQVRMYAVFLFGYL-SK-------- 100 (240)
T ss_dssp HHHHHHHHHHHHTC-----CHHHHHHHHHHHHSC----HHHHHHHHHHHHT-CSSHHHHHHHHHHHHHT-TT--------
T ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhCC----HHHHHHHHHHHHh-CcchHHHHHHHHHHHhc-cC--------
Confidence 3433445555554421 244444444433332 3555566766766 34679999999887764 21
Q ss_pred hhhhccCCChHHHHHHHHHHHH-hcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHH
Q 006253 78 LVQRWLSLDSSVKAQIKSFILK-TLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLG 156 (653)
Q Consensus 78 ~~~~~~~l~~~~~~~i~~~ll~-~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~ 156 (653)
.+ .+.+.+.. .-.+++..||-.++.+++.++....|+ ..++.+...+.++++.+|..+...+.
T Consensus 101 --------~~----~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe----~~l~~~~~W~~d~n~~VRR~Ase~~r 164 (240)
T 3l9t_A 101 --------DK----EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK----KALPIIDEWLKSSNLHTRRAATEGLR 164 (240)
T ss_dssp --------SH----HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT----TTHHHHHHHHHCSSHHHHHHHHHHTC
T ss_pred --------cH----HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH----HHHHHHHHHhcCCCHHHHHHHHHhhH
Confidence 11 23334444 344667899999999999999744352 37788889999999999999998875
Q ss_pred HHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHH
Q 006253 157 YICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALG 205 (653)
Q Consensus 157 ~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~ 205 (653)
-.+.. +. + ......+++.+..... |++.-||++.-..|..+..
T Consensus 165 pW~~~--~~-~-k~dp~~ll~iL~~L~~--D~s~yVrKSVan~LrD~SK 207 (240)
T 3l9t_A 165 IWTNR--PY-F-KENPNEAIRRIADLKE--DVSEYVRKSVGNALRDISK 207 (240)
T ss_dssp SGGGS--TT-T-TTCHHHHHHHHHTTTT--CSCHHHHHHHHHHHHHHHT
T ss_pred HHhcc--ch-h-hcCHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHhh
Confidence 43332 22 2 3445667877777766 8999999999999888554
No 109
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.66 E-value=0.0003 Score=64.57 Aligned_cols=186 Identities=17% Similarity=0.161 Sum_probs=118.1
Q ss_pred HhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHH
Q 006253 99 KTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTA 178 (653)
Q Consensus 99 ~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~ 178 (653)
..+.++++.+|..++..+ | ++ .+...+.++++.+|..+...+ +. +.
T Consensus 57 ~ll~d~~~~VR~~AA~~l--------~----~~---~l~~L~~D~~~~VR~~aA~~L--------~~-----------~~ 102 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYS--------P----VE---ALTPLIRDSDEVVRRAVAYRL--------PR-----------EQ 102 (244)
T ss_dssp GGTTCSSHHHHHHHHTTS--------C----GG---GGGGGTTCSSHHHHHHHHTTS--------CS-----------GG
T ss_pred HHhcCCCHHHHHHHHHhC--------C----HH---HHHHHccCcCHHHHHHHHHHC--------CH-----------HH
Confidence 345788899999988843 2 22 256667889999998887542 11 12
Q ss_pred HHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhH
Q 006253 179 VVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYI 258 (653)
Q Consensus 179 l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l 258 (653)
+...++ |+++.||..+...+ + . +.+..+++++++.+|..+...+ .+
T Consensus 103 L~~ll~--D~d~~VR~~aA~~l-------~----~--------~~L~~L~~D~d~~VR~~aA~~l------~~------- 148 (244)
T 1lrv_A 103 LSALMF--DEDREVRITVADRL-------P----L--------EQLEQMAADRDYLVRAYVVQRI------PP------- 148 (244)
T ss_dssp GGGTTT--CSCHHHHHHHHHHS-------C----T--------GGGGGGTTCSSHHHHHHHHHHS------CG-------
T ss_pred HHHHHc--CCCHHHHHHHHHhC-------C----H--------HHHHHHHcCCCHHHHHHHHHhc------CH-------
Confidence 344556 89999998887732 1 0 1234556789999998887632 11
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccC
Q 006253 259 QDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQ 338 (653)
Q Consensus 259 ~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~ 338 (653)
+.+....++.++.||..+... +.. .++. .+. .
T Consensus 149 ----~~l~~l~~D~d~~VR~~aa~~---l~~------------------------------~ll~----~ll---~---- 180 (244)
T 1lrv_A 149 ----GRLFRFMRDEDRQVRKLVAKR---LPE------------------------------ESLG----LMT---Q---- 180 (244)
T ss_dssp ----GGGGGTTTCSCHHHHHHHHHH---SCG------------------------------GGGG----GST---T----
T ss_pred ----HHHHHHHcCCCHHHHHHHHHc---CCH------------------------------HHHH----HHH---c----
Confidence 112234567888888877642 110 0111 111 1
Q ss_pred CCccccHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHh
Q 006253 339 DEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTAL 418 (653)
Q Consensus 339 d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l 418 (653)
|.+|.+|..+...+ + .+.+...+.|++|.+|.++...++ ...+..|
T Consensus 181 -D~d~~VR~aaa~~l-------~-------~~~L~~Ll~D~d~~VR~~aa~~l~-------------------~~~L~~L 226 (244)
T 1lrv_A 181 -DPEPEVRRIVASRL-------R-------GDDLLELLHDPDWTVRLAAVEHAS-------------------LEALREL 226 (244)
T ss_dssp -CSSHHHHHHHHHHC-------C-------GGGGGGGGGCSSHHHHHHHHHHSC-------------------HHHHHHC
T ss_pred -CCCHHHHHHHHHhC-------C-------HHHHHHHHcCCCHHHHHHHHHcCC-------------------HHHHHHc
Confidence 24489998887652 1 134556688999999999888754 1234568
Q ss_pred cCCCchHHHHHHHHHHH
Q 006253 419 MQDPNNHVKDTTAWTLG 435 (653)
Q Consensus 419 ~~d~~~~vr~~a~~~l~ 435 (653)
+|+++.||.++...||
T Consensus 227 -~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 227 -DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp -CCCCHHHHHHHHCCC-
T ss_pred -cCCCHHHHHHHHHHhC
Confidence 9999999999976654
No 110
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=96.61 E-value=0.17 Score=49.34 Aligned_cols=228 Identities=12% Similarity=0.067 Sum_probs=140.6
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhhC--cchHHHH-----HHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHH
Q 006253 5 VTQILLNAQSVDGTVRKQAEESLKQYQEQN--LPGFLLS-----LAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFE 77 (653)
Q Consensus 5 l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~--~~~~~~~-----l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~ 77 (653)
+.+++..+.|+|+..|......|..+..+- .-.|+.. +...+-. +..-+----.+-+++..++..
T Consensus 131 i~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~innif~~fiye-~e~~~GIaeLLeilgsIinGf------- 202 (403)
T 3fga_B 131 VLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYE-TEHHNGIAELLEILGSIINGF------- 202 (403)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT-TCCCTTHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcC-cccCCCHHHHHHHHHHHHccc-------
Confidence 567888889999999998888887755441 0122221 1111111 100000001223444444421
Q ss_pred hhhhccCCChHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHH
Q 006253 78 LVQRWLSLDSSVKAQIKSFILKTLSSPA-HDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLG 156 (653)
Q Consensus 78 ~~~~~~~l~~~~~~~i~~~ll~~l~~~~-~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~ 156 (653)
-..+-++.+..+.+.|+...+... ...-.+++.|+..+...+ | ..-..++..++...--.+......-+.-+.
T Consensus 203 ----a~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKD-p-~L~~~vi~~LLk~WP~tns~KevlFL~Ele 276 (403)
T 3fga_B 203 ----ALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKD-S-TLTEPVVMALLKYWPKTHSPKEVMFLNELE 276 (403)
T ss_dssp ----CSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHC-G-GGHHHHHHHHHHTCCSSCHHHHHHHHHHHH
T ss_pred ----CCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhC-c-hhHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Confidence 023556777777788888877765 566789999999999887 4 234456666666665566666666777888
Q ss_pred HHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHH--HHHhhhhhcCChhHHHHHHHHHHhh----h-c
Q 006253 157 YICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYN--ALGFAQANFSNDMERDYIMRVVCEA----T-L 229 (653)
Q Consensus 157 ~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~--~~~~~~~~~~~~~~~~~il~~l~~~----~-~ 229 (653)
.+++..++..+ +.....++..+..+++ .++..|-..|+..+.+ ++..+.+ +...++|.++.. . .
T Consensus 277 ~iLe~~~~~~f-~~i~~~lf~~la~ci~--S~hfqVAErAL~~wnNe~i~~li~~------n~~~IlPii~p~L~~~~~~ 347 (403)
T 3fga_B 277 EILDVIEPSEF-VKIMEPLFRQLAKCVS--SPHFQVAERALYYWNNEYIMSLISD------NAAKILPIMFPSLYRNSKT 347 (403)
T ss_dssp HHHTTCCHHHH-HHHHHHHHHHHHHHHT--CSCHHHHHHHHGGGGCHHHHHHHHT------THHHHHHHHHHHHHHTTSC
T ss_pred HHHHhCCHHHH-HHHHHHHHHHHHHHHC--CCCHHHHHHHHHHhccHHHHHHHHH------hHHHHHHHHHHHHHHHHHH
Confidence 88887766656 5667778888888888 5788888888765432 1111111 123455554433 2 3
Q ss_pred CCcHHHHHHHHHHHHHHHHHhHHhhH
Q 006253 230 SPEVKIRQAAFECLVAISSTYYEKLA 255 (653)
Q Consensus 230 ~~~~~~~~~~~~~l~~l~~~~~~~~~ 255 (653)
+-+..++..++.++..+.+..+..+.
T Consensus 348 HWn~~v~~l~~~vlk~l~e~d~~lF~ 373 (403)
T 3fga_B 348 HWNKTIHGLIYNALKLFMEMNQKLFD 373 (403)
T ss_dssp CSCHHHHHHHHHHHHHHHTTSCCCCC
T ss_pred ccCHHHHHHHHHHHHHHHHhCHHHHH
Confidence 46788888888888887777665544
No 111
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=96.58 E-value=0.23 Score=49.33 Aligned_cols=228 Identities=12% Similarity=0.064 Sum_probs=141.8
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhh--CcchHHHHH-----HHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHH
Q 006253 5 VTQILLNAQSVDGTVRKQAEESLKQYQEQ--NLPGFLLSL-----AGELVNDEKPVESRKLAGLILKNALDAKEQHRKFE 77 (653)
Q Consensus 5 l~~ll~~~~s~d~~~r~~A~~~L~~~~~~--~~~~~~~~l-----~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~ 77 (653)
+.+++..+.|+|+..|......|..+..+ +.-.|+... ...+-. ...-+----.+-+++.+++..
T Consensus 164 i~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fi~e-~e~~nGIaeLLeilgSIinGf------- 235 (449)
T 2npp_B 164 VLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYE-TEHHNGIAELLEILGSIINGF------- 235 (449)
T ss_dssp HHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHHT-CSCCSCHHHHHHHHHHHHSSC-------
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCCCCCHHHHHHHHHHHHhcc-------
Confidence 56788888889999998888888766554 111222211 111111 111111111233445555431
Q ss_pred hhhhccCCChHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHH
Q 006253 78 LVQRWLSLDSSVKAQIKSFILKTLSSPA-HDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLG 156 (653)
Q Consensus 78 ~~~~~~~l~~~~~~~i~~~ll~~l~~~~-~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~ 156 (653)
-..+-++.+..+.+.|+.+.+... ...-.+++.|+..+...+ | ..-..++..|+...--.+......-+.-+.
T Consensus 236 ----a~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKD-p-~L~~~vi~~LLk~WP~tns~KevlFL~ele 309 (449)
T 2npp_B 236 ----ALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKD-S-TLTEPVVMALLKYWPKTHSPKEVMFLNELE 309 (449)
T ss_dssp ----CSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHC-G-GGHHHHHHHHHHTCCSSCHHHHHHHHHHHH
T ss_pred ----CCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcC-c-HhHHHHHHHHHHhCCCCCchHHHHHHHHHH
Confidence 023557777777788888877765 566779999999999887 3 133456666666655556666666777788
Q ss_pred HHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHH--HHhhhhhcCChhHHHHHHHHHHhhh-----c
Q 006253 157 YICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNA--LGFAQANFSNDMERDYIMRVVCEAT-----L 229 (653)
Q Consensus 157 ~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~--~~~~~~~~~~~~~~~~il~~l~~~~-----~ 229 (653)
.+++..++..+ +..+..++..+..+++ .++..|-..|+..+.+= +..+.+ +...++|.++..+ .
T Consensus 310 eile~~~~~ef-~~i~~~lF~~la~ci~--S~hfqVAErAL~~w~N~~i~~li~~------n~~~IlPii~p~L~~~s~~ 380 (449)
T 2npp_B 310 EILDVIEPSEF-VKIMEPLFRQLAKCVS--SPHFQVAERALYYWNNEYIMSLISD------NAAKILPIMFPSLYRNSKT 380 (449)
T ss_dssp HHHTTCCHHHH-HHHHHHHHHHHHHHHT--CSCHHHHHHHHGGGGCHHHHHHHHT------THHHHHHHHHHHHTSCTTC
T ss_pred HHHHhCCHHHH-HHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHCCHHHHHHHHh------chhhhHHhhHHHHHHHHHH
Confidence 88877766666 5667778888889998 68888888887665321 111111 1245666665543 3
Q ss_pred CCcHHHHHHHHHHHHHHHHHhHHhhH
Q 006253 230 SPEVKIRQAAFECLVAISSTYYEKLA 255 (653)
Q Consensus 230 ~~~~~~~~~~~~~l~~l~~~~~~~~~ 255 (653)
+.+..++..+..++..+.+..+..+.
T Consensus 381 HWn~~V~~la~~vlk~l~e~d~~lf~ 406 (449)
T 2npp_B 381 HWNKTIHGLIYNALKLFMEMNQKLFD 406 (449)
T ss_dssp CSSTTHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHCHHHHH
Confidence 45678888888888887777665544
No 112
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=96.38 E-value=0.0083 Score=64.92 Aligned_cols=71 Identities=14% Similarity=0.184 Sum_probs=52.2
Q ss_pred chHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHH-HHHHHHH-HHHhcCCCchHHHHHHHHHHHHHHhhh
Q 006253 367 LVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLV-NIALNFM-LTALMQDPNNHVKDTTAWTLGRMFEFL 441 (653)
Q Consensus 367 ~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l-~~l~~~l-l~~l~~d~~~~vr~~a~~~l~~~~~~~ 441 (653)
.+.|++.. ++++++..|..|+.+++.++++. ....-.+ ..++..+ ...+ .|++..||.+|+++|++++...
T Consensus 35 ~i~Pll~~-L~S~~~~~r~~A~~al~~l~~~~--~~~~l~~~~~~v~~ll~~lL-~D~~~~Vr~~A~gaLrnL~~~~ 107 (684)
T 4gmo_A 35 KILPVLKD-LKSPDAKSRTTAAGAIANIVQDA--KCRKLLLREQVVHIVLTETL-TDNNIDSRAAGWEILKVLAQEE 107 (684)
T ss_dssp TTHHHHHH-HSSSCCSHHHHHHHHHHHHTTSH--HHHHHHHHTTHHHHHHHTTT-TCSCHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHH-cCCCCHHHHHHHHHHHHHHHcCc--HHHHHHHHcCCHHHHHHHHc-CCCCHHHHHHHHHHHHHHHhhc
Confidence 45666644 78999999999999999999753 2222222 2345544 4567 9999999999999999998654
No 113
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=96.33 E-value=0.56 Score=50.95 Aligned_cols=122 Identities=11% Similarity=0.179 Sum_probs=88.3
Q ss_pred cCCChHHHHHHHHHH----HHhcCCCChHHHHHHHHHHHHHHhhhcC---CCCCchHHHHHHHhhcC---CChhHHHHHH
Q 006253 83 LSLDSSVKAQIKSFI----LKTLSSPAHDARSTASQVVAKVAGIELP---HKQWPELIGALLSNIHQ---LPPHTKQATL 152 (653)
Q Consensus 83 ~~l~~~~~~~i~~~l----l~~l~~~~~~vr~~~~~~l~~ia~~~~~---~~~~~~l~~~l~~~l~~---~~~~~~~~~l 152 (653)
..++++.+..+.+.+ +.++-+.+..+...+..++..+|... | .-..|.+++.+...+.+ ..+....+++
T Consensus 326 ~~Lt~~~~~~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~-P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL 404 (799)
T 1vsy_4 326 ICLTSFCHEEIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELD-PSNAYLIYDKILIDLYDTLADQFINSRHRIISSL 404 (799)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTC-CTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcC-CCccceehHHHHHHHHHHhccccccchhHHHHHH
Confidence 347777776555544 45667888999999999999999876 5 33456777777777776 4667778889
Q ss_pred HHHHHHHhhhc-ccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhh
Q 006253 153 ETLGYICEEVS-SDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQ 208 (653)
Q Consensus 153 ~~l~~l~~~~~-~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 208 (653)
.++..++..+- .... +.|+..++..++.++.. .++.--..+++.+..+..+++
T Consensus 405 ~~l~~~~r~lv~~~~y-r~hl~~lL~l~LpgID~--ND~~KT~~tl~fi~~i~s~ip 458 (799)
T 1vsy_4 405 KQFTRVIRFIVMDKLY-RVHITNVLSMLVSKLDM--NDTNLTSNLINGIVSIAAFIP 458 (799)
T ss_dssp HHHHTTHHHHTTSTTG-GGHHHHHHHHHHHTCCS--SCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHhcCccc-HHHHHHHHHHHhccCCc--ccHHHHHHHHHHHHHHHHhcc
Confidence 99998888762 2234 67888899999999873 445544567888888777664
No 114
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=95.95 E-value=2.4 Score=45.99 Aligned_cols=342 Identities=8% Similarity=0.035 Sum_probs=180.7
Q ss_pred cCCChHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHhh--------------hcCCCCCchHHHHHHHhhcCCChhH
Q 006253 83 LSLDSSVKAQIKSFILKTLSSPA-HDARSTASQVVAKVAGI--------------ELPHKQWPELIGALLSNIHQLPPHT 147 (653)
Q Consensus 83 ~~l~~~~~~~i~~~ll~~l~~~~-~~vr~~~~~~l~~ia~~--------------~~~~~~~~~l~~~l~~~l~~~~~~~ 147 (653)
..++.+.+..+...+.+.+..+. ...++..+.++..+.+. +.. -.|-.+...+...+-..+...
T Consensus 15 ~~~~~~~~~~Lv~l~Y~l~~~~g~~~~~~~~~~~l~~Ll~~~~~~~~~~~ll~~~dL~-LdWrPLy~~l~~~~~~~~~~~ 93 (799)
T 1vsy_4 15 FDFPVALRKSLATVYYYLSLVQGQKVYRQMHVDMFERLVSLDDDRTQFTELLQKQGLL-LDHQIMLNFLCEFLPYPDPDY 93 (799)
T ss_dssp SCCCHHHHHHHHHHHHHHHTCCSSCCCHHHHHHHHHHHSCSCBTTBCHHHHHHHTTCC-CCHHHHHHHHTTTSCCSSTTT
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCcccccchhhccccccce-eccHHHHHHHHHhCCCcCccc
Confidence 34788888888888888765543 22236677777776542 112 368888877766654332211
Q ss_pred -------HH--HHHHHHHHHHhhhcccccc---hhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChh
Q 006253 148 -------KQ--ATLETLGYICEEVSSDAVE---QDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDM 215 (653)
Q Consensus 148 -------~~--~~l~~l~~l~~~~~~~~~~---~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 215 (653)
++ ..+..+..++... ..+++ ......++.-+...+. ++ .+..+++-+..+++.....+.
T Consensus 94 ~~~~~~~~~~~~~~~~l~~l~~~a-r~fF~~~~~~~~~eil~e~~p~l~---p~-----s~~~~~~~l~~fLP~~~~~~~ 164 (799)
T 1vsy_4 94 ARYELSSKEDLQLFRLLLKHAHNA-KPFFDKSKESLLVDTMNFLLSSLA---PS-----TMMAVMPIVTSVVPYHYHIHS 164 (799)
T ss_dssp CCCCTTSTTTHHHHHHHHHHHHHT-STTSCTTCGGGHHHHHHHHGGGCS---TT-----THHHHHHHHHHHSCCCCCSSC
T ss_pred cccccchhhhHHHHHHHHHHHHHH-HHcCCCCCccHHHHHHHHHHHhcC---ch-----hHHHHHHHHHHHcCCCCCchh
Confidence 11 4567777777665 34454 3446777777776665 21 122333333234432222111
Q ss_pred HHHHHHHHHHhhhc--CCcHHHHHHHHHHHHHHHHHhH------------H--hhHHh-------HHHHHHHHHHHhhcC
Q 006253 216 ERDYIMRVVCEATL--SPEVKIRQAAFECLVAISSTYY------------E--KLAPY-------IQDIFNITAKAVRED 272 (653)
Q Consensus 216 ~~~~il~~l~~~~~--~~~~~~~~~~~~~l~~l~~~~~------------~--~~~~~-------l~~l~~~~~~~~~~~ 272 (653)
....+++.++.+-. +.+...-...+..+++++.... . .+.+| ++.++..+++.+...
T Consensus 165 ~~~~w~~~~f~lW~~~~~s~~wd~~~~~l~~rla~~~~~~~~~~~~~~~~g~idw~~~gift~~q~~~iFt~~lr~l~~~ 244 (799)
T 1vsy_4 165 KIIDYFPFCYSIWSSVSANVAIDTHMYDFVGSISKDVHNKILSSEHEKDVVGVEFGEFGIFTDDQMTFMFNRLQGHLRTD 244 (799)
T ss_dssp CSGGGHHHHHHHBTTBCSCHHHHHHHHHHHHHHHHHHHHHHSSSCSCTTCCCSCCCSSTTCCHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhHHHHHHHHHhcccCchHHHHHHHHHHHHHHHhhhhhcccccccCCCccchHhhCcccHHHHHHHHHHHHHhccCc
Confidence 11234555555443 2234444456677777777532 1 13456 777777777666521
Q ss_pred C--hhHHHH---------------HHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCC
Q 006253 273 E--EPVALQ---------------AIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEED 335 (653)
Q Consensus 273 ~--~~~~~~---------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed 335 (653)
. ...... +++.+..+... +..-+.+...|.+. ..+..++..++....+.+.+....
T Consensus 245 ~~~~~~~~~a~~IV~sl~~~~~~~~~~~L~~Li~~---iesy~HPSN~G~Wt----~~L~~Fl~~L~~~f~kR~~~Er~~ 317 (799)
T 1vsy_4 245 GQIHSYSRTVKPFVYAINGSKKDRFFEKLVSLAKA---IETFIHPSNNGFWT----KPNAKFVHAFIKSYHGRVKYEEDI 317 (799)
T ss_dssp CCCSSHHHHHHHHHTTCCTTSCTTTHHHHHHHHHH---HHHHHSTTCCSTTH----HHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCccchHHHHHHHHHHcCCCCchHHHHHHHHHHHH---HhcccCCCCCCccH----HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 0 001111 11111111111 00112233333321 111222222222222222211000
Q ss_pred -----ccC-----CC------------------ccccHhhhHHHHHHHHHhhcC---CCchhchHHHHHhhhcC---cch
Q 006253 336 -----QDQ-----DE------------------GAWNIAMAGGTCLGLVARTVG---DDIVPLVMPFVEENITK---QEW 381 (653)
Q Consensus 336 -----~~~-----d~------------------~~~~~r~~a~~~L~~l~~~~~---~~~~~~l~~~l~~~l~~---~~~ 381 (653)
+++ ++ .+-.++..+..+|..++...| +.++|.+++.+...+.. .+.
T Consensus 318 ~~~~~p~~~~Lt~~~~~~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~ 397 (799)
T 1vsy_4 318 CARGVTNGICLTSFCHEEIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSR 397 (799)
T ss_dssp TTTTCCCSSSCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCH
T ss_pred ccCCCchhhcCCHHHHHHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccch
Confidence 000 00 011344567889999999888 89999999998888776 445
Q ss_pred hhHHHHHHHHHHhhcCCC-CCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhc
Q 006253 382 RQREAATYAFGSILEGPS-PEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLH 442 (653)
Q Consensus 382 ~~r~aal~~l~~i~~~~~-~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~ 442 (653)
..--+++.++..++.... ......++..++..++.++ +-+++.--..++.++..++...+
T Consensus 398 Hrl~~aL~~l~~~~r~lv~~~~yr~hl~~lL~l~LpgI-D~ND~~KT~~tl~fi~~i~s~ip 458 (799)
T 1vsy_4 398 HRIISSLKQFTRVIRFIVMDKLYRVHITNVLSMLVSKL-DMNDTNLTSNLINGIVSIAAFIP 458 (799)
T ss_dssp HHHHHHHHHHHTTHHHHTTSTTGGGHHHHHHHHHHHTC-CSSCHHHHHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHhccC-CcccHHHHHHHHHHHHHHHHhcc
Confidence 555677888877654221 1234567888888888888 76777777778888888877654
No 115
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=95.79 E-value=0.21 Score=43.31 Aligned_cols=126 Identities=16% Similarity=0.210 Sum_probs=87.5
Q ss_pred HHHHHHHhhcC-CCchhchHHHHHhhhcC--cchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcC-C-CchH
Q 006253 351 TCLGLVARTVG-DDIVPLVMPFVEENITK--QEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQ-D-PNNH 425 (653)
Q Consensus 351 ~~L~~l~~~~~-~~~~~~l~~~l~~~l~~--~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~-d-~~~~ 425 (653)
.+|..+....| ...+|.++.++.+.+.. .++..-...+....++..+. .-.+++|+.+++|.++.++-. + ....
T Consensus 27 ~aL~sL~~D~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~-~l~lepYlH~LipsvLtCll~k~l~~~~ 105 (196)
T 4atg_A 27 IAIECLEKESGLQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNK-HVFIDPYLHQILPSLLTCVIGKSIVDDD 105 (196)
T ss_dssp HHHHHHHHCSSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCT-TCCCGGGHHHHHHHHHHHHHCTTCCCHH
T ss_pred HHHHHHhcCCChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCC-CCChHHHHHHHHHHHHHHHHhcccCHHH
Confidence 45566666655 56677777777665432 35655566677778888876 367899999999999988721 1 1127
Q ss_pred HHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc-h--hhHHHHHHHHHHHH
Q 006253 426 VKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-V--PNVAEKACGALYFL 484 (653)
Q Consensus 426 vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~--~~v~~~a~~al~~~ 484 (653)
+|+.|+..++.++..+... ....-+.++..+.+.+.| + ......|...+..+
T Consensus 106 LRd~AA~lL~~I~~~~~~~-------y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~l 160 (196)
T 4atg_A 106 VRKMSADIVKYIYDTYSRS-------YKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSIL 160 (196)
T ss_dssp HHHHHHHHHHHHHHHHTTT-------STTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcc-------CchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHh
Confidence 9999999999999998742 345667788888888775 2 34455555555544
No 116
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=95.76 E-value=1.2 Score=40.84 Aligned_cols=142 Identities=11% Similarity=0.077 Sum_probs=100.7
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHHHhh-C---cchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHH
Q 006253 2 SAEVTQILLNAQSVDGTVRKQAEESLKQYQEQ-N---LPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFE 77 (653)
Q Consensus 2 ~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~-~---~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~ 77 (653)
.+++..+|+.+.....+.+-..-.+.+++.-+ + .|+|+..++++.. +.+.++|.+.+-++......+
T Consensus 14 ~~~v~~lln~A~~~~~~~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~--~~~~~vrk~~~~Fi~e~~~~k------- 84 (257)
T 3gs3_A 14 RAKVVDWCNELVIASPSTKCELLAKVQETVLGSCAELAEEFLESVLSLAH--DSNMEVRKQVVAFVEQVCKVK------- 84 (257)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGG--CSCHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHhcc--CChHHHHHHHHHHHHHHHHHH-------
Confidence 45789999999875446666666666664333 3 3667777777543 368999999999988876432
Q ss_pred hhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhc------CC------CCCc---hHHHHHHHhhcC
Q 006253 78 LVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIEL------PH------KQWP---ELIGALLSNIHQ 142 (653)
Q Consensus 78 ~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~------~~------~~~~---~l~~~l~~~l~~ 142 (653)
++....+.+.|...+.++++.|.+.+.++.+.+....+ +. ..|. .+-..+++.+++
T Consensus 85 ---------~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s 155 (257)
T 3gs3_A 85 ---------VELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDN 155 (257)
T ss_dssp ---------GGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGS
T ss_pred ---------HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHcc
Confidence 23445567778888888888888888888887766421 21 2463 455667777888
Q ss_pred CChhHHHHHHHHHHHHHhh
Q 006253 143 LPPHTKQATLETLGYICEE 161 (653)
Q Consensus 143 ~~~~~~~~~l~~l~~l~~~ 161 (653)
.+..+|-.++..+..++-.
T Consensus 156 ~n~gvkl~~iKF~e~vIl~ 174 (257)
T 3gs3_A 156 ENDGIRTNAIKFLEGVVVL 174 (257)
T ss_dssp SCHHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHh
Confidence 8999999999999887754
No 117
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=95.43 E-value=1.5 Score=40.04 Aligned_cols=165 Identities=13% Similarity=0.153 Sum_probs=111.4
Q ss_pred hHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhh----
Q 006253 87 SSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEV---- 162 (653)
Q Consensus 87 ~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~---- 162 (653)
++...++.+.+++.-.+++..+|+..+..+...+... + ..-+..++.|...+.++++.+.+.++.+...+....
T Consensus 48 p~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k-~-~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i 125 (257)
T 3gs3_A 48 AELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK-V-ELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYL 125 (257)
T ss_dssp GGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC-G-GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466678888888777778899999999999998765 3 256788888888899999999999988888775543
Q ss_pred --cccc---cc--hhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhh----------cCC-----------h
Q 006253 163 --SSDA---VE--QDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQAN----------FSN-----------D 214 (653)
Q Consensus 163 --~~~~---~~--~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~----------~~~-----------~ 214 (653)
.+.. .+ -..+..+-..+++.+. ..+..+|..++|.+..++...... +.- .
T Consensus 126 ~~~~~~~~~~~~~W~~m~~lK~~Il~~~~--s~n~gvkl~~iKF~e~vIl~qT~~~~~~~~~~~d~SL~~Vp~~Hp~l~~ 203 (257)
T 3gs3_A 126 CSLMEPGDSAEQAWNILSLIKAQILDMID--NENDGIRTNAIKFLEGVVVLQSFADEDSLKRDGDFSLADVPDHCTLFRR 203 (257)
T ss_dssp TTSSSCCHHHHHHHHHHHHHHHHHHHGGG--SSCHHHHHHHHHHHHHHHHHTSCCCTTSCCCTTCCCGGGSCSSCCSSCH
T ss_pred hcCCCCcchHHHHHHHHHHHHHHHHHHHc--cCCcchHHHHHHHHHHHHHhhcCCCcccCCCCCCCCHHHCCCCCCcCCH
Confidence 0110 00 1234445555666666 578999999999999988533210 000 0
Q ss_pred ----hHHHHHHHHHHhhhcCC--cHHHHHHHHHHHHHHHHHhHHhhH
Q 006253 215 ----MERDYIMRVVCEATLSP--EVKIRQAAFECLVAISSTYYEKLA 255 (653)
Q Consensus 215 ----~~~~~il~~l~~~~~~~--~~~~~~~~~~~l~~l~~~~~~~~~ 255 (653)
..-..++..++..+..+ +.-...+++.+|..+++..|.+..
T Consensus 204 ~~Le~Ea~~lL~~LL~~~~~~~iss~~l~a~lnsL~~Iak~RP~~~~ 250 (257)
T 3gs3_A 204 EKLQEEGNNILDILLQFHGTTHISSVNLIACTSSLCTIAKMRPIFMG 250 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHhCcHHHH
Confidence 01123566666655443 344566888899988888876543
No 118
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=95.11 E-value=0.0072 Score=55.32 Aligned_cols=164 Identities=13% Similarity=0.112 Sum_probs=104.6
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhHhHHH
Q 006253 97 ILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKIL 176 (653)
Q Consensus 97 ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~ 176 (653)
+...+.++++.||..++..+ + + +.+...+.++++.+|..+...+ .++
T Consensus 79 l~~L~~D~~~~VR~~aA~~L--------~----~---~~L~~ll~D~d~~VR~~aA~~l-------~~~----------- 125 (244)
T 1lrv_A 79 LTPLIRDSDEVVRRAVAYRL--------P----R---EQLSALMFDEDREVRITVADRL-------PLE----------- 125 (244)
T ss_dssp GGGGTTCSSHHHHHHHHTTS--------C----S---GGGGGTTTCSCHHHHHHHHHHS-------CTG-----------
T ss_pred HHHHccCcCHHHHHHHHHHC--------C----H---HHHHHHHcCCCHHHHHHHHHhC-------CHH-----------
Confidence 44567888999999998642 3 1 3456778899999998877632 111
Q ss_pred HHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHH
Q 006253 177 TAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAP 256 (653)
Q Consensus 177 ~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 256 (653)
.+...++ |+++.||..+...+ .. +.+..+++++++.+|..+...+. .
T Consensus 126 -~L~~L~~--D~d~~VR~~aA~~l-------~~------------~~l~~l~~D~d~~VR~~aa~~l~------~----- 172 (244)
T 1lrv_A 126 -QLEQMAA--DRDYLVRAYVVQRI-------PP------------GRLFRFMRDEDRQVRKLVAKRLP------E----- 172 (244)
T ss_dssp -GGGGGTT--CSSHHHHHHHHHHS-------CG------------GGGGGTTTCSCHHHHHHHHHHSC------G-----
T ss_pred -HHHHHHc--CCCHHHHHHHHHhc-------CH------------HHHHHHHcCCCHHHHHHHHHcCC------H-----
Confidence 1223345 89999999887631 10 12345677899999998877411 1
Q ss_pred hHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCc
Q 006253 257 YIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQ 336 (653)
Q Consensus 257 ~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~ 336 (653)
+.+....+|.++.||..+... +.. +.+...+.
T Consensus 173 ------~ll~~ll~D~d~~VR~aaa~~---l~~---------------------------------~~L~~Ll~------ 204 (244)
T 1lrv_A 173 ------ESLGLMTQDPEPEVRRIVASR---LRG---------------------------------DDLLELLH------ 204 (244)
T ss_dssp ------GGGGGSTTCSSHHHHHHHHHH---CCG---------------------------------GGGGGGGG------
T ss_pred ------HHHHHHHcCCCHHHHHHHHHh---CCH---------------------------------HHHHHHHc------
Confidence 122345678899999877743 110 01111111
Q ss_pred cCCCccccHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHH
Q 006253 337 DQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFG 392 (653)
Q Consensus 337 ~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~ 392 (653)
|.+|.+|..+...++ .+.+... .|++|.+|+++...||
T Consensus 205 ---D~d~~VR~~aa~~l~--------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 205 ---DPDWTVRLAAVEHAS--------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp ---CSSHHHHHHHHHHSC--------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred ---CCCHHHHHHHHHcCC--------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 245999998887754 2555556 8999999999876554
No 119
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=95.04 E-value=2.8 Score=40.81 Aligned_cols=142 Identities=11% Similarity=0.149 Sum_probs=98.1
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHh-hC---cchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHh
Q 006253 3 AEVTQILLNAQSVDGTVRKQAEESLKQYQE-QN---LPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFEL 78 (653)
Q Consensus 3 ~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~-~~---~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~ 78 (653)
+.++.+|+.+.....+.+-....+.+++.- .+ .++|+..+++...+ .+.++|.+.+-++.....++
T Consensus 25 ~~v~~lln~A~~~~~~~Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d--~~~~vRk~~a~FieEa~~~~-------- 94 (386)
T 3o2t_A 25 ERVVDLLNQAALITNDSKITVLKQVQELIINKDPTLLDNFLDEIIAFQAD--KSIEVRKFVIGFIEEACKRD-------- 94 (386)
T ss_dssp HHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGC--SCHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHhhhccChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccC--CcHHHHHHHHHHHHHHHHHH--------
Confidence 467888888855333556666666666433 33 35788877776664 47999999999988766422
Q ss_pred hhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhc------CC------CCCc---hHHHHHHHhhcCC
Q 006253 79 VQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIEL------PH------KQWP---ELIGALLSNIHQL 143 (653)
Q Consensus 79 ~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~------~~------~~~~---~l~~~l~~~l~~~ 143 (653)
.+....+.+.|...+.++++.|.+.+..+.+.+....+ +. ..|. .+-..++..+.+.
T Consensus 95 --------~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~ 166 (386)
T 3o2t_A 95 --------IELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSD 166 (386)
T ss_dssp --------GGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCS
T ss_pred --------HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccC
Confidence 23345566777788888888888888888887764321 21 2474 4556777778888
Q ss_pred ChhHHHHHHHHHHHHHhhh
Q 006253 144 PPHTKQATLETLGYICEEV 162 (653)
Q Consensus 144 ~~~~~~~~l~~l~~l~~~~ 162 (653)
+.-+|-.++..+..++-..
T Consensus 167 n~GVrl~aiKFle~VIl~q 185 (386)
T 3o2t_A 167 NDGIRTHAIKFVEGLIVTL 185 (386)
T ss_dssp SHHHHHHHHHHHHHHHHHT
T ss_pred CcchHHHHHHHHHHHHHHh
Confidence 9999999999999877543
No 120
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=94.88 E-value=2.4 Score=41.22 Aligned_cols=163 Identities=11% Similarity=0.060 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhh------
Q 006253 89 VKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEV------ 162 (653)
Q Consensus 89 ~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~------ 162 (653)
...++.+.+++.-.+++..+|+..+..+...+... + ...+.+++.|...+.+.++.+.+.++.+...+....
T Consensus 60 Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~-~-el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~ 137 (386)
T 3o2t_A 60 LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRD-I-ELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVK 137 (386)
T ss_dssp GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC-G-GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33446677888888888999999999999998765 3 245888888999999899999988888887775432
Q ss_pred ccc------ccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhh-------------cC----Ch-----
Q 006253 163 SSD------AVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQAN-------------FS----ND----- 214 (653)
Q Consensus 163 ~~~------~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~-------------~~----~~----- 214 (653)
.+. .. ...+..+-..++..+. ..+..+|..++|.+..++...... +. ..
T Consensus 138 ~~~~~~~~e~~-W~~m~~lK~~Il~~~d--s~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L 214 (386)
T 3o2t_A 138 SRVISELQEAC-WDMVSAMAGDIILLLD--SDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYI 214 (386)
T ss_dssp C-CCCHHHHHH-HHHHHHHHHHHHHGGG--CSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSS
T ss_pred CCCcchhHHHH-HHHHHHHHHHHHHHhc--cCCcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcC
Confidence 011 01 2334455555666665 578999999999999988643210 00 00
Q ss_pred ------hHHHHHHHHHHhhhcC--CcHHHHHHHHHHHHHHHHHhHHhhHH
Q 006253 215 ------MERDYIMRVVCEATLS--PEVKIRQAAFECLVAISSTYYEKLAP 256 (653)
Q Consensus 215 ------~~~~~il~~l~~~~~~--~~~~~~~~~~~~l~~l~~~~~~~~~~ 256 (653)
..-..++..|+..+.. .+.-....++.+|..+++..|.+...
T Consensus 215 ~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~~~~r 264 (386)
T 3o2t_A 215 QYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMFMSE 264 (386)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGGGHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHHHHHH
Confidence 0112467777776654 24445567889999999988765443
No 121
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=93.61 E-value=1 Score=43.78 Aligned_cols=180 Identities=13% Similarity=0.061 Sum_probs=111.0
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhh--CcchHHHH-----HHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHH
Q 006253 5 VTQILLNAQSVDGTVRKQAEESLKQYQEQ--NLPGFLLS-----LAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFE 77 (653)
Q Consensus 5 l~~ll~~~~s~d~~~r~~A~~~L~~~~~~--~~~~~~~~-----l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~ 77 (653)
+.+++..+.|+|+..|......|..+..+ +.-.|+.. +...+-. ....+----.+-+++.+++..
T Consensus 176 i~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fiye-~e~~~GIaeLLeilgsIIngf------- 247 (392)
T 2jak_A 176 VLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYE-TEHHNGIAELLEILGSIINGF------- 247 (392)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHTS-SCCCSCHHHHHHHHHHHHHTC-------
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCCCCHHHHHHHHHHHHhcc-------
Confidence 56788888888988888888888766543 11122221 1122211 111111111233444444421
Q ss_pred hhhhccCCChHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHH
Q 006253 78 LVQRWLSLDSSVKAQIKSFILKTLSSPA-HDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLG 156 (653)
Q Consensus 78 ~~~~~~~l~~~~~~~i~~~ll~~l~~~~-~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~ 156 (653)
-..+-++.+..+.+.|+.+.+... ...-.+++.|+..+...+ | ..-..++..++...--.+......-+.-+.
T Consensus 248 ----a~PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKD-p-~L~~~vi~~LLk~WP~tns~KevlFL~ele 321 (392)
T 2jak_A 248 ----ALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKD-S-TLTEPVVMALLKYWPKTHSPKEVMFLNELE 321 (392)
T ss_dssp ----CSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHC-G-GGHHHHHHHHHHSSCSSCCTTHHHHHHHHH
T ss_pred ----CCCCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcC-c-hhHHHHHHHHHHhCCCCCchHHHHHHHHHH
Confidence 023556777777778888777665 456679999999999887 3 133455555655554445555556677788
Q ss_pred HHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHH
Q 006253 157 YICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALY 201 (653)
Q Consensus 157 ~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~ 201 (653)
.+++..++..+ +..+..++..+..+++ .++..|-..|+..+.
T Consensus 322 eiLe~~~~~~f-~~i~~~lF~~la~ci~--S~hfqVAErAL~~wn 363 (392)
T 2jak_A 322 EILDVIEPSEF-VKIMEPLFRQLAKCVS--SPHFQVAERALYYWN 363 (392)
T ss_dssp HHHHTCCHHHH-HHHHHHHHHHHHHHHT--CSSHHHHHHHHGGGG
T ss_pred HHHHhCCHHHH-HHHHHHHHHHHHHHHc--CCcHHHHHHHHHHhC
Confidence 88887766666 5667788888888998 688888888876543
No 122
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=92.74 E-value=8.6 Score=38.24 Aligned_cols=324 Identities=10% Similarity=0.091 Sum_probs=174.8
Q ss_pred HHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhH
Q 006253 176 LTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLA 255 (653)
Q Consensus 176 ~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 255 (653)
...++.+.+ .+...+..|...+..+..++++ ..+.-++.++.+..++|..+|..+++.|..++..
T Consensus 31 y~~Il~~~k---g~~k~K~LaaQ~I~kffk~FP~------l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~------ 95 (507)
T 3u0r_A 31 YQVILDGVK---GGTKEKRLAAQFIPKFFKHFPE------LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG------ 95 (507)
T ss_dssp HHHHHHGGG---SCHHHHHHHHHHHHHHGGGCGG------GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT------
T ss_pred HHHHHHhcC---CCHHHHHHHHHHHHHHHhhChh------hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh------
Confidence 444555554 5689999999988887665543 2356778888888899999999999998887764
Q ss_pred HhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCC
Q 006253 256 PYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEED 335 (653)
Q Consensus 256 ~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed 335 (653)
.++..+..++.+.++.+++.-...+=..+.++.... -+. .+..++..+...+
T Consensus 96 ~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~D----------------------pk~----tl~~lf~~i~~~~-- 147 (507)
T 3u0r_A 96 ENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMD----------------------AKG----TLGGLFSQILQGE-- 147 (507)
T ss_dssp TCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC----------------------HHH----HHHHHHHHHHHSC--
T ss_pred hhhhhHHHHHHHHHhccchHHHHHHHHHHHHHHhcC----------------------hHH----HHHHHHHHHcccc--
Confidence 457778888888888766543333333333333211 011 1122222222211
Q ss_pred ccCCCccccHhhhHHHHHHHHHhhcCCCch-----hchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHH
Q 006253 336 QDQDEGAWNIAMAGGTCLGLVARTVGDDIV-----PLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIA 410 (653)
Q Consensus 336 ~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~-----~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l 410 (653)
+ .+|.-+...|..=...++...+ ..+...+.+.+.|-....=...+..|+++--. ... +-..++
T Consensus 148 ----e---~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~---~t~-~g~qeL 216 (507)
T 3u0r_A 148 ----D---IVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVTGEEFVLFMKILSGLKSL---QTV-SGRQQL 216 (507)
T ss_dssp ----H---HHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTSGGG---SSH-HHHHHH
T ss_pred ----h---HHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhcccc---cCc-hHHHHH
Confidence 1 4554333333322222333332 23444455556444322222222233332211 111 223345
Q ss_pred HHHHHHHhc-----CCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc-hh-----hHHHHHHH
Q 006253 411 LNFMLTALM-----QDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VP-----NVAEKACG 479 (653)
Q Consensus 411 ~~~ll~~l~-----~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~-----~v~~~a~~ 479 (653)
++.+..... +..++..-.+.+.|+..-.-.+... .....++.=+...++..+++ .. ..+..-..
T Consensus 217 v~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~-----v~StkFv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK 291 (507)
T 3u0r_A 217 VELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKN-----VHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLK 291 (507)
T ss_dssp HHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTT-----BCCHHHHHHHHHHTGGGTTCCCCC--CCCHHHHHHH
T ss_pred HHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccC-----CChHHHHHHHHHhhccchhhccccccchHHHHHHHH
Confidence 555544310 2234556666666776665555421 22445666666666666654 22 26778888
Q ss_pred HHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhcccccc----------chhchH----HHHHHHHHHHHHhcccc----
Q 006253 480 ALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDA----------GESRLR----TAAYETLNEVVRCSTDE---- 541 (653)
Q Consensus 480 al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~----------~~~~~~----~~~~~~l~~l~~~~~~~---- 541 (653)
++..++..++. .+.....++.+++.|...+..... .+.+++ +..+-++-.++...++.
T Consensus 292 ~lAE~s~~~~~----~e~a~~~l~~iy~~L~~ymP~~p~~~~~~~~~~~~~p~l~fS~vECLLy~fH~L~~k~P~~l~e~ 367 (507)
T 3u0r_A 292 LLAEMSSFCGD----MEKLETNLRKLFDKLLEYMPLPPEEAENGENAGNEEPKLQFSYVECLLYSFHQLGRKLPDFLTAK 367 (507)
T ss_dssp HHHHHHTTCCC----CTTHHHHHHHHHHHHHTTSCCCC--------------CCCHHHHHHHHHHHHHHHTTCTHHHHCC
T ss_pred HHHHHccCCCc----cchHHHHHHHHHHHHHHHCCCCcccccccccccccCcccchhHHHHHHHHHHHHhhhChhhhccc
Confidence 88888877642 355567889999999887753321 012223 34444445555544421
Q ss_pred --------c---HHHHHHHHHHHHHHHHHHHH
Q 006253 542 --------T---APMVMQLVPLIMMELHQTLE 562 (653)
Q Consensus 542 --------~---~~~~~~l~~~l~~~l~~~~~ 562 (653)
| ..|+.......++.|++.+.
T Consensus 368 ~~~~~lkdfr~RLqy~ar~~q~yikkL~~~~~ 399 (507)
T 3u0r_A 368 LNAEKLKDFKIRLQYFARGLQVYIRQLRLALQ 399 (507)
T ss_dssp --CCTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 24677777777777777664
No 123
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=92.19 E-value=5.1 Score=34.66 Aligned_cols=80 Identities=14% Similarity=0.259 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhcccccHHHHHHHHH
Q 006253 472 NVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVP 551 (653)
Q Consensus 472 ~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~ 551 (653)
.+-.........++++ +.-.+.||+-.++|.++.++-..+.....+|..|...++.+++..+.... .+-|
T Consensus 61 ~~L~~lm~~~~ALl~N------~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~----~L~~ 130 (196)
T 4atg_A 61 EVLKTCIALYFSLIKN------KHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYK----TLAP 130 (196)
T ss_dssp HHHHHHHHHHHHHHHC------TTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTST----THHH
T ss_pred HHHHHHHHHHHHHHcC------CCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCc----hHHH
Confidence 3334445555666665 24578999999999999877544432237999999999999999886432 2334
Q ss_pred HHHHHHHHHH
Q 006253 552 LIMMELHQTL 561 (653)
Q Consensus 552 ~l~~~l~~~~ 561 (653)
.+.+.+.+.+
T Consensus 131 RI~~tl~k~l 140 (196)
T 4atg_A 131 RVLKTLKGVW 140 (196)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4555555544
No 124
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=92.09 E-value=10 Score=37.65 Aligned_cols=116 Identities=15% Similarity=0.202 Sum_probs=67.2
Q ss_pred HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHh-HHhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhh
Q 006253 218 DYIMRVVCEATLSPEVKIRQAAFECLVAISSTY-YEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILE 296 (653)
Q Consensus 218 ~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 296 (653)
..++..++......+..--..-+.-+..+.+.. +..+......++..+-+++.+.+-.|...|+.+|..---
T Consensus 283 ~~vi~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i------- 355 (449)
T 2npp_B 283 EPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYI------- 355 (449)
T ss_dssp HHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHH-------
T ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHH-------
Confidence 456666665553322221112233333444332 344566667788888889999999999999988864311
Q ss_pred hcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccc--cHhhhHHHHHHHHHhhc
Q 006253 297 EYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAW--NIAMAGGTCLGLVARTV 360 (653)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~--~~r~~a~~~L~~l~~~~ 360 (653)
.+.+...-..++|.++..+...- ...| ++|..+..++..+....
T Consensus 356 --------------~~li~~n~~~IlPii~p~L~~~s------~~HWn~~V~~la~~vlk~l~e~d 401 (449)
T 2npp_B 356 --------------MSLISDNAAKILPIMFPSLYRNS------KTHWNKTIHGLIYNALKLFMEMN 401 (449)
T ss_dssp --------------HHHHHTTHHHHHHHHHHHHTSCT------TCCSSTTHHHHHHHHHHHHHTTC
T ss_pred --------------HHHHHhchhhhHHhhHHHHHHHH------HHhcCHHHHHHHHHHHHHHHHHC
Confidence 12233333455666665543211 2457 58888888888777543
No 125
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=90.80 E-value=11 Score=35.49 Aligned_cols=130 Identities=14% Similarity=0.183 Sum_probs=84.4
Q ss_pred cCCChhHHH-HHHHHHHHHHhhhcccccchhhHhHHHHHHHh----cccCC-CCCHHHHHHHHHHHHHHHHhhhhhc--C
Q 006253 141 HQLPPHTKQ-ATLETLGYICEEVSSDAVEQDHVNKILTAVVQ----GMNAS-ESNNDVRLAATRALYNALGFAQANF--S 212 (653)
Q Consensus 141 ~~~~~~~~~-~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~----~l~~~-~~~~~vr~~a~~~l~~~~~~~~~~~--~ 212 (653)
++..|..|+ ..+.++..++..+ .+.+ .+.+..++..+++ -++.+ +..|+-|..-.+.|..+..++-..+ .
T Consensus 83 ~~~vp~aRepeVL~l~~tii~kl-~~~i-~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~l 160 (321)
T 1w9c_A 83 QRNVPAAREPEVLSTMAIIVNKL-GGHI-TAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAI 160 (321)
T ss_dssp HTSCGGGCCTHHHHHHHHHHHHH-GGGG-GGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHS
T ss_pred HhCCcccccHHHHHHHHHHHHHH-HHHh-hhhHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcC
Confidence 334444442 3577777787777 5555 5666666665543 34432 5789999998888888876543221 1
Q ss_pred ChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHH-------hhHHhHHHHHHHHHHHhhcC
Q 006253 213 NDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYE-------KLAPYIQDIFNITAKAVRED 272 (653)
Q Consensus 213 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~-------~~~~~l~~l~~~~~~~~~~~ 272 (653)
+......+++.+....++...++...+++++..+.....+ +...|.-.++..++..++|.
T Consensus 161 p~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~~~~~~~~Fy~~fy~~il~~if~VlTDs 227 (321)
T 1w9c_A 161 PPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDT 227 (321)
T ss_dssp CHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 2222356788888888999999999999988888776642 22344556666666666653
No 126
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=90.51 E-value=14 Score=36.12 Aligned_cols=118 Identities=14% Similarity=0.205 Sum_probs=66.9
Q ss_pred HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHh-HHhhHHhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhh
Q 006253 218 DYIMRVVCEATLSPEVKIRQAAFECLVAISSTY-YEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILE 296 (653)
Q Consensus 218 ~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 296 (653)
..++..++..-...+..-...-+.-+..+++.. +..+......++..+.+++.+.+-.|...|+.+|..--
T Consensus 250 ~~vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~-------- 321 (403)
T 3fga_B 250 EPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEY-------- 321 (403)
T ss_dssp HHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHH--------
T ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHH--------
Confidence 445666655543322221112333334444332 34455666778888888899999999999999885421
Q ss_pred hcCCCCCCCCCCchhhHHHhhhhhhHHHHHHHhhhccCCccCCCccc--cHhhhHHHHHHHHHhhcCC
Q 006253 297 EYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAW--NIAMAGGTCLGLVARTVGD 362 (653)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ed~~~d~~~~--~~r~~a~~~L~~l~~~~~~ 362 (653)
..+.+...-..++|.++..+-..- ...| ++|..+..++..+....++
T Consensus 322 -------------i~~li~~n~~~IlPii~p~L~~~~------~~HWn~~v~~l~~~vlk~l~e~d~~ 370 (403)
T 3fga_B 322 -------------IMSLISDNAAKILPIMFPSLYRNS------KTHWNKTIHGLIYNALKLFMEMNQK 370 (403)
T ss_dssp -------------HHHHHHTTHHHHHHHHHHHHHHTT------SCCSCHHHHHHHHHHHHHHHTTSCC
T ss_pred -------------HHHHHHHhHHHHHHHHHHHHHHHH------HHccCHHHHHHHHHHHHHHHHhCHH
Confidence 112233333345555554443211 2457 5888888888887776553
No 127
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=89.40 E-value=33 Score=38.88 Aligned_cols=130 Identities=14% Similarity=0.065 Sum_probs=78.7
Q ss_pred HHHHHhcCC----CChHHHHHHHHHHHHHHhhhcCC-CC-----CchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcc
Q 006253 95 SFILKTLSS----PAHDARSTASQVVAKVAGIELPH-KQ-----WPELIGALLSNIHQLPPHTKQATLETLGYICEEVSS 164 (653)
Q Consensus 95 ~~ll~~l~~----~~~~vr~~~~~~l~~ia~~~~~~-~~-----~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~ 164 (653)
+.+...+.+ .++.+|..+..+++.+++..-.. .. .+.+.+.+.+.+...+...+..++.+|+.+-. |
T Consensus 394 ~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~---p 470 (1056)
T 1lsh_A 394 SYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ---P 470 (1056)
T ss_dssp HHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC---G
T ss_pred HHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC---h
Confidence 344555554 35689999999999998764221 11 34455666666677777778888888876422 1
Q ss_pred cccchhhHhHHHHHHHhccc-----CCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhh--cCCcHHHHH
Q 006253 165 DAVEQDHVNKILTAVVQGMN-----ASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEAT--LSPEVKIRQ 237 (653)
Q Consensus 165 ~~~~~~~~~~l~~~l~~~l~-----~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~--~~~~~~~~~ 237 (653)
. .++.+...+. ..+....+|.+|+.+|..+.... ...+-+.+.++. ...+.++|.
T Consensus 471 ~---------~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~---------p~~v~~il~~i~~n~~e~~EvRi 532 (1056)
T 1lsh_A 471 N---------SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD---------PRKVQEIVLPIFLNVAIKSELRI 532 (1056)
T ss_dssp G---------GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC---------HHHHHHHHHHHHHCTTSCHHHHH
T ss_pred h---------HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc---------hHHHHHHHHHHhcCCCCChHHHH
Confidence 1 2222333321 11345689999999988754321 123444555544 346889998
Q ss_pred HHHHHHHH
Q 006253 238 AAFECLVA 245 (653)
Q Consensus 238 ~~~~~l~~ 245 (653)
.++..|..
T Consensus 533 aA~~~Lm~ 540 (1056)
T 1lsh_A 533 RSCIVFFE 540 (1056)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88876643
No 128
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=89.10 E-value=15 Score=34.69 Aligned_cols=146 Identities=17% Similarity=0.156 Sum_probs=91.0
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHH-HHhh-C-cchH-----HHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhh
Q 006253 3 AEVTQILLNAQSVDGTVRKQAEESLKQ-YQEQ-N-LPGF-----LLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHR 74 (653)
Q Consensus 3 ~~l~~ll~~~~s~d~~~r~~A~~~L~~-~~~~-~-~~~~-----~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~ 74 (653)
.+...++.++.+++...++.|-..|.+ +++. + .++| +.+|+.++.+ .+.+....++..|++++....
T Consensus 118 ~ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~--~~gN~q~Y~L~AL~~LM~~v~--- 192 (339)
T 3dad_A 118 VRVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAA--ADHNYQSYILRALGQLMLFVD--- 192 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSHH---
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHh--cChHHHHHHHHHHHHHHhccc---
Confidence 345678888889999999999999988 5432 1 1333 3467777764 388999999999999997632
Q ss_pred HHHhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhc-----------------CCCCCchHHHHHH
Q 006253 75 KFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIEL-----------------PHKQWPELIGALL 137 (653)
Q Consensus 75 ~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~-----------------~~~~~~~l~~~l~ 137 (653)
-|..+-. .....+.+...+.+.+..|.+.+..++-.++.+.. ....|.+++..|.
T Consensus 193 ------Gm~gvvs--~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~ 264 (339)
T 3dad_A 193 ------GMLGVVA--HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILE 264 (339)
T ss_dssp ------HHHHHHH--CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHT
T ss_pred ------cccchhC--CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHh
Confidence 1211100 12344556666666666666666666666655431 0123655554432
Q ss_pred HhhcCCChhHHHHHHHHHHHHHhhh
Q 006253 138 SNIHQLPPHTKQATLETLGYICEEV 162 (653)
Q Consensus 138 ~~l~~~~~~~~~~~l~~l~~l~~~~ 162 (653)
+. ++.+...+..++..+..++...
T Consensus 265 ~~-~~~D~elq~~amtLIN~lL~~a 288 (339)
T 3dad_A 265 EK-NGADPELLVYTVTLINKTLAAL 288 (339)
T ss_dssp TT-TSCCHHHHHHHHHHHHHHHHHC
T ss_pred cc-CCCCHHHHHHHHHHHHHHHhcC
Confidence 21 3567777777777777776665
No 129
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=88.98 E-value=3.9 Score=39.75 Aligned_cols=217 Identities=15% Similarity=0.215 Sum_probs=123.4
Q ss_pred CcchhhHHHHHHHHHHhhcCCC--CCcchHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCcc
Q 006253 378 KQEWRQREAATYAFGSILEGPS--PEKLVPLVN-IALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQG 454 (653)
Q Consensus 378 ~~~~~~r~aal~~l~~i~~~~~--~~~~~~~l~-~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~ 454 (653)
++.|..-..++..+..+.+... +.....+++ ..+-.++..+ ++++++=|.....+|.++-..+.. ...
T Consensus 140 e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lf-dSeDpRERd~LktiLhrIY~Kf~~--------~R~ 210 (392)
T 2jak_A 140 EAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELF-DSEDPRERDFLKTTLHRIYGKFLG--------LRA 210 (392)
T ss_dssp CTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHHHHCGG--------GHH
T ss_pred ccCChhHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHHHH--------HHH
Confidence 4456555555555555554321 111122222 3556677788 899999999988888887766542 344
Q ss_pred chHHHHH-HHHHhccc-h--hhHHHHHHHHHHHHHhcccCCCCCCCCCch-hHHHHHHHHHHhccccccchhchHHHHHH
Q 006253 455 NCQQIIS-VLLQSMKD-V--PNVAEKACGALYFLAQGFEDAISPSSPLTP-FFQEIVQALLTVTHREDAGESRLRTAAYE 529 (653)
Q Consensus 455 ~~~~il~-~l~~~l~d-~--~~v~~~a~~al~~~~~~~~~~~~~~~~l~~-~l~~i~~~L~~~l~~~~~~~~~~~~~~~~ 529 (653)
++...++ .+.+.+.+ . ..+ ......++.++..+. ..+.+ +..-+...|+.+...... ..-......
T Consensus 211 ~Irk~i~nif~~fiye~e~~~GI-aeLLeilgsIIngfa------~PLKeehk~Fl~~vLlPLhk~~~l--~~y~~qL~y 281 (392)
T 2jak_A 211 YIRKQINNIFYRFIYETEHHNGI-AELLEILGSIINGFA------LPLKEEHKIFLLKVLLPLHKVKSL--SVYHPQLAY 281 (392)
T ss_dssp HHHHHHHHHHHHHHTSSCCCSCH-HHHHHHHHHHHHTCC------SSCCHHHHHHHHHTTGGGGTSGGG--GGTHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhccC------CCCcHHHHHHHHHHhHhhccCCcH--HHhHHHHHH
Confidence 4444443 34444332 1 222 355666777777642 12332 333334444444443321 122234567
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHhHHHHHHHHhCCCcchhhHhhHhHHHH
Q 006253 530 TLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQM 609 (653)
Q Consensus 530 ~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~i 609 (653)
|+..+++..+.-..+ ++..+++.|=. ++..++. ..+.-+..+...++..+ |.....++
T Consensus 282 cv~qf~eKDp~L~~~----vi~~LLk~WP~-------tns~Kev------lFL~eleeiLe~~~~~~-----f~~i~~~l 339 (392)
T 2jak_A 282 CVVQFLEKDSTLTEP----VVMALLKYWPK-------THSPKEV------MFLNELEEILDVIEPSE-----FVKIMEPL 339 (392)
T ss_dssp HHHHHHHHCGGGHHH----HHHHHHHSSCS-------SCCTTHH------HHHHHHHHHHHTCCHHH-----HHHHHHHH
T ss_pred HHHHHHhcCchhHHH----HHHHHHHhCCC-------CCchHHH------HHHHHHHHHHHhCCHHH-----HHHHHHHH
Confidence 777777766543333 33345555543 1223321 14566777777777665 88889999
Q ss_pred HHHHHHHHhccCcchhhhHHHHHHH
Q 006253 610 MGLFLRVFAIRSATAHEEAMLAIGA 634 (653)
Q Consensus 610 ~~~l~~~l~~~~~~~~e~~~~~~~~ 634 (653)
+..+.+.+++.+-.|-|.|+..|.+
T Consensus 340 F~~la~ci~S~hfqVAErAL~~wnN 364 (392)
T 2jak_A 340 FRQLAKCVSSPHFQVAERALYYWNN 364 (392)
T ss_dssp HHHHHHHHTCSSHHHHHHHHGGGGC
T ss_pred HHHHHHHHcCCcHHHHHHHHHHhCc
Confidence 9999999998888888888877754
No 130
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=88.77 E-value=4 Score=38.40 Aligned_cols=152 Identities=10% Similarity=0.013 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHH-hccccccchhchH-HHHHHHHHHHHHhcccccHHHHHHHH
Q 006253 473 VAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLT-VTHREDAGESRLR-TAAYETLNEVVRCSTDETAPMVMQLV 550 (653)
Q Consensus 473 v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~-~l~~~~~~~~~~~-~~~~~~l~~l~~~~~~~~~~~~~~l~ 550 (653)
++......+..+++... ........++|.|+. ++.+.....+..| ..++.+++.++...++.+.|++..++
T Consensus 45 vKkeiLkLiet~i~~~~-------d~~~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il 117 (321)
T 1w9c_A 45 VKRETLKLISGWVSRSN-------DPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIF 117 (321)
T ss_dssp HHHHHHHHHHHHHTTCS-------CHHHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHcCC-------CHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 34455555666665432 223334455555543 2222211011122 26889999999999998889888888
Q ss_pred HHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHhHHHHHHHHhCCCcchhhHh-hHhHHHHHHHHHHHHhccCcchhhhHH
Q 006253 551 PLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVF-MQYADQMMGLFLRVFAIRSATAHEEAM 629 (653)
Q Consensus 551 ~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~-~~~~~~i~~~l~~~l~~~~~~~~e~~~ 629 (653)
..+++.--+.+.. |-+..++.|..-...+.++...+=..- -.+ .+....+++.+++..+.+.+.+-+.++
T Consensus 118 ~~VFe~TL~MI~~------df~eyPehR~~Ff~LL~ai~~~cF~al---~~lp~~~fklvidsiiWa~kH~~r~V~e~gL 188 (321)
T 1w9c_A 118 DAVFECTLNMINK------DFEEYPEHRTNFFLLLQAVNSHCFPAF---LAIPPTQFKLVLDSIIWAFKHTMRNVADTGL 188 (321)
T ss_dssp HHHHHHHHHHHSS------TTTCSHHHHHHHHHHHHHHHHHCTTHH---HHSCHHHHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHHHHHHHHHHhc------ccccChHHHHHHHHHHHHHHHHhHHHH---HcCCHHHHHHHHHHHHHHcCCCCchHHHHHH
Confidence 8887765555531 111112344445556666665543220 001 135677899999999988888888888
Q ss_pred HHHHHHHHHhc
Q 006253 630 LAIGALAYATG 640 (653)
Q Consensus 630 ~~~~~l~~~~~ 640 (653)
.++-.+...+.
T Consensus 189 ~il~~ll~n~~ 199 (321)
T 1w9c_A 189 QILFTLLQNVA 199 (321)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 87777666553
No 131
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=87.25 E-value=4.5 Score=45.87 Aligned_cols=156 Identities=10% Similarity=0.128 Sum_probs=95.3
Q ss_pred ccHhhhHHHHHHHHHhhc-------CCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHH
Q 006253 343 WNIAMAGGTCLGLVARTV-------GDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFML 415 (653)
Q Consensus 343 ~~~r~~a~~~L~~l~~~~-------~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll 415 (653)
..+|..+.-+++.++... +.+.++.+...+.+.+...+...+..++.+||.+... .. ++.+.
T Consensus 409 ~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p---~~--------l~~l~ 477 (1056)
T 1lsh_A 409 PILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP---NS--------IKKIQ 477 (1056)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG---GG--------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh---hH--------HHHHH
Confidence 457778888888887643 2244666777777777777777788889999988752 21 23333
Q ss_pred HHhc------CCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc---hhhHHHHHHHHHHHHHh
Q 006253 416 TALM------QDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD---VPNVAEKACGALYFLAQ 486 (653)
Q Consensus 416 ~~l~------~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d---~~~v~~~a~~al~~~~~ 486 (653)
+++. .+...+||.+|+++|.++....+ ..+-+.+++.+.| ++.+|..|+..|-....
T Consensus 478 ~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p--------------~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~P 543 (1056)
T 1lsh_A 478 RFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDP--------------RKVQEIVLPIFLNVAIKSELRIRSCIVFFESKP 543 (1056)
T ss_dssp TTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCH--------------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTCC
T ss_pred HhhcCccccccccchHHHHHHHHHHHHhhhhch--------------HHHHHHHHHHhcCCCCChHHHHHHHHHHHHHCc
Confidence 3331 12356899999999998875432 1233344444432 58899888766642211
Q ss_pred cccCCCCCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhccc
Q 006253 487 GFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTD 540 (653)
Q Consensus 487 ~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~ 540 (653)
-. .+++.+...+.... +..++..+...|.++++....
T Consensus 544 -----------~~----~~l~~ia~~l~~E~--~~QV~sfv~S~l~sla~s~~P 580 (1056)
T 1lsh_A 544 -----------SV----ALVSMVAVRLRREP--NLQVASFVYSQMRSLSRSSNP 580 (1056)
T ss_dssp -----------CH----HHHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTCCSG
T ss_pred -----------CH----HHHHHHHHHHhhCc--hHHHHHHHHHHHHHHHhcCCc
Confidence 11 33444444444333 356777777777777776543
No 132
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=83.84 E-value=29 Score=32.72 Aligned_cols=187 Identities=10% Similarity=0.106 Sum_probs=117.1
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHhhhcCC--------CCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccc
Q 006253 95 SFILKTLSSPAHDARSTASQVVAKVAGIELPH--------KQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDA 166 (653)
Q Consensus 95 ~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~--------~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~ 166 (653)
..|+..|..=+-+-|+.++.+++.+.+...+. ...|+++..|+..-.+++...- +-..|...+++ +.
T Consensus 81 ~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~--~G~mLRecir~---e~ 155 (341)
T 1upk_A 81 STLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALN--CGIMLRECIRH---EP 155 (341)
T ss_dssp HHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHH--HHHHHHHHHTS---HH
T ss_pred HHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhH--HHHHHHHHHHh---HH
Confidence 34444555556677888888888777654221 1358888888888766553221 11222222221 11
Q ss_pred cchhhH-hHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhh---hcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHH
Q 006253 167 VEQDHV-NKILTAVVQGMNASESNNDVRLAATRALYNALGFAQA---NFSNDMERDYIMRVVCEATLSPEVKIRQAAFEC 242 (653)
Q Consensus 167 ~~~~~~-~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~---~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~ 242 (653)
+.+-.+ ...+-.+++.+. .++-++..-|+.++..++.-.+. .+.. ...+.++.....++..++--.+..+++.
T Consensus 156 la~~iL~~~~f~~fF~yv~--~~~FdiasDAf~TfkelLt~Hk~lvaefL~-~nyd~Ff~~y~~Ll~S~NYVTkRQSlKL 232 (341)
T 1upk_A 156 LAKIILWSEQFYDFFRYVE--MSTFDIASDAFATFKDLLTRHKLLSAEFLE-QHYDRFFSEYEKLLHSENYVTKRQSLKL 232 (341)
T ss_dssp HHHHHHHSGGGGHHHHHTT--CSSHHHHHHHHHHHHHHHHSSHHHHHHHHH-HTHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHhc--CCCchHHHHHHHHHHHHHhccHHHHHHHHH-HhHHHHHHHHHHHhcCCcchhHHHHHHH
Confidence 100000 112224455666 57888888888888776542211 1100 1125677777778888888999999999
Q ss_pred HHHHHHHh--HHhhHHhHH--HHHHHHHHHhhcCChhHHHHHHHhHHHhhH
Q 006253 243 LVAISSTY--YEKLAPYIQ--DIFNITAKAVREDEEPVALQAIEFWSSVCD 289 (653)
Q Consensus 243 l~~l~~~~--~~~~~~~l~--~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 289 (653)
|+++.... ...+..|+. .-+..+...+++....++..|+....-++.
T Consensus 233 LgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 233 LGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeee
Confidence 99999874 455666763 667778888999999999999988877765
No 133
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=83.07 E-value=32 Score=32.51 Aligned_cols=188 Identities=13% Similarity=0.123 Sum_probs=112.6
Q ss_pred CCChhHHHHHHHHHhhhcchhhhhhHHHhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCC--C
Q 006253 50 EKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPH--K 127 (653)
Q Consensus 50 ~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~--~ 127 (653)
..+-+.|.-++.++.+.+++....+-. ...|- ..+..+...|+.+-.+++ +--..+..+...++++.-. -
T Consensus 89 ~L~fE~RKd~~~if~~llr~~~~~~~p--~v~Yl----~~~peil~~L~~gYe~~d--iAl~~G~mLRecir~e~la~~i 160 (341)
T 1upk_A 89 LIDFEGKKDVAQIFNNILRRQIGTRTP--TVEYI----CTQQNILFMLLKGYESPE--IALNCGIMLRECIRHEPLAKII 160 (341)
T ss_dssp GSCHHHHHHHHHHHHHHHTCCBTTBCH--HHHHH----HTCTHHHHHHHHGGGSTT--THHHHHHHHHHHHTSHHHHHHH
T ss_pred cCCchhhccHHHHHHHHHhcccCCCCc--hhHHH----HcCHHHHHHHHHhhccch--hHhHHHHHHHHHHHhHHHHHHH
Confidence 467888888888888877764321100 00110 113456666777766554 2233344444333322000 0
Q ss_pred CCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhc---ccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHH
Q 006253 128 QWPELIGALLSNIHQLPPHTKQATLETLGYICEEVS---SDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNAL 204 (653)
Q Consensus 128 ~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~---~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~ 204 (653)
.+.+.+-.+++.++.++-++---|+..+..+...-. .+++ ..+.+.++..+.+.+. .++.-+|..+++.|+.++
T Consensus 161 L~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL-~~nyd~Ff~~y~~Ll~--S~NYVTkRQSlKLLgelL 237 (341)
T 1upk_A 161 LWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFL-EQHYDRFFSEYEKLLH--SENYVTKRQSLKLLGELL 237 (341)
T ss_dssp HHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHH-HHTHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHH-HHhHHHHHHHHHHHhc--CCcchhHHHHHHHHHHHH
Confidence 112333455667788888887777877777655421 2334 3456677777778777 689999999999999987
Q ss_pred HhhhhhcCCh-hHH--HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q 006253 205 GFAQANFSND-MER--DYIMRVVCEATLSPEVKIRQAAFECLVAISST 249 (653)
Q Consensus 205 ~~~~~~~~~~-~~~--~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~ 249 (653)
.-= .++... .+. ..-+..+..++.+.+..++-.++..+.-++.+
T Consensus 238 ldr-~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVAN 284 (341)
T 1upk_A 238 LDR-HNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN 284 (341)
T ss_dssp HSG-GGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC
T ss_pred hCc-hHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeC
Confidence 420 111000 010 34677778888899999999999888877764
No 134
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=82.03 E-value=12 Score=31.73 Aligned_cols=114 Identities=14% Similarity=0.182 Sum_probs=70.9
Q ss_pred hhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCcc
Q 006253 375 NITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQG 454 (653)
Q Consensus 375 ~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~ 454 (653)
.+.++||.. ..-++.++... .. --...+..|.+.+ ++.++.+...|+.+|..+.+.++.. ....-
T Consensus 25 ~l~~~Dw~~----ileicD~I~~~-~~----~~k~A~ral~krl-~~~n~~vql~AL~LLd~~vkNCG~~-----Fh~ev 89 (171)
T 1juq_A 25 SNRQEDWEY----IIGFCDQINKE-LE----GPQIAVRLLAHKI-QSPQEWEALQALTVLEACMKNCGRR-----FHNEV 89 (171)
T ss_dssp TCSSCCHHH----HHHHHHHHHHS-TT----HHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHSHHH-----HHHHH
T ss_pred CCCCcCHHH----HHHHHHHHHcC-Cc----cHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHcCHH-----HHHHH
Confidence 445677844 44455444331 11 1245567788889 9999999999999999999988631 11111
Q ss_pred chHHHHHHHHHhcc-----c--hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHH
Q 006253 455 NCQQIISVLLQSMK-----D--VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLT 511 (653)
Q Consensus 455 ~~~~il~~l~~~l~-----d--~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~ 511 (653)
--..++..|...+. + +..|+.++...+......+.. .|.+...+..|..
T Consensus 90 as~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~--------~~~i~~~y~~Lk~ 145 (171)
T 1juq_A 90 GKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALPE--------EAKIKDAYHMLKR 145 (171)
T ss_dssp TSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHcCC--------CcHHHHHHHHHHH
Confidence 11234555555543 1 478999999999988887642 2455555555543
No 135
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=77.32 E-value=11 Score=30.76 Aligned_cols=75 Identities=7% Similarity=-0.041 Sum_probs=52.8
Q ss_pred chHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHH--HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhcc
Q 006253 367 LVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLV--NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHG 443 (653)
Q Consensus 367 ~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l--~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~ 443 (653)
..+..+...+.+.++.+..-|+..+..++..|+ ..+...+ ..++..+.+.+ ...++.||..++..+..++..+.+
T Consensus 42 ~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG-~~f~~evas~~Fl~el~~l~-~~~~~~Vk~kil~li~~W~~~f~~ 118 (140)
T 3ldz_A 42 DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCG-KIFHLEVCSRDFASEVSNVL-NKGHPKVCEKLKALMVEWTDEFKN 118 (140)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSC-HHHHHHHSSHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcC-HHHHHHHhhHHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHhCC
Confidence 455566677788888888888888999998886 3222111 22334444445 457889999999999999998864
No 136
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=77.27 E-value=50 Score=31.23 Aligned_cols=148 Identities=10% Similarity=0.105 Sum_probs=83.4
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHHhhh---cccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhc
Q 006253 135 ALLSNIHQLPPHTKQATLETLGYICEEV---SSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANF 211 (653)
Q Consensus 135 ~l~~~l~~~~~~~~~~~l~~l~~l~~~~---~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~ 211 (653)
.+++.+.+.+...+..++.-|..+...- -.+++.+.-+..++ .... +.+.+....++.+|..++.|....-
T Consensus 122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li----~vi~--~~~gN~q~Y~L~AL~~LM~~v~Gm~ 195 (339)
T 3dad_A 122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLI----RVGA--AADHNYQSYILRALGQLMLFVDGML 195 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHH----HHHT--TSCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHH----HHHH--hcChHHHHHHHHHHHHHHhcccccc
Confidence 3344445556666677777777644321 02222122223333 3334 4578889999999999988743210
Q ss_pred CChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhHHhhHHhHHH-----------HHHHHHHHhh---cCChhHH
Q 006253 212 SNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQD-----------IFNITAKAVR---EDEEPVA 277 (653)
Q Consensus 212 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~-----------l~~~~~~~~~---~~~~~~~ 277 (653)
.. ...+.+++-+..++...+..+.+.+++.|..++...+....-.... .+..++..++ ..|.++.
T Consensus 196 gv-vs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq 274 (339)
T 3dad_A 196 GV-VAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELL 274 (339)
T ss_dssp HH-HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHH
T ss_pred ch-hCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHH
Confidence 00 0015677777777777788999999999999888654322211111 1223344444 3566666
Q ss_pred HHHHHhHHHhhH
Q 006253 278 LQAIEFWSSVCD 289 (653)
Q Consensus 278 ~~a~~~~~~~~~ 289 (653)
..|+..+..+..
T Consensus 275 ~~amtLIN~lL~ 286 (339)
T 3dad_A 275 VYTVTLINKTLA 286 (339)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 666665554443
No 137
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=77.26 E-value=13 Score=30.66 Aligned_cols=74 Identities=14% Similarity=0.054 Sum_probs=53.8
Q ss_pred chHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHH--HHHHHHHHHHhcCC------CchHHHHHHHHHHHHHH
Q 006253 367 LVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLV--NIALNFMLTALMQD------PNNHVKDTTAWTLGRMF 438 (653)
Q Consensus 367 ~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l--~~l~~~ll~~l~~d------~~~~vr~~a~~~l~~~~ 438 (653)
..+..|...+.+.++.+..-|+..+-.++.+|+ ..+...+ ..++..+.+.+ .+ .++.||..++..+..++
T Consensus 48 ~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG-~~fh~eias~~Fl~eL~kl~-~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 48 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCG-KRFHDEVGKFRFLNELIKVV-SPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCC-HHHHHHHTSHHHHHHHHHHH-CTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcC-HHHHHHHhhHHHHHHHHHHH-cccccCCCCCHHHHHHHHHHHHHHH
Confidence 455666677888899999999999999999886 3221111 23344455555 43 57899999999999999
Q ss_pred hhhc
Q 006253 439 EFLH 442 (653)
Q Consensus 439 ~~~~ 442 (653)
..+.
T Consensus 126 ~~f~ 129 (149)
T 3g2s_A 126 VGLP 129 (149)
T ss_dssp HHCT
T ss_pred HHhC
Confidence 9886
No 138
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=75.46 E-value=16 Score=29.68 Aligned_cols=77 Identities=12% Similarity=0.109 Sum_probs=50.4
Q ss_pred hHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHhH
Q 006253 173 NKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYY 251 (653)
Q Consensus 173 ~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~ 251 (653)
...+..+..-++ ..++.+...|+..+..++.-+...|..+.....+++.+..++...++.++..++..+..+...+.
T Consensus 41 k~a~rai~Krl~--~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~ 117 (140)
T 3ldz_A 41 KDCLRSIMRRVN--HKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFK 117 (140)
T ss_dssp HHHHHHHHHHHT--CSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc--CCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhC
Confidence 445556666677 57888999999998888875543332111113355555444444678899999998888887664
No 139
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=73.83 E-value=23 Score=29.13 Aligned_cols=78 Identities=9% Similarity=0.093 Sum_probs=53.9
Q ss_pred hHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhc------CCcHHHHHHHHHHHHHH
Q 006253 173 NKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATL------SPEVKIRQAAFECLVAI 246 (653)
Q Consensus 173 ~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~------~~~~~~~~~~~~~l~~l 246 (653)
...+..+..-++ ..++.+...|+..+-.++.-+...|..+.....|++-+..++. ..+..++..+++.+..+
T Consensus 47 k~a~ral~krl~--~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 124 (149)
T 3g2s_A 47 PLATRLLAHKIQ--SPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSW 124 (149)
T ss_dssp HHHHHHHHHHHT--CSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHH
Confidence 445556667777 6889999999999999887654433221112346666665553 25789999999999998
Q ss_pred HHHhHH
Q 006253 247 SSTYYE 252 (653)
Q Consensus 247 ~~~~~~ 252 (653)
...++.
T Consensus 125 ~~~f~~ 130 (149)
T 3g2s_A 125 TVGLPE 130 (149)
T ss_dssp HHHCTT
T ss_pred HHHhCC
Confidence 887654
No 140
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=69.72 E-value=64 Score=29.10 Aligned_cols=96 Identities=17% Similarity=0.101 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHHHHHhhhcCC-C---CCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhc--------ccccchhhHh
Q 006253 106 HDARSTASQVVAKVAGIELPH-K---QWPELIGALLSNIHQLPPHTKQATLETLGYICEEVS--------SDAVEQDHVN 173 (653)
Q Consensus 106 ~~vr~~~~~~l~~ia~~~~~~-~---~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~--------~~~~~~~~~~ 173 (653)
+.+|-..-.++|++++.+-++ - ...|++|..+..+..+++..+..|..++..|...-. ++.+ .++.
T Consensus 116 E~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF--~av~ 193 (268)
T 2fv2_A 116 EYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERF--SHVA 193 (268)
T ss_dssp HHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHH--HHHH
T ss_pred hhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHH--HHHH
Confidence 589999999999999875331 0 126888888888988999888889988888765421 1222 2344
Q ss_pred HHHHHHHhcccCCCCCHHHHHHHHHHHHHHH
Q 006253 174 KILTAVVQGMNASESNNDVRLAATRALYNAL 204 (653)
Q Consensus 174 ~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~ 204 (653)
.++...+..+.. ++++.+.+..+.|..++.
T Consensus 194 ~vL~~mV~~l~~-~ps~RLLKhiircYlRLs 223 (268)
T 2fv2_A 194 MILGKMVLQLSK-EPSARLLKHVVRCYLRLS 223 (268)
T ss_dssp HHHHHHHHHTTT-SCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc-CCChHHHHHHHHHHHHHh
Confidence 455444444443 788998888888877754
No 141
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=69.12 E-value=23 Score=28.99 Aligned_cols=76 Identities=11% Similarity=0.088 Sum_probs=55.8
Q ss_pred chHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhh--HhHHHHHHHhcccC----CCCCHHHHHHHHHHHHHH
Q 006253 130 PELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDH--VNKILTAVVQGMNA----SESNNDVRLAATRALYNA 203 (653)
Q Consensus 130 ~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~--~~~l~~~l~~~l~~----~~~~~~vr~~a~~~l~~~ 203 (653)
.+.+..|...+++.++.+...|+.+|..+++++ +..+ ... ...++.-+...+.. +..+..||..++..+..+
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNC-G~~f-h~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 114 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHC-GEKF-HSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSW 114 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHH-HHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHc-CHHH-HHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHH
Confidence 467788888889999999999999999999998 4433 221 24555556665552 125789999999999987
Q ss_pred HHhh
Q 006253 204 LGFA 207 (653)
Q Consensus 204 ~~~~ 207 (653)
...+
T Consensus 115 ~~~f 118 (148)
T 1mhq_A 115 TVWF 118 (148)
T ss_dssp HHHC
T ss_pred HHHc
Confidence 6544
No 142
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=68.79 E-value=29 Score=29.03 Aligned_cols=99 Identities=12% Similarity=0.110 Sum_probs=62.9
Q ss_pred CCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhh-HhHHHHHHH
Q 006253 102 SSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDH-VNKILTAVV 180 (653)
Q Consensus 102 ~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~-~~~l~~~l~ 180 (653)
.+++...-..+|..+.. . + ..-.+.+..|...+.+.++.+...|+.+|..+++++ ...+-... -..++.-+.
T Consensus 29 ~~~Dw~~~leicD~I~~----~-~-~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNc-G~~Fh~evas~~Fl~el~ 101 (163)
T 1x5b_A 29 TTEDWSLIMDICDKVGS----T-P-NGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANC-GKIFHLEVCSRDFATEVR 101 (163)
T ss_dssp SSCCHHHHHHHHHHHHH----S-S-SHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHT-CHHHHHHHTSHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHhC----C-C-ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh-hHHHHHHHhhHHHHHHHH
Confidence 34555554445544332 2 2 122477888888899999999999999999999998 43331111 122333333
Q ss_pred hcccCCCCCHHHHHHHHHHHHHHHHhhh
Q 006253 181 QGMNASESNNDVRLAATRALYNALGFAQ 208 (653)
Q Consensus 181 ~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 208 (653)
..+.. ..++.||..++..+..+...+.
T Consensus 102 ~l~~~-~~~~~Vk~kil~li~~W~~~f~ 128 (163)
T 1x5b_A 102 AVIKN-KAHPKVCEKLKSLMVEWSEEFQ 128 (163)
T ss_dssp HHHHT-TCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHcc-CCCHHHHHHHHHHHHHHHHHhc
Confidence 33332 4678999999999988776544
No 143
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=66.85 E-value=35 Score=27.96 Aligned_cols=78 Identities=10% Similarity=0.122 Sum_probs=53.9
Q ss_pred hHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcC------CcHHHHHHHHHHHHHH
Q 006253 173 NKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLS------PEVKIRQAAFECLVAI 246 (653)
Q Consensus 173 ~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~------~~~~~~~~~~~~l~~l 246 (653)
...+..+..-++ ..++.+...|+..|-.++.-+...|..+.....+++-+..++.. .+..++..++..+..+
T Consensus 37 k~a~rai~krl~--~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 114 (148)
T 1mhq_A 37 THAPWLLAHKIQ--SPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSW 114 (148)
T ss_dssp HHHHHHHHHHHT--CSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHH
Confidence 344555566666 68899999999999998876544332211124577777766642 3789999999999988
Q ss_pred HHHhHH
Q 006253 247 SSTYYE 252 (653)
Q Consensus 247 ~~~~~~ 252 (653)
...++.
T Consensus 115 ~~~f~~ 120 (148)
T 1mhq_A 115 TVWFPE 120 (148)
T ss_dssp HHHCTT
T ss_pred HHHcCC
Confidence 877643
No 144
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=65.17 E-value=21 Score=32.04 Aligned_cols=73 Identities=8% Similarity=0.005 Sum_probs=52.0
Q ss_pred hchHHHHHhhhcCcchhhHHHHHH----HHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhh
Q 006253 366 PLVMPFVEENITKQEWRQREAATY----AFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFL 441 (653)
Q Consensus 366 ~~l~~~l~~~l~~~~~~~r~aal~----~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~ 441 (653)
|...+.+..++.|++.-.|.+|+. .++. ...+..-...++.++..+...+ +|++..|+.+..|+|..++...
T Consensus 107 ~~~~~~~~~W~~s~~~w~rR~ai~~q~~ll~~---~~~k~~~~~~~~~~l~~i~~~l-~~~~~~v~kAi~W~Lr~~gk~~ 182 (235)
T 1t06_A 107 NIAQDVADKWIASGDELKMSAGWSCYCWLLGN---RKDNAFSESKISDMLEMVKDTI-HHSPERTKSAMNNFLNTVAISY 182 (235)
T ss_dssp SSHHHHHHHHHHSCCHHHHHHHHHHHHHHHHH---SCGGGSCHHHHHHHHHHHHHHG-GGSCHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHcCcHHHHHHHHHHHHHHHHhh---ccccCcChhhHHHHHHHHHHHc-cCChHHHHHHHHHHHHHHHhhC
Confidence 556777778888887555556665 3333 1111223456778888888889 9999999999999999998865
Q ss_pred c
Q 006253 442 H 442 (653)
Q Consensus 442 ~ 442 (653)
+
T Consensus 183 ~ 183 (235)
T 1t06_A 183 V 183 (235)
T ss_dssp G
T ss_pred H
Confidence 3
No 145
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=63.75 E-value=64 Score=26.89 Aligned_cols=115 Identities=13% Similarity=0.182 Sum_probs=69.3
Q ss_pred hhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccC-c
Q 006253 375 NITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIIN-Q 453 (653)
Q Consensus 375 ~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~-~ 453 (653)
.+.++||.. ..-++.++... +. --...+..|.+.+ ++.++.+...|+.+|..+.+.++.. .+ .
T Consensus 27 ~~~~~Dw~~----~leicD~I~~~-~~----~~keA~ral~krl-~~~n~~vql~AL~LLd~~vkNcG~~------Fh~e 90 (163)
T 1x5b_A 27 YNTTEDWSL----IMDICDKVGST-PN----GAKDCLKAIMKRV-NHKVPHVALQALTLLGACVANCGKI------FHLE 90 (163)
T ss_dssp TCSSCCHHH----HHHHHHHHHHS-SS----HHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHTCHH------HHHH
T ss_pred CCCCcCHHH----HHHHHHHHhCC-Cc----cHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHhhHH------HHHH
Confidence 344567754 33444444331 11 1245567788889 9999999999999999999988531 11 0
Q ss_pred cchHHHHHHHHHhccc--hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHH
Q 006253 454 GNCQQIISVLLQSMKD--VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALL 510 (653)
Q Consensus 454 ~~~~~il~~l~~~l~d--~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~ 510 (653)
---..++..+...+.. ++.|+.++...+......+... .=..++...+..|.
T Consensus 91 vas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~~-----~~l~~i~~~Y~~Lk 144 (163)
T 1x5b_A 91 VCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQKD-----PQFSLISATIKSMK 144 (163)
T ss_dssp HTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTC-----STTHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcCC-----cccHHHHHHHHHHH
Confidence 0013344444444442 5789999988888888776531 11234455555554
No 146
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=62.67 E-value=24 Score=31.35 Aligned_cols=89 Identities=10% Similarity=0.082 Sum_probs=54.2
Q ss_pred ccccHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcc-hhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhc
Q 006253 341 GAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQE-WRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALM 419 (653)
Q Consensus 341 ~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~-~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~ 419 (653)
+.|.+....+.+++.+....++ .+.+.+.+...|++ |..|.|....+.. .. ..+.+.+++.+...+
T Consensus 102 ~nWd~~D~~a~~~~~~~~~~~~----~~~~~i~~W~~s~~~w~rR~ai~~~l~~-~~-------~~~~~~~~~i~~~~~- 168 (220)
T 2b6c_A 102 AWWDSVDAWRKFFGSWVALHLT----ELPTIFALFYGAENFWNRRVALNLQLML-KE-------KTNQDLLKKAIIYDR- 168 (220)
T ss_dssp CSHHHHHHHHHHHHHHHHHSGG----GHHHHHHHHTTCSSHHHHHHHHHTTTTC-GG-------GCCHHHHHHHHHHTT-
T ss_pred CcHHHHHHHHHHHHHHHHHChH----HHHHHHHHHHcCCCHHHHHHHHHHHHHH-HH-------CCCHHHHHHHHHHhC-
Confidence 3476655444445544433222 24566778888877 5555544433221 11 122345566666677
Q ss_pred CCCchHHHHHHHHHHHHHHhhhc
Q 006253 420 QDPNNHVKDTTAWTLGRMFEFLH 442 (653)
Q Consensus 420 ~d~~~~vr~~a~~~l~~~~~~~~ 442 (653)
+|++..|+.+..|+|..+++..+
T Consensus 169 ~d~~~yV~kavgW~Lr~~~k~~~ 191 (220)
T 2b6c_A 169 TTEEFFIQKAIGWSLRQYSKTNP 191 (220)
T ss_dssp TCCCHHHHHHHHHHHHHHTTTCH
T ss_pred CChHHHHHHHHHHHHHHHHhhCH
Confidence 99999999999999999987643
No 147
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=60.99 E-value=64 Score=28.65 Aligned_cols=116 Identities=15% Similarity=0.171 Sum_probs=69.4
Q ss_pred hhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCcc
Q 006253 375 NITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQG 454 (653)
Q Consensus 375 ~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~ 454 (653)
.+.++||.. .+-+..++... +.. -...+..|.+.+ ++.++.+...|+.+|..+.+.++..-+. .....+
T Consensus 20 ~~~~~dw~~----ileicD~I~~~-~~~----~k~a~ral~krl-~~~n~~v~l~aL~LLe~~vkNcG~~f~~-eias~~ 88 (226)
T 3zyq_A 20 LLLETDWES----ILQICDLIRQG-DTQ----AKYAVNSIKKKV-NDKNPHVALYALEVMESVVKNCGQTVHD-EVANKQ 88 (226)
T ss_dssp TCSSCCHHH----HHHHHHHHHTT-SSC----HHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHHCHHHHH-HHSSHH
T ss_pred CCCCcCHHH----HHHHHHHHhCC-Ccc----HHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHhcchHHHH-hhccHH
Confidence 344567744 44444444431 121 245577888889 9999999999999999999887631000 001223
Q ss_pred chHHHHHHHHHhccc--hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHH
Q 006253 455 NCQQIISVLLQSMKD--VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALL 510 (653)
Q Consensus 455 ~~~~il~~l~~~l~d--~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~ 510 (653)
++ ..|...+.. ++.|+.++...+......+... .. .+++..+...|.
T Consensus 89 fl----~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~----~~-l~~i~~~Y~~Lk 137 (226)
T 3zyq_A 89 TM----EELKDLLKRQVEVNVRNKILYLIQAWAHAFRNE----PK-YKVVQDTYQIMK 137 (226)
T ss_dssp HH----HHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTC----GG-GHHHHHHHHHHH
T ss_pred HH----HHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCC----cc-hHHHHHHHHHHH
Confidence 33 333333332 5789999998888888876431 11 245555555554
No 148
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=59.59 E-value=27 Score=28.20 Aligned_cols=76 Identities=12% Similarity=0.089 Sum_probs=51.4
Q ss_pred CchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhc----------CCCchHHHHHHHH
Q 006253 363 DIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALM----------QDPNNHVKDTTAW 432 (653)
Q Consensus 363 ~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~----------~d~~~~vr~~a~~ 432 (653)
..+..+++.|...+++.+|.++.-++.+|-.++..- ...+...+..-+..|-.+.. +|....||.+|-.
T Consensus 45 ~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~G-s~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkE 123 (140)
T 1vdy_A 45 SIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKS-GSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHE 123 (140)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhC-CHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHH
Confidence 456888999999999999999999999999988653 34444444433333322210 1223679999988
Q ss_pred HHHHHHh
Q 006253 433 TLGRMFE 439 (653)
Q Consensus 433 ~l~~~~~ 439 (653)
++.-+..
T Consensus 124 l~~ll~d 130 (140)
T 1vdy_A 124 TISAIFS 130 (140)
T ss_dssp HHHHHTC
T ss_pred HHHHHhC
Confidence 8877654
No 149
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=59.30 E-value=16 Score=36.56 Aligned_cols=71 Identities=17% Similarity=0.284 Sum_probs=51.4
Q ss_pred hHHHHHHHhhcC----------CChhHHHHHHHHHHHHHhhhcccccchhhHhH--HHHHHHhcccCCCCCHHHHHHHHH
Q 006253 131 ELIGALLSNIHQ----------LPPHTKQATLETLGYICEEVSSDAVEQDHVNK--ILTAVVQGMNASESNNDVRLAATR 198 (653)
Q Consensus 131 ~l~~~l~~~l~~----------~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~--l~~~l~~~l~~~~~~~~vr~~a~~ 198 (653)
+++..|.+.+.+ .|+.+..-|+.=++.++++. |.. +..+.+ .-..+++.++ +++++||..|+.
T Consensus 395 ~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~-P~g--r~i~~~lg~K~~VM~Lm~--h~d~~Vr~~AL~ 469 (480)
T 1ho8_A 395 KIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELL-PES--IDVLDKTGGKADIMELLN--HSDSRVKYEALK 469 (480)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHC-TTH--HHHHHHHSHHHHHHHHTS--CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHC-cch--hHHHHHcCcHHHHHHHhc--CCCHHHHHHHHH
Confidence 577788888863 36777777888888888888 542 122222 3445677888 789999999999
Q ss_pred HHHHHHHh
Q 006253 199 ALYNALGF 206 (653)
Q Consensus 199 ~l~~~~~~ 206 (653)
|+..++.+
T Consensus 470 avQklm~~ 477 (480)
T 1ho8_A 470 ATQAIIGY 477 (480)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99997754
No 150
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=57.88 E-value=94 Score=27.38 Aligned_cols=117 Identities=13% Similarity=0.162 Sum_probs=69.2
Q ss_pred hhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCcc
Q 006253 375 NITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQG 454 (653)
Q Consensus 375 ~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~ 454 (653)
.+.++||.. ..-+..++... +.. -...+..|.+.+ ++.++.+...|+.+|..+.+.++..-.. .....+
T Consensus 17 ~~~~~dw~~----~leicd~i~~~-~~~----~k~a~r~l~krl-~~~n~~~~l~aL~Lle~~vkNcG~~f~~-eva~~~ 85 (220)
T 1dvp_A 17 LRLEPDWPS----ILLICDEINQK-DVT----PKNAFAAIKKKM-NSPNPHSSCYSLLVLESIVKNCGAPVHE-EVFTKE 85 (220)
T ss_dssp TCSSCCHHH----HHHHHHHHHTT-SSC----HHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHSHHHHHH-HHSSHH
T ss_pred CCCCcCHHH----HHHHHHhhcCC-CcC----HHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhccCHHHHH-HHHhHH
Confidence 445677854 34444444431 221 235567788889 9999999999999999999887531000 001223
Q ss_pred chHHHHHHHHHhccc--hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHH
Q 006253 455 NCQQIISVLLQSMKD--VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLT 511 (653)
Q Consensus 455 ~~~~il~~l~~~l~d--~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~ 511 (653)
++.. +...+.+ +..|+.++...+......+... .-.+++...+..|..
T Consensus 86 fl~~----l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~-----~~~~~i~~~y~~Lk~ 135 (220)
T 1dvp_A 86 NCEM----FSSFLESTPHENVRQKMLELVQTWAYAFRSS-----DKYQAIKDTMTILKA 135 (220)
T ss_dssp HHHH----HHHHHHHCSCHHHHHHHHHHHHHHHHHTTTC-----SSCCHHHHHHHHHHH
T ss_pred HHHH----HHHHhcCCCcHHHHHHHHHHHHHHHHHhccc-----hHHHHHHHHHHHHhh
Confidence 3333 3333332 5789999888888888776431 112345555555543
No 151
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=57.87 E-value=25 Score=31.34 Aligned_cols=76 Identities=9% Similarity=0.126 Sum_probs=52.6
Q ss_pred chHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchh-hHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhh
Q 006253 130 PELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQD-HVNKILTAVVQGMNASESNNDVRLAATRALYNALGFA 207 (653)
Q Consensus 130 ~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~ 207 (653)
.+.+..|...+.+.++.+...|+.+|..++++.. ..+-.+ ....++..+...++. ..++.|+..++..+..+...+
T Consensus 44 k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG-~~f~~eias~~fl~~l~~l~~~-~~~~~Vk~kil~li~~W~~~f 120 (226)
T 3zyq_A 44 KYAVNSIKKKVNDKNPHVALYALEVMESVVKNCG-QTVHDEVANKQTMEELKDLLKR-QVEVNVRNKILYLIQAWAHAF 120 (226)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHC-HHHHHHHSSHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcc-hHHHHhhccHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHh
Confidence 5788889999999999999999999999999983 322011 112222333333332 567899999999988876533
No 152
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=57.63 E-value=1.2e+02 Score=28.14 Aligned_cols=97 Identities=8% Similarity=0.145 Sum_probs=61.4
Q ss_pred CCCChHHHHHHHHHHHHHHhhhcC-----CCCCchHHHHHHHhhcC-------CChhHHHHHHHHHHHHHhhhcccccch
Q 006253 102 SSPAHDARSTASQVVAKVAGIELP-----HKQWPELIGALLSNIHQ-------LPPHTKQATLETLGYICEEVSSDAVEQ 169 (653)
Q Consensus 102 ~~~~~~vr~~~~~~l~~ia~~~~~-----~~~~~~l~~~l~~~l~~-------~~~~~~~~~l~~l~~l~~~~~~~~~~~ 169 (653)
...++.+|..++.+++.-.+...| ...||.++..++..+.+ ........-+.++..++... ..+..
T Consensus 80 ~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~--~~F~~ 157 (315)
T 3qml_C 80 ENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTS--EDLPI 157 (315)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCS--TTC--
T ss_pred ccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcCh--Hhhhh
Confidence 334568999999999988875422 13699999988877644 23355566677777776653 22323
Q ss_pred hhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHH
Q 006253 170 DHVNKILTAVVQGMNASESNNDVRLAATRALYNAL 204 (653)
Q Consensus 170 ~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~ 204 (653)
..+..|...+.. . ..++.++..++..+..+.
T Consensus 158 ~~m~~L~~ly~~--~--~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 158 YSTVVLQNVYER--N--NKDKQLQIKVLELISKIL 188 (315)
T ss_dssp CCHHHHHHHHHH--T--TTCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcc--C--CCCHHHHHHHHHHHHHHc
Confidence 334555544432 1 246788888888877765
No 153
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=57.60 E-value=25 Score=31.66 Aligned_cols=104 Identities=14% Similarity=0.190 Sum_probs=64.9
Q ss_pred hhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhh--hhcCChhH----HH
Q 006253 145 PHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQ--ANFSNDME----RD 218 (653)
Q Consensus 145 ~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~--~~~~~~~~----~~ 218 (653)
+..|-.++.+++.+++.-+++.+.---..+++|.++..+. ..+.--|..|.-.+..++..-. ........ ..
T Consensus 116 E~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime--~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~ 193 (268)
T 2fv2_A 116 EYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIME--SGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVA 193 (268)
T ss_dssp HHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHH--HSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHH
T ss_pred hhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHh--hccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHH
Confidence 5688999999999998754544411113568999998888 4667777778888877664210 00011010 11
Q ss_pred HHHH-HHHhhhcCCcHHHHHHHHHHHHHHHHHh
Q 006253 219 YIMR-VVCEATLSPEVKIRQAAFECLVAISSTY 250 (653)
Q Consensus 219 ~il~-~l~~~~~~~~~~~~~~~~~~l~~l~~~~ 250 (653)
.++. .+.....++++.+.+.++.|..++.++.
T Consensus 194 ~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~ 226 (268)
T 2fv2_A 194 MILGKMVLQLSKEPSARLLKHVVRCYLRLSDNP 226 (268)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCH
Confidence 2222 2233446688888888888888887753
No 154
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=57.39 E-value=76 Score=25.75 Aligned_cols=85 Identities=18% Similarity=0.154 Sum_probs=58.8
Q ss_pred HHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHH
Q 006253 116 VAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLA 195 (653)
Q Consensus 116 l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~ 195 (653)
+..+|.... ..-..++..+...+....+..+-.++.++..+++...+.+. ......+.+.+..... ..++.+|..
T Consensus 30 LT~~a~~~~--~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~-~~F~~~l~~~f~~~~~--~~d~~~r~k 104 (144)
T 1sz9_A 30 LTKLAEENI--SCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYT-IYFSRNLFNLYKRTYL--LVDNTTRTK 104 (144)
T ss_dssp HHHHHHHTG--GGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHH-HHHHTTHHHHHHHHHH--TSCHHHHHH
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHH-HHHHHHHHHHHHHHHH--hCCHHHHHH
Confidence 455554331 24568888888888888999999999999999999844332 2333445556666655 356788888
Q ss_pred HHHHHHHHHH
Q 006253 196 ATRALYNALG 205 (653)
Q Consensus 196 a~~~l~~~~~ 205 (653)
..+.+..+-.
T Consensus 105 ~~rL~~~W~~ 114 (144)
T 1sz9_A 105 LINMFKLWLN 114 (144)
T ss_dssp HHHHHHHHTS
T ss_pred HHHHHHHHhC
Confidence 8887776543
No 155
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=56.68 E-value=73 Score=25.29 Aligned_cols=67 Identities=6% Similarity=0.107 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc-hhhHHHHHHHHHHHH
Q 006253 406 LVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFL 484 (653)
Q Consensus 406 ~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~ 484 (653)
++...+...+..| +.....+...+.||+.. ..+-..++..+.+.+.. .+.-+....+.+..+
T Consensus 5 ~~e~~l~~~L~~L-~~s~~sI~~~s~w~l~h----------------~~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndI 67 (132)
T 4flb_A 5 ALESSLDRKFQSV-TNTMESIQGLSSWCIEN----------------KKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDV 67 (132)
T ss_dssp HHHHHHHHHHHHC-CSSHHHHHHHHHHHHHT----------------GGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-cccHHHHHHHHHHHHHh----------------HHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Confidence 3455566677778 77777788888877763 23445666666666664 566678888999999
Q ss_pred Hhccc
Q 006253 485 AQGFE 489 (653)
Q Consensus 485 ~~~~~ 489 (653)
+.+..
T Consensus 68 l~ns~ 72 (132)
T 4flb_A 68 IQNCK 72 (132)
T ss_dssp HHHTT
T ss_pred HHHhc
Confidence 98764
No 156
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=55.07 E-value=47 Score=26.54 Aligned_cols=62 Identities=16% Similarity=0.190 Sum_probs=42.0
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc-hhhHHHHHHHHHHHHHhccc
Q 006253 411 LNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFE 489 (653)
Q Consensus 411 ~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~~~~ 489 (653)
+...+..| +.....+...+.||+.. ..+-..++..+.+.+.. .+.-+....+.+..++.+..
T Consensus 9 l~~~L~~L-~~s~~sI~~~s~w~l~~----------------~~~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns~ 71 (135)
T 4fu3_A 9 LEKKLSEL-SNSQQSVQTLSLWLIHH----------------RKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSK 71 (135)
T ss_dssp HHHHHHHC-CSSTTHHHHHHHHHHHT----------------GGGHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHc-cccHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH
Confidence 34455667 77777888888888763 23445666666666664 45567788888988887754
No 157
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=53.34 E-value=1.2e+02 Score=26.88 Aligned_cols=129 Identities=9% Similarity=-0.038 Sum_probs=77.9
Q ss_pred HHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHH-HHHHHHHH
Q 006253 42 LAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTA-SQVVAKVA 120 (653)
Q Consensus 42 l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~-~~~l~~ia 120 (653)
++.-+.+ +..-+.|.+|+.+++...+ .++++....+. .++. ..++..+.-.. ..+++.+.
T Consensus 65 ~~~~L~~-~~~~E~r~~ai~~l~~~~k---------------~~~~~~l~~~~-~~l~--~~~nWd~~D~~a~~~~g~~~ 125 (232)
T 3jxy_A 65 IIRELWD-LPEREFQAAALDIMQKYKK---------------HINETHIPFLE-ELIV--TKSWWDSVDSIVPTFLGDIF 125 (232)
T ss_dssp HHHHHHT-SSBHHHHHHHHHHHHHTGG---------------GCCGGGHHHHH-HHHT--SSCCHHHHHHHTTTHHHHHH
T ss_pred HHHHHhc-CcHHHHHHHHHHHHHHHHH---------------hCCHHHHHHHH-HHHc--cCCChHHHHHhhHHHHHHHH
Confidence 3333443 3456799999888874322 23444444443 2333 23455555454 46777777
Q ss_pred hhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHH
Q 006253 121 GIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRAL 200 (653)
Q Consensus 121 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l 200 (653)
... |. .+.+.+.....|+++-.|+.|+.++- +... ......++..+...+. |++.-|+++.-.+|
T Consensus 126 ~~~-p~----~~~~~l~~W~~s~~~w~rR~ai~~~l-------~~~~-~~d~~~~~~~i~~~~~--d~~~yV~kAvgW~L 190 (232)
T 3jxy_A 126 LKH-PE----LISAYIPKWIASDNIWLQRAAILFQL-------KYKQ-KMDEELLFWIIGQLHS--SKEFFIQKAIGWVL 190 (232)
T ss_dssp HHC-GG----GGGGTHHHHHHSSCHHHHHHHHHTTT-------TCGG-GCCHHHHHHHHHHHTT--CCCHHHHHHHHHHH
T ss_pred HHC-HH----HHHHHHHHHhcCCchHHHHHHHHHHH-------HHHh-CCCHHHHHHHHHHhcC--CHHHHHHHHHHHHH
Confidence 653 31 25566788889999999988876641 1111 2233455666666666 78899999998888
Q ss_pred HHHH
Q 006253 201 YNAL 204 (653)
Q Consensus 201 ~~~~ 204 (653)
..+.
T Consensus 191 r~~~ 194 (232)
T 3jxy_A 191 REYA 194 (232)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 8744
No 158
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=52.27 E-value=91 Score=25.12 Aligned_cols=35 Identities=9% Similarity=0.156 Sum_probs=29.3
Q ss_pred HhHHHHHHHHHHHhhcCChhHHHHHHHhHHHhhHH
Q 006253 256 PYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDE 290 (653)
Q Consensus 256 ~~l~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 290 (653)
.....+++.+++.+++.++.++..|+.++.-++..
T Consensus 45 ~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~ 79 (140)
T 1vdy_A 45 SIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGK 79 (140)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHh
Confidence 34578999999999999999999999988888753
No 159
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=52.20 E-value=1e+02 Score=25.79 Aligned_cols=78 Identities=12% Similarity=0.114 Sum_probs=53.4
Q ss_pred hHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhc------CCcHHHHHHHHHHHHHH
Q 006253 173 NKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATL------SPEVKIRQAAFECLVAI 246 (653)
Q Consensus 173 ~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~------~~~~~~~~~~~~~l~~l 246 (653)
...+..+...++ ..++.++..|+..|-.++.-+...|..+.....+++-+..++. ..+..++..+++.+..+
T Consensus 49 k~A~ral~krl~--~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 126 (171)
T 1juq_A 49 QIAVRLLAHKIQ--SPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSW 126 (171)
T ss_dssp HHHHHHHHHHHT--CSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHH
Confidence 445556667777 6789999999999999887654433211111345666655553 24689999999999998
Q ss_pred HHHhHH
Q 006253 247 SSTYYE 252 (653)
Q Consensus 247 ~~~~~~ 252 (653)
...++.
T Consensus 127 ~~~f~~ 132 (171)
T 1juq_A 127 TMALPE 132 (171)
T ss_dssp HHHCTT
T ss_pred HHHcCC
Confidence 887654
No 160
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=51.88 E-value=32 Score=30.45 Aligned_cols=75 Identities=12% Similarity=0.113 Sum_probs=52.5
Q ss_pred chHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhh--HhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhh
Q 006253 130 PELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDH--VNKILTAVVQGMNASESNNDVRLAATRALYNALGFA 207 (653)
Q Consensus 130 ~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~--~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~ 207 (653)
.+.+..|...+.+.++.+...|+.+|..++++. ...+ ... ...++..+...+.+ ..+.+||..+++.+..+...+
T Consensus 41 k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNc-G~~f-~~eva~~~fl~~l~~l~~~-~~~~~Vk~kil~li~~W~~~f 117 (220)
T 1dvp_A 41 KNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNC-GAPV-HEEVFTKENCEMFSSFLES-TPHENVRQKMLELVQTWAYAF 117 (220)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-HHHH-HHHHSSHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc-CHHH-HHHHHhHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHHHh
Confidence 478888888899999999999999999999987 3323 111 12233333333332 467899999999988876544
No 161
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=51.46 E-value=1.3e+02 Score=27.86 Aligned_cols=68 Identities=15% Similarity=0.263 Sum_probs=41.0
Q ss_pred ChHHHHHHHHHHHHHHhh-----C-cc-hHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhccCC
Q 006253 16 DGTVRKQAEESLKQYQEQ-----N-LP-GFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSL 85 (653)
Q Consensus 16 d~~~r~~A~~~L~~~~~~-----~-~~-~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l 85 (653)
|-+....|...|.++.-. . .. +| ..|-.++++...++.+|..|+.++...++.++...+... ..|..+
T Consensus 41 D~~~le~aLD~L~ElSHDi~~G~KI~~~ef-~lL~nL~~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~-~~~p~f 115 (315)
T 3qml_C 41 DIARLEDSFDRIMEFAHDYKHGYKIITHEF-ALLANLSLNENLPLTLRELSTRVITSCLRNNPPVVEFIN-ESFPNF 115 (315)
T ss_dssp HHHHHHHHHHHHGGGTTSHHHHHHHHHHHH-HHHHHHHHCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHH-HHCTTH
T ss_pred cHHHHHHHHHHHHHhhhhHHhhhHHHhCcH-HHHHHHHhhccCChhHHHHHHHHHHHHHccCHHHHHHHH-HhChhH
Confidence 344556666666554221 0 01 22 233455665567889999999999999998876655333 356544
No 162
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=49.09 E-value=97 Score=28.97 Aligned_cols=117 Identities=8% Similarity=-0.012 Sum_probs=67.0
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc-hhhHHHHHHHHHHHHHhc
Q 006253 409 IALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQG 487 (653)
Q Consensus 409 ~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~~~~~ 487 (653)
.++..++..+..+..+..+..++.++.++...-.. ..........++..+...+.+ ++.+|..++..+-++.-.
T Consensus 147 ~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g-----~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~ 221 (304)
T 3ebb_A 147 QFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAG-----QKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVC 221 (304)
T ss_dssp HHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHH-----HHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchh-----HHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH
Confidence 34455556662234566677777777777653321 001123456777777766554 678888888888877755
Q ss_pred ccCCCCCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHh
Q 006253 488 FEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRC 537 (653)
Q Consensus 488 ~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~ 537 (653)
.... ..+ +-...++..+..+++..+ +.+....++-++|.++..
T Consensus 222 ~~~~----~~~-~~~~~ll~~l~~il~~~~--d~EalyR~LvALGtL~~~ 264 (304)
T 3ebb_A 222 FHKD----HNI-EGKAQCLSLISTILEVVQ--DLEATFRLLVALGTLISD 264 (304)
T ss_dssp HHHS----CCH-HHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHHHHHTT
T ss_pred Hhhc----CCc-hHHHHHHHHHHHHHhccC--CHHHHHHHHHHHHHHHhC
Confidence 4321 111 333445555555555433 344445688888888864
No 163
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=45.95 E-value=1.2e+02 Score=24.93 Aligned_cols=99 Identities=8% Similarity=0.022 Sum_probs=62.1
Q ss_pred CCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhc-CCChhHHHHHHHHHHHHHhhhcccccchhh--HhHHHHH
Q 006253 102 SSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIH-QLPPHTKQATLETLGYICEEVSSDAVEQDH--VNKILTA 178 (653)
Q Consensus 102 ~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~-~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~--~~~l~~~ 178 (653)
.+++...--.+|..+.. . + ..-.+.+..|...++ +.++.+...|+.+|..+++++ ...+ ... ...++.-
T Consensus 30 ~~~Dw~~~leicD~I~~----~-~-~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNc-G~~f-h~eva~~~fl~e 101 (157)
T 1elk_A 30 QSEDWALNMEICDIINE----T-E-EGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNC-GHRF-HVLVASQDFVES 101 (157)
T ss_dssp SSCCHHHHHHHHHHHHH----S-S-SHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHS-CHHH-HHHHTSHHHHHH
T ss_pred CCcCHHHHHHHHHHHhC----C-C-ccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh-CHHH-HHHHhhHHHHHH
Confidence 34555554455554332 2 2 122477888888887 578999999999999999998 4333 211 1234443
Q ss_pred -HHhcccC-CCCCHHHHHHHHHHHHHHHHhhh
Q 006253 179 -VVQGMNA-SESNNDVRLAATRALYNALGFAQ 208 (653)
Q Consensus 179 -l~~~l~~-~~~~~~vr~~a~~~l~~~~~~~~ 208 (653)
+...+.. .++...||..++..+..+...+.
T Consensus 102 ~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f~ 133 (157)
T 1elk_A 102 VLVRTILPKNNPPTIVHDKVLNLIQSWADAFR 133 (157)
T ss_dssp HTHHHHSTTTCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhccCCCCcHHHHHHHHHHHHHHHHHcC
Confidence 3344421 14567999999999998776443
No 164
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=45.15 E-value=1.3e+02 Score=24.79 Aligned_cols=78 Identities=12% Similarity=0.153 Sum_probs=49.8
Q ss_pred hHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHH-HHhhhc---CCcHHHHHHHHHHHHHHHH
Q 006253 173 NKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRV-VCEATL---SPEVKIRQAAFECLVAISS 248 (653)
Q Consensus 173 ~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~-l~~~~~---~~~~~~~~~~~~~l~~l~~ 248 (653)
...+..+..-++. ..++.++..|+..+..++.-+...|..+.....+++- +...+. ++...++..+++.+..+..
T Consensus 52 k~a~ral~krl~~-~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 52 KDALRAVKKRIVG-NKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 4455556666652 3678899999999999887654333211111345554 445442 2456899999998888887
Q ss_pred HhH
Q 006253 249 TYY 251 (653)
Q Consensus 249 ~~~ 251 (653)
.+.
T Consensus 131 ~f~ 133 (157)
T 1elk_A 131 AFR 133 (157)
T ss_dssp HHT
T ss_pred HcC
Confidence 653
No 165
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=42.27 E-value=85 Score=28.42 Aligned_cols=99 Identities=14% Similarity=0.146 Sum_probs=62.1
Q ss_pred CCChhHHHHHHHHHhhhcchhh-hhhHHHhhhhccCCChHHHHHHHHHHHHhc----CC----CChHHHHHHHHHHHHHH
Q 006253 50 EKPVESRKLAGLILKNALDAKE-QHRKFELVQRWLSLDSSVKAQIKSFILKTL----SS----PAHDARSTASQVVAKVA 120 (653)
Q Consensus 50 ~~~~~~r~~a~~~l~~~i~~~~-~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l----~~----~~~~vr~~~~~~l~~ia 120 (653)
+.++..+++++.++.|.+.... . ..+- .+.+ ++..+++.+ .+ ++..+|.+++..+-.++
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g-------~~l~-~~~~----~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~a 168 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWG-------VKLL-ESNQ----VYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYS 168 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTH-------HHHH-TSHH----HHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHcccCCchH-------HHHH-hcch----hHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHH
Confidence 3478999999999999887532 1 1111 2222 344445443 32 24678888888888877
Q ss_pred hhhcCCCCCchHHHHHHHhhcC---------CChhHHHHHHHHHHHHHh
Q 006253 121 GIELPHKQWPELIGALLSNIHQ---------LPPHTKQATLETLGYICE 160 (653)
Q Consensus 121 ~~~~~~~~~~~l~~~l~~~l~~---------~~~~~~~~~l~~l~~l~~ 160 (653)
........-.++...+.+++.. .+++....++.+++.++.
T Consensus 169 v~~~~~~~~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~ 217 (253)
T 3gae_A 169 ALVTKGNSDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 217 (253)
T ss_dssp HHHHTSCSCTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHhhccchHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHh
Confidence 6543211225666666666542 367788889999998875
No 166
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=41.91 E-value=21 Score=35.62 Aligned_cols=74 Identities=12% Similarity=0.039 Sum_probs=48.1
Q ss_pred HHHHHHHHhcC--------CCChhHHHHHHHHHhhhcchhhhhhHHHhhhhccCCChHHHHHHHHHHHHhcCCCChHHHH
Q 006253 39 LLSLAGELVND--------EKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARS 110 (653)
Q Consensus 39 ~~~l~~il~~~--------~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~ 110 (653)
+..|++++.+. +.++.+--.|+.-++.+++.++.-+. --.+-..|..+++.|.++++.||.
T Consensus 397 lk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~-----------i~~~lg~K~~VM~Lm~h~d~~Vr~ 465 (480)
T 1ho8_A 397 FRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESID-----------VLDKTGGKADIMELLNHSDSRVKY 465 (480)
T ss_dssp HHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHH-----------HHHHHSHHHHHHHHTSCSSHHHHH
T ss_pred HHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhH-----------HHHHcCcHHHHHHHhcCCCHHHHH
Confidence 34566666521 22455555666666666655432110 012334688999999999999999
Q ss_pred HHHHHHHHHHhhh
Q 006253 111 TASQVVAKVAGIE 123 (653)
Q Consensus 111 ~~~~~l~~ia~~~ 123 (653)
.|-.|+..+..+.
T Consensus 466 ~AL~avQklm~~~ 478 (480)
T 1ho8_A 466 EALKATQAIIGYT 478 (480)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhc
Confidence 9999999987654
No 167
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=40.37 E-value=4.8e+02 Score=30.04 Aligned_cols=116 Identities=13% Similarity=0.125 Sum_probs=77.8
Q ss_pred hHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccc-h-hhHHHHHHHHH
Q 006253 404 VPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-V-PNVAEKACGAL 481 (653)
Q Consensus 404 ~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~-~~v~~~a~~al 481 (653)
..+++.++...-..+ .+.++.|+..+...+..+.+.+. .-+-+.++..|+.++.+ + ..| ..|...+
T Consensus 395 ~~~f~siL~La~~Ll-~S~~~~v~~Fg~~lY~~lF~~fd----------~~~qqeVl~~Lv~hi~sg~~~eV-d~ALdvL 462 (1323)
T 3s4w_B 395 KDICPSILLLAQTLF-HSQDQRIILFGSLLYKYAFKFFD----------TYCQQEVVGALVTHVCSGTEAEV-DTALDVL 462 (1323)
T ss_dssp TTSHHHHHHHHHHHH-TSSSHHHHHHHHHHHHHHHHSSC----------HHHHHHHHHHHHHHHHHCCHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHhcc----------chhHHHHHHHHHhhhcCCCcHHH-HHHHHHH
Confidence 345666666666677 88999999999998888887762 23456788888888774 3 444 3466667
Q ss_pred HHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhcccc
Q 006253 482 YFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDE 541 (653)
Q Consensus 482 ~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 541 (653)
..++... +..+.||.. ++..++..+.+-. ...+| .++..+..++-..+..
T Consensus 463 ~~L~~~~------~~~l~~~a~-~l~giLD~l~~l~--~~QiR-klf~iL~~laf~~~~~ 512 (1323)
T 3s4w_B 463 LELIVLN------ASAMRLNAA-FVKGILDYLENMS--PQQIR-KIFCILSTLAFSQQPG 512 (1323)
T ss_dssp HHHHHHC------HHHHHHTHH-HHHGGGGGGGGCC--HHHHH-HHHHHHHHHHHHHCSS
T ss_pred HHHHhcC------HHHHhHHHH-HHHHHHHhhcCCC--HHHHH-HHHHHHHHHHcCCCCC
Confidence 7766542 334555433 5566666666555 46777 6899999988655543
No 168
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=37.56 E-value=1.6e+02 Score=23.78 Aligned_cols=57 Identities=12% Similarity=0.275 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhcccccH----HHHHHHHHHHHHHHHH
Q 006253 500 PFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETA----PMVMQLVPLIMMELHQ 559 (653)
Q Consensus 500 ~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~----~~~~~l~~~l~~~l~~ 559 (653)
.+...|+..+.+.+.... +.-|..++..+.++++..+.... +|...+.+.+.+.+..
T Consensus 38 ~~~~~IV~~~~~~i~k~~---~~~KL~~LYL~DsIvrn~~~k~~~~~~~f~~~F~~~L~~~f~~ 98 (145)
T 3d9j_A 38 KFYKHVVQSVEKFIQKCK---PEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQN 98 (145)
T ss_dssp GGHHHHHHHHHHHHHHSC---GGGHHHHHHHHHHHHHHHHHHHCTTTCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCC---ccceeehhhhhHHHHHHhhhhcCCccccHHHHHHHHHHHHHHH
Confidence 467788888877776654 34566899999999998886211 3444444444444443
No 169
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=37.47 E-value=1.6e+02 Score=24.13 Aligned_cols=92 Identities=7% Similarity=0.049 Sum_probs=58.1
Q ss_pred chHHHHHHHHHhcc-c-hhhHHHHHHHHHHHHHhcccCCCCCCCCCchhH--HHHHHH-HHHhccccccchhchHHHHHH
Q 006253 455 NCQQIISVLLQSMK-D-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFF--QEIVQA-LLTVTHREDAGESRLRTAAYE 529 (653)
Q Consensus 455 ~~~~il~~l~~~l~-d-~~~v~~~a~~al~~~~~~~~~~~~~~~~l~~~l--~~i~~~-L~~~l~~~~~~~~~~~~~~~~ 529 (653)
.-...+..+...+. . ++.++..|...+..++++++.. +...+ ..++.. |.+++.........++..+++
T Consensus 50 ~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~------fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~ 123 (152)
T 3rru_A 50 GPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPS------FQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILN 123 (152)
T ss_dssp HHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHH------HHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHH------HHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence 44566777777776 2 6788888999999999998641 22111 244543 555554332113468999999
Q ss_pred HHHHHHHhccccc-HHHHHHHHHH
Q 006253 530 TLNEVVRCSTDET-APMVMQLVPL 552 (653)
Q Consensus 530 ~l~~l~~~~~~~~-~~~~~~l~~~ 552 (653)
.+..-....+..- .+++..++..
T Consensus 124 li~~Wa~~F~~~p~l~~i~~~Y~~ 147 (152)
T 3rru_A 124 FIKTWSQGFPGGVDVSEVKEVYLD 147 (152)
T ss_dssp HHHHHHTCCSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchHHHHHHHH
Confidence 9999988777542 3455544433
No 170
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=36.20 E-value=2.2e+02 Score=24.90 Aligned_cols=129 Identities=8% Similarity=-0.056 Sum_probs=80.9
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhccCCChHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHH
Q 006253 41 SLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLS-SPAHDARSTASQVVAKV 119 (653)
Q Consensus 41 ~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~-~~~~~vr~~~~~~l~~i 119 (653)
.++.-+.. +..-+.|.+|+.++...-.. +.++.... +-..+. -++..+.-..|.+++.+
T Consensus 58 ~~~~~L~~-s~~~E~r~la~~~l~~~~~~---------------~~~~~l~~----~~~~l~~~~nWd~~D~~a~~~~~~ 117 (220)
T 2b6c_A 58 QEIEAYYQ-KTEREYQYVAIDLALQNVQR---------------FSLEEVVA----FKAYVPQKAWWDSVDAWRKFFGSW 117 (220)
T ss_dssp HHHHHHHT-SSSHHHHHHHHHHHHHTGGG---------------CCHHHHHH----GGGGTTTTCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHc-CchhHHHHHHHHHHHHHHhh---------------CCHHHHHH----HHHHhccCCcHHHHHHHHHHHHHH
Confidence 34444443 34688999999988764321 22222211 112232 34567777777777777
Q ss_pred HhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHH
Q 006253 120 AGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRA 199 (653)
Q Consensus 120 a~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~ 199 (653)
+... | ..+.+.+.....|++.-+|+.|+.++- +- ........+++.+...+. |++.-|+++.-.+
T Consensus 118 ~~~~-~----~~~~~~i~~W~~s~~~w~rR~ai~~~l-------~~-~~~~~~~~~~~i~~~~~~--d~~~yV~kavgW~ 182 (220)
T 2b6c_A 118 VALH-L----TELPTIFALFYGAENFWNRRVALNLQL-------ML-KEKTNQDLLKKAIIYDRT--TEEFFIQKAIGWS 182 (220)
T ss_dssp HHHS-G----GGHHHHHHHHTTCSSHHHHHHHHHTTT-------TC-GGGCCHHHHHHHHHHTTT--CCCHHHHHHHHHH
T ss_pred HHHC-h----HHHHHHHHHHHcCCCHHHHHHHHHHHH-------HH-HHCCCHHHHHHHHHHhCC--ChHHHHHHHHHHH
Confidence 6542 3 236678899999999999988887541 11 113344666777776777 8889999999888
Q ss_pred HHHHH
Q 006253 200 LYNAL 204 (653)
Q Consensus 200 l~~~~ 204 (653)
|..+.
T Consensus 183 Lr~~~ 187 (220)
T 2b6c_A 183 LRQYS 187 (220)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 88744
No 171
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=33.77 E-value=1.9e+02 Score=23.38 Aligned_cols=77 Identities=14% Similarity=0.054 Sum_probs=55.0
Q ss_pred chhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhc
Q 006253 364 IVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVN-IALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLH 442 (653)
Q Consensus 364 ~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~-~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~ 442 (653)
..+.++..+.+.+....+..|-.+++.+.+|+..++. .+...+. .+.+.+...+ ...++.+|.....++.-+-+..+
T Consensus 40 ~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~-~y~~~F~~~l~~~f~~~~-~~~d~~~r~k~~rL~~~W~~~~~ 117 (144)
T 1sz9_A 40 CAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGS-PYTIYFSRNLFNLYKRTY-LLVDNTTRTKLINMFKLWLNPND 117 (144)
T ss_dssp GHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCT-THHHHHHTTHHHHHHHHH-HTSCHHHHHHHHHHHHHHTSGGG
T ss_pred HHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHhCccc
Confidence 4567777777777777788899999999999998753 3333333 3444444555 55678899999999888887754
No 172
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=32.90 E-value=76 Score=30.46 Aligned_cols=110 Identities=16% Similarity=0.178 Sum_probs=68.3
Q ss_pred hHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhcc--CCChHHHHHHHHHHHHhcCC--------CCh
Q 006253 37 GFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWL--SLDSSVKAQIKSFILKTLSS--------PAH 106 (653)
Q Consensus 37 ~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~--~l~~~~~~~i~~~ll~~l~~--------~~~ 106 (653)
+++..++....+ +.++..+++++.++.|.+... .|. .+.. +.++..+++.+.+ .+.
T Consensus 198 ~~l~~li~~~~~-~~~~~n~MltlR~laNlF~~~----------~~g~~ll~~---~~~~~~i~~~i~~~~~~~~~~~nk 263 (362)
T 3l3f_X 198 SDIKDYIEEGLG-NKNITLTMLTVRILVNCFNNE----------NWGVKLLES---NQVYKSIFETIDTEFSQASAKQSQ 263 (362)
T ss_dssp GGGHHHHHHHTT-CSSHHHHHHHHHHHHHHTTCT----------TTHHHHHTS---HHHHTTHHHHSCSCCSSCCHHHHH
T ss_pred HHHHHHHHHhcC-CCChhHHHHHHHHHHHhccCc----------chHHHHHhc---chhHHHHHHHHHHHhhhcccCCCc
Confidence 444445544444 458899999999999988653 111 0111 1234455554422 235
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhc---------CCChhHHHHHHHHHHHHHh
Q 006253 107 DARSTASQVVAKVAGIELPHKQWPELIGALLSNIH---------QLPPHTKQATLETLGYICE 160 (653)
Q Consensus 107 ~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~---------~~~~~~~~~~l~~l~~l~~ 160 (653)
.+|.+++..+-.++........-.++...+.+++. ..+++....++.+++.++.
T Consensus 264 Nl~IA~ATL~lNlAv~~~~~~~~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~ 326 (362)
T 3l3f_X 264 NLAIAVSTLIFNYSALVTKGNSDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 326 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 78888888887777654321122567777777766 2477888899999998874
No 173
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=31.90 E-value=1e+02 Score=30.18 Aligned_cols=98 Identities=17% Similarity=0.210 Sum_probs=63.0
Q ss_pred CCChhHHHHHHHHHhhhcchhhhhhHHHhhhhcc--CCChHHHHHHHHHHHHhcCC--------CChHHHHHHHHHHHHH
Q 006253 50 EKPVESRKLAGLILKNALDAKEQHRKFELVQRWL--SLDSSVKAQIKSFILKTLSS--------PAHDARSTASQVVAKV 119 (653)
Q Consensus 50 ~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~--~l~~~~~~~i~~~ll~~l~~--------~~~~vr~~~~~~l~~i 119 (653)
+.++..+++++.++.|.+... .|. .+.. ..+++.+++.+.+ .+..+|.+++..+-.+
T Consensus 273 ~~~~an~MltlR~laNlF~~~----------~~g~~ll~~---~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNl 339 (425)
T 3pst_A 273 NKNITLTMLTVRILVNCFNNE----------NWGVKLLES---NQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNY 339 (425)
T ss_dssp CSSHHHHHHHHHHHHHHTTCT----------TTHHHHHTS---HHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHhcCCc----------chHHHHhhC---chhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHH
Confidence 458899999999999988643 111 0111 1245555655432 2357888888888877
Q ss_pred HhhhcCCCCCchHHHHHHHhhc---------CCChhHHHHHHHHHHHHHh
Q 006253 120 AGIELPHKQWPELIGALLSNIH---------QLPPHTKQATLETLGYICE 160 (653)
Q Consensus 120 a~~~~~~~~~~~l~~~l~~~l~---------~~~~~~~~~~l~~l~~l~~ 160 (653)
+........-.++...+.+++. ..+++....++.+++.++.
T Consensus 340 Av~~~~~~~~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~ 389 (425)
T 3pst_A 340 SALVTKGNSDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 389 (425)
T ss_dssp HHHHHHSCSCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccchHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 7654321122567777777665 2477888889999998874
No 174
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=31.43 E-value=3.2e+02 Score=25.37 Aligned_cols=115 Identities=9% Similarity=0.089 Sum_probs=66.1
Q ss_pred chHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhhc-ccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhh
Q 006253 130 PELIGALLSNIHQ-LPPHTKQATLETLGYICEEVS-SDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFA 207 (653)
Q Consensus 130 ~~l~~~l~~~l~~-~~~~~~~~~l~~l~~l~~~~~-~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~ 207 (653)
..++..+...+.+ ..+..+-.+++++..++..-. .+.+ ..+...+++.+...+. +++..+|.++...+.++..+.
T Consensus 146 ~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l-~~~~~~il~~~~~~~~--~~nknl~iA~ATl~~NlAv~~ 222 (304)
T 3ebb_A 146 AQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLM-MSQRESLMSHAIELKS--GSNKNIHIALATLALNYSVCF 222 (304)
T ss_dssp HHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHH-HHTHHHHHHHHHGGGS--SCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHHHH-HHHHHHHHHHHHHHhc--CCChhHHHHHHHHHHHHHHHH
Confidence 3455555555543 244455555555555544321 1122 2345677777777765 578899999999999987765
Q ss_pred hhhcCChhHHHHHHHHHHhhhc-CCcHHHHHHHHHHHHHHHH
Q 006253 208 QANFSNDMERDYIMRVVCEATL-SPEVKIRQAAFECLVAISS 248 (653)
Q Consensus 208 ~~~~~~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~l~~l~~ 248 (653)
.+... ......++..+..++. ..|.|..-.++.+|+.++.
T Consensus 223 ~~~~~-~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~ 263 (304)
T 3ebb_A 223 HKDHN-IEGKAQCLSLISTILEVVQDLEATFRLLVALGTLIS 263 (304)
T ss_dssp HHSCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred hhcCC-chHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHh
Confidence 43221 1223445555555553 3566666666666666664
No 175
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=30.41 E-value=2.2e+02 Score=25.66 Aligned_cols=136 Identities=8% Similarity=0.062 Sum_probs=74.7
Q ss_pred ccHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCC-CC-cchHH--HHHHHHHHHHHh
Q 006253 343 WNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPS-PE-KLVPL--VNIALNFMLTAL 418 (653)
Q Consensus 343 ~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~-~~-~~~~~--l~~l~~~ll~~l 418 (653)
|..|-.+.+.+..++...+. ...+..++...+.+.++..+--++.+++.+..+.. .. .+... ...++..+...+
T Consensus 68 WP~~fP~lDllRl~~~~~~~--~~~l~~~l~~~~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~ 145 (253)
T 3gae_A 68 WEIKTPAYDIVRLIVKKLPY--SSDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEF 145 (253)
T ss_dssp CSCCHHHHHHHHHHGGGCSC--GGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCC
T ss_pred CCccchHHHHHHHHHcCCch--HHHHHHHHHHhcCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHh
Confidence 44455566666655544431 22333444444544556677778888887776531 01 11111 223333333333
Q ss_pred cCC----CchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHh---c---cchhhHHHHHHHHHHHHHh
Q 006253 419 MQD----PNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQS---M---KDVPNVAEKACGALYFLAQ 486 (653)
Q Consensus 419 ~~d----~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~---l---~d~~~v~~~a~~al~~~~~ 486 (653)
.+ ++..+|-++..++-+++-...... ...+....++..+.+. . +++.+...++..|+++++.
T Consensus 146 -~~~~~~~~~nl~iA~ATl~~N~av~~~~~~-----~~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~ 217 (253)
T 3gae_A 146 -SQASAKQSQNLAIAVSTLIFNYSALVTKGN-----SDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 217 (253)
T ss_dssp -TTCCHHHHHHHHHHHHHHHHHHHHHHHTSC-----SCTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHH
T ss_pred -hhcccCCchhHHHHHHHHHHHHHHHHhhcc-----chHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHh
Confidence 22 377899999999999988765321 1233444555544432 1 2255677888889998884
No 176
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=29.88 E-value=59 Score=29.00 Aligned_cols=88 Identities=13% Similarity=0.156 Sum_probs=50.6
Q ss_pred cccHhhhH-HHHHHHHHhhcCCCchhchHHHHHhhhcCcc-hhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhc
Q 006253 342 AWNIAMAG-GTCLGLVARTVGDDIVPLVMPFVEENITKQE-WRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALM 419 (653)
Q Consensus 342 ~~~~r~~a-~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~-~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ll~~l~ 419 (653)
.|.+.... ..+++.+....++. +.+.+.....|++ |..|.|....+.... .. ....+++.+...+
T Consensus 109 nWd~~D~~a~~~~g~~~~~~p~~----~~~~l~~W~~s~~~w~rR~ai~~~l~~~~----~~----d~~~~~~~i~~~~- 175 (232)
T 3jxy_A 109 WWDSVDSIVPTFLGDIFLKHPEL----ISAYIPKWIASDNIWLQRAAILFQLKYKQ----KM----DEELLFWIIGQLH- 175 (232)
T ss_dssp CHHHHHHHTTTHHHHHHHHCGGG----GGGTHHHHHHSSCHHHHHHHHHTTTTCGG----GC----CHHHHHHHHHHHT-
T ss_pred ChHHHHHhhHHHHHHHHHHCHHH----HHHHHHHHhcCCchHHHHHHHHHHHHHHh----CC----CHHHHHHHHHHhc-
Confidence 47554432 24444444443332 3345556777776 555555443322111 11 1234455666677
Q ss_pred CCCchHHHHHHHHHHHHHHhhhc
Q 006253 420 QDPNNHVKDTTAWTLGRMFEFLH 442 (653)
Q Consensus 420 ~d~~~~vr~~a~~~l~~~~~~~~ 442 (653)
+|++..|+.+..|+|..++...+
T Consensus 176 ~d~~~yV~kAvgW~Lr~~~k~~p 198 (232)
T 3jxy_A 176 SSKEFFIQKAIGWVLREYAKTNP 198 (232)
T ss_dssp TCCCHHHHHHHHHHHHHHTTTCH
T ss_pred CCHHHHHHHHHHHHHHHHHhhCH
Confidence 99999999999999999987643
No 177
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=29.37 E-value=1.4e+02 Score=28.96 Aligned_cols=129 Identities=10% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhCcchHHHHHHHHHh---------cCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhccCCChH
Q 006253 18 TVRKQAEESLKQYQEQNLPGFLLSLAGELV---------NDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSS 88 (653)
Q Consensus 18 ~~r~~A~~~L~~~~~~~~~~~~~~l~~il~---------~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~ 88 (653)
..|.+...++.+|. . +-+..|+.++. ....+....+.+..+||.+++ ..+..-.--
T Consensus 94 ~Lrt~~~sWV~~F~-~---~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN-----------~~~G~~~vl 158 (383)
T 3eg5_B 94 SLTSHPVSWVQTFG-A---EGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-----------NKFGIKTML 158 (383)
T ss_dssp HHHHSCHHHHHHHH-H---HHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTS-----------SHHHHHHHH
T ss_pred HHhhCccHHHHHHH-H---ccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhc-----------chhhHHHHH
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCC-------------------CCchHHHHHHHhhcCCChhHHH
Q 006253 89 VKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHK-------------------QWPELIGALLSNIHQLPPHTKQ 149 (653)
Q Consensus 89 ~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~-------------------~~~~l~~~l~~~l~~~~~~~~~ 149 (653)
........+..++.++.+.+|..+.++++.++.+..|.+ +|..++..+... .+...+.
T Consensus 159 ~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~---~~~e~~~ 235 (383)
T 3eg5_B 159 ETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG---TSIALKV 235 (383)
T ss_dssp TCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT---SCHHHHH
T ss_pred cChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHcc---CcHHHHH
Q ss_pred HHHHHHHHHHhhhccc
Q 006253 150 ATLETLGYICEEVSSD 165 (653)
Q Consensus 150 ~~l~~l~~l~~~~~~~ 165 (653)
+++..+..++... ++
T Consensus 236 ~~m~lIN~li~~~-~d 250 (383)
T 3eg5_B 236 GCLQLINALITPA-EE 250 (383)
T ss_dssp HHHHHHHHHHTTC-CC
T ss_pred HHHHHHHHHHcCC-CC
No 178
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=28.89 E-value=2.2e+02 Score=22.65 Aligned_cols=104 Identities=11% Similarity=-0.077 Sum_probs=68.5
Q ss_pred cCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhh
Q 006253 83 LSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEV 162 (653)
Q Consensus 83 ~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~ 162 (653)
..++.+....+...|+.-|.+.+..+...++..+..+ + ..++|.+.+.+.+.|..=+. .++..+...+
T Consensus 22 ~~~~~~~i~p~lp~LL~WLQD~NWPvA~~i~~~L~~~-----~----~~l~p~I~~vl~s~D~~W~y---wil~~lv~~~ 89 (134)
T 3ut4_A 22 CKLIDNEIEPIIFDLLKWLQDYNWPIAKDILPVVVLH-----Q----SIAMPHILTILQGNDIMWKY---WVIKLMIPYL 89 (134)
T ss_dssp TTCCHHHHHHHHHHHHGGGSCTTSTTHHHHHHHHHHT-----H----HHHHHHHHHHHHSSCHHHHH---HHHHHHGGGC
T ss_pred HhCCHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHc-----c----HhhHHHHHHHHHcCChHHHH---HHHHHHHHcC
Confidence 4567788888999999999999987777777766653 2 47888888888887765443 3444444444
Q ss_pred cccccchhhHhHHHHHHHhcccCC---CCCHHHHHHHHHHHHHH
Q 006253 163 SSDAVEQDHVNKILTAVVQGMNAS---ESNNDVRLAATRALYNA 203 (653)
Q Consensus 163 ~~~~~~~~~~~~l~~~l~~~l~~~---~~~~~vr~~a~~~l~~~ 203 (653)
+. .....+.+-+.+...++ +...++...|-+.|..+
T Consensus 90 -~~----~~~~~l~~eL~rl~~~pt~~E~~eev~e~A~~iL~~~ 128 (134)
T 3ut4_A 90 -IY----PNKQLVKSELERLSSLEIINEDIREIVNLSKDYLHFY 128 (134)
T ss_dssp -CH----HHHHHHHHHHHHHHTCCCSSGGGHHHHHHHHHHHHHH
T ss_pred -CH----HHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHH
Confidence 22 33445555555555432 34566777777776653
No 179
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=28.13 E-value=1.9e+02 Score=23.36 Aligned_cols=90 Identities=14% Similarity=0.139 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhccc------ccchhhH-hHHHHHHH
Q 006253 108 ARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSD------AVEQDHV-NKILTAVV 180 (653)
Q Consensus 108 vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~------~~~~~~~-~~l~~~l~ 180 (653)
+.+.....|+.+|.... .....++..+...+....+..|-.++.++..|++....+ .+ .+.+ ..+.+.+.
T Consensus 21 ~S~~~I~~LT~~a~~~~--~~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k~~~~~~~f-~~~F~~~L~~~f~ 97 (145)
T 3d9j_A 21 ISKAKMTQITKAAIKAI--KFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVF-APRFSNNIISTFQ 97 (145)
T ss_dssp CCHHHHHHHHHHHHHTG--GGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHCTTTCSH-HHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhhcCCccccH-HHHHHHHHHHHHH
Confidence 33444455566665432 245678888888888788899999999999999987321 22 2223 33444443
Q ss_pred hcccCCCCCHHHHHHHHHHHHHH
Q 006253 181 QGMNASESNNDVRLAATRALYNA 203 (653)
Q Consensus 181 ~~l~~~~~~~~vr~~a~~~l~~~ 203 (653)
.... ..++.|....+.+.-+
T Consensus 98 ~~~~---~~~~~r~kl~rLl~iW 117 (145)
T 3d9j_A 98 NLYR---CPGDDKSKIVRVLNLW 117 (145)
T ss_dssp HHTS---SCGGGHHHHHHHHHHH
T ss_pred HHHh---CCHHHHHHHHHHHHHh
Confidence 3333 2266776666665553
No 180
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=26.44 E-value=5.6e+02 Score=26.54 Aligned_cols=151 Identities=9% Similarity=0.023 Sum_probs=0.0
Q ss_pred CchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhc-----ccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHH
Q 006253 129 WPELIGALLSNIHQLPPHTKQATLETLGYICEEVS-----SDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNA 203 (653)
Q Consensus 129 ~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~-----~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~ 203 (653)
|+.-+..+...++++.......++..+..+..... ...++......+.+.+...+.. .++..+|..|+.++..+
T Consensus 315 f~~~l~~l~~lL~~~~~~~~~kGL~Ll~~ll~~l~~~sl~~~~ld~~~~~~~~q~L~~v~~~-~P~~~lR~~a~~vl~~~ 393 (596)
T 4f52_E 315 LQFNMGHIEVFLQRTEESVISKGLELLENSLLRIEDNSLLYQYLEIKSFLTVPQGLVKVMTL-CPIETLRKKSLAMLQLY 393 (596)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSSCTTCBCGGGGGSHHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCchHHHHhHHHHHHHHHHhccCccCChhhhchhhHHHHHHHHHHHHHH-CCcHHHHHHHHHHHHHH
Q ss_pred HHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHh-------HHhhHHhHHHHHHHHHHHhhcCChhH
Q 006253 204 LGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTY-------YEKLAPYIQDIFNITAKAVREDEEPV 276 (653)
Q Consensus 204 ~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~-------~~~~~~~l~~l~~~~~~~~~~~~~~~ 276 (653)
+.-.+. ..+-.++..++.-. ..+.++..++..+..-+... +-+..+.+-.++..++..-+....+.
T Consensus 394 I~~~~~-----e~R~~iL~~LL~~~--~~~~v~~~lI~~~KdeI~~al~~~~~~~~F~~~~l~~ll~~vl~lp~g~~tDL 466 (596)
T 4f52_E 394 INKLDS-----QGKYTLFRCLLNTS--NHSGVEAFIIQNIKNQIDMSLKRTRNNKWFTGPQLISLLDLVLFLPEGAETDL 466 (596)
T ss_dssp HHHBCH-----HHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHTCCC----CTTTSHHHHHHHHHHSCCTTTTTCCT
T ss_pred HHhCCh-----HHHHHHHHHHHhcC--CChHHHHHHHHHHHHHHHHHHhcCCCCCccccHHHHHHHHHHhcCCCCCCCch
Q ss_pred HHHHHHhHHHh
Q 006253 277 ALQAIEFWSSV 287 (653)
Q Consensus 277 ~~~a~~~~~~~ 287 (653)
...+-..+.++
T Consensus 467 ~~~~d~I~aaL 477 (596)
T 4f52_E 467 LQNSDRIMASL 477 (596)
T ss_dssp TTSHHHHHHHH
T ss_pred hhhhHHHHHHH
No 181
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=26.04 E-value=8.1e+02 Score=28.26 Aligned_cols=98 Identities=12% Similarity=0.044 Sum_probs=62.4
Q ss_pred hcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhcccccchhhHhHHHHHH
Q 006253 100 TLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAV 179 (653)
Q Consensus 100 ~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~l~~~l 179 (653)
++.+.++.++.-++.....+.... ....-.+++..|...+.+++......|+.+|..++... +..+ .+ ...++..+
T Consensus 408 Ll~S~~~~v~~Fg~~lY~~lF~~f-d~~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~-~~~l-~~-~a~~l~gi 483 (1323)
T 3s4w_B 408 LFHSQDQRIILFGSLLYKYAFKFF-DTYCQQEVVGALVTHVCSGTEAEVDTALDVLLELIVLN-ASAM-RL-NAAFVKGI 483 (1323)
T ss_dssp HHTSSSHHHHHHHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC-HHHH-HH-THHHHHGG
T ss_pred HHhCCCHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhcC-HHHH-hH-HHHHHHHH
Confidence 455677889888888877777754 21123688999999888888877888999999998865 5544 23 22334444
Q ss_pred HhcccCCCCCHHHHHHHHHHHHHH
Q 006253 180 VQGMNASESNNDVRLAATRALYNA 203 (653)
Q Consensus 180 ~~~l~~~~~~~~vr~~a~~~l~~~ 203 (653)
+..+.+ =....+|+ ....|..+
T Consensus 484 LD~l~~-l~~~QiRk-lf~iL~~l 505 (1323)
T 3s4w_B 484 LDYLEN-MSPQQIRK-IFCILSTL 505 (1323)
T ss_dssp GGGGGG-CCHHHHHH-HHHHHHHH
T ss_pred HHhhcC-CCHHHHHH-HHHHHHHH
Confidence 444442 12234554 35555443
No 182
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=20.44 E-value=3.1e+02 Score=21.44 Aligned_cols=97 Identities=5% Similarity=0.073 Sum_probs=58.1
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhccc---ccchh
Q 006253 94 KSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSD---AVEQD 170 (653)
Q Consensus 94 ~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~l~~~~~~~---~~~~~ 170 (653)
.+..++.|+.....|.....-++... ..-.+++..+.+.+....+..|-..+.++..++...... .+ ..
T Consensus 10 l~~~L~~L~~s~~sI~~~s~w~l~h~-------~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~~f-~~ 81 (132)
T 4flb_A 10 LDRKFQSVTNTMESIQGLSSWCIENK-------KHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIF-RE 81 (132)
T ss_dssp HHHHHHHCCSSHHHHHHHHHHHHHTG-------GGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCTHH-HH
T ss_pred HHHHHHHCcccHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccChHHH-HH
Confidence 34455666655456665554444321 134678888888888888889999999999999887322 12 23
Q ss_pred hHhHHHHHHHhcccCCCCCHHHHHHHHHHHHH
Q 006253 171 HVNKILTAVVQGMNASESNNDVRLAATRALYN 202 (653)
Q Consensus 171 ~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~ 202 (653)
.+...++.++.... + ++.|....+++.-
T Consensus 82 ~f~~~l~~~~~~~~--~--~~~~~kl~~ll~i 109 (132)
T 4flb_A 82 SFADVLPEAAALVK--D--PSVSKSVERIFKI 109 (132)
T ss_dssp HHHTTHHHHHHTTC--S--TTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--C--HHHHHHHHHHHHH
Confidence 34444554454443 2 3445555555554
Done!