Query 006254
Match_columns 653
No_of_seqs 523 out of 3185
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 20:36:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006254.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006254hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02442 Cob-chelat-sub cobal 100.0 2.1E-83 4.6E-88 735.7 51.9 541 92-650 1-555 (633)
2 PRK13406 bchD magnesium chelat 100.0 9.4E-81 2E-85 700.1 43.8 478 100-651 8-491 (584)
3 TIGR02031 BchD-ChlD magnesium 100.0 4.1E-79 8.8E-84 693.1 49.1 494 101-651 1-497 (589)
4 COG1239 ChlI Mg-chelatase subu 100.0 1E-66 2.2E-71 549.0 30.5 321 90-412 12-332 (423)
5 CHL00081 chlI Mg-protoporyphyr 100.0 1.1E-56 2.3E-61 475.7 25.5 320 88-409 10-329 (350)
6 TIGR02030 BchI-ChlI magnesium 100.0 4.4E-53 9.5E-58 448.5 27.9 316 92-409 1-316 (337)
7 PRK13407 bchI magnesium chelat 100.0 3.8E-49 8.2E-54 417.5 26.6 312 89-409 2-313 (334)
8 PF01078 Mg_chelatase: Magnesi 100.0 1.1E-32 2.3E-37 270.3 13.0 176 93-296 1-200 (206)
9 PRK09862 putative ATP-dependen 100.0 3.3E-30 7.1E-35 285.4 21.2 274 92-403 188-493 (506)
10 COG1240 ChlD Mg-chelatase subu 100.0 1.8E-30 4E-35 257.8 14.5 151 487-652 19-170 (261)
11 COG0606 Predicted ATPase with 100.0 3.6E-30 7.9E-35 275.5 16.9 267 91-402 175-485 (490)
12 COG3829 RocR Transcriptional r 100.0 3.8E-30 8.3E-35 278.5 14.3 237 89-395 239-490 (560)
13 COG3604 FhlA Transcriptional r 100.0 5.3E-30 1.1E-34 273.8 15.1 234 91-395 219-465 (550)
14 TIGR00368 Mg chelatase-related 100.0 5.2E-29 1.1E-33 277.1 22.1 265 91-401 188-498 (499)
15 COG2204 AtoC Response regulato 100.0 2E-29 4.3E-34 273.8 15.8 314 9-397 31-386 (464)
16 smart00350 MCM minichromosome 100.0 2.8E-28 6E-33 274.3 25.7 263 95-403 203-505 (509)
17 PRK13531 regulatory ATPase Rav 100.0 3E-28 6.6E-33 265.2 21.7 260 95-408 20-289 (498)
18 COG0714 MoxR-like ATPases [Gen 99.9 1.1E-23 2.4E-28 225.1 21.4 266 93-408 22-302 (329)
19 TIGR02974 phageshock_pspF psp 99.9 6.3E-24 1.4E-28 226.4 17.3 227 97-394 1-242 (329)
20 PTZ00111 DNA replication licen 99.9 1.6E-22 3.4E-27 233.4 24.4 265 95-403 450-805 (915)
21 TIGR02902 spore_lonB ATP-depen 99.9 1E-22 2.2E-27 229.9 20.7 250 83-400 53-330 (531)
22 PRK15424 propionate catabolism 99.9 5.9E-23 1.3E-27 230.2 18.2 243 91-395 215-478 (538)
23 COG1221 PspF Transcriptional r 99.9 2.3E-23 5E-28 223.0 14.0 229 91-386 74-313 (403)
24 TIGR02329 propionate_PrpR prop 99.9 8.2E-23 1.8E-27 229.2 18.6 237 91-397 208-465 (526)
25 PRK11608 pspF phage shock prot 99.9 1.9E-22 4.1E-27 215.1 17.6 231 94-395 5-250 (326)
26 PF00493 MCM: MCM2/3/5 family 99.9 1.8E-23 3.9E-28 223.2 9.4 260 95-402 24-326 (331)
27 TIGR01817 nifA Nif-specific re 99.9 2.6E-22 5.6E-27 228.0 18.0 237 89-396 190-439 (534)
28 PRK05022 anaerobic nitric oxid 99.9 4.6E-22 1E-26 224.3 18.2 223 93-382 185-420 (509)
29 PF05496 RuvB_N: Holliday junc 99.9 1.3E-22 2.9E-27 200.5 9.4 208 85-384 14-231 (233)
30 COG3283 TyrR Transcriptional r 99.9 1E-21 2.3E-26 201.8 14.7 231 90-395 199-442 (511)
31 PRK10820 DNA-binding transcrip 99.9 1.6E-21 3.5E-26 220.1 16.8 236 90-395 199-447 (520)
32 PRK11388 DNA-binding transcrip 99.9 2.3E-21 5E-26 224.8 17.8 235 91-399 321-568 (638)
33 TIGR02640 gas_vesic_GvpN gas v 99.9 1.9E-20 4.1E-25 193.9 19.8 214 115-407 20-262 (262)
34 PF00158 Sigma54_activat: Sigm 99.9 2.2E-21 4.9E-26 187.3 11.1 152 97-292 1-165 (168)
35 TIGR02915 PEP_resp_reg putativ 99.8 2.9E-20 6.2E-25 206.7 17.5 233 93-395 137-382 (445)
36 TIGR00764 lon_rel lon-related 99.8 9.6E-20 2.1E-24 208.2 22.2 285 88-403 11-392 (608)
37 PRK10923 glnG nitrogen regulat 99.8 4.9E-20 1.1E-24 206.2 17.5 236 92-398 135-384 (469)
38 PRK15429 formate hydrogenlyase 99.8 3.9E-20 8.5E-25 216.0 17.2 220 91-378 372-605 (686)
39 COG2255 RuvB Holliday junction 99.8 2E-19 4.3E-24 181.0 19.4 224 88-404 19-253 (332)
40 COG1241 MCM2 Predicted ATPase 99.8 2.3E-19 5E-24 203.1 21.4 269 94-407 285-597 (682)
41 KOG0480 DNA replication licens 99.8 2.7E-19 5.9E-24 195.4 20.0 265 94-404 344-645 (764)
42 COG1223 Predicted ATPase (AAA+ 99.8 7.1E-20 1.5E-24 181.5 13.9 217 89-403 115-356 (368)
43 COG2256 MGS1 ATPase related to 99.8 1.1E-19 2.4E-24 190.9 14.3 218 85-400 14-236 (436)
44 COG1222 RPT1 ATP-dependent 26S 99.8 1.9E-19 4.1E-24 186.3 14.9 223 88-407 144-397 (406)
45 PRK11361 acetoacetate metaboli 99.8 3.5E-19 7.6E-24 198.6 17.9 236 93-398 141-389 (457)
46 KOG0734 AAA+-type ATPase conta 99.8 1.4E-19 3E-24 194.0 12.3 219 88-404 297-543 (752)
47 PRK13765 ATP-dependent proteas 99.8 3.6E-18 7.7E-23 194.8 19.9 285 87-400 23-398 (637)
48 TIGR02903 spore_lon_C ATP-depe 99.8 3.2E-18 6.9E-23 196.4 19.3 244 89-400 148-428 (615)
49 PRK15115 response regulator Gl 99.8 2.5E-18 5.3E-23 191.2 17.5 232 95-397 134-379 (444)
50 KOG0482 DNA replication licens 99.8 2.6E-18 5.5E-23 183.2 15.7 264 95-406 342-642 (721)
51 TIGR01818 ntrC nitrogen regula 99.8 3.7E-18 8E-23 190.7 17.9 235 94-399 133-381 (463)
52 KOG0730 AAA+-type ATPase [Post 99.8 1.1E-18 2.3E-23 192.5 12.7 223 85-403 424-675 (693)
53 COG3284 AcoR Transcriptional a 99.8 7.8E-19 1.7E-23 194.1 11.6 221 98-395 316-550 (606)
54 KOG0738 AAA+-type ATPase [Post 99.8 6.3E-19 1.4E-23 183.4 9.7 162 89-311 206-394 (491)
55 PRK10365 transcriptional regul 99.8 1E-17 2.2E-22 185.9 18.8 232 96-397 140-384 (441)
56 KOG0478 DNA replication licens 99.8 1.8E-17 4E-22 182.5 19.9 259 96-402 430-724 (804)
57 TIGR01650 PD_CobS cobaltochela 99.8 1.7E-17 3.7E-22 174.2 18.1 162 102-310 52-231 (327)
58 PRK00080 ruvB Holliday junctio 99.8 2.3E-17 5E-22 176.4 19.5 222 88-402 18-250 (328)
59 PF07726 AAA_3: ATPase family 99.8 4E-18 8.6E-23 154.7 10.5 124 118-290 1-130 (131)
60 TIGR00635 ruvB Holliday juncti 99.7 4.9E-17 1.1E-21 171.9 19.0 215 93-401 2-228 (305)
61 PF07728 AAA_5: AAA domain (dy 99.7 6.8E-18 1.5E-22 157.6 8.3 128 118-289 1-139 (139)
62 KOG2028 ATPase related to the 99.7 1.5E-17 3.3E-22 171.6 10.1 229 85-400 128-366 (554)
63 PRK05342 clpX ATP-dependent pr 99.7 4.6E-17 1E-21 177.9 13.7 217 96-375 72-371 (412)
64 TIGR02881 spore_V_K stage V sp 99.7 9E-17 1.9E-21 166.4 14.4 214 94-395 5-253 (261)
65 PRK03992 proteasome-activating 99.7 6.6E-17 1.4E-21 176.6 14.0 224 88-407 124-377 (389)
66 KOG0731 AAA+-type ATPase conta 99.7 2.1E-16 4.5E-21 179.4 15.7 219 90-405 306-556 (774)
67 KOG0733 Nuclear AAA ATPase (VC 99.7 1.6E-16 3.5E-21 173.2 13.1 158 89-311 505-691 (802)
68 KOG0479 DNA replication licens 99.7 1.6E-15 3.5E-20 164.2 20.4 262 96-402 302-642 (818)
69 TIGR00382 clpX endopeptidase C 99.7 4.7E-16 1E-20 169.2 15.9 218 95-377 77-379 (413)
70 CHL00195 ycf46 Ycf46; Provisio 99.7 2.8E-16 6E-21 174.9 14.4 220 90-405 223-466 (489)
71 TIGR01241 FtsH_fam ATP-depende 99.7 3.8E-16 8.1E-21 176.0 14.9 217 89-404 49-297 (495)
72 PTZ00454 26S protease regulato 99.7 4.2E-16 9.1E-21 169.9 13.6 221 88-404 138-388 (398)
73 PRK07003 DNA polymerase III su 99.7 1.4E-15 3E-20 172.7 18.0 232 86-397 7-239 (830)
74 KOG0477 DNA replication licens 99.7 8.2E-16 1.8E-20 167.5 15.5 266 96-405 450-760 (854)
75 PRK14956 DNA polymerase III su 99.7 1.3E-15 2.9E-20 167.2 17.0 236 85-400 8-244 (484)
76 PTZ00361 26 proteosome regulat 99.7 5E-16 1.1E-20 170.5 13.4 224 88-407 176-429 (438)
77 CHL00176 ftsH cell division pr 99.7 8.3E-16 1.8E-20 176.2 14.9 217 90-405 178-426 (638)
78 TIGR02880 cbbX_cfxQ probable R 99.6 7.8E-16 1.7E-20 161.2 13.0 155 96-309 23-205 (284)
79 PHA02244 ATPase-like protein 99.6 7.5E-15 1.6E-19 155.9 19.6 133 115-299 118-262 (383)
80 TIGR01242 26Sp45 26S proteasom 99.6 7.3E-16 1.6E-20 167.2 12.3 219 88-402 115-363 (364)
81 PRK14958 DNA polymerase III su 99.6 4.2E-15 9E-20 166.9 18.5 235 86-400 7-242 (509)
82 PRK13342 recombination factor 99.6 2.4E-15 5.3E-20 165.7 15.7 211 87-402 4-219 (413)
83 COG1224 TIP49 DNA helicase TIP 99.6 8.7E-15 1.9E-19 151.4 17.9 134 225-406 292-436 (450)
84 PRK14960 DNA polymerase III su 99.6 7.4E-15 1.6E-19 165.4 18.5 233 86-398 6-239 (702)
85 KOG0739 AAA+-type ATPase [Post 99.6 3.8E-16 8.3E-21 157.7 7.1 161 84-308 122-308 (439)
86 CHL00181 cbbX CbbX; Provisiona 99.6 3.3E-15 7.2E-20 156.5 14.3 157 95-310 23-207 (287)
87 PRK12323 DNA polymerase III su 99.6 7.1E-15 1.5E-19 165.2 17.5 231 87-397 8-244 (700)
88 PRK14962 DNA polymerase III su 99.6 1.1E-14 2.3E-19 162.1 18.0 235 87-401 6-241 (472)
89 smart00763 AAA_PrkA PrkA AAA d 99.6 5.9E-15 1.3E-19 156.7 15.0 216 91-309 45-324 (361)
90 KOG0737 AAA+-type ATPase [Post 99.6 7.2E-16 1.6E-20 160.8 6.6 172 91-314 88-276 (386)
91 PRK14949 DNA polymerase III su 99.6 1.6E-14 3.4E-19 167.2 17.7 217 86-378 7-224 (944)
92 PRK07994 DNA polymerase III su 99.6 2E-14 4.4E-19 163.9 18.0 232 87-398 8-240 (647)
93 PRK13341 recombination factor 99.6 1.3E-14 2.9E-19 168.3 16.2 223 85-401 18-246 (725)
94 TIGR02639 ClpA ATP-dependent C 99.6 9.6E-15 2.1E-19 171.6 15.3 228 90-401 177-428 (731)
95 PRK14964 DNA polymerase III su 99.6 2.1E-14 4.6E-19 159.3 17.1 238 85-402 3-241 (491)
96 KOG0481 DNA replication licens 99.6 4.2E-14 9E-19 151.5 17.9 265 96-405 332-642 (729)
97 TIGR01243 CDC48 AAA family ATP 99.6 1.1E-14 2.3E-19 171.6 14.5 157 89-310 447-633 (733)
98 PRK14961 DNA polymerase III su 99.6 7.2E-14 1.6E-18 151.5 19.7 235 86-400 7-242 (363)
99 COG0465 HflB ATP-dependent Zn 99.6 1.3E-14 2.8E-19 162.3 13.7 218 90-406 145-394 (596)
100 PRK11034 clpA ATP-dependent Cl 99.6 2.7E-14 6E-19 166.4 16.8 213 95-375 458-708 (758)
101 PRK08691 DNA polymerase III su 99.6 4.8E-14 1E-18 160.2 17.6 235 86-400 7-242 (709)
102 PRK14957 DNA polymerase III su 99.6 5.1E-14 1.1E-18 158.3 17.7 235 86-400 7-242 (546)
103 PRK14951 DNA polymerase III su 99.6 7.6E-14 1.6E-18 158.9 18.4 233 87-399 8-246 (618)
104 PRK06645 DNA polymerase III su 99.6 9E-14 2E-18 155.4 18.1 241 87-404 13-258 (507)
105 PLN03025 replication factor C 99.6 9.4E-14 2E-18 148.1 17.4 215 87-399 5-220 (319)
106 KOG0736 Peroxisome assembly fa 99.6 7.5E-15 1.6E-19 163.8 9.1 163 88-309 665-854 (953)
107 COG0464 SpoVK ATPases of the A 99.6 2.9E-14 6.3E-19 160.9 14.0 218 88-401 235-482 (494)
108 PRK14952 DNA polymerase III su 99.5 1.4E-13 3E-18 156.2 18.9 236 87-399 5-241 (584)
109 PRK14969 DNA polymerase III su 99.5 1.9E-13 4E-18 154.6 19.5 234 87-400 8-242 (527)
110 PRK07764 DNA polymerase III su 99.5 1.4E-13 3E-18 161.7 18.4 232 87-395 7-239 (824)
111 KOG0989 Replication factor C, 99.5 2E-13 4.3E-18 139.4 15.7 204 85-379 26-235 (346)
112 KOG0727 26S proteasome regulat 99.5 1.4E-13 3.1E-18 136.4 13.2 220 89-405 149-399 (408)
113 PRK14959 DNA polymerase III su 99.5 3.6E-13 7.8E-18 152.5 17.9 232 86-397 7-239 (624)
114 TIGR03689 pup_AAA proteasome A 99.5 1.1E-13 2.5E-18 154.1 13.7 175 88-312 175-378 (512)
115 TIGR03346 chaperone_ClpB ATP-d 99.5 1.5E-13 3.3E-18 163.8 15.7 211 95-375 565-818 (852)
116 KOG0733 Nuclear AAA ATPase (VC 99.5 6.2E-14 1.3E-18 153.2 11.0 160 91-311 186-373 (802)
117 TIGR03345 VI_ClpV1 type VI sec 99.5 2.2E-13 4.7E-18 161.7 16.3 213 89-364 181-411 (852)
118 PRK05563 DNA polymerase III su 99.5 8.9E-13 1.9E-17 150.1 19.7 231 88-398 9-240 (559)
119 KOG0652 26S proteasome regulat 99.5 1.9E-13 4.1E-18 136.0 12.4 221 90-406 166-416 (424)
120 PRK11034 clpA ATP-dependent Cl 99.5 2E-13 4.3E-18 159.3 14.3 164 91-310 182-360 (758)
121 TIGR00390 hslU ATP-dependent p 99.5 2.6E-13 5.7E-18 146.1 13.8 157 223-400 246-428 (441)
122 COG4650 RtcR Sigma54-dependent 99.5 5.7E-14 1.2E-18 141.8 8.1 228 103-399 196-440 (531)
123 PRK08451 DNA polymerase III su 99.5 1.3E-12 2.8E-17 146.5 19.5 234 86-399 5-239 (535)
124 CHL00206 ycf2 Ycf2; Provisiona 99.5 1.6E-13 3.5E-18 166.1 12.8 140 224-405 1732-1880(2281)
125 PRK10733 hflB ATP-dependent me 99.5 2E-13 4.2E-18 158.1 13.0 215 91-404 148-394 (644)
126 TIGR02928 orc1/cdc6 family rep 99.5 1E-12 2.2E-17 142.4 17.5 247 91-402 11-274 (365)
127 PRK05201 hslU ATP-dependent pr 99.5 3.7E-13 8E-18 145.0 13.5 156 223-400 248-430 (443)
128 PRK12402 replication factor C 99.5 1.9E-12 4.1E-17 138.5 18.8 231 86-399 6-246 (337)
129 KOG0740 AAA+-type ATPase [Post 99.5 8E-14 1.7E-18 150.3 8.2 161 88-310 146-331 (428)
130 PRK09111 DNA polymerase III su 99.5 1.2E-12 2.7E-17 149.2 18.2 234 85-401 14-256 (598)
131 PRK05896 DNA polymerase III su 99.5 1.3E-12 2.8E-17 147.3 17.9 232 87-398 8-240 (605)
132 PRK14963 DNA polymerase III su 99.5 1.2E-12 2.6E-17 146.9 17.6 233 87-402 6-240 (504)
133 PRK14965 DNA polymerase III su 99.5 1.4E-12 3E-17 149.1 18.3 232 87-398 8-240 (576)
134 TIGR03420 DnaA_homol_Hda DnaA 99.5 8.7E-13 1.9E-17 133.1 14.8 206 91-399 11-225 (226)
135 PRK08903 DnaA regulatory inact 99.5 2.6E-12 5.6E-17 130.2 18.2 206 89-400 12-224 (227)
136 TIGR02639 ClpA ATP-dependent C 99.5 6.7E-13 1.5E-17 156.1 15.4 214 95-375 454-704 (731)
137 TIGR00763 lon ATP-dependent pr 99.5 6.5E-13 1.4E-17 157.1 15.3 208 96-372 321-547 (775)
138 cd01451 vWA_Magnesium_chelatas 99.4 5.9E-13 1.3E-17 129.9 12.2 88 562-649 1-89 (178)
139 PTZ00112 origin recognition co 99.4 8.4E-13 1.8E-17 150.7 14.9 243 92-406 752-1010(1164)
140 PRK10865 protein disaggregatio 99.4 1.3E-12 2.9E-17 155.4 16.6 213 94-375 567-821 (857)
141 COG0542 clpA ATP-binding subun 99.4 1.6E-12 3.5E-17 149.1 16.2 211 95-375 491-747 (786)
142 COG2812 DnaX DNA polymerase II 99.4 9.3E-13 2E-17 146.0 13.4 235 87-401 8-243 (515)
143 PRK14955 DNA polymerase III su 99.4 4E-12 8.7E-17 139.5 18.3 238 86-399 7-254 (397)
144 PLN00020 ribulose bisphosphate 99.4 3.4E-13 7.3E-18 142.4 9.2 145 116-310 148-309 (413)
145 PF14532 Sigma54_activ_2: Sigm 99.4 2.1E-13 4.6E-18 127.5 6.2 129 98-299 1-137 (138)
146 KOG0728 26S proteasome regulat 99.4 1.9E-12 4.1E-17 128.3 13.1 195 116-405 181-391 (404)
147 COG1219 ClpX ATP-dependent pro 99.4 8.5E-13 1.9E-17 135.0 10.8 214 95-376 61-361 (408)
148 PRK07133 DNA polymerase III su 99.4 3.1E-12 6.7E-17 146.9 16.7 227 88-398 11-239 (725)
149 COG1474 CDC6 Cdc6-related prot 99.4 1.1E-12 2.3E-17 141.7 12.1 243 95-404 17-267 (366)
150 PRK06647 DNA polymerase III su 99.4 2.9E-12 6.3E-17 145.5 16.2 233 87-399 8-241 (563)
151 PRK10787 DNA-binding ATP-depen 99.4 2.9E-12 6.3E-17 150.6 16.6 229 96-399 323-579 (784)
152 PRK14953 DNA polymerase III su 99.4 7.6E-12 1.6E-16 140.0 18.9 232 88-399 9-241 (486)
153 KOG0729 26S proteasome regulat 99.4 4.4E-13 9.6E-18 133.8 7.9 228 88-412 170-428 (435)
154 KOG1942 DNA helicase, TBP-inte 99.4 7.5E-12 1.6E-16 126.6 16.5 135 225-407 297-443 (456)
155 PRK00440 rfc replication facto 99.4 9.7E-12 2.1E-16 131.9 17.8 214 87-399 9-223 (319)
156 PRK08084 DNA replication initi 99.4 7E-12 1.5E-16 127.9 15.9 205 90-400 17-234 (235)
157 PHA02544 44 clamp loader, smal 99.4 9.5E-12 2.1E-16 132.3 17.2 213 87-398 13-227 (316)
158 PRK14950 DNA polymerase III su 99.4 1.3E-11 2.9E-16 141.6 19.0 232 87-398 8-241 (585)
159 PRK06305 DNA polymerase III su 99.4 1.3E-11 2.8E-16 137.2 18.3 232 88-399 10-243 (451)
160 TIGR02397 dnaX_nterm DNA polym 99.4 1.9E-11 4.1E-16 131.9 18.7 233 88-400 7-240 (355)
161 PRK14954 DNA polymerase III su 99.4 1.9E-11 4E-16 139.8 18.4 237 87-399 8-254 (620)
162 TIGR01243 CDC48 AAA family ATP 99.4 4.9E-12 1.1E-16 149.2 14.1 155 90-309 173-356 (733)
163 KOG0726 26S proteasome regulat 99.4 1.2E-12 2.6E-17 132.2 7.3 221 89-406 179-430 (440)
164 PRK00411 cdc6 cell division co 99.4 3E-11 6.6E-16 132.3 19.2 242 92-402 27-282 (394)
165 PRK14971 DNA polymerase III su 99.3 3.5E-11 7.7E-16 138.1 19.9 232 87-398 9-242 (614)
166 COG0466 Lon ATP-dependent Lon 99.3 6.9E-12 1.5E-16 140.4 13.4 230 96-399 324-581 (782)
167 CHL00095 clpC Clp protease ATP 99.3 5.9E-12 1.3E-16 149.9 13.5 210 91-363 175-401 (821)
168 TIGR03345 VI_ClpV1 type VI sec 99.3 1.8E-11 3.8E-16 145.5 17.4 213 95-376 566-824 (852)
169 PRK06893 DNA replication initi 99.3 2.4E-11 5.1E-16 123.6 15.9 210 89-400 10-228 (229)
170 PRK04195 replication factor C 99.3 1.8E-11 3.9E-16 137.7 16.1 208 87-399 6-222 (482)
171 CHL00095 clpC Clp protease ATP 99.3 1.3E-11 2.7E-16 147.1 15.6 211 95-375 509-774 (821)
172 PRK11331 5-methylcytosine-spec 99.3 1.4E-11 3.1E-16 134.3 14.3 161 94-296 174-356 (459)
173 PRK06620 hypothetical protein; 99.3 8.8E-11 1.9E-15 118.1 18.1 123 226-399 87-213 (214)
174 PRK08727 hypothetical protein; 99.3 4.3E-11 9.3E-16 122.0 15.6 207 91-400 15-229 (233)
175 PRK10865 protein disaggregatio 99.3 1.7E-11 3.6E-16 146.1 14.5 214 89-365 172-403 (857)
176 TIGR03346 chaperone_ClpB ATP-d 99.3 1.2E-11 2.6E-16 147.6 12.9 211 90-363 168-396 (852)
177 KOG0735 AAA+-type ATPase [Post 99.3 1.4E-11 3E-16 136.9 12.2 154 91-309 663-845 (952)
178 PF06068 TIP49: TIP49 C-termin 99.3 5.1E-11 1.1E-15 125.8 15.2 107 225-379 279-396 (398)
179 PRK14948 DNA polymerase III su 99.3 9.8E-11 2.1E-15 134.5 18.5 231 87-396 8-239 (620)
180 cd01466 vWA_C3HC4_type VWA C3H 99.3 2.3E-11 4.9E-16 116.1 11.0 87 563-651 2-92 (155)
181 PRK14970 DNA polymerase III su 99.3 1.2E-10 2.7E-15 126.5 17.6 222 87-400 9-231 (367)
182 PF00004 AAA: ATPase family as 99.3 4.5E-12 9.8E-17 116.1 5.1 115 119-296 1-131 (132)
183 KOG0742 AAA+-type ATPase [Post 99.3 1.9E-10 4.1E-15 121.1 17.3 243 89-404 349-614 (630)
184 PRK07940 DNA polymerase III su 99.2 4.5E-11 9.7E-16 130.4 12.3 172 93-308 3-185 (394)
185 PRK00149 dnaA chromosomal repl 99.2 5.5E-11 1.2E-15 132.7 13.2 221 90-403 117-350 (450)
186 cd00009 AAA The AAA+ (ATPases 99.2 4.8E-11 1E-15 109.9 10.3 149 98-296 1-150 (151)
187 cd01463 vWA_VGCC_like VWA Volt 99.2 7E-11 1.5E-15 116.5 11.3 91 559-651 11-110 (190)
188 KOG0745 Putative ATP-dependent 99.2 1.1E-10 2.4E-15 123.9 13.1 205 117-384 227-510 (564)
189 KOG2004 Mitochondrial ATP-depe 99.2 7.5E-11 1.6E-15 131.5 12.1 201 95-368 411-634 (906)
190 KOG0991 Replication factor C, 99.2 4.9E-11 1.1E-15 117.5 9.4 217 85-399 17-234 (333)
191 PRK09087 hypothetical protein; 99.2 8.2E-10 1.8E-14 112.0 18.6 130 226-402 89-222 (226)
192 KOG0651 26S proteasome regulat 99.2 2.4E-11 5.2E-16 124.2 6.9 161 90-309 127-313 (388)
193 PF07724 AAA_2: AAA domain (Cd 99.2 2.2E-11 4.7E-16 118.2 6.2 116 116-277 3-130 (171)
194 TIGR00362 DnaA chromosomal rep 99.2 1.5E-10 3.4E-15 127.4 13.2 221 90-403 105-338 (405)
195 cd01453 vWA_transcription_fact 99.2 1.4E-10 3.1E-15 113.8 10.6 90 562-651 4-101 (183)
196 KOG0744 AAA+-type ATPase [Post 99.1 1.3E-10 2.9E-15 119.3 9.7 212 119-405 180-417 (423)
197 PRK13685 hypothetical protein; 99.1 2.3E-10 5.1E-15 122.4 11.7 91 558-650 85-180 (326)
198 KOG2680 DNA helicase TIP49, TB 99.1 1.3E-09 2.8E-14 110.9 16.2 136 224-407 288-434 (454)
199 cd01462 VWA_YIEM_type VWA YIEM 99.1 3.5E-10 7.7E-15 107.1 11.2 89 563-651 2-90 (152)
200 PRK12422 chromosomal replicati 99.1 6.6E-10 1.4E-14 123.3 15.1 220 89-403 105-344 (445)
201 PRK14086 dnaA chromosomal repl 99.1 8.1E-10 1.8E-14 125.0 15.3 221 89-402 282-515 (617)
202 cd01456 vWA_ywmD_type VWA ywmD 99.1 3.7E-10 8E-15 112.8 11.0 93 556-649 15-130 (206)
203 COG1067 LonB Predicted ATP-dep 99.1 1.2E-09 2.5E-14 124.9 15.5 267 90-404 99-401 (647)
204 cd01465 vWA_subgroup VWA subgr 99.1 7.5E-10 1.6E-14 106.4 11.9 89 562-652 1-91 (170)
205 PF05673 DUF815: Protein of un 99.1 2.6E-09 5.6E-14 107.8 15.9 189 89-372 21-239 (249)
206 KOG0741 AAA+-type ATPase [Post 99.1 7.1E-11 1.5E-15 127.7 5.0 141 115-310 255-412 (744)
207 COG5271 MDN1 AAA ATPase contai 99.1 2.1E-09 4.6E-14 126.8 17.1 210 115-408 887-1113(4600)
208 KOG0732 AAA+-type ATPase conta 99.1 4.1E-10 8.8E-15 131.9 11.0 187 90-365 260-475 (1080)
209 PRK14088 dnaA chromosomal repl 99.1 9.8E-10 2.1E-14 122.1 13.6 223 89-403 99-333 (440)
210 PRK09112 DNA polymerase III su 99.1 2.9E-09 6.4E-14 114.7 16.7 188 89-309 17-210 (351)
211 PRK14087 dnaA chromosomal repl 99.1 1.2E-09 2.7E-14 121.4 13.9 223 91-401 111-347 (450)
212 cd01472 vWA_collagen von Wille 99.1 1E-09 2.2E-14 105.4 11.5 89 562-651 1-94 (164)
213 cd01454 vWA_norD_type norD typ 99.1 9.4E-10 2E-14 106.8 11.0 89 563-651 2-99 (174)
214 PRK05642 DNA replication initi 99.1 3.1E-09 6.8E-14 108.4 15.1 129 226-400 99-233 (234)
215 PRK07471 DNA polymerase III su 99.0 3.3E-09 7.2E-14 114.8 13.9 192 89-308 13-209 (365)
216 cd01480 vWA_collagen_alpha_1-V 99.0 2.2E-09 4.8E-14 105.5 11.2 90 561-651 2-103 (186)
217 cd01464 vWA_subfamily VWA subf 99.0 1.7E-09 3.7E-14 105.2 10.2 87 561-651 3-94 (176)
218 cd01470 vWA_complement_factors 99.0 2.4E-09 5.1E-14 106.3 11.4 87 562-649 1-98 (198)
219 PF00308 Bac_DnaA: Bacterial d 99.0 3.9E-09 8.4E-14 106.6 12.7 203 90-384 3-218 (219)
220 COG0542 clpA ATP-binding subun 99.0 2.5E-09 5.3E-14 123.3 12.3 215 90-365 165-395 (786)
221 KOG0743 AAA+-type ATPase [Post 99.0 4E-09 8.6E-14 113.6 12.2 141 90-297 196-369 (457)
222 cd01452 VWA_26S_proteasome_sub 99.0 3.1E-09 6.6E-14 104.2 10.4 88 563-650 5-99 (187)
223 cd01461 vWA_interalpha_trypsin 99.0 3.7E-09 8.1E-14 101.5 10.8 89 561-651 2-95 (171)
224 TIGR03015 pepcterm_ATPase puta 99.0 9.6E-09 2.1E-13 106.4 14.4 138 224-401 123-265 (269)
225 COG1220 HslU ATP-dependent pro 98.9 1.5E-09 3.3E-14 112.2 7.9 133 224-376 250-401 (444)
226 cd01474 vWA_ATR ATR (Anthrax T 98.9 5.8E-09 1.3E-13 102.4 11.6 89 560-650 3-94 (185)
227 PRK15455 PrkA family serine pr 98.9 2.7E-09 5.9E-14 118.8 10.2 210 91-308 71-342 (644)
228 cd01482 vWA_collagen_alphaI-XI 98.9 6.7E-09 1.5E-13 99.9 11.2 87 562-649 1-92 (164)
229 KOG0730 AAA+-type ATPase [Post 98.9 5.1E-09 1.1E-13 116.8 11.5 151 95-310 184-362 (693)
230 cd01467 vWA_BatA_type VWA BatA 98.9 9.6E-09 2.1E-13 99.9 11.3 88 561-651 2-98 (180)
231 PF08298 AAA_PrkA: PrkA AAA do 98.9 5E-09 1.1E-13 110.7 8.9 213 94-309 59-321 (358)
232 PF13654 AAA_32: AAA domain; P 98.9 1.6E-08 3.5E-13 113.6 13.4 184 193-401 298-505 (509)
233 TIGR03436 acidobact_VWFA VWFA- 98.9 1.4E-08 3E-13 107.2 11.5 86 560-647 52-152 (296)
234 TIGR00868 hCaCC calcium-activa 98.8 1.2E-08 2.7E-13 119.4 11.5 90 561-652 304-399 (863)
235 COG0593 DnaA ATPase involved i 98.8 3.9E-08 8.5E-13 106.6 14.0 222 89-404 81-315 (408)
236 PRK08058 DNA polymerase III su 98.8 3.3E-08 7.2E-13 105.9 12.3 173 94-308 4-178 (329)
237 PF13519 VWA_2: von Willebrand 98.8 1E-08 2.2E-13 97.8 7.5 86 563-651 1-95 (172)
238 TIGR00602 rad24 checkpoint pro 98.8 3.6E-08 7.8E-13 113.1 12.4 57 85-141 74-135 (637)
239 cd01471 vWA_micronemal_protein 98.8 3.7E-08 7.9E-13 96.6 10.5 89 562-651 1-100 (186)
240 TIGR00678 holB DNA polymerase 98.8 1.6E-07 3.5E-12 92.3 14.6 69 224-308 96-164 (188)
241 COG4245 TerY Uncharacterized p 98.8 2E-08 4.3E-13 95.8 7.7 88 561-652 3-95 (207)
242 TIGR03788 marine_srt_targ mari 98.8 3.5E-08 7.7E-13 114.0 11.4 89 559-649 269-362 (596)
243 cd01476 VWA_integrin_invertebr 98.7 7.4E-08 1.6E-12 92.1 11.1 87 563-650 2-94 (163)
244 PRK07399 DNA polymerase III su 98.7 1.2E-07 2.7E-12 100.7 13.7 172 93-309 2-192 (314)
245 PRK05564 DNA polymerase III su 98.7 1.3E-07 2.9E-12 100.6 13.3 158 93-307 2-160 (313)
246 cd01477 vWA_F09G8-8_type VWA F 98.7 1.3E-07 2.9E-12 93.6 11.4 93 558-651 16-122 (193)
247 PF13177 DNA_pol3_delta2: DNA 98.7 1.8E-07 3.9E-12 90.1 11.6 158 99-296 1-159 (162)
248 cd01450 vWFA_subfamily_ECM Von 98.7 1.7E-07 3.6E-12 88.6 11.1 89 563-652 2-96 (161)
249 PF13768 VWA_3: von Willebrand 98.7 9.5E-08 2.1E-12 90.7 9.3 84 563-649 2-91 (155)
250 COG0470 HolB ATPase involved i 98.6 1.9E-07 4.1E-12 99.2 12.2 162 96-296 2-166 (325)
251 COG5271 MDN1 AAA ATPase contai 98.6 1.9E-07 4.1E-12 111.0 12.5 146 116-307 1543-1698(4600)
252 COG2607 Predicted ATPase (AAA+ 98.6 6.4E-07 1.4E-11 89.4 14.3 155 89-309 54-236 (287)
253 PRK04132 replication factor C 98.6 3.9E-07 8.5E-12 107.3 14.8 183 119-399 567-751 (846)
254 smart00382 AAA ATPases associa 98.6 4.4E-08 9.6E-13 89.0 5.3 26 116-141 2-27 (148)
255 PRK10997 yieM hypothetical pro 98.6 1.8E-07 4E-12 103.6 11.1 91 560-651 322-412 (487)
256 KOG1051 Chaperone HSP104 and r 98.6 5E-07 1.1E-11 105.8 15.1 134 95-276 562-710 (898)
257 smart00327 VWA von Willebrand 98.6 5E-07 1.1E-11 86.5 12.0 88 562-650 2-95 (177)
258 TIGR02688 conserved hypothetic 98.6 3.7E-07 8.1E-12 98.9 11.5 212 115-408 208-439 (449)
259 PRK05707 DNA polymerase III su 98.6 6.9E-07 1.5E-11 95.6 13.3 153 116-308 22-174 (328)
260 PRK06964 DNA polymerase III su 98.5 8.2E-07 1.8E-11 95.2 13.6 68 225-308 133-200 (342)
261 cd01475 vWA_Matrilin VWA_Matri 98.5 5.7E-07 1.2E-11 91.1 11.8 88 561-649 2-94 (224)
262 cd01457 vWA_ORF176_type VWA OR 98.5 5.4E-07 1.2E-11 89.5 10.5 86 561-649 2-95 (199)
263 cd00198 vWFA Von Willebrand fa 98.5 9.1E-07 2E-11 82.4 11.2 88 563-651 2-95 (161)
264 COG2425 Uncharacterized protei 98.5 5.5E-07 1.2E-11 98.1 10.9 101 550-651 261-362 (437)
265 PRK06871 DNA polymerase III su 98.5 1.2E-06 2.6E-11 93.4 13.1 167 100-307 7-174 (325)
266 PF05762 VWA_CoxE: VWA domain 98.5 6.2E-07 1.4E-11 90.8 10.0 118 514-651 25-145 (222)
267 PF12775 AAA_7: P-loop contain 98.4 3E-06 6.5E-11 88.4 14.5 82 225-309 101-190 (272)
268 cd01469 vWA_integrins_alpha_su 98.4 1.8E-06 4E-11 84.1 11.6 86 563-649 2-92 (177)
269 PF00092 VWA: von Willebrand f 98.4 1.4E-06 3E-11 83.8 10.5 88 563-651 1-94 (178)
270 KOG0990 Replication factor C, 98.4 1.1E-06 2.4E-11 91.0 9.6 156 83-292 29-185 (360)
271 PRK08699 DNA polymerase III su 98.4 3.4E-06 7.3E-11 90.2 13.8 164 100-303 6-176 (325)
272 PTZ00441 sporozoite surface pr 98.4 2.1E-06 4.5E-11 96.2 11.4 91 560-651 41-142 (576)
273 PRK08769 DNA polymerase III su 98.4 4.6E-06 9.9E-11 88.8 13.2 165 99-305 8-178 (319)
274 PF12774 AAA_6: Hydrolytic ATP 98.3 2.1E-06 4.6E-11 87.3 8.9 141 116-314 32-182 (231)
275 PRK06090 DNA polymerase III su 98.3 7.3E-06 1.6E-10 87.2 12.9 164 100-304 8-172 (319)
276 PRK07993 DNA polymerase III su 98.3 8.6E-06 1.9E-10 87.4 12.8 164 100-303 7-171 (334)
277 KOG1969 DNA replication checkp 98.2 6.9E-06 1.5E-10 92.9 11.8 199 88-377 264-513 (877)
278 cd01473 vWA_CTRP CTRP for CS 98.2 6.7E-06 1.4E-10 81.4 10.4 87 563-650 2-99 (192)
279 PRK08116 hypothetical protein; 98.2 2.3E-06 5E-11 89.1 7.2 54 224-289 178-237 (268)
280 KOG2035 Replication factor C, 98.2 2.2E-05 4.9E-10 79.9 13.5 219 88-379 6-233 (351)
281 cd01460 vWA_midasin VWA_Midasi 98.2 7.2E-06 1.6E-10 84.8 9.9 87 560-651 59-154 (266)
282 COG1721 Uncharacterized conser 98.2 6.2E-06 1.3E-10 91.3 10.0 107 505-635 191-305 (416)
283 PF05621 TniB: Bacterial TniB 98.2 2.6E-05 5.6E-10 81.4 13.3 230 95-398 34-285 (302)
284 PRK12377 putative replication 98.2 2.4E-06 5.3E-11 87.7 5.7 117 115-290 100-223 (248)
285 PRK06526 transposase; Provisio 98.1 2.7E-06 5.9E-11 87.8 4.7 50 91-140 72-122 (254)
286 KOG1808 AAA ATPase containing 98.1 1E-05 2.2E-10 100.5 9.3 132 115-292 439-581 (1856)
287 cd01458 vWA_ku Ku70/Ku80 N-ter 98.0 2.4E-05 5.2E-10 78.9 10.2 89 563-651 3-121 (218)
288 KOG0735 AAA+-type ATPase [Post 98.0 2.9E-05 6.4E-10 87.6 11.6 202 115-404 430-650 (952)
289 cd01481 vWA_collagen_alpha3-VI 97.9 8.1E-05 1.8E-09 71.8 11.3 86 563-649 2-93 (165)
290 KOG0736 Peroxisome assembly fa 97.9 9.1E-05 2E-09 84.5 12.9 144 119-314 434-578 (953)
291 KOG2227 Pre-initiation complex 97.9 3.2E-05 7E-10 83.9 8.7 225 91-389 146-386 (529)
292 PRK08181 transposase; Validate 97.9 1.2E-05 2.7E-10 83.5 5.2 26 115-140 105-130 (269)
293 PF13337 Lon_2: Putative ATP-d 97.9 0.00012 2.7E-09 80.1 12.7 213 115-409 207-438 (457)
294 KOG0741 AAA+-type ATPase [Post 97.8 2.7E-05 5.8E-10 85.3 6.8 138 116-314 538-688 (744)
295 KOG1514 Origin recognition com 97.8 9.6E-05 2.1E-09 83.8 11.1 139 225-404 509-657 (767)
296 TIGR02653 Lon_rel_chp conserve 97.8 0.00013 2.8E-09 83.1 11.2 167 216-409 261-447 (675)
297 PF01695 IstB_IS21: IstB-like 97.8 1.3E-05 2.8E-10 78.4 2.4 26 115-140 46-71 (178)
298 PRK07276 DNA polymerase III su 97.8 0.00028 6.1E-09 74.1 12.5 165 99-308 6-171 (290)
299 PF03266 NTPase_1: NTPase; In 97.7 6.7E-05 1.4E-09 72.7 7.3 136 118-291 1-150 (168)
300 TIGR02877 spore_yhbH sporulati 97.7 0.00025 5.4E-09 75.7 11.7 125 512-653 154-286 (371)
301 PF13173 AAA_14: AAA domain 97.7 5.1E-05 1.1E-09 69.9 5.5 25 117-141 3-27 (128)
302 COG1618 Predicted nucleotide k 97.7 0.00012 2.6E-09 69.3 7.9 155 117-314 6-174 (179)
303 PRK09183 transposase/IS protei 97.7 4.1E-05 8.8E-10 79.4 5.0 50 91-140 76-126 (259)
304 PRK07952 DNA replication prote 97.6 4.9E-05 1.1E-09 78.0 4.6 26 116-141 99-124 (244)
305 PF00910 RNA_helicase: RNA hel 97.6 8.5E-05 1.8E-09 66.3 5.5 49 226-275 51-106 (107)
306 PRK10536 hypothetical protein; 97.6 0.00011 2.5E-09 75.3 6.6 48 90-139 50-97 (262)
307 PRK06835 DNA replication prote 97.6 3.8E-05 8.2E-10 82.2 3.2 53 226-290 248-306 (329)
308 PRK06921 hypothetical protein; 97.6 3.5E-05 7.5E-10 80.2 2.8 27 115-141 116-142 (266)
309 COG1484 DnaC DNA replication p 97.6 8.3E-05 1.8E-09 76.9 5.4 28 114-141 103-130 (254)
310 PF13401 AAA_22: AAA domain; P 97.6 1.8E-05 3.9E-10 72.4 0.3 26 116-141 4-29 (131)
311 COG2766 PrkA Putative Ser prot 97.6 0.00019 4E-09 79.5 7.8 260 93-388 74-395 (649)
312 COG4867 Uncharacterized protei 97.5 0.00028 6E-09 75.1 8.4 135 501-652 407-549 (652)
313 PF13335 Mg_chelatase_2: Magne 97.5 0.00028 6.1E-09 61.8 7.2 56 345-401 40-95 (96)
314 PF01637 Arch_ATPase: Archaeal 97.5 0.00023 5.1E-09 71.1 7.3 45 97-141 1-45 (234)
315 cd01455 vWA_F11C1-5a_type Von 97.5 0.00037 8E-09 68.4 8.0 83 563-650 2-105 (191)
316 PF03969 AFG1_ATPase: AFG1-lik 97.5 0.00014 3E-09 78.9 5.4 27 115-141 61-87 (362)
317 PHA01747 putative ATP-dependen 97.5 0.00039 8.5E-09 73.9 8.6 119 116-292 190-338 (425)
318 PF01882 DUF58: Protein of unk 97.4 0.00015 3.2E-09 61.9 4.3 75 505-602 7-86 (86)
319 PF13604 AAA_30: AAA domain; P 97.3 0.00038 8.3E-09 69.1 6.6 26 225-250 94-119 (196)
320 PF03215 Rad17: Rad17 cell cyc 97.3 0.0079 1.7E-07 68.3 17.2 57 85-141 9-70 (519)
321 COG3267 ExeA Type II secretory 97.3 0.0024 5.1E-08 65.0 11.3 133 226-397 133-268 (269)
322 PRK05325 hypothetical protein; 97.3 0.0012 2.6E-08 71.7 9.8 99 547-653 204-306 (401)
323 PRK05917 DNA polymerase III su 97.3 0.0017 3.7E-08 68.1 10.5 57 225-296 96-152 (290)
324 PRK08939 primosomal protein Dn 97.2 0.0002 4.2E-09 76.1 3.2 27 115-141 155-181 (306)
325 PRK13695 putative NTPase; Prov 97.2 0.0013 2.8E-08 63.8 7.8 69 224-311 96-168 (174)
326 PRK05818 DNA polymerase III su 97.1 0.0008 1.7E-08 69.2 6.4 139 116-296 7-145 (261)
327 KOG3347 Predicted nucleotide k 97.1 0.0013 2.8E-08 61.5 6.8 25 116-140 7-31 (176)
328 PF05272 VirE: Virulence-assoc 97.1 0.00089 1.9E-08 66.6 6.3 70 226-296 97-168 (198)
329 PF05729 NACHT: NACHT domain 97.0 0.0021 4.5E-08 60.7 7.7 24 118-141 2-25 (166)
330 PRK14700 recombination factor 97.0 0.0021 4.5E-08 67.2 7.9 106 267-401 8-114 (300)
331 PF09967 DUF2201: VWA-like dom 97.0 0.0023 5.1E-08 58.9 7.2 77 564-648 1-79 (126)
332 PF04285 DUF444: Protein of un 96.9 0.0048 1E-07 67.6 10.5 101 542-653 223-330 (421)
333 cd01120 RecA-like_NTPases RecA 96.8 0.002 4.4E-08 60.4 5.7 23 119-141 2-24 (165)
334 COG3552 CoxE Protein containin 96.8 0.0039 8.5E-08 66.1 8.0 110 515-647 188-302 (395)
335 PF02562 PhoH: PhoH-like prote 96.7 0.0012 2.5E-08 66.0 3.6 36 99-140 8-43 (205)
336 PHA02624 large T antigen; Prov 96.7 0.0062 1.3E-07 69.3 9.7 28 114-141 429-456 (647)
337 PF06707 DUF1194: Protein of u 96.7 0.0087 1.9E-07 59.4 9.4 91 561-651 3-110 (205)
338 PRK04296 thymidine kinase; Pro 96.7 0.0035 7.7E-08 61.9 6.6 23 119-141 5-27 (190)
339 KOG2353 L-type voltage-depende 96.7 0.0057 1.2E-07 74.1 9.4 92 558-651 222-322 (1104)
340 TIGR01613 primase_Cterm phage/ 96.6 0.02 4.4E-07 60.8 12.2 70 226-296 130-202 (304)
341 cd01131 PilT Pilus retraction 96.5 0.01 2.2E-07 59.0 8.5 25 117-141 2-26 (198)
342 PRK07132 DNA polymerase III su 96.5 0.026 5.5E-07 59.8 11.6 66 224-305 90-155 (299)
343 PHA02774 E1; Provisional 96.4 0.01 2.2E-07 67.4 8.6 28 114-141 432-459 (613)
344 TIGR01448 recD_rel helicase, p 96.4 0.0062 1.3E-07 72.1 7.3 26 116-141 338-363 (720)
345 PF13207 AAA_17: AAA domain; P 96.4 0.0019 4.1E-08 58.3 2.3 23 119-141 2-24 (121)
346 PF04056 Ssl1: Ssl1-like; Int 96.4 0.011 2.3E-07 58.5 7.6 85 567-651 1-95 (193)
347 PRK10875 recD exonuclease V su 96.3 0.0089 1.9E-07 69.3 7.9 48 226-287 267-318 (615)
348 TIGR01447 recD exodeoxyribonuc 96.3 0.011 2.4E-07 68.2 8.3 49 225-287 260-312 (586)
349 KOG2170 ATPase of the AAA+ sup 96.2 0.0052 1.1E-07 63.8 4.7 59 218-282 172-230 (344)
350 PF13671 AAA_33: AAA domain; P 96.2 0.003 6.6E-08 58.5 2.9 23 119-141 2-24 (143)
351 COG4930 Predicted ATP-dependen 96.2 0.016 3.5E-07 62.2 8.3 171 211-408 265-454 (683)
352 COG4088 Predicted nucleotide k 96.2 0.0052 1.1E-07 60.6 4.2 24 118-141 3-26 (261)
353 PF13191 AAA_16: AAA ATPase do 96.2 0.0045 9.8E-08 59.8 3.9 59 97-156 2-63 (185)
354 COG0572 Udk Uridine kinase [Nu 96.2 0.027 6E-07 56.5 9.4 24 118-141 10-33 (218)
355 PRK05480 uridine/cytidine kina 96.1 0.077 1.7E-06 52.9 12.6 25 117-141 7-31 (209)
356 TIGR01420 pilT_fam pilus retra 96.1 0.022 4.8E-07 61.6 9.1 27 115-141 121-147 (343)
357 TIGR02768 TraA_Ti Ti-type conj 96.1 0.0093 2E-07 70.9 6.4 25 117-141 369-393 (744)
358 PF05970 PIF1: PIF1-like helic 96.1 0.016 3.4E-07 63.3 7.7 42 100-141 6-47 (364)
359 PRK08118 topology modulation p 96.0 0.0056 1.2E-07 59.2 3.7 24 118-141 3-26 (167)
360 PF13148 DUF3987: Protein of u 96.0 0.023 5E-07 61.9 8.9 172 225-406 150-364 (378)
361 COG1485 Predicted ATPase [Gene 96.0 0.0091 2E-07 63.5 5.2 27 115-141 64-90 (367)
362 KOG1051 Chaperone HSP104 and r 96.0 0.014 3E-07 69.4 7.2 155 94-308 185-359 (898)
363 cd01129 PulE-GspE PulE/GspE Th 95.9 0.027 5.8E-07 58.7 8.5 48 93-141 58-105 (264)
364 COG4178 ABC-type uncharacteriz 95.9 0.0059 1.3E-07 69.7 3.6 27 115-141 418-444 (604)
365 KOG2228 Origin recognition com 95.8 0.026 5.7E-07 59.6 7.6 93 227-329 139-236 (408)
366 PF13238 AAA_18: AAA domain; P 95.8 0.0052 1.1E-07 55.5 2.3 22 119-140 1-22 (129)
367 COG1936 Predicted nucleotide k 95.8 0.014 3E-07 56.2 5.2 23 118-141 2-24 (180)
368 PTZ00301 uridine kinase; Provi 95.8 0.064 1.4E-06 53.9 10.2 22 119-140 6-27 (210)
369 PF00437 T2SE: Type II/IV secr 95.8 0.015 3.2E-07 60.5 5.7 52 90-142 99-153 (270)
370 COG0464 SpoVK ATPases of the A 95.7 0.11 2.5E-06 58.8 13.3 71 226-310 78-161 (494)
371 PF10138 vWA-TerF-like: vWA fo 95.7 0.071 1.5E-06 52.8 10.0 85 562-650 2-97 (200)
372 PRK03839 putative kinase; Prov 95.7 0.0091 2E-07 58.1 3.7 24 118-141 2-25 (180)
373 COG3854 SpoIIIAA ncharacterize 95.7 0.035 7.7E-07 55.8 7.6 27 115-141 136-162 (308)
374 KOG2807 RNA polymerase II tran 95.7 0.033 7.3E-07 57.9 7.7 91 561-651 60-158 (378)
375 PRK00131 aroK shikimate kinase 95.6 0.0098 2.1E-07 56.9 3.6 26 116-141 4-29 (175)
376 PF01443 Viral_helicase1: Vira 95.6 0.022 4.7E-07 57.5 6.2 21 119-139 1-21 (234)
377 COG2718 Uncharacterized conser 95.6 0.058 1.2E-06 57.6 9.1 102 543-653 224-330 (423)
378 PF13245 AAA_19: Part of AAA d 95.5 0.012 2.6E-07 49.3 3.2 24 117-140 11-35 (76)
379 PHA00729 NTP-binding motif con 95.5 0.0091 2E-07 60.4 2.9 25 117-141 18-42 (226)
380 TIGR01359 UMP_CMP_kin_fam UMP- 95.5 0.01 2.2E-07 57.7 3.1 23 119-141 2-24 (183)
381 cd02019 NK Nucleoside/nucleoti 95.5 0.011 2.5E-07 48.2 2.9 22 119-140 2-23 (69)
382 PRK13947 shikimate kinase; Pro 95.5 0.015 3.3E-07 55.8 4.2 24 118-141 3-26 (171)
383 PF13086 AAA_11: AAA domain; P 95.5 0.016 3.5E-07 57.7 4.6 34 104-140 7-41 (236)
384 PRK13889 conjugal transfer rel 95.5 0.021 4.6E-07 69.3 6.2 55 224-291 433-491 (988)
385 PF11775 CobT_C: Cobalamin bio 95.4 0.034 7.3E-07 55.6 6.3 51 557-607 8-58 (219)
386 PRK13764 ATPase; Provisional 95.4 0.044 9.5E-07 63.2 8.1 27 115-141 256-282 (602)
387 COG0563 Adk Adenylate kinase a 95.4 0.012 2.5E-07 57.6 3.1 24 118-141 2-25 (178)
388 TIGR00235 udk uridine kinase. 95.4 0.12 2.6E-06 51.5 10.5 25 117-141 7-31 (207)
389 TIGR00150 HI0065_YjeE ATPase, 95.3 0.053 1.2E-06 50.4 7.0 28 114-141 20-47 (133)
390 PRK07261 topology modulation p 95.3 0.013 2.8E-07 56.9 3.1 24 118-141 2-25 (171)
391 PRK06217 hypothetical protein; 95.3 0.018 4E-07 56.3 4.1 24 118-141 3-26 (183)
392 TIGR02858 spore_III_AA stage I 95.3 0.065 1.4E-06 56.0 8.3 26 117-142 112-137 (270)
393 PRK08233 hypothetical protein; 95.2 0.015 3.2E-07 56.3 3.1 24 118-141 5-28 (182)
394 PRK00625 shikimate kinase; Pro 95.2 0.018 4E-07 56.0 3.8 24 118-141 2-25 (173)
395 PRK06762 hypothetical protein; 95.2 0.015 3.2E-07 55.7 3.0 24 118-141 4-27 (166)
396 PRK13826 Dtr system oriT relax 95.2 0.026 5.6E-07 69.0 5.7 58 225-296 469-530 (1102)
397 TIGR01313 therm_gnt_kin carboh 95.1 0.014 2.9E-07 55.8 2.7 23 119-141 1-23 (163)
398 PF09848 DUF2075: Uncharacteri 95.1 0.018 3.8E-07 62.5 3.8 23 118-140 3-25 (352)
399 PRK14532 adenylate kinase; Pro 95.1 0.016 3.5E-07 56.7 3.3 24 118-141 2-25 (188)
400 KOG2884 26S proteasome regulat 95.1 0.13 2.8E-06 50.9 9.2 90 563-652 5-101 (259)
401 cd02021 GntK Gluconate kinase 95.1 0.017 3.6E-07 54.3 3.1 23 119-141 2-24 (150)
402 PRK13949 shikimate kinase; Pro 95.1 0.022 4.7E-07 55.2 3.9 24 118-141 3-26 (169)
403 cd00227 CPT Chloramphenicol (C 95.1 0.016 3.5E-07 56.2 3.0 24 118-141 4-27 (175)
404 cd00464 SK Shikimate kinase (S 95.0 0.017 3.8E-07 54.1 3.0 24 118-141 1-24 (154)
405 cd02020 CMPK Cytidine monophos 95.0 0.024 5.2E-07 52.6 3.7 23 119-141 2-24 (147)
406 PLN02318 phosphoribulokinase/u 94.9 0.39 8.3E-06 55.1 13.7 44 98-141 46-90 (656)
407 COG2304 Uncharacterized protei 94.9 0.13 2.8E-06 56.1 10.0 92 558-651 34-128 (399)
408 cd01428 ADK Adenylate kinase ( 94.9 0.02 4.3E-07 56.0 3.1 23 119-141 2-24 (194)
409 COG1373 Predicted ATPase (AAA+ 94.9 0.56 1.2E-05 51.8 14.8 24 118-141 39-62 (398)
410 TIGR01360 aden_kin_iso1 adenyl 94.8 0.02 4.4E-07 55.6 3.0 25 117-141 4-28 (188)
411 PRK14530 adenylate kinase; Pro 94.8 0.021 4.6E-07 57.3 3.0 25 117-141 4-28 (215)
412 TIGR02525 plasmid_TraJ plasmid 94.8 0.072 1.6E-06 58.2 7.3 27 115-141 148-174 (372)
413 PF06309 Torsin: Torsin; Inte 94.8 0.028 6E-07 51.6 3.4 46 96-141 26-78 (127)
414 PF11265 Med25_VWA: Mediator c 94.7 0.25 5.4E-06 49.9 10.3 91 560-650 12-124 (226)
415 PRK08533 flagellar accessory p 94.7 0.09 2E-06 53.6 7.4 27 115-141 23-50 (230)
416 COG5245 DYN1 Dynein, heavy cha 94.7 0.15 3.2E-06 62.8 9.9 19 115-133 1493-1511(3164)
417 PRK13900 type IV secretion sys 94.7 0.039 8.4E-07 59.4 4.9 28 115-142 159-186 (332)
418 PRK14531 adenylate kinase; Pro 94.7 0.024 5.2E-07 55.5 3.0 25 117-141 3-27 (183)
419 PF13521 AAA_28: AAA domain; P 94.6 0.029 6.2E-07 53.6 3.2 21 119-139 2-22 (163)
420 TIGR02322 phosphon_PhnN phosph 94.6 0.027 5.9E-07 54.6 3.1 24 118-141 3-26 (179)
421 COG0703 AroK Shikimate kinase 94.5 0.033 7.2E-07 53.9 3.5 25 117-141 3-27 (172)
422 KOG1970 Checkpoint RAD17-RFC c 94.5 0.052 1.1E-06 60.7 5.3 59 83-141 70-135 (634)
423 PRK05057 aroK shikimate kinase 94.4 0.051 1.1E-06 52.8 4.5 25 117-141 5-29 (172)
424 PRK02496 adk adenylate kinase; 94.4 0.031 6.6E-07 54.6 3.0 24 118-141 3-26 (184)
425 PRK13948 shikimate kinase; Pro 94.3 0.059 1.3E-06 52.9 4.9 28 114-141 8-35 (182)
426 PF06048 DUF927: Domain of unk 94.3 0.072 1.6E-06 56.1 5.9 79 115-252 192-270 (286)
427 KOG3768 DEAD box RNA helicase 94.3 0.086 1.9E-06 58.8 6.4 88 563-650 3-101 (888)
428 COG1102 Cmk Cytidylate kinase 94.3 0.031 6.6E-07 53.3 2.6 23 119-141 3-25 (179)
429 TIGR02538 type_IV_pilB type IV 94.2 0.16 3.4E-06 58.7 8.9 30 112-141 312-341 (564)
430 TIGR01351 adk adenylate kinase 94.2 0.035 7.5E-07 55.6 3.1 23 119-141 2-24 (210)
431 PRK06547 hypothetical protein; 94.2 0.063 1.4E-06 52.2 4.7 26 116-141 15-40 (172)
432 PRK04040 adenylate kinase; Pro 94.2 0.033 7.2E-07 55.0 2.8 24 118-141 4-27 (188)
433 COG1084 Predicted GTPase [Gene 94.2 0.21 4.5E-06 52.8 8.7 34 109-142 161-194 (346)
434 cd01130 VirB11-like_ATPase Typ 94.1 0.072 1.6E-06 52.3 5.1 27 116-142 25-51 (186)
435 COG1855 ATPase (PilT family) [ 94.1 0.049 1.1E-06 59.5 4.0 41 97-142 249-289 (604)
436 PRK10078 ribose 1,5-bisphospho 94.0 0.038 8.1E-07 54.2 2.9 25 117-141 3-27 (186)
437 PRK04132 replication factor C 94.0 0.03 6.6E-07 66.8 2.6 47 86-132 10-56 (846)
438 cd02027 APSK Adenosine 5'-phos 94.0 0.037 8E-07 52.4 2.7 23 119-141 2-24 (149)
439 PRK00279 adk adenylate kinase; 94.0 0.04 8.6E-07 55.3 3.1 24 118-141 2-25 (215)
440 PRK05541 adenylylsulfate kinas 94.0 0.037 8E-07 53.6 2.7 25 117-141 8-32 (176)
441 PRK14527 adenylate kinase; Pro 94.0 0.042 9.1E-07 54.1 3.1 25 117-141 7-31 (191)
442 PRK03731 aroL shikimate kinase 94.0 0.062 1.3E-06 51.7 4.2 25 117-141 3-27 (171)
443 PLN02200 adenylate kinase fami 93.9 0.041 9E-07 56.2 3.1 24 118-141 45-68 (234)
444 PF00485 PRK: Phosphoribulokin 93.9 0.035 7.5E-07 54.8 2.4 23 119-141 2-24 (194)
445 cd02023 UMPK Uridine monophosp 93.9 0.042 9.2E-07 54.2 3.0 23 119-141 2-24 (198)
446 PTZ00088 adenylate kinase 1; P 93.9 0.043 9.4E-07 55.9 3.0 24 118-141 8-31 (229)
447 TIGR03263 guanyl_kin guanylate 93.9 0.042 9.2E-07 53.2 2.9 24 118-141 3-26 (180)
448 PHA02530 pseT polynucleotide k 93.8 0.043 9.2E-07 57.9 3.0 24 118-141 4-27 (300)
449 PLN02165 adenylate isopentenyl 93.8 0.067 1.5E-06 57.2 4.3 29 113-141 40-68 (334)
450 TIGR01618 phage_P_loop phage n 93.8 0.035 7.7E-07 56.1 2.1 22 116-137 12-33 (220)
451 PRK14528 adenylate kinase; Pro 93.7 0.048 1E-06 53.6 3.0 24 118-141 3-26 (186)
452 COG4619 ABC-type uncharacteriz 93.7 0.051 1.1E-06 52.2 3.0 26 117-142 30-55 (223)
453 cd03243 ABC_MutS_homologs The 93.7 0.13 2.8E-06 51.1 6.2 23 117-139 30-52 (202)
454 PTZ00202 tuzin; Provisional 93.7 0.11 2.3E-06 57.5 5.7 52 90-141 257-311 (550)
455 TIGR03574 selen_PSTK L-seryl-t 93.7 0.042 9.2E-07 56.5 2.7 23 119-141 2-24 (249)
456 PRK00300 gmk guanylate kinase; 93.7 0.05 1.1E-06 53.9 3.1 25 117-141 6-30 (205)
457 cd00071 GMPK Guanosine monopho 93.7 0.053 1.2E-06 50.6 3.0 23 119-141 2-24 (137)
458 TIGR02782 TrbB_P P-type conjug 93.6 0.083 1.8E-06 56.0 4.8 27 115-141 131-157 (299)
459 PRK13851 type IV secretion sys 93.6 0.083 1.8E-06 57.1 4.8 28 115-142 161-188 (344)
460 PF03731 Ku_N: Ku70/Ku80 N-ter 93.5 0.38 8.1E-06 48.5 9.2 88 564-651 2-120 (224)
461 TIGR02533 type_II_gspE general 93.5 0.29 6.2E-06 55.5 9.1 48 93-141 220-267 (486)
462 PF01583 APS_kinase: Adenylyls 93.5 0.052 1.1E-06 51.9 2.7 24 118-141 4-27 (156)
463 cd02024 NRK1 Nicotinamide ribo 93.4 0.076 1.6E-06 52.4 3.8 25 119-143 2-26 (187)
464 KOG1968 Replication factor C, 93.3 0.28 6.1E-06 58.9 9.0 23 119-141 360-382 (871)
465 PRK04182 cytidylate kinase; Pr 93.3 0.065 1.4E-06 51.5 3.2 24 118-141 2-25 (180)
466 PRK00889 adenylylsulfate kinas 93.3 0.057 1.2E-06 52.2 2.7 24 118-141 6-29 (175)
467 PRK13946 shikimate kinase; Pro 93.3 0.092 2E-06 51.4 4.1 26 116-141 10-35 (184)
468 PRK06696 uridine kinase; Valid 93.3 0.11 2.3E-06 52.6 4.8 24 118-141 24-47 (223)
469 PRK09825 idnK D-gluconate kina 93.3 0.067 1.5E-06 52.2 3.1 24 118-141 5-28 (176)
470 COG5148 RPN10 26S proteasome r 93.2 0.45 9.7E-06 46.1 8.4 89 563-651 5-100 (243)
471 TIGR02173 cyt_kin_arch cytidyl 93.2 0.072 1.6E-06 50.9 3.2 23 119-141 3-25 (171)
472 cd01918 HprK_C HprK/P, the bif 93.2 0.073 1.6E-06 50.5 3.1 25 115-139 13-37 (149)
473 PRK14526 adenylate kinase; Pro 93.2 0.069 1.5E-06 53.7 3.1 24 118-141 2-25 (211)
474 cd01478 Sec23-like Sec23-like: 93.1 0.52 1.1E-05 49.2 9.6 44 561-607 3-46 (267)
475 PLN03210 Resistant to P. syrin 93.1 0.11 2.3E-06 65.3 5.2 51 91-141 180-232 (1153)
476 PRK10436 hypothetical protein; 93.1 0.4 8.6E-06 53.9 9.2 48 93-141 196-243 (462)
477 PF13555 AAA_29: P-loop contai 93.1 0.086 1.9E-06 42.3 2.9 24 118-141 25-48 (62)
478 PF05707 Zot: Zonular occluden 93.0 0.22 4.7E-06 49.2 6.5 60 224-296 79-144 (193)
479 PF12780 AAA_8: P-loop contain 93.0 0.19 4.1E-06 52.5 6.2 26 115-140 30-55 (268)
480 PF08477 Miro: Miro-like prote 93.0 0.077 1.7E-06 47.3 2.9 23 119-141 2-24 (119)
481 PF03029 ATP_bind_1: Conserved 93.0 0.048 1E-06 55.9 1.7 36 121-157 1-36 (238)
482 cd01124 KaiC KaiC is a circadi 93.0 0.071 1.5E-06 51.7 2.8 22 119-140 2-23 (187)
483 PRK13833 conjugal transfer pro 92.9 0.12 2.7E-06 55.2 4.7 27 115-141 143-169 (323)
484 cd02028 UMPK_like Uridine mono 92.9 0.073 1.6E-06 52.0 2.7 23 119-141 2-24 (179)
485 KOG2383 Predicted ATPase [Gene 92.8 0.033 7.1E-07 60.1 0.2 28 116-143 114-141 (467)
486 PRK13975 thymidylate kinase; P 92.8 0.081 1.8E-06 51.9 3.0 24 118-141 4-27 (196)
487 PRK12339 2-phosphoglycerate ki 92.8 0.087 1.9E-06 52.4 3.2 25 117-141 4-28 (197)
488 PF00931 NB-ARC: NB-ARC domain 92.8 0.11 2.5E-06 53.9 4.2 26 114-139 17-42 (287)
489 PRK06851 hypothetical protein; 92.7 0.11 2.3E-06 56.6 3.9 25 117-141 215-239 (367)
490 COG2805 PilT Tfp pilus assembl 92.6 0.19 4.2E-06 52.6 5.4 27 115-141 124-150 (353)
491 PRK13709 conjugal transfer nic 92.6 0.28 6E-06 63.0 7.9 51 225-288 1063-1117(1747)
492 PRK01184 hypothetical protein; 92.6 0.092 2E-06 51.1 3.0 22 118-140 3-24 (184)
493 cd03281 ABC_MSH5_euk MutS5 hom 92.5 0.24 5.2E-06 49.8 6.0 22 117-138 30-51 (213)
494 COG1061 SSL2 DNA or RNA helica 92.5 0.26 5.7E-06 55.2 6.9 42 100-143 41-82 (442)
495 PF00406 ADK: Adenylate kinase 92.5 0.069 1.5E-06 50.3 1.9 21 121-141 1-21 (151)
496 COG1116 TauB ABC-type nitrate/ 92.4 0.095 2.1E-06 53.5 2.9 26 118-143 31-56 (248)
497 PF01745 IPT: Isopentenyl tran 92.4 0.17 3.8E-06 50.6 4.6 23 119-141 4-26 (233)
498 PRK12338 hypothetical protein; 92.3 0.1 2.2E-06 55.6 3.2 25 117-141 5-29 (319)
499 PLN02674 adenylate kinase 92.3 0.1 2.3E-06 53.6 3.1 26 116-141 31-56 (244)
500 KOG3595 Dyneins, heavy chain [ 92.2 0.82 1.8E-05 58.4 11.4 172 91-314 107-288 (1395)
No 1
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=100.00 E-value=2.1e-83 Score=735.70 Aligned_cols=541 Identities=43% Similarity=0.687 Sum_probs=451.7
Q ss_pred CCCCceechHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccccc
Q 006254 92 FPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEY 171 (653)
Q Consensus 92 ~~f~~IvGq~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~ 171 (653)
|||++||||+.++++|++++++|..+||||+|++|||||++||+|+.++|+++++.+|.|||+|+.+..||..|......
T Consensus 1 ~pf~~ivGq~~~~~al~~~av~~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~ 80 (633)
T TIGR02442 1 FPFTAIVGQEDLKLALLLNAVDPRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRP 80 (633)
T ss_pred CCcchhcChHHHHHHHHHHhhCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999884321
Q ss_pred cccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHHHHHHcC
Q 006254 172 DTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEG 251 (653)
Q Consensus 172 ~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~l~~g 251 (653)
......||+.+|.++++++|+|++|+++++..|...+++|+|.+|++||||||||++|++.+|+.|+.+|++|
T Consensus 81 -------~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~le~g 153 (633)
T TIGR02442 81 -------SEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAAAMG 153 (633)
T ss_pred -------cccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHHHHHHHHHHHhcC
Confidence 1124689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhH
Q 006254 252 VNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDL 331 (653)
Q Consensus 252 ~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~ 331 (653)
.+.|+|+|.+..+|++|+||+|+||+++.|+++|+|||+++|.+..+.+.+++.+|+.+...|..++..|...|......
T Consensus 154 ~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~ 233 (633)
T TIGR02442 154 VNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEE 233 (633)
T ss_pred CEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHH
Confidence 99999999999999999999999999999999999999999999987788889999998888888888888888887778
Q ss_pred HHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHcCCCcccCC
Q 006254 332 AKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVILPRSIINE 411 (653)
Q Consensus 332 l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~hR~~~~~ 411 (653)
+...|..++.+++.|.++++++++|+++|..+|+.|+|+.+.++++|+++|+|+|+++|+.+||.+|+++||.||+++.|
T Consensus 234 l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V~~~Dv~~A~~lvL~hR~~~~p 313 (633)
T TIGR02442 234 LRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVTAEDVREAAELVLPHRRRRKP 313 (633)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHhhhhccCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999998665
Q ss_pred CCCCC---CCC---C-CCCCCCCCCCCCCCcccCccc-ccc-CC-Cccchhhcc---cCCCcccccccCCCCcchhhhHH
Q 006254 412 TPPEQ---QNQ---Q-PPPPPPPQNQDSGEEEQNEEE-DQE-DE-NDEENEQQQ---EQLPEEFIFDAEGGLVDEKLLFF 478 (653)
Q Consensus 412 ~~~~~---~~~---~-~~~~~~~~~~~~~~~~~~~~~-~~~-~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 478 (653)
.+.++ +++ . +++++++..+++++++++++. ++. ++ .+++++.+. .+...+.+++++.. +.++++.+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 392 (633)
T TIGR02442 314 FEQPQGKDEKDLEEKPEEPGPDPEKPDEGEDDAEQSGPRGHPTPGNDDEKEPDPQEEADGQGSSTDPAGDI-FRIRVLAP 392 (633)
T ss_pred cccCCCCCccccccccCCCCCCCCCCCccccccccccccccccccccccccccccCCCCCCcccccCcccc-cCcchhcc
Confidence 32111 110 0 111111100111111000000 000 00 000000000 00011234666553 44566654
Q ss_pred HHHHhhhcCCCCCcccccccCCCCcccccCCCCCCCCCcChhHhHHhhCCcchhhhccccccccceeeecCcchhhhhhc
Q 006254 479 AQQAQRRRGKAGRAKNVIFSEDRGRYIKPMLPKGPIKRLAVDATLRAAAPYQKLRRERDTQKTRKVFVEKTDMRAKRMAR 558 (653)
Q Consensus 479 ~~~~~~~~~~~g~~~~~~~~~~~Gr~~~~~~~~~~~~~i~~~aTl~~aap~q~~r~~~~~~~~~~~~i~~~dl~~~~~~~ 558 (653)
... + .++++||++. ..+..||||+++.++++..++|||++|||+|+|||+.| .+ .+.|+++||+++++++
T Consensus 393 ~~~-~-~~~~~g~~~~-~~~~~rGr~~~~~~~~~~~~~i~~~aTlr~aa~~q~~r------~~-~~~i~~~dl~~~~~~~ 462 (633)
T TIGR02442 393 PQA-R-ARGASGRRSR-TRSDSRGRYVRARRNRGPPDDLAVDATLRAAAPHQRAR------PG-AVAVEPEDLREKIRAG 462 (633)
T ss_pred ccc-c-ccCCCCCCcc-cccCCCCeeeeccCCCCCCCccCHHHHHHHhccccccc------CC-cceechhhhhHHHhcC
Confidence 432 2 2234666553 33458999999998775567899999999999999776 12 6999999999999999
Q ss_pred cCCceEEEEEeCCCCCCh-hHHHHHHHHHHHHHHhHcCCCCeEEEEEeecCCcEEEcCCCcCHHHHHHHHhcCCCCCCCc
Q 006254 559 KAGALVIFVVDASGSMAL-NRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPCGGGSP 637 (653)
Q Consensus 559 ~~~~~v~~vvD~SgSM~~-~r~~~ak~a~~~ll~~ay~~rd~v~li~F~~~~a~~~lp~t~~~~~~~~~L~~l~~gG~Tp 637 (653)
+++..|+||||+||||++ +||..+|+++..|+.++|..+|+||||+|+|..+++++|+|++...+...|..+++||+||
T Consensus 463 r~~~~vv~vvD~SgSM~~~~rl~~ak~a~~~ll~~a~~~~D~v~lI~F~g~~a~~~~p~t~~~~~~~~~L~~l~~gG~Tp 542 (633)
T TIGR02442 463 RAGNLVIFVVDASGSMAARGRMAAAKGAVLSLLRDAYQKRDKVALITFRGEEAEVLLPPTSSVELAARRLEELPTGGRTP 542 (633)
T ss_pred CCCceEEEEEECCccCCCccHHHHHHHHHHHHHHHhhcCCCEEEEEEECCCCceEEcCCCCCHHHHHHHHHhCCCCCCCC
Confidence 999999999999999987 6999999999999999999999999999988789999999999999999999999999999
Q ss_pred hHHHHHHHHHHHh
Q 006254 638 LAHGLSMGWAKCG 650 (653)
Q Consensus 638 l~~gl~~a~~~l~ 650 (653)
|++||..|++++.
T Consensus 543 l~~aL~~A~~~l~ 555 (633)
T TIGR02442 543 LAAGLLKAAEVLS 555 (633)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999887
No 2
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=100.00 E-value=9.4e-81 Score=700.09 Aligned_cols=478 Identities=35% Similarity=0.526 Sum_probs=398.2
Q ss_pred hHHHHHHHHHhcccC-CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccccccccccccccccc
Q 006254 100 QDAIKTALLLGAIDR-EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLK 178 (653)
Q Consensus 100 q~~~k~aL~~~av~p-~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~~~~~~~~ 178 (653)
|+.+|.||++++|+| .+|||||.|++|||||+++|+++.++|.
T Consensus 8 ~~~~~~Al~l~av~p~~~gGv~i~g~~G~~ks~~~r~l~~llp~------------------------------------ 51 (584)
T PRK13406 8 WADAALAAALLAVDPAGLGGVVLRARAGPVRDRWLAALRALLPA------------------------------------ 51 (584)
T ss_pred HHHHHHHHHHhCcCccccceEEEEcCCCcHHHHHHHHHHHhcCC------------------------------------
Confidence 899999999999999 9999999999999999999999999982
Q ss_pred ccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHHHHHHcCceEEeeC
Q 006254 179 TQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVERE 258 (653)
Q Consensus 179 ~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~l~~g~~~v~r~ 258 (653)
..||+.+|.++++++|+|++|+++++..|..+++||+|+.||+|||||||+|++++++++.|+++|++|.++|+|+
T Consensus 52 ----~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~~~~~~~~aLleame~G~vtIeR~ 127 (584)
T PRK13406 52 ----GTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAERLEPGTAARLAAALDTGEVRLERD 127 (584)
T ss_pred ----CCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCcccCCHHHHHHHHHHHhCCcEEEEEC
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEeecCcEEEEEecCC--CCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHH
Q 006254 259 GISFKHPCKPLLIATYNPE--EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQI 336 (653)
Q Consensus 259 G~s~~~p~~~~lIattNp~--eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i 336 (653)
|.++.+|++|+||||.|+. ++.|+++|+|||+++|++..+...+.+. ......+|
T Consensus 128 G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~~~~~~~~-----------------------~~~~~~~I 184 (584)
T PRK13406 128 GLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDGLALRDARE-----------------------IPIDADDI 184 (584)
T ss_pred CcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCCCChHHhcc-----------------------cCCCHHHH
Confidence 9999999999999997753 4569999999999999999664433210 01223488
Q ss_pred HHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHcCCCcccCCCCCCC
Q 006254 337 ILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVILPRSIINETPPEQ 416 (653)
Q Consensus 337 ~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~hR~~~~~~~~~~ 416 (653)
..||+.+++|.++++++++++++|..+|+.|+|+.+.++++|+++|+|+|+++|+.+||.+|+.|||.||++..|.+++
T Consensus 185 ~~AR~rl~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~~Aa~lvL~hR~~~~p~~~~- 263 (584)
T PRK13406 185 AAARARLPAVGPPPEAIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLALAARLVLAPRATRLPAPPQ- 263 (584)
T ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhccCCCCCCC-
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999986653221
Q ss_pred CCCCCCCCCCCCCCCCCCcccCccccccCCCccchhhcccCCCcccccccCCCCcchhhhHHHHH--HhhhcCCCCCccc
Q 006254 417 QNQQPPPPPPPQNQDSGEEEQNEEEDQEDENDEENEQQQEQLPEEFIFDAEGGLVDEKLLFFAQQ--AQRRRGKAGRAKN 494 (653)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~ 494 (653)
+++++|+|++ +.++++++ +++ +++ + ++. +....+++.++++....++++.+.+... .+.+++++||++.
T Consensus 264 -~~~~~~~~~~-~~~~~~~~-~~~--~~~--~-~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~g~ 334 (584)
T PRK13406 264 -PPEEEPPPPP-PPPEDDDD-PPE--DEE--E-QDD-AEDRALEEIVLEAVRAALPPDLLARLAAGGARARARSAGGAGA 334 (584)
T ss_pred -CCCCCCCCCC-CCCCCCcc-ccc--ccc--c-ccc-CCCCCchhhccccccccCChhhhhhcccccccccccCCCCccc
Confidence 1111111111 11111000 000 000 0 000 0011245668888777788887765531 1222234566555
Q ss_pred ccccCCCCcccccCCCCCC-CCCcChhHhHHhhCCcchhhhccccccccceeeecCcchhhhhhccCCceEEEEEeCCCC
Q 006254 495 VIFSEDRGRYIKPMLPKGP-IKRLAVDATLRAAAPYQKLRRERDTQKTRKVFVEKTDMRAKRMARKAGALVIFVVDASGS 573 (653)
Q Consensus 495 ~~~~~~~Gr~~~~~~~~~~-~~~i~~~aTl~~aap~q~~r~~~~~~~~~~~~i~~~dl~~~~~~~~~~~~v~~vvD~SgS 573 (653)
.+....||||+++++++.. +.+|||++|||+|||||+.|++.. +.+..+.|+++|||+|+++.+++..++||||+|||
T Consensus 335 ~~~~~~rGr~~~~~~~~~~~~~~l~~~aTlraAap~Q~~r~~~~-~~~~~~~i~~~Dlr~k~~~~~~~~~vvfvvD~SGS 413 (584)
T PRK13406 335 AQKGNRRGRPLGSRPGEPRGGARLDLIETLRAAAPWQPLRRRQA-GTARRLLVRPDDFRIRRFKQRSETTTIFVVDASGS 413 (584)
T ss_pred ccccCCCcccccccCCCCCCCCcccHHHHHHHhhhhhhhccccc-CCCCcceecHHHceehhhhccCCccEEEEEECCCC
Confidence 5566799999999887632 347999999999999999988642 23357999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHhHcCCCCeEEEEEeecCCcEEEcCCCcCHHHHHHHHhcCCCCCCCchHHHHHHHHHHHhh
Q 006254 574 MALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPCGGGSPLAHGLSMGWAKCGE 651 (653)
Q Consensus 574 M~~~r~~~ak~a~~~ll~~ay~~rd~v~li~F~~~~a~~~lp~t~~~~~~~~~L~~l~~gG~Tpl~~gl~~a~~~l~~ 651 (653)
|.++||..+|+++..|+.++|+.+|+|+||+|+|+.+++++|+|+++..+.+.|+.+++||+|||++||..|++++..
T Consensus 414 M~~~rl~~aK~a~~~ll~~ay~~rD~v~lI~F~g~~a~~~lppT~~~~~~~~~L~~l~~gGgTpL~~gL~~A~~~l~~ 491 (584)
T PRK13406 414 AALHRLAEAKGAVELLLAEAYVRRDQVALVAFRGRGAELLLPPTRSLVRAKRSLAGLPGGGGTPLAAGLDAAAALALQ 491 (584)
T ss_pred CcHhHHHHHHHHHHHHHHhhcCCCCEEEEEEECCCceeEEcCCCcCHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHH
Confidence 988999999999999999999999999999999888999999999999999999999999999999999999998754
No 3
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=100.00 E-value=4.1e-79 Score=693.11 Aligned_cols=494 Identities=51% Similarity=0.764 Sum_probs=413.3
Q ss_pred HHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccccccccccccccccccc
Q 006254 101 DAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQ 180 (653)
Q Consensus 101 ~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (653)
+.+|.||++++|+|.+|||||.|+||||||++||+||..++.
T Consensus 1 ~~~~~Al~l~av~p~~g~vLl~G~~GtgKs~lar~l~~~~~~-------------------------------------- 42 (589)
T TIGR02031 1 ERAKLALTLLAVDPSLGGVAIRARAGTGKTALARALAEILPP-------------------------------------- 42 (589)
T ss_pred ChHHHHHHHhccCCCcceEEEEcCCCcHHHHHHHHHHHhCCc--------------------------------------
Confidence 368999999999999999999999999999999999999872
Q ss_pred ccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHHHHHHcCceEEeeCCe
Q 006254 181 IARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGI 260 (653)
Q Consensus 181 ~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~l~~g~~~v~r~G~ 260 (653)
..||+.++.+.+++.|+|++|+++++.+|...+++|+|.+||+|||||||||++++++|+.|+.+|++|.++++|+|.
T Consensus 43 --~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~ 120 (589)
T TIGR02031 43 --IMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLLDDGLSNRLLQALDEGVVIVEREGI 120 (589)
T ss_pred --CCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhCCHHHHHHHHHHHHcCCeEEEECCC
Confidence 458999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeecCcEEEEEecCCC--CcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHH
Q 006254 261 SFKHPCKPLLIATYNPEE--GVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIIL 338 (653)
Q Consensus 261 s~~~p~~~~lIattNp~e--g~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 338 (653)
+..+|++|+||+|+||++ +.|+++|+|||+++|.+..++..++|.+|+++.. ..|...+......+..+|..
T Consensus 121 ~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~~~er~eil~~~~------~~~~~~~~~~~~~~~~~i~~ 194 (589)
T TIGR02031 121 SVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVASQDLRVEIVRRER------CNEVFRMNDELELLRGQIEA 194 (589)
T ss_pred ceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCCHHHHHHHHHHHH------HhhhhhcchhhHHHHHHHHH
Confidence 999999999999999977 8999999999999999988888888999998754 22444555667788999999
Q ss_pred HHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHcCCCcccCCCCCCCCC
Q 006254 339 AREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVILPRSIINETPPEQQN 418 (653)
Q Consensus 339 ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~hR~~~~~~~~~~~~ 418 (653)
+++.++.|.++++++++|+++|...|+.|+|+.+.++++|+++|+|+|+++|+++||++|+.+||.||++..|.+++++
T Consensus 195 ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aal~gr~~V~~~Dv~~a~~lvl~hR~~~~p~~~~~~- 273 (589)
T TIGR02031 195 ARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKAHAALHGRTEVTEEDLKLAVELVLLPRATRLPEPEPQP- 273 (589)
T ss_pred HHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhccCCCCCCCCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998655321111
Q ss_pred CCCCCCCCCCCCCCCCcccCccccccCCCccchhhcccCCCcccccccCCCCcchhhhHHHHHHhhhcCCCCCccccccc
Q 006254 419 QQPPPPPPPQNQDSGEEEQNEEEDQEDENDEENEQQQEQLPEEFIFDAEGGLVDEKLLFFAQQAQRRRGKAGRAKNVIFS 498 (653)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 498 (653)
+++|+ +++++++++.+++++ +.+. + ++.++.+.++|.++++....++++++....... ++ .|+++..+..
T Consensus 274 -~~~~~-~~~~~~~~~~~~~~~--~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~ 343 (589)
T TIGR02031 274 -PPPPP-PPEPPEPEEEPDEPD--QTDP-D--DGEETDQIPEELMFDAVEADLPDNILATLQTVQ-RR--RGRAGGEQKS 343 (589)
T ss_pred -CCCCC-CCCCCCCcccCcCcc--cCCC-C--ccccccCCccccccCccccccChhhhhccchhc-cc--cCCCCccccc
Confidence 11111 111111110000000 0000 0 011111234677888888778888776554322 11 1222334445
Q ss_pred CCCCcccccCCCC-CCCCCcChhHhHHhhCCcchhhhccccccccceeeecCcchhhhhhccCCceEEEEEeCCCCCChh
Q 006254 499 EDRGRYIKPMLPK-GPIKRLAVDATLRAAAPYQKLRRERDTQKTRKVFVEKTDMRAKRMARKAGALVIFVVDASGSMALN 577 (653)
Q Consensus 499 ~~~Gr~~~~~~~~-~~~~~i~~~aTl~~aap~q~~r~~~~~~~~~~~~i~~~dl~~~~~~~~~~~~v~~vvD~SgSM~~~ 577 (653)
..||||+++.+++ +...+|||++|||+|||||+.|++.......+++++++|||+|+++.+++..++||||+||||+++
T Consensus 344 ~~rGr~~~~~~~~~~~~~~i~~~aTlraAap~q~~r~~~~~~~~~~~~~~~~dl~~k~~~~~~~~~v~fvvD~SGSM~~~ 423 (589)
T TIGR02031 344 NHRGRPLRSRLGKPGSGARVDLVATLRAAAPWQRLRREENPAGTRGLIVEASDIRIKRYRRKSGRLLIFVVDASGSAAVA 423 (589)
T ss_pred CCCcccccccCCCCCCCCcccHHHHHHHhCcccccccccCCCcccceEeecccceEEeeccccCceEEEEEECCCCCChH
Confidence 6899999998876 445689999999999999999986433233479999999999999999999999999999999989
Q ss_pred HHHHHHHHHHHHHHhHcCCCCeEEEEEeecCCcEEEcCCCcCHHHHHHHHhcCCCCCCCchHHHHHHHHHHHhh
Q 006254 578 RMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPCGGGSPLAHGLSMGWAKCGE 651 (653)
Q Consensus 578 r~~~ak~a~~~ll~~ay~~rd~v~li~F~~~~a~~~lp~t~~~~~~~~~L~~l~~gG~Tpl~~gl~~a~~~l~~ 651 (653)
||..+|+++..|+.++|..+|+|+||+|++..+++++|+|++...+.+.|..+++||+|||++||..|++.+.+
T Consensus 424 rl~~aK~av~~Ll~~~~~~~D~v~Li~F~~~~a~~~lp~t~~~~~~~~~L~~l~~gGgTpL~~gL~~A~~~~~~ 497 (589)
T TIGR02031 424 RMSEAKGAVELLLGEAYVHRDQVSLIAFRGTAAEVLLPPSRSVEQAKRRLDVLPGGGGTPLAAGLAAAFQTALQ 497 (589)
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEEEECCCCceEECCCCCCHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998887899999999999999999999999999999999999998864
No 4
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=100.00 E-value=1e-66 Score=548.99 Aligned_cols=321 Identities=42% Similarity=0.694 Sum_probs=310.0
Q ss_pred CCCCCCceechHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccc
Q 006254 90 QFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKA 169 (653)
Q Consensus 90 ~~~~f~~IvGq~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~ 169 (653)
..|||++|+||+.+|.+|++++++|..+||||.|++||||||++|+|+.+||+++++.+|+|||||++|.+||+.|..+.
T Consensus 12 ~~~pf~aivGqd~lk~aL~l~av~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~~k~ 91 (423)
T COG1239 12 ENLPFTAIVGQDPLKLALGLNAVDPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECRAKG 91 (423)
T ss_pred hccchhhhcCchHHHHHHhhhhcccccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhHHHHhhc
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred cccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHHHHHH
Q 006254 170 EYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLT 249 (653)
Q Consensus 170 ~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~l~ 249 (653)
. ....+....+..+|+.+|.++++|+|+|++|+++++..|...|+||+|++||+|||||||||+|++++|+.||++++
T Consensus 92 ~--e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lvd~LLd~aa 169 (423)
T COG1239 92 D--ELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLVDALLDVAA 169 (423)
T ss_pred c--ccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHHHHHHHHHHH
Confidence 2 22555666678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhhhhhh
Q 006254 250 EGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEET 329 (653)
Q Consensus 250 ~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~ 329 (653)
+|++.|+|+|.+++||++|+|||||||++|+|+++|+|||++.|.+..|.+.+.|.+|+++.+.|..+|..|.++|...+
T Consensus 170 eG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~f~~~Pe~f~~~~~~~~ 249 (423)
T COG1239 170 EGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLAFEAVPEAFLEKYADAQ 249 (423)
T ss_pred hCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHcCCCccc
Q 006254 330 DLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVILPRSII 409 (653)
Q Consensus 330 ~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~hR~~~ 409 (653)
..++.+|..|+++++.|.+++++..++++.|.++++.++|+++.+.++++++|+|.|+.+|+.+|+++|+.++++||++.
T Consensus 250 ~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~~~v~g~radi~~~r~a~a~aa~~Gr~~v~~~Di~~a~~l~l~hR~~~ 329 (423)
T COG1239 250 RALRARIIAARSLLSEVELDDDAETKIAELCARLAVDGHRADIVVVRAAKALAALRGRTEVEEEDIREAAELALLHRRRR 329 (423)
T ss_pred HHHHHHHHHHHhccccccCcHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHhcCceeeehhhHHHHHhhhhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCC
Q 006254 410 NET 412 (653)
Q Consensus 410 ~~~ 412 (653)
.+.
T Consensus 330 ~~~ 332 (423)
T COG1239 330 KPF 332 (423)
T ss_pred ccc
Confidence 654
No 5
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=100.00 E-value=1.1e-56 Score=475.66 Aligned_cols=320 Identities=38% Similarity=0.606 Sum_probs=299.2
Q ss_pred CCCCCCCCceechHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccc
Q 006254 88 GRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDE 167 (653)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~ 167 (653)
.+..|||++||||+++|++|++++++|..+||||.|++|||||++||++++++++..++.+|+|||+|++|++||+.|..
T Consensus 10 ~~~~~pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~~~~~~~ 89 (350)
T CHL00081 10 ERPVFPFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMSDEVRE 89 (350)
T ss_pred cCCCCCHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhhchhhhh
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred cccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHHHH
Q 006254 168 KAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNV 247 (653)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~ 247 (653)
+...+ ..........||+.+|.++++++|+|++|+++++..|...+++|+|.+|++|||||||||++++.+|+.|+++
T Consensus 90 ~~~~~--~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~LLea 167 (350)
T CHL00081 90 AIQNG--ETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDILLDS 167 (350)
T ss_pred hhccc--ccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHHHHHHH
Confidence 65311 1112233478999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhhhh
Q 006254 248 LTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEE 327 (653)
Q Consensus 248 l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~ 327 (653)
|++|.++++|+|.+..+|.+|++|+|+||.++.|+++|+|||+++|.+..|.+.+.+.+|+++...+..++..|.+.|..
T Consensus 168 m~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~~~~~~~~~~~~~~~~ 247 (350)
T CHL00081 168 AASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRTSFDKNPQEFREKYEE 247 (350)
T ss_pred HHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhhhccccChhhhhhhhcc
Confidence 99999999999999999999999999999999999999999999999998877899999999988887788888888877
Q ss_pred hhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHcCCCc
Q 006254 328 ETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVILPRS 407 (653)
Q Consensus 328 ~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~hR~ 407 (653)
.+..+...|..+++.++.|.++++++++++++|...++.|+|+.+.++++|+++|+++||++|+++||+.++.+||.||.
T Consensus 248 ~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~pdDv~~~a~~vL~HR~ 327 (350)
T CHL00081 248 SQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAFEGRTEVTPKDIFKVITLCLRHRL 327 (350)
T ss_pred ccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhC
Confidence 77788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc
Q 006254 408 II 409 (653)
Q Consensus 408 ~~ 409 (653)
+.
T Consensus 328 ~~ 329 (350)
T CHL00081 328 RK 329 (350)
T ss_pred cC
Confidence 73
No 6
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=100.00 E-value=4.4e-53 Score=448.46 Aligned_cols=316 Identities=38% Similarity=0.616 Sum_probs=294.2
Q ss_pred CCCCceechHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccccc
Q 006254 92 FPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEY 171 (653)
Q Consensus 92 ~~f~~IvGq~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~ 171 (653)
|||+.||||+++|++|++++++|..++|+|.|++||||||++|+|+..++.++...+|++||+|.++..||+.|+.+.+.
T Consensus 1 ~pf~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 80 (337)
T TIGR02030 1 FPFTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRVDS 80 (337)
T ss_pred CCccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhhhc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999875432
Q ss_pred cccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHHHHHHcC
Q 006254 172 DTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEG 251 (653)
Q Consensus 172 ~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~l~~g 251 (653)
.. .........||+.+|.++++++++|++|+++++.+|..++++|++.+|++|+|||||||+|++.+|+.|+++|++|
T Consensus 81 ~~--~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~Ll~~l~~g 158 (337)
T TIGR02030 81 QE--PLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHLVDVLLDVAASG 158 (337)
T ss_pred cc--ccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHHHHHHHHHHHhC
Confidence 10 1112234689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhH
Q 006254 252 VNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDL 331 (653)
Q Consensus 252 ~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~ 331 (653)
.++++|+|.+..+|.+|++|+|+||.++.|+++|+|||++++.+..|.+.+++.+|+++...+..++..|.+.+..++..
T Consensus 159 ~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~ 238 (337)
T TIGR02030 159 WNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEA 238 (337)
T ss_pred CeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhc
Confidence 99999999999999999999999999999999999999999999988777999999998877766777777778877888
Q ss_pred HHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHcCCCccc
Q 006254 332 AKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVILPRSII 409 (653)
Q Consensus 332 l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~hR~~~ 409 (653)
+...|..+++.++.|.++++++++++++|...++.|+|+.+.++++|+++|+++||++|+++||+.++.+||.||.+.
T Consensus 239 ~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~~dDv~~~a~~vL~HR~~~ 316 (337)
T TIGR02030 239 LQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFEGRTEVTVDDIRRVAVLALRHRLRK 316 (337)
T ss_pred CHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhCcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999974
No 7
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=100.00 E-value=3.8e-49 Score=417.50 Aligned_cols=312 Identities=36% Similarity=0.578 Sum_probs=283.0
Q ss_pred CCCCCCCceechHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccccccc
Q 006254 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (653)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~ 168 (653)
+.+++|++|+||+.++++|++++++++.+||||.|+||||||++||+++.++|++..+++|+++|++. ++|..+...
T Consensus 2 ~~~~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~---~~~~~~~~~ 78 (334)
T PRK13407 2 KKPFPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARP---EDCPEWAHV 78 (334)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcc---cCCcccccc
Confidence 45899999999999999999999988889999999999999999999999999999999999999742 333222111
Q ss_pred ccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHHHHH
Q 006254 169 AEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVL 248 (653)
Q Consensus 169 ~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~l 248 (653)
. . ........||+.+|.++++++++|++|+++++.+|...+++|++.+||+|+|||||||++++.+|+.|+++|
T Consensus 79 ~---~---~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~m 152 (334)
T PRK13407 79 S---S---TTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVA 152 (334)
T ss_pred c---C---CcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHH
Confidence 0 0 011123589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhhhhh
Q 006254 249 TEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEE 328 (653)
Q Consensus 249 ~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~ 328 (653)
+++.++++++|.+..+|++|++|+|+||.++.++++|+|||.++|.+..|.+.++|.+|+.+...+..++..|...|...
T Consensus 153 ee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~ 232 (334)
T PRK13407 153 QSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAE 232 (334)
T ss_pred HcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhcccccc
Confidence 99999999999999999999999999999999999999999999999988788999999998877766677777777777
Q ss_pred hhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHcCCCcc
Q 006254 329 TDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVILPRSI 408 (653)
Q Consensus 329 ~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~hR~~ 408 (653)
......+|..+++.++.|.++++++++++++|...++.|+|+.+.++++|+++|+++||++|+++||+.++.++|.||.+
T Consensus 233 ~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~~aA~a~A~l~Gr~~V~~~Di~~~~~~vl~hR~~ 312 (334)
T PRK13407 233 DMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELTLLRAARALAAFEGAEAVGRSHLRSVATMALSHRLR 312 (334)
T ss_pred ccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHcCCCeeCHHHHHHHHHHhhhhhcc
Confidence 77888999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred c
Q 006254 409 I 409 (653)
Q Consensus 409 ~ 409 (653)
.
T Consensus 313 ~ 313 (334)
T PRK13407 313 R 313 (334)
T ss_pred C
Confidence 3
No 8
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.98 E-value=1.1e-32 Score=270.34 Aligned_cols=176 Identities=34% Similarity=0.492 Sum_probs=117.6
Q ss_pred CCCceechHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccccccccccc
Q 006254 93 PLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYD 172 (653)
Q Consensus 93 ~f~~IvGq~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~~ 172 (653)
+|++|+||+.+|+||+++++ +.++|||+||||||||++|+.+..+||+++..+.+.... .++
T Consensus 1 Df~dI~GQe~aKrAL~iAAa--G~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~----------------i~s 62 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA--GGHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSK----------------IYS 62 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH--CC--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS------------------S-T
T ss_pred ChhhhcCcHHHHHHHHHHHc--CCCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhcc----------------ccc
Confidence 48999999999999999999 468999999999999999999999999887654332221 111
Q ss_pred ccc--cccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHHHHHHc
Q 006254 173 TAG--NLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTE 250 (653)
Q Consensus 173 ~~~--~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~l~~ 250 (653)
..+ .........||+.++.+++...|+| |...++||.++.||+|||||||++.+++++++.|++.|++
T Consensus 63 ~~~~~~~~~~~~~~Pfr~phhs~s~~~liG----------gg~~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~ 132 (206)
T PF01078_consen 63 VAGLGPDEGLIRQRPFRAPHHSASEAALIG----------GGRPPRPGEISLAHRGVLFLDELNEFDRSVLDALRQPLED 132 (206)
T ss_dssp T---S---EEEE---EEEE-TT--HHHHHE----------EGGGEEE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHH
T ss_pred cccCCCCCceecCCCcccCCCCcCHHHHhC----------CCcCCCcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHC
Confidence 111 1222345789999999999999999 4458999999999999999999999999999999999999
Q ss_pred CceEEeeCCeeEEeecCcEEEEEecCCC----------------------CcccHHHHhhhccccccc
Q 006254 251 GVNIVEREGISFKHPCKPLLIATYNPEE----------------------GVVREHLLDRIAINLSAD 296 (653)
Q Consensus 251 g~~~v~r~G~s~~~p~~~~lIattNp~e----------------------g~l~~aLldRf~~~v~l~ 296 (653)
|.++++|.|.++.+|++|+||+||||++ ..++.+|+|||+++|.++
T Consensus 133 g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllDRiDi~v~~~ 200 (206)
T PF01078_consen 133 GEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLDRIDIHVEVP 200 (206)
T ss_dssp SBEEEEETTEEEEEB--EEEEEEE-S------------------------------------------
T ss_pred CeEEEEECCceEEEecccEEEEEecccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999965 247789999999999886
No 9
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.97 E-value=3.3e-30 Score=285.43 Aligned_cols=274 Identities=22% Similarity=0.303 Sum_probs=208.5
Q ss_pred CCCCceechHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccccc
Q 006254 92 FPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEY 171 (653)
Q Consensus 92 ~~f~~IvGq~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~ 171 (653)
..|.++.|+..+++++.+++. ...+++|.|++|+|||++++.|+.++++... ++. ++...-+
T Consensus 188 ~d~~~v~Gq~~~~~al~laa~--~G~~llliG~~GsGKTtLak~L~gllpp~~g-------------~e~---le~~~i~ 249 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITAA--GGHNLLLIGPPGTGKTMLASRINGLLPDLSN-------------EEA---LESAAIL 249 (506)
T ss_pred cCeEEEECcHHHHhhhheecc--CCcEEEEECCCCCcHHHHHHHHhccCCCCCC-------------cEE---Eecchhh
Confidence 478999999999999977665 5577999999999999999999999985421 111 1110011
Q ss_pred ccccccc--ccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHHHHHH
Q 006254 172 DTAGNLK--TQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLT 249 (653)
Q Consensus 172 ~~~~~~~--~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~l~ 249 (653)
+..+... ......||+..|.+++...++| |....+||.++.||+||||||||+.+++.+++.|+++|+
T Consensus 250 s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~G----------Gg~~~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE 319 (506)
T PRK09862 250 SLVNAESVQKQWRQRPFRSPHHSASLTAMVG----------GGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIE 319 (506)
T ss_pred hhhccccccCCcCCCCccCCCccchHHHHhC----------CCceehhhHhhhccCCEEecCCchhCCHHHHHHHHHHHH
Confidence 1111111 1114689999999999999999 556789999999999999999999999999999999999
Q ss_pred cCceEEeeCCeeEEeecCcEEEEEecCCC--------------------CcccHHHHhhhcccccccCCCCHh-------
Q 006254 250 EGVNIVEREGISFKHPCKPLLIATYNPEE--------------------GVVREHLLDRIAINLSADLPMTFE------- 302 (653)
Q Consensus 250 ~g~~~v~r~G~s~~~p~~~~lIattNp~e--------------------g~l~~aLldRf~~~v~l~~p~~~~------- 302 (653)
+|.+++.|.|.+..+|++|++|+||||++ +.++.+|+|||+++|.++.+ +.+
T Consensus 320 ~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~-~~~~l~~~~~ 398 (506)
T PRK09862 320 SGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLP-PPGILSKTVV 398 (506)
T ss_pred cCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCC-CHHHHhcccC
Confidence 99999999999999999999999999975 24788999999999999854 222
Q ss_pred ---hHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 006254 303 ---DRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAK 379 (653)
Q Consensus 303 ---~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ar 379 (653)
...+|.+++....+. ....+..+..++ ..+.....+.+++++.+.+.+.+.+.++ |+|+...++++||
T Consensus 399 ~~ess~~i~~rV~~ar~~-------q~~r~~~~n~~l-~~~~l~~~~~l~~~~~~~l~~~~~~~~l-S~Ra~~rlLrvAR 469 (506)
T PRK09862 399 PGESSATVKQRVMAARER-------QFKRQNKLNAWL-DSPEIRQFCKLESEDARWLEETLIHLGL-SIRAWQRLLKVAR 469 (506)
T ss_pred CCCChHHHHHHHhhHHHH-------HHHHHHHHhccc-CHHHHHHHhCCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 233333333222110 000001111111 1334445578999998888888888887 7999999999999
Q ss_pred HHHHHcCCCCccHHHHHHHHHHHc
Q 006254 380 CLAALEGREKVNVDDLKKAVELVI 403 (653)
Q Consensus 380 a~Aal~gr~~Vt~eDv~~A~~lvl 403 (653)
++|+|+|+++|+.+||.+|+.|--
T Consensus 470 TiADL~g~~~V~~~hv~eAl~yR~ 493 (506)
T PRK09862 470 TIADIDQSDIITRQHLQEAVSYRA 493 (506)
T ss_pred HHHHHcCCCCCCHHHHHHHHHhhc
Confidence 999999999999999999999863
No 10
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=99.97 E-value=1.8e-30 Score=257.83 Aligned_cols=151 Identities=52% Similarity=0.841 Sum_probs=136.4
Q ss_pred CCCCCcccccccCCCCcccccCCCCCCCCCcChhHhHHhhCCcchhhhccccccccceeeecCcchhhhhhccCCceEEE
Q 006254 487 GKAGRAKNVIFSEDRGRYIKPMLPKGPIKRLAVDATLRAAAPYQKLRRERDTQKTRKVFVEKTDMRAKRMARKAGALVIF 566 (653)
Q Consensus 487 ~~~g~~~~~~~~~~~Gr~~~~~~~~~~~~~i~~~aTl~~aap~q~~r~~~~~~~~~~~~i~~~dl~~~~~~~~~~~~v~~ 566 (653)
+.+|++...... .+|+|+++ .|.+...+|+|++||++|+. +...|+++||+.++++.+.+.+|+|
T Consensus 19 ~~~G~~s~~~~~-~rG~~~~~-~~~~~~~~i~~~aTLraA~~-------------g~~~i~p~Dlr~~~r~~r~g~lvvf 83 (261)
T COG1240 19 GTSGRRSAARSG-RRGRYVRA-LPNGPAHRLAVDATLRAAAA-------------GPVAIEPEDLREKIREGRAGNLIVF 83 (261)
T ss_pred CCCCCccccccc-cccccccc-cCCCCcchhhhhhhHHHhhC-------------CCCccCHHHHHHHHhccCcCCcEEE
Confidence 456665555444 89999994 66677789999999999881 3567899999999999999999999
Q ss_pred EEeCCCCCCh-hHHHHHHHHHHHHHHhHcCCCCeEEEEEeecCCcEEEcCCCcCHHHHHHHHhcCCCCCCCchHHHHHHH
Q 006254 567 VVDASGSMAL-NRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPCGGGSPLAHGLSMG 645 (653)
Q Consensus 567 vvD~SgSM~~-~r~~~ak~a~~~ll~~ay~~rd~v~li~F~~~~a~~~lp~t~~~~~~~~~L~~l~~gG~Tpl~~gl~~a 645 (653)
|||+||||+. .||++||+++.+||.+||++||+|+||+|+|+.++++||||++++.++++|..+++||+|||++||..|
T Consensus 84 vVDASgSM~~~~Rm~aaKG~~~~lL~dAYq~RdkvavI~F~G~~A~lll~pT~sv~~~~~~L~~l~~GG~TPL~~aL~~a 163 (261)
T COG1240 84 VVDASGSMAARRRMAAAKGAALSLLRDAYQRRDKVAVIAFRGEKAELLLPPTSSVELAERALERLPTGGKTPLADALRQA 163 (261)
T ss_pred EEeCcccchhHHHHHHHHHHHHHHHHHHHHccceEEEEEecCCcceEEeCCcccHHHHHHHHHhCCCCCCCchHHHHHHH
Confidence 9999999988 599999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhc
Q 006254 646 WAKCGEE 652 (653)
Q Consensus 646 ~~~l~~~ 652 (653)
++++..+
T Consensus 164 ~ev~~r~ 170 (261)
T COG1240 164 YEVLARE 170 (261)
T ss_pred HHHHHHh
Confidence 9998753
No 11
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.6e-30 Score=275.51 Aligned_cols=267 Identities=27% Similarity=0.365 Sum_probs=201.5
Q ss_pred CCCCCceechHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccccccccc
Q 006254 91 FFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAE 170 (653)
Q Consensus 91 ~~~f~~IvGq~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~ 170 (653)
..+|.||+||+.+|++|.+++. +.+++|++||||||||++|+.+..+||++..-+ .++...-
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA--GgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E----------------~lE~s~I 236 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA--GGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPE----------------ALEVSAI 236 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh--cCCcEEEecCCCCchHHhhhhhcccCCCCChHH----------------HHHHHHH
Confidence 4589999999999999999988 778899999999999999999999999865311 1111111
Q ss_pred ccccccc---cccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHHHH
Q 006254 171 YDTAGNL---KTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNV 247 (653)
Q Consensus 171 ~~~~~~~---~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~ 247 (653)
++.++.. .......||+..+.+++...|+| |....+||.++.||+|||||||+-.+...+++.|...
T Consensus 237 ~s~~g~~~~~~~~~~~rPFr~PHHsaS~~aLvG----------GG~~p~PGeIsLAH~GVLFLDElpef~~~iLe~LR~P 306 (490)
T COG0606 237 HSLAGDLHEGCPLKIHRPFRAPHHSASLAALVG----------GGGVPRPGEISLAHNGVLFLDELPEFKRSILEALREP 306 (490)
T ss_pred hhhcccccccCccceeCCccCCCccchHHHHhC----------CCCCCCCCceeeecCCEEEeeccchhhHHHHHHHhCc
Confidence 1111111 01235789999999999999999 5578899999999999999999999999999999999
Q ss_pred HHcCceEEeeCCeeEEeecCcEEEEEecCCC----------------------CcccHHHHhhhcccccccCCCCHhhHH
Q 006254 248 LTEGVNIVEREGISFKHPCKPLLIATYNPEE----------------------GVVREHLLDRIAINLSADLPMTFEDRV 305 (653)
Q Consensus 248 l~~g~~~v~r~G~s~~~p~~~~lIattNp~e----------------------g~l~~aLldRf~~~v~l~~p~~~~~r~ 305 (653)
|++|.++|.|.+..+.+|++|++|++|||++ .+++.+|+|||++.|+++.+ +..++.
T Consensus 307 LE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lDRiDl~vev~~~-~~~e~~ 385 (490)
T COG0606 307 LENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLDRIDLMVEVPRL-SAGELI 385 (490)
T ss_pred cccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHhhhhheecccCC-CHHHhh
Confidence 9999999999999999999999999999965 24778999999999998743 222211
Q ss_pred HHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhh--------cccCCCHHHHHHHH-----------HHHHhcCCC
Q 006254 306 AAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYL--------KDVAIGREQLKYLV-----------MEALRGGCQ 366 (653)
Q Consensus 306 ~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l--------~~v~is~~~l~~l~-----------~~~~~~~i~ 366 (653)
. ..+ ..+....++.++..||+.. -|..++.+.++.+| ....++++
T Consensus 386 ---~------~~~------~~ess~~v~~rVa~AR~~Q~~R~~~~~~Na~l~~~~l~k~~~L~~~~~~~L~~al~~~~l- 449 (490)
T COG0606 386 ---R------QVP------TGESSAGVRERVAKAREAQIARAGRIGINAELSEEALRKFCALQREDADLLKAALERLGL- 449 (490)
T ss_pred ---c------CCC------CCCCcHHHHHHHHHHHHHHHHHhhccCcchhcCHHHHHHhcccCHhHHHHHHHHHHhcch-
Confidence 0 000 0001223333333333221 13344444444433 33445565
Q ss_pred CcchHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHH
Q 006254 367 GHRAELYAARVAKCLAALEGREKVNVDDLKKAVELV 402 (653)
Q Consensus 367 s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~lv 402 (653)
|.|+.-.++++|+++|.|+|.+.|...|+.+|+.|-
T Consensus 450 S~R~~~rILKvarTiADL~g~~~i~~~hl~eAi~yR 485 (490)
T COG0606 450 SARAYHRILKVARTIADLEGSEQIERSHLAEAISYR 485 (490)
T ss_pred hHHHHHHHHHHHhhhhcccCcchhhHHHHHHHHhhh
Confidence 789999999999999999999999999999999875
No 12
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.97 E-value=3.8e-30 Score=278.50 Aligned_cols=237 Identities=28% Similarity=0.412 Sum_probs=200.4
Q ss_pred CCCCCCCceechHHHHHHH--HHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccccc
Q 006254 89 RQFFPLAAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLD 166 (653)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL--~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~ 166 (653)
...|+|++|+|.+..+..+ ++..+++...+|||.|++||||..+|++||+.++
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S~------------------------- 293 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLSP------------------------- 293 (560)
T ss_pred ccccchhhhccCCHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhcCc-------------------------
Confidence 4578999999999876655 3345567889999999999999999999999987
Q ss_pred ccccccccccccccccCCCeEeC-----CCCCcccceeeecchhhhhccCCccc-cccccccccCceEEecccccCCHHH
Q 006254 167 EKAEYDTAGNLKTQIARSPFVQI-----PLGVTEDRLIGSVDVEESVKTGTTVF-QPGLLAEAHRGVLYIDEINLLDEGI 240 (653)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~fv~l-----~~~~~~~~l~G~~d~~~~~~~g~~~~-~~Gll~~A~~giL~IDEi~~l~~~~ 240 (653)
+++.|||.+ |.++.|++|||+ +++.|+|+..- ++|+|+.||+|+||||||+.||.++
T Consensus 294 --------------R~~~PFIaiNCaAiPe~LlESELFGy---e~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~L 356 (560)
T COG3829 294 --------------RANGPFIAINCAAIPETLLESELFGY---EKGAFTGASKGGKPGLFELANGGTLFLDEIGEMPLPL 356 (560)
T ss_pred --------------ccCCCeEEEecccCCHHHHHHHHhCc---CCccccccccCCCCcceeeccCCeEEehhhccCCHHH
Confidence 357899885 555677899998 48999999876 9999999999999999999999999
Q ss_pred HHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecC------CCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHH
Q 006254 241 SNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP------EEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQF 314 (653)
Q Consensus 241 ~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp------~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~ 314 (653)
|..||++++++. |+|.|.+...|.++++|||||. .+|.||++|++|+++. .+..||.+++.+||..++.+|
T Consensus 357 QaKLLRVLQEke--i~rvG~t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYYRLNV~-~i~iPPLReR~eDI~~L~~~F 433 (560)
T COG3829 357 QAKLLRVLQEKE--IERVGGTKPIPVDVRIIAATNRNLEKMIAEGTFREDLYYRLNVI-PITIPPLRERKEDIPLLAEYF 433 (560)
T ss_pred HHHHHHHHhhce--EEecCCCCceeeEEEEEeccCcCHHHHHhcCcchhhheeeecee-eecCCCcccCcchHHHHHHHH
Confidence 999999999999 8999999999999999999997 4689999999999998 888899999999999999998
Q ss_pred HhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccC-CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHH
Q 006254 315 QERSNEVFKMVEEETDLAKTQIILAREYLKDVA-IGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVD 393 (653)
Q Consensus 315 ~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~-is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~e 393 (653)
..... +....++. ++++++..|..|.|++|+ |...++++-+-- .......|+.+
T Consensus 434 l~k~s--------------------~~~~~~v~~ls~~a~~~L~~y~WPGNV---RELeNviER~v~--~~~~~~~I~~~ 488 (560)
T COG3829 434 LDKFS--------------------RRYGRNVKGLSPDALALLLRYDWPGNV---RELENVIERAVN--LVESDGLIDAD 488 (560)
T ss_pred HHHHH--------------------HHcCCCcccCCHHHHHHHHhCCCCchH---HHHHHHHHHHHh--ccCCcceeehh
Confidence 66432 34455566 999999999999999987 777777654432 23344456666
Q ss_pred HH
Q 006254 394 DL 395 (653)
Q Consensus 394 Dv 395 (653)
|+
T Consensus 489 ~l 490 (560)
T COG3829 489 DL 490 (560)
T ss_pred hc
Confidence 65
No 13
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.97 E-value=5.3e-30 Score=273.78 Aligned_cols=234 Identities=26% Similarity=0.359 Sum_probs=204.6
Q ss_pred CCCCCceechHHHHHHH--HHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccccccc
Q 006254 91 FFPLAAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (653)
Q Consensus 91 ~~~f~~IvGq~~~k~aL--~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~ 168 (653)
...+..|||++.+++.+ .+..|+++...|||.|++||||..+||+||+++++
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S~R-------------------------- 272 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLSPR-------------------------- 272 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHHhcCCCeEEEecCCCccHHHHHHHHHhhCcc--------------------------
Confidence 45678999999998888 57788889999999999999999999999999983
Q ss_pred ccccccccccccccCCCeEe-----CCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHH
Q 006254 169 AEYDTAGNLKTQIARSPFVQ-----IPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNL 243 (653)
Q Consensus 169 ~~~~~~~~~~~~~~~~~fv~-----l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~ 243 (653)
++.|||. +|.++.|++|||+. |+.|+|+...++|.|+.|+||+||+|||..||.++|.+
T Consensus 273 -------------~~kPfV~~NCAAlPesLlESELFGHe---KGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~lQaK 336 (550)
T COG3604 273 -------------RDKPFVKLNCAALPESLLESELFGHE---KGAFTGAINTRRGRFELADGGTLFLDEIGELPLALQAK 336 (550)
T ss_pred -------------cCCCceeeeccccchHHHHHHHhccc---ccccccchhccCcceeecCCCeEechhhccCCHHHHHH
Confidence 4667776 56777888999985 99999999999999999999999999999999999999
Q ss_pred HHHHHHcCceEEeeCCeeEEeecCcEEEEEecCC------CCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhh
Q 006254 244 LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQER 317 (653)
Q Consensus 244 Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~------eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~ 317 (653)
||.++++|. ++|.|+...++.+++|||+||.+ +|+|+.+|++|+.++ .+..||.+++..||..++.+|.+.
T Consensus 337 LLRvLQegE--ieRvG~~r~ikVDVRiIAATNRDL~~~V~~G~FRaDLYyRLsV~-Pl~lPPLRER~~DIplLA~~Fle~ 413 (550)
T COG3604 337 LLRVLQEGE--IERVGGDRTIKVDVRVIAATNRDLEEMVRDGEFRADLYYRLSVF-PLELPPLRERPEDIPLLAGYFLEK 413 (550)
T ss_pred HHHHHhhcc--eeecCCCceeEEEEEEEeccchhHHHHHHcCcchhhhhhccccc-ccCCCCcccCCccHHHHHHHHHHH
Confidence 999999999 99999999999999999999973 689999999999998 888899999999999999998653
Q ss_pred hhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHH
Q 006254 318 SNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDL 395 (653)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv 395 (653)
... +.....+.++.++++.|.+|.|++|+ |...++++.|..+| | ..++.+|+
T Consensus 414 ~~~-------------------~~gr~~l~ls~~Al~~L~~y~wPGNV---RELen~veRavlla---~-~~~~~~d~ 465 (550)
T COG3604 414 FRR-------------------RLGRAILSLSAEALELLSSYEWPGNV---RELENVVERAVLLA---G-RLTRRGDL 465 (550)
T ss_pred HHH-------------------hcCCcccccCHHHHHHHHcCCCCCcH---HHHHHHHHHHHHHh---c-ccCCCcce
Confidence 321 22333588999999999999999987 89999998887777 2 24555664
No 14
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.96 E-value=5.2e-29 Score=277.10 Aligned_cols=265 Identities=26% Similarity=0.370 Sum_probs=204.7
Q ss_pred CCCCCceechHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccccccccc
Q 006254 91 FFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAE 170 (653)
Q Consensus 91 ~~~f~~IvGq~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~ 170 (653)
.++|++|+||+.+++++.+++. +..+++|.||||||||++++.++.++++... +..++... -
T Consensus 188 ~~d~~dv~Gq~~~~~al~~aa~--~g~~vlliG~pGsGKTtlar~l~~llp~~~~-------------~~~le~~~---i 249 (499)
T TIGR00368 188 DLDLKDIKGQQHAKRALEIAAA--GGHNLLLFGPPGSGKTMLASRLQGILPPLTN-------------EEAIETAR---I 249 (499)
T ss_pred CCCHHHhcCcHHHHhhhhhhcc--CCCEEEEEecCCCCHHHHHHHHhcccCCCCC-------------cEEEeccc---c
Confidence 4589999999999999988775 5578999999999999999999999985421 11111000 0
Q ss_pred cccccccc--ccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHHHHH
Q 006254 171 YDTAGNLK--TQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVL 248 (653)
Q Consensus 171 ~~~~~~~~--~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~l 248 (653)
++..+... ......||+.++++.+...++| |....+||.+..||+||||||||+.+++.+++.|+++|
T Consensus 250 ~s~~g~~~~~~~~~~~Pf~~p~~s~s~~~~~g----------gg~~~~pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~L 319 (499)
T TIGR00368 250 WSLVGKLIDRKQIKQRPFRSPHHSASKPALVG----------GGPIPLPGEISLAHNGVLFLDELPEFKRSVLDALREPI 319 (499)
T ss_pred ccchhhhccccccccCCccccccccchhhhhC----------CccccchhhhhccCCCeEecCChhhCCHHHHHHHHHHH
Confidence 11111100 0124689999999999988888 55567899999999999999999999999999999999
Q ss_pred HcCceEEeeCCeeEEeecCcEEEEEecCCC----C------------------cccHHHHhhhcccccccCCCCHhhHHH
Q 006254 249 TEGVNIVEREGISFKHPCKPLLIATYNPEE----G------------------VVREHLLDRIAINLSADLPMTFEDRVA 306 (653)
Q Consensus 249 ~~g~~~v~r~G~s~~~p~~~~lIattNp~e----g------------------~l~~aLldRf~~~v~l~~p~~~~~r~~ 306 (653)
+++.+.+.|.|.+..+|++|.+|++|||++ + .++.+|+|||++++.+.. .+.++
T Consensus 320 E~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~-~~~~~--- 395 (499)
T TIGR00368 320 EDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPL-LPPEK--- 395 (499)
T ss_pred HcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcC-CCHHH---
Confidence 999999999999999999999999999964 1 488999999999999973 33321
Q ss_pred HHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhh-----c-----------------ccCCCHHHHHHHHHHHHhcC
Q 006254 307 AVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYL-----K-----------------DVAIGREQLKYLVMEALRGG 364 (653)
Q Consensus 307 I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l-----~-----------------~v~is~~~l~~l~~~~~~~~ 364 (653)
+.. . .-.+....+++++..||+.. . ...++++..+.+.+.+..++
T Consensus 396 l~~-------~------~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~ 462 (499)
T TIGR00368 396 LLS-------T------GSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALNKLG 462 (499)
T ss_pred Hhc-------c------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHHhcC
Confidence 110 0 01123445566666555443 1 13457777777777777777
Q ss_pred CCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHHHH
Q 006254 365 CQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVEL 401 (653)
Q Consensus 365 i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~l 401 (653)
. |.|+...++|+|+++|+|+|++.|+.+||.+|+.|
T Consensus 463 l-S~R~~~rilrvArTiAdL~g~~~i~~~hv~eA~~~ 498 (499)
T TIGR00368 463 L-SSRATHRILKVARTIADLKEEKNISREHLAEAIEY 498 (499)
T ss_pred C-CchHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhc
Confidence 5 99999999999999999999999999999999976
No 15
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.96 E-value=2e-29 Score=273.78 Aligned_cols=314 Identities=23% Similarity=0.267 Sum_probs=247.8
Q ss_pred cccccchhhhhhhhccc--cccccccccCCCcCCCCCCCcCccccCCCCccchhhhc----ccchhhhcccccccc--cc
Q 006254 9 TTVSSAASTSLSHLQQS--CSVVSSLKLHPLLFSYSPPPFFKFRTRPKHHRFFHVRA----SSSNATLDSANGAVA--AA 80 (653)
Q Consensus 9 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~--~~ 80 (653)
+.......+++..+..+ ..++.|++++. ..++ .+.++++......+.+.+ ....++.+++.|+.+ .|
T Consensus 31 v~~a~~~~~al~~i~~~~~~lvl~Di~mp~-~~Gl----~ll~~i~~~~~~~pVI~~Tg~g~i~~AV~A~k~GA~Dfl~K 105 (464)
T COG2204 31 VVTAESAEEALEALSESPFDLVLLDIRMPG-MDGL----ELLKEIKSRDPDLPVIVMTGHGDIDTAVEALRLGAFDFLEK 105 (464)
T ss_pred EEEeCCHHHHHHHHhcCCCCEEEEecCCCC-CchH----HHHHHHHhhCCCCCEEEEeCCCCHHHHHHHHhcCcceeeeC
Confidence 33444556667766654 37889999885 6666 466666655556666555 445678888888664 22
Q ss_pred C--ccc--------c-----c------cCCCCCCCCceechHHHHHHH--HHhcccCCCceEEEECCCCCHHHHHHHHHH
Q 006254 81 S--EDQ--------D-----S------YGRQFFPLAAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLH 137 (653)
Q Consensus 81 ~--~~~--------~-----~------~~~~~~~f~~IvGq~~~k~aL--~~~av~p~~~gVLL~GppGTGKT~lArala 137 (653)
. .+. . . .......+..+||++..++.+ ++..+++...+|||.|++||||.++||+||
T Consensus 106 P~~~~~L~~~v~ral~~~~~~~e~~~~~~~~~~~~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH 185 (464)
T COG2204 106 PFDLDRLLAIVERALELRELQRENRRSLKRAKSLGGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIH 185 (464)
T ss_pred CCCHHHHHHHHHHHHHHhhhhhhhhhhhhccccccCCceecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHH
Confidence 1 100 0 0 011124678999999999999 667788899999999999999999999999
Q ss_pred hhCCCCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeEeC-----CCCCcccceeeecchhhhhccCC
Q 006254 138 AILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQI-----PLGVTEDRLIGSVDVEESVKTGT 212 (653)
Q Consensus 138 ~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l-----~~~~~~~~l~G~~d~~~~~~~g~ 212 (653)
..++ +.+.|||.+ |.+..+++|||+ +++.|+|.
T Consensus 186 ~~S~---------------------------------------R~~~PFVavNcaAip~~l~ESELFGh---ekGAFTGA 223 (464)
T COG2204 186 QASP---------------------------------------RAKGPFIAVNCAAIPENLLESELFGH---EKGAFTGA 223 (464)
T ss_pred hhCc---------------------------------------ccCCCceeeecccCCHHHHHHHhhcc---cccCcCCc
Confidence 9987 346788885 555667789998 59999999
Q ss_pred ccccccccccccCceEEecccccCCHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCC------CCcccHHHH
Q 006254 213 TVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLL 286 (653)
Q Consensus 213 ~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~------eg~l~~aLl 286 (653)
..-+.|.|..|+||+||||||..||.++|..||.+++++. ++|.|.....+.+++||++||.+ .|.|+++|+
T Consensus 224 ~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~--~~rvG~~~~i~vdvRiIaaT~~dL~~~v~~G~FReDLy 301 (464)
T COG2204 224 ITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQERE--FERVGGNKPIKVDVRIIAATNRDLEEEVAAGRFREDLY 301 (464)
T ss_pred ccccCcceeEcCCceEEeeccccCCHHHHHHHHHHHHcCe--eEecCCCcccceeeEEEeecCcCHHHHHHcCCcHHHHH
Confidence 9999999999999999999999999999999999999998 89999999999999999999973 589999999
Q ss_pred hhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCC
Q 006254 287 DRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQ 366 (653)
Q Consensus 287 dRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~ 366 (653)
+|++++ .+..|+.+++++||..++.+|.+..+. +...+...+++++++.|..|.|++|+
T Consensus 302 yRLnV~-~i~iPpLRER~EDIp~L~~hfl~~~~~-------------------~~~~~~~~~s~~a~~~L~~y~WPGNV- 360 (464)
T COG2204 302 YRLNVV-PLRLPPLRERKEDIPLLAEHFLKRFAA-------------------ELGRPPKGFSPEALAALLAYDWPGNV- 360 (464)
T ss_pred hhhccc-eecCCcccccchhHHHHHHHHHHHHHH-------------------HcCCCCCCCCHHHHHHHHhCCCChHH-
Confidence 999998 899999999999999999999764332 22245578999999999999999988
Q ss_pred CcchHHHHHHHHHHHHHHcCCCCccHHHHHH
Q 006254 367 GHRAELYAARVAKCLAALEGREKVNVDDLKK 397 (653)
Q Consensus 367 s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~ 397 (653)
|.+.++++ ..+.+.....|+.+|+..
T Consensus 361 --REL~N~ve---r~~il~~~~~i~~~~l~~ 386 (464)
T COG2204 361 --RELENVVE---RAVILSEGPEIEVEDLPL 386 (464)
T ss_pred --HHHHHHHH---HHHhcCCccccchhhccc
Confidence 66666553 344555666788888653
No 16
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.96 E-value=2.8e-28 Score=274.26 Aligned_cols=263 Identities=19% Similarity=0.201 Sum_probs=206.0
Q ss_pred CceechHHHHHHHHHhcccCC------------CceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccc
Q 006254 95 AAVVGQDAIKTALLLGAIDRE------------IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWE 162 (653)
Q Consensus 95 ~~IvGq~~~k~aL~~~av~p~------------~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~ 162 (653)
..|.|++.+|++|+++++... .-+|||.|+||||||++||++++.+++.
T Consensus 203 p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~------------------- 263 (509)
T smart00350 203 PSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRA------------------- 263 (509)
T ss_pred ccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcc-------------------
Confidence 478999999999988887421 1179999999999999999999998731
Q ss_pred ccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHH
Q 006254 163 DGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISN 242 (653)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~ 242 (653)
.|+... ..+...+.+.. .+...+|...+++|.+..|++|+|||||++++++..+.
T Consensus 264 ----------------------~~~~~~-~~~~~~l~~~~--~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~~~~q~ 318 (509)
T smart00350 264 ----------------------VYTTGK-GSSAVGLTAAV--TRDPETREFTLEGGALVLADNGVCCIDEFDKMDDSDRT 318 (509)
T ss_pred ----------------------eEcCCC-CCCcCCccccc--eEccCcceEEecCccEEecCCCEEEEechhhCCHHHHH
Confidence 111100 00001111110 01113466778899999999999999999999999999
Q ss_pred HHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCC------------cccHHHHhhhcccccccCCCCHhhHHHHHHH
Q 006254 243 LLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG------------VVREHLLDRIAINLSADLPMTFEDRVAAVGI 310 (653)
Q Consensus 243 ~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg------------~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~ 310 (653)
.|+.+|+++.+++.+.|.....|++|.||||+||.+| .|+++|+|||++++.+..+++.+...+|.+.
T Consensus 319 ~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~ 398 (509)
T smart00350 319 AIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKH 398 (509)
T ss_pred HHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHH
Confidence 9999999999999999999999999999999999887 6899999999998777667788888889887
Q ss_pred HHHHHhh--hhHHh-hhhhhhhhHHHHHHHHHHh-hhcccCCCHHHHHHHHHHHHhcCC------------CCcchHHHH
Q 006254 311 ATQFQER--SNEVF-KMVEEETDLAKTQIILARE-YLKDVAIGREQLKYLVMEALRGGC------------QGHRAELYA 374 (653)
Q Consensus 311 ~~~~~~~--~~~~~-~~~~~~~~~l~~~i~~ar~-~l~~v~is~~~l~~l~~~~~~~~i------------~s~R~~i~l 374 (653)
+..+... +.... .......+.++..|..||. ..+ .+++++.++|.+++..... .+.|..+.+
T Consensus 399 i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P--~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sl 476 (509)
T smart00350 399 VVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKP--KLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESI 476 (509)
T ss_pred HHHhhcccCccccccccccCCHHHHHHHHHHHHhcCCC--CCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHH
Confidence 6544321 10010 0123445788999999998 555 4899999999998766432 378999999
Q ss_pred HHHHHHHHHHcCCCCccHHHHHHHHHHHc
Q 006254 375 ARVAKCLAALEGREKVNVDDLKKAVELVI 403 (653)
Q Consensus 375 lr~Ara~Aal~gr~~Vt~eDv~~A~~lvl 403 (653)
+|+|+|+|++.++++|+++||.+|++++.
T Consensus 477 iRla~A~A~l~~r~~V~~~Dv~~ai~l~~ 505 (509)
T smart00350 477 IRLSEAHAKMRLSDVVEEADVEEAIRLLR 505 (509)
T ss_pred HHHHHHHHHHcCCCccCHHHHHHHHHHHH
Confidence 99999999999999999999999999874
No 17
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.96 E-value=3e-28 Score=265.25 Aligned_cols=260 Identities=18% Similarity=0.210 Sum_probs=201.2
Q ss_pred CceechHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccccccccccccc
Q 006254 95 AAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTA 174 (653)
Q Consensus 95 ~~IvGq~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~~~~ 174 (653)
..|+|++++++.++.++. ..++|||.||||||||++|++|+..+..
T Consensus 20 ~~i~gre~vI~lll~aal--ag~hVLL~GpPGTGKT~LAraLa~~~~~-------------------------------- 65 (498)
T PRK13531 20 KGLYERSHAIRLCLLAAL--SGESVFLLGPPGIAKSLIARRLKFAFQN-------------------------------- 65 (498)
T ss_pred hhccCcHHHHHHHHHHHc--cCCCEEEECCCChhHHHHHHHHHHHhcc--------------------------------
Confidence 368999999999988877 6799999999999999999999998741
Q ss_pred ccccccccCCCeEeCCCC-CcccceeeecchhhhhccCCc-cccccccccccCceEEecccccCCHHHHHHHHHHHHcCc
Q 006254 175 GNLKTQIARSPFVQIPLG-VTEDRLIGSVDVEESVKTGTT-VFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGV 252 (653)
Q Consensus 175 ~~~~~~~~~~~fv~l~~~-~~~~~l~G~~d~~~~~~~g~~-~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~l~~g~ 252 (653)
..+|..+... .+..++||.+++...-..|.. .+.+|.+..++ +||+|||+++++.+|+.||.+|+++.
T Consensus 66 --------~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~--lLfLDEI~rasp~~QsaLLeam~Er~ 135 (498)
T PRK13531 66 --------ARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAE--IVFLDEIWKAGPAILNTLLTAINERR 135 (498)
T ss_pred --------cCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCcccccc--EEeecccccCCHHHHHHHHHHHHhCe
Confidence 1134333322 245689998766665556766 47789887776 99999999999999999999999998
Q ss_pred eEEeeCCeeEEeecCcEEEEEecC--CCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhh
Q 006254 253 NIVEREGISFKHPCKPLLIATYNP--EEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETD 330 (653)
Q Consensus 253 ~~v~r~G~s~~~p~~~~lIattNp--~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~ 330 (653)
+ ..+|.....|.+|++++| |+ +++.++++|+|||.+.+.+++|.+.++..+|+.....-...+ ......
T Consensus 136 ~--t~g~~~~~lp~rfiv~AT-N~LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~~~~~~~~------~~~~~v 206 (498)
T PRK13531 136 F--RNGAHEEKIPMRLLVTAS-NELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNP------VPASLQ 206 (498)
T ss_pred E--ecCCeEEeCCCcEEEEEC-CCCcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcccccccCC------CcccCC
Confidence 4 457888899998888777 75 347899999999988888875544566567765421100000 000011
Q ss_pred HHHHHHHHHHhhhcccCCCHHHHHHHHHHHHh----c--CCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHcC
Q 006254 331 LAKTQIILAREYLKDVAIGREQLKYLVMEALR----G--GCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVIL 404 (653)
Q Consensus 331 ~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~----~--~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~ 404 (653)
.-.+.+...++....|.+++.++++|+.+... . ...|.|+.+.++++++|.|.++||++|+++||. .+..||+
T Consensus 207 is~eel~~lq~~v~~V~v~d~v~eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~vL~ 285 (498)
T PRK13531 207 ITDEEYQQWQKEIGKITLPDHVFELIFQLRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI-LLKDCLW 285 (498)
T ss_pred CCHHHHHHHHHHhcceeCCHHHHHHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HhHHHhc
Confidence 22345667777788999999999999999753 1 226999999999999999999999999999999 9999999
Q ss_pred CCcc
Q 006254 405 PRSI 408 (653)
Q Consensus 405 hR~~ 408 (653)
||..
T Consensus 286 HRl~ 289 (498)
T PRK13531 286 HDAQ 289 (498)
T ss_pred cCHH
Confidence 9963
No 18
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.92 E-value=1.1e-23 Score=225.13 Aligned_cols=266 Identities=28% Similarity=0.355 Sum_probs=206.4
Q ss_pred CCCceechHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccccccccccc
Q 006254 93 PLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYD 172 (653)
Q Consensus 93 ~f~~IvGq~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~~ 172 (653)
....++|++.++..++.+.. ..++|||.|+||||||++|+.++..+.
T Consensus 22 ~~~~~~g~~~~~~~~l~a~~--~~~~vll~G~PG~gKT~la~~lA~~l~------------------------------- 68 (329)
T COG0714 22 LEKVVVGDEEVIELALLALL--AGGHVLLEGPPGVGKTLLARALARALG------------------------------- 68 (329)
T ss_pred cCCeeeccHHHHHHHHHHHH--cCCCEEEECCCCccHHHHHHHHHHHhC-------------------------------
Confidence 34458999999999988777 679999999999999999999999884
Q ss_pred ccccccccccCCCeEe--CCCCCcccceeeecchhhhhc-cCCccccccccccccCceEEecccccCCHHHHHHHHHHHH
Q 006254 173 TAGNLKTQIARSPFVQ--IPLGVTEDRLIGSVDVEESVK-TGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLT 249 (653)
Q Consensus 173 ~~~~~~~~~~~~~fv~--l~~~~~~~~l~G~~d~~~~~~-~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~l~ 249 (653)
.+|+. +...+..+.++|..++..... .+...+.+|.+..+.++|||+||||+.++.+++.||.+|+
T Consensus 69 -----------~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~ 137 (329)
T COG0714 69 -----------LPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALE 137 (329)
T ss_pred -----------CCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccccCCHHHHHHHHHHHh
Confidence 34444 466688889999987665543 6777889999998877899999999999999999999999
Q ss_pred cCceEEeeCCeeEEeecCcEEEEEecCCC----CcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhh-hhHHhhh
Q 006254 250 EGVNIVEREGISFKHPCKPLLIATYNPEE----GVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQER-SNEVFKM 324 (653)
Q Consensus 250 ~g~~~v~r~G~s~~~p~~~~lIattNp~e----g~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~-~~~~~~~ 324 (653)
++.+++...+. +..|..|++|+|+||.+ ..+.++++|||.+.+.+++|...++...++......... .....+
T Consensus 138 e~~vtv~~~~~-~~~~~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~~~~~~~~~~~~~~v~- 215 (329)
T COG0714 138 ERQVTVPGLTT-IRLPPPFIVIATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIILARVGGVDELDLESLVK- 215 (329)
T ss_pred CcEEEECCcCC-cCCCCCCEEEEccCccccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHHHHhCccccccccchhhh-
Confidence 99977653332 77888999999999844 358999999999998999875655555555433221110 011111
Q ss_pred hhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCC-------CcchHHHHHHHHHHHHHHcCCCCccHHHHHH
Q 006254 325 VEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQ-------GHRAELYAARVAKCLAALEGREKVNVDDLKK 397 (653)
Q Consensus 325 ~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~-------s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~ 397 (653)
...-...+...+.....+.+++++..++..+....... +.|+...++.+++++|.+.|+..+..+|+..
T Consensus 216 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~r~~~~~~~~~~~~a~~~~~~~~~~~dv~~ 291 (329)
T COG0714 216 ----PVLSDEELLRLQKEVKKVPVSDEVIDYIVTLVAALREAPDVALGASPRASLALLAALRALALLDGRDAVIPDDVKA 291 (329)
T ss_pred ----hhhCHHHHHHHHhhhccCCchHHHHHHHHHHHHhhccccchhccCCchhHHHHHHHHHhhhhhcCccccCHHHHHH
Confidence 11112233444444557899999999988876554332 7999999999999999999999999999999
Q ss_pred HHHHHcCCCcc
Q 006254 398 AVELVILPRSI 408 (653)
Q Consensus 398 A~~lvl~hR~~ 408 (653)
.+..++.||..
T Consensus 292 ~~~~~~~~~~~ 302 (329)
T COG0714 292 LAEPALAHRLI 302 (329)
T ss_pred Hhhhhhhhhhh
Confidence 99999999975
No 19
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.91 E-value=6.3e-24 Score=226.40 Aligned_cols=227 Identities=25% Similarity=0.325 Sum_probs=178.1
Q ss_pred eechHHHHHHH--HHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccccccccccccc
Q 006254 97 VVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTA 174 (653)
Q Consensus 97 IvGq~~~k~aL--~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~~~~ 174 (653)
|+|++..++.+ .+..+.....+|||+|++||||+++|++||...++
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r-------------------------------- 48 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKR-------------------------------- 48 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCc--------------------------------
Confidence 57888777766 34455567899999999999999999999998752
Q ss_pred ccccccccCCCeEeCCCCCc-----ccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHHHHHH
Q 006254 175 GNLKTQIARSPFVQIPLGVT-----EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLT 249 (653)
Q Consensus 175 ~~~~~~~~~~~fv~l~~~~~-----~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~l~ 249 (653)
...||+.+++... +..+||+ +++.++|....++|++..|++|+||||||+.|+..+|..|+.+++
T Consensus 49 -------~~~pfv~vnc~~~~~~~l~~~lfG~---~~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~ 118 (329)
T TIGR02974 49 -------WQGPLVKLNCAALSENLLDSELFGH---EAGAFTGAQKRHQGRFERADGGTLFLDELATASLLVQEKLLRVIE 118 (329)
T ss_pred -------cCCCeEEEeCCCCChHHHHHHHhcc---ccccccCcccccCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHH
Confidence 3578888776644 4467775 367788887788999999999999999999999999999999999
Q ss_pred cCceEEeeCCeeEEeecCcEEEEEecCC------CCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhh
Q 006254 250 EGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFK 323 (653)
Q Consensus 250 ~g~~~v~r~G~s~~~p~~~~lIattNp~------eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~ 323 (653)
++. +.+.|.....+.++++|++||.+ .|.++++|++||... .|..|+.+++..||..++.+|....
T Consensus 119 ~~~--~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~rl~~~-~i~lPpLReR~eDI~~L~~~fl~~~----- 190 (329)
T TIGR02974 119 YGE--FERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLDRLAFD-VITLPPLRERQEDIMLLAEHFAIRM----- 190 (329)
T ss_pred cCc--EEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHHHhcch-hcCCCchhhhhhhHHHHHHHHHHHH-----
Confidence 998 77889888889999999999974 478999999999765 5666889999999999888875421
Q ss_pred hhhhhhhHHHHHHHHHHhh-hcc-cCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHH
Q 006254 324 MVEEETDLAKTQIILAREY-LKD-VAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDD 394 (653)
Q Consensus 324 ~~~~~~~~l~~~i~~ar~~-l~~-v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eD 394 (653)
+++. .+. +.+++++++.|..+.|.+|+ |...++++.+ +.....+.++.+|
T Consensus 191 ---------------~~~~~~~~~~~ls~~a~~~L~~y~WPGNv---rEL~n~i~~~---~~~~~~~~~~~~~ 242 (329)
T TIGR02974 191 ---------------ARELGLPLFPGFTPQAREQLLEYHWPGNV---RELKNVVERS---VYRHGLEEAPIDE 242 (329)
T ss_pred ---------------HHHhCCCCCCCcCHHHHHHHHhCCCCchH---HHHHHHHHHH---HHhCCCCccchhh
Confidence 1111 222 57999999999999999987 5555555332 2333334566665
No 20
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.90 E-value=1.6e-22 Score=233.43 Aligned_cols=265 Identities=17% Similarity=0.188 Sum_probs=195.5
Q ss_pred CceechHHHHHHHHHhcccCC---------------------CceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccC
Q 006254 95 AAVVGQDAIKTALLLGAIDRE---------------------IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANA 153 (653)
Q Consensus 95 ~~IvGq~~~k~aL~~~av~p~---------------------~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc 153 (653)
..|.|++.+|+++++.++.-. ..+|||.|+||||||++||++|+..|+...
T Consensus 450 P~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~y-------- 521 (915)
T PTZ00111 450 PSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIY-------- 521 (915)
T ss_pred CeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCcccc--------
Confidence 479999999999988776431 127999999999999999999998873110
Q ss_pred CCCCCCcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEeccc
Q 006254 154 DPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEI 233 (653)
Q Consensus 154 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi 233 (653)
+ ...++..+.+..... .....+|.+..++|.+..|++|+|||||+
T Consensus 522 ------------------t---------sG~~~s~vgLTa~~~--------~~d~~tG~~~le~GaLvlAdgGtL~IDEi 566 (915)
T PTZ00111 522 ------------------T---------SGKSSSSVGLTASIK--------FNESDNGRAMIQPGAVVLANGGVCCIDEL 566 (915)
T ss_pred ------------------C---------CCCCCccccccchhh--------hcccccCcccccCCcEEEcCCCeEEecch
Confidence 0 123444333322110 01112477788999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCC------------cccHHHHhhhcccccccCCCCH
Q 006254 234 NLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG------------VVREHLLDRIAINLSADLPMTF 301 (653)
Q Consensus 234 ~~l~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg------------~l~~aLldRf~~~v~l~~p~~~ 301 (653)
+.|++..|..|+.+|+++.+.|.+.|+....++++.||||+||..| .|+++|++||+++..+...++.
T Consensus 567 dkms~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~ 646 (915)
T PTZ00111 567 DKCHNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQ 646 (915)
T ss_pred hhCCHHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCCh
Confidence 9999999999999999999999999999999999999999999543 4789999999998666555565
Q ss_pred hhHHHHHHHHHHHH--hhh---h---H-------------Hh---hh-hhhhhhHHHHHHHHHHhhhcccCCCHHHHHHH
Q 006254 302 EDRVAAVGIATQFQ--ERS---N---E-------------VF---KM-VEEETDLAKTQIILAREYLKDVAIGREQLKYL 356 (653)
Q Consensus 302 ~~r~~I~~~~~~~~--~~~---~---~-------------~~---~~-~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l 356 (653)
+.=..|...+...- ... . . .. .. .....+.|++.|..||.... -.+++++.+.|
T Consensus 647 ~~D~~lA~hI~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lLrkYI~YAR~~~~-P~Ls~eA~~~i 725 (915)
T PTZ00111 647 DTDQLISLSIAKDFLLPHMTGSGNDEDTYDRSNTMHVEDESLRSEKDYNKNDLDMLRMYIKFSKLHCF-PKLSDEAKKVI 725 (915)
T ss_pred HHHHHHHHHHHHhhcccccccccccccchhccccccccccccccccccCCCCHHHHHHHHHHHhccCC-CCCCHHHHHHH
Confidence 55444544332110 000 0 0 00 00 01235678999999986432 26899998888
Q ss_pred HHHHHhcC---------------------------------CCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHc
Q 006254 357 VMEALRGG---------------------------------CQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVI 403 (653)
Q Consensus 357 ~~~~~~~~---------------------------------i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~lvl 403 (653)
.++..... -.+.|.+..++|+|.|+|.+.-++.|+.+|+++|+.++.
T Consensus 726 ~~~Yv~mR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iT~RqLEsLIRLsEA~AK~rLs~~Vt~~Dv~~Ai~L~~ 805 (915)
T PTZ00111 726 TREYVKMRQGNFQTSNLDELEHAQEDDDDDLYYQSSGTRMIYVSSRMISSIIRISVSLARMRLSTVVTPADALQAVQIVK 805 (915)
T ss_pred HHHHHHHhhhhccccccccccccccccccccccccccCCcccccHHHHHHHHHHHHHHhhhcCcCcccHHHHHHHHHHHH
Confidence 77543311 146899999999999999999999999999999999874
No 21
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.90 E-value=1e-22 Score=229.87 Aligned_cols=250 Identities=24% Similarity=0.235 Sum_probs=185.5
Q ss_pred cccccCCCCCCCCceechHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccc
Q 006254 83 DQDSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWE 162 (653)
Q Consensus 83 ~~~~~~~~~~~f~~IvGq~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~ 162 (653)
++...+.++.+|++|+||+..+++|..++..+...+|||+||||||||++||+++..+..... .++
T Consensus 53 ~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~---s~~----------- 118 (531)
T TIGR02902 53 EPLSEKTRPKSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPA---SPF----------- 118 (531)
T ss_pred chHHHhhCcCCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhhhccC---CCc-----------
Confidence 345556788999999999999999987777778889999999999999999999986531000 000
Q ss_pred ccccccccccccccccccccCCCeEeCCCCC-------cccceeeecch--hh--hh--ccCCccccccccccccCceEE
Q 006254 163 DGLDEKAEYDTAGNLKTQIARSPFVQIPLGV-------TEDRLIGSVDV--EE--SV--KTGTTVFQPGLLAEAHRGVLY 229 (653)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~-------~~~~l~G~~d~--~~--~~--~~g~~~~~~Gll~~A~~giL~ 229 (653)
..+.+|+.+++.. ..+.++|+.+- .. .. ..|....++|.+..|++|+||
T Consensus 119 ------------------~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~ 180 (531)
T TIGR02902 119 ------------------KEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLF 180 (531)
T ss_pred ------------------CCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEE
Confidence 0135677666542 23345554210 00 00 124445678999999999999
Q ss_pred ecccccCCHHHHHHHHHHHHcCceEEee-----CCe----------eEEeecCcEEEEEecCCCCcccHHHHhhhccccc
Q 006254 230 IDEINLLDEGISNLLLNVLTEGVNIVER-----EGI----------SFKHPCKPLLIATYNPEEGVVREHLLDRIAINLS 294 (653)
Q Consensus 230 IDEi~~l~~~~~~~Ll~~l~~g~~~v~r-----~G~----------s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~ 294 (653)
||||+.|++..|+.|+.+|+++.+.++. .+. ....|++|++|++||..+..+.++|++||..+ .
T Consensus 181 IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~~I-~ 259 (531)
T TIGR02902 181 IDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEI-F 259 (531)
T ss_pred EechhhCCHHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhhhee-e
Confidence 9999999999999999999998865431 110 13468899999999888889999999998544 5
Q ss_pred ccCCCCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 006254 295 ADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYA 374 (653)
Q Consensus 295 l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~l 374 (653)
+. |++.++..+|++... ++ ..+.+++++++.|..+++ +.|..+++
T Consensus 260 f~-pL~~eei~~Il~~~a---------------------------~k--~~i~is~~al~~I~~y~~-----n~Rel~nl 304 (531)
T TIGR02902 260 FR-PLLDEEIKEIAKNAA---------------------------EK--IGINLEKHALELIVKYAS-----NGREAVNI 304 (531)
T ss_pred CC-CCCHHHHHHHHHHHH---------------------------HH--cCCCcCHHHHHHHHHhhh-----hHHHHHHH
Confidence 65 556666555554211 11 236899999999999887 35999999
Q ss_pred HHHHHHHHHHcCCCCccHHHHHHHHH
Q 006254 375 ARVAKCLAALEGREKVNVDDLKKAVE 400 (653)
Q Consensus 375 lr~Ara~Aal~gr~~Vt~eDv~~A~~ 400 (653)
++.|..+|..+++..|+.+||.+++.
T Consensus 305 l~~Aa~~A~~~~~~~It~~dI~~vl~ 330 (531)
T TIGR02902 305 VQLAAGIALGEGRKRILAEDIEWVAE 330 (531)
T ss_pred HHHHHHHHhhCCCcEEcHHHHHHHhC
Confidence 99999999989999999999999975
No 22
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.90 E-value=5.9e-23 Score=230.18 Aligned_cols=243 Identities=23% Similarity=0.274 Sum_probs=180.7
Q ss_pred CCCCCceechHHHHHHH--HHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccccccc
Q 006254 91 FFPLAAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (653)
Q Consensus 91 ~~~f~~IvGq~~~k~aL--~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~ 168 (653)
.+.|++|+|++..++.+ .+..+.+...+|||.|++||||+++|++||..++....
T Consensus 215 ~~~f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~----------------------- 271 (538)
T PRK15424 215 RYVLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHD----------------------- 271 (538)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhccccc-----------------------
Confidence 36799999999888777 33345667889999999999999999999997321000
Q ss_pred ccccccccccccccCCCeEeCCCCCc-----ccceeeecchhhhhccCCcc-ccccccccccCceEEecccccCCHHHHH
Q 006254 169 AEYDTAGNLKTQIARSPFVQIPLGVT-----EDRLIGSVDVEESVKTGTTV-FQPGLLAEAHRGVLYIDEINLLDEGISN 242 (653)
Q Consensus 169 ~~~~~~~~~~~~~~~~~fv~l~~~~~-----~~~l~G~~d~~~~~~~g~~~-~~~Gll~~A~~giL~IDEi~~l~~~~~~ 242 (653)
....+.+.||+.+++... ++.|||+. ++.++|... .++|++..|++|+||||||+.|+..+|.
T Consensus 272 --------~~S~r~~~pfv~inCaal~e~lleseLFG~~---~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~ 340 (538)
T PRK15424 272 --------ARQGKKSHPFVAVNCGAIAESLLEAELFGYE---EGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQT 340 (538)
T ss_pred --------ccCccCCCCeEEeecccCChhhHHHHhcCCc---cccccCccccccCCchhccCCCEEEEcChHhCCHHHHH
Confidence 000124678888776654 45788874 567777753 6789999999999999999999999999
Q ss_pred HHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCC------CCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHh
Q 006254 243 LLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQE 316 (653)
Q Consensus 243 ~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~------eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~ 316 (653)
.|+.+++++. +.|.|.....+.++++|++||.+ +|.|+++|++|+... .|..|+.++++.||..++.+|..
T Consensus 341 kLl~~L~e~~--~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~~~-~I~lPPLReR~eDI~~L~~~fl~ 417 (538)
T PRK15424 341 RLLRVLEEKE--VTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSIL-RLQLPPLRERVADILPLAESFLK 417 (538)
T ss_pred HHHhhhhcCe--EEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHHHhcCC-eecCCChhhchhHHHHHHHHHHH
Confidence 9999999998 77889988899999999999963 478999999999887 78889999999999999988865
Q ss_pred hhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHH-------HHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCC
Q 006254 317 RSNEVFKMVEEETDLAKTQIILAREYLKDVAIGRE-------QLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREK 389 (653)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~-------~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~ 389 (653)
.... . .+..++++ +++.|..|.|++|+ |.+.++++.+-.+..-.....
T Consensus 418 ~~~~--------------------~--~~~~~~~~a~~~~~~a~~~L~~y~WPGNv---REL~nvier~~i~~~~~~~~~ 472 (538)
T PRK15424 418 QSLA--------------------A--LSAPFSAALRQGLQQCETLLLHYDWPGNV---RELRNLMERLALFLSVEPTPD 472 (538)
T ss_pred HHHH--------------------H--cCCCCCHHHHHhhHHHHHHHHhCCCCchH---HHHHHHHHHHHHhcCCCCcCc
Confidence 3211 0 11224444 45788899999987 555555544332221111235
Q ss_pred ccHHHH
Q 006254 390 VNVDDL 395 (653)
Q Consensus 390 Vt~eDv 395 (653)
++.+++
T Consensus 473 i~~~~l 478 (538)
T PRK15424 473 LTPQFL 478 (538)
T ss_pred cCHHHh
Confidence 666655
No 23
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.90 E-value=2.3e-23 Score=222.98 Aligned_cols=229 Identities=28% Similarity=0.309 Sum_probs=180.8
Q ss_pred CCCCCceechHHHHHHH--HHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccccccc
Q 006254 91 FFPLAAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (653)
Q Consensus 91 ~~~f~~IvGq~~~k~aL--~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~ 168 (653)
...+.++||.+...+.+ .+.++.|...+|||.|++||||+.+|+.||....+.
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~------------------------- 128 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHALSARR------------------------- 128 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHHhhhcc-------------------------
Confidence 45688999998765555 455678889999999999999999999999765421
Q ss_pred ccccccccccccccCCCeEeCCC-----CCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHH
Q 006254 169 AEYDTAGNLKTQIARSPFVQIPL-----GVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNL 243 (653)
Q Consensus 169 ~~~~~~~~~~~~~~~~~fv~l~~-----~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~ 243 (653)
...|||.+.| +..+.+|||+ +++.++|+...++|+|+.|+||+||+|||++||++.|..
T Consensus 129 -------------~~~PFI~~NCa~~~en~~~~eLFG~---~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~~Q~k 192 (403)
T COG1221 129 -------------AEAPFIAFNCAAYSENLQEAELFGH---EKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPEGQEK 192 (403)
T ss_pred -------------cCCCEEEEEHHHhCcCHHHHHHhcc---ccceeecccCCcCchheecCCCEEehhhhhhCCHhHHHH
Confidence 2567777544 4445579997 489999999999999999999999999999999999999
Q ss_pred HHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCC-cccH--HHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhH
Q 006254 244 LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG-VVRE--HLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNE 320 (653)
Q Consensus 244 Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg-~l~~--aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~ 320 (653)
|+.+|++|. ++|.|.+..++.+|++|++||.+.. .+.. .|++|.... .|..|+.++++.||+.++.+|....
T Consensus 193 Ll~~le~g~--~~rvG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~rl~~~-~I~LPpLrER~~Di~~L~e~Fl~~~-- 267 (403)
T COG1221 193 LLRVLEEGE--YRRVGGSQPRPVDVRLICATTEDLEEAVLAGADLTRRLNIL-TITLPPLRERKEDILLLAEHFLKSE-- 267 (403)
T ss_pred HHHHHHcCc--eEecCCCCCcCCCceeeeccccCHHHHHHhhcchhhhhcCc-eecCCChhhchhhHHHHHHHHHHHH--
Confidence 999999999 8999999999999999999995443 3444 888854443 4455789999999999999996532
Q ss_pred HhhhhhhhhhHHHHHHHHHHhhhccc-CCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcC
Q 006254 321 VFKMVEEETDLAKTQIILAREYLKDV-AIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEG 386 (653)
Q Consensus 321 ~~~~~~~~~~~l~~~i~~ar~~l~~v-~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~g 386 (653)
+++....+ ..+++++..|..|.|.+|+ |...++++.+-+.+...+
T Consensus 268 ------------------~~~l~~~~~~~~~~a~~~L~~y~~pGNi---rELkN~Ve~~~~~~~~~~ 313 (403)
T COG1221 268 ------------------ARRLGLPLSVDSPEALRALLAYDWPGNI---RELKNLVERAVAQASGEG 313 (403)
T ss_pred ------------------HHHcCCCCCCCCHHHHHHHHhCCCCCcH---HHHHHHHHHHHHHhcccc
Confidence 23332233 3446899999999999988 677777776666665443
No 24
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.90 E-value=8.2e-23 Score=229.21 Aligned_cols=237 Identities=24% Similarity=0.284 Sum_probs=185.9
Q ss_pred CCCCCceechHHHHHHH--HHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccccccc
Q 006254 91 FFPLAAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (653)
Q Consensus 91 ~~~f~~IvGq~~~k~aL--~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~ 168 (653)
.+.|++|+|++..++.+ .+..+.+...+|||.|++||||+++|++||...+
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~--------------------------- 260 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSG--------------------------- 260 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhcC---------------------------
Confidence 47899999999888777 3334566788999999999999999999999875
Q ss_pred ccccccccccccccCCCeEeCCCCCc-----ccceeeecchhhhhccCCcc-ccccccccccCceEEecccccCCHHHHH
Q 006254 169 AEYDTAGNLKTQIARSPFVQIPLGVT-----EDRLIGSVDVEESVKTGTTV-FQPGLLAEAHRGVLYIDEINLLDEGISN 242 (653)
Q Consensus 169 ~~~~~~~~~~~~~~~~~fv~l~~~~~-----~~~l~G~~d~~~~~~~g~~~-~~~Gll~~A~~giL~IDEi~~l~~~~~~ 242 (653)
+.+.||+.+.+... ++.|||+. ++.++|... ..+|++..|++|+||||||+.|+..+|.
T Consensus 261 ------------r~~~pfv~inC~~l~e~lleseLFG~~---~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~ 325 (526)
T TIGR02329 261 ------------RRDFPFVAINCGAIAESLLEAELFGYE---EGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQT 325 (526)
T ss_pred ------------cCCCCEEEeccccCChhHHHHHhcCCc---ccccccccccccccchhhcCCceEEecChHhCCHHHHH
Confidence 23678888777655 45788864 577777753 5789999999999999999999999999
Q ss_pred HHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCC------CCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHh
Q 006254 243 LLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQE 316 (653)
Q Consensus 243 ~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~------eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~ 316 (653)
.|+.+++++. +.|.|.....+.++++|++||.+ ++.|+++|++||... .|..|+.++++.||..++.+|..
T Consensus 326 ~Ll~~L~~~~--~~r~g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~~-~I~lPPLReR~eDI~~L~~~fl~ 402 (526)
T TIGR02329 326 RLLRVLEERE--VVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSIL-RIALPPLRERPGDILPLAAEYLV 402 (526)
T ss_pred HHHHHHhcCc--EEecCCCceeeecceEEeccCCCHHHHhhhcchhHHHHHhcCCc-EEeCCCchhchhHHHHHHHHHHH
Confidence 9999999998 67888888889999999999963 478999999999876 67778999999999999888855
Q ss_pred hhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHH-------HHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCC
Q 006254 317 RSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKY-------LVMEALRGGCQGHRAELYAARVAKCLAALEGREK 389 (653)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~-------l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~ 389 (653)
.... . ..+.+++++++. |..|.|++|+ |...++++.+-.++.-.....
T Consensus 403 ~~~~--------------------~--~~~~~~~~a~~~~~~~~~~L~~y~WPGNv---rEL~nvier~~i~~~~~~~~~ 457 (526)
T TIGR02329 403 QAAA--------------------A--LRLPDSEAAAQVLAGVADPLQRYPWPGNV---RELRNLVERLALELSAMPAGA 457 (526)
T ss_pred HHHH--------------------H--cCCCCCHHHHHHhHHHHHHHHhCCCCchH---HHHHHHHHHHHHhcccCCCCc
Confidence 3210 1 134588888877 9999999987 555555544333222112357
Q ss_pred ccHHHHHH
Q 006254 390 VNVDDLKK 397 (653)
Q Consensus 390 Vt~eDv~~ 397 (653)
|+.+|+..
T Consensus 458 I~~~~l~~ 465 (526)
T TIGR02329 458 LTPDVLRA 465 (526)
T ss_pred cCHHHhhh
Confidence 88888754
No 25
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.89 E-value=1.9e-22 Score=215.09 Aligned_cols=231 Identities=23% Similarity=0.302 Sum_probs=178.5
Q ss_pred CCceechHHHHHHH--HHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccccc
Q 006254 94 LAAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEY 171 (653)
Q Consensus 94 f~~IvGq~~~k~aL--~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~ 171 (653)
|+.++|.+..++.+ .+..+.+...+|||.|++||||+++|++||...++
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r----------------------------- 55 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSR----------------------------- 55 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCc-----------------------------
Confidence 56799999877777 44455667889999999999999999999987752
Q ss_pred cccccccccccCCCeEeCCCCCc-----ccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHHH
Q 006254 172 DTAGNLKTQIARSPFVQIPLGVT-----EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLN 246 (653)
Q Consensus 172 ~~~~~~~~~~~~~~fv~l~~~~~-----~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~ 246 (653)
...||+.+++... +..+||.. ++.+.|.....+|.+..|++|+||||||+.|+..+|..|+.
T Consensus 56 ----------~~~pfv~v~c~~~~~~~~~~~lfg~~---~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~ 122 (326)
T PRK11608 56 ----------WQGPFISLNCAALNENLLDSELFGHE---AGAFTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLR 122 (326)
T ss_pred ----------cCCCeEEEeCCCCCHHHHHHHHcccc---ccccCCcccccCCchhccCCCeEEeCChhhCCHHHHHHHHH
Confidence 3568888877765 34577753 55666766667899999999999999999999999999999
Q ss_pred HHHcCceEEeeCCeeEEeecCcEEEEEecCC------CCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhH
Q 006254 247 VLTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNE 320 (653)
Q Consensus 247 ~l~~g~~~v~r~G~s~~~p~~~~lIattNp~------eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~ 320 (653)
+++++. +.+.|.....+.++++|+||+.+ ++.++++|++||... .|..|+.++++.||..++.+|....
T Consensus 123 ~l~~~~--~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l~~~-~i~lPpLReR~eDI~~L~~~fl~~~-- 197 (326)
T PRK11608 123 VIEYGE--LERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLDRLAFD-VVQLPPLRERQSDIMLMAEHFAIQM-- 197 (326)
T ss_pred HHhcCc--EEeCCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHHhcCCC-EEECCChhhhhhhHHHHHHHHHHHH--
Confidence 999997 67878888888899999999974 578999999999765 5666889999999999888875421
Q ss_pred HhhhhhhhhhHHHHHHHHHHhhhcc--cCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHH
Q 006254 321 VFKMVEEETDLAKTQIILAREYLKD--VAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDL 395 (653)
Q Consensus 321 ~~~~~~~~~~~l~~~i~~ar~~l~~--v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv 395 (653)
+++.-.. ..+++++++.|..+.|++|+ |...++++.+- .......++.+|+
T Consensus 198 ------------------~~~~~~~~~~~~s~~al~~L~~y~WPGNv---rEL~~vl~~a~---~~~~~~~~~~~~l 250 (326)
T PRK11608 198 ------------------CRELGLPLFPGFTERARETLLNYRWPGNI---RELKNVVERSV---YRHGTSEYPLDNI 250 (326)
T ss_pred ------------------HHHhCCCCCCCCCHHHHHHHHhCCCCcHH---HHHHHHHHHHH---HhcCCCCCchhhc
Confidence 1121112 47999999999999999987 55555554332 2333334555443
No 26
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=99.89 E-value=1.8e-23 Score=223.19 Aligned_cols=260 Identities=21% Similarity=0.224 Sum_probs=182.0
Q ss_pred CceechHHHHHHHHHhcccCC------------CceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccc
Q 006254 95 AAVVGQDAIKTALLLGAIDRE------------IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWE 162 (653)
Q Consensus 95 ~~IvGq~~~k~aL~~~av~p~------------~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~ 162 (653)
..|.|.+.+|.++++.++... .-+|||.|.||||||.|.+.++.+.|+-.
T Consensus 24 P~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v------------------ 85 (331)
T PF00493_consen 24 PSIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSV------------------ 85 (331)
T ss_dssp STTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEE------------------
T ss_pred CcCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCceE------------------
Confidence 468999999999988777542 13699999999999999999988876311
Q ss_pred ccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHH
Q 006254 163 DGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISN 242 (653)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~ 242 (653)
+.-..+.+...|+..+ .+.-.+|.+..++|.+..|++||++|||++.++.+..+
T Consensus 86 ------------------------~~~g~~~s~~gLta~~--~~d~~~~~~~leaGalvlad~GiccIDe~dk~~~~~~~ 139 (331)
T PF00493_consen 86 ------------------------YTSGKGSSAAGLTASV--SRDPVTGEWVLEAGALVLADGGICCIDEFDKMKEDDRD 139 (331)
T ss_dssp ------------------------EEECCGSTCCCCCEEE--CCCGGTSSECEEE-HHHHCTTSEEEECTTTT--CHHHH
T ss_pred ------------------------EECCCCcccCCcccee--ccccccceeEEeCCchhcccCceeeecccccccchHHH
Confidence 1112234444455543 23334577889999999999999999999999999999
Q ss_pred HHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCC------------cccHHHHhhhcccccccCCCCHhhHHHHHHH
Q 006254 243 LLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG------------VVREHLLDRIAINLSADLPMTFEDRVAAVGI 310 (653)
Q Consensus 243 ~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg------------~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~ 310 (653)
.|+++|+.+.+.|...|.....+++..|+|++||..| .++++|++||++++.+..+++.+.-..|.+.
T Consensus 140 ~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~ 219 (331)
T PF00493_consen 140 ALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEH 219 (331)
T ss_dssp HHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHH
T ss_pred HHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceE
Confidence 9999999999999999999999999999999999764 3778999999999877656665544445443
Q ss_pred HHHHHhhhhHHh-------hh--hhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcC----------CCCcchH
Q 006254 311 ATQFQERSNEVF-------KM--VEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGG----------CQGHRAE 371 (653)
Q Consensus 311 ~~~~~~~~~~~~-------~~--~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~----------i~s~R~~ 371 (653)
+ .+...... .. ..-..+.++..|..+|... ...+++++.++|.++..... ..+.|..
T Consensus 220 i---l~~~~~~~~~~~~~~~~~~~~~~~~~lr~yI~yar~~~-~P~ls~ea~~~I~~~Yv~lR~~~~~~~~~~~iT~R~L 295 (331)
T PF00493_consen 220 I---LDSHRNGKKSKEKKIKKNDKPISEDLLRKYIAYARQNI-HPVLSEEAKELIINYYVELRKESKSNNKSIPITIRQL 295 (331)
T ss_dssp H---HTTT---S--------SSS-TT-HCCCHHHHHHHHHHC---EE-HHCHHHHHHHHCCCCHCHHCHSS-B-SSCCCC
T ss_pred E---EeccccccccccccccccCCccCHHHHHHHHHHHHhhc-ccccCHHHHHHHHHHHHHhcccccccccccccchhhH
Confidence 3 22222221 11 2334567789999998444 23799999999998864431 2468999
Q ss_pred HHHHHHHHHHHHHcCCCCccHHHHHHHHHHH
Q 006254 372 LYAARVAKCLAALEGREKVNVDDLKKAVELV 402 (653)
Q Consensus 372 i~llr~Ara~Aal~gr~~Vt~eDv~~A~~lv 402 (653)
..++|+|.++|.+..++.|+.+|+..|+.++
T Consensus 296 eSLIRLseA~AKl~lr~~V~~~Dv~~Ai~L~ 326 (331)
T PF00493_consen 296 ESLIRLSEAHAKLRLRDEVTEEDVEEAIRLF 326 (331)
T ss_dssp CHHHHHHHHHHHCTTSSECSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCceeHHHHHHHHHHH
Confidence 9999999999999999999999999999876
No 27
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.88 E-value=2.6e-22 Score=227.99 Aligned_cols=237 Identities=25% Similarity=0.338 Sum_probs=187.1
Q ss_pred CCCCCCCceechHHHHHHH--HHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccccc
Q 006254 89 RQFFPLAAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLD 166 (653)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL--~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~ 166 (653)
.+.+.|+.|+|++..++.+ .+..+.....+|||+||+||||+++|++||...++
T Consensus 190 ~~~~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r------------------------ 245 (534)
T TIGR01817 190 RRSGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPR------------------------ 245 (534)
T ss_pred cccCccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCC------------------------
Confidence 3457899999999888877 33344567889999999999999999999998752
Q ss_pred ccccccccccccccccCCCeEeCCCCCc-----ccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHH
Q 006254 167 EKAEYDTAGNLKTQIARSPFVQIPLGVT-----EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGIS 241 (653)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~fv~l~~~~~-----~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~ 241 (653)
...||+.+++... +..+||+. ++.++|.....+|.+..|++|+||||||+.|+..+|
T Consensus 246 ---------------~~~pfv~i~c~~~~~~~~~~~lfg~~---~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q 307 (534)
T TIGR01817 246 ---------------AKRPFVKVNCAALSETLLESELFGHE---KGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQ 307 (534)
T ss_pred ---------------CCCCeEEeecCCCCHHHHHHHHcCCC---CCccCCCCcCCCCcccccCCCeEEEechhhCCHHHH
Confidence 3568888777654 34677763 566667766778999999999999999999999999
Q ss_pred HHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCC------CCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHH
Q 006254 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQ 315 (653)
Q Consensus 242 ~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~------eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~ 315 (653)
..|+.+++++. +.+.|.....+.++.+|+++|.+ .+.++++|++||... .|..|+.++++.||..++.+|.
T Consensus 308 ~~Ll~~l~~~~--~~~~~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~~~-~i~lPpLreR~eDi~~L~~~~l 384 (534)
T TIGR01817 308 AKLLRVLQEGE--FERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVV-PIFLPPLRERREDIPLLAEAFL 384 (534)
T ss_pred HHHHHHHhcCc--EEECCCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHhcCC-eeeCCCcccccccHHHHHHHHH
Confidence 99999999988 67777777788899999999864 478999999999876 6677889999999999888875
Q ss_pred hhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHH
Q 006254 316 ERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDL 395 (653)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv 395 (653)
... +++.-..+.+++++++.|..+.|++|+ |...++++.+ +.+.....|+.+|+
T Consensus 385 ~~~--------------------~~~~~~~~~~s~~a~~~L~~~~WPGNv---rEL~~v~~~a---~~~~~~~~I~~~~l 438 (534)
T TIGR01817 385 EKF--------------------NRENGRPLTITPSAIRVLMSCKWPGNV---RELENCLERT---ATLSRSGTITRSDF 438 (534)
T ss_pred HHH--------------------HHHcCCCCCCCHHHHHHHHhCCCCChH---HHHHHHHHHH---HHhCCCCcccHHHC
Confidence 421 111112278999999999999999987 5555555443 33344568999887
Q ss_pred H
Q 006254 396 K 396 (653)
Q Consensus 396 ~ 396 (653)
.
T Consensus 439 ~ 439 (534)
T TIGR01817 439 S 439 (534)
T ss_pred c
Confidence 4
No 28
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.88 E-value=4.6e-22 Score=224.34 Aligned_cols=223 Identities=25% Similarity=0.315 Sum_probs=180.9
Q ss_pred CCCceechHHHHHHH--HHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccccccccc
Q 006254 93 PLAAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAE 170 (653)
Q Consensus 93 ~f~~IvGq~~~k~aL--~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~ 170 (653)
.+..|+|++..++.+ .+..+.+...+|||+|++||||+++|++||...++
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r---------------------------- 236 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPR---------------------------- 236 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCc----------------------------
Confidence 678999999988877 45556678899999999999999999999998762
Q ss_pred ccccccccccccCCCeEeCCCCCc-----ccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHH
Q 006254 171 YDTAGNLKTQIARSPFVQIPLGVT-----EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLL 245 (653)
Q Consensus 171 ~~~~~~~~~~~~~~~fv~l~~~~~-----~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll 245 (653)
.+.||+.+.+... ++.|||+. ++.++|.....+|.+..|++|+||||||+.|+..+|..|+
T Consensus 237 -----------~~~p~v~v~c~~~~~~~~e~~lfG~~---~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll 302 (509)
T PRK05022 237 -----------ADKPLVYLNCAALPESLAESELFGHV---KGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLL 302 (509)
T ss_pred -----------CCCCeEEEEcccCChHHHHHHhcCcc---ccccCCCcccCCcchhhcCCCEEEecChhhCCHHHHHHHH
Confidence 3567777665544 45788864 5677777777889999999999999999999999999999
Q ss_pred HHHHcCceEEeeCCeeEEeecCcEEEEEecCC------CCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhh
Q 006254 246 NVLTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSN 319 (653)
Q Consensus 246 ~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~------eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~ 319 (653)
.+++++. +.+.|.....+.++.+|++||.+ .+.++++|++||... .|..|+.++++.||..++.+|....+
T Consensus 303 ~~l~~~~--~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~rl~~~-~i~lPpLreR~eDI~~L~~~fl~~~~ 379 (509)
T PRK05022 303 RVLQYGE--IQRVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYHRLSVF-PLSVPPLRERGDDVLLLAGYFLEQNR 379 (509)
T ss_pred HHHhcCC--EeeCCCCcceecceEEEEecCCCHHHHHHcCCccHHHHhccccc-EeeCCCchhchhhHHHHHHHHHHHHH
Confidence 9999998 67888888888899999999964 478999999999886 67778999999999998888854211
Q ss_pred HHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Q 006254 320 EVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLA 382 (653)
Q Consensus 320 ~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~A 382 (653)
. +.....+.+++++++.|..|.|++|+ |...++++.|-..+
T Consensus 380 ~-------------------~~~~~~~~~s~~a~~~L~~y~WPGNv---rEL~~~i~ra~~~~ 420 (509)
T PRK05022 380 A-------------------RLGLRSLRLSPAAQAALLAYDWPGNV---RELEHVISRAALLA 420 (509)
T ss_pred H-------------------HcCCCCCCCCHHHHHHHHhCCCCCcH---HHHHHHHHHHHHhc
Confidence 1 11224578999999999999999987 55556665544333
No 29
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.87 E-value=1.3e-22 Score=200.52 Aligned_cols=208 Identities=19% Similarity=0.200 Sum_probs=134.7
Q ss_pred cccCCCCCCCCceechHHHHHHHHH--hcc---cCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCC
Q 006254 85 DSYGRQFFPLAAVVGQDAIKTALLL--GAI---DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPD 159 (653)
Q Consensus 85 ~~~~~~~~~f~~IvGq~~~k~aL~~--~av---~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~ 159 (653)
.....+|..|+++|||++++..+.+ .++ .....++|||||||+||||||+.|++.+.
T Consensus 14 l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~------------------ 75 (233)
T PF05496_consen 14 LAERLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELG------------------ 75 (233)
T ss_dssp HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT------------------
T ss_pred hHHhcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccC------------------
Confidence 3445678899999999999998732 222 12457899999999999999999999884
Q ss_pred cccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHH
Q 006254 160 EWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEG 239 (653)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~ 239 (653)
.+|...+.... -+.-|+..-+. ....+.||||||||+|+..
T Consensus 76 ------------------------~~~~~~sg~~i----~k~~dl~~il~-----------~l~~~~ILFIDEIHRlnk~ 116 (233)
T PF05496_consen 76 ------------------------VNFKITSGPAI----EKAGDLAAILT-----------NLKEGDILFIDEIHRLNKA 116 (233)
T ss_dssp --------------------------EEEEECCC------SCHHHHHHHH-----------T--TT-EEEECTCCC--HH
T ss_pred ------------------------CCeEeccchhh----hhHHHHHHHHH-----------hcCCCcEEEEechhhccHH
Confidence 33433322211 11112211110 1124569999999999999
Q ss_pred HHHHHHHHHHcCceEEe-eCC---eeEEee-cCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHH
Q 006254 240 ISNLLLNVLTEGVNIVE-REG---ISFKHP-CKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQF 314 (653)
Q Consensus 240 ~~~~Ll~~l~~g~~~v~-r~G---~s~~~p-~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~ 314 (653)
+++.|+.+|+++.+.+- -.| .+.+.+ .+|.+||||+ ..|.|+.+|+|||++...+. .++.++..+|+.+.
T Consensus 117 ~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATT-r~g~ls~pLrdRFgi~~~l~-~Y~~~el~~Iv~r~--- 191 (233)
T PF05496_consen 117 QQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATT-RAGLLSSPLRDRFGIVLRLE-FYSEEELAKIVKRS--- 191 (233)
T ss_dssp HHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEES-SGCCTSHCCCTTSSEEEE-----THHHHHHHHHHC---
T ss_pred HHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeec-cccccchhHHhhcceecchh-cCCHHHHHHHHHHH---
Confidence 99999999999997542 222 234444 3699999999 88999999999999988888 48888888887632
Q ss_pred HhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHH
Q 006254 315 QERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAAL 384 (653)
Q Consensus 315 ~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal 384 (653)
...-++.++++....|+..+.. ..|-+..+++.++.+|..
T Consensus 192 --------------------------a~~l~i~i~~~~~~~Ia~rsrG----tPRiAnrll~rvrD~a~v 231 (233)
T PF05496_consen 192 --------------------------ARILNIEIDEDAAEEIARRSRG----TPRIANRLLRRVRDFAQV 231 (233)
T ss_dssp --------------------------CHCTT-EE-HHHHHHHHHCTTT----SHHHHHHHHHHHCCCCCC
T ss_pred --------------------------HHHhCCCcCHHHHHHHHHhcCC----ChHHHHHHHHHHHHHHHH
Confidence 1233578999988888665432 589999999988776643
No 30
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.87 E-value=1e-21 Score=201.81 Aligned_cols=231 Identities=22% Similarity=0.331 Sum_probs=188.2
Q ss_pred CCCCCCceechHHHHHHHHHh--cccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccc
Q 006254 90 QFFPLAAVVGQDAIKTALLLG--AIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDE 167 (653)
Q Consensus 90 ~~~~f~~IvGq~~~k~aL~~~--av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~ 167 (653)
...+|+.|++.+..++.+... .++....++||.|++||||..+||+.|..+|
T Consensus 199 ~~~~F~~~v~~S~~mk~~v~qA~k~AmlDAPLLI~GeTGTGKdLlAkaCH~~S~-------------------------- 252 (511)
T COG3283 199 DVSGFEQIVAVSPKMKHVVEQAQKLAMLDAPLLITGETGTGKDLLAKACHLASP-------------------------- 252 (511)
T ss_pred cccchHHHhhccHHHHHHHHHHHHhhccCCCeEEecCCCchHHHHHHHHhhcCc--------------------------
Confidence 456899999999877776322 2344578999999999999999999999887
Q ss_pred cccccccccccccccCCCeEeC-----CCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHH
Q 006254 168 KAEYDTAGNLKTQIARSPFVQI-----PLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISN 242 (653)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~fv~l-----~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~ 242 (653)
+.+.||+.+ |.+..++++||+-- | ..-.+|+|+.|++|++|+|||..+++.+|.
T Consensus 253 -------------R~~~pFlalNCA~lPe~~aEsElFG~ap-------g-~~gk~GffE~AngGTVlLDeIgEmSp~lQa 311 (511)
T COG3283 253 -------------RHSKPFLALNCASLPEDAAESELFGHAP-------G-DEGKKGFFEQANGGTVLLDEIGEMSPRLQA 311 (511)
T ss_pred -------------ccCCCeeEeecCCCchhHhHHHHhcCCC-------C-CCCccchhhhccCCeEEeehhhhcCHHHHH
Confidence 346788774 55566778999631 2 345689999999999999999999999999
Q ss_pred HHHHHHHcCceEEeeCCeeEEeecCcEEEEEecC------CCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHh
Q 006254 243 LLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP------EEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQE 316 (653)
Q Consensus 243 ~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp------~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~ 316 (653)
.||..+.+|. +.|.|....+..++++|+||.- +.|.++++|++|+++. ++..|+.+++-.+|..++..|..
T Consensus 312 KLLRFL~DGt--FRRVGee~Ev~vdVRVIcatq~nL~~lv~~g~fReDLfyRLNVL-tl~~PpLRer~~di~pL~e~Fv~ 388 (511)
T COG3283 312 KLLRFLNDGT--FRRVGEDHEVHVDVRVICATQVNLVELVQKGKFREDLFYRLNVL-TLNLPPLRERPQDIMPLAELFVQ 388 (511)
T ss_pred HHHHHhcCCc--eeecCCcceEEEEEEEEecccccHHHHHhcCchHHHHHHHhhee-eecCCccccCcccchHHHHHHHH
Confidence 9999999998 8999999999999999999985 4689999999999998 89999999999999999988865
Q ss_pred hhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHH
Q 006254 317 RSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDL 395 (653)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv 395 (653)
..+. ....+..+++++.+.+|..|.|.+|+ |..-+++ -+|.+.++|. .++.+|+
T Consensus 389 q~s~-------------------elg~p~pkl~~~~~~~L~~y~WpGNV---RqL~N~i--yRA~s~~Eg~-~l~i~~i 442 (511)
T COG3283 389 QFSD-------------------ELGVPRPKLAADLLTVLTRYAWPGNV---RQLKNAI--YRALTLLEGY-ELRIEDI 442 (511)
T ss_pred HHHH-------------------HhCCCCCccCHHHHHHHHHcCCCccH---HHHHHHH--HHHHHHhccC-ccchhhc
Confidence 3322 12335568999999999999999987 6666654 4556666664 6666666
No 31
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.87 E-value=1.6e-21 Score=220.08 Aligned_cols=236 Identities=17% Similarity=0.223 Sum_probs=181.3
Q ss_pred CCCCCCceechHHHHHHHH--HhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccc
Q 006254 90 QFFPLAAVVGQDAIKTALL--LGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDE 167 (653)
Q Consensus 90 ~~~~f~~IvGq~~~k~aL~--~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~ 167 (653)
..+.|++++|.+..++.+. +..++....+|||+|++||||+++|+++|....
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~-------------------------- 252 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSP-------------------------- 252 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCC--------------------------
Confidence 4678999999998766662 223445678999999999999999999999765
Q ss_pred cccccccccccccccCCCeEeCCCCCcc-----cceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHH
Q 006254 168 KAEYDTAGNLKTQIARSPFVQIPLGVTE-----DRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISN 242 (653)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~fv~l~~~~~~-----~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~ 242 (653)
+...||+.+++.... +.|||.. .+.++|.....+|+|..|++|+||||||+.|+..+|.
T Consensus 253 -------------r~~~pfv~inca~~~~~~~e~elFG~~---~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~~~Q~ 316 (520)
T PRK10820 253 -------------RGKKPFLALNCASIPDDVVESELFGHA---PGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPRMQA 316 (520)
T ss_pred -------------CCCCCeEEeccccCCHHHHHHHhcCCC---CCCcCCcccCCCChhhhcCCCEEEEeChhhCCHHHHH
Confidence 235688887776553 3567753 2344455455689999999999999999999999999
Q ss_pred HHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCC------CCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHh
Q 006254 243 LLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQE 316 (653)
Q Consensus 243 ~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~------eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~ 316 (653)
.|+++++++. +.+.|.....+.++++|++|+.+ .|.++++|++||... .+..|+.++++.||..++.+|..
T Consensus 317 ~Ll~~l~~~~--~~~~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~~~-~i~lPpLreR~~Di~~L~~~fl~ 393 (520)
T PRK10820 317 KLLRFLNDGT--FRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNVL-TLNLPPLRDRPQDIMPLTELFVA 393 (520)
T ss_pred HHHHHHhcCC--cccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHhhcCee-EEeCCCcccChhHHHHHHHHHHH
Confidence 9999999997 67888887788889999998853 478999999999875 77778999999999998888754
Q ss_pred hhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHH
Q 006254 317 RSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDL 395 (653)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv 395 (653)
..+ .+.....+.+++++++.|..+.|++|+ |...+++..|- .......|+.+|+
T Consensus 394 ~~~-------------------~~~g~~~~~ls~~a~~~L~~y~WPGNv---reL~nvl~~a~---~~~~~~~i~~~~~ 447 (520)
T PRK10820 394 RFA-------------------DEQGVPRPKLAADLNTVLTRYGWPGNV---RQLKNAIYRAL---TQLEGYELRPQDI 447 (520)
T ss_pred HHH-------------------HHcCCCCCCcCHHHHHHHhcCCCCCHH---HHHHHHHHHHH---HhCCCCcccHHHc
Confidence 211 111223457999999999999999987 55555543332 2334457888886
No 32
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.86 E-value=2.3e-21 Score=224.79 Aligned_cols=235 Identities=16% Similarity=0.204 Sum_probs=183.3
Q ss_pred CCCCCceechHHHHHHH--HHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccccccc
Q 006254 91 FFPLAAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (653)
Q Consensus 91 ~~~f~~IvGq~~~k~aL--~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~ 168 (653)
.++|++++|.+..++.+ .+..+.....+|||+|++||||+++|++||..++
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~--------------------------- 373 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESE--------------------------- 373 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCC---------------------------
Confidence 56799999999877766 3334445678899999999999999999999875
Q ss_pred ccccccccccccccCCCeEeCCCCCc-----ccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHH
Q 006254 169 AEYDTAGNLKTQIARSPFVQIPLGVT-----EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNL 243 (653)
Q Consensus 169 ~~~~~~~~~~~~~~~~~fv~l~~~~~-----~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~ 243 (653)
+.+.||+.+.+... +++|||... .+.....+|.+..|++|+||||||+.|+..+|..
T Consensus 374 ------------r~~~pfv~vnc~~~~~~~~~~elfg~~~------~~~~~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~ 435 (638)
T PRK11388 374 ------------RAAGPYIAVNCQLYPDEALAEEFLGSDR------TDSENGRLSKFELAHGGTLFLEKVEYLSPELQSA 435 (638)
T ss_pred ------------ccCCCeEEEECCCCChHHHHHHhcCCCC------cCccCCCCCceeECCCCEEEEcChhhCCHHHHHH
Confidence 23578888776654 456888541 1223446789999999999999999999999999
Q ss_pred HHHHHHcCceEEeeCCeeEEeecCcEEEEEecCC------CCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhh
Q 006254 244 LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQER 317 (653)
Q Consensus 244 Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~------eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~ 317 (653)
|+.+++++. +.+.|.....+.++.+|+|||.+ ++.++++|++||... .|..|+.++++.||..++.+|...
T Consensus 436 Ll~~l~~~~--~~~~~~~~~~~~~~riI~~t~~~l~~~~~~~~f~~dL~~~l~~~-~i~lPpLreR~~Di~~L~~~~l~~ 512 (638)
T PRK11388 436 LLQVLKTGV--ITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQLYYALHAF-EITIPPLRMRREDIPALVNNKLRS 512 (638)
T ss_pred HHHHHhcCc--EEeCCCCceEEeeEEEEEeccCCHHHHHhcCCChHHHhhhhcee-EEeCCChhhhhhHHHHHHHHHHHH
Confidence 999999998 67888888888899999999963 578999999999887 777889999989999988887542
Q ss_pred hhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHH
Q 006254 318 SNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKK 397 (653)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~ 397 (653)
. ++.....+.+++++++.|..|.|++|+ |.+.++++.+-. ......|+.+|+..
T Consensus 513 ~--------------------~~~~~~~~~~s~~a~~~L~~y~WPGNv---reL~~~l~~~~~---~~~~~~i~~~~lp~ 566 (638)
T PRK11388 513 L--------------------EKRFSTRLKIDDDALARLVSYRWPGND---FELRSVIENLAL---SSDNGRIRLSDLPE 566 (638)
T ss_pred H--------------------HHHhCCCCCcCHHHHHHHHcCCCCChH---HHHHHHHHHHHH---hCCCCeecHHHCch
Confidence 1 111222367999999999999999987 666666654332 23445788888765
Q ss_pred HH
Q 006254 398 AV 399 (653)
Q Consensus 398 A~ 399 (653)
.+
T Consensus 567 ~~ 568 (638)
T PRK11388 567 HL 568 (638)
T ss_pred hh
Confidence 44
No 33
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.86 E-value=1.9e-20 Score=193.94 Aligned_cols=214 Identities=21% Similarity=0.173 Sum_probs=143.3
Q ss_pred CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeEeCCCCCc
Q 006254 115 EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVT 194 (653)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~ 194 (653)
...+|||.||||||||++|++||..+.. +...++|++ ...
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~~lg~----~~~~i~~~~------------------------------------~~~ 59 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVARKRDR----PVMLINGDA------------------------------------ELT 59 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHhCC----CEEEEeCCc------------------------------------cCC
Confidence 4578999999999999999999987641 112233432 122
Q ss_pred ccceeeecchh--------------hhhccCCcccccccccc--ccCceEEecccccCCHHHHHHHHHHHHcCceEEee-
Q 006254 195 EDRLIGSVDVE--------------ESVKTGTTVFQPGLLAE--AHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVER- 257 (653)
Q Consensus 195 ~~~l~G~~d~~--------------~~~~~g~~~~~~Gll~~--A~~giL~IDEi~~l~~~~~~~Ll~~l~~g~~~v~r- 257 (653)
...++|..... +.-......+.+|.+.. ++|++|||||||++++++++.|+.+|+++.+.+.-
T Consensus 60 ~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~A~~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~ 139 (262)
T TIGR02640 60 TSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTLAVREGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGK 139 (262)
T ss_pred HHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHHHHHcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCC
Confidence 23333332100 00001223456777765 47899999999999999999999999999866632
Q ss_pred --CCeeEEeecCcEEEEEecCCC----CcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhH
Q 006254 258 --EGISFKHPCKPLLIATYNPEE----GVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDL 331 (653)
Q Consensus 258 --~G~s~~~p~~~~lIattNp~e----g~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~ 331 (653)
.+..+..+.+|++|+|+|+.. .+++++|++||.. +.++.| +.++..+|+... +
T Consensus 140 ~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~R~~~-i~i~~P-~~~~e~~Il~~~--~----------------- 198 (262)
T TIGR02640 140 RGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLDRLIT-IFMDYP-DIDTETAILRAK--T----------------- 198 (262)
T ss_pred CCCCceEecCCCCEEEEeeCCccccceecccHHHHhhcEE-EECCCC-CHHHHHHHHHHh--h-----------------
Confidence 233445566899999999864 2578999999954 588875 677666776532 1
Q ss_pred HHHHHHHHHhhhcccCCCHHHHHHHHHHHHhc------CCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHcCC
Q 006254 332 AKTQIILAREYLKDVAIGREQLKYLVMEALRG------GCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVILP 405 (653)
Q Consensus 332 l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~------~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~h 405 (653)
.++++.++.+++++... ...|.|+.|.+.+.+ +++.++..|+++|+...+.-||.|
T Consensus 199 ---------------~~~~~~~~~iv~~~~~~R~~~~~~~~~~r~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 260 (262)
T TIGR02640 199 ---------------DVAEDSAATIVRLVREFRASGDEITSGLRASLMIAEVA---TQQDIPVDVDDEDFVDLCIDILAS 260 (262)
T ss_pred ---------------CCCHHHHHHHHHHHHHHHhhCCccCCcHHHHHHHHHHH---HHcCCCCCCCcHHHHHHHHHHhcc
Confidence 12333344444332111 124678777766554 455779999999999999999999
Q ss_pred Cc
Q 006254 406 RS 407 (653)
Q Consensus 406 R~ 407 (653)
|.
T Consensus 261 ~~ 262 (262)
T TIGR02640 261 RV 262 (262)
T ss_pred CC
Confidence 83
No 34
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.85 E-value=2.2e-21 Score=187.32 Aligned_cols=152 Identities=28% Similarity=0.425 Sum_probs=120.0
Q ss_pred eechHHHHHHH--HHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccccccccccccc
Q 006254 97 VVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTA 174 (653)
Q Consensus 97 IvGq~~~k~aL--~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~~~~ 174 (653)
|||.+..++.+ .+..+.....+|||+|++||||+++|++||+..+
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~--------------------------------- 47 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSP--------------------------------- 47 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCST---------------------------------
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhh---------------------------------
Confidence 57887766666 3344556679999999999999999999999876
Q ss_pred ccccccccCCCeEeCCCCCcc-----cceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHHHHHH
Q 006254 175 GNLKTQIARSPFVQIPLGVTE-----DRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLT 249 (653)
Q Consensus 175 ~~~~~~~~~~~fv~l~~~~~~-----~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~l~ 249 (653)
+.+.||+.+++.... ..|||.. ++.+.|....+.|+|..|++|+||||||+.|++.+|..|+++|+
T Consensus 48 ------r~~~pfi~vnc~~~~~~~~e~~LFG~~---~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~ 118 (168)
T PF00158_consen 48 ------RKNGPFISVNCAALPEELLESELFGHE---KGAFTGARSDKKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLE 118 (168)
T ss_dssp ------TTTS-EEEEETTTS-HHHHHHHHHEBC---SSSSTTTSSEBEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHH
T ss_pred ------cccCCeEEEehhhhhcchhhhhhhccc---cccccccccccCCceeeccceEEeecchhhhHHHHHHHHHHHHh
Confidence 246899998887653 4688864 55666777778899999999999999999999999999999999
Q ss_pred cCceEEeeCCeeEEeecCcEEEEEecCC------CCcccHHHHhhhccc
Q 006254 250 EGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAIN 292 (653)
Q Consensus 250 ~g~~~v~r~G~s~~~p~~~~lIattNp~------eg~l~~aLldRf~~~ 292 (653)
++. +.+.|.....+.+++||++||.+ .|.|+++|++|+...
T Consensus 119 ~~~--~~~~g~~~~~~~~~RiI~st~~~l~~~v~~g~fr~dLy~rL~~~ 165 (168)
T PF00158_consen 119 EGK--FTRLGSDKPVPVDVRIIASTSKDLEELVEQGRFREDLYYRLNVF 165 (168)
T ss_dssp HSE--EECCTSSSEEE--EEEEEEESS-HHHHHHTTSS-HHHHHHHTTE
T ss_pred hch--hccccccccccccceEEeecCcCHHHHHHcCCChHHHHHHhceE
Confidence 998 78888888889999999999963 589999999999765
No 35
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.84 E-value=2.9e-20 Score=206.74 Aligned_cols=233 Identities=27% Similarity=0.317 Sum_probs=181.7
Q ss_pred CCCceechHHHHHHH--HHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccccccccc
Q 006254 93 PLAAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAE 170 (653)
Q Consensus 93 ~f~~IvGq~~~k~aL--~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~ 170 (653)
.+..++|.+..+..+ .+..+.+...+|+|.|++||||+++|+++|...+.
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~---------------------------- 188 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDR---------------------------- 188 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhCCc----------------------------
Confidence 566799988776666 33344556788999999999999999999998752
Q ss_pred ccccccccccccCCCeEeCCCCCc-----ccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHH
Q 006254 171 YDTAGNLKTQIARSPFVQIPLGVT-----EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLL 245 (653)
Q Consensus 171 ~~~~~~~~~~~~~~~fv~l~~~~~-----~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll 245 (653)
...||+.+.+... +..+||.. ++.++|.....+|++..|++|+||||||+.|+..+|..|+
T Consensus 189 -----------~~~~~v~v~c~~~~~~~~~~~lfg~~---~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~l~ 254 (445)
T TIGR02915 189 -----------KDKRFVAINCAAIPENLLESELFGYE---KGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLL 254 (445)
T ss_pred -----------CCCCeEEEECCCCChHHHHHHhcCCC---CCCcCCCccCCCCceeECCCCEEEEechhhCCHHHHHHHH
Confidence 2567777766654 44567753 6677777777899999999999999999999999999999
Q ss_pred HHHHcCceEEeeCCeeEEeecCcEEEEEecCC------CCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhh
Q 006254 246 NVLTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSN 319 (653)
Q Consensus 246 ~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~------eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~ 319 (653)
++++++. +.+.|....++.++++|+|||.+ +|.++++|++||... .|..|+.++++.||..++.+|.+..+
T Consensus 255 ~~l~~~~--~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~-~i~lPpLr~R~~Di~~l~~~~l~~~~ 331 (445)
T TIGR02915 255 RFLQERV--IERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFYRIAEI-SITIPPLRSRDGDAVLLANAFLERFA 331 (445)
T ss_pred HHHhhCe--EEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHHHhccc-eecCCCchhchhhHHHHHHHHHHHHH
Confidence 9999997 78888888889999999999974 478999999999876 77778999999999998887754211
Q ss_pred HHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHH
Q 006254 320 EVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDL 395 (653)
Q Consensus 320 ~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv 395 (653)
. +...+.+.+++++++.|..+.|++|+ |...++++.|- .+.....|+.+|+
T Consensus 332 ------------------~-~~~~~~~~~~~~a~~~L~~~~wpgNv---reL~~~i~~a~---~~~~~~~i~~~~l 382 (445)
T TIGR02915 332 ------------------R-ELKRKTKGFTDDALRALEAHAWPGNV---RELENKVKRAV---IMAEGNQITAEDL 382 (445)
T ss_pred ------------------H-HhCCCCCCCCHHHHHHHHhCCCCChH---HHHHHHHHHHH---HhCCCCcccHHHc
Confidence 1 11122357999999999999999987 55555554433 2333457777765
No 36
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.84 E-value=9.6e-20 Score=208.19 Aligned_cols=285 Identities=22% Similarity=0.291 Sum_probs=193.5
Q ss_pred CCCCCCCCceechHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcc-c----
Q 006254 88 GRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEW-E---- 162 (653)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~-~---- 162 (653)
..+..-|++|+||++++..+..++... .+++|+||||||||++++++++.++.-.....+ +--||.+.-.+ .
T Consensus 11 ~~~~~~~~~viG~~~a~~~l~~a~~~~--~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~-~~~n~~~~~~~~~~~v~ 87 (608)
T TIGR00764 11 PVPERLIDQVIGQEEAVEIIKKAAKQK--RNVLLIGEPGVGKSMLAKAMAELLPDEELEDIL-VYPNPEDPNMPRIVEVP 87 (608)
T ss_pred CcchhhHhhccCHHHHHHHHHHHHHcC--CCEEEECCCCCCHHHHHHHHHHHcCchhheeEE-EEeCCCCCchHHHHHHH
Confidence 345567899999999999998877643 699999999999999999999999854212112 12233221111 0
Q ss_pred ccccccc---------------------------c---cc----------------------------cccc-----ccc
Q 006254 163 DGLDEKA---------------------------E---YD----------------------------TAGN-----LKT 179 (653)
Q Consensus 163 ~~~~~~~---------------------------~---~~----------------------------~~~~-----~~~ 179 (653)
..+..++ . +. ..-. -+.
T Consensus 88 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~lv~~s 167 (608)
T TIGR00764 88 AGEGREIVEDYKKKAFKQPSSRNLLLFMIGFIVLSEYFLKNLPPNYLLAAVIAAALILLIFGFFIPRTSIMVPKLLVDNS 167 (608)
T ss_pred HhhchHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhcccchhceeeeeecCC
Confidence 0000000 0 00 0000 011
Q ss_pred cccCCCeEeCCCCCcccceeeecchhhhhcc--------CCccccccccccccCceEEecccccCCHHHHHHHHHHHHcC
Q 006254 180 QIARSPFVQIPLGVTEDRLIGSVDVEESVKT--------GTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEG 251 (653)
Q Consensus 180 ~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~--------g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~l~~g 251 (653)
.+...|||..+. .+...|+|.+. ...+. .....++|+|.+||+|+|||||++.|++..|..|+.+|+++
T Consensus 168 ~~~~~P~v~~~~-~~~~~L~G~i~--~~~~~g~~g~~~~~~~~i~~G~L~~AngGtL~Ldei~~L~~~~q~~Ll~~L~~~ 244 (608)
T TIGR00764 168 GKKKAPFVDATG-AHAGALLGDVR--HDPFQGSGGLGTPAHERVEAGAIHRAHKGVLYIDEIKTMPLEVQQYLLTALQDK 244 (608)
T ss_pred CCCCCCEEEeCC-CChHHCcccee--eccccCccccccCccccCCCCceEECCCCEEEEEChHhCCHHHHHHHHHHHHhC
Confidence 245678887432 23357888753 22222 22356799999999999999999999999999999999999
Q ss_pred ceEEeeC-----Ce---eEEeecCcEEEEEecCCC-CcccHHHHhhhc---cccccc--CCCCHhhHHHHHHHHHHHHhh
Q 006254 252 VNIVERE-----GI---SFKHPCKPLLIATYNPEE-GVVREHLLDRIA---INLSAD--LPMTFEDRVAAVGIATQFQER 317 (653)
Q Consensus 252 ~~~v~r~-----G~---s~~~p~~~~lIattNp~e-g~l~~aLldRf~---~~v~l~--~p~~~~~r~~I~~~~~~~~~~ 317 (653)
.+.+... |. ....|++|.+|+++|+++ ..++++|++||. +.+.+. .|.+.+.+.++.......
T Consensus 245 ~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~--- 321 (608)
T TIGR00764 245 KFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHPALRSRIRGYGYEVYMKDTMPDTPENRDKLVQFVAQE--- 321 (608)
T ss_pred cEEecCccccccccccCCCCCccceEEEEECCHHHHhhcCHHHHHHhcCCeEEEEeeccCCCCHHHHHHHHHHHHHH---
Confidence 9554321 11 234688999999999864 479999999999 555443 456677766665432211
Q ss_pred hhHHhhhhhhhhhHHHHHHHHHHh-hhcccCCCHHHHHHHHHHHHh-cCCC-----CcchHHHHHHHHHHHHHHcCCCCc
Q 006254 318 SNEVFKMVEEETDLAKTQIILARE-YLKDVAIGREQLKYLVMEALR-GGCQ-----GHRAELYAARVAKCLAALEGREKV 390 (653)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~i~~ar~-~l~~v~is~~~l~~l~~~~~~-~~i~-----s~R~~i~llr~Ara~Aal~gr~~V 390 (653)
+. +. .++ .+++++++.|.+++.+ .+.. ..|....++|.|..+|..++...|
T Consensus 322 ------------------~~--r~G~l~--~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I 379 (608)
T TIGR00764 322 ------------------VK--KDGRIP--HFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYV 379 (608)
T ss_pred ------------------HH--HhCCCC--cCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHhcCCcee
Confidence 10 11 122 7999999999987654 2322 358888999999999999999999
Q ss_pred cHHHHHHHHHHHc
Q 006254 391 NVDDLKKAVELVI 403 (653)
Q Consensus 391 t~eDv~~A~~lvl 403 (653)
+.+||.+|++...
T Consensus 380 ~~ehV~~Ai~~~~ 392 (608)
T TIGR00764 380 TAEHVLKAKKLAK 392 (608)
T ss_pred cHHHHHHHHHHHH
Confidence 9999999988664
No 37
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.83 E-value=4.9e-20 Score=206.25 Aligned_cols=236 Identities=26% Similarity=0.397 Sum_probs=184.2
Q ss_pred CCCCceechHHHHHHH--HHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccc
Q 006254 92 FPLAAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKA 169 (653)
Q Consensus 92 ~~f~~IvGq~~~k~aL--~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~ 169 (653)
.++.+++|.+..++.+ .+..+.+...+|||.|++||||+++|++||..+++
T Consensus 135 ~~~~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~--------------------------- 187 (469)
T PRK10923 135 GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPR--------------------------- 187 (469)
T ss_pred cccccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcCCC---------------------------
Confidence 3577899998777666 33344567788999999999999999999998752
Q ss_pred cccccccccccccCCCeEeCCCCCc-----ccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHH
Q 006254 170 EYDTAGNLKTQIARSPFVQIPLGVT-----EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLL 244 (653)
Q Consensus 170 ~~~~~~~~~~~~~~~~fv~l~~~~~-----~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~L 244 (653)
...||+.+.+... +..+||+. ++.++|....+.|.+..+++|+||||||+.|+...|..|
T Consensus 188 ------------~~~~~i~i~c~~~~~~~~~~~lfg~~---~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~~~q~~L 252 (469)
T PRK10923 188 ------------AKAPFIALNMAAIPKDLIESELFGHE---KGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRL 252 (469)
T ss_pred ------------CCCCeEeeeCCCCCHHHHHHHhcCCC---CCCCCCCCcCCCCCeeECCCCEEEEeccccCCHHHHHHH
Confidence 3578888776554 44677864 567777777889999999999999999999999999999
Q ss_pred HHHHHcCceEEeeCCeeEEeecCcEEEEEecCC------CCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhh
Q 006254 245 LNVLTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERS 318 (653)
Q Consensus 245 l~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~------eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~ 318 (653)
+++++++. +.+.|.....+.++++|+|++.+ .|.++++|++||... .|..|+.++++.||..++.+|....
T Consensus 253 ~~~l~~~~--~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~-~i~~PpLreR~~Di~~l~~~~l~~~ 329 (469)
T PRK10923 253 LRVLADGQ--FYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVI-RVHLPPLRERREDIPRLARHFLQVA 329 (469)
T ss_pred HHHHhcCc--EEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHHHhcce-eecCCCcccchhhHHHHHHHHHHHH
Confidence 99999998 66777777777889999999964 578999999999765 6666889999999999988885421
Q ss_pred hHHhhhhhhhhhHHHHHHHHHHhh-hcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHH
Q 006254 319 NEVFKMVEEETDLAKTQIILAREY-LKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKK 397 (653)
Q Consensus 319 ~~~~~~~~~~~~~l~~~i~~ar~~-l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~ 397 (653)
++.. ...+.+++++++.|..|.|.+|+ |...++++. .+.+.....|+.+|+..
T Consensus 330 --------------------~~~~~~~~~~~~~~a~~~L~~~~wpgNv---~eL~~~i~~---~~~~~~~~~i~~~~l~~ 383 (469)
T PRK10923 330 --------------------ARELGVEAKLLHPETEAALTRLAWPGNV---RQLENTCRW---LTVMAAGQEVLIQDLPG 383 (469)
T ss_pred --------------------HHHcCCCCCCcCHHHHHHHHhCCCCChH---HHHHHHHHH---HHHhCCCCcccHHHCcH
Confidence 1111 22346999999999999999987 454455433 33344455889888754
Q ss_pred H
Q 006254 398 A 398 (653)
Q Consensus 398 A 398 (653)
.
T Consensus 384 ~ 384 (469)
T PRK10923 384 E 384 (469)
T ss_pred h
Confidence 3
No 38
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.83 E-value=3.9e-20 Score=215.97 Aligned_cols=220 Identities=22% Similarity=0.241 Sum_probs=174.5
Q ss_pred CCCCCceechHHHHHHH--HHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccccccc
Q 006254 91 FFPLAAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (653)
Q Consensus 91 ~~~f~~IvGq~~~k~aL--~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~ 168 (653)
...|++++|++..++.+ .+..+.....+|||.||+|||||++|++||....+
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r-------------------------- 425 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGR-------------------------- 425 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCC--------------------------
Confidence 35788999999888877 34445567789999999999999999999998752
Q ss_pred ccccccccccccccCCCeEeCCCCC-----cccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHH
Q 006254 169 AEYDTAGNLKTQIARSPFVQIPLGV-----TEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNL 243 (653)
Q Consensus 169 ~~~~~~~~~~~~~~~~~fv~l~~~~-----~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~ 243 (653)
.+.||+.+.+.. .+..+||+. ++.++|....+.|.+..|++|+||||||+.|+.++|..
T Consensus 426 -------------~~~~~v~i~c~~~~~~~~~~~lfg~~---~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~~~Q~~ 489 (686)
T PRK15429 426 -------------NNRRMVKMNCAAMPAGLLESDLFGHE---RGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPK 489 (686)
T ss_pred -------------CCCCeEEEecccCChhHhhhhhcCcc---cccccccccchhhHHHhcCCCeEEEechhhCCHHHHHH
Confidence 256777665543 355788863 45566665667789999999999999999999999999
Q ss_pred HHHHHHcCceEEeeCCeeEEeecCcEEEEEecCC------CCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhh
Q 006254 244 LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQER 317 (653)
Q Consensus 244 Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~------eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~ 317 (653)
|+.+++++. +.+.|.....+.++++|++||.+ .+.|+.+|++||... .|..|+.++++.||..++.+|...
T Consensus 490 L~~~l~~~~--~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~~~-~i~lPpLreR~~Di~~L~~~~l~~ 566 (686)
T PRK15429 490 LLRVLQEQE--FERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVF-PIHLPPLRERPEDIPLLVKAFTFK 566 (686)
T ss_pred HHHHHHhCC--EEeCCCCCcccceEEEEEeCCCCHHHHHHcCcccHHHHhccCee-EEeCCChhhhHhHHHHHHHHHHHH
Confidence 999999997 77888877778899999999964 478999999999887 677799999999999988887542
Q ss_pred hhHHhhhhhhhhhHHHHHHHHHHhhh-cccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 006254 318 SNEVFKMVEEETDLAKTQIILAREYL-KDVAIGREQLKYLVMEALRGGCQGHRAELYAARVA 378 (653)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~i~~ar~~l-~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~A 378 (653)
. +++.- +...+++++++.|..+.|++|+ |...++++.|
T Consensus 567 ~--------------------~~~~~~~~~~~s~~al~~L~~y~WPGNv---rEL~~~i~~a 605 (686)
T PRK15429 567 I--------------------ARRMGRNIDSIPAETLRTLSNMEWPGNV---RELENVIERA 605 (686)
T ss_pred H--------------------HHHcCCCCCCcCHHHHHHHHhCCCCCcH---HHHHHHHHHH
Confidence 1 11211 2236999999999999999987 5555555443
No 39
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.83 E-value=2e-19 Score=181.03 Aligned_cols=224 Identities=21% Similarity=0.251 Sum_probs=166.2
Q ss_pred CCCCCCCCceechHHHHHHHHHh---cc--cCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccc
Q 006254 88 GRQFFPLAAVVGQDAIKTALLLG---AI--DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWE 162 (653)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~~~---av--~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~ 162 (653)
..+|..|+++|||+++|..|.+. +- +-...||||+||||.||||||..|++.+. .||
T Consensus 19 ~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emg---------vn~--------- 80 (332)
T COG2255 19 SLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELG---------VNL--------- 80 (332)
T ss_pred ccCcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhc---------CCe---------
Confidence 45688899999999999988332 22 22567899999999999999999999986 122
Q ss_pred ccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccc-cccCceEEecccccCCHHHH
Q 006254 163 DGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLA-EAHRGVLYIDEINLLDEGIS 241 (653)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~-~A~~giL~IDEi~~l~~~~~ 241 (653)
+ ....|.+.-+. |+. ++|. .-.+-|||||||+++++.+-
T Consensus 81 -----k------------~tsGp~leK~g-----------Dla------------aiLt~Le~~DVLFIDEIHrl~~~vE 120 (332)
T COG2255 81 -----K------------ITSGPALEKPG-----------DLA------------AILTNLEEGDVLFIDEIHRLSPAVE 120 (332)
T ss_pred -----E------------ecccccccChh-----------hHH------------HHHhcCCcCCeEEEehhhhcChhHH
Confidence 0 00112221111 111 1111 12356999999999999999
Q ss_pred HHHHHHHHcCceEEeeC-C---eeEEee-cCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHh
Q 006254 242 NLLLNVLTEGVNIVERE-G---ISFKHP-CKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQE 316 (653)
Q Consensus 242 ~~Ll~~l~~g~~~v~r~-G---~s~~~p-~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~ 316 (653)
+.|..+|++-.+-+.-. | .+++.+ ..|.|||+|. .-|.|..+|.|||++...+.. +..++..+|+.+..
T Consensus 121 E~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATT-r~G~lt~PLrdRFGi~~rlef-Y~~~eL~~Iv~r~a---- 194 (332)
T COG2255 121 EVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATT-RAGMLTNPLRDRFGIIQRLEF-YTVEELEEIVKRSA---- 194 (332)
T ss_pred HHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeecc-ccccccchhHHhcCCeeeeec-CCHHHHHHHHHHHH----
Confidence 99999999988655322 1 133333 3699999999 899999999999999999985 78888888877532
Q ss_pred hhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHH
Q 006254 317 RSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLK 396 (653)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~ 396 (653)
.+-++.++++....|+..+.. +.|-+..++|-.+..|...|...|+.+-..
T Consensus 195 -------------------------~~l~i~i~~~~a~eIA~rSRG----TPRIAnRLLrRVRDfa~V~~~~~I~~~ia~ 245 (332)
T COG2255 195 -------------------------KILGIEIDEEAALEIARRSRG----TPRIANRLLRRVRDFAQVKGDGDIDRDIAD 245 (332)
T ss_pred -------------------------HHhCCCCChHHHHHHHHhccC----CcHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 122578999887777655432 589999999999999999999999999999
Q ss_pred HHHHHHcC
Q 006254 397 KAVELVIL 404 (653)
Q Consensus 397 ~A~~lvl~ 404 (653)
+|+.+-..
T Consensus 246 ~aL~~L~V 253 (332)
T COG2255 246 KALKMLDV 253 (332)
T ss_pred HHHHHhCc
Confidence 99875443
No 40
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=99.83 E-value=2.3e-19 Score=203.08 Aligned_cols=269 Identities=20% Similarity=0.202 Sum_probs=200.5
Q ss_pred CCceechHHHHHHHHHhcccCC------------CceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcc
Q 006254 94 LAAVVGQDAIKTALLLGAIDRE------------IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEW 161 (653)
Q Consensus 94 f~~IvGq~~~k~aL~~~av~p~------------~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~ 161 (653)
...|.|++.+|+|+++.++... .-+|||.|.||||||.|.|.+++.+|+--.
T Consensus 285 aPsIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vy---------------- 348 (682)
T COG1241 285 APSIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVY---------------- 348 (682)
T ss_pred cccccCcHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEE----------------
Confidence 4579999999999988776431 135999999999999999999999984111
Q ss_pred cccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHH
Q 006254 162 EDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGIS 241 (653)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~ 241 (653)
. -..+++...|...+. +.-.+|.+..+.|.|-.|++||++|||++.++.+..
T Consensus 349 -------------------------t-sgkgss~~GLTAav~--rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~~dr 400 (682)
T COG1241 349 -------------------------T-SGKGSSAAGLTAAVV--RDKVTGEWVLEAGALVLADGGVCCIDEFDKMNEEDR 400 (682)
T ss_pred -------------------------E-ccccccccCceeEEE--EccCCCeEEEeCCEEEEecCCEEEEEeccCCChHHH
Confidence 1 111222223333221 112246678889999999999999999999999999
Q ss_pred HHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCC------------cccHHHHhhhcccccccCCCCHhhHHHHHH
Q 006254 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG------------VVREHLLDRIAINLSADLPMTFEDRVAAVG 309 (653)
Q Consensus 242 ~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg------------~l~~aLldRf~~~v~l~~p~~~~~r~~I~~ 309 (653)
.+|+.+|+++.+.+...|+....+++..++|+.||..| .|+++|++||++++.+..-++.+.-..|.+
T Consensus 401 ~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~ 480 (682)
T COG1241 401 VAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAE 480 (682)
T ss_pred HHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHH
Confidence 99999999999999999999999999999999999665 377899999999977765445544444444
Q ss_pred HHHHHHhh--hhHH-----hhhhh-hhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcC------------CCCcc
Q 006254 310 IATQFQER--SNEV-----FKMVE-EETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGG------------CQGHR 369 (653)
Q Consensus 310 ~~~~~~~~--~~~~-----~~~~~-~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~------------i~s~R 369 (653)
.+...-.. +... ..... ...+.++..|..||... ...+++++.+.|.++..... ..+.|
T Consensus 481 hil~~h~~~~~~~~~~~~~~~~~~~~~~~~lrkYI~YAR~~v-~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~R 559 (682)
T COG1241 481 HILDKHRGEEPEETISLDGVDEVEERDFELLRKYISYARKNV-TPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITAR 559 (682)
T ss_pred HHHHHHhccccccccccccccccccCcHHHHHHHHHHHhccC-CcccCHHHHHHHHHHHHHhhhccccccccCcccccHH
Confidence 33222110 0000 00000 02456889999999853 14799999999998865543 24689
Q ss_pred hHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHcCCCc
Q 006254 370 AELYAARVAKCLAALEGREKVNVDDLKKAVELVILPRS 407 (653)
Q Consensus 370 ~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~hR~ 407 (653)
.+..++|++.|+|.+.-++.|+.+|+.+|.+++..--.
T Consensus 560 qLEsiiRLaeA~Ak~rLS~~V~~eD~~eAi~lv~~~l~ 597 (682)
T COG1241 560 QLESIIRLAEAHAKMRLSDVVEEEDVDEAIRLVDFSLK 597 (682)
T ss_pred HHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999876443
No 41
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=99.82 E-value=2.7e-19 Score=195.37 Aligned_cols=265 Identities=17% Similarity=0.226 Sum_probs=197.4
Q ss_pred CCceechHHHHHHHHHhcccC------------CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcc
Q 006254 94 LAAVVGQDAIKTALLLGAIDR------------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEW 161 (653)
Q Consensus 94 f~~IvGq~~~k~aL~~~av~p------------~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~ 161 (653)
|..|.|++.+|..+++.++.- +.-+|+|+|.||||||.+.++..+.+|+- .|-|
T Consensus 344 ~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~------vYts-------- 409 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRS------VYTS-------- 409 (764)
T ss_pred CccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcc------eEec--------
Confidence 678999999999998876621 12349999999999999999999999841 1111
Q ss_pred cccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHH
Q 006254 162 EDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGIS 241 (653)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~ 241 (653)
.+ .++...|.-.+ .+.-.+|...++.|.|..|++||..|||+++++...|
T Consensus 410 ------------Gk----------------aSSaAGLTaaV--vkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~dq 459 (764)
T KOG0480|consen 410 ------------GK----------------ASSAAGLTAAV--VKDEESGDFTIEAGALMLADNGICCIDEFDKMDVKDQ 459 (764)
T ss_pred ------------Cc----------------ccccccceEEE--EecCCCCceeeecCcEEEccCceEEechhcccChHhH
Confidence 11 11112222221 2344457888899999999999999999999999999
Q ss_pred HHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCC------------cccHHHHhhhcccccccCCCCHhhHHHHHH
Q 006254 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG------------VVREHLLDRIAINLSADLPMTFEDRVAAVG 309 (653)
Q Consensus 242 ~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg------------~l~~aLldRf~~~v~l~~p~~~~~r~~I~~ 309 (653)
.+|+.+|++..+.+.+.|...+.+++..+||+.||-.| .++++|++||++++.+-.-.+...-..|.+
T Consensus 460 vAihEAMEQQtISIaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~ 539 (764)
T KOG0480|consen 460 VAIHEAMEQQTISIAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIAR 539 (764)
T ss_pred HHHHHHHHhheehheecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHH
Confidence 99999999999999999999999999999999999654 377999999999865542223332233444
Q ss_pred HHHHHHhhhhHHh-hhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhc--------C----CCCcchHHHHHH
Q 006254 310 IATQFQERSNEVF-KMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRG--------G----CQGHRAELYAAR 376 (653)
Q Consensus 310 ~~~~~~~~~~~~~-~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~--------~----i~s~R~~i~llr 376 (653)
.+......-.... ....-..+.++..|..||...| .++.++-+.|.+....+ + ..+.|.+..++|
T Consensus 540 hIld~h~~i~~~~~~~~~~~~e~vrkYi~yAR~~~P--~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIR 617 (764)
T KOG0480|consen 540 HILDLHRGIDDATERVCVYTLEQVRKYIRYARNFKP--KLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIR 617 (764)
T ss_pred HHHHHhccccccccccccccHHHHHHHHHHHHhcCc--cccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHH
Confidence 3333322111111 1112244678999999997777 68888888888765432 1 347899999999
Q ss_pred HHHHHHHHcCCCCccHHHHHHHHHHHcC
Q 006254 377 VAKCLAALEGREKVNVDDLKKAVELVIL 404 (653)
Q Consensus 377 ~Ara~Aal~gr~~Vt~eDv~~A~~lvl~ 404 (653)
++.|+|.++-++.||++|+++|+++.-.
T Consensus 618 LsEA~Ar~~~~devt~~~v~ea~eLlk~ 645 (764)
T KOG0480|consen 618 LSEARARVECRDEVTKEDVEEAVELLKK 645 (764)
T ss_pred HHHHHHhhhhhhhccHHHHHHHHHHHHh
Confidence 9999999999999999999999997654
No 42
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.82 E-value=7.1e-20 Score=181.51 Aligned_cols=217 Identities=25% Similarity=0.325 Sum_probs=157.0
Q ss_pred CCCCCCCceechHHHHHHHHH---hcccC------CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCC
Q 006254 89 RQFFPLAAVVGQDAIKTALLL---GAIDR------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPD 159 (653)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~~---~av~p------~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~ 159 (653)
.+...|++||||+.+|+...+ -+-+| ...+||++||||||||++||+|++..
T Consensus 115 ~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~------------------- 175 (368)
T COG1223 115 ISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA------------------- 175 (368)
T ss_pred hccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc-------------------
Confidence 456789999999999997732 23355 24669999999999999999999965
Q ss_pred cccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCcccccccc---ccccCceEEecccccC
Q 006254 160 EWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLL---AEAHRGVLYIDEINLL 236 (653)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll---~~A~~giL~IDEi~~l 236 (653)
+.||+.+.......+.+|. |..... -+. .++..+|+||||++.+
T Consensus 176 -----------------------kvp~l~vkat~liGehVGd---------gar~Ih-ely~rA~~~aPcivFiDE~DAi 222 (368)
T COG1223 176 -----------------------KVPLLLVKATELIGEHVGD---------GARRIH-ELYERARKAAPCIVFIDELDAI 222 (368)
T ss_pred -----------------------CCceEEechHHHHHHHhhh---------HHHHHH-HHHHHHHhcCCeEEEehhhhhh
Confidence 5788777655444444552 332221 122 2345799999999976
Q ss_pred C------------HHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhH
Q 006254 237 D------------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDR 304 (653)
Q Consensus 237 ~------------~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r 304 (653)
. .+++|+||.-|+ |. .+++| ++.||+|| .+..|++++++||..-|++..| +.++|
T Consensus 223 aLdRryQelRGDVsEiVNALLTelD-gi--~eneG--------VvtIaaTN-~p~~LD~aiRsRFEeEIEF~LP-~~eEr 289 (368)
T COG1223 223 ALDRRYQELRGDVSEIVNALLTELD-GI--KENEG--------VVTIAATN-RPELLDPAIRSRFEEEIEFKLP-NDEER 289 (368)
T ss_pred hhhhhHHHhcccHHHHHHHHHHhcc-Cc--ccCCc--------eEEEeecC-ChhhcCHHHHhhhhheeeeeCC-ChHHH
Confidence 3 267899999887 43 25555 57899999 8889999999999999999976 77888
Q ss_pred HHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHH-HHHHHHHHHHH
Q 006254 305 VAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAEL-YAARVAKCLAA 383 (653)
Q Consensus 305 ~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i-~llr~Ara~Aa 383 (653)
.+|++... ....-.|... +++++.. .+..|.|... .+++.|--.|-
T Consensus 290 ~~ile~y~---------------------------k~~Plpv~~~---~~~~~~~---t~g~SgRdikekvlK~aLh~Ai 336 (368)
T COG1223 290 LEILEYYA---------------------------KKFPLPVDAD---LRYLAAK---TKGMSGRDIKEKVLKTALHRAI 336 (368)
T ss_pred HHHHHHHH---------------------------HhCCCccccC---HHHHHHH---hCCCCchhHHHHHHHHHHHHHH
Confidence 88887421 2222223333 4555443 3444777654 67888888899
Q ss_pred HcCCCCccHHHHHHHHHHHc
Q 006254 384 LEGREKVNVDDLKKAVELVI 403 (653)
Q Consensus 384 l~gr~~Vt~eDv~~A~~lvl 403 (653)
.+|++.|+.+|++.|++.-.
T Consensus 337 ~ed~e~v~~edie~al~k~r 356 (368)
T COG1223 337 AEDREKVEREDIEKALKKER 356 (368)
T ss_pred HhchhhhhHHHHHHHHHhhc
Confidence 99999999999999998733
No 43
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.82 E-value=1.1e-19 Score=190.87 Aligned_cols=218 Identities=21% Similarity=0.240 Sum_probs=155.3
Q ss_pred cccCCCCCCCCceechHHHHH---HHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcc
Q 006254 85 DSYGRQFFPLAAVVGQDAIKT---ALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEW 161 (653)
Q Consensus 85 ~~~~~~~~~f~~IvGq~~~k~---aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~ 161 (653)
...+.+|.+|++||||+++.- .|..++-.....+++|||||||||||+|+.|+...
T Consensus 14 LA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~--------------------- 72 (436)
T COG2256 14 LAERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT--------------------- 72 (436)
T ss_pred hHHHhCCCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh---------------------
Confidence 445667889999999998752 22222223356889999999999999999999976
Q ss_pred cccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHH
Q 006254 162 EDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGIS 241 (653)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~ 241 (653)
+..|..++... .|.-|+...+........ .-.+.|||||||++++...|
T Consensus 73 ---------------------~~~f~~~sAv~-----~gvkdlr~i~e~a~~~~~-----~gr~tiLflDEIHRfnK~QQ 121 (436)
T COG2256 73 ---------------------NAAFEALSAVT-----SGVKDLREIIEEARKNRL-----LGRRTILFLDEIHRFNKAQQ 121 (436)
T ss_pred ---------------------CCceEEecccc-----ccHHHHHHHHHHHHHHHh-----cCCceEEEEehhhhcChhhh
Confidence 46677776543 344444433322211111 11346999999999999999
Q ss_pred HHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCC-cccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhH
Q 006254 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG-VVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNE 320 (653)
Q Consensus 242 ~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg-~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~ 320 (653)
+.||..+++|. ++|||+|..++. ++.++|++|..++ ++. |.+.++...++.++.....
T Consensus 122 D~lLp~vE~G~---------------iilIGATTENPsF~ln~ALlSR~~vf-~lk-~L~~~di~~~l~ra~~~~~---- 180 (436)
T COG2256 122 DALLPHVENGT---------------IILIGATTENPSFELNPALLSRARVF-ELK-PLSSEDIKKLLKRALLDEE---- 180 (436)
T ss_pred hhhhhhhcCCe---------------EEEEeccCCCCCeeecHHHhhhhhee-eee-cCCHHHHHHHHHHHHhhhh----
Confidence 99999999997 579999997774 7999999999888 676 7888888777776433321
Q ss_pred HhhhhhhhhhHHHHHHHHHHhhh-cccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHH
Q 006254 321 VFKMVEEETDLAKTQIILAREYL-KDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (653)
Q Consensus 321 ~~~~~~~~~~~l~~~i~~ar~~l-~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~ 399 (653)
+... ..+.++++++++|+.++.. ..|..+++++.+...+.-.. ..+.+++++.+
T Consensus 181 -------------------rgl~~~~~~i~~~a~~~l~~~s~G----D~R~aLN~LE~~~~~~~~~~--~~~~~~l~~~l 235 (436)
T COG2256 181 -------------------RGLGGQIIVLDEEALDYLVRLSNG----DARRALNLLELAALSAEPDE--VLILELLEEIL 235 (436)
T ss_pred -------------------cCCCcccccCCHHHHHHHHHhcCc----hHHHHHHHHHHHHHhcCCCc--ccCHHHHHHHH
Confidence 1111 2356899999999887633 37999999988876664333 33477777666
Q ss_pred H
Q 006254 400 E 400 (653)
Q Consensus 400 ~ 400 (653)
.
T Consensus 236 ~ 236 (436)
T COG2256 236 Q 236 (436)
T ss_pred h
Confidence 5
No 44
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.9e-19 Score=186.33 Aligned_cols=223 Identities=22% Similarity=0.271 Sum_probs=163.2
Q ss_pred CCCCCCCCceechHHHHHHHHHhcccCC-------------CceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCC
Q 006254 88 GRQFFPLAAVVGQDAIKTALLLGAIDRE-------------IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANAD 154 (653)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~~~av~p~-------------~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~ 154 (653)
+.+..++++|-|.+.-++.|..+...|- ..|||||||||||||+||||+|+..
T Consensus 144 e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T-------------- 209 (406)
T COG1222 144 EKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT-------------- 209 (406)
T ss_pred cCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc--------------
Confidence 3567889999999988887754443331 3679999999999999999999954
Q ss_pred CCCCCcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccc---cCceEEec
Q 006254 155 PTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYID 231 (653)
Q Consensus 155 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~ID 231 (653)
++.|+.+..+....+++|. |.+ ....+|..| ..+|+|||
T Consensus 210 ----------------------------~AtFIrvvgSElVqKYiGE---------GaR-lVRelF~lArekaPsIIFiD 251 (406)
T COG1222 210 ----------------------------DATFIRVVGSELVQKYIGE---------GAR-LVRELFELAREKAPSIIFID 251 (406)
T ss_pred ----------------------------CceEEEeccHHHHHHHhcc---------chH-HHHHHHHHHhhcCCeEEEEe
Confidence 6788888777777777773 543 233455555 46899999
Q ss_pred ccccC-----------CHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHh--hhcccccccCC
Q 006254 232 EINLL-----------DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLP 298 (653)
Q Consensus 232 Ei~~l-----------~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLld--Rf~~~v~l~~p 298 (653)
||+.. +.++|..+++++.+-. |.. -..++-+|++|| ....|+|+|++ ||+..|+++.
T Consensus 252 EIDAIg~kR~d~~t~gDrEVQRTmleLL~qlD------GFD--~~~nvKVI~ATN-R~D~LDPALLRPGR~DRkIEfpl- 321 (406)
T COG1222 252 EIDAIGAKRFDSGTSGDREVQRTMLELLNQLD------GFD--PRGNVKVIMATN-RPDILDPALLRPGRFDRKIEFPL- 321 (406)
T ss_pred chhhhhcccccCCCCchHHHHHHHHHHHHhcc------CCC--CCCCeEEEEecC-CccccChhhcCCCcccceeecCC-
Confidence 99965 4589999999987632 221 123678999999 88889999998 9999999995
Q ss_pred CCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHH-HHHHHHHHHhcCCCCcchHH-HHHH
Q 006254 299 MTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQ-LKYLVMEALRGGCQGHRAEL-YAAR 376 (653)
Q Consensus 299 ~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~-l~~l~~~~~~~~i~s~R~~i-~llr 376 (653)
++.+.|.+|++.... ...+.+++ ++.|+..+...++ +++ .++.
T Consensus 322 Pd~~gR~~Il~IHtr-------------------------------kM~l~~dvd~e~la~~~~g~sG----Adlkaict 366 (406)
T COG1222 322 PDEEGRAEILKIHTR-------------------------------KMNLADDVDLELLARLTEGFSG----ADLKAICT 366 (406)
T ss_pred CCHHHHHHHHHHHhh-------------------------------hccCccCcCHHHHHHhcCCCch----HHHHHHHH
Confidence 599999999874211 11222222 5566666655544 333 3445
Q ss_pred HHHHHHHHcCCCCccHHHHHHHHHHHcCCCc
Q 006254 377 VAKCLAALEGREKVNVDDLKKAVELVILPRS 407 (653)
Q Consensus 377 ~Ara~Aal~gr~~Vt~eDv~~A~~lvl~hR~ 407 (653)
-|.-+|.=++|..||.+|+.+|++-|+....
T Consensus 367 EAGm~AiR~~R~~Vt~~DF~~Av~KV~~~~~ 397 (406)
T COG1222 367 EAGMFAIRERRDEVTMEDFLKAVEKVVKKKK 397 (406)
T ss_pred HHhHHHHHhccCeecHHHHHHHHHHHHhccc
Confidence 5666677788999999999999999987553
No 45
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.81 E-value=3.5e-19 Score=198.56 Aligned_cols=236 Identities=23% Similarity=0.292 Sum_probs=181.8
Q ss_pred CCCceechHHHHHHH--HHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccccccccc
Q 006254 93 PLAAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAE 170 (653)
Q Consensus 93 ~f~~IvGq~~~k~aL--~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~ 170 (653)
.+..++|.+..+..+ .+..+.....+|||.|++||||+++|+++|.....
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~---------------------------- 192 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRR---------------------------- 192 (457)
T ss_pred cccceecccHHHhHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHhCCC----------------------------
Confidence 456789988766666 23344456788999999999999999999997652
Q ss_pred ccccccccccccCCCeEeCCCCCc-----ccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHH
Q 006254 171 YDTAGNLKTQIARSPFVQIPLGVT-----EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLL 245 (653)
Q Consensus 171 ~~~~~~~~~~~~~~~fv~l~~~~~-----~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll 245 (653)
...+|+.+.+... ++.+||+. ++.++|.....+|.+..|++|+||||||+.|+..+|..|+
T Consensus 193 -----------~~~~~~~i~c~~~~~~~~~~~lfg~~---~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~~~~q~~L~ 258 (457)
T PRK11361 193 -----------AKGPFIKVNCAALPESLLESELFGHE---KGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLL 258 (457)
T ss_pred -----------CCCCeEEEECCCCCHHHHHHHhcCCC---CCCCCCCCCCCCCceEECCCCEEEEechhhCCHHHHHHHH
Confidence 2457776665544 45678863 5666777777899999999999999999999999999999
Q ss_pred HHHHcCceEEeeCCeeEEeecCcEEEEEecCC------CCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhh
Q 006254 246 NVLTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSN 319 (653)
Q Consensus 246 ~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~------eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~ 319 (653)
.+++++. +.+.|....++.++++|+|+|.+ +|.++++|++||... .|..|+.++++.||..++..|.....
T Consensus 259 ~~l~~~~--~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~~l~~~-~i~~ppLreR~~di~~l~~~~l~~~~ 335 (457)
T PRK11361 259 RILQERE--FERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNVI-HLILPPLRDRREDISLLANHFLQKFS 335 (457)
T ss_pred HHHhcCc--EEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhccc-eecCCChhhchhhHHHHHHHHHHHHH
Confidence 9999987 66778888888999999999974 578999999999875 77778999999999888877744211
Q ss_pred HHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHH
Q 006254 320 EVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKA 398 (653)
Q Consensus 320 ~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A 398 (653)
. +...+.+.+++++++.|..+.|++|+ |...++++.|- .......|+.+|+...
T Consensus 336 ------------------~-~~~~~~~~~~~~a~~~L~~~~wpgNv---~eL~~~~~~~~---~~~~~~~i~~~~l~~~ 389 (457)
T PRK11361 336 ------------------S-ENQRDIIDIDPMAMSLLTAWSWPGNI---RELSNVIERAV---VMNSGPIIFSEDLPPQ 389 (457)
T ss_pred ------------------H-HcCCCCCCcCHHHHHHHHcCCCCCcH---HHHHHHHHHHH---HhCCCCcccHHHChHh
Confidence 0 11122357999999999999999987 55555554432 3344557888887543
No 46
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.4e-19 Score=194.03 Aligned_cols=219 Identities=21% Similarity=0.227 Sum_probs=162.3
Q ss_pred CCCCCCCCceechHHHHHHHHH---hcccCC---------CceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCC
Q 006254 88 GRQFFPLAAVVGQDAIKTALLL---GAIDRE---------IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADP 155 (653)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~~---~av~p~---------~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p 155 (653)
+...+.|++|.|-|++|+.|.. -+-+|. ..||||+||||||||+|||++|.+.
T Consensus 297 ~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA--------------- 361 (752)
T KOG0734|consen 297 QMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA--------------- 361 (752)
T ss_pred hhcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc---------------
Confidence 3456789999999999999932 133552 3569999999999999999999864
Q ss_pred CCCCcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccc---cCceEEecc
Q 006254 156 TCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDE 232 (653)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~IDE 232 (653)
+.||+....+..++.++|. |+++.+ .+|..| .++||||||
T Consensus 362 ---------------------------~VPFF~~sGSEFdEm~VGv---------GArRVR-dLF~aAk~~APcIIFIDE 404 (752)
T KOG0734|consen 362 ---------------------------GVPFFYASGSEFDEMFVGV---------GARRVR-DLFAAAKARAPCIIFIDE 404 (752)
T ss_pred ---------------------------CCCeEeccccchhhhhhcc---------cHHHHH-HHHHHHHhcCCeEEEEec
Confidence 6899999999999999994 555443 466655 468999999
Q ss_pred cccCC-----------HHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHh--hhcccccccCCC
Q 006254 233 INLLD-----------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPM 299 (653)
Q Consensus 233 i~~l~-----------~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLld--Rf~~~v~l~~p~ 299 (653)
|+... ..++|.||.-|+--. ....+++||+|| .+..|+++|.+ ||+.+|.++.|
T Consensus 405 iDavG~kR~~~~~~y~kqTlNQLLvEmDGF~-----------qNeGiIvigATN-fpe~LD~AL~RPGRFD~~v~Vp~P- 471 (752)
T KOG0734|consen 405 IDAVGGKRNPSDQHYAKQTLNQLLVEMDGFK-----------QNEGIIVIGATN-FPEALDKALTRPGRFDRHVTVPLP- 471 (752)
T ss_pred hhhhcccCCccHHHHHHHHHHHHHHHhcCcC-----------cCCceEEEeccC-ChhhhhHHhcCCCccceeEecCCC-
Confidence 98652 346778887776321 112579999999 88889999997 99999999965
Q ss_pred CHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 006254 300 TFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAK 379 (653)
Q Consensus 300 ~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ar 379 (653)
|...|.+|+++.+. .++-.-.++..+ | +...-..+--..-+++..|.
T Consensus 472 Dv~GR~eIL~~yl~---------------------------ki~~~~~VD~~i---i---ARGT~GFsGAdLaNlVNqAA 518 (752)
T KOG0734|consen 472 DVRGRTEILKLYLS---------------------------KIPLDEDVDPKI---I---ARGTPGFSGADLANLVNQAA 518 (752)
T ss_pred CcccHHHHHHHHHh---------------------------cCCcccCCCHhH---h---ccCCCCCchHHHHHHHHHHH
Confidence 99999999885322 112122334333 2 22222233345667888999
Q ss_pred HHHHHcCCCCccHHHHHHHHHHHcC
Q 006254 380 CLAALEGREKVNVDDLKKAVELVIL 404 (653)
Q Consensus 380 a~Aal~gr~~Vt~eDv~~A~~lvl~ 404 (653)
-.|+.+|...|+..|++.|-..+|-
T Consensus 519 lkAa~dga~~VtM~~LE~akDrIlM 543 (752)
T KOG0734|consen 519 LKAAVDGAEMVTMKHLEFAKDRILM 543 (752)
T ss_pred HHHHhcCcccccHHHHhhhhhheee
Confidence 9999999999999999999775553
No 47
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.78 E-value=3.6e-18 Score=194.79 Aligned_cols=285 Identities=22% Similarity=0.285 Sum_probs=189.5
Q ss_pred cCCCCCCCCceechHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcc-cccc
Q 006254 87 YGRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEW-EDGL 165 (653)
Q Consensus 87 ~~~~~~~f~~IvGq~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~-~~~~ 165 (653)
...++..|++|+||++++..|..++... .+++|+||||||||+++++++..++..... ...|--||.+...+ ...+
T Consensus 23 ~~~~~~~~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~~~~~~-~~~~~~np~~~~~~~~~~v 99 (637)
T PRK13765 23 IEVPERLIDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLPKEELQ-DILVYPNPEDPNNPKIRTV 99 (637)
T ss_pred cccCcccHHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcChHhHH-HheEeeCCCcchHHHHHHH
Confidence 4456788999999999999998766643 589999999999999999999998743211 11122224332221 0000
Q ss_pred c----ccc---------------------------cc---cc-----------------------ccc-------ccccc
Q 006254 166 D----EKA---------------------------EY---DT-----------------------AGN-------LKTQI 181 (653)
Q Consensus 166 ~----~~~---------------------------~~---~~-----------------------~~~-------~~~~~ 181 (653)
. ..+ .+ .. .+. -+..+
T Consensus 100 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nllv~ns~~ 179 (637)
T PRK13765 100 PAGKGKQIVEAHKEEARKRNQMRNMLMMIIIAGIIGYAFIYAGQILWGIIAAGLIYMALRYFRPKEDAMVPKLLVNNADK 179 (637)
T ss_pred HHhcCHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcCceEEEEEEEeCCCC
Confidence 0 000 00 00 000 01134
Q ss_pred cCCCeEeCCCCCcccceeeecchh----hhhccCCcc-ccccccccccCceEEecccccCCHHHHHHHHHHHHcCceEEe
Q 006254 182 ARSPFVQIPLGVTEDRLIGSVDVE----ESVKTGTTV-FQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVE 256 (653)
Q Consensus 182 ~~~~fv~l~~~~~~~~l~G~~d~~----~~~~~g~~~-~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~l~~g~~~v~ 256 (653)
...|||..+.. +...|||++.-. .+++++... .++|.|.+||+|+|||||++.|++..|..|+.+|+++.+.+
T Consensus 180 ~~aPvi~~~~p-~~~~LfG~i~~~~~~~Gg~~t~~~~~i~~G~L~kAnGGtL~LDei~~L~~~~q~~Llr~L~~~~i~i- 257 (637)
T PRK13765 180 KTAPFVDATGA-HAGALLGDVRHDPFQSGGLETPAHDRVEAGAIHKAHKGVLFIDEINTLDLESQQSLLTAMQEKKFPI- 257 (637)
T ss_pred CCCCEEEeCCC-CHHHcCCccccccccccccccCccccCCCCceeECCCcEEEEeChHhCCHHHHHHHHHHHHhCCEEe-
Confidence 56888876543 477899987532 145444443 49999999999999999999999999999999999999554
Q ss_pred eCCe----------eEEeecCcEEEEEecCCC-CcccHHHHhhhc---ccccccCCCCHhhHHHHHHHHHHHHhhhhHHh
Q 006254 257 REGI----------SFKHPCKPLLIATYNPEE-GVVREHLLDRIA---INLSADLPMTFEDRVAAVGIATQFQERSNEVF 322 (653)
Q Consensus 257 r~G~----------s~~~p~~~~lIattNp~e-g~l~~aLldRf~---~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~ 322 (653)
.|. ....|++|.+|+++|++. ..++++|++||. +.+++.. . ..++.+....|..
T Consensus 258 -~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll~~~dpdL~~rfk~~~v~v~f~~--~---~~d~~e~~~~~~~------ 325 (637)
T PRK13765 258 -TGQSERSSGAMVRTEPVPCDFIMVAAGNLDALENMHPALRSRIKGYGYEVYMRD--T---MEDTPENRRKLVR------ 325 (637)
T ss_pred -cccccccccccCCCcceeeeeEEEEecCcCHHHhhhHHHHHHhccCeEEEEccc--c---cCCCHHHHHHHHH------
Confidence 333 455788999999999864 567899999997 3444331 1 1112222222211
Q ss_pred hhhhhhhhHHHHHHHHH-HhhhcccCCCHHHHHHHHHHHHh-cCCCC-----cchHHHHHHHHHHHHHHcCCCCccHHHH
Q 006254 323 KMVEEETDLAKTQIILA-REYLKDVAIGREQLKYLVMEALR-GGCQG-----HRAELYAARVAKCLAALEGREKVNVDDL 395 (653)
Q Consensus 323 ~~~~~~~~~l~~~i~~a-r~~l~~v~is~~~l~~l~~~~~~-~~i~s-----~R~~i~llr~Ara~Aal~gr~~Vt~eDv 395 (653)
.+... ...-....++++++..|++++.+ .|..+ .|....++|.|..+|..++++.|+.+||
T Consensus 326 ------------~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v 393 (637)
T PRK13765 326 ------------FVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHV 393 (637)
T ss_pred ------------HHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHHHHHHHHhhccceecHHHH
Confidence 11111 11101237999999999987664 34422 5677789999999999999999999999
Q ss_pred HHHHH
Q 006254 396 KKAVE 400 (653)
Q Consensus 396 ~~A~~ 400 (653)
.+|..
T Consensus 394 ~~a~~ 398 (637)
T PRK13765 394 LEAKK 398 (637)
T ss_pred HHHHH
Confidence 99874
No 48
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.78 E-value=3.2e-18 Score=196.38 Aligned_cols=244 Identities=24% Similarity=0.252 Sum_probs=169.1
Q ss_pred CCCCCCCceechHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccccccc
Q 006254 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (653)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~ 168 (653)
.++.+|++|+||+..++++...+..+...+|+|+||+||||||+|+.++....... +.++.
T Consensus 148 ~rp~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~---~~~~~---------------- 208 (615)
T TIGR02903 148 LRPRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLK---HTPFA---------------- 208 (615)
T ss_pred cCcCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhcc---CCccc----------------
Confidence 46789999999999999886655667778899999999999999999998764210 00000
Q ss_pred ccccccccccccccCCCeEeCCCCCc-------ccceeeecch------hh-hhccCCccccccccccccCceEEecccc
Q 006254 169 AEYDTAGNLKTQIARSPFVQIPLGVT-------EDRLIGSVDV------EE-SVKTGTTVFQPGLLAEAHRGVLYIDEIN 234 (653)
Q Consensus 169 ~~~~~~~~~~~~~~~~~fv~l~~~~~-------~~~l~G~~d~------~~-~~~~g~~~~~~Gll~~A~~giL~IDEi~ 234 (653)
.+.+|+.+.+... ...++|.+.- .+ ..+.|......|++..+++|+|||||++
T Consensus 209 -------------~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~ 275 (615)
T TIGR02903 209 -------------EDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIG 275 (615)
T ss_pred -------------CCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccc
Confidence 1334555443221 1123443210 00 1123445567899999999999999999
Q ss_pred cCCHHHHHHHHHHHHcCceEEeeCCe---------------eEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCC
Q 006254 235 LLDEGISNLLLNVLTEGVNIVEREGI---------------SFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPM 299 (653)
Q Consensus 235 ~l~~~~~~~Ll~~l~~g~~~v~r~G~---------------s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~ 299 (653)
.|+...|+.|+.+++++.+.+..+-. ....+.+|++|++|+..+..+.++|++||..+ .+. |+
T Consensus 276 ~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i-~~~-pl 353 (615)
T TIGR02903 276 ELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEV-FFE-PL 353 (615)
T ss_pred cCCHHHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEE-EeC-CC
Confidence 99999999999999998855442210 11245678999988777788999999999865 565 67
Q ss_pred CHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 006254 300 TFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAK 379 (653)
Q Consensus 300 ~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ar 379 (653)
+.++..+|++... .. ..+.+++++++.|..++|.+ |..++++..+.
T Consensus 354 s~edi~~Il~~~a---------------------------~~--~~v~ls~eal~~L~~ys~~g-----Rraln~L~~~~ 399 (615)
T TIGR02903 354 TPEDIALIVLNAA---------------------------EK--INVHLAAGVEELIARYTIEG-----RKAVNILADVY 399 (615)
T ss_pred CHHHHHHHHHHHH---------------------------HH--cCCCCCHHHHHHHHHCCCcH-----HHHHHHHHHHH
Confidence 7777766665311 00 13568999999999987742 77788777665
Q ss_pred HHHHHc--------CCCCccHHHHHHHHH
Q 006254 380 CLAALE--------GREKVNVDDLKKAVE 400 (653)
Q Consensus 380 a~Aal~--------gr~~Vt~eDv~~A~~ 400 (653)
.++... +...|+.+||++++.
T Consensus 400 ~~~~~~~~~~~~~~~~~~I~~edv~~~l~ 428 (615)
T TIGR02903 400 GYALYRAAEAGKENDKVTITQDDVYEVIQ 428 (615)
T ss_pred HHHHHHHHHhccCCCCeeECHHHHHHHhC
Confidence 554322 233799999999886
No 49
>PRK15115 response regulator GlrR; Provisional
Probab=99.78 E-value=2.5e-18 Score=191.19 Aligned_cols=232 Identities=23% Similarity=0.315 Sum_probs=176.6
Q ss_pred CceechHHHHHHH--HHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccccccccccc
Q 006254 95 AAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYD 172 (653)
Q Consensus 95 ~~IvGq~~~k~aL--~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~~ 172 (653)
..++|.+..++.+ ....+.....+|+|.|++||||+++|+++|...++
T Consensus 134 ~~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r------------------------------ 183 (444)
T PRK15115 134 EAIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPR------------------------------ 183 (444)
T ss_pred hcccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhcCC------------------------------
Confidence 3577877655444 22233445678999999999999999999998752
Q ss_pred ccccccccccCCCeEeCCCCCc-----ccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHHHH
Q 006254 173 TAGNLKTQIARSPFVQIPLGVT-----EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNV 247 (653)
Q Consensus 173 ~~~~~~~~~~~~~fv~l~~~~~-----~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~ 247 (653)
.+.+|+.+.+... ++.+||+. ++.++|......|++..+++|+||||||+.|+...|..|+.+
T Consensus 184 ---------~~~~f~~i~c~~~~~~~~~~~lfg~~---~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~L~~~ 251 (444)
T PRK15115 184 ---------ASKPFIAINCGALPEQLLESELFGHA---RGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRV 251 (444)
T ss_pred ---------CCCCeEEEeCCCCCHHHHHHHhcCCC---cCCCCCCccCCCCcEEECCCCEEEEEccccCCHHHHHHHHHH
Confidence 2567777765544 34567753 466677777889999999999999999999999999999999
Q ss_pred HHcCceEEeeCCeeEEeecCcEEEEEecCC------CCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHH
Q 006254 248 LTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEV 321 (653)
Q Consensus 248 l~~g~~~v~r~G~s~~~p~~~~lIattNp~------eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~ 321 (653)
++++. +.+.|.+...+.++++|+|++.+ .|.+++.|++||... .|..|+.++++.||..++.+|....
T Consensus 252 l~~~~--~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l~~~-~i~lPpLr~R~eDi~~l~~~~l~~~--- 325 (444)
T PRK15115 252 LQERK--VRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRLNVV-SLKIPALAERTEDIPLLANHLLRQA--- 325 (444)
T ss_pred HhhCC--EEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHHHHhhcee-eecCCChHhccccHHHHHHHHHHHH---
Confidence 99998 56778877788899999999963 468999999999886 7788889999999988887775421
Q ss_pred hhhhhhhhhHHHHHHHHHHhh-hcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHH
Q 006254 322 FKMVEEETDLAKTQIILAREY-LKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKK 397 (653)
Q Consensus 322 ~~~~~~~~~~l~~~i~~ar~~-l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~ 397 (653)
++.. .....+++++++.|..|.|.+|+ |...++++.|- .+.....|+.+|+..
T Consensus 326 -----------------~~~~~~~~~~~~~~a~~~L~~~~WpgNv---reL~~~i~~~~---~~~~~~~i~~~~l~~ 379 (444)
T PRK15115 326 -----------------AERHKPFVRAFSTDAMKRLMTASWPGNV---RQLVNVIEQCV---ALTSSPVISDALVEQ 379 (444)
T ss_pred -----------------HHHhCCCCCCcCHHHHHHHHhCCCCChH---HHHHHHHHHHH---HhCCCCccChhhhhh
Confidence 1111 12246999999999999999987 55556654433 234455788887754
No 50
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=99.78 E-value=2.6e-18 Score=183.15 Aligned_cols=264 Identities=23% Similarity=0.288 Sum_probs=193.2
Q ss_pred CceechHHHHHHHHHhcccC---C---------CceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccc
Q 006254 95 AAVVGQDAIKTALLLGAIDR---E---------IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWE 162 (653)
Q Consensus 95 ~~IvGq~~~k~aL~~~av~p---~---------~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~ 162 (653)
-+|.|++++|++|++.+|.- . .-+|+|.|.||++||.|.+.|.++.|+-
T Consensus 342 PEIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRg------------------- 402 (721)
T KOG0482|consen 342 PEIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRG------------------- 402 (721)
T ss_pred hhhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCccc-------------------
Confidence 37999999999998877732 1 1239999999999999999999988731
Q ss_pred ccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHH
Q 006254 163 DGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISN 242 (653)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~ 242 (653)
.||... ...=|-+.....-|-+ +|+..++-|.|..|++||.+|||++++++....
T Consensus 403 -------vYTTGr-------GSSGVGLTAAVmkDpv-----------TgEM~LEGGALVLAD~GICCIDEfDKM~e~DRt 457 (721)
T KOG0482|consen 403 -------VYTTGR-------GSSGVGLTAAVMKDPV-----------TGEMVLEGGALVLADGGICCIDEFDKMDESDRT 457 (721)
T ss_pred -------ceecCC-------CCCccccchhhhcCCC-----------CCeeEeccceEEEccCceEeehhhhhhhhhhhH
Confidence 111110 1111112222222222 455667778999999999999999999999999
Q ss_pred HHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCC------------cccHHHHhhhcccccccCCCCHhhHHHHHHH
Q 006254 243 LLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG------------VVREHLLDRIAINLSADLPMTFEDRVAAVGI 310 (653)
Q Consensus 243 ~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg------------~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~ 310 (653)
++..+|++..+.|...|+..+..++..++|+.||.-| .|+.+||+||++..-+...++++.-..+.+.
T Consensus 458 AIHEVMEQQTISIaKAGI~TtLNAR~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~H 537 (721)
T KOG0482|consen 458 AIHEVMEQQTISIAKAGINTTLNARTSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQH 537 (721)
T ss_pred HHHHHHHhhhhhhhhhccccchhhhHHhhhhcCccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHH
Confidence 9999999999999999999999999999999999543 4889999999998655534444443333332
Q ss_pred HH---HHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHh----------cCCCCcchHHHHHHH
Q 006254 311 AT---QFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALR----------GGCQGHRAELYAARV 377 (653)
Q Consensus 311 ~~---~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~----------~~i~s~R~~i~llr~ 377 (653)
+. ...+.|..-++. -....++..|..++...| .++++.-+++.....+ ....+.|-.+.++|+
T Consensus 538 iTyVH~H~~qp~~~fep--l~~~~mR~yI~~ak~~~P--~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRl 613 (721)
T KOG0482|consen 538 ITYVHQHEEQPPLDFEP--LDPNLMRRYISLAKRKNP--VVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRL 613 (721)
T ss_pred hHhhhccCCCCCccCCC--CCHHHHHHHHHHHhhcCC--CCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHH
Confidence 22 122222211111 223567888999988877 6777777777765322 235689999999999
Q ss_pred HHHHHHHcCCCCccHHHHHHHHHHHcCCC
Q 006254 378 AKCLAALEGREKVNVDDLKKAVELVILPR 406 (653)
Q Consensus 378 Ara~Aal~gr~~Vt~eDv~~A~~lvl~hR 406 (653)
+.|+|.|.-.+.|..+||.+|++|+--.+
T Consensus 614 s~AlarLRls~~V~~~DV~EALRLme~sK 642 (721)
T KOG0482|consen 614 STALARLRLSDSVEEDDVNEALRLMEMSK 642 (721)
T ss_pred HHHHHHhhhccccchhhHHHHHHHHHhhh
Confidence 99999999999999999999999875544
No 51
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.78 E-value=3.7e-18 Score=190.75 Aligned_cols=235 Identities=26% Similarity=0.379 Sum_probs=179.8
Q ss_pred CCceechHHHHHHH--HHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccccc
Q 006254 94 LAAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEY 171 (653)
Q Consensus 94 f~~IvGq~~~k~aL--~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~ 171 (653)
+..++|.+.....+ .+..+.....+++|.|++||||+++|+++|...+.
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~----------------------------- 183 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPR----------------------------- 183 (463)
T ss_pred ccceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCCC-----------------------------
Confidence 45689988776666 23334456678999999999999999999998752
Q ss_pred cccccccccccCCCeEeCCCCCc-----ccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHHH
Q 006254 172 DTAGNLKTQIARSPFVQIPLGVT-----EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLN 246 (653)
Q Consensus 172 ~~~~~~~~~~~~~~fv~l~~~~~-----~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~ 246 (653)
...||+.+++... ++.+||+ +++.++|......|.+..|++|+||||||+.|+..+|..|++
T Consensus 184 ----------~~~~~~~~~c~~~~~~~~~~~lfg~---~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~ 250 (463)
T TIGR01818 184 ----------ANGPFIALNMAAIPKDLIESELFGH---EKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLR 250 (463)
T ss_pred ----------CCCCeEEEeCCCCCHHHHHHHhcCC---CCCCCCCcccCCCCcEEECCCCeEEEEchhhCCHHHHHHHHH
Confidence 3567777766554 4467785 356667776677899999999999999999999999999999
Q ss_pred HHHcCceEEeeCCeeEEeecCcEEEEEecCC------CCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhH
Q 006254 247 VLTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNE 320 (653)
Q Consensus 247 ~l~~g~~~v~r~G~s~~~p~~~~lIattNp~------eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~ 320 (653)
+++++. +.+.|.....+.++.+|+++|.+ .+.++++|++|+... .+..|+..+++.||..++.+|....
T Consensus 251 ~l~~~~--~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~rl~~~-~i~lPpLr~R~~Di~~l~~~~l~~~-- 325 (463)
T TIGR01818 251 VLADGE--FYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFHRLNVI-RIHLPPLRERREDIPRLARHFLALA-- 325 (463)
T ss_pred HHhcCc--EEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHHHhCcc-eecCCCcccchhhHHHHHHHHHHHH--
Confidence 999988 66777777777789999999964 478999999999875 6666889999999999888875421
Q ss_pred HhhhhhhhhhHHHHHHHHHHhh-hcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHH
Q 006254 321 VFKMVEEETDLAKTQIILAREY-LKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (653)
Q Consensus 321 ~~~~~~~~~~~l~~~i~~ar~~-l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~ 399 (653)
+... .....+++++++.|..+.|.+|+ |...++++.+- .+.....|+.+|+...+
T Consensus 326 ------------------~~~~~~~~~~~~~~a~~~L~~~~wpgNv---reL~~~~~~~~---~~~~~~~i~~~~l~~~~ 381 (463)
T TIGR01818 326 ------------------ARELDVEPKLLDPEALERLKQLRWPGNV---RQLENLCRWLT---VMASGDEVLVSDLPAEL 381 (463)
T ss_pred ------------------HHHhCCCCCCcCHHHHHHHHhCCCCChH---HHHHHHHHHHH---HhCCCCcccHHhchHHH
Confidence 1111 22357999999999999999987 55555554433 33444589999986544
No 52
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.1e-18 Score=192.55 Aligned_cols=223 Identities=17% Similarity=0.180 Sum_probs=164.1
Q ss_pred cccCCCCCCCCceechHHHHHHHHHhcccCC-------------CceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccc
Q 006254 85 DSYGRQFFPLAAVVGQDAIKTALLLGAIDRE-------------IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIA 151 (653)
Q Consensus 85 ~~~~~~~~~f~~IvGq~~~k~aL~~~av~p~-------------~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~ 151 (653)
+.+..+...|++|-|++++|+.|..+...|. ..||||+||||||||++||+|++..
T Consensus 424 ~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~----------- 492 (693)
T KOG0730|consen 424 ILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA----------- 492 (693)
T ss_pred eeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh-----------
Confidence 3356778999999999999999976666553 3569999999999999999999975
Q ss_pred cCCCCCCCcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEec
Q 006254 152 NADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYID 231 (653)
Q Consensus 152 nc~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~ID 231 (653)
.++|+.++.....++|+|. -|+.++......+ .+...|||+|
T Consensus 493 -------------------------------~~nFlsvkgpEL~sk~vGe--SEr~ir~iF~kAR-----~~aP~IiFfD 534 (693)
T KOG0730|consen 493 -------------------------------GMNFLSVKGPELFSKYVGE--SERAIREVFRKAR-----QVAPCIIFFD 534 (693)
T ss_pred -------------------------------cCCeeeccCHHHHHHhcCc--hHHHHHHHHHHHh-----hcCCeEEehh
Confidence 5789999988889999994 3455543322111 1235799999
Q ss_pred ccccC-----------CHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHh--hhcccccccCC
Q 006254 232 EINLL-----------DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLP 298 (653)
Q Consensus 232 Ei~~l-----------~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLld--Rf~~~v~l~~p 298 (653)
||+.+ .+.+++.||..|+-.. . ..+++|||+|| .+..++++|++ ||+..|+|+.
T Consensus 535 EiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e---------~--~k~V~ViAATN-Rpd~ID~ALlRPGRlD~iiyVpl- 601 (693)
T KOG0730|consen 535 EIDALAGSRGGSSSGVTDRVLSQLLTEMDGLE---------A--LKNVLVIAATN-RPDMIDPALLRPGRLDRIIYVPL- 601 (693)
T ss_pred hHHhHhhccCCCccchHHHHHHHHHHHccccc---------c--cCcEEEEeccC-ChhhcCHHHcCCcccceeEeecC-
Confidence 99876 3457788888887332 1 13689999999 88899999999 9999999995
Q ss_pred CCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHH-HHHHHHHHHHhcCCCCcchHHHHHHH
Q 006254 299 MTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGRE-QLKYLVMEALRGGCQGHRAELYAARV 377 (653)
Q Consensus 299 ~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~-~l~~l~~~~~~~~i~s~R~~i~llr~ 377 (653)
+|.+.|.+|++.. .....++++ -++.|++... ..|-+....+.+-
T Consensus 602 PD~~aR~~Ilk~~-------------------------------~kkmp~~~~vdl~~La~~T~---g~SGAel~~lCq~ 647 (693)
T KOG0730|consen 602 PDLEARLEILKQC-------------------------------AKKMPFSEDVDLEELAQATE---GYSGAEIVAVCQE 647 (693)
T ss_pred ccHHHHHHHHHHH-------------------------------HhcCCCCccccHHHHHHHhc---cCChHHHHHHHHH
Confidence 5999999998732 223445555 3444544433 3355666667777
Q ss_pred HHHHHHHcC--CCCccHHHHHHHHHHHc
Q 006254 378 AKCLAALEG--REKVNVDDLKKAVELVI 403 (653)
Q Consensus 378 Ara~Aal~g--r~~Vt~eDv~~A~~lvl 403 (653)
|..+|.-+. .+.|+.+|+.+|++.+-
T Consensus 648 A~~~a~~e~i~a~~i~~~hf~~al~~~r 675 (693)
T KOG0730|consen 648 AALLALRESIEATEITWQHFEEALKAVR 675 (693)
T ss_pred HHHHHHHHhcccccccHHHHHHHHHhhc
Confidence 766665432 67899999999997553
No 53
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=99.77 E-value=7.8e-19 Score=194.06 Aligned_cols=221 Identities=28% Similarity=0.308 Sum_probs=171.0
Q ss_pred echHHHHHHH--HHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccccccccc
Q 006254 98 VGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAG 175 (653)
Q Consensus 98 vGq~~~k~aL--~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~~~~~ 175 (653)
.+.+.-.+++ .+..+.....+|||.|++||||..++|+||+.+.
T Consensus 316 ~~~d~s~a~l~rk~~rv~~~~~pvll~GEtGtGKe~laraiH~~s~---------------------------------- 361 (606)
T COG3284 316 PLLDPSRATLLRKAERVAATDLPVLLQGETGTGKEVLARAIHQNSE---------------------------------- 361 (606)
T ss_pred cccCHHHHHHHHHHHHHhhcCCCeEecCCcchhHHHHHHHHHhccc----------------------------------
Confidence 4555555555 3444555788999999999999999999999764
Q ss_pred cccccccCCCeEeC-----CCCCcccceeeecchhhhhccCCcc-ccccccccccCceEEecccccCCHHHHHHHHHHHH
Q 006254 176 NLKTQIARSPFVQI-----PLGVTEDRLIGSVDVEESVKTGTTV-FQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLT 249 (653)
Q Consensus 176 ~~~~~~~~~~fv~l-----~~~~~~~~l~G~~d~~~~~~~g~~~-~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~l~ 249 (653)
...|||.+ |....+++|||+. .+.++|... -..|.+.+|++|+||+|||..||..+|..||.+++
T Consensus 362 ------~~gpfvAvNCaAip~~liesELFGy~---~GafTga~~kG~~g~~~~A~gGtlFldeIgd~p~~~Qs~LLrVl~ 432 (606)
T COG3284 362 ------AAGPFVAVNCAAIPEALIESELFGYV---AGAFTGARRKGYKGKLEQADGGTLFLDEIGDMPLALQSRLLRVLQ 432 (606)
T ss_pred ------ccCCeEEEEeccchHHhhhHHHhccC---ccccccchhccccccceecCCCccHHHHhhhchHHHHHHHHHHHh
Confidence 25677764 5566778999986 677887764 45799999999999999999999999999999999
Q ss_pred cCceEEeeCCeeEEeecCcEEEEEecC------CCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhh
Q 006254 250 EGVNIVEREGISFKHPCKPLLIATYNP------EEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFK 323 (653)
Q Consensus 250 ~g~~~v~r~G~s~~~p~~~~lIattNp------~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~ 323 (653)
+|+ |.+.|+.. .+.++.||+||+. ..|.|+++|++|++.. .|..|+.+++...|..+...+.+
T Consensus 433 e~~--v~p~g~~~-~~vdirvi~ath~dl~~lv~~g~fredLyyrL~~~-~i~lP~lr~R~d~~~~l~~~~~~------- 501 (606)
T COG3284 433 EGV--VTPLGGTR-IKVDIRVIAATHRDLAQLVEQGRFREDLYYRLNAF-VITLPPLRERSDRIPLLDRILKR------- 501 (606)
T ss_pred hCc--eeccCCcc-eeEEEEEEeccCcCHHHHHHcCCchHHHHHHhcCe-eeccCchhcccccHHHHHHHHHH-------
Confidence 999 77889988 9999999999996 4689999999999887 67778777766655443322211
Q ss_pred hhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHH
Q 006254 324 MVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDL 395 (653)
Q Consensus 324 ~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv 395 (653)
+.-....++++++..|..+.|++|+ |...++++. ++++.+...|...|+
T Consensus 502 -----------------~~~~~~~l~~~~~~~l~~~~WPGNi---rel~~v~~~---~~~l~~~g~~~~~dl 550 (606)
T COG3284 502 -----------------ENDWRLQLDDDALARLLAYRWPGNI---RELDNVIER---LAALSDGGRIRVSDL 550 (606)
T ss_pred -----------------ccCCCccCCHHHHHHHHhCCCCCcH---HHHHHHHHH---HHHcCCCCeeEcccC
Confidence 1113468999999999999999987 666666655 455555555655554
No 54
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=6.3e-19 Score=183.36 Aligned_cols=162 Identities=21% Similarity=0.254 Sum_probs=125.5
Q ss_pred CCCCCCCceechHHHHHHHHHhcccCCC------------ceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCC
Q 006254 89 RQFFPLAAVVGQDAIKTALLLGAIDREI------------GGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT 156 (653)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~~~av~p~~------------~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~ 156 (653)
.+...|++|.|..++|+-|..|++-|-. .|||++||||||||+|||+++.+.
T Consensus 206 np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc---------------- 269 (491)
T KOG0738|consen 206 NPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATEC---------------- 269 (491)
T ss_pred CCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhh----------------
Confidence 4567899999999999999888877632 469999999999999999999864
Q ss_pred CCCcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccc---cCceEEeccc
Q 006254 157 CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEI 233 (653)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~IDEi 233 (653)
+..|++++.++..++|-|.- |+ ...=+|..| ...+||||||
T Consensus 270 --------------------------~tTFFNVSsstltSKwRGeS--EK--------lvRlLFemARfyAPStIFiDEI 313 (491)
T KOG0738|consen 270 --------------------------GTTFFNVSSSTLTSKWRGES--EK--------LVRLLFEMARFYAPSTIFIDEI 313 (491)
T ss_pred --------------------------cCeEEEechhhhhhhhccch--HH--------HHHHHHHHHHHhCCceeehhhH
Confidence 57899999999999999952 11 112233333 3579999999
Q ss_pred ccC------------CHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCH
Q 006254 234 NLL------------DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTF 301 (653)
Q Consensus 234 ~~l------------~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~ 301 (653)
+.| +..+-+-||..|+--....+ -...++|+|+|| -+++++++|++||...|+|++| +.
T Consensus 314 Dslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e-------~~k~VmVLAATN-~PWdiDEAlrRRlEKRIyIPLP-~~ 384 (491)
T KOG0738|consen 314 DSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLE-------NSKVVMVLAATN-FPWDIDEALRRRLEKRIYIPLP-DA 384 (491)
T ss_pred HHHHhcCCCccchhHHHHHHHHHHHHhhccccccc-------cceeEEEEeccC-CCcchHHHHHHHHhhheeeeCC-CH
Confidence 876 33466778887873222111 122368899999 9999999999999999999975 88
Q ss_pred hhHHHHHHHH
Q 006254 302 EDRVAAVGIA 311 (653)
Q Consensus 302 ~~r~~I~~~~ 311 (653)
+.|..++++.
T Consensus 385 ~~R~~Li~~~ 394 (491)
T KOG0738|consen 385 EARSALIKIL 394 (491)
T ss_pred HHHHHHHHHh
Confidence 8898888754
No 55
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.77 E-value=1e-17 Score=185.93 Aligned_cols=232 Identities=23% Similarity=0.298 Sum_probs=179.1
Q ss_pred ceechHHHHHHH--HHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccccccc
Q 006254 96 AVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDT 173 (653)
Q Consensus 96 ~IvGq~~~k~aL--~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~~~ 173 (653)
.++|.+..+..+ .+..+.+...+|+|+|++||||+++|+++|...+.
T Consensus 140 ~lig~s~~~~~~~~~i~~~~~~~~~vli~ge~g~gk~~~a~~ih~~s~~------------------------------- 188 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSAR------------------------------- 188 (441)
T ss_pred ceEecCHHHHHHHHHHhhccCCCCeEEEEecCCCCHHHHHHHHHHcCCC-------------------------------
Confidence 477777666655 23445567788999999999999999999997752
Q ss_pred cccccccccCCCeEeCCCCCcc-----cceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHHHHH
Q 006254 174 AGNLKTQIARSPFVQIPLGVTE-----DRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVL 248 (653)
Q Consensus 174 ~~~~~~~~~~~~fv~l~~~~~~-----~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~l 248 (653)
...||+.+++.... +.+||. +++.++|......|++..|++|+||||||+.|+...|..|+.++
T Consensus 189 --------~~~~~i~~~c~~~~~~~~~~~lfg~---~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~~~~q~~l~~~l 257 (441)
T PRK10365 189 --------SEKPLVTLNCAALNESLLESELFGH---EKGAFTGADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAI 257 (441)
T ss_pred --------CCCCeeeeeCCCCCHHHHHHHhcCC---CCCCcCCCCcCCCCceeECCCCEEEEeccccCCHHHHHHHHHHH
Confidence 35788888776553 355665 35556676667889999999999999999999999999999999
Q ss_pred HcCceEEeeCCeeEEeecCcEEEEEecCC------CCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHh
Q 006254 249 TEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVF 322 (653)
Q Consensus 249 ~~g~~~v~r~G~s~~~p~~~~lIattNp~------eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~ 322 (653)
+++. +.+.|.+..++.++++|++|+.+ ++.+++.|++||... .+..|+.++++.||..++..|....
T Consensus 258 ~~~~--~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~~~l~~~-~i~~ppLreR~~Di~~l~~~~l~~~---- 330 (441)
T PRK10365 258 QERE--VQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVV-AIEVPSLRQRREDIPLLAGHFLQRF---- 330 (441)
T ss_pred ccCc--EEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhccc-eecCCChhhcchhHHHHHHHHHHHH----
Confidence 9998 67888888888899999999864 467999999999876 7777899999999998888775421
Q ss_pred hhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHH
Q 006254 323 KMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKK 397 (653)
Q Consensus 323 ~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~ 397 (653)
.. +.....+.+++++++.|..+.|++|+ |...++++.+- .+.....|+.+|+..
T Consensus 331 --------------~~-~~~~~~~~~~~~a~~~L~~~~wpgN~---reL~~~~~~~~---~~~~~~~i~~~~l~~ 384 (441)
T PRK10365 331 --------------AE-RNRKAVKGFTPQAMDLLIHYDWPGNI---RELENAVERAV---VLLTGEYISERELPL 384 (441)
T ss_pred --------------HH-HhCCCCCCcCHHHHHHHHhCCCCCHH---HHHHHHHHHHH---HhCCCCccchHhCch
Confidence 10 11122356999999999999999987 66666665433 233445788888743
No 56
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=99.76 E-value=1.8e-17 Score=182.48 Aligned_cols=259 Identities=20% Similarity=0.233 Sum_probs=185.1
Q ss_pred ceechHHHHHHHHHhcccCC------------CceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccc
Q 006254 96 AVVGQDAIKTALLLGAIDRE------------IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWED 163 (653)
Q Consensus 96 ~IvGq~~~k~aL~~~av~p~------------~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~ 163 (653)
.|.|+|.+|++|++.++.-. .-+|||+|.||||||.+.+.+|+++|+-.
T Consensus 430 sIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~------------------- 490 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGV------------------- 490 (804)
T ss_pred hhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcce-------------------
Confidence 68999999999988776321 13599999999999999999999998411
Q ss_pred cccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHH
Q 006254 164 GLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNL 243 (653)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~ 243 (653)
||+.+ +.+...|.-++ .+.-.++..+.+-|.|..+++||.+|||+|+|++.....
T Consensus 491 -------yTSGk----------------GsSavGLTayV--trd~dtkqlVLesGALVLSD~GiCCIDEFDKM~dStrSv 545 (804)
T KOG0478|consen 491 -------YTSGK----------------GSSAVGLTAYV--TKDPDTRQLVLESGALVLSDNGICCIDEFDKMSDSTRSV 545 (804)
T ss_pred -------eecCC----------------ccchhcceeeE--EecCccceeeeecCcEEEcCCceEEchhhhhhhHHHHHH
Confidence 11111 11111122211 233445677888999999999999999999999999999
Q ss_pred HHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCC------------cccHHHHhhhcccccccCCCCHhhHHHHHHHH
Q 006254 244 LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG------------VVREHLLDRIAINLSADLPMTFEDRVAAVGIA 311 (653)
Q Consensus 244 Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg------------~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~ 311 (653)
|+++|++..+.|...|+-.+.+++..|||+.||-++ .|++.||+||++++-+-. ..+++.|. .++
T Consensus 546 LhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLSRFDLIylllD--~~DE~~Dr-~La 622 (804)
T KOG0478|consen 546 LHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLLLD--KPDERSDR-RLA 622 (804)
T ss_pred HHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhhhhcEEEEEec--CcchhHHH-HHH
Confidence 999999999999999999999999999999998442 488999999999855543 33444322 122
Q ss_pred HHHHhhhh---HHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhc---------CCCCcchHHHHHHHHH
Q 006254 312 TQFQERSN---EVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRG---------GCQGHRAELYAARVAK 379 (653)
Q Consensus 312 ~~~~~~~~---~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~---------~i~s~R~~i~llr~Ar 379 (653)
.+...-.. +......-....++..|..|++... ..+++++.+.+.+..... .....|.+..+.|.+.
T Consensus 623 ~HivsLy~e~~~~~~~~~~d~~~lr~yi~yArk~i~-p~l~~ea~~~l~~ayvd~rk~~~~~~~itat~rQlesLiRlsE 701 (804)
T KOG0478|consen 623 DHIVALYPETGEKQGSEAIDMNLLRDYIRYARKNIH-PALSPEASQALIQAYVDMRKIGEGAGQITATPRQLESLIRLSE 701 (804)
T ss_pred HHHHHhcccccccchhHHHhHHHHHHHHHHHhccCC-ccccHHHHHHHHHHhhhhhhhcccccccchhHHHHHHHHHHHH
Confidence 22221111 1111112222346677777776443 467777777776653221 2245788889999999
Q ss_pred HHHHHcCCCCccHHHHHHHHHHH
Q 006254 380 CLAALEGREKVNVDDLKKAVELV 402 (653)
Q Consensus 380 a~Aal~gr~~Vt~eDv~~A~~lv 402 (653)
++|.+.-.+.|...||++|+.|.
T Consensus 702 ahak~r~s~~ve~~dV~eA~~l~ 724 (804)
T KOG0478|consen 702 AHAKMRLSNRVEEIDVEEAVRLL 724 (804)
T ss_pred HHHHhhcccccchhhHHHHHHHH
Confidence 99999999999999999998763
No 57
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.76 E-value=1.7e-17 Score=174.21 Aligned_cols=162 Identities=23% Similarity=0.256 Sum_probs=120.2
Q ss_pred HHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccccccccccccccc
Q 006254 102 AIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQI 181 (653)
Q Consensus 102 ~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (653)
+..++++.+.. ..++|||.|+||||||++++.|+..+.
T Consensus 52 ~~~~~vl~~l~--~~~~ilL~G~pGtGKTtla~~lA~~l~---------------------------------------- 89 (327)
T TIGR01650 52 ATTKAICAGFA--YDRRVMVQGYHGTGKSTHIEQIAARLN---------------------------------------- 89 (327)
T ss_pred HHHHHHHHHHh--cCCcEEEEeCCCChHHHHHHHHHHHHC----------------------------------------
Confidence 44455555443 357899999999999999999999884
Q ss_pred cCCCeEe--CCCCCcccceeeecchhhhhccCC--ccccccccccc--cCceEEecccccCCHHHHHHHHHHHH-cCceE
Q 006254 182 ARSPFVQ--IPLGVTEDRLIGSVDVEESVKTGT--TVFQPGLLAEA--HRGVLYIDEINLLDEGISNLLLNVLT-EGVNI 254 (653)
Q Consensus 182 ~~~~fv~--l~~~~~~~~l~G~~d~~~~~~~g~--~~~~~Gll~~A--~~giL~IDEi~~l~~~~~~~Ll~~l~-~g~~~ 254 (653)
.+|+. ++..++...++|..-+ .+..|. ..+++|.|..| ++++||+||||++++++++.|+.+++ ++.++
T Consensus 90 --~~~~rV~~~~~l~~~DliG~~~~--~l~~g~~~~~f~~GpL~~A~~~g~illlDEin~a~p~~~~~L~~lLE~~~~l~ 165 (327)
T TIGR01650 90 --WPCVRVNLDSHVSRIDLVGKDAI--VLKDGKQITEFRDGILPWALQHNVALCFDEYDAGRPDVMFVIQRVLEAGGKLT 165 (327)
T ss_pred --CCeEEEEecCCCChhhcCCCcee--eccCCcceeEEecCcchhHHhCCeEEEechhhccCHHHHHHHHHHhccCCeEE
Confidence 34433 4555666678886311 122343 46789999776 67789999999999999999999999 46776
Q ss_pred EeeCCeeEEeecCcEEEEEecCCC---------C--cccHHHHhhhcccccccCCCCHhhHHHHHHH
Q 006254 255 VEREGISFKHPCKPLLIATYNPEE---------G--VVREHLLDRIAINLSADLPMTFEDRVAAVGI 310 (653)
Q Consensus 255 v~r~G~s~~~p~~~~lIattNp~e---------g--~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~ 310 (653)
+...+..+..+..|++|||+||.+ | .+.++++|||.+.+.+++| +.+...+|+..
T Consensus 166 i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp-~~e~E~~Il~~ 231 (327)
T TIGR01650 166 LLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLNYL-EHDNEAAIVLA 231 (327)
T ss_pred ECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeCCCC-CHHHHHHHHHh
Confidence 655455443334899999999943 1 4789999999988889976 67777777653
No 58
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.76 E-value=2.3e-17 Score=176.41 Aligned_cols=222 Identities=19% Similarity=0.199 Sum_probs=157.5
Q ss_pred CCCCCCCCceechHHHHHHHHHhcc-----cCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccc
Q 006254 88 GRQFFPLAAVVGQDAIKTALLLGAI-----DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWE 162 (653)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~~~av-----~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~ 162 (653)
+.+|..|++++||+..+..|...+. .....++||+||||||||++|+++++.+..
T Consensus 18 ~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~-------------------- 77 (328)
T PRK00080 18 SLRPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGV-------------------- 77 (328)
T ss_pred hcCcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCC--------------------
Confidence 4567789999999999988843322 223568999999999999999999998741
Q ss_pred ccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHH
Q 006254 163 DGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISN 242 (653)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~ 242 (653)
.+.......... .+ |+...+ -....++|||||||+.++...++
T Consensus 78 ----------------------~~~~~~~~~~~~--~~--~l~~~l-----------~~l~~~~vl~IDEi~~l~~~~~e 120 (328)
T PRK00080 78 ----------------------NIRITSGPALEK--PG--DLAAIL-----------TNLEEGDVLFIDEIHRLSPVVEE 120 (328)
T ss_pred ----------------------CeEEEecccccC--hH--HHHHHH-----------HhcccCCEEEEecHhhcchHHHH
Confidence 111111000000 00 111100 01134679999999999999999
Q ss_pred HHHHHHHcCceEE-eeCCee---E--EeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHh
Q 006254 243 LLLNVLTEGVNIV-EREGIS---F--KHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQE 316 (653)
Q Consensus 243 ~Ll~~l~~g~~~v-~r~G~s---~--~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~ 316 (653)
.|+.+|++..+.+ -..|.. . ..| .|++|++|| ..+.++++|++||+.++.+. +++.++..+|++....
T Consensus 121 ~l~~~~e~~~~~~~l~~~~~~~~~~~~l~-~~~li~at~-~~~~l~~~L~sRf~~~~~l~-~~~~~e~~~il~~~~~--- 194 (328)
T PRK00080 121 ILYPAMEDFRLDIMIGKGPAARSIRLDLP-PFTLIGATT-RAGLLTSPLRDRFGIVQRLE-FYTVEELEKIVKRSAR--- 194 (328)
T ss_pred HHHHHHHhcceeeeeccCccccceeecCC-CceEEeecC-CcccCCHHHHHhcCeeeecC-CCCHHHHHHHHHHHHH---
Confidence 9999999875432 222221 1 123 589999999 55678899999999988998 6788887777763211
Q ss_pred hhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHH
Q 006254 317 RSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLK 396 (653)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~ 396 (653)
..++.+++++++.|++.|.. ..|....+++.+...|...+...|+.+++.
T Consensus 195 --------------------------~~~~~~~~~~~~~ia~~~~G----~pR~a~~~l~~~~~~a~~~~~~~I~~~~v~ 244 (328)
T PRK00080 195 --------------------------ILGVEIDEEGALEIARRSRG----TPRIANRLLRRVRDFAQVKGDGVITKEIAD 244 (328)
T ss_pred --------------------------HcCCCcCHHHHHHHHHHcCC----CchHHHHHHHHHHHHHHHcCCCCCCHHHHH
Confidence 12578999999999887643 469999999988888888877899999999
Q ss_pred HHHHHH
Q 006254 397 KAVELV 402 (653)
Q Consensus 397 ~A~~lv 402 (653)
.++...
T Consensus 245 ~~l~~~ 250 (328)
T PRK00080 245 KALDML 250 (328)
T ss_pred HHHHHh
Confidence 999653
No 59
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.75 E-value=4e-18 Score=154.74 Aligned_cols=124 Identities=29% Similarity=0.397 Sum_probs=84.6
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeE--eCCCCCcc
Q 006254 118 GIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFV--QIPLGVTE 195 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv--~l~~~~~~ 195 (653)
||||+|+||+|||++|++++..+. ..|. .....+..
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~------------------------------------------~~f~RIq~tpdllP 38 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLG------------------------------------------LSFKRIQFTPDLLP 38 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--------------------------------------------EEEEE--TT--H
T ss_pred CEeeECCCccHHHHHHHHHHHHcC------------------------------------------CceeEEEecCCCCc
Confidence 699999999999999999999875 2233 33455777
Q ss_pred cceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEec
Q 006254 196 DRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYN 275 (653)
Q Consensus 196 ~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattN 275 (653)
+.++|..-.. ..++...+.+|.+. .+||++||||+.++.+|.+||++|+++. |.-+|.++..|..|.+|||+|
T Consensus 39 sDi~G~~v~~--~~~~~f~~~~GPif---~~ill~DEiNrappktQsAlLeam~Er~--Vt~~g~~~~lp~pf~ViATqN 111 (131)
T PF07726_consen 39 SDILGFPVYD--QETGEFEFRPGPIF---TNILLADEINRAPPKTQSALLEAMEERQ--VTIDGQTYPLPDPFFVIATQN 111 (131)
T ss_dssp HHHHEEEEEE--TTTTEEEEEE-TT----SSEEEEETGGGS-HHHHHHHHHHHHHSE--EEETTEEEE--SS-EEEEEE-
T ss_pred ccceeeeeec--cCCCeeEeecChhh---hceeeecccccCCHHHHHHHHHHHHcCe--EEeCCEEEECCCcEEEEEecC
Confidence 7888863211 12256677888886 4699999999999999999999999999 455699999999999999999
Q ss_pred CCCC----cccHHHHhhhc
Q 006254 276 PEEG----VVREHLLDRIA 290 (653)
Q Consensus 276 p~eg----~l~~aLldRf~ 290 (653)
|.+. .|+++++|||-
T Consensus 112 p~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 112 PVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp TT--S------HHHHTTSS
T ss_pred ccccCceecCCHHHhcccc
Confidence 9653 59999999995
No 60
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.74 E-value=4.9e-17 Score=171.94 Aligned_cols=215 Identities=22% Similarity=0.220 Sum_probs=150.4
Q ss_pred CCCceechHHHHHHHHHhcc-----cCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccc
Q 006254 93 PLAAVVGQDAIKTALLLGAI-----DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDE 167 (653)
Q Consensus 93 ~f~~IvGq~~~k~aL~~~av-----~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~ 167 (653)
.|++++||++++..|...+. .....+++|+||||||||++|+++++.+..
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~------------------------- 56 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGV------------------------- 56 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCC-------------------------
Confidence 58899999999998844322 123467999999999999999999998741
Q ss_pred cccccccccccccccCCCeEeCCCC--CcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHH
Q 006254 168 KAEYDTAGNLKTQIARSPFVQIPLG--VTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLL 245 (653)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~fv~l~~~--~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll 245 (653)
.+..+... .....+.+ .+. ....+.+||||||+.+++..++.|+
T Consensus 57 -----------------~~~~~~~~~~~~~~~l~~------~l~-----------~~~~~~vl~iDEi~~l~~~~~e~l~ 102 (305)
T TIGR00635 57 -----------------NLKITSGPALEKPGDLAA------ILT-----------NLEEGDVLFIDEIHRLSPAVEELLY 102 (305)
T ss_pred -----------------CEEEeccchhcCchhHHH------HHH-----------hcccCCEEEEehHhhhCHHHHHHhh
Confidence 11111100 00011111 110 0123579999999999999999999
Q ss_pred HHHHcCceEEe-eCCe---eEE-eecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhH
Q 006254 246 NVLTEGVNIVE-REGI---SFK-HPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNE 320 (653)
Q Consensus 246 ~~l~~g~~~v~-r~G~---s~~-~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~ 320 (653)
.+|++....+- -.|. ... ....+.+|++|| ....+.++|++||+.++.+. |++.++..+++.....
T Consensus 103 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~-~~~~l~~~l~sR~~~~~~l~-~l~~~e~~~il~~~~~------- 173 (305)
T TIGR00635 103 PAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATT-RAGMLTSPLRDRFGIILRLE-FYTVEELAEIVSRSAG------- 173 (305)
T ss_pred HHHhhhheeeeeccCccccceeecCCCeEEEEecC-CccccCHHHHhhcceEEEeC-CCCHHHHHHHHHHHHH-------
Confidence 99988764321 1111 111 112488999998 55788999999999888888 6788877777652210
Q ss_pred HhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHHH
Q 006254 321 VFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (653)
Q Consensus 321 ~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~ 400 (653)
...+.++++++++|++.|.. ..|..+.+++.+..+|...+...|+.+++..++.
T Consensus 174 ----------------------~~~~~~~~~al~~ia~~~~G----~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~l~ 227 (305)
T TIGR00635 174 ----------------------LLNVEIEPEAALEIARRSRG----TPRIANRLLRRVRDFAQVRGQKIINRDIALKALE 227 (305)
T ss_pred ----------------------HhCCCcCHHHHHHHHHHhCC----CcchHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Confidence 12568999999999887543 3588888888888888777778899999999998
Q ss_pred H
Q 006254 401 L 401 (653)
Q Consensus 401 l 401 (653)
.
T Consensus 228 ~ 228 (305)
T TIGR00635 228 M 228 (305)
T ss_pred H
Confidence 6
No 61
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.73 E-value=6.8e-18 Score=157.62 Aligned_cols=128 Identities=34% Similarity=0.448 Sum_probs=100.0
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeEeCCCCCcccc
Q 006254 118 GIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDR 197 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~ 197 (653)
+|||+||||||||++|+.++..+.. +.-.+.++...+++.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~----------------------------------------~~~~i~~~~~~~~~d 40 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGR----------------------------------------PVIRINCSSDTTEED 40 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTC----------------------------------------EEEEEE-TTTSTHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhc----------------------------------------ceEEEEecccccccc
Confidence 6999999999999999999998741 223456788899999
Q ss_pred eeeecchhhhhccCCccccccccccc--cCceEEecccccCCHHHHHHHHHHHHcCceEEeeCCeeEEeec------CcE
Q 006254 198 LIGSVDVEESVKTGTTVFQPGLLAEA--HRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPC------KPL 269 (653)
Q Consensus 198 l~G~~d~~~~~~~g~~~~~~Gll~~A--~~giL~IDEi~~l~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~------~~~ 269 (653)
|+|.+++. .+...+.+|.+..+ +++|+||||||+.++++++.|+.+++++.+.+...+.....+. +|+
T Consensus 41 l~g~~~~~----~~~~~~~~~~l~~a~~~~~il~lDEin~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (139)
T PF07728_consen 41 LIGSYDPS----NGQFEFKDGPLVRAMRKGGILVLDEINRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFR 116 (139)
T ss_dssp HHCEEET-----TTTTCEEE-CCCTTHHEEEEEEESSCGG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EE
T ss_pred ceeeeeec----ccccccccccccccccceeEEEECCcccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceE
Confidence 99998765 67788888888876 7899999999999999999999999999876654444444443 499
Q ss_pred EEEEecCCC---CcccHHHHhhh
Q 006254 270 LIATYNPEE---GVVREHLLDRI 289 (653)
Q Consensus 270 lIattNp~e---g~l~~aLldRf 289 (653)
+|+|+|+.. ..++++|+|||
T Consensus 117 ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 117 IIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp EEEEESSST--TTTTCHHHHTT-
T ss_pred EEEEEcCCCCCcCcCCHHHHhhC
Confidence 999999876 57999999998
No 62
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.72 E-value=1.5e-17 Score=171.62 Aligned_cols=229 Identities=20% Similarity=0.233 Sum_probs=157.9
Q ss_pred cccCCCCCCCCceechHHHHH--HHHHhccc-CCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcc
Q 006254 85 DSYGRQFFPLAAVVGQDAIKT--ALLLGAID-REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEW 161 (653)
Q Consensus 85 ~~~~~~~~~f~~IvGq~~~k~--aL~~~av~-p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~ 161 (653)
...+.+|..++++|||+++.- .++..++. ..+..++||||||||||+|||.|+.....
T Consensus 128 LaermRPktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~------------------- 188 (554)
T KOG2028|consen 128 LAERMRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKK------------------- 188 (554)
T ss_pred hhhhcCcchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCC-------------------
Confidence 334567888999999997643 44444443 25678999999999999999999986641
Q ss_pred cccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHH
Q 006254 162 EDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGIS 241 (653)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~ 241 (653)
....||+++...+ +.-|+.. +++.... -....-...|||||||++++...|
T Consensus 189 --------------------~SyrfvelSAt~a-----~t~dvR~-ife~aq~---~~~l~krkTilFiDEiHRFNksQQ 239 (554)
T KOG2028|consen 189 --------------------HSYRFVELSATNA-----KTNDVRD-IFEQAQN---EKSLTKRKTILFIDEIHRFNKSQQ 239 (554)
T ss_pred --------------------CceEEEEEecccc-----chHHHHH-HHHHHHH---HHhhhcceeEEEeHHhhhhhhhhh
Confidence 1245676654432 1112211 1111110 011112357999999999999999
Q ss_pred HHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCC-cccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhH
Q 006254 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG-VVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNE 320 (653)
Q Consensus 242 ~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg-~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~ 320 (653)
+.+|..++.|. +.|||+|..++. .|..+|++|+-++ .+. +..++....|+.++...+.+...
T Consensus 240 D~fLP~VE~G~---------------I~lIGATTENPSFqln~aLlSRC~Vf-vLe-kL~~n~v~~iL~raia~l~dser 302 (554)
T KOG2028|consen 240 DTFLPHVENGD---------------ITLIGATTENPSFQLNAALLSRCRVF-VLE-KLPVNAVVTILMRAIASLGDSER 302 (554)
T ss_pred hcccceeccCc---------------eEEEecccCCCccchhHHHHhcccee-Eec-cCCHHHHHHHHHHHHHhhccccc
Confidence 99999999986 579999886664 7889999999887 455 66788888888876554433211
Q ss_pred HhhhhhhhhhHHHHHHHHHHhhhcc--cCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcC----CCCccHHH
Q 006254 321 VFKMVEEETDLAKTQIILAREYLKD--VAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEG----REKVNVDD 394 (653)
Q Consensus 321 ~~~~~~~~~~~l~~~i~~ar~~l~~--v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~g----r~~Vt~eD 394 (653)
. -.-+++ +.+++.++++++.++.. ..|+.++.++++..++-... +..++.+|
T Consensus 303 ~------------------~~~l~n~s~~ve~siidyla~lsdG----DaR~aLN~Lems~~m~~tr~g~~~~~~lSidD 360 (554)
T KOG2028|consen 303 P------------------TDPLPNSSMFVEDSIIDYLAYLSDG----DARAALNALEMSLSMFCTRSGQSSRVLLSIDD 360 (554)
T ss_pred c------------------CCCCCCcchhhhHHHHHHHHHhcCc----hHHHHHHHHHHHHHHHHhhcCCcccceecHHH
Confidence 0 012333 56899999999988753 37999999998866655432 45899999
Q ss_pred HHHHHH
Q 006254 395 LKKAVE 400 (653)
Q Consensus 395 v~~A~~ 400 (653)
|+++++
T Consensus 361 vke~lq 366 (554)
T KOG2028|consen 361 VKEGLQ 366 (554)
T ss_pred HHHHHh
Confidence 999986
No 63
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.71 E-value=4.6e-17 Score=177.85 Aligned_cols=217 Identities=23% Similarity=0.284 Sum_probs=137.4
Q ss_pred ceechHHHHHHHHHhcccC----------------CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCC
Q 006254 96 AVVGQDAIKTALLLGAIDR----------------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPD 159 (653)
Q Consensus 96 ~IvGq~~~k~aL~~~av~p----------------~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~ 159 (653)
.|+||+.+|++|..++.++ ..++|||+||||||||++|++||..+
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l------------------- 132 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL------------------- 132 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh-------------------
Confidence 4999999999996655321 34789999999999999999999876
Q ss_pred cccccccccccccccccccccccCCCeEeCCCCC-cccceeeecchhhhhccCCccccccccccccCceEEecccccCCH
Q 006254 160 EWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGV-TEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDE 238 (653)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~-~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~ 238 (653)
+.||+.+.... ++..++|. |++.-+. +......+.+..+.+||||||||+.++.
T Consensus 133 -----------------------~~pf~~id~~~l~~~gyvG~-d~e~~l~-~l~~~~~~~~~~a~~gIi~iDEIdkl~~ 187 (412)
T PRK05342 133 -----------------------DVPFAIADATTLTEAGYVGE-DVENILL-KLLQAADYDVEKAQRGIVYIDEIDKIAR 187 (412)
T ss_pred -----------------------CCCceecchhhcccCCcccc-hHHHHHH-HHHHhccccHHHcCCcEEEEechhhhcc
Confidence 35677665543 34456664 2222221 1111234566778899999999999975
Q ss_pred --------------HHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecC---CCCc---------------------
Q 006254 239 --------------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP---EEGV--------------------- 280 (653)
Q Consensus 239 --------------~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp---~eg~--------------------- 280 (653)
.+|+.||.+|+...+.+...|+...-..++++|.|+|. +.|.
T Consensus 188 ~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~ 267 (412)
T PRK05342 188 KSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGA 267 (412)
T ss_pred ccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCcc
Confidence 38999999998666555443432222246888888887 1111
Q ss_pred ---------------------------ccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHH
Q 006254 281 ---------------------------VREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAK 333 (653)
Q Consensus 281 ---------------------------l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~ 333 (653)
|.|.|+.|++.+|.+. |.+.+....|+..-.. .+.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~-~L~~~~L~~Il~~~~~-----------------~l~ 329 (412)
T PRK05342 268 EVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPVVATLE-ELDEEALVRILTEPKN-----------------ALV 329 (412)
T ss_pred ccccccccchhHHHHHhcCHHHHHHHhhhHHHhCCCCeeeecC-CCCHHHHHHHHHHHHH-----------------HHH
Confidence 4566666777666665 5666666666542110 001
Q ss_pred HHHH-HHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 006254 334 TQII-LAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAA 375 (653)
Q Consensus 334 ~~i~-~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~ll 375 (653)
.++. .....--.+.++++++++|++.+...+. |.|....++
T Consensus 330 ~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~-GAR~Lrrii 371 (412)
T PRK05342 330 KQYQKLFEMDGVELEFTDEALEAIAKKAIERKT-GARGLRSIL 371 (412)
T ss_pred HHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCC-CCchHHHHH
Confidence 1111 1111223478999999999997655433 556555443
No 64
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.71 E-value=9e-17 Score=166.45 Aligned_cols=214 Identities=19% Similarity=0.231 Sum_probs=140.8
Q ss_pred CCceechHHHHHHHH--Hhc-------------ccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCC
Q 006254 94 LAAVVGQDAIKTALL--LGA-------------IDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCP 158 (653)
Q Consensus 94 f~~IvGq~~~k~aL~--~~a-------------v~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~ 158 (653)
+++++|++.+|.++. .+. ..+...+|||+||||||||++|++++..+.....
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~------------- 71 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNV------------- 71 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCc-------------
Confidence 467999999998882 111 1234567999999999999999999997632110
Q ss_pred CcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCC-
Q 006254 159 DEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLD- 237 (653)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~- 237 (653)
.....|+.++.......++|.. .....+++..+.+|||||||++.|.
T Consensus 72 ----------------------~~~~~~v~~~~~~l~~~~~g~~----------~~~~~~~~~~a~~~VL~IDE~~~L~~ 119 (261)
T TIGR02881 72 ----------------------LSKGHLIEVERADLVGEYIGHT----------AQKTREVIKKALGGVLFIDEAYSLAR 119 (261)
T ss_pred ----------------------ccCCceEEecHHHhhhhhccch----------HHHHHHHHHhccCCEEEEechhhhcc
Confidence 0123455555443333444421 1112356777888999999999975
Q ss_pred -------HHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCC----cccHHHHhhhcccccccCCCCHhhHHH
Q 006254 238 -------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG----VVREHLLDRIAINLSADLPMTFEDRVA 306 (653)
Q Consensus 238 -------~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg----~l~~aLldRf~~~v~l~~p~~~~~r~~ 306 (653)
.+.++.|+..|+++. .++++|+++++.+. .++|+|.+||...|.++ +++.+++.+
T Consensus 120 ~~~~~~~~~~i~~Ll~~~e~~~-------------~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~-~~~~~el~~ 185 (261)
T TIGR02881 120 GGEKDFGKEAIDTLVKGMEDNR-------------NEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFP-DYTVEELME 185 (261)
T ss_pred CCccchHHHHHHHHHHHHhccC-------------CCEEEEecCCcchhHHHHhcChHHHhccceEEEEC-CCCHHHHHH
Confidence 457889999998753 24677777666442 46789999999888888 678888888
Q ss_pred HHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHh------cCCCCcchHHHHHHHHHH
Q 006254 307 AVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALR------GGCQGHRAELYAARVAKC 380 (653)
Q Consensus 307 I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~------~~i~s~R~~i~llr~Ara 380 (653)
|++.... . ....++++++.+|.++... ......|...+++..|..
T Consensus 186 Il~~~~~---------------------------~--~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a~~ 236 (261)
T TIGR02881 186 IAERMVK---------------------------E--REYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKAIR 236 (261)
T ss_pred HHHHHHH---------------------------H--cCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHH
Confidence 8763211 0 2356888888888765422 122356888888887766
Q ss_pred HHHH--cCCCCccHHHH
Q 006254 381 LAAL--EGREKVNVDDL 395 (653)
Q Consensus 381 ~Aal--~gr~~Vt~eDv 395 (653)
..+. -+...++.+|+
T Consensus 237 ~~~~r~~~~~~~~~~~~ 253 (261)
T TIGR02881 237 RQAVRLLDKSDYSKEDL 253 (261)
T ss_pred HHHHHHhccCCCCHHHH
Confidence 6542 22234444443
No 65
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.71 E-value=6.6e-17 Score=176.56 Aligned_cols=224 Identities=19% Similarity=0.235 Sum_probs=150.1
Q ss_pred CCCCCCCCceechHHHHHHHHHhccc-------------CCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCC
Q 006254 88 GRQFFPLAAVVGQDAIKTALLLGAID-------------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANAD 154 (653)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~~~av~-------------p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~ 154 (653)
+.+.+.|++|.|.+..++.|...... +...+|||+||||||||++|++++..+.
T Consensus 124 ~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~------------- 190 (389)
T PRK03992 124 ESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN------------- 190 (389)
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC-------------
Confidence 34578899999999988887433221 1245799999999999999999999763
Q ss_pred CCCCCcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccc---cCceEEec
Q 006254 155 PTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYID 231 (653)
Q Consensus 155 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~ID 231 (653)
.+|+.+..+.....++|.- .. ....++..| .++|||||
T Consensus 191 -----------------------------~~~i~v~~~~l~~~~~g~~---------~~-~i~~~f~~a~~~~p~IlfiD 231 (389)
T PRK03992 191 -----------------------------ATFIRVVGSELVQKFIGEG---------AR-LVRELFELAREKAPSIIFID 231 (389)
T ss_pred -----------------------------CCEEEeehHHHhHhhccch---------HH-HHHHHHHHHHhcCCeEEEEe
Confidence 4566655443333444421 00 111233332 35799999
Q ss_pred ccccC-----------CHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHh--hhcccccccCC
Q 006254 232 EINLL-----------DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLP 298 (653)
Q Consensus 232 Ei~~l-----------~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLld--Rf~~~v~l~~p 298 (653)
||+.+ +.+++..|+..+..-. |.. ...++.||+||| ....++++|++ ||+..|.++.
T Consensus 232 EiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld------~~~--~~~~v~VI~aTn-~~~~ld~allRpgRfd~~I~v~~- 301 (389)
T PRK03992 232 EIDAIAAKRTDSGTSGDREVQRTLMQLLAEMD------GFD--PRGNVKIIAATN-RIDILDPAILRPGRFDRIIEVPL- 301 (389)
T ss_pred chhhhhcccccCCCCccHHHHHHHHHHHHhcc------ccC--CCCCEEEEEecC-ChhhCCHHHcCCccCceEEEECC-
Confidence 99987 3566666776664322 110 112578999999 56688999996 9999999994
Q ss_pred CCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCH-HHHHHHHHHHHhcCCCCcchHHHHHHH
Q 006254 299 MTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGR-EQLKYLVMEALRGGCQGHRAELYAARV 377 (653)
Q Consensus 299 ~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~-~~l~~l~~~~~~~~i~s~R~~i~llr~ 377 (653)
|+.++|.+|++... ....+.. -.+..++..+ ...+.+....+++.
T Consensus 302 P~~~~R~~Il~~~~-------------------------------~~~~~~~~~~~~~la~~t---~g~sgadl~~l~~e 347 (389)
T PRK03992 302 PDEEGRLEILKIHT-------------------------------RKMNLADDVDLEELAELT---EGASGADLKAICTE 347 (389)
T ss_pred CCHHHHHHHHHHHh-------------------------------ccCCCCCcCCHHHHHHHc---CCCCHHHHHHHHHH
Confidence 58999999976321 1112221 1134444443 33355666677888
Q ss_pred HHHHHHHcCCCCccHHHHHHHHHHHcCCCc
Q 006254 378 AKCLAALEGREKVNVDDLKKAVELVILPRS 407 (653)
Q Consensus 378 Ara~Aal~gr~~Vt~eDv~~A~~lvl~hR~ 407 (653)
|.-.|.-+++..|+.+|+.+|+.-+...+.
T Consensus 348 A~~~a~~~~~~~i~~~d~~~A~~~~~~~~~ 377 (389)
T PRK03992 348 AGMFAIRDDRTEVTMEDFLKAIEKVMGKEE 377 (389)
T ss_pred HHHHHHHcCCCCcCHHHHHHHHHHHhcccc
Confidence 888888888999999999999998876543
No 66
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=2.1e-16 Score=179.44 Aligned_cols=219 Identities=21% Similarity=0.245 Sum_probs=158.7
Q ss_pred CCCCCCceechHHHHHHHHH--h-cccC---------CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCC
Q 006254 90 QFFPLAAVVGQDAIKTALLL--G-AIDR---------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTC 157 (653)
Q Consensus 90 ~~~~f~~IvGq~~~k~aL~~--~-av~p---------~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~ 157 (653)
..++|.||.|.+++|..|.. . +-+| -.+||||+||||||||.||||+|.+.
T Consensus 306 t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA----------------- 368 (774)
T KOG0731|consen 306 TGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA----------------- 368 (774)
T ss_pred CCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-----------------
Confidence 35889999999999999832 1 2233 24789999999999999999999965
Q ss_pred CCcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccc---cCceEEecccc
Q 006254 158 PDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEIN 234 (653)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~IDEi~ 234 (653)
+.||+.++.+-..+.++|. | ......+|..| .+.|+|||||+
T Consensus 369 -------------------------gVPF~svSGSEFvE~~~g~---------~-asrvr~lf~~ar~~aP~iifideid 413 (774)
T KOG0731|consen 369 -------------------------GVPFFSVSGSEFVEMFVGV---------G-ASRVRDLFPLARKNAPSIIFIDEID 413 (774)
T ss_pred -------------------------CCceeeechHHHHHHhccc---------c-hHHHHHHHHHhhccCCeEEEecccc
Confidence 6899999988888888884 2 22334456555 35799999998
Q ss_pred cCC---------------HHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHh--hhcccccccC
Q 006254 235 LLD---------------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADL 297 (653)
Q Consensus 235 ~l~---------------~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLld--Rf~~~v~l~~ 297 (653)
... ..++|.||--||--. . ...++++|+|| ....|+++|++ ||+..|.++.
T Consensus 414 a~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~---------~--~~~vi~~a~tn-r~d~ld~allrpGRfdr~i~i~~ 481 (774)
T KOG0731|consen 414 AVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFE---------T--SKGVIVLAATN-RPDILDPALLRPGRFDRQIQIDL 481 (774)
T ss_pred cccccccccccCCCChHHHHHHHHHHHHhcCCc---------C--CCcEEEEeccC-CccccCHHhcCCCccccceeccC
Confidence 753 245677777776322 1 13589999999 88889999998 9999999995
Q ss_pred CCCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 006254 298 PMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARV 377 (653)
Q Consensus 298 p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~ 377 (653)
++...|.+|++... ..+.++++...+ .+++......+--..-+++.-
T Consensus 482 -p~~~~r~~i~~~h~-------------------------------~~~~~~~e~~dl-~~~a~~t~gf~gadl~n~~ne 528 (774)
T KOG0731|consen 482 -PDVKGRASILKVHL-------------------------------RKKKLDDEDVDL-SKLASLTPGFSGADLANLCNE 528 (774)
T ss_pred -CchhhhHHHHHHHh-------------------------------hccCCCcchhhH-HHHHhcCCCCcHHHHHhhhhH
Confidence 58999999976321 223343333222 224444333233334466777
Q ss_pred HHHHHHHcCCCCccHHHHHHHHHHHcCC
Q 006254 378 AKCLAALEGREKVNVDDLKKAVELVILP 405 (653)
Q Consensus 378 Ara~Aal~gr~~Vt~eDv~~A~~lvl~h 405 (653)
|.-+|+-++..+|+..|+..|++.++..
T Consensus 529 aa~~a~r~~~~~i~~~~~~~a~~Rvi~G 556 (774)
T KOG0731|consen 529 AALLAARKGLREIGTKDLEYAIERVIAG 556 (774)
T ss_pred HHHHHHHhccCccchhhHHHHHHHHhcc
Confidence 7778888999999999999999966664
No 67
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.6e-16 Score=173.17 Aligned_cols=158 Identities=22% Similarity=0.301 Sum_probs=126.2
Q ss_pred CCCCCCCceechHHHHHHHHHhcccCCC-------------ceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCC
Q 006254 89 RQFFPLAAVVGQDAIKTALLLGAIDREI-------------GGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADP 155 (653)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~~~av~p~~-------------~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p 155 (653)
.+.++|++|-|+++++..|..+.+.|-. .||||+||||||||.|||++|+..
T Consensus 505 VPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEa--------------- 569 (802)
T KOG0733|consen 505 VPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEA--------------- 569 (802)
T ss_pred cCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhc---------------
Confidence 3567899999999999999888887732 569999999999999999999976
Q ss_pred CCCCcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccc---cCceEEecc
Q 006254 156 TCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDE 232 (653)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~IDE 232 (653)
...|+.+...-...+|+|.- +++++ -+|..| ..+|+|+||
T Consensus 570 ---------------------------g~NFisVKGPELlNkYVGES--ErAVR--------~vFqRAR~saPCVIFFDE 612 (802)
T KOG0733|consen 570 ---------------------------GANFISVKGPELLNKYVGES--ERAVR--------QVFQRARASAPCVIFFDE 612 (802)
T ss_pred ---------------------------cCceEeecCHHHHHHHhhhH--HHHHH--------HHHHHhhcCCCeEEEecc
Confidence 57888887777778899953 33332 234333 468999999
Q ss_pred cccCC-----------HHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHh--hhcccccccCCC
Q 006254 233 INLLD-----------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPM 299 (653)
Q Consensus 233 i~~l~-----------~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLld--Rf~~~v~l~~p~ 299 (653)
|+.|- ..++|.||.-|+-.. +|- .+.|||+|| .+..++|++|+ ||+..++|.. +
T Consensus 613 iDaL~p~R~~~~s~~s~RvvNqLLtElDGl~---~R~--------gV~viaATN-RPDiIDpAiLRPGRlDk~LyV~l-P 679 (802)
T KOG0733|consen 613 IDALVPRRSDEGSSVSSRVVNQLLTELDGLE---ERR--------GVYVIAATN-RPDIIDPAILRPGRLDKLLYVGL-P 679 (802)
T ss_pred hhhcCcccCCCCchhHHHHHHHHHHHhcccc---ccc--------ceEEEeecC-CCcccchhhcCCCccCceeeecC-C
Confidence 99873 468899999988432 222 468999999 88888999997 9999999995 5
Q ss_pred CHhhHHHHHHHH
Q 006254 300 TFEDRVAAVGIA 311 (653)
Q Consensus 300 ~~~~r~~I~~~~ 311 (653)
+.++|.+|++..
T Consensus 680 n~~eR~~ILK~~ 691 (802)
T KOG0733|consen 680 NAEERVAILKTI 691 (802)
T ss_pred CHHHHHHHHHHH
Confidence 899999998843
No 68
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=99.68 E-value=1.6e-15 Score=164.17 Aligned_cols=262 Identities=22% Similarity=0.227 Sum_probs=185.4
Q ss_pred ceechHHHHHHHHHhcccC------------CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccc
Q 006254 96 AVVGQDAIKTALLLGAIDR------------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWED 163 (653)
Q Consensus 96 ~IvGq~~~k~aL~~~av~p------------~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~ 163 (653)
.|.|++.+|+|+++.++.- +.-+||+.|.|.|+||.|.|++-+..|..
T Consensus 302 SI~GH~~vKkAillLLlGGvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplA-------------------- 361 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLLLGGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLA-------------------- 361 (818)
T ss_pred ccccHHHHHHHHHHHHhccceeccCCCceeccceeEEEecCchHHHHHHHHHHHhccccc--------------------
Confidence 5899999999997766521 11239999999999999999999877620
Q ss_pred cccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHH
Q 006254 164 GLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNL 243 (653)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~ 243 (653)
+..| .+...=|-+....+.| -.+|++.++.|....|++||++|||++++++--.-+
T Consensus 362 -----I~TT--------GRGSSGVGLTAAVTtD-----------~eTGERRLEAGAMVLADRGVVCIDEFDKMsDiDRvA 417 (818)
T KOG0479|consen 362 -----IATT--------GRGSSGVGLTAAVTTD-----------QETGERRLEAGAMVLADRGVVCIDEFDKMSDIDRVA 417 (818)
T ss_pred -----cccc--------CCCCCCccceeEEeec-----------cccchhhhhcCceEEccCceEEehhcccccchhHHH
Confidence 0000 0011111122222211 235778888999999999999999999999999999
Q ss_pred HHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCC------------cccHHHHhhhcccccccCCCCHhhHHHHHHHH
Q 006254 244 LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG------------VVREHLLDRIAINLSADLPMTFEDRVAAVGIA 311 (653)
Q Consensus 244 Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg------------~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~ 311 (653)
+..+|+++.++|...|+..+..+++.+||+.||--| .|...||+||++.+.+..-.+.+.-..|-+.+
T Consensus 418 IHEVMEQqtVTIaKAGIHasLNARCSVlAAANPvyG~Yd~~k~P~eNIgLpDSLLSRFDLlFv~lD~~d~~~D~~iSeHV 497 (818)
T KOG0479|consen 418 IHEVMEQQTVTIAKAGIHASLNARCSVLAAANPVYGQYDQSKTPMENIGLPDSLLSRFDLLFVVLDDIDADIDRMISEHV 497 (818)
T ss_pred HHHHHhcceEEeEeccchhhhccceeeeeecCccccccCCCCChhhccCCcHHHHhhhcEEEEEeccccchHHHHHHHHH
Confidence 999999999999999999999999999999999433 37789999999976554333443333343332
Q ss_pred HHHH--hhhh---------------------------HHhhhhhh--------------hhhHHHHHHHHHHhhhcccCC
Q 006254 312 TQFQ--ERSN---------------------------EVFKMVEE--------------ETDLAKTQIILAREYLKDVAI 348 (653)
Q Consensus 312 ~~~~--~~~~---------------------------~~~~~~~~--------------~~~~l~~~i~~ar~~l~~v~i 348 (653)
+..- ..|. ..+.++.. ..+.+++.|..|+.... -.+
T Consensus 498 LRmHrY~~pg~~dGe~~~~g~~v~~~~~~~~e~~~et~v~ek~n~llhg~~k~~~~k~lti~F~rKYIhyAk~ri~-P~L 576 (818)
T KOG0479|consen 498 LRMHRYLTPGEEDGEPVPEGNGVEGLSTENMEDKKETEVFEKFNTLLHGKAKQQHEKLLTIDFMRKYIHYAKSRIK-PKL 576 (818)
T ss_pred HHHhhccCCcccCCCcccCCCcccccccccccccccchhHhhhhhhhhccccccccceeeHHHHHHHHHHHHhhcC-ccc
Confidence 2211 0010 00011100 01136678888887442 268
Q ss_pred CHHHHHHHHHHHHhc------------CCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHH
Q 006254 349 GREQLKYLVMEALRG------------GCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELV 402 (653)
Q Consensus 349 s~~~l~~l~~~~~~~------------~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~lv 402 (653)
++++.++|++....+ --.+.|-+..++|+|.|+|...-...|+.+|.+.|++|+
T Consensus 577 t~ea~e~Ia~~Y~~LR~~d~~~d~~rt~PiTARtLETlIRLaTAhAKaRlSk~V~~~DAe~A~~Ll 642 (818)
T KOG0479|consen 577 TQEAAEYIAEEYTDLRNDDSRKDQERTSPITARTLETLIRLATAHAKARLSKVVEKDDAEAAVNLL 642 (818)
T ss_pred cHHHHHHHHHHHhhhhccccccccccccCCcHHHHHHHHHHHHHHHHhhhcceeehhhHHHHHHHH
Confidence 999999999876543 124678899999999999999999999999999998765
No 69
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.68 E-value=4.7e-16 Score=169.18 Aligned_cols=218 Identities=24% Similarity=0.318 Sum_probs=140.3
Q ss_pred CceechHHHHHHHHHhcc-----------cC-------CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCC
Q 006254 95 AAVVGQDAIKTALLLGAI-----------DR-------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT 156 (653)
Q Consensus 95 ~~IvGq~~~k~aL~~~av-----------~p-------~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~ 156 (653)
..|+||+.+++.+..++. .+ ..++|||.||||||||++|++||..+.
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~--------------- 141 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN--------------- 141 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC---------------
Confidence 458999999999976541 11 246799999999999999999998763
Q ss_pred CCCcccccccccccccccccccccccCCCeEeCCCC-CcccceeeecchhhhhccCCccccccccccccCceEEeccccc
Q 006254 157 CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLG-VTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINL 235 (653)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~-~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~ 235 (653)
.||+.+... +++..++|. |.+..+. ......++.+..+.+||||||||+.
T Consensus 142 ---------------------------~pf~~~da~~L~~~gyvG~-d~e~~L~-~~~~~~~~~l~~a~~gIV~lDEIdk 192 (413)
T TIGR00382 142 ---------------------------VPFAIADATTLTEAGYVGE-DVENILL-KLLQAADYDVEKAQKGIIYIDEIDK 192 (413)
T ss_pred ---------------------------CCeEEechhhccccccccc-cHHHHHH-HHHHhCcccHHhcccceEEecccch
Confidence 445444332 233456664 3222221 1112345677788899999999999
Q ss_pred CCH--------------HHHHHHHHHHHcCceE-EeeCCeeEEee-cCcEEEEEecC---CCC-----------------
Q 006254 236 LDE--------------GISNLLLNVLTEGVNI-VEREGISFKHP-CKPLLIATYNP---EEG----------------- 279 (653)
Q Consensus 236 l~~--------------~~~~~Ll~~l~~g~~~-v~r~G~s~~~p-~~~~lIattNp---~eg----------------- 279 (653)
++. .+|+.||.+|+ |.+. +.+.|+ ..+| .++++|.|+|. +.|
T Consensus 193 l~~~~~~~s~~~dvsg~~vq~~LL~iLe-G~~~~v~~~~g-r~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~ 270 (413)
T TIGR00382 193 ISRKSENPSITRDVSGEGVQQALLKIIE-GTVANVPPQGG-RKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSS 270 (413)
T ss_pred hchhhccccccccccchhHHHHHHHHhh-ccceecccCCC-ccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhcc
Confidence 986 69999999995 6543 333333 2233 36888888886 111
Q ss_pred -----------------------------cccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhh
Q 006254 280 -----------------------------VVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETD 330 (653)
Q Consensus 280 -----------------------------~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~ 330 (653)
.|.|+|+.|++.++.+. |.+.+....|+..-..
T Consensus 271 ~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~-pL~~~~L~~Il~~~~n----------------- 332 (413)
T TIGR00382 271 IGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLE-KLDEEALIAILTKPKN----------------- 332 (413)
T ss_pred ccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecC-CCCHHHHHHHHHHHHH-----------------
Confidence 15577788888776666 6777777777653111
Q ss_pred HHHHHHHHH-HhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 006254 331 LAKTQIILA-REYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARV 377 (653)
Q Consensus 331 ~l~~~i~~a-r~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~ 377 (653)
.+..++... ...--.+.++++++++|++.+..... |.|..-.+++.
T Consensus 333 ~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~-GAR~Lr~iie~ 379 (413)
T TIGR00382 333 ALVKQYQALFKMDNVELDFEEEALKAIAKKALERKT-GARGLRSIVEG 379 (413)
T ss_pred HHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCC-CchHHHHHHHH
Confidence 011111111 11122478999999999998766544 67776666543
No 70
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.68 E-value=2.8e-16 Score=174.93 Aligned_cols=220 Identities=20% Similarity=0.231 Sum_probs=146.6
Q ss_pred CCCCCCceechHHHHHHHHHh--cc--------cCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCC
Q 006254 90 QFFPLAAVVGQDAIKTALLLG--AI--------DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPD 159 (653)
Q Consensus 90 ~~~~f~~IvGq~~~k~aL~~~--av--------~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~ 159 (653)
....|++|.|.+.+|..|... +. -+...||||+||||||||++|++|+..+
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~------------------- 283 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW------------------- 283 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh-------------------
Confidence 456799999999999877321 11 1245789999999999999999999976
Q ss_pred cccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCH-
Q 006254 160 EWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDE- 238 (653)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~- 238 (653)
+.+|+.+..+...+.++|.- ++.+. ..+. ......++|||||||+.+-.
T Consensus 284 -----------------------~~~~~~l~~~~l~~~~vGes--e~~l~---~~f~--~A~~~~P~IL~IDEID~~~~~ 333 (489)
T CHL00195 284 -----------------------QLPLLRLDVGKLFGGIVGES--ESRMR---QMIR--IAEALSPCILWIDEIDKAFSN 333 (489)
T ss_pred -----------------------CCCEEEEEhHHhcccccChH--HHHHH---HHHH--HHHhcCCcEEEehhhhhhhcc
Confidence 46788777665555566631 11110 0010 01122568999999986522
Q ss_pred -----------HHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHh--hhcccccccCCCCHhhHH
Q 006254 239 -----------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPMTFEDRV 305 (653)
Q Consensus 239 -----------~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLld--Rf~~~v~l~~p~~~~~r~ 305 (653)
.++..|+..|++.. ..+++||||| ....++++|++ ||+..++++.| +.++|.
T Consensus 334 ~~~~~d~~~~~rvl~~lL~~l~~~~-------------~~V~vIaTTN-~~~~Ld~allR~GRFD~~i~v~lP-~~~eR~ 398 (489)
T CHL00195 334 SESKGDSGTTNRVLATFITWLSEKK-------------SPVFVVATAN-NIDLLPLEILRKGRFDEIFFLDLP-SLEERE 398 (489)
T ss_pred ccCCCCchHHHHHHHHHHHHHhcCC-------------CceEEEEecC-ChhhCCHHHhCCCcCCeEEEeCCc-CHHHHH
Confidence 24456677676432 2578999999 78889999997 99999999965 889999
Q ss_pred HHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHc
Q 006254 306 AAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALE 385 (653)
Q Consensus 306 ~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~ 385 (653)
+|++....- ..+ -...+..++.+++.+.. .+......++.-|...|..+
T Consensus 399 ~Il~~~l~~---------------------------~~~-~~~~~~dl~~La~~T~G---fSGAdI~~lv~eA~~~A~~~ 447 (489)
T CHL00195 399 KIFKIHLQK---------------------------FRP-KSWKKYDIKKLSKLSNK---FSGAEIEQSIIEAMYIAFYE 447 (489)
T ss_pred HHHHHHHhh---------------------------cCC-CcccccCHHHHHhhcCC---CCHHHHHHHHHHHHHHHHHc
Confidence 998743211 000 01122334556555433 35556666777777677666
Q ss_pred CCCCccHHHHHHHHHHHcCC
Q 006254 386 GREKVNVDDLKKAVELVILP 405 (653)
Q Consensus 386 gr~~Vt~eDv~~A~~lvl~h 405 (653)
++ .++.+|+..|+.-+.+.
T Consensus 448 ~~-~lt~~dl~~a~~~~~Pl 466 (489)
T CHL00195 448 KR-EFTTDDILLALKQFIPL 466 (489)
T ss_pred CC-CcCHHHHHHHHHhcCCC
Confidence 65 68999999999866654
No 71
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.67 E-value=3.8e-16 Score=176.02 Aligned_cols=217 Identities=21% Similarity=0.273 Sum_probs=142.6
Q ss_pred CCCCCCCceechHHHHHHHHHhc---cc---------CCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCC
Q 006254 89 RQFFPLAAVVGQDAIKTALLLGA---ID---------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT 156 (653)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~~~a---v~---------p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~ 156 (653)
.+.+.|++|+|++.+|..+...+ .+ +...|+||+||||||||++|++|+..+
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---------------- 112 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---------------- 112 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc----------------
Confidence 45678999999999988773211 11 234579999999999999999999876
Q ss_pred CCCcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccc---cCceEEeccc
Q 006254 157 CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEI 233 (653)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~IDEi 233 (653)
+.+|+.++.....+.+.|. +... ...+|..| .++|||||||
T Consensus 113 --------------------------~~~~~~i~~~~~~~~~~g~---------~~~~-l~~~f~~a~~~~p~Il~iDEi 156 (495)
T TIGR01241 113 --------------------------GVPFFSISGSDFVEMFVGV---------GASR-VRDLFEQAKKNAPCIIFIDEI 156 (495)
T ss_pred --------------------------CCCeeeccHHHHHHHHhcc---------cHHH-HHHHHHHHHhcCCCEEEEech
Confidence 3566666544333333332 1000 01123332 3579999999
Q ss_pred ccCCH--------------HHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHh--hhcccccccC
Q 006254 234 NLLDE--------------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADL 297 (653)
Q Consensus 234 ~~l~~--------------~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLld--Rf~~~v~l~~ 297 (653)
+.+.. .+++.||..|+.-. . ...++||+||| .+..++++|++ ||+..|.++.
T Consensus 157 d~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~---~--------~~~v~vI~aTn-~~~~ld~al~r~gRfd~~i~i~~ 224 (495)
T TIGR01241 157 DAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG---T--------NTGVIVIAATN-RPDVLDPALLRPGRFDRQVVVDL 224 (495)
T ss_pred hhhhhccccCcCCccHHHHHHHHHHHhhhcccc---C--------CCCeEEEEecC-ChhhcCHHHhcCCcceEEEEcCC
Confidence 88632 34556666664211 1 12478999999 67788999997 9999999995
Q ss_pred CCCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCC-CHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 006254 298 PMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAI-GREQLKYLVMEALRGGCQGHRAELYAAR 376 (653)
Q Consensus 298 p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~i-s~~~l~~l~~~~~~~~i~s~R~~i~llr 376 (653)
++.++|.+|++.... +..+ ++..+..++..+ ...+.+....+++
T Consensus 225 -Pd~~~R~~il~~~l~-------------------------------~~~~~~~~~l~~la~~t---~G~sgadl~~l~~ 269 (495)
T TIGR01241 225 -PDIKGREEILKVHAK-------------------------------NKKLAPDVDLKAVARRT---PGFSGADLANLLN 269 (495)
T ss_pred -CCHHHHHHHHHHHHh-------------------------------cCCCCcchhHHHHHHhC---CCCCHHHHHHHHH
Confidence 588999998764211 1111 122233444333 3335556666777
Q ss_pred HHHHHHHHcCCCCccHHHHHHHHHHHcC
Q 006254 377 VAKCLAALEGREKVNVDDLKKAVELVIL 404 (653)
Q Consensus 377 ~Ara~Aal~gr~~Vt~eDv~~A~~lvl~ 404 (653)
-|...|.-.++..|+.+|+.+|+..+..
T Consensus 270 eA~~~a~~~~~~~i~~~~l~~a~~~~~~ 297 (495)
T TIGR01241 270 EAALLAARKNKTEITMNDIEEAIDRVIA 297 (495)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHhc
Confidence 6766777788889999999999986654
No 72
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.67 E-value=4.2e-16 Score=169.91 Aligned_cols=221 Identities=16% Similarity=0.218 Sum_probs=144.1
Q ss_pred CCCCCCCCceechHHHHHHHHHhcc----cC---------CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCC
Q 006254 88 GRQFFPLAAVVGQDAIKTALLLGAI----DR---------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANAD 154 (653)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~~~av----~p---------~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~ 154 (653)
+.+.++|++|.|.+..|+.|..+.. +| ...||||+||||||||++|++++..+.
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~------------- 204 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT------------- 204 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC-------------
Confidence 4567899999999998887743222 11 246799999999999999999999763
Q ss_pred CCCCCcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCcccccccccc---ccCceEEec
Q 006254 155 PTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAE---AHRGVLYID 231 (653)
Q Consensus 155 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~---A~~giL~ID 231 (653)
.+|+.+........++|. +.... ..+|.. ..++|||||
T Consensus 205 -----------------------------~~fi~i~~s~l~~k~~ge---------~~~~l-r~lf~~A~~~~P~ILfID 245 (398)
T PTZ00454 205 -----------------------------ATFIRVVGSEFVQKYLGE---------GPRMV-RDVFRLARENAPSIIFID 245 (398)
T ss_pred -----------------------------CCEEEEehHHHHHHhcch---------hHHHH-HHHHHHHHhcCCeEEEEE
Confidence 445555433333344442 11000 011222 246799999
Q ss_pred ccccCC-----------HHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHh--hhcccccccCC
Q 006254 232 EINLLD-----------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLP 298 (653)
Q Consensus 232 Ei~~l~-----------~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLld--Rf~~~v~l~~p 298 (653)
||+.+. ..++..+...+..-. |.. ...++.+|+||| ....++++|++ ||+..|+++.
T Consensus 246 EID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld------~~~--~~~~v~VI~aTN-~~d~LDpAllR~GRfd~~I~~~~- 315 (398)
T PTZ00454 246 EVDSIATKRFDAQTGADREVQRILLELLNQMD------GFD--QTTNVKVIMATN-RADTLDPALLRPGRLDRKIEFPL- 315 (398)
T ss_pred CHhhhccccccccCCccHHHHHHHHHHHHHhh------ccC--CCCCEEEEEecC-CchhCCHHHcCCCcccEEEEeCC-
Confidence 999762 234445555443211 110 112578999999 67799999998 9999999985
Q ss_pred CCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHH-HHHHHHHHHHhcCCCCcchHHHHHHH
Q 006254 299 MTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGRE-QLKYLVMEALRGGCQGHRAELYAARV 377 (653)
Q Consensus 299 ~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~-~l~~l~~~~~~~~i~s~R~~i~llr~ 377 (653)
++.++|.+|++.... ...+..+ -+..++.. ....+.+....+++.
T Consensus 316 P~~~~R~~Il~~~~~-------------------------------~~~l~~dvd~~~la~~---t~g~sgaDI~~l~~e 361 (398)
T PTZ00454 316 PDRRQKRLIFQTITS-------------------------------KMNLSEEVDLEDFVSR---PEKISAADIAAICQE 361 (398)
T ss_pred cCHHHHHHHHHHHHh-------------------------------cCCCCcccCHHHHHHH---cCCCCHHHHHHHHHH
Confidence 588889888763211 1111111 12334333 223356667778888
Q ss_pred HHHHHHHcCCCCccHHHHHHHHHHHcC
Q 006254 378 AKCLAALEGREKVNVDDLKKAVELVIL 404 (653)
Q Consensus 378 Ara~Aal~gr~~Vt~eDv~~A~~lvl~ 404 (653)
|.-.|.-+++..|+.+|+.+|+..+..
T Consensus 362 A~~~A~r~~~~~i~~~df~~A~~~v~~ 388 (398)
T PTZ00454 362 AGMQAVRKNRYVILPKDFEKGYKTVVR 388 (398)
T ss_pred HHHHHHHcCCCccCHHHHHHHHHHHHh
Confidence 888888889999999999999998754
No 73
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.66 E-value=1.4e-15 Score=172.72 Aligned_cols=232 Identities=18% Similarity=0.184 Sum_probs=141.8
Q ss_pred ccCCCCCCCCceechHHHHHHHHHhcccCCCce-EEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccc
Q 006254 86 SYGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDG 164 (653)
Q Consensus 86 ~~~~~~~~f~~IvGq~~~k~aL~~~av~p~~~g-VLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~ 164 (653)
..|+++..|++||||+++++.|.-.+......+ +||+|++|||||++|+.|++.+. |........|..
T Consensus 7 arKYRPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLn-----------Ce~~~~~~PCG~ 75 (830)
T PRK07003 7 ARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALN-----------CETGVTSQPCGV 75 (830)
T ss_pred HHHhCCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-----------CccCCCCCCCcc
Confidence 346789999999999999999976554444444 69999999999999999999873 432222223333
Q ss_pred ccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHH
Q 006254 165 LDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLL 244 (653)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~L 244 (653)
|.......... ...|+++.... . .|.-++..-+..- .+.+ ...+..|+||||++.|+.+.+|.|
T Consensus 76 C~sCr~I~~G~-------h~DviEIDAas--~--rgVDdIReLIe~a--~~~P---~~gr~KVIIIDEah~LT~~A~NAL 139 (830)
T PRK07003 76 CRACREIDEGR-------FVDYVEMDAAS--N--RGVDEMAALLERA--VYAP---VDARFKVYMIDEVHMLTNHAFNAM 139 (830)
T ss_pred cHHHHHHhcCC-------CceEEEecccc--c--ccHHHHHHHHHHH--Hhcc---ccCCceEEEEeChhhCCHHHHHHH
Confidence 33322111100 12244443321 1 1211221111100 0111 123456999999999999999999
Q ss_pred HHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhh
Q 006254 245 LNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKM 324 (653)
Q Consensus 245 l~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~ 324 (653)
|..|++-. .++.||.+|| +...|.+.|++||..+ .+. +...++..+.++.+..
T Consensus 140 LKtLEEPP-------------~~v~FILaTt-d~~KIp~TIrSRCq~f-~Fk-~Ls~eeIv~~L~~Il~----------- 192 (830)
T PRK07003 140 LKTLEEPP-------------PHVKFILATT-DPQKIPVTVLSRCLQF-NLK-QMPAGHIVSHLERILG----------- 192 (830)
T ss_pred HHHHHhcC-------------CCeEEEEEEC-ChhhccchhhhheEEE-ecC-CcCHHHHHHHHHHHHH-----------
Confidence 99999742 3467788888 6778889999999655 776 4455544444332111
Q ss_pred hhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHH
Q 006254 325 VEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKK 397 (653)
Q Consensus 325 ~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~ 397 (653)
..++.++++.+..|+..+.. +.|..++++..+.++ +...|+.++|..
T Consensus 193 ------------------~EgI~id~eAL~lIA~~A~G----smRdALsLLdQAia~----~~~~It~~~V~~ 239 (830)
T PRK07003 193 ------------------EERIAFEPQALRLLARAAQG----SMRDALSLTDQAIAY----SANEVTETAVSG 239 (830)
T ss_pred ------------------HcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHHHHh----ccCCcCHHHHHH
Confidence 12467888888888776532 478888876554432 223466655543
No 74
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=99.66 E-value=8.2e-16 Score=167.51 Aligned_cols=266 Identities=18% Similarity=0.205 Sum_probs=187.4
Q ss_pred ceechHHHHHHHHHhccc-----CCC-------ceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccc
Q 006254 96 AVVGQDAIKTALLLGAID-----REI-------GGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWED 163 (653)
Q Consensus 96 ~IvGq~~~k~aL~~~av~-----p~~-------~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~ 163 (653)
.|.|++.+|+|+.++++. |+. -+|||.|.||||||.+.|.+.+..++
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~R--------------------- 508 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPR--------------------- 508 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcc---------------------
Confidence 588999999999877662 222 23999999999999999999998763
Q ss_pred cccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHH
Q 006254 164 GLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNL 243 (653)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~ 243 (653)
.++.-..+++.-.|.-++ .+.--++++.++.|.|..|++||.+|||++.++++--..
T Consensus 509 ---------------------AV~tTGqGASavGLTa~v--~KdPvtrEWTLEaGALVLADkGvClIDEFDKMndqDRtS 565 (854)
T KOG0477|consen 509 ---------------------AVFTTGQGASAVGLTAYV--RKDPVTREWTLEAGALVLADKGVCLIDEFDKMNDQDRTS 565 (854)
T ss_pred ---------------------eeEeccCCccccceeEEE--eeCCccceeeeccCeEEEccCceEEeehhhhhcccccch
Confidence 222223333333333322 233334667788899999999999999999999999999
Q ss_pred HHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCC------------cccHHHHhhhcccccccCCCCHhhHHHHHHHH
Q 006254 244 LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG------------VVREHLLDRIAINLSADLPMTFEDRVAAVGIA 311 (653)
Q Consensus 244 Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg------------~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~ 311 (653)
+..+|++..+.|...|+..+..++..+|||.||-.| .|.+++++||++.+.+..-.++.+-+.+.+.+
T Consensus 566 IHEAMEQQSISISKAGIVtsLqArctvIAAanPigGRY~~s~tFaqNV~ltePIlSRFDiLcVvkD~vd~~~De~lA~fV 645 (854)
T KOG0477|consen 566 IHEAMEQQSISISKAGIVTSLQARCTVIAAANPIGGRYNPSLTFAQNVDLTEPILSRFDILCVVKDTVDPVQDEKLAKFV 645 (854)
T ss_pred HHHHHHhcchhhhhhhHHHHHHhhhhhheecCCCCCccCCccchhhccccccchhhhcceeeeeecccCchhHHHHHHHH
Confidence 999999999999999999999999999999999543 47789999999988887544554444343332
Q ss_pred H--HHHhhhhHH----------hhh-hhhhhhHHHHHHHHHHhhhc-cc-CCCHHHHH-HHHHHHH---hcC--CCCcch
Q 006254 312 T--QFQERSNEV----------FKM-VEEETDLAKTQIILAREYLK-DV-AIGREQLK-YLVMEAL---RGG--CQGHRA 370 (653)
Q Consensus 312 ~--~~~~~~~~~----------~~~-~~~~~~~l~~~i~~ar~~l~-~v-~is~~~l~-~l~~~~~---~~~--i~s~R~ 370 (653)
. ++...|... ..+ -...++.|++.|..|+.... .+ .++.+-+. ..+++-. ..| -.+.|-
T Consensus 646 V~Sh~r~hp~~~~~~~~~e~~~~~~v~~ipq~lLrkyI~yar~~v~PkL~q~d~~K~s~vya~lRkES~~tGs~piTvRH 725 (854)
T KOG0477|consen 646 VGSHVRHHPSNKEEDGLEEPQMPARVEPIPQELLRKYIIYAREKVRPKLNQMDMDKISSVYADLRKESMATGSLPITVRH 725 (854)
T ss_pred HHhHhhcCCcccccCcccccccccccccChHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhhccccCCchhhHHH
Confidence 1 222222210 000 11345678888888887642 11 23222222 2222211 122 136799
Q ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHcCC
Q 006254 371 ELYAARVAKCLAALEGREKVNVDDLKKAVELVILP 405 (653)
Q Consensus 371 ~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~h 405 (653)
...++|++.|+|.+.-+++|+.+|+..|+..++-.
T Consensus 726 ieS~ir~seAhArm~Lr~~V~~~d~~~AI~v~ldS 760 (854)
T KOG0477|consen 726 IESMIRMSEAHARMHLREYVTEEDVDMAIRVMLDS 760 (854)
T ss_pred HHHHHHHHHHHHHHHHHhhccHhHHHHHHHHHHHH
Confidence 99999999999999999999999999999877753
No 75
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=1.3e-15 Score=167.22 Aligned_cols=236 Identities=20% Similarity=0.179 Sum_probs=147.9
Q ss_pred cccCCCCCCCCceechHHHHHHHHHhcccCCCce-EEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccc
Q 006254 85 DSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWED 163 (653)
Q Consensus 85 ~~~~~~~~~f~~IvGq~~~k~aL~~~av~p~~~g-VLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~ 163 (653)
...+.+|..|++|+||++++..|..++.....++ +||+||+|||||++|+.+++.+. |.......+|.
T Consensus 8 L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Ln-----------ce~~~~~~pCg 76 (484)
T PRK14956 8 LSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLN-----------CENPIGNEPCN 76 (484)
T ss_pred hHHHhCCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------cccccCccccC
Confidence 3346788999999999999999876665555555 89999999999999999999874 43222223344
Q ss_pred cccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHH
Q 006254 164 GLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNL 243 (653)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~ 243 (653)
.|......... ....|+.+..... .|.-++ +.+.+.. ...+ .....-|+||||++.|+.+.+++
T Consensus 77 ~C~sC~~i~~g-------~~~dviEIdaas~----~gVd~I-ReL~e~l-~~~p---~~g~~KV~IIDEah~Ls~~A~NA 140 (484)
T PRK14956 77 ECTSCLEITKG-------ISSDVLEIDAASN----RGIENI-RELRDNV-KFAP---MGGKYKVYIIDEVHMLTDQSFNA 140 (484)
T ss_pred CCcHHHHHHcc-------CCccceeechhhc----ccHHHH-HHHHHHH-Hhhh---hcCCCEEEEEechhhcCHHHHHH
Confidence 33331111000 1123444432110 111111 1111100 0001 11123499999999999999999
Q ss_pred HHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhh
Q 006254 244 LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFK 323 (653)
Q Consensus 244 Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~ 323 (653)
||..|++- |..+++|.+|| +...+.+.+++|+..+ .+. +.+.++..+.++.
T Consensus 141 LLKtLEEP-------------p~~viFILaTt-e~~kI~~TI~SRCq~~-~f~-~ls~~~i~~~L~~------------- 191 (484)
T PRK14956 141 LLKTLEEP-------------PAHIVFILATT-EFHKIPETILSRCQDF-IFK-KVPLSVLQDYSEK------------- 191 (484)
T ss_pred HHHHhhcC-------------CCceEEEeecC-ChhhccHHHHhhhhee-eec-CCCHHHHHHHHHH-------------
Confidence 99999863 23567787877 6778899999998665 665 4444433322221
Q ss_pred hhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHHH
Q 006254 324 MVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (653)
Q Consensus 324 ~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~ 400 (653)
+.. ..++.++++++..|++.+. + +.|.++.++..+-+. . ...|+.++|.+++.
T Consensus 192 ------------i~~----~Egi~~e~eAL~~Ia~~S~---G-d~RdAL~lLeq~i~~---~-~~~it~~~V~~~lg 244 (484)
T PRK14956 192 ------------LCK----IENVQYDQEGLFWIAKKGD---G-SVRDMLSFMEQAIVF---T-DSKLTGVKIRKMIG 244 (484)
T ss_pred ------------HHH----HcCCCCCHHHHHHHHHHcC---C-hHHHHHHHHHHHHHh---C-CCCcCHHHHHHHhC
Confidence 111 1347899999999987653 2 589999998654432 2 23699999988764
No 76
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.66 E-value=5e-16 Score=170.51 Aligned_cols=224 Identities=19% Similarity=0.229 Sum_probs=144.6
Q ss_pred CCCCCCCCceechHHHHHHHHHhcc----cC---------CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCC
Q 006254 88 GRQFFPLAAVVGQDAIKTALLLGAI----DR---------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANAD 154 (653)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~~~av----~p---------~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~ 154 (653)
+.+...|++|.|.+..++.|..+.. .| ...+|||+||||||||++|++++..+.
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~------------- 242 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS------------- 242 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC-------------
Confidence 3456789999999998887733221 11 235799999999999999999999763
Q ss_pred CCCCCcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccc---cCceEEec
Q 006254 155 PTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYID 231 (653)
Q Consensus 155 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~ID 231 (653)
.+|+.+..+...+.++|. +. .....+|..| .+.|||||
T Consensus 243 -----------------------------~~fi~V~~seL~~k~~Ge---------~~-~~vr~lF~~A~~~~P~ILfID 283 (438)
T PTZ00361 243 -----------------------------ATFLRVVGSELIQKYLGD---------GP-KLVRELFRVAEENAPSIVFID 283 (438)
T ss_pred -----------------------------CCEEEEecchhhhhhcch---------HH-HHHHHHHHHHHhCCCcEEeHH
Confidence 345554433323334442 11 0111223222 35799999
Q ss_pred ccccCC-----------HHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHh--hhcccccccCC
Q 006254 232 EINLLD-----------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLP 298 (653)
Q Consensus 232 Ei~~l~-----------~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLld--Rf~~~v~l~~p 298 (653)
||+.+. .+++..++..+..-. |.. ...++.||+||| ....++++|++ ||+..|.++ +
T Consensus 284 EID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ld------g~~--~~~~V~VI~ATN-r~d~LDpaLlRpGRfd~~I~~~-~ 353 (438)
T PTZ00361 284 EIDAIGTKRYDATSGGEKEIQRTMLELLNQLD------GFD--SRGDVKVIMATN-RIESLDPALIRPGRIDRKIEFP-N 353 (438)
T ss_pred HHHHHhccCCCCCCcccHHHHHHHHHHHHHHh------hhc--ccCCeEEEEecC-ChHHhhHHhccCCeeEEEEEeC-C
Confidence 998762 234555555543211 110 122578999999 67788999986 999999998 4
Q ss_pred CCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHH-HHHHHHHHHHhcCCCCcchHHHHHHH
Q 006254 299 MTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGRE-QLKYLVMEALRGGCQGHRAELYAARV 377 (653)
Q Consensus 299 ~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~-~l~~l~~~~~~~~i~s~R~~i~llr~ 377 (653)
++.++|.+|+..... ...+.++ -++.++..+..+ +......+++.
T Consensus 354 Pd~~~R~~Il~~~~~-------------------------------k~~l~~dvdl~~la~~t~g~---sgAdI~~i~~e 399 (438)
T PTZ00361 354 PDEKTKRRIFEIHTS-------------------------------KMTLAEDVDLEEFIMAKDEL---SGADIKAICTE 399 (438)
T ss_pred CCHHHHHHHHHHHHh-------------------------------cCCCCcCcCHHHHHHhcCCC---CHHHHHHHHHH
Confidence 689999999763211 1122222 133344333322 44555567777
Q ss_pred HHHHHHHcCCCCccHHHHHHHHHHHcCCCc
Q 006254 378 AKCLAALEGREKVNVDDLKKAVELVILPRS 407 (653)
Q Consensus 378 Ara~Aal~gr~~Vt~eDv~~A~~lvl~hR~ 407 (653)
|..+|.-+++..|+.+|+..|.+-|+..+.
T Consensus 400 A~~~Alr~~r~~Vt~~D~~~A~~~v~~~~~ 429 (438)
T PTZ00361 400 AGLLALRERRMKVTQADFRKAKEKVLYRKK 429 (438)
T ss_pred HHHHHHHhcCCccCHHHHHHHHHHHHhhcc
Confidence 888888889999999999999999876654
No 77
>CHL00176 ftsH cell division protein; Validated
Probab=99.65 E-value=8.3e-16 Score=176.16 Aligned_cols=217 Identities=18% Similarity=0.227 Sum_probs=144.0
Q ss_pred CCCCCCceechHHHHHHHHH--hcc-cC---------CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCC
Q 006254 90 QFFPLAAVVGQDAIKTALLL--GAI-DR---------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTC 157 (653)
Q Consensus 90 ~~~~f~~IvGq~~~k~aL~~--~av-~p---------~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~ 157 (653)
..++|++|+|.++++..+.. ..+ +| ...||||+||||||||++|++++..+
T Consensus 178 ~~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~----------------- 240 (638)
T CHL00176 178 TGITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA----------------- 240 (638)
T ss_pred CCCCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh-----------------
Confidence 45789999999999988722 111 12 23579999999999999999999875
Q ss_pred CCcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccc---cCceEEecccc
Q 006254 158 PDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEIN 234 (653)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~IDEi~ 234 (653)
..||+.+..+...+.+.|. +... ...+|..| .++|||||||+
T Consensus 241 -------------------------~~p~i~is~s~f~~~~~g~---------~~~~-vr~lF~~A~~~~P~ILfIDEID 285 (638)
T CHL00176 241 -------------------------EVPFFSISGSEFVEMFVGV---------GAAR-VRDLFKKAKENSPCIVFIDEID 285 (638)
T ss_pred -------------------------CCCeeeccHHHHHHHhhhh---------hHHH-HHHHHHHHhcCCCcEEEEecch
Confidence 3566666555433334442 1100 01123333 34699999999
Q ss_pred cCC-----------H---HHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHh--hhcccccccCC
Q 006254 235 LLD-----------E---GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLP 298 (653)
Q Consensus 235 ~l~-----------~---~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLld--Rf~~~v~l~~p 298 (653)
.+. + .+++.||..|+.-. ...+++||++|| ....++++|++ ||+..|.+..
T Consensus 286 ~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~-----------~~~~ViVIaaTN-~~~~LD~ALlRpGRFd~~I~v~l- 352 (638)
T CHL00176 286 AVGRQRGAGIGGGNDEREQTLNQLLTEMDGFK-----------GNKGVIVIAATN-RVDILDAALLRPGRFDRQITVSL- 352 (638)
T ss_pred hhhhcccCCCCCCcHHHHHHHHHHHhhhcccc-----------CCCCeeEEEecC-chHhhhhhhhccccCceEEEECC-
Confidence 873 2 23455555554211 122578999999 55578889986 8999999985
Q ss_pred CCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccC-CCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 006254 299 MTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVA-IGREQLKYLVMEALRGGCQGHRAELYAARV 377 (653)
Q Consensus 299 ~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~-is~~~l~~l~~~~~~~~i~s~R~~i~llr~ 377 (653)
|+.++|.+|++..... .. .++..+..++.. ....+.+....+++-
T Consensus 353 Pd~~~R~~IL~~~l~~-------------------------------~~~~~d~~l~~lA~~---t~G~sgaDL~~lvne 398 (638)
T CHL00176 353 PDREGRLDILKVHARN-------------------------------KKLSPDVSLELIARR---TPGFSGADLANLLNE 398 (638)
T ss_pred CCHHHHHHHHHHHHhh-------------------------------cccchhHHHHHHHhc---CCCCCHHHHHHHHHH
Confidence 5899999998742111 11 223334444433 333356777778887
Q ss_pred HHHHHHHcCCCCccHHHHHHHHHHHcCC
Q 006254 378 AKCLAALEGREKVNVDDLKKAVELVILP 405 (653)
Q Consensus 378 Ara~Aal~gr~~Vt~eDv~~A~~lvl~h 405 (653)
|...|+-.+...|+.+|+.+|+.-++..
T Consensus 399 Aal~a~r~~~~~It~~dl~~Ai~rv~~g 426 (638)
T CHL00176 399 AAILTARRKKATITMKEIDTAIDRVIAG 426 (638)
T ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHHhh
Confidence 7777888899999999999999876553
No 78
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.65 E-value=7.8e-16 Score=161.18 Aligned_cols=155 Identities=19% Similarity=0.258 Sum_probs=107.3
Q ss_pred ceechHHHHHHHHH--hc-----------ccC--CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCc
Q 006254 96 AVVGQDAIKTALLL--GA-----------IDR--EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDE 160 (653)
Q Consensus 96 ~IvGq~~~k~aL~~--~a-----------v~p--~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~ 160 (653)
.++|.+.+|+.+.. .. +.+ ...+|||+||||||||++|++++..+.....
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~--------------- 87 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGY--------------- 87 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCC---------------
Confidence 58999999998721 11 111 1347999999999999999999887642100
Q ss_pred ccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccC----
Q 006254 161 WEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLL---- 236 (653)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l---- 236 (653)
....+|+.+........++|.- .....+++.++.+|||||||++.|
T Consensus 88 --------------------~~~~~~v~v~~~~l~~~~~g~~----------~~~~~~~~~~a~~gvL~iDEi~~L~~~~ 137 (284)
T TIGR02880 88 --------------------VRKGHLVSVTRDDLVGQYIGHT----------APKTKEILKRAMGGVLFIDEAYYLYRPD 137 (284)
T ss_pred --------------------cccceEEEecHHHHhHhhcccc----------hHHHHHHHHHccCcEEEEechhhhccCC
Confidence 1134677666533333445521 011235778888999999999977
Q ss_pred -----CHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCC----cccHHHHhhhcccccccCCCCHhhHHHH
Q 006254 237 -----DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG----VVREHLLDRIAINLSADLPMTFEDRVAA 307 (653)
Q Consensus 237 -----~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg----~l~~aLldRf~~~v~l~~p~~~~~r~~I 307 (653)
+.++++.|+..|+++. .++++|++++++.- .+.|+|++||...|.++ |++.+++.+|
T Consensus 138 ~~~~~~~~~~~~Ll~~le~~~-------------~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp-~l~~edl~~I 203 (284)
T TIGR02880 138 NERDYGQEAIEILLQVMENQR-------------DDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFP-DYSEAELLVI 203 (284)
T ss_pred CccchHHHHHHHHHHHHhcCC-------------CCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeC-CcCHHHHHHH
Confidence 4678899999998764 25778888775421 35799999999998998 5677766666
Q ss_pred HH
Q 006254 308 VG 309 (653)
Q Consensus 308 ~~ 309 (653)
+.
T Consensus 204 ~~ 205 (284)
T TIGR02880 204 AG 205 (284)
T ss_pred HH
Confidence 55
No 79
>PHA02244 ATPase-like protein
Probab=99.64 E-value=7.5e-15 Score=155.88 Aligned_cols=133 Identities=18% Similarity=0.173 Sum_probs=102.0
Q ss_pred CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeEeCCCCCc
Q 006254 115 EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVT 194 (653)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~ 194 (653)
...+|||+||||||||++|++|+..+ +.||+.++....
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~l------------------------------------------g~pfv~In~l~d 155 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEAL------------------------------------------DLDFYFMNAIMD 155 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHh------------------------------------------CCCEEEEecChH
Confidence 46789999999999999999999976 356776664333
Q ss_pred ccceeeecchhhhhccCCcccccccccc--ccCceEEecccccCCHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEE
Q 006254 195 EDRLIGSVDVEESVKTGTTVFQPGLLAE--AHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIA 272 (653)
Q Consensus 195 ~~~l~G~~d~~~~~~~g~~~~~~Gll~~--A~~giL~IDEi~~l~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIa 272 (653)
...++|.++ +...+.+|.|.. +++|+||||||+.++++++..|+.+++.+. +...|..+..+.+|++|+
T Consensus 156 ~~~L~G~i~-------~~g~~~dgpLl~A~~~GgvLiLDEId~a~p~vq~~L~~lLd~r~--l~l~g~~i~~h~~FRlIA 226 (383)
T PHA02244 156 EFELKGFID-------ANGKFHETPFYEAFKKGGLFFIDEIDASIPEALIIINSAIANKF--FDFADERVTAHEDFRVIS 226 (383)
T ss_pred HHhhccccc-------ccccccchHHHHHhhcCCEEEEeCcCcCCHHHHHHHHHHhccCe--EEecCcEEecCCCEEEEE
Confidence 334555321 112455555544 489999999999999999999999999885 666677777777999999
Q ss_pred EecCCC----------CcccHHHHhhhcccccccCCC
Q 006254 273 TYNPEE----------GVVREHLLDRIAINLSADLPM 299 (653)
Q Consensus 273 ttNp~e----------g~l~~aLldRf~~~v~l~~p~ 299 (653)
|+|+.. ..+.++++|||-. |++.+|.
T Consensus 227 TsN~~~~G~~~~y~G~k~L~~AllDRFv~-I~~dyp~ 262 (383)
T PHA02244 227 AGNTLGKGADHIYVARNKIDGATLDRFAP-IEFDYDE 262 (383)
T ss_pred eeCCCccCcccccCCCcccCHHHHhhcEE-eeCCCCc
Confidence 999832 3588999999965 5888763
No 80
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.64 E-value=7.3e-16 Score=167.19 Aligned_cols=219 Identities=21% Similarity=0.263 Sum_probs=143.3
Q ss_pred CCCCCCCCceechHHHHHHHHHhcccC-------------CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCC
Q 006254 88 GRQFFPLAAVVGQDAIKTALLLGAIDR-------------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANAD 154 (653)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~~~av~p-------------~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~ 154 (653)
+.+.+.|++|.|.+..++.|......| ...||||+||||||||++|++++..+.
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~------------- 181 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN------------- 181 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC-------------
Confidence 456788999999999988885433222 135699999999999999999999774
Q ss_pred CCCCCcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccc---cCceEEec
Q 006254 155 PTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYID 231 (653)
Q Consensus 155 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~ID 231 (653)
.+|+.+........++|.- .. ....++..+ .++|||||
T Consensus 182 -----------------------------~~~~~v~~~~l~~~~~g~~---------~~-~i~~~f~~a~~~~p~il~iD 222 (364)
T TIGR01242 182 -----------------------------ATFIRVVGSELVRKYIGEG---------AR-LVREIFELAKEKAPSIIFID 222 (364)
T ss_pred -----------------------------CCEEecchHHHHHHhhhHH---------HH-HHHHHHHHHHhcCCcEEEhh
Confidence 3444443222222233320 00 011122222 35799999
Q ss_pred ccccC-----------CHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHh--hhcccccccCC
Q 006254 232 EINLL-----------DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLP 298 (653)
Q Consensus 232 Ei~~l-----------~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLld--Rf~~~v~l~~p 298 (653)
||+.+ +.+++..+...+..-. |. ....++.+|+||| ....+++++++ ||+..|.++.
T Consensus 223 EiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld------~~--~~~~~v~vI~ttn-~~~~ld~al~r~grfd~~i~v~~- 292 (364)
T TIGR01242 223 EIDAIAAKRTDSGTSGDREVQRTLMQLLAELD------GF--DPRGNVKVIAATN-RPDILDPALLRPGRFDRIIEVPL- 292 (364)
T ss_pred hhhhhccccccCCCCccHHHHHHHHHHHHHhh------CC--CCCCCEEEEEecC-ChhhCChhhcCcccCceEEEeCC-
Confidence 99987 3445566666654321 10 0122578999999 55678899986 9999999985
Q ss_pred CCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCH-HHHHHHHHHHHhcCCCCcchHHHHHHH
Q 006254 299 MTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGR-EQLKYLVMEALRGGCQGHRAELYAARV 377 (653)
Q Consensus 299 ~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~-~~l~~l~~~~~~~~i~s~R~~i~llr~ 377 (653)
++.++|.+|++.... ...+.+ --+..++..+. ..+.+....+++.
T Consensus 293 P~~~~r~~Il~~~~~-------------------------------~~~l~~~~~~~~la~~t~---g~sg~dl~~l~~~ 338 (364)
T TIGR01242 293 PDFEGRLEILKIHTR-------------------------------KMKLAEDVDLEAIAKMTE---GASGADLKAICTE 338 (364)
T ss_pred cCHHHHHHHHHHHHh-------------------------------cCCCCccCCHHHHHHHcC---CCCHHHHHHHHHH
Confidence 589999998763210 111111 11344554443 2355667778888
Q ss_pred HHHHHHHcCCCCccHHHHHHHHHHH
Q 006254 378 AKCLAALEGREKVNVDDLKKAVELV 402 (653)
Q Consensus 378 Ara~Aal~gr~~Vt~eDv~~A~~lv 402 (653)
|...|...++..|+.+|+.+|+.-+
T Consensus 339 A~~~a~~~~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 339 AGMFAIREERDYVTMDDFIKAVEKV 363 (364)
T ss_pred HHHHHHHhCCCccCHHHHHHHHHHh
Confidence 9999988999999999999998765
No 81
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=4.2e-15 Score=166.95 Aligned_cols=235 Identities=20% Similarity=0.187 Sum_probs=149.4
Q ss_pred ccCCCCCCCCceechHHHHHHHHHhcccCCCce-EEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccc
Q 006254 86 SYGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDG 164 (653)
Q Consensus 86 ~~~~~~~~f~~IvGq~~~k~aL~~~av~p~~~g-VLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~ 164 (653)
..+.+|..|++||||+++++.|.-++......+ +||+||+|||||++|+.+++.+ ||........|..
T Consensus 7 ~~kyRP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l-----------~c~~~~~~~pCg~ 75 (509)
T PRK14958 7 ARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCL-----------NCEKGVSANPCND 75 (509)
T ss_pred HHHHCCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHh-----------cCCCCCCcccCCC
Confidence 345788999999999999999977665555555 7999999999999999999987 4643333345555
Q ss_pred ccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHH
Q 006254 165 LDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLL 244 (653)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~L 244 (653)
|.......... ...++.+.... -.|.-|+..-+..-. +.| ......|+||||++.|+.+.+++|
T Consensus 76 C~~C~~i~~g~-------~~d~~eidaas----~~~v~~iR~l~~~~~--~~p---~~~~~kV~iIDE~~~ls~~a~naL 139 (509)
T PRK14958 76 CENCREIDEGR-------FPDLFEVDAAS----RTKVEDTRELLDNIP--YAP---TKGRFKVYLIDEVHMLSGHSFNAL 139 (509)
T ss_pred CHHHHHHhcCC-------CceEEEEcccc----cCCHHHHHHHHHHHh--hcc---ccCCcEEEEEEChHhcCHHHHHHH
Confidence 54322111111 12345454321 112112211111100 111 122346999999999999999999
Q ss_pred HHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhh
Q 006254 245 LNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKM 324 (653)
Q Consensus 245 l~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~ 324 (653)
|..|++- |..+.+|.+|| +...+.+.+++|+..+ .+. +.+.++..+.+..
T Consensus 140 Lk~LEep-------------p~~~~fIlatt-d~~kl~~tI~SRc~~~-~f~-~l~~~~i~~~l~~-------------- 189 (509)
T PRK14958 140 LKTLEEP-------------PSHVKFILATT-DHHKLPVTVLSRCLQF-HLA-QLPPLQIAAHCQH-------------- 189 (509)
T ss_pred HHHHhcc-------------CCCeEEEEEEC-ChHhchHHHHHHhhhh-hcC-CCCHHHHHHHHHH--------------
Confidence 9999974 23455666666 5667778899998555 676 4444432222211
Q ss_pred hhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHHH
Q 006254 325 VEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (653)
Q Consensus 325 ~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~ 400 (653)
+.. ..++.+++++++.|+..+. . ++|..+.++..+. + + |...|+.+||..++.
T Consensus 190 -----------il~----~egi~~~~~al~~ia~~s~---G-slR~al~lLdq~i--a-~-~~~~It~~~V~~~lg 242 (509)
T PRK14958 190 -----------LLK----EENVEFENAALDLLARAAN---G-SVRDALSLLDQSI--A-Y-GNGKVLIADVKTMLG 242 (509)
T ss_pred -----------HHH----HcCCCCCHHHHHHHHHHcC---C-cHHHHHHHHHHHH--h-c-CCCCcCHHHHHHHHC
Confidence 111 1257899999999987752 2 6899998885542 2 2 566899999988754
No 82
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.64 E-value=2.4e-15 Score=165.74 Aligned_cols=211 Identities=23% Similarity=0.281 Sum_probs=140.2
Q ss_pred cCCCCCCCCceechHHHHHH---HHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccc
Q 006254 87 YGRQFFPLAAVVGQDAIKTA---LLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWED 163 (653)
Q Consensus 87 ~~~~~~~f~~IvGq~~~k~a---L~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~ 163 (653)
.+.+|.+|+++|||+++... |...+-.....+++|+||||||||++|++|++.+.
T Consensus 4 ~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~---------------------- 61 (413)
T PRK13342 4 ERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATD---------------------- 61 (413)
T ss_pred hhhCCCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhC----------------------
Confidence 35678899999999988544 54333344557899999999999999999998763
Q ss_pred cccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHH
Q 006254 164 GLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNL 243 (653)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~ 243 (653)
.+|+.+..... |.-++...+..-.. ......+.|||||||++++...++.
T Consensus 62 --------------------~~~~~l~a~~~-----~~~~ir~ii~~~~~-----~~~~g~~~vL~IDEi~~l~~~~q~~ 111 (413)
T PRK13342 62 --------------------APFEALSAVTS-----GVKDLREVIEEARQ-----RRSAGRRTILFIDEIHRFNKAQQDA 111 (413)
T ss_pred --------------------CCEEEEecccc-----cHHHHHHHHHHHHH-----hhhcCCceEEEEechhhhCHHHHHH
Confidence 34444433211 11111111100000 0011246799999999999999999
Q ss_pred HHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCC-CcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHh
Q 006254 244 LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE-GVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVF 322 (653)
Q Consensus 244 Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e-g~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~ 322 (653)
|+..++++. +++|++++..+ ..+.++|++||..+ .+. |++.++...++......
T Consensus 112 LL~~le~~~---------------iilI~att~n~~~~l~~aL~SR~~~~-~~~-~ls~e~i~~lL~~~l~~-------- 166 (413)
T PRK13342 112 LLPHVEDGT---------------ITLIGATTENPSFEVNPALLSRAQVF-ELK-PLSEEDIEQLLKRALED-------- 166 (413)
T ss_pred HHHHhhcCc---------------EEEEEeCCCChhhhccHHHhccceee-EeC-CCCHHHHHHHHHHHHHH--------
Confidence 999998764 46777765443 46889999999554 776 55666555554422110
Q ss_pred hhhhhhhhHHHHHHHHHHhhhcc-cCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHHHH
Q 006254 323 KMVEEETDLAKTQIILAREYLKD-VAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVEL 401 (653)
Q Consensus 323 ~~~~~~~~~l~~~i~~ar~~l~~-v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~l 401 (653)
.. .. +.+++++++.|++++ .+ ..|..++++..+... ...|+.+++..++..
T Consensus 167 -----------------~~--~~~i~i~~~al~~l~~~s-~G---d~R~aln~Le~~~~~-----~~~It~~~v~~~~~~ 218 (413)
T PRK13342 167 -----------------KE--RGLVELDDEALDALARLA-NG---DARRALNLLELAALG-----VDSITLELLEEALQK 218 (413)
T ss_pred -----------------hh--cCCCCCCHHHHHHHHHhC-CC---CHHHHHHHHHHHHHc-----cCCCCHHHHHHHHhh
Confidence 00 12 479999999998876 22 478888888765543 457999999998875
Q ss_pred H
Q 006254 402 V 402 (653)
Q Consensus 402 v 402 (653)
.
T Consensus 219 ~ 219 (413)
T PRK13342 219 R 219 (413)
T ss_pred h
Confidence 3
No 83
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.63 E-value=8.7e-15 Score=151.43 Aligned_cols=134 Identities=27% Similarity=0.380 Sum_probs=111.4
Q ss_pred CceEEecccccCCHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCC-----------CCcccHHHHhhhcccc
Q 006254 225 RGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE-----------EGVVREHLLDRIAINL 293 (653)
Q Consensus 225 ~giL~IDEi~~l~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~-----------eg~l~~aLldRf~~~v 293 (653)
+|||||||+|.|+-+....|..+|++.. --++|.+||.. +.-++.+|+||+-++
T Consensus 292 pGVLFIDEvHmLDIE~FsFlnrAlEse~--------------aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII- 356 (450)
T COG1224 292 PGVLFIDEVHMLDIECFSFLNRALESEL--------------APIIILATNRGMTKIRGTDIESPHGIPLDLLDRLLII- 356 (450)
T ss_pred cceEEEechhhhhHHHHHHHHHHhhccc--------------CcEEEEEcCCceeeecccCCcCCCCCCHhhhhheeEE-
Confidence 6999999999999999999999999865 23677888862 235778999998655
Q ss_pred cccCCCCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHH
Q 006254 294 SADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELY 373 (653)
Q Consensus 294 ~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~ 373 (653)
... |++.++..+|++++ ..-.++.++++++++|+.+-... |+|-.+.
T Consensus 357 ~t~-py~~~EireIi~iR-----------------------------a~ee~i~l~~~Ale~L~~ig~et---SLRYa~q 403 (450)
T COG1224 357 STR-PYSREEIREIIRIR-----------------------------AKEEDIELSDDALEYLTDIGEET---SLRYAVQ 403 (450)
T ss_pred ecC-CCCHHHHHHHHHHh-----------------------------hhhhccccCHHHHHHHHhhchhh---hHHHHHH
Confidence 555 88998888887643 33346889999999999886655 8899999
Q ss_pred HHHHHHHHHHHcCCCCccHHHHHHHHHHHcCCC
Q 006254 374 AARVAKCLAALEGREKVNVDDLKKAVELVILPR 406 (653)
Q Consensus 374 llr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~hR 406 (653)
++.-|.-+|...|+..|..+||++|.++-+--.
T Consensus 404 LL~pa~iiA~~rg~~~V~~~dVe~a~~lF~D~k 436 (450)
T COG1224 404 LLTPASIIAKRRGSKRVEVEDVERAKELFLDVK 436 (450)
T ss_pred hccHHHHHHHHhCCCeeehhHHHHHHHHHhhHH
Confidence 999999999999999999999999999876543
No 84
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=7.4e-15 Score=165.44 Aligned_cols=233 Identities=18% Similarity=0.205 Sum_probs=146.6
Q ss_pred ccCCCCCCCCceechHHHHHHHHHhcccCCC-ceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccc
Q 006254 86 SYGRQFFPLAAVVGQDAIKTALLLGAIDREI-GGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDG 164 (653)
Q Consensus 86 ~~~~~~~~f~~IvGq~~~k~aL~~~av~p~~-~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~ 164 (653)
..+.+|..|++|+||+.+++.|.-++..... +.+||+||+|||||++|+++++.+ ||........|..
T Consensus 6 arKyRPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~L-----------nC~~~~~~~pCg~ 74 (702)
T PRK14960 6 ARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCL-----------NCETGVTSTPCEV 74 (702)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh-----------CCCcCCCCCCCcc
Confidence 3457889999999999999999665554433 457999999999999999999987 4543333334554
Q ss_pred ccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHH
Q 006254 165 LDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLL 244 (653)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~L 244 (653)
|......... ....++.+..... .|.-++...+.... +.| ......|+||||++.|+.+.++.|
T Consensus 75 C~sC~~I~~g-------~hpDviEIDAAs~----~~VddIReli~~~~--y~P---~~gk~KV~IIDEVh~LS~~A~NAL 138 (702)
T PRK14960 75 CATCKAVNEG-------RFIDLIEIDAASR----TKVEDTRELLDNVP--YAP---TQGRFKVYLIDEVHMLSTHSFNAL 138 (702)
T ss_pred CHHHHHHhcC-------CCCceEEeccccc----CCHHHHHHHHHHHh--hhh---hcCCcEEEEEechHhcCHHHHHHH
Confidence 4432211111 1223454443211 11112222111111 111 112345999999999999999999
Q ss_pred HHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhh
Q 006254 245 LNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKM 324 (653)
Q Consensus 245 l~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~ 324 (653)
+..|++.. ..+.+|.++| +...+.+.+++|+..+ .+. |.+.++..+.+..+
T Consensus 139 LKtLEEPP-------------~~v~FILaTt-d~~kIp~TIlSRCq~f-eFk-pLs~eEI~k~L~~I------------- 189 (702)
T PRK14960 139 LKTLEEPP-------------EHVKFLFATT-DPQKLPITVISRCLQF-TLR-PLAVDEITKHLGAI------------- 189 (702)
T ss_pred HHHHhcCC-------------CCcEEEEEEC-ChHhhhHHHHHhhhee-ecc-CCCHHHHHHHHHHH-------------
Confidence 99999742 2345666666 5667778999999655 777 55655444433321
Q ss_pred hhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHH
Q 006254 325 VEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKA 398 (653)
Q Consensus 325 ~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A 398 (653)
.. ...+.++++++..|+..+ ++ +.|..++++..+ ++. |...|+.++|...
T Consensus 190 ------------l~----kEgI~id~eAL~~IA~~S---~G-dLRdALnLLDQa--Iay--g~g~IT~edV~~l 239 (702)
T PRK14960 190 ------------LE----KEQIAADQDAIWQIAESA---QG-SLRDALSLTDQA--IAY--GQGAVHHQDVKEM 239 (702)
T ss_pred ------------HH----HcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHH--HHh--cCCCcCHHHHHHH
Confidence 11 125789999999887764 33 689999887543 332 5567888888664
No 85
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=3.8e-16 Score=157.67 Aligned_cols=161 Identities=22% Similarity=0.258 Sum_probs=120.7
Q ss_pred ccccCCCCCCCCceechHHHHHHHHHhcccCC------------CceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccc
Q 006254 84 QDSYGRQFFPLAAVVGQDAIKTALLLGAIDRE------------IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIA 151 (653)
Q Consensus 84 ~~~~~~~~~~f~~IvGq~~~k~aL~~~av~p~------------~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~ 151 (653)
.+..+.+.+.|++|.|.+.+|+||..+.+-|- -.|+||+||||||||.||++++...
T Consensus 122 AIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA----------- 190 (439)
T KOG0739|consen 122 AIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA----------- 190 (439)
T ss_pred hhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc-----------
Confidence 35666788999999999999999998888773 2469999999999999999999864
Q ss_pred cCCCCCCCcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccc---cCceE
Q 006254 152 NADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVL 228 (653)
Q Consensus 152 nc~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL 228 (653)
+..|+.++.+-..+.|+|.- ..+...+|+.| ...|+
T Consensus 191 -------------------------------nSTFFSvSSSDLvSKWmGES----------EkLVknLFemARe~kPSII 229 (439)
T KOG0739|consen 191 -------------------------------NSTFFSVSSSDLVSKWMGES----------EKLVKNLFEMARENKPSII 229 (439)
T ss_pred -------------------------------CCceEEeehHHHHHHHhccH----------HHHHHHHHHHHHhcCCcEE
Confidence 57899999998899999962 11222344443 46799
Q ss_pred EecccccCC-----------HHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccC
Q 006254 229 YIDEINLLD-----------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADL 297 (653)
Q Consensus 229 ~IDEi~~l~-----------~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~ 297 (653)
|||||+.|- ..+-.-+|--|+ |+ |. -...++++|+|| -++.|+.++++||..+|+|+.
T Consensus 230 FiDEiDslcg~r~enEseasRRIKTEfLVQMq-GV------G~---d~~gvLVLgATN-iPw~LDsAIRRRFekRIYIPL 298 (439)
T KOG0739|consen 230 FIDEIDSLCGSRSENESEASRRIKTEFLVQMQ-GV------GN---DNDGVLVLGATN-IPWVLDSAIRRRFEKRIYIPL 298 (439)
T ss_pred EeehhhhhccCCCCCchHHHHHHHHHHHHhhh-cc------cc---CCCceEEEecCC-CchhHHHHHHHHhhcceeccC
Confidence 999999772 223344444443 22 11 012468999999 999999999999999999987
Q ss_pred CCCHhhHHHHH
Q 006254 298 PMTFEDRVAAV 308 (653)
Q Consensus 298 p~~~~~r~~I~ 308 (653)
| ....|..+.
T Consensus 299 P-e~~AR~~MF 308 (439)
T KOG0739|consen 299 P-EAHARARMF 308 (439)
T ss_pred C-cHHHhhhhh
Confidence 5 555555443
No 86
>CHL00181 cbbX CbbX; Provisional
Probab=99.62 E-value=3.3e-15 Score=156.52 Aligned_cols=157 Identities=23% Similarity=0.246 Sum_probs=107.9
Q ss_pred CceechHHHHHHHH--Hhc--c---------c-C-CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCC
Q 006254 95 AAVVGQDAIKTALL--LGA--I---------D-R-EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPD 159 (653)
Q Consensus 95 ~~IvGq~~~k~aL~--~~a--v---------~-p-~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~ 159 (653)
.+++|.+.+|+.+. ++. + . + ...+|||+||||||||++|++++..+.....
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~-------------- 88 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGY-------------- 88 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCC--------------
Confidence 47999999999772 110 0 1 1 1335999999999999999999997631100
Q ss_pred cccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccC---
Q 006254 160 EWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLL--- 236 (653)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l--- 236 (653)
....+|+.++.......++|.- .....+++.+|.+|||||||++.+
T Consensus 89 ---------------------~~~~~~~~v~~~~l~~~~~g~~----------~~~~~~~l~~a~ggVLfIDE~~~l~~~ 137 (287)
T CHL00181 89 ---------------------IKKGHLLTVTRDDLVGQYIGHT----------APKTKEVLKKAMGGVLFIDEAYYLYKP 137 (287)
T ss_pred ---------------------CCCCceEEecHHHHHHHHhccc----------hHHHHHHHHHccCCEEEEEccchhccC
Confidence 1134566666433223344421 111235677788999999999986
Q ss_pred ------CHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCC----cccHHHHhhhcccccccCCCCHhhHHH
Q 006254 237 ------DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG----VVREHLLDRIAINLSADLPMTFEDRVA 306 (653)
Q Consensus 237 ------~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg----~l~~aLldRf~~~v~l~~p~~~~~r~~ 306 (653)
..+.++.|+..|+++. .++++|++++++.- .+.|+|.+||+..|.++ |++.+++.+
T Consensus 138 ~~~~~~~~e~~~~L~~~me~~~-------------~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~-~~t~~el~~ 203 (287)
T CHL00181 138 DNERDYGSEAIEILLQVMENQR-------------DDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFP-DYTPEELLQ 203 (287)
T ss_pred CCccchHHHHHHHHHHHHhcCC-------------CCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcC-CcCHHHHHH
Confidence 5678999999998753 24678888775331 34599999999999998 678888888
Q ss_pred HHHH
Q 006254 307 AVGI 310 (653)
Q Consensus 307 I~~~ 310 (653)
|+..
T Consensus 204 I~~~ 207 (287)
T CHL00181 204 IAKI 207 (287)
T ss_pred HHHH
Confidence 8764
No 87
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=7.1e-15 Score=165.19 Aligned_cols=231 Identities=19% Similarity=0.193 Sum_probs=137.9
Q ss_pred cCCCCCCCCceechHHHHHHHHHhcccCCCce-EEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCC-----CCc
Q 006254 87 YGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTC-----PDE 160 (653)
Q Consensus 87 ~~~~~~~f~~IvGq~~~k~aL~~~av~p~~~g-VLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~-----~~~ 160 (653)
.+.++..|++||||+++++.|.-++......| +||+||+|||||++|+.|++.+ ||...+ ...
T Consensus 8 rKYRPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaL-----------nC~~p~~~~g~~~~ 76 (700)
T PRK12323 8 RKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSL-----------NCTGADGEGGITAQ 76 (700)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHh-----------cCCCccccccCCCC
Confidence 35788999999999999999876555445555 6999999999999999999987 452110 111
Q ss_pred ccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHH
Q 006254 161 WEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGI 240 (653)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~ 240 (653)
.|..|......... ....|+.+.... -.|.-++..-+..- .+.+ ......|+||||++.|+.+.
T Consensus 77 PCG~C~sC~~I~aG-------~hpDviEIdAas----~~gVDdIReLie~~--~~~P---~~gr~KViIIDEah~Ls~~A 140 (700)
T PRK12323 77 PCGQCRACTEIDAG-------RFVDYIEMDAAS----NRGVDEMAQLLDKA--VYAP---TAGRFKVYMIDEVHMLTNHA 140 (700)
T ss_pred CCcccHHHHHHHcC-------CCCcceEecccc----cCCHHHHHHHHHHH--Hhch---hcCCceEEEEEChHhcCHHH
Confidence 23333221111110 112344444321 01211121111100 0111 12234599999999999999
Q ss_pred HHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhH
Q 006254 241 SNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNE 320 (653)
Q Consensus 241 ~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~ 320 (653)
+|.||..|++- |.+++||.+|| +...|.+.+++|+..+ .+. +.+.++..+.+..+
T Consensus 141 aNALLKTLEEP-------------P~~v~FILaTt-ep~kLlpTIrSRCq~f-~f~-~ls~eei~~~L~~I--------- 195 (700)
T PRK12323 141 FNAMLKTLEEP-------------PEHVKFILATT-DPQKIPVTVLSRCLQF-NLK-QMPPGHIVSHLDAI--------- 195 (700)
T ss_pred HHHHHHhhccC-------------CCCceEEEEeC-ChHhhhhHHHHHHHhc-ccC-CCChHHHHHHHHHH---------
Confidence 99999999873 23567777777 7788889999999665 776 34544433332211
Q ss_pred HhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHH
Q 006254 321 VFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKK 397 (653)
Q Consensus 321 ~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~ 397 (653)
.. ...+.+++++++.|+.++. . +.|..+.++..+- + .+...|+.++|..
T Consensus 196 ----------------l~----~Egi~~d~eAL~~IA~~A~---G-s~RdALsLLdQai--a--~~~~~It~~~V~~ 244 (700)
T PRK12323 196 ----------------LG----EEGIAHEVNALRLLAQAAQ---G-SMRDALSLTDQAI--A--YSAGNVSEEAVRG 244 (700)
T ss_pred ----------------HH----HcCCCCCHHHHHHHHHHcC---C-CHHHHHHHHHHHH--H--hccCCcCHHHHHH
Confidence 11 1246788888877766532 2 5787777764332 2 2223565554443
No 88
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=1.1e-14 Score=162.14 Aligned_cols=235 Identities=20% Similarity=0.232 Sum_probs=146.6
Q ss_pred cCCCCCCCCceechHHHHHHHHHhcccCCCce-EEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccc
Q 006254 87 YGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL 165 (653)
Q Consensus 87 ~~~~~~~f~~IvGq~~~k~aL~~~av~p~~~g-VLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~ 165 (653)
.+.+|..|++|+||++++..|..++......+ +||+|||||||||+|+++++.+. |........|..|
T Consensus 6 ~kyRP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~-----------~~~~~~~~pc~~c 74 (472)
T PRK14962 6 RKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLN-----------CENRKGVEPCNEC 74 (472)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-----------cccCCCCCCCccc
Confidence 35688999999999999998876665555544 89999999999999999999874 3222122233333
Q ss_pred cccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHH
Q 006254 166 DEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLL 245 (653)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll 245 (653)
......... ....++.+..... .|.-++. .+.. .....| ..++..||||||++.|....++.|+
T Consensus 75 ~~c~~i~~g-------~~~dv~el~aa~~----~gid~iR-~i~~-~~~~~p---~~~~~kVvIIDE~h~Lt~~a~~~LL 138 (472)
T PRK14962 75 RACRSIDEG-------TFMDVIELDAASN----RGIDEIR-KIRD-AVGYRP---MEGKYKVYIIDEVHMLTKEAFNALL 138 (472)
T ss_pred HHHHHHhcC-------CCCccEEEeCccc----CCHHHHH-HHHH-HHhhCh---hcCCeEEEEEEChHHhHHHHHHHHH
Confidence 221111000 1223444432211 1110111 1110 001112 1234579999999999999999999
Q ss_pred HHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhh
Q 006254 246 NVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMV 325 (653)
Q Consensus 246 ~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~ 325 (653)
..+++.. ..+++|+++| ....+.++|.+|+..+ .+. |++.++...++..+
T Consensus 139 k~LE~p~-------------~~vv~Ilatt-n~~kl~~~L~SR~~vv-~f~-~l~~~el~~~L~~i-------------- 188 (472)
T PRK14962 139 KTLEEPP-------------SHVVFVLATT-NLEKVPPTIISRCQVI-EFR-NISDELIIKRLQEV-------------- 188 (472)
T ss_pred HHHHhCC-------------CcEEEEEEeC-ChHhhhHHHhcCcEEE-EEC-CccHHHHHHHHHHH--------------
Confidence 9998632 2345666655 4457889999999754 776 55666544443321
Q ss_pred hhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHHHH
Q 006254 326 EEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVEL 401 (653)
Q Consensus 326 ~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~l 401 (653)
. ...++.++++++++|++.+. . +.|..++.+..+.. +.+. .||.+||.+++..
T Consensus 189 -----------~----~~egi~i~~eal~~Ia~~s~---G-dlR~aln~Le~l~~---~~~~-~It~e~V~~~l~~ 241 (472)
T PRK14962 189 -----------A----EAEGIEIDREALSFIAKRAS---G-GLRDALTMLEQVWK---FSEG-KITLETVHEALGL 241 (472)
T ss_pred -----------H----HHcCCCCCHHHHHHHHHHhC---C-CHHHHHHHHHHHHH---hcCC-CCCHHHHHHHHcC
Confidence 1 01257899999999987652 2 57888888865433 2333 4999999988754
No 89
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.61 E-value=5.9e-15 Score=156.66 Aligned_cols=216 Identities=20% Similarity=0.194 Sum_probs=147.3
Q ss_pred CCC-CC-ceechHHHHHHHHHh----cc--cCCCceEEEECCCCCHHHHHHHHHHhhCCCC--------eeecc----cc
Q 006254 91 FFP-LA-AVVGQDAIKTALLLG----AI--DREIGGIAISGRRGTAKTVMARGLHAILPPI--------EVVVG----SI 150 (653)
Q Consensus 91 ~~~-f~-~IvGq~~~k~aL~~~----av--~p~~~gVLL~GppGTGKT~lArala~~l~~~--------~~v~~----~~ 150 (653)
.|+ |+ +++|+++++..+.-. +. .+....++|.||||+||||+|++|+..+..- =.+.+ |+
T Consensus 45 ~y~~F~~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~sp 124 (361)
T smart00763 45 RYRFFDHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEESP 124 (361)
T ss_pred eccccchhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCCC
Confidence 454 55 799999998887321 11 1234559999999999999999999998642 12445 88
Q ss_pred ccCCCCC---------------------CCcccccccccccccccccccccc-cCCCe--------EeC-C---CCCccc
Q 006254 151 ANADPTC---------------------PDEWEDGLDEKAEYDTAGNLKTQI-ARSPF--------VQI-P---LGVTED 196 (653)
Q Consensus 151 ~nc~p~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f--------v~l-~---~~~~~~ 196 (653)
++-+|-. ...+|..|+.++...-.+.+.... ....| ... | .+-...
T Consensus 125 ~~e~Pl~l~p~~~r~~~~~~~~~~~~~~~~~l~p~c~~~l~~e~~gd~~~~~V~~~~~s~~~~~gi~~~~P~D~~~qdi~ 204 (361)
T smart00763 125 MHEDPLHLFPDELREDLEDEYGIPRRRLEGDLSPWCRKRLDEEYGGDIEKFEVVRVNFSELRRIGIGKFEPKDENNQDIS 204 (361)
T ss_pred CccCCcccCCHHHHHHHHHHhCCChhhcCCCCCHHHHHHHHHHhCCCcceEEEEEecCCeecceEEEEECCCCCCcccHH
Confidence 7777631 223466666655222233222210 00011 001 1 112344
Q ss_pred ceeeecchhhhhccCC---cccc-ccccccccCceEEecccccCCHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEE
Q 006254 197 RLIGSVDVEESVKTGT---TVFQ-PGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIA 272 (653)
Q Consensus 197 ~l~G~~d~~~~~~~g~---~~~~-~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIa 272 (653)
.|+|.+|+.+....+. ..+. .|.|..||+||+-++|+..++.+.++.||.+++++.+.+. |.....|.+.+||+
T Consensus 205 ~L~G~vd~~k~~~~~~~dp~a~~~~G~l~~aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~--~~~~~~~~d~liia 282 (361)
T smart00763 205 ELTGKVDIRKLEIYSESDPRAFSYDGALNRANRGILEFVEMFKADIKFLHPLLTATQEGNIKGT--GGFAMIPIDGLIIA 282 (361)
T ss_pred HHhcccCHHHhcccCCCCCeEEeccCccccccCceEEEeehhcCCHHHHHHHhhhhhcceEecC--CcccccccceEEEE
Confidence 7889999887652221 2334 4999999999999999999999999999999999996554 44446778889999
Q ss_pred EecCCC------CcccHHHHhhhcccccccCCCCHhhHHHHHH
Q 006254 273 TYNPEE------GVVREHLLDRIAINLSADLPMTFEDRVAAVG 309 (653)
Q Consensus 273 ttNp~e------g~l~~aLldRf~~~v~l~~p~~~~~r~~I~~ 309 (653)
+||+.+ +...++|+|||.++ .++++.+.....+|.+
T Consensus 283 ~sNe~e~~~~~~~k~~eaf~dR~~~i-~vpY~l~~~~E~~Iy~ 324 (361)
T smart00763 283 HSNESEWQRFKSNKKNEALLDRIIKV-KVPYCLRVSEEAQIYE 324 (361)
T ss_pred eCCHHHHhhhhccccchhhhhceEEE-eCCCcCCHHHHHHHHH
Confidence 999864 45579999999955 9988888877777765
No 90
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=7.2e-16 Score=160.78 Aligned_cols=172 Identities=18% Similarity=0.226 Sum_probs=123.3
Q ss_pred CCCCCceechHHHHHHHHHhcccCC--------------CceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCC
Q 006254 91 FFPLAAVVGQDAIKTALLLGAIDRE--------------IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT 156 (653)
Q Consensus 91 ~~~f~~IvGq~~~k~aL~~~av~p~--------------~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~ 156 (653)
.+.|++|-|.+.++.+|....+-|. ..||||+||||||||++|++++...
T Consensus 88 ~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akea---------------- 151 (386)
T KOG0737|consen 88 GVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEA---------------- 151 (386)
T ss_pred eeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHc----------------
Confidence 4579999999999999966555442 2469999999999999999999976
Q ss_pred CCCcccccccccccccccccccccccCCCeEeCCCCCcccceeee-cchhhhhccCCccccccccccccCceEEeccccc
Q 006254 157 CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGS-VDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINL 235 (653)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~-~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~ 235 (653)
.++|+.+..+...++|||. .-+.+++|+=...+ .+.|+|||||+.
T Consensus 152 --------------------------ga~fInv~~s~lt~KWfgE~eKlv~AvFslAsKl--------~P~iIFIDEvds 197 (386)
T KOG0737|consen 152 --------------------------GANFINVSVSNLTSKWFGEAQKLVKAVFSLASKL--------QPSIIFIDEVDS 197 (386)
T ss_pred --------------------------CCCcceeeccccchhhHHHHHHHHHHHHhhhhhc--------CcceeehhhHHH
Confidence 5789999999888999995 22233444333333 357999999986
Q ss_pred CCHHHHHHHHHHHHcCceEE--eeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHH
Q 006254 236 LDEGISNLLLNVLTEGVNIV--EREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQ 313 (653)
Q Consensus 236 l~~~~~~~Ll~~l~~g~~~v--~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~ 313 (653)
+-..-+..=..++..-.+.+ .=+|.......+++|+|+|| .+.+|++++++||.-.+.|+.| +.++|.+|++.++.
T Consensus 198 ~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATN-RP~DlDeAiiRR~p~rf~V~lP-~~~qR~kILkviLk 275 (386)
T KOG0737|consen 198 FLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATN-RPFDLDEAIIRRLPRRFHVGLP-DAEQRRKILKVILK 275 (386)
T ss_pred HHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCC-CCccHHHHHHHhCcceeeeCCC-chhhHHHHHHHHhc
Confidence 52110100011111111001 12455555666799999999 9999999999999999999976 78999999986644
Q ss_pred H
Q 006254 314 F 314 (653)
Q Consensus 314 ~ 314 (653)
-
T Consensus 276 ~ 276 (386)
T KOG0737|consen 276 K 276 (386)
T ss_pred c
Confidence 3
No 91
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=1.6e-14 Score=167.15 Aligned_cols=217 Identities=17% Similarity=0.153 Sum_probs=132.2
Q ss_pred ccCCCCCCCCceechHHHHHHHHHhcccCCCceE-EEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccc
Q 006254 86 SYGRQFFPLAAVVGQDAIKTALLLGAIDREIGGI-AISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDG 164 (653)
Q Consensus 86 ~~~~~~~~f~~IvGq~~~k~aL~~~av~p~~~gV-LL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~ 164 (653)
..+.+|..|++||||+.++..|.-+.......+. ||+||+|||||++||.|++.+. |.......+|..
T Consensus 7 aeKyRP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Ln-----------ce~~~~~~pCg~ 75 (944)
T PRK14949 7 ARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLN-----------CEQGVTATPCGV 75 (944)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhcc-----------CccCCCCCCCCC
Confidence 3467889999999999999998665555556664 8999999999999999999874 321111223333
Q ss_pred ccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHH
Q 006254 165 LDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLL 244 (653)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~L 244 (653)
|.......... ..-++.+.... -.|.-++ +.+... ....| ......|+||||++.|+...++.|
T Consensus 76 C~sC~~i~~g~-------~~DviEidAas----~~kVDdI-ReLie~-v~~~P---~~gk~KViIIDEAh~LT~eAqNAL 139 (944)
T PRK14949 76 CSSCVEIAQGR-------FVDLIEVDAAS----RTKVDDT-RELLDN-VQYRP---SRGRFKVYLIDEVHMLSRSSFNAL 139 (944)
T ss_pred chHHHHHhcCC-------CceEEEecccc----ccCHHHH-HHHHHH-HHhhh---hcCCcEEEEEechHhcCHHHHHHH
Confidence 33222111000 11123332210 0111111 111110 01111 123446999999999999999999
Q ss_pred HHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhh
Q 006254 245 LNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKM 324 (653)
Q Consensus 245 l~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~ 324 (653)
|..|++-. ..++||.+|| +...|.+.|++|+..+ .+. |...++..+.+..+.
T Consensus 140 LKtLEEPP-------------~~vrFILaTT-e~~kLl~TIlSRCq~f-~fk-pLs~eEI~~~L~~il------------ 191 (944)
T PRK14949 140 LKTLEEPP-------------EHVKFLLATT-DPQKLPVTVLSRCLQF-NLK-SLTQDEIGTQLNHIL------------ 191 (944)
T ss_pred HHHHhccC-------------CCeEEEEECC-CchhchHHHHHhheEE-eCC-CCCHHHHHHHHHHHH------------
Confidence 99999742 2445666666 5566889999999555 776 555554443333211
Q ss_pred hhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 006254 325 VEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVA 378 (653)
Q Consensus 325 ~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~A 378 (653)
.. ..+.+++++++.|+.++ ++ +.|..+.++..+
T Consensus 192 -------------~~----EgI~~edeAL~lIA~~S---~G-d~R~ALnLLdQa 224 (944)
T PRK14949 192 -------------TQ----EQLPFEAEALTLLAKAA---NG-SMRDALSLTDQA 224 (944)
T ss_pred -------------HH----cCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHH
Confidence 00 25788999988887764 22 478888887543
No 92
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=2e-14 Score=163.87 Aligned_cols=232 Identities=21% Similarity=0.191 Sum_probs=139.3
Q ss_pred cCCCCCCCCceechHHHHHHHHHhcccCCCce-EEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccc
Q 006254 87 YGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL 165 (653)
Q Consensus 87 ~~~~~~~f~~IvGq~~~k~aL~~~av~p~~~g-VLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~ 165 (653)
.+.+|..|++||||+.+++.|.-++-.....+ +||+||+|+|||++|+.+++.+. |........|..|
T Consensus 8 ~KyRP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~-----------c~~~~~~~pCg~C 76 (647)
T PRK07994 8 RKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLN-----------CETGITATPCGEC 76 (647)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhh-----------hccCCCCCCCCCC
Confidence 35678999999999999999976555445555 69999999999999999999874 5322122233333
Q ss_pred cccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHH
Q 006254 166 DEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLL 245 (653)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll 245 (653)
......... ....|+.+.... -.|.-|+..-+.. ..+.| ......|+||||++.|+.+.+|.||
T Consensus 77 ~~C~~i~~g-------~~~D~ieidaas----~~~VddiR~li~~--~~~~p---~~g~~KV~IIDEah~Ls~~a~NALL 140 (647)
T PRK07994 77 DNCREIEQG-------RFVDLIEIDAAS----RTKVEDTRELLDN--VQYAP---ARGRFKVYLIDEVHMLSRHSFNALL 140 (647)
T ss_pred HHHHHHHcC-------CCCCceeecccc----cCCHHHHHHHHHH--HHhhh---hcCCCEEEEEechHhCCHHHHHHHH
Confidence 221111100 012344443221 0121122111110 01111 1123459999999999999999999
Q ss_pred HHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhh
Q 006254 246 NVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMV 325 (653)
Q Consensus 246 ~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~ 325 (653)
..|++-. ..+.||.+|+ +...+.+.+++|+-.+ .+. +.+.++..+.+..+.
T Consensus 141 KtLEEPp-------------~~v~FIL~Tt-~~~kLl~TI~SRC~~~-~f~-~Ls~~ei~~~L~~il------------- 191 (647)
T PRK07994 141 KTLEEPP-------------EHVKFLLATT-DPQKLPVTILSRCLQF-HLK-ALDVEQIRQQLEHIL------------- 191 (647)
T ss_pred HHHHcCC-------------CCeEEEEecC-CccccchHHHhhheEe-eCC-CCCHHHHHHHHHHHH-------------
Confidence 9999742 2345666666 5667889999997444 777 555554443333211
Q ss_pred hhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHH
Q 006254 326 EEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKA 398 (653)
Q Consensus 326 ~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A 398 (653)
. ...+.++++++..|+.++. + +.|..+.++..+ ++. +...|+.++|...
T Consensus 192 ------------~----~e~i~~e~~aL~~Ia~~s~---G-s~R~Al~lldqa--ia~--~~~~it~~~v~~~ 240 (647)
T PRK07994 192 ------------Q----AEQIPFEPRALQLLARAAD---G-SMRDALSLTDQA--IAS--GNGQVTTDDVSAM 240 (647)
T ss_pred ------------H----HcCCCCCHHHHHHHHHHcC---C-CHHHHHHHHHHH--HHh--cCCCcCHHHHHHH
Confidence 0 0146788888888876642 2 578888887543 222 3335666666544
No 93
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.59 E-value=1.3e-14 Score=168.32 Aligned_cols=223 Identities=21% Similarity=0.197 Sum_probs=143.1
Q ss_pred cccCCCCCCCCceechHHHHH---HHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcc
Q 006254 85 DSYGRQFFPLAAVVGQDAIKT---ALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEW 161 (653)
Q Consensus 85 ~~~~~~~~~f~~IvGq~~~k~---aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~ 161 (653)
...+.+|.+|++|+||+++.. .|....-.....+++|+||||||||++|+++++.+.
T Consensus 18 Laek~RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~-------------------- 77 (725)
T PRK13341 18 LADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR-------------------- 77 (725)
T ss_pred hHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhc--------------------
Confidence 445677889999999999874 343222333567899999999999999999998653
Q ss_pred cccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHH
Q 006254 162 EDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGIS 241 (653)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~ 241 (653)
.+|+.+.... .|.-++...+..... .+-...++++||||||+.++...+
T Consensus 78 ----------------------~~f~~lna~~-----~~i~dir~~i~~a~~----~l~~~~~~~IL~IDEIh~Ln~~qQ 126 (725)
T PRK13341 78 ----------------------AHFSSLNAVL-----AGVKDLRAEVDRAKE----RLERHGKRTILFIDEVHRFNKAQQ 126 (725)
T ss_pred ----------------------Ccceeehhhh-----hhhHHHHHHHHHHHH----HhhhcCCceEEEEeChhhCCHHHH
Confidence 2333333221 111111111110000 000012356999999999999999
Q ss_pred HHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCC-CcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhH
Q 006254 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE-GVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNE 320 (653)
Q Consensus 242 ~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e-g~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~ 320 (653)
+.|+..++.+. +++|++|++.+ ..+.++|++|+.+ +.+. |.+.++...+++.+..-
T Consensus 127 daLL~~lE~g~---------------IiLI~aTTenp~~~l~~aL~SR~~v-~~l~-pLs~edi~~IL~~~l~~------ 183 (725)
T PRK13341 127 DALLPWVENGT---------------ITLIGATTENPYFEVNKALVSRSRL-FRLK-SLSDEDLHQLLKRALQD------ 183 (725)
T ss_pred HHHHHHhcCce---------------EEEEEecCCChHhhhhhHhhccccc-eecC-CCCHHHHHHHHHHHHHH------
Confidence 99999988764 46787776544 4678999999755 4776 66777666666533210
Q ss_pred HhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcC--CCCccHHHHHHH
Q 006254 321 VFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEG--REKVNVDDLKKA 398 (653)
Q Consensus 321 ~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~g--r~~Vt~eDv~~A 398 (653)
. ........+.++++++++|++++ .+ ..|..+++++.+...+...+ ...|+.++++++
T Consensus 184 ---------------~-~~~~g~~~v~I~deaL~~La~~s-~G---D~R~lln~Le~a~~~~~~~~~~~i~It~~~~~e~ 243 (725)
T PRK13341 184 ---------------K-ERGYGDRKVDLEPEAEKHLVDVA-NG---DARSLLNALELAVESTPPDEDGLIDITLAIAEES 243 (725)
T ss_pred ---------------H-HhhcCCcccCCCHHHHHHHHHhC-CC---CHHHHHHHHHHHHHhcccCCCCceeccHHHHHHH
Confidence 0 00001235789999999999887 32 47999999987654332222 224888888887
Q ss_pred HHH
Q 006254 399 VEL 401 (653)
Q Consensus 399 ~~l 401 (653)
+.-
T Consensus 244 l~~ 246 (725)
T PRK13341 244 IQQ 246 (725)
T ss_pred HHH
Confidence 754
No 94
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.59 E-value=9.6e-15 Score=171.63 Aligned_cols=228 Identities=19% Similarity=0.200 Sum_probs=155.5
Q ss_pred CCCCCCceechHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccc
Q 006254 90 QFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKA 169 (653)
Q Consensus 90 ~~~~f~~IvGq~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~ 169 (653)
++-.++.|+|+++....++..+......+++|+||||||||++|++|+..+-..
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~-------------------------- 230 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEG-------------------------- 230 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhC--------------------------
Confidence 456788999999988887655555567889999999999999999999976310
Q ss_pred cccccccccccccCCCeEeCCCCCcc--cceeeecchhhhhccCCcccccccccc---ccCceEEecccccCC-------
Q 006254 170 EYDTAGNLKTQIARSPFVQIPLGVTE--DRLIGSVDVEESVKTGTTVFQPGLLAE---AHRGVLYIDEINLLD------- 237 (653)
Q Consensus 170 ~~~~~~~~~~~~~~~~fv~l~~~~~~--~~l~G~~d~~~~~~~g~~~~~~Gll~~---A~~giL~IDEi~~l~------- 237 (653)
..+....+..++.++.+... ..+.|.+ ++.+ ..++.. ..+.|||||||+.+.
T Consensus 231 ------~~p~~l~~~~~~~~~~~~l~a~~~~~g~~--e~~l--------~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~ 294 (731)
T TIGR02639 231 ------KVPENLKNAKIYSLDMGSLLAGTKYRGDF--EERL--------KAVVSEIEKEPNAILFIDEIHTIVGAGATSG 294 (731)
T ss_pred ------CCchhhcCCeEEEecHHHHhhhccccchH--HHHH--------HHHHHHHhccCCeEEEEecHHHHhccCCCCC
Confidence 00111124455555533222 2333321 1111 112322 235699999999883
Q ss_pred --HHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCC----cccHHHHhhhcccccccCCCCHhhHHHHHHHH
Q 006254 238 --EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG----VVREHLLDRIAINLSADLPMTFEDRVAAVGIA 311 (653)
Q Consensus 238 --~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg----~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~ 311 (653)
.+.++.|+..++.|. +.+||+||+.+. +.+++|.+||.. |.+. +++.+++.+|++..
T Consensus 295 ~~~~~~~~L~~~l~~g~---------------i~~IgaTt~~e~~~~~~~d~al~rRf~~-i~v~-~p~~~~~~~il~~~ 357 (731)
T TIGR02639 295 GSMDASNLLKPALSSGK---------------LRCIGSTTYEEYKNHFEKDRALSRRFQK-IDVG-EPSIEETVKILKGL 357 (731)
T ss_pred ccHHHHHHHHHHHhCCC---------------eEEEEecCHHHHHHHhhhhHHHHHhCce-EEeC-CCCHHHHHHHHHHH
Confidence 356788999888775 579999997553 578999999985 5888 45899888888743
Q ss_pred HHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCC--CcchHHHHHHHHHHHHHHcC---
Q 006254 312 TQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQ--GHRAELYAARVAKCLAALEG--- 386 (653)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~--s~R~~i~llr~Ara~Aal~g--- 386 (653)
... .+...++.+++++++.++.++.++-.. -.+.++.++..|.+...+..
T Consensus 358 ~~~-------------------------~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~lld~a~a~~~~~~~~~ 412 (731)
T TIGR02639 358 KEK-------------------------YEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVIDEAGASFRLRPKAK 412 (731)
T ss_pred HHH-------------------------HHhccCcccCHHHHHHHHHhhhcccccccCCHHHHHHHHHhhhhhhcCcccc
Confidence 221 112235789999999999988776331 25667888877776666543
Q ss_pred -CCCccHHHHHHHHHH
Q 006254 387 -REKVNVDDLKKAVEL 401 (653)
Q Consensus 387 -r~~Vt~eDv~~A~~l 401 (653)
...|+.+||..++..
T Consensus 413 ~~~~v~~~~i~~~i~~ 428 (731)
T TIGR02639 413 KKANVSVKDIENVVAK 428 (731)
T ss_pred cccccCHHHHHHHHHH
Confidence 346999999999875
No 95
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=2.1e-14 Score=159.31 Aligned_cols=238 Identities=17% Similarity=0.168 Sum_probs=150.6
Q ss_pred cccCCCCCCCCceechHHHHHHHHHhcccCCC-ceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccc
Q 006254 85 DSYGRQFFPLAAVVGQDAIKTALLLGAIDREI-GGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWED 163 (653)
Q Consensus 85 ~~~~~~~~~f~~IvGq~~~k~aL~~~av~p~~-~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~ 163 (653)
...+.+|..|++||||+.+++.|.-+...... +++||+||+||||||+|+.+++.+ ||.-......|.
T Consensus 3 la~KyRP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~L-----------nC~~~~~~~pCg 71 (491)
T PRK14964 3 LALKYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCL-----------NCSNGPTSDPCG 71 (491)
T ss_pred hhHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHH-----------cCcCCCCCCCcc
Confidence 34567899999999999999988654433333 469999999999999999999976 453222223444
Q ss_pred cccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHH
Q 006254 164 GLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNL 243 (653)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~ 243 (653)
.|......... ....++++.... -.|.-|+..-+..- ...| ..+...|++|||++.|+.+.++.
T Consensus 72 ~C~~C~~i~~~-------~~~Dv~eidaas----~~~vddIR~Iie~~--~~~P---~~~~~KVvIIDEah~Ls~~A~Na 135 (491)
T PRK14964 72 TCHNCISIKNS-------NHPDVIEIDAAS----NTSVDDIKVILENS--CYLP---ISSKFKVYIIDEVHMLSNSAFNA 135 (491)
T ss_pred ccHHHHHHhcc-------CCCCEEEEeccc----CCCHHHHHHHHHHH--Hhcc---ccCCceEEEEeChHhCCHHHHHH
Confidence 44332211111 134455554431 12222222221111 1112 12345799999999999999999
Q ss_pred HHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhh
Q 006254 244 LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFK 323 (653)
Q Consensus 244 Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~ 323 (653)
|+..|++-. ..+.+|.+++ +...+.+.+++|+..+ .+. +.+.++..+.+...
T Consensus 136 LLK~LEePp-------------~~v~fIlatt-e~~Kl~~tI~SRc~~~-~f~-~l~~~el~~~L~~i------------ 187 (491)
T PRK14964 136 LLKTLEEPA-------------PHVKFILATT-EVKKIPVTIISRCQRF-DLQ-KIPTDKLVEHLVDI------------ 187 (491)
T ss_pred HHHHHhCCC-------------CCeEEEEEeC-ChHHHHHHHHHhheee-ecc-cccHHHHHHHHHHH------------
Confidence 999999742 2455666666 5556888999999665 776 44554433333211
Q ss_pred hhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHH
Q 006254 324 MVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELV 402 (653)
Q Consensus 324 ~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~lv 402 (653)
.. ..++.++++++++|++.+. . +.|..+.++..+.. +.+ ..||.++|.+.+.++
T Consensus 188 -------------a~----~Egi~i~~eAL~lIa~~s~---G-slR~alslLdqli~---y~~-~~It~e~V~~llg~~ 241 (491)
T PRK14964 188 -------------AK----KENIEHDEESLKLIAENSS---G-SMRNALFLLEQAAI---YSN-NKISEKSVRDLLGCV 241 (491)
T ss_pred -------------HH----HcCCCCCHHHHHHHHHHcC---C-CHHHHHHHHHHHHH---hcC-CCCCHHHHHHHHccC
Confidence 11 1357899999999987752 2 68888888765443 233 479999998875433
No 96
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=99.58 E-value=4.2e-14 Score=151.49 Aligned_cols=265 Identities=18% Similarity=0.163 Sum_probs=184.8
Q ss_pred ceechHHHHHHHHHhccc------C------CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccc
Q 006254 96 AVVGQDAIKTALLLGAID------R------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWED 163 (653)
Q Consensus 96 ~IvGq~~~k~aL~~~av~------p------~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~ 163 (653)
.|.|.+++|+|+.+.+.. | +.-+|||.|.|||+||.|.+.+-...| +.+.
T Consensus 332 SIfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsP-IaVY----------------- 393 (729)
T KOG0481|consen 332 SIFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSP-IAVY----------------- 393 (729)
T ss_pred hhcCchhHHHHHHHHhhcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCc-eEEE-----------------
Confidence 589999999999665542 1 123499999999999999999887765 2221
Q ss_pred cccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHH
Q 006254 164 GLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNL 243 (653)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~ 243 (653)
|+ ..+.+...|..++ -+...+-....+-|.+..|+|||++|||++++.++..-+
T Consensus 394 --------TS----------------GKGSSAAGLTASV--~RD~~tReFylEGGAMVLADgGVvCIDEFDKMre~DRVA 447 (729)
T KOG0481|consen 394 --------TS----------------GKGSSAAGLTASV--IRDPSTREFYLEGGAMVLADGGVVCIDEFDKMREDDRVA 447 (729)
T ss_pred --------ec----------------CCCcccccceeeE--EecCCcceEEEecceEEEecCCEEEeehhhccCchhhhH
Confidence 11 1112222222221 112222234455688899999999999999999999999
Q ss_pred HHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCC------------cccHHHHhhhcccccccCCCCHhhHHHHHHHH
Q 006254 244 LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG------------VVREHLLDRIAINLSADLPMTFEDRVAAVGIA 311 (653)
Q Consensus 244 Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg------------~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~ 311 (653)
+..+|++..+.+...|++.....+..++|+.||--| +|-+-+|+||++++.+....+.+.-..|.+.+
T Consensus 448 IHEAMEQQTISIAKAGITT~LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TILSRFDmIFIVKD~h~~~~D~~lAkHV 527 (729)
T KOG0481|consen 448 IHEAMEQQTISIAKAGITTTLNSRTSVLAAANPVFGRYDDTKTGEDNIDFMPTILSRFDMIFIVKDEHDEERDITLAKHV 527 (729)
T ss_pred HHHHHHhhhHHHhhhcceeeecchhhhhhhcCCccccccccCCcccccchhhhHhhhccEEEEEeccCcchhhhHHHHHh
Confidence 999999999999999999999999999999998322 36689999999998887554444333333332
Q ss_pred HHHHhh-hhHHh-----hhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhc----------------CCCCcc
Q 006254 312 TQFQER-SNEVF-----KMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRG----------------GCQGHR 369 (653)
Q Consensus 312 ~~~~~~-~~~~~-----~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~----------------~i~s~R 369 (653)
...-.. ...+. ..-....+.++..|.-+|.... -.+++++-+.|....... --.+.|
T Consensus 528 I~vH~~~~n~~~~~~~~~~~ei~~~~~KryI~YcR~kc~-PrLs~~AaekL~~~yV~~R~~~~q~e~~s~~rssIPITVR 606 (729)
T KOG0481|consen 528 INVHVSKANAQTDSQEENEGEIPIEKLKRYIQYCRLKCG-PRLSAEAAEKLSSRYVTMRKGVRQHEQDSDKRSSIPITVR 606 (729)
T ss_pred hhhhccccccccCccccCCCcccHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHHhHHHHHHHHhhhcccccCCCceeHH
Confidence 221111 01110 1112223466777777765543 478888888887653221 124678
Q ss_pred hHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHcCC
Q 006254 370 AELYAARVAKCLAALEGREKVNVDDLKKAVELVILP 405 (653)
Q Consensus 370 ~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~h 405 (653)
.+..++|++..+|.++-...+|++||++|++|-...
T Consensus 607 QLEAIiRI~ESLAKm~Ls~~ate~hV~EA~RLF~vS 642 (729)
T KOG0481|consen 607 QLEAIIRIAESLAKMELSPFATEAHVEEALRLFQVS 642 (729)
T ss_pred HHHHHHHHHHHHHhhcCCccccHHHHHHHHHHHhHh
Confidence 899999999999999999999999999999876554
No 97
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.58 E-value=1.1e-14 Score=171.58 Aligned_cols=157 Identities=20% Similarity=0.254 Sum_probs=114.1
Q ss_pred CCCCCCCceechHHHHHHHHHhccc-------------CCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCC
Q 006254 89 RQFFPLAAVVGQDAIKTALLLGAID-------------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADP 155 (653)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~~~av~-------------p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p 155 (653)
.+...|++|.|++.+|..|...... +...||||+||||||||++|++++..+
T Consensus 447 ~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~--------------- 511 (733)
T TIGR01243 447 VPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES--------------- 511 (733)
T ss_pred ccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---------------
Confidence 3466899999999999988443321 123579999999999999999999976
Q ss_pred CCCCcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCcccccccccc---ccCceEEecc
Q 006254 156 TCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAE---AHRGVLYIDE 232 (653)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~---A~~giL~IDE 232 (653)
+.+|+.+......+.++|.- ++.+ .-+|.. ..++||||||
T Consensus 512 ---------------------------~~~fi~v~~~~l~~~~vGes--e~~i--------~~~f~~A~~~~p~iifiDE 554 (733)
T TIGR01243 512 ---------------------------GANFIAVRGPEILSKWVGES--EKAI--------REIFRKARQAAPAIIFFDE 554 (733)
T ss_pred ---------------------------CCCEEEEehHHHhhcccCcH--HHHH--------HHHHHHHHhcCCEEEEEEC
Confidence 35677776655556677742 1111 112222 2457999999
Q ss_pred cccCC------------HHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHh--hhcccccccCC
Q 006254 233 INLLD------------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLP 298 (653)
Q Consensus 233 i~~l~------------~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLld--Rf~~~v~l~~p 298 (653)
|+.+. ..+++.||..|+.-. ...+++||+||| .+..+++++++ ||+..++++.
T Consensus 555 id~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~-----------~~~~v~vI~aTn-~~~~ld~allRpgRfd~~i~v~~- 621 (733)
T TIGR01243 555 IDAIAPARGARFDTSVTDRIVNQLLTEMDGIQ-----------ELSNVVVIAATN-RPDILDPALLRPGRFDRLILVPP- 621 (733)
T ss_pred hhhhhccCCCCCCccHHHHHHHHHHHHhhccc-----------CCCCEEEEEeCC-ChhhCCHhhcCCCccceEEEeCC-
Confidence 98762 345677777776311 123689999999 77889999997 9999999995
Q ss_pred CCHhhHHHHHHH
Q 006254 299 MTFEDRVAAVGI 310 (653)
Q Consensus 299 ~~~~~r~~I~~~ 310 (653)
++.++|.+|++.
T Consensus 622 Pd~~~R~~i~~~ 633 (733)
T TIGR01243 622 PDEEARKEIFKI 633 (733)
T ss_pred cCHHHHHHHHHH
Confidence 589999999763
No 98
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=7.2e-14 Score=151.49 Aligned_cols=235 Identities=19% Similarity=0.167 Sum_probs=143.9
Q ss_pred ccCCCCCCCCceechHHHHHHHHHhcccCCCce-EEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccc
Q 006254 86 SYGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDG 164 (653)
Q Consensus 86 ~~~~~~~~f~~IvGq~~~k~aL~~~av~p~~~g-VLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~ 164 (653)
..+.+|..|++|+||+.+++.|.-+.......+ +||+||+|||||++|+++++.+. |........|..
T Consensus 7 ~~kyrP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~-----------c~~~~~~~pc~~ 75 (363)
T PRK14961 7 ARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN-----------CQNGITSNPCRK 75 (363)
T ss_pred HHHhCCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc-----------CCCCCCCCCCCC
Confidence 345688999999999999999866555444444 69999999999999999999874 322111222333
Q ss_pred ccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHH
Q 006254 165 LDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLL 244 (653)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~L 244 (653)
|......... ....++.+.... -.+.-++..-+ +.. ...| ......|++|||++.++...++.|
T Consensus 76 c~~c~~~~~~-------~~~d~~~~~~~~----~~~v~~ir~i~-~~~-~~~p---~~~~~kviIIDEa~~l~~~a~naL 139 (363)
T PRK14961 76 CIICKEIEKG-------LCLDLIEIDAAS----RTKVEEMREIL-DNI-YYSP---SKSRFKVYLIDEVHMLSRHSFNAL 139 (363)
T ss_pred CHHHHHHhcC-------CCCceEEecccc----cCCHHHHHHHH-HHH-hcCc---ccCCceEEEEEChhhcCHHHHHHH
Confidence 3221110000 011233332110 00111111111 000 0111 112346999999999999999999
Q ss_pred HHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhh
Q 006254 245 LNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKM 324 (653)
Q Consensus 245 l~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~ 324 (653)
+..+++.. ..+.+|.++| +...+.+.+.+|+..+ .+. |++.++..+++..+..
T Consensus 140 Lk~lEe~~-------------~~~~fIl~t~-~~~~l~~tI~SRc~~~-~~~-~l~~~el~~~L~~~~~----------- 192 (363)
T PRK14961 140 LKTLEEPP-------------QHIKFILATT-DVEKIPKTILSRCLQF-KLK-IISEEKIFNFLKYILI----------- 192 (363)
T ss_pred HHHHhcCC-------------CCeEEEEEcC-ChHhhhHHHHhhceEE-eCC-CCCHHHHHHHHHHHHH-----------
Confidence 99998742 2344555555 4456888999998544 777 5677765555442111
Q ss_pred hhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHHH
Q 006254 325 VEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (653)
Q Consensus 325 ~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~ 400 (653)
...+.++++++++++..+ +. +.|..+.++..+.. + |...|+.++|.+++.
T Consensus 193 ------------------~~g~~i~~~al~~ia~~s---~G-~~R~al~~l~~~~~---~-~~~~It~~~v~~~l~ 242 (363)
T PRK14961 193 ------------------KESIDTDEYALKLIAYHA---HG-SMRDALNLLEHAIN---L-GKGNINIKNVTDMLG 242 (363)
T ss_pred ------------------HcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHHH---h-cCCCCCHHHHHHHHC
Confidence 124679999999888765 22 58888888765433 2 567899999988874
No 99
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.3e-14 Score=162.34 Aligned_cols=218 Identities=22% Similarity=0.290 Sum_probs=157.8
Q ss_pred CCCCCCceechHHHHHHHHHh---cccCC---------CceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCC
Q 006254 90 QFFPLAAVVGQDAIKTALLLG---AIDRE---------IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTC 157 (653)
Q Consensus 90 ~~~~f~~IvGq~~~k~aL~~~---av~p~---------~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~ 157 (653)
...+|.++.|.+++|..|... +-+|. ..||||+||||||||+|||+++...
T Consensus 145 ~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA----------------- 207 (596)
T COG0465 145 VKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA----------------- 207 (596)
T ss_pred cCcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc-----------------
Confidence 457899999999999988321 22442 3679999999999999999999865
Q ss_pred CCcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCcccccccccccc---CceEEecccc
Q 006254 158 PDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAH---RGVLYIDEIN 234 (653)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~---~giL~IDEi~ 234 (653)
+.||+.++.+...+.++|. |+...+ -++.+|. .+|+|||||+
T Consensus 208 -------------------------~VPFf~iSGS~FVemfVGv---------GAsRVR-dLF~qAkk~aP~IIFIDEiD 252 (596)
T COG0465 208 -------------------------GVPFFSISGSDFVEMFVGV---------GASRVR-DLFEQAKKNAPCIIFIDEID 252 (596)
T ss_pred -------------------------CCCceeccchhhhhhhcCC---------CcHHHH-HHHHHhhccCCCeEEEehhh
Confidence 6899999999988888884 444332 3565553 5899999999
Q ss_pred cCCH--------------HHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHh--hhcccccccCC
Q 006254 235 LLDE--------------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLP 298 (653)
Q Consensus 235 ~l~~--------------~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLld--Rf~~~v~l~~p 298 (653)
.... .++|.||.-||- .. -...+++|++|| .+.-++++|++ ||+..|.++.|
T Consensus 253 AvGr~Rg~g~GggnderEQTLNQlLvEmDG---------F~--~~~gviviaaTN-RpdVlD~ALlRpgRFDRqI~V~~P 320 (596)
T COG0465 253 AVGRQRGAGLGGGNDEREQTLNQLLVEMDG---------FG--GNEGVIVIAATN-RPDVLDPALLRPGRFDRQILVELP 320 (596)
T ss_pred hcccccCCCCCCCchHHHHHHHHHHhhhcc---------CC--CCCceEEEecCC-CcccchHhhcCCCCcceeeecCCc
Confidence 7632 356777776652 22 112478999999 78888999998 99999999965
Q ss_pred CCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHH-HHHHHHHHHhcCCCCcchHHHHHHH
Q 006254 299 MTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQ-LKYLVMEALRGGCQGHRAELYAARV 377 (653)
Q Consensus 299 ~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~-l~~l~~~~~~~~i~s~R~~i~llr~ 377 (653)
|...|++|++.. . + ++.+++++ +..+ +...-..+.-...+++.-
T Consensus 321 -Di~gRe~IlkvH--~-------------------------~----~~~l~~~Vdl~~i---Ar~tpGfsGAdL~nl~NE 365 (596)
T COG0465 321 -DIKGREQILKVH--A-------------------------K----NKPLAEDVDLKKI---ARGTPGFSGADLANLLNE 365 (596)
T ss_pred -chhhHHHHHHHH--h-------------------------h----cCCCCCcCCHHHH---hhhCCCcccchHhhhHHH
Confidence 889999998721 1 1 12222111 1112 222222233445677777
Q ss_pred HHHHHHHcCCCCccHHHHHHHHHHHcCCC
Q 006254 378 AKCLAALEGREKVNVDDLKKAVELVILPR 406 (653)
Q Consensus 378 Ara~Aal~gr~~Vt~eDv~~A~~lvl~hR 406 (653)
|.-+|+-.++..|+..|+.+|...++..=
T Consensus 366 Aal~aar~n~~~i~~~~i~ea~drv~~G~ 394 (596)
T COG0465 366 AALLAARRNKKEITMRDIEEAIDRVIAGP 394 (596)
T ss_pred HHHHHHHhcCeeEeccchHHHHHHHhcCc
Confidence 88899999999999999999999998753
No 100
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.57 E-value=2.7e-14 Score=166.40 Aligned_cols=213 Identities=22% Similarity=0.206 Sum_probs=135.8
Q ss_pred CceechHHHHHHHHHhcc-------cC--CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccc
Q 006254 95 AAVVGQDAIKTALLLGAI-------DR--EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL 165 (653)
Q Consensus 95 ~~IvGq~~~k~aL~~~av-------~p--~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~ 165 (653)
..|+||+.++..|..++. .+ -.+.+||.||||||||.+|++|+..+.. ....++|..+
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~----~~i~id~se~--------- 524 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI----ELLRFDMSEY--------- 524 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCC----CcEEeechhh---------
Confidence 358999999988843322 12 2467999999999999999999998841 1112222110
Q ss_pred cccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCcc-ccccccccc----cCceEEecccccCCHHH
Q 006254 166 DEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTV-FQPGLLAEA----HRGVLYIDEINLLDEGI 240 (653)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~-~~~Gll~~A----~~giL~IDEi~~l~~~~ 240 (653)
.......+++|.-. |... ...|.+..+ ..+|||||||+++++++
T Consensus 525 ------------------------~~~~~~~~LiG~~~-------gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v 573 (758)
T PRK11034 525 ------------------------MERHTVSRLIGAPP-------GYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDV 573 (758)
T ss_pred ------------------------cccccHHHHcCCCC-------CcccccccchHHHHHHhCCCcEEEeccHhhhhHHH
Confidence 00011234555310 1110 122334332 45899999999999999
Q ss_pred HHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCC------------------------CcccHHHHhhhccccccc
Q 006254 241 SNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE------------------------GVVREHLLDRIAINLSAD 296 (653)
Q Consensus 241 ~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e------------------------g~l~~aLldRf~~~v~l~ 296 (653)
++.|+++|++|.++- ..|..... .++++|+|||... ..|+|.|+.|++.+|.+.
T Consensus 574 ~~~LLq~ld~G~ltd-~~g~~vd~-rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~ 651 (758)
T PRK11034 574 FNLLLQVMDNGTLTD-NNGRKADF-RNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFD 651 (758)
T ss_pred HHHHHHHHhcCeeec-CCCceecC-CCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcC
Confidence 999999999998642 23333322 3577999999420 137799999999887777
Q ss_pred CCCCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 006254 297 LPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAA 375 (653)
Q Consensus 297 ~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~ll 375 (653)
|.+.+....|+..... .+..++ +..--.+.++++++++|++.+..... |.|....++
T Consensus 652 -~L~~~~l~~I~~~~l~-----------------~~~~~l---~~~~i~l~~~~~~~~~l~~~~~~~~~-GAR~l~r~i 708 (758)
T PRK11034 652 -HLSTDVIHQVVDKFIV-----------------ELQAQL---DQKGVSLEVSQEARDWLAEKGYDRAM-GARPMARVI 708 (758)
T ss_pred -CCCHHHHHHHHHHHHH-----------------HHHHHH---HHCCCCceECHHHHHHHHHhCCCCCC-CCchHHHHH
Confidence 7888888777753221 112222 12223588999999999987665433 667655544
No 101
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.57 E-value=4.8e-14 Score=160.24 Aligned_cols=235 Identities=20% Similarity=0.208 Sum_probs=144.0
Q ss_pred ccCCCCCCCCceechHHHHHHHHHhcccCCCc-eEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccc
Q 006254 86 SYGRQFFPLAAVVGQDAIKTALLLGAIDREIG-GIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDG 164 (653)
Q Consensus 86 ~~~~~~~~f~~IvGq~~~k~aL~~~av~p~~~-gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~ 164 (653)
..+.+|..|++||||+.+++.|..++...... .+||+||+|+|||++|+.|++.+. |...-....|..
T Consensus 7 arKYRP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln-----------C~~~~~~~pCg~ 75 (709)
T PRK08691 7 ARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLN-----------CENAQHGEPCGV 75 (709)
T ss_pred HHHhCCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc-----------ccCCCCCCCCcc
Confidence 34578899999999999999997655544444 489999999999999999999873 432212223333
Q ss_pred ccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHH
Q 006254 165 LDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLL 244 (653)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~L 244 (653)
|......... ....++.+.... -.|.-++..-+... ...| ..+...|+||||++.|+...++.|
T Consensus 76 C~sCr~i~~g-------~~~DvlEidaAs----~~gVd~IRelle~a--~~~P---~~gk~KVIIIDEad~Ls~~A~NAL 139 (709)
T PRK08691 76 CQSCTQIDAG-------RYVDLLEIDAAS----NTGIDNIREVLENA--QYAP---TAGKYKVYIIDEVHMLSKSAFNAM 139 (709)
T ss_pred cHHHHHHhcc-------CccceEEEeccc----cCCHHHHHHHHHHH--Hhhh---hhCCcEEEEEECccccCHHHHHHH
Confidence 3221110000 011223332111 01111111111100 0111 112356999999999999999999
Q ss_pred HHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhh
Q 006254 245 LNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKM 324 (653)
Q Consensus 245 l~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~ 324 (653)
|..|++-. ..+.||.++| +...+.+.+++|+-.+ .+. +...++..+.+..+
T Consensus 140 LKtLEEPp-------------~~v~fILaTt-d~~kL~~TIrSRC~~f-~f~-~Ls~eeI~~~L~~I------------- 190 (709)
T PRK08691 140 LKTLEEPP-------------EHVKFILATT-DPHKVPVTVLSRCLQF-VLR-NMTAQQVADHLAHV------------- 190 (709)
T ss_pred HHHHHhCC-------------CCcEEEEEeC-CccccchHHHHHHhhh-hcC-CCCHHHHHHHHHHH-------------
Confidence 99999632 2456777777 6667888999998544 665 44555433333211
Q ss_pred hhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHHH
Q 006254 325 VEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (653)
Q Consensus 325 ~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~ 400 (653)
.. ..++.++++++..|++.+. . ++|..+.++..+..+ |...|+.++|..++.
T Consensus 191 ------------l~----kEgi~id~eAL~~Ia~~A~---G-slRdAlnLLDqaia~----g~g~It~e~V~~lLG 242 (709)
T PRK08691 191 ------------LD----SEKIAYEPPALQLLGRAAA---G-SMRDALSLLDQAIAL----GSGKVAENDVRQMIG 242 (709)
T ss_pred ------------HH----HcCCCcCHHHHHHHHHHhC---C-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHHc
Confidence 11 1257899999999988763 2 689999988654432 455788888776643
No 102
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=5.1e-14 Score=158.34 Aligned_cols=235 Identities=17% Similarity=0.202 Sum_probs=146.0
Q ss_pred ccCCCCCCCCceechHHHHHHHHHhcccCCCce-EEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccc
Q 006254 86 SYGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDG 164 (653)
Q Consensus 86 ~~~~~~~~f~~IvGq~~~k~aL~~~av~p~~~g-VLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~ 164 (653)
..+.+|..|++|+||+.++..|.-++......+ +||+||+|||||++|+.+++.+. |........|..
T Consensus 7 a~KyRP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~-----------c~~~~~~~pCg~ 75 (546)
T PRK14957 7 ARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLN-----------CKTGVTAEPCNK 75 (546)
T ss_pred HHHHCcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhC-----------CCCCCCCCCCcc
Confidence 345678899999999999998876554434444 88999999999999999999873 433323333444
Q ss_pred ccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHH
Q 006254 165 LDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLL 244 (653)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~L 244 (653)
|......... ....++.+.... -.|.-++..-+..- ...| ..++..|+||||+++|+...++.|
T Consensus 76 C~sC~~i~~~-------~~~dlieidaas----~~gvd~ir~ii~~~--~~~p---~~g~~kViIIDEa~~ls~~a~naL 139 (546)
T PRK14957 76 CENCVAINNN-------SFIDLIEIDAAS----RTGVEETKEILDNI--QYMP---SQGRYKVYLIDEVHMLSKQSFNAL 139 (546)
T ss_pred cHHHHHHhcC-------CCCceEEeeccc----ccCHHHHHHHHHHH--Hhhh---hcCCcEEEEEechhhccHHHHHHH
Confidence 4332111000 012233332111 12221211111000 0011 123456999999999999999999
Q ss_pred HHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhh
Q 006254 245 LNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKM 324 (653)
Q Consensus 245 l~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~ 324 (653)
|..|++.. ..+.+|.+|+ +...+.+.+++|+..+ .+. |.+.++..+.+..+
T Consensus 140 LK~LEepp-------------~~v~fIL~Tt-d~~kil~tI~SRc~~~-~f~-~Ls~~eI~~~L~~i------------- 190 (546)
T PRK14957 140 LKTLEEPP-------------EYVKFILATT-DYHKIPVTILSRCIQL-HLK-HISQADIKDQLKII------------- 190 (546)
T ss_pred HHHHhcCC-------------CCceEEEEEC-ChhhhhhhHHHheeeE-EeC-CCCHHHHHHHHHHH-------------
Confidence 99999752 2345666666 5666777899999555 777 55555433333211
Q ss_pred hhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHHH
Q 006254 325 VEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (653)
Q Consensus 325 ~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~ 400 (653)
... .++.++++++++|+..+ +. +.|..++++..+.. +.+ ..|+.++|++++.
T Consensus 191 ------------l~~----egi~~e~~Al~~Ia~~s---~G-dlR~alnlLek~i~---~~~-~~It~~~V~~~l~ 242 (546)
T PRK14957 191 ------------LAK----ENINSDEQSLEYIAYHA---KG-SLRDALSLLDQAIS---FCG-GELKQAQIKQMLG 242 (546)
T ss_pred ------------HHH----cCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHHH---hcc-CCCCHHHHHHHHc
Confidence 111 24789999999988776 22 58988888865543 334 5799988887644
No 103
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=7.6e-14 Score=158.85 Aligned_cols=233 Identities=18% Similarity=0.230 Sum_probs=144.4
Q ss_pred cCCCCCCCCceechHHHHHHHHHhcccCCCce-EEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCC-CCC----CCc
Q 006254 87 YGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANAD-PTC----PDE 160 (653)
Q Consensus 87 ~~~~~~~f~~IvGq~~~k~aL~~~av~p~~~g-VLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~-p~~----~~~ 160 (653)
.+.+|..|++||||+.+++.|.-++......+ +||+||+|||||++|+.+++.+ ||. |+. ...
T Consensus 8 ~KyRP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~L-----------nC~~~~~~~~~~~~ 76 (618)
T PRK14951 8 RKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSL-----------NCQGPDGQGGITAT 76 (618)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh-----------cCCCcccccCCCCC
Confidence 35788999999999999999976555445555 5999999999999999999987 463 111 112
Q ss_pred ccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHH
Q 006254 161 WEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGI 240 (653)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~ 240 (653)
.|..|......... ....|+.+..... .|.-++...+.. ....| ......|++|||++.|+.+.
T Consensus 77 pCg~C~~C~~i~~g-------~h~D~~eldaas~----~~Vd~iReli~~--~~~~p---~~g~~KV~IIDEvh~Ls~~a 140 (618)
T PRK14951 77 PCGVCQACRDIDSG-------RFVDYTELDAASN----RGVDEVQQLLEQ--AVYKP---VQGRFKVFMIDEVHMLTNTA 140 (618)
T ss_pred CCCccHHHHHHHcC-------CCCceeecCcccc----cCHHHHHHHHHH--HHhCc---ccCCceEEEEEChhhCCHHH
Confidence 44444432221111 1223444432211 121122221111 01111 11234599999999999999
Q ss_pred HHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhH
Q 006254 241 SNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNE 320 (653)
Q Consensus 241 ~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~ 320 (653)
+|.||..|++-. ..+.+|.+|+ +...+.+.+++|+..+ .+. +.+.++..+.+..+
T Consensus 141 ~NaLLKtLEEPP-------------~~~~fIL~Tt-d~~kil~TIlSRc~~~-~f~-~Ls~eei~~~L~~i--------- 195 (618)
T PRK14951 141 FNAMLKTLEEPP-------------EYLKFVLATT-DPQKVPVTVLSRCLQF-NLR-PMAPETVLEHLTQV--------- 195 (618)
T ss_pred HHHHHHhcccCC-------------CCeEEEEEEC-CchhhhHHHHHhceee-ecC-CCCHHHHHHHHHHH---------
Confidence 999999998742 2445666666 5666778899998554 776 44555433333211
Q ss_pred HhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHH
Q 006254 321 VFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (653)
Q Consensus 321 ~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~ 399 (653)
. ...++.++++++.+|+..+. . ++|..+.++..+-.+ |...|+.++|+.++
T Consensus 196 ----------------~----~~egi~ie~~AL~~La~~s~---G-slR~al~lLdq~ia~----~~~~It~~~V~~~L 246 (618)
T PRK14951 196 ----------------L----AAENVPAEPQALRLLARAAR---G-SMRDALSLTDQAIAF----GSGQLQEAAVRQML 246 (618)
T ss_pred ----------------H----HHcCCCCCHHHHHHHHHHcC---C-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 1 01257899999999987653 2 688888887433222 45578988887764
No 104
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=9e-14 Score=155.40 Aligned_cols=241 Identities=17% Similarity=0.248 Sum_probs=151.0
Q ss_pred cCCCCCCCCceechHHHHHHHHHhcccC-CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCC----CCCcc
Q 006254 87 YGRQFFPLAAVVGQDAIKTALLLGAIDR-EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT----CPDEW 161 (653)
Q Consensus 87 ~~~~~~~f~~IvGq~~~k~aL~~~av~p-~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~----~~~~~ 161 (653)
.+.+|..|++++||+.+++.|..+.... ..+.+||+||+|||||++|+.+++.+. |... .....
T Consensus 13 ~kyRP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Ln-----------c~~~~~~~~~~~~ 81 (507)
T PRK06645 13 RKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVN-----------CSALITENTTIKT 81 (507)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc-----------CccccccCcCcCC
Confidence 3567889999999999999886654433 235799999999999999999999874 3210 01123
Q ss_pred cccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHH
Q 006254 162 EDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGIS 241 (653)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~ 241 (653)
|..|......... ....++.+..... .|.-|+...+.. . ...| ..+...|+||||++.|+.+.+
T Consensus 82 C~~C~~C~~i~~~-------~h~Dv~eidaas~----~~vd~Ir~iie~-a-~~~P---~~~~~KVvIIDEa~~Ls~~a~ 145 (507)
T PRK06645 82 CEQCTNCISFNNH-------NHPDIIEIDAASK----TSVDDIRRIIES-A-EYKP---LQGKHKIFIIDEVHMLSKGAF 145 (507)
T ss_pred CCCChHHHHHhcC-------CCCcEEEeeccCC----CCHHHHHHHHHH-H-Hhcc---ccCCcEEEEEEChhhcCHHHH
Confidence 3333221111000 1233444433211 122222221111 0 1111 123567999999999999999
Q ss_pred HHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHH
Q 006254 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEV 321 (653)
Q Consensus 242 ~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~ 321 (653)
+.|+..|++. |..+++|.+|+ +...+.+.+++|+..+ ++. +.+.++..+++..+..
T Consensus 146 naLLk~LEep-------------p~~~vfI~aTt-e~~kI~~tI~SRc~~~-ef~-~ls~~el~~~L~~i~~-------- 201 (507)
T PRK06645 146 NALLKTLEEP-------------PPHIIFIFATT-EVQKIPATIISRCQRY-DLR-RLSFEEIFKLLEYITK-------- 201 (507)
T ss_pred HHHHHHHhhc-------------CCCEEEEEEeC-ChHHhhHHHHhcceEE-Ecc-CCCHHHHHHHHHHHHH--------
Confidence 9999999863 23456666666 4556888999999544 776 5566655555442211
Q ss_pred hhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHHHH
Q 006254 322 FKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVEL 401 (653)
Q Consensus 322 ~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~l 401 (653)
..++.++++++++|+..+ +. +.|..+.++..+..++.-. ...||.+||...+..
T Consensus 202 ---------------------~egi~ie~eAL~~Ia~~s---~G-slR~al~~Ldkai~~~~~~-~~~It~~~V~~llg~ 255 (507)
T PRK06645 202 ---------------------QENLKTDIEALRIIAYKS---EG-SARDAVSILDQAASMSAKS-DNIISPQVINQMLGL 255 (507)
T ss_pred ---------------------HcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHHHhhccC-CCCcCHHHHHHHHCC
Confidence 125789999999987754 23 6899999987765554211 347999999988765
Q ss_pred HcC
Q 006254 402 VIL 404 (653)
Q Consensus 402 vl~ 404 (653)
+..
T Consensus 256 ~~~ 258 (507)
T PRK06645 256 VDS 258 (507)
T ss_pred CCH
Confidence 444
No 105
>PLN03025 replication factor C subunit; Provisional
Probab=99.55 E-value=9.4e-14 Score=148.06 Aligned_cols=215 Identities=18% Similarity=0.212 Sum_probs=137.4
Q ss_pred cCCCCCCCCceechHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccccc
Q 006254 87 YGRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLD 166 (653)
Q Consensus 87 ~~~~~~~f~~IvGq~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~ 166 (653)
.+.+|..|++|+||++++..|...+......++||+||||||||++|+++++.+. |.. |
T Consensus 5 ~kyrP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~-----------~~~-----~----- 63 (319)
T PLN03025 5 EKYRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL-----------GPN-----Y----- 63 (319)
T ss_pred hhcCCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh-----------ccc-----C-----
Confidence 4678899999999999999886555555667899999999999999999999863 100 0
Q ss_pred ccccccccccccccccCCCeEeCCCCCcccceeeecch-hhhhccCCccccccccccccCceEEecccccCCHHHHHHHH
Q 006254 167 EKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDV-EESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLL 245 (653)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~-~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll 245 (653)
...++.+..+ +. .| +|. ...+..... ....+......|++|||++.++...++.|+
T Consensus 64 ----------------~~~~~eln~s--d~--~~-~~~vr~~i~~~~~--~~~~~~~~~~kviiiDE~d~lt~~aq~aL~ 120 (319)
T PLN03025 64 ----------------KEAVLELNAS--DD--RG-IDVVRNKIKMFAQ--KKVTLPPGRHKIVILDEADSMTSGAQQALR 120 (319)
T ss_pred ----------------ccceeeeccc--cc--cc-HHHHHHHHHHHHh--ccccCCCCCeEEEEEechhhcCHHHHHHHH
Confidence 1122323221 11 11 111 111100000 000011123469999999999999999999
Q ss_pred HHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhh
Q 006254 246 NVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMV 325 (653)
Q Consensus 246 ~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~ 325 (653)
..|+... ....+|.++| ....+.++|.+|+.. +.+. +++.++..+.+...
T Consensus 121 ~~lE~~~-------------~~t~~il~~n-~~~~i~~~L~SRc~~-i~f~-~l~~~~l~~~L~~i-------------- 170 (319)
T PLN03025 121 RTMEIYS-------------NTTRFALACN-TSSKIIEPIQSRCAI-VRFS-RLSDQEILGRLMKV-------------- 170 (319)
T ss_pred HHHhccc-------------CCceEEEEeC-CccccchhHHHhhhc-ccCC-CCCHHHHHHHHHHH--------------
Confidence 9998522 1234666777 445677899999854 4776 44555544443311
Q ss_pred hhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHH
Q 006254 326 EEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (653)
Q Consensus 326 ~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~ 399 (653)
. ....+.+++++++++++.+. . ..|..++.++.+. .|...|+.++|....
T Consensus 171 -----------~----~~egi~i~~~~l~~i~~~~~---g-DlR~aln~Lq~~~-----~~~~~i~~~~v~~~~ 220 (319)
T PLN03025 171 -----------V----EAEKVPYVPEGLEAIIFTAD---G-DMRQALNNLQATH-----SGFGFVNQENVFKVC 220 (319)
T ss_pred -----------H----HHcCCCCCHHHHHHHHHHcC---C-CHHHHHHHHHHHH-----hcCCCCCHHHHHHHc
Confidence 1 11357899999999977653 2 5899999987332 245579999987654
No 106
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=7.5e-15 Score=163.85 Aligned_cols=163 Identities=22% Similarity=0.271 Sum_probs=119.2
Q ss_pred CCCCCCCCceechHHHHHHHHHhcccC------------CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCC
Q 006254 88 GRQFFPLAAVVGQDAIKTALLLGAIDR------------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADP 155 (653)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~~~av~p------------~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p 155 (653)
+.+.+.|+||-|.+++|..++-..--| ...|||||||||||||.+|||+|..+
T Consensus 665 KIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc--------------- 729 (953)
T KOG0736|consen 665 KIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC--------------- 729 (953)
T ss_pred CCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc---------------
Confidence 457788999999999999985432222 24579999999999999999999975
Q ss_pred CCCCcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEeccccc
Q 006254 156 TCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINL 235 (653)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~ 235 (653)
...|+.+..-..-.+++|.- |+.++ .+|+. -..|.++|||+||++.
T Consensus 730 ---------------------------sL~FlSVKGPELLNMYVGqS--E~NVR---~VFer--AR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 730 ---------------------------SLNFLSVKGPELLNMYVGQS--EENVR---EVFER--ARSAAPCVIFFDELDS 775 (953)
T ss_pred ---------------------------eeeEEeecCHHHHHHHhcch--HHHHH---HHHHH--hhccCCeEEEeccccc
Confidence 34566665555556677742 12211 12221 1234679999999999
Q ss_pred CCH-------------HHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHh--hhcccccccCCCC
Q 006254 236 LDE-------------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPMT 300 (653)
Q Consensus 236 l~~-------------~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLld--Rf~~~v~l~~p~~ 300 (653)
+.+ .++..||..|+ |.+..-..++.+||+|| .+.-|+|+|++ ||+..|++..+.+
T Consensus 776 lAP~RG~sGDSGGVMDRVVSQLLAELD---------gls~~~s~~VFViGATN-RPDLLDpALLRPGRFDKLvyvG~~~d 845 (953)
T KOG0736|consen 776 LAPNRGRSGDSGGVMDRVVSQLLAELD---------GLSDSSSQDVFVIGATN-RPDLLDPALLRPGRFDKLVYVGPNED 845 (953)
T ss_pred cCccCCCCCCccccHHHHHHHHHHHhh---------cccCCCCCceEEEecCC-CccccChhhcCCCccceeEEecCCcc
Confidence 854 47788888777 33332233688999999 88888999997 9999999998878
Q ss_pred HhhHHHHHH
Q 006254 301 FEDRVAAVG 309 (653)
Q Consensus 301 ~~~r~~I~~ 309 (653)
.+.+..|++
T Consensus 846 ~esk~~vL~ 854 (953)
T KOG0736|consen 846 AESKLRVLE 854 (953)
T ss_pred HHHHHHHHH
Confidence 887877776
No 107
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=2.9e-14 Score=160.88 Aligned_cols=218 Identities=22% Similarity=0.236 Sum_probs=150.1
Q ss_pred CCCCCCCCceechHHHHHHHHHhccc-------------CCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCC
Q 006254 88 GRQFFPLAAVVGQDAIKTALLLGAID-------------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANAD 154 (653)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~~~av~-------------p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~ 154 (653)
..+.+.|.+|.|.+.+|..+..+... +...||||+||||||||++|++++..+
T Consensus 235 ~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~-------------- 300 (494)
T COG0464 235 EDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES-------------- 300 (494)
T ss_pred CCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC--------------
Confidence 34568899999999988877332211 223589999999999999999999976
Q ss_pred CCCCCcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccc---cCceEEec
Q 006254 155 PTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYID 231 (653)
Q Consensus 155 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~ID 231 (653)
+.+|+.+......+.|+|.. ++.+. .+|..| ..+|||||
T Consensus 301 ----------------------------~~~fi~v~~~~l~sk~vGes--ek~ir--------~~F~~A~~~~p~iiFiD 342 (494)
T COG0464 301 ----------------------------RSRFISVKGSELLSKWVGES--EKNIR--------ELFEKARKLAPSIIFID 342 (494)
T ss_pred ----------------------------CCeEEEeeCHHHhccccchH--HHHHH--------HHHHHHHcCCCcEEEEE
Confidence 57888887777778888853 22221 233333 47899999
Q ss_pred ccccCC-----------HHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHh--hhcccccccCC
Q 006254 232 EINLLD-----------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLP 298 (653)
Q Consensus 232 Ei~~l~-----------~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLld--Rf~~~v~l~~p 298 (653)
||+.+- ..+++.||..|+.-. --.++++|+||| .+..+++++++ ||+..++++ +
T Consensus 343 EiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e-----------~~~~v~vi~aTN-~p~~ld~a~lR~gRfd~~i~v~-~ 409 (494)
T COG0464 343 EIDSLASGRGPSEDGSGRRVVGQLLTELDGIE-----------KAEGVLVIAATN-RPDDLDPALLRPGRFDRLIYVP-L 409 (494)
T ss_pred chhhhhccCCCCCchHHHHHHHHHHHHhcCCC-----------ccCceEEEecCC-CccccCHhhcccCccceEeecC-C
Confidence 999761 257788888886322 012478999999 88889999999 999999999 5
Q ss_pred CCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 006254 299 MTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVA 378 (653)
Q Consensus 299 ~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~A 378 (653)
++.++|.+|+.........+ -..+-.++.+++.... . +......+++-|
T Consensus 410 pd~~~r~~i~~~~~~~~~~~----------------------------~~~~~~~~~l~~~t~~--~-sgadi~~i~~ea 458 (494)
T COG0464 410 PDLEERLEIFKIHLRDKKPP----------------------------LAEDVDLEELAEITEG--Y-SGADIAALVREA 458 (494)
T ss_pred CCHHHHHHHHHHHhcccCCc----------------------------chhhhhHHHHHHHhcC--C-CHHHHHHHHHHH
Confidence 69999999987543311110 0112223333332221 2 333444555666
Q ss_pred HHHHHHcC-CCCccHHHHHHHHHH
Q 006254 379 KCLAALEG-REKVNVDDLKKAVEL 401 (653)
Q Consensus 379 ra~Aal~g-r~~Vt~eDv~~A~~l 401 (653)
.-.|..+. ...|+.+|+..|..-
T Consensus 459 ~~~~~~~~~~~~~~~~~~~~a~~~ 482 (494)
T COG0464 459 ALEALREARRREVTLDDFLDALKK 482 (494)
T ss_pred HHHHHHHhccCCccHHHHHHHHHh
Confidence 66666666 778999999999986
No 108
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=1.4e-13 Score=156.16 Aligned_cols=236 Identities=18% Similarity=0.161 Sum_probs=147.2
Q ss_pred cCCCCCCCCceechHHHHHHHHHhcccCCCce-EEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccc
Q 006254 87 YGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL 165 (653)
Q Consensus 87 ~~~~~~~f~~IvGq~~~k~aL~~~av~p~~~g-VLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~ 165 (653)
.+.+|..|++|+||+.+++.|.-.+......| +||+||+|||||++|+.+++.+ ||........|..|
T Consensus 5 ~kyRP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l-----------~c~~~~~~~pCg~C 73 (584)
T PRK14952 5 RKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSL-----------NCAQGPTATPCGVC 73 (584)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh-----------ccccCCCCCccccc
Confidence 35788999999999999999877665555666 6999999999999999999987 45432222345544
Q ss_pred cccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHH
Q 006254 166 DEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLL 245 (653)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll 245 (653)
.......... .....++.+..... +++|--+.+.+- ..+.| ..+..-|++|||++.|+...++.||
T Consensus 74 ~~C~~i~~~~-----~~~~dvieidaas~-----~gvd~iRel~~~-~~~~P---~~~~~KVvIIDEah~Lt~~A~NALL 139 (584)
T PRK14952 74 ESCVALAPNG-----PGSIDVVELDAASH-----GGVDDTRELRDR-AFYAP---AQSRYRIFIVDEAHMVTTAGFNALL 139 (584)
T ss_pred HHHHHhhccc-----CCCceEEEeccccc-----cCHHHHHHHHHH-HHhhh---hcCCceEEEEECCCcCCHHHHHHHH
Confidence 4322211100 01234555533211 122221222110 01111 1234569999999999999999999
Q ss_pred HHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhh
Q 006254 246 NVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMV 325 (653)
Q Consensus 246 ~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~ 325 (653)
..|++- |..+++|.+|+ +...+.+.+++|+.. +.+. +.+.++..+.+..+
T Consensus 140 K~LEEp-------------p~~~~fIL~tt-e~~kll~TI~SRc~~-~~F~-~l~~~~i~~~L~~i-------------- 189 (584)
T PRK14952 140 KIVEEP-------------PEHLIFIFATT-EPEKVLPTIRSRTHH-YPFR-LLPPRTMRALIARI-------------- 189 (584)
T ss_pred HHHhcC-------------CCCeEEEEEeC-ChHhhHHHHHHhceE-EEee-CCCHHHHHHHHHHH--------------
Confidence 999973 23456666665 556788999999654 4776 44554333332211
Q ss_pred hhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHH
Q 006254 326 EEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (653)
Q Consensus 326 ~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~ 399 (653)
.. ...+.++++++.+++..+ +. +.|..++++... +.+.+...||.+++...+
T Consensus 190 -----------~~----~egi~i~~~al~~Ia~~s---~G-dlR~aln~Ldql---~~~~~~~~It~~~v~~ll 241 (584)
T PRK14952 190 -----------CE----QEGVVVDDAVYPLVIRAG---GG-SPRDTLSVLDQL---LAGAADTHVTYQRALGLL 241 (584)
T ss_pred -----------HH----HcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHH---HhccCCCCcCHHHHHHHH
Confidence 11 124679999988886654 22 589888888654 334456678888776653
No 109
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=1.9e-13 Score=154.56 Aligned_cols=234 Identities=18% Similarity=0.187 Sum_probs=143.6
Q ss_pred cCCCCCCCCceechHHHHHHHHHhcccCCCce-EEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccc
Q 006254 87 YGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL 165 (653)
Q Consensus 87 ~~~~~~~f~~IvGq~~~k~aL~~~av~p~~~g-VLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~ 165 (653)
.+.+|..|++|+||+.+++.|..++......+ +||+||+|+|||++|+.+++.+ ||........|..|
T Consensus 8 ~k~rP~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l-----------~c~~~~~~~pcg~C 76 (527)
T PRK14969 8 RKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSL-----------NCETGVTATPCGVC 76 (527)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHh-----------cCCCCCCCCCCCCC
Confidence 35678899999999999999976665555555 6999999999999999999987 35322112233333
Q ss_pred cccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHH
Q 006254 166 DEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLL 245 (653)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll 245 (653)
.......... ...++.+..... .|.-++.. +... ....| ...+..|+||||++.|+.+.+|.||
T Consensus 77 ~~C~~i~~~~-------~~d~~ei~~~~~----~~vd~ir~-l~~~-~~~~p---~~~~~kVvIIDEad~ls~~a~naLL 140 (527)
T PRK14969 77 SACLEIDSGR-------FVDLIEVDAASN----TQVDAMRE-LLDN-AQYAP---TRGRFKVYIIDEVHMLSKSAFNAML 140 (527)
T ss_pred HHHHHHhcCC-------CCceeEeecccc----CCHHHHHH-HHHH-HhhCc---ccCCceEEEEcCcccCCHHHHHHHH
Confidence 3211110000 112333322110 11111111 1110 01111 1234569999999999999999999
Q ss_pred HHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhh
Q 006254 246 NVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMV 325 (653)
Q Consensus 246 ~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~ 325 (653)
..+++-. ..+.+|.+|| +...+.+.+++|+..+ .+. +.+.++..+.+..
T Consensus 141 K~LEepp-------------~~~~fIL~t~-d~~kil~tI~SRc~~~-~f~-~l~~~~i~~~L~~--------------- 189 (527)
T PRK14969 141 KTLEEPP-------------EHVKFILATT-DPQKIPVTVLSRCLQF-NLK-QMPPPLIVSHLQH--------------- 189 (527)
T ss_pred HHHhCCC-------------CCEEEEEEeC-ChhhCchhHHHHHHHH-hcC-CCCHHHHHHHHHH---------------
Confidence 9998742 2455666666 5556667799998555 776 4455433322221
Q ss_pred hhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHHH
Q 006254 326 EEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (653)
Q Consensus 326 ~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~ 400 (653)
+.. ...+.+++++++.|+..+. . +.|..+.++..+-++ |...|+.++|...+.
T Consensus 190 ----------il~----~egi~~~~~al~~la~~s~---G-slr~al~lldqai~~----~~~~I~~~~v~~~~~ 242 (527)
T PRK14969 190 ----------ILE----QENIPFDATALQLLARAAA---G-SMRDALSLLDQAIAY----GGGTVNESEVRAMLG 242 (527)
T ss_pred ----------HHH----HcCCCCCHHHHHHHHHHcC---C-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHHC
Confidence 111 1247789999998887642 2 588888887554332 567899999887664
No 110
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.54 E-value=1.4e-13 Score=161.71 Aligned_cols=232 Identities=21% Similarity=0.160 Sum_probs=136.5
Q ss_pred cCCCCCCCCceechHHHHHHHHHhcccCCCce-EEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccc
Q 006254 87 YGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL 165 (653)
Q Consensus 87 ~~~~~~~f~~IvGq~~~k~aL~~~av~p~~~g-VLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~ 165 (653)
.++++..|++||||+.+++.|..++......| +||+||+|||||++|+.|++.| ||........|..|
T Consensus 7 ~KyRP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L-----------~C~~~~~~~pCg~C 75 (824)
T PRK07764 7 RRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSL-----------NCVEGPTSTPCGEC 75 (824)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh-----------CcccCCCCCCCccc
Confidence 46788999999999999999876655545555 7999999999999999999987 45332222344444
Q ss_pred cccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHH
Q 006254 166 DEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLL 245 (653)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll 245 (653)
.......... .....|+.+..... .++|--+.+.+- ..+.+ ......|+||||++.|+...+|.||
T Consensus 76 ~sC~~~~~g~-----~~~~dv~eidaas~-----~~Vd~iR~l~~~-~~~~p---~~~~~KV~IIDEad~lt~~a~NaLL 141 (824)
T PRK07764 76 DSCVALAPGG-----PGSLDVTEIDAASH-----GGVDDARELRER-AFFAP---AESRYKIFIIDEAHMVTPQGFNALL 141 (824)
T ss_pred HHHHHHHcCC-----CCCCcEEEeccccc-----CCHHHHHHHHHH-HHhch---hcCCceEEEEechhhcCHHHHHHHH
Confidence 4422211110 01233444432210 112211212110 01111 1234569999999999999999999
Q ss_pred HHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhh
Q 006254 246 NVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMV 325 (653)
Q Consensus 246 ~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~ 325 (653)
..|++-. ..++||.+|| +...|.+.|++|+..+ .+. +...+...+.+....
T Consensus 142 K~LEEpP-------------~~~~fIl~tt-~~~kLl~TIrSRc~~v-~F~-~l~~~~l~~~L~~il------------- 192 (824)
T PRK07764 142 KIVEEPP-------------EHLKFIFATT-EPDKVIGTIRSRTHHY-PFR-LVPPEVMRGYLERIC------------- 192 (824)
T ss_pred HHHhCCC-------------CCeEEEEEeC-ChhhhhHHHHhheeEE-Eee-CCCHHHHHHHHHHHH-------------
Confidence 9999742 2445666665 4445778899998665 776 344544333332110
Q ss_pred hhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHH
Q 006254 326 EEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDL 395 (653)
Q Consensus 326 ~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv 395 (653)
...++.++++++.+|+.++ +. +.|..+.++... .++.+...||.++|
T Consensus 193 ----------------~~EGv~id~eal~lLa~~s---gG-dlR~Al~eLEKL---ia~~~~~~IT~e~V 239 (824)
T PRK07764 193 ----------------AQEGVPVEPGVLPLVIRAG---GG-SVRDSLSVLDQL---LAGAGPEGVTYERA 239 (824)
T ss_pred ----------------HHcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHH---HhhcCCCCCCHHHH
Confidence 0124667777777776554 22 466666655432 23334445655544
No 111
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.52 E-value=2e-13 Score=139.38 Aligned_cols=204 Identities=16% Similarity=0.094 Sum_probs=129.0
Q ss_pred cccCCCCCCCCceechHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccc
Q 006254 85 DSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDG 164 (653)
Q Consensus 85 ~~~~~~~~~f~~IvGq~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~ 164 (653)
...+++|..|++++||+.+..+|.-+.......+.|++||||||||+.|++++..+. |-.-.+...|+.
T Consensus 26 wteKYrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~-----------~~~~~~~rvl~l 94 (346)
T KOG0989|consen 26 WTEKYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALN-----------CEQLFPCRVLEL 94 (346)
T ss_pred hHHHhCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhc-----------Cccccccchhhh
Confidence 344678899999999999999997766654556799999999999999999999884 311112222332
Q ss_pred ccccccccccccccccccCCCeEeCCCCCcccceeeec-----chhhhhccCC-ccccccccccccCceEEecccccCCH
Q 006254 165 LDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSV-----DVEESVKTGT-TVFQPGLLAEAHRGVLYIDEINLLDE 238 (653)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~-----d~~~~~~~g~-~~~~~Gll~~A~~giL~IDEi~~l~~ 238 (653)
|. +.++-.+.+ ++++...... ....|-. ---|++|||.+.|..
T Consensus 95 na---------------------------SderGisvvr~Kik~fakl~~~~~~~~~~~~~----~fKiiIlDEcdsmts 143 (346)
T KOG0989|consen 95 NA---------------------------SDERGISVVREKIKNFAKLTVLLKRSDGYPCP----PFKIIILDECDSMTS 143 (346)
T ss_pred cc---------------------------cccccccchhhhhcCHHHHhhccccccCCCCC----cceEEEEechhhhhH
Confidence 22 221111100 0000000000 0000100 014999999999999
Q ss_pred HHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhh
Q 006254 239 GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERS 318 (653)
Q Consensus 239 ~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~ 318 (653)
+.|.+|...|+.-. -..++|.-|| .-..+..++.+|+..+ .+. +...+...+.++ .
T Consensus 144 daq~aLrr~mE~~s-------------~~trFiLIcn-ylsrii~pi~SRC~Kf-rFk-~L~d~~iv~rL~---~----- 199 (346)
T KOG0989|consen 144 DAQAALRRTMEDFS-------------RTTRFILICN-YLSRIIRPLVSRCQKF-RFK-KLKDEDIVDRLE---K----- 199 (346)
T ss_pred HHHHHHHHHHhccc-------------cceEEEEEcC-ChhhCChHHHhhHHHh-cCC-CcchHHHHHHHH---H-----
Confidence 99999999999732 1234445556 7778889999999877 454 333332222222 1
Q ss_pred hHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 006254 319 NEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAK 379 (653)
Q Consensus 319 ~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ar 379 (653)
| ....++.+++++++.|+.++.. ++|.++.+++-+.
T Consensus 200 -----------------I----a~~E~v~~d~~al~~I~~~S~G----dLR~Ait~Lqsls 235 (346)
T KOG0989|consen 200 -----------------I----ASKEGVDIDDDALKLIAKISDG----DLRRAITTLQSLS 235 (346)
T ss_pred -----------------H----HHHhCCCCCHHHHHHHHHHcCC----cHHHHHHHHHHhh
Confidence 1 1124688999999999887632 5899998886544
No 112
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1.4e-13 Score=136.38 Aligned_cols=220 Identities=21% Similarity=0.279 Sum_probs=136.7
Q ss_pred CCCCCCCceechHHHHHHHHHhc--------------ccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCC
Q 006254 89 RQFFPLAAVVGQDAIKTALLLGA--------------IDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANAD 154 (653)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~~~a--------------v~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~ 154 (653)
++.++..+|-|.+--|+.+..+. ++| ..|||++||||||||+||+++++.-
T Consensus 149 kpdvsy~diggld~qkqeireavelplt~~~ly~qigidp-prgvllygppg~gktml~kava~~t-------------- 213 (408)
T KOG0727|consen 149 KPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDP-PRGVLLYGPPGTGKTMLAKAVANHT-------------- 213 (408)
T ss_pred CCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCC-CcceEEeCCCCCcHHHHHHHHhhcc--------------
Confidence 45678899999886666553322 233 4689999999999999999999853
Q ss_pred CCCCCcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccc---cCceEEec
Q 006254 155 PTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYID 231 (653)
Q Consensus 155 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~ID 231 (653)
...|+.+-.+....+++| +|-+- ....|..| ...|+|||
T Consensus 214 ----------------------------~a~firvvgsefvqkylg---------egprm-vrdvfrlakenapsiifid 255 (408)
T KOG0727|consen 214 ----------------------------TAAFIRVVGSEFVQKYLG---------EGPRM-VRDVFRLAKENAPSIIFID 255 (408)
T ss_pred ----------------------------chheeeeccHHHHHHHhc---------cCcHH-HHHHHHHHhccCCcEEEee
Confidence 356665544444444444 45432 12233332 46799999
Q ss_pred ccccC-----------CHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHh--hhcccccccCC
Q 006254 232 EINLL-----------DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLP 298 (653)
Q Consensus 232 Ei~~l-----------~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLld--Rf~~~v~l~~p 298 (653)
||+.+ +.++|..|+..+..-. |. ....++-+|.+|| ....|+|+|++ |++..|+++.|
T Consensus 256 eidaiatkrfdaqtgadrevqril~ellnqmd------gf--dq~~nvkvimatn-radtldpallrpgrldrkiefplp 326 (408)
T KOG0727|consen 256 EIDAIATKRFDAQTGADREVQRILIELLNQMD------GF--DQTTNVKVIMATN-RADTLDPALLRPGRLDRKIEFPLP 326 (408)
T ss_pred hhhhHhhhhccccccccHHHHHHHHHHHHhcc------Cc--CcccceEEEEecC-cccccCHhhcCCccccccccCCCC
Confidence 99864 5678888888886532 22 1234678999999 66678999997 99999998754
Q ss_pred CCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHH-HHHHHHHHHhcCCCCcchHHHHHHH
Q 006254 299 MTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQ-LKYLVMEALRGGCQGHRAELYAARV 377 (653)
Q Consensus 299 ~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~-l~~l~~~~~~~~i~s~R~~i~llr~ 377 (653)
++.++.-+..-+ .....+++++ ++-+ .|....+ |.-..-.++.-
T Consensus 327 -drrqkrlvf~ti-------------------------------tskm~ls~~vdle~~--v~rpdki-s~adi~aicqe 371 (408)
T KOG0727|consen 327 -DRRQKRLVFSTI-------------------------------TSKMNLSDEVDLEDL--VARPDKI-SGADINAICQE 371 (408)
T ss_pred -chhhhhhhHHhh-------------------------------hhcccCCcccCHHHH--hcCcccc-chhhHHHHHHH
Confidence 444333222211 1111222221 1111 1222222 22222234555
Q ss_pred HHHHHHHcCCCCccHHHHHHHHHHHcCC
Q 006254 378 AKCLAALEGREKVNVDDLKKAVELVILP 405 (653)
Q Consensus 378 Ara~Aal~gr~~Vt~eDv~~A~~lvl~h 405 (653)
|.-+|.-+.|..|...|+++|..-+...
T Consensus 372 agm~avr~nryvvl~kd~e~ay~~~vk~ 399 (408)
T KOG0727|consen 372 AGMLAVRENRYVVLQKDFEKAYKTVVKK 399 (408)
T ss_pred HhHHHHHhcceeeeHHHHHHHHHhhcCC
Confidence 6667777889999999999998866543
No 113
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=3.6e-13 Score=152.49 Aligned_cols=232 Identities=19% Similarity=0.189 Sum_probs=141.6
Q ss_pred ccCCCCCCCCceechHHHHHHHHHhcccCC-CceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccc
Q 006254 86 SYGRQFFPLAAVVGQDAIKTALLLGAIDRE-IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDG 164 (653)
Q Consensus 86 ~~~~~~~~f~~IvGq~~~k~aL~~~av~p~-~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~ 164 (653)
..+.+|..|++|+||+.++..|.-++-... ...+||+||+|||||++|+.|++.+. |........|..
T Consensus 7 a~KyRP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~-----------C~~~~~~~pCg~ 75 (624)
T PRK14959 7 TARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALN-----------CETAPTGEPCNT 75 (624)
T ss_pred HHHhCCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhcc-----------ccCCCCCCCCcc
Confidence 345788999999999999988865544332 45688999999999999999999873 432222234444
Q ss_pred ccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHH
Q 006254 165 LDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLL 244 (653)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~L 244 (653)
|........ + ....++.+.... -.|.-++ +.+..- ....+ ......||||||++.|+...++.|
T Consensus 76 C~sC~~i~~-g------~hpDv~eId~a~----~~~Id~i-R~L~~~-~~~~p---~~g~~kVIIIDEad~Lt~~a~naL 139 (624)
T PRK14959 76 CEQCRKVTQ-G------MHVDVVEIDGAS----NRGIDDA-KRLKEA-IGYAP---MEGRYKVFIIDEAHMLTREAFNAL 139 (624)
T ss_pred cHHHHHHhc-C------CCCceEEEeccc----ccCHHHH-HHHHHH-HHhhh---hcCCceEEEEEChHhCCHHHHHHH
Confidence 433211100 0 112234342211 0111111 111100 00001 123456999999999999999999
Q ss_pred HHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhh
Q 006254 245 LNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKM 324 (653)
Q Consensus 245 l~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~ 324 (653)
+..|++-. ..+++|.+|| +...+.+.|++|+..+ .+. +++.++..+++...
T Consensus 140 Lk~LEEP~-------------~~~ifILaTt-~~~kll~TI~SRcq~i-~F~-pLs~~eL~~~L~~i------------- 190 (624)
T PRK14959 140 LKTLEEPP-------------ARVTFVLATT-EPHKFPVTIVSRCQHF-TFT-RLSEAGLEAHLTKV------------- 190 (624)
T ss_pred HHHhhccC-------------CCEEEEEecC-ChhhhhHHHHhhhhcc-ccC-CCCHHHHHHHHHHH-------------
Confidence 99998742 2456777777 5556777899998654 776 55655544443311
Q ss_pred hhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHH
Q 006254 325 VEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKK 397 (653)
Q Consensus 325 ~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~ 397 (653)
. ....+.+++++++.|++++. . +.|..+.++..+ + ..|...|+.++|..
T Consensus 191 ------------l----~~egi~id~eal~lIA~~s~---G-dlR~Al~lLeql---l-~~g~~~It~d~V~~ 239 (624)
T PRK14959 191 ------------L----GREGVDYDPAAVRLIARRAA---G-SVRDSMSLLGQV---L-ALGESRLTIDGARG 239 (624)
T ss_pred ------------H----HHcCCCCCHHHHHHHHHHcC---C-CHHHHHHHHHHH---H-HhcCCCcCHHHHHH
Confidence 0 01246799999999887653 2 578888888633 2 23555788877643
No 114
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.51 E-value=1.1e-13 Score=154.06 Aligned_cols=175 Identities=17% Similarity=0.214 Sum_probs=109.2
Q ss_pred CCCCCCCCceechHHHHHHHHHhcc----c---------CCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCC
Q 006254 88 GRQFFPLAAVVGQDAIKTALLLGAI----D---------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANAD 154 (653)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~~~av----~---------p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~ 154 (653)
+.+..+|++|.|.+..+..+..+.. . +...||||+||||||||++|+++++.+...-.. +
T Consensus 175 ~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~-----~-- 247 (512)
T TIGR03689 175 EVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGA-----E-- 247 (512)
T ss_pred cCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhcccccc-----c--
Confidence 3467789999999998887743322 1 124679999999999999999999987520000 0
Q ss_pred CCCCCcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCcccccc--ccccccCceEEecc
Q 006254 155 PTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPG--LLAEAHRGVLYIDE 232 (653)
Q Consensus 155 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~G--ll~~A~~giL~IDE 232 (653)
......|+.+........++|.. ++.+. ..|... ........||||||
T Consensus 248 -------------------------~~~~~~fl~v~~~eLl~kyvGet--e~~ir---~iF~~Ar~~a~~g~p~IIfIDE 297 (512)
T TIGR03689 248 -------------------------TGDKSYFLNIKGPELLNKYVGET--ERQIR---LIFQRAREKASDGRPVIVFFDE 297 (512)
T ss_pred -------------------------cCCceeEEeccchhhcccccchH--HHHHH---HHHHHHHHHhhcCCCceEEEeh
Confidence 00122344443333333344421 11110 001100 00111356999999
Q ss_pred cccCCH------------HHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHh--hhcccccccCC
Q 006254 233 INLLDE------------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLP 298 (653)
Q Consensus 233 i~~l~~------------~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLld--Rf~~~v~l~~p 298 (653)
++.+-. .+++.||..|+.- +. ..++++|+||| .+..|+++|++ ||+..|+++.
T Consensus 298 iD~L~~~R~~~~s~d~e~~il~~LL~~LDgl----~~-------~~~ViVI~ATN-~~d~LDpALlRpGRfD~~I~~~~- 364 (512)
T TIGR03689 298 MDSIFRTRGSGVSSDVETTVVPQLLSELDGV----ES-------LDNVIVIGASN-REDMIDPAILRPGRLDVKIRIER- 364 (512)
T ss_pred hhhhhcccCCCccchHHHHHHHHHHHHhccc----cc-------CCceEEEeccC-ChhhCCHhhcCccccceEEEeCC-
Confidence 997621 2456677766531 11 12578999999 67789999998 9999999994
Q ss_pred CCHhhHHHHHHHHH
Q 006254 299 MTFEDRVAAVGIAT 312 (653)
Q Consensus 299 ~~~~~r~~I~~~~~ 312 (653)
++.++|.+|+....
T Consensus 365 Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 365 PDAEAAADIFSKYL 378 (512)
T ss_pred CCHHHHHHHHHHHh
Confidence 58999999987653
No 115
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.51 E-value=1.5e-13 Score=163.79 Aligned_cols=211 Identities=25% Similarity=0.319 Sum_probs=135.2
Q ss_pred CceechHHHHHHHHHhcc-------cCC--CceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccc
Q 006254 95 AAVVGQDAIKTALLLGAI-------DRE--IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL 165 (653)
Q Consensus 95 ~~IvGq~~~k~aL~~~av-------~p~--~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~ 165 (653)
..|+||+.++..+..++. +|. .+.+||.||+|||||++|++||..+..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~----------------------- 621 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFD----------------------- 621 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcC-----------------------
Confidence 469999999888843322 221 356999999999999999999998741
Q ss_pred cccccccccccccccccCCCeEeCCCCC-----cccceeeecchhhhhccCCccc-ccccccc----ccCceEEeccccc
Q 006254 166 DEKAEYDTAGNLKTQIARSPFVQIPLGV-----TEDRLIGSVDVEESVKTGTTVF-QPGLLAE----AHRGVLYIDEINL 235 (653)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~fv~l~~~~-----~~~~l~G~~d~~~~~~~g~~~~-~~Gll~~----A~~giL~IDEi~~ 235 (653)
...+|+.+..+. ...+++|... |...+ +.|.|.. ....|||||||+.
T Consensus 622 ----------------~~~~~i~~d~s~~~~~~~~~~l~g~~~-------g~~g~~~~g~l~~~v~~~p~~vlllDeiek 678 (852)
T TIGR03346 622 ----------------DEDAMVRIDMSEYMEKHSVARLIGAPP-------GYVGYEEGGQLTEAVRRKPYSVVLFDEVEK 678 (852)
T ss_pred ----------------CCCcEEEEechhhcccchHHHhcCCCC-------CccCcccccHHHHHHHcCCCcEEEEecccc
Confidence 012333322211 1223343211 00000 1122221 2246999999999
Q ss_pred CCHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCC------------------------CCcccHHHHhhhcc
Q 006254 236 LDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE------------------------EGVVREHLLDRIAI 291 (653)
Q Consensus 236 l~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~------------------------eg~l~~aLldRf~~ 291 (653)
+++++++.|++++++|.++- ..|..+.+. +.+||+|||.. .+.|+|+|++||+.
T Consensus 679 a~~~v~~~Ll~~l~~g~l~d-~~g~~vd~r-n~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~ 756 (852)
T TIGR03346 679 AHPDVFNVLLQVLDDGRLTD-GQGRTVDFR-NTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDE 756 (852)
T ss_pred CCHHHHHHHHHHHhcCceec-CCCeEEecC-CcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCe
Confidence 99999999999999998652 234334333 57799999961 12477999999998
Q ss_pred cccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchH
Q 006254 292 NLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAE 371 (653)
Q Consensus 292 ~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~ 371 (653)
++.+. |.+.++..+|+.+...+.. ..+. .+ .. .+.++++++++|++.+|... .+.|..
T Consensus 757 IivF~-PL~~e~l~~I~~l~L~~l~-----------------~~l~-~~-~~-~l~i~~~a~~~L~~~~~~~~-~gaR~L 814 (852)
T TIGR03346 757 IVVFH-PLGREQIARIVEIQLGRLR-----------------KRLA-ER-KI-TLELSDAALDFLAEAGYDPV-YGARPL 814 (852)
T ss_pred EEecC-CcCHHHHHHHHHHHHHHHH-----------------HHHH-HC-CC-eecCCHHHHHHHHHhCCCCC-CCchhH
Confidence 86665 8899999999887655422 1111 11 12 37899999999999988321 134544
Q ss_pred HHHH
Q 006254 372 LYAA 375 (653)
Q Consensus 372 i~ll 375 (653)
..++
T Consensus 815 ~~~i 818 (852)
T TIGR03346 815 KRAI 818 (852)
T ss_pred HHHH
Confidence 4443
No 116
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=6.2e-14 Score=153.21 Aligned_cols=160 Identities=23% Similarity=0.311 Sum_probs=118.5
Q ss_pred CCCCCceechHHHHHHHH---HhcccCC---------CceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCC
Q 006254 91 FFPLAAVVGQDAIKTALL---LGAIDRE---------IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCP 158 (653)
Q Consensus 91 ~~~f~~IvGq~~~k~aL~---~~av~p~---------~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~ 158 (653)
...|++|-|.+.....|. +....|. ..||||.||||||||+||++|+..+
T Consensus 186 nv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel------------------ 247 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL------------------ 247 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc------------------
Confidence 456999999998777662 1122231 3679999999999999999999988
Q ss_pred CcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccc---cCceEEeccccc
Q 006254 159 DEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEINL 235 (653)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~IDEi~~ 235 (653)
..||+.++.....+.+.|.- ++.+ .-+|.+| ..+|+|||||+.
T Consensus 248 ------------------------~vPf~~isApeivSGvSGES--Ekki--------RelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 248 ------------------------GVPFLSISAPEIVSGVSGES--EKKI--------RELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred ------------------------CCceEeecchhhhcccCccc--HHHH--------HHHHHHHhccCCeEEEeecccc
Confidence 48999888776555566632 1111 1244444 357999999997
Q ss_pred CCH-----------HHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHh--hhcccccccCCCCHh
Q 006254 236 LDE-----------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPMTFE 302 (653)
Q Consensus 236 l~~-----------~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLld--Rf~~~v~l~~p~~~~ 302 (653)
+.+ .++..||..|++-.+. ...| ..++|||||| .+..|+++|++ ||+.-|.+..| +..
T Consensus 294 I~pkRe~aqreMErRiVaQLlt~mD~l~~~-~~~g------~~VlVIgATn-RPDslDpaLRRaGRFdrEI~l~vP-~e~ 364 (802)
T KOG0733|consen 294 ITPKREEAQREMERRIVAQLLTSMDELSNE-KTKG------DPVLVIGATN-RPDSLDPALRRAGRFDREICLGVP-SET 364 (802)
T ss_pred cccchhhHHHHHHHHHHHHHHHhhhccccc-ccCC------CCeEEEecCC-CCcccCHHHhccccccceeeecCC-chH
Confidence 643 5789999999865421 1112 3589999999 88889999997 99999999975 889
Q ss_pred hHHHHHHHH
Q 006254 303 DRVAAVGIA 311 (653)
Q Consensus 303 ~r~~I~~~~ 311 (653)
.|.+|++..
T Consensus 365 aR~~IL~~~ 373 (802)
T KOG0733|consen 365 AREEILRII 373 (802)
T ss_pred HHHHHHHHH
Confidence 999998744
No 117
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.50 E-value=2.2e-13 Score=161.67 Aligned_cols=213 Identities=17% Similarity=0.210 Sum_probs=136.3
Q ss_pred CCCCCCCceechHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccccccc
Q 006254 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (653)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~ 168 (653)
.++-.++.|+|+++..+.++..+......+++|+||||||||++|+.|+..+..-.
T Consensus 181 ~r~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~------------------------ 236 (852)
T TIGR03345 181 AREGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGD------------------------ 236 (852)
T ss_pred hcCCCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCC------------------------
Confidence 35667899999999888886656666778899999999999999999999875210
Q ss_pred ccccccccccccccCCCeEeCCCCCcc--cceeeecchhhhhccCCccccccccccc----cCceEEecccccCCH----
Q 006254 169 AEYDTAGNLKTQIARSPFVQIPLGVTE--DRLIGSVDVEESVKTGTTVFQPGLLAEA----HRGVLYIDEINLLDE---- 238 (653)
Q Consensus 169 ~~~~~~~~~~~~~~~~~fv~l~~~~~~--~~l~G~~d~~~~~~~g~~~~~~Gll~~A----~~giL~IDEi~~l~~---- 238 (653)
.+....+..++.+..+... ....|.+ +..+ ..++..+ .+.|||||||+.+..
T Consensus 237 --------v~~~l~~~~i~~l~l~~l~ag~~~~ge~--e~~l--------k~ii~e~~~~~~~~ILfIDEih~l~~~g~~ 298 (852)
T TIGR03345 237 --------VPPALRNVRLLSLDLGLLQAGASVKGEF--ENRL--------KSVIDEVKASPQPIILFIDEAHTLIGAGGQ 298 (852)
T ss_pred --------CCccccCCeEEEeehhhhhcccccchHH--HHHH--------HHHHHHHHhcCCCeEEEEeChHHhccCCCc
Confidence 0001124455555444321 1222321 1111 1122211 356999999999852
Q ss_pred ----HHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCC----cccHHHHhhhcccccccCCCCHhhHHHHHHH
Q 006254 239 ----GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG----VVREHLLDRIAINLSADLPMTFEDRVAAVGI 310 (653)
Q Consensus 239 ----~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg----~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~ 310 (653)
+..+.|+.+++.|. +.+|||||+++. +++++|.+||.. |.|. +++.++...|++-
T Consensus 299 ~~~~d~~n~Lkp~l~~G~---------------l~~IgaTT~~e~~~~~~~d~AL~rRf~~-i~v~-eps~~~~~~iL~~ 361 (852)
T TIGR03345 299 AGQGDAANLLKPALARGE---------------LRTIAATTWAEYKKYFEKDPALTRRFQV-VKVE-EPDEETAIRMLRG 361 (852)
T ss_pred cccccHHHHhhHHhhCCC---------------eEEEEecCHHHHhhhhhccHHHHHhCeE-EEeC-CCCHHHHHHHHHH
Confidence 23457888888875 579999998654 588999999975 5888 5688988888753
Q ss_pred HHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcC
Q 006254 311 ATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGG 364 (653)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~ 364 (653)
.....+.. ..+....+.+..-+..+..++++..++|.+++.|-+.|+...
T Consensus 362 ~~~~~e~~----~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdlldea~a~~~ 411 (852)
T TIGR03345 362 LAPVLEKH----HGVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDTACARVA 411 (852)
T ss_pred HHHhhhhc----CCCeeCHHHHHHHHHHcccccccccCccHHHHHHHHHHHHHH
Confidence 32221110 012223344555555566666666777777777766666543
No 118
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=8.9e-13 Score=150.08 Aligned_cols=231 Identities=23% Similarity=0.255 Sum_probs=143.9
Q ss_pred CCCCCCCCceechHHHHHHHHHhcccCCCce-EEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccccc
Q 006254 88 GRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLD 166 (653)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~~~av~p~~~g-VLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~ 166 (653)
+.+|..|++|+||+++++.|.-++.....++ +||+||+|||||++|+.+++.+. |--......|..|.
T Consensus 9 k~rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~-----------c~~~~~~~pC~~C~ 77 (559)
T PRK05563 9 KWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVN-----------CLNPPDGEPCNECE 77 (559)
T ss_pred HhCCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-----------CCCCCCCCCCCccH
Confidence 4678899999999999999866555444455 78899999999999999999863 42211223444443
Q ss_pred ccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHHH
Q 006254 167 EKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLN 246 (653)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~ 246 (653)
........ ....++.+..... .| +|--+.+.+- ..+.| ..+...|+||||++.|+...++.|+.
T Consensus 78 ~C~~i~~g-------~~~dv~eidaas~----~~-vd~ir~i~~~-v~~~p---~~~~~kViIIDE~~~Lt~~a~naLLK 141 (559)
T PRK05563 78 ICKAITNG-------SLMDVIEIDAASN----NG-VDEIRDIRDK-VKYAP---SEAKYKVYIIDEVHMLSTGAFNALLK 141 (559)
T ss_pred HHHHHhcC-------CCCCeEEeecccc----CC-HHHHHHHHHH-HhhCc---ccCCeEEEEEECcccCCHHHHHHHHH
Confidence 32211111 1234454433210 11 1100111100 01111 13445699999999999999999999
Q ss_pred HHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhhh
Q 006254 247 VLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVE 326 (653)
Q Consensus 247 ~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~ 326 (653)
.+++- |..+++|.+|+ +...+.+.+++|+..+ .+. +++.++..+.+...
T Consensus 142 tLEep-------------p~~~ifIlatt-~~~ki~~tI~SRc~~~-~f~-~~~~~ei~~~L~~i--------------- 190 (559)
T PRK05563 142 TLEEP-------------PAHVIFILATT-EPHKIPATILSRCQRF-DFK-RISVEDIVERLKYI--------------- 190 (559)
T ss_pred HhcCC-------------CCCeEEEEEeC-ChhhCcHHHHhHheEE-ecC-CCCHHHHHHHHHHH---------------
Confidence 99864 33456666665 5567888999999765 776 44555433333211
Q ss_pred hhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHH
Q 006254 327 EETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKA 398 (653)
Q Consensus 327 ~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A 398 (653)
. ...++.+++++++.|+..+. . +.|..+.++..+..+ +...|+.+||..+
T Consensus 191 ----------~----~~egi~i~~~al~~ia~~s~---G-~~R~al~~Ldq~~~~----~~~~It~~~V~~v 240 (559)
T PRK05563 191 ----------L----DKEGIEYEDEALRLIARAAE---G-GMRDALSILDQAISF----GDGKVTYEDALEV 240 (559)
T ss_pred ----------H----HHcCCCCCHHHHHHHHHHcC---C-CHHHHHHHHHHHHHh----ccCCCCHHHHHHH
Confidence 1 01257899999988887642 2 689888888655433 3457888887665
No 119
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1.9e-13 Score=136.01 Aligned_cols=221 Identities=20% Similarity=0.254 Sum_probs=149.6
Q ss_pred CCCCCCceechHHHHHHHHHhcccCC-------------CceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCC
Q 006254 90 QFFPLAAVVGQDAIKTALLLGAIDRE-------------IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT 156 (653)
Q Consensus 90 ~~~~f~~IvGq~~~k~aL~~~av~p~-------------~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~ 156 (653)
+.-..++|-|.+.-++.|..+.+-|. ..|||+|||||||||.+||+.+..-
T Consensus 166 PtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT---------------- 229 (424)
T KOG0652|consen 166 PTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT---------------- 229 (424)
T ss_pred CcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc----------------
Confidence 34467899999999998877777662 2569999999999999999998853
Q ss_pred CCCcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccc---cCceEEeccc
Q 006254 157 CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEI 233 (653)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~IDEi 233 (653)
+..|..+...-....++|. |.+- ....|+.| .+.|+||||+
T Consensus 230 --------------------------~aTFLKLAgPQLVQMfIGd---------GAkL-VRDAFaLAKEkaP~IIFIDEl 273 (424)
T KOG0652|consen 230 --------------------------NATFLKLAGPQLVQMFIGD---------GAKL-VRDAFALAKEKAPTIIFIDEL 273 (424)
T ss_pred --------------------------cchHHHhcchHHHhhhhcc---------hHHH-HHHHHHHhhccCCeEEEEech
Confidence 4555555544555566672 3321 12233333 4689999999
Q ss_pred ccC-----------CHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHh--hhcccccccCCCC
Q 006254 234 NLL-----------DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPMT 300 (653)
Q Consensus 234 ~~l-----------~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLld--Rf~~~v~l~~p~~ 300 (653)
+.+ +.++|...|.++..-. |.+ ...++-+|++|| .-..|+|+|++ |++..|+++.| .
T Consensus 274 DAIGtKRfDSek~GDREVQRTMLELLNQLD------GFs--s~~~vKviAATN-RvDiLDPALlRSGRLDRKIEfP~P-n 343 (424)
T KOG0652|consen 274 DAIGTKRFDSEKAGDREVQRTMLELLNQLD------GFS--SDDRVKVIAATN-RVDILDPALLRSGRLDRKIEFPHP-N 343 (424)
T ss_pred hhhccccccccccccHHHHHHHHHHHHhhc------CCC--CccceEEEeecc-cccccCHHHhhcccccccccCCCC-C
Confidence 865 4578888888887532 332 223678999999 67788999997 99999999865 7
Q ss_pred HhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHH-HHHHHHHHHhcCCCCcchHHHHHHHHH
Q 006254 301 FEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQ-LKYLVMEALRGGCQGHRAELYAARVAK 379 (653)
Q Consensus 301 ~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~-l~~l~~~~~~~~i~s~R~~i~llr~Ar 379 (653)
.+.|..|++.. +|+ ..+++++ .+.|+.....+|..... .+.--|.
T Consensus 344 e~aRarIlQIH---------------------------sRK----Mnv~~DvNfeELaRsTddFNGAQcK---AVcVEAG 389 (424)
T KOG0652|consen 344 EEARARILQIH---------------------------SRK----MNVSDDVNFEELARSTDDFNGAQCK---AVCVEAG 389 (424)
T ss_pred hHHHHHHHHHh---------------------------hhh----cCCCCCCCHHHHhhcccccCchhhe---eeehhhh
Confidence 77787776631 111 1222222 34455555555543221 2222455
Q ss_pred HHHHHcCCCCccHHHHHHHHHHHcCCC
Q 006254 380 CLAALEGREKVNVDDLKKAVELVILPR 406 (653)
Q Consensus 380 a~Aal~gr~~Vt~eDv~~A~~lvl~hR 406 (653)
-+|.-.+.++|+-+|..+++.-|....
T Consensus 390 MiALRr~atev~heDfmegI~eVqakK 416 (424)
T KOG0652|consen 390 MIALRRGATEVTHEDFMEGILEVQAKK 416 (424)
T ss_pred HHHHhcccccccHHHHHHHHHHHHHhh
Confidence 567778899999999999988776643
No 120
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.49 E-value=2e-13 Score=159.26 Aligned_cols=164 Identities=18% Similarity=0.223 Sum_probs=105.0
Q ss_pred CCCCCceechHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccccccccc
Q 006254 91 FFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAE 170 (653)
Q Consensus 91 ~~~f~~IvGq~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~ 170 (653)
.-.++.++|.+...+.+...+......++||+||||||||++|++++..+-... ++
T Consensus 182 ~g~~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~-vP----------------------- 237 (758)
T PRK11034 182 VGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGD-VP----------------------- 237 (758)
T ss_pred cCCCCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcC-CC-----------------------
Confidence 345778999999888886655555678899999999999999999998652100 00
Q ss_pred ccccccccccccCCCeEeCCCCCcc--cceeeecchhhhhccCCccccccccccccCceEEecccccC---------CHH
Q 006254 171 YDTAGNLKTQIARSPFVQIPLGVTE--DRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLL---------DEG 239 (653)
Q Consensus 171 ~~~~~~~~~~~~~~~fv~l~~~~~~--~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l---------~~~ 239 (653)
....+..++.+..+... ..+.|.. +..+ ...-..+....++|||||||+.+ ..+
T Consensus 238 --------~~l~~~~~~~l~~~~llaG~~~~Ge~--e~rl-----~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d 302 (758)
T PRK11034 238 --------EVMADCTIYSLDIGSLLAGTKYRGDF--EKRF-----KALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVD 302 (758)
T ss_pred --------chhcCCeEEeccHHHHhcccchhhhH--HHHH-----HHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHH
Confidence 00112333333221110 1112210 0000 00001223345689999999977 234
Q ss_pred HHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCC----cccHHHHhhhcccccccCCCCHhhHHHHHHH
Q 006254 240 ISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG----VVREHLLDRIAINLSADLPMTFEDRVAAVGI 310 (653)
Q Consensus 240 ~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg----~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~ 310 (653)
..+.|..+++.|. +.+||+||+.+. +.+++|.+||.. |.|. +++.+++.+|++.
T Consensus 303 ~~nlLkp~L~~g~---------------i~vIgATt~~E~~~~~~~D~AL~rRFq~-I~v~-ePs~~~~~~IL~~ 360 (758)
T PRK11034 303 AANLIKPLLSSGK---------------IRVIGSTTYQEFSNIFEKDRALARRFQK-IDIT-EPSIEETVQIING 360 (758)
T ss_pred HHHHHHHHHhCCC---------------eEEEecCChHHHHHHhhccHHHHhhCcE-EEeC-CCCHHHHHHHHHH
Confidence 5566777777764 579999998763 578999999974 5898 5689999999874
No 121
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.48 E-value=2.6e-13 Score=146.14 Aligned_cols=157 Identities=19% Similarity=0.238 Sum_probs=101.3
Q ss_pred ccCceEEecccccCC------------HHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEE--ecC-CCCcccHHHHh
Q 006254 223 AHRGVLYIDEINLLD------------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIAT--YNP-EEGVVREHLLD 287 (653)
Q Consensus 223 A~~giL~IDEi~~l~------------~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIat--tNp-~eg~l~~aLld 287 (653)
++.||+|||||+++. ..+|..||..++...+.+ +.| .+.. .++.+|++ -+. .+..|-|.|.-
T Consensus 246 e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~-k~~-~v~T-~~ILFI~~GAF~~~kp~DlIPEl~G 322 (441)
T TIGR00390 246 EQSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNT-KYG-MVKT-DHILFIAAGAFQLAKPSDLIPELQG 322 (441)
T ss_pred HcCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeee-cce-eEEC-CceeEEecCCcCCCChhhccHHHhC
Confidence 578999999999874 248999999998666544 222 1111 13444443 221 34568899999
Q ss_pred hhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHh-----
Q 006254 288 RIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALR----- 362 (653)
Q Consensus 288 Rf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~----- 362 (653)
||.++|.+. |.+.+....|+. .|. ...+++....-...--.+.+++++++.|++.+..
T Consensus 323 R~Pi~v~L~-~L~~edL~rILt-------eP~---------nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~ 385 (441)
T TIGR00390 323 RFPIRVELQ-ALTTDDFERILT-------EPK---------NSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKT 385 (441)
T ss_pred ccceEEECC-CCCHHHHHHHhc-------CCh---------hHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccc
Confidence 999999998 678888877763 111 0111111111122223478999999999999987
Q ss_pred cCCCCcchHHHHHHHHHHHHHHcCC------CCccHHHHHHHHH
Q 006254 363 GGCQGHRAELYAARVAKCLAALEGR------EKVNVDDLKKAVE 400 (653)
Q Consensus 363 ~~i~s~R~~i~llr~Ara~Aal~gr------~~Vt~eDv~~A~~ 400 (653)
.|+ |.|++..++...-.-+.++.- -.|+.+.|...+.
T Consensus 386 ~~i-GAR~LrtilE~~l~d~~fe~p~~~~~~v~I~~~~V~~~l~ 428 (441)
T TIGR00390 386 ENI-GARRLHTVLERLLEDISFEAPDLSGQNITIDADYVSKKLG 428 (441)
T ss_pred ccc-chhhHHHHHHHHHHHHHhcCCCCCCCEEEECHHHHHhHHH
Confidence 354 899988888766655555432 2466666665554
No 122
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.48 E-value=5.7e-14 Score=141.76 Aligned_cols=228 Identities=22% Similarity=0.254 Sum_probs=160.2
Q ss_pred HHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccccccccccccccccccccc
Q 006254 103 IKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIA 182 (653)
Q Consensus 103 ~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (653)
++..+...++ .+..++||.||+|.|||.|||.|..+-.. +- .-
T Consensus 196 mieqierva~-rsr~p~ll~gptgagksflarriyelk~a-------------------------rh-----------q~ 238 (531)
T COG4650 196 MIEQIERVAI-RSRAPILLNGPTGAGKSFLARRIYELKQA-------------------------RH-----------QF 238 (531)
T ss_pred HHHHHHHHHh-hccCCeEeecCCCcchhHHHHHHHHHHHH-------------------------HH-----------hc
Confidence 4444433233 24678999999999999999999876320 00 01
Q ss_pred CCCeEeCCC-----CCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHHHHHHcCceEEee
Q 006254 183 RSPFVQIPL-----GVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVER 257 (653)
Q Consensus 183 ~~~fv~l~~-----~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~l~~g~~~v~r 257 (653)
..+||++.+ ....+.|||++ ++.++|....+.|+|..|+||+||+|||..|..+-|..||.++++.. +..
T Consensus 239 sg~fvevncatlrgd~amsalfghv---kgaftga~~~r~gllrsadggmlfldeigelgadeqamllkaieekr--f~p 313 (531)
T COG4650 239 SGAFVEVNCATLRGDTAMSALFGHV---KGAFTGARESREGLLRSADGGMLFLDEIGELGADEQAMLLKAIEEKR--FYP 313 (531)
T ss_pred CCceEEEeeeeecCchHHHHHHhhh---ccccccchhhhhhhhccCCCceEehHhhhhcCccHHHHHHHHHHhhc--cCC
Confidence 456666544 34566899997 89999999999999999999999999999999999999999999988 677
Q ss_pred CCeeEEeecCcEEEEEecC------CCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhH
Q 006254 258 EGISFKHPCKPLLIATYNP------EEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDL 331 (653)
Q Consensus 258 ~G~s~~~p~~~~lIattNp------~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~ 331 (653)
-|.......+|.+|+-|-. .||.++++|+-|+++- .+..|-...++++|-.-. .|
T Consensus 314 fgsdr~v~sdfqliagtvrdlrq~vaeg~fredl~arinlw-tf~lpgl~qr~ediepnl-dy----------------- 374 (531)
T COG4650 314 FGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLW-TFTLPGLRQRQEDIEPNL-DY----------------- 374 (531)
T ss_pred CCCccccccchHHhhhhHHHHHHHHhccchHHHHHHhhhee-eeeccccccCccccCCCc-cH-----------------
Confidence 7888888899999998875 4799999999999998 778787776666663211 11
Q ss_pred HHHHHHHHHhhhcccCCCHHHHHHHHHH------HHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHH
Q 006254 332 AKTQIILAREYLKDVAIGREQLKYLVME------ALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (653)
Q Consensus 332 l~~~i~~ar~~l~~v~is~~~l~~l~~~------~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~ 399 (653)
+-...|+..-..|.+.-++....... .|.+|. |..-.- ...+|-+.....|+.+-|+.-+
T Consensus 375 --elerha~~~g~~vrfntearra~l~fa~spqa~w~gnf---relsas---vtrmatlad~grit~~~ve~ei 440 (531)
T COG4650 375 --ELERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNF---RELSAS---VTRMATLADSGRITLDVVEDEI 440 (531)
T ss_pred --HHHHHHHhhCceeeeehHHHHHHHHhccCcchhhcccH---HHHhHH---HHHHHHHhcCCceeHHHHHHHH
Confidence 11123344444566666655544443 344443 332222 2234555566678877776543
No 123
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.48 E-value=1.3e-12 Score=146.47 Aligned_cols=234 Identities=16% Similarity=0.180 Sum_probs=143.0
Q ss_pred ccCCCCCCCCceechHHHHHHHHHhcccCCCce-EEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccc
Q 006254 86 SYGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDG 164 (653)
Q Consensus 86 ~~~~~~~~f~~IvGq~~~k~aL~~~av~p~~~g-VLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~ 164 (653)
..+.+|..|++|+||+.+++.|..++-.....+ .||+||+|+|||++|+.+++.+. |........|..
T Consensus 5 ~~KyRP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~-----------c~~~~~~~pC~~ 73 (535)
T PRK08451 5 ALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALV-----------CEQGPSSTPCDT 73 (535)
T ss_pred HHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhc-----------CCCCCCCCCCcc
Confidence 346788999999999999998876554444555 48999999999999999999873 422211223333
Q ss_pred ccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHH
Q 006254 165 LDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLL 244 (653)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~L 244 (653)
|........ ..+..++.+... .. .|--++...+... ...| ..+...|++|||++.|+.+.+++|
T Consensus 74 C~~C~~~~~-------~~h~dv~eldaa--s~--~gId~IRelie~~--~~~P---~~~~~KVvIIDEad~Lt~~A~NAL 137 (535)
T PRK08451 74 CIQCQSALE-------NRHIDIIEMDAA--SN--RGIDDIRELIEQT--KYKP---SMARFKIFIIDEVHMLTKEAFNAL 137 (535)
T ss_pred cHHHHHHhh-------cCCCeEEEeccc--cc--cCHHHHHHHHHHH--hhCc---ccCCeEEEEEECcccCCHHHHHHH
Confidence 333211100 012233433321 11 1212222222111 1111 123456999999999999999999
Q ss_pred HHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhh
Q 006254 245 LNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKM 324 (653)
Q Consensus 245 l~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~ 324 (653)
|..|++-. ..+.+|.++| +...+.+.+++|+. ++.+. |.+.++..+.+. ..
T Consensus 138 LK~LEEpp-------------~~t~FIL~tt-d~~kL~~tI~SRc~-~~~F~-~Ls~~ei~~~L~---~I---------- 188 (535)
T PRK08451 138 LKTLEEPP-------------SYVKFILATT-DPLKLPATILSRTQ-HFRFK-QIPQNSIISHLK---TI---------- 188 (535)
T ss_pred HHHHhhcC-------------CceEEEEEEC-ChhhCchHHHhhce-eEEcC-CCCHHHHHHHHH---HH----------
Confidence 99999732 2345555666 55788899999975 44777 445443222221 11
Q ss_pred hhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHH
Q 006254 325 VEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (653)
Q Consensus 325 ~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~ 399 (653)
.. ...+.++++++++|+..+. . ++|..+.++..+-.++ ...||.++|.+.+
T Consensus 189 ------------l~----~EGi~i~~~Al~~Ia~~s~---G-dlR~alnlLdqai~~~----~~~It~~~V~~~l 239 (535)
T PRK08451 189 ------------LE----KEGVSYEPEALEILARSGN---G-SLRDTLTLLDQAIIYC----KNAITESKVADML 239 (535)
T ss_pred ------------HH----HcCCCCCHHHHHHHHHHcC---C-cHHHHHHHHHHHHHhc----CCCCCHHHHHHHh
Confidence 11 1247899999998877642 3 6899998886554333 3468888877653
No 124
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.48 E-value=1.6e-13 Score=166.12 Aligned_cols=140 Identities=11% Similarity=0.082 Sum_probs=97.9
Q ss_pred cCceEEecccccCCHH-----HHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHh--hhccccccc
Q 006254 224 HRGVLYIDEINLLDEG-----ISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSAD 296 (653)
Q Consensus 224 ~~giL~IDEi~~l~~~-----~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLld--Rf~~~v~l~ 296 (653)
.++||||||||.+... .++.|+..|+.... ......++|||||| .+..|+|||++ ||+..|.|.
T Consensus 1732 SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~--------~~s~~~VIVIAATN-RPD~LDPALLRPGRFDR~I~Ir 1802 (2281)
T CHL00206 1732 SPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCE--------RCSTRNILVIASTH-IPQKVDPALIAPNKLNTCIKIR 1802 (2281)
T ss_pred CCeEEEEEchhhcCCCccceehHHHHHHHhccccc--------cCCCCCEEEEEeCC-CcccCCHhHcCCCCCCeEEEeC
Confidence 4789999999998643 36778887763210 00122578999999 78899999998 999999998
Q ss_pred CCCCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHH--HHHHHHHHHhcCCCCcchHHHH
Q 006254 297 LPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQ--LKYLVMEALRGGCQGHRAELYA 374 (653)
Q Consensus 297 ~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~--l~~l~~~~~~~~i~s~R~~i~l 374 (653)
.| +..+|.+++..... ...+.+.++. ++.++. ..-+.+.+..-.+
T Consensus 1803 ~P-d~p~R~kiL~ILl~-----------------------------tkg~~L~~~~vdl~~LA~---~T~GfSGADLanL 1849 (2281)
T CHL00206 1803 RL-LIPQQRKHFFTLSY-----------------------------TRGFHLEKKMFHTNGFGS---ITMGSNARDLVAL 1849 (2281)
T ss_pred CC-CchhHHHHHHHHHh-----------------------------hcCCCCCcccccHHHHHH---hCCCCCHHHHHHH
Confidence 65 66666666542111 0112222211 333433 3334466777788
Q ss_pred HHHHHHHHHHcCCCCccHHHHHHHHHHHcCC
Q 006254 375 ARVAKCLAALEGREKVNVDDLKKAVELVILP 405 (653)
Q Consensus 375 lr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~h 405 (653)
+.-|.-+|.-.++..|+.+|++.|+.-+...
T Consensus 1850 vNEAaliAirq~ks~Id~~~I~~Al~Rq~~g 1880 (2281)
T CHL00206 1850 TNEALSISITQKKSIIDTNTIRSALHRQTWD 1880 (2281)
T ss_pred HHHHHHHHHHcCCCccCHHHHHHHHHHHHhh
Confidence 8999999999999999999999999988765
No 125
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.47 E-value=2e-13 Score=158.07 Aligned_cols=215 Identities=19% Similarity=0.246 Sum_probs=142.8
Q ss_pred CCCCCceechHHHHHHHH--Hhcc-c---------CCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCC
Q 006254 91 FFPLAAVVGQDAIKTALL--LGAI-D---------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCP 158 (653)
Q Consensus 91 ~~~f~~IvGq~~~k~aL~--~~av-~---------p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~ 158 (653)
...|.+|.|.+..+..+. +... . ....||||+||||||||+++++++..+.
T Consensus 148 ~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~----------------- 210 (644)
T PRK10733 148 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK----------------- 210 (644)
T ss_pred hCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC-----------------
Confidence 456889999998888772 1111 1 1245799999999999999999999763
Q ss_pred CcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccc---cCceEEeccccc
Q 006254 159 DEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEINL 235 (653)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~IDEi~~ 235 (653)
.+|+.++.....+.++|. +..... .++..+ .+.|||||||+.
T Consensus 211 -------------------------~~f~~is~~~~~~~~~g~---------~~~~~~-~~f~~a~~~~P~IifIDEiD~ 255 (644)
T PRK10733 211 -------------------------VPFFTISGSDFVEMFVGV---------GASRVR-DMFEQAKKAAPCIIFIDEIDA 255 (644)
T ss_pred -------------------------CCEEEEehHHhHHhhhcc---------cHHHHH-HHHHHHHhcCCcEEEehhHhh
Confidence 566666554333333442 111110 122222 357999999998
Q ss_pred CCH--------------HHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHh--hhcccccccCCC
Q 006254 236 LDE--------------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPM 299 (653)
Q Consensus 236 l~~--------------~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLld--Rf~~~v~l~~p~ 299 (653)
+.. .+++.||..|+.-. ....+++|+||| .+..++++|++ ||+..|.++. |
T Consensus 256 l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~-----------~~~~vivIaaTN-~p~~lD~Al~RpgRfdr~i~v~~-P 322 (644)
T PRK10733 256 VGRQRGAGLGGGHDEREQTLNQMLVEMDGFE-----------GNEGIIVIAATN-RPDVLDPALLRPGRFDRQVVVGL-P 322 (644)
T ss_pred hhhccCCCCCCCchHHHHHHHHHHHhhhccc-----------CCCCeeEEEecC-ChhhcCHHHhCCcccceEEEcCC-C
Confidence 732 25667776665311 123579999999 77789999997 9999999995 4
Q ss_pred CHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHH-HHHHHHHHHhcCCCCcchHHHHHHHH
Q 006254 300 TFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQ-LKYLVMEALRGGCQGHRAELYAARVA 378 (653)
Q Consensus 300 ~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~-l~~l~~~~~~~~i~s~R~~i~llr~A 378 (653)
+.++|.+|++.... .+.+.+++ +..+ +......+.+....+++-|
T Consensus 323 d~~~R~~Il~~~~~-------------------------------~~~l~~~~d~~~l---a~~t~G~sgadl~~l~~eA 368 (644)
T PRK10733 323 DVRGREQILKVHMR-------------------------------RVPLAPDIDAAII---ARGTPGFSGADLANLVNEA 368 (644)
T ss_pred CHHHHHHHHHHHhh-------------------------------cCCCCCcCCHHHH---HhhCCCCCHHHHHHHHHHH
Confidence 88889998763211 11111111 2223 3333334667777888888
Q ss_pred HHHHHHcCCCCccHHHHHHHHHHHcC
Q 006254 379 KCLAALEGREKVNVDDLKKAVELVIL 404 (653)
Q Consensus 379 ra~Aal~gr~~Vt~eDv~~A~~lvl~ 404 (653)
..+|.-.++..|+.+|+.+|...+..
T Consensus 369 a~~a~r~~~~~i~~~d~~~a~~~v~~ 394 (644)
T PRK10733 369 ALFAARGNKRVVSMVEFEKAKDKIMM 394 (644)
T ss_pred HHHHHHcCCCcccHHHHHHHHHHHhc
Confidence 88888899999999999999987654
No 126
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.47 E-value=1e-12 Score=142.35 Aligned_cols=247 Identities=18% Similarity=0.165 Sum_probs=146.5
Q ss_pred CCCCCceechHHHHHHHHHhc---c-cCCCceEEEECCCCCHHHHHHHHHHhhCCCCe-----eeccccccCCCCCC-Cc
Q 006254 91 FFPLAAVVGQDAIKTALLLGA---I-DREIGGIAISGRRGTAKTVMARGLHAILPPIE-----VVVGSIANADPTCP-DE 160 (653)
Q Consensus 91 ~~~f~~IvGq~~~k~aL~~~a---v-~p~~~gVLL~GppGTGKT~lArala~~l~~~~-----~v~~~~~nc~p~~~-~~ 160 (653)
.|..+.++|++..+..|...+ + ....+.++|+||||||||++++.+.+.+.... .+..+++||..... ..
T Consensus 11 ~~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~ 90 (365)
T TIGR02928 11 DYVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQ 90 (365)
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHH
Confidence 445578999998887773322 2 22346799999999999999999998764211 04456677743221 11
Q ss_pred ccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccc-cccCceEEecccccCC--
Q 006254 161 WEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLA-EAHRGVLYIDEINLLD-- 237 (653)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~-~A~~giL~IDEi~~l~-- 237 (653)
+...+...+.. .+ ...+ ..+.+..+++.. +. ..+. .....||+|||++.+.
T Consensus 91 ~~~~i~~~l~~--~~------~~~~----~~~~~~~~~~~~------l~--------~~l~~~~~~~vlvIDE~d~L~~~ 144 (365)
T TIGR02928 91 VLVELANQLRG--SG------EEVP----TTGLSTSEVFRR------LY--------KELNERGDSLIIVLDEIDYLVGD 144 (365)
T ss_pred HHHHHHHHHhh--cC------CCCC----CCCCCHHHHHHH------HH--------HHHHhcCCeEEEEECchhhhccC
Confidence 11111000000 00 0000 000111111110 00 0111 1223589999999994
Q ss_pred -HHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCC--CcccHHHHhhhc-ccccccCCCCHhhHHHHHHHHHH
Q 006254 238 -EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE--GVVREHLLDRIA-INLSADLPMTFEDRVAAVGIATQ 313 (653)
Q Consensus 238 -~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e--g~l~~aLldRf~-~~v~l~~p~~~~~r~~I~~~~~~ 313 (653)
.+++..|+...+.... ...++.+|+++|... ..+.+.+.+||. ..|.+. |++.++..+|+.....
T Consensus 145 ~~~~L~~l~~~~~~~~~----------~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~-p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 145 DDDLLYQLSRARSNGDL----------DNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFP-PYDAEELRDILENRAE 213 (365)
T ss_pred CcHHHHhHhccccccCC----------CCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeC-CCCHHHHHHHHHHHHH
Confidence 2333344333111110 013577888888432 357788889996 345666 7888888888764321
Q ss_pred HHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHH
Q 006254 314 FQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVD 393 (653)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~e 393 (653)
..+....++++++++++..+...+. ..|..+.+++.|..+|..+++..|+.+
T Consensus 214 ---------------------------~~~~~~~~~~~~l~~i~~~~~~~~G-d~R~al~~l~~a~~~a~~~~~~~it~~ 265 (365)
T TIGR02928 214 ---------------------------KAFYDGVLDDGVIPLCAALAAQEHG-DARKAIDLLRVAGEIAEREGAERVTED 265 (365)
T ss_pred ---------------------------hhccCCCCChhHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 0112235888999999888776544 489999999999999999999999999
Q ss_pred HHHHHHHHH
Q 006254 394 DLKKAVELV 402 (653)
Q Consensus 394 Dv~~A~~lv 402 (653)
||..|...+
T Consensus 266 ~v~~a~~~~ 274 (365)
T TIGR02928 266 HVEKAQEKI 274 (365)
T ss_pred HHHHHHHHH
Confidence 999998876
No 127
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.47 E-value=3.7e-13 Score=145.04 Aligned_cols=156 Identities=18% Similarity=0.216 Sum_probs=100.7
Q ss_pred ccCceEEecccccCC------------HHHHHHHHHHHHcCceEEeeCCeeEEeec-CcEEEEE--ecC-CCCcccHHHH
Q 006254 223 AHRGVLYIDEINLLD------------EGISNLLLNVLTEGVNIVEREGISFKHPC-KPLLIAT--YNP-EEGVVREHLL 286 (653)
Q Consensus 223 A~~giL~IDEi~~l~------------~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~-~~~lIat--tNp-~eg~l~~aLl 286 (653)
++.||+|||||+++. ..+|..||..++.-.+.+. .| .+.. ++.+|++ -+. .+..|-|.|.
T Consensus 248 e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k-~~---~i~T~~ILFI~~GAF~~~kp~DlIPEl~ 323 (443)
T PRK05201 248 EQNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTK-YG---MVKTDHILFIASGAFHVSKPSDLIPELQ 323 (443)
T ss_pred HcCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeec-ce---eEECCceeEEecCCcCCCChhhccHHHh
Confidence 389999999999874 3589999999986655442 22 1222 3344443 221 3456889999
Q ss_pred hhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhc---
Q 006254 287 DRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRG--- 363 (653)
Q Consensus 287 dRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~--- 363 (653)
-||.++|.+. |.+.+....|+. .|. ...+++....-...--.+.+++++++.|++.+...
T Consensus 324 GR~Pi~v~L~-~L~~~dL~~ILt-------eP~---------nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~ 386 (443)
T PRK05201 324 GRFPIRVELD-ALTEEDFVRILT-------EPK---------ASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEK 386 (443)
T ss_pred CccceEEECC-CCCHHHHHHHhc-------CCh---------hHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhccc
Confidence 9999999998 678888877764 111 11112221212222234689999999999999884
Q ss_pred --CCCCcchHHHHHHHHHHHHHHcCC------CCccHHHHHHHHH
Q 006254 364 --GCQGHRAELYAARVAKCLAALEGR------EKVNVDDLKKAVE 400 (653)
Q Consensus 364 --~i~s~R~~i~llr~Ara~Aal~gr------~~Vt~eDv~~A~~ 400 (653)
|+ |.|++..++.-.-.-+.++.- -.|+.+.|...+.
T Consensus 387 ~~~i-GAR~LrtI~E~~L~d~~Fe~p~~~~~~v~I~~~~V~~~l~ 430 (443)
T PRK05201 387 TENI-GARRLHTVMEKLLEDISFEAPDMSGETVTIDAAYVDEKLG 430 (443)
T ss_pred cccc-chhhHHHHHHHHHHHHhccCCCCCCCEEEECHHHHHHHHH
Confidence 44 899999888766555554432 2466666655543
No 128
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.47 E-value=1.9e-12 Score=138.54 Aligned_cols=231 Identities=16% Similarity=0.122 Sum_probs=134.8
Q ss_pred ccCCCCCCCCceechHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCe-eeccccccCCCCCCCccccc
Q 006254 86 SYGRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIE-VVVGSIANADPTCPDEWEDG 164 (653)
Q Consensus 86 ~~~~~~~~f~~IvGq~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~-~v~~~~~nc~p~~~~~~~~~ 164 (653)
..+.+|..|++|+|++.+++.|...+-.+...++||+||||||||++|+++++.+.... ......+||.-.. +.+...
T Consensus 6 ~~ky~P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~-~~~~~~ 84 (337)
T PRK12402 6 TEKYRPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFF-DQGKKY 84 (337)
T ss_pred HHhhCCCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhh-hcchhh
Confidence 34567889999999999999997666655556899999999999999999999874211 0011222221000 000000
Q ss_pred ccccccccccccccccccCCCeEeCCCCCcccceeee--------cchhhhhccCCccccccccc-cccCceEEeccccc
Q 006254 165 LDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGS--------VDVEESVKTGTTVFQPGLLA-EAHRGVLYIDEINL 235 (653)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~--------~d~~~~~~~g~~~~~~Gll~-~A~~giL~IDEi~~ 235 (653)
+. ....|. .+++. .+.-+.+-.. ..+... .+...+|+|||++.
T Consensus 85 ~~---------------~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~vlilDe~~~ 136 (337)
T PRK12402 85 LV---------------EDPRFA---------HFLGTDKRIRSSKIDNFKHVLKE----YASYRPLSADYKTILLDNAEA 136 (337)
T ss_pred hh---------------cCcchh---------hhhhhhhhhccchHHHHHHHHHH----HHhcCCCCCCCcEEEEeCccc
Confidence 00 000000 00010 0000000000 000110 13457999999999
Q ss_pred CCHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHH
Q 006254 236 LDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQ 315 (653)
Q Consensus 236 l~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~ 315 (653)
++...++.|+..++... ....+|.++| ....+.+.|.+|+.. +.+. |++.++..+++...
T Consensus 137 l~~~~~~~L~~~le~~~-------------~~~~~Il~~~-~~~~~~~~L~sr~~~-v~~~-~~~~~~~~~~l~~~---- 196 (337)
T PRK12402 137 LREDAQQALRRIMEQYS-------------RTCRFIIATR-QPSKLIPPIRSRCLP-LFFR-APTDDELVDVLESI---- 196 (337)
T ss_pred CCHHHHHHHHHHHHhcc-------------CCCeEEEEeC-ChhhCchhhcCCceE-EEec-CCCHHHHHHHHHHH----
Confidence 99999999999988542 1234555555 334566788899754 4666 55666555554321
Q ss_pred hhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHH
Q 006254 316 ERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDL 395 (653)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv 395 (653)
. ....+.+++++++.|+.++ .+ +.|..+..+.. .+ .+...||.+||
T Consensus 197 ---------------------~----~~~~~~~~~~al~~l~~~~-~g---dlr~l~~~l~~---~~--~~~~~It~~~v 242 (337)
T PRK12402 197 ---------------------A----EAEGVDYDDDGLELIAYYA-GG---DLRKAILTLQT---AA--LAAGEITMEAA 242 (337)
T ss_pred ---------------------H----HHcCCCCCHHHHHHHHHHc-CC---CHHHHHHHHHH---HH--HcCCCCCHHHH
Confidence 0 0124679999999999876 22 47777766543 22 23347999999
Q ss_pred HHHH
Q 006254 396 KKAV 399 (653)
Q Consensus 396 ~~A~ 399 (653)
.+++
T Consensus 243 ~~~~ 246 (337)
T PRK12402 243 YEAL 246 (337)
T ss_pred HHHh
Confidence 8865
No 129
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=8e-14 Score=150.28 Aligned_cols=161 Identities=20% Similarity=0.283 Sum_probs=119.0
Q ss_pred CCCCCCCCceechHHHHHHHHHhcccCCC------------ceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCC
Q 006254 88 GRQFFPLAAVVGQDAIKTALLLGAIDREI------------GGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADP 155 (653)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~~~av~p~~------------~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p 155 (653)
..+.+.|++|.|.+.+|+.+...++.|.. .++||+||||||||+|+++||.++
T Consensus 146 ~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~--------------- 210 (428)
T KOG0740|consen 146 TLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATES--------------- 210 (428)
T ss_pred cCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhh---------------
Confidence 44578899999999999999777777644 459999999999999999999976
Q ss_pred CCCCcccccccccccccccccccccccCCCeEeCCCCCcccceeeec-chhhhhccCCccccccccccccCceEEecccc
Q 006254 156 TCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSV-DVEESVKTGTTVFQPGLLAEAHRGVLYIDEIN 234 (653)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~-d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~ 234 (653)
...|+.++.+.....|+|.. -+-++++.-++.. ..+|+|||||+
T Consensus 211 ---------------------------~atff~iSassLtsK~~Ge~eK~vralf~vAr~~--------qPsvifidEid 255 (428)
T KOG0740|consen 211 ---------------------------GATFFNISASSLTSKYVGESEKLVRALFKVARSL--------QPSVIFIDEID 255 (428)
T ss_pred ---------------------------cceEeeccHHHhhhhccChHHHHHHHHHHHHHhc--------CCeEEEechhH
Confidence 57899999999999999963 1222333223223 34799999998
Q ss_pred cC-----------CHHHH-HHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHh
Q 006254 235 LL-----------DEGIS-NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFE 302 (653)
Q Consensus 235 ~l-----------~~~~~-~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~ 302 (653)
.+ +..+. ..|++. +|.......++++||||| .++++++++++||..+++|+.| +.+
T Consensus 256 slls~Rs~~e~e~srr~ktefLiq~----------~~~~s~~~drvlvigaTN-~P~e~Dea~~Rrf~kr~yiplP-d~e 323 (428)
T KOG0740|consen 256 SLLSKRSDNEHESSRRLKTEFLLQF----------DGKNSAPDDRVLVIGATN-RPWELDEAARRRFVKRLYIPLP-DYE 323 (428)
T ss_pred HHHhhcCCcccccchhhhhHHHhhh----------ccccCCCCCeEEEEecCC-CchHHHHHHHHHhhceeeecCC-CHH
Confidence 65 11121 222221 233223334789999999 9999999999999999999854 778
Q ss_pred hHHHHHHH
Q 006254 303 DRVAAVGI 310 (653)
Q Consensus 303 ~r~~I~~~ 310 (653)
.|..++..
T Consensus 324 tr~~~~~~ 331 (428)
T KOG0740|consen 324 TRSLLWKQ 331 (428)
T ss_pred HHHHHHHH
Confidence 78777653
No 130
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46 E-value=1.2e-12 Score=149.21 Aligned_cols=234 Identities=20% Similarity=0.167 Sum_probs=146.4
Q ss_pred cccCCCCCCCCceechHHHHHHHHHhcccCC-CceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCC-------
Q 006254 85 DSYGRQFFPLAAVVGQDAIKTALLLGAIDRE-IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT------- 156 (653)
Q Consensus 85 ~~~~~~~~~f~~IvGq~~~k~aL~~~av~p~-~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~------- 156 (653)
...+++|..|++|+||+.+++.|.-+..... .+.+||+||+|+|||++|+.+++.+. |...
T Consensus 14 la~KyRP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~-----------c~~~~~~~~~~ 82 (598)
T PRK09111 14 LARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALN-----------YEGPDGDGGPT 82 (598)
T ss_pred HHhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhC-----------cCCccccCCCc
Confidence 3445788899999999999999965444333 34599999999999999999999874 3211
Q ss_pred -CCCcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEeccccc
Q 006254 157 -CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINL 235 (653)
Q Consensus 157 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~ 235 (653)
++-++|..|...... ...-|+.+.... -.|.-|+..-+ +. ....| ..+...|++|||++.
T Consensus 83 ~~~cg~c~~C~~i~~g----------~h~Dv~e~~a~s----~~gvd~IReIi-e~-~~~~P---~~a~~KVvIIDEad~ 143 (598)
T PRK09111 83 IDLCGVGEHCQAIMEG----------RHVDVLEMDAAS----HTGVDDIREII-ES-VRYRP---VSARYKVYIIDEVHM 143 (598)
T ss_pred cccCcccHHHHHHhcC----------CCCceEEecccc----cCCHHHHHHHH-HH-HHhch---hcCCcEEEEEEChHh
Confidence 122345555432210 122344443221 12222222111 10 01111 124467999999999
Q ss_pred CCHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHH
Q 006254 236 LDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQ 315 (653)
Q Consensus 236 l~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~ 315 (653)
|+.+.++.||..|++-. ..+.||.+++ +...+.+.+++|+..+ .+. +++.++....+..
T Consensus 144 Ls~~a~naLLKtLEePp-------------~~~~fIl~tt-e~~kll~tI~SRcq~~-~f~-~l~~~el~~~L~~----- 202 (598)
T PRK09111 144 LSTAAFNALLKTLEEPP-------------PHVKFIFATT-EIRKVPVTVLSRCQRF-DLR-RIEADVLAAHLSR----- 202 (598)
T ss_pred CCHHHHHHHHHHHHhCC-------------CCeEEEEEeC-ChhhhhHHHHhheeEE-Eec-CCCHHHHHHHHHH-----
Confidence 99999999999999742 3455666665 4445778899998654 776 3455443333221
Q ss_pred hhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHH
Q 006254 316 ERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDL 395 (653)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv 395 (653)
+. ....+.++++++++|+..+. . +.|..+.++..+..+ |...|+.++|
T Consensus 203 --------------------i~----~kegi~i~~eAl~lIa~~a~---G-dlr~al~~Ldkli~~----g~g~It~e~V 250 (598)
T PRK09111 203 --------------------IA----AKEGVEVEDEALALIARAAE---G-SVRDGLSLLDQAIAH----GAGEVTAEAV 250 (598)
T ss_pred --------------------HH----HHcCCCCCHHHHHHHHHHcC---C-CHHHHHHHHHHHHhh----cCCCcCHHHH
Confidence 11 12257899999999987652 2 688888887544322 4457999999
Q ss_pred HHHHHH
Q 006254 396 KKAVEL 401 (653)
Q Consensus 396 ~~A~~l 401 (653)
...+.+
T Consensus 251 ~~llg~ 256 (598)
T PRK09111 251 RDMLGL 256 (598)
T ss_pred HHHhCC
Confidence 987654
No 131
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46 E-value=1.3e-12 Score=147.31 Aligned_cols=232 Identities=16% Similarity=0.177 Sum_probs=142.3
Q ss_pred cCCCCCCCCceechHHHHHHHHHhcccCC-CceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccc
Q 006254 87 YGRQFFPLAAVVGQDAIKTALLLGAIDRE-IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL 165 (653)
Q Consensus 87 ~~~~~~~f~~IvGq~~~k~aL~~~av~p~-~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~ 165 (653)
.+.+|..|++|+||+.+++.|.-+..... .+.+||+||+|+|||++|+.++..+. |........|..|
T Consensus 8 ~KyRP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~-----------C~~~~~~~~Cg~C 76 (605)
T PRK05896 8 RKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAIN-----------CLNPKDGDCCNSC 76 (605)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc-----------CCCCCCCCCCccc
Confidence 35788999999999999998866544333 34599999999999999999999873 4221112234444
Q ss_pred cccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHH
Q 006254 166 DEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLL 245 (653)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll 245 (653)
......... ....++.+.... ..|--++.. +.... ...| ..++..|++|||++.|+...++.|+
T Consensus 77 ~sCr~i~~~-------~h~DiieIdaas----~igVd~IRe-Ii~~~-~~~P---~~~~~KVIIIDEad~Lt~~A~NaLL 140 (605)
T PRK05896 77 SVCESINTN-------QSVDIVELDAAS----NNGVDEIRN-IIDNI-NYLP---TTFKYKVYIIDEAHMLSTSAWNALL 140 (605)
T ss_pred HHHHHHHcC-------CCCceEEecccc----ccCHHHHHH-HHHHH-Hhch---hhCCcEEEEEechHhCCHHHHHHHH
Confidence 331111000 122344443211 112111111 11000 0111 1235679999999999999999999
Q ss_pred HHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhh
Q 006254 246 NVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMV 325 (653)
Q Consensus 246 ~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~ 325 (653)
..|++.. ...++|.+++ ....+.+.+++|+..+ .+. +++.++....+..+
T Consensus 141 KtLEEPp-------------~~tvfIL~Tt-~~~KLl~TI~SRcq~i-eF~-~Ls~~eL~~~L~~i-------------- 190 (605)
T PRK05896 141 KTLEEPP-------------KHVVFIFATT-EFQKIPLTIISRCQRY-NFK-KLNNSELQELLKSI-------------- 190 (605)
T ss_pred HHHHhCC-------------CcEEEEEECC-ChHhhhHHHHhhhhhc-ccC-CCCHHHHHHHHHHH--------------
Confidence 9999743 2345666665 4567888999998754 776 45555444333211
Q ss_pred hhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHH
Q 006254 326 EEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKA 398 (653)
Q Consensus 326 ~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A 398 (653)
.. ...+.+++++++.++.++. . ++|.++.++.. ++.+.|. .|+.++|.++
T Consensus 191 -----------l~----kegi~Is~eal~~La~lS~---G-dlR~AlnlLek---L~~y~~~-~It~e~V~el 240 (605)
T PRK05896 191 -----------AK----KEKIKIEDNAIDKIADLAD---G-SLRDGLSILDQ---LSTFKNS-EIDIEDINKT 240 (605)
T ss_pred -----------HH----HcCCCCCHHHHHHHHHHcC---C-cHHHHHHHHHH---HHhhcCC-CCCHHHHHHH
Confidence 00 1246799999988877753 2 57888887765 3444453 3888887774
No 132
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=1.2e-12 Score=146.87 Aligned_cols=233 Identities=18% Similarity=0.174 Sum_probs=144.5
Q ss_pred cCCCCCCCCceechHHHHHHHHHhcccCCCceE-EEECCCCCHHHHHHHHHHhhCCCCeeeccccccCC-CCCCCccccc
Q 006254 87 YGRQFFPLAAVVGQDAIKTALLLGAIDREIGGI-AISGRRGTAKTVMARGLHAILPPIEVVVGSIANAD-PTCPDEWEDG 164 (653)
Q Consensus 87 ~~~~~~~f~~IvGq~~~k~aL~~~av~p~~~gV-LL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~-p~~~~~~~~~ 164 (653)
.+.+|..|++|+||++++..|...+......+. ||+|||||||||+|+++++.+. |. |. ...|..
T Consensus 6 ~KyRP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~-----------c~~~~--~~~cg~ 72 (504)
T PRK14963 6 QRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVN-----------CSGED--PKPCGE 72 (504)
T ss_pred HhhCCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHh-----------ccCCC--CCCCCc
Confidence 357889999999999999988665554455565 9999999999999999999873 31 21 113333
Q ss_pred ccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHH
Q 006254 165 LDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLL 244 (653)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~L 244 (653)
|......... ....++.+.... . .| +|.-+.+..-. ...| ..+...||+|||++.++...++.|
T Consensus 73 C~sc~~i~~~-------~h~dv~el~~~~--~--~~-vd~iR~l~~~~-~~~p---~~~~~kVVIIDEad~ls~~a~naL 136 (504)
T PRK14963 73 CESCLAVRRG-------AHPDVLEIDAAS--N--NS-VEDVRDLREKV-LLAP---LRGGRKVYILDEAHMMSKSAFNAL 136 (504)
T ss_pred ChhhHHHhcC-------CCCceEEecccc--c--CC-HHHHHHHHHHH-hhcc---ccCCCeEEEEECccccCHHHHHHH
Confidence 3221111000 122344444321 1 11 21112221100 0111 123456999999999999999999
Q ss_pred HHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhh
Q 006254 245 LNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKM 324 (653)
Q Consensus 245 l~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~ 324 (653)
+..+++.. ..+++|.++| ....+.+.+.+|+..+ .+. |++.++..+.+....
T Consensus 137 Lk~LEep~-------------~~t~~Il~t~-~~~kl~~~I~SRc~~~-~f~-~ls~~el~~~L~~i~------------ 188 (504)
T PRK14963 137 LKTLEEPP-------------EHVIFILATT-EPEKMPPTILSRTQHF-RFR-RLTEEEIAGKLRRLL------------ 188 (504)
T ss_pred HHHHHhCC-------------CCEEEEEEcC-ChhhCChHHhcceEEE-Eec-CCCHHHHHHHHHHHH------------
Confidence 99998742 2345666666 4567888999998754 777 455554443333110
Q ss_pred hhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHH
Q 006254 325 VEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELV 402 (653)
Q Consensus 325 ~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~lv 402 (653)
....+.++++++++|++.+. . ..|..++++..+.. . ...||.++|.+++...
T Consensus 189 -----------------~~egi~i~~~Al~~ia~~s~---G-dlR~aln~Lekl~~---~--~~~It~~~V~~~l~~~ 240 (504)
T PRK14963 189 -----------------EAEGREAEPEALQLVARLAD---G-AMRDAESLLERLLA---L--GTPVTRKQVEEALGLP 240 (504)
T ss_pred -----------------HHcCCCCCHHHHHHHHHHcC---C-CHHHHHHHHHHHHh---c--CCCCCHHHHHHHHCCC
Confidence 01257789999999987763 2 58888888765432 2 2379999988875443
No 133
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=1.4e-12 Score=149.13 Aligned_cols=232 Identities=19% Similarity=0.202 Sum_probs=141.3
Q ss_pred cCCCCCCCCceechHHHHHHHHHhcccCCCce-EEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccc
Q 006254 87 YGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL 165 (653)
Q Consensus 87 ~~~~~~~f~~IvGq~~~k~aL~~~av~p~~~g-VLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~ 165 (653)
.+.+|..|++|+||+++++.|.-++-.....+ +||+||+|+|||++|+.+++.+ ||........|..|
T Consensus 8 ~k~RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l-----------~c~~~~~~~~c~~c 76 (576)
T PRK14965 8 RKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKAL-----------NCEQGLTAEPCNVC 76 (576)
T ss_pred HHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhh-----------cCCCCCCCCCCCcc
Confidence 35678999999999999999966554444444 6999999999999999999987 35322222234444
Q ss_pred cccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHH
Q 006254 166 DEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLL 245 (653)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll 245 (653)
.......... ...|+.+.... -.|.-|+. .+.... ...| ..+...|++|||++.|+.+.++.|+
T Consensus 77 ~~c~~i~~g~-------~~d~~eid~~s----~~~v~~ir-~l~~~~-~~~p---~~~~~KVvIIdev~~Lt~~a~naLL 140 (576)
T PRK14965 77 PPCVEITEGR-------SVDVFEIDGAS----NTGVDDIR-ELRENV-KYLP---SRSRYKIFIIDEVHMLSTNAFNALL 140 (576)
T ss_pred HHHHHHhcCC-------CCCeeeeeccC----ccCHHHHH-HHHHHH-Hhcc---ccCCceEEEEEChhhCCHHHHHHHH
Confidence 3322111111 22234332211 01111111 111100 1112 1245679999999999999999999
Q ss_pred HHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhh
Q 006254 246 NVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMV 325 (653)
Q Consensus 246 ~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~ 325 (653)
..|++- |..++||.+|| +...+.+.+++|+..+ .+. +.+.++....+. .
T Consensus 141 k~LEep-------------p~~~~fIl~t~-~~~kl~~tI~SRc~~~-~f~-~l~~~~i~~~L~---~------------ 189 (576)
T PRK14965 141 KTLEEP-------------PPHVKFIFATT-EPHKVPITILSRCQRF-DFR-RIPLQKIVDRLR---Y------------ 189 (576)
T ss_pred HHHHcC-------------CCCeEEEEEeC-ChhhhhHHHHHhhhhh-hcC-CCCHHHHHHHHH---H------------
Confidence 999974 23456666666 5577888999998655 776 444443222221 1
Q ss_pred hhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHH
Q 006254 326 EEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKA 398 (653)
Q Consensus 326 ~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A 398 (653)
|.. ..++.++++++.+|+..+. . ++|..+.++.-+. .+.| ..|+.+||...
T Consensus 190 ----------i~~----~egi~i~~~al~~la~~a~---G-~lr~al~~Ldqli---ay~g-~~It~edV~~l 240 (576)
T PRK14965 190 ----------IAD----QEGISISDAALALVARKGD---G-SMRDSLSTLDQVL---AFCG-DAVGDDDVAEL 240 (576)
T ss_pred ----------HHH----HhCCCCCHHHHHHHHHHcC---C-CHHHHHHHHHHHH---Hhcc-CCCCHHHHHHH
Confidence 111 1257899999988876643 2 6888888875332 2233 35888887665
No 134
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.46 E-value=8.7e-13 Score=133.11 Aligned_cols=206 Identities=13% Similarity=0.127 Sum_probs=128.0
Q ss_pred CCCCCceec--hHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccccccc
Q 006254 91 FFPLAAVVG--QDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (653)
Q Consensus 91 ~~~f~~IvG--q~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~ 168 (653)
+++|+++++ .+.++.++...+......+|+|+||+|||||++|++++..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~-------------------------- 64 (226)
T TIGR03420 11 DPTFDNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEE-------------------------- 64 (226)
T ss_pred chhhcCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHh--------------------------
Confidence 566777773 5567777744333445678999999999999999999987631
Q ss_pred ccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHH--HHHHHH
Q 006254 169 AEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGI--SNLLLN 246 (653)
Q Consensus 169 ~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~--~~~Ll~ 246 (653)
...+++.+++....+.... +. ..+ ...++|||||++.++... ++.|..
T Consensus 65 -------------~~~~~~~i~~~~~~~~~~~-------~~--------~~~--~~~~lLvIDdi~~l~~~~~~~~~L~~ 114 (226)
T TIGR03420 65 -------------RGKSAIYLPLAELAQADPE-------VL--------EGL--EQADLVCLDDVEAIAGQPEWQEALFH 114 (226)
T ss_pred -------------cCCcEEEEeHHHHHHhHHH-------HH--------hhc--ccCCEEEEeChhhhcCChHHHHHHHH
Confidence 1223333332221111100 00 001 123699999999998744 788888
Q ss_pred HHHcCceEEeeCCeeEEeecCcEEEEEecCCCCc--cc-HHHHhhhc--ccccccCCCCHhhHHHHHHHHHHHHhhhhHH
Q 006254 247 VLTEGVNIVEREGISFKHPCKPLLIATYNPEEGV--VR-EHLLDRIA--INLSADLPMTFEDRVAAVGIATQFQERSNEV 321 (653)
Q Consensus 247 ~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~--l~-~aLldRf~--~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~ 321 (653)
+++.... . +..+|.|+|..... +. +.|.+||. ..|.++ |++.+++..++...
T Consensus 115 ~l~~~~~----~--------~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~-~l~~~e~~~~l~~~---------- 171 (226)
T TIGR03420 115 LYNRVRE----A--------GGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLP-PLSDEEKIAALQSR---------- 171 (226)
T ss_pred HHHHHHH----c--------CCeEEEECCCChHHCCcccHHHHHHHhcCeeEecC-CCCHHHHHHHHHHH----------
Confidence 7764220 0 12355566644333 33 78999985 566676 44555555554311
Q ss_pred hhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHH
Q 006254 322 FKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (653)
Q Consensus 322 ~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~ 399 (653)
. . ...+.++++++++|++. |.+| .|....+++.+...+...| ..|+.+.+++++
T Consensus 172 ---------------~--~--~~~~~~~~~~l~~L~~~-~~gn---~r~L~~~l~~~~~~~~~~~-~~i~~~~~~~~~ 225 (226)
T TIGR03420 172 ---------------A--A--RRGLQLPDEVADYLLRH-GSRD---MGSLMALLDALDRASLAAK-RKITIPFVKEVL 225 (226)
T ss_pred ---------------H--H--HcCCCCCHHHHHHHHHh-ccCC---HHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHh
Confidence 0 0 12467999999999994 7765 4777777777776565555 479999998875
No 135
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.46 E-value=2.6e-12 Score=130.20 Aligned_cols=206 Identities=14% Similarity=0.115 Sum_probs=128.2
Q ss_pred CCCCCCCceech--HHHHHHHHHhcc-cCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccc
Q 006254 89 RQFFPLAAVVGQ--DAIKTALLLGAI-DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL 165 (653)
Q Consensus 89 ~~~~~f~~IvGq--~~~k~aL~~~av-~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~ 165 (653)
.++++|+++++. +.+...+....- .....+|+|+||+|||||++|++++..+..
T Consensus 12 ~~~~~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~----------------------- 68 (227)
T PRK08903 12 PPPPTFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASY----------------------- 68 (227)
T ss_pred CChhhhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHh-----------------------
Confidence 346788887733 344444422211 234578999999999999999999987521
Q ss_pred cccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHH
Q 006254 166 DEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLL 245 (653)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll 245 (653)
.+.+++.+........ + . ...+..+|||||++.++...+..|+
T Consensus 69 ----------------~~~~~~~i~~~~~~~~-~------------------~--~~~~~~~liiDdi~~l~~~~~~~L~ 111 (227)
T PRK08903 69 ----------------GGRNARYLDAASPLLA-F------------------D--FDPEAELYAVDDVERLDDAQQIALF 111 (227)
T ss_pred ----------------CCCcEEEEehHHhHHH-H------------------h--hcccCCEEEEeChhhcCchHHHHHH
Confidence 1223333332221100 0 0 0123579999999999999999999
Q ss_pred HHHHcCceEEeeCCeeEEeecCcEEEEEecC--CCCcccHHHHhhh--cccccccCCCCHhhHHHHHHHHHHHHhhhhHH
Q 006254 246 NVLTEGVNIVEREGISFKHPCKPLLIATYNP--EEGVVREHLLDRI--AINLSADLPMTFEDRVAAVGIATQFQERSNEV 321 (653)
Q Consensus 246 ~~l~~g~~~v~r~G~s~~~p~~~~lIattNp--~eg~l~~aLldRf--~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~ 321 (653)
.+++.... .| ..++|.+++. ....+.++|++|| +..|.++ |++.+.+..++..
T Consensus 112 ~~~~~~~~----~~-------~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~-pl~~~~~~~~l~~----------- 168 (227)
T PRK08903 112 NLFNRVRA----HG-------QGALLVAGPAAPLALPLREDLRTRLGWGLVYELK-PLSDADKIAALKA----------- 168 (227)
T ss_pred HHHHHHHH----cC-------CcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEec-CCCHHHHHHHHHH-----------
Confidence 98864320 01 2224444442 2345679999999 4676776 4444433333220
Q ss_pred hhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHHH
Q 006254 322 FKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (653)
Q Consensus 322 ~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~ 400 (653)
+. ....+.++++++++|+. .|.+++ |..+.+++.-..+|...+ ..||...+++++.
T Consensus 169 --------------~~----~~~~v~l~~~al~~L~~-~~~gn~---~~l~~~l~~l~~~~~~~~-~~i~~~~~~~~l~ 224 (227)
T PRK08903 169 --------------AA----AERGLQLADEVPDYLLT-HFRRDM---PSLMALLDALDRYSLEQK-RPVTLPLLREMLA 224 (227)
T ss_pred --------------HH----HHcCCCCCHHHHHHHHH-hccCCH---HHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHh
Confidence 00 01248899999999998 677654 777777766655665555 5999999999874
No 136
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.45 E-value=6.7e-13 Score=156.13 Aligned_cols=214 Identities=23% Similarity=0.236 Sum_probs=132.5
Q ss_pred CceechHHHHHHHHHhcc-------cC--CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccc
Q 006254 95 AAVVGQDAIKTALLLGAI-------DR--EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL 165 (653)
Q Consensus 95 ~~IvGq~~~k~aL~~~av-------~p--~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~ 165 (653)
..|+||+.+++.+..+.. +| -.+.+||.||+|||||++|++|+..+.. ....++|..
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~----~~~~~d~se---------- 519 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGV----HLERFDMSE---------- 519 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcC----CeEEEeCch----------
Confidence 468999999888743222 22 1345899999999999999999998841 001111100
Q ss_pred cccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccc----cccCceEEecccccCCHHHH
Q 006254 166 DEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLA----EAHRGVLYIDEINLLDEGIS 241 (653)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~----~A~~giL~IDEi~~l~~~~~ 241 (653)
| ....+..+++|+..-.. |. ..-|.+. ....+|||||||+++.++++
T Consensus 520 --------------------~---~~~~~~~~lig~~~gyv----g~--~~~~~l~~~~~~~p~~VvllDEieka~~~~~ 570 (731)
T TIGR02639 520 --------------------Y---MEKHTVSRLIGAPPGYV----GF--EQGGLLTEAVRKHPHCVLLLDEIEKAHPDIY 570 (731)
T ss_pred --------------------h---hhcccHHHHhcCCCCCc----cc--chhhHHHHHHHhCCCeEEEEechhhcCHHHH
Confidence 0 00011223333210000 10 0112222 23458999999999999999
Q ss_pred HHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCC------------------------CcccHHHHhhhcccccccC
Q 006254 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE------------------------GVVREHLLDRIAINLSADL 297 (653)
Q Consensus 242 ~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e------------------------g~l~~aLldRf~~~v~l~~ 297 (653)
+.|+++|++|.++- ..|..+.+. +.++|+|+|... ..++|.|++||+.+|.+.
T Consensus 571 ~~Ll~~ld~g~~~d-~~g~~vd~~-~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~- 647 (731)
T TIGR02639 571 NILLQVMDYATLTD-NNGRKADFR-NVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFN- 647 (731)
T ss_pred HHHHHhhccCeeec-CCCcccCCC-CCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcC-
Confidence 99999999998642 223333332 578999998621 127889999999887777
Q ss_pred CCCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 006254 298 PMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAA 375 (653)
Q Consensus 298 p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~ll 375 (653)
|.+.++..+|+++.+.- +..++ ...--.+.++++++++|++.+..... |.|..-.++
T Consensus 648 pLs~e~l~~Iv~~~L~~-----------------l~~~l---~~~~~~l~i~~~a~~~La~~~~~~~~-GaR~l~r~i 704 (731)
T TIGR02639 648 PLSEEVLEKIVQKFVDE-----------------LSKQL---NEKNIKLELTDDAKKYLAEKGYDEEF-GARPLARVI 704 (731)
T ss_pred CCCHHHHHHHHHHHHHH-----------------HHHHH---HhCCCeEEeCHHHHHHHHHhCCCccc-CchHHHHHH
Confidence 88999888888754321 11111 11112478999999999987544433 566655544
No 137
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.45 E-value=6.5e-13 Score=157.06 Aligned_cols=208 Identities=20% Similarity=0.266 Sum_probs=122.1
Q ss_pred ceechHHHHHHHHHh-cc---cC--CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccc
Q 006254 96 AVVGQDAIKTALLLG-AI---DR--EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKA 169 (653)
Q Consensus 96 ~IvGq~~~k~aL~~~-av---~p--~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~ 169 (653)
++.|++.+|+.+... ++ .+ ...++||+||||||||++|++|+..+.
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~---------------------------- 372 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALN---------------------------- 372 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhc----------------------------
Confidence 588999999988431 11 11 233599999999999999999999874
Q ss_pred cccccccccccccCCCeEeCCCCC--cccceeeecchhhhhccCCcccccccccc--ccCceEEecccccCCHH----HH
Q 006254 170 EYDTAGNLKTQIARSPFVQIPLGV--TEDRLIGSVDVEESVKTGTTVFQPGLLAE--AHRGVLYIDEINLLDEG----IS 241 (653)
Q Consensus 170 ~~~~~~~~~~~~~~~~fv~l~~~~--~~~~l~G~~d~~~~~~~g~~~~~~Gll~~--A~~giL~IDEi~~l~~~----~~ 241 (653)
.+|+.+..+. ..+.+.|+.....+...|. ... .+.. ..+.|||||||+.+... ..
T Consensus 373 --------------~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~--i~~-~l~~~~~~~~villDEidk~~~~~~~~~~ 435 (775)
T TIGR00763 373 --------------RKFVRFSLGGVRDEAEIRGHRRTYVGAMPGR--IIQ-GLKKAKTKNPLFLLDEIDKIGSSFRGDPA 435 (775)
T ss_pred --------------CCeEEEeCCCcccHHHHcCCCCceeCCCCch--HHH-HHHHhCcCCCEEEEechhhcCCccCCCHH
Confidence 2333332211 1111222100000000010 000 1112 24569999999999653 35
Q ss_pred HHHHHHHHcCceEEeeC---CeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhh
Q 006254 242 NLLLNVLTEGVNIVERE---GISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERS 318 (653)
Q Consensus 242 ~~Ll~~l~~g~~~v~r~---G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~ 318 (653)
++|+.+++...+....+ +..+.. .++++|+|+| ....++++|++||.+ |.+. +++.+++.+|++....-
T Consensus 436 ~aLl~~ld~~~~~~f~d~~~~~~~d~-s~v~~I~TtN-~~~~i~~~L~~R~~v-i~~~-~~~~~e~~~I~~~~l~~---- 507 (775)
T TIGR00763 436 SALLEVLDPEQNNAFSDHYLDVPFDL-SKVIFIATAN-SIDTIPRPLLDRMEV-IELS-GYTEEEKLEIAKKYLIP---- 507 (775)
T ss_pred HHHHHhcCHHhcCccccccCCceecc-CCEEEEEecC-CchhCCHHHhCCeeE-EecC-CCCHHHHHHHHHHHHHH----
Confidence 88999998533211111 112221 3678999999 566799999999975 4887 57888888887643210
Q ss_pred hHHhhhhhhhhhHHHHHHHHHHhh-hcccCCCHHHHHHHHH-HHHhcCCCCcchHH
Q 006254 319 NEVFKMVEEETDLAKTQIILAREY-LKDVAIGREQLKYLVM-EALRGGCQGHRAEL 372 (653)
Q Consensus 319 ~~~~~~~~~~~~~l~~~i~~ar~~-l~~v~is~~~l~~l~~-~~~~~~i~s~R~~i 372 (653)
+....... ...+.++++++.+|++ ++...|+.+++..+
T Consensus 508 ----------------~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l~r~i 547 (775)
T TIGR00763 508 ----------------KALEDHGLKPDELKITDEALLLLIKYYTREAGVRNLERQI 547 (775)
T ss_pred ----------------HHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHHHHHH
Confidence 01111111 1247899999999887 44455665554444
No 138
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=99.45 E-value=5.9e-13 Score=129.93 Aligned_cols=88 Identities=60% Similarity=0.978 Sum_probs=82.0
Q ss_pred ceEEEEEeCCCCCChh-HHHHHHHHHHHHHHhHcCCCCeEEEEEeecCCcEEEcCCCcCHHHHHHHHhcCCCCCCCchHH
Q 006254 562 ALVIFVVDASGSMALN-RMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPCGGGSPLAH 640 (653)
Q Consensus 562 ~~v~~vvD~SgSM~~~-r~~~ak~a~~~ll~~ay~~rd~v~li~F~~~~a~~~lp~t~~~~~~~~~L~~l~~gG~Tpl~~ 640 (653)
.+|+||||+||||.+. ||..+|.++..++.+.+..+|+|+||+|.+..+.+++|+|.+...+...|..++++|+|+|+.
T Consensus 1 ~~v~lvlD~SgSM~~~~rl~~ak~a~~~~~~~~~~~~d~v~lv~F~~~~~~~~~~~t~~~~~~~~~l~~l~~~G~T~l~~ 80 (178)
T cd01451 1 NLVIFVVDASGSMAARHRMAAAKGAVLSLLRDAYQRRDKVALIAFRGTEAEVLLPPTRSVELAKRRLARLPTGGGTPLAA 80 (178)
T ss_pred CeEEEEEECCccCCCccHHHHHHHHHHHHHHHhhcCCCEEEEEEECCCCceEEeCCCCCHHHHHHHHHhCCCCCCCcHHH
Confidence 3689999999999875 999999999999988889999999999987668889999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 006254 641 GLSMGWAKC 649 (653)
Q Consensus 641 gl~~a~~~l 649 (653)
||..|++.+
T Consensus 81 aL~~a~~~l 89 (178)
T cd01451 81 GLLAAYELA 89 (178)
T ss_pred HHHHHHHHH
Confidence 999999988
No 139
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.44 E-value=8.4e-13 Score=150.74 Aligned_cols=243 Identities=16% Similarity=0.096 Sum_probs=150.6
Q ss_pred CCCCceechHHHHHHHH---Hhccc-CCCceE-EEECCCCCHHHHHHHHHHhhCCC------CeeeccccccCCCC-CCC
Q 006254 92 FPLAAVVGQDAIKTALL---LGAID-REIGGI-AISGRRGTAKTVMARGLHAILPP------IEVVVGSIANADPT-CPD 159 (653)
Q Consensus 92 ~~f~~IvGq~~~k~aL~---~~av~-p~~~gV-LL~GppGTGKT~lArala~~l~~------~~~v~~~~~nc~p~-~~~ 159 (653)
|-.+.|.|++.-++.|. ..++. ...+++ +|+|+||||||++++.+...|.. +..+..+++||... .+.
T Consensus 752 YVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~ 831 (1164)
T PTZ00112 752 VVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPN 831 (1164)
T ss_pred cCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHH
Confidence 33478999998777772 22332 233344 69999999999999999887632 11244567888431 111
Q ss_pred cccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCcccccccccccc--CceEEecccccCC
Q 006254 160 EWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAH--RGVLYIDEINLLD 237 (653)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~--~giL~IDEi~~l~ 237 (653)
.....+...+ . ...| +.+.....++- .++.. +.... --||+||||+.|.
T Consensus 832 sIYqvI~qqL----~-------g~~P----~~GlsS~evLe------rLF~~--------L~k~~r~v~IIILDEID~L~ 882 (1164)
T PTZ00112 832 AAYQVLYKQL----F-------NKKP----PNALNSFKILD------RLFNQ--------NKKDNRNVSILIIDEIDYLI 882 (1164)
T ss_pred HHHHHHHHHH----c-------CCCC----CccccHHHHHH------HHHhh--------hhcccccceEEEeehHhhhC
Confidence 1111111100 0 0000 00100000000 01000 00111 1389999999998
Q ss_pred HHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCC--CCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHH
Q 006254 238 EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE--EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQ 315 (653)
Q Consensus 238 ~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~--eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~ 315 (653)
...++.|+.++..-. . ...+++|||.+|.. ...|.+.+.+||+....+..|++.+++.+|+..+...
T Consensus 883 kK~QDVLYnLFR~~~--~--------s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~- 951 (1164)
T PTZ00112 883 TKTQKVLFTLFDWPT--K--------INSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLEN- 951 (1164)
T ss_pred ccHHHHHHHHHHHhh--c--------cCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHh-
Confidence 777777877776321 0 12357899999963 3467789999998753333589999999998744221
Q ss_pred hhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHH
Q 006254 316 ERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDL 395 (653)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv 395 (653)
+ ...+++++++++++.++..++ ..|.+|.+++.|..+ .+...|+++||
T Consensus 952 -----------------------A-----~gVLdDdAIELIArkVAq~SG-DARKALDILRrAgEi---kegskVT~eHV 999 (1164)
T PTZ00112 952 -----------------------C-----KEIIDHTAIQLCARKVANVSG-DIRKALQICRKAFEN---KRGQKIVPRDI 999 (1164)
T ss_pred -----------------------C-----CCCCCHHHHHHHHHhhhhcCC-HHHHHHHHHHHHHhh---cCCCccCHHHH
Confidence 0 235999999999998887766 589999999988875 35568999999
Q ss_pred HHHHHHHcCCC
Q 006254 396 KKAVELVILPR 406 (653)
Q Consensus 396 ~~A~~lvl~hR 406 (653)
.+|...+..-+
T Consensus 1000 rkAleeiE~sr 1010 (1164)
T PTZ00112 1000 TEATNQLFDSP 1010 (1164)
T ss_pred HHHHHHHHhhh
Confidence 99998765544
No 140
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.44 E-value=1.3e-12 Score=155.40 Aligned_cols=213 Identities=23% Similarity=0.281 Sum_probs=131.3
Q ss_pred CCceechHHHHHHHHHhc-------ccCC--CceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccc
Q 006254 94 LAAVVGQDAIKTALLLGA-------IDRE--IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDG 164 (653)
Q Consensus 94 f~~IvGq~~~k~aL~~~a-------v~p~--~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~ 164 (653)
+..|+||+.++..+..++ .+|. .+.+||.||+|||||++|++|+..+..-
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~--------------------- 625 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDS--------------------- 625 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcC---------------------
Confidence 567999999888773221 2332 2569999999999999999999987410
Q ss_pred ccccccccccccccccccCCCeEeCCCC-----CcccceeeecchhhhhccCCcccccccccc----ccCceEEeccccc
Q 006254 165 LDEKAEYDTAGNLKTQIARSPFVQIPLG-----VTEDRLIGSVDVEESVKTGTTVFQPGLLAE----AHRGVLYIDEINL 235 (653)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~fv~l~~~-----~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~----A~~giL~IDEi~~ 235 (653)
..+|+.+..+ ....+++|...- +.|.. .-|.+.. ...+|||||||+.
T Consensus 626 ------------------~~~~i~id~se~~~~~~~~~LiG~~pg----y~g~~--~~g~l~~~v~~~p~~vLllDEiek 681 (857)
T PRK10865 626 ------------------DDAMVRIDMSEFMEKHSVSRLVGAPPG----YVGYE--EGGYLTEAVRRRPYSVILLDEVEK 681 (857)
T ss_pred ------------------CCcEEEEEhHHhhhhhhHHHHhCCCCc----ccccc--hhHHHHHHHHhCCCCeEEEeehhh
Confidence 1223322211 122344442110 00100 0112222 2358999999999
Q ss_pred CCHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCC------------------------CCcccHHHHhhhcc
Q 006254 236 LDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE------------------------EGVVREHLLDRIAI 291 (653)
Q Consensus 236 l~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~------------------------eg~l~~aLldRf~~ 291 (653)
+++.+++.|++++++|.++- ..|..+... +.++|.|||.. .+.|+|+|++|++.
T Consensus 682 a~~~v~~~Ll~ile~g~l~d-~~gr~vd~r-n~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~ 759 (857)
T PRK10865 682 AHPDVFNILLQVLDDGRLTD-GQGRTVDFR-NTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDE 759 (857)
T ss_pred CCHHHHHHHHHHHhhCceec-CCceEEeec-ccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCe
Confidence 99999999999999998542 223333332 35689999962 13477899999988
Q ss_pred cccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchH
Q 006254 292 NLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAE 371 (653)
Q Consensus 292 ~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~ 371 (653)
++.+. |.+.+...+|+++.... +..++ .+.. -.+.++++++++|+++++.... |.|..
T Consensus 760 iivF~-PL~~edl~~Iv~~~L~~-----------------l~~rl--~~~g-i~l~is~~al~~L~~~gy~~~~-GARpL 817 (857)
T PRK10865 760 VVVFH-PLGEQHIASIAQIQLQR-----------------LYKRL--EERG-YEIHISDEALKLLSENGYDPVY-GARPL 817 (857)
T ss_pred eEecC-CCCHHHHHHHHHHHHHH-----------------HHHHH--HhCC-CcCcCCHHHHHHHHHcCCCccC-ChHHH
Confidence 76665 77887766666543221 11111 1111 2368999999999988765433 56655
Q ss_pred HHHH
Q 006254 372 LYAA 375 (653)
Q Consensus 372 i~ll 375 (653)
-.++
T Consensus 818 ~r~I 821 (857)
T PRK10865 818 KRAI 821 (857)
T ss_pred HHHH
Confidence 5444
No 141
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.6e-12 Score=149.10 Aligned_cols=211 Identities=25% Similarity=0.305 Sum_probs=141.8
Q ss_pred CceechHHHHHHHHHh-------cccC--CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccc
Q 006254 95 AAVVGQDAIKTALLLG-------AIDR--EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL 165 (653)
Q Consensus 95 ~~IvGq~~~k~aL~~~-------av~p--~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~ 165 (653)
..|+||+++..++.-+ +-+| ..|..||.||+|+|||.+|++||..|..-
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~---------------------- 548 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGD---------------------- 548 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCC----------------------
Confidence 4699999988877322 2233 24568999999999999999999998520
Q ss_pred cccccccccccccccccCCCeEeCCCC-----CcccceeeecchhhhhccCCcc-cccccccccc----CceEEeccccc
Q 006254 166 DEKAEYDTAGNLKTQIARSPFVQIPLG-----VTEDRLIGSVDVEESVKTGTTV-FQPGLLAEAH----RGVLYIDEINL 235 (653)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~fv~l~~~-----~~~~~l~G~~d~~~~~~~g~~~-~~~Gll~~A~----~giL~IDEi~~ 235 (653)
...++.+..+ .+.++|+|.-- |..- .+-|.|.+|- .+||++|||++
T Consensus 549 -----------------e~aliR~DMSEy~EkHsVSrLIGaPP-------GYVGyeeGG~LTEaVRr~PySViLlDEIEK 604 (786)
T COG0542 549 -----------------EQALIRIDMSEYMEKHSVSRLIGAPP-------GYVGYEEGGQLTEAVRRKPYSVILLDEIEK 604 (786)
T ss_pred -----------------CccceeechHHHHHHHHHHHHhCCCC-------CCceeccccchhHhhhcCCCeEEEechhhh
Confidence 1222222211 23345555421 1111 1235666652 35999999999
Q ss_pred CCHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCC---------------------------CcccHHHHhh
Q 006254 236 LDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE---------------------------GVVREHLLDR 288 (653)
Q Consensus 236 l~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e---------------------------g~l~~aLldR 288 (653)
..+++.|.||++|++|+++ .-.|..+.+. +.++|.|+|-.. ..|+|.|+.|
T Consensus 605 AHpdV~nilLQVlDdGrLT-D~~Gr~VdFr-NtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNR 682 (786)
T COG0542 605 AHPDVFNLLLQVLDDGRLT-DGQGRTVDFR-NTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNR 682 (786)
T ss_pred cCHHHHHHHHHHhcCCeee-cCCCCEEecc-eeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhh
Confidence 9999999999999999864 2234455444 578999999621 1377999999
Q ss_pred hcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCc
Q 006254 289 IAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGH 368 (653)
Q Consensus 289 f~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~ 368 (653)
++-+|.+. |.+.+...+|+..-+. .+..++. +.--.+.+++++.++|++.+..-.. |.
T Consensus 683 id~II~F~-~L~~~~l~~Iv~~~L~-----------------~l~~~L~---~~~i~l~~s~~a~~~l~~~gyd~~~-GA 740 (786)
T COG0542 683 IDEIIPFN-PLSKEVLERIVDLQLN-----------------RLAKRLA---ERGITLELSDEAKDFLAEKGYDPEY-GA 740 (786)
T ss_pred cccEEecc-CCCHHHHHHHHHHHHH-----------------HHHHHHH---hCCceEEECHHHHHHHHHhccCCCc-Cc
Confidence 99877776 7888888888764322 2222332 2233478999999999999876433 67
Q ss_pred chHHHHH
Q 006254 369 RAELYAA 375 (653)
Q Consensus 369 R~~i~ll 375 (653)
|....++
T Consensus 741 RpL~R~I 747 (786)
T COG0542 741 RPLRRAI 747 (786)
T ss_pred hHHHHHH
Confidence 7666554
No 142
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.43 E-value=9.3e-13 Score=145.96 Aligned_cols=235 Identities=20% Similarity=0.228 Sum_probs=151.1
Q ss_pred cCCCCCCCCceechHHHHHHHHHhcccC-CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccc
Q 006254 87 YGRQFFPLAAVVGQDAIKTALLLGAIDR-EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL 165 (653)
Q Consensus 87 ~~~~~~~f~~IvGq~~~k~aL~~~av~p-~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~ 165 (653)
.+.+|..|++++||+.+.+.|..+.... -.++-|+.||.|||||++||.+|+.+ ||--.-..++|..|
T Consensus 8 rKyRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~Akal-----------NC~~~~~~ePC~~C 76 (515)
T COG2812 8 RKYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKAL-----------NCENGPTAEPCGKC 76 (515)
T ss_pred HHhCcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHh-----------cCCCCCCCCcchhh
Confidence 4578889999999999999997665544 34569999999999999999999987 56432334466555
Q ss_pred cccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHH
Q 006254 166 DEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLL 245 (653)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll 245 (653)
.......... ...++++....-. |--|++.-...- .+.| ..+..-|.+|||++.|+.+..|+||
T Consensus 77 ~~Ck~I~~g~-------~~DviEiDaASn~----gVddiR~i~e~v--~y~P---~~~ryKVyiIDEvHMLS~~afNALL 140 (515)
T COG2812 77 ISCKEINEGS-------LIDVIEIDAASNT----GVDDIREIIEKV--NYAP---SEGRYKVYIIDEVHMLSKQAFNALL 140 (515)
T ss_pred hhhHhhhcCC-------cccchhhhhhhcc----ChHHHHHHHHHh--ccCC---ccccceEEEEecHHhhhHHHHHHHh
Confidence 5432111111 1112222211100 111111111100 1111 2334459999999999999999999
Q ss_pred HHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhh
Q 006254 246 NVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMV 325 (653)
Q Consensus 246 ~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~ 325 (653)
..+++- |..+.+|.+|. ++..++.-+++|+..+ .+. ..+.+ +|..+...+.
T Consensus 141 KTLEEP-------------P~hV~FIlATT-e~~Kip~TIlSRcq~f-~fk-ri~~~---~I~~~L~~i~---------- 191 (515)
T COG2812 141 KTLEEP-------------PSHVKFILATT-EPQKIPNTILSRCQRF-DFK-RLDLE---EIAKHLAAIL---------- 191 (515)
T ss_pred cccccC-------------ccCeEEEEecC-CcCcCchhhhhccccc-ccc-CCCHH---HHHHHHHHHH----------
Confidence 999874 55677887777 8888999999998766 555 23444 3433222221
Q ss_pred hhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHHHH
Q 006254 326 EEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVEL 401 (653)
Q Consensus 326 ~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~l 401 (653)
...++.++++++..++..+ .. |+|..+.++..+... |...|+.++|...+.+
T Consensus 192 ----------------~~E~I~~e~~aL~~ia~~a---~G-s~RDalslLDq~i~~----~~~~It~~~v~~~lG~ 243 (515)
T COG2812 192 ----------------DKEGINIEEDALSLIARAA---EG-SLRDALSLLDQAIAF----GEGEITLESVRDMLGL 243 (515)
T ss_pred ----------------HhcCCccCHHHHHHHHHHc---CC-ChhhHHHHHHHHHHc----cCCcccHHHHHHHhCC
Confidence 1246789999988886543 33 789999998655433 3367888888876653
No 143
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=4e-12 Score=139.50 Aligned_cols=238 Identities=15% Similarity=0.149 Sum_probs=143.7
Q ss_pred ccCCCCCCCCceechHHHHHHHHHhcccCCCce-EEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCC-----CC---
Q 006254 86 SYGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANAD-----PT--- 156 (653)
Q Consensus 86 ~~~~~~~~f~~IvGq~~~k~aL~~~av~p~~~g-VLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~-----p~--- 156 (653)
..+.+|..|++|+||+.+++.|.-++......+ +||+||+|+|||++|+++++.+. |. |+
T Consensus 7 ~~k~RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~-----------c~~~~~~~~~~~ 75 (397)
T PRK14955 7 ARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVN-----------CQRMIDDADYLQ 75 (397)
T ss_pred HHhcCCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhc-----------CCCCcCcccccc
Confidence 345788999999999999998866555444445 99999999999999999999874 41 10
Q ss_pred CCCcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccC
Q 006254 157 CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLL 236 (653)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l 236 (653)
.....|..|......... ....|+.+.... ..|.-++..... .....| ..+...|+||||++.+
T Consensus 76 ~~~~~c~~c~~c~~~~~~-------~~~n~~~~~~~~----~~~id~Ir~l~~--~~~~~p---~~~~~kvvIIdea~~l 139 (397)
T PRK14955 76 EVTEPCGECESCRDFDAG-------TSLNISEFDAAS----NNSVDDIRLLRE--NVRYGP---QKGRYRVYIIDEVHML 139 (397)
T ss_pred cCCCCCCCCHHHHHHhcC-------CCCCeEeecccc----cCCHHHHHHHHH--HHhhch---hcCCeEEEEEeChhhC
Confidence 001234333321111000 122344442211 111111111100 001111 1234569999999999
Q ss_pred CHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHh
Q 006254 237 DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQE 316 (653)
Q Consensus 237 ~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~ 316 (653)
+.+.++.|+..+++.. ...++|.+++ +...+.+.|.+|+..+ .+. |.+.++..+.+..
T Consensus 140 ~~~~~~~LLk~LEep~-------------~~t~~Il~t~-~~~kl~~tl~sR~~~v-~f~-~l~~~ei~~~l~~------ 197 (397)
T PRK14955 140 SIAAFNAFLKTLEEPP-------------PHAIFIFATT-ELHKIPATIASRCQRF-NFK-RIPLEEIQQQLQG------ 197 (397)
T ss_pred CHHHHHHHHHHHhcCC-------------CCeEEEEEeC-ChHHhHHHHHHHHHHh-hcC-CCCHHHHHHHHHH------
Confidence 9999999999998642 2345555555 4467778899998754 776 4444432222210
Q ss_pred hhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHH-cCCCCccHHHH
Q 006254 317 RSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAAL-EGREKVNVDDL 395 (653)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal-~gr~~Vt~eDv 395 (653)
+.. ...+.++++++++|++.+. . +.|..+..+..+..++.- .+...|+.+||
T Consensus 198 -------------------~~~----~~g~~i~~~al~~l~~~s~---g-~lr~a~~~L~kl~~~~~~~~~~~~It~~~v 250 (397)
T PRK14955 198 -------------------ICE----AEGISVDADALQLIGRKAQ---G-SMRDAQSILDQVIAFSVESEGEGSIRYDKV 250 (397)
T ss_pred -------------------HHH----HcCCCCCHHHHHHHHHHcC---C-CHHHHHHHHHHHHHhccccCCCCccCHHHH
Confidence 000 1257899999999987762 2 578888877655545432 23568999999
Q ss_pred HHHH
Q 006254 396 KKAV 399 (653)
Q Consensus 396 ~~A~ 399 (653)
.+++
T Consensus 251 ~~~v 254 (397)
T PRK14955 251 AELL 254 (397)
T ss_pred HHHH
Confidence 8776
No 144
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.42 E-value=3.4e-13 Score=142.38 Aligned_cols=145 Identities=16% Similarity=0.143 Sum_probs=99.1
Q ss_pred CceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeEeCCCCCcc
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTE 195 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~ 195 (653)
..+++|+||||||||++|+++++.+ +.+|+.++.+...
T Consensus 148 PlgllL~GPPGcGKTllAraiA~el------------------------------------------g~~~i~vsa~eL~ 185 (413)
T PLN00020 148 PLILGIWGGKGQGKSFQCELVFKKM------------------------------------------GIEPIVMSAGELE 185 (413)
T ss_pred CeEEEeeCCCCCCHHHHHHHHHHHc------------------------------------------CCCeEEEEHHHhh
Confidence 4679999999999999999999987 4678889988888
Q ss_pred cceeeecchhhhhccCCcccccccc-ccccCceEEecccccCCH-----------HHH-HHHHHHHHcCceEEeeCCe--
Q 006254 196 DRLIGSVDVEESVKTGTTVFQPGLL-AEAHRGVLYIDEINLLDE-----------GIS-NLLLNVLTEGVNIVEREGI-- 260 (653)
Q Consensus 196 ~~l~G~~d~~~~~~~g~~~~~~Gll-~~A~~giL~IDEi~~l~~-----------~~~-~~Ll~~l~~g~~~v~r~G~-- 260 (653)
+.++|.- ++.++.-...... .. .+....|||||||+.+-. .++ ..|+..|+. ...++-+|.
T Consensus 186 sk~vGEs--Ek~IR~~F~~A~~-~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~-p~~v~l~G~w~ 261 (413)
T PLN00020 186 SENAGEP--GKLIRQRYREAAD-IIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADN-PTNVSLGGDWR 261 (413)
T ss_pred cCcCCcH--HHHHHHHHHHHHH-HhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcC-Ccccccccccc
Confidence 9999952 2332211100000 00 012367999999996632 122 466676663 222333332
Q ss_pred eEEeecCcEEEEEecCCCCcccHHHHh--hhcccccccCCCCHhhHHHHHHH
Q 006254 261 SFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPMTFEDRVAAVGI 310 (653)
Q Consensus 261 s~~~p~~~~lIattNp~eg~l~~aLld--Rf~~~v~l~~p~~~~~r~~I~~~ 310 (653)
......++.||+|+| .+..|+++|++ ||+..+. .|+.++|.+|++.
T Consensus 262 ~~~~~~~V~VIaTTN-rpd~LDpALlRpGRfDk~i~---lPd~e~R~eIL~~ 309 (413)
T PLN00020 262 EKEEIPRVPIIVTGN-DFSTLYAPLIRDGRMEKFYW---APTREDRIGVVHG 309 (413)
T ss_pred ccccCCCceEEEeCC-CcccCCHhHcCCCCCCceeC---CCCHHHHHHHHHH
Confidence 122344688999999 99999999999 9999864 3589999999873
No 145
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=99.41 E-value=2.1e-13 Score=127.52 Aligned_cols=129 Identities=29% Similarity=0.422 Sum_probs=89.9
Q ss_pred echHHHHHHH--HHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccccccccc
Q 006254 98 VGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAG 175 (653)
Q Consensus 98 vGq~~~k~aL--~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~~~~~ 175 (653)
||.+..++.+ .+..+.....+|||+|++||||+++|++||....+
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~--------------------------------- 47 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGR--------------------------------- 47 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTT---------------------------------
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCc---------------------------------
Confidence 5666666666 34444567899999999999999999999997652
Q ss_pred cccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHHHHHHcCceEE
Q 006254 176 NLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIV 255 (653)
Q Consensus 176 ~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~l~~g~~~v 255 (653)
...+|+.+.+.... ..++..+.+|+|||+||+.|+.+.|..|++.++...
T Consensus 48 ------~~~~~~~~~~~~~~---------------------~~~l~~a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~--- 97 (138)
T PF14532_consen 48 ------ANGPFIVIDCASLP---------------------AELLEQAKGGTLYLKNIDRLSPEAQRRLLDLLKRQE--- 97 (138)
T ss_dssp ------CCS-CCCCCHHCTC---------------------HHHHHHCTTSEEEEECGCCS-HHHHHHHHHHHHHCT---
T ss_pred ------cCCCeEEechhhCc---------------------HHHHHHcCCCEEEECChHHCCHHHHHHHHHHHHhcC---
Confidence 13455544332211 124555689999999999999999999999998642
Q ss_pred eeCCeeEEeecCcEEEEEecCC------CCcccHHHHhhhcccccccCCC
Q 006254 256 EREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPM 299 (653)
Q Consensus 256 ~r~G~s~~~p~~~~lIattNp~------eg~l~~aLldRf~~~v~l~~p~ 299 (653)
..++++|+++..+ ++.+++.|++||... .|..|+
T Consensus 98 ---------~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~~~-~i~lPp 137 (138)
T PF14532_consen 98 ---------RSNVRLIASSSQDLEELVEEGRFSPDLYYRLSQL-EIHLPP 137 (138)
T ss_dssp ---------TTTSEEEEEECC-CCCHHHHSTHHHHHHHHCSTC-EEEE--
T ss_pred ---------CCCeEEEEEeCCCHHHHhhccchhHHHHHHhCCC-EEeCCC
Confidence 1256888888753 267999999999876 566554
No 146
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.9e-12 Score=128.30 Aligned_cols=195 Identities=22% Similarity=0.298 Sum_probs=132.1
Q ss_pred CceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeEeCCCCCcc
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTE 195 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~ 195 (653)
..||||+||||||||.+||+++... .+.|+.++.+...
T Consensus 181 PKGvlLygppgtGktLlaraVahht------------------------------------------~c~firvsgselv 218 (404)
T KOG0728|consen 181 PKGVLLYGPPGTGKTLLARAVAHHT------------------------------------------DCTFIRVSGSELV 218 (404)
T ss_pred CcceEEecCCCCchhHHHHHHHhhc------------------------------------------ceEEEEechHHHH
Confidence 4789999999999999999999864 4567877776666
Q ss_pred cceeeecchhhhhccCCccccccccccc---cCceEEecccccC-----------CHHHHHHHHHHHHcCceEEeeCCee
Q 006254 196 DRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEINLL-----------DEGISNLLLNVLTEGVNIVEREGIS 261 (653)
Q Consensus 196 ~~l~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~IDEi~~l-----------~~~~~~~Ll~~l~~g~~~v~r~G~s 261 (653)
.+++|. |.+-.+ -+|..| .+.|+|.|||+.+ +.++|...|..+.+-. |..
T Consensus 219 qk~ige---------gsrmvr-elfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqld------gfe 282 (404)
T KOG0728|consen 219 QKYIGE---------GSRMVR-ELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLD------GFE 282 (404)
T ss_pred HHHhhh---------hHHHHH-HHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcc------ccc
Confidence 666663 443222 234333 3679999999976 4578888888887532 222
Q ss_pred EEeecCcEEEEEecCCCCcccHHHHh--hhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHH
Q 006254 262 FKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILA 339 (653)
Q Consensus 262 ~~~p~~~~lIattNp~eg~l~~aLld--Rf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~a 339 (653)
...++-+|.+|| .-..|+++|++ |++..|+++ |++.+.|.+|++....-.+
T Consensus 283 --atknikvimatn-ridild~allrpgridrkiefp-~p~e~ar~~ilkihsrkmn----------------------- 335 (404)
T KOG0728|consen 283 --ATKNIKVIMATN-RIDILDPALLRPGRIDRKIEFP-PPNEEARLDILKIHSRKMN----------------------- 335 (404)
T ss_pred --cccceEEEEecc-ccccccHhhcCCCcccccccCC-CCCHHHHHHHHHHhhhhhc-----------------------
Confidence 223677899999 66678899987 999999998 6799999999874211100
Q ss_pred HhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHcCC
Q 006254 340 REYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVILP 405 (653)
Q Consensus 340 r~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~h 405 (653)
... -+. ++.+ +.+.+..|.-..-.+.--|.-+|.-+.|-.||.+|++-|+..|+..
T Consensus 336 --l~r--gi~---l~ki---aekm~gasgaevk~vcteagm~alrerrvhvtqedfemav~kvm~k 391 (404)
T KOG0728|consen 336 --LTR--GIN---LRKI---AEKMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 391 (404)
T ss_pred --hhc--ccC---HHHH---HHhCCCCccchhhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 000 111 2222 3334333333333444456667777778899999999999887653
No 147
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=8.5e-13 Score=135.02 Aligned_cols=214 Identities=24% Similarity=0.354 Sum_probs=140.3
Q ss_pred CceechHHHHHHHHHhcccC---------------CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCC
Q 006254 95 AAVVGQDAIKTALLLGAIDR---------------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPD 159 (653)
Q Consensus 95 ~~IvGq~~~k~aL~~~av~p---------------~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~ 159 (653)
.-|+||+.+|+.|-+|..|- ...+|||.||+|+|||.||+.||+.|
T Consensus 61 ~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~L------------------- 121 (408)
T COG1219 61 EYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKIL------------------- 121 (408)
T ss_pred hheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHh-------------------
Confidence 45899999999885433321 23469999999999999999999998
Q ss_pred cccccccccccccccccccccccCCCeEeCC-CCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCC-
Q 006254 160 EWEDGLDEKAEYDTAGNLKTQIARSPFVQIP-LGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLD- 237 (653)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~-~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~- 237 (653)
+.||-.-. ..+|+..++|. |++.-+..= ......-.++|.+||+|||||+.+.
T Consensus 122 -----------------------nVPFaiADATtLTEAGYVGE-DVENillkL-lqaadydV~rAerGIIyIDEIDKIar 176 (408)
T COG1219 122 -----------------------NVPFAIADATTLTEAGYVGE-DVENILLKL-LQAADYDVERAERGIIYIDEIDKIAR 176 (408)
T ss_pred -----------------------CCCeeeccccchhhccccch-hHHHHHHHH-HHHcccCHHHHhCCeEEEechhhhhc
Confidence 56776554 44778888885 444322100 0011234567789999999999873
Q ss_pred -------------HHHHHHHHHHHHcCceEEeeCCeeEEeec-CcEEEEEecC---CCC---------------------
Q 006254 238 -------------EGISNLLLNVLTEGVNIVEREGISFKHPC-KPLLIATYNP---EEG--------------------- 279 (653)
Q Consensus 238 -------------~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~-~~~lIattNp---~eg--------------------- 279 (653)
..+|.+||..++--...|..-|+- .||. .|+-|-|+|. +.|
T Consensus 177 kSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGR-KHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~ 255 (408)
T COG1219 177 KSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGR-KHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFG 255 (408)
T ss_pred cCCCCCcccccCchHHHHHHHHHHcCceeccCCCCCC-CCCccceEEEcccceeEEeccccccHHHHHHHhccCCccccc
Confidence 468999999999777667666653 3443 4777777775 111
Q ss_pred ---------------------------cccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHH
Q 006254 280 ---------------------------VVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLA 332 (653)
Q Consensus 280 ---------------------------~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l 332 (653)
-|-|.|.-||.++..+. +.+.+....|+. .|.
T Consensus 256 a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~-~Lde~aLv~ILt-------ePk------------- 314 (408)
T COG1219 256 AEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLE-ELDEDALVQILT-------EPK------------- 314 (408)
T ss_pred ccccchhhhhhHHHHHHhcChHHHHHcCCcHHHhcccceeeehh-hcCHHHHHHHHh-------ccc-------------
Confidence 13366666777776666 566666666643 111
Q ss_pred HHHHHHHHhhh---c--ccCCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 006254 333 KTQIILAREYL---K--DVAIGREQLKYLVMEALRGGCQGHRAELYAAR 376 (653)
Q Consensus 333 ~~~i~~ar~~l---~--~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr 376 (653)
..+...++.+ . ...+.++++..+++.+..... |.|++..+++
T Consensus 315 -NAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~~rkT-GARGLRsI~E 361 (408)
T COG1219 315 -NALVKQYQKLFEMDGVELEFTEEALKAIAKKAIERKT-GARGLRSIIE 361 (408)
T ss_pred -HHHHHHHHHHhcccCceEEEcHHHHHHHHHHHHHhcc-chhHHHHHHH
Confidence 1111111111 1 257899999999998877765 6777666653
No 148
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.41 E-value=3.1e-12 Score=146.90 Aligned_cols=227 Identities=19% Similarity=0.213 Sum_probs=137.4
Q ss_pred CCCCCCCCceechHHHHHHHHHhcccCCCce-EEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCC-CCCCCcccccc
Q 006254 88 GRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANAD-PTCPDEWEDGL 165 (653)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~~~av~p~~~g-VLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~-p~~~~~~~~~~ 165 (653)
+.+|..|++|+||+.+++.|.-++......+ +||+||+|+|||++|+.++..+. |. +......|..|
T Consensus 11 KyRP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~Ln-----------C~~~~~~~~pC~~C 79 (725)
T PRK07133 11 KYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALN-----------CSHKTDLLEPCQEC 79 (725)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc-----------ccccCCCCCchhHH
Confidence 5678899999999999998866555444444 79999999999999999999874 42 11222345555
Q ss_pred cccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHH
Q 006254 166 DEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLL 245 (653)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll 245 (653)
..... ...-++.+.... -.|.-++.. +... ....| ..+...|++|||++.|..+.+++||
T Consensus 80 ~~~~~-----------~~~Dvieidaas----n~~vd~IRe-Lie~-~~~~P---~~g~~KV~IIDEa~~LT~~A~NALL 139 (725)
T PRK07133 80 IENVN-----------NSLDIIEMDAAS----NNGVDEIRE-LIEN-VKNLP---TQSKYKIYIIDEVHMLSKSAFNALL 139 (725)
T ss_pred HHhhc-----------CCCcEEEEeccc----cCCHHHHHH-HHHH-HHhch---hcCCCEEEEEEChhhCCHHHHHHHH
Confidence 43110 011222222110 011101111 1000 00011 1234569999999999999999999
Q ss_pred HHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhh
Q 006254 246 NVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMV 325 (653)
Q Consensus 246 ~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~ 325 (653)
..|++-. ..+++|.+++ ....+.+.+++|+.. +.+. |+..++..+.+..+
T Consensus 140 KtLEEPP-------------~~tifILaTt-e~~KLl~TI~SRcq~-ieF~-~L~~eeI~~~L~~i-------------- 189 (725)
T PRK07133 140 KTLEEPP-------------KHVIFILATT-EVHKIPLTILSRVQR-FNFR-RISEDEIVSRLEFI-------------- 189 (725)
T ss_pred HHhhcCC-------------CceEEEEEcC-ChhhhhHHHHhhcee-EEcc-CCCHHHHHHHHHHH--------------
Confidence 9999742 3455666665 556888899999964 4776 45555444333311
Q ss_pred hhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHH
Q 006254 326 EEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKA 398 (653)
Q Consensus 326 ~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A 398 (653)
.. ...+.+++++++.++..+. . ++|.++.++..+.. + +...|+.++|.++
T Consensus 190 -----------l~----kegI~id~eAl~~LA~lS~---G-slR~AlslLekl~~---y-~~~~It~e~V~el 239 (725)
T PRK07133 190 -----------LE----KENISYEKNALKLIAKLSS---G-SLRDALSIAEQVSI---F-GNNKITLKNVEEL 239 (725)
T ss_pred -----------HH----HcCCCCCHHHHHHHHHHcC---C-CHHHHHHHHHHHHH---h-ccCCCCHHHHHHH
Confidence 00 1136788888888876653 2 57877777655432 2 2334777777653
No 149
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.1e-12 Score=141.70 Aligned_cols=243 Identities=17% Similarity=0.130 Sum_probs=156.9
Q ss_pred CceechHHHHHHHHHh---ccc-CCCceEEEECCCCCHHHHHHHHHHhhCCCCeeec-cccccCCCCCCCcccccccccc
Q 006254 95 AAVVGQDAIKTALLLG---AID-REIGGIAISGRRGTAKTVMARGLHAILPPIEVVV-GSIANADPTCPDEWEDGLDEKA 169 (653)
Q Consensus 95 ~~IvGq~~~k~aL~~~---av~-p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~-~~~~nc~p~~~~~~~~~~~~~~ 169 (653)
+.+.+.+.-+..|... ++. ....+++|+|+||||||.+++.+.+.+....... .+++||......
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~---------- 86 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTP---------- 86 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCH----------
Confidence 4489999888877332 222 1334499999999999999999999986543323 689999443211
Q ss_pred cccccccccccccCCCeEeC-CCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHHHHH
Q 006254 170 EYDTAGNLKTQIARSPFVQI-PLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVL 248 (653)
Q Consensus 170 ~~~~~~~~~~~~~~~~fv~l-~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~l 248 (653)
.......... |..+ ..+....+++..+ ...+-.....-||+|||+|.|-....+.|+..+
T Consensus 87 ----~~i~~~i~~~--~~~~p~~g~~~~~~~~~l-------------~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~ 147 (366)
T COG1474 87 ----YQVLSKILNK--LGKVPLTGDSSLEILKRL-------------YDNLSKKGKTVIVILDEVDALVDKDGEVLYSLL 147 (366)
T ss_pred ----HHHHHHHHHH--cCCCCCCCCchHHHHHHH-------------HHHHHhcCCeEEEEEcchhhhccccchHHHHHH
Confidence 1100000000 0011 1122222222211 000001112238889999999776434444444
Q ss_pred HcCceEEeeCCeeEEeecCcEEEEEecCC--CCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhhh
Q 006254 249 TEGVNIVEREGISFKHPCKPLLIATYNPE--EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVE 326 (653)
Q Consensus 249 ~~g~~~v~r~G~s~~~p~~~~lIattNp~--eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~ 326 (653)
..... + ..++.+|+.+|.. ...+++-+.++|+..--...|++.++..+|+..+
T Consensus 148 r~~~~-----~-----~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R--------------- 202 (366)
T COG1474 148 RAPGE-----N-----KVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRER--------------- 202 (366)
T ss_pred hhccc-----c-----ceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHH---------------
Confidence 33221 0 2357899999954 3468888889998874344589999999988733
Q ss_pred hhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHcC
Q 006254 327 EETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVIL 404 (653)
Q Consensus 327 ~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~ 404 (653)
+...+..-.++++++++++..+...+. ..|.++.++|.|..+|..+++..|+++|+..|...+-.
T Consensus 203 ------------~~~~~~~~~~~~~vl~lia~~~a~~~G-DAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~~~ 267 (366)
T COG1474 203 ------------VEEGFSAGVIDDDVLKLIAALVAAESG-DARKAIDILRRAGEIAEREGSRKVSEDHVREAQEEIER 267 (366)
T ss_pred ------------HHhhccCCCcCccHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHhhH
Confidence 223355678999999999999888777 69999999999999999999999999999999554433
No 150
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.41 E-value=2.9e-12 Score=145.53 Aligned_cols=233 Identities=18% Similarity=0.196 Sum_probs=141.6
Q ss_pred cCCCCCCCCceechHHHHHHHHHhcccCCCce-EEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccc
Q 006254 87 YGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL 165 (653)
Q Consensus 87 ~~~~~~~f~~IvGq~~~k~aL~~~av~p~~~g-VLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~ 165 (653)
.+.+|..|++|+||+.++..|..++-+....+ +||+||+|+|||++|+++++.+. |........|..|
T Consensus 8 ~kyRP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~-----------c~~~~~~~pC~~C 76 (563)
T PRK06647 8 TKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLN-----------CVNGPTPMPCGEC 76 (563)
T ss_pred HHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhc-----------cccCCCCCCCccc
Confidence 35678899999999999999876555544454 89999999999999999999874 4322112233333
Q ss_pred cccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHH
Q 006254 166 DEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLL 245 (653)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll 245 (653)
......... ....|+.+.... -.|.-|+.. +... ....| ..+...|++|||++.|+.+.++.||
T Consensus 77 ~~C~~i~~~-------~~~dv~~idgas----~~~vddIr~-l~e~-~~~~p---~~~~~KVvIIDEa~~Ls~~a~naLL 140 (563)
T PRK06647 77 SSCKSIDND-------NSLDVIEIDGAS----NTSVQDVRQ-IKEE-IMFPP---ASSRYRVYIIDEVHMLSNSAFNALL 140 (563)
T ss_pred hHHHHHHcC-------CCCCeEEecCcc----cCCHHHHHH-HHHH-HHhch---hcCCCEEEEEEChhhcCHHHHHHHH
Confidence 221111000 122333332111 011111111 1000 00111 1245569999999999999999999
Q ss_pred HHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhh
Q 006254 246 NVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMV 325 (653)
Q Consensus 246 ~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~ 325 (653)
..+++. |..+++|.+++ +...+.+.|++|+..+ .+. ++..++..+.+..
T Consensus 141 K~LEep-------------p~~~vfI~~tt-e~~kL~~tI~SRc~~~-~f~-~l~~~el~~~L~~--------------- 189 (563)
T PRK06647 141 KTIEEP-------------PPYIVFIFATT-EVHKLPATIKSRCQHF-NFR-LLSLEKIYNMLKK--------------- 189 (563)
T ss_pred HhhccC-------------CCCEEEEEecC-ChHHhHHHHHHhceEE-Eec-CCCHHHHHHHHHH---------------
Confidence 999863 23456666665 4567888999998755 676 4455543333321
Q ss_pred hhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHH
Q 006254 326 EEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (653)
Q Consensus 326 ~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~ 399 (653)
+.. ...+.++++++.+|+..+ +. +.|..+.++..+.. +.+ ..|+.++|..++
T Consensus 190 ----------i~~----~egi~id~eAl~lLa~~s---~G-dlR~alslLdklis---~~~-~~It~e~V~~ll 241 (563)
T PRK06647 190 ----------VCL----EDQIKYEDEALKWIAYKS---TG-SVRDAYTLFDQVVS---FSD-SDITLEQIRSKM 241 (563)
T ss_pred ----------HHH----HcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHHh---hcC-CCCCHHHHHHHh
Confidence 111 135789999999987654 22 58888888754432 333 468888887754
No 151
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.41 E-value=2.9e-12 Score=150.59 Aligned_cols=229 Identities=18% Similarity=0.256 Sum_probs=139.0
Q ss_pred ceechHHHHHHHH--Hhcc---c-CCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccc
Q 006254 96 AVVGQDAIKTALL--LGAI---D-REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKA 169 (653)
Q Consensus 96 ~IvGq~~~k~aL~--~~av---~-p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~ 169 (653)
++.|++.+|+.++ ++.. . .....++|+||||+|||++++.++..++
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~---------------------------- 374 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATG---------------------------- 374 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhC----------------------------
Confidence 4899999999885 2221 1 1334599999999999999999999875
Q ss_pred cccccccccccccCCCeEeCCCCC--cccceeeecchhhhhccCCccccccccc----c--ccCceEEecccccCCHHH-
Q 006254 170 EYDTAGNLKTQIARSPFVQIPLGV--TEDRLIGSVDVEESVKTGTTVFQPGLLA----E--AHRGVLYIDEINLLDEGI- 240 (653)
Q Consensus 170 ~~~~~~~~~~~~~~~~fv~l~~~~--~~~~l~G~~d~~~~~~~g~~~~~~Gll~----~--A~~giL~IDEi~~l~~~~- 240 (653)
.+|+.+..+. .+..+.|+.. .+.|. .+|.+. . ..+.|+|||||++++...
T Consensus 375 --------------~~~~~i~~~~~~d~~~i~g~~~----~~~g~---~~G~~~~~l~~~~~~~~villDEidk~~~~~~ 433 (784)
T PRK10787 375 --------------RKYVRMALGGVRDEAEIRGHRR----TYIGS---MPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMR 433 (784)
T ss_pred --------------CCEEEEEcCCCCCHHHhccchh----ccCCC---CCcHHHHHHHhcCCCCCEEEEEChhhcccccC
Confidence 2344333221 1223333210 01111 233221 1 235699999999998765
Q ss_pred ---HHHHHHHHHcCceEEeeCCe---eEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHH
Q 006254 241 ---SNLLLNVLTEGVNIVEREGI---SFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQF 314 (653)
Q Consensus 241 ---~~~Ll~~l~~g~~~v~r~G~---s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~ 314 (653)
+++|+.+++.+.+....+.. .+.. .++++|+|+|.. .++++|+|||.++ .+. +++.++..+|.++.+.-
T Consensus 434 g~~~~aLlevld~~~~~~~~d~~~~~~~dl-s~v~~i~TaN~~--~i~~aLl~R~~ii-~~~-~~t~eek~~Ia~~~L~~ 508 (784)
T PRK10787 434 GDPASALLEVLDPEQNVAFSDHYLEVDYDL-SDVMFVATSNSM--NIPAPLLDRMEVI-RLS-GYTEDEKLNIAKRHLLP 508 (784)
T ss_pred CCHHHHHHHHhccccEEEEecccccccccC-CceEEEEcCCCC--CCCHHHhcceeee-ecC-CCCHHHHHHHHHHhhhH
Confidence 59999999987654443321 1111 367899999965 4999999999765 666 67888888887754311
Q ss_pred HhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHH-HHHHHHH---HHcCC---
Q 006254 315 QERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAA-RVAKCLA---ALEGR--- 387 (653)
Q Consensus 315 ~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~ll-r~Ara~A---al~gr--- 387 (653)
..+.........+.++++++++|++.|.. -.|.|.....+ +.++..+ .+.+.
T Consensus 509 -------------------k~~~~~~l~~~~l~i~~~ai~~ii~~yt~--e~GaR~LeR~I~~i~r~~l~~~~~~~~~~~ 567 (784)
T PRK10787 509 -------------------KQIERNALKKGELTVDDSAIIGIIRYYTR--EAGVRSLEREISKLCRKAVKQLLLDKSLKH 567 (784)
T ss_pred -------------------HHHHHhCCCCCeEEECHHHHHHHHHhCCc--ccCCcHHHHHHHHHHHHHHHHHHhcCCCce
Confidence 11111111113578999999999974432 22455543332 2233322 23332
Q ss_pred CCccHHHHHHHH
Q 006254 388 EKVNVDDLKKAV 399 (653)
Q Consensus 388 ~~Vt~eDv~~A~ 399 (653)
-.|+.+++.+.+
T Consensus 568 v~v~~~~~~~~l 579 (784)
T PRK10787 568 IEINGDNLHDYL 579 (784)
T ss_pred eeecHHHHHHHh
Confidence 257777776554
No 152
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=7.6e-12 Score=140.02 Aligned_cols=232 Identities=19% Similarity=0.195 Sum_probs=140.6
Q ss_pred CCCCCCCCceechHHHHHHHHHhcccCCCce-EEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccccc
Q 006254 88 GRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLD 166 (653)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~~~av~p~~~g-VLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~ 166 (653)
+.+|..|++|+||+.++..|.-+.-.....+ +||+||+|+|||++|+.++..+. |........|..|.
T Consensus 9 kyRP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~-----------c~~~~~~~pc~~c~ 77 (486)
T PRK14953 9 KYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLN-----------CLNPQEGEPCGKCE 77 (486)
T ss_pred hhCCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-----------CcCCCCCCCCCccH
Confidence 5678899999999999998866554444455 68899999999999999999874 31111112333332
Q ss_pred ccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHHH
Q 006254 167 EKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLN 246 (653)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~ 246 (653)
........ ....++.+..... .| +|--+.+.... ...| ..+...|++|||++.|+...++.|+.
T Consensus 78 nc~~i~~g-------~~~d~~eidaas~----~g-vd~ir~I~~~~-~~~P---~~~~~KVvIIDEad~Lt~~a~naLLk 141 (486)
T PRK14953 78 NCVEIDKG-------SFPDLIEIDAASN----RG-IDDIRALRDAV-SYTP---IKGKYKVYIIDEAHMLTKEAFNALLK 141 (486)
T ss_pred HHHHHhcC-------CCCcEEEEeCccC----CC-HHHHHHHHHHH-HhCc---ccCCeeEEEEEChhhcCHHHHHHHHH
Confidence 21111000 0122333322110 11 11001111000 0111 12345799999999999999999999
Q ss_pred HHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhhh
Q 006254 247 VLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVE 326 (653)
Q Consensus 247 ~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~ 326 (653)
.+++.. ..+++|.++| +...+.+.+.+|+.. +.+. |++.++....+..+
T Consensus 142 ~LEepp-------------~~~v~Il~tt-~~~kl~~tI~SRc~~-i~f~-~ls~~el~~~L~~i--------------- 190 (486)
T PRK14953 142 TLEEPP-------------PRTIFILCTT-EYDKIPPTILSRCQR-FIFS-KPTKEQIKEYLKRI--------------- 190 (486)
T ss_pred HHhcCC-------------CCeEEEEEEC-CHHHHHHHHHHhceE-EEcC-CCCHHHHHHHHHHH---------------
Confidence 998642 2345555555 445577889999865 4776 55666544443311
Q ss_pred hhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHH
Q 006254 327 EETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (653)
Q Consensus 327 ~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~ 399 (653)
. ....+.++++++++|++.+. . ++|..+.++..+..+ +...||.++|..++
T Consensus 191 ----------~----k~egi~id~~al~~La~~s~---G-~lr~al~~Ldkl~~~----~~~~It~~~V~~~l 241 (486)
T PRK14953 191 ----------C----NEEKIEYEEKALDLLAQASE---G-GMRDAASLLDQASTY----GEGKVTIKVVEEFL 241 (486)
T ss_pred ----------H----HHcCCCCCHHHHHHHHHHcC---C-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHh
Confidence 0 11246789999999887643 2 589888888765433 34579999998764
No 153
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=4.4e-13 Score=133.78 Aligned_cols=228 Identities=19% Similarity=0.260 Sum_probs=149.3
Q ss_pred CCCCCCCCceechHHHHHHHHH----hcccC---------CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCC
Q 006254 88 GRQFFPLAAVVGQDAIKTALLL----GAIDR---------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANAD 154 (653)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~~----~av~p---------~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~ 154 (653)
+++.++.++|-|-.+-+..|.. -++.| -..|||++||||||||.+||++++.-
T Consensus 170 ekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt-------------- 235 (435)
T KOG0729|consen 170 EKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT-------------- 235 (435)
T ss_pred cCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc--------------
Confidence 4567889999998776665521 12222 13679999999999999999999853
Q ss_pred CCCCCcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccc---cCceEEec
Q 006254 155 PTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYID 231 (653)
Q Consensus 155 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~ID 231 (653)
+..|+.+-.+....+++| +|.+-.+ -+|..| .-+|+|+|
T Consensus 236 ----------------------------dacfirvigselvqkyvg---------egarmvr-elf~martkkaciiffd 277 (435)
T KOG0729|consen 236 ----------------------------DACFIRVIGSELVQKYVG---------EGARMVR-ELFEMARTKKACIIFFD 277 (435)
T ss_pred ----------------------------CceEEeehhHHHHHHHhh---------hhHHHHH-HHHHHhcccceEEEEee
Confidence 456665433333334444 4554322 355555 34799999
Q ss_pred ccccC-----------CHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHh--hhcccccccCC
Q 006254 232 EINLL-----------DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLP 298 (653)
Q Consensus 232 Ei~~l-----------~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLld--Rf~~~v~l~~p 298 (653)
||+.+ +.++|...|.++.+-. |. .-..++-++.+|| .+..|+|+|++ |++..|++..|
T Consensus 278 eidaiggarfddg~ggdnevqrtmleli~qld------gf--dprgnikvlmatn-rpdtldpallrpgrldrkvef~lp 348 (435)
T KOG0729|consen 278 EIDAIGGARFDDGAGGDNEVQRTMLELINQLD------GF--DPRGNIKVLMATN-RPDTLDPALLRPGRLDRKVEFGLP 348 (435)
T ss_pred ccccccCccccCCCCCcHHHHHHHHHHHHhcc------CC--CCCCCeEEEeecC-CCCCcCHhhcCCcccccceeccCC
Confidence 99865 3478888888886532 11 1122567888899 88889999997 99999999975
Q ss_pred CCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHH-HHHHHHHHHhcCCCCcchHH-HHHH
Q 006254 299 MTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQ-LKYLVMEALRGGCQGHRAEL-YAAR 376 (653)
Q Consensus 299 ~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~-l~~l~~~~~~~~i~s~R~~i-~llr 376 (653)
+.+.|..|++... + ...+..++ .++|+.+|-..-. ++| .+.-
T Consensus 349 -dlegrt~i~kiha---------------------------k----smsverdir~ellarlcpnstg----aeirsvct 392 (435)
T KOG0729|consen 349 -DLEGRTHIFKIHA---------------------------K----SMSVERDIRFELLARLCPNSTG----AEIRSVCT 392 (435)
T ss_pred -cccccceeEEEec---------------------------c----ccccccchhHHHHHhhCCCCcc----hHHHHHHH
Confidence 8888887765210 0 11122222 3556666644322 222 2333
Q ss_pred HHHHHHHHcCCCCccHHHHHHHHHHHcCCCcccCCC
Q 006254 377 VAKCLAALEGREKVNVDDLKKAVELVILPRSIINET 412 (653)
Q Consensus 377 ~Ara~Aal~gr~~Vt~eDv~~A~~lvl~hR~~~~~~ 412 (653)
-|.-+|--..|..+|+.|+-.|+..|...-..|..+
T Consensus 393 eagmfairarrk~atekdfl~av~kvvkgy~kfsat 428 (435)
T KOG0729|consen 393 EAGMFAIRARRKVATEKDFLDAVNKVVKGYAKFSAT 428 (435)
T ss_pred HhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccCC
Confidence 444555556678899999999999998877765543
No 154
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.40 E-value=7.5e-12 Score=126.60 Aligned_cols=135 Identities=25% Similarity=0.357 Sum_probs=108.9
Q ss_pred CceEEecccccCCHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCC------------CCcccHHHHhhhccc
Q 006254 225 RGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE------------EGVVREHLLDRIAIN 292 (653)
Q Consensus 225 ~giL~IDEi~~l~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~------------eg~l~~aLldRf~~~ 292 (653)
+|+|||||++-|+-+....|..++++-. .-++|.++|.. +.-++++|+||+-++
T Consensus 297 PGVLFIDEVhMLDiEcFTyL~kalES~i--------------aPivifAsNrG~~~irGt~d~~sPhGip~dllDRl~Ii 362 (456)
T KOG1942|consen 297 PGVLFIDEVHMLDIECFTYLHKALESPI--------------APIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLII 362 (456)
T ss_pred CcceEeeehhhhhhHHHHHHHHHhcCCC--------------CceEEEecCCcceeecCCcCCCCCCCCCHHHhhheeEE
Confidence 7999999999999999999999998764 34678888862 234778999999766
Q ss_pred ccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHH
Q 006254 293 LSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAEL 372 (653)
Q Consensus 293 v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i 372 (653)
-.+ +++.++..+|+.++ ....++.++++++.++.++.... ++|-.+
T Consensus 363 rt~--~y~~~e~r~Ii~~R-----------------------------a~~E~l~~~e~a~~~l~~~gt~t---sLRy~v 408 (456)
T KOG1942|consen 363 RTL--PYDEEEIRQIIKIR-----------------------------AQVEGLQVEEEALDLLAEIGTST---SLRYAV 408 (456)
T ss_pred eec--cCCHHHHHHHHHHH-----------------------------HhhhcceecHHHHHHHHhhccch---hHHHHH
Confidence 333 67777766666543 33456789999999998875544 789999
Q ss_pred HHHHHHHHHHHHcCCCCccHHHHHHHHHHHcCCCc
Q 006254 373 YAARVAKCLAALEGREKVNVDDLKKAVELVILPRS 407 (653)
Q Consensus 373 ~llr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~hR~ 407 (653)
.++--|.-+|...|++.|..+||+++..|-+-.++
T Consensus 409 qLl~p~~~~ak~~g~~~i~v~dvee~~~Lf~Dak~ 443 (456)
T KOG1942|consen 409 QLLTPASILAKTNGRKEISVEDVEEVTELFLDAKR 443 (456)
T ss_pred HhcCHHHHHHHHcCCceeecccHHHHHHHHHhchh
Confidence 99999999999999999999999999998887554
No 155
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.39 E-value=9.7e-12 Score=131.92 Aligned_cols=214 Identities=19% Similarity=0.245 Sum_probs=135.9
Q ss_pred cCCCCCCCCceechHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccccc
Q 006254 87 YGRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLD 166 (653)
Q Consensus 87 ~~~~~~~f~~IvGq~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~ 166 (653)
.+.+|..|++++|++.++..|...+-.....+++|+||+|||||++++.+++.+.... |
T Consensus 9 ~kyrP~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~----------------~----- 67 (319)
T PRK00440 9 EKYRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGED----------------W----- 67 (319)
T ss_pred hhhCCCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCc----------------c-----
Confidence 3577889999999999999886655455556799999999999999999999874100 0
Q ss_pred ccccccccccccccccCCCeEeCCCCCcccceeeecch-hhhhccCCccccccccccccCceEEecccccCCHHHHHHHH
Q 006254 167 EKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDV-EESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLL 245 (653)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~-~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll 245 (653)
...++.+.... .. + .+. ...+..-. ....+..+...+|+|||++.++...++.|+
T Consensus 68 ----------------~~~~i~~~~~~--~~--~-~~~~~~~i~~~~---~~~~~~~~~~~vviiDe~~~l~~~~~~~L~ 123 (319)
T PRK00440 68 ----------------RENFLELNASD--ER--G-IDVIRNKIKEFA---RTAPVGGAPFKIIFLDEADNLTSDAQQALR 123 (319)
T ss_pred ----------------ccceEEecccc--cc--c-hHHHHHHHHHHH---hcCCCCCCCceEEEEeCcccCCHHHHHHHH
Confidence 11233332111 00 0 000 00000000 000111233569999999999999999999
Q ss_pred HHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhh
Q 006254 246 NVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMV 325 (653)
Q Consensus 246 ~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~ 325 (653)
..++... ....+|.++| ....+.+++.+|+.. +.+. |++.++...++...
T Consensus 124 ~~le~~~-------------~~~~lIl~~~-~~~~l~~~l~sr~~~-~~~~-~l~~~ei~~~l~~~-------------- 173 (319)
T PRK00440 124 RTMEMYS-------------QNTRFILSCN-YSSKIIDPIQSRCAV-FRFS-PLKKEAVAERLRYI-------------- 173 (319)
T ss_pred HHHhcCC-------------CCCeEEEEeC-CccccchhHHHHhhe-eeeC-CCCHHHHHHHHHHH--------------
Confidence 9987532 1335666666 445666789999876 4776 55655444443311
Q ss_pred hhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHH
Q 006254 326 EEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (653)
Q Consensus 326 ~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~ 399 (653)
. . ...+.++++++++++..+ +. ..|..+..++.+... ...||.++|..++
T Consensus 174 -----------~--~--~~~~~i~~~al~~l~~~~---~g-d~r~~~~~l~~~~~~-----~~~it~~~v~~~~ 223 (319)
T PRK00440 174 -----------A--E--NEGIEITDDALEAIYYVS---EG-DMRKAINALQAAAAT-----GKEVTEEAVYKIT 223 (319)
T ss_pred -----------H--H--HcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHHHc-----CCCCCHHHHHHHh
Confidence 0 0 125679999999998764 22 578888888654332 3579999998776
No 156
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.39 E-value=7e-12 Score=127.94 Aligned_cols=205 Identities=17% Similarity=0.206 Sum_probs=124.2
Q ss_pred CCCCCCcee-c-hHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccc
Q 006254 90 QFFPLAAVV-G-QDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDE 167 (653)
Q Consensus 90 ~~~~f~~Iv-G-q~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~ 167 (653)
..++|++++ | +..+..++....-.+...+++|+||+|||||+|++++++.+...
T Consensus 17 ~~~~fd~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~------------------------ 72 (235)
T PRK08084 17 DDETFASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR------------------------ 72 (235)
T ss_pred CcCCccccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC------------------------
Confidence 356777766 5 34455555333334555789999999999999999999865310
Q ss_pred cccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCC--HHHHHHHH
Q 006254 168 KAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLD--EGISNLLL 245 (653)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~--~~~~~~Ll 245 (653)
.....|+.+.. .... .. ++ ..+ +.. -.+|+||||+.++ +..+..|+
T Consensus 73 -------------~~~v~y~~~~~--~~~~-~~--~~-----------~~~-~~~--~dlliiDdi~~~~~~~~~~~~lf 120 (235)
T PRK08084 73 -------------GRAVGYVPLDK--RAWF-VP--EV-----------LEG-MEQ--LSLVCIDNIECIAGDELWEMAIF 120 (235)
T ss_pred -------------CCeEEEEEHHH--Hhhh-hH--HH-----------HHH-hhh--CCEEEEeChhhhcCCHHHHHHHH
Confidence 00112222211 0000 00 00 001 111 1489999999985 33344444
Q ss_pred HHH----HcCceEEeeCCeeEEeecCcEEEEEecCCCC---cccHHHHhhhc--ccccccCCCCHhhHHHHHHHHHHHHh
Q 006254 246 NVL----TEGVNIVEREGISFKHPCKPLLIATYNPEEG---VVREHLLDRIA--INLSADLPMTFEDRVAAVGIATQFQE 316 (653)
Q Consensus 246 ~~l----~~g~~~v~r~G~s~~~p~~~~lIattNp~eg---~l~~aLldRf~--~~v~l~~p~~~~~r~~I~~~~~~~~~ 316 (653)
.++ +.|. ..+|.|++..+. .+.++|.+||. +.+.+. |++.+.+.++++..
T Consensus 121 ~l~n~~~e~g~---------------~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~-~~~~~~~~~~l~~~----- 179 (235)
T PRK08084 121 DLYNRILESGR---------------TRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQ-PLSDEEKLQALQLR----- 179 (235)
T ss_pred HHHHHHHHcCC---------------CeEEEeCCCChHHcCcccHHHHHHHhCCceeeec-CCCHHHHHHHHHHH-----
Confidence 444 4332 235555553332 35699999995 676887 56777777776521
Q ss_pred hhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHH
Q 006254 317 RSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLK 396 (653)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~ 396 (653)
+.. ..+.++++++++|+..+.. +.|..+.++.... .+++.....||.+.++
T Consensus 180 ----------------------a~~--~~~~l~~~v~~~L~~~~~~----d~r~l~~~l~~l~-~~~l~~~~~it~~~~k 230 (235)
T PRK08084 180 ----------------------ARL--RGFELPEDVGRFLLKRLDR----EMRTLFMTLDQLD-RASITAQRKLTIPFVK 230 (235)
T ss_pred ----------------------HHH--cCCCCCHHHHHHHHHhhcC----CHHHHHHHHHHHH-HHHHhcCCCCCHHHHH
Confidence 111 1478999999999887644 5788888887753 4555544569999999
Q ss_pred HHHH
Q 006254 397 KAVE 400 (653)
Q Consensus 397 ~A~~ 400 (653)
+++.
T Consensus 231 ~~l~ 234 (235)
T PRK08084 231 EILK 234 (235)
T ss_pred HHHc
Confidence 9875
No 157
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.38 E-value=9.5e-12 Score=132.27 Aligned_cols=213 Identities=17% Similarity=0.087 Sum_probs=130.0
Q ss_pred cCCCCCCCCceechHHHHHHHHHhcccCCCce-EEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccc
Q 006254 87 YGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL 165 (653)
Q Consensus 87 ~~~~~~~f~~IvGq~~~k~aL~~~av~p~~~g-VLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~ 165 (653)
.+.+|..|++++|++.++..+...+-.....+ +||+||+|+|||++|+++++.+.
T Consensus 13 ~kyrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~------------------------ 68 (316)
T PHA02544 13 QKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVG------------------------ 68 (316)
T ss_pred eccCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC------------------------
Confidence 46778899999999999998855443333334 55589999999999999998763
Q ss_pred cccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccC-CHHHHHHH
Q 006254 166 DEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLL-DEGISNLL 244 (653)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l-~~~~~~~L 244 (653)
.+++.+.... .+ ...+ ...+.. .....+ . .+...+|||||++.+ ..+.++.|
T Consensus 69 ------------------~~~~~i~~~~--~~-~~~i--~~~l~~-~~~~~~-~--~~~~~vliiDe~d~l~~~~~~~~L 121 (316)
T PHA02544 69 ------------------AEVLFVNGSD--CR-IDFV--RNRLTR-FASTVS-L--TGGGKVIIIDEFDRLGLADAQRHL 121 (316)
T ss_pred ------------------ccceEeccCc--cc-HHHH--HHHHHH-HHHhhc-c--cCCCeEEEEECcccccCHHHHHHH
Confidence 1222222221 11 1100 000000 000000 0 134579999999999 67778888
Q ss_pred HHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhh
Q 006254 245 LNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKM 324 (653)
Q Consensus 245 l~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~ 324 (653)
...+++.. .++.+|.++| ....+.++|.+||..+ .+.. ++.+++.+++......
T Consensus 122 ~~~le~~~-------------~~~~~Ilt~n-~~~~l~~~l~sR~~~i-~~~~-p~~~~~~~il~~~~~~---------- 175 (316)
T PHA02544 122 RSFMEAYS-------------KNCSFIITAN-NKNGIIEPLRSRCRVI-DFGV-PTKEEQIEMMKQMIVR---------- 175 (316)
T ss_pred HHHHHhcC-------------CCceEEEEcC-ChhhchHHHHhhceEE-EeCC-CCHHHHHHHHHHHHHH----------
Confidence 88787532 3467888888 5567889999999754 6664 4666666665531111
Q ss_pred hhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHH
Q 006254 325 VEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKA 398 (653)
Q Consensus 325 ~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A 398 (653)
+. .......+.++++++..+++.++. +.|..+..+.. ++ ....++.+++...
T Consensus 176 -----------~~-~~~~~~~~~i~~~al~~l~~~~~~----d~r~~l~~l~~---~~---~~~~i~~~~l~~~ 227 (316)
T PHA02544 176 -----------CK-GILEAEGVEVDMKVLAALVKKNFP----DFRRTINELQR---YA---STGKIDAGILSEV 227 (316)
T ss_pred -----------HH-HHHHhcCCCCCHHHHHHHHHhcCC----CHHHHHHHHHH---HH---ccCCCCHHHHHHh
Confidence 00 011123578899998888876543 46777666542 22 1246777776553
No 158
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=1.3e-11 Score=141.62 Aligned_cols=232 Identities=20% Similarity=0.205 Sum_probs=137.6
Q ss_pred cCCCCCCCCceechHHHHHHHHHhcccCCCce-EEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCC-CCCccccc
Q 006254 87 YGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT-CPDEWEDG 164 (653)
Q Consensus 87 ~~~~~~~f~~IvGq~~~k~aL~~~av~p~~~g-VLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~-~~~~~~~~ 164 (653)
.+.++..|++|+||+.++..|..++.....++ +||+||+|+|||++|+.+++.+. |..+ ++. .+-..|+.
T Consensus 8 ~kyRP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~-------c~~~-~~~~~~c~~c~~ 79 (585)
T PRK14950 8 RKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVN-------CTTN-DPKGRPCGTCEM 79 (585)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc-------CCCC-CCCCCCCccCHH
Confidence 35688899999999999999966555444444 69999999999999999999874 2111 111 11123444
Q ss_pred ccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHH
Q 006254 165 LDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLL 244 (653)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~L 244 (653)
|..... . ....++.+... ...+.-++. .+. ......| ..+...|+||||++.|+.+.++.|
T Consensus 80 c~~i~~---~-------~~~d~~~i~~~----~~~~vd~ir-~ii-~~~~~~p---~~~~~kVvIIDEa~~L~~~a~naL 140 (585)
T PRK14950 80 CRAIAE---G-------SAVDVIEMDAA----SHTSVDDAR-EII-ERVQFRP---ALARYKVYIIDEVHMLSTAAFNAL 140 (585)
T ss_pred HHHHhc---C-------CCCeEEEEecc----ccCCHHHHH-HHH-HHHhhCc---ccCCeEEEEEeChHhCCHHHHHHH
Confidence 433211 0 01223433321 011111111 110 0001111 124567999999999999999999
Q ss_pred HHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhh
Q 006254 245 LNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKM 324 (653)
Q Consensus 245 l~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~ 324 (653)
+..+++-. ...+||.+++ +...+.+.|.+|+..+ .+. +.+..+..+++..
T Consensus 141 Lk~LEepp-------------~~tv~Il~t~-~~~kll~tI~SR~~~i-~f~-~l~~~el~~~L~~-------------- 190 (585)
T PRK14950 141 LKTLEEPP-------------PHAIFILATT-EVHKVPATILSRCQRF-DFH-RHSVADMAAHLRK-------------- 190 (585)
T ss_pred HHHHhcCC-------------CCeEEEEEeC-ChhhhhHHHHhcccee-eCC-CCCHHHHHHHHHH--------------
Confidence 99998743 2345555555 3445667888888654 666 4444433333221
Q ss_pred hhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHH
Q 006254 325 VEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKA 398 (653)
Q Consensus 325 ~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A 398 (653)
+. ...++.++++++++|+.++. . +.|..+..+.. ++.+ +...|+.++|..+
T Consensus 191 -----------~a----~~egl~i~~eal~~La~~s~---G-dlr~al~~Lek---L~~y-~~~~It~e~V~~l 241 (585)
T PRK14950 191 -----------IA----AAEGINLEPGALEAIARAAT---G-SMRDAENLLQQ---LATT-YGGEISLSQVQSL 241 (585)
T ss_pred -----------HH----HHcCCCCCHHHHHHHHHHcC---C-CHHHHHHHHHH---HHHh-cCCCCCHHHHHHH
Confidence 00 11246799999888877652 2 57888877754 3333 3457888887653
No 159
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.37 E-value=1.3e-11 Score=137.21 Aligned_cols=232 Identities=20% Similarity=0.198 Sum_probs=139.5
Q ss_pred CCCCCCCCceechHHHHHHHHHhcccCCC-ceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCC-CCCCCcccccc
Q 006254 88 GRQFFPLAAVVGQDAIKTALLLGAIDREI-GGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANAD-PTCPDEWEDGL 165 (653)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~~~av~p~~-~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~-p~~~~~~~~~~ 165 (653)
+.+|..|++|+||+.++..|.-.+..... +.+||+||+|+|||++|+.+++.+. |. +......|..|
T Consensus 10 kyRP~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~-----------c~~~~~~~~~c~~c 78 (451)
T PRK06305 10 KYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALN-----------CQNPTEDQEPCNQC 78 (451)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhc-----------CCCcccCCCCCccc
Confidence 46788999999999999988655443334 4489999999999999999999874 31 11111123333
Q ss_pred cccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHH
Q 006254 166 DEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLL 245 (653)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll 245 (653)
......... ....|+.+.... ..|.-++..... ...+.+ ..++..|++|||++.++.+.++.|+
T Consensus 79 ~~C~~i~~~-------~~~d~~~i~g~~----~~gid~ir~i~~--~l~~~~---~~~~~kvvIIdead~lt~~~~n~LL 142 (451)
T PRK06305 79 ASCKEISSG-------TSLDVLEIDGAS----HRGIEDIRQINE--TVLFTP---SKSRYKIYIIDEVHMLTKEAFNSLL 142 (451)
T ss_pred HHHHHHhcC-------CCCceEEeeccc----cCCHHHHHHHHH--HHHhhh---hcCCCEEEEEecHHhhCHHHHHHHH
Confidence 221111000 012233332110 112111111100 000111 1245679999999999999999999
Q ss_pred HHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhh
Q 006254 246 NVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMV 325 (653)
Q Consensus 246 ~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~ 325 (653)
..|++-. ..+++|.++| ....+.+.|.+|+..+ .+. +.+.++..+.+...
T Consensus 143 k~lEep~-------------~~~~~Il~t~-~~~kl~~tI~sRc~~v-~f~-~l~~~el~~~L~~~-------------- 192 (451)
T PRK06305 143 KTLEEPP-------------QHVKFFLATT-EIHKIPGTILSRCQKM-HLK-RIPEETIIDKLALI-------------- 192 (451)
T ss_pred HHhhcCC-------------CCceEEEEeC-ChHhcchHHHHhceEE-eCC-CCCHHHHHHHHHHH--------------
Confidence 9999742 2456666666 5567889999999765 776 44555433332210
Q ss_pred hhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHH
Q 006254 326 EEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (653)
Q Consensus 326 ~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~ 399 (653)
. . ..++.+++++++.|+.++. . +.|..+..+.... .+.+ ..|+.++|..++
T Consensus 193 -----------~--~--~eg~~i~~~al~~L~~~s~---g-dlr~a~~~Lekl~---~~~~-~~It~~~V~~l~ 243 (451)
T PRK06305 193 -----------A--K--QEGIETSREALLPIARAAQ---G-SLRDAESLYDYVV---GLFP-KSLDPDSVAKAL 243 (451)
T ss_pred -----------H--H--HcCCCCCHHHHHHHHHHcC---C-CHHHHHHHHHHHH---Hhcc-CCcCHHHHHHHH
Confidence 0 1 1357799999999987762 2 5787777765433 2334 348888887654
No 160
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.37 E-value=1.9e-11 Score=131.94 Aligned_cols=233 Identities=21% Similarity=0.243 Sum_probs=138.5
Q ss_pred CCCCCCCCceechHHHHHHHHHhcccCCCc-eEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccccc
Q 006254 88 GRQFFPLAAVVGQDAIKTALLLGAIDREIG-GIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLD 166 (653)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~~~av~p~~~-gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~ 166 (653)
+.++..|++|+||+.++..|...+...... .+||+||+|+|||++|+.+++.+. |........|..|.
T Consensus 7 ~~rp~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~-----------~~~~~~~~~c~~c~ 75 (355)
T TIGR02397 7 KYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALN-----------CQNGPDGEPCNECE 75 (355)
T ss_pred HhCCCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-----------CCCCCCCCCCCCCH
Confidence 457888999999999999986655444333 479999999999999999999874 22110111222222
Q ss_pred ccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHHH
Q 006254 167 EKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLN 246 (653)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~ 246 (653)
....... .....++.+.... ..+.-++.. +.... ...| ..++..|++|||++.++...++.|+.
T Consensus 76 ~c~~~~~-------~~~~~~~~~~~~~----~~~~~~~~~-l~~~~-~~~p---~~~~~~vviidea~~l~~~~~~~Ll~ 139 (355)
T TIGR02397 76 SCKEINS-------GSSLDVIEIDAAS----NNGVDDIRE-ILDNV-KYAP---SSGKYKVYIIDEVHMLSKSAFNALLK 139 (355)
T ss_pred HHHHHhc-------CCCCCEEEeeccc----cCCHHHHHH-HHHHH-hcCc---ccCCceEEEEeChhhcCHHHHHHHHH
Confidence 2110000 0122344432220 001000111 10000 0011 12345699999999999999999999
Q ss_pred HHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhhh
Q 006254 247 VLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVE 326 (653)
Q Consensus 247 ~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~ 326 (653)
.+++. |..+++|.++| +...+.+.+.+|+.. +.+. |++.++..+++...
T Consensus 140 ~le~~-------------~~~~~lIl~~~-~~~~l~~~l~sr~~~-~~~~-~~~~~~l~~~l~~~--------------- 188 (355)
T TIGR02397 140 TLEEP-------------PEHVVFILATT-EPHKIPATILSRCQR-FDFK-RIPLEDIVERLKKI--------------- 188 (355)
T ss_pred HHhCC-------------ccceeEEEEeC-CHHHHHHHHHhheeE-EEcC-CCCHHHHHHHHHHH---------------
Confidence 99753 23456666666 455677889999854 4776 55666555544311
Q ss_pred hhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHHH
Q 006254 327 EETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (653)
Q Consensus 327 ~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~ 400 (653)
++ ...+.+++++++++++.+ +. +.|..+..+..+.. +.+ ..|+.+||++++.
T Consensus 189 ------------~~--~~g~~i~~~a~~~l~~~~---~g-~~~~a~~~lekl~~---~~~-~~it~~~v~~~~~ 240 (355)
T TIGR02397 189 ------------LD--KEGIKIEDEALELIARAA---DG-SLRDALSLLDQLIS---FGN-GNITYEDVNELLG 240 (355)
T ss_pred ------------HH--HcCCCCCHHHHHHHHHHc---CC-ChHHHHHHHHHHHh---hcC-CCCCHHHHHHHhC
Confidence 01 124678999999888765 22 46777766644333 233 4599999988763
No 161
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=1.9e-11 Score=139.84 Aligned_cols=237 Identities=15% Similarity=0.170 Sum_probs=141.4
Q ss_pred cCCCCCCCCceechHHHHHHHHHhcccCCCce-EEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCC-CC-C-----
Q 006254 87 YGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADP-TC-P----- 158 (653)
Q Consensus 87 ~~~~~~~f~~IvGq~~~k~aL~~~av~p~~~g-VLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p-~~-~----- 158 (653)
.+.+|..|++|+||+.++..|.-++-.....+ +||+||+|||||++|+.+++.+ +|.. .+ +
T Consensus 8 ~kyRP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L-----------~c~~~~~~~~~~~~ 76 (620)
T PRK14954 8 RKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAV-----------NCQRMIDDPVYLQE 76 (620)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHh-----------CCCCcCCccccccc
Confidence 35788999999999999999866554444444 9999999999999999999987 4521 10 0
Q ss_pred -CcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCC
Q 006254 159 -DEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLD 237 (653)
Q Consensus 159 -~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~ 237 (653)
...|..|......... ....|+.+.... ..|.-++.....+- ...| ..+..-|++|||++.|+
T Consensus 77 ~~~~Cg~C~sC~~~~~g-------~~~n~~~~d~~s----~~~vd~Ir~l~e~~--~~~P---~~~~~KVvIIdEad~Lt 140 (620)
T PRK14954 77 VTEPCGECESCRDFDAG-------TSLNISEFDAAS----NNSVDDIRQLRENV--RYGP---QKGRYRVYIIDEVHMLS 140 (620)
T ss_pred cCCCCccCHHHHHHhcc-------CCCCeEEecccc----cCCHHHHHHHHHHH--Hhhh---hcCCCEEEEEeChhhcC
Confidence 1244444332211111 123344443211 11111111111000 0111 12345699999999999
Q ss_pred HHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhh
Q 006254 238 EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQER 317 (653)
Q Consensus 238 ~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~ 317 (653)
.+.++.|+..|++-. ...+||.+++ +...+.+.|.+|+.++ .+. +.+.++....+..
T Consensus 141 ~~a~naLLK~LEePp-------------~~tv~IL~t~-~~~kLl~TI~SRc~~v-ef~-~l~~~ei~~~L~~------- 197 (620)
T PRK14954 141 TAAFNAFLKTLEEPP-------------PHAIFIFATT-ELHKIPATIASRCQRF-NFK-RIPLDEIQSQLQM------- 197 (620)
T ss_pred HHHHHHHHHHHhCCC-------------CCeEEEEEeC-ChhhhhHHHHhhceEE-ecC-CCCHHHHHHHHHH-------
Confidence 999999999999742 2345555554 4467778899998655 776 4444432222211
Q ss_pred hhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHH-cCCCCccHHHHH
Q 006254 318 SNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAAL-EGREKVNVDDLK 396 (653)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal-~gr~~Vt~eDv~ 396 (653)
+.. ...+.++++++++|++.+. . +.|..+..+.....++.- .....|+.++|.
T Consensus 198 ------------------i~~----~egi~I~~eal~~La~~s~---G-dlr~al~eLeKL~~y~~~~~~~~~It~~~V~ 251 (620)
T PRK14954 198 ------------------ICR----AEGIQIDADALQLIARKAQ---G-SMRDAQSILDQVIAFSVGSEAEKVIAYQGVA 251 (620)
T ss_pred ------------------HHH----HcCCCCCHHHHHHHHHHhC---C-CHHHHHHHHHHHHHhccccccCCccCHHHHH
Confidence 111 1246799999999987763 2 578777776543333210 124578888776
Q ss_pred HHH
Q 006254 397 KAV 399 (653)
Q Consensus 397 ~A~ 399 (653)
+.+
T Consensus 252 ~lv 254 (620)
T PRK14954 252 ELL 254 (620)
T ss_pred HHH
Confidence 643
No 162
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.35 E-value=4.9e-12 Score=149.15 Aligned_cols=155 Identities=18% Similarity=0.229 Sum_probs=106.6
Q ss_pred CCCCCCceechHHHHHHHHHhccc-------------CCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCC
Q 006254 90 QFFPLAAVVGQDAIKTALLLGAID-------------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT 156 (653)
Q Consensus 90 ~~~~f~~IvGq~~~k~aL~~~av~-------------p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~ 156 (653)
+.++|++|.|.+..+..+...+.. +...+|||+||||||||++|++|++.+.
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~--------------- 237 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG--------------- 237 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhC---------------
Confidence 567899999999988887332211 1236799999999999999999999763
Q ss_pred CCCcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccc---cCceEEeccc
Q 006254 157 CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEI 233 (653)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~IDEi 233 (653)
.+|+.+......+.+.|.. +.. ...++..+ .+.|||||||
T Consensus 238 ---------------------------~~~i~i~~~~i~~~~~g~~--~~~--------l~~lf~~a~~~~p~il~iDEi 280 (733)
T TIGR01243 238 ---------------------------AYFISINGPEIMSKYYGES--EER--------LREIFKEAEENAPSIIFIDEI 280 (733)
T ss_pred ---------------------------CeEEEEecHHHhcccccHH--HHH--------HHHHHHHHHhcCCcEEEeehh
Confidence 3455544433333344421 000 11122222 3479999999
Q ss_pred ccCC-----------HHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHh--hhcccccccCCCC
Q 006254 234 NLLD-----------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPMT 300 (653)
Q Consensus 234 ~~l~-----------~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLld--Rf~~~v~l~~p~~ 300 (653)
+.+. ..+++.|+..|+.-. ....+++|++|| ....++++|.+ ||+..+.+..| +
T Consensus 281 d~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~-----------~~~~vivI~atn-~~~~ld~al~r~gRfd~~i~i~~P-~ 347 (733)
T TIGR01243 281 DAIAPKREEVTGEVEKRVVAQLLTLMDGLK-----------GRGRVIVIGATN-RPDALDPALRRPGRFDREIVIRVP-D 347 (733)
T ss_pred hhhcccccCCcchHHHHHHHHHHHHhhccc-----------cCCCEEEEeecC-ChhhcCHHHhCchhccEEEEeCCc-C
Confidence 8763 346788888886422 112578999999 56678899987 99999999854 8
Q ss_pred HhhHHHHHH
Q 006254 301 FEDRVAAVG 309 (653)
Q Consensus 301 ~~~r~~I~~ 309 (653)
.++|.+|++
T Consensus 348 ~~~R~~Il~ 356 (733)
T TIGR01243 348 KRARKEILK 356 (733)
T ss_pred HHHHHHHHH
Confidence 888998887
No 163
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1.2e-12 Score=132.24 Aligned_cols=221 Identities=24% Similarity=0.325 Sum_probs=137.5
Q ss_pred CCCCCCCceechHHHHHHHHHhcccCC-------------CceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCC
Q 006254 89 RQFFPLAAVVGQDAIKTALLLGAIDRE-------------IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADP 155 (653)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~~~av~p~-------------~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p 155 (653)
.+.-++.+|-|.+.-++.+..+.--|- ..||+|||+||||||.||+++|+.-
T Consensus 179 aP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqT--------------- 243 (440)
T KOG0726|consen 179 APQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQT--------------- 243 (440)
T ss_pred CchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhccc---------------
Confidence 345578999999987777754433331 3579999999999999999999843
Q ss_pred CCCCcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccc---cCceEEecc
Q 006254 156 TCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDE 232 (653)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~IDE 232 (653)
.+.|. +++|+.=+.+-+..|.+- ..-+|..| ...|+||||
T Consensus 244 ---------------------------SATFl---------RvvGseLiQkylGdGpkl-vRqlF~vA~e~apSIvFiDE 286 (440)
T KOG0726|consen 244 ---------------------------SATFL---------RVVGSELIQKYLGDGPKL-VRELFRVAEEHAPSIVFIDE 286 (440)
T ss_pred ---------------------------chhhh---------hhhhHHHHHHHhccchHH-HHHHHHHHHhcCCceEEeeh
Confidence 23343 445543334444445432 22244333 368999999
Q ss_pred cccCC-----------HHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHh--hhcccccccCCC
Q 006254 233 INLLD-----------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPM 299 (653)
Q Consensus 233 i~~l~-----------~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLld--Rf~~~v~l~~p~ 299 (653)
|+... .++|..+|.++++-. |.. ...++-+|.+|| .-..|+|+|++ |++..|+++.|
T Consensus 287 IdAiGtKRyds~SggerEiQrtmLELLNQld------GFd--srgDvKvimATn-rie~LDPaLiRPGrIDrKIef~~p- 356 (440)
T KOG0726|consen 287 IDAIGTKRYDSNSGGEREIQRTMLELLNQLD------GFD--SRGDVKVIMATN-RIETLDPALIRPGRIDRKIEFPLP- 356 (440)
T ss_pred hhhhccccccCCCccHHHHHHHHHHHHHhcc------Ccc--ccCCeEEEEecc-cccccCHhhcCCCccccccccCCC-
Confidence 98762 478999998887532 221 123678999999 66678899987 99999999865
Q ss_pred CHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHH-HHHHHHHHHhcCCCCcchHHH-HHHH
Q 006254 300 TFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQ-LKYLVMEALRGGCQGHRAELY-AARV 377 (653)
Q Consensus 300 ~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~-l~~l~~~~~~~~i~s~R~~i~-llr~ 377 (653)
|...+..|...... + ..+..++ ++.+... +..+.+ ++|. +.--
T Consensus 357 De~TkkkIf~IHTs--------------------------~-----Mtl~~dVnle~li~~--kddlSG--AdIkAictE 401 (440)
T KOG0726|consen 357 DEKTKKKIFQIHTS--------------------------R-----MTLAEDVNLEELIMT--KDDLSG--ADIKAICTE 401 (440)
T ss_pred chhhhceeEEEeec--------------------------c-----cchhccccHHHHhhc--cccccc--ccHHHHHHH
Confidence 66666666432111 0 0111111 1111111 111111 2232 2333
Q ss_pred HHHHHHHcCCCCccHHHHHHHHHHHcCCC
Q 006254 378 AKCLAALEGREKVNVDDLKKAVELVILPR 406 (653)
Q Consensus 378 Ara~Aal~gr~~Vt~eDv~~A~~lvl~hR 406 (653)
|.-+|.-+.|..|+.+|+..|.+-|+...
T Consensus 402 aGllAlRerRm~vt~~DF~ka~e~V~~~K 430 (440)
T KOG0726|consen 402 AGLLALRERRMKVTMEDFKKAKEKVLYKK 430 (440)
T ss_pred HhHHHHHHHHhhccHHHHHHHHHHHHHhc
Confidence 44456667788999999999999998765
No 164
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.35 E-value=3e-11 Score=132.29 Aligned_cols=242 Identities=19% Similarity=0.178 Sum_probs=146.9
Q ss_pred CCCCceechHHHHHHHHHh---ccc-CCCceEEEECCCCCHHHHHHHHHHhhCCCCe-eeccccccCCCCCCC-cccccc
Q 006254 92 FPLAAVVGQDAIKTALLLG---AID-REIGGIAISGRRGTAKTVMARGLHAILPPIE-VVVGSIANADPTCPD-EWEDGL 165 (653)
Q Consensus 92 ~~f~~IvGq~~~k~aL~~~---av~-p~~~gVLL~GppGTGKT~lArala~~l~~~~-~v~~~~~nc~p~~~~-~~~~~~ 165 (653)
+..+.++|++...+.|... .+. .....++|+||||||||++++.+.+.+.... .+..+++||...... .....+
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i 106 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEI 106 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHH
Confidence 3457799999887777332 232 2335699999999999999999998774322 234556666433210 000000
Q ss_pred cccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCcccccccccc-ccCceEEecccccCC----HHH
Q 006254 166 DEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAE-AHRGVLYIDEINLLD----EGI 240 (653)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~-A~~giL~IDEi~~l~----~~~ 240 (653)
...+. + ...+ ..+.+.+.++..+ . ..+.. ...-||+|||++.+. .+.
T Consensus 107 ~~~l~----~------~~~~----~~~~~~~~~~~~~-------------~-~~l~~~~~~~viviDE~d~l~~~~~~~~ 158 (394)
T PRK00411 107 ARQLF----G------HPPP----SSGLSFDELFDKI-------------A-EYLDERDRVLIVALDDINYLFEKEGNDV 158 (394)
T ss_pred HHHhc----C------CCCC----CCCCCHHHHHHHH-------------H-HHHHhcCCEEEEEECCHhHhhccCCchH
Confidence 00000 0 0000 0000111111100 0 01111 122488999999986 455
Q ss_pred HHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCC--CcccHHHHhhhcc-cccccCCCCHhhHHHHHHHHHHHHhh
Q 006254 241 SNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE--GVVREHLLDRIAI-NLSADLPMTFEDRVAAVGIATQFQER 317 (653)
Q Consensus 241 ~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e--g~l~~aLldRf~~-~v~l~~p~~~~~r~~I~~~~~~~~~~ 317 (653)
+..|+..++... + .++.+|+++|... ..+.+.+..||.. .|.+. |++.++..+|+....
T Consensus 159 l~~l~~~~~~~~------~------~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~-py~~~e~~~il~~r~----- 220 (394)
T PRK00411 159 LYSLLRAHEEYP------G------ARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFP-PYTADEIFDILKDRV----- 220 (394)
T ss_pred HHHHHHhhhccC------C------CeEEEEEEECCcchhhhcCHHHHhcCCcceeecC-CCCHHHHHHHHHHHH-----
Confidence 666666655321 1 1467888888532 3477888888853 44555 788888888766321
Q ss_pred hhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHH
Q 006254 318 SNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKK 397 (653)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~ 397 (653)
+.......+++++++.+++.+..... ..|..+.+++.|..+|.-.|...|+.+||.+
T Consensus 221 ----------------------~~~~~~~~~~~~~l~~i~~~~~~~~G-d~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~ 277 (394)
T PRK00411 221 ----------------------EEGFYPGVVDDEVLDLIADLTAREHG-DARVAIDLLRRAGLIAEREGSRKVTEEDVRK 277 (394)
T ss_pred ----------------------HhhcccCCCCHhHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHcCCCCcCHHHHHH
Confidence 11112335899999999998866433 5799999999999999999999999999999
Q ss_pred HHHHH
Q 006254 398 AVELV 402 (653)
Q Consensus 398 A~~lv 402 (653)
|...+
T Consensus 278 a~~~~ 282 (394)
T PRK00411 278 AYEKS 282 (394)
T ss_pred HHHHH
Confidence 99876
No 165
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=3.5e-11 Score=138.14 Aligned_cols=232 Identities=18% Similarity=0.241 Sum_probs=141.1
Q ss_pred cCCCCCCCCceechHHHHHHHHHhcccCCCce-EEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCC-CCCCccccc
Q 006254 87 YGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADP-TCPDEWEDG 164 (653)
Q Consensus 87 ~~~~~~~f~~IvGq~~~k~aL~~~av~p~~~g-VLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p-~~~~~~~~~ 164 (653)
.+.+|..|++|+||++++..|.-++-.....+ +||+||+|+|||++|+.++..+ +|.. ......|..
T Consensus 9 ~kyRP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l-----------~c~~~~~~~~~Cg~ 77 (614)
T PRK14971 9 RKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTI-----------NCQNLTADGEACNE 77 (614)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHh-----------CCCCCCCCCCCCCc
Confidence 35678899999999999999876655444555 8999999999999999999987 3431 222334544
Q ss_pred ccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHH
Q 006254 165 LDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLL 244 (653)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~L 244 (653)
|......... ....|+.+..... .+.-++...+.. ....| . .+..-|++|||++.|+.+.++.|
T Consensus 78 C~sC~~~~~~-------~~~n~~~ld~~~~----~~vd~Ir~li~~--~~~~P-~--~~~~KVvIIdea~~Ls~~a~naL 141 (614)
T PRK14971 78 CESCVAFNEQ-------RSYNIHELDAASN----NSVDDIRNLIEQ--VRIPP-Q--IGKYKIYIIDEVHMLSQAAFNAF 141 (614)
T ss_pred chHHHHHhcC-------CCCceEEeccccc----CCHHHHHHHHHH--HhhCc-c--cCCcEEEEEECcccCCHHHHHHH
Confidence 4432221111 1234444433210 111122221100 00011 1 23456999999999999999999
Q ss_pred HHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhh
Q 006254 245 LNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKM 324 (653)
Q Consensus 245 l~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~ 324 (653)
+..|++- |...+||.+++ ....+.+.|++|+.++ .+. +.+.++....+..
T Consensus 142 LK~LEep-------------p~~tifIL~tt-~~~kIl~tI~SRc~iv-~f~-~ls~~ei~~~L~~-------------- 191 (614)
T PRK14971 142 LKTLEEP-------------PSYAIFILATT-EKHKILPTILSRCQIF-DFN-RIQVADIVNHLQY-------------- 191 (614)
T ss_pred HHHHhCC-------------CCCeEEEEEeC-CchhchHHHHhhhhee-ecC-CCCHHHHHHHHHH--------------
Confidence 9999973 22456666666 4567889999998775 776 4454433322221
Q ss_pred hhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHH
Q 006254 325 VEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKA 398 (653)
Q Consensus 325 ~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A 398 (653)
+.. ...+.++++++++|++.+ +. +.|..+..+.... .+.|.. |+.++|.+.
T Consensus 192 -----------ia~----~egi~i~~~al~~La~~s---~g-dlr~al~~Lekl~---~y~~~~-It~~~V~~~ 242 (614)
T PRK14971 192 -----------VAS----KEGITAEPEALNVIAQKA---DG-GMRDALSIFDQVV---SFTGGN-ITYKSVIEN 242 (614)
T ss_pred -----------HHH----HcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHH---HhccCC-ccHHHHHHH
Confidence 010 125789999988888765 22 5787777764432 333433 666665443
No 166
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=6.9e-12 Score=140.40 Aligned_cols=230 Identities=23% Similarity=0.328 Sum_probs=145.7
Q ss_pred ceechHHHHHHHH-Hhcc---cCCC-ce-EEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccc
Q 006254 96 AVVGQDAIKTALL-LGAI---DREI-GG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKA 169 (653)
Q Consensus 96 ~IvGq~~~k~aL~-~~av---~p~~-~g-VLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~ 169 (653)
+-.|.+.+|..++ ..+| .+.. |+ ++|+||||+|||+|++.||+.+
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al----------------------------- 374 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL----------------------------- 374 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh-----------------------------
Confidence 4578888888873 2222 2333 33 8899999999999999999988
Q ss_pred cccccccccccccCCCeEeCCCCC--cccceeeecchhhhhccCCccccccccccc------cCceEEecccccCCHH--
Q 006254 170 EYDTAGNLKTQIARSPFVQIPLGV--TEDRLIGSVDVEESVKTGTTVFQPGLLAEA------HRGVLYIDEINLLDEG-- 239 (653)
Q Consensus 170 ~~~~~~~~~~~~~~~~fv~l~~~~--~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A------~~giL~IDEi~~l~~~-- 239 (653)
+..||.++.+- .+.++-|+- --+=| .-||-+-++ .+.+++||||+.++.+
T Consensus 375 -------------~RkfvR~sLGGvrDEAEIRGHR----RTYIG---amPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~r 434 (782)
T COG0466 375 -------------GRKFVRISLGGVRDEAEIRGHR----RTYIG---AMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFR 434 (782)
T ss_pred -------------CCCEEEEecCccccHHHhcccc----ccccc---cCChHHHHHHHHhCCcCCeEEeechhhccCCCC
Confidence 46788876552 222333331 00011 235555433 5679999999999654
Q ss_pred --HHHHHHHHHHcCceEEeeCCeeEEee---cCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHH
Q 006254 240 --ISNLLLNVLTEGVNIVEREGISFKHP---CKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQF 314 (653)
Q Consensus 240 --~~~~Ll~~l~~g~~~v~r~G~s~~~p---~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~ 314 (653)
=..+||.+++-..|.-.++ ....+| ++++||+|.| .-..++.+|+||+.++ .+. -+..++..+|.+..+-
T Consensus 435 GDPaSALLEVLDPEQN~~F~D-hYLev~yDLS~VmFiaTAN-sl~tIP~PLlDRMEiI-~ls-gYt~~EKl~IAk~~Li- 509 (782)
T COG0466 435 GDPASALLEVLDPEQNNTFSD-HYLEVPYDLSKVMFIATAN-SLDTIPAPLLDRMEVI-RLS-GYTEDEKLEIAKRHLI- 509 (782)
T ss_pred CChHHHHHhhcCHhhcCchhh-ccccCccchhheEEEeecC-ccccCChHHhcceeee-eec-CCChHHHHHHHHHhcc-
Confidence 3589999998665442222 111222 3689999999 6667889999999888 888 4899999888764321
Q ss_pred HhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHH-HHHhcCCCCcchHHHHHHHHHHHHH--HcC-CC--
Q 006254 315 QERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVM-EALRGGCQGHRAELYAARVAKCLAA--LEG-RE-- 388 (653)
Q Consensus 315 ~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~-~~~~~~i~s~R~~i~llr~Ara~Aa--l~g-r~-- 388 (653)
...+...---...+.++|+++..|.+ |+.+.|+.++...|. +++|..|. +.+ ..
T Consensus 510 ------------------Pk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR~i~--ki~RK~~~~i~~~~~k~~ 569 (782)
T COG0466 510 ------------------PKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRNLEREIA--KICRKAAKKILLKKEKSI 569 (782)
T ss_pred ------------------hHHHHHcCCCccceeecHHHHHHHHHHHhHhhhhhHHHHHHH--HHHHHHHHHHHhcCcccc
Confidence 11222211112458899999998887 567778866665543 33443332 223 22
Q ss_pred -CccHHHHHHHH
Q 006254 389 -KVNVDDLKKAV 399 (653)
Q Consensus 389 -~Vt~eDv~~A~ 399 (653)
.|+..++.+-+
T Consensus 570 ~~i~~~~l~~yL 581 (782)
T COG0466 570 VKIDEKNLKKYL 581 (782)
T ss_pred eeeCHHHHHHHh
Confidence 36666666543
No 167
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.34 E-value=5.9e-12 Score=149.88 Aligned_cols=210 Identities=17% Similarity=0.179 Sum_probs=132.9
Q ss_pred CCCCCceechHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccccccccc
Q 006254 91 FFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAE 170 (653)
Q Consensus 91 ~~~f~~IvGq~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~ 170 (653)
.-.++.|+|++..++.+...+......+++|+||||||||++|++|+..+....
T Consensus 175 ~~~~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~-------------------------- 228 (821)
T CHL00095 175 DGNLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRD-------------------------- 228 (821)
T ss_pred cCCCCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCC--------------------------
Confidence 345788999999999886656666677899999999999999999999864110
Q ss_pred ccccccccccccCCCeEeCCCCCc--ccceeeecchhhhhccCCcccccccccc---ccCceEEecccccCCH-------
Q 006254 171 YDTAGNLKTQIARSPFVQIPLGVT--EDRLIGSVDVEESVKTGTTVFQPGLLAE---AHRGVLYIDEINLLDE------- 238 (653)
Q Consensus 171 ~~~~~~~~~~~~~~~fv~l~~~~~--~~~l~G~~d~~~~~~~g~~~~~~Gll~~---A~~giL~IDEi~~l~~------- 238 (653)
.+....+.+|+.+..+.. ...+.|.+ +.- . ..++.. ..+.|||||||+.+-.
T Consensus 229 ------vp~~l~~~~i~~l~~~~l~ag~~~~ge~--e~r-------l-~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~ 292 (821)
T CHL00095 229 ------VPDILEDKLVITLDIGLLLAGTKYRGEF--EER-------L-KRIFDEIQENNNIILVIDEVHTLIGAGAAEGA 292 (821)
T ss_pred ------CChhhcCCeEEEeeHHHHhccCCCccHH--HHH-------H-HHHHHHHHhcCCeEEEEecHHHHhcCCCCCCc
Confidence 011112455665544311 11222211 110 0 122322 2346999999987632
Q ss_pred -HHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCC----cccHHHHhhhcccccccCCCCHhhHHHHHHHHHH
Q 006254 239 -GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG----VVREHLLDRIAINLSADLPMTFEDRVAAVGIATQ 313 (653)
Q Consensus 239 -~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg----~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~ 313 (653)
+..+.|..++..|. +.+||+||+++. +.+++|..||..+ .+.. ++.++...|++....
T Consensus 293 ~~~a~lLkp~l~rg~---------------l~~IgaTt~~ey~~~ie~D~aL~rRf~~I-~v~e-p~~~e~~aILr~l~~ 355 (821)
T CHL00095 293 IDAANILKPALARGE---------------LQCIGATTLDEYRKHIEKDPALERRFQPV-YVGE-PSVEETIEILFGLRS 355 (821)
T ss_pred ccHHHHhHHHHhCCC---------------cEEEEeCCHHHHHHHHhcCHHHHhcceEE-ecCC-CCHHHHHHHHHHHHH
Confidence 46788888888775 579999998774 4679999999875 7774 577777777764432
Q ss_pred HHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhc
Q 006254 314 FQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRG 363 (653)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~ 363 (653)
...... . +....+.+..-...+..+.++-.+++.+++.|-+.|...
T Consensus 356 ~~e~~~---~-v~i~deal~~i~~ls~~yi~~r~lPdkaidlld~a~a~~ 401 (821)
T CHL00095 356 RYEKHH---N-LSISDKALEAAAKLSDQYIADRFLPDKAIDLLDEAGSRV 401 (821)
T ss_pred HHHHHc---C-CCCCHHHHHHHHHHhhccCccccCchHHHHHHHHHHHHH
Confidence 211111 1 112233444445555666777778888887777776554
No 168
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.34 E-value=1.8e-11 Score=145.50 Aligned_cols=213 Identities=21% Similarity=0.250 Sum_probs=135.9
Q ss_pred CceechHHHHHHHHHhc-------ccCC--CceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccc
Q 006254 95 AAVVGQDAIKTALLLGA-------IDRE--IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL 165 (653)
Q Consensus 95 ~~IvGq~~~k~aL~~~a-------v~p~--~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~ 165 (653)
..|+||+.++.++.-++ .+|. .+.+||.||+|||||.+|++|+..+-. +
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~----------~------------ 623 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYG----------G------------ 623 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhC----------C------------
Confidence 46999999888873322 2332 234899999999999999999998731 0
Q ss_pred cccccccccccccccccCCCeEeCCC-----CCcccceeeecchhhhhccCCccccccccccc----cCceEEecccccC
Q 006254 166 DEKAEYDTAGNLKTQIARSPFVQIPL-----GVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA----HRGVLYIDEINLL 236 (653)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~fv~l~~-----~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A----~~giL~IDEi~~l 236 (653)
...|+.+.. ..+.++|+|..-- +-|. .+.|.|..+ ..+||+||||+.+
T Consensus 624 -----------------~~~~~~~dmse~~~~~~~~~l~g~~~g----yvg~--~~~g~L~~~v~~~p~svvllDEieka 680 (852)
T TIGR03345 624 -----------------EQNLITINMSEFQEAHTVSRLKGSPPG----YVGY--GEGGVLTEAVRRKPYSVVLLDEVEKA 680 (852)
T ss_pred -----------------CcceEEEeHHHhhhhhhhccccCCCCC----cccc--cccchHHHHHHhCCCcEEEEechhhc
Confidence 112222221 1222344443100 0011 112333332 5689999999999
Q ss_pred CHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCC----------------------------CcccHHHHhh
Q 006254 237 DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE----------------------------GVVREHLLDR 288 (653)
Q Consensus 237 ~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e----------------------------g~l~~aLldR 288 (653)
++++++.|++++++|.++ ...|..+... +.++|.|+|... ..|+|+|++|
T Consensus 681 ~~~v~~~Llq~ld~g~l~-d~~Gr~vd~~-n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnR 758 (852)
T TIGR03345 681 HPDVLELFYQVFDKGVME-DGEGREIDFK-NTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGR 758 (852)
T ss_pred CHHHHHHHHHHhhcceee-cCCCcEEecc-ccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhcc
Confidence 999999999999999864 3345555544 578999999511 1277999999
Q ss_pred hcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCc
Q 006254 289 IAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGH 368 (653)
Q Consensus 289 f~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~ 368 (653)
++ +|.+. |.+.+...+|+.+...- +..++. ...--.+.++++++++|++.+..... +.
T Consensus 759 i~-iI~F~-pLs~e~l~~Iv~~~L~~-----------------l~~rl~--~~~gi~l~i~d~a~~~La~~g~~~~~-GA 816 (852)
T TIGR03345 759 MT-VIPYL-PLDDDVLAAIVRLKLDR-----------------IARRLK--ENHGAELVYSEALVEHIVARCTEVES-GA 816 (852)
T ss_pred ee-EEEeC-CCCHHHHHHHHHHHHHH-----------------HHHHHH--HhcCceEEECHHHHHHHHHHcCCCCC-Ch
Confidence 98 44555 88999888887754321 111211 11122478999999999998765322 56
Q ss_pred chHHHHHH
Q 006254 369 RAELYAAR 376 (653)
Q Consensus 369 R~~i~llr 376 (653)
|....+++
T Consensus 817 R~L~r~Ie 824 (852)
T TIGR03345 817 RNIDAILN 824 (852)
T ss_pred HHHHHHHH
Confidence 76666553
No 169
>PRK06893 DNA replication initiation factor; Validated
Probab=99.33 E-value=2.4e-11 Score=123.56 Aligned_cols=210 Identities=13% Similarity=0.167 Sum_probs=124.9
Q ss_pred CCCCCCCceechHHHHHH--HHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccccc
Q 006254 89 RQFFPLAAVVGQDAIKTA--LLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLD 166 (653)
Q Consensus 89 ~~~~~f~~IvGq~~~k~a--L~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~ 166 (653)
.+..+|++++|++....+ +...........++|+||||||||+|++++++.+-..
T Consensus 10 ~~~~~fd~f~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~----------------------- 66 (229)
T PRK06893 10 IDDETLDNFYADNNLLLLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLN----------------------- 66 (229)
T ss_pred CCcccccccccCChHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc-----------------------
Confidence 346789999977654322 2221222223347999999999999999999875210
Q ss_pred ccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCC--HHHHHHH
Q 006254 167 EKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLD--EGISNLL 244 (653)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~--~~~~~~L 244 (653)
..+..|+.+. ... .+. ..+ ..+ + .+..+|+||||+.+. ...+..|
T Consensus 67 --------------~~~~~y~~~~--~~~--~~~-----~~~-------~~~-~--~~~dlLilDDi~~~~~~~~~~~~l 113 (229)
T PRK06893 67 --------------QRTAIYIPLS--KSQ--YFS-----PAV-------LEN-L--EQQDLVCLDDLQAVIGNEEWELAI 113 (229)
T ss_pred --------------CCCeEEeeHH--Hhh--hhh-----HHH-------Hhh-c--ccCCEEEEeChhhhcCChHHHHHH
Confidence 0122233221 100 000 000 001 1 123599999999874 3445566
Q ss_pred HHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCc---ccHHHHhhhc--ccccccCCCCHhhHHHHHHHHHHHHhhhh
Q 006254 245 LNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGV---VREHLLDRIA--INLSADLPMTFEDRVAAVGIATQFQERSN 319 (653)
Q Consensus 245 l~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~---l~~aLldRf~--~~v~l~~p~~~~~r~~I~~~~~~~~~~~~ 319 (653)
+..++... + .| ..++|.|+|..+.. ..+.|.+||. ..+.+. +++.+.+.+|+++...
T Consensus 114 ~~l~n~~~---~-~~-------~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~-~pd~e~~~~iL~~~a~------ 175 (229)
T PRK06893 114 FDLFNRIK---E-QG-------KTLLLISADCSPHALSIKLPDLASRLTWGEIYQLN-DLTDEQKIIVLQRNAY------ 175 (229)
T ss_pred HHHHHHHH---H-cC-------CcEEEEeCCCChHHccccchhHHHHHhcCCeeeCC-CCCHHHHHHHHHHHHH------
Confidence 66665432 0 01 12344555534433 3389999885 566787 6688888888763211
Q ss_pred HHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHH
Q 006254 320 EVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (653)
Q Consensus 320 ~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~ 399 (653)
...+.++++++++|++.+.. +.|..+.++...- .+.+.....||.+.+++++
T Consensus 176 -----------------------~~~l~l~~~v~~~L~~~~~~----d~r~l~~~l~~l~-~~~~~~~~~it~~~v~~~L 227 (229)
T PRK06893 176 -----------------------QRGIELSDEVANFLLKRLDR----DMHTLFDALDLLD-KASLQAQRKLTIPFVKEIL 227 (229)
T ss_pred -----------------------HcCCCCCHHHHHHHHHhccC----CHHHHHHHHHHHH-HHHHhcCCCCCHHHHHHHh
Confidence 12578999999999876543 5788888877653 3445433379999999886
Q ss_pred H
Q 006254 400 E 400 (653)
Q Consensus 400 ~ 400 (653)
.
T Consensus 228 ~ 228 (229)
T PRK06893 228 G 228 (229)
T ss_pred c
Confidence 4
No 170
>PRK04195 replication factor C large subunit; Provisional
Probab=99.33 E-value=1.8e-11 Score=137.68 Aligned_cols=208 Identities=17% Similarity=0.182 Sum_probs=127.6
Q ss_pred cCCCCCCCCceechHHHHHHHHHhcc---cC-CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccc
Q 006254 87 YGRQFFPLAAVVGQDAIKTALLLGAI---DR-EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWE 162 (653)
Q Consensus 87 ~~~~~~~f~~IvGq~~~k~aL~~~av---~p-~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~ 162 (653)
.+.+|..|++|+|++.++..|.-.+- .. ...++||+||||||||++|++|++.+.
T Consensus 6 eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--------------------- 64 (482)
T PRK04195 6 EKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--------------------- 64 (482)
T ss_pred hhcCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC---------------------
Confidence 35678899999999999988843221 11 146799999999999999999999874
Q ss_pred ccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCH----
Q 006254 163 DGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDE---- 238 (653)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~---- 238 (653)
..++.+..+.. +-.. .+...+... .....++ .....+|+|||++.+..
T Consensus 65 ---------------------~~~ielnasd~--r~~~--~i~~~i~~~--~~~~sl~-~~~~kvIiIDEaD~L~~~~d~ 116 (482)
T PRK04195 65 ---------------------WEVIELNASDQ--RTAD--VIERVAGEA--ATSGSLF-GARRKLILLDEVDGIHGNEDR 116 (482)
T ss_pred ---------------------CCEEEEccccc--ccHH--HHHHHHHHh--hccCccc-CCCCeEEEEecCcccccccch
Confidence 22233322110 0000 000000000 0000111 02356999999999976
Q ss_pred HHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccH-HHHhhhcccccccCCCCHhhHHHHHHHHHHHHhh
Q 006254 239 GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVRE-HLLDRIAINLSADLPMTFEDRVAAVGIATQFQER 317 (653)
Q Consensus 239 ~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~-aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~ 317 (653)
..++.|+..++... ..+|.++| +...+.. .|.+|+ ..|.+. +++.++...++...
T Consensus 117 ~~~~aL~~~l~~~~---------------~~iIli~n-~~~~~~~k~Lrsr~-~~I~f~-~~~~~~i~~~L~~i------ 172 (482)
T PRK04195 117 GGARAILELIKKAK---------------QPIILTAN-DPYDPSLRELRNAC-LMIEFK-RLSTRSIVPVLKRI------ 172 (482)
T ss_pred hHHHHHHHHHHcCC---------------CCEEEecc-CccccchhhHhccc-eEEEec-CCCHHHHHHHHHHH------
Confidence 66888999887542 23555667 4445555 566665 445777 45655544444321
Q ss_pred hhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHH
Q 006254 318 SNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKK 397 (653)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~ 397 (653)
.. ...+.+++++++.|++.+ +. ..|..++.+.. ...|...|+.+++..
T Consensus 173 -------------------~~----~egi~i~~eaL~~Ia~~s---~G-DlR~ain~Lq~-----~a~~~~~it~~~v~~ 220 (482)
T PRK04195 173 -------------------CR----KEGIECDDEALKEIAERS---GG-DLRSAINDLQA-----IAEGYGKLTLEDVKT 220 (482)
T ss_pred -------------------HH----HcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHH-----HhcCCCCCcHHHHHH
Confidence 11 125679999999998765 23 58888887754 224667899999876
Q ss_pred HH
Q 006254 398 AV 399 (653)
Q Consensus 398 A~ 399 (653)
..
T Consensus 221 ~~ 222 (482)
T PRK04195 221 LG 222 (482)
T ss_pred hh
Confidence 54
No 171
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.33 E-value=1.3e-11 Score=147.08 Aligned_cols=211 Identities=23% Similarity=0.271 Sum_probs=133.2
Q ss_pred CceechHHHHHHHHHhcc-------cCC--CceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccc
Q 006254 95 AAVVGQDAIKTALLLGAI-------DRE--IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL 165 (653)
Q Consensus 95 ~~IvGq~~~k~aL~~~av-------~p~--~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~ 165 (653)
..|+||+.++..+..+.. +|. .+.+||.||+|||||++|++|++.+-. +
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~-----------~----------- 566 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFG-----------S----------- 566 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcC-----------C-----------
Confidence 568999999988843322 232 245899999999999999999998731 0
Q ss_pred cccccccccccccccccCCCeEeCCCC-----CcccceeeecchhhhhccCCcc-ccccccc----cccCceEEeccccc
Q 006254 166 DEKAEYDTAGNLKTQIARSPFVQIPLG-----VTEDRLIGSVDVEESVKTGTTV-FQPGLLA----EAHRGVLYIDEINL 235 (653)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~fv~l~~~-----~~~~~l~G~~d~~~~~~~g~~~-~~~Gll~----~A~~giL~IDEi~~ 235 (653)
..+++.+..+ .+..+++|.-. |... .+.|.|. ....+||+||||+.
T Consensus 567 -----------------~~~~~~~d~s~~~~~~~~~~l~g~~~-------gyvg~~~~~~l~~~~~~~p~~VvllDeiek 622 (821)
T CHL00095 567 -----------------EDAMIRLDMSEYMEKHTVSKLIGSPP-------GYVGYNEGGQLTEAVRKKPYTVVLFDEIEK 622 (821)
T ss_pred -----------------ccceEEEEchhccccccHHHhcCCCC-------cccCcCccchHHHHHHhCCCeEEEECChhh
Confidence 1112221111 11223333210 0000 0112222 22347999999999
Q ss_pred CCHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCC----------C--------------------------
Q 006254 236 LDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE----------G-------------------------- 279 (653)
Q Consensus 236 l~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e----------g-------------------------- 279 (653)
+++++++.|++++++|.++.. .|..+.+. +.++|.|+|... |
T Consensus 623 a~~~v~~~Llq~le~g~~~d~-~g~~v~~~-~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (821)
T CHL00095 623 AHPDIFNLLLQILDDGRLTDS-KGRTIDFK-NTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQ 700 (821)
T ss_pred CCHHHHHHHHHHhccCceecC-CCcEEecC-ceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHH
Confidence 999999999999999986543 35555553 688999999521 0
Q ss_pred cccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHH
Q 006254 280 VVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVME 359 (653)
Q Consensus 280 ~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~ 359 (653)
.|+|.|+.|++.+|.+. |.+.+...+|+++...- +..++ ...--.+.++++++++|++.
T Consensus 701 ~f~peflnRid~ii~F~-pL~~~~l~~Iv~~~l~~-----------------l~~rl---~~~~i~l~~~~~~~~~La~~ 759 (821)
T CHL00095 701 FFRPEFLNRLDEIIVFR-QLTKNDVWEIAEIMLKN-----------------LFKRL---NEQGIQLEVTERIKTLLIEE 759 (821)
T ss_pred hcCHHHhccCCeEEEeC-CCCHHHHHHHHHHHHHH-----------------HHHHH---HHCCcEEEECHHHHHHHHHh
Confidence 15688999998877776 88999888888754321 11222 12223478999999999997
Q ss_pred HHhcCCCCcchHHHHH
Q 006254 360 ALRGGCQGHRAELYAA 375 (653)
Q Consensus 360 ~~~~~i~s~R~~i~ll 375 (653)
+.... .|.|..-.++
T Consensus 760 ~~~~~-~GAR~l~r~i 774 (821)
T CHL00095 760 GYNPL-YGARPLRRAI 774 (821)
T ss_pred cCCCC-CChhhHHHHH
Confidence 65433 2566544443
No 172
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.32 E-value=1.4e-11 Score=134.26 Aligned_cols=161 Identities=20% Similarity=0.205 Sum_probs=109.3
Q ss_pred CCceechHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccccccc
Q 006254 94 LAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDT 173 (653)
Q Consensus 94 f~~IvGq~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~~~ 173 (653)
++++++.+.....+..++. ..++|+|+|+||||||++|+.++..+..-..
T Consensus 174 l~d~~i~e~~le~l~~~L~--~~~~iil~GppGtGKT~lA~~la~~l~~~~~---------------------------- 223 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT--IKKNIILQGPPGVGKTFVARRLAYLLTGEKA---------------------------- 223 (459)
T ss_pred hhcccCCHHHHHHHHHHHh--cCCCEEEECCCCCCHHHHHHHHHHHhcCCcc----------------------------
Confidence 6677888877777766554 4688999999999999999999998741000
Q ss_pred cccccccccCCCeEeCCCCCcccceeeecchhhhhccCCcccccccc----ccc-----cCceEEecccccCCHH-HHHH
Q 006254 174 AGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLL----AEA-----HRGVLYIDEINLLDEG-ISNL 243 (653)
Q Consensus 174 ~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll----~~A-----~~giL~IDEi~~l~~~-~~~~ 243 (653)
.....++..+...+...+++++... .....+.+|.+ ..| ++.+|||||||+.+.+ +...
T Consensus 224 -------~~~v~~VtFHpsySYeDFI~G~rP~----~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGe 292 (459)
T PRK11331 224 -------PQRVNMVQFHQSYSYEDFIQGYRPN----GVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGE 292 (459)
T ss_pred -------cceeeEEeecccccHHHHhcccCCC----CCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhh
Confidence 0123345566666666666544221 11234556654 122 3579999999999855 5778
Q ss_pred HHHHHHcCc------eE--E-eeCCeeEEeecCcEEEEEecCCCC---cccHHHHhhhccccccc
Q 006254 244 LLNVLTEGV------NI--V-EREGISFKHPCKPLLIATYNPEEG---VVREHLLDRIAINLSAD 296 (653)
Q Consensus 244 Ll~~l~~g~------~~--v-~r~G~s~~~p~~~~lIattNp~eg---~l~~aLldRf~~~v~l~ 296 (653)
|+.+|+.+. +. + +.++..+..|.++.||||||..+. .++.+|++||..+ ++.
T Consensus 293 l~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF~fi-~i~ 356 (459)
T PRK11331 293 VMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFSFI-DIE 356 (459)
T ss_pred hhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchhhccHHHHhhhheE-Eec
Confidence 888887531 11 1 122345778999999999997653 5899999999876 776
No 173
>PRK06620 hypothetical protein; Validated
Probab=99.31 E-value=8.8e-11 Score=118.09 Aligned_cols=123 Identities=15% Similarity=0.153 Sum_probs=81.8
Q ss_pred ceEEecccccCCHHHHHHHHHH-HHcCceEEeeCCeeEEeecCcEEEEEecC-CCCcccHHHHhhhc--ccccccCCCCH
Q 006254 226 GVLYIDEINLLDEGISNLLLNV-LTEGVNIVEREGISFKHPCKPLLIATYNP-EEGVVREHLLDRIA--INLSADLPMTF 301 (653)
Q Consensus 226 giL~IDEi~~l~~~~~~~Ll~~-l~~g~~~v~r~G~s~~~p~~~~lIattNp-~eg~l~~aLldRf~--~~v~l~~p~~~ 301 (653)
.+|+||||+.+....+-.++.. .+.|. .+||+++.+ .+-.+ ++|++||. +.+.+. |++.
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~~~e~g~---------------~ilits~~~p~~l~l-~~L~SRl~~gl~~~l~-~pd~ 149 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNIINEKQK---------------YLLLTSSDKSRNFTL-PDLSSRIKSVLSILLN-SPDD 149 (214)
T ss_pred CEEEEeccccchHHHHHHHHHHHHhcCC---------------EEEEEcCCCccccch-HHHHHHHhCCceEeeC-CCCH
Confidence 5899999998764333333332 34443 355555543 33346 99999996 345777 5577
Q ss_pred hhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH
Q 006254 302 EDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCL 381 (653)
Q Consensus 302 ~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~ 381 (653)
+.+..++.+.. .. ..+.++++++++|++.+.. +.|..+.++....+.
T Consensus 150 ~~~~~~l~k~~---------------------------~~--~~l~l~~ev~~~L~~~~~~----d~r~l~~~l~~l~~~ 196 (214)
T PRK06620 150 ELIKILIFKHF---------------------------SI--SSVTISRQIIDFLLVNLPR----EYSKIIEILENINYF 196 (214)
T ss_pred HHHHHHHHHHH---------------------------HH--cCCCCCHHHHHHHHHHccC----CHHHHHHHHHHHHHH
Confidence 77777665321 11 2478999999999887643 578888888876655
Q ss_pred HHHcCCCCccHHHHHHHH
Q 006254 382 AALEGREKVNVDDLKKAV 399 (653)
Q Consensus 382 Aal~gr~~Vt~eDv~~A~ 399 (653)
+...+ ..||.+.+++++
T Consensus 197 ~~~~~-~~it~~~~~~~l 213 (214)
T PRK06620 197 ALISK-RKITISLVKEVL 213 (214)
T ss_pred HHHcC-CCCCHHHHHHHh
Confidence 55555 479999998875
No 174
>PRK08727 hypothetical protein; Validated
Probab=99.30 E-value=4.3e-11 Score=121.99 Aligned_cols=207 Identities=16% Similarity=0.175 Sum_probs=129.5
Q ss_pred CCCCCceechH-HHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccc
Q 006254 91 FFPLAAVVGQD-AIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKA 169 (653)
Q Consensus 91 ~~~f~~IvGq~-~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~ 169 (653)
.++|+.+++.. .....+...+.......++|+|++|||||+++++++..+..
T Consensus 15 ~~~f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~--------------------------- 67 (233)
T PRK08727 15 DQRFDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQ--------------------------- 67 (233)
T ss_pred cCChhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHH---------------------------
Confidence 45677766544 33333222223333456999999999999999999886531
Q ss_pred cccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCC--HHHHHHHHHH
Q 006254 170 EYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLD--EGISNLLLNV 247 (653)
Q Consensus 170 ~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~--~~~~~~Ll~~ 247 (653)
.....+.++.. ++.+.+ ...+ . .+ .+..+|+||||+.+. +..+..|++.
T Consensus 68 ------------~~~~~~y~~~~----~~~~~~--~~~~--------~-~l--~~~dlLiIDDi~~l~~~~~~~~~lf~l 118 (233)
T PRK08727 68 ------------AGRSSAYLPLQ----AAAGRL--RDAL--------E-AL--EGRSLVALDGLESIAGQREDEVALFDF 118 (233)
T ss_pred ------------cCCcEEEEeHH----HhhhhH--HHHH--------H-HH--hcCCEEEEeCcccccCChHHHHHHHHH
Confidence 01122222211 111111 0000 0 01 123489999999885 4556677777
Q ss_pred HHcCceEEeeCCeeEEeecCcEEEEEecCCCC---cccHHHHhhh--cccccccCCCCHhhHHHHHHHHHHHHhhhhHHh
Q 006254 248 LTEGVNIVEREGISFKHPCKPLLIATYNPEEG---VVREHLLDRI--AINLSADLPMTFEDRVAAVGIATQFQERSNEVF 322 (653)
Q Consensus 248 l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg---~l~~aLldRf--~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~ 322 (653)
++.... ....+|.|+|..+. .+.++|.+|| ++.+.++ |++.+.+.+|++...
T Consensus 119 ~n~~~~------------~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~-~~~~e~~~~iL~~~a---------- 175 (233)
T PRK08727 119 HNRARA------------AGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLP-VLDDVARAAVLRERA---------- 175 (233)
T ss_pred HHHHHH------------cCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEec-CCCHHHHHHHHHHHH----------
Confidence 765321 02247777774443 3569999998 6666777 668888888876321
Q ss_pred hhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHHH
Q 006254 323 KMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (653)
Q Consensus 323 ~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~ 400 (653)
.. ..+.++++++++|++.+. .+.|..+.++...-..+...++ .||.+.+++++.
T Consensus 176 -----------------~~--~~l~l~~e~~~~La~~~~----rd~r~~l~~L~~l~~~~~~~~~-~it~~~~~~~l~ 229 (233)
T PRK08727 176 -----------------QR--RGLALDEAAIDWLLTHGE----RELAGLVALLDRLDRESLAAKR-RVTVPFLRRVLE 229 (233)
T ss_pred -----------------HH--cCCCCCHHHHHHHHHhCC----CCHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHh
Confidence 11 257899999999988754 2588998888877655655565 799999998875
No 175
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.30 E-value=1.7e-11 Score=146.08 Aligned_cols=214 Identities=17% Similarity=0.188 Sum_probs=137.0
Q ss_pred CCCCCCCceechHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccccccc
Q 006254 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (653)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~ 168 (653)
.++-.++.|+|+++..+.++..+......+++|+||||||||++|++|+..+..-
T Consensus 172 ~r~~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~------------------------- 226 (857)
T PRK10865 172 AEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIING------------------------- 226 (857)
T ss_pred HhcCCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcC-------------------------
Confidence 3456788999999988877655555567789999999999999999999987421
Q ss_pred ccccccccccccccCCCeEeCCCCCcc--cceeeecchhhhhccCCcccccccccc---c-cCceEEecccccCCH----
Q 006254 169 AEYDTAGNLKTQIARSPFVQIPLGVTE--DRLIGSVDVEESVKTGTTVFQPGLLAE---A-HRGVLYIDEINLLDE---- 238 (653)
Q Consensus 169 ~~~~~~~~~~~~~~~~~fv~l~~~~~~--~~l~G~~d~~~~~~~g~~~~~~Gll~~---A-~~giL~IDEi~~l~~---- 238 (653)
..+....+.+++.+..+... ..+.|.+ +..+ ..++.. . .+.|||||||+.+..
T Consensus 227 -------~vp~~l~~~~~~~l~l~~l~ag~~~~g~~--e~~l--------k~~~~~~~~~~~~~ILfIDEih~l~~~~~~ 289 (857)
T PRK10865 227 -------EVPEGLKGRRVLALDMGALVAGAKYRGEF--EERL--------KGVLNDLAKQEGNVILFIDELHTMVGAGKA 289 (857)
T ss_pred -------CCchhhCCCEEEEEehhhhhhccchhhhh--HHHH--------HHHHHHHHHcCCCeEEEEecHHHhccCCCC
Confidence 00011124455555443311 2222321 1111 112221 1 245999999999853
Q ss_pred ----HHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCC----cccHHHHhhhcccccccCCCCHhhHHHHHHH
Q 006254 239 ----GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG----VVREHLLDRIAINLSADLPMTFEDRVAAVGI 310 (653)
Q Consensus 239 ----~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg----~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~ 310 (653)
+.++.|..+++.|. +.+||+||+++. +++++|.+||..+ .+..| +.+++..|++-
T Consensus 290 ~~~~d~~~~lkp~l~~g~---------------l~~IgaTt~~e~r~~~~~d~al~rRf~~i-~v~eP-~~~~~~~iL~~ 352 (857)
T PRK10865 290 DGAMDAGNMLKPALARGE---------------LHCVGATTLDEYRQYIEKDAALERRFQKV-FVAEP-SVEDTIAILRG 352 (857)
T ss_pred ccchhHHHHhcchhhcCC---------------CeEEEcCCCHHHHHHhhhcHHHHhhCCEE-EeCCC-CHHHHHHHHHH
Confidence 36788888888775 689999998885 5889999999864 77755 77888888763
Q ss_pred HHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCC
Q 006254 311 ATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGC 365 (653)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i 365 (653)
.... ...+. .+....+.+...+..+..+..+-.+++.++..+-..|....+
T Consensus 353 l~~~---~e~~~-~v~~~d~a~~~a~~ls~ry~~~~~~pdkAi~LiD~aaa~~rl 403 (857)
T PRK10865 353 LKER---YELHH-HVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRM 403 (857)
T ss_pred Hhhh---hccCC-CCCcCHHHHHHHHHHhhccccCCCCChHHHHHHHHHhccccc
Confidence 3221 11111 112223334444445555667888999999988777765543
No 176
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.29 E-value=1.2e-11 Score=147.64 Aligned_cols=211 Identities=20% Similarity=0.215 Sum_probs=133.7
Q ss_pred CCCCCCceechHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccc
Q 006254 90 QFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKA 169 (653)
Q Consensus 90 ~~~~f~~IvGq~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~ 169 (653)
++-.++.++|+++..+.+...+......+++|+||||||||++|++|+..+..-.
T Consensus 168 ~~~~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~------------------------- 222 (852)
T TIGR03346 168 REGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGD------------------------- 222 (852)
T ss_pred hCCCCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccC-------------------------
Confidence 4557889999999888887656666778899999999999999999999874200
Q ss_pred cccccccccccccCCCeEeCCCCCcc--cceeeecchhhhhccCCccccccccccc----cCceEEecccccCCH-----
Q 006254 170 EYDTAGNLKTQIARSPFVQIPLGVTE--DRLIGSVDVEESVKTGTTVFQPGLLAEA----HRGVLYIDEINLLDE----- 238 (653)
Q Consensus 170 ~~~~~~~~~~~~~~~~fv~l~~~~~~--~~l~G~~d~~~~~~~g~~~~~~Gll~~A----~~giL~IDEi~~l~~----- 238 (653)
.+....+.+++.+..+... ..+.|.. ++.+ ..++... .+.|||||||+.+..
T Consensus 223 -------~p~~l~~~~~~~l~~~~l~a~~~~~g~~--e~~l--------~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~ 285 (852)
T TIGR03346 223 -------VPESLKNKRLLALDMGALIAGAKYRGEF--EERL--------KAVLNEVTKSEGQIILFIDELHTLVGAGKAE 285 (852)
T ss_pred -------CchhhcCCeEEEeeHHHHhhcchhhhhH--HHHH--------HHHHHHHHhcCCCeEEEeccHHHhhcCCCCc
Confidence 0000123445544432211 1222211 1111 1122221 246999999998842
Q ss_pred ---HHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCC----cccHHHHhhhcccccccCCCCHhhHHHHHHHH
Q 006254 239 ---GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG----VVREHLLDRIAINLSADLPMTFEDRVAAVGIA 311 (653)
Q Consensus 239 ---~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg----~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~ 311 (653)
+.++.|...++.|. +.+||+||+++. +++++|.+||..+ .+..| +.+++..|++..
T Consensus 286 ~~~d~~~~Lk~~l~~g~---------------i~~IgaTt~~e~r~~~~~d~al~rRf~~i-~v~~p-~~~~~~~iL~~~ 348 (852)
T TIGR03346 286 GAMDAGNMLKPALARGE---------------LHCIGATTLDEYRKYIEKDAALERRFQPV-FVDEP-TVEDTISILRGL 348 (852)
T ss_pred chhHHHHHhchhhhcCc---------------eEEEEeCcHHHHHHHhhcCHHHHhcCCEE-EeCCC-CHHHHHHHHHHH
Confidence 45677777776664 579999998764 5789999999864 78855 788888887643
Q ss_pred HHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhc
Q 006254 312 TQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRG 363 (653)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~ 363 (653)
...... ...+......+...+..+..+..+-.++|.+++.|-+.|...
T Consensus 349 ~~~~e~----~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAidlld~a~a~~ 396 (852)
T TIGR03346 349 KERYEV----HHGVRITDPAIVAAATLSHRYITDRFLPDKAIDLIDEAAARI 396 (852)
T ss_pred HHHhcc----ccCCCCCHHHHHHHHHhccccccccCCchHHHHHHHHHHHHH
Confidence 222111 111122234455555666667777778888887777776554
No 177
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=1.4e-11 Score=136.93 Aligned_cols=154 Identities=19% Similarity=0.227 Sum_probs=114.4
Q ss_pred CCCCCceechHHHHHHHHHhcccCC-------------CceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCC
Q 006254 91 FFPLAAVVGQDAIKTALLLGAIDRE-------------IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTC 157 (653)
Q Consensus 91 ~~~f~~IvGq~~~k~aL~~~av~p~-------------~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~ 157 (653)
...|.+|-|..++|.+|.-....|. ..||||+||||||||.||.+++...
T Consensus 663 gi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~----------------- 725 (952)
T KOG0735|consen 663 GIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS----------------- 725 (952)
T ss_pred CCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC-----------------
Confidence 4679999999999999954444442 4679999999999999999999854
Q ss_pred CCcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCcccccccccc---ccCceEEecccc
Q 006254 158 PDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAE---AHRGVLYIDEIN 234 (653)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~---A~~giL~IDEi~ 234 (653)
+..|+.+.....-++++|.- |.+ ...+|.+ |.++|||+||++
T Consensus 726 -------------------------~~~fisvKGPElL~KyIGaS--Eq~--------vR~lF~rA~~a~PCiLFFDEfd 770 (952)
T KOG0735|consen 726 -------------------------NLRFISVKGPELLSKYIGAS--EQN--------VRDLFERAQSAKPCILFFDEFD 770 (952)
T ss_pred -------------------------CeeEEEecCHHHHHHHhccc--HHH--------HHHHHHHhhccCCeEEEecccc
Confidence 56778776666666777732 111 1223433 467999999999
Q ss_pred cCC-----------HHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHh--hhcccccccCCCCH
Q 006254 235 LLD-----------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPMTF 301 (653)
Q Consensus 235 ~l~-----------~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLld--Rf~~~v~l~~p~~~ 301 (653)
.+. +.++|.||.-|+--. |. ..+.++|+|. .+.-++|+|++ ||+..|..+. ++.
T Consensus 771 SiAPkRGhDsTGVTDRVVNQlLTelDG~E------gl-----~GV~i~aaTs-RpdliDpALLRpGRlD~~v~C~~-P~~ 837 (952)
T KOG0735|consen 771 SIAPKRGHDSTGVTDRVVNQLLTELDGAE------GL-----DGVYILAATS-RPDLIDPALLRPGRLDKLVYCPL-PDE 837 (952)
T ss_pred ccCcccCCCCCCchHHHHHHHHHhhcccc------cc-----ceEEEEEecC-CccccCHhhcCCCccceeeeCCC-CCc
Confidence 874 468999999997432 21 1346677766 67778899997 9999999985 588
Q ss_pred hhHHHHHH
Q 006254 302 EDRVAAVG 309 (653)
Q Consensus 302 ~~r~~I~~ 309 (653)
.+|.+|++
T Consensus 838 ~eRl~il~ 845 (952)
T KOG0735|consen 838 PERLEILQ 845 (952)
T ss_pred HHHHHHHH
Confidence 88999976
No 178
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.28 E-value=5.1e-11 Score=125.78 Aligned_cols=107 Identities=27% Similarity=0.352 Sum_probs=75.6
Q ss_pred CceEEecccccCCHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCC-----------CcccHHHHhhhcccc
Q 006254 225 RGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE-----------GVVREHLLDRIAINL 293 (653)
Q Consensus 225 ~giL~IDEi~~l~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e-----------g~l~~aLldRf~~~v 293 (653)
+|||||||+|.|+-+....|..+|++.. .-++|.+||..- .-++.+||||+-++
T Consensus 279 pGVLFIDEvHmLDiEcFsfLnralEs~~--------------sPiiIlATNRg~~~irGt~~~sphGiP~DlLDRllII- 343 (398)
T PF06068_consen 279 PGVLFIDEVHMLDIECFSFLNRALESEL--------------SPIIILATNRGITKIRGTDIISPHGIPLDLLDRLLII- 343 (398)
T ss_dssp E-EEEEESGGGSBHHHHHHHHHHHTSTT----------------EEEEEES-SEEE-BTTS-EEETT--HHHHTTEEEE-
T ss_pred cceEEecchhhccHHHHHHHHHHhcCCC--------------CcEEEEecCceeeeccCccCcCCCCCCcchHhhcEEE-
Confidence 7999999999999999999999999765 236888888521 24677999999655
Q ss_pred cccCCCCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHH
Q 006254 294 SADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELY 373 (653)
Q Consensus 294 ~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~ 373 (653)
.+. |++.++..+|+.. |..-.+|.++++++++|+.+..+. |+|-++.
T Consensus 344 ~t~-py~~~ei~~Il~i-----------------------------R~~~E~v~i~~~al~~L~~ig~~~---SLRYAiq 390 (398)
T PF06068_consen 344 RTK-PYSEEEIKQILKI-----------------------------RAKEEDVEISEDALDLLTKIGVET---SLRYAIQ 390 (398)
T ss_dssp EE-----HHHHHHHHHH-----------------------------HHHHCT--B-HHHHHHHHHHHHHS----HHHHHH
T ss_pred ECC-CCCHHHHHHHHHh-----------------------------hhhhhcCcCCHHHHHHHHHHhhhc---cHHHHHH
Confidence 665 8888887777664 333457899999999999998876 7899999
Q ss_pred HHHHHH
Q 006254 374 AARVAK 379 (653)
Q Consensus 374 llr~Ar 379 (653)
++..|.
T Consensus 391 Li~~a~ 396 (398)
T PF06068_consen 391 LITPAS 396 (398)
T ss_dssp CHHHHH
T ss_pred hhhhhh
Confidence 886654
No 179
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=9.8e-11 Score=134.53 Aligned_cols=231 Identities=21% Similarity=0.190 Sum_probs=130.6
Q ss_pred cCCCCCCCCceechHHHHHHHHHhcccCC-CceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccc
Q 006254 87 YGRQFFPLAAVVGQDAIKTALLLGAIDRE-IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL 165 (653)
Q Consensus 87 ~~~~~~~f~~IvGq~~~k~aL~~~av~p~-~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~ 165 (653)
.+.++..|++|+||+.++..|..++.... .+++||+||+|||||++|+++++.+.-........-.| .-|+.|
T Consensus 8 ~kyRP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~C------g~C~~C 81 (620)
T PRK14948 8 HKYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPC------GKCELC 81 (620)
T ss_pred HHhCCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCC------cccHHH
Confidence 35678889999999999998865544332 35799999999999999999999884110000000111 124444
Q ss_pred cccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHH
Q 006254 166 DEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLL 245 (653)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll 245 (653)
...... ....|+.+.... -.|.-++...+. .. .+.| ..+...|+||||++.|+.+.++.||
T Consensus 82 ~~i~~g----------~h~D~~ei~~~~----~~~vd~IReii~-~a-~~~p---~~~~~KViIIDEad~Lt~~a~naLL 142 (620)
T PRK14948 82 RAIAAG----------NALDVIEIDAAS----NTGVDNIRELIE-RA-QFAP---VQARWKVYVIDECHMLSTAAFNALL 142 (620)
T ss_pred HHHhcC----------CCccEEEEeccc----cCCHHHHHHHHH-HH-hhCh---hcCCceEEEEECccccCHHHHHHHH
Confidence 332110 011233332210 011111111110 00 0111 1133469999999999999999999
Q ss_pred HHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhh
Q 006254 246 NVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMV 325 (653)
Q Consensus 246 ~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~ 325 (653)
..|++-. ..++||.++| +...+.+.|++|+..+ .+.. ...++....+..
T Consensus 143 K~LEePp-------------~~tvfIL~t~-~~~~llpTIrSRc~~~-~f~~-l~~~ei~~~L~~--------------- 191 (620)
T PRK14948 143 KTLEEPP-------------PRVVFVLATT-DPQRVLPTIISRCQRF-DFRR-IPLEAMVQHLSE--------------- 191 (620)
T ss_pred HHHhcCC-------------cCeEEEEEeC-ChhhhhHHHHhheeEE-EecC-CCHHHHHHHHHH---------------
Confidence 9999642 3456666666 5556888999999765 6663 333322222110
Q ss_pred hhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHH
Q 006254 326 EEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLK 396 (653)
Q Consensus 326 ~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~ 396 (653)
+. . ...+.++++++..|++++. . +.|..+.+++. ++.+.+ .|+.++|.
T Consensus 192 ----------ia--~--kegi~is~~al~~La~~s~---G-~lr~A~~lLek---lsL~~~--~It~e~V~ 239 (620)
T PRK14948 192 ----------IA--E--KESIEIEPEALTLVAQRSQ---G-GLRDAESLLDQ---LSLLPG--PITPEAVW 239 (620)
T ss_pred ----------HH--H--HhCCCCCHHHHHHHHHHcC---C-CHHHHHHHHHH---HHhccC--CCCHHHHH
Confidence 00 0 1245688888887776652 2 46777666653 222332 35555544
No 180
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most,
Probab=99.27 E-value=2.3e-11 Score=116.07 Aligned_cols=87 Identities=32% Similarity=0.435 Sum_probs=76.1
Q ss_pred eEEEEEeCCCCCChhHHHHHHHHHHHHHHhHcCCCCeEEEEEeecCCcEEEcCCCc----CHHHHHHHHhcCCCCCCCch
Q 006254 563 LVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSR----SIAMARKRLERLPCGGGSPL 638 (653)
Q Consensus 563 ~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~ay~~rd~v~li~F~~~~a~~~lp~t~----~~~~~~~~L~~l~~gG~Tpl 638 (653)
+++||||+||||.++||..+|.++..++ +.+..+|+||||+|.+ .+.+++|++. +...+...|..+.++|+|++
T Consensus 2 ~v~~vlD~S~SM~~~rl~~ak~a~~~l~-~~l~~~~~~~li~F~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~T~~ 79 (155)
T cd01466 2 DLVAVLDVSGSMAGDKLQLVKHALRFVI-SSLGDADRLSIVTFST-SAKRLSPLRRMTAKGKRSAKRVVDGLQAGGGTNV 79 (155)
T ss_pred cEEEEEECCCCCCcHHHHHHHHHHHHHH-HhCCCcceEEEEEecC-CccccCCCcccCHHHHHHHHHHHHhccCCCCccH
Confidence 5899999999999899999999988776 5678899999999975 5788888873 46778889999999999999
Q ss_pred HHHHHHHHHHHhh
Q 006254 639 AHGLSMGWAKCGE 651 (653)
Q Consensus 639 ~~gl~~a~~~l~~ 651 (653)
+.||..|++.+..
T Consensus 80 ~~al~~a~~~~~~ 92 (155)
T cd01466 80 VGGLKKALKVLGD 92 (155)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998864
No 181
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=1.2e-10 Score=126.51 Aligned_cols=222 Identities=18% Similarity=0.220 Sum_probs=134.8
Q ss_pred cCCCCCCCCceechHHHHHHHHHhcccCC-CceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccc
Q 006254 87 YGRQFFPLAAVVGQDAIKTALLLGAIDRE-IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL 165 (653)
Q Consensus 87 ~~~~~~~f~~IvGq~~~k~aL~~~av~p~-~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~ 165 (653)
.+.+|..|++|+||+.+++.+.-..-+.. .+++||+||+|+|||++|+++++.+... ...++ ++.
T Consensus 9 ~k~rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~-------~~~~~------~~~- 74 (367)
T PRK14970 9 RKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQP-------GYDDP------NED- 74 (367)
T ss_pred HHHCCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC-------CCCCC------CCC-
Confidence 45788999999999999998866554433 3469999999999999999999987410 00000 000
Q ss_pred cccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHH
Q 006254 166 DEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLL 245 (653)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll 245 (653)
.+..++.+.... ..+.-++...+.. . ...| . .++..||+|||++.+....++.|+
T Consensus 75 ----------------~~~~~~~l~~~~----~~~~~~i~~l~~~-~-~~~p-~--~~~~kiviIDE~~~l~~~~~~~ll 129 (367)
T PRK14970 75 ----------------FSFNIFELDAAS----NNSVDDIRNLIDQ-V-RIPP-Q--TGKYKIYIIDEVHMLSSAAFNAFL 129 (367)
T ss_pred ----------------CCcceEEecccc----CCCHHHHHHHHHH-H-hhcc-c--cCCcEEEEEeChhhcCHHHHHHHH
Confidence 011122221110 0110111111100 0 0001 1 234569999999999999999999
Q ss_pred HHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhh
Q 006254 246 NVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMV 325 (653)
Q Consensus 246 ~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~ 325 (653)
..+++.. ...++|.++| ....+.+++.+|+..+ .+. +++.++...++...
T Consensus 130 ~~le~~~-------------~~~~~Il~~~-~~~kl~~~l~sr~~~v-~~~-~~~~~~l~~~l~~~-------------- 179 (367)
T PRK14970 130 KTLEEPP-------------AHAIFILATT-EKHKIIPTILSRCQIF-DFK-RITIKDIKEHLAGI-------------- 179 (367)
T ss_pred HHHhCCC-------------CceEEEEEeC-CcccCCHHHHhcceeE-ecC-CccHHHHHHHHHHH--------------
Confidence 9887532 2345666666 4567778999998754 776 44544433332210
Q ss_pred hhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHHH
Q 006254 326 EEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (653)
Q Consensus 326 ~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~ 400 (653)
. ...++.+++++++.|++.+ +. +.|..+..++... .+.+.. ||.++|+.++.
T Consensus 180 -----------~----~~~g~~i~~~al~~l~~~~---~g-dlr~~~~~lekl~---~y~~~~-it~~~v~~~~~ 231 (367)
T PRK14970 180 -----------A----VKEGIKFEDDALHIIAQKA---DG-ALRDALSIFDRVV---TFCGKN-ITRQAVTENLN 231 (367)
T ss_pred -----------H----HHcCCCCCHHHHHHHHHhC---CC-CHHHHHHHHHHHH---HhcCCC-CCHHHHHHHhC
Confidence 0 1135789999999998764 22 5777777765433 344554 99999887764
No 182
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.26 E-value=4.5e-12 Score=116.13 Aligned_cols=115 Identities=30% Similarity=0.386 Sum_probs=80.3
Q ss_pred EEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeEeCCCCCcccce
Q 006254 119 IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRL 198 (653)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l 198 (653)
|||+||||||||++|+.+++.+. .+|+.+......+..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~------------------------------------------~~~~~i~~~~~~~~~ 38 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG------------------------------------------FPFIEIDGSELISSY 38 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT------------------------------------------SEEEEEETTHHHTSS
T ss_pred CEEECcCCCCeeHHHHHHHhhcc------------------------------------------ccccccccccccccc
Confidence 79999999999999999999873 345554444332222
Q ss_pred eeecchhhhhccCCccccccccccc----cCceEEecccccCCHHH-----------HHHHHHHHHcCceEEeeCCeeEE
Q 006254 199 IGSVDVEESVKTGTTVFQPGLLAEA----HRGVLYIDEINLLDEGI-----------SNLLLNVLTEGVNIVEREGISFK 263 (653)
Q Consensus 199 ~G~~d~~~~~~~g~~~~~~Gll~~A----~~giL~IDEi~~l~~~~-----------~~~Ll~~l~~g~~~v~r~G~s~~ 263 (653)
.+. ..+.+ ...+..+ ..+||||||++.+.... ++.|+..++.....
T Consensus 39 ~~~--~~~~i--------~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~--------- 99 (132)
T PF00004_consen 39 AGD--SEQKI--------RDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSK--------- 99 (132)
T ss_dssp TTH--HHHHH--------HHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTT---------
T ss_pred ccc--ccccc--------ccccccccccccceeeeeccchhcccccccccccccccccceeeecccccccc---------
Confidence 221 01111 1122221 25899999999997665 89999999876511
Q ss_pred eecCcEEEEEecCCCCcccHHHH-hhhccccccc
Q 006254 264 HPCKPLLIATYNPEEGVVREHLL-DRIAINLSAD 296 (653)
Q Consensus 264 ~p~~~~lIattNp~eg~l~~aLl-dRf~~~v~l~ 296 (653)
..++++|+|+| ....+++.|+ +||+..++++
T Consensus 100 -~~~~~vI~ttn-~~~~i~~~l~~~rf~~~i~~~ 131 (132)
T PF00004_consen 100 -NSRVIVIATTN-SPDKIDPALLRSRFDRRIEFP 131 (132)
T ss_dssp -SSSEEEEEEES-SGGGSCHHHHSTTSEEEEEE-
T ss_pred -cccceeEEeeC-ChhhCCHhHHhCCCcEEEEcC
Confidence 23589999999 5888999999 9999998774
No 183
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=1.9e-10 Score=121.09 Aligned_cols=243 Identities=17% Similarity=0.141 Sum_probs=136.1
Q ss_pred CCCCCCCceechHHHHHHHHHhcc--cCC------CceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCc
Q 006254 89 RQFFPLAAVVGQDAIKTALLLGAI--DRE------IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDE 160 (653)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~~~av--~p~------~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~ 160 (653)
....||.+||=+..+.+.+.-.++ ... -.+||++||||||||++||-|+..++
T Consensus 349 ~gk~pl~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~SG------------------- 409 (630)
T KOG0742|consen 349 RGKDPLEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHSG------------------- 409 (630)
T ss_pred cCCCCcCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhcC-------------------
Confidence 345689999999998888832222 111 24599999999999999999999764
Q ss_pred ccccccccccccccccccccccCCCeEeCCCCCcccceeeecc--hhhhhccCCccccccccccccCceEEeccccc---
Q 006254 161 WEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVD--VEESVKTGTTVFQPGLLAEAHRGVLYIDEINL--- 235 (653)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d--~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~--- 235 (653)
..|-.+..+-. .-+|.-- --.-+|.....-..|+ +|||||.+.
T Consensus 410 -----------------------lDYA~mTGGDV--APlG~qaVTkiH~lFDWakkS~rGL-------llFIDEADAFLc 457 (630)
T KOG0742|consen 410 -----------------------LDYAIMTGGDV--APLGAQAVTKIHKLFDWAKKSRRGL-------LLFIDEADAFLC 457 (630)
T ss_pred -----------------------CceehhcCCCc--cccchHHHHHHHHHHHHHhhcccce-------EEEehhhHHHHH
Confidence 11111100000 0011100 0011122222222333 689999975
Q ss_pred ------CCHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHH
Q 006254 236 ------LDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVG 309 (653)
Q Consensus 236 ------l~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~ 309 (653)
++...-.+|..++ .|.|. ..-+|+|+.+|| .+|.|+.++-|||+-.|++++| -.++|..++.
T Consensus 458 eRnktymSEaqRsaLNAlL-------fRTGd---qSrdivLvlAtN-rpgdlDsAV~DRide~veFpLP-GeEERfkll~ 525 (630)
T KOG0742|consen 458 ERNKTYMSEAQRSALNALL-------FRTGD---QSRDIVLVLATN-RPGDLDSAVNDRIDEVVEFPLP-GEEERFKLLN 525 (630)
T ss_pred HhchhhhcHHHHHHHHHHH-------HHhcc---cccceEEEeccC-CccchhHHHHhhhhheeecCCC-ChHHHHHHHH
Confidence 3444444443333 12232 223689999999 9999999999999999999975 7888998887
Q ss_pred HHHH-HHhhhhHH--hhhhhhhhhHHHHHHHHHHhhhcccCCCHHH-HHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHc
Q 006254 310 IATQ-FQERSNEV--FKMVEEETDLAKTQIILAREYLKDVAIGREQ-LKYLVMEALRGGCQGHRAELYAARVAKCLAALE 385 (653)
Q Consensus 310 ~~~~-~~~~~~~~--~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~-l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~ 385 (653)
+... |...+..- ...|.. +. ++....+.+.... -+.+.+.+......|-|..-.++---.+-+.-.
T Consensus 526 lYlnkyi~~~~~~~~~~~~~~--------lf--kk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva~vQAavYgs 595 (630)
T KOG0742|consen 526 LYLNKYILKPATSGKPGKWSH--------LF--KKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVASVQAAVYGS 595 (630)
T ss_pred HHHHHHhcCcCCCCCCchhhH--------HH--hhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhcc
Confidence 5422 11111100 011111 11 1112234455433 334555566666668887666653333322222
Q ss_pred CCCCccHHHHHHHHHHHcC
Q 006254 386 GREKVNVDDLKKAVELVIL 404 (653)
Q Consensus 386 gr~~Vt~eDv~~A~~lvl~ 404 (653)
....++..-+++.+.+...
T Consensus 596 edcvLd~~lf~e~v~ykv~ 614 (630)
T KOG0742|consen 596 EDCVLDEALFDERVDYKVQ 614 (630)
T ss_pred cchhhHHHHHHHHHHHHHH
Confidence 2335666667777777665
No 184
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.24 E-value=4.5e-11 Score=130.38 Aligned_cols=172 Identities=18% Similarity=0.173 Sum_probs=102.4
Q ss_pred CCCceechHHHHHHHHHhcccCC----------CceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccc
Q 006254 93 PLAAVVGQDAIKTALLLGAIDRE----------IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWE 162 (653)
Q Consensus 93 ~f~~IvGq~~~k~aL~~~av~p~----------~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~ 162 (653)
.|++|+||+.+++.|.-++..+. .+.+||+||+|+|||++|++++..+ +|.... ...|
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l-----------~c~~~~-~~~C 70 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAAL-----------QCTDPD-EPGC 70 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHh-----------CCCCCC-CCCC
Confidence 48899999999999866555442 3459999999999999999999976 353211 2234
Q ss_pred ccccccccccccccccccccCCC-eEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHH
Q 006254 163 DGLDEKAEYDTAGNLKTQIARSP-FVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGIS 241 (653)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~-fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~ 241 (653)
..|........ .+.| |..+.... .-+|.-++. .+.... ...| ..++..|+||||+++|+...+
T Consensus 71 g~C~~C~~~~~--------~~hpD~~~i~~~~---~~i~i~~iR-~l~~~~-~~~p---~~~~~kViiIDead~m~~~aa 134 (394)
T PRK07940 71 GECRACRTVLA--------GTHPDVRVVAPEG---LSIGVDEVR-ELVTIA-ARRP---STGRWRIVVIEDADRLTERAA 134 (394)
T ss_pred CCCHHHHHHhc--------CCCCCEEEecccc---ccCCHHHHH-HHHHHH-HhCc---ccCCcEEEEEechhhcCHHHH
Confidence 33333111100 1222 22222211 112211111 111110 0111 123456999999999999999
Q ss_pred HHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHH
Q 006254 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAV 308 (653)
Q Consensus 242 ~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~ 308 (653)
|.||..|++.. +..++|++|+| ...+.+.+++|+..+ .+. |++.++..+.+
T Consensus 135 naLLk~LEep~------------~~~~fIL~a~~--~~~llpTIrSRc~~i-~f~-~~~~~~i~~~L 185 (394)
T PRK07940 135 NALLKAVEEPP------------PRTVWLLCAPS--PEDVLPTIRSRCRHV-ALR-TPSVEAVAEVL 185 (394)
T ss_pred HHHHHHhhcCC------------CCCeEEEEECC--hHHChHHHHhhCeEE-ECC-CCCHHHHHHHH
Confidence 99999998743 11234555555 567889999999654 777 44666544433
No 185
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.23 E-value=5.5e-11 Score=132.74 Aligned_cols=221 Identities=18% Similarity=0.256 Sum_probs=134.4
Q ss_pred CCCCCCce-echHH--HHHHHHHhcccCC--CceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccc
Q 006254 90 QFFPLAAV-VGQDA--IKTALLLGAIDRE--IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDG 164 (653)
Q Consensus 90 ~~~~f~~I-vGq~~--~k~aL~~~av~p~--~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~ 164 (653)
+.++|+.+ +|... +..++...+-+|+ ..+++|+||+|||||+|++++++.+....
T Consensus 117 ~~~tfd~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~-------------------- 176 (450)
T PRK00149 117 PKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKN-------------------- 176 (450)
T ss_pred CCCcccccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhC--------------------
Confidence 46788885 45442 3333333233442 35699999999999999999999863100
Q ss_pred ccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCc-cccccccccccCceEEecccccCCH--HHH
Q 006254 165 LDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTT-VFQPGLLAEAHRGVLYIDEINLLDE--GIS 241 (653)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~-~~~~Gll~~A~~giL~IDEi~~l~~--~~~ 241 (653)
....++.++......++.+.+ ..+.. .+.. .+. +-.+|+||||+.+.. ..+
T Consensus 177 -----------------~~~~v~yi~~~~~~~~~~~~~------~~~~~~~~~~-~~~--~~dlLiiDDi~~l~~~~~~~ 230 (450)
T PRK00149 177 -----------------PNAKVVYVTSEKFTNDFVNAL------RNNTMEEFKE-KYR--SVDVLLIDDIQFLAGKERTQ 230 (450)
T ss_pred -----------------CCCeEEEEEHHHHHHHHHHHH------HcCcHHHHHH-HHh--cCCEEEEehhhhhcCCHHHH
Confidence 012233333222222222221 11110 0110 111 235999999998843 345
Q ss_pred HHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCC---cccHHHHhhhc--ccccccCCCCHhhHHHHHHHHHHHHh
Q 006254 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG---VVREHLLDRIA--INLSADLPMTFEDRVAAVGIATQFQE 316 (653)
Q Consensus 242 ~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg---~l~~aLldRf~--~~v~l~~p~~~~~r~~I~~~~~~~~~ 316 (653)
..|+..++... + .| ..++| |+|..+. .+.+.|.+||. +.+.+. |++.+.|.+|++....
T Consensus 231 ~~l~~~~n~l~---~-~~-------~~iii-ts~~~p~~l~~l~~~l~SRl~~gl~v~i~-~pd~~~r~~il~~~~~--- 294 (450)
T PRK00149 231 EEFFHTFNALH---E-AG-------KQIVL-TSDRPPKELPGLEERLRSRFEWGLTVDIE-PPDLETRIAILKKKAE--- 294 (450)
T ss_pred HHHHHHHHHHH---H-CC-------CcEEE-ECCCCHHHHHHHHHHHHhHhcCCeeEEec-CCCHHHHHHHHHHHHH---
Confidence 66666554321 0 01 12344 4443332 37789999994 677887 6799999888773211
Q ss_pred hhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHH
Q 006254 317 RSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLK 396 (653)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~ 396 (653)
...+.++++++++|++.+.. +.|..+.++....+.|.+.++ .||.+.++
T Consensus 295 --------------------------~~~~~l~~e~l~~ia~~~~~----~~R~l~~~l~~l~~~~~~~~~-~it~~~~~ 343 (450)
T PRK00149 295 --------------------------EEGIDLPDEVLEFIAKNITS----NVRELEGALNRLIAYASLTGK-PITLELAK 343 (450)
T ss_pred --------------------------HcCCCCCHHHHHHHHcCcCC----CHHHHHHHHHHHHHHHHhhCC-CCCHHHHH
Confidence 12578999999999765422 579888888888888888776 59999999
Q ss_pred HHHHHHc
Q 006254 397 KAVELVI 403 (653)
Q Consensus 397 ~A~~lvl 403 (653)
+++.-.+
T Consensus 344 ~~l~~~~ 350 (450)
T PRK00149 344 EALKDLL 350 (450)
T ss_pred HHHHHhh
Confidence 9998654
No 186
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.23 E-value=4.8e-11 Score=109.88 Aligned_cols=149 Identities=26% Similarity=0.246 Sum_probs=94.1
Q ss_pred echHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccccccccccc
Q 006254 98 VGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNL 177 (653)
Q Consensus 98 vGq~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~~~~~~~ 177 (653)
+|++.....+...+..+...+++|+||||||||++++.++..+..
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~----------------------------------- 45 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFR----------------------------------- 45 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhc-----------------------------------
Confidence 367777888876666556778999999999999999999998741
Q ss_pred cccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHHHHHHcCceEEee
Q 006254 178 KTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVER 257 (653)
Q Consensus 178 ~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~l~~g~~~v~r 257 (653)
.+.+++.+.................. ............+.++|+|||++.++......++..+.......
T Consensus 46 ----~~~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~-- 115 (151)
T cd00009 46 ----PGAPFLYLNASDLLEGLVVAELFGHF----LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLR-- 115 (151)
T ss_pred ----CCCCeEEEehhhhhhhhHHHHHhhhh----hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCcee--
Confidence 02233333222111111110000000 00011122223456899999999998888889999988765321
Q ss_pred CCeeEEeecCcEEEEEecCCCC-cccHHHHhhhccccccc
Q 006254 258 EGISFKHPCKPLLIATYNPEEG-VVREHLLDRIAINLSAD 296 (653)
Q Consensus 258 ~G~s~~~p~~~~lIattNp~eg-~l~~aLldRf~~~v~l~ 296 (653)
..+.++.+|+++|+... .+.+.+.+||+..+.+.
T Consensus 116 -----~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~i~~~ 150 (151)
T cd00009 116 -----IDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIP 150 (151)
T ss_pred -----ccCCCeEEEEecCccccCCcChhHHhhhccEeecC
Confidence 12346788999996654 78889999998665553
No 187
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex.
Probab=99.21 E-value=7e-11 Score=116.49 Aligned_cols=91 Identities=20% Similarity=0.304 Sum_probs=78.9
Q ss_pred cCCceEEEEEeCCCCCChhHHHHHHHHHHHHHHhHcCCCCeEEEEEeecCCcEEEcCCC---------cCHHHHHHHHhc
Q 006254 559 KAGALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPS---------RSIAMARKRLER 629 (653)
Q Consensus 559 ~~~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~ay~~rd~v~li~F~~~~a~~~lp~t---------~~~~~~~~~L~~ 629 (653)
..+.+|+||||+||||.+.||..+|.++..++ +.+..+|+|+||+|++ .+..++|.+ .+...+...|..
T Consensus 11 ~~p~~vv~llD~SgSM~~~~l~~ak~~~~~ll-~~l~~~d~v~lv~F~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 88 (190)
T cd01463 11 TSPKDIVILLDVSGSMTGQRLHLAKQTVSSIL-DTLSDNDFFNIITFSN-EVNPVVPCFNDTLVQATTSNKKVLKEALDM 88 (190)
T ss_pred cCCceEEEEEECCCCCCcHHHHHHHHHHHHHH-HhCCCCCEEEEEEeCC-CeeEEeeecccceEecCHHHHHHHHHHHhh
Confidence 45889999999999999899999999999998 4568899999999975 477776643 356778889999
Q ss_pred CCCCCCCchHHHHHHHHHHHhh
Q 006254 630 LPCGGGSPLAHGLSMGWAKCGE 651 (653)
Q Consensus 630 l~~gG~Tpl~~gl~~a~~~l~~ 651 (653)
+.++|+|++..||..|++.+.+
T Consensus 89 l~~~G~T~~~~al~~a~~~l~~ 110 (190)
T cd01463 89 LEAKGIANYTKALEFAFSLLLK 110 (190)
T ss_pred CCCCCcchHHHHHHHHHHHHHH
Confidence 9999999999999999998875
No 188
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.1e-10 Score=123.86 Aligned_cols=205 Identities=19% Similarity=0.264 Sum_probs=129.5
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeEeCCCC-Ccc
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLG-VTE 195 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~-~~~ 195 (653)
.+|||.||+|+|||.||+.||..+ +.||+...+. +|-
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~l------------------------------------------dVPfaIcDcTtLTQ 264 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVL------------------------------------------DVPFAICDCTTLTQ 264 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHh------------------------------------------CCCeEEecccchhh
Confidence 349999999999999999999988 5677766554 455
Q ss_pred cceeeecchhhhhccCCccccccccccccCceEEecccccCC--------------HHHHHHHHHHHHcCceEEeeC---
Q 006254 196 DRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLD--------------EGISNLLLNVLTEGVNIVERE--- 258 (653)
Q Consensus 196 ~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~--------------~~~~~~Ll~~l~~g~~~v~r~--- 258 (653)
..++|. |++.-+..= .....+-+++|..||+|||||+.+. +.+|..||..++--.+.|..-
T Consensus 265 AGYVGe-DVEsvi~KL-l~~A~~nVekAQqGIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~ 342 (564)
T KOG0745|consen 265 AGYVGE-DVESVIQKL-LQEAEYNVEKAQQGIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSR 342 (564)
T ss_pred cccccc-cHHHHHHHH-HHHccCCHHHHhcCeEEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCC
Confidence 567774 554433210 1122345677889999999999874 468999999998766666221
Q ss_pred ----CeeEEeec-CcEEEEE--ecC---------C---------------------C------------------C----
Q 006254 259 ----GISFKHPC-KPLLIAT--YNP---------E---------------------E------------------G---- 279 (653)
Q Consensus 259 ----G~s~~~p~-~~~lIat--tNp---------~---------------------e------------------g---- 279 (653)
|..+.+.. ++.+|+. .+- + . +
T Consensus 343 ~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLis 422 (564)
T KOG0745|consen 343 RKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDDKSLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLIS 422 (564)
T ss_pred CCCCCCeEEEeccceEEEecccccchHHHHHHhhcchhcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhh
Confidence 22333322 2333322 000 0 0 0
Q ss_pred -cccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHH-hhhcccCCCHHHHHHHH
Q 006254 280 -VVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAR-EYLKDVAIGREQLKYLV 357 (653)
Q Consensus 280 -~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar-~~l~~v~is~~~l~~l~ 357 (653)
-+-|.|.-||.++|.+. +.+.+....|+. .|. ..|-.+....- ..--.+.+++++++.++
T Consensus 423 fGmIPEfVGRfPVlVplh-~L~~~~Lv~VLt-------EPk----------naL~~Qyk~lf~~~nV~L~fTe~Al~~IA 484 (564)
T KOG0745|consen 423 FGMIPEFVGRFPVLVPLH-SLDEDQLVRVLT-------EPK----------NALGKQYKKLFGMDNVELHFTEKALEAIA 484 (564)
T ss_pred hcCcHHHhcccceEeecc-ccCHHHHHHHHh-------cch----------hhHHHHHHHHhccCCeeEEecHHHHHHHH
Confidence 13378888999998888 567776666643 111 01111111111 11123579999999999
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHHHHH
Q 006254 358 MEALRGGCQGHRAELYAARVAKCLAAL 384 (653)
Q Consensus 358 ~~~~~~~i~s~R~~i~llr~Ara~Aal 384 (653)
+++...+. +.|++..+++.+-.-|.+
T Consensus 485 q~Al~r~T-GARgLRsIlE~~Lleamf 510 (564)
T KOG0745|consen 485 QLALKRKT-GARGLRSILESLLLEAMF 510 (564)
T ss_pred HHHHhhcc-chHHHHHHHHHHHhhhcc
Confidence 99998877 889988888766555544
No 189
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=7.5e-11 Score=131.49 Aligned_cols=201 Identities=21% Similarity=0.260 Sum_probs=128.9
Q ss_pred CceechHHHHHHHH-Hhccc---CCCce--EEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccccccc
Q 006254 95 AAVVGQDAIKTALL-LGAID---REIGG--IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (653)
Q Consensus 95 ~~IvGq~~~k~aL~-~~av~---p~~~g--VLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~ 168 (653)
++-.|.+++|+.++ ..||. +...| +.|+||||+|||+++|.||..|.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALn--------------------------- 463 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALN--------------------------- 463 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhC---------------------------
Confidence 45678899998873 33332 22233 88999999999999999999984
Q ss_pred ccccccccccccccCCCeEeCCCCC--cccceeeecchhhhhccCCccccccccccc------cCceEEecccccCCH--
Q 006254 169 AEYDTAGNLKTQIARSPFVQIPLGV--TEDRLIGSVDVEESVKTGTTVFQPGLLAEA------HRGVLYIDEINLLDE-- 238 (653)
Q Consensus 169 ~~~~~~~~~~~~~~~~~fv~l~~~~--~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A------~~giL~IDEi~~l~~-- 238 (653)
..|+.++.+- ...++-|+- -- ..-..||-+-++ ++.+++||||+.+..
T Consensus 464 ---------------RkFfRfSvGG~tDvAeIkGHR----RT---YVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~ 521 (906)
T KOG2004|consen 464 ---------------RKFFRFSVGGMTDVAEIKGHR----RT---YVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGH 521 (906)
T ss_pred ---------------CceEEEeccccccHHhhcccc----ee---eeccCChHHHHHHHhhCCCCceEEeehhhhhCCCC
Confidence 4566655441 122333321 00 011346666554 567999999999854
Q ss_pred --HHHHHHHHHHHcCceEEeeCCeeEEee---cCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHH
Q 006254 239 --GISNLLLNVLTEGVNIVEREGISFKHP---CKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQ 313 (653)
Q Consensus 239 --~~~~~Ll~~l~~g~~~v~r~G~s~~~p---~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~ 313 (653)
+=..+||.+|+-..|.-.- .....+| .++++|+|.| .-..++++|+||+.++ ++.. +..+++..|.++.+-
T Consensus 522 qGDPasALLElLDPEQNanFl-DHYLdVp~DLSkVLFicTAN-~idtIP~pLlDRMEvI-elsG-Yv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 522 QGDPASALLELLDPEQNANFL-DHYLDVPVDLSKVLFICTAN-VIDTIPPPLLDRMEVI-ELSG-YVAEEKVKIAERYLI 597 (906)
T ss_pred CCChHHHHHHhcChhhccchh-hhccccccchhheEEEEecc-ccccCChhhhhhhhee-eccC-ccHHHHHHHHHHhhh
Confidence 2357899988765532110 1111223 3588999999 7778899999999988 8884 788988888764321
Q ss_pred HHhhhhHHhhhhhhhhhHHHHHHHHHHh-hhcccCCCHHHHHHHH-HHHHhcCCCCc
Q 006254 314 FQERSNEVFKMVEEETDLAKTQIILARE-YLKDVAIGREQLKYLV-MEALRGGCQGH 368 (653)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~l~~~i~~ar~-~l~~v~is~~~l~~l~-~~~~~~~i~s~ 368 (653)
- +...... -...|.++++++..|. .||.+.|+.++
T Consensus 598 p--------------------~a~~~~gl~~e~v~is~~al~~lI~~YcrEaGVRnL 634 (906)
T KOG2004|consen 598 P--------------------QALKDCGLKPEQVKISDDALLALIERYCREAGVRNL 634 (906)
T ss_pred h--------------------HHHHHcCCCHHhcCccHHHHHHHHHHHHHHHhHHHH
Confidence 1 1111111 1235889998877555 57888887443
No 190
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.20 E-value=4.9e-11 Score=117.47 Aligned_cols=217 Identities=18% Similarity=0.159 Sum_probs=141.3
Q ss_pred cccCCCCCCCCceechHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccc
Q 006254 85 DSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDG 164 (653)
Q Consensus 85 ~~~~~~~~~f~~IvGq~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~ 164 (653)
...+++|.-+.+|||.++....|.+-+-.-...+++|.|||||||||-+..|+..|-.-. ..
T Consensus 17 wVeKYrP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~------------~k------ 78 (333)
T KOG0991|consen 17 WVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDS------------YK------ 78 (333)
T ss_pred HHHhhCchHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChh------------hh------
Confidence 334677888999999999999997666555667899999999999999999999874100 00
Q ss_pred ccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCC-ccccccccccccCceEEecccccCCHHHHHH
Q 006254 165 LDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGT-TVFQPGLLAEAHRGVLYIDEINLLDEGISNL 243 (653)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~-~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~ 243 (653)
-. .+..++++++-+..+.-.--.|... ....||-. -|+++||.+.+....|.+
T Consensus 79 -------------------e~--vLELNASdeRGIDvVRn~IK~FAQ~kv~lp~grh-----KIiILDEADSMT~gAQQA 132 (333)
T KOG0991|consen 79 -------------------EA--VLELNASDERGIDVVRNKIKMFAQKKVTLPPGRH-----KIIILDEADSMTAGAQQA 132 (333)
T ss_pred -------------------hH--hhhccCccccccHHHHHHHHHHHHhhccCCCCce-----eEEEeeccchhhhHHHHH
Confidence 00 1344555555333221011112222 22334433 599999999999999999
Q ss_pred HHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhh
Q 006254 244 LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFK 323 (653)
Q Consensus 244 Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~ 323 (653)
|.+.|+-..+ ..++..+|| ....+-+++.+|+.+. ... .-.-..|+.+....
T Consensus 133 lRRtMEiyS~-------------ttRFalaCN-~s~KIiEPIQSRCAiL-Rys----klsd~qiL~Rl~~v--------- 184 (333)
T KOG0991|consen 133 LRRTMEIYSN-------------TTRFALACN-QSEKIIEPIQSRCAIL-RYS----KLSDQQILKRLLEV--------- 184 (333)
T ss_pred HHHHHHHHcc-------------cchhhhhhc-chhhhhhhHHhhhHhh-hhc----ccCHHHHHHHHHHH---------
Confidence 9999986542 234566778 4445568889998776 222 11222344433221
Q ss_pred hhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHH
Q 006254 324 MVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (653)
Q Consensus 324 ~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~ 399 (653)
. ....|.++++.++.+.-.+.. .+|..++.++ |-..|-..|+.+.|-.+.
T Consensus 185 -------------~----k~Ekv~yt~dgLeaiifta~G----DMRQalNnLQ-----st~~g~g~Vn~enVfKv~ 234 (333)
T KOG0991|consen 185 -------------A----KAEKVNYTDDGLEAIIFTAQG----DMRQALNNLQ-----STVNGFGLVNQENVFKVC 234 (333)
T ss_pred -------------H----HHhCCCCCcchHHHhhhhccc----hHHHHHHHHH-----HHhccccccchhhhhhcc
Confidence 1 123588999999988776543 4898888874 345677788888776554
No 191
>PRK09087 hypothetical protein; Validated
Probab=99.20 E-value=8.2e-10 Score=112.02 Aligned_cols=130 Identities=12% Similarity=0.035 Sum_probs=85.6
Q ss_pred ceEEecccccCCHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecC-CCCc-ccHHHHhhhc--ccccccCCCCH
Q 006254 226 GVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP-EEGV-VREHLLDRIA--INLSADLPMTF 301 (653)
Q Consensus 226 giL~IDEi~~l~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp-~eg~-l~~aLldRf~--~~v~l~~p~~~ 301 (653)
++|+||+|+.++. .+..|+..++.-. ..| ..+||+++.+ .+.. ..++|.+||. +++++. |++.
T Consensus 89 ~~l~iDDi~~~~~-~~~~lf~l~n~~~----~~g-------~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~-~pd~ 155 (226)
T PRK09087 89 GPVLIEDIDAGGF-DETGLFHLINSVR----QAG-------TSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIG-EPDD 155 (226)
T ss_pred CeEEEECCCCCCC-CHHHHHHHHHHHH----hCC-------CeEEEECCCChHHhccccccHHHHHhCCceeecC-CCCH
Confidence 6899999998742 2344555543221 001 1244444432 2233 3689999994 677888 6688
Q ss_pred hhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH
Q 006254 302 EDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCL 381 (653)
Q Consensus 302 ~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~ 381 (653)
+.+..|+++... . ..+.++++++++|++.+.. +.|..+.++......
T Consensus 156 e~~~~iL~~~~~---------------------------~--~~~~l~~ev~~~La~~~~r----~~~~l~~~l~~L~~~ 202 (226)
T PRK09087 156 ALLSQVIFKLFA---------------------------D--RQLYVDPHVVYYLVSRMER----SLFAAQTIVDRLDRL 202 (226)
T ss_pred HHHHHHHHHHHH---------------------------H--cCCCCCHHHHHHHHHHhhh----hHHHHHHHHHHHHHH
Confidence 888888764311 1 2578999999999987763 578888777666556
Q ss_pred HHHcCCCCccHHHHHHHHHHH
Q 006254 382 AALEGREKVNVDDLKKAVELV 402 (653)
Q Consensus 382 Aal~gr~~Vt~eDv~~A~~lv 402 (653)
+...++ .||...+++++..+
T Consensus 203 ~~~~~~-~it~~~~~~~l~~~ 222 (226)
T PRK09087 203 ALERKS-RITRALAAEVLNEM 222 (226)
T ss_pred HHHhCC-CCCHHHHHHHHHhh
Confidence 666665 69999999998753
No 192
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=2.4e-11 Score=124.17 Aligned_cols=161 Identities=21% Similarity=0.286 Sum_probs=113.6
Q ss_pred CCCCCCceechHHHHHHHHHh----cccCC---------CceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCC
Q 006254 90 QFFPLAAVVGQDAIKTALLLG----AIDRE---------IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT 156 (653)
Q Consensus 90 ~~~~f~~IvGq~~~k~aL~~~----av~p~---------~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~ 156 (653)
..++|+.|-|.-...+++.-. +.+|. ..+++||||||||||.+|++++..+
T Consensus 127 ~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~m---------------- 190 (388)
T KOG0651|consen 127 RNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATM---------------- 190 (388)
T ss_pred cccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhc----------------
Confidence 467899999999888887322 23331 2469999999999999999999987
Q ss_pred CCCcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccC
Q 006254 157 CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLL 236 (653)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l 236 (653)
...|+.+..+..++...|.- .+.+++-. .....-..+|||+|||+..
T Consensus 191 --------------------------g~nfl~v~ss~lv~kyiGEs--aRlIRemf-----~yA~~~~pciifmdeiDAi 237 (388)
T KOG0651|consen 191 --------------------------GVNFLKVVSSALVDKYIGES--ARLIRDMF-----RYAREVIPCIIFMDEIDAI 237 (388)
T ss_pred --------------------------CCceEEeeHhhhhhhhcccH--HHHHHHHH-----HHHhhhCceEEeehhhhhh
Confidence 46788888888888888852 12221111 0111112489999999864
Q ss_pred -----------CHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHh--hhcccccccCCCCHhh
Q 006254 237 -----------DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPMTFED 303 (653)
Q Consensus 237 -----------~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLld--Rf~~~v~l~~p~~~~~ 303 (653)
+.++|..|..++++-. |.. .-.++-+|.|+| ++..|+|+|++ |++..++++.| ....
T Consensus 238 gGRr~se~Ts~dreiqrTLMeLlnqmd------gfd--~l~rVk~ImatN-rpdtLdpaLlRpGRldrk~~iPlp-ne~~ 307 (388)
T KOG0651|consen 238 GGRRFSEGTSSDREIQRTLMELLNQMD------GFD--TLHRVKTIMATN-RPDTLDPALLRPGRLDRKVEIPLP-NEQA 307 (388)
T ss_pred ccEEeccccchhHHHHHHHHHHHHhhc------cch--hcccccEEEecC-CccccchhhcCCccccceeccCCc-chhh
Confidence 4577888888777322 111 112567999999 88899999997 99999999854 6666
Q ss_pred HHHHHH
Q 006254 304 RVAAVG 309 (653)
Q Consensus 304 r~~I~~ 309 (653)
|.+|++
T Consensus 308 r~~I~K 313 (388)
T KOG0651|consen 308 RLGILK 313 (388)
T ss_pred ceeeEe
Confidence 666654
No 193
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.19 E-value=2.2e-11 Score=118.18 Aligned_cols=116 Identities=27% Similarity=0.387 Sum_probs=76.5
Q ss_pred CceEEEECCCCCHHHHHHHHHHhhCC-CCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeEeCCCCCc
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAILP-PIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVT 194 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~-~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~ 194 (653)
.+.+||.||+|+|||.+|++|++.+. . ...+++.+..+..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~---------------------------------------~~~~~~~~d~s~~ 43 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVG---------------------------------------SERPLIRIDMSEY 43 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-S---------------------------------------SCCEEEEEEGGGH
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccC---------------------------------------CccchHHHhhhcc
Confidence 35799999999999999999999985 1 1234444332221
Q ss_pred ccceeeecchhhhhccCCccccccccccccCceEEecccccCCH-----------HHHHHHHHHHHcCceEEeeCCeeEE
Q 006254 195 EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDE-----------GISNLLLNVLTEGVNIVEREGISFK 263 (653)
Q Consensus 195 ~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~-----------~~~~~Ll~~l~~g~~~v~r~G~s~~ 263 (653)
.+ ..|.+..+. ......+|....+++||||||||+++.+ .+++.||.++++|.++- ..|..+.
T Consensus 44 ~~----~~~~~~~~~-~l~~~~~~~v~~~~~gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d-~~g~~vd 117 (171)
T PF07724_consen 44 SE----GDDVESSVS-KLLGSPPGYVGAEEGGVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTD-SYGRTVD 117 (171)
T ss_dssp CS----HHHCSCHCH-HHHHHTTCHHHHHHHTEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEE-TTCCEEE
T ss_pred cc----cchHHhhhh-hhhhcccceeeccchhhhhhHHHhhccccccccchhhHHHHHHHHHHHhcccceec-ccceEEE
Confidence 11 001000000 0011234566666778999999999999 99999999999998653 3343333
Q ss_pred eecCcEEEEEecCC
Q 006254 264 HPCKPLLIATYNPE 277 (653)
Q Consensus 264 ~p~~~~lIattNp~ 277 (653)
. .+.++|+|+|-.
T Consensus 118 ~-~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 118 T-SNIIFIMTSNFG 130 (171)
T ss_dssp G-TTEEEEEEESSS
T ss_pred e-CCceEEEecccc
Confidence 3 368999999953
No 194
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.18 E-value=1.5e-10 Score=127.43 Aligned_cols=221 Identities=17% Similarity=0.233 Sum_probs=132.5
Q ss_pred CCCCCCc-eechHH--HHHHHHHhcccCC--CceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccc
Q 006254 90 QFFPLAA-VVGQDA--IKTALLLGAIDRE--IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDG 164 (653)
Q Consensus 90 ~~~~f~~-IvGq~~--~k~aL~~~av~p~--~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~ 164 (653)
+.++|+. ++|.+. +..++...+-+|. ..+++|+|++|||||+|++++++.+...
T Consensus 105 ~~~tfd~fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~--------------------- 163 (405)
T TIGR00362 105 PKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILEN--------------------- 163 (405)
T ss_pred CCCcccccccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHh---------------------
Confidence 4678888 567553 2333332233443 2469999999999999999999976310
Q ss_pred ccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCc-cccccccccccCceEEecccccCCH--HHH
Q 006254 165 LDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTT-VFQPGLLAEAHRGVLYIDEINLLDE--GIS 241 (653)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~-~~~~Gll~~A~~giL~IDEi~~l~~--~~~ 241 (653)
..+..++.++.......+.+. +..+.. .+. ..+. +..+|+||||+.+.. ..+
T Consensus 164 ----------------~~~~~v~yi~~~~~~~~~~~~------~~~~~~~~~~-~~~~--~~dlLiiDDi~~l~~~~~~~ 218 (405)
T TIGR00362 164 ----------------NPNAKVVYVSSEKFTNDFVNA------LRNNKMEEFK-EKYR--SVDLLLIDDIQFLAGKERTQ 218 (405)
T ss_pred ----------------CCCCcEEEEEHHHHHHHHHHH------HHcCCHHHHH-HHHH--hCCEEEEehhhhhcCCHHHH
Confidence 002233333322111122221 111110 011 1111 235999999998754 356
Q ss_pred HHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCC---CcccHHHHhhhc--ccccccCCCCHhhHHHHHHHHHHHHh
Q 006254 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE---GVVREHLLDRIA--INLSADLPMTFEDRVAAVGIATQFQE 316 (653)
Q Consensus 242 ~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e---g~l~~aLldRf~--~~v~l~~p~~~~~r~~I~~~~~~~~~ 316 (653)
..|+..++.-. + .| ..+|.|+|..+ ..+.+.|.+||. +.|.+. |++.+.|.+|++...
T Consensus 219 ~~l~~~~n~~~---~-~~--------~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~-~pd~~~r~~il~~~~---- 281 (405)
T TIGR00362 219 EEFFHTFNALH---E-NG--------KQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIE-PPDLETRLAILQKKA---- 281 (405)
T ss_pred HHHHHHHHHHH---H-CC--------CCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeC-CCCHHHHHHHHHHHH----
Confidence 66666665321 0 01 12344455333 236788999995 567887 679999988876321
Q ss_pred hhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHH
Q 006254 317 RSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLK 396 (653)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~ 396 (653)
.. ..+.++++++++|++.... +.|....++....+.|...++ .||.+.++
T Consensus 282 -----------------------~~--~~~~l~~e~l~~ia~~~~~----~~r~l~~~l~~l~~~a~~~~~-~it~~~~~ 331 (405)
T TIGR00362 282 -----------------------EE--EGLELPDEVLEFIAKNIRS----NVRELEGALNRLLAYASLTGK-PITLELAK 331 (405)
T ss_pred -----------------------HH--cCCCCCHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHHhCC-CCCHHHHH
Confidence 11 2578999999999865422 468888887777777777775 59999999
Q ss_pred HHHHHHc
Q 006254 397 KAVELVI 403 (653)
Q Consensus 397 ~A~~lvl 403 (653)
+++...+
T Consensus 332 ~~L~~~~ 338 (405)
T TIGR00362 332 EALKDLL 338 (405)
T ss_pred HHHHHhc
Confidence 9987543
No 195
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=99.16 E-value=1.4e-10 Score=113.81 Aligned_cols=90 Identities=23% Similarity=0.291 Sum_probs=78.7
Q ss_pred ceEEEEEeCCCCCCh-----hHHHHHHHHHHHHHHhHc--CCCCeEEEEEeecCCcEEEcCCCcCHHHHHHHHhcC-CCC
Q 006254 562 ALVIFVVDASGSMAL-----NRMQNAKGAALKLLAESY--TCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERL-PCG 633 (653)
Q Consensus 562 ~~v~~vvD~SgSM~~-----~r~~~ak~a~~~ll~~ay--~~rd~v~li~F~~~~a~~~lp~t~~~~~~~~~L~~l-~~g 633 (653)
++++|++|+|+||.. +||+.||.++..|+...+ ...|+||||+|++..+.+++|+|.+.......|..+ +++
T Consensus 4 r~ivi~lD~S~SM~a~D~~ptRl~~ak~~~~~fi~~~~~~~~~~~vglv~f~~~~a~~~~PlT~D~~~~~~~L~~~~~~~ 83 (183)
T cd01453 4 RHLIIVIDCSRSMEEQDLKPSRLAVVLKLLELFIEEFFDQNPISQLGIISIKNGRAEKLTDLTGNPRKHIQALKTARECS 83 (183)
T ss_pred eEEEEEEECcHHHhcCCCCchHHHHHHHHHHHHHHHHhhcCccccEEEEEEcCCccEEEECCCCCHHHHHHHhhcccCCC
Confidence 478999999999964 799999999999996543 356999999996567999999999999988888876 778
Q ss_pred CCCchHHHHHHHHHHHhh
Q 006254 634 GGSPLAHGLSMGWAKCGE 651 (653)
Q Consensus 634 G~Tpl~~gl~~a~~~l~~ 651 (653)
|+|.|+.||..|++.|..
T Consensus 84 G~t~l~~aL~~A~~~l~~ 101 (183)
T cd01453 84 GEPSLQNGLEMALESLKH 101 (183)
T ss_pred CchhHHHHHHHHHHHHhc
Confidence 899999999999999853
No 196
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=1.3e-10 Score=119.27 Aligned_cols=212 Identities=20% Similarity=0.188 Sum_probs=129.5
Q ss_pred EEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeEeCCCCCcccce
Q 006254 119 IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRL 198 (653)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l 198 (653)
|||.||||||||+|+++|++.|.= .|+ .+ .....++++..+...++|
T Consensus 180 iLlhGPPGTGKTSLCKaLaQkLSI---------R~~------------~~------------y~~~~liEinshsLFSKW 226 (423)
T KOG0744|consen 180 ILLHGPPGTGKTSLCKALAQKLSI---------RTN------------DR------------YYKGQLIEINSHSLFSKW 226 (423)
T ss_pred EEEeCCCCCChhHHHHHHHHhhee---------eec------------Cc------------cccceEEEEehhHHHHHH
Confidence 999999999999999999998851 010 00 124567889999999999
Q ss_pred eeecchhhhhccCCcc---cc--ccccccccCc--eEEecccccCCH---------------HHHHHHHHHHHcCceEEe
Q 006254 199 IGSVDVEESVKTGTTV---FQ--PGLLAEAHRG--VLYIDEINLLDE---------------GISNLLLNVLTEGVNIVE 256 (653)
Q Consensus 199 ~G~~d~~~~~~~g~~~---~~--~Gll~~A~~g--iL~IDEi~~l~~---------------~~~~~Ll~~l~~g~~~v~ 256 (653)
|+.- |+.+ |+ .-++ +-.+. .++||||+.|.. .++|+||.-|+.-.
T Consensus 227 FsES--------gKlV~kmF~kI~ELv-~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK---- 293 (423)
T KOG0744|consen 227 FSES--------GKLVAKMFQKIQELV-EDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLK---- 293 (423)
T ss_pred Hhhh--------hhHHHHHHHHHHHHH-hCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhc----
Confidence 9953 4322 11 0111 11222 456999987621 46899999988643
Q ss_pred eCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHH
Q 006254 257 REGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQI 336 (653)
Q Consensus 257 r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i 336 (653)
.-.+|++++|+| -...++-+|.||-++..++. ||....+.+|++-...-. +...|
T Consensus 294 -------~~~NvliL~TSN-l~~siD~AfVDRADi~~yVG-~Pt~~ai~~IlkscieEL----------------~~~gI 348 (423)
T KOG0744|consen 294 -------RYPNVLILATSN-LTDSIDVAFVDRADIVFYVG-PPTAEAIYEILKSCIEEL----------------ISSGI 348 (423)
T ss_pred -------cCCCEEEEeccc-hHHHHHHHhhhHhhheeecC-CccHHHHHHHHHHHHHHH----------------HhcCe
Confidence 123788999999 66778999999999999998 568888888876322110 00011
Q ss_pred HHHHh----hhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHcCC
Q 006254 337 ILARE----YLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVILP 405 (653)
Q Consensus 337 ~~ar~----~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~h 405 (653)
....+ +...+...+..+..+.++. .-|+ |.|....+=- -++|.+...-.|+.++.-.|+-++...
T Consensus 349 i~~~~~s~~~~~~i~~~~~~~~~~~~~~-~~gL-SGRtlrkLP~--Laha~y~~~~~v~~~~fl~al~ea~~k 417 (423)
T KOG0744|consen 349 ILFHQRSTGVKEFIKYQKALRNILIELS-TVGL-SGRTLRKLPL--LAHAEYFRTFTVDLSNFLLALLEAAKK 417 (423)
T ss_pred eeeeccchhhhHHhHhhHhHHHHHHHHh-hcCC-ccchHhhhhH--HHHHhccCCCccChHHHHHHHHHHHHH
Confidence 11111 1111112222222333322 2333 4555444321 257777777789999987776665543
No 197
>PRK13685 hypothetical protein; Provisional
Probab=99.14 E-value=2.3e-10 Score=122.38 Aligned_cols=91 Identities=23% Similarity=0.367 Sum_probs=82.1
Q ss_pred ccCCceEEEEEeCCCCCCh-----hHHHHHHHHHHHHHHhHcCCCCeEEEEEeecCCcEEEcCCCcCHHHHHHHHhcCCC
Q 006254 558 RKAGALVIFVVDASGSMAL-----NRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPC 632 (653)
Q Consensus 558 ~~~~~~v~~vvD~SgSM~~-----~r~~~ak~a~~~ll~~ay~~rd~v~li~F~~~~a~~~lp~t~~~~~~~~~L~~l~~ 632 (653)
.+.+..++||+|+||||.+ +||..+|.++..++. .+..+|+||||+|++ .+.+++|+|.+...+...|+.+.+
T Consensus 85 ~~~~~~vvlvlD~S~SM~~~D~~p~RL~~ak~~~~~~l~-~l~~~d~vglv~Fa~-~a~~~~p~t~d~~~l~~~l~~l~~ 162 (326)
T PRK13685 85 PRNRAVVMLVIDVSQSMRATDVEPNRLAAAQEAAKQFAD-ELTPGINLGLIAFAG-TATVLVSPTTNREATKNAIDKLQL 162 (326)
T ss_pred CCCCceEEEEEECCccccCCCCCCCHHHHHHHHHHHHHH-hCCCCCeEEEEEEcC-ceeecCCCCCCHHHHHHHHHhCCC
Confidence 3457789999999999965 699999999999995 457899999999975 588999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHh
Q 006254 633 GGGSPLAHGLSMGWAKCG 650 (653)
Q Consensus 633 gG~Tpl~~gl~~a~~~l~ 650 (653)
+|+|++++||..|++.+.
T Consensus 163 ~~~T~~g~al~~A~~~l~ 180 (326)
T PRK13685 163 ADRTATGEAIFTALQAIA 180 (326)
T ss_pred CCCcchHHHHHHHHHHHH
Confidence 999999999999998875
No 198
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.14 E-value=1.3e-09 Score=110.90 Aligned_cols=136 Identities=26% Similarity=0.329 Sum_probs=108.2
Q ss_pred cCceEEecccccCCHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCC-----------CCcccHHHHhhhccc
Q 006254 224 HRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE-----------EGVVREHLLDRIAIN 292 (653)
Q Consensus 224 ~~giL~IDEi~~l~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~-----------eg~l~~aLldRf~~~ 292 (653)
.+|||||||++-|+-+....|..++++.. .-++|.+||.. +.-++-+|+||+-++
T Consensus 288 vpGVLFIDEvHMLDIEcFsFlNrAlE~d~--------------~PiiimaTNrgit~iRGTn~~SphGiP~D~lDR~lII 353 (454)
T KOG2680|consen 288 VPGVLFIDEVHMLDIECFSFLNRALENDM--------------APIIIMATNRGITRIRGTNYRSPHGIPIDLLDRMLII 353 (454)
T ss_pred ccceEEEeeehhhhhHHHHHHHHHhhhcc--------------CcEEEEEcCCceEEeecCCCCCCCCCcHHHhhhhhee
Confidence 47999999999999999999999998765 12566666752 345778999998665
Q ss_pred ccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHH
Q 006254 293 LSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAEL 372 (653)
Q Consensus 293 v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i 372 (653)
... |+..++..+|++. |..-.+|.+.++++++|..+.... |+|-.+
T Consensus 354 -~t~-py~~~d~~~IL~i-----------------------------Rc~EEdv~m~~~A~d~Lt~i~~~t---sLRYai 399 (454)
T KOG2680|consen 354 -STQ-PYTEEDIKKILRI-----------------------------RCQEEDVEMNPDALDLLTKIGEAT---SLRYAI 399 (454)
T ss_pred -ecc-cCcHHHHHHHHHh-----------------------------hhhhhccccCHHHHHHHHHhhhhh---hHHHHH
Confidence 544 7888877777653 333457899999999999886655 789999
Q ss_pred HHHHHHHHHHHHcCCCCccHHHHHHHHHHHcCCCc
Q 006254 373 YAARVAKCLAALEGREKVNVDDLKKAVELVILPRS 407 (653)
Q Consensus 373 ~llr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~hR~ 407 (653)
.++.+|.-.+.-.....|+.+||+.|.+|-|-..+
T Consensus 400 ~Lit~a~~~~~krk~~~v~~~di~r~y~LFlD~~R 434 (454)
T KOG2680|consen 400 HLITAASLVCLKRKGKVVEVDDIERVYRLFLDEKR 434 (454)
T ss_pred HHHHHHHHHHHHhcCceeehhHHHHHHHHHhhhhh
Confidence 99988877777777789999999999999998654
No 199
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.13 E-value=3.5e-10 Score=107.10 Aligned_cols=89 Identities=24% Similarity=0.284 Sum_probs=76.3
Q ss_pred eEEEEEeCCCCCChhHHHHHHHHHHHHHHhHcCCCCeEEEEEeecCCcEEEcCCCcCHHHHHHHHhcCCCCCCCchHHHH
Q 006254 563 LVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPCGGGSPLAHGL 642 (653)
Q Consensus 563 ~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~ay~~rd~v~li~F~~~~a~~~lp~t~~~~~~~~~L~~l~~gG~Tpl~~gl 642 (653)
.|+|+||+||||.+.|+..+|.++..++......+|+|+||.|++......++.+.+...+.+.|..+.+||+|+++.+|
T Consensus 2 ~v~illD~SgSM~~~k~~~a~~~~~~l~~~~~~~~~~v~li~F~~~~~~~~~~~~~~~~~~~~~l~~~~~~ggT~l~~al 81 (152)
T cd01462 2 PVILLVDQSGSMYGAPEEVAKAVALALLRIALAENRDTYLILFDSEFQTKIVDKTDDLEEPVEFLSGVQLGGGTDINKAL 81 (152)
T ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHcCCcEEEEEeCCCceEEecCCcccHHHHHHHHhcCCCCCCcCHHHHH
Confidence 58999999999988889999999999998777679999999998763333455667788888889889999999999999
Q ss_pred HHHHHHHhh
Q 006254 643 SMGWAKCGE 651 (653)
Q Consensus 643 ~~a~~~l~~ 651 (653)
..+++.+.+
T Consensus 82 ~~a~~~l~~ 90 (152)
T cd01462 82 RYALELIER 90 (152)
T ss_pred HHHHHHHHh
Confidence 999998764
No 200
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.13 E-value=6.6e-10 Score=123.28 Aligned_cols=220 Identities=16% Similarity=0.261 Sum_probs=131.4
Q ss_pred CCCCCCCcee-chHHH--HHHHHHhccc----C--CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCC
Q 006254 89 RQFFPLAAVV-GQDAI--KTALLLGAID----R--EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPD 159 (653)
Q Consensus 89 ~~~~~f~~Iv-Gq~~~--k~aL~~~av~----p--~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~ 159 (653)
.+.++|+.++ |.+.. ..++...+-+ + ...+++|+||+|+|||+|++++++.+..
T Consensus 105 ~~~~tFdnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~----------------- 167 (445)
T PRK12422 105 DPLMTFANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRE----------------- 167 (445)
T ss_pred CccccccceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH-----------------
Confidence 3467888776 65432 2232221211 1 1257999999999999999999997631
Q ss_pred cccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCc-cccccccccccCceEEecccccCCH
Q 006254 160 EWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTT-VFQPGLLAEAHRGVLYIDEINLLDE 238 (653)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~-~~~~Gll~~A~~giL~IDEi~~l~~ 238 (653)
....++.++.......+.. ++..+.. .+.. .+ ....+|+||||+.+..
T Consensus 168 ----------------------~~~~v~yi~~~~f~~~~~~------~l~~~~~~~f~~-~~--~~~dvLiIDDiq~l~~ 216 (445)
T PRK12422 168 ----------------------SGGKILYVRSELFTEHLVS------AIRSGEMQRFRQ-FY--RNVDALFIEDIEVFSG 216 (445)
T ss_pred ----------------------cCCCEEEeeHHHHHHHHHH------HHhcchHHHHHH-Hc--ccCCEEEEcchhhhcC
Confidence 0233343433221111111 1211211 1110 11 1346999999999853
Q ss_pred --HHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCC---CcccHHHHhhh--cccccccCCCCHhhHHHHHHHH
Q 006254 239 --GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE---GVVREHLLDRI--AINLSADLPMTFEDRVAAVGIA 311 (653)
Q Consensus 239 --~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e---g~l~~aLldRf--~~~v~l~~p~~~~~r~~I~~~~ 311 (653)
..+..|+..++.-. . .| . .+|.|+|..+ ..+.+.|.+|| ++.+.+. |++.+.+..|++..
T Consensus 217 k~~~qeelf~l~N~l~---~-~~-------k-~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~-~pd~e~r~~iL~~k 283 (445)
T PRK12422 217 KGATQEEFFHTFNSLH---T-EG-------K-LIVISSTCAPQDLKAMEERLISRFEWGIAIPLH-PLTKEGLRSFLERK 283 (445)
T ss_pred ChhhHHHHHHHHHHHH---H-CC-------C-cEEEecCCCHHHHhhhHHHHHhhhcCCeEEecC-CCCHHHHHHHHHHH
Confidence 45666666655321 0 11 1 2444444333 34778999999 5788888 56888888887632
Q ss_pred HHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH---HHHHHHcCCC
Q 006254 312 TQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVA---KCLAALEGRE 388 (653)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~A---ra~Aal~gr~ 388 (653)
.. . ..+.++++++++|+..... +.|..+.++... -+++.+.|+
T Consensus 284 ~~---------------------------~--~~~~l~~evl~~la~~~~~----dir~L~g~l~~l~~~~a~~~~~~~- 329 (445)
T PRK12422 284 AE---------------------------A--LSIRIEETALDFLIEALSS----NVKSLLHALTLLAKRVAYKKLSHQ- 329 (445)
T ss_pred HH---------------------------H--cCCCCCHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHHHHhhCC-
Confidence 11 1 2478999999999875432 467777776655 367777775
Q ss_pred CccHHHHHHHHHHHc
Q 006254 389 KVNVDDLKKAVELVI 403 (653)
Q Consensus 389 ~Vt~eDv~~A~~lvl 403 (653)
.|+.+++++++.-.+
T Consensus 330 ~i~~~~~~~~l~~~~ 344 (445)
T PRK12422 330 LLYVDDIKALLHDVL 344 (445)
T ss_pred CCCHHHHHHHHHHhh
Confidence 689999999987543
No 201
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.12 E-value=8.1e-10 Score=125.01 Aligned_cols=221 Identities=14% Similarity=0.206 Sum_probs=133.3
Q ss_pred CCCCCCCcee-chHH--HHHHHHHhcccCC--CceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccc
Q 006254 89 RQFFPLAAVV-GQDA--IKTALLLGAIDRE--IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWED 163 (653)
Q Consensus 89 ~~~~~f~~Iv-Gq~~--~k~aL~~~av~p~--~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~ 163 (653)
...++|+.++ |... +..++...+-++. ..+++|+|++|+|||+|+++|++.+...
T Consensus 282 ~~~~TFDnFvvG~sN~~A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~-------------------- 341 (617)
T PRK14086 282 NPKYTFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRL-------------------- 341 (617)
T ss_pred CCCCCHhhhcCCCccHHHHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHh--------------------
Confidence 3467888776 4433 2222222222332 2459999999999999999999976310
Q ss_pred cccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCc-cccccccccccCceEEecccccCCH--HH
Q 006254 164 GLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTT-VFQPGLLAEAHRGVLYIDEINLLDE--GI 240 (653)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~-~~~~Gll~~A~~giL~IDEi~~l~~--~~ 240 (653)
..+..++.++.......+.. ++..+.. .+.. .+. +-.+|+||||+.+.. ..
T Consensus 342 -----------------~~g~~V~Yitaeef~~el~~------al~~~~~~~f~~-~y~--~~DLLlIDDIq~l~gke~t 395 (617)
T PRK14086 342 -----------------YPGTRVRYVSSEEFTNEFIN------SIRDGKGDSFRR-RYR--EMDILLVDDIQFLEDKEST 395 (617)
T ss_pred -----------------CCCCeEEEeeHHHHHHHHHH------HHHhccHHHHHH-Hhh--cCCEEEEehhccccCCHHH
Confidence 00223333333221112222 2222211 1110 111 235999999998843 34
Q ss_pred HHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCC---CcccHHHHhhh--cccccccCCCCHhhHHHHHHHHHHHH
Q 006254 241 SNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE---GVVREHLLDRI--AINLSADLPMTFEDRVAAVGIATQFQ 315 (653)
Q Consensus 241 ~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e---g~l~~aLldRf--~~~v~l~~p~~~~~r~~I~~~~~~~~ 315 (653)
+..|+.+++.... + | -.+|.|+|..+ ..+.+.|.+|| ++.+.|. +++.+.|.+|++...
T Consensus 396 qeeLF~l~N~l~e---~-g--------k~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~-~PD~EtR~aIL~kka--- 459 (617)
T PRK14086 396 QEEFFHTFNTLHN---A-N--------KQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQ-PPELETRIAILRKKA--- 459 (617)
T ss_pred HHHHHHHHHHHHh---c-C--------CCEEEecCCChHhhhhccHHHHhhhhcCceEEcC-CCCHHHHHHHHHHHH---
Confidence 5667666664321 0 1 12445666433 34678999999 7777888 568898988876321
Q ss_pred hhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHH
Q 006254 316 ERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDL 395 (653)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv 395 (653)
....+.++++++++|+..... +.|.+..++...-++|.+.++ .|+.+.+
T Consensus 460 --------------------------~~r~l~l~~eVi~yLa~r~~r----nvR~LegaL~rL~a~a~~~~~-~itl~la 508 (617)
T PRK14086 460 --------------------------VQEQLNAPPEVLEFIASRISR----NIRELEGALIRVTAFASLNRQ-PVDLGLT 508 (617)
T ss_pred --------------------------HhcCCCCCHHHHHHHHHhccC----CHHHHHHHHHHHHHHHHhhCC-CCCHHHH
Confidence 113578999999999876432 467777777666667777764 6999999
Q ss_pred HHHHHHH
Q 006254 396 KKAVELV 402 (653)
Q Consensus 396 ~~A~~lv 402 (653)
+++++-.
T Consensus 509 ~~vL~~~ 515 (617)
T PRK14086 509 EIVLRDL 515 (617)
T ss_pred HHHHHHh
Confidence 9888643
No 202
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.11 E-value=3.7e-10 Score=112.78 Aligned_cols=93 Identities=28% Similarity=0.318 Sum_probs=77.0
Q ss_pred hhccCCceEEEEEeCCCCCC------hhHHHHHHHHHHHHHHhHcCCCCeEEEEEeecC-----CcEEEcC---CC----
Q 006254 556 MARKAGALVIFVVDASGSMA------LNRMQNAKGAALKLLAESYTCRDQVSIIPFRGD-----SAEVLLP---PS---- 617 (653)
Q Consensus 556 ~~~~~~~~v~~vvD~SgSM~------~~r~~~ak~a~~~ll~~ay~~rd~v~li~F~~~-----~a~~~lp---~t---- 617 (653)
+..+.+.+++||||+||||. ..||..+|.++..++. .+..+|+|+||+|++. ...+++| .+
T Consensus 15 ~~~~~~~~vv~vlD~SgSM~~~~~~~~~rl~~ak~a~~~~l~-~l~~~~~v~lv~F~~~~~~~~~~~~~~p~~~~~~~~~ 93 (206)
T cd01456 15 TEPQLPPNVAIVLDNSGSMREVDGGGETRLDNAKAALDETAN-ALPDGTRLGLWTFSGDGDNPLDVRVLVPKGCLTAPVN 93 (206)
T ss_pred cccCCCCcEEEEEeCCCCCcCCCCCcchHHHHHHHHHHHHHH-hCCCCceEEEEEecCCCCCCccccccccccccccccC
Confidence 44566889999999999997 3799999999999985 4788999999999763 2333432 22
Q ss_pred ----cCHHHHHHHHhcCC-CCCCCchHHHHHHHHHHH
Q 006254 618 ----RSIAMARKRLERLP-CGGGSPLAHGLSMGWAKC 649 (653)
Q Consensus 618 ----~~~~~~~~~L~~l~-~gG~Tpl~~gl~~a~~~l 649 (653)
.+...+.+.|+.+. ++|+|+|+.||..|.+++
T Consensus 94 ~~~~~~~~~l~~~i~~i~~~~G~T~l~~aL~~a~~~l 130 (206)
T cd01456 94 GFPSAQRSALDAALNSLQTPTGWTPLAAALAEAAAYV 130 (206)
T ss_pred CCCcccHHHHHHHHHhhcCCCCcChHHHHHHHHHHHh
Confidence 36788889999998 999999999999999887
No 203
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1.2e-09 Score=124.92 Aligned_cols=267 Identities=23% Similarity=0.261 Sum_probs=173.2
Q ss_pred CCCCCCceechHHHHHHHHHh------cccCCCceEEEEC----CCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCC
Q 006254 90 QFFPLAAVVGQDAIKTALLLG------AIDREIGGIAISG----RRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPD 159 (653)
Q Consensus 90 ~~~~f~~IvGq~~~k~aL~~~------av~p~~~gVLL~G----ppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~ 159 (653)
.+-+|.++.|++....+.... .+.+-...+.+++ .+|.+++..++.+-....-.... +.
T Consensus 99 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~iv~~~~~~~~~~-----------~~ 167 (647)
T COG1067 99 RPESFSELLGQKAEEKAEYLSYLILLALLGPIEQQIILYGYNALLPGVLYAVAARIVLYEAKILKRS-----------AV 167 (647)
T ss_pred CCcchHHHHHhhhhHHHHHHhhhhHHHhhchhhhhhhhcccccccchhhHHHHHHHHHhhhhcccch-----------hh
Confidence 356788899988766655433 3333345688888 99999999987666553210000 00
Q ss_pred cccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccC------CccccccccccccCceEEeccc
Q 006254 160 EWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTG------TTVFQPGLLAEAHRGVLYIDEI 233 (653)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g------~~~~~~Gll~~A~~giL~IDEi 233 (653)
...+.+... ......||+ -......+.|||.+ +...+.| ....+||.+.+||+|||||||+
T Consensus 168 ~~~~~~~~~----------~~~~~~p~v-~a~~~~~~~LlG~V--r~~~~qG~l~~~~~~~i~pGaVHkAngGVLiIdei 234 (647)
T COG1067 168 SVPKNFVEL----------SPLDGAPVV-FATGAIADQLLGSV--RHDPYQGGLGTTGHIRVKPGAVHKANGGVLIIDEI 234 (647)
T ss_pred hhhhhhhhh----------ccccCCcEE-ecCCCChhhcceeE--EEcCCCCccCCCCcccccCcccccccCcEEEEEhh
Confidence 000000000 001235555 44556778899975 3444443 6678899999999999999999
Q ss_pred ccCCHHHHHHHHHHHHcCceEE-----eeCCee---EEeecCcEEEEEecCCC----CcccHHHHhhhccccccc--CCC
Q 006254 234 NLLDEGISNLLLNVLTEGVNIV-----EREGIS---FKHPCKPLLIATYNPEE----GVVREHLLDRIAINLSAD--LPM 299 (653)
Q Consensus 234 ~~l~~~~~~~Ll~~l~~g~~~v-----~r~G~s---~~~p~~~~lIattNp~e----g~l~~aLldRf~~~v~l~--~p~ 299 (653)
+.|....++.+|.+|.++...+ ...|.. -.+|++|.+|+..|++. +.+.+.+++=|++.+++. .|.
T Consensus 235 ~lL~~~~~w~~LKa~~~k~~~~~~~~~~s~~~~v~~e~vP~d~klI~~Gn~~~l~~l~~~~~~r~~g~~y~ae~~~~m~~ 314 (647)
T COG1067 235 GLLAQPLQWKLLKALLDKEQPIWGSSEPSSGAPVRPESVPLDLKLILAGNREDLEDLHEPDRSRIEGFGYEAEFEDTMPI 314 (647)
T ss_pred hhhCcHHHHHHHHHHHhccccccCcCccccCcccCCCCcccceEEEeeCCHHHHHhhcccCHHHHhhcceEEEEcCCCCC
Confidence 9999999999999998874221 111222 23789999999999754 345555555566655666 333
Q ss_pred CHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcC------CCCcchHHH
Q 006254 300 TFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGG------CQGHRAELY 373 (653)
Q Consensus 300 ~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~------i~s~R~~i~ 373 (653)
..+.|...+..... .+.. ...+ ..++.+++..|..++.+.. ....|....
T Consensus 315 ~~~nr~k~~~~~~q---------------------~v~~-d~~i--p~~~~~Av~~li~~a~R~Ag~~~~Ltl~~rdl~~ 370 (647)
T COG1067 315 TDANRSKLVQFYVQ---------------------ELAR-DGNI--PHLDKDAVEELIREAARRAGDQNKLTLRLRDLGN 370 (647)
T ss_pred ChHHHHHHHHHHHH---------------------HHHh-cCCC--CCCCHHHHHHHHHHHHHhccccceeccCHHHHHH
Confidence 45555555442211 1111 1122 3688888888888776642 246788899
Q ss_pred HHHHHHHHHHHcCCCCccHHHHHHHHHHHcC
Q 006254 374 AARVAKCLAALEGREKVNVDDLKKAVELVIL 404 (653)
Q Consensus 374 llr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~ 404 (653)
+++.|..+|..+|+..|+.+||++|+.....
T Consensus 371 lv~~A~~ia~~~~~~~I~ae~Ve~a~~~~~~ 401 (647)
T COG1067 371 LVREAGDIAVSEGRKLITAEDVEEALQKREL 401 (647)
T ss_pred HHHHhhHHHhcCCcccCcHHHHHHHHHhhhh
Confidence 9999999999999999999999999986433
No 204
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=99.09 E-value=7.5e-10 Score=106.36 Aligned_cols=89 Identities=27% Similarity=0.495 Sum_probs=76.4
Q ss_pred ceEEEEEeCCCCCChhHHHHHHHHHHHHHHhHcCCCCeEEEEEeecCCcEEEcCCCc--CHHHHHHHHhcCCCCCCCchH
Q 006254 562 ALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSR--SIAMARKRLERLPCGGGSPLA 639 (653)
Q Consensus 562 ~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~ay~~rd~v~li~F~~~~a~~~lp~t~--~~~~~~~~L~~l~~gG~Tpl~ 639 (653)
.+++||||+||||.+.++..+|.++..++ ..+...|+|+||.|++ ....++|++. +...+...|..+.++|+|++.
T Consensus 1 ~~~~~vlD~S~SM~~~~~~~~k~a~~~~~-~~l~~~~~v~li~f~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~g~T~~~ 78 (170)
T cd01465 1 LNLVFVIDRSGSMDGPKLPLVKSALKLLV-DQLRPDDRLAIVTYDG-AAETVLPATPVRDKAAILAAIDRLTAGGSTAGG 78 (170)
T ss_pred CcEEEEEECCCCCCChhHHHHHHHHHHHH-HhCCCCCEEEEEEecC-CccEEecCcccchHHHHHHHHHcCCCCCCCCHH
Confidence 36899999999998878999999888776 5678899999999975 5777888764 677788889999999999999
Q ss_pred HHHHHHHHHHhhc
Q 006254 640 HGLSMGWAKCGEE 652 (653)
Q Consensus 640 ~gl~~a~~~l~~~ 652 (653)
.||..|++.+.+.
T Consensus 79 ~al~~a~~~~~~~ 91 (170)
T cd01465 79 AGIQLGYQEAQKH 91 (170)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988653
No 205
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.09 E-value=2.6e-09 Score=107.78 Aligned_cols=189 Identities=22% Similarity=0.246 Sum_probs=120.6
Q ss_pred CCCCCCCceechHHHHHHHHHh---ccc-CCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccc
Q 006254 89 RQFFPLAAVVGQDAIKTALLLG---AID-REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDG 164 (653)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~~~---av~-p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~ 164 (653)
..++++++++|-+..|+.|..+ .+. -...+|||+|++|||||+++|++......
T Consensus 21 ~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~---------------------- 78 (249)
T PF05673_consen 21 PDPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYAD---------------------- 78 (249)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhh----------------------
Confidence 3467899999999999998432 221 13567999999999999999999987642
Q ss_pred ccccccccccccccccccCCCeEeCCCCCccc--ceeeecchhhhhccCCccccccccccccCceEEecccccCCH-HHH
Q 006254 165 LDEKAEYDTAGNLKTQIARSPFVQIPLGVTED--RLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDE-GIS 241 (653)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~--~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~-~~~ 241 (653)
....+|+++..-..+ .++. .+. ..| ..=|||+|++.-=.. ..-
T Consensus 79 -----------------~GLRlIev~k~~L~~l~~l~~------~l~-----~~~------~kFIlf~DDLsFe~~d~~y 124 (249)
T PF05673_consen 79 -----------------QGLRLIEVSKEDLGDLPELLD------LLR-----DRP------YKFILFCDDLSFEEGDTEY 124 (249)
T ss_pred -----------------cCceEEEECHHHhccHHHHHH------HHh-----cCC------CCEEEEecCCCCCCCcHHH
Confidence 134556555432110 1111 111 111 234999999764333 334
Q ss_pred HHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCC----------C----Cccc--------HHHHhhhcccccccCCC
Q 006254 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE----------E----GVVR--------EHLLDRIAINLSADLPM 299 (653)
Q Consensus 242 ~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~----------e----g~l~--------~aLldRf~~~v~l~~p~ 299 (653)
..|-.+|+-| -...|.+++|.+|+|.. + +++. -.|.|||++.|.+. |+
T Consensus 125 k~LKs~LeGg---------le~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~-~~ 194 (249)
T PF05673_consen 125 KALKSVLEGG---------LEARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFY-PP 194 (249)
T ss_pred HHHHHHhcCc---------cccCCCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEec-CC
Confidence 5555555533 23468899999999961 1 1222 26889999999988 66
Q ss_pred CHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCC-HHHHHHHHHHHHhcCCCCcchHH
Q 006254 300 TFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIG-REQLKYLVMEALRGGCQGHRAEL 372 (653)
Q Consensus 300 ~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is-~~~l~~l~~~~~~~~i~s~R~~i 372 (653)
+.++=.+|++.. .....+.++ ++......+.+...|..|.|.+-
T Consensus 195 ~q~~YL~IV~~~-----------------------------~~~~g~~~~~e~l~~~Al~wa~~rg~RSGRtA~ 239 (249)
T PF05673_consen 195 DQEEYLAIVRHY-----------------------------AERYGLELDEEELRQEALQWALRRGGRSGRTAR 239 (249)
T ss_pred CHHHHHHHHHHH-----------------------------HHHcCCCCCHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 888766666521 111246677 45556777778888887777433
No 206
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=7.1e-11 Score=127.67 Aligned_cols=141 Identities=26% Similarity=0.407 Sum_probs=89.9
Q ss_pred CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeEeCCCCCc
Q 006254 115 EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVT 194 (653)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~ 194 (653)
+..|+|||||||||||.+||.|...|... ....|.-| -.
T Consensus 255 HVKGiLLyGPPGTGKTLiARqIGkMLNAr---------------------------------------ePKIVNGP--eI 293 (744)
T KOG0741|consen 255 HVKGILLYGPPGTGKTLIARQIGKMLNAR---------------------------------------EPKIVNGP--EI 293 (744)
T ss_pred ceeeEEEECCCCCChhHHHHHHHHHhcCC---------------------------------------CCcccCcH--HH
Confidence 34679999999999999999999998621 11112111 22
Q ss_pred ccceeeec--chhhhhccCCccccccccccccCceEEecccccC-------------CHHHHHHHHHHHHcCceEEeeCC
Q 006254 195 EDRLIGSV--DVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLL-------------DEGISNLLLNVLTEGVNIVEREG 259 (653)
Q Consensus 195 ~~~l~G~~--d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l-------------~~~~~~~Ll~~l~~g~~~v~r~G 259 (653)
-++++|.- ++ +.+|..+...+.-+=+...=.|+++|||+.. .+.++|.||.-|+ |+-.+
T Consensus 294 L~KYVGeSE~Nv-R~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmD-GVeqL---- 367 (744)
T KOG0741|consen 294 LNKYVGESEENV-RKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMD-GVEQL---- 367 (744)
T ss_pred HHHhhcccHHHH-HHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcc-cHHhh----
Confidence 23455532 11 1111111111100001111139999999864 5678999999887 43211
Q ss_pred eeEEeecCcEEEEEecCCCCcccHHHHh--hhcccccccCCCCHhhHHHHHHH
Q 006254 260 ISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPMTFEDRVAAVGI 310 (653)
Q Consensus 260 ~s~~~p~~~~lIattNp~eg~l~~aLld--Rf~~~v~l~~p~~~~~r~~I~~~ 310 (653)
.++.+||-|| ...-++++||+ ||.+.++|..| |...|.+|++.
T Consensus 368 ------NNILVIGMTN-R~DlIDEALLRPGRlEVqmEIsLP-DE~gRlQIl~I 412 (744)
T KOG0741|consen 368 ------NNILVIGMTN-RKDLIDEALLRPGRLEVQMEISLP-DEKGRLQILKI 412 (744)
T ss_pred ------hcEEEEeccC-chhhHHHHhcCCCceEEEEEEeCC-CccCceEEEEh
Confidence 2678999999 56667788887 99999999975 88889888764
No 207
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.08 E-value=2.1e-09 Score=126.78 Aligned_cols=210 Identities=21% Similarity=0.171 Sum_probs=144.6
Q ss_pred CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeEeCC--CC
Q 006254 115 EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIP--LG 192 (653)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~--~~ 192 (653)
..-+|||.||+.+|||.+...++...+ ..||.|. .+
T Consensus 887 ~~fP~LiQGpTSSGKTSMI~yla~~tg------------------------------------------hkfVRINNHEH 924 (4600)
T COG5271 887 SNFPLLIQGPTSSGKTSMILYLARETG------------------------------------------HKFVRINNHEH 924 (4600)
T ss_pred cCCcEEEecCCCCCcchHHHHHHHHhC------------------------------------------ccEEEecCccc
Confidence 457899999999999999999999763 4677763 44
Q ss_pred CcccceeeecchhhhhccCCccccccccccc--cCceEEecccccCCHHHHHHHHHHHHcCceEEeeCCeeEEeec-CcE
Q 006254 193 VTEDRLIGSVDVEESVKTGTTVFQPGLLAEA--HRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPC-KPL 269 (653)
Q Consensus 193 ~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A--~~giL~IDEi~~l~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~-~~~ 269 (653)
+.-.+++|++ .+-..|...|+.|.|..| +|-.+++||+|+.+.+++.+|.+.+++.+-.+-.+-..+.+|. +|+
T Consensus 925 TdlqeYiGTy---vTdd~G~lsFkEGvLVeAlR~GyWIVLDELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~ 1001 (4600)
T COG5271 925 TDLQEYIGTY---VTDDDGSLSFKEGVLVEALRRGYWIVLDELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFR 1001 (4600)
T ss_pred chHHHHhhce---eecCCCceeeehhHHHHHHhcCcEEEeeccccCcHHHHHHHHHhhccccceecCCcceeeccCCCee
Confidence 5556788875 344568889999999888 6779999999999999999999999987766666666666654 699
Q ss_pred EEEEecCCCC-----cccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhc
Q 006254 270 LIATYNPEEG-----VVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLK 344 (653)
Q Consensus 270 lIattNp~eg-----~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~ 344 (653)
++||-||..+ .|+.+++.||--. .+.. ...++.+.|+.-
T Consensus 1002 lFATQNppg~YgGRK~LSrAFRNRFlE~-hFdd-ipedEle~ILh~---------------------------------- 1045 (4600)
T COG5271 1002 LFATQNPPGGYGGRKGLSRAFRNRFLEM-HFDD-IPEDELEEILHG---------------------------------- 1045 (4600)
T ss_pred EEeecCCCccccchHHHHHHHHhhhHhh-hccc-CcHHHHHHHHhc----------------------------------
Confidence 9999997543 4899999999544 3332 234445555431
Q ss_pred ccCCCHHHHHHHHHHHHhcCCCCcchHHH-------HHHHHHHHHHHcCCCCccHHHHHHHHHHHcCCCcc
Q 006254 345 DVAIGREQLKYLVMEALRGGCQGHRAELY-------AARVAKCLAALEGREKVNVDDLKKAVELVILPRSI 408 (653)
Q Consensus 345 ~v~is~~~l~~l~~~~~~~~i~s~R~~i~-------llr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~hR~~ 408 (653)
...+.+.--..+++....+ +.|+.+. ..-+-|.+=.|.||..|.-+.+..---+.|..|.+
T Consensus 1046 rc~iapSyakKiVeVyr~L---s~rRs~~rifeqknsfaTLRDLFrWa~R~avgy~qla~~GymllaER~R 1113 (4600)
T COG5271 1046 RCEIAPSYAKKIVEVYRGL---SSRRSINRIFEQKNSFATLRDLFRWAGRIAVGYDQLAFLGYMLLAERQR 1113 (4600)
T ss_pred cCccCHHHHHHHHHHHHHh---hhhhhHHHHHHhhhhHHHHHHHHHHhccccchHHHHHHhhHHHHHHHhc
Confidence 2334444444444444433 2233322 23344555566777777777776655555666654
No 208
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=4.1e-10 Score=131.92 Aligned_cols=187 Identities=23% Similarity=0.269 Sum_probs=128.4
Q ss_pred CCCCCCceechHHHHHHHHHhc----ccC---------CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCC
Q 006254 90 QFFPLAAVVGQDAIKTALLLGA----IDR---------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT 156 (653)
Q Consensus 90 ~~~~f~~IvGq~~~k~aL~~~a----v~p---------~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~ 156 (653)
....|++|-|.+.++..|.... .+| ...|||+.||||||||.+||+++.....-
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~------------- 326 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRG------------- 326 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhccc-------------
Confidence 3568999999999888874322 233 13679999999999999999999976421
Q ss_pred CCCcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccc---cCceEEeccc
Q 006254 157 CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEI 233 (653)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~IDEi 233 (653)
..+..|+.-....-.+.|+|.. ++-+. -++.+| ...|+|+|||
T Consensus 327 ------------------------~~kisffmrkgaD~lskwvgEa--ERqlr--------llFeeA~k~qPSIIffdeI 372 (1080)
T KOG0732|consen 327 ------------------------NRKISFFMRKGADCLSKWVGEA--ERQLR--------LLFEEAQKTQPSIIFFDEI 372 (1080)
T ss_pred ------------------------ccccchhhhcCchhhccccCcH--HHHHH--------HHHHHHhccCceEEecccc
Confidence 0134455555556667889963 23222 123333 3469999999
Q ss_pred ccCCH-----------HHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHh--hhcccccccCCCC
Q 006254 234 NLLDE-----------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPMT 300 (653)
Q Consensus 234 ~~l~~-----------~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLld--Rf~~~v~l~~p~~ 300 (653)
+-|.+ .++..||.+|+.-. -...++|||||| .+..++++|++ ||+..+++.+| +
T Consensus 373 dGlapvrSskqEqih~SIvSTLLaLmdGld-----------sRgqVvvigATn-Rpda~dpaLRRPgrfdref~f~lp-~ 439 (1080)
T KOG0732|consen 373 DGLAPVRSSKQEQIHASIVSTLLALMDGLD-----------SRGQVVVIGATN-RPDAIDPALRRPGRFDREFYFPLP-D 439 (1080)
T ss_pred ccccccccchHHHhhhhHHHHHHHhccCCC-----------CCCceEEEcccC-CccccchhhcCCcccceeEeeeCC-c
Confidence 95533 56788888887322 112579999999 78888999965 89999899875 7
Q ss_pred HhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCC
Q 006254 301 FEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGC 365 (653)
Q Consensus 301 ~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i 365 (653)
.+.|..|+.+. -+.|. -.++...+..|++.+..++.
T Consensus 440 ~~ar~~Il~Ih---------------------------trkw~--~~i~~~l~~~la~~t~gy~g 475 (1080)
T KOG0732|consen 440 VDARAKILDIH---------------------------TRKWE--PPISRELLLWLAEETSGYGG 475 (1080)
T ss_pred hHHHHHHHHHh---------------------------ccCCC--CCCCHHHHHHHHHhccccch
Confidence 88888887642 13444 25777777777776655543
No 209
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.07 E-value=9.8e-10 Score=122.05 Aligned_cols=223 Identities=17% Similarity=0.185 Sum_probs=130.5
Q ss_pred CCCCCCCcee-chHHH--HHHHHHhcccCC-CceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccc
Q 006254 89 RQFFPLAAVV-GQDAI--KTALLLGAIDRE-IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDG 164 (653)
Q Consensus 89 ~~~~~f~~Iv-Gq~~~--k~aL~~~av~p~-~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~ 164 (653)
.+.++|+.++ |.+.. ..++...+-+|+ ..+++|+||+|+|||+|++++++.+...
T Consensus 99 ~~~~tFdnFv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~--------------------- 157 (440)
T PRK14088 99 NPDYTFENFVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQN--------------------- 157 (440)
T ss_pred CCCCcccccccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHh---------------------
Confidence 3467888776 65432 222222122343 3579999999999999999999976310
Q ss_pred ccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCc-cccccccccccCceEEecccccCC--HHHH
Q 006254 165 LDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTT-VFQPGLLAEAHRGVLYIDEINLLD--EGIS 241 (653)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~-~~~~Gll~~A~~giL~IDEi~~l~--~~~~ 241 (653)
..+..++.++.......+.. ++..+.. .+..-+ .....+|+|||++.+. ...+
T Consensus 158 ----------------~~~~~v~yi~~~~f~~~~~~------~~~~~~~~~f~~~~--~~~~dvLlIDDi~~l~~~~~~q 213 (440)
T PRK14088 158 ----------------EPDLRVMYITSEKFLNDLVD------SMKEGKLNEFREKY--RKKVDVLLIDDVQFLIGKTGVQ 213 (440)
T ss_pred ----------------CCCCeEEEEEHHHHHHHHHH------HHhcccHHHHHHHH--HhcCCEEEEechhhhcCcHHHH
Confidence 00122233322211111111 1211111 011000 0124599999999774 2345
Q ss_pred HHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCC---cccHHHHhhh--cccccccCCCCHhhHHHHHHHHHHHHh
Q 006254 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG---VVREHLLDRI--AINLSADLPMTFEDRVAAVGIATQFQE 316 (653)
Q Consensus 242 ~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg---~l~~aLldRf--~~~v~l~~p~~~~~r~~I~~~~~~~~~ 316 (653)
..|+..++.-. ..| . .+|.|+|..+. .+.+.|.+|| ++.+.+. |++.+.|.+|++....
T Consensus 214 ~elf~~~n~l~----~~~-------k-~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~-~pd~e~r~~IL~~~~~--- 277 (440)
T PRK14088 214 TELFHTFNELH----DSG-------K-QIVICSDREPQKLSEFQDRLVSRFQMGLVAKLE-PPDEETRKKIARKMLE--- 277 (440)
T ss_pred HHHHHHHHHHH----HcC-------C-eEEEECCCCHHHHHHHHHHHhhHHhcCceEeeC-CCCHHHHHHHHHHHHH---
Confidence 55666554321 001 1 24444443333 3668899999 4566777 6789999888763211
Q ss_pred hhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHH
Q 006254 317 RSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLK 396 (653)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~ 396 (653)
...+.++++++++|++.+.. +.|....++....+.+.+.++ .||.+.++
T Consensus 278 --------------------------~~~~~l~~ev~~~Ia~~~~~----~~R~L~g~l~~l~~~~~~~~~-~it~~~a~ 326 (440)
T PRK14088 278 --------------------------IEHGELPEEVLNFVAENVDD----NLRRLRGAIIKLLVYKETTGE-EVDLKEAI 326 (440)
T ss_pred --------------------------hcCCCCCHHHHHHHHhcccc----CHHHHHHHHHHHHHHHHHhCC-CCCHHHHH
Confidence 12578999999999876532 578888887777778888775 69999999
Q ss_pred HHHHHHc
Q 006254 397 KAVELVI 403 (653)
Q Consensus 397 ~A~~lvl 403 (653)
+++.-.+
T Consensus 327 ~~L~~~~ 333 (440)
T PRK14088 327 LLLKDFI 333 (440)
T ss_pred HHHHHHh
Confidence 9987543
No 210
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.07 E-value=2.9e-09 Score=114.66 Aligned_cols=188 Identities=16% Similarity=0.209 Sum_probs=101.7
Q ss_pred CCCCCCCceechHHHHHHHHHhcccCCCc-eEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccc
Q 006254 89 RQFFPLAAVVGQDAIKTALLLGAIDREIG-GIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDE 167 (653)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~~~av~p~~~-gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~ 167 (653)
..|..|+.|+||++++..|..+.-..... .+||+||+|+|||++|+.++..+.--......+..+ .++..-|..|..
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~--~~~~~~c~~c~~ 94 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETL--ADPDPASPVWRQ 94 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcccc--CCCCCCCHHHHH
Confidence 45677999999999999997765544333 499999999999999999999874100000000000 001111222221
Q ss_pred cccccccccccccccCCCeEeC--CCCCccc---ceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHH
Q 006254 168 KAEYDTAGNLKTQIARSPFVQI--PLGVTED---RLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISN 242 (653)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~fv~l--~~~~~~~---~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~ 242 (653)
... + ....|..+ +...... ..++ +|--+.+.. .+... -.....-|++|||++.|+...+|
T Consensus 95 i~~----~------~hPdl~~l~~~~~~~~~~~~~~I~-vd~iR~l~~---~l~~~-~~~g~~rVviIDeAd~l~~~aan 159 (351)
T PRK09112 95 IAQ----G------AHPNLLHITRPFDEKTGKFKTAIT-VDEIRRVGH---FLSQT-SGDGNWRIVIIDPADDMNRNAAN 159 (351)
T ss_pred HHc----C------CCCCEEEeecccccccccccccCC-HHHHHHHHH---Hhhhc-cccCCceEEEEEchhhcCHHHHH
Confidence 100 0 01112211 1111000 0111 110000000 00000 01112349999999999999999
Q ss_pred HHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHH
Q 006254 243 LLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVG 309 (653)
Q Consensus 243 ~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~ 309 (653)
.||..+++.. .+..+|..++ .++.+.+.+++|+. .+.+. |++.++-.+++.
T Consensus 160 aLLk~LEEpp-------------~~~~fiLit~-~~~~llptIrSRc~-~i~l~-pl~~~~~~~~L~ 210 (351)
T PRK09112 160 AILKTLEEPP-------------ARALFILISH-SSGRLLPTIRSRCQ-PISLK-PLDDDELKKALS 210 (351)
T ss_pred HHHHHHhcCC-------------CCceEEEEEC-ChhhccHHHHhhcc-EEEec-CCCHHHHHHHHH
Confidence 9999998743 2333444444 45677799999995 54777 567665555443
No 211
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.06 E-value=1.2e-09 Score=121.45 Aligned_cols=223 Identities=9% Similarity=0.120 Sum_probs=133.2
Q ss_pred CCCCCcee-chHH--HHHHHHHhcccCC--CceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccc
Q 006254 91 FFPLAAVV-GQDA--IKTALLLGAIDRE--IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL 165 (653)
Q Consensus 91 ~~~f~~Iv-Gq~~--~k~aL~~~av~p~--~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~ 165 (653)
.++|+.++ |.+. +..++...+-+|+ ..+++|+|++|+|||+|++++++.+...
T Consensus 111 ~~tFdnFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~---------------------- 168 (450)
T PRK14087 111 ENTFENFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESN---------------------- 168 (450)
T ss_pred ccchhcccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHh----------------------
Confidence 47887765 5432 2333322233443 3579999999999999999999865310
Q ss_pred cccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccc-cccCceEEecccccCC--HHHHH
Q 006254 166 DEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLA-EAHRGVLYIDEINLLD--EGISN 242 (653)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~-~A~~giL~IDEi~~l~--~~~~~ 242 (653)
..+..++.++.......+...+ ..+..... -... ..+..+|+||||+.+. ...++
T Consensus 169 ---------------~~~~~v~yv~~~~f~~~~~~~l------~~~~~~~~-~~~~~~~~~dvLiIDDiq~l~~k~~~~e 226 (450)
T PRK14087 169 ---------------FSDLKVSYMSGDEFARKAVDIL------QKTHKEIE-QFKNEICQNDVLIIDDVQFLSYKEKTNE 226 (450)
T ss_pred ---------------CCCCeEEEEEHHHHHHHHHHHH------HHhhhHHH-HHHHHhccCCEEEEeccccccCCHHHHH
Confidence 0022333333222111222111 11000000 0000 0123599999999886 56777
Q ss_pred HHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCC---CcccHHHHhhh--cccccccCCCCHhhHHHHHHHHHHHHhh
Q 006254 243 LLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE---GVVREHLLDRI--AINLSADLPMTFEDRVAAVGIATQFQER 317 (653)
Q Consensus 243 ~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e---g~l~~aLldRf--~~~v~l~~p~~~~~r~~I~~~~~~~~~~ 317 (653)
.|+..++.... . | -.+|.|+|..+ ..+.+.|.+|| ++.+.+. |++.+.+.+|++.....
T Consensus 227 ~lf~l~N~~~~---~-~--------k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~-~pd~e~r~~iL~~~~~~--- 290 (450)
T PRK14087 227 IFFTIFNNFIE---N-D--------KQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQ-KLDNKTATAIIKKEIKN--- 290 (450)
T ss_pred HHHHHHHHHHH---c-C--------CcEEEECCCCHHHHhhccHHHHHHHhCCceeccC-CcCHHHHHHHHHHHHHh---
Confidence 77777765321 0 1 13566666333 24678999999 5777887 67999999988743211
Q ss_pred hhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcC-CCCccHHHHH
Q 006254 318 SNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEG-REKVNVDDLK 396 (653)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~g-r~~Vt~eDv~ 396 (653)
+ .+ .+.++++++++|++.+.. ..|..+.++......+.... ...|+.+.++
T Consensus 291 ----------------------~-gl-~~~l~~evl~~Ia~~~~g----d~R~L~gaL~~l~~~a~~~~~~~~it~~~v~ 342 (450)
T PRK14087 291 ----------------------Q-NI-KQEVTEEAINFISNYYSD----DVRKIKGSVSRLNFWSQQNPEEKIITIEIVS 342 (450)
T ss_pred ----------------------c-CC-CCCCCHHHHHHHHHccCC----CHHHHHHHHHHHHHHHhcccCCCCCCHHHHH
Confidence 1 11 237999999999876542 57999988877665555552 2579999999
Q ss_pred HHHHH
Q 006254 397 KAVEL 401 (653)
Q Consensus 397 ~A~~l 401 (653)
+++.-
T Consensus 343 ~~l~~ 347 (450)
T PRK14087 343 DLFRD 347 (450)
T ss_pred HHHhh
Confidence 98863
No 212
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=99.06 E-value=1e-09 Score=105.38 Aligned_cols=89 Identities=19% Similarity=0.239 Sum_probs=76.7
Q ss_pred ceEEEEEeCCCCCChhHHHHHHHHHHHHHHhHc--CCCCeEEEEEeecCCcEEEcCCC--cCHHHHHHHHhcCCC-CCCC
Q 006254 562 ALVIFVVDASGSMALNRMQNAKGAALKLLAESY--TCRDQVSIIPFRGDSAEVLLPPS--RSIAMARKRLERLPC-GGGS 636 (653)
Q Consensus 562 ~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~ay--~~rd~v~li~F~~~~a~~~lp~t--~~~~~~~~~L~~l~~-gG~T 636 (653)
.+|+||+|.||||...++..+|.++..++...- ..+++||||.|. +.+.+.+|++ .+...+...|..++. ||+|
T Consensus 1 ~Dvv~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~~~~giv~Fs-~~~~~~~~~~~~~~~~~~~~~l~~l~~~~g~T 79 (164)
T cd01472 1 ADIVFLVDGSESIGLSNFNLVKDFVKRVVERLDIGPDGVRVGVVQYS-DDPRTEFYLNTYRSKDDVLEAVKNLRYIGGGT 79 (164)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhcccCCCCeEEEEEEEc-CceeEEEecCCCCCHHHHHHHHHhCcCCCCCc
Confidence 368999999999998899999999999885532 357899999997 4588888988 788889999999986 8999
Q ss_pred chHHHHHHHHHHHhh
Q 006254 637 PLAHGLSMGWAKCGE 651 (653)
Q Consensus 637 pl~~gl~~a~~~l~~ 651 (653)
+++.||..|.+.+..
T Consensus 80 ~~~~al~~a~~~l~~ 94 (164)
T cd01472 80 NTGKALKYVRENLFT 94 (164)
T ss_pred hHHHHHHHHHHHhCC
Confidence 999999999998864
No 213
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=99.06 E-value=9.4e-10 Score=106.81 Aligned_cols=89 Identities=28% Similarity=0.296 Sum_probs=71.4
Q ss_pred eEEEEEeCCCCCCh-hHHHHHHHHHHHHHHhHcCCCCeEEEEEeecCC-----cEEEc--CCCcC-HHHHHHHHhcCCCC
Q 006254 563 LVIFVVDASGSMAL-NRMQNAKGAALKLLAESYTCRDQVSIIPFRGDS-----AEVLL--PPSRS-IAMARKRLERLPCG 633 (653)
Q Consensus 563 ~v~~vvD~SgSM~~-~r~~~ak~a~~~ll~~ay~~rd~v~li~F~~~~-----a~~~l--p~t~~-~~~~~~~L~~l~~g 633 (653)
.|+||||+||||.+ +|+..||.++..|+......+|+++|++|.+.. ..++. +.+.. ...+...|..+.++
T Consensus 2 ~v~~llD~SgSM~~~~kl~~ak~a~~~l~~~l~~~~d~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (174)
T cd01454 2 AVTLLLDLSGSMRSDRRIDVAKKAAVLLAEALEACGVPHAILGFTTDAGGRERVRWIKIKDFDESLHERARKRLAALSPG 81 (174)
T ss_pred EEEEEEECCCCCCCCcHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCccceEEEEecCcccccchhHHHHHHccCCC
Confidence 58999999999987 699999999999886655569999999997651 13333 22223 24577889999999
Q ss_pred CCCchHHHHHHHHHHHhh
Q 006254 634 GGSPLAHGLSMGWAKCGE 651 (653)
Q Consensus 634 G~Tpl~~gl~~a~~~l~~ 651 (653)
|+|+++.||..|++.+.+
T Consensus 82 g~T~~~~al~~a~~~l~~ 99 (174)
T cd01454 82 GNTRDGAAIRHAAERLLA 99 (174)
T ss_pred CCCcHHHHHHHHHHHHhc
Confidence 999999999999999864
No 214
>PRK05642 DNA replication initiation factor; Validated
Probab=99.05 E-value=3.1e-09 Score=108.41 Aligned_cols=129 Identities=17% Similarity=0.281 Sum_probs=84.4
Q ss_pred ceEEecccccCC--HHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecC-CCCc-ccHHHHhhh--cccccccCCC
Q 006254 226 GVLYIDEINLLD--EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP-EEGV-VREHLLDRI--AINLSADLPM 299 (653)
Q Consensus 226 giL~IDEi~~l~--~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp-~eg~-l~~aLldRf--~~~v~l~~p~ 299 (653)
.+|+||+|+.+. +..+..|+..++.-. ++ | ..+||+++.+ .+.. +.++|.+|| ++.+.+. |+
T Consensus 99 d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~---~~-g-------~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~-~~ 166 (234)
T PRK05642 99 ELVCLDDLDVIAGKADWEEALFHLFNRLR---DS-G-------RRLLLAASKSPRELPIKLPDLKSRLTLALVFQMR-GL 166 (234)
T ss_pred CEEEEechhhhcCChHHHHHHHHHHHHHH---hc-C-------CEEEEeCCCCHHHcCccCccHHHHHhcCeeeecC-CC
Confidence 489999999874 345566777776421 10 1 2345555442 2333 469999999 4666777 55
Q ss_pred CHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 006254 300 TFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAK 379 (653)
Q Consensus 300 ~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ar 379 (653)
+.+.+..+++.. +.. ..+.++++++++|++.+.. +.|..+.++..--
T Consensus 167 ~~e~~~~il~~k---------------------------a~~--~~~~l~~ev~~~L~~~~~~----d~r~l~~~l~~l~ 213 (234)
T PRK05642 167 SDEDKLRALQLR---------------------------ASR--RGLHLTDEVGHFILTRGTR----SMSALFDLLERLD 213 (234)
T ss_pred CHHHHHHHHHHH---------------------------HHH--cCCCCCHHHHHHHHHhcCC----CHHHHHHHHHHHH
Confidence 777787776521 111 1378999999999876543 5788888877665
Q ss_pred HHHHHcCCCCccHHHHHHHHH
Q 006254 380 CLAALEGREKVNVDDLKKAVE 400 (653)
Q Consensus 380 a~Aal~gr~~Vt~eDv~~A~~ 400 (653)
. +++.....||..-+++++.
T Consensus 214 ~-~~l~~~~~it~~~~~~~L~ 233 (234)
T PRK05642 214 Q-ASLQAQRKLTIPFLKETLG 233 (234)
T ss_pred H-HHHHcCCcCCHHHHHHHhc
Confidence 3 5555445699988888764
No 215
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.01 E-value=3.3e-09 Score=114.84 Aligned_cols=192 Identities=22% Similarity=0.228 Sum_probs=103.7
Q ss_pred CCCCCCCceechHHHHHHHHHhcccCCCce-EEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCC--CCcccccc
Q 006254 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTC--PDEWEDGL 165 (653)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~~~av~p~~~g-VLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~--~~~~~~~~ 165 (653)
.+|..|++|+||+.+++.|.-+.......| +||+||+|+||+++|.++++.+--.......++.|.+.+ ...-|..|
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c 92 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVA 92 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHH
Confidence 357789999999999999977666544455 999999999999999999998731000000000000000 00112222
Q ss_pred cccccccccccccccccCCCeEeCCCCCcc--cceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHH
Q 006254 166 DEKAEYDTAGNLKTQIARSPFVQIPLGVTE--DRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNL 243 (653)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~--~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~ 243 (653)
..... + ....|..+.....+ .++-+.|.++. ++.-...+.- .......-|++|||++.++...+|.
T Consensus 93 ~~i~~----~------~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~-~~~~~~~kVviIDead~m~~~aana 160 (365)
T PRK07471 93 RRIAA----G------AHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGL-TAAEGGWRVVIVDTADEMNANAANA 160 (365)
T ss_pred HHHHc----c------CCCCeEEEecccccccccccccccHHH-HHHHHHHhCc-CcccCCCEEEEEechHhcCHHHHHH
Confidence 21100 0 01223333221111 01111111111 0000000000 0011223499999999999999999
Q ss_pred HHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHH
Q 006254 244 LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAV 308 (653)
Q Consensus 244 Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~ 308 (653)
||..+++-. .+.++|.+|+ ..+.+.+.+++|+..+ .+. |++.++-.+++
T Consensus 161 LLK~LEepp-------------~~~~~IL~t~-~~~~llpti~SRc~~i-~l~-~l~~~~i~~~L 209 (365)
T PRK07471 161 LLKVLEEPP-------------ARSLFLLVSH-APARLLPTIRSRCRKL-RLR-PLAPEDVIDAL 209 (365)
T ss_pred HHHHHhcCC-------------CCeEEEEEEC-CchhchHHhhccceEE-ECC-CCCHHHHHHHH
Confidence 999999742 2334555555 4556778899998665 776 55666544444
No 216
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.00 E-value=2.2e-09 Score=105.51 Aligned_cols=90 Identities=20% Similarity=0.240 Sum_probs=75.2
Q ss_pred CceEEEEEeCCCCCChhHHHHHHHHHHHHHHhHc--------CCCCeEEEEEeecCCcEEEcCCC---cCHHHHHHHHhc
Q 006254 561 GALVIFVVDASGSMALNRMQNAKGAALKLLAESY--------TCRDQVSIIPFRGDSAEVLLPPS---RSIAMARKRLER 629 (653)
Q Consensus 561 ~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~ay--------~~rd~v~li~F~~~~a~~~lp~t---~~~~~~~~~L~~ 629 (653)
+.+++||||+||||+..++..+|.++..++.... ...++||||.|+ +.+.+.+|++ .+...+.+.|+.
T Consensus 2 ~~dvv~vlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~~~i~~~~~rvglv~fs-~~~~~~~~l~~~~~~~~~l~~~i~~ 80 (186)
T cd01480 2 PVDITFVLDSSESVGLQNFDITKNFVKRVAERFLKDYYRKDPAGSWRVGVVQYS-DQQEVEAGFLRDIRNYTSLKEAVDN 80 (186)
T ss_pred CeeEEEEEeCCCccchhhHHHHHHHHHHHHHHHhhhhccCCCCCceEEEEEEec-CCceeeEecccccCCHHHHHHHHHh
Confidence 4689999999999998788877877777765442 246899999996 5688888988 688999999999
Q ss_pred CC-CCCCCchHHHHHHHHHHHhh
Q 006254 630 LP-CGGGSPLAHGLSMGWAKCGE 651 (653)
Q Consensus 630 l~-~gG~Tpl~~gl~~a~~~l~~ 651 (653)
+. .||+|+++.||..|.+.+..
T Consensus 81 l~~~gg~T~~~~AL~~a~~~l~~ 103 (186)
T cd01480 81 LEYIGGGTFTDCALKYATEQLLE 103 (186)
T ss_pred CccCCCCccHHHHHHHHHHHHhc
Confidence 97 59999999999999988753
No 217
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.00 E-value=1.7e-09 Score=105.24 Aligned_cols=87 Identities=22% Similarity=0.302 Sum_probs=70.3
Q ss_pred CceEEEEEeCCCCCChhHHHHHHHHHHHHHHhHc-----CCCCeEEEEEeecCCcEEEcCCCcCHHHHHHHHhcCCCCCC
Q 006254 561 GALVIFVVDASGSMALNRMQNAKGAALKLLAESY-----TCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPCGGG 635 (653)
Q Consensus 561 ~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~ay-----~~rd~v~li~F~~~~a~~~lp~t~~~~~~~~~L~~l~~gG~ 635 (653)
..+|+||||+||||.+.++..+|.++..++.... ..+++|+||+|++ .+.+++|+|.... ..+..+.++|+
T Consensus 3 ~~~v~~llD~SgSM~~~~~~~~k~a~~~~~~~l~~~~~~~~~~~v~ii~F~~-~a~~~~~l~~~~~---~~~~~l~~~Gg 78 (176)
T cd01464 3 RLPIYLLLDTSGSMAGEPIEALNQGLQMLQSELRQDPYALESVEISVITFDS-AARVIVPLTPLES---FQPPRLTASGG 78 (176)
T ss_pred CCCEEEEEECCCCCCChHHHHHHHHHHHHHHHHhcChhhccccEEEEEEecC-CceEecCCccHHh---cCCCcccCCCC
Confidence 4679999999999998899999998888875432 2467999999975 6899999876322 23567789999
Q ss_pred CchHHHHHHHHHHHhh
Q 006254 636 SPLAHGLSMGWAKCGE 651 (653)
Q Consensus 636 Tpl~~gl~~a~~~l~~ 651 (653)
|+++.||..|.+.|.+
T Consensus 79 T~l~~aL~~a~~~l~~ 94 (176)
T cd01464 79 TSMGAALELALDCIDR 94 (176)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 9999999999998854
No 218
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation. They both contain three CCP or Sushi domains, a trypsin-type serine protease domain and a single VWA domain with a conserved metal ion dependent adhesion site referred commonly as the MIDAS motif. Orthologues of these molecules are found from echinoderms to chordates. During complement activation, the CCP domains are cleaved off, resulting in the formation of an active protease that cleaves and activates complement C3. Complement C2 is in the classical pathway and complement B is in the alternative pathway. The interaction of C2 with C4 and of factor B with C3b are both dependent on Mg2+ binding sites within the VWA domains and the VWA domain of factor B has been shown to mediate the binding of C3. This is consistent with the common inferred function of VWA domains as magnesium-dependent protein interaction domains.
Probab=99.00 E-value=2.4e-09 Score=106.26 Aligned_cols=87 Identities=21% Similarity=0.271 Sum_probs=72.4
Q ss_pred ceEEEEEeCCCCCChhHHHHHHHHHHHHHHhH--cCCCCeEEEEEeecCCcEEEcCCC----cCHHHHHHHHhcCC----
Q 006254 562 ALVIFVVDASGSMALNRMQNAKGAALKLLAES--YTCRDQVSIIPFRGDSAEVLLPPS----RSIAMARKRLERLP---- 631 (653)
Q Consensus 562 ~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~a--y~~rd~v~li~F~~~~a~~~lp~t----~~~~~~~~~L~~l~---- 631 (653)
.+++||||+||||+..++..+|.++..|+... +..+|+||||+|++ .+.+++|++ .+...+...|..+.
T Consensus 1 ~di~~vlD~SgSM~~~~~~~~k~~~~~l~~~l~~~~~~~~v~li~Fs~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 79 (198)
T cd01470 1 LNIYIALDASDSIGEEDFDEAKNAIKTLIEKISSYEVSPRYEIISYAS-DPKEIVSIRDFNSNDADDVIKRLEDFNYDDH 79 (198)
T ss_pred CcEEEEEECCCCccHHHHHHHHHHHHHHHHHccccCCCceEEEEEecC-CceEEEecccCCCCCHHHHHHHHHhCCcccc
Confidence 36899999999999999999999999999653 34589999999975 477777765 35778888888875
Q ss_pred -CCCCCchHHHHHHHHHHH
Q 006254 632 -CGGGSPLAHGLSMGWAKC 649 (653)
Q Consensus 632 -~gG~Tpl~~gl~~a~~~l 649 (653)
.+|+|+++.||..+.+.+
T Consensus 80 ~~~ggT~~~~Al~~~~~~l 98 (198)
T cd01470 80 GDKTGTNTAAALKKVYERM 98 (198)
T ss_pred cCccchhHHHHHHHHHHHH
Confidence 468999999999998876
No 219
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.99 E-value=3.9e-09 Score=106.62 Aligned_cols=203 Identities=18% Similarity=0.199 Sum_probs=110.7
Q ss_pred CCCCCCcee-chH--HHHHHHHHhcccCC--CceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccc
Q 006254 90 QFFPLAAVV-GQD--AIKTALLLGAIDRE--IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDG 164 (653)
Q Consensus 90 ~~~~f~~Iv-Gq~--~~k~aL~~~av~p~--~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~ 164 (653)
+.|+|+.+| |.. .+..++...+-+|. ..+++|+|++|+|||+|.+++++.+...
T Consensus 3 ~~~tFdnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~--------------------- 61 (219)
T PF00308_consen 3 PKYTFDNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQ--------------------- 61 (219)
T ss_dssp TT-SCCCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHH---------------------
T ss_pred CCCccccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhc---------------------
Confidence 468888874 642 33334332233343 3579999999999999999999875210
Q ss_pred ccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCc-cccccccccccCceEEecccccCCHH--HH
Q 006254 165 LDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTT-VFQPGLLAEAHRGVLYIDEINLLDEG--IS 241 (653)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~-~~~~Gll~~A~~giL~IDEi~~l~~~--~~ 241 (653)
..+..++.++.......+. .++..+.. .+..+ +. +--+|+||+|+.+... .+
T Consensus 62 ----------------~~~~~v~y~~~~~f~~~~~------~~~~~~~~~~~~~~-~~--~~DlL~iDDi~~l~~~~~~q 116 (219)
T PF00308_consen 62 ----------------HPGKRVVYLSAEEFIREFA------DALRDGEIEEFKDR-LR--SADLLIIDDIQFLAGKQRTQ 116 (219)
T ss_dssp ----------------CTTS-EEEEEHHHHHHHHH------HHHHTTSHHHHHHH-HC--TSSEEEEETGGGGTTHHHHH
T ss_pred ----------------cccccceeecHHHHHHHHH------HHHHcccchhhhhh-hh--cCCEEEEecchhhcCchHHH
Confidence 0122333333222111111 12222211 11111 11 2359999999999764 47
Q ss_pred HHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCC---CcccHHHHhhh--cccccccCCCCHhhHHHHHHHHHHHHh
Q 006254 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE---GVVREHLLDRI--AINLSADLPMTFEDRVAAVGIATQFQE 316 (653)
Q Consensus 242 ~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e---g~l~~aLldRf--~~~v~l~~p~~~~~r~~I~~~~~~~~~ 316 (653)
..|+..++.-. . .| -.+|.|++..+ ..+++.|.+|| ++.+.+. |++.+.|.+|+....
T Consensus 117 ~~lf~l~n~~~---~-~~--------k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~-~pd~~~r~~il~~~a---- 179 (219)
T PF00308_consen 117 EELFHLFNRLI---E-SG--------KQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQ-PPDDEDRRRILQKKA---- 179 (219)
T ss_dssp HHHHHHHHHHH---H-TT--------SEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE-----HHHHHHHHHHHH----
T ss_pred HHHHHHHHHHH---h-hC--------CeEEEEeCCCCccccccChhhhhhHhhcchhhcC-CCCHHHHHHHHHHHH----
Confidence 77777776532 1 11 13555555333 34779999999 4577777 568888888876321
Q ss_pred hhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHH
Q 006254 317 RSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAAL 384 (653)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal 384 (653)
....+.++++++++|++.+.. +.|....++..-.+++.+
T Consensus 180 -------------------------~~~~~~l~~~v~~~l~~~~~~----~~r~L~~~l~~l~~~~~~ 218 (219)
T PF00308_consen 180 -------------------------KERGIELPEEVIEYLARRFRR----DVRELEGALNRLDAYAQL 218 (219)
T ss_dssp -------------------------HHTT--S-HHHHHHHHHHTTS----SHHHHHHHHHHHHHHHHH
T ss_pred -------------------------HHhCCCCcHHHHHHHHHhhcC----CHHHHHHHHHHHHHHhhc
Confidence 123456999999999876432 567777777666555543
No 220
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=2.5e-09 Score=123.28 Aligned_cols=215 Identities=20% Similarity=0.231 Sum_probs=142.0
Q ss_pred CCCCCCceechHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccc
Q 006254 90 QFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKA 169 (653)
Q Consensus 90 ~~~~f~~IvGq~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~ 169 (653)
+.-.++-|+|.+..++.++-.+......+-+|.|+||+|||.++..||..+-.
T Consensus 165 r~gklDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~--------------------------- 217 (786)
T COG0542 165 REGKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVN--------------------------- 217 (786)
T ss_pred hcCCCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhc---------------------------
Confidence 34567889999998888866677777788899999999999999999998742
Q ss_pred cccccccccccccCCCeEeCCCCCcc--cceeeecchhhhhccCCccccccccccccCceEEecccccC---------CH
Q 006254 170 EYDTAGNLKTQIARSPFVQIPLGVTE--DRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLL---------DE 238 (653)
Q Consensus 170 ~~~~~~~~~~~~~~~~fv~l~~~~~~--~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l---------~~ 238 (653)
+..+....+..++.+..+... .++-|. ++.-++ ..---+..+.+-||||||||.+ .-
T Consensus 218 -----g~VP~~L~~~~i~sLD~g~LvAGakyRGe--FEeRlk-----~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~ 285 (786)
T COG0542 218 -----GDVPESLKDKRIYSLDLGSLVAGAKYRGE--FEERLK-----AVLKEVEKSKNVILFIDEIHTIVGAGATEGGAM 285 (786)
T ss_pred -----CCCCHHHcCCEEEEecHHHHhccccccCc--HHHHHH-----HHHHHHhcCCCeEEEEechhhhcCCCccccccc
Confidence 122222234555554433211 111121 111110 0001122334679999999976 14
Q ss_pred HHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCC----cccHHHHhhhcccccccCCCCHhhHHHHHH-HHHH
Q 006254 239 GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG----VVREHLLDRIAINLSADLPMTFEDRVAAVG-IATQ 313 (653)
Q Consensus 239 ~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg----~l~~aLldRf~~~v~l~~p~~~~~r~~I~~-~~~~ 313 (653)
+..|.|..++..|. ..+||+|+.+|. +-+++|-+||..+ .|.. |+.++-..|++ +...
T Consensus 286 DAaNiLKPaLARGe---------------L~~IGATT~~EYRk~iEKD~AL~RRFQ~V-~V~E-Ps~e~ti~ILrGlk~~ 348 (786)
T COG0542 286 DAANLLKPALARGE---------------LRCIGATTLDEYRKYIEKDAALERRFQKV-LVDE-PSVEDTIAILRGLKER 348 (786)
T ss_pred chhhhhHHHHhcCC---------------eEEEEeccHHHHHHHhhhchHHHhcCcee-eCCC-CCHHHHHHHHHHHHHH
Confidence 57899999999997 468999997775 3678999999988 7885 58888888876 2233
Q ss_pred HHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCC
Q 006254 314 FQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGC 365 (653)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i 365 (653)
|+.++ .+.-..+.+.........++++-.++|.+++.+-+.|.....
T Consensus 349 yE~hH-----~V~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~a~~~l 395 (786)
T COG0542 349 YEAHH-----GVRITDEALVAAVTLSDRYIPDRFLPDKAIDLLDEAGARVRL 395 (786)
T ss_pred HHHcc-----CceecHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHh
Confidence 32222 233344556666666677777888888888888887776544
No 221
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=4e-09 Score=113.63 Aligned_cols=141 Identities=21% Similarity=0.273 Sum_probs=92.4
Q ss_pred CCCCCCceechHHHHHHHH---Hhccc----------CCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCC
Q 006254 90 QFFPLAAVVGQDAIKTALL---LGAID----------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT 156 (653)
Q Consensus 90 ~~~~f~~IvGq~~~k~aL~---~~av~----------p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~ 156 (653)
++-+|+-++=...+|+.+. ..-+. |=.+|-||+||||||||+++.|+|+.|.
T Consensus 196 HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~--------------- 260 (457)
T KOG0743|consen 196 HPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLN--------------- 260 (457)
T ss_pred CCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcC---------------
Confidence 3467888988888888883 22221 1246799999999999999999999985
Q ss_pred CCCcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccC
Q 006254 157 CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLL 236 (653)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l 236 (653)
..+..|.. ++-..-+ | ++.=++...+..||+|.+|+..
T Consensus 261 ---------------------------ydIydLeL--t~v~~n~--d-----------Lr~LL~~t~~kSIivIEDIDcs 298 (457)
T KOG0743|consen 261 ---------------------------YDIYDLEL--TEVKLDS--D-----------LRHLLLATPNKSILLIEDIDCS 298 (457)
T ss_pred ---------------------------CceEEeee--ccccCcH--H-----------HHHHHHhCCCCcEEEEeecccc
Confidence 11111211 1111111 1 1222445557789999998753
Q ss_pred ------------------CHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHh--hhccccccc
Q 006254 237 ------------------DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSAD 296 (653)
Q Consensus 237 ------------------~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLld--Rf~~~v~l~ 296 (653)
+.-++.-||.+++ |. ....|. .=++|.||| -...|+|||++ |++++|++.
T Consensus 299 ~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiD-Gl--wSscg~------ERIivFTTN-h~EkLDPALlRpGRmDmhI~mg 368 (457)
T KOG0743|consen 299 FDLRERRKKKKENFEGDLSRVTLSGLLNFLD-GL--WSSCGD------ERIIVFTTN-HKEKLDPALLRPGRMDMHIYMG 368 (457)
T ss_pred cccccccccccccccCCcceeehHHhhhhhc-cc--cccCCC------ceEEEEecC-ChhhcCHhhcCCCcceeEEEcC
Confidence 1134566888876 32 122221 236889999 77889999999 999999987
Q ss_pred C
Q 006254 297 L 297 (653)
Q Consensus 297 ~ 297 (653)
.
T Consensus 369 y 369 (457)
T KOG0743|consen 369 Y 369 (457)
T ss_pred C
Confidence 5
No 222
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=98.96 E-value=3.1e-09 Score=104.16 Aligned_cols=88 Identities=17% Similarity=0.234 Sum_probs=78.9
Q ss_pred eEEEEEeCCCCCCh-----hHHHHHHHHHHHHHHhH--cCCCCeEEEEEeecCCcEEEcCCCcCHHHHHHHHhcCCCCCC
Q 006254 563 LVIFVVDASGSMAL-----NRMQNAKGAALKLLAES--YTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPCGGG 635 (653)
Q Consensus 563 ~v~~vvD~SgSM~~-----~r~~~ak~a~~~ll~~a--y~~rd~v~li~F~~~~a~~~lp~t~~~~~~~~~L~~l~~gG~ 635 (653)
.++|++|.|.||.. +|+..+|.++..|+..- ....++||||+|+|..+.++.|+|.+...+...|..+.++|+
T Consensus 5 a~vi~lD~S~sM~a~D~~PnRL~aak~~i~~~~~~f~~~np~~~vGlv~fag~~a~v~~plT~D~~~~~~~L~~i~~~g~ 84 (187)
T cd01452 5 ATMICIDNSEYMRNGDYPPTRFQAQADAVNLICQAKTRSNPENNVGLMTMAGNSPEVLVTLTNDQGKILSKLHDVQPKGK 84 (187)
T ss_pred EEEEEEECCHHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCccEEEEEecCCceEEEECCCCCHHHHHHHHHhCCCCCc
Confidence 57899999999944 79999999999886222 367899999999988899999999999999999999999999
Q ss_pred CchHHHHHHHHHHHh
Q 006254 636 SPLAHGLSMGWAKCG 650 (653)
Q Consensus 636 Tpl~~gl~~a~~~l~ 650 (653)
|.|..||+.|...|.
T Consensus 85 ~~l~~AL~~A~~~L~ 99 (187)
T cd01452 85 ANFITGIQIAQLALK 99 (187)
T ss_pred chHHHHHHHHHHHHh
Confidence 999999999999885
No 223
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=98.96 E-value=3.7e-09 Score=101.52 Aligned_cols=89 Identities=29% Similarity=0.403 Sum_probs=72.7
Q ss_pred CceEEEEEeCCCCCChhHHHHHHHHHHHHHHhHcCCCCeEEEEEeecCCcEEEcCCC-----cCHHHHHHHHhcCCCCCC
Q 006254 561 GALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPS-----RSIAMARKRLERLPCGGG 635 (653)
Q Consensus 561 ~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~ay~~rd~v~li~F~~~~a~~~lp~t-----~~~~~~~~~L~~l~~gG~ 635 (653)
+.+++||||+||||.+.++..+|.++..++. .+...|+|+||+|++. ...+.|.+ .....+...|..+.++|+
T Consensus 2 ~~~v~~vlD~S~SM~~~~~~~~~~al~~~l~-~l~~~~~~~l~~Fs~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 79 (171)
T cd01461 2 PKEVVFVIDTSGSMSGTKIEQTKEALLTALK-DLPPGDYFNIIGFSDT-VEEFSPSSVSATAENVAAAIEYVNRLQALGG 79 (171)
T ss_pred CceEEEEEECCCCCCChhHHHHHHHHHHHHH-hCCCCCEEEEEEeCCC-ceeecCcceeCCHHHHHHHHHHHHhcCCCCC
Confidence 4689999999999988899999999988874 5678899999999754 55555532 134556678888999999
Q ss_pred CchHHHHHHHHHHHhh
Q 006254 636 SPLAHGLSMGWAKCGE 651 (653)
Q Consensus 636 Tpl~~gl~~a~~~l~~ 651 (653)
|++..||..|++.+.+
T Consensus 80 T~l~~al~~a~~~l~~ 95 (171)
T cd01461 80 TNMNDALEAALELLNS 95 (171)
T ss_pred cCHHHHHHHHHHhhcc
Confidence 9999999999998863
No 224
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.95 E-value=9.6e-09 Score=106.45 Aligned_cols=138 Identities=14% Similarity=0.083 Sum_probs=85.8
Q ss_pred cCceEEecccccCCHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCC-Ccc----cHHHHhhhcccccccCC
Q 006254 224 HRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE-GVV----REHLLDRIAINLSADLP 298 (653)
Q Consensus 224 ~~giL~IDEi~~l~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e-g~l----~~aLldRf~~~v~l~~p 298 (653)
...+|+|||++.++....+.|....+-. .++. ..+.+|.+..++- ..+ ...+.+|+...+.+. |
T Consensus 123 ~~~vliiDe~~~l~~~~~~~l~~l~~~~-----~~~~-----~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~-~ 191 (269)
T TIGR03015 123 KRALLVVDEAQNLTPELLEELRMLSNFQ-----TDNA-----KLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLG-P 191 (269)
T ss_pred CCeEEEEECcccCCHHHHHHHHHHhCcc-----cCCC-----CeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCC-C
Confidence 3458999999999988777665443321 1110 1123333333321 111 235778887777776 5
Q ss_pred CCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 006254 299 MTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVA 378 (653)
Q Consensus 299 ~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~A 378 (653)
.+.++..+++.... ..+ .......+++++++.|.+.+. |. .|....++..+
T Consensus 192 l~~~e~~~~l~~~l------------------------~~~-g~~~~~~~~~~~~~~i~~~s~--G~--p~~i~~l~~~~ 242 (269)
T TIGR03015 192 LDREETREYIEHRL------------------------ERA-GNRDAPVFSEGAFDAIHRFSR--GI--PRLINILCDRL 242 (269)
T ss_pred CCHHHHHHHHHHHH------------------------HHc-CCCCCCCcCHHHHHHHHHHcC--Cc--ccHHHHHHHHH
Confidence 66665444433211 111 112235689999999987752 33 67777788888
Q ss_pred HHHHHHcCCCCccHHHHHHHHHH
Q 006254 379 KCLAALEGREKVNVDDLKKAVEL 401 (653)
Q Consensus 379 ra~Aal~gr~~Vt~eDv~~A~~l 401 (653)
...|...+...|+.++|++++.-
T Consensus 243 ~~~a~~~~~~~i~~~~v~~~~~~ 265 (269)
T TIGR03015 243 LLSAFLEEKREIGGEEVREVIAE 265 (269)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHH
Confidence 88888899999999999999864
No 225
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=1.5e-09 Score=112.20 Aligned_cols=133 Identities=21% Similarity=0.243 Sum_probs=82.1
Q ss_pred cCceEEecccccCC------------HHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEec---CCCCcccHHHHhh
Q 006254 224 HRGVLYIDEINLLD------------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYN---PEEGVVREHLLDR 288 (653)
Q Consensus 224 ~~giL~IDEi~~l~------------~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattN---p~eg~l~~aLldR 288 (653)
+.||+|||||+... ..+|.-||..++ |......-|.... ..+.+||+-- ..+..|-|.|.-|
T Consensus 250 ~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvE-GstV~TKyG~VkT--dHILFIasGAFh~sKPSDLiPELQGR 326 (444)
T COG1220 250 QNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVE-GSTVSTKYGPVKT--DHILFIASGAFHVAKPSDLIPELQGR 326 (444)
T ss_pred hcCeEEEehhhHHHhcCCCCCCCcchhhhccccccccc-Cceeecccccccc--ceEEEEecCceecCChhhcChhhcCC
Confidence 58999999998752 246667777665 3322233332211 1244555422 1567899999999
Q ss_pred hcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCC---
Q 006254 289 IAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGC--- 365 (653)
Q Consensus 289 f~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i--- 365 (653)
|.++|++. +.+.+.-..|+.. |. ...+.+........--.+.+++++++.|+++++..|-
T Consensus 327 fPIRVEL~-~Lt~~Df~rILte-------p~---------~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~E 389 (444)
T COG1220 327 FPIRVELD-ALTKEDFERILTE-------PK---------ASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTE 389 (444)
T ss_pred CceEEEcc-cCCHHHHHHHHcC-------cc---------hHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhccccc
Confidence 99999998 5677766666531 11 1111222222222223478999999999999998753
Q ss_pred -CCcchHHHHHH
Q 006254 366 -QGHRAELYAAR 376 (653)
Q Consensus 366 -~s~R~~i~llr 376 (653)
.|.|++-.++.
T Consensus 390 NIGARRLhTvlE 401 (444)
T COG1220 390 NIGARRLHTVLE 401 (444)
T ss_pred chhHHHHHHHHH
Confidence 36777766654
No 226
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=98.94 E-value=5.8e-09 Score=102.36 Aligned_cols=89 Identities=22% Similarity=0.231 Sum_probs=66.9
Q ss_pred CCceEEEEEeCCCCCChhHHHHHHHHHHHHHHhHcCCCCeEEEEEeecCCcEEEcCCCcCHHHHHHH---HhcCCCCCCC
Q 006254 560 AGALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKR---LERLPCGGGS 636 (653)
Q Consensus 560 ~~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~ay~~rd~v~li~F~~~~a~~~lp~t~~~~~~~~~---L~~l~~gG~T 636 (653)
.+.+++||||.||||+.+... .+..+..++......+++||||+|+ ..+.+++|++.......+. |..+.++|+|
T Consensus 3 ~~~Dvv~llD~SgSm~~~~~~-~~~~~~~l~~~~~~~~~rvglv~Fs-~~~~~~~~l~~~~~~~~~~l~~l~~~~~~g~T 80 (185)
T cd01474 3 GHFDLYFVLDKSGSVAANWIE-IYDFVEQLVDRFNSPGLRFSFITFS-TRATKILPLTDDSSAIIKGLEVLKKVTPSGQT 80 (185)
T ss_pred CceeEEEEEeCcCchhhhHHH-HHHHHHHHHHHcCCCCcEEEEEEec-CCceEEEeccccHHHHHHHHHHHhccCCCCCC
Confidence 367899999999999864322 2344444443333467999999996 5689999999876655544 5677789999
Q ss_pred chHHHHHHHHHHHh
Q 006254 637 PLAHGLSMGWAKCG 650 (653)
Q Consensus 637 pl~~gl~~a~~~l~ 650 (653)
+++.||..|.+.+.
T Consensus 81 ~~~~aL~~a~~~l~ 94 (185)
T cd01474 81 YIHEGLENANEQIF 94 (185)
T ss_pred cHHHHHHHHHHHHH
Confidence 99999999998773
No 227
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.94 E-value=2.7e-09 Score=118.81 Aligned_cols=210 Identities=19% Similarity=0.233 Sum_probs=137.2
Q ss_pred CCC-CCceechHHHHHHHHHh---cc---cCCCceEEEECCCCCHHHHHHHHHHhhCCCCe--eecc----ccccCCCCC
Q 006254 91 FFP-LAAVVGQDAIKTALLLG---AI---DREIGGIAISGRRGTAKTVMARGLHAILPPIE--VVVG----SIANADPTC 157 (653)
Q Consensus 91 ~~~-f~~IvGq~~~k~aL~~~---av---~p~~~gVLL~GppGTGKT~lArala~~l~~~~--~v~~----~~~nc~p~~ 157 (653)
.|+ |+++.|+++++..+.-. ++ .....-++|.||||+|||+||+.|+..+.... .+.+ ||.+-+|-.
T Consensus 71 ry~fF~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg~~~~sP~~e~PL~ 150 (644)
T PRK15455 71 RYPAFEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKANGERSPVNESPLG 150 (644)
T ss_pred cccchhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecCCCCCCCCCCCCCC
Confidence 444 78999999999988321 22 22333499999999999999999999876432 3445 887777642
Q ss_pred ---CC-------------------cccccccccccccccccccccccCCCeEe-------------C----CCCCcccce
Q 006254 158 ---PD-------------------EWEDGLDEKAEYDTAGNLKTQIARSPFVQ-------------I----PLGVTEDRL 198 (653)
Q Consensus 158 ---~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~fv~-------------l----~~~~~~~~l 198 (653)
++ .+|..|+.++. .-+|.+.. .+++. . +.+...+.|
T Consensus 151 L~p~~~~~~~le~~~gi~~r~i~g~lsP~~r~rL~-e~~Gd~~~----~~V~r~~~S~~~riGIg~~eP~D~~nQD~s~L 225 (644)
T PRK15455 151 LFDPDEDGPILEEEYGIPRRYLGTIMSPWAVKRLH-EFGGDISK----FRVVKVYPSILRQIAIAKTEPGDENNQDISSL 225 (644)
T ss_pred CCChhhhHHHHHHHhCCCccccCCCCCHHHHHHHH-HhCCCchh----eEEEEEeeccccceEEEecCCCCCCCCChhHh
Confidence 11 13444444431 12232221 22222 1 222355689
Q ss_pred eeecchhhhhccCCc---cc-cccccccccCceEEecccccCCHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEe
Q 006254 199 IGSVDVEESVKTGTT---VF-QPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATY 274 (653)
Q Consensus 199 ~G~~d~~~~~~~g~~---~~-~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIatt 274 (653)
+|++|+.+...-+.. .+ -.|.|..|++|++=+=|+-..+.+.+..||.+.++|.+. -.+.-..+|.+-+|||.|
T Consensus 226 ~G~vdi~kl~~ys~~dp~aysf~G~L~~aNrGl~EFvEm~K~~~~~L~~LLtatQE~~i~--~~~~~~~i~~D~vIiaHs 303 (644)
T PRK15455 226 VGKVDIRKLEHYAQNDPDAYSYSGGLCRANQGLLEFVEMFKAPIKVLHPLLTATQEGNYN--GTEGIGAIPFDGIILAHS 303 (644)
T ss_pred ccceeHHhhhccCCCCCccccCCchhhhccCCcEeeHHHhcCcHHHHHHhcCCCccCccc--CCCCcceeccceeEEecC
Confidence 999998775543322 11 158999999998877799999999999999999999842 223333567788999999
Q ss_pred cCCC------CcccHHHHhhhcccccccCCCCHhhHHHHH
Q 006254 275 NPEE------GVVREHLLDRIAINLSADLPMTFEDRVAAV 308 (653)
Q Consensus 275 Np~e------g~l~~aLldRf~~~v~l~~p~~~~~r~~I~ 308 (653)
|..| ..--++|+||+-++ .+++-....+...|.
T Consensus 304 NE~E~~~F~~nk~nEA~~DRi~~V-~VPY~lr~~eE~kIY 342 (644)
T PRK15455 304 NESEWQTFRNNKNNEAFLDRIYIV-KVPYCLRVSEEIKIY 342 (644)
T ss_pred CHHHHHHHhcCccchhhhceEEEE-eCCccCChhHHHHHH
Confidence 9644 23558999999664 665433333444454
No 228
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=98.93 E-value=6.7e-09 Score=99.85 Aligned_cols=87 Identities=17% Similarity=0.193 Sum_probs=72.7
Q ss_pred ceEEEEEeCCCCCChhHHHHHHHHHHHHHHh--HcCCCCeEEEEEeecCCcEEEcCCC--cCHHHHHHHHhcCC-CCCCC
Q 006254 562 ALVIFVVDASGSMALNRMQNAKGAALKLLAE--SYTCRDQVSIIPFRGDSAEVLLPPS--RSIAMARKRLERLP-CGGGS 636 (653)
Q Consensus 562 ~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~--ay~~rd~v~li~F~~~~a~~~lp~t--~~~~~~~~~L~~l~-~gG~T 636 (653)
.+++||||.||||+...+..+|.++..++.. .+..+++||||+|++ .+.+.+|++ .+...+.+.|..++ .||+|
T Consensus 1 ~Dv~~vlD~S~Sm~~~~~~~~k~~~~~l~~~~~~~~~~~rvgli~fs~-~~~~~~~l~~~~~~~~l~~~l~~~~~~~g~T 79 (164)
T cd01482 1 ADIVFLVDGSWSIGRSNFNLVRSFLSSVVEAFEIGPDGVQVGLVQYSD-DPRTEFDLNAYTSKEDVLAAIKNLPYKGGNT 79 (164)
T ss_pred CCEEEEEeCCCCcChhhHHHHHHHHHHHHhheeeCCCceEEEEEEECC-CeeEEEecCCCCCHHHHHHHHHhCcCCCCCC
Confidence 3689999999999877889999999888863 334689999999975 577777776 57778888898887 79999
Q ss_pred chHHHHHHHHHHH
Q 006254 637 PLAHGLSMGWAKC 649 (653)
Q Consensus 637 pl~~gl~~a~~~l 649 (653)
+++.||..+.+.+
T Consensus 80 ~~~~aL~~a~~~~ 92 (164)
T cd01482 80 RTGKALTHVREKN 92 (164)
T ss_pred hHHHHHHHHHHHh
Confidence 9999999988765
No 229
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=5.1e-09 Score=116.77 Aligned_cols=151 Identities=18% Similarity=0.235 Sum_probs=101.9
Q ss_pred CceechHHHHHHHHHhcccC-------------CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcc
Q 006254 95 AAVVGQDAIKTALLLGAIDR-------------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEW 161 (653)
Q Consensus 95 ~~IvGq~~~k~aL~~~av~p-------------~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~ 161 (653)
.++.|......++......| -..++|++||||||||.+++++++.-
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~--------------------- 242 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEY--------------------- 242 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHh---------------------
Confidence 46777766555553222221 23569999999999999999999964
Q ss_pred cccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccc---c-CceEEecccccCC
Q 006254 162 EDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---H-RGVLYIDEINLLD 237 (653)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A---~-~giL~IDEi~~l~ 237 (653)
+..++.++.......+.|.-+ +.++ -.|++| . +.|+||||++.+-
T Consensus 243 ---------------------~a~~~~i~~peli~k~~gEte--~~LR--------~~f~~a~k~~~psii~IdEld~l~ 291 (693)
T KOG0730|consen 243 ---------------------GAFLFLINGPELISKFPGETE--SNLR--------KAFAEALKFQVPSIIFIDELDALC 291 (693)
T ss_pred ---------------------CceeEecccHHHHHhcccchH--HHHH--------HHHHHHhccCCCeeEeHHhHhhhC
Confidence 234455555544444555321 1110 011111 1 6799999999885
Q ss_pred H----------HHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHh-hhcccccccCCCCHhhHHH
Q 006254 238 E----------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD-RIAINLSADLPMTFEDRVA 306 (653)
Q Consensus 238 ~----------~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLld-Rf~~~v~l~~p~~~~~r~~ 306 (653)
+ .+...|+.+|+.-. -..++++|+++| .+..|+++|.+ ||+.-|.|..| +...|.+
T Consensus 292 p~r~~~~~~e~Rv~sqlltL~dg~~-----------~~~~vivl~atn-rp~sld~alRRgRfd~ev~IgiP-~~~~Rld 358 (693)
T KOG0730|consen 292 PKREGADDVESRVVSQLLTLLDGLK-----------PDAKVIVLAATN-RPDSLDPALRRGRFDREVEIGIP-GSDGRLD 358 (693)
T ss_pred CcccccchHHHHHHHHHHHHHhhCc-----------CcCcEEEEEecC-CccccChhhhcCCCcceeeecCC-CchhHHH
Confidence 3 56777888887432 123678999999 88889999997 99999999965 8888999
Q ss_pred HHHH
Q 006254 307 AVGI 310 (653)
Q Consensus 307 I~~~ 310 (653)
|++.
T Consensus 359 Il~~ 362 (693)
T KOG0730|consen 359 ILRV 362 (693)
T ss_pred HHHH
Confidence 9874
No 230
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=98.90 E-value=9.6e-09 Score=99.86 Aligned_cols=88 Identities=20% Similarity=0.384 Sum_probs=74.0
Q ss_pred CceEEEEEeCCCCCCh------hHHHHHHHHHHHHHHhHcCCCCeEEEEEeecCCcEEEcCCCcCHHHHHHHHhcCC---
Q 006254 561 GALVIFVVDASGSMAL------NRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLP--- 631 (653)
Q Consensus 561 ~~~v~~vvD~SgSM~~------~r~~~ak~a~~~ll~~ay~~rd~v~li~F~~~~a~~~lp~t~~~~~~~~~L~~l~--- 631 (653)
+.+++||||+|+||.. .|+..+|.++..++.. ..+|+|+||.|.+ ...+++|++.+...+...|+.+.
T Consensus 2 ~~~vv~vlD~S~SM~~~~~~~~~r~~~a~~~~~~~~~~--~~~~~v~lv~f~~-~~~~~~~~~~~~~~~~~~l~~l~~~~ 78 (180)
T cd01467 2 GRDIMIALDVSGSMLAQDFVKPSRLEAAKEVLSDFIDR--RENDRIGLVVFAG-AAFTQAPLTLDRESLKELLEDIKIGL 78 (180)
T ss_pred CceEEEEEECCcccccccCCCCCHHHHHHHHHHHHHHh--CCCCeEEEEEEcC-CeeeccCCCccHHHHHHHHHHhhhcc
Confidence 6789999999999953 4899999999888743 5789999999964 57788999988887777776664
Q ss_pred CCCCCchHHHHHHHHHHHhh
Q 006254 632 CGGGSPLAHGLSMGWAKCGE 651 (653)
Q Consensus 632 ~gG~Tpl~~gl~~a~~~l~~ 651 (653)
.+|+|+++.||..|++++.+
T Consensus 79 ~~g~T~l~~al~~a~~~l~~ 98 (180)
T cd01467 79 AGQGTAIGDAIGLAIKRLKN 98 (180)
T ss_pred cCCCCcHHHHHHHHHHHHHh
Confidence 78999999999999998865
No 231
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=98.87 E-value=5e-09 Score=110.73 Aligned_cols=213 Identities=20% Similarity=0.187 Sum_probs=139.5
Q ss_pred CC-ceechHHHHHHHH----Hhcc--cCCCceEEEECCCCCHHHHHHHHHHhhCCCCe--eeccccccCCCCC-------
Q 006254 94 LA-AVVGQDAIKTALL----LGAI--DREIGGIAISGRRGTAKTVMARGLHAILPPIE--VVVGSIANADPTC------- 157 (653)
Q Consensus 94 f~-~IvGq~~~k~aL~----~~av--~p~~~gVLL~GppGTGKT~lArala~~l~~~~--~v~~~~~nc~p~~------- 157 (653)
|. ++.|.++.+..+. -++. .....=++|.||+|+|||++++.|.+.+-.-. .+.+||.+-+|-.
T Consensus 59 f~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm~e~PL~L~P~~~r 138 (358)
T PF08298_consen 59 FEDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPMHEEPLHLFPKELR 138 (358)
T ss_pred ccccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCccccChhhhCCHhHH
Confidence 45 8999999888772 2222 11233399999999999999999999886543 3678888888742
Q ss_pred -----------CCccccccccccccccccccccc---c------cCCCeEeC----CCCCcccceeeecchhhhhccCC-
Q 006254 158 -----------PDEWEDGLDEKAEYDTAGNLKTQ---I------ARSPFVQI----PLGVTEDRLIGSVDVEESVKTGT- 212 (653)
Q Consensus 158 -----------~~~~~~~~~~~~~~~~~~~~~~~---~------~~~~fv~l----~~~~~~~~l~G~~d~~~~~~~g~- 212 (653)
....|..|+.++...-.+.+... + ...-.... +.+.....|+|.+|+.+-..-+.
T Consensus 139 ~~~~~~~~~~i~g~l~p~~~~~L~~~y~Gd~~~~~V~r~~~S~~~r~GI~~f~P~D~~~qd~s~LtG~vd~~kl~~~s~~ 218 (358)
T PF08298_consen 139 REFEDELGIRIEGELCPWCRKRLLEEYGGDIEKFRVERLYFSERDRVGIGTFEPGDEKNQDISDLTGSVDIRKLAEYSES 218 (358)
T ss_pred HHHHHHhCcccCCCcCHHHHHHHHHHhCCCccEEEEEEEccceecceeEEEECCCCCCCcchhhhhhHHHHHHHhhhccC
Confidence 22235555554422222322210 0 00111111 22334468999988766433222
Q ss_pred --cccc-ccccccccCceEEecccccCCHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCC------cccH
Q 006254 213 --TVFQ-PGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG------VVRE 283 (653)
Q Consensus 213 --~~~~-~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg------~l~~ 283 (653)
..+. .|.|..|++|++=+=|+-..+.+.+..||.+.++|.+.+. |.....+.+-++||.||+.+. .--+
T Consensus 219 dp~af~~~G~l~~aNrGi~ef~E~~K~~~~~L~~LL~~tqEg~ik~~--~~~~~i~~D~liiAhsNe~E~~~f~~~~~~e 296 (358)
T PF08298_consen 219 DPRAFSYSGELNRANRGIMEFVEMLKAPIEFLHPLLTATQEGNIKVD--EDFGMIPFDELIIAHSNEEEYNKFKNNKNNE 296 (358)
T ss_pred CCeeEeeccHHHHhhchhHHHHHHhcCcHHHHHHHhcchhcCceecC--CcccccccceeEEecCCHHHHHHHhccccch
Confidence 1222 4899999999998889999999999999999999986542 333336778899999997553 2348
Q ss_pred HHHhhhcccccccCCCCHhhHHHHHH
Q 006254 284 HLLDRIAINLSADLPMTFEDRVAAVG 309 (653)
Q Consensus 284 aLldRf~~~v~l~~p~~~~~r~~I~~ 309 (653)
+|+||+.++ .|++..+..+..+|.+
T Consensus 297 Af~DRi~~I-~VPY~L~~s~E~kIY~ 321 (358)
T PF08298_consen 297 AFKDRIEVI-KVPYCLRVSEEVKIYE 321 (358)
T ss_pred hhhhheEEE-eccccCCHHHHHHHHH
Confidence 999999555 8876656555555543
No 232
>PF13654 AAA_32: AAA domain; PDB: 3K1J_B.
Probab=98.87 E-value=1.6e-08 Score=113.58 Aligned_cols=184 Identities=20% Similarity=0.162 Sum_probs=104.2
Q ss_pred Ccccceeeecchhh---hhccCCccccccccccccCceEEecccccCC-HHHHHHHHHHHHcCceEEeeCC---e-----
Q 006254 193 VTEDRLIGSVDVEE---SVKTGTTVFQPGLLAEAHRGVLYIDEINLLD-EGISNLLLNVLTEGVNIVEREG---I----- 260 (653)
Q Consensus 193 ~~~~~l~G~~d~~~---~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~-~~~~~~Ll~~l~~g~~~v~r~G---~----- 260 (653)
-+...|||.++-.. .+.+.....+||.|.+||||+|+||--+.|. +.....|..+|..|.+.++..+ .
T Consensus 298 Pt~~nLfG~Ie~~~~~G~~~td~~~I~~GaLhkANGGyLIL~a~~LL~~p~~W~~LKr~L~~~~i~ie~~~~~~~~~~~~ 377 (509)
T PF13654_consen 298 PTYSNLFGRIEYESEMGTLVTDFTLIKPGALHKANGGYLILDAEDLLANPYAWERLKRALRTGEIEIESPEEYGLSSTVS 377 (509)
T ss_dssp --HHHHH-EE-----------GGGGEE--HHHHTTTSEEEETTGGGS-HHH-HHHHHHHHHHSEE--B-S---TTSGGGG
T ss_pred CCHHHCcEEEEEECCCCCEecCcceEcCceEEecCCeEEEEEHHHhhhChHHHHHHHHHHHcCceeeccccccccCCCCC
Confidence 34457899875433 1222233468999999999999999999987 5779999999999998887653 1
Q ss_pred --eEEeecCcEEEEEecCCC----CcccHHHHhhhcccccccCC--CCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHH
Q 006254 261 --SFKHPCKPLLIATYNPEE----GVVREHLLDRIAINLSADLP--MTFEDRVAAVGIATQFQERSNEVFKMVEEETDLA 332 (653)
Q Consensus 261 --s~~~p~~~~lIattNp~e----g~l~~aLldRf~~~v~l~~p--~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l 332 (653)
.-.+|.++-||..-++.. ..+++.|..-|.+.+++..- .+.+....... |
T Consensus 378 l~PepIpl~vKVILiG~~~~y~~L~~~D~dF~~lFkv~aef~~~~~~~~e~~~~~~~----~------------------ 435 (509)
T PF13654_consen 378 LEPEPIPLDVKVILIGDRELYYLLYEYDPDFYKLFKVKAEFDSEMPRTEENIRQYAR----F------------------ 435 (509)
T ss_dssp -B-S-EE---EEEEEE-TTHHHHS-HHHHHHHHHHSEEEE--SEEE--HHHHHHHHH----H------------------
T ss_pred CCCCCcceEEEEEEEcCHHHHHHHHHhCHHHHhCCCEEEEccccCCCCHHHHHHHHH----H------------------
Confidence 112455544444434433 45778999999988887732 12222111111 1
Q ss_pred HHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCC----CcchHHHHHHHHHHHHHHcCCCCccHHHHHHHHHH
Q 006254 333 KTQIILAREYLKDVAIGREQLKYLVMEALRGGCQ----GHRAELYAARVAKCLAALEGREKVNVDDLKKAVEL 401 (653)
Q Consensus 333 ~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~----s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~l 401 (653)
...+..... -..++.+++..|++++.+..-. .......+++-|..+|...|...|+.+||..|++.
T Consensus 436 i~~~~~~~~---L~~~~~~Av~~li~~~~R~~q~kLsl~~~~l~~ll~EA~~~A~~~~~~~I~~~~V~~Ai~~ 505 (509)
T PF13654_consen 436 IASICQKEG---LPPFDRSAVARLIEYSARLDQDKLSLRFSWLADLLREANYWARKEGAKVITAEHVEQAIEE 505 (509)
T ss_dssp HHHHHHHHS---S--BBHHHHHHHHHHHHHCC-SEEE--HHHHHHHHHHHHHHHHHCT-SSB-HHHHHHHHHH
T ss_pred HHHHHHhCC---CCCCCHHHHHHHHHHHHHHhCCEeCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHc
Confidence 111222222 2368999999999998886221 12235578888889999999999999999999864
No 233
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=98.86 E-value=1.4e-08 Score=107.23 Aligned_cols=86 Identities=27% Similarity=0.399 Sum_probs=76.9
Q ss_pred CCceEEEEEeCCCCCChhHHHHHHHHHHHHHHhHcCCCCeEEEEEeecCCcEEEcCCCcCHHHHHHHHhcCCC-------
Q 006254 560 AGALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPC------- 632 (653)
Q Consensus 560 ~~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~ay~~rd~v~li~F~~~~a~~~lp~t~~~~~~~~~L~~l~~------- 632 (653)
.+..++||||+||||. .++..++.++..++...+..+|+|+||.|+ +.+.++.|+|.+...+...|+.+.+
T Consensus 52 ~p~~vvlvlD~SgSM~-~~~~~a~~a~~~~l~~~l~~~d~v~lv~f~-~~~~~~~~~t~~~~~l~~~l~~l~~~~~~~~~ 129 (296)
T TIGR03436 52 LPLTVGLVIDTSGSMR-NDLDRARAAAIRFLKTVLRPNDRVFVVTFN-TRLRLLQDFTSDPRLLEAALNRLKPPLRTDYN 129 (296)
T ss_pred CCceEEEEEECCCCch-HHHHHHHHHHHHHHHhhCCCCCEEEEEEeC-CceeEeecCCCCHHHHHHHHHhccCCCccccc
Confidence 4789999999999997 478899999999997767899999999996 5688889999999999999999987
Q ss_pred --------CCCCchHHHHHHHHH
Q 006254 633 --------GGGSPLAHGLSMGWA 647 (653)
Q Consensus 633 --------gG~Tpl~~gl~~a~~ 647 (653)
+|+|+|..||..|+.
T Consensus 130 ~~~~~~~~~g~T~l~~al~~aa~ 152 (296)
T TIGR03436 130 SSGAFVRDGGGTALYDAITLAAL 152 (296)
T ss_pred cccccccCCCcchhHHHHHHHHH
Confidence 899999999877754
No 234
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=98.84 E-value=1.2e-08 Score=119.40 Aligned_cols=90 Identities=21% Similarity=0.317 Sum_probs=73.7
Q ss_pred CceEEEEEeCCCCCCh-hHHHHHHHHHHHHHHhHcCCCCeEEEEEeecCCcEEEcCCCc-----CHHHHHHHHhcCCCCC
Q 006254 561 GALVIFVVDASGSMAL-NRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSR-----SIAMARKRLERLPCGG 634 (653)
Q Consensus 561 ~~~v~~vvD~SgSM~~-~r~~~ak~a~~~ll~~ay~~rd~v~li~F~~~~a~~~lp~t~-----~~~~~~~~L~~l~~gG 634 (653)
...|+||||+||||.+ +||..+|.|+..++...+..+|+||||+|++ .+.++.|++. +...+...|. +.++|
T Consensus 304 ~r~VVLVLDvSGSM~g~dRL~~lkqAA~~fL~~~l~~~DrVGLVtFss-sA~vl~pLt~Its~~dr~aL~~~L~-~~A~G 381 (863)
T TIGR00868 304 QRIVCLVLDKSGSMTVEDRLKRMNQAAKLFLLQTVEKGSWVGMVTFDS-AAYIKNELIQITSSAERDALTANLP-TAASG 381 (863)
T ss_pred CceEEEEEECCccccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEECC-ceeEeeccccCCcHHHHHHHHHhhc-cccCC
Confidence 4569999999999976 7999999999999888889999999999975 5778777763 3444444453 45899
Q ss_pred CCchHHHHHHHHHHHhhc
Q 006254 635 GSPLAHGLSMGWAKCGEE 652 (653)
Q Consensus 635 ~Tpl~~gl~~a~~~l~~~ 652 (653)
+|+|+.||..|+++|.+.
T Consensus 382 GT~I~~GL~~Alq~L~~~ 399 (863)
T TIGR00868 382 GTSICSGLKAAFQVIKKS 399 (863)
T ss_pred CCcHHHHHHHHHHHHHhc
Confidence 999999999999998753
No 235
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.83 E-value=3.9e-08 Score=106.58 Aligned_cols=222 Identities=16% Similarity=0.187 Sum_probs=139.8
Q ss_pred CCCCCCCceechHHHHHHH---HHhcccC--CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccc
Q 006254 89 RQFFPLAAVVGQDAIKTAL---LLGAIDR--EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWED 163 (653)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL---~~~av~p--~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~ 163 (653)
.+.|+|+.+|.-+.-..|. ...+-+| ...+++|+|+.|.|||+|++++.+.+-..
T Consensus 81 ~~~ytFdnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~-------------------- 140 (408)
T COG0593 81 NPKYTFDNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALAN-------------------- 140 (408)
T ss_pred CCCCchhheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhh--------------------
Confidence 4568888765544322222 2223334 35679999999999999999999986410
Q ss_pred cccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccC-CccccccccccccCceEEecccccCCH--HH
Q 006254 164 GLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTG-TTVFQPGLLAEAHRGVLYIDEINLLDE--GI 240 (653)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g-~~~~~~Gll~~A~~giL~IDEi~~l~~--~~ 240 (653)
..+..++.+.......+++ .++..+ ...|+.-+ +-.+|+||+|+.+.. ..
T Consensus 141 -----------------~~~a~v~y~~se~f~~~~v------~a~~~~~~~~Fk~~y----~~dlllIDDiq~l~gk~~~ 193 (408)
T COG0593 141 -----------------GPNARVVYLTSEDFTNDFV------KALRDNEMEKFKEKY----SLDLLLIDDIQFLAGKERT 193 (408)
T ss_pred -----------------CCCceEEeccHHHHHHHHH------HHHHhhhHHHHHHhh----ccCeeeechHhHhcCChhH
Confidence 0133445444332111111 122222 12233222 224899999998754 44
Q ss_pred HHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCC---cccHHHHhhh--cccccccCCCCHhhHHHHHHHHHHHH
Q 006254 241 SNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG---VVREHLLDRI--AINLSADLPMTFEDRVAAVGIATQFQ 315 (653)
Q Consensus 241 ~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg---~l~~aLldRf--~~~v~l~~p~~~~~r~~I~~~~~~~~ 315 (653)
+..+......-.. .| + .||.|+..-+. .+.+.|.+|| ++.+.+. |++.+.|..|+..
T Consensus 194 qeefFh~FN~l~~----~~-------k-qIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~-~Pd~e~r~aiL~k----- 255 (408)
T COG0593 194 QEEFFHTFNALLE----NG-------K-QIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIE-PPDDETRLAILRK----- 255 (408)
T ss_pred HHHHHHHHHHHHh----cC-------C-EEEEEcCCCchhhccccHHHHHHHhceeEEeeC-CCCHHHHHHHHHH-----
Confidence 5555555543210 01 1 46666654443 3569999999 5666777 6788888888763
Q ss_pred hhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHH
Q 006254 316 ERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDL 395 (653)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv 395 (653)
+.....+.++++++.+++..-.. +.|.+..++...-+.|.+.++ .||.+.+
T Consensus 256 ------------------------ka~~~~~~i~~ev~~~la~~~~~----nvReLegaL~~l~~~a~~~~~-~iTi~~v 306 (408)
T COG0593 256 ------------------------KAEDRGIEIPDEVLEFLAKRLDR----NVRELEGALNRLDAFALFTKR-AITIDLV 306 (408)
T ss_pred ------------------------HHHhcCCCCCHHHHHHHHHHhhc----cHHHHHHHHHHHHHHHHhcCc-cCcHHHH
Confidence 12234688999999999765332 578888888888888888888 9999999
Q ss_pred HHHHHHHcC
Q 006254 396 KKAVELVIL 404 (653)
Q Consensus 396 ~~A~~lvl~ 404 (653)
++++...+.
T Consensus 307 ~e~L~~~~~ 315 (408)
T COG0593 307 KEILKDLLR 315 (408)
T ss_pred HHHHHHhhc
Confidence 999985543
No 236
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.80 E-value=3.3e-08 Score=105.95 Aligned_cols=173 Identities=14% Similarity=0.100 Sum_probs=101.9
Q ss_pred CCceec-hHHHHHHHHHhcccCCCce-EEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccccc
Q 006254 94 LAAVVG-QDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEY 171 (653)
Q Consensus 94 f~~IvG-q~~~k~aL~~~av~p~~~g-VLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~ 171 (653)
|..|+| |+.+++.|.-+.-.....+ .||+||+|+||+++|+.+++.+- |.....+..|..|......
T Consensus 4 ~~~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~-----------c~~~~~~~~cg~C~~c~~~ 72 (329)
T PRK08058 4 WEQLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLF-----------CLERNGVEPCGTCTNCKRI 72 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHC-----------CCCCCCCCCCCcCHHHHHH
Confidence 677888 8888888865544344455 69999999999999999999863 4322223344444432111
Q ss_pred cccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHHHHHHcC
Q 006254 172 DTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEG 251 (653)
Q Consensus 172 ~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~l~~g 251 (653)
.... ...|..+... ..-++.-++...... ....| ..+..-|++|||++.++.+.+|+||..|++-
T Consensus 73 ~~~~-------hpD~~~i~~~---~~~i~id~ir~l~~~--~~~~~---~~~~~kvviI~~a~~~~~~a~NaLLK~LEEP 137 (329)
T PRK08058 73 DSGN-------HPDVHLVAPD---GQSIKKDQIRYLKEE--FSKSG---VESNKKVYIIEHADKMTASAANSLLKFLEEP 137 (329)
T ss_pred hcCC-------CCCEEEeccc---cccCCHHHHHHHHHH--HhhCC---cccCceEEEeehHhhhCHHHHHHHHHHhcCC
Confidence 0000 1112222111 011111111111100 00001 1234569999999999999999999999974
Q ss_pred ceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHH
Q 006254 252 VNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAV 308 (653)
Q Consensus 252 ~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~ 308 (653)
. ...++|.+++ ....+.+.+++|+..+ .+. |++.++..+.+
T Consensus 138 p-------------~~~~~Il~t~-~~~~ll~TIrSRc~~i-~~~-~~~~~~~~~~L 178 (329)
T PRK08058 138 S-------------GGTTAILLTE-NKHQILPTILSRCQVV-EFR-PLPPESLIQRL 178 (329)
T ss_pred C-------------CCceEEEEeC-ChHhCcHHHHhhceee-eCC-CCCHHHHHHHH
Confidence 2 3455666666 5668889999999777 777 44555544443
No 237
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=98.80 E-value=1e-08 Score=97.76 Aligned_cols=86 Identities=33% Similarity=0.439 Sum_probs=71.5
Q ss_pred eEEEEEeCCCCCCh-----hHHHHHHHHHHHHHHhHcCCCCeEEEEEeecCCcEEEcCCCcCHHHHHHHHhcCC----CC
Q 006254 563 LVIFVVDASGSMAL-----NRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLP----CG 633 (653)
Q Consensus 563 ~v~~vvD~SgSM~~-----~r~~~ak~a~~~ll~~ay~~rd~v~li~F~~~~a~~~lp~t~~~~~~~~~L~~l~----~g 633 (653)
+|+||+|.||||.. .|+..++.++..++.. + ..++|+|+.|++ ...+..|+|.+...+...|..+. ++
T Consensus 1 dvv~v~D~SgSM~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~v~l~~f~~-~~~~~~~~t~~~~~~~~~l~~~~~~~~~~ 77 (172)
T PF13519_consen 1 DVVFVLDNSGSMNGYDGNRTRIDQAKDALNELLAN-L-PGDRVGLVSFSD-SSRTLSPLTSDKDELKNALNKLSPQGMPG 77 (172)
T ss_dssp EEEEEEE-SGGGGTTTSSS-HHHHHHHHHHHHHHH-H-TTSEEEEEEEST-SCEEEEEEESSHHHHHHHHHTHHHHG--S
T ss_pred CEEEEEECCcccCCCCCCCcHHHHHHHHHHHHHHH-C-CCCEEEEEEecc-cccccccccccHHHHHHHhhcccccccCc
Confidence 58999999999965 4999999999999965 4 588999999975 57888999999999999988775 47
Q ss_pred CCCchHHHHHHHHHHHhh
Q 006254 634 GGSPLAHGLSMGWAKCGE 651 (653)
Q Consensus 634 G~Tpl~~gl~~a~~~l~~ 651 (653)
|+|++.+||..|.+++..
T Consensus 78 ~~t~~~~al~~a~~~~~~ 95 (172)
T PF13519_consen 78 GGTNLYDALQEAAKMLAS 95 (172)
T ss_dssp SS--HHHHHHHHHHHHHC
T ss_pred cCCcHHHHHHHHHHHHHh
Confidence 999999999999999875
No 238
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.78 E-value=3.6e-08 Score=113.07 Aligned_cols=57 Identities=11% Similarity=-0.122 Sum_probs=43.6
Q ss_pred cccCCCCCCCCceechHHHHHHHHHhcc---cCC-C-ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 85 DSYGRQFFPLAAVVGQDAIKTALLLGAI---DRE-I-GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 85 ~~~~~~~~~f~~IvGq~~~k~aL~~~av---~p~-~-~gVLL~GppGTGKT~lArala~~l~ 141 (653)
...+.+|..+++|+|+++.+..+...+. .+. . .-++|+||+|||||++++.++..+.
T Consensus 74 W~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 74 WVEKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred hHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4457789999999999988777632221 111 1 2299999999999999999999875
No 239
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.
Probab=98.77 E-value=3.7e-08 Score=96.58 Aligned_cols=89 Identities=16% Similarity=0.118 Sum_probs=68.0
Q ss_pred ceEEEEEeCCCCCCh-hHHHHHHHHHHHHHHhHcC--CCCeEEEEEeecCCcEEEcCCCc----CHHH---HHHHHhc-C
Q 006254 562 ALVIFVVDASGSMAL-NRMQNAKGAALKLLAESYT--CRDQVSIIPFRGDSAEVLLPPSR----SIAM---ARKRLER-L 630 (653)
Q Consensus 562 ~~v~~vvD~SgSM~~-~r~~~ak~a~~~ll~~ay~--~rd~v~li~F~~~~a~~~lp~t~----~~~~---~~~~L~~-l 630 (653)
.+|+||||.||||+. +|+..+|.++..++...+. .+.+||||+|++ .+..++|.+. +... +.+.|.. .
T Consensus 1 ~Dv~~vlD~SgSm~~~~~~~~~k~~~~~~~~~~~~~~~~~~vglv~Fs~-~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~ 79 (186)
T cd01471 1 LDLYLLVDGSGSIGYSNWVTHVVPFLHTFVQNLNISPDEINLYLVTFST-NAKELIRLSSPNSTNKDLALNAIRALLSLY 79 (186)
T ss_pred CcEEEEEeCCCCccchhhHHHHHHHHHHHHHhcccCCCceEEEEEEecC-CceEEEECCCccccchHHHHHHHHHHHhCc
Confidence 368999999999987 4699999999999976543 456899999964 5777777653 4444 3333333 3
Q ss_pred CCCCCCchHHHHHHHHHHHhh
Q 006254 631 PCGGGSPLAHGLSMGWAKCGE 651 (653)
Q Consensus 631 ~~gG~Tpl~~gl~~a~~~l~~ 651 (653)
..+|+|+++.||..|.+.+.+
T Consensus 80 ~~~G~T~l~~aL~~a~~~l~~ 100 (186)
T cd01471 80 YPNGSTNTTSALLVVEKHLFD 100 (186)
T ss_pred CCCCCccHHHHHHHHHHHhhc
Confidence 578999999999999988854
No 240
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.75 E-value=1.6e-07 Score=92.31 Aligned_cols=69 Identities=22% Similarity=0.273 Sum_probs=51.2
Q ss_pred cCceEEecccccCCHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhh
Q 006254 224 HRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFED 303 (653)
Q Consensus 224 ~~giL~IDEi~~l~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~ 303 (653)
...|++|||++.++...++.|+..|++.. ....+|.++| ....+.+++.+|+.. +.+. |++.++
T Consensus 96 ~~kviiide~~~l~~~~~~~Ll~~le~~~-------------~~~~~il~~~-~~~~l~~~i~sr~~~-~~~~-~~~~~~ 159 (188)
T TIGR00678 96 GRRVVIIEDAERMNEAAANALLKTLEEPP-------------PNTLFILITP-SPEKLLPTIRSRCQV-LPFP-PLSEEA 159 (188)
T ss_pred CeEEEEEechhhhCHHHHHHHHHHhcCCC-------------CCeEEEEEEC-ChHhChHHHHhhcEE-eeCC-CCCHHH
Confidence 45699999999999999999999998642 2345666666 446788999999964 4777 556665
Q ss_pred HHHHH
Q 006254 304 RVAAV 308 (653)
Q Consensus 304 r~~I~ 308 (653)
..+++
T Consensus 160 ~~~~l 164 (188)
T TIGR00678 160 LLQWL 164 (188)
T ss_pred HHHHH
Confidence 54443
No 241
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=98.75 E-value=2e-08 Score=95.80 Aligned_cols=88 Identities=24% Similarity=0.354 Sum_probs=71.0
Q ss_pred CceEEEEEeCCCCCChhHHHHHHHHHHHHHHhH----c-CCCCeEEEEEeecCCcEEEcCCCcCHHHHHHHHhcCCCCCC
Q 006254 561 GALVIFVVDASGSMALNRMQNAKGAALKLLAES----Y-TCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPCGGG 635 (653)
Q Consensus 561 ~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~a----y-~~rd~v~li~F~~~~a~~~lp~t~~~~~~~~~L~~l~~gG~ 635 (653)
..+++||+|+||||-+.++++.+..+..++... | ..+-.+++|+|+| .+.+..|.|.-.. =..-.|.++|+
T Consensus 3 RlP~~lllDtSgSM~Ge~IealN~Glq~m~~~Lkqdp~Ale~v~lsIVTF~~-~a~~~~pf~~~~n---F~~p~L~a~Gg 78 (207)
T COG4245 3 RLPCYLLLDTSGSMIGEPIEALNAGLQMMIDTLKQDPYALERVELSIVTFGG-PARVIQPFTDAAN---FNPPILTAQGG 78 (207)
T ss_pred CCCEEEEEecCcccccccHHHHHHHHHHHHHHHHhChhhhheeEEEEEEecC-cceEEechhhHhh---cCCCceecCCC
Confidence 468999999999999999999998888877443 2 2578899999976 6889998874222 13446788999
Q ss_pred CchHHHHHHHHHHHhhc
Q 006254 636 SPLAHGLSMGWAKCGEE 652 (653)
Q Consensus 636 Tpl~~gl~~a~~~l~~~ 652 (653)
|||++||.+|.+++.++
T Consensus 79 T~lGaAl~~a~d~Ie~~ 95 (207)
T COG4245 79 TPLGAALTLALDMIEER 95 (207)
T ss_pred CchHHHHHHHHHHHHHH
Confidence 99999999999998764
No 242
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein. Members of this protein family are restricted to the Proteobacteria. Each contains a C-terminal sortase-recognition motif, transmembrane domain, and basic residues cluster at the the C-terminus, and is encoded adjacent to a sortase gene. This protein is frequently the only sortase target in its genome, which is as unusual its occurrence in Gram-negative rather than Gram-positive genomes. Many bacteria with this system are marine. In addition to the LPXTG signal, members carry a vault protein inter-alpha-trypsin inhibitor domain (pfam08487) and a von Willebrand factor type A domain (pfam00092).
Probab=98.75 E-value=3.5e-08 Score=113.99 Aligned_cols=89 Identities=31% Similarity=0.422 Sum_probs=74.1
Q ss_pred cCCceEEEEEeCCCCCChhHHHHHHHHHHHHHHhHcCCCCeEEEEEeecCCcEEEcCCCc-----CHHHHHHHHhcCCCC
Q 006254 559 KAGALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSR-----SIAMARKRLERLPCG 633 (653)
Q Consensus 559 ~~~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~ay~~rd~v~li~F~~~~a~~~lp~t~-----~~~~~~~~L~~l~~g 633 (653)
+.+..++||||+||||.+.+|..+|.++..++. .+...|+|+||.|+ +.+..+.|.+. ++..+..+|..+.++
T Consensus 269 ~~p~~vvfvlD~SgSM~g~~i~~ak~al~~~l~-~L~~~d~~~ii~F~-~~~~~~~~~~~~~~~~~~~~a~~~i~~l~a~ 346 (596)
T TIGR03788 269 VLPRELVFVIDTSGSMAGESIEQAKSALLLALD-QLRPGDRFNIIQFD-SDVTLLFPVPVPATAHNLARARQFVAGLQAD 346 (596)
T ss_pred CCCceEEEEEECCCCCCCccHHHHHHHHHHHHH-hCCCCCEEEEEEEC-CcceEeccccccCCHHHHHHHHHHHhhCCCC
Confidence 446789999999999999999999998887774 56889999999996 45666655432 466778899999999
Q ss_pred CCCchHHHHHHHHHHH
Q 006254 634 GGSPLAHGLSMGWAKC 649 (653)
Q Consensus 634 G~Tpl~~gl~~a~~~l 649 (653)
|||+|..||..|++..
T Consensus 347 GgT~l~~aL~~a~~~~ 362 (596)
T TIGR03788 347 GGTEMAGALSAALRDD 362 (596)
T ss_pred CCccHHHHHHHHHHhh
Confidence 9999999999998764
No 243
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=98.73 E-value=7.4e-08 Score=92.14 Aligned_cols=87 Identities=16% Similarity=0.275 Sum_probs=68.0
Q ss_pred eEEEEEeCCCCCChhHHHHHHHHHHHHHHhHc--CCCCeEEEEEeecC-CcEEEcCCC--cCHHHHHHHHhcCCC-CCCC
Q 006254 563 LVIFVVDASGSMALNRMQNAKGAALKLLAESY--TCRDQVSIIPFRGD-SAEVLLPPS--RSIAMARKRLERLPC-GGGS 636 (653)
Q Consensus 563 ~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~ay--~~rd~v~li~F~~~-~a~~~lp~t--~~~~~~~~~L~~l~~-gG~T 636 (653)
+++||||+|+||.. ++...|..+..++.... ..+++||||+|++. .+.+.++++ .+...+.+.|..+.. ||+|
T Consensus 2 dv~~llD~S~Sm~~-~~~~~~~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~~~~l~~~~~~~~l~~~i~~l~~~gg~T 80 (163)
T cd01476 2 DLLFVLDSSGSVRG-KFEKYKKYIERIVEGLEIGPTATRVALITYSGRGRQRVRFNLPKHNDGEELLEKVDNLRFIGGTT 80 (163)
T ss_pred CEEEEEeCCcchhh-hHHHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCceEEEecCCCCCCHHHHHHHHHhCccCCCCc
Confidence 68999999999975 45556666666664321 34899999999763 466666665 467788899999974 8999
Q ss_pred chHHHHHHHHHHHh
Q 006254 637 PLAHGLSMGWAKCG 650 (653)
Q Consensus 637 pl~~gl~~a~~~l~ 650 (653)
+++.||..|++++.
T Consensus 81 ~l~~aL~~a~~~l~ 94 (163)
T cd01476 81 ATGAAIEVALQQLD 94 (163)
T ss_pred cHHHHHHHHHHHhc
Confidence 99999999999984
No 244
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.73 E-value=1.2e-07 Score=100.72 Aligned_cols=172 Identities=17% Similarity=0.189 Sum_probs=101.2
Q ss_pred CCCceechHHHHHHHHHhcccCC-CceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccccc
Q 006254 93 PLAAVVGQDAIKTALLLGAIDRE-IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEY 171 (653)
Q Consensus 93 ~f~~IvGq~~~k~aL~~~av~p~-~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~ 171 (653)
.|++|+||+.+++.|.-+.-... .+..||+||.|+||+++|++++..+- |...|..|. .|. +.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~ll-----------c~~~c~~c~--~~~--~~- 65 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLL-----------SQGSPSKNI--RRR--LE- 65 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHc-----------CCCCCCCcH--hcc--cc-
Confidence 58899999999999876554433 36799999999999999999999874 332222221 122 10
Q ss_pred cccccccccccCCCeEeCCCC-Ccccce--------ee-------ecchh--hhhccCCccccccccccccCceEEeccc
Q 006254 172 DTAGNLKTQIARSPFVQIPLG-VTEDRL--------IG-------SVDVE--ESVKTGTTVFQPGLLAEAHRGVLYIDEI 233 (653)
Q Consensus 172 ~~~~~~~~~~~~~~fv~l~~~-~~~~~l--------~G-------~~d~~--~~~~~g~~~~~~Gll~~A~~giL~IDEi 233 (653)
.+ ...-+..+.+. ...... .| .+-++ +.+. ....... ..+..-|++||++
T Consensus 66 --~~------~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~---~~l~~~p-~~~~~kVvII~~a 133 (314)
T PRK07399 66 --EG------NHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIK---RFLSRPP-LEAPRKVVVIEDA 133 (314)
T ss_pred --cC------CCCCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHH---HHHccCc-ccCCceEEEEEch
Confidence 00 00111111111 001110 00 00000 0000 0000000 1234569999999
Q ss_pred ccCCHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHH
Q 006254 234 NLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVG 309 (653)
Q Consensus 234 ~~l~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~ 309 (653)
+.|+...+|+||..|++-. +.++|..++ .+..|.+.+++|+..+ .+. |++.++..+++.
T Consensus 134 e~m~~~aaNaLLK~LEEPp--------------~~~fILi~~-~~~~Ll~TI~SRcq~i-~f~-~l~~~~~~~~L~ 192 (314)
T PRK07399 134 ETMNEAAANALLKTLEEPG--------------NGTLILIAP-SPESLLPTIVSRCQII-PFY-RLSDEQLEQVLK 192 (314)
T ss_pred hhcCHHHHHHHHHHHhCCC--------------CCeEEEEEC-ChHhCcHHHHhhceEE-ecC-CCCHHHHHHHHH
Confidence 9999999999999998642 344555555 6678889999998666 776 556666555554
No 245
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.71 E-value=1.3e-07 Score=100.63 Aligned_cols=158 Identities=15% Similarity=0.217 Sum_probs=94.3
Q ss_pred CCCceechHHHHHHHHHhcccCCCce-EEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccccc
Q 006254 93 PLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEY 171 (653)
Q Consensus 93 ~f~~IvGq~~~k~aL~~~av~p~~~g-VLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~ 171 (653)
.|++|+||+.+++.|..........+ .||+||+|+|||++|+.+++.+- |.....
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~-----------c~~~~~------------- 57 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKIL-----------GKSQQR------------- 57 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHc-----------CCCCCC-------------
Confidence 48999999999999866554444444 69999999999999999999763 311000
Q ss_pred cccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHHHHHHcC
Q 006254 172 DTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEG 251 (653)
Q Consensus 172 ~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~l~~g 251 (653)
....|..+... +..-++.-++......- ...| ..+..-|++||+++.++...+|+||..+++-
T Consensus 58 ----------~h~D~~~~~~~--~~~~i~v~~ir~~~~~~--~~~p---~~~~~kv~iI~~ad~m~~~a~naLLK~LEep 120 (313)
T PRK05564 58 ----------EYVDIIEFKPI--NKKSIGVDDIRNIIEEV--NKKP---YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEP 120 (313)
T ss_pred ----------CCCCeEEeccc--cCCCCCHHHHHHHHHHH--hcCc---ccCCceEEEEechhhcCHHHHHHHHHHhcCC
Confidence 01112222110 11111111111111000 0011 1234569999999999999999999999973
Q ss_pred ceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHH
Q 006254 252 VNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAA 307 (653)
Q Consensus 252 ~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I 307 (653)
. ...++|.+++ ....+.+.+.+|+..+ .+. +++.++....
T Consensus 121 p-------------~~t~~il~~~-~~~~ll~TI~SRc~~~-~~~-~~~~~~~~~~ 160 (313)
T PRK05564 121 P-------------KGVFIILLCE-NLEQILDTIKSRCQIY-KLN-RLSKEEIEKF 160 (313)
T ss_pred C-------------CCeEEEEEeC-ChHhCcHHHHhhceee-eCC-CcCHHHHHHH
Confidence 2 2334444443 4457889999999755 776 4455544333
No 246
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=98.68 E-value=1.3e-07 Score=93.60 Aligned_cols=93 Identities=17% Similarity=0.222 Sum_probs=73.7
Q ss_pred ccCCceEEEEEeCCCCCChhHHHHHHHHHHHHHHhHc--------CCCCeEEEEEeecCCcEEEcCCCc--CHHHHHHHH
Q 006254 558 RKAGALVIFVVDASGSMALNRMQNAKGAALKLLAESY--------TCRDQVSIIPFRGDSAEVLLPPSR--SIAMARKRL 627 (653)
Q Consensus 558 ~~~~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~ay--------~~rd~v~li~F~~~~a~~~lp~t~--~~~~~~~~L 627 (653)
...+..++||||.|+||+.++++.+|..+..++...- ....|||||+|. +.+.+..|++. +...+.+.|
T Consensus 16 ~~~~~DivfvlD~S~Sm~~~~f~~~k~fi~~~~~~~~~~~~~~~~~~~~rVGlV~fs-~~a~~~~~L~d~~~~~~~~~ai 94 (193)
T cd01477 16 KNLWLDIVFVVDNSKGMTQGGLWQVRATISSLFGSSSQIGTDYDDPRSTRVGLVTYN-SNATVVADLNDLQSFDDLYSQI 94 (193)
T ss_pred ccceeeEEEEEeCCCCcchhhHHHHHHHHHHHHhhccccccccCCCCCcEEEEEEcc-CceEEEEecccccCHHHHHHHH
Confidence 3448999999999999998889999999988775432 235899999996 56889989874 445555556
Q ss_pred h----cCCCCCCCchHHHHHHHHHHHhh
Q 006254 628 E----RLPCGGGSPLAHGLSMGWAKCGE 651 (653)
Q Consensus 628 ~----~l~~gG~Tpl~~gl~~a~~~l~~ 651 (653)
+ .+..+|+|.++.||..|.++|..
T Consensus 95 ~~~~~~~~~~ggT~ig~aL~~A~~~l~~ 122 (193)
T cd01477 95 QGSLTDVSSTNASYLDTGLQAAEQMLAA 122 (193)
T ss_pred HHHhhccccCCcchHHHHHHHHHHHHHh
Confidence 5 45577899999999999998863
No 247
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.67 E-value=1.8e-07 Score=90.08 Aligned_cols=158 Identities=18% Similarity=0.152 Sum_probs=87.1
Q ss_pred chHHHHHHHHHhcccCCCce-EEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccccccccccc
Q 006254 99 GQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNL 177 (653)
Q Consensus 99 Gq~~~k~aL~~~av~p~~~g-VLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~~~~~~~ 177 (653)
||+.+++.|.-..-.....+ +||+||+|+||+++|++++..+- |...... .|..|.........
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll-----------~~~~~~~-~c~~c~~c~~~~~~--- 65 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALL-----------CSNPNED-PCGECRSCRRIEEG--- 65 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC------------TT-CTT---SSSHHHHHHHTT---
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHc-----------CCCCCCC-CCCCCHHHHHHHhc---
Confidence 78888888865544444444 89999999999999999999874 4332222 33333321111000
Q ss_pred cccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHHHHHHcCceEEee
Q 006254 178 KTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVER 257 (653)
Q Consensus 178 ~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~l~~g~~~v~r 257 (653)
....|+.+...-. .+-++--++..-...- .-... .+..-|++|||++.|..+.+|+||..|++-.
T Consensus 66 ----~~~d~~~~~~~~~-~~~i~i~~ir~i~~~~----~~~~~-~~~~KviiI~~ad~l~~~a~NaLLK~LEepp----- 130 (162)
T PF13177_consen 66 ----NHPDFIIIKPDKK-KKSIKIDQIREIIEFL----SLSPS-EGKYKVIIIDEADKLTEEAQNALLKTLEEPP----- 130 (162)
T ss_dssp -----CTTEEEEETTTS-SSSBSHHHHHHHHHHC----TSS-T-TSSSEEEEEETGGGS-HHHHHHHHHHHHSTT-----
T ss_pred ----cCcceEEEecccc-cchhhHHHHHHHHHHH----HHHHh-cCCceEEEeehHhhhhHHHHHHHHHHhcCCC-----
Confidence 1222333321110 0011211111111000 00000 1234599999999999999999999999863
Q ss_pred CCeeEEeecCcEEEEEecCCCCcccHHHHhhhccccccc
Q 006254 258 EGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSAD 296 (653)
Q Consensus 258 ~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~ 296 (653)
.+..+|.+++ ....+.+.+++|+-.+ .+.
T Consensus 131 --------~~~~fiL~t~-~~~~il~TI~SRc~~i-~~~ 159 (162)
T PF13177_consen 131 --------ENTYFILITN-NPSKILPTIRSRCQVI-RFR 159 (162)
T ss_dssp --------TTEEEEEEES--GGGS-HHHHTTSEEE-EE-
T ss_pred --------CCEEEEEEEC-ChHHChHHHHhhceEE-ecC
Confidence 4566777777 7888889999998665 553
No 248
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=98.66 E-value=1.7e-07 Score=88.58 Aligned_cols=89 Identities=18% Similarity=0.256 Sum_probs=74.0
Q ss_pred eEEEEEeCCCCCChhHHHHHHHHHHHHHHhHcC--CCCeEEEEEeecCCcEEEcCCCcC--HHHHHHHHhcCCC-C-CCC
Q 006254 563 LVIFVVDASGSMALNRMQNAKGAALKLLAESYT--CRDQVSIIPFRGDSAEVLLPPSRS--IAMARKRLERLPC-G-GGS 636 (653)
Q Consensus 563 ~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~ay~--~rd~v~li~F~~~~a~~~lp~t~~--~~~~~~~L~~l~~-g-G~T 636 (653)
+|+||||+||||...++..++.++..++..... .+++++||+|.+ ......+++.. ...+...|..+.. + |+|
T Consensus 2 di~~llD~S~Sm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~f~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~t 80 (161)
T cd01450 2 DIVFLLDGSESVGPENFEKVKDFIEKLVEKLDIGPDKTRVGLVQYSD-DVRVEFSLNDYKSKDDLLKAVKNLKYLGGGGT 80 (161)
T ss_pred cEEEEEeCCCCcCHHHHHHHHHHHHHHHHheeeCCCceEEEEEEEcC-CceEEEECCCCCCHHHHHHHHHhcccCCCCCc
Confidence 689999999999988999999999999865543 399999999975 57777888765 7888888887754 3 389
Q ss_pred chHHHHHHHHHHHhhc
Q 006254 637 PLAHGLSMGWAKCGEE 652 (653)
Q Consensus 637 pl~~gl~~a~~~l~~~ 652 (653)
++..||..+.+.+.+.
T Consensus 81 ~~~~al~~a~~~~~~~ 96 (161)
T cd01450 81 NTGKALQYALEQLFSE 96 (161)
T ss_pred cHHHHHHHHHHHhccc
Confidence 9999999999988653
No 249
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=98.66 E-value=9.5e-08 Score=90.75 Aligned_cols=84 Identities=30% Similarity=0.379 Sum_probs=70.1
Q ss_pred eEEEEEeCCCCCChhHHHHHHHHHHHHHHhHcCCCCeEEEEEeecCCcEEEcCC----C-cCHHHHHHHHhcCCC-CCCC
Q 006254 563 LVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPP----S-RSIAMARKRLERLPC-GGGS 636 (653)
Q Consensus 563 ~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~ay~~rd~v~li~F~~~~a~~~lp~----t-~~~~~~~~~L~~l~~-gG~T 636 (653)
.|+||||+|+||.+.+ ..+|.++..++ +....+|+|.||.|+. .+..+.|- + .....+..+|..+.+ +|+|
T Consensus 2 ~vvilvD~S~Sm~g~~-~~~k~al~~~l-~~L~~~d~fnii~f~~-~~~~~~~~~~~~~~~~~~~a~~~I~~~~~~~G~t 78 (155)
T PF13768_consen 2 DVVILVDTSGSMSGEK-ELVKDALRAIL-RSLPPGDRFNIIAFGS-SVRPLFPGLVPATEENRQEALQWIKSLEANSGGT 78 (155)
T ss_pred eEEEEEeCCCCCCCcH-HHHHHHHHHHH-HhCCCCCEEEEEEeCC-EeeEcchhHHHHhHHHHHHHHHHHHHhcccCCCc
Confidence 6899999999998877 89999998888 4589999999999964 45544443 2 366778899999999 9999
Q ss_pred chHHHHHHHHHHH
Q 006254 637 PLAHGLSMGWAKC 649 (653)
Q Consensus 637 pl~~gl~~a~~~l 649 (653)
.+..+|..|+..+
T Consensus 79 ~l~~aL~~a~~~~ 91 (155)
T PF13768_consen 79 DLLAALRAALALL 91 (155)
T ss_pred cHHHHHHHHHHhc
Confidence 9999999998875
No 250
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.64 E-value=1.9e-07 Score=99.16 Aligned_cols=162 Identities=19% Similarity=0.093 Sum_probs=95.6
Q ss_pred ceechHHHHHHHHHhcc-cCCCce-EEEECCCCCHHHHHHHHHHhhCCCCeee-ccccccCCCCCCCccccccccccccc
Q 006254 96 AVVGQDAIKTALLLGAI-DREIGG-IAISGRRGTAKTVMARGLHAILPPIEVV-VGSIANADPTCPDEWEDGLDEKAEYD 172 (653)
Q Consensus 96 ~IvGq~~~k~aL~~~av-~p~~~g-VLL~GppGTGKT~lArala~~l~~~~~v-~~~~~nc~p~~~~~~~~~~~~~~~~~ 172 (653)
+++|++.....+..... .....+ +||+||||||||++|.++++.+...... ..|... |..|..-..
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~---------~~~~~~~~~-- 70 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGH---------CRSCKLIPA-- 70 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccc---------hhhhhHHhh--
Confidence 57788877777755555 334566 9999999999999999999988521110 000000 011111000
Q ss_pred ccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHHHHHHcCc
Q 006254 173 TAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGV 252 (653)
Q Consensus 173 ~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~l~~g~ 252 (653)
.....|..+..+.....-+..-.+............ ....-|++|||++.|..+.+++|+..+++..
T Consensus 71 --------~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~~~-----~~~~kviiidead~mt~~A~nallk~lEep~ 137 (325)
T COG0470 71 --------GNHPDFLELNPSDLRKIDIIVEQVRELAEFLSESPL-----EGGYKVVIIDEADKLTEDAANALLKTLEEPP 137 (325)
T ss_pred --------cCCCceEEecccccCCCcchHHHHHHHHHHhccCCC-----CCCceEEEeCcHHHHhHHHHHHHHHHhccCC
Confidence 012234444433221110111111111111111110 1233599999999999999999999999754
Q ss_pred eEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhccccccc
Q 006254 253 NIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSAD 296 (653)
Q Consensus 253 ~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~ 296 (653)
.+..+|.+|| ....+.+.+.+|+..+ .+.
T Consensus 138 -------------~~~~~il~~n-~~~~il~tI~SRc~~i-~f~ 166 (325)
T COG0470 138 -------------KNTRFILITN-DPSKILPTIRSRCQRI-RFK 166 (325)
T ss_pred -------------CCeEEEEEcC-Chhhccchhhhcceee-ecC
Confidence 3567888888 8888889999999776 665
No 251
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.64 E-value=1.9e-07 Score=111.04 Aligned_cols=146 Identities=21% Similarity=0.214 Sum_probs=104.6
Q ss_pred CceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeEeC--CCCC
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQI--PLGV 193 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l--~~~~ 193 (653)
..|+||.|.||+|||.+..+||+..+ ..++.| +..+
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG------------------------------------------~kliRINLSeQT 1580 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTG------------------------------------------KKLIRINLSEQT 1580 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhc------------------------------------------CceEEeeccccc
Confidence 57999999999999999999999875 233333 3334
Q ss_pred cccceeeecchhhhhccCCcccccccc--ccccCceEEecccccCCHHHHHHHHHHHHcC-ceEEeeCCeeEEeecCcEE
Q 006254 194 TEDRLIGSVDVEESVKTGTTVFQPGLL--AEAHRGVLYIDEINLLDEGISNLLLNVLTEG-VNIVEREGISFKHPCKPLL 270 (653)
Q Consensus 194 ~~~~l~G~~d~~~~~~~g~~~~~~Gll--~~A~~giL~IDEi~~l~~~~~~~Ll~~l~~g-~~~v~r~G~s~~~p~~~~l 270 (653)
.--.|||+.-+. -..|...+....| +.-+||.+++||+|+.+..++.-|...++-+ ...+.....++....+|++
T Consensus 1581 dL~DLfGsd~Pv--e~~Gef~w~dapfL~amr~G~WVlLDEiNLaSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrV 1658 (4600)
T COG5271 1581 DLCDLFGSDLPV--EEGGEFRWMDAPFLHAMRDGGWVLLDEINLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRV 1658 (4600)
T ss_pred hHHHHhCCCCCc--ccCceeEecccHHHHHhhcCCEEEeehhhhhHHHHHHHHHHHHhhccccccccccceeeccCCeee
Confidence 344788873111 1346655554333 4448999999999999999999999999854 3445555667777779999
Q ss_pred EEEecCCC---C--cccHHHHhhhcccccccCCCCHhhHHHH
Q 006254 271 IATYNPEE---G--VVREHLLDRIAINLSADLPMTFEDRVAA 307 (653)
Q Consensus 271 IattNp~e---g--~l~~aLldRf~~~v~l~~p~~~~~r~~I 307 (653)
+||-||.. | -|+..+++||.++ .++. ...+....|
T Consensus 1659 FAaqNPq~qggGRKgLPkSF~nRFsvV-~~d~-lt~dDi~~I 1698 (4600)
T COG5271 1659 FAAQNPQDQGGGRKGLPKSFLNRFSVV-KMDG-LTTDDITHI 1698 (4600)
T ss_pred eeecCchhcCCCcccCCHHHhhhhheE-Eecc-cccchHHHH
Confidence 99999954 2 4889999999876 6764 344444444
No 252
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.63 E-value=6.4e-07 Score=89.37 Aligned_cols=155 Identities=23% Similarity=0.289 Sum_probs=99.2
Q ss_pred CCCCCCCceechHHHHHHHHHh---cc-cCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccc
Q 006254 89 RQFFPLAAVVGQDAIKTALLLG---AI-DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDG 164 (653)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~~~---av-~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~ 164 (653)
..++.+.+|+|-+..+.+|.-+ .+ .-...+|||+|-.|||||+++|++......
T Consensus 54 ~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~---------------------- 111 (287)
T COG2607 54 PDPIDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYAD---------------------- 111 (287)
T ss_pred CCCcCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHh----------------------
Confidence 3467889999999999999432 22 113457999999999999999999998741
Q ss_pred ccccccccccccccccccCCCeEeCCCCCcc--cceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHH-
Q 006254 165 LDEKAEYDTAGNLKTQIARSPFVQIPLGVTE--DRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGIS- 241 (653)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~--~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~- 241 (653)
....+|+++..-.. -.+++.+ -.....=|||.|++.-=..+..
T Consensus 112 -----------------~glrLVEV~k~dl~~Lp~l~~~L-----------------r~~~~kFIlFcDDLSFe~gd~~y 157 (287)
T COG2607 112 -----------------EGLRLVEVDKEDLATLPDLVELL-----------------RARPEKFILFCDDLSFEEGDDAY 157 (287)
T ss_pred -----------------cCCeEEEEcHHHHhhHHHHHHHH-----------------hcCCceEEEEecCCCCCCCchHH
Confidence 13346665543211 1222211 1112345999999865544444
Q ss_pred HHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCC----------CC---cccH--------HHHhhhcccccccCCCC
Q 006254 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE----------EG---VVRE--------HLLDRIAINLSADLPMT 300 (653)
Q Consensus 242 ~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~----------eg---~l~~--------aLldRf~~~v~l~~p~~ 300 (653)
..|-.+|+-| -...|.++++.||+|.. ++ ++-+ .|-|||++-+.+. |.+
T Consensus 158 K~LKs~LeG~---------ve~rP~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~-~~~ 227 (287)
T COG2607 158 KALKSALEGG---------VEGRPANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFY-PCD 227 (287)
T ss_pred HHHHHHhcCC---------cccCCCeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeeccc-CCC
Confidence 4455555533 23468899999999962 11 2221 5779999998887 667
Q ss_pred HhhHHHHHH
Q 006254 301 FEDRVAAVG 309 (653)
Q Consensus 301 ~~~r~~I~~ 309 (653)
.++-..|+.
T Consensus 228 Q~~YL~~V~ 236 (287)
T COG2607 228 QDEYLKIVD 236 (287)
T ss_pred HHHHHHHHH
Confidence 776555544
No 253
>PRK04132 replication factor C small subunit; Provisional
Probab=98.62 E-value=3.9e-07 Score=107.27 Aligned_cols=183 Identities=19% Similarity=0.174 Sum_probs=116.2
Q ss_pred EEEEC--CCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeEeCCCCCccc
Q 006254 119 IAISG--RRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTED 196 (653)
Q Consensus 119 VLL~G--ppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~ 196 (653)
-++.| |.+.||||+|++|++.+.. + ..+..|+.++.+. .
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g----------------~---------------------~~~~~~lElNASd--~ 607 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFG----------------E---------------------NWRHNFLELNASD--E 607 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhc----------------c---------------------cccCeEEEEeCCC--c
Confidence 45668 9999999999999998731 0 0134566666553 1
Q ss_pred ceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecC
Q 006254 197 RLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP 276 (653)
Q Consensus 197 ~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp 276 (653)
.|.-++...+..-. ...+ +......|+||||++.|+...|++|+..|++-. .++.+|.+||
T Consensus 608 --rgid~IR~iIk~~a-~~~~--~~~~~~KVvIIDEaD~Lt~~AQnALLk~lEep~-------------~~~~FILi~N- 668 (846)
T PRK04132 608 --RGINVIREKVKEFA-RTKP--IGGASFKIIFLDEADALTQDAQQALRRTMEMFS-------------SNVRFILSCN- 668 (846)
T ss_pred --ccHHHHHHHHHHHH-hcCC--cCCCCCEEEEEECcccCCHHHHHHHHHHhhCCC-------------CCeEEEEEeC-
Confidence 12112222221111 0111 111123599999999999999999999999632 2457888888
Q ss_pred CCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHH
Q 006254 277 EEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYL 356 (653)
Q Consensus 277 ~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l 356 (653)
....+.++|++|+..+ .+. |++.++..+.+..+ .. ..++.++++.+..|
T Consensus 669 ~~~kIi~tIrSRC~~i-~F~-~ls~~~i~~~L~~I-------------------------~~----~Egi~i~~e~L~~I 717 (846)
T PRK04132 669 YSSKIIEPIQSRCAIF-RFR-PLRDEDIAKRLRYI-------------------------AE----NEGLELTEEGLQAI 717 (846)
T ss_pred ChhhCchHHhhhceEE-eCC-CCCHHHHHHHHHHH-------------------------HH----hcCCCCCHHHHHHH
Confidence 5567779999998666 776 44555444333311 11 12467899998888
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHH
Q 006254 357 VMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (653)
Q Consensus 357 ~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~ 399 (653)
+..|. . +.|.++++++.+.. .. ..|+.++|..++
T Consensus 718 a~~s~---G-DlR~AIn~Lq~~~~---~~--~~It~~~V~~~~ 751 (846)
T PRK04132 718 LYIAE---G-DMRRAINILQAAAA---LD--DKITDENVFLVA 751 (846)
T ss_pred HHHcC---C-CHHHHHHHHHHHHH---hc--CCCCHHHHHHHh
Confidence 77653 2 58999999876543 22 468888887654
No 254
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.61 E-value=4.4e-08 Score=88.97 Aligned_cols=26 Identities=38% Similarity=0.373 Sum_probs=23.9
Q ss_pred CceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~ 141 (653)
...++|+||||||||++++.++..+.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccC
Confidence 35799999999999999999999886
No 255
>PRK10997 yieM hypothetical protein; Provisional
Probab=98.61 E-value=1.8e-07 Score=103.60 Aligned_cols=91 Identities=25% Similarity=0.207 Sum_probs=77.3
Q ss_pred CCceEEEEEeCCCCCChhHHHHHHHHHHHHHHhHcCCCCeEEEEEeecCCcEEEcCCCcCHHHHHHHHhcCCCCCCCchH
Q 006254 560 AGALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPCGGGSPLA 639 (653)
Q Consensus 560 ~~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~ay~~rd~v~li~F~~~~a~~~lp~t~~~~~~~~~L~~l~~gG~Tpl~ 639 (653)
..-+++++||+||||.|.+...||+++.+|+.-|.+.+|++++|.|++......+++......+.+.|... .||||.+.
T Consensus 322 ~kGpiII~VDtSGSM~G~ke~~AkalAaAL~~iAl~q~dr~~li~Fs~~i~~~~l~~~~gl~~ll~fL~~~-f~GGTDl~ 400 (487)
T PRK10997 322 PRGPFIVCVDTSGSMGGFNEQCAKAFCLALMRIALAENRRCYIMLFSTEVVTYELTGPDGLEQAIRFLSQS-FRGGTDLA 400 (487)
T ss_pred CCCcEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCceeeccCCccCHHHHHHHHHHh-cCCCCcHH
Confidence 36789999999999987777889999999999999999999999998654444467777888888888755 68999999
Q ss_pred HHHHHHHHHHhh
Q 006254 640 HGLSMGWAKCGE 651 (653)
Q Consensus 640 ~gl~~a~~~l~~ 651 (653)
.+|..+++.+.+
T Consensus 401 ~aL~~al~~l~~ 412 (487)
T PRK10997 401 PCLRAIIEKMQG 412 (487)
T ss_pred HHHHHHHHHHcc
Confidence 999999988764
No 256
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=5e-07 Score=105.83 Aligned_cols=134 Identities=25% Similarity=0.342 Sum_probs=90.1
Q ss_pred CceechHHHHHHHHHhcc-------cC-CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccccc
Q 006254 95 AAVVGQDAIKTALLLGAI-------DR-EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLD 166 (653)
Q Consensus 95 ~~IvGq~~~k~aL~~~av-------~p-~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~ 166 (653)
..|+||+++..++-.+.. +| ....+||.||.|+|||-||++|+..+-.
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fg------------------------ 617 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFG------------------------ 617 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcC------------------------
Confidence 458999999998844332 22 3455999999999999999999998741
Q ss_pred ccccccccccccccccCCCeEeCCCCCcc--cceeeecchhhhhccCCcccc-ccccccc----cCceEEecccccCCHH
Q 006254 167 EKAEYDTAGNLKTQIARSPFVQIPLGVTE--DRLIGSVDVEESVKTGTTVFQ-PGLLAEA----HRGVLYIDEINLLDEG 239 (653)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~fv~l~~~~~~--~~l~G~~d~~~~~~~g~~~~~-~Gll~~A----~~giL~IDEi~~l~~~ 239 (653)
....|+.+..+... +++.|.-. |..-.. -|.|.++ -..||+||||++.++.
T Consensus 618 ---------------se~~~IriDmse~~evskligsp~-------gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh~~ 675 (898)
T KOG1051|consen 618 ---------------SEENFIRLDMSEFQEVSKLIGSPP-------GYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPD 675 (898)
T ss_pred ---------------CccceEEechhhhhhhhhccCCCc-------ccccchhHHHHHHHHhcCCceEEEEechhhcCHH
Confidence 13455655544311 23333211 111111 1234433 3469999999999999
Q ss_pred HHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecC
Q 006254 240 ISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP 276 (653)
Q Consensus 240 ~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp 276 (653)
+++.|++++++|+++ ...|..+++. +.+||.|+|-
T Consensus 676 v~n~llq~lD~Grlt-Ds~Gr~Vd~k-N~I~IMTsn~ 710 (898)
T KOG1051|consen 676 VLNILLQLLDRGRLT-DSHGREVDFK-NAIFIMTSNV 710 (898)
T ss_pred HHHHHHHHHhcCccc-cCCCcEeecc-ceEEEEeccc
Confidence 999999999999953 3345555554 6889999885
No 257
>smart00327 VWA von Willebrand factor (vWF) type A domain. VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.
Probab=98.58 E-value=5e-07 Score=86.48 Aligned_cols=88 Identities=35% Similarity=0.474 Sum_probs=76.6
Q ss_pred ceEEEEEeCCCCCChhHHHHHHHHHHHHHHhHcCC--CCeEEEEEeecCCcEEEcCC--CcCHHHHHHHHhcCC--CCCC
Q 006254 562 ALVIFVVDASGSMALNRMQNAKGAALKLLAESYTC--RDQVSIIPFRGDSAEVLLPP--SRSIAMARKRLERLP--CGGG 635 (653)
Q Consensus 562 ~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~ay~~--rd~v~li~F~~~~a~~~lp~--t~~~~~~~~~L~~l~--~gG~ 635 (653)
..++||||.|+||...++..++.++..++...... .+++++++|++ .....+|+ +.+...+...+..+. .+|+
T Consensus 2 ~~v~l~vD~S~SM~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ii~f~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 80 (177)
T smart00327 2 LDVVFLLDGSGSMGPNRFEKAKEFVLKLVEQLDIGPDGDRVGLVTFSD-DATVLFPLNDSRSKDALLEALASLSYKLGGG 80 (177)
T ss_pred ccEEEEEeCCCccchHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCC-CceEEEcccccCCHHHHHHHHHhcCCCCCCC
Confidence 57999999999998789999999999998665444 99999999975 56667777 789999999999998 5999
Q ss_pred CchHHHHHHHHHHHh
Q 006254 636 SPLAHGLSMGWAKCG 650 (653)
Q Consensus 636 Tpl~~gl~~a~~~l~ 650 (653)
|.+..+|..+...+.
T Consensus 81 ~~~~~al~~~~~~~~ 95 (177)
T smart00327 81 TNLGAALQYALENLF 95 (177)
T ss_pred chHHHHHHHHHHHhc
Confidence 999999999999875
No 258
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=98.56 E-value=3.7e-07 Score=98.92 Aligned_cols=212 Identities=16% Similarity=0.114 Sum_probs=127.3
Q ss_pred CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeEeCCCCCc
Q 006254 115 EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVT 194 (653)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~ 194 (653)
...++++.||+|||||+++.+|..... | . .. .-.+
T Consensus 208 ~~~Nli~lGp~GTGKThla~~l~~~~a-----------~---------------------------~-sG------~f~T 242 (449)
T TIGR02688 208 PNYNLIELGPKGTGKSYIYNNLSPYVI-----------L---------------------------I-SG------GTIT 242 (449)
T ss_pred cCCcEEEECCCCCCHHHHHHHHhHHHH-----------H---------------------------H-cC------CcCc
Confidence 457899999999999999999876520 0 0 01 1133
Q ss_pred ccceeeecchhhhhccCCccccccccccccCceEEecccccCC----HHHHHHHHHHHHcCceEEeeCCeeEEeecCcEE
Q 006254 195 EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLD----EGISNLLLNVLTEGVNIVEREGISFKHPCKPLL 270 (653)
Q Consensus 195 ~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~----~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~l 270 (653)
...||..+- + -..|.+... -+|+|||+..++ .+.++.|.+.|++|. ++|...+....+.+++
T Consensus 243 ~a~Lf~~L~------~----~~lg~v~~~--DlLI~DEvgylp~~~~~~~v~imK~yMesg~--fsRG~~~~~a~as~vf 308 (449)
T TIGR02688 243 VAKLFYNIS------T----RQIGLVGRW--DVVAFDEVATLKFAKPKELIGILKNYMESGS--FTRGDETKSSDASFVF 308 (449)
T ss_pred HHHHHHHHH------H----HHHhhhccC--CEEEEEcCCCCcCCchHHHHHHHHHHHHhCc--eeccceeeeeeeEEEE
Confidence 344555321 1 223444443 499999999863 457899999999998 8887766677778888
Q ss_pred EEEecCC-C-------------Ccc-cHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHH
Q 006254 271 IATYNPE-E-------------GVV-REHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQ 335 (653)
Q Consensus 271 IattNp~-e-------------g~l-~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 335 (653)
+|-.|.. + ..+ +.||+|||... ++.. + |.+.... -|...|--..+-+.+-
T Consensus 309 vGNi~~~v~~~~~~~~Lf~~lP~~~~DsAflDRiH~y--iPGW---e----ipk~~~e------~~t~~yGl~~DylsE~ 373 (449)
T TIGR02688 309 LGNVPLTSEHMVKNSDLFSPLPEFMRDSAFLDRIHGY--LPGW---E----IPKIRKE------MFSNGYGFVVDYFAEA 373 (449)
T ss_pred EcccCCcchhhcCcccccccCChhhhhhHHHHhhhcc--CCCC---c----CccCCHH------HcccCCcchHHHHHHH
Confidence 8877631 1 112 35899998655 3321 1 1111111 1112222222222222
Q ss_pred HHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHH-cCCCCccHHHHHHHHHHHcCCCcc
Q 006254 336 IILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAAL-EGREKVNVDDLKKAVELVILPRSI 408 (653)
Q Consensus 336 i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal-~gr~~Vt~eDv~~A~~lvl~hR~~ 408 (653)
+..-|+ ...++. ++....+ .+..+.|....+-++..++..| .=...++.+|+++.+++++--|++
T Consensus 374 l~~lR~----~~~~~~-~~~~~~l---~~~~~~RD~~aV~kt~SgllKLL~P~~~~~~ee~~~~l~~Ale~Rrr 439 (449)
T TIGR02688 374 LRELRE----REYADI-VDRHFSL---SPNLNTRDVIAVKKTFSGLMKILFPHGTITKEEFTECLEPALEGRQR 439 (449)
T ss_pred HHHHHh----hHHHHh-hhhheec---CCCcchhhHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 222221 112211 1111111 2334789999999999888877 445679999999999999998876
No 259
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.55 E-value=6.9e-07 Score=95.58 Aligned_cols=153 Identities=15% Similarity=0.124 Sum_probs=88.4
Q ss_pred CceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeEeCCCCCcc
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTE 195 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~ 195 (653)
.+.+||.||+|+||+++|+.+++.+ +|.-......|..|......... ....+..+...-.
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~l-----------lC~~~~~~~~Cg~C~sC~~~~~g-------~HPD~~~i~~~~~- 82 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAAL-----------LCEAPQGGGACGSCKGCQLLRAG-------SHPDNFVLEPEEA- 82 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHH-----------cCCCCCCCCCCCCCHHHHHHhcC-------CCCCEEEEeccCC-
Confidence 4559999999999999999999987 35321223345544432111111 1122333322100
Q ss_pred cceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEec
Q 006254 196 DRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYN 275 (653)
Q Consensus 196 ~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattN 275 (653)
...++.-++.. +. ......| ..+..-|++||+++.|+...+|+||..+++- |.+..+|.+|+
T Consensus 83 ~~~i~id~iR~-l~-~~~~~~~---~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEP-------------p~~~~fiL~t~ 144 (328)
T PRK05707 83 DKTIKVDQVRE-LV-SFVVQTA---QLGGRKVVLIEPAEAMNRNAANALLKSLEEP-------------SGDTVLLLISH 144 (328)
T ss_pred CCCCCHHHHHH-HH-HHHhhcc---ccCCCeEEEECChhhCCHHHHHHHHHHHhCC-------------CCCeEEEEEEC
Confidence 01122111111 10 0000011 1223459999999999999999999999974 23456666666
Q ss_pred CCCCcccHHHHhhhcccccccCCCCHhhHHHHH
Q 006254 276 PEEGVVREHLLDRIAINLSADLPMTFEDRVAAV 308 (653)
Q Consensus 276 p~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~ 308 (653)
....+.+.+++|+..+ .+. |++.++-.+.+
T Consensus 145 -~~~~ll~TI~SRc~~~-~~~-~~~~~~~~~~L 174 (328)
T PRK05707 145 -QPSRLLPTIKSRCQQQ-ACP-LPSNEESLQWL 174 (328)
T ss_pred -ChhhCcHHHHhhceee-eCC-CcCHHHHHHHH
Confidence 6666889999999886 776 44555444333
No 260
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.55 E-value=8.2e-07 Score=95.23 Aligned_cols=68 Identities=18% Similarity=0.128 Sum_probs=52.6
Q ss_pred CceEEecccccCCHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhH
Q 006254 225 RGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDR 304 (653)
Q Consensus 225 ~giL~IDEi~~l~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r 304 (653)
.-|++||++++|+....|+||..+++- |.+.++|.+|+ .+..|.|.+++|+..+ .+. |++.++.
T Consensus 133 ~kV~iI~~ae~m~~~AaNaLLKtLEEP-------------p~~t~fiL~t~-~~~~LLpTI~SRcq~i-~~~-~~~~~~~ 196 (342)
T PRK06964 133 ARVVVLYPAEALNVAAANALLKTLEEP-------------PPGTVFLLVSA-RIDRLLPTILSRCRQF-PMT-VPAPEAA 196 (342)
T ss_pred ceEEEEechhhcCHHHHHHHHHHhcCC-------------CcCcEEEEEEC-ChhhCcHHHHhcCEEE-Eec-CCCHHHH
Confidence 459999999999999999999999964 34556677766 7788889999999654 777 4566655
Q ss_pred HHHH
Q 006254 305 VAAV 308 (653)
Q Consensus 305 ~~I~ 308 (653)
.+.+
T Consensus 197 ~~~L 200 (342)
T PRK06964 197 AAWL 200 (342)
T ss_pred HHHH
Confidence 4443
No 261
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=98.55 E-value=5.7e-07 Score=91.13 Aligned_cols=88 Identities=13% Similarity=0.219 Sum_probs=72.4
Q ss_pred CceEEEEEeCCCCCChhHHHHHHHHHHHHHHhHc--CCCCeEEEEEeecCCcEEEcCCC--cCHHHHHHHHhcCCC-CCC
Q 006254 561 GALVIFVVDASGSMALNRMQNAKGAALKLLAESY--TCRDQVSIIPFRGDSAEVLLPPS--RSIAMARKRLERLPC-GGG 635 (653)
Q Consensus 561 ~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~ay--~~rd~v~li~F~~~~a~~~lp~t--~~~~~~~~~L~~l~~-gG~ 635 (653)
+..|+||||.||||+..+++.+|..+..++.... ...++||||.|+ ..+.+..|++ .+...+...|..+.. ||+
T Consensus 2 ~~DlvfllD~S~Sm~~~~~~~~k~f~~~l~~~l~~~~~~~rvglv~fs-~~~~~~~~l~~~~~~~~l~~~i~~i~~~~~~ 80 (224)
T cd01475 2 PTDLVFLIDSSRSVRPENFELVKQFLNQIIDSLDVGPDATRVGLVQYS-STVKQEFPLGRFKSKADLKRAVRRMEYLETG 80 (224)
T ss_pred CccEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcccCCCccEEEEEEec-CceeEEecccccCCHHHHHHHHHhCcCCCCC
Confidence 5789999999999998899999999999985432 246899999996 5588888887 466778888888854 788
Q ss_pred CchHHHHHHHHHHH
Q 006254 636 SPLAHGLSMGWAKC 649 (653)
Q Consensus 636 Tpl~~gl~~a~~~l 649 (653)
|.++.||..|.+.+
T Consensus 81 t~tg~AL~~a~~~~ 94 (224)
T cd01475 81 TMTGLAIQYAMNNA 94 (224)
T ss_pred ChHHHHHHHHHHHh
Confidence 99999999888653
No 262
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=98.51 E-value=5.4e-07 Score=89.53 Aligned_cols=86 Identities=21% Similarity=0.213 Sum_probs=69.8
Q ss_pred CceEEEEEeCCCCCCh-------hHHHHHHHHHHHHHHhHcC-CCCeEEEEEeecCCcEEEcCCCcCHHHHHHHHhcCCC
Q 006254 561 GALVIFVVDASGSMAL-------NRMQNAKGAALKLLAESYT-CRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPC 632 (653)
Q Consensus 561 ~~~v~~vvD~SgSM~~-------~r~~~ak~a~~~ll~~ay~-~rd~v~li~F~~~~a~~~lp~t~~~~~~~~~L~~l~~ 632 (653)
+..++|+||.||||+. +|+..+|.++..++.-+.. ..|.++++.|.+. ...+.|.+ ...+.+.+..+.+
T Consensus 2 ~~dvv~~ID~SgSM~~~~~~~~~~k~~~ak~~~~~l~~~~~~~D~d~i~l~~f~~~-~~~~~~~~--~~~v~~~~~~~~p 78 (199)
T cd01457 2 NRDYTLLIDKSGSMAEADEAKERSRWEEAQESTRALARKCEEYDSDGITVYLFSGD-FRRYDNVN--SSKVDQLFAENSP 78 (199)
T ss_pred CcCEEEEEECCCcCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCCCeEEEEecCC-ccccCCcC--HHHHHHHHhcCCC
Confidence 4579999999999964 4999999999999876543 4899999999754 44555666 7777788889989
Q ss_pred CCCCchHHHHHHHHHHH
Q 006254 633 GGGSPLAHGLSMGWAKC 649 (653)
Q Consensus 633 gG~Tpl~~gl~~a~~~l 649 (653)
+|+|+++.+|..++..+
T Consensus 79 ~G~T~l~~~l~~a~~~~ 95 (199)
T cd01457 79 DGGTNLAAVLQDALNNY 95 (199)
T ss_pred CCcCcHHHHHHHHHHHH
Confidence 99999999999887543
No 263
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=98.50 E-value=9.1e-07 Score=82.37 Aligned_cols=88 Identities=26% Similarity=0.415 Sum_probs=74.6
Q ss_pred eEEEEEeCCCCCChhHHHHHHHHHHHHHHhHcC--CCCeEEEEEeecCCcEEEcCCCc--CHHHHHHHHhcCC--CCCCC
Q 006254 563 LVIFVVDASGSMALNRMQNAKGAALKLLAESYT--CRDQVSIIPFRGDSAEVLLPPSR--SIAMARKRLERLP--CGGGS 636 (653)
Q Consensus 563 ~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~ay~--~rd~v~li~F~~~~a~~~lp~t~--~~~~~~~~L~~l~--~gG~T 636 (653)
.++|+||+|+||...++..++.++..++...-. ..++++++.|++ .....++++. +...+...+..+. .+|+|
T Consensus 2 ~v~~viD~S~Sm~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~f~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 80 (161)
T cd00198 2 DIVFLLDVSGSMGGEKLDKAKEALKALVSSLSASPPGDRVGLVTFGS-NARVVLPLTTDTDKADLLEAIDALKKGLGGGT 80 (161)
T ss_pred cEEEEEeCCCCcCcchHHHHHHHHHHHHHhcccCCCCcEEEEEEecC-ccceeecccccCCHHHHHHHHHhcccCCCCCc
Confidence 589999999999667899999999999854432 489999999975 5777788776 7888888898887 89999
Q ss_pred chHHHHHHHHHHHhh
Q 006254 637 PLAHGLSMGWAKCGE 651 (653)
Q Consensus 637 pl~~gl~~a~~~l~~ 651 (653)
++..+|..+.+.+..
T Consensus 81 ~~~~al~~~~~~~~~ 95 (161)
T cd00198 81 NIGAALRLALELLKS 95 (161)
T ss_pred cHHHHHHHHHHHhcc
Confidence 999999999998864
No 264
>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.50 E-value=5.5e-07 Score=98.07 Aligned_cols=101 Identities=24% Similarity=0.256 Sum_probs=86.4
Q ss_pred cchhhhhhccCCceEEEEEeCCCCCChhHHHHHHHHHHHHHHhHcCCCCeEEEEEeecCCcEE-EcCCCcCHHHHHHHHh
Q 006254 550 DMRAKRMARKAGALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEV-LLPPSRSIAMARKRLE 628 (653)
Q Consensus 550 dl~~~~~~~~~~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~ay~~rd~v~li~F~~~~a~~-~lp~t~~~~~~~~~L~ 628 (653)
.|..++......-+|+++||+||||.|.++.-||+.+.+|+..|...+-++.++.|+....++ +-++..+...+.+.|.
T Consensus 261 kLl~Yr~~gk~~GpvilllD~SGSM~G~~e~~AKAvalAl~~~alaenR~~~~~lF~s~~~~~el~~k~~~~~e~i~fL~ 340 (437)
T COG2425 261 KLLTYRLQGKSEGPVILLLDKSGSMSGFKEQWAKAVALALMRIALAENRDCYVILFDSEVIEYELYEKKIDIEELIEFLS 340 (437)
T ss_pred cchhhhhhcCCCCCEEEEEeCCCCcCCcHHHHHHHHHHHHHHHHHHhccceEEEEecccceeeeecCCccCHHHHHHHHh
Confidence 455555666666899999999999999999999999999999999999999999998744444 3456679999999999
Q ss_pred cCCCCCCCchHHHHHHHHHHHhh
Q 006254 629 RLPCGGGSPLAHGLSMGWAKCGE 651 (653)
Q Consensus 629 ~l~~gG~Tpl~~gl~~a~~~l~~ 651 (653)
...+|| |.+..+|..|.+-+++
T Consensus 341 ~~f~GG-TD~~~~l~~al~~~k~ 362 (437)
T COG2425 341 YVFGGG-TDITKALRSALEDLKS 362 (437)
T ss_pred hhcCCC-CChHHHHHHHHHHhhc
Confidence 888888 9999999999998874
No 265
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.50 E-value=1.2e-06 Score=93.36 Aligned_cols=167 Identities=13% Similarity=0.110 Sum_probs=95.7
Q ss_pred hHHHHHHHHHhcccC-CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccccccccccccccccc
Q 006254 100 QDAIKTALLLGAIDR-EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLK 178 (653)
Q Consensus 100 q~~~k~aL~~~av~p-~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~~~~~~~~ 178 (653)
+...++.|.-+.-.. ..+..||.||.|+||+++|+.+++.+ +|........|..|..........
T Consensus 7 ~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~l-----------lC~~~~~~~~Cg~C~sC~~~~~g~--- 72 (325)
T PRK06871 7 LQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWL-----------MCQTPQGDQPCGQCHSCHLFQAGN--- 72 (325)
T ss_pred hHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHH-----------cCCCCCCCCCCCCCHHHHHHhcCC---
Confidence 445555564443322 23568899999999999999999987 463322334555544321111111
Q ss_pred ccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHHHHHHcCceEEeeC
Q 006254 179 TQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVERE 258 (653)
Q Consensus 179 ~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~l~~g~~~v~r~ 258 (653)
...|..+... +..-+|.-++. .+.... ...| .....-|++||+++.|+...+|+||..+++-.
T Consensus 73 ----HPD~~~i~p~--~~~~I~id~iR-~l~~~~-~~~~---~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp------ 135 (325)
T PRK06871 73 ----HPDFHILEPI--DNKDIGVDQVR-EINEKV-SQHA---QQGGNKVVYIQGAERLTEAAANALLKTLEEPR------ 135 (325)
T ss_pred ----CCCEEEEccc--cCCCCCHHHHH-HHHHHH-hhcc---ccCCceEEEEechhhhCHHHHHHHHHHhcCCC------
Confidence 1223333221 11122321111 110000 0000 11234599999999999999999999999753
Q ss_pred CeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHH
Q 006254 259 GISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAA 307 (653)
Q Consensus 259 G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I 307 (653)
.+.++|-+++ ....+.+.+++|+..+ .+. |+..++-.+.
T Consensus 136 -------~~~~fiL~t~-~~~~llpTI~SRC~~~-~~~-~~~~~~~~~~ 174 (325)
T PRK06871 136 -------PNTYFLLQAD-LSAALLPTIYSRCQTW-LIH-PPEEQQALDW 174 (325)
T ss_pred -------CCeEEEEEEC-ChHhCchHHHhhceEE-eCC-CCCHHHHHHH
Confidence 3455666666 6777889999999777 676 4455544333
No 266
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=98.48 E-value=6.2e-07 Score=90.79 Aligned_cols=118 Identities=22% Similarity=0.201 Sum_probs=76.7
Q ss_pred CCCcChhHhHHhhCCcchhhhccccccccceeeecCcchhhhhhccCCceEEEEEeCCCCCChhHHHHHHHHHHHHHHhH
Q 006254 514 IKRLAVDATLRAAAPYQKLRRERDTQKTRKVFVEKTDMRAKRMARKAGALVIFVVDASGSMALNRMQNAKGAALKLLAES 593 (653)
Q Consensus 514 ~~~i~~~aTl~~aap~q~~r~~~~~~~~~~~~i~~~dl~~~~~~~~~~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~a 593 (653)
.++|||.+||++...+ ++. +.++..+.+.++.+..++++||+||||.. . ...+..+++.+
T Consensus 25 ~~~lD~rrTir~~~r~-----------~g~----~~~l~~r~~r~~~~~~lvvl~DvSGSM~~--~---s~~~l~~~~~l 84 (222)
T PF05762_consen 25 RGRLDLRRTIRASLRT-----------GGE----PLRLVRRRRRPRKPRRLVVLCDVSGSMAG--Y---SEFMLAFLYAL 84 (222)
T ss_pred CCCCCHHHHHHHHHhc-----------CCC----cceeeccccccCCCccEEEEEeCCCChHH--H---HHHHHHHHHHH
Confidence 4589999999987621 111 33455555445556689999999999964 1 22344566666
Q ss_pred cCCCCeEEEEEeecCCcEEEcCCC-cCHHHHHHHHh--cCCCCCCCchHHHHHHHHHHHhh
Q 006254 594 YTCRDQVSIIPFRGDSAEVLLPPS-RSIAMARKRLE--RLPCGGGSPLAHGLSMGWAKCGE 651 (653)
Q Consensus 594 y~~rd~v~li~F~~~~a~~~lp~t-~~~~~~~~~L~--~l~~gG~Tpl~~gl~~a~~~l~~ 651 (653)
+....++.++.|...-.++.-+.. .+...+...+. ....||||.++.+|..+.+.+..
T Consensus 85 ~~~~~~~~~f~F~~~l~~vT~~l~~~~~~~~l~~~~~~~~~~~GgTdi~~aL~~~~~~~~~ 145 (222)
T PF05762_consen 85 QRQFRRVRVFVFSTRLTEVTPLLRRRDPEEALARLSALVQSFGGGTDIGQALREFLRQYAR 145 (222)
T ss_pred HHhCCCEEEEEEeeehhhhhhhhccCCHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhhc
Confidence 666679999999754222221222 24444444443 23489999999999999988763
No 267
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.45 E-value=3e-06 Score=88.43 Aligned_cols=82 Identities=22% Similarity=0.318 Sum_probs=53.8
Q ss_pred CceEEecccccCCH------HHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCc--ccHHHHhhhccccccc
Q 006254 225 RGVLYIDEINLLDE------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGV--VREHLLDRIAINLSAD 296 (653)
Q Consensus 225 ~giL~IDEi~~l~~------~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~--l~~aLldRf~~~v~l~ 296 (653)
.-|+|||++|.-.. ...+.|.+.++.|-. +.+.......=.++.+||+|||..|. +++-|++.|.+. .++
T Consensus 101 ~lv~fiDDlN~p~~d~ygtq~~iElLRQ~i~~~g~-yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f~i~-~~~ 178 (272)
T PF12775_consen 101 KLVLFIDDLNMPQPDKYGTQPPIELLRQLIDYGGF-YDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHFNIL-NIP 178 (272)
T ss_dssp EEEEEEETTT-S---TTS--HHHHHHHHHHHCSEE-ECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTEEEE-E--
T ss_pred EEEEEecccCCCCCCCCCCcCHHHHHHHHHHhcCc-ccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhheEEE-Eec
Confidence 45999999997643 356888888887753 44444454444578899999996654 788888888877 777
Q ss_pred CCCCHhhHHHHHH
Q 006254 297 LPMTFEDRVAAVG 309 (653)
Q Consensus 297 ~p~~~~~r~~I~~ 309 (653)
.| +.+....|..
T Consensus 179 ~p-~~~sl~~If~ 190 (272)
T PF12775_consen 179 YP-SDESLNTIFS 190 (272)
T ss_dssp ---TCCHHHHHHH
T ss_pred CC-ChHHHHHHHH
Confidence 44 6666666654
No 268
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.
Probab=98.43 E-value=1.8e-06 Score=84.15 Aligned_cols=86 Identities=14% Similarity=0.169 Sum_probs=70.3
Q ss_pred eEEEEEeCCCCCChhHHHHHHHHHHHHHHhHcC--CCCeEEEEEeecCCcEEEcCCCc--CHHHHHHHHhcCC-CCCCCc
Q 006254 563 LVIFVVDASGSMALNRMQNAKGAALKLLAESYT--CRDQVSIIPFRGDSAEVLLPPSR--SIAMARKRLERLP-CGGGSP 637 (653)
Q Consensus 563 ~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~ay~--~rd~v~li~F~~~~a~~~lp~t~--~~~~~~~~L~~l~-~gG~Tp 637 (653)
.++||+|.|+||+...+..+|..+..++..... ...+||||.|++ .+.+..|++. +...+.+.+..++ .+|+|.
T Consensus 2 Di~fvlD~S~S~~~~~f~~~k~fi~~~i~~l~~~~~~~rvgvv~fs~-~~~~~~~l~~~~~~~~~~~~i~~~~~~~g~T~ 80 (177)
T cd01469 2 DIVFVLDGSGSIYPDDFQKVKNFLSTVMKKLDIGPTKTQFGLVQYSE-SFRTEFTLNEYRTKEEPLSLVKHISQLLGLTN 80 (177)
T ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHHHHHHcCcCCCCcEEEEEEECC-ceeEEEecCccCCHHHHHHHHHhCccCCCCcc
Confidence 689999999999987888999999999865443 468999999965 5777778774 5556667777774 678899
Q ss_pred hHHHHHHHHHHH
Q 006254 638 LAHGLSMGWAKC 649 (653)
Q Consensus 638 l~~gl~~a~~~l 649 (653)
++.||..|.+.+
T Consensus 81 ~~~AL~~a~~~l 92 (177)
T cd01469 81 TATAIQYVVTEL 92 (177)
T ss_pred HHHHHHHHHHHh
Confidence 999999999876
No 269
>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma. Mutant forms are involved in the aetiology of bleeding disorders []. In von Willebrand factor, the type A domain (vWF) is the prototype for a protein superfamily. The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]. Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. Fold recognition algorithms were used to score sequence compatibility with a library of known structures: the vWF domain fold was predicted to be a doubly-wound, open, twisted beta-sheet flanked by alpha-helices []. 3D structures have been determined for the I-domains of integrins CD11b (with bound magnesium) [] and CD11a (with bound manganese) []. The domain adopts a classic alpha/beta Rossmann fold and contains an unusual metal ion coordination site at its surface. It has been suggested that this site represents a general metal ion-dependent adhesion site (MIDAS) for binding protein ligands []. The residues constituting the MIDAS motif in the CD11b and CD11a I-domains are completely conserved, but the manner in which the metal ion is coordinated differs slightly [].; GO: 0005515 protein binding; PDB: 2XGG_B 3ZQK_B 3GXB_A 3PPV_A 3PPX_A 3PPW_A 3PPY_A 1CQP_B 3TCX_B 2ICA_A ....
Probab=98.42 E-value=1.4e-06 Score=83.83 Aligned_cols=88 Identities=26% Similarity=0.394 Sum_probs=71.1
Q ss_pred eEEEEEeCCCCCChhHHHHHHHHHHHHHHhH--cCCCCeEEEEEeecCCcEEEcCCCc--CHHHHHHHH-hcC-CCCCCC
Q 006254 563 LVIFVVDASGSMALNRMQNAKGAALKLLAES--YTCRDQVSIIPFRGDSAEVLLPPSR--SIAMARKRL-ERL-PCGGGS 636 (653)
Q Consensus 563 ~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~a--y~~rd~v~li~F~~~~a~~~lp~t~--~~~~~~~~L-~~l-~~gG~T 636 (653)
+|+||||.|+||+..++..+|.++..++... ...+.+|++|.|+ +...++++++. +...+...+ ..+ ..+|+|
T Consensus 1 DivflvD~S~sm~~~~~~~~~~~v~~~i~~~~~~~~~~rv~iv~f~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~t 79 (178)
T PF00092_consen 1 DIVFLVDTSGSMSGDNFEKAKQFVKSIISRLSISNNGTRVGIVTFS-DSARVLFSLTDYQSKNDLLNAINDSIPSSGGGT 79 (178)
T ss_dssp EEEEEEE-STTSCHHHHHHHHHHHHHHHHHSTBSTTSEEEEEEEES-SSEEEEEETTSHSSHHHHHHHHHTTGGCCBSSB
T ss_pred CEEEEEeCCCCCchHHHHHHHHHHHHHHHhhhccccccccceeeee-cccccccccccccccccccccccccccccchhh
Confidence 5899999999999888899999999999744 6899999999996 55777777765 466677666 444 578999
Q ss_pred chHHHHHHHHHHHhh
Q 006254 637 PLAHGLSMGWAKCGE 651 (653)
Q Consensus 637 pl~~gl~~a~~~l~~ 651 (653)
.++.||..|.+.+..
T Consensus 80 ~~~~aL~~a~~~l~~ 94 (178)
T PF00092_consen 80 NLGAALKFAREQLFS 94 (178)
T ss_dssp -HHHHHHHHHHHTTS
T ss_pred hHHHHHhhhhhcccc
Confidence 999999999998764
No 270
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.40 E-value=1.1e-06 Score=91.05 Aligned_cols=156 Identities=15% Similarity=0.059 Sum_probs=99.7
Q ss_pred cccccCCCCCCCCceechHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccc
Q 006254 83 DQDSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWE 162 (653)
Q Consensus 83 ~~~~~~~~~~~f~~IvGq~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~ 162 (653)
.....+.++-.+.+++++++++..+..-.-.++..+.|++||||||||+...+.+..+. |++
T Consensus 29 ~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~~lPh~L~YgPPGtGktsti~a~a~~ly-----------~~~------- 90 (360)
T KOG0990|consen 29 QPWVEKYRPPFLGIVIKQEPIWSTENRYSGMPGLPHLLFYGPPGTGKTSTILANARDFY-----------SPH------- 90 (360)
T ss_pred CCCccCCCCchhhhHhcCCchhhHHHHhccCCCCCcccccCCCCCCCCCchhhhhhhhc-----------CCC-------
Confidence 33555677778899999999998885444445677999999999999999999999885 100
Q ss_pred ccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCcccccccccc-ccCceEEecccccCCHHHH
Q 006254 163 DGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAE-AHRGVLYIDEINLLDEGIS 241 (653)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~-A~~giL~IDEi~~l~~~~~ 241 (653)
+.....+-.++++++-.+.+--.--.|.- ...+-+++. +.--.+++||.+.+....|
T Consensus 91 --------------------~~~~m~lelnaSd~rgid~vr~qi~~fas--t~~~~~fst~~~fKlvILDEADaMT~~AQ 148 (360)
T KOG0990|consen 91 --------------------PTTSMLLELNASDDRGIDPVRQQIHLFAS--TQQPTTYSTHAAFKLVILDEADAMTRDAQ 148 (360)
T ss_pred --------------------CchhHHHHhhccCccCCcchHHHHHHHHh--hccceeccccCceeEEEecchhHhhHHHH
Confidence 11111123334444433322100000000 011122322 2234889999999999999
Q ss_pred HHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhccc
Q 006254 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAIN 292 (653)
Q Consensus 242 ~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~ 292 (653)
++|-++++... .+++++--+| -...+.++++.||..+
T Consensus 149 nALRRviek~t-------------~n~rF~ii~n-~~~ki~pa~qsRctrf 185 (360)
T KOG0990|consen 149 NALRRVIEKYT-------------ANTRFATISN-PPQKIHPAQQSRCTRF 185 (360)
T ss_pred HHHHHHHHHhc-------------cceEEEEecc-ChhhcCchhhcccccC
Confidence 99999887654 2445554555 5667789999998766
No 271
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.40 E-value=3.4e-06 Score=90.20 Aligned_cols=164 Identities=15% Similarity=0.104 Sum_probs=92.2
Q ss_pred hHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCC-CCCCCccccccccccccccccccc
Q 006254 100 QDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANAD-PTCPDEWEDGLDEKAEYDTAGNLK 178 (653)
Q Consensus 100 q~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~-p~~~~~~~~~~~~~~~~~~~~~~~ 178 (653)
++...+.+... .....+.+||+||+|+|||++|+.+++.+ +|. |......|..|.........
T Consensus 6 ~~~~w~~l~~~-~~r~~hA~Lf~G~~G~GK~~la~~~a~~l-----------lC~~~~~~~~~Cg~C~~C~~~~~~---- 69 (325)
T PRK08699 6 HQEQWRQIAEH-WERRPNAWLFAGKKGIGKTAFARFAAQAL-----------LCETPAPGHKPCGECMSCHLFGQG---- 69 (325)
T ss_pred cHHHHHHHHHh-cCCcceEEEeECCCCCCHHHHHHHHHHHH-----------cCCCCCCCCCCCCcCHHHHHHhcC----
Confidence 44555555433 22234459999999999999999999987 453 22222345555442211111
Q ss_pred ccccCCCeEeCCCCCc-c--c---ceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHHHHHHcCc
Q 006254 179 TQIARSPFVQIPLGVT-E--D---RLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGV 252 (653)
Q Consensus 179 ~~~~~~~fv~l~~~~~-~--~---~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~l~~g~ 252 (653)
....|+.+..... + . .-++.-++ +.+.... ...| ..+...|++||+++.|+...++.|+..+++..
T Consensus 70 ---~HpD~~~~~p~~~~~~~g~~~~~I~id~i-R~l~~~~-~~~p---~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~ 141 (325)
T PRK08699 70 ---SHPDFYEITPLSDEPENGRKLLQIKIDAV-REIIDNV-YLTS---VRGGLRVILIHPAESMNLQAANSLLKVLEEPP 141 (325)
T ss_pred ---CCCCEEEEecccccccccccCCCcCHHHH-HHHHHHH-hhCc---ccCCceEEEEechhhCCHHHHHHHHHHHHhCc
Confidence 1233555543211 0 0 01111111 1111000 0011 11235699999999999999999999999753
Q ss_pred eEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhh
Q 006254 253 NIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFED 303 (653)
Q Consensus 253 ~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~ 303 (653)
....+|.+|+ ....+.+.+.+|+..+ .+. |++.++
T Consensus 142 -------------~~~~~Ilvth-~~~~ll~ti~SRc~~~-~~~-~~~~~~ 176 (325)
T PRK08699 142 -------------PQVVFLLVSH-AADKVLPTIKSRCRKM-VLP-APSHEE 176 (325)
T ss_pred -------------CCCEEEEEeC-ChHhChHHHHHHhhhh-cCC-CCCHHH
Confidence 1234555555 5557888999998766 676 445554
No 272
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=98.37 E-value=2.1e-06 Score=96.18 Aligned_cols=91 Identities=14% Similarity=0.158 Sum_probs=71.7
Q ss_pred CCceEEEEEeCCCCCCh-hHHHHHHHHHHHHHHhHcCCCCeEEE--EEeecCCcEEEcCCCcCH----HHHHHHHh----
Q 006254 560 AGALVIFVVDASGSMAL-NRMQNAKGAALKLLAESYTCRDQVSI--IPFRGDSAEVLLPPSRSI----AMARKRLE---- 628 (653)
Q Consensus 560 ~~~~v~~vvD~SgSM~~-~r~~~ak~a~~~ll~~ay~~rd~v~l--i~F~~~~a~~~lp~t~~~----~~~~~~L~---- 628 (653)
....++||||.|+||+. +++..+|.++..|+.......|++.| |.|+ +.+.+++|++... ..+...|.
T Consensus 41 ~~lDIvFLLD~SgSMg~~Nfle~AK~Fa~~LV~~l~Is~D~V~VgiV~FS-d~~r~vfpL~s~~s~Dk~~aL~~I~sL~~ 119 (576)
T PTZ00441 41 EEVDLYLLVDGSGSIGYHNWITHVIPMLMGLIQQLNLSDDAINLYMSLFS-NNTTELIRLGSGASKDKEQALIIVKSLRK 119 (576)
T ss_pred CCceEEEEEeCCCccCCccHHHHHHHHHHHHHHHhccCCCceEEEEEEeC-CCceEEEecCCCccccHHHHHHHHHHHHh
Confidence 47899999999999975 78889999999999887777777655 8996 5588888886532 34444443
Q ss_pred cCCCCCCCchHHHHHHHHHHHhh
Q 006254 629 RLPCGGGSPLAHGLSMGWAKCGE 651 (653)
Q Consensus 629 ~l~~gG~Tpl~~gl~~a~~~l~~ 651 (653)
.+.++|+|.++.||..+++++.+
T Consensus 120 ~~~pgGgTnig~AL~~Aae~L~s 142 (576)
T PTZ00441 120 TYLPYGKTNMTDALLEVRKHLND 142 (576)
T ss_pred hccCCCCccHHHHHHHHHHHHhh
Confidence 45679999999999999988864
No 273
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.35 E-value=4.6e-06 Score=88.76 Aligned_cols=165 Identities=16% Similarity=0.131 Sum_probs=91.2
Q ss_pred chHHHHHHHHHhcccCCCc-eEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccccccccccc
Q 006254 99 GQDAIKTALLLGAIDREIG-GIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNL 177 (653)
Q Consensus 99 Gq~~~k~aL~~~av~p~~~-gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~~~~~~~ 177 (653)
-+..+++.|.-+.-..... .+||.||+|+||+++|.+++..+- |...+...-|..|.-... +
T Consensus 8 W~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~Ll-----------C~~~~~~~~c~~c~~~~~----g-- 70 (319)
T PRK08769 8 WQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVL-----------ASGPDPAAAQRTRQLIAA----G-- 70 (319)
T ss_pred cHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHh-----------CCCCCCCCcchHHHHHhc----C--
Confidence 4556677765543333334 499999999999999999999873 322111112333321110 0
Q ss_pred cccccCCCeEeC--CCCCccc---ceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHHHHHHcCc
Q 006254 178 KTQIARSPFVQI--PLGVTED---RLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGV 252 (653)
Q Consensus 178 ~~~~~~~~fv~l--~~~~~~~---~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~l~~g~ 252 (653)
....|..+ .++-... .-++ +|--+.+..- ....| ..+..-|++||+++.|+...+|+||..|++-.
T Consensus 71 ----~HPD~~~i~~~p~~~~~k~~~~I~-idqIR~l~~~-~~~~p---~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp 141 (319)
T PRK08769 71 ----THPDLQLVSFIPNRTGDKLRTEIV-IEQVREISQK-LALTP---QYGIAQVVIVDPADAINRAACNALLKTLEEPS 141 (319)
T ss_pred ----CCCCEEEEecCCCccccccccccc-HHHHHHHHHH-HhhCc---ccCCcEEEEeccHhhhCHHHHHHHHHHhhCCC
Confidence 01123323 1111000 0111 1100111000 00000 01123599999999999999999999999753
Q ss_pred eEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHH
Q 006254 253 NIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRV 305 (653)
Q Consensus 253 ~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~ 305 (653)
.+.++|-+++ ....+.|.+++|+..+ .+. +++.++-.
T Consensus 142 -------------~~~~fiL~~~-~~~~lLpTIrSRCq~i-~~~-~~~~~~~~ 178 (319)
T PRK08769 142 -------------PGRYLWLISA-QPARLPATIRSRCQRL-EFK-LPPAHEAL 178 (319)
T ss_pred -------------CCCeEEEEEC-ChhhCchHHHhhheEe-eCC-CcCHHHHH
Confidence 3455666666 6677889999999877 676 34554433
No 274
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.30 E-value=2.1e-06 Score=87.32 Aligned_cols=141 Identities=21% Similarity=0.183 Sum_probs=84.3
Q ss_pred CceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeEeCCCCCcc
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTE 195 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~ 195 (653)
..+..++||.|||||.+++.++..++..- ..|||++.-.. ...
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~----~vfnc~~~~~~---------------------------------~~l 74 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFV----VVFNCSEQMDY---------------------------------QSL 74 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--E----EEEETTSSS-H---------------------------------HHH
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeE----EEecccccccH---------------------------------HHH
Confidence 35567899999999999999999997422 23566432100 000
Q ss_pred cceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHH-------HHHHHcCceEEeeCCeeEEeecCc
Q 006254 196 DRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLL-------LNVLTEGVNIVEREGISFKHPCKP 268 (653)
Q Consensus 196 ~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~L-------l~~l~~g~~~v~r~G~s~~~p~~~ 268 (653)
.+++- |+.. .|.++++||+|+|+.+++..+ .+++.++...+.-.|..+.....+
T Consensus 75 ~ril~-----------------G~~~--~GaW~cfdefnrl~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~ 135 (231)
T PF12774_consen 75 SRILK-----------------GLAQ--SGAWLCFDEFNRLSEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNC 135 (231)
T ss_dssp HHHHH-----------------HHHH--HT-EEEEETCCCSSHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-
T ss_pred HHHHH-----------------HHhh--cCchhhhhhhhhhhHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccce
Confidence 11111 2221 356899999999998776555 455566666777789988888889
Q ss_pred EEEEEecCCC---CcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHH
Q 006254 269 LLIATYNPEE---GVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQF 314 (653)
Q Consensus 269 ~lIattNp~e---g~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~ 314 (653)
.++.|+||.- .+|++.|..-|-.+ .+.. ||.....++.-....|
T Consensus 136 ~iFiT~np~y~gr~~LP~nLk~lFRpv-am~~-PD~~~I~ei~L~s~GF 182 (231)
T PF12774_consen 136 GIFITMNPGYAGRSELPENLKALFRPV-AMMV-PDLSLIAEILLLSQGF 182 (231)
T ss_dssp EEEEEE-B-CCCC--S-HHHCTTEEEE-E--S---HHHHHHHHHHCCCT
T ss_pred eEEEeeccccCCcccCCHhHHHHhhee-EEeC-CCHHHHHHHHHHHcCc
Confidence 9999999843 36888887777655 5553 4777666665544333
No 275
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.29 E-value=7.3e-06 Score=87.16 Aligned_cols=164 Identities=12% Similarity=0.058 Sum_probs=93.6
Q ss_pred hHHHHHHHHHhcccCC-CceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccccccccccccccccc
Q 006254 100 QDAIKTALLLGAIDRE-IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLK 178 (653)
Q Consensus 100 q~~~k~aL~~~av~p~-~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~~~~~~~~ 178 (653)
+...++.|..+.-... .+.+||.||.|+||+++|+.+++.+- |.-. .+..|..|..........
T Consensus 8 l~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~ll-----------C~~~-~~~~Cg~C~sC~~~~~g~--- 72 (319)
T PRK06090 8 LVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALL-----------CQNY-QSEACGFCHSCELMQSGN--- 72 (319)
T ss_pred HHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHc-----------CCCC-CCCCCCCCHHHHHHHcCC---
Confidence 4556666654333222 34599999999999999999999873 4321 123454444321111111
Q ss_pred ccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHHHHHHcCceEEeeC
Q 006254 179 TQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVERE 258 (653)
Q Consensus 179 ~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~l~~g~~~v~r~ 258 (653)
...|..+.... ..+-++.-++. .+..- ....+ ..+..-|++||++++|+...+|+||..+++-.
T Consensus 73 ----HPD~~~i~p~~-~~~~I~vdqiR-~l~~~-~~~~~---~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp------ 136 (319)
T PRK06090 73 ----HPDLHVIKPEK-EGKSITVEQIR-QCNRL-AQESS---QLNGYRLFVIEPADAMNESASNALLKTLEEPA------ 136 (319)
T ss_pred ----CCCEEEEecCc-CCCcCCHHHHH-HHHHH-HhhCc---ccCCceEEEecchhhhCHHHHHHHHHHhcCCC------
Confidence 12233332211 01112211111 11000 00000 11223599999999999999999999999753
Q ss_pred CeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhH
Q 006254 259 GISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDR 304 (653)
Q Consensus 259 G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r 304 (653)
.+.++|-.++ ....+.|-+++|+..+ .+. |++.+..
T Consensus 137 -------~~t~fiL~t~-~~~~lLpTI~SRCq~~-~~~-~~~~~~~ 172 (319)
T PRK06090 137 -------PNCLFLLVTH-NQKRLLPTIVSRCQQW-VVT-PPSTAQA 172 (319)
T ss_pred -------CCeEEEEEEC-ChhhChHHHHhcceeE-eCC-CCCHHHH
Confidence 3456666666 6778889999999876 776 4455543
No 276
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.26 E-value=8.6e-06 Score=87.43 Aligned_cols=164 Identities=13% Similarity=0.091 Sum_probs=92.7
Q ss_pred hHHHHHHHHHhccc-CCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccccccccccccccccc
Q 006254 100 QDAIKTALLLGAID-REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLK 178 (653)
Q Consensus 100 q~~~k~aL~~~av~-p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~~~~~~~~ 178 (653)
++...+.|.-+.-. ...+.+||.||+|+||+++|++++..+ .|.....+..|..|........ +
T Consensus 7 l~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~L-----------lC~~~~~~~~Cg~C~sC~~~~~-g--- 71 (334)
T PRK07993 7 LRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWL-----------MCQQPQGHKSCGHCRGCQLMQA-G--- 71 (334)
T ss_pred ChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHH-----------cCCCCCCCCCCCCCHHHHHHHc-C---
Confidence 44555666443332 234568999999999999999999987 4632222334555543211100 1
Q ss_pred ccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHHHHHHcCceEEeeC
Q 006254 179 TQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVERE 258 (653)
Q Consensus 179 ~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~l~~g~~~v~r~ 258 (653)
....|..+..... ...++.-++. .+.. .....| ..+..-|++||+++.|....+|+||..|++-.
T Consensus 72 ---~HPD~~~i~p~~~-~~~I~idqiR-~l~~-~~~~~~---~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp------ 136 (334)
T PRK07993 72 ---THPDYYTLTPEKG-KSSLGVDAVR-EVTE-KLYEHA---RLGGAKVVWLPDAALLTDAAANALLKTLEEPP------ 136 (334)
T ss_pred ---CCCCEEEEecccc-cccCCHHHHH-HHHH-HHhhcc---ccCCceEEEEcchHhhCHHHHHHHHHHhcCCC------
Confidence 0122333321110 0112211111 1100 000111 12234599999999999999999999999753
Q ss_pred CeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhh
Q 006254 259 GISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFED 303 (653)
Q Consensus 259 G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~ 303 (653)
.+.++|-+++ ....|.+-+++|+..+ .+. |+..+.
T Consensus 137 -------~~t~fiL~t~-~~~~lLpTIrSRCq~~-~~~-~~~~~~ 171 (334)
T PRK07993 137 -------ENTWFFLACR-EPARLLATLRSRCRLH-YLA-PPPEQY 171 (334)
T ss_pred -------CCeEEEEEEC-ChhhChHHHHhccccc-cCC-CCCHHH
Confidence 3445555555 6778889999999865 776 444443
No 277
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.24 E-value=6.9e-06 Score=92.92 Aligned_cols=199 Identities=16% Similarity=0.169 Sum_probs=117.2
Q ss_pred CCCCCCCCceechHHHHHHHHH-------hcc-----------------------cCCC----ceEEEECCCCCHHHHHH
Q 006254 88 GRQFFPLAAVVGQDAIKTALLL-------GAI-----------------------DREI----GGIAISGRRGTAKTVMA 133 (653)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~~-------~av-----------------------~p~~----~gVLL~GppGTGKT~lA 133 (653)
+.++..|.+++|.+..-++++. ++. +|.. .-+||+||||-||||||
T Consensus 264 ky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLA 343 (877)
T KOG1969|consen 264 KYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLA 343 (877)
T ss_pred ccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhHHH
Confidence 4567789999999987776631 111 1111 11999999999999999
Q ss_pred HHHHhhCCCCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeEeCCCCCcccceeeec--chhhhhccC
Q 006254 134 RGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSV--DVEESVKTG 211 (653)
Q Consensus 134 rala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~--d~~~~~~~g 211 (653)
+.||...+ ..++++. +++++-.-.+ -++.+++.
T Consensus 344 HViAkqaG------------------------------------------YsVvEIN--ASDeRt~~~v~~kI~~avq~- 378 (877)
T KOG1969|consen 344 HVIAKQAG------------------------------------------YSVVEIN--ASDERTAPMVKEKIENAVQN- 378 (877)
T ss_pred HHHHHhcC------------------------------------------ceEEEec--ccccccHHHHHHHHHHHHhh-
Confidence 99999764 2333332 3333322211 11111111
Q ss_pred Ccccccccc-ccccCceEEecccccCCHHHHHHHHHHHHcCc-eEEe-eCCee----------EEeecCcEEEEEecCCC
Q 006254 212 TTVFQPGLL-AEAHRGVLYIDEINLLDEGISNLLLNVLTEGV-NIVE-REGIS----------FKHPCKPLLIATYNPEE 278 (653)
Q Consensus 212 ~~~~~~Gll-~~A~~giL~IDEi~~l~~~~~~~Ll~~l~~g~-~~v~-r~G~s----------~~~p~~~~lIattNp~e 278 (653)
...+ +...+..|+||||+-.+...++.|+..+.... -.+. ..+.. ...| ||+.|| +-
T Consensus 379 -----~s~l~adsrP~CLViDEIDGa~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RP----IICICN-dL 448 (877)
T KOG1969|consen 379 -----HSVLDADSRPVCLVIDEIDGAPRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRP----IICICN-DL 448 (877)
T ss_pred -----ccccccCCCcceEEEecccCCcHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCC----EEEEec-Cc
Confidence 1122 22345689999999999999999999987322 1111 11111 1122 788888 32
Q ss_pred CcccHHHHh--hhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHH
Q 006254 279 GVVREHLLD--RIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYL 356 (653)
Q Consensus 279 g~l~~aLld--Rf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l 356 (653)
.-|+|.. =|..++.+. |+.....++-++.+ ....+..++..++..|
T Consensus 449 --YaPaLR~Lr~~A~ii~f~-~p~~s~Lv~RL~~I-----------------------------C~rE~mr~d~~aL~~L 496 (877)
T KOG1969|consen 449 --YAPALRPLRPFAEIIAFV-PPSQSRLVERLNEI-----------------------------CHRENMRADSKALNAL 496 (877)
T ss_pred --cchhhhhcccceEEEEec-CCChhHHHHHHHHH-----------------------------HhhhcCCCCHHHHHHH
Confidence 2355543 467776776 44555433222211 1123567888999999
Q ss_pred HHHHHhcCCCCcchHHHHHHH
Q 006254 357 VMEALRGGCQGHRAELYAARV 377 (653)
Q Consensus 357 ~~~~~~~~i~s~R~~i~llr~ 377 (653)
+++|... .|..|+.++-
T Consensus 497 ~el~~~D----IRsCINtLQf 513 (877)
T KOG1969|consen 497 CELTQND----IRSCINTLQF 513 (877)
T ss_pred HHHhcch----HHHHHHHHHH
Confidence 9998653 7888888754
No 278
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=98.23 E-value=6.7e-06 Score=81.42 Aligned_cols=87 Identities=17% Similarity=0.254 Sum_probs=63.5
Q ss_pred eEEEEEeCCCCCChh-HHHHHHHHHHHHHHhH--cCCCCeEEEEEeecCCcEEEcCCCc----CHHHHHHHHhcCC----
Q 006254 563 LVIFVVDASGSMALN-RMQNAKGAALKLLAES--YTCRDQVSIIPFRGDSAEVLLPPSR----SIAMARKRLERLP---- 631 (653)
Q Consensus 563 ~v~~vvD~SgSM~~~-r~~~ak~a~~~ll~~a--y~~rd~v~li~F~~~~a~~~lp~t~----~~~~~~~~L~~l~---- 631 (653)
.++||||.|+||+.. ....++..+..++... ...+.+||||.|+ +.+.+.+|++. +...+...|..+.
T Consensus 2 Di~fllD~S~Si~~~~f~~~~~~f~~~lv~~l~i~~~~~rvgvv~fs-~~~~~~~~~~~~~~~~~~~l~~~i~~l~~~~~ 80 (192)
T cd01473 2 DLTLILDESASIGYSNWRKDVIPFTEKIINNLNISKDKVHVGILLFA-EKNRDVVPFSDEERYDKNELLKKINDLKNSYR 80 (192)
T ss_pred cEEEEEeCCCcccHHHHHHHHHHHHHHHHHhCccCCCccEEEEEEec-CCceeEEecCcccccCHHHHHHHHHHHHhccC
Confidence 589999999999863 3223455555555432 3567999999997 45788888774 4556666666553
Q ss_pred CCCCCchHHHHHHHHHHHh
Q 006254 632 CGGGSPLAHGLSMGWAKCG 650 (653)
Q Consensus 632 ~gG~Tpl~~gl~~a~~~l~ 650 (653)
.||+|.++.||..|.+.+.
T Consensus 81 ~~g~T~~~~AL~~a~~~~~ 99 (192)
T cd01473 81 SGGETYIVEALKYGLKNYT 99 (192)
T ss_pred CCCcCcHHHHHHHHHHHhc
Confidence 5899999999999988764
No 279
>PRK08116 hypothetical protein; Validated
Probab=98.22 E-value=2.3e-06 Score=89.09 Aligned_cols=54 Identities=19% Similarity=0.198 Sum_probs=38.8
Q ss_pred cCceEEeccc--ccCCHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCc----ccHHHHhhh
Q 006254 224 HRGVLYIDEI--NLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGV----VREHLLDRI 289 (653)
Q Consensus 224 ~~giL~IDEi--~~l~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~----l~~aLldRf 289 (653)
+..+|+|||+ +...+..+..|+.+++.... . ...+|.|||..+.+ +...+++|+
T Consensus 178 ~~dlLviDDlg~e~~t~~~~~~l~~iin~r~~----~--------~~~~IiTsN~~~~eL~~~~~~ri~sRl 237 (268)
T PRK08116 178 NADLLILDDLGAERDTEWAREKVYNIIDSRYR----K--------GLPTIVTTNLSLEELKNQYGKRIYDRI 237 (268)
T ss_pred CCCEEEEecccCCCCCHHHHHHHHHHHHHHHH----C--------CCCEEEECCCCHHHHHHHHhHHHHHHH
Confidence 3469999999 55678888999999886531 1 22478888865544 456888996
No 280
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.20 E-value=2.2e-05 Score=79.94 Aligned_cols=219 Identities=15% Similarity=0.119 Sum_probs=127.2
Q ss_pred CCCCCCCCceechHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccc
Q 006254 88 GRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDE 167 (653)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~ 167 (653)
+.++..|+.+.++++....|+-........|+|++||+|+||-|.+-+|-+.+....+..--+ +...|
T Consensus 6 kyrpksl~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki------~~~t~------ 73 (351)
T KOG2035|consen 6 KYRPKSLDELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKI------ETRTF------ 73 (351)
T ss_pred hcCcchhhhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheee------eeEEE------
Confidence 356777888999998888776544433468899999999999999999888875321100000 00000
Q ss_pred ccccccccc---ccccccCCCeEeCCCCCcccceeeecc------hhhhhccCCccccccccccccCceEEecccccCCH
Q 006254 168 KAEYDTAGN---LKTQIARSPFVQIPLGVTEDRLIGSVD------VEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDE 238 (653)
Q Consensus 168 ~~~~~~~~~---~~~~~~~~~fv~l~~~~~~~~l~G~~d------~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~ 238 (653)
.+..+. +.+.. ..-.+++.++- .|..| +-+.+.........|. -.--+++|.|+|.|..
T Consensus 74 ---~tpS~kklEistvs-S~yHlEitPSD-----aG~~DRvViQellKevAQt~qie~~~q---r~fKvvvi~ead~LT~ 141 (351)
T KOG2035|consen 74 ---TTPSKKKLEISTVS-SNYHLEITPSD-----AGNYDRVVIQELLKEVAQTQQIETQGQ---RPFKVVVINEADELTR 141 (351)
T ss_pred ---ecCCCceEEEEEec-ccceEEeChhh-----cCcccHHHHHHHHHHHHhhcchhhccc---cceEEEEEechHhhhH
Confidence 001110 11111 11122222221 23222 1111111111110000 0123899999999999
Q ss_pred HHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhh
Q 006254 239 GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERS 318 (653)
Q Consensus 239 ~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~ 318 (653)
+.|.+|.+.|+.-. .++++|..+| .-..+-+++.+|+-.+ .++.| +.++...++..+..-
T Consensus 142 dAQ~aLRRTMEkYs-------------~~~RlIl~cn-s~SriIepIrSRCl~i-Rvpap-s~eeI~~vl~~v~~k---- 201 (351)
T KOG2035|consen 142 DAQHALRRTMEKYS-------------SNCRLILVCN-STSRIIEPIRSRCLFI-RVPAP-SDEEITSVLSKVLKK---- 201 (351)
T ss_pred HHHHHHHHHHHHHh-------------cCceEEEEec-CcccchhHHhhheeEE-eCCCC-CHHHHHHHHHHHHHH----
Confidence 99999999999654 2567888888 6777889999997444 77766 555555554432111
Q ss_pred hHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 006254 319 NEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAK 379 (653)
Q Consensus 319 ~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ar 379 (653)
....++.+.+..+++-+ +. ++|.++-++++++
T Consensus 202 -------------------------E~l~lp~~~l~rIa~kS---~~-nLRrAllmlE~~~ 233 (351)
T KOG2035|consen 202 -------------------------EGLQLPKELLKRIAEKS---NR-NLRRALLMLEAVR 233 (351)
T ss_pred -------------------------hcccCcHHHHHHHHHHh---cc-cHHHHHHHHHHHH
Confidence 23568888777775544 33 5888888876654
No 281
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=98.19 E-value=7.2e-06 Score=84.78 Aligned_cols=87 Identities=14% Similarity=0.119 Sum_probs=68.7
Q ss_pred CCceEEEEEeCCCCCCh-----hHHHHHHHHHHHHHHhHcCCCCeEEEEEeecCCcEEEcCCCcCHHHHHHHH---hc-C
Q 006254 560 AGALVIFVVDASGSMAL-----NRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRL---ER-L 630 (653)
Q Consensus 560 ~~~~v~~vvD~SgSM~~-----~r~~~ak~a~~~ll~~ay~~rd~v~li~F~~~~a~~~lp~t~~~~~~~~~L---~~-l 630 (653)
.+..|+|+||.|.||.. .+++ +|..+..++. ....|+|||+.|++ .+.+++|.|.+... +..+ +. .
T Consensus 59 r~~qIvlaID~S~SM~~~~~~~~ale-ak~lIs~al~--~Le~g~vgVv~Fg~-~~~~v~Plt~d~~~-~a~~~~l~~~~ 133 (266)
T cd01460 59 RDYQILIAIDDSKSMSENNSKKLALE-SLCLVSKALT--LLEVGQLGVCSFGE-DVQILHPFDEQFSS-QSGPRILNQFT 133 (266)
T ss_pred cCceEEEEEecchhcccccccccHHH-HHHHHHHHHH--hCcCCcEEEEEeCC-CceEeCCCCCCchh-hHHHHHhCccc
Confidence 38899999999999954 4666 6777777764 36779999999965 58899999998876 4444 33 2
Q ss_pred CCCCCCchHHHHHHHHHHHhh
Q 006254 631 PCGGGSPLAHGLSMGWAKCGE 651 (653)
Q Consensus 631 ~~gG~Tpl~~gl~~a~~~l~~ 651 (653)
...++|+++.+|..|.+++.+
T Consensus 134 f~~~~Tni~~aL~~a~~~f~~ 154 (266)
T cd01460 134 FQQDKTDIANLLKFTAQIFED 154 (266)
T ss_pred CCCCCCcHHHHHHHHHHHHHh
Confidence 345899999999999998864
No 282
>COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]
Probab=98.18 E-value=6.2e-06 Score=91.33 Aligned_cols=107 Identities=25% Similarity=0.383 Sum_probs=88.0
Q ss_pred cccCCCCCCCCCcChhHhHHhhCCcchhhhccccccccceeeecCcchhhhhhccCCceEEEEEeCCCCCCh-----hHH
Q 006254 505 IKPMLPKGPIKRLAVDATLRAAAPYQKLRRERDTQKTRKVFVEKTDMRAKRMARKAGALVIFVVDASGSMAL-----NRM 579 (653)
Q Consensus 505 ~~~~~~~~~~~~i~~~aTl~~aap~q~~r~~~~~~~~~~~~i~~~dl~~~~~~~~~~~~v~~vvD~SgSM~~-----~r~ 579 (653)
+|...|+++.+.|||.+|-|. ++|++|.++.....+|++++|+|.||.. ++.
T Consensus 191 lReY~pGD~~r~IdWkasAR~-----------------------g~l~vrefe~er~~~v~l~lD~~~~m~~~~~~~~~~ 247 (416)
T COG1721 191 LREYQPGDDLRRIDWKASART-----------------------GKLLVREFEEERGRTVVLVLDASRSMLFGSGVASKF 247 (416)
T ss_pred hcCCCCCCcccccchhhhccc-----------------------CCceeehhhhhcCceEEEEEeCCccccCCCCCccHH
Confidence 688888888899999999875 3789999999999999999999999963 799
Q ss_pred HHHHHHHHHHHHhHcCCCCeEEEEEeecCCcEEEcCCCcCHHHHH---HHHhcCCCCCC
Q 006254 580 QNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMAR---KRLERLPCGGG 635 (653)
Q Consensus 580 ~~ak~a~~~ll~~ay~~rd~v~li~F~~~~a~~~lp~t~~~~~~~---~~L~~l~~gG~ 635 (653)
+.+-.++.+|...++.++|+||++.|++. ....+||.+...... +.|..++..+.
T Consensus 248 e~av~~a~~la~~~l~~gd~vg~~~~~~~-~~~~~~p~~G~~~l~~~l~~l~~~~~~~~ 305 (416)
T COG1721 248 EEAVRAAASLAYAALKNGDRVGLLIFGGG-GPKWIPPSRGRRHLARILKALALLRPAPE 305 (416)
T ss_pred HHHHHHHHHHHHHHHhCCCeeEEEEECCC-cceeeCCCcchHHHHHHHHHhhccCCCCc
Confidence 99999999999999999999999999643 456678877555555 45555555444
No 283
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.16 E-value=2.6e-05 Score=81.42 Aligned_cols=230 Identities=20% Similarity=0.158 Sum_probs=126.7
Q ss_pred CceechHHHHHHH--HHh-cccC---CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccccccc
Q 006254 95 AAVVGQDAIKTAL--LLG-AIDR---EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (653)
Q Consensus 95 ~~IvGq~~~k~aL--~~~-av~p---~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~ 168 (653)
+.-||...++++| +.. +..| ...++||+|++|.|||++++.+...-|+. .|++
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~---------~d~~------------ 92 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQ---------SDED------------ 92 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCC---------CCCC------------
Confidence 3578888888888 222 2344 34569999999999999999999977631 1110
Q ss_pred ccccccccccccccCCC--eEeCCCCCcccceeeecchhhhhccCC----c----c-ccccccccccCceEEecccccC-
Q 006254 169 AEYDTAGNLKTQIARSP--FVQIPLGVTEDRLIGSVDVEESVKTGT----T----V-FQPGLLAEAHRGVLYIDEINLL- 236 (653)
Q Consensus 169 ~~~~~~~~~~~~~~~~~--fv~l~~~~~~~~l~G~~d~~~~~~~g~----~----~-~~~Gll~~A~~giL~IDEi~~l- 236 (653)
....| ++..|.+.++.++...+= ..+..-. . . ..-.+|..-+--+|+||||+.+
T Consensus 93 ------------~~~~PVv~vq~P~~p~~~~~Y~~IL--~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lL 158 (302)
T PF05621_consen 93 ------------AERIPVVYVQMPPEPDERRFYSAIL--EALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLL 158 (302)
T ss_pred ------------CccccEEEEecCCCCChHHHHHHHH--HHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHh
Confidence 01234 455677777777766531 1111110 0 0 0113444445569999999986
Q ss_pred --CHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCC-CCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHH
Q 006254 237 --DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE-EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQ 313 (653)
Q Consensus 237 --~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~-eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~ 313 (653)
+..-|..++.++..--+ .....++.+||..-. --.-+++|-+||..+ .++.....++ -..+...
T Consensus 159 aGs~~~qr~~Ln~LK~L~N---------eL~ipiV~vGt~~A~~al~~D~QLa~RF~~~-~Lp~W~~d~e---f~~LL~s 225 (302)
T PF05621_consen 159 AGSYRKQREFLNALKFLGN---------ELQIPIVGVGTREAYRALRTDPQLASRFEPF-ELPRWELDEE---FRRLLAS 225 (302)
T ss_pred cccHHHHHHHHHHHHHHhh---------ccCCCeEEeccHHHHHHhccCHHHHhccCCc-cCCCCCCCcH---HHHHHHH
Confidence 23334444444432111 112235666663211 123468999999887 6652211111 1111122
Q ss_pred HHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccH
Q 006254 314 FQERSNEVFKMVEEETDLAKTQIILAREYLKDVAI-GREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNV 392 (653)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~i-s~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~ 392 (653)
|+ ..--....-.+ +.+...+|.+.+ .|..| ....++..|...|--.|++.||.
T Consensus 226 ~e----------------------~~LPLr~~S~l~~~~la~~i~~~s--~G~iG--~l~~ll~~aA~~AI~sG~E~It~ 279 (302)
T PF05621_consen 226 FE----------------------RALPLRKPSNLASPELARRIHERS--EGLIG--ELSRLLNAAAIAAIRSGEERITR 279 (302)
T ss_pred HH----------------------HhCCCCCCCCCCCHHHHHHHHHHc--CCchH--HHHHHHHHHHHHHHhcCCceecH
Confidence 21 11111111123 334445665544 33332 55678888888888999999999
Q ss_pred HHHHHH
Q 006254 393 DDLKKA 398 (653)
Q Consensus 393 eDv~~A 398 (653)
+.+...
T Consensus 280 ~~l~~~ 285 (302)
T PF05621_consen 280 EILDKI 285 (302)
T ss_pred HHHhhC
Confidence 999764
No 284
>PRK12377 putative replication protein; Provisional
Probab=98.15 E-value=2.4e-06 Score=87.73 Aligned_cols=117 Identities=17% Similarity=0.244 Sum_probs=68.6
Q ss_pred CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeEeCCCCCc
Q 006254 115 EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVT 194 (653)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~ 194 (653)
...+++|+|+||||||+||.+|++.+.. ....++.++..
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~---------------------------------------~g~~v~~i~~~-- 138 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLA---------------------------------------KGRSVIVVTVP-- 138 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHH---------------------------------------cCCCeEEEEHH--
Confidence 3468999999999999999999998741 01222222211
Q ss_pred ccceeeecchhhhhccCCccccccccc-cccCceEEeccc--ccCCHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEE
Q 006254 195 EDRLIGSVDVEESVKTGTTVFQPGLLA-EAHRGVLYIDEI--NLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLI 271 (653)
Q Consensus 195 ~~~l~G~~d~~~~~~~g~~~~~~Gll~-~A~~giL~IDEi--~~l~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lI 271 (653)
.++..+ ..+...+.. ...++. ..+-.+|+|||+ ...+...++.|+.+++..... .--+|
T Consensus 139 --~l~~~l--~~~~~~~~~--~~~~l~~l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~------------~~pti 200 (248)
T PRK12377 139 --DVMSRL--HESYDNGQS--GEKFLQELCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTAS------------MRSVG 200 (248)
T ss_pred --HHHHHH--HHHHhccch--HHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhc------------CCCEE
Confidence 122211 111111110 001111 123469999999 556778889999999876411 12367
Q ss_pred EEecCCCC----cccHHHHhhhc
Q 006254 272 ATYNPEEG----VVREHLLDRIA 290 (653)
Q Consensus 272 attNp~eg----~l~~aLldRf~ 290 (653)
.|||.... .+...++||+-
T Consensus 201 itSNl~~~~l~~~~~~ri~dRl~ 223 (248)
T PRK12377 201 MLTNLNHEAMSTLLGERVMDRMT 223 (248)
T ss_pred EEcCCCHHHHHHHhhHHHHHHHh
Confidence 78896443 35567888884
No 285
>PRK06526 transposase; Provisional
Probab=98.10 E-value=2.7e-06 Score=87.83 Aligned_cols=50 Identities=20% Similarity=0.058 Sum_probs=32.2
Q ss_pred CCCCCceechHHH-HHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhC
Q 006254 91 FFPLAAVVGQDAI-KTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAIL 140 (653)
Q Consensus 91 ~~~f~~IvGq~~~-k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l 140 (653)
.|.|+...+.+.. ...|.-...-....+|+|+||||||||++|.+|+..+
T Consensus 72 ~fd~~~~~~~~~~~~~~l~~~~fi~~~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 72 EFDFDHQRSLKRDTIAHLGTLDFVTGKENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred hccCccCCCcchHHHHHHhcCchhhcCceEEEEeCCCCchHHHHHHHHHHH
Confidence 4556655554432 2222111111245789999999999999999998865
No 286
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.06 E-value=1e-05 Score=100.53 Aligned_cols=132 Identities=22% Similarity=0.266 Sum_probs=100.7
Q ss_pred CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeEeC--CCC
Q 006254 115 EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQI--PLG 192 (653)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l--~~~ 192 (653)
+.-++||.||+|+|||.+++.++.... ..++.+ +..
T Consensus 439 ~~~pillqG~tssGKtsii~~la~~~g------------------------------------------~~~vrinnheh 476 (1856)
T KOG1808|consen 439 GKFPILLQGPTSSGKTSIIKELARATG------------------------------------------KNIVRINNHEH 476 (1856)
T ss_pred CCCCeEEecCcCcCchhHHHHHHHHhc------------------------------------------cCceehhcccc
Confidence 345899999999999999999999874 233333 455
Q ss_pred CcccceeeecchhhhhccCCccccccccccc--cCceEEecccccCCHHHHHHHHHHHHc-CceEEeeCCeeEEe-ecCc
Q 006254 193 VTEDRLIGSVDVEESVKTGTTVFQPGLLAEA--HRGVLYIDEINLLDEGISNLLLNVLTE-GVNIVEREGISFKH-PCKP 268 (653)
Q Consensus 193 ~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A--~~giL~IDEi~~l~~~~~~~Ll~~l~~-g~~~v~r~G~s~~~-p~~~ 268 (653)
+...+++|.. .+...|...++.|.+..| +|..+|+||+|+.+.+++++|.++++. +.+.+ .++....+ ..+|
T Consensus 477 td~qeyig~y---~~~~~g~l~freg~LV~Alr~G~~~vlD~lnla~~dvL~aLnrllddnRel~i-pe~~rlv~~h~~f 552 (1856)
T KOG1808|consen 477 TDLQEYIGTY---VADDNGDLVFREGVLVQALRNGDWIVLDELNLAPHDVLEALNRLLDDNRELFI-PETQRLVKAHPEF 552 (1856)
T ss_pred chHHHHHHhh---hcCCCCCeeeehhHHHHHHHhCCEEEeccccccchHHHHHHHhhhhhhccccc-cccceeeccCcch
Confidence 6666888843 355678889999999887 788999999999999999999999998 44433 33333322 3369
Q ss_pred EEEEEecCCC-----CcccHHHHhhhccc
Q 006254 269 LLIATYNPEE-----GVVREHLLDRIAIN 292 (653)
Q Consensus 269 ~lIattNp~e-----g~l~~aLldRf~~~ 292 (653)
++++|-||.. ..+..+|++||...
T Consensus 553 ~lfatqn~~~~y~grk~lsRa~~~rf~e~ 581 (1856)
T KOG1808|consen 553 MLFATQNPPGTYGGRKILSRALRNRFIEL 581 (1856)
T ss_pred hhhhhccCccccchhhhhhhcccccchhh
Confidence 9999999742 35788999998765
No 287
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=98.04 E-value=2.4e-05 Score=78.89 Aligned_cols=89 Identities=20% Similarity=0.209 Sum_probs=69.6
Q ss_pred eEEEEEeCCCCCC----h---hHHHHHHHHHHHHHHhH--cCCCCeEEEEEeecCC---------cEEEcCC-CcCHHHH
Q 006254 563 LVIFVVDASGSMA----L---NRMQNAKGAALKLLAES--YTCRDQVSIIPFRGDS---------AEVLLPP-SRSIAMA 623 (653)
Q Consensus 563 ~v~~vvD~SgSM~----~---~r~~~ak~a~~~ll~~a--y~~rd~v~li~F~~~~---------a~~~lp~-t~~~~~~ 623 (653)
.++|+||+|.||. + .|+..|+.++..++.+- ++..|+||||.|++.. ..++.|+ +.+...+
T Consensus 3 ~ivf~iDvS~SM~~~~~~~~~s~l~~a~~~i~~~~~~ki~~~~~D~vGlilf~t~~~~~~~~~~~i~v~~~l~~~~~~~l 82 (218)
T cd01458 3 SVVFLVDVSPSMFESKDGEYESPFEEALKCIRQLMKSKIISSPKDLVGVVFYGTEESKNPVGYENIYVLLDLDTPGAERV 82 (218)
T ss_pred EEEEEEeCCHHHcCCCCCCCCChHHHHHHHHHHHHHhceeCCCCCeEEEEEEcccCCCCcCCCCceEEeecCCCCCHHHH
Confidence 5899999999993 1 69999999999999652 5899999999997642 2245666 6677777
Q ss_pred HHHHhcCC-----------CCCCCchHHHHHHHHHHHhh
Q 006254 624 RKRLERLP-----------CGGGSPLAHGLSMGWAKCGE 651 (653)
Q Consensus 624 ~~~L~~l~-----------~gG~Tpl~~gl~~a~~~l~~ 651 (653)
+..++.+. .+++|+|..||..|.+++..
T Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~aL~~a~~~~~~ 121 (218)
T cd01458 83 EDLKELIEPGGLSFAGQVGDSGQVSLSDALWVCLDLFSK 121 (218)
T ss_pred HHHHHHhhcchhhhcccCCCCCCccHHHHHHHHHHHHHh
Confidence 76665443 35789999999999999864
No 288
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=2.9e-05 Score=87.63 Aligned_cols=202 Identities=16% Similarity=0.197 Sum_probs=108.5
Q ss_pred CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeEeCCCCCc
Q 006254 115 EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVT 194 (653)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~ 194 (653)
..++|||.||+|+|||.|++++.+++..- ....+..++++..
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~--------------------------------------~~~hv~~v~Cs~l 471 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSKD--------------------------------------LIAHVEIVSCSTL 471 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhccc--------------------------------------cceEEEEEechhc
Confidence 45789999999999999999999987410 0111222344432
Q ss_pred ccceeeecchhhhhccCCccccccccccc---cCceEEecccccCCH----------HHHHHHHHHHHcCceEEeeCCee
Q 006254 195 EDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEINLLDE----------GISNLLLNVLTEGVNIVEREGIS 261 (653)
Q Consensus 195 ~~~l~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~IDEi~~l~~----------~~~~~Ll~~l~~g~~~v~r~G~s 261 (653)
..+=+..+ .+ +....+..+ .+.|++||+++.+-. ...+.|...+.+-...+..
T Consensus 472 ~~~~~e~i--Qk--------~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~---- 537 (952)
T KOG0735|consen 472 DGSSLEKI--QK--------FLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLK---- 537 (952)
T ss_pred cchhHHHH--HH--------HHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHc----
Confidence 21111111 01 111122222 357999999987722 2223333333221111111
Q ss_pred EEeecCcEEEEEecCCCCcccHHHHh--hhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHH
Q 006254 262 FKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILA 339 (653)
Q Consensus 262 ~~~p~~~~lIattNp~eg~l~~aLld--Rf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~a 339 (653)
....+.+|||.+ +-..|.+-|.+ +|...+.+. ++...+|.+|+.-...
T Consensus 538 --~~~~ia~Iat~q-e~qtl~~~L~s~~~Fq~~~~L~-ap~~~~R~~IL~~~~s-------------------------- 587 (952)
T KOG0735|consen 538 --RNRKIAVIATGQ-ELQTLNPLLVSPLLFQIVIALP-APAVTRRKEILTTIFS-------------------------- 587 (952)
T ss_pred --cCcEEEEEEech-hhhhcChhhcCccceEEEEecC-CcchhHHHHHHHHHHH--------------------------
Confidence 112367899988 44444443333 899999998 5689999999873211
Q ss_pred HhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHH----cCCCCccHHHHHHHHHHHcC
Q 006254 340 REYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAAL----EGREKVNVDDLKKAVELVIL 404 (653)
Q Consensus 340 r~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal----~gr~~Vt~eDv~~A~~lvl~ 404 (653)
+.+ ..+..+.++.++.. .+....+....++..|--.|.+ .+...+|.+++.++++--.+
T Consensus 588 -~~~--~~~~~~dLd~ls~~---TEGy~~~DL~ifVeRai~~a~leris~~~klltke~f~ksL~~F~P 650 (952)
T KOG0735|consen 588 -KNL--SDITMDDLDFLSVK---TEGYLATDLVIFVERAIHEAFLERISNGPKLLTKELFEKSLKDFVP 650 (952)
T ss_pred -hhh--hhhhhHHHHHHHHh---cCCccchhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHhcCh
Confidence 111 12233344554333 3333455555555554433432 33447899999998874444
No 289
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=97.94 E-value=8.1e-05 Score=71.84 Aligned_cols=86 Identities=13% Similarity=0.160 Sum_probs=66.5
Q ss_pred eEEEEEeCCCCCChhHHHHHHHHHHHHHHhH--cCCCCeEEEEEeecCCcEEEcCCC--cCHHHHHHHHhcCCC-CC-CC
Q 006254 563 LVIFVVDASGSMALNRMQNAKGAALKLLAES--YTCRDQVSIIPFRGDSAEVLLPPS--RSIAMARKRLERLPC-GG-GS 636 (653)
Q Consensus 563 ~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~a--y~~rd~v~li~F~~~~a~~~lp~t--~~~~~~~~~L~~l~~-gG-~T 636 (653)
.++||||.|+||+...+..+|..+..++... ....-+||||.|++ .+.+.++.. .+...+...|..++. || +|
T Consensus 2 DivfllD~S~Si~~~~f~~~k~fi~~lv~~f~i~~~~~rVgvv~ys~-~~~~~~~l~~~~~~~~l~~~i~~i~~~~g~~t 80 (165)
T cd01481 2 DIVFLIDGSDNVGSGNFPAIRDFIERIVQSLDVGPDKIRVAVVQFSD-TPRPEFYLNTHSTKADVLGAVRRLRLRGGSQL 80 (165)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHHHHHhhccCCCCCcEEEEEEecC-CeeEEEeccccCCHHHHHHHHHhcccCCCCcc
Confidence 6899999999998777778888888887543 23567999999964 466665554 467788888988864 34 58
Q ss_pred chHHHHHHHHHHH
Q 006254 637 PLAHGLSMGWAKC 649 (653)
Q Consensus 637 pl~~gl~~a~~~l 649 (653)
..+.||..+.+.+
T Consensus 81 ~t~~AL~~~~~~~ 93 (165)
T cd01481 81 NTGSALDYVVKNL 93 (165)
T ss_pred cHHHHHHHHHHhh
Confidence 9999999987754
No 290
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=9.1e-05 Score=84.50 Aligned_cols=144 Identities=13% Similarity=0.146 Sum_probs=83.4
Q ss_pred EEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeEeCCCCCcccce
Q 006254 119 IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRL 198 (653)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l 198 (653)
|||.|+||||||+++++++.+++ .+++.+++...-+.-
T Consensus 434 vLLhG~~g~GK~t~V~~vas~lg------------------------------------------~h~~evdc~el~~~s 471 (953)
T KOG0736|consen 434 VLLHGPPGSGKTTVVRAVASELG------------------------------------------LHLLEVDCYELVAES 471 (953)
T ss_pred EEEeCCCCCChHHHHHHHHHHhC------------------------------------------CceEeccHHHHhhcc
Confidence 99999999999999999999986 233333222111111
Q ss_pred eeecchh-hhhccCCccccccccccccCceEEecccccCCHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCC
Q 006254 199 IGSVDVE-ESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE 277 (653)
Q Consensus 199 ~G~~d~~-~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~ 277 (653)
-++.... ...+...+...|-.+-..|--++-||--+-.+-.++..+...+..... ..+. ..+++|++++ .
T Consensus 472 ~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~-------~~~~-~~~ivv~t~~-s 542 (953)
T KOG0736|consen 472 ASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDF-------KFSC-PPVIVVATTS-S 542 (953)
T ss_pred cchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccc-------cCCC-CceEEEEecc-c
Confidence 1110000 111222333444444444444555554444444555555555541110 1111 1478999998 5
Q ss_pred CCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHH
Q 006254 278 EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQF 314 (653)
Q Consensus 278 eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~ 314 (653)
...+++.+..-|-..+.++. ++.++|.+|++....+
T Consensus 543 ~~~lp~~i~~~f~~ei~~~~-lse~qRl~iLq~y~~~ 578 (953)
T KOG0736|consen 543 IEDLPADIQSLFLHEIEVPA-LSEEQRLEILQWYLNH 578 (953)
T ss_pred cccCCHHHHHhhhhhccCCC-CCHHHHHHHHHHHHhc
Confidence 55678888888888888886 4888999998866544
No 291
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.91 E-value=3.2e-05 Score=83.93 Aligned_cols=225 Identities=17% Similarity=0.133 Sum_probs=120.0
Q ss_pred CCCCCceechHHHHHHHHH----hcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCee-eccccccCCCCCCCcccccc
Q 006254 91 FFPLAAVVGQDAIKTALLL----GAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEV-VVGSIANADPTCPDEWEDGL 165 (653)
Q Consensus 91 ~~~f~~IvGq~~~k~aL~~----~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~-v~~~~~nc~p~~~~~~~~~~ 165 (653)
..+-..++|.+.-+..+.. ..-....|.+.+.|-||||||.+...+...+..-.. ...|++||---
T Consensus 146 t~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl--------- 216 (529)
T KOG2227|consen 146 TAPPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSL--------- 216 (529)
T ss_pred cCCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccc---------
Confidence 3456788998876665522 222335678999999999999998877666542211 23467777210
Q ss_pred cccccccccccccccccCCCeEeCCCCCcccceeeec-chhhhhccC---CccccccccccccCceEEecccccCCHHHH
Q 006254 166 DEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSV-DVEESVKTG---TTVFQPGLLAEAHRGVLYIDEINLLDEGIS 241 (653)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~-d~~~~~~~g---~~~~~~Gll~~A~~giL~IDEi~~l~~~~~ 241 (653)
.. .......+++.+ ....+-.+| ...+..-.-.....-++|+||+|.|...-+
T Consensus 217 ~~-----------------------~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~ 273 (529)
T KOG2227|consen 217 TE-----------------------ASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQ 273 (529)
T ss_pred cc-----------------------hHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhccc
Confidence 00 000111112211 000000001 000110001111234889999998865555
Q ss_pred HHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcc-------cccccCCCCHhhHHHHHHHHHHH
Q 006254 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAI-------NLSADLPMTFEDRVAAVGIATQF 314 (653)
Q Consensus 242 ~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~-------~v~l~~p~~~~~r~~I~~~~~~~ 314 (653)
..|+.+.+=-. ....++++||-.|.-+ +-..+|-|+.. .+.+ .|++.++.++|+...+.-
T Consensus 274 ~vLy~lFewp~----------lp~sr~iLiGiANslD--lTdR~LprL~~~~~~~P~~l~F-~PYTk~qI~~Il~~rl~~ 340 (529)
T KOG2227|consen 274 TVLYTLFEWPK----------LPNSRIILIGIANSLD--LTDRFLPRLNLDLTIKPKLLVF-PPYTKDQIVEILQQRLSE 340 (529)
T ss_pred ceeeeehhccc----------CCcceeeeeeehhhhh--HHHHHhhhhhhccCCCCceeee-cCCCHHHHHHHHHHHHhc
Confidence 55544333111 1123688999888311 11222222222 2233 488888888887633221
Q ss_pred HhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCC
Q 006254 315 QERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREK 389 (653)
Q Consensus 315 ~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~ 389 (653)
.+...+-+.+++.++.-+....+ .+|.++.+.|-|-.+|..+++..
T Consensus 341 ----------------------------~~t~~~~~~Aie~~ArKvaa~SG-DlRkaLdv~R~aiEI~E~e~r~~ 386 (529)
T KOG2227|consen 341 ----------------------------ESTSIFLNAAIELCARKVAAPSG-DLRKALDVCRRAIEIAEIEKRKI 386 (529)
T ss_pred ----------------------------ccccccchHHHHHHHHHhccCch-hHHHHHHHHHHHHHHHHHHHhhc
Confidence 12233444667777776655544 58999999999999998887643
No 292
>PRK08181 transposase; Validated
Probab=97.90 E-value=1.2e-05 Score=83.53 Aligned_cols=26 Identities=19% Similarity=0.273 Sum_probs=23.4
Q ss_pred CCceEEEECCCCCHHHHHHHHHHhhC
Q 006254 115 EIGGIAISGRRGTAKTVMARGLHAIL 140 (653)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l 140 (653)
...+|+|+||+|||||+||.+|+..+
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a 130 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLAL 130 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHH
Confidence 45679999999999999999999865
No 293
>PF13337 Lon_2: Putative ATP-dependent Lon protease
Probab=97.88 E-value=0.00012 Score=80.07 Aligned_cols=213 Identities=15% Similarity=0.106 Sum_probs=126.8
Q ss_pred CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeEeCCCCCc
Q 006254 115 EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVT 194 (653)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~ 194 (653)
..-+++=.||+|||||.+=+-|... .+..-....|
T Consensus 207 ~N~NliELgPrGTGKS~vy~eiSp~---------------------------------------------~~liSGG~~T 241 (457)
T PF13337_consen 207 RNYNLIELGPRGTGKSYVYKEISPY---------------------------------------------GILISGGQVT 241 (457)
T ss_pred cccceEEEcCCCCCceeehhhcCcc---------------------------------------------cEEEECCCcc
Confidence 3467999999999999986544321 1111112255
Q ss_pred ccceeeecchhhhhccCCccccccccccccCceEEecccccCC---HHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEE
Q 006254 195 EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLD---EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLI 271 (653)
Q Consensus 195 ~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~---~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lI 271 (653)
...||... ..-+.|++..- -+|.+|||.... ++.+..|-+.|++|. +.|.+.+....+.++++
T Consensus 242 ~A~LFyn~----------~~~~~GlV~~~--D~VafDEv~~i~f~d~d~i~imK~YMesG~--fsRG~~~i~a~as~vf~ 307 (457)
T PF13337_consen 242 VAKLFYNM----------STGQIGLVGRW--DVVAFDEVAGIKFKDKDEIQIMKDYMESGS--FSRGKEEINADASMVFV 307 (457)
T ss_pred hHHheeec----------cCCcceeeeec--cEEEEEeccCcccCChHHHHHHHHHHhccc--eeecccccccceeEEEE
Confidence 56677632 22356777554 389999998874 566699999999998 77877766666667777
Q ss_pred EEecCC-C-------------Ccc-cHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHH
Q 006254 272 ATYNPE-E-------------GVV-REHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQI 336 (653)
Q Consensus 272 attNp~-e-------------g~l-~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i 336 (653)
|-.|.. + ..+ +.||+|||...+ +...-+.-+.++ |...|.-..+-+.+-+
T Consensus 308 GNi~~~v~~~~~~~~lf~~lP~~~~DsAflDRiH~~i--PGWeiPk~~~e~-------------~t~~~gl~~Dy~aE~l 372 (457)
T PF13337_consen 308 GNINQSVENMLKTSHLFEPLPEEMRDSAFLDRIHGYI--PGWEIPKIRPEM-------------FTNGYGLIVDYFAEIL 372 (457)
T ss_pred cCcCCcchhccccchhhhhcCHHHHHHHHHhHhheec--cCccccccCHHH-------------ccCCceeeHHHHHHHH
Confidence 766621 1 112 568999997764 211111111111 1122222222222222
Q ss_pred HHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHH-cCCCCccHHHHHHHHHHHcCCCccc
Q 006254 337 ILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAAL-EGREKVNVDDLKKAVELVILPRSII 409 (653)
Q Consensus 337 ~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal-~gr~~Vt~eDv~~A~~lvl~hR~~~ 409 (653)
..-|+. ...+ .++...++ .+-.+.|....+-+++.++..| .=...++.+|+++.+++++--|++.
T Consensus 373 ~~LR~~----~~~~-~~~~~~~l---g~~~~~RD~~AV~kt~SgllKLL~P~~~~~~ee~~~~l~~A~e~R~rV 438 (457)
T PF13337_consen 373 HELRKQ----SYSD-AVDKYFKL---GSNLSQRDTKAVKKTVSGLLKLLFPHGEFTKEELEECLRPALEMRRRV 438 (457)
T ss_pred HHHHHH----HHHH-HHHhhEee---CCCcchhhHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 222221 1111 11111111 2334678888888888888876 3356899999999999999988763
No 294
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=2.7e-05 Score=85.33 Aligned_cols=138 Identities=20% Similarity=0.281 Sum_probs=81.5
Q ss_pred CceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeEeCCCCCcc
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTE 195 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~ 195 (653)
...|||.||||+|||+||-.++..+ +.|||.+ .+.
T Consensus 538 lvSvLl~Gp~~sGKTaLAA~iA~~S------------------------------------------~FPFvKi---iSp 572 (744)
T KOG0741|consen 538 LVSVLLEGPPGSGKTALAAKIALSS------------------------------------------DFPFVKI---ISP 572 (744)
T ss_pred ceEEEEecCCCCChHHHHHHHHhhc------------------------------------------CCCeEEE---eCh
Confidence 3459999999999999999998854 6888886 334
Q ss_pred cceeeecchhhhhccCCccccccccccc---cCceEEecccccCC----------HHHHHHHHHHHHcCceEEeeCCeeE
Q 006254 196 DRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEINLLD----------EGISNLLLNVLTEGVNIVEREGISF 262 (653)
Q Consensus 196 ~~l~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~IDEi~~l~----------~~~~~~Ll~~l~~g~~~v~r~G~s~ 262 (653)
+.++|--.-++-. .-.+.|..| .-.||+||+|++|= --++.+|+-++.... +-|.
T Consensus 573 e~miG~sEsaKc~------~i~k~F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~p----pkg~-- 640 (744)
T KOG0741|consen 573 EDMIGLSESAKCA------HIKKIFEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQP----PKGR-- 640 (744)
T ss_pred HHccCccHHHHHH------HHHHHHHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCC----CCCc--
Confidence 4556642211111 111222222 23599999999872 234445554444321 1111
Q ss_pred EeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHH
Q 006254 263 KHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQF 314 (653)
Q Consensus 263 ~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~ 314 (653)
+..+++||...+---.-.+++.|+-.+.++.-...++..+++.....|
T Consensus 641 ----kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~~n~f 688 (744)
T KOG0741|consen 641 ----KLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEELNIF 688 (744)
T ss_pred ----eEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHHccCC
Confidence 466777766322111135678888888887555556777777655444
No 295
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.83 E-value=9.6e-05 Score=83.75 Aligned_cols=139 Identities=17% Similarity=0.177 Sum_probs=95.2
Q ss_pred CceEEecccccCCHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecC---CCCcccHHHHhhhcccccccCCCCH
Q 006254 225 RGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP---EEGVVREHLLDRIAINLSADLPMTF 301 (653)
Q Consensus 225 ~giL~IDEi~~l~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp---~eg~l~~aLldRf~~~v~l~~p~~~ 301 (653)
..||+|||++.|=..-|+.|....+--.. -.++++||+-.|. -|..|..-.-.|+++.=-...|++-
T Consensus 509 ~~VvLiDElD~Lvtr~QdVlYn~fdWpt~----------~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth 578 (767)
T KOG1514|consen 509 TTVVLIDELDILVTRSQDVLYNIFDWPTL----------KNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTH 578 (767)
T ss_pred CEEEEeccHHHHhcccHHHHHHHhcCCcC----------CCCceEEEEecccccCHHHHhccchhhhccceeeecCCCCH
Confidence 46999999999977777788777763321 1135666666553 2233444555688875333358998
Q ss_pred hhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH
Q 006254 302 EDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCL 381 (653)
Q Consensus 302 ~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~ 381 (653)
.+..+|+..++.-. -.+..+++++++...+.-.+ ..|.++.+++.|..+
T Consensus 579 ~qLq~Ii~~RL~~~------------------------------~~f~~~aielvarkVAavSG-DaRraldic~RA~Ei 627 (767)
T KOG1514|consen 579 EQLQEIISARLKGL------------------------------DAFENKAIELVARKVAAVSG-DARRALDICRRAAEI 627 (767)
T ss_pred HHHHHHHHHhhcch------------------------------hhcchhHHHHHHHHHHhccc-cHHHHHHHHHHHHHH
Confidence 88888876432211 13577888888776555444 689999999999999
Q ss_pred HHHcCC-------CCccHHHHHHHHHHHcC
Q 006254 382 AALEGR-------EKVNVDDLKKAVELVIL 404 (653)
Q Consensus 382 Aal~gr-------~~Vt~eDv~~A~~lvl~ 404 (653)
|.-... ..|+.-||.+|..-++.
T Consensus 628 a~~~~~~~k~~~~q~v~~~~v~~Ai~em~~ 657 (767)
T KOG1514|consen 628 AEERNVKGKLAVSQLVGILHVMEAINEMLA 657 (767)
T ss_pred hhhhcccccccccceeehHHHHHHHHHHhh
Confidence 876544 67899999999987765
No 296
>TIGR02653 Lon_rel_chp conserved hypothetical protein. This model describes a protein family of unknown function, about 690 residues in length, in which some members show C-terminal sequence similarity to Pfam model pfam05362, which is the Lon protease C-terminal proteolytic domain, from MEROPS family S16. However, the annotated catalytic sites of E. coli Lon protease are not conserved in members of this family. Members have a motif GP[RK][GS]TGKS, similar to the ATP-binding P-loop motif GxxGxGK[ST].
Probab=97.78 E-value=0.00013 Score=83.07 Aligned_cols=167 Identities=14% Similarity=0.139 Sum_probs=104.3
Q ss_pred cccccccccCceEEecccccC---CHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCC--------------C
Q 006254 216 QPGLLAEAHRGVLYIDEINLL---DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE--------------E 278 (653)
Q Consensus 216 ~~Gll~~A~~giL~IDEi~~l---~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~--------------e 278 (653)
++|++..- -++.+|||..+ +++.++.|-+.|++|. +.|.+.+..-.+.++++|-.|.. +
T Consensus 261 ~~GlVg~~--D~VaFDEva~i~f~d~d~v~imK~YM~sG~--FsRG~~~~~a~as~vfvGNi~~~v~~~~k~~~lf~~lP 336 (675)
T TIGR02653 261 QIGLVGMW--DVVAFDEVAGIEFKDKDGVQIMKDYMASGS--FARGKESIEGKASIVFVGNINQSVETLVKTSHLFAPFP 336 (675)
T ss_pred ceeEEeec--cEEEEeeccccccCCHHHHHHHHHHhhcCc--ccccccccccceeEEEEcccCCchHHHhhcccccccCC
Confidence 56666543 38999999875 5678889999999999 78877776767778888887731 1
Q ss_pred Ccc--cHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHH
Q 006254 279 GVV--REHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYL 356 (653)
Q Consensus 279 g~l--~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l 356 (653)
..+ +.||+|||... ++.. + |.+... .-|...|--..+-+.+-+..-|+ ...++. ++..
T Consensus 337 ~~~~~DsAflDRiH~y--iPGW---e----iPk~~~------e~~t~~yGl~~DylsE~l~~lR~----~~~~~~-~~~~ 396 (675)
T TIGR02653 337 EAMRIDTAFFDRFHYY--IPGW---E----IPKMRP------EYFTNRYGFIVDYLAEYMREMRK----RSFADA-IDRF 396 (675)
T ss_pred hhhcccchHHHHhhcc--CcCC---c----CccCCH------HHcccCCcchHHHHHHHHHHHHh----hhHHHH-HHhh
Confidence 233 45899999655 3322 1 111111 11222222222233333333221 112221 1222
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHHHHHH-cCCCCccHHHHHHHHHHHcCCCccc
Q 006254 357 VMEALRGGCQGHRAELYAARVAKCLAAL-EGREKVNVDDLKKAVELVILPRSII 409 (653)
Q Consensus 357 ~~~~~~~~i~s~R~~i~llr~Ara~Aal-~gr~~Vt~eDv~~A~~lvl~hR~~~ 409 (653)
..+ .+..+.|..+.+-++...+..| .=...++.+|+++++++++--|++.
T Consensus 397 ~~l---~~~~~~RD~~aV~kt~SgllKLl~P~~~~~~ee~e~~l~~Ale~RrrV 447 (675)
T TIGR02653 397 FKL---GNNLNQRDVIAVRKTVSGLLKLLYPDGEYTKDDVRECLTYAMEGRRRV 447 (675)
T ss_pred Eec---CCCCchhhHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 222 3445789999999999988887 5556799999999999999988763
No 297
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.76 E-value=1.3e-05 Score=78.44 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=22.3
Q ss_pred CCceEEEECCCCCHHHHHHHHHHhhC
Q 006254 115 EIGGIAISGRRGTAKTVMARGLHAIL 140 (653)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l 140 (653)
...+++|+|++|||||.||-+++..+
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~ 71 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEA 71 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHh
Confidence 45789999999999999999999865
No 298
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.75 E-value=0.00028 Score=74.08 Aligned_cols=165 Identities=16% Similarity=0.025 Sum_probs=90.6
Q ss_pred chHHHHHHHHHhcccCC-CceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccccccccccc
Q 006254 99 GQDAIKTALLLGAIDRE-IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNL 177 (653)
Q Consensus 99 Gq~~~k~aL~~~av~p~-~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~~~~~~~ 177 (653)
+|..++..|.-+.-... .+..||+|+ +||+++|+.++..+ +|........|..|..........
T Consensus 6 ~q~~~~~~L~~~~~~~rl~hAyLf~G~--~G~~~~A~~~A~~l-----------lC~~~~~~~~Cg~C~~C~~i~~~~-- 70 (290)
T PRK07276 6 KQPKVFQRFQTILEQDRLNHAYLFSGD--FASFEMALFLAQSL-----------FCEQKEGVLPCGHCRSCRLIEQGE-- 70 (290)
T ss_pred HHHHHHHHHHHHHHcCCcceeeeeeCC--ccHHHHHHHHHHHH-----------cCCCCCCCCCCCCCHHHHHHhcCC--
Confidence 45566666655444333 345899995 68999999999976 353221222344443311111110
Q ss_pred cccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHHHHHHcCceEEee
Q 006254 178 KTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVER 257 (653)
Q Consensus 178 ~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~l~~g~~~v~r 257 (653)
...|..+... ...++--++..-...- ...| ..+..-|++||++++|.....|+||..+++-.
T Consensus 71 -----HPD~~~i~p~---~~~I~idqIR~l~~~~--~~~p---~~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp----- 132 (290)
T PRK07276 71 -----FSDVTVIEPQ---GQVIKTDTIRELVKNF--SQSG---YEGKQQVFIIKDADKMHVNAANSLLKVIEEPQ----- 132 (290)
T ss_pred -----CCCeeeecCC---CCcCCHHHHHHHHHHH--hhCc---ccCCcEEEEeehhhhcCHHHHHHHHHHhcCCC-----
Confidence 1223333221 1122211111110000 0011 12334699999999999999999999999743
Q ss_pred CCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHH
Q 006254 258 EGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAV 308 (653)
Q Consensus 258 ~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~ 308 (653)
.+.++|-+++ ....+.|-+++|+..+ .+. .+.+...+++
T Consensus 133 --------~~t~~iL~t~-~~~~lLpTI~SRcq~i-~f~--~~~~~~~~~L 171 (290)
T PRK07276 133 --------SEIYIFLLTN-DENKVLPTIKSRTQIF-HFP--KNEAYLIQLL 171 (290)
T ss_pred --------CCeEEEEEEC-ChhhCchHHHHcceee-eCC--CcHHHHHHHH
Confidence 3455666666 6777889999999766 664 3444433333
No 299
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.75 E-value=6.7e-05 Score=72.69 Aligned_cols=136 Identities=19% Similarity=0.257 Sum_probs=65.9
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeEeCCCCCcccc
Q 006254 118 GIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDR 197 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~ 197 (653)
+|+|+|+||+||||+++.+.+.+... -+..|.|-|-+ .+. .+ ...-|..+....-+..
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~-~~~v~Gf~t~e---------vr~------~g------~r~GF~iv~l~~g~~~ 58 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKK-GLPVGGFYTEE---------VRE------NG------RRIGFDIVDLNSGEEA 58 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHT-CGGEEEEEEEE---------EET------TS------SEEEEEEEET-TS-EE
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhcc-CCccceEEeec---------ccC------CC------ceEEEEEEECcCCCcc
Confidence 58999999999999999999987310 01112222200 000 00 0111222222223333
Q ss_pred eeeecchhhhhccCCcccc--------cccccc--ccCceEEecccccC---CHHHHHHHHHHHHcCceEEeeCCeeEEe
Q 006254 198 LIGSVDVEESVKTGTTVFQ--------PGLLAE--AHRGVLYIDEINLL---DEGISNLLLNVLTEGVNIVEREGISFKH 264 (653)
Q Consensus 198 l~G~~d~~~~~~~g~~~~~--------~Gll~~--A~~giL~IDEi~~l---~~~~~~~Ll~~l~~g~~~v~r~G~s~~~ 264 (653)
++...+.....+-|...+. -..|.. .+..+++||||..| ++...+.+..+++...
T Consensus 59 ~la~~~~~~~~~vgky~v~~e~fe~~~~~~L~~~~~~~~liviDEIG~mEl~~~~F~~~v~~~l~s~~------------ 126 (168)
T PF03266_consen 59 ILARVDFRSGPRVGKYFVDLESFEEIGLPALRNALSSSDLIVIDEIGKMELKSPGFREAVEKLLDSNK------------ 126 (168)
T ss_dssp EEEETTSS-SCECTTCEE-HHHHHCCCCCCCHHHHHCCHEEEE---STTCCC-CHHHHHHHHHHCTTS------------
T ss_pred ccccccccccccCCCEEEcHHHHHHHHHHHHHhhcCCCCEEEEeccchhhhcCHHHHHHHHHHHcCCC------------
Confidence 4444332222222332211 112332 25569999999876 6788999999998554
Q ss_pred ecCcEEEEEecCC-CCcccHHHHhhhcc
Q 006254 265 PCKPLLIATYNPE-EGVVREHLLDRIAI 291 (653)
Q Consensus 265 p~~~~lIattNp~-eg~l~~aLldRf~~ 291 (653)
.+||+-... ...+-..+..|=+.
T Consensus 127 ----~vi~vv~~~~~~~~l~~i~~~~~~ 150 (168)
T PF03266_consen 127 ----PVIGVVHKRSDNPFLEEIKRRPDV 150 (168)
T ss_dssp ----EEEEE--SS--SCCHHHHHTTTTS
T ss_pred ----cEEEEEecCCCcHHHHHHHhCCCc
Confidence 477776644 44555666666443
No 300
>TIGR02877 spore_yhbH sporulation protein YhbH. This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.
Probab=97.73 E-value=0.00025 Score=75.72 Aligned_cols=125 Identities=22% Similarity=0.267 Sum_probs=80.1
Q ss_pred CCCCCcChhHhHHhhCCcchhhhccccccccceeeecCcchhhhhhc----cCCceEEEEEeCCCCCChhHHHHHHHHH-
Q 006254 512 GPIKRLAVDATLRAAAPYQKLRRERDTQKTRKVFVEKTDMRAKRMAR----KAGALVIFVVDASGSMALNRMQNAKGAA- 586 (653)
Q Consensus 512 ~~~~~i~~~aTl~~aap~q~~r~~~~~~~~~~~~i~~~dl~~~~~~~----~~~~~v~~vvD~SgSM~~~r~~~ak~a~- 586 (653)
|....||+..|++.|.- |+. ..+....+-|.+.|||.+.++. .+.+.++++.|+||||+..+-..||-.-
T Consensus 154 G~~s~l~~~RT~r~al~----Rri-a~~~p~~~Pi~~~DlRYr~~~~~~~P~s~AV~fc~MDvSGSM~~~~K~lak~ff~ 228 (371)
T TIGR02877 154 GLMPNLDKKRTVIEALK----RNQ-LRGRPELYPITKEDLRYKTWKENEKPESNAVVIAMMDTSGSMGQFKKYIARSFFF 228 (371)
T ss_pred CCcccchHHHHHHHHHH----HHh-hccCCCccCCCcccccccccccccCccCcEEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 33457999999999762 221 1223345668899999876654 4567788888999999864433444332
Q ss_pred --HHHHHhHcCCCCeEEEEEeecC-CcEEEcCCCcCHHHHHHHHhcCCCCCCCchHHHHHHHHHHHhhcC
Q 006254 587 --LKLLAESYTCRDQVSIIPFRGD-SAEVLLPPSRSIAMARKRLERLPCGGGSPLAHGLSMGWAKCGEEW 653 (653)
Q Consensus 587 --~~ll~~ay~~rd~v~li~F~~~-~a~~~lp~t~~~~~~~~~L~~l~~gG~Tpl~~gl~~a~~~l~~~~ 653 (653)
-.+|...| ++|=+|--..+ .|..+ . +..+=...-+|||-..+|+.+|.+.+.++|
T Consensus 229 ~ly~FL~~~Y---~~VeivFI~H~t~AkEV-d--------EeeFF~~~EsGGT~vSSA~~l~~eII~~rY 286 (371)
T TIGR02877 229 WMVKFLRTKY---ENVEICFISHHTEAKEV-T--------EEEFFHKGESGGTYCSSGYKKALEIIDERY 286 (371)
T ss_pred HHHHHHHhcc---CceEEEEEeecCeeEEc-C--------HHHhcccCCCCCeEehHHHHHHHHHHHhhC
Confidence 22333344 44444333322 23222 1 234446678899999999999999999876
No 301
>PF13173 AAA_14: AAA domain
Probab=97.71 E-value=5.1e-05 Score=69.90 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=22.0
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.-++|.||+|+||||+++.+++.+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc
Confidence 4589999999999999999997653
No 302
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.71 E-value=0.00012 Score=69.31 Aligned_cols=155 Identities=21% Similarity=0.188 Sum_probs=80.0
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeEeCCCCCccc
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTED 196 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~ 196 (653)
..|+|+|+||+||||++.-|++.|..-. ...+.|-| ...++ .....-|-.+...+-+.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g-~kvgGf~t---------~EVR~------------gGkR~GF~Ivdl~tg~~ 63 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKG-YKVGGFIT---------PEVRE------------GGKRIGFKIVDLATGEE 63 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcC-ceeeeEEe---------eeeec------------CCeEeeeEEEEccCCce
Confidence 4699999999999999999999886321 11111222 11110 01122344444444444
Q ss_pred ceeeecchhhhhccCCcc-cccc-------ccccc--cCceEEecccccC---CHHHHHHHHHHHHcCceEEeeCCeeEE
Q 006254 197 RLIGSVDVEESVKTGTTV-FQPG-------LLAEA--HRGVLYIDEINLL---DEGISNLLLNVLTEGVNIVEREGISFK 263 (653)
Q Consensus 197 ~l~G~~d~~~~~~~g~~~-~~~G-------ll~~A--~~giL~IDEi~~l---~~~~~~~Ll~~l~~g~~~v~r~G~s~~ 263 (653)
.++-..+. ...+-|+.. +..+ .+..| +.-+++||||.-| +......+-.+|+++.
T Consensus 64 ~~la~~~~-~~~rvGkY~V~v~~le~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~k----------- 131 (179)
T COG1618 64 GILARVGF-SRPRVGKYGVNVEGLEEIAIPALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKSGK----------- 131 (179)
T ss_pred EEEEEcCC-CCcccceEEeeHHHHHHHhHHHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcCCC-----------
Confidence 45544332 111112211 1100 11122 2359999999866 6677778888887765
Q ss_pred eecCcEEEEEecCCC-CcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHH
Q 006254 264 HPCKPLLIATYNPEE-GVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQF 314 (653)
Q Consensus 264 ~p~~~~lIattNp~e-g~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~ 314 (653)
-+|+|-.... ..+-..+..+++..+.+ +++.|..|+..+++.
T Consensus 132 -----pliatlHrrsr~P~v~~ik~~~~v~v~l----t~~NR~~i~~~Il~~ 174 (179)
T COG1618 132 -----PLIATLHRRSRHPLVQRIKKLGGVYVFL----TPENRNRILNEILSV 174 (179)
T ss_pred -----cEEEEEecccCChHHHHhhhcCCEEEEE----ccchhhHHHHHHHHH
Confidence 2777754221 11223344455555434 445555676655443
No 303
>PRK09183 transposase/IS protein; Provisional
Probab=97.68 E-value=4.1e-05 Score=79.44 Aligned_cols=50 Identities=18% Similarity=0.106 Sum_probs=33.0
Q ss_pred CCCCCceechHH-HHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhC
Q 006254 91 FFPLAAVVGQDA-IKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAIL 140 (653)
Q Consensus 91 ~~~f~~IvGq~~-~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l 140 (653)
.|.|+...|.+. ....|.-...-....+|+|+||+|||||+|+.+|+..+
T Consensus 76 ~fd~~~~~~~~~~~i~~L~~~~~i~~~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 76 EYDFTFATGAPQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred hcccccCCCCCHHHHHHHhcCCchhcCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 456666656543 33444211112345679999999999999999998764
No 304
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.63 E-value=4.9e-05 Score=77.95 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=23.6
Q ss_pred CceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~ 141 (653)
..+++|+|++|||||+|+.+|+..+.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~ 124 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELL 124 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 35899999999999999999999874
No 305
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.63 E-value=8.5e-05 Score=66.34 Aligned_cols=49 Identities=18% Similarity=0.224 Sum_probs=32.6
Q ss_pred ceEEecccccCCHH----HHHHHHHHHHcCceEEeeCCee---EEeecCcEEEEEec
Q 006254 226 GVLYIDEINLLDEG----ISNLLLNVLTEGVNIVEREGIS---FKHPCKPLLIATYN 275 (653)
Q Consensus 226 giL~IDEi~~l~~~----~~~~Ll~~l~~g~~~v~r~G~s---~~~p~~~~lIattN 275 (653)
.++++||+...... ....|+++++.....+.-.+.. ....+ -+||.|+|
T Consensus 51 ~vvi~DD~~~~~~~~~~~~~~~l~~l~s~~~~~~~~a~~~~K~~~~~s-~~vi~tsN 106 (107)
T PF00910_consen 51 PVVIIDDFGQDNDGYNYSDESELIRLISSNPFQPNMADLEDKGTPFNS-KLVIITSN 106 (107)
T ss_pred cEEEEeecCccccccchHHHHHHHHHHhcCCcccccccHhhCCCccCC-CEEEEcCC
Confidence 58999999988754 6788888888877555433332 12222 35777777
No 306
>PRK10536 hypothetical protein; Provisional
Probab=97.60 E-value=0.00011 Score=75.26 Aligned_cols=48 Identities=15% Similarity=0.104 Sum_probs=37.0
Q ss_pred CCCCCCceechHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhh
Q 006254 90 QFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 90 ~~~~f~~IvGq~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~ 139 (653)
..+.+..|.+.......++.++.+ ..-|++.||+|||||++|.+++..
T Consensus 50 ~~~~~~~i~p~n~~Q~~~l~al~~--~~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 50 DSRDTSPILARNEAQAHYLKAIES--KQLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred hhcCCccccCCCHHHHHHHHHHhc--CCeEEEECCCCCCHHHHHHHHHHH
Confidence 346677788887776666554442 357999999999999999999884
No 307
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.59 E-value=3.8e-05 Score=82.24 Aligned_cols=53 Identities=19% Similarity=0.244 Sum_probs=36.7
Q ss_pred ceEEeccccc--CCHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCc----ccHHHHhhhc
Q 006254 226 GVLYIDEINL--LDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGV----VREHLLDRIA 290 (653)
Q Consensus 226 giL~IDEi~~--l~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~----l~~aLldRf~ 290 (653)
-+|+||++.. ..+..+..|+.+++..... .--+|.|||....+ +.+.+.+|+.
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~------------~k~tIiTSNl~~~el~~~~~eri~SRL~ 306 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLR------------QKKMIISTNLSLEELLKTYSERISSRLL 306 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHC------------CCCEEEECCCCHHHHHHHHhHHHHHHHH
Confidence 5999999955 4677788899988865411 12367788865443 4567888884
No 308
>PRK06921 hypothetical protein; Provisional
Probab=97.59 E-value=3.5e-05 Score=80.23 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=24.1
Q ss_pred CCceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 115 EIGGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l~ 141 (653)
...+++|+|++|||||+|+.+|+..+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~ 142 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELM 142 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHh
Confidence 356799999999999999999999764
No 309
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.58 E-value=8.3e-05 Score=76.89 Aligned_cols=28 Identities=21% Similarity=0.222 Sum_probs=25.3
Q ss_pred CCCceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 114 REIGGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 114 p~~~gVLL~GppGTGKT~lArala~~l~ 141 (653)
+...+++|+|+||||||.||-+|+..+-
T Consensus 103 ~~~~nl~l~G~~G~GKThLa~Ai~~~l~ 130 (254)
T COG1484 103 ERGENLVLLGPPGVGKTHLAIAIGNELL 130 (254)
T ss_pred ccCCcEEEECCCCCcHHHHHHHHHHHHH
Confidence 3678899999999999999999999873
No 310
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.56 E-value=1.8e-05 Score=72.37 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=20.6
Q ss_pred CceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.+.++|+|++|+|||++++.+...+.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~ 29 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLN 29 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhH
Confidence 46699999999999999999999874
No 311
>COG2766 PrkA Putative Ser protein kinase [Signal transduction mechanisms]
Probab=97.55 E-value=0.00019 Score=79.45 Aligned_cols=260 Identities=17% Similarity=0.177 Sum_probs=156.9
Q ss_pred CCCceechHHHHHHHHH----hc--ccCCCceEEEECCCCCHHHHHHHHHHhhCCC--Cee----eccccccCCCCC---
Q 006254 93 PLAAVVGQDAIKTALLL----GA--IDREIGGIAISGRRGTAKTVMARGLHAILPP--IEV----VVGSIANADPTC--- 157 (653)
Q Consensus 93 ~f~~IvGq~~~k~aL~~----~a--v~p~~~gVLL~GppGTGKT~lArala~~l~~--~~~----v~~~~~nc~p~~--- 157 (653)
-|+++-|.++.+..+.- ++ ..+....++|.||.|.|||+++..+...+.. +.. ..+||.+-+|-+
T Consensus 74 ~f~~ffG~eesI~~~v~~~~~aa~~le~~kqiL~LlGPVggGKSsl~e~lk~~~e~~pi~~~~~~~~~sPv~e~PL~Lf~ 153 (649)
T COG2766 74 AFNDFFGMEESIEQIVGYFKHAAQGLEERKQILYLLGPVGGGKSSLAERLKRLMERVPIYDLDANGKGSPVHESPLHLFP 153 (649)
T ss_pred hHhhhccHHHHHHHHHHHHhhhhhccchhhhhheeeccCCCchHHHHHHHHHHhhhCCceecccccCcCCCcCCCcccCC
Confidence 36899999888777721 11 2234456999999999999999999988764 222 346888888753
Q ss_pred CCcc-------------------cccccccccccccccccccccCCCeEe-------------C----CCCCcccceeee
Q 006254 158 PDEW-------------------EDGLDEKAEYDTAGNLKTQIARSPFVQ-------------I----PLGVTEDRLIGS 201 (653)
Q Consensus 158 ~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~fv~-------------l----~~~~~~~~l~G~ 201 (653)
++.. +..+..++...-.+.+. ...++. . +.+-.++.|.|.
T Consensus 154 pd~l~~~~e~~ygi~~~~~~~~lsP~~~~rL~~E~~gdi~----~~~Vv~~~~S~~r~~gIg~~eP~D~~nQD~s~L~G~ 229 (649)
T COG2766 154 PDHLADDLEHEYGIRRRRLEGDLSPWARKRLDHEYGGDIE----KFAVVKLNPSILRRIGIGKTEPGDENNQDISALTGK 229 (649)
T ss_pred HHHhhhhhhhhccchhhhccCCCCHHHHHHHHHHhCCccc----eeEEEEeecchhccceeeecCCCCCCCcchhHhhcc
Confidence 1111 11222222111111111 111111 1 223344578999
Q ss_pred cchhhhhccCCccc----cccccccccCceEEecccccCCHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCC
Q 006254 202 VDVEESVKTGTTVF----QPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE 277 (653)
Q Consensus 202 ~d~~~~~~~g~~~~----~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~ 277 (653)
+|+.+--..|..-. -.|.|..+++|++=+=|.-..+.+++..||.+-++|.+.-. ++--..|.+=+|||.+|..
T Consensus 230 Vdi~kL~~yge~DP~Aysy~Gal~~aNrGl~ef~Em~K~~~k~L~~lLtaTQEg~~k~~--~~~~~i~~d~lIvahsNes 307 (649)
T COG2766 230 VDISKLEHYGESDPRAYSYSGALCRANRGLMEFVEMFKAPIKVLHPLLTATQEGNYKGT--EGIGAIPFDGLIVAHSNES 307 (649)
T ss_pred ccHHHHhhcccCCchhhcccchhhcccchHHHHHHHHhCcHHHHHHHhcccccCccCCC--CCcCccccCceEEeecCcH
Confidence 99887666664322 25999999999999999999999999999999999984322 2223356666889999964
Q ss_pred CC------cccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHH
Q 006254 278 EG------VVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGRE 351 (653)
Q Consensus 278 eg------~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~ 351 (653)
|+ .-.++|+||+-.+ .+++-....+...|.+..+. ..-+.++.|.+.
T Consensus 308 E~q~fk~n~~nEAf~dRi~~v-~vPY~L~vseE~kIYEKll~--------------------------~s~ls~~h~APh 360 (649)
T COG2766 308 EWQTFKNNKNNEAFLDRIYKV-KVPYCLRVSEEAKIYEKLLQ--------------------------NSELSDAHCAPH 360 (649)
T ss_pred HHHHhhcCCchHHHHhheeee-ecceeeeecHHHHHHHHHhc--------------------------cccccccccCch
Confidence 53 2348999998665 77544444444445432211 122344667777
Q ss_pred HHHHHHHHHHhcCCC-CcchHHHHHHHHHHHHHHcCCC
Q 006254 352 QLKYLVMEALRGGCQ-GHRAELYAARVAKCLAALEGRE 388 (653)
Q Consensus 352 ~l~~l~~~~~~~~i~-s~R~~i~llr~Ara~Aal~gr~ 388 (653)
.++.++.+..-..+. ....++.++.- .+.+.|+.
T Consensus 361 TL~~aa~FsVlTRLkep~~~~~~ll~K---mr~Y~GE~ 395 (649)
T COG2766 361 TLEVAALFSVLTRLKEPDNSDIDLLSK---MRLYDGES 395 (649)
T ss_pred HHHHHHHHHHHhhccCcccccHHHHHH---HHHhcCcc
Confidence 777777664333221 22334444433 34555554
No 312
>COG4867 Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.52 E-value=0.00028 Score=75.13 Aligned_cols=135 Identities=23% Similarity=0.273 Sum_probs=92.7
Q ss_pred CCcccccCCCC--CCCCCcChhHhHHhhCCcchhhhccccccccceeeecCcchhhhhhccCCceEEEEEeCCCCCCh-h
Q 006254 501 RGRYIKPMLPK--GPIKRLAVDATLRAAAPYQKLRRERDTQKTRKVFVEKTDMRAKRMARKAGALVIFVVDASGSMAL-N 577 (653)
Q Consensus 501 ~Gr~~~~~~~~--~~~~~i~~~aTl~~aap~q~~r~~~~~~~~~~~~i~~~dl~~~~~~~~~~~~v~~vvD~SgSM~~-~ 577 (653)
.|...++.+|. |..--.|+.+||..+.- |... ....++.|.-+|+.++.-+.++...|+++||+|-||.. .
T Consensus 407 ~gE~TGa~rpY~FGDT~pwDvTrTltNai~----r~a~--~~~E~~ri~~~Dvev~etE~rt~aAvallvDtS~SM~~eG 480 (652)
T COG4867 407 AGELTGATRPYQFGDTEPWDVTRTLTNAVL----RQAA--AVHERIRITVEDVEVAETETRTQAAVALLVDTSFSMVMEG 480 (652)
T ss_pred ccccccCcCCcccCCCCccHHHHHHHHHHH----Hhhh--hhhhhhhccccceeehhhhhhcccceeeeeeccHHHHHhc
Confidence 34444544443 33446788899988662 2111 12345888999999999999999999999999999954 2
Q ss_pred H---HHHHHHHHHHHHHhHcCCCCeEEEEEeecCCcEEEcCCCcCHHHHHHHHhcCCC--CCCCchHHHHHHHHHHHhhc
Q 006254 578 R---MQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPC--GGGSPLAHGLSMGWAKCGEE 652 (653)
Q Consensus 578 r---~~~ak~a~~~ll~~ay~~rd~v~li~F~~~~a~~~lp~t~~~~~~~~~L~~l~~--gG~Tpl~~gl~~a~~~l~~~ 652 (653)
| |..+.-|+..|+ ...-.+|.|.+|+|+ ..++.+ | ...|..+++ .-+|++.+||.+|-+.|+.+
T Consensus 481 Rw~PmKQtALALhHLv-~TrfrGD~l~~i~Fg-r~A~~v-~--------v~eLt~l~~v~eqgTNlhhaL~LA~r~l~Rh 549 (652)
T COG4867 481 RWLPMKQTALALHHLV-CTRFRGDALQIIAFG-RYARTV-T--------AAELTGLAGVYEQGTNLHHALALAGRHLRRH 549 (652)
T ss_pred cCCchHHHHHHHHHHH-HhcCCCcceEEEecc-chhccc-C--------HHHHhcCCCccccccchHHHHHHHHHHHHhC
Confidence 3 444444555555 444578999999995 434332 1 235666663 47899999999999988753
No 313
>PF13335 Mg_chelatase_2: Magnesium chelatase, subunit ChlI
Probab=97.52 E-value=0.00028 Score=61.81 Aligned_cols=56 Identities=25% Similarity=0.299 Sum_probs=49.7
Q ss_pred ccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHHHH
Q 006254 345 DVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVEL 401 (653)
Q Consensus 345 ~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~l 401 (653)
.+.++++....|-..+...+. |.|+...++++|+++|+|+|.+.|+.+||.+|+.|
T Consensus 40 ~~~l~~~~~~~l~~~~~~~~l-S~R~~~rilrvARTIADL~~~~~I~~~hi~EAl~y 95 (96)
T PF13335_consen 40 YCPLSSEAKKLLEQAAEKLNL-SARGYHRILRVARTIADLEGSERITREHIAEALSY 95 (96)
T ss_pred HcCCCHHHHHHHHHHHHHcCc-CHHHHHHHHHHHHHHHhHcCCCCCCHHHHHHHHhC
Confidence 357888888877777777766 89999999999999999999999999999999875
No 314
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.49 E-value=0.00023 Score=71.13 Aligned_cols=45 Identities=20% Similarity=0.165 Sum_probs=33.3
Q ss_pred eechHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 97 VVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 97 IvGq~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~ 141 (653)
++|++...+.|.-.+-......++|+||.|+|||++++.+...+.
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~ 45 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELK 45 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhh
Confidence 367887777775544333457899999999999999999999884
No 315
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=97.47 E-value=0.00037 Score=68.43 Aligned_cols=83 Identities=17% Similarity=0.148 Sum_probs=60.3
Q ss_pred eEEEEEeCCCCC----C--h---hHHHHHHHHHHHHHH-hHcCCCCeEEEEEeecCCcE-----EEcCCCcCH---HHHH
Q 006254 563 LVIFVVDASGSM----A--L---NRMQNAKGAALKLLA-ESYTCRDQVSIIPFRGDSAE-----VLLPPSRSI---AMAR 624 (653)
Q Consensus 563 ~v~~vvD~SgSM----~--~---~r~~~ak~a~~~ll~-~ay~~rd~v~li~F~~~~a~-----~~lp~t~~~---~~~~ 624 (653)
.++|+||.|||| + + +||+++|..+..|.. ...+..|+|| |.|+.+. +-.|||.+. ..+.
T Consensus 2 ~l~lavDlSgSM~~~~~~dg~~~~RL~a~k~v~~~f~~f~~~r~~DriG---~~g~~~~~~~lt~d~p~t~d~~~~~~l~ 78 (191)
T cd01455 2 RLKLVVDVSGSMYRFNGYDGRLDRSLEAVVMVMEAFDGFEDKIQYDIIG---HSGDGPCVPFVKTNHPPKNNKERLETLK 78 (191)
T ss_pred ceEEEEECcHhHHHHhccCCccccHHHHHHHHHHHHHHHHHhCccceee---ecCcccccCccccccCcccchhHHHHHH
Confidence 478999999999 1 1 799999999888852 1347888888 5555432 123555554 6777
Q ss_pred HHHhcCCC---CCCCchHHHHHHHHHHHh
Q 006254 625 KRLERLPC---GGGSPLAHGLSMGWAKCG 650 (653)
Q Consensus 625 ~~L~~l~~---gG~Tpl~~gl~~a~~~l~ 650 (653)
..|+.+.. |.+|. +||..|.+.|.
T Consensus 79 ~~l~~~q~g~ag~~Ta--dAi~~av~rl~ 105 (191)
T cd01455 79 MMHAHSQFCWSGDHTV--EATEFAIKELA 105 (191)
T ss_pred HHHHhcccCccCccHH--HHHHHHHHHHH
Confidence 88887764 47777 99999999885
No 316
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.46 E-value=0.00014 Score=78.94 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=25.3
Q ss_pred CCceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 115 EIGGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l~ 141 (653)
...||.|+|+.|+|||+|.-.+.+.+|
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp 87 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLP 87 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCC
Confidence 468999999999999999999999887
No 317
>PHA01747 putative ATP-dependent protease
Probab=97.46 E-value=0.00039 Score=73.91 Aligned_cols=119 Identities=21% Similarity=0.143 Sum_probs=77.1
Q ss_pred CceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeEeCCCCCcc
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTE 195 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~ 195 (653)
.-+++=.||+|||||++-+.+....|- ..-....|.
T Consensus 190 NyNliELgPRGTGKS~~f~eis~fsp~--------------------------------------------~iSGG~~Tv 225 (425)
T PHA01747 190 PVHIIELSNRGTGKTTTFVILQELFNF--------------------------------------------RYYTEPPTY 225 (425)
T ss_pred CeeEEEecCCCCChhhHHHHhhhcCCc--------------------------------------------eeeCCCCch
Confidence 456888999999999999988775541 111122444
Q ss_pred cceeeecchhhhhccCCccccccccccccCceEEecccccCC----HHHHHHHHHHHHcCceEEeeCCe------eEEee
Q 006254 196 DRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLD----EGISNLLLNVLTEGVNIVEREGI------SFKHP 265 (653)
Q Consensus 196 ~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~----~~~~~~Ll~~l~~g~~~v~r~G~------s~~~p 265 (653)
..||.. ...-+.|++...+ +|++|||.... .+++..|.+.|++|. +.|.+. ++...
T Consensus 226 A~LFyN----------~~t~~~GLVg~~D--~VaFDEVa~i~f~~~kdiv~IMKdYMesG~--FsRG~~~~ss~~sI~a~ 291 (425)
T PHA01747 226 ANLVYD----------AKTNALGLVFLSN--GLIFDEIQTWKDSNMRAINSTLSTGMENCV--WTRGAGTESDAATIVRC 291 (425)
T ss_pred HHheEe----------cCCCceeEEeecc--EEEEEccccccCCCHHHHHHHHHHHhhcce--eecCCCCcccchhhccc
Confidence 556653 2223467765543 89999999864 578999999999998 777665 22223
Q ss_pred cCcEEEEEec-CC------CC----------c---ccHHHHhhhccc
Q 006254 266 CKPLLIATYN-PE------EG----------V---VREHLLDRIAIN 292 (653)
Q Consensus 266 ~~~~lIattN-p~------eg----------~---l~~aLldRf~~~ 292 (653)
+.++++|-.| |. +. - +..||+|||.+.
T Consensus 292 asiVf~GNin~~~l~~~~~~~~l~~~Lp~~~~~r~~~sA~LDRIhi~ 338 (425)
T PHA01747 292 IPIIFAGNPDSSTLDTYQTPNYIKNYLVSYELFQSLTKAILDRIAII 338 (425)
T ss_pred eeEEEecCCCCccccccccchhHHHhcchhhhhcccchHHhhhhhhc
Confidence 4445555444 21 11 1 257999999843
No 318
>PF01882 DUF58: Protein of unknown function DUF58; InterPro: IPR002881 This domain is found in a family of prokaryotic proteins that have no known function. Proteins belonging to this family include hypothetical proteins from eubacteria and archaebacteria. Some of these proteins also contain the Von Willebrand factor, type A domain (see IPR002035 from INTERPRO).
Probab=97.44 E-value=0.00015 Score=61.92 Aligned_cols=75 Identities=25% Similarity=0.415 Sum_probs=63.6
Q ss_pred cccCCCCCCCCCcChhHhHHhhCCcchhhhccccccccceeeecCcchhhhhhccCCceEEEEEeCCCCCCh-----hHH
Q 006254 505 IKPMLPKGPIKRLAVDATLRAAAPYQKLRRERDTQKTRKVFVEKTDMRAKRMARKAGALVIFVVDASGSMAL-----NRM 579 (653)
Q Consensus 505 ~~~~~~~~~~~~i~~~aTl~~aap~q~~r~~~~~~~~~~~~i~~~dl~~~~~~~~~~~~v~~vvD~SgSM~~-----~r~ 579 (653)
+|+..|+.+.++|||.+|.|. +.|.+|.++......+++++|+++||.. ..+
T Consensus 7 lR~Y~~GD~~r~I~Wk~sAr~-----------------------~~l~vk~~~~~~~~~~~i~ld~~~~~~~~~~~~~~~ 63 (86)
T PF01882_consen 7 LRPYQPGDPLRRIHWKASART-----------------------GELMVKEFEEERSQPVWIVLDLSPSMYFGSNGRSKF 63 (86)
T ss_pred ccCCCCCCchHHhhHHHHhCC-----------------------CCcEEEEeecccCCcEEEEEECCCccccCcCCCCHH
Confidence 456667777889999999874 2688899999999999999999999954 678
Q ss_pred HHHHHHHHHHHHhHcCCCCeEEE
Q 006254 580 QNAKGAALKLLAESYTCRDQVSI 602 (653)
Q Consensus 580 ~~ak~a~~~ll~~ay~~rd~v~l 602 (653)
+.+-.++.+++..+.++++.|+|
T Consensus 64 e~~l~~a~~l~~~~~~~g~~v~L 86 (86)
T PF01882_consen 64 ERALSAAASLANQALRQGDPVGL 86 (86)
T ss_pred HHHHHHHHHHHHHHHhcCCcccC
Confidence 88888889999889999999875
No 319
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.34 E-value=0.00038 Score=69.09 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=21.6
Q ss_pred CceEEecccccCCHHHHHHHHHHHHc
Q 006254 225 RGVLYIDEINLLDEGISNLLLNVLTE 250 (653)
Q Consensus 225 ~giL~IDEi~~l~~~~~~~Ll~~l~~ 250 (653)
..+|+|||+..++......|+..+..
T Consensus 94 ~~vliVDEasmv~~~~~~~ll~~~~~ 119 (196)
T PF13604_consen 94 KDVLIVDEASMVDSRQLARLLRLAKK 119 (196)
T ss_dssp TSEEEESSGGG-BHHHHHHHHHHS-T
T ss_pred ccEEEEecccccCHHHHHHHHHHHHh
Confidence 45999999999999999999998876
No 320
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.30 E-value=0.0079 Score=68.34 Aligned_cols=57 Identities=14% Similarity=0.005 Sum_probs=38.7
Q ss_pred cccCCCCCCCCceechHHHHHHH---HHhcccCC--CceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 85 DSYGRQFFPLAAVVGQDAIKTAL---LLGAIDRE--IGGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 85 ~~~~~~~~~f~~IvGq~~~k~aL---~~~av~p~--~~gVLL~GppGTGKT~lArala~~l~ 141 (653)
...+..|...++++-+..-...+ +...+.+. ..-+||+||+||||||+++.|++.+.
T Consensus 9 W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg 70 (519)
T PF03215_consen 9 WVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG 70 (519)
T ss_pred cchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 33456677778887776433333 22233222 23488899999999999999999986
No 321
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.28 E-value=0.0024 Score=65.03 Aligned_cols=133 Identities=20% Similarity=0.153 Sum_probs=79.9
Q ss_pred ceEEecccccCCHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCc---ccHHHHhhhcccccccCCCCHh
Q 006254 226 GVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGV---VREHLLDRIAINLSADLPMTFE 302 (653)
Q Consensus 226 giL~IDEi~~l~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~---l~~aLldRf~~~v~l~~p~~~~ 302 (653)
-++++||.+.+..+....|....+- . + ++. .+..+++||=...++.- --.++-.|+.+++.+. |.+.+
T Consensus 133 v~l~vdEah~L~~~~le~Lrll~nl-~---~-~~~---~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~-P~~~~ 203 (269)
T COG3267 133 VVLMVDEAHDLNDSALEALRLLTNL-E---E-DSS---KLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELP-PLTEA 203 (269)
T ss_pred eEEeehhHhhhChhHHHHHHHHHhh-c---c-ccc---CceeeeecCCcccchhhchHHHHhhhheEEEEEecC-CcChH
Confidence 4788999999999988887776542 1 1 111 12345566643322211 1134556888876776 66655
Q ss_pred hHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Q 006254 303 DRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLA 382 (653)
Q Consensus 303 ~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~A 382 (653)
+-..-++. .+..| ..+.--++++++..+..... |+ .|..-.++..|-..|
T Consensus 204 ~t~~yl~~------------------------~Le~a--~~~~~l~~~~a~~~i~~~sq--g~--P~lin~~~~~Al~~a 253 (269)
T COG3267 204 ETGLYLRH------------------------RLEGA--GLPEPLFSDDALLLIHEASQ--GI--PRLINNLATLALDAA 253 (269)
T ss_pred HHHHHHHH------------------------HHhcc--CCCcccCChhHHHHHHHHhc--cc--hHHHHHHHHHHHHHH
Confidence 44333332 22233 33334577777666654332 23 677777888888888
Q ss_pred HHcCCCCccHHHHHH
Q 006254 383 ALEGREKVNVDDLKK 397 (653)
Q Consensus 383 al~gr~~Vt~eDv~~ 397 (653)
...|+..|+...++.
T Consensus 254 ~~a~~~~v~~a~~~~ 268 (269)
T COG3267 254 YSAGEDGVSEAEIKN 268 (269)
T ss_pred HHcCCCccchhhccc
Confidence 899999999887653
No 322
>PRK05325 hypothetical protein; Provisional
Probab=97.27 E-value=0.0012 Score=71.71 Aligned_cols=99 Identities=16% Similarity=0.190 Sum_probs=60.2
Q ss_pred ecCcchhhhhhc----cCCceEEEEEeCCCCCChhHHHHHHHHHHHHHHhHcCCCCeEEEEEeecCCcEEEcCCCcCHHH
Q 006254 547 EKTDMRAKRMAR----KAGALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAM 622 (653)
Q Consensus 547 ~~~dl~~~~~~~----~~~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~ay~~rd~v~li~F~~~~a~~~lp~t~~~~~ 622 (653)
.+-|||.+.++. .+.+.++++.|+||||...+-..||-.-.-|-....++=++|-+|--..+.....+.
T Consensus 204 d~~DlRYr~~~~~~~p~s~AVmfclMDvSGSM~~~~K~lakrff~lly~fL~r~Y~~vEvvFI~H~t~AkEVd------- 276 (401)
T PRK05325 204 DPFDLRYRNWEKVPKPESQAVMFCLMDVSGSMDEAEKDLAKRFFFLLYLFLRRKYENVEVVFIRHHTEAKEVD------- 276 (401)
T ss_pred CcccccccccccccCccCcEEEEEEEeCCCCCchHHHHHHHHHHHHHHHHHHhccCceEEEEEeecCceeEcC-------
Confidence 333998876654 456778888899999986543444443322222222222555444333222222221
Q ss_pred HHHHHhcCCCCCCCchHHHHHHHHHHHhhcC
Q 006254 623 ARKRLERLPCGGGSPLAHGLSMGWAKCGEEW 653 (653)
Q Consensus 623 ~~~~L~~l~~gG~Tpl~~gl~~a~~~l~~~~ 653 (653)
...+=...-+|||-..+|+.+|.+.+.++|
T Consensus 277 -EeeFF~~~esGGT~vSSA~~l~~eIi~~rY 306 (401)
T PRK05325 277 -EEEFFYSRESGGTIVSSAYKLALEIIEERY 306 (401)
T ss_pred -HHHccccCCCCCeEehHHHHHHHHHHHhhC
Confidence 133445678999999999999999999876
No 323
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.26 E-value=0.0017 Score=68.12 Aligned_cols=57 Identities=14% Similarity=0.095 Sum_probs=45.3
Q ss_pred CceEEecccccCCHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhccccccc
Q 006254 225 RGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSAD 296 (653)
Q Consensus 225 ~giL~IDEi~~l~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~ 296 (653)
.-|++||+++.|..+.+|+||..+++-. .+.++|-.++ ....+.|.+++|+..+ .+.
T Consensus 96 ~kv~ii~~ad~mt~~AaNaLLK~LEEPp-------------~~~~fiL~~~-~~~~ll~TI~SRcq~~-~~~ 152 (290)
T PRK05917 96 YKIYIIHEADRMTLDAISAFLKVLEDPP-------------QHGVIILTSA-KPQRLPPTIRSRSLSI-HIP 152 (290)
T ss_pred ceEEEEechhhcCHHHHHHHHHHhhcCC-------------CCeEEEEEeC-ChhhCcHHHHhcceEE-Ecc
Confidence 4599999999999999999999999753 3445555555 6777889999998776 554
No 324
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.22 E-value=0.0002 Score=76.11 Aligned_cols=27 Identities=19% Similarity=0.370 Sum_probs=24.3
Q ss_pred CCceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 115 EIGGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l~ 141 (653)
...|++|+|++|||||+|+.+|++.+.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~ 181 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELA 181 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 356899999999999999999999874
No 325
>PRK13695 putative NTPase; Provisional
Probab=97.15 E-value=0.0013 Score=63.83 Aligned_cols=69 Identities=20% Similarity=0.129 Sum_probs=42.5
Q ss_pred cCceEEeccccc---CCHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCC-CCcccHHHHhhhcccccccCCC
Q 006254 224 HRGVLYIDEINL---LDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE-EGVVREHLLDRIAINLSADLPM 299 (653)
Q Consensus 224 ~~giL~IDEi~~---l~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~-eg~l~~aLldRf~~~v~l~~p~ 299 (653)
...+|+|||+.. ++....+.|..+++.+. .+|+++|.. ...+.+.+..|.+..|. . .
T Consensus 96 ~~~~lllDE~~~~e~~~~~~~~~l~~~~~~~~----------------~~i~v~h~~~~~~~~~~i~~~~~~~i~-~--~ 156 (174)
T PRK13695 96 EADVIIIDEIGKMELKSPKFVKAVEEVLDSEK----------------PVIATLHRRSVHPFVQEIKSRPGGRVY-E--L 156 (174)
T ss_pred CCCEEEEECCCcchhhhHHHHHHHHHHHhCCC----------------eEEEEECchhhHHHHHHHhccCCcEEE-E--E
Confidence 456999999654 35566777777776553 477777732 12344556666666532 2 3
Q ss_pred CHhhHHHHHHHH
Q 006254 300 TFEDRVAAVGIA 311 (653)
Q Consensus 300 ~~~~r~~I~~~~ 311 (653)
+++.|.++...+
T Consensus 157 ~~~~r~~~~~~~ 168 (174)
T PRK13695 157 TPENRDSLPFEI 168 (174)
T ss_pred cchhhhhHHHHH
Confidence 667777776544
No 326
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.13 E-value=0.0008 Score=69.23 Aligned_cols=139 Identities=13% Similarity=0.065 Sum_probs=81.3
Q ss_pred CceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeEeCCCCCcc
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTE 195 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~ 195 (653)
.+..||.|+.|+||..+|.+++..+ .|... ...|..|.......... ...|..+....
T Consensus 7 ~HA~Lf~G~~G~G~~~lA~~~A~~l-----------lC~~~--~~~Cg~C~sC~~i~~~~-------HPDl~~i~p~~-- 64 (261)
T PRK05818 7 THPLLLIERKGSFLKPFLYEYLTSI-----------VCTKA--NGFCKTCESCLKILNGK-------YNDFYLIFDQK-- 64 (261)
T ss_pred CcceeeeCCCCCcHHHHHHHHHHHH-----------cCCCC--CCCCCCCHHHHHHhcCC-------CCCEEEecCCc--
Confidence 3669999999999999999999976 35332 12454444322111110 11222221111
Q ss_pred cceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEec
Q 006254 196 DRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYN 275 (653)
Q Consensus 196 ~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattN 275 (653)
.-++.-++..-. ..+....+..+..-|++|+++++|.....|+||..+++-. .+.++|-+|+
T Consensus 65 -~~I~id~ir~l~----~~l~~~s~e~~~~KV~II~~ae~m~~~AaNaLLK~LEEPp-------------~~t~fiLit~ 126 (261)
T PRK05818 65 -NPIKKEDALSII----NKLNRPSVESNGKKIYIIYGIEKLNKQSANSLLKLIEEPP-------------KNTYGIFTTR 126 (261)
T ss_pred -ccCCHHHHHHHH----HHHccCchhcCCCEEEEeccHhhhCHHHHHHHHHhhcCCC-------------CCeEEEEEEC
Confidence 112211111100 0000001111234599999999999999999999999753 4556666666
Q ss_pred CCCCcccHHHHhhhccccccc
Q 006254 276 PEEGVVREHLLDRIAINLSAD 296 (653)
Q Consensus 276 p~eg~l~~aLldRf~~~v~l~ 296 (653)
.+..+.+-+++|+..+ .+.
T Consensus 127 -~~~~lLpTI~SRCq~~-~~~ 145 (261)
T PRK05818 127 -NENNILNTILSRCVQY-VVL 145 (261)
T ss_pred -ChHhCchHhhhheeee-ecC
Confidence 7778889999998665 453
No 327
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.11 E-value=0.0013 Score=61.53 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=22.8
Q ss_pred CceEEEECCCCCHHHHHHHHHHhhC
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAIL 140 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l 140 (653)
..+|||.|-|||||||++..|+..+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh
Confidence 4579999999999999999999876
No 328
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.11 E-value=0.00089 Score=66.63 Aligned_cols=70 Identities=14% Similarity=0.094 Sum_probs=50.4
Q ss_pred ceEEecccccCCHHHHHHHHHHHHcCceEEeeC--CeeEEeecCcEEEEEecCCCCcccHHHHhhhccccccc
Q 006254 226 GVLYIDEINLLDEGISNLLLNVLTEGVNIVERE--GISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSAD 296 (653)
Q Consensus 226 giL~IDEi~~l~~~~~~~Ll~~l~~g~~~v~r~--G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~ 296 (653)
-|+.|||++.+....++.|-..+......+.+- .....+|-.+++|||||..+---++.=-+||-.+ .+.
T Consensus 97 ~iveldEl~~~~k~~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf~~v-~v~ 168 (198)
T PF05272_consen 97 WIVELDELDGLSKKDVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRFWPV-EVS 168 (198)
T ss_pred HheeHHHHhhcchhhHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEEEEE-EEc
Confidence 588899999999888999999999888776653 2346788889999999954321122223577554 554
No 329
>PF05729 NACHT: NACHT domain
Probab=97.02 E-value=0.0021 Score=60.74 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=21.8
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-++|.|++|+|||++++.++..+.
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~ 25 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLA 25 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHH
Confidence 489999999999999999998775
No 330
>PRK14700 recombination factor protein RarA; Provisional
Probab=96.99 E-value=0.0021 Score=67.18 Aligned_cols=106 Identities=13% Similarity=0.033 Sum_probs=76.0
Q ss_pred CcEEEEEecCCCC-cccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcc
Q 006254 267 KPLLIATYNPEEG-VVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKD 345 (653)
Q Consensus 267 ~~~lIattNp~eg-~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~ 345 (653)
.++|||+|..++. ++.++|++|+.++ .+. |.+.++...+++++..... ......
T Consensus 8 ~i~LIGATTENP~f~vn~ALlSR~~v~-~l~-~L~~~di~~il~ral~~~~-----------------------~~~~~~ 62 (300)
T PRK14700 8 KIILIGATTENPTYYLNDALVSRLFIL-RLK-RLSLVATQKLIEKALSQDE-----------------------VLAKHK 62 (300)
T ss_pred cEEEEeecCCCccceecHhhhhhhhee-eec-CCCHHHHHHHHHHHHHhhh-----------------------ccCCcC
Confidence 3689999997775 7999999999777 777 7788888888876643210 000124
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHHHH
Q 006254 346 VAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVEL 401 (653)
Q Consensus 346 v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~l 401 (653)
+.++++++++|++.|. + ..|..+++++.|-..+.-.+...||.++|++++.-
T Consensus 63 ~~i~~~al~~ia~~a~---G-DaR~aLN~LE~a~~~~~~~~~~~it~~~~~~~~~~ 114 (300)
T PRK14700 63 FKIDDGLYNAMHNYNE---G-DCRKILNLLERMFLISTRGDEIYLNKELFDQAVGE 114 (300)
T ss_pred CCcCHHHHHHHHHhcC---C-HHHHHHHHHHHHHhhccccCCCccCHHHHHHHHhH
Confidence 7899999999988763 3 37999999998654321122224999999988753
No 331
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=96.96 E-value=0.0023 Score=58.93 Aligned_cols=77 Identities=17% Similarity=0.294 Sum_probs=49.6
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHHHHHhHcCCCCeEEEEEeecCCcEEEcCCCcCHHHHHHHH--hcCCCCCCCchHHH
Q 006254 564 VIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRL--ERLPCGGGSPLAHG 641 (653)
Q Consensus 564 v~~vvD~SgSM~~~r~~~ak~a~~~ll~~ay~~rd~v~li~F~~~~a~~~lp~t~~~~~~~~~L--~~l~~gG~Tpl~~g 641 (653)
++++||+||||...-+...-.-+..++.. + +.+|-||.|... ..-...... ....+ -.+..||||.+..+
T Consensus 1 i~vaiDtSGSis~~~l~~fl~ev~~i~~~-~--~~~v~vi~~D~~-v~~~~~~~~----~~~~~~~~~~~GgGGTdf~pv 72 (126)
T PF09967_consen 1 IVVAIDTSGSISDEELRRFLSEVAGILRR-F--PAEVHVIQFDAE-VQDVQVFRS----LEDELRDIKLKGGGGTDFRPV 72 (126)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHh-C--CCCEEEEEECCE-eeeeeEEec----ccccccccccCCCCCCcchHH
Confidence 57899999999875565555556666632 2 677999999632 222211112 11122 24578999999999
Q ss_pred HHHHHHH
Q 006254 642 LSMGWAK 648 (653)
Q Consensus 642 l~~a~~~ 648 (653)
++.+.+.
T Consensus 73 f~~~~~~ 79 (126)
T PF09967_consen 73 FEYLEEN 79 (126)
T ss_pred HHHHHhc
Confidence 9887654
No 332
>PF04285 DUF444: Protein of unknown function (DUF444); InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches [].
Probab=96.94 E-value=0.0048 Score=67.63 Aligned_cols=101 Identities=19% Similarity=0.303 Sum_probs=67.9
Q ss_pred cceeeecCcchhhhhhc----cCCceEEEEEeCCCCCChhHHHHHHHHH---HHHHHhHcCCCCeEEEEEeecCCcEEEc
Q 006254 542 RKVFVEKTDMRAKRMAR----KAGALVIFVVDASGSMALNRMQNAKGAA---LKLLAESYTCRDQVSIIPFRGDSAEVLL 614 (653)
Q Consensus 542 ~~~~i~~~dl~~~~~~~----~~~~~v~~vvD~SgSM~~~r~~~ak~a~---~~ll~~ay~~rd~v~li~F~~~~a~~~l 614 (653)
.++-|.++|||.+.+.. .+.+.++++.|+||||+..+-..||-.. ..+|...|. +-.|-.|... +.|.-+
T Consensus 223 ~~ipi~~~DlRyr~~~~~~~p~s~AVv~~lmDvSGSM~~~~K~lak~ff~~l~~fL~~~Y~-~Ve~vfI~H~-t~A~EV- 299 (421)
T PF04285_consen 223 ERIPIDPEDLRYRRWEEVPKPESNAVVFCLMDVSGSMGEFKKDLAKRFFFWLYLFLRRKYE-NVEIVFIRHH-TEAKEV- 299 (421)
T ss_pred cccCCCccccccccCccccCCcCcEEEEEEEeCCCCCchHHHHHHHHHHHHHHHHHHhccC-ceEEEEEeec-CceEEe-
Confidence 35669999999876654 4567777888999999875434444433 334444454 3444555554 333222
Q ss_pred CCCcCHHHHHHHHhcCCCCCCCchHHHHHHHHHHHhhcC
Q 006254 615 PPSRSIAMARKRLERLPCGGGSPLAHGLSMGWAKCGEEW 653 (653)
Q Consensus 615 p~t~~~~~~~~~L~~l~~gG~Tpl~~gl~~a~~~l~~~~ 653 (653)
. ...+=...-+|||-..+|+.++.+.+.++|
T Consensus 300 d--------Ee~FF~~~esGGT~vSSA~~l~~~ii~ery 330 (421)
T PF04285_consen 300 D--------EEEFFHSRESGGTRVSSAYELALEIIEERY 330 (421)
T ss_pred c--------HHHhcccCCCCCeEehHHHHHHHHHHHhhC
Confidence 1 234446788999999999999999999876
No 333
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.81 E-value=0.002 Score=60.37 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=21.2
Q ss_pred EEEECCCCCHHHHHHHHHHhhCC
Q 006254 119 IAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (653)
++|+|+||+|||+++..++..+.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~ 24 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIA 24 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999998875
No 334
>COG3552 CoxE Protein containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.79 E-value=0.0039 Score=66.07 Aligned_cols=110 Identities=24% Similarity=0.336 Sum_probs=71.5
Q ss_pred CCcChhHhHHhhCCcchhhhccccccccceeeecCcchhhhhhccCCceEEEEEeCCCCCCh-hHHHHHHHHHHHHHHhH
Q 006254 515 KRLAVDATLRAAAPYQKLRRERDTQKTRKVFVEKTDMRAKRMARKAGALVIFVVDASGSMAL-NRMQNAKGAALKLLAES 593 (653)
Q Consensus 515 ~~i~~~aTl~~aap~q~~r~~~~~~~~~~~~i~~~dl~~~~~~~~~~~~v~~vvD~SgSM~~-~r~~~ak~a~~~ll~~a 593 (653)
++||+.+|+|.+.- .|+. .| .+. +.+-++....++|++|+||||.. .+ ....|++-+
T Consensus 188 ~riDlRrtmR~s~~-----------tGGe-~i---~l~-~~~pr~~~~~lvvL~DVSGSm~~ys~------~~L~l~hAl 245 (395)
T COG3552 188 KRIDLRRTMRKSMS-----------TGGE-VI---LLV-RRRPRRRKPPLVVLCDVSGSMSGYSR------IFLHLLHAL 245 (395)
T ss_pred CCCCHHHHHHHHHh-----------cCCc-ee---hhh-hcCCccCCCCeEEEEecccchhhhHH------HHHHHHHHH
Confidence 47999999999761 1211 11 222 22334446789999999999964 33 456677777
Q ss_pred cCCCCeEEEEEeecC--CcEEEcCCCcCHHHHHHHHhcC--CCCCCCchHHHHHHHHH
Q 006254 594 YTCRDQVSIIPFRGD--SAEVLLPPSRSIAMARKRLERL--PCGGGSPLAHGLSMGWA 647 (653)
Q Consensus 594 y~~rd~v~li~F~~~--~a~~~lp~t~~~~~~~~~L~~l--~~gG~Tpl~~gl~~a~~ 647 (653)
.+++.++=+..|+.. +..-.|- -++.+.+.+.+..- .-+|||-++..+..-.+
T Consensus 246 ~q~~~R~~~F~F~TRLt~vT~~l~-~rD~~~Al~~~~a~v~dw~ggTrig~tl~aF~~ 302 (395)
T COG3552 246 RQQRSRVHVFLFGTRLTRVTHMLR-ERDLEDALRRLSAQVKDWDGGTRIGNTLAAFLR 302 (395)
T ss_pred HhcccceeEEEeechHHHHHHHhc-cCCHHHHHHHHHhhcccccCCcchhHHHHHHHc
Confidence 788999999999643 2222333 46777777766533 34699998888765443
No 335
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.74 E-value=0.0012 Score=66.00 Aligned_cols=36 Identities=31% Similarity=0.278 Sum_probs=24.9
Q ss_pred chHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhC
Q 006254 99 GQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAIL 140 (653)
Q Consensus 99 Gq~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l 140 (653)
+|..+..+|. ...-|.+.||.|||||++|-+.+..+
T Consensus 8 ~Q~~~~~al~------~~~~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 8 EQKFALDALL------NNDLVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp HHHHHHHHHH------H-SEEEEE--TTSSTTHHHHHHHHHH
T ss_pred HHHHHHHHHH------hCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 4555566665 23579999999999999998888643
No 336
>PHA02624 large T antigen; Provisional
Probab=96.74 E-value=0.0062 Score=69.27 Aligned_cols=28 Identities=18% Similarity=0.114 Sum_probs=25.1
Q ss_pred CCCceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 114 REIGGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 114 p~~~gVLL~GppGTGKT~lArala~~l~ 141 (653)
|...-+||+||+|||||+++.+|.+.+.
T Consensus 429 PKk~~il~~GPpnTGKTtf~~sLl~~L~ 456 (647)
T PHA02624 429 PKRRYWLFKGPVNSGKTTLAAALLDLCG 456 (647)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4555699999999999999999999995
No 337
>PF06707 DUF1194: Protein of unknown function (DUF1194); InterPro: IPR010607 This family consists of several hypothetical Rhizobiales specific proteins of around 270 residues in length. The function of this family is unknown.
Probab=96.71 E-value=0.0087 Score=59.39 Aligned_cols=91 Identities=23% Similarity=0.342 Sum_probs=60.4
Q ss_pred CceEEEEEeCCCCCChh--HHH---HHHHHHHHHHHhH----cCCCCeEEEEEeec-CCcEEEcCCCc-----CHHHHHH
Q 006254 561 GALVIFVVDASGSMALN--RMQ---NAKGAALKLLAES----YTCRDQVSIIPFRG-DSAEVLLPPSR-----SIAMARK 625 (653)
Q Consensus 561 ~~~v~~vvD~SgSM~~~--r~~---~ak~a~~~ll~~a----y~~rd~v~li~F~~-~~a~~~lp~t~-----~~~~~~~ 625 (653)
...++|.||.||||... +|+ .|...-..-+..+ ...+-.|+++.|+| ....+++|+|. +...+..
T Consensus 3 dlaLvLavDvS~SVD~~E~~lQ~~G~A~Al~dp~V~~Ai~~g~~g~Iav~~~eWsg~~~q~~~v~Wt~i~~~~da~a~A~ 82 (205)
T PF06707_consen 3 DLALVLAVDVSGSVDADEYRLQREGYAAALRDPEVIAAILSGPIGRIAVAVVEWSGPGRQRVVVPWTRIDSPADAEAFAA 82 (205)
T ss_pred cceeeeeeeccCCCCHHHHHHHHHHHHHHHCCHHHHHHHhcCCCCeEEEEEEEecCCCCceEEeCCEEeCCHHHHHHHHH
Confidence 35689999999999652 322 3322221212222 23567777888876 46778899985 4444556
Q ss_pred HHhcCC--CCCCCchHHHHHHHHHHHhh
Q 006254 626 RLERLP--CGGGSPLAHGLSMGWAKCGE 651 (653)
Q Consensus 626 ~L~~l~--~gG~Tpl~~gl~~a~~~l~~ 651 (653)
.|...+ .++.|.++.||..+..+|.+
T Consensus 83 ~l~~~~r~~~~~Taig~Al~~a~~ll~~ 110 (205)
T PF06707_consen 83 RLRAAPRRFGGRTAIGSALDFAAALLAQ 110 (205)
T ss_pred HHHhCCCCCCCCchHHHHHHHHHHHHHh
Confidence 676653 45669999999999999875
No 338
>PRK04296 thymidine kinase; Provisional
Probab=96.69 E-value=0.0035 Score=61.86 Aligned_cols=23 Identities=13% Similarity=-0.090 Sum_probs=20.1
Q ss_pred EEEECCCCCHHHHHHHHHHhhCC
Q 006254 119 IAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (653)
+|++||+|+||||++..++..+.
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~ 27 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYE 27 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHH
Confidence 78999999999999988887653
No 339
>KOG2353 consensus L-type voltage-dependent Ca2+ channel, alpha2/delta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.67 E-value=0.0057 Score=74.13 Aligned_cols=92 Identities=21% Similarity=0.337 Sum_probs=78.2
Q ss_pred ccCCceEEEEEeCCCCCChhHHHHHHHHHHHHHHhHcCCCCeEEEEEeecCCcEE--------EcCCC-cCHHHHHHHHh
Q 006254 558 RKAGALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEV--------LLPPS-RSIAMARKRLE 628 (653)
Q Consensus 558 ~~~~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~ay~~rd~v~li~F~~~~a~~--------~lp~t-~~~~~~~~~L~ 628 (653)
.-++-.++|++|.||||.+.||..+|..+..+| +.+...|-|-+++|... +.. +++.| ++.+.+...++
T Consensus 222 At~pKdiviLlD~SgSm~g~~~~lak~tv~~iL-dtLs~~Dfvni~tf~~~-~~~v~pc~~~~lvqAt~~nk~~~~~~i~ 299 (1104)
T KOG2353|consen 222 ATSPKDIVILLDVSGSMSGLRLDLAKQTVNEIL-DTLSDNDFVNILTFNSE-VNPVSPCFNGTLVQATMRNKKVFKEAIE 299 (1104)
T ss_pred cCCccceEEEEeccccccchhhHHHHHHHHHHH-HhcccCCeEEEEeeccc-cCcccccccCceeecchHHHHHHHHHHh
Confidence 345789999999999999999999999999998 66799999999999643 222 34555 47788889999
Q ss_pred cCCCCCCCchHHHHHHHHHHHhh
Q 006254 629 RLPCGGGSPLAHGLSMGWAKCGE 651 (653)
Q Consensus 629 ~l~~gG~Tpl~~gl~~a~~~l~~ 651 (653)
.+.+-|-|++..|+..|..+|.+
T Consensus 300 ~l~~k~~a~~~~~~e~aF~lL~~ 322 (1104)
T KOG2353|consen 300 TLDAKGIANYTAALEYAFSLLRD 322 (1104)
T ss_pred hhccccccchhhhHHHHHHHHHH
Confidence 99999999999999999998863
No 340
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=96.62 E-value=0.02 Score=60.77 Aligned_cols=70 Identities=11% Similarity=-0.010 Sum_probs=43.7
Q ss_pred ceEEecccccCCHHHHHHHHHHHHcCceEEeeCCe-eEEeecCcEEEEEecCCCC--cccHHHHhhhccccccc
Q 006254 226 GVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGI-SFKHPCKPLLIATYNPEEG--VVREHLLDRIAINLSAD 296 (653)
Q Consensus 226 giL~IDEi~~l~~~~~~~Ll~~l~~g~~~v~r~G~-s~~~p~~~~lIattNp~eg--~l~~aLldRf~~~v~l~ 296 (653)
-+++.||+..-...-.+.|-.+.....+.+++-+. .+.....+.+|.++|..+. .-+.++.+|+-++ .+.
T Consensus 130 ~l~~~~E~~~~~~~~~~~lK~lt~gd~i~~~~k~k~~~~~~~~~~~i~~tN~~P~~~~~~~a~~RR~~vi-~f~ 202 (304)
T TIGR01613 130 RAVIGDEVQKGYRDDESTFKSLTGGDTITARFKNKDPFEFTPKFTLVQSTNHLPRIRGFDGGIKRRLRII-PFT 202 (304)
T ss_pred EEEEecCCCCCccccHHhhhhhhcCCeEEeecccCCcEEEEEeeEEEEEcCCCCccCCCChhheeeEEEE-ecc
Confidence 47889999743222235555555556666666554 3445556788899995443 3567899998543 443
No 341
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.51 E-value=0.01 Score=59.01 Aligned_cols=25 Identities=16% Similarity=0.363 Sum_probs=22.8
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
|-|+|.||+|+||||+++++...++
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5699999999999999999988875
No 342
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.46 E-value=0.026 Score=59.83 Aligned_cols=66 Identities=17% Similarity=0.247 Sum_probs=49.6
Q ss_pred cCceEEecccccCCHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhh
Q 006254 224 HRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFED 303 (653)
Q Consensus 224 ~~giL~IDEi~~l~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~ 303 (653)
..-|++||+++.+....+++||..+++- |...++|.+++ ....+-+.+.+|+..+ .+. |.+.++
T Consensus 90 ~~KvvII~~~e~m~~~a~NaLLK~LEEP-------------p~~t~~il~~~-~~~kll~TI~SRc~~~-~f~-~l~~~~ 153 (299)
T PRK07132 90 QKKILIIKNIEKTSNSLLNALLKTIEEP-------------PKDTYFLLTTK-NINKVLPTIVSRCQVF-NVK-EPDQQK 153 (299)
T ss_pred CceEEEEecccccCHHHHHHHHHHhhCC-------------CCCeEEEEEeC-ChHhChHHHHhCeEEE-ECC-CCCHHH
Confidence 4569999999999999999999999974 33455555555 4467888999998776 776 445554
Q ss_pred HH
Q 006254 304 RV 305 (653)
Q Consensus 304 r~ 305 (653)
..
T Consensus 154 l~ 155 (299)
T PRK07132 154 IL 155 (299)
T ss_pred HH
Confidence 33
No 343
>PHA02774 E1; Provisional
Probab=96.42 E-value=0.01 Score=67.37 Aligned_cols=28 Identities=21% Similarity=0.268 Sum_probs=24.8
Q ss_pred CCCceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 114 REIGGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 114 p~~~gVLL~GppGTGKT~lArala~~l~ 141 (653)
|....++|+||||||||++|-+|.+.+.
T Consensus 432 PKknciv~~GPP~TGKS~fa~sL~~~L~ 459 (613)
T PHA02774 432 PKKNCLVIYGPPDTGKSMFCMSLIKFLK 459 (613)
T ss_pred CcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4456799999999999999999999874
No 344
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.41 E-value=0.0062 Score=72.14 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=22.9
Q ss_pred CceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.+-++|.|+||||||+++++|...+.
T Consensus 338 ~~~~iitGgpGTGKTt~l~~i~~~~~ 363 (720)
T TIGR01448 338 HKVVILTGGPGTGKTTITRAIIELAE 363 (720)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34699999999999999999988764
No 345
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.39 E-value=0.0019 Score=58.27 Aligned_cols=23 Identities=39% Similarity=0.549 Sum_probs=21.4
Q ss_pred EEEECCCCCHHHHHHHHHHhhCC
Q 006254 119 IAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (653)
|+|.|+||+||||+|+.|++.+.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 78999999999999999999864
No 346
>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex. This domain is often found associated with the C2H2 type Zn-finger (IPR007087 from INTERPRO).; GO: 0008270 zinc ion binding, 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent
Probab=96.37 E-value=0.011 Score=58.45 Aligned_cols=85 Identities=27% Similarity=0.297 Sum_probs=73.5
Q ss_pred EEeCCCCCCh-----hHHHHHHHHHHHHHHhHcCCC--CeEEEEEeecCCcEEEcCCCcCHHHHHHHHhcC---CCCCCC
Q 006254 567 VVDASGSMAL-----NRMQNAKGAALKLLAESYTCR--DQVSIIPFRGDSAEVLLPPSRSIAMARKRLERL---PCGGGS 636 (653)
Q Consensus 567 vvD~SgSM~~-----~r~~~ak~a~~~ll~~ay~~r--d~v~li~F~~~~a~~~lp~t~~~~~~~~~L~~l---~~gG~T 636 (653)
|||.|-+|.- +|+..+..++..|+.+-|.++ -++|+|+.++..++.+.+.+.+.....+.|..+ .++|.-
T Consensus 1 viD~S~~m~~~D~~PtRl~~~~~~l~~Fv~eff~qNPiSqlgii~~~~~~a~~ls~lsgn~~~h~~~L~~~~~~~~~G~~ 80 (193)
T PF04056_consen 1 VIDMSEAMREKDLKPTRLQCVLKALEEFVREFFDQNPISQLGIIVMRDGRAERLSELSGNPQEHIEALKKLRKLEPSGEP 80 (193)
T ss_pred CeechHhHHhCcCCccHHHHHHHHHHHHHHHHHhcCChhheeeeeeecceeEEeeecCCCHHHHHHHHHHhccCCCCCCh
Confidence 6899999953 799999999999998776654 689999999889999999999988877777655 689999
Q ss_pred chHHHHHHHHHHHhh
Q 006254 637 PLAHGLSMGWAKCGE 651 (653)
Q Consensus 637 pl~~gl~~a~~~l~~ 651 (653)
.|..||+.|...|..
T Consensus 81 SLqN~Le~A~~~L~~ 95 (193)
T PF04056_consen 81 SLQNGLEMARSSLKH 95 (193)
T ss_pred hHHHHHHHHHHHHhh
Confidence 999999999998863
No 347
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.33 E-value=0.0089 Score=69.28 Aligned_cols=48 Identities=21% Similarity=0.377 Sum_probs=35.4
Q ss_pred ceEEecccccCCHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecC----CCCcccHHHHh
Q 006254 226 GVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP----EEGVVREHLLD 287 (653)
Q Consensus 226 giL~IDEi~~l~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp----~eg~l~~aLld 287 (653)
.+|+|||..-++-.+...|+.++..+. +++|||=.+. +.|.+-.+|..
T Consensus 267 dvlIvDEaSMvd~~lm~~ll~al~~~~--------------rlIlvGD~~QL~sV~~G~VL~DL~~ 318 (615)
T PRK10875 267 DVLVVDEASMVDLPMMARLIDALPPHA--------------RVIFLGDRDQLASVEAGAVLGDICR 318 (615)
T ss_pred CeEEEChHhcccHHHHHHHHHhcccCC--------------EEEEecchhhcCCCCCCchHHHHHH
Confidence 599999999999999999999886553 5677776553 33554455543
No 348
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.27 E-value=0.011 Score=68.18 Aligned_cols=49 Identities=31% Similarity=0.418 Sum_probs=34.4
Q ss_pred CceEEecccccCCHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecC----CCCcccHHHHh
Q 006254 225 RGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP----EEGVVREHLLD 287 (653)
Q Consensus 225 ~giL~IDEi~~l~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp----~eg~l~~aLld 287 (653)
-.+|+|||+.-++..+...|+.++..+. +++++|=.+. +.|.+-.+|..
T Consensus 260 ~dvlIiDEaSMvd~~l~~~ll~al~~~~--------------rlIlvGD~~QLpsV~~G~vl~dl~~ 312 (586)
T TIGR01447 260 LDVLVVDEASMVDLPLMAKLLKALPPNT--------------KLILLGDKNQLPSVEAGAVLGDLCE 312 (586)
T ss_pred ccEEEEcccccCCHHHHHHHHHhcCCCC--------------EEEEECChhhCCCCCCChhHHHHHH
Confidence 3599999999999999999999876543 5667775442 23444445544
No 349
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=96.24 E-value=0.0052 Score=63.85 Aligned_cols=59 Identities=22% Similarity=0.397 Sum_probs=42.0
Q ss_pred cccccccCceEEecccccCCHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCccc
Q 006254 218 GLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVR 282 (653)
Q Consensus 218 Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~ 282 (653)
|-+...++.++++||+++|++.+.+.|-..++--. ...|..+. +.++|.-+|-...++.
T Consensus 172 ~~v~~C~rslFIFDE~DKmp~gLld~lkpfLdyyp---~v~gv~fr---kaIFIfLSN~gg~eI~ 230 (344)
T KOG2170|consen 172 GTVQACQRSLFIFDEVDKLPPGLLDVLKPFLDYYP---QVSGVDFR---KAIFIFLSNAGGSEIA 230 (344)
T ss_pred HHHHhcCCceEEechhhhcCHhHHHHHhhhhcccc---cccccccc---ceEEEEEcCCcchHHH
Confidence 44556678999999999999999999999998422 22233332 4578888885444443
No 350
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.24 E-value=0.003 Score=58.54 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=21.6
Q ss_pred EEEECCCCCHHHHHHHHHHhhCC
Q 006254 119 IAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (653)
|++.|+||+||||+|+.++..++
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 78999999999999999998876
No 351
>COG4930 Predicted ATP-dependent Lon-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.016 Score=62.16 Aligned_cols=171 Identities=18% Similarity=0.188 Sum_probs=106.9
Q ss_pred CCccccccccccccCceEEecccccC---CHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCC-CC-------
Q 006254 211 GTTVFQPGLLAEAHRGVLYIDEINLL---DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE-EG------- 279 (653)
Q Consensus 211 g~~~~~~Gll~~A~~giL~IDEi~~l---~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~-eg------- 279 (653)
.-..-++|++..- .++.+||+... +++....|-+.|++|. ++|...++...+..+++|--|.. |+
T Consensus 265 NmatrqiGlvg~w--DvVaFDEVagirFkdkDg~qilKDYMaSGs--f~RG~~~v~~~ASlVFvGNvnqs~E~lvktshL 340 (683)
T COG4930 265 NMATRQIGLVGLW--DVVAFDEVAGIRFKDKDGMQILKDYMASGS--FERGDKKVVSDASLVFVGNVNQSSEGLVKTSHL 340 (683)
T ss_pred HHhhccccceeee--eeeeehhhccccccCccHHHHHHHHHhcCC--cccccccccccceEEEEecccccccceeehhhc
Confidence 3334456666443 38899999765 5668899999999998 88877777777778888877742 21
Q ss_pred -------cccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHH
Q 006254 280 -------VVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQ 352 (653)
Q Consensus 280 -------~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~ 352 (653)
-.+.++.|||.-.+ + -++ |.+.. |.-|..+|-...+-+++.+...|+. .+++ .
T Consensus 341 ~~pfPeaM~DtAFfDR~H~yi--P---GWE----iPK~r------pehft~rYG~isDY~AE~~reMRKr----S~sd-~ 400 (683)
T COG4930 341 TYPFPEAMRDTAFFDRIHGYI--P---GWE----IPKIR------PEHFTKRYGVISDYFAEALREMRKR----SLSD-L 400 (683)
T ss_pred cccCchhhhhhHHHHHHhccC--c---ccc----CccCC------HHHhccccchHHHHHHHHHHHHHHH----HHHH-H
Confidence 13457888886552 2 222 22211 1223333443333344444433322 2333 3
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHHH-HcCCCCccHHHHHHHHHHHcCCCcc
Q 006254 353 LKYLVMEALRGGCQGHRAELYAARVAKCLAA-LEGREKVNVDDLKKAVELVILPRSI 408 (653)
Q Consensus 353 l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aa-l~gr~~Vt~eDv~~A~~lvl~hR~~ 408 (653)
+....++...+ ..|..+..-|+-..+-. |.-....+.++++..++++|--|++
T Consensus 401 i~rf~kLgnNl---nqRDviavkrt~SGLlKLL~Pd~t~~kee~k~ileyAle~RrR 454 (683)
T COG4930 401 IGRFVKLGNNL---NQRDVIAVKRTTSGLLKLLFPDKTFDKEELKTILEYALELRRR 454 (683)
T ss_pred HHHHHHhcccc---chhhhHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 45555554444 45777777766655554 4567799999999999999998876
No 352
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.19 E-value=0.0052 Score=60.61 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=22.1
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
=|+|.|+||+||||+|+-|++.|.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHH
Confidence 378999999999999999999984
No 353
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.18 E-value=0.0045 Score=59.76 Aligned_cols=59 Identities=20% Similarity=0.163 Sum_probs=36.1
Q ss_pred eechHHHHHHHHHhc--ccC-CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCC
Q 006254 97 VVGQDAIKTALLLGA--IDR-EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT 156 (653)
Q Consensus 97 IvGq~~~k~aL~~~a--v~p-~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~ 156 (653)
++|.++..+.|.-.+ ... ....++|.|++|+|||++.+.+...+...... .+.++|++.
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~-~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGY-VISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT---EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCE-EEEEEEecc
Confidence 689998888884433 222 34559999999999999999988877543222 455666655
No 354
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.18 E-value=0.027 Score=56.46 Aligned_cols=24 Identities=38% Similarity=0.487 Sum_probs=22.3
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
=|.|.|++|+||||+|+.|+..++
T Consensus 10 iIgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 10 IIGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999999987
No 355
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.14 E-value=0.077 Score=52.88 Aligned_cols=25 Identities=32% Similarity=0.312 Sum_probs=22.6
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.-|.|.|++|+|||||++.|+..++
T Consensus 7 ~iI~I~G~sGsGKTTl~~~l~~~l~ 31 (209)
T PRK05480 7 IIIGIAGGSGSGKTTVASTIYEELG 31 (209)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3589999999999999999999874
No 356
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.10 E-value=0.022 Score=61.56 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=24.0
Q ss_pred CCceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 115 EIGGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l~ 141 (653)
..+-|+|.||+|+||||+.+++...++
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 357799999999999999999998775
No 357
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.06 E-value=0.0093 Score=70.91 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=21.9
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
+-++|.|++|||||++++++...+.
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~ 393 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWE 393 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHH
Confidence 4589999999999999999987653
No 358
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.05 E-value=0.016 Score=63.27 Aligned_cols=42 Identities=17% Similarity=0.235 Sum_probs=30.3
Q ss_pred hHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 100 QDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 100 q~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~ 141 (653)
|..+...++-+........++|.|+.|||||++.++|...+.
T Consensus 6 Q~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~ 47 (364)
T PF05970_consen 6 QRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLR 47 (364)
T ss_pred HHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhc
Confidence 334444443333334556799999999999999999999875
No 359
>PRK08118 topology modulation protein; Reviewed
Probab=96.04 E-value=0.0056 Score=59.21 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=22.2
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
.|+|.|++|+||||+|+.|++.+.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999874
No 360
>PF13148 DUF3987: Protein of unknown function (DUF3987)
Probab=96.04 E-value=0.023 Score=61.93 Aligned_cols=172 Identities=16% Similarity=0.098 Sum_probs=94.7
Q ss_pred CceEEecccccC----CH----HHHHHHHHHHHcCceEEeeCCee-EEe-ecCcEEEEEecCCCC-----------cccH
Q 006254 225 RGVLYIDEINLL----DE----GISNLLLNVLTEGVNIVEREGIS-FKH-PCKPLLIATYNPEEG-----------VVRE 283 (653)
Q Consensus 225 ~giL~IDEi~~l----~~----~~~~~Ll~~l~~g~~~v~r~G~s-~~~-p~~~~lIattNp~eg-----------~l~~ 283 (653)
+..+|.||+..+ .. .....|+.+-+.+.+.+.|.+.. ..+ ...+.|++++.|..- ....
T Consensus 150 ~~l~~~dE~~~~~~~~~~~~~~~~~~~ll~~~dg~~~~~~R~~~~~~~i~~~~lsi~~~~QP~~l~~~~~~~~~~~~~~~ 229 (378)
T PF13148_consen 150 GLLLFSDEGGGLLNSMGRYGGGSDRDLLLKAWDGEPYSIDRKSRGSIYIENPRLSILGGIQPDVLKREILSAEDPEFRGD 229 (378)
T ss_pred eEEEEchhHHHHHHHhhcccCCccHHHHHHHhCCCCeeeeeccCCcccCCCceEEEEeccChHHHHHHHhhhhcccccCC
Confidence 346779999754 22 44678888888888777776543 333 346778888887321 1334
Q ss_pred HHHhhhcccccccCCCCHhhHHHHHHHHHHHHhh---hhHHhhhhhhhhhHHHHHHH-HHHhhhcccCCCHHHHHHHHHH
Q 006254 284 HLLDRIAINLSADLPMTFEDRVAAVGIATQFQER---SNEVFKMVEEETDLAKTQII-LAREYLKDVAIGREQLKYLVME 359 (653)
Q Consensus 284 aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~---~~~~~~~~~~~~~~l~~~i~-~ar~~l~~v~is~~~l~~l~~~ 359 (653)
-|+.||-++ ++.+ ....+. .+... .......|......+..... ........+.+++++.+++.++
T Consensus 230 Gll~RfL~~--~p~~-~~~~~~-------~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~ls~eA~~~~~~~ 299 (378)
T PF13148_consen 230 GLLARFLFV--IPDS-RKGRRF-------EFPVPEPIDDEALEAYHERIKELLDWPPEDGSDEPIVLELSDEAKELFREW 299 (378)
T ss_pred ChHhheeee--ccCc-cccccc-------ccCCCCcccHHHHHHHHHHHHHHHhhhhcccCCCCeEEecCHHHHHHHHHH
Confidence 788999743 2211 111110 00000 00000111110011110000 0011234478888888877765
Q ss_pred HHhc-------CCC------CcchHHHHHHHHHHHHHHc-----CCCCccHHHHHHHHHHHcCCC
Q 006254 360 ALRG-------GCQ------GHRAELYAARVAKCLAALE-----GREKVNVDDLKKAVELVILPR 406 (653)
Q Consensus 360 ~~~~-------~i~------s~R~~i~llr~Ara~Aal~-----gr~~Vt~eDv~~A~~lvl~hR 406 (653)
.... +.. -.|....++|+|--++.++ ....|+.+++..|+.++-.+.
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~K~~~~~~RlA~ilh~~~~~~~~~~~~I~~~~~~~Ai~l~~~~~ 364 (378)
T PF13148_consen 300 YNELENELRQPGGDLAMRSFASKAAEQALRLALILHLFESGGSPPSTEISAETMERAIRLVEYFL 364 (378)
T ss_pred HHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCEECHHHHHHHHHHHHHHH
Confidence 4321 111 1255567889999999999 788999999999999886543
No 361
>COG1485 Predicted ATPase [General function prediction only]
Probab=95.98 E-value=0.0091 Score=63.48 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=25.0
Q ss_pred CCceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 115 EIGGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l~ 141 (653)
...|+.|+|+-|.|||+|.-.+...+|
T Consensus 64 ~~~GlYl~GgVGrGKT~LMD~Fy~~lp 90 (367)
T COG1485 64 PVRGLYLWGGVGRGKTMLMDLFYESLP 90 (367)
T ss_pred CCceEEEECCCCccHHHHHHHHHhhCC
Confidence 458999999999999999999999987
No 362
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.014 Score=69.37 Aligned_cols=155 Identities=21% Similarity=0.352 Sum_probs=90.3
Q ss_pred CCceech--HHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccccc
Q 006254 94 LAAVVGQ--DAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEY 171 (653)
Q Consensus 94 f~~IvGq--~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~ 171 (653)
++-++|. +++++.+.+ +......+-+|.|+||+|||.++..+++.+-.
T Consensus 185 ldPvigr~deeirRvi~i-L~Rrtk~NPvLVG~~gvgktaiv~gla~ri~~----------------------------- 234 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEI-LSRKTKNNPVLVGEPGVGKTAIVEGLAQRIAT----------------------------- 234 (898)
T ss_pred CCCccCCchHHHHHHHHH-HhccCCCCceEEecCCCCchhHHHHHHHHhhc-----------------------------
Confidence 5667785 677777755 33334467889999999999999999997642
Q ss_pred cccccccccccCCCeEeCCCCC--cccceeeecchhhhhccCCcccccccccc---ccCc-eEEecccccCCH-------
Q 006254 172 DTAGNLKTQIARSPFVQIPLGV--TEDRLIGSVDVEESVKTGTTVFQPGLLAE---AHRG-VLYIDEINLLDE------- 238 (653)
Q Consensus 172 ~~~~~~~~~~~~~~fv~l~~~~--~~~~l~G~~d~~~~~~~g~~~~~~Gll~~---A~~g-iL~IDEi~~l~~------- 238 (653)
+..+.......++.+..+. .-...-|. ++.-+ .+++.+ +.+| ||||||++.+-.
T Consensus 235 ---G~vp~~l~~~~l~~l~~g~l~aGa~~rge--~E~rl--------k~l~k~v~~~~~gvILfigelh~lvg~g~~~~~ 301 (898)
T KOG1051|consen 235 ---GDVPETLKDKKLIALDFGSLVAGAKRRGE--FEERL--------KELLKEVESGGGGVILFLGELHWLVGSGSNYGA 301 (898)
T ss_pred ---CCCCccccccceEEEEhhhcccCcccchH--HHHHH--------HHHHHHHhcCCCcEEEEecceeeeecCCCcchH
Confidence 1122212234444444332 11111111 11111 123322 2233 889999998732
Q ss_pred -HHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCC----cccHHHHhhhcccccccCCCCHhhHHHHH
Q 006254 239 -GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG----VVREHLLDRIAINLSADLPMTFEDRVAAV 308 (653)
Q Consensus 239 -~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg----~l~~aLldRf~~~v~l~~p~~~~~r~~I~ 308 (653)
+..+.|-..+..|. +.+||||..++. +-+|+|-.||.++ .|..| ..+.-.-|+
T Consensus 302 ~d~~nlLkp~L~rg~---------------l~~IGatT~e~Y~k~iekdPalErrw~l~-~v~~p-S~~~~~~iL 359 (898)
T KOG1051|consen 302 IDAANLLKPLLARGG---------------LWCIGATTLETYRKCIEKDPALERRWQLV-LVPIP-SVENLSLIL 359 (898)
T ss_pred HHHHHhhHHHHhcCC---------------eEEEecccHHHHHHHHhhCcchhhCccee-EeccC-cccchhhhh
Confidence 45566666666553 578898875543 3568999999998 66655 443333343
No 363
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.94 E-value=0.027 Score=58.68 Aligned_cols=48 Identities=17% Similarity=0.131 Sum_probs=31.2
Q ss_pred CCCceechHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 93 PLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 93 ~f~~IvGq~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~ 141 (653)
++.++--.......|.. ++....+.|+|.|++|+||||+.+++...++
T Consensus 58 ~l~~lg~~~~~~~~l~~-~~~~~~GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 58 DLEKLGLKPENLEIFRK-LLEKPHGIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred CHHHcCCCHHHHHHHHH-HHhcCCCEEEEECCCCCcHHHHHHHHHhhhC
Confidence 34444222333444433 3333456699999999999999999987775
No 364
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=95.89 E-value=0.0059 Score=69.67 Aligned_cols=27 Identities=30% Similarity=0.491 Sum_probs=24.8
Q ss_pred CCceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 115 EIGGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l~ 141 (653)
....+||.||+|||||++.|+|+.+.|
T Consensus 418 ~G~~llI~G~SG~GKTsLlRaiaGLWP 444 (604)
T COG4178 418 PGERLLITGESGAGKTSLLRALAGLWP 444 (604)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCc
Confidence 356699999999999999999999988
No 365
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.82 E-value=0.026 Score=59.60 Aligned_cols=93 Identities=13% Similarity=0.161 Sum_probs=50.6
Q ss_pred eEE-ecccccCCH-HHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCC--CcccHHHHhhhccc-ccccCCCCH
Q 006254 227 VLY-IDEINLLDE-GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE--GVVREHLLDRIAIN-LSADLPMTF 301 (653)
Q Consensus 227 iL~-IDEi~~l~~-~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e--g~l~~aLldRf~~~-v~l~~p~~~ 301 (653)
|+| +||+|.+-+ .-|..|....+.-. +. .+.+++||.|.... ..|-.-..+||.-+ |.+..+...
T Consensus 139 ViFIldEfDlf~~h~rQtllYnlfDisq--------s~--r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l 208 (408)
T KOG2228|consen 139 VIFILDEFDLFAPHSRQTLLYNLFDISQ--------SA--RAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPL 208 (408)
T ss_pred EEEEeehhhccccchhhHHHHHHHHHHh--------hc--CCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCCh
Confidence 555 779998754 44555555555322 11 23467888777543 23445677899887 444444445
Q ss_pred hhHHHHHHHHHHHHhhhhHHhhhhhhhh
Q 006254 302 EDRVAAVGIATQFQERSNEVFKMVEEET 329 (653)
Q Consensus 302 ~~r~~I~~~~~~~~~~~~~~~~~~~~~~ 329 (653)
++-+++.+-.+........+.++|....
T Consensus 209 ~~yv~l~r~ll~v~~e~~~~~~~wn~~~ 236 (408)
T KOG2228|consen 209 GDYVDLYRKLLSVPAEFSDFAEKWNRSV 236 (408)
T ss_pred HHHHHHHHHHhcCCccCccHHHHHHhhh
Confidence 5556665544433222222555665433
No 366
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.81 E-value=0.0052 Score=55.51 Aligned_cols=22 Identities=45% Similarity=0.605 Sum_probs=20.9
Q ss_pred EEEECCCCCHHHHHHHHHHhhC
Q 006254 119 IAISGRRGTAKTVMARGLHAIL 140 (653)
Q Consensus 119 VLL~GppGTGKT~lArala~~l 140 (653)
|+|.|.+|+||||+|+.|+..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999986
No 367
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.81 E-value=0.014 Score=56.22 Aligned_cols=23 Identities=39% Similarity=0.443 Sum_probs=20.2
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-++|.|.|||||||+++.|. .+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg 24 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELG 24 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhC
Confidence 37899999999999999999 553
No 368
>PTZ00301 uridine kinase; Provisional
Probab=95.80 E-value=0.064 Score=53.92 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=20.2
Q ss_pred EEEECCCCCHHHHHHHHHHhhC
Q 006254 119 IAISGRRGTAKTVMARGLHAIL 140 (653)
Q Consensus 119 VLL~GppGTGKT~lArala~~l 140 (653)
|.|.|++|+||||+|+.|++.+
T Consensus 6 IgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 6 IGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred EEEECCCcCCHHHHHHHHHHHH
Confidence 7899999999999999998765
No 369
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.76 E-value=0.015 Score=60.52 Aligned_cols=52 Identities=33% Similarity=0.505 Sum_probs=34.8
Q ss_pred CCCCCCceechHHHH---HHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCC
Q 006254 90 QFFPLAAVVGQDAIK---TALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPP 142 (653)
Q Consensus 90 ~~~~f~~IvGq~~~k---~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~ 142 (653)
..+++.++.-..... ..++..++ ...+.|+|.|++|+||||+.+++...+++
T Consensus 99 ~~~sle~l~~~~~~~~~~~~~l~~~v-~~~~~ili~G~tGSGKTT~l~all~~i~~ 153 (270)
T PF00437_consen 99 KPFSLEDLGESGSIPEEIAEFLRSAV-RGRGNILISGPTGSGKTTLLNALLEEIPP 153 (270)
T ss_dssp S--CHCCCCHTHHCHHHHHHHHHHCH-HTTEEEEEEESTTSSHHHHHHHHHHHCHT
T ss_pred ccccHhhccCchhhHHHHHHHHhhcc-ccceEEEEECCCccccchHHHHHhhhccc
Confidence 355667765544322 22222222 24678999999999999999999999874
No 370
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=0.11 Score=58.83 Aligned_cols=71 Identities=20% Similarity=0.296 Sum_probs=46.3
Q ss_pred ceEEecccccCCH-----------HHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHh--hhccc
Q 006254 226 GVLYIDEINLLDE-----------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAIN 292 (653)
Q Consensus 226 giL~IDEi~~l~~-----------~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLld--Rf~~~ 292 (653)
+++++||++.+.+ .+...|+..++... ... +++++.+| ....++++++. ||...
T Consensus 78 ~ii~~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~-----------~~~-v~~~~~~~-~~~~~~~a~~~~~~~~~~ 144 (494)
T COG0464 78 SIIFIDEIDALAPKRSSDQGEVERRVVAQLLALMDGLK-----------RGQ-VIVIGATN-RPDGLDPAKRRPGRFDRE 144 (494)
T ss_pred CeEeechhhhcccCccccccchhhHHHHHHHHhccccc-----------CCc-eEEEeecC-CccccChhHhCcccccee
Confidence 7999999987633 34566666665432 122 67778777 55556666554 88888
Q ss_pred ccccCCCCHhhHHHHHHH
Q 006254 293 LSADLPMTFEDRVAAVGI 310 (653)
Q Consensus 293 v~l~~p~~~~~r~~I~~~ 310 (653)
+.+..| +...+.+|...
T Consensus 145 ~~~~~~-~~~~~~ei~~~ 161 (494)
T COG0464 145 IEVNLP-DEAGRLEILQI 161 (494)
T ss_pred eecCCC-CHHHHHHHHHH
Confidence 888764 66656666553
No 371
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=95.75 E-value=0.071 Score=52.79 Aligned_cols=85 Identities=21% Similarity=0.190 Sum_probs=51.3
Q ss_pred ceEEEEEeCCCCCCh----hHHHHHHHHHHHHHHhHcCCCCeEEEEEeecCCcEEEcCCCcCHHHHHHHHhcC-------
Q 006254 562 ALVIFVVDASGSMAL----NRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERL------- 630 (653)
Q Consensus 562 ~~v~~vvD~SgSM~~----~r~~~ak~a~~~ll~~ay~~rd~v~li~F~~~~a~~~lp~t~~~~~~~~~L~~l------- 630 (653)
+.|+||+|.||||.. .+.+.+.+=+..|.. .+-..-.|-++.|++. ..-+=+.| .......++.+
T Consensus 2 ArV~LVLD~SGSM~~~yk~G~vQ~~~Er~lalA~-~~DdDG~i~v~~Fs~~-~~~~~~vt--~~~~~~~v~~~~~~~~~~ 77 (200)
T PF10138_consen 2 ARVYLVLDISGSMRPLYKDGTVQRVVERILALAA-QFDDDGEIDVWFFSTE-FDRLPDVT--LDNYEGYVDELHAGLPDW 77 (200)
T ss_pred cEEEEEEeCCCCCchhhhCccHHHHHHHHHHHHh-hcCCCCceEEEEeCCC-CCcCCCcC--HHHHHHHHHHHhcccccc
Confidence 468999999999965 244444444444432 2344555999999754 33322223 33333333333
Q ss_pred CCCCCCchHHHHHHHHHHHh
Q 006254 631 PCGGGSPLAHGLSMGWAKCG 650 (653)
Q Consensus 631 ~~gG~Tpl~~gl~~a~~~l~ 650 (653)
...|+|..+.+|+.+.....
T Consensus 78 ~~~G~t~y~~vm~~v~~~y~ 97 (200)
T PF10138_consen 78 GRMGGTNYAPVMEDVLDHYF 97 (200)
T ss_pred CCCCCcchHHHHHHHHHHHh
Confidence 44488999999998877654
No 372
>PRK03839 putative kinase; Provisional
Probab=95.72 E-value=0.0091 Score=58.08 Aligned_cols=24 Identities=38% Similarity=0.421 Sum_probs=21.9
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
.|+|.|+||+||||+++.|++.+.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999873
No 373
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=95.69 E-value=0.035 Score=55.82 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=23.8
Q ss_pred CCceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 115 EIGGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l~ 141 (653)
+.-+.||.||||+||||+.|-|+..+.
T Consensus 136 g~lntLiigpP~~GKTTlLRdiaR~~s 162 (308)
T COG3854 136 GWLNTLIIGPPQVGKTTLLRDIARLLS 162 (308)
T ss_pred CceeeEEecCCCCChHHHHHHHHHHhh
Confidence 445689999999999999999999874
No 374
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=95.68 E-value=0.033 Score=57.88 Aligned_cols=91 Identities=20% Similarity=0.259 Sum_probs=79.0
Q ss_pred CceEEEEEeCCCCCCh-----hHHHHHHHHHHHHHHhHcCCC--CeEEEEEeecCCcEEEcCCCcCHHHHHHHHhcCC-C
Q 006254 561 GALVIFVVDASGSMAL-----NRMQNAKGAALKLLAESYTCR--DQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLP-C 632 (653)
Q Consensus 561 ~~~v~~vvD~SgSM~~-----~r~~~ak~a~~~ll~~ay~~r--d~v~li~F~~~~a~~~lp~t~~~~~~~~~L~~l~-~ 632 (653)
-+.+++|+|.|-+|.- +|+..+-..+..|+.+-|.++ .++|+|+..+..|+.+...|.+.......|..+. +
T Consensus 60 iRhl~iviD~S~am~e~Df~P~r~a~~~K~le~Fv~eFFdQNPiSQigii~~k~g~A~~lt~ltgnp~~hI~aL~~~~~~ 139 (378)
T KOG2807|consen 60 IRHLYIVIDCSRAMEEKDFRPSRFANVIKYLEGFVPEFFDQNPISQIGIISIKDGKADRLTDLTGNPRIHIHALKGLTEC 139 (378)
T ss_pred heeEEEEEEhhhhhhhccCCchHHHHHHHHHHHHHHHHhccCchhheeEEEEecchhhHHHHhcCCHHHHHHHHhccccc
Confidence 4689999999999943 799988888899998877665 6899999998889999999999999988998887 7
Q ss_pred CCCCchHHHHHHHHHHHhh
Q 006254 633 GGGSPLAHGLSMGWAKCGE 651 (653)
Q Consensus 633 gG~Tpl~~gl~~a~~~l~~ 651 (653)
+|.-.|..||+.|.+.|..
T Consensus 140 ~g~fSLqNaLe~a~~~Lk~ 158 (378)
T KOG2807|consen 140 SGDFSLQNALELAREVLKH 158 (378)
T ss_pred CCChHHHHHHHHHHHHhcC
Confidence 8888999999999998864
No 375
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.64 E-value=0.0098 Score=56.90 Aligned_cols=26 Identities=27% Similarity=0.253 Sum_probs=23.7
Q ss_pred CceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~ 141 (653)
...|+|.|+||||||++|+.|++.++
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999999885
No 376
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=95.64 E-value=0.022 Score=57.47 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=19.3
Q ss_pred EEEECCCCCHHHHHHHHHHhh
Q 006254 119 IAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 119 VLL~GppGTGKT~lArala~~ 139 (653)
++|.|+||+|||++++.+...
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~ 21 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKD 21 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHh
Confidence 478999999999999999886
No 377
>COG2718 Uncharacterized conserved protein [Function unknown]
Probab=95.58 E-value=0.058 Score=57.61 Aligned_cols=102 Identities=22% Similarity=0.228 Sum_probs=56.9
Q ss_pred ceeeecCcchhhhhhccC----CceEEEEEeCCCCCChhHHHHHHHHHHHHHHhHc-CCCCeEEEEEeecCCcEEEcCCC
Q 006254 543 KVFVEKTDMRAKRMARKA----GALVIFVVDASGSMALNRMQNAKGAALKLLAESY-TCRDQVSIIPFRGDSAEVLLPPS 617 (653)
Q Consensus 543 ~~~i~~~dl~~~~~~~~~----~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~ay-~~rd~v~li~F~~~~a~~~lp~t 617 (653)
++-....|||.+.++.++ .+.++.+.|+||||+...-..||..-. +|..-+ ++=++|=+|--+.......+.
T Consensus 224 RvPf~d~DlRf~~~~~~p~pes~AVmfclMDvSGSM~~~~KdlAkrFF~-lL~~FL~~kYenveivfIrHht~A~EVd-- 300 (423)
T COG2718 224 RVPFIDEDLRYKRYEKVPKPESNAVMFCLMDVSGSMDQSEKDLAKRFFF-LLYLFLRRKYENVEIVFIRHHTEAKEVD-- 300 (423)
T ss_pred cCCccccchhccCCccccCCccceEEEEEEecCCCcchHHHHHHHHHHH-HHHHHHhcccceeEEEEEeecCcceecc--
Confidence 443334999998776543 344555569999998643233443321 111211 222444333333221112221
Q ss_pred cCHHHHHHHHhcCCCCCCCchHHHHHHHHHHHhhcC
Q 006254 618 RSIAMARKRLERLPCGGGSPLAHGLSMGWAKCGEEW 653 (653)
Q Consensus 618 ~~~~~~~~~L~~l~~gG~Tpl~~gl~~a~~~l~~~~ 653 (653)
+.-+=...-+|||-...||.++.+.+..+|
T Consensus 301 ------E~dFF~~~esGGTivSSAl~~m~evi~ErY 330 (423)
T COG2718 301 ------ETDFFYSQESGGTIVSSALKLMLEVIKERY 330 (423)
T ss_pred ------hhhceeecCCCCeEeHHHHHHHHHHHHhhC
Confidence 112224567899999999999999999876
No 378
>PF13245 AAA_19: Part of AAA domain
Probab=95.55 E-value=0.012 Score=49.29 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=18.1
Q ss_pred ceEEEECCCCCHHH-HHHHHHHhhC
Q 006254 117 GGIAISGRRGTAKT-VMARGLHAIL 140 (653)
Q Consensus 117 ~gVLL~GppGTGKT-~lArala~~l 140 (653)
+-++|.|||||||| ++++.++.++
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34566999999999 6666666665
No 379
>PHA00729 NTP-binding motif containing protein
Probab=95.52 E-value=0.0091 Score=60.40 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=22.7
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
..|+|+|+||||||++|.+|+..+.
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999763
No 380
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.49 E-value=0.01 Score=57.72 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=21.5
Q ss_pred EEEECCCCCHHHHHHHHHHhhCC
Q 006254 119 IAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (653)
|+|.|+||+||||+|+.|+..++
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999875
No 381
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.49 E-value=0.011 Score=48.24 Aligned_cols=22 Identities=41% Similarity=0.629 Sum_probs=20.6
Q ss_pred EEEECCCCCHHHHHHHHHHhhC
Q 006254 119 IAISGRRGTAKTVMARGLHAIL 140 (653)
Q Consensus 119 VLL~GppGTGKT~lArala~~l 140 (653)
|.|.|++|+|||++++.++..+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999986
No 382
>PRK13947 shikimate kinase; Provisional
Probab=95.46 E-value=0.015 Score=55.81 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=22.5
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
+|+|.|+||+|||++++.|++.++
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999999884
No 383
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.46 E-value=0.016 Score=57.71 Aligned_cols=34 Identities=29% Similarity=0.319 Sum_probs=22.2
Q ss_pred HHHHHHhcccCCCce-EEEECCCCCHHHHHHHHHHhhC
Q 006254 104 KTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAIL 140 (653)
Q Consensus 104 k~aL~~~av~p~~~g-VLL~GppGTGKT~lArala~~l 140 (653)
+.|+..+.- ..+ .+|.||||||||+++..+...+
T Consensus 7 ~~Ai~~~~~---~~~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 7 REAIQSALS---SNGITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHCT---SSE-EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHc---CCCCEEEECCCCCChHHHHHHHHHHh
Confidence 445544332 344 9999999999997666666554
No 384
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=95.45 E-value=0.021 Score=69.25 Aligned_cols=55 Identities=22% Similarity=0.264 Sum_probs=36.5
Q ss_pred cCceEEecccccCCHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecC----CCCcccHHHHhhhcc
Q 006254 224 HRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP----EEGVVREHLLDRIAI 291 (653)
Q Consensus 224 ~~giL~IDEi~~l~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp----~eg~l~~aLldRf~~ 291 (653)
...+|+|||+..++......|+......- ++++|||=.+. +.|..-..|..+++.
T Consensus 433 ~~~vlIVDEASMv~~~~m~~LL~~a~~~g-------------arvVLVGD~~QLpsV~aG~~f~~L~~~~~~ 491 (988)
T PRK13889 433 SRDVLVIDEAGMVGTRQLERVLSHAADAG-------------AKVVLVGDPQQLQAIEAGAAFRSIHERHGG 491 (988)
T ss_pred cCcEEEEECcccCCHHHHHHHHHhhhhCC-------------CEEEEECCHHHcCCCCCCchHHHHHHhcCe
Confidence 34699999999999999999988664321 25677775442 234433455566553
No 385
>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain
Probab=95.39 E-value=0.034 Score=55.55 Aligned_cols=51 Identities=24% Similarity=0.247 Sum_probs=37.6
Q ss_pred hccCCceEEEEEeCCCCCChhHHHHHHHHHHHHHHhHcCCCCeEEEEEeec
Q 006254 557 ARKAGALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRG 607 (653)
Q Consensus 557 ~~~~~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~ay~~rd~v~li~F~~ 607 (653)
.......|-||||+||||.+.++..|..++-.|..-.-+-+-.+=+++|..
T Consensus 8 ~~~~d~~VtlLID~SGSMrgr~~~vA~~~adila~aL~~~gvp~EVlGFtT 58 (219)
T PF11775_consen 8 TPFRDTVVTLLIDCSGSMRGRPIEVAALCADILARALERCGVPVEVLGFTT 58 (219)
T ss_pred cccCCeEEEEEEeCCcCCCCChHHHHHHHHHHHHHHHHhCCCCeEEEeeec
Confidence 344578899999999999988888776555555444456688888889953
No 386
>PRK13764 ATPase; Provisional
Probab=95.38 E-value=0.044 Score=63.18 Aligned_cols=27 Identities=30% Similarity=0.511 Sum_probs=24.6
Q ss_pred CCceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 115 EIGGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l~ 141 (653)
..++|||.|++|+||||++++++..++
T Consensus 256 ~~~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 357899999999999999999999886
No 387
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.38 E-value=0.012 Score=57.64 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=22.2
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
.|+|.|+||+||||+|+.|++.++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999865
No 388
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.37 E-value=0.12 Score=51.50 Aligned_cols=25 Identities=36% Similarity=0.379 Sum_probs=22.5
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.-|.|.|++|+||||++++|...++
T Consensus 7 ~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3478999999999999999999876
No 389
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.31 E-value=0.053 Score=50.42 Aligned_cols=28 Identities=25% Similarity=0.240 Sum_probs=24.5
Q ss_pred CCCceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 114 REIGGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 114 p~~~gVLL~GppGTGKT~lArala~~l~ 141 (653)
+...-|+|.|+.|+||||++|.+++.++
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3445699999999999999999999885
No 390
>PRK07261 topology modulation protein; Provisional
Probab=95.31 E-value=0.013 Score=56.91 Aligned_cols=24 Identities=38% Similarity=0.483 Sum_probs=21.6
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|+|.|++|+||||+|+.|+..+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~ 25 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYN 25 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998764
No 391
>PRK06217 hypothetical protein; Validated
Probab=95.28 E-value=0.018 Score=56.25 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=22.2
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
.|+|.|.+|+||||+++.|++.++
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999999874
No 392
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.26 E-value=0.065 Score=55.98 Aligned_cols=26 Identities=27% Similarity=0.222 Sum_probs=24.1
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILPP 142 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~ 142 (653)
.+++|.||+|+||||+.+.++..+.+
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~ 137 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILST 137 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCC
Confidence 68999999999999999999999863
No 393
>PRK08233 hypothetical protein; Provisional
Probab=95.19 E-value=0.015 Score=56.26 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=22.0
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|.|.|+||+||||+|+.|+..++
T Consensus 5 iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 378899999999999999999886
No 394
>PRK00625 shikimate kinase; Provisional
Probab=95.18 E-value=0.018 Score=55.99 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=22.1
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
.|+|.|.||+||||+++.|++.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999873
No 395
>PRK06762 hypothetical protein; Provisional
Probab=95.18 E-value=0.015 Score=55.73 Aligned_cols=24 Identities=38% Similarity=0.492 Sum_probs=22.0
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
=|+|.|+||+||||+|+.|++.++
T Consensus 4 li~i~G~~GsGKST~A~~L~~~l~ 27 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQERLG 27 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999999885
No 396
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=95.16 E-value=0.026 Score=69.04 Aligned_cols=58 Identities=21% Similarity=0.338 Sum_probs=39.7
Q ss_pred CceEEecccccCCHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecC----CCCcccHHHHhhhccccccc
Q 006254 225 RGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP----EEGVVREHLLDRIAINLSAD 296 (653)
Q Consensus 225 ~giL~IDEi~~l~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp----~eg~l~~aLldRf~~~v~l~ 296 (653)
+.+|+|||+.-++......|+..+...- ++++|||=.+. ..|..-..|..+++.. .+.
T Consensus 469 ~~vlVIDEAsMv~~~~m~~Ll~~~~~~g-------------arvVLVGD~~QL~~V~aG~~f~~l~~~i~~a-~Lt 530 (1102)
T PRK13826 469 KTVFVLDEAGMVASRQMALFVEAVTRAG-------------AKLVLVGDPEQLQPIEAGAAFRAIADRIGYA-ELE 530 (1102)
T ss_pred CcEEEEECcccCCHHHHHHHHHHHHhcC-------------CEEEEECCHHHcCCCCCCcHHHHHHhhcCEE-Eee
Confidence 5699999999999999999999886321 25677775442 2344445666776643 444
No 397
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.14 E-value=0.014 Score=55.79 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=21.2
Q ss_pred EEEECCCCCHHHHHHHHHHhhCC
Q 006254 119 IAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (653)
++|.|++|+||||+|+.|+..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999875
No 398
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.14 E-value=0.018 Score=62.52 Aligned_cols=23 Identities=48% Similarity=0.525 Sum_probs=21.3
Q ss_pred eEEEECCCCCHHHHHHHHHHhhC
Q 006254 118 GIAISGRRGTAKTVMARGLHAIL 140 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l 140 (653)
-++|.|.||||||.||-.++..+
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 37999999999999999999987
No 399
>PRK14532 adenylate kinase; Provisional
Probab=95.13 E-value=0.016 Score=56.67 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=22.1
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
.|+|.|+||+||||+|+.|++.++
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g 25 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERG 25 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999999875
No 400
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=95.11 E-value=0.13 Score=50.85 Aligned_cols=90 Identities=18% Similarity=0.192 Sum_probs=78.4
Q ss_pred eEEEEEeCCCCCC-h----hHHHHHHHHHHHHHHhHcC--CCCeEEEEEeecCCcEEEcCCCcCHHHHHHHHhcCCCCCC
Q 006254 563 LVIFVVDASGSMA-L----NRMQNAKGAALKLLAESYT--CRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPCGGG 635 (653)
Q Consensus 563 ~v~~vvD~SgSM~-~----~r~~~ak~a~~~ll~~ay~--~rd~v~li~F~~~~a~~~lp~t~~~~~~~~~L~~l~~gG~ 635 (653)
.+++++|-|-=|. + .|+.+=|.++..+...-++ ....||||+..+...+++.-+|++...+...+..+++.|+
T Consensus 5 atmi~iDNse~mrNgDy~PtRf~aQ~daVn~v~~~K~~snpEntvGiitla~a~~~vLsT~T~d~gkils~lh~i~~~g~ 84 (259)
T KOG2884|consen 5 ATMICIDNSEYMRNGDYLPTRFQAQKDAVNLVCQAKLRSNPENTVGIITLANASVQVLSTLTSDRGKILSKLHGIQPHGK 84 (259)
T ss_pred eEEEEEeChHHhhcCCCChHHHHHHHHHHHHHHHhhhcCCcccceeeEeccCCCceeeeeccccchHHHHHhcCCCcCCc
Confidence 4788999998883 2 7999999999998865443 4578999999988899999999999999999999999999
Q ss_pred CchHHHHHHHHHHHhhc
Q 006254 636 SPLAHGLSMGWAKCGEE 652 (653)
Q Consensus 636 Tpl~~gl~~a~~~l~~~ 652 (653)
-.+..||..|.-.|..+
T Consensus 85 ~~~~~~i~iA~lalkhR 101 (259)
T KOG2884|consen 85 ANFMTGIQIAQLALKHR 101 (259)
T ss_pred ccHHHHHHHHHHHHHhh
Confidence 99999999998877643
No 401
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.09 E-value=0.017 Score=54.32 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=21.1
Q ss_pred EEEECCCCCHHHHHHHHHHhhCC
Q 006254 119 IAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (653)
++|.|+||+||||+|+.|+..+.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~ 24 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLG 24 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcC
Confidence 68999999999999999999764
No 402
>PRK13949 shikimate kinase; Provisional
Probab=95.07 E-value=0.022 Score=55.22 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=22.3
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
.|+|.|++|+||||+++.|++.+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999999873
No 403
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.07 E-value=0.016 Score=56.20 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=22.3
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|+|.|+||+||||+|+.|+..++
T Consensus 4 ~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhC
Confidence 489999999999999999999875
No 404
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.00 E-value=0.017 Score=54.12 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=22.0
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
.|+|.|++|+|||++|+.|+..++
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999875
No 405
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.96 E-value=0.024 Score=52.57 Aligned_cols=23 Identities=39% Similarity=0.504 Sum_probs=21.0
Q ss_pred EEEECCCCCHHHHHHHHHHhhCC
Q 006254 119 IAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (653)
|+|.|++|+||||+|+.|+..+.
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 68999999999999999999763
No 406
>PLN02318 phosphoribulokinase/uridine kinase
Probab=94.93 E-value=0.39 Score=55.15 Aligned_cols=44 Identities=25% Similarity=0.268 Sum_probs=31.4
Q ss_pred echHHHHHHHHHhccc-CCCceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 98 VGQDAIKTALLLGAID-REIGGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 98 vGq~~~k~aL~~~av~-p~~~gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|-=-+.+++.+...+ +...=|.|.|++|+||||+++.|+..++
T Consensus 46 ~g~~~~ira~qlL~~~~~~riIIGIaGpSGSGKTTLAk~LaglLp 90 (656)
T PLN02318 46 KGFFVVIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFMP 90 (656)
T ss_pred cchhhhhHHHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhCC
Confidence 3555566666443332 2233488999999999999999999875
No 407
>COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=94.93 E-value=0.13 Score=56.15 Aligned_cols=92 Identities=29% Similarity=0.458 Sum_probs=78.8
Q ss_pred ccCCceEEEEEeCCCCCChhHHHHHHHHHHHHHHhHcCCCCeEEEEEeecCCcEEEcCCC--cCHHHHHHHHhc-CCCCC
Q 006254 558 RKAGALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPS--RSIAMARKRLER-LPCGG 634 (653)
Q Consensus 558 ~~~~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~ay~~rd~v~li~F~~~~a~~~lp~t--~~~~~~~~~L~~-l~~gG 634 (653)
.+...+.+++.|+||||....+..++.+...++ ..+...|.+.+++|.+ ...+.+|++ .+...+...+.. +.++|
T Consensus 34 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 111 (399)
T COG2304 34 LLVPANLTLAIDTSGSMTGALLELAKSAAIELV-NGLNPGDLLSIVTFAG-SADVLIPPTGATNKESITAAIDQSLQAGG 111 (399)
T ss_pred cccCcceEEEeccCCCccchhHHHHHHHHHHHh-cccCCCCceEEEEecC-CcceecCcccccCHHHHHHHHhhhhcccc
Confidence 344789999999999997744888888888887 6789999999999988 788999988 577778888887 89999
Q ss_pred CCchHHHHHHHHHHHhh
Q 006254 635 GSPLAHGLSMGWAKCGE 651 (653)
Q Consensus 635 ~Tpl~~gl~~a~~~l~~ 651 (653)
.|.+..++..+.+.+.+
T Consensus 112 ~~~~~~~~~~~~~~~~~ 128 (399)
T COG2304 112 ATAVEASLSLAVELAAK 128 (399)
T ss_pred ccHHHHHHHHHHHHhhh
Confidence 99999999999888765
No 408
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=94.88 E-value=0.02 Score=56.03 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=21.4
Q ss_pred EEEECCCCCHHHHHHHHHHhhCC
Q 006254 119 IAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (653)
|+|.|+||+||||+++.|++.++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~ 24 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYG 24 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999864
No 409
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.87 E-value=0.56 Score=51.81 Aligned_cols=24 Identities=33% Similarity=0.200 Sum_probs=22.3
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-++|.||.++||||+++.+...+.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~ 62 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLL 62 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCC
Confidence 799999999999999999998875
No 410
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.83 E-value=0.02 Score=55.59 Aligned_cols=25 Identities=20% Similarity=0.141 Sum_probs=22.1
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.-|+|.|+||+||||+++.|+..++
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g 28 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYG 28 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3589999999999999999998764
No 411
>PRK14530 adenylate kinase; Provisional
Probab=94.78 E-value=0.021 Score=57.35 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=22.8
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
..|+|.|+||+||||+++.|+..++
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3599999999999999999999875
No 412
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=94.76 E-value=0.072 Score=58.15 Aligned_cols=27 Identities=22% Similarity=0.249 Sum_probs=24.0
Q ss_pred CCceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 115 EIGGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l~ 141 (653)
..+.|||.||+|+||||+.+++...++
T Consensus 148 ~~GlilI~G~TGSGKTT~l~al~~~i~ 174 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLAASIYQHCG 174 (372)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457799999999999999999988774
No 413
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.75 E-value=0.028 Score=51.64 Aligned_cols=46 Identities=17% Similarity=0.215 Sum_probs=32.8
Q ss_pred ceechHHHHHHHHHhc----ccC-CCce--EEEECCCCCHHHHHHHHHHhhCC
Q 006254 96 AVVGQDAIKTALLLGA----IDR-EIGG--IAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 96 ~IvGq~~~k~aL~~~a----v~p-~~~g--VLL~GppGTGKT~lArala~~l~ 141 (653)
.+.||.-+++.+.-++ .++ ...+ +-+.|++|||||.+++.||+.+-
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly 78 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLY 78 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHH
Confidence 5889987766653322 222 2233 45899999999999999999864
No 414
>PF11265 Med25_VWA: Mediator complex subunit 25 von Willebrand factor type A; InterPro: IPR021419 The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA domain which is this one, an SD2 domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This VWA or von Willebrand factor type A domain when bound to RAR and the histone acetyltransferase CBP is responsible for recruiting Med1 to the rest of the Mediator complex [].
Probab=94.71 E-value=0.25 Score=49.92 Aligned_cols=91 Identities=16% Similarity=0.214 Sum_probs=64.7
Q ss_pred CCceEEEEEeCCCCCCh--h--HHHHHHHHHHHHHHhHc--------CCCCeEEEEEeecC-----CcEEEcCCCcCHHH
Q 006254 560 AGALVIFVVDASGSMAL--N--RMQNAKGAALKLLAESY--------TCRDQVSIIPFRGD-----SAEVLLPPSRSIAM 622 (653)
Q Consensus 560 ~~~~v~~vvD~SgSM~~--~--r~~~ak~a~~~ll~~ay--------~~rd~v~li~F~~~-----~a~~~lp~t~~~~~ 622 (653)
....||||||.++.|+. + |..+.--+++.|-.... ...-.+|||+|+.. -.-...++|.+...
T Consensus 12 ~~~~vVfvvEgTAalgpy~~~Lkt~Yl~P~le~f~~g~~~e~~~~~~~~~t~y~LVvf~t~d~~~~~~v~~~g~T~~~~~ 91 (226)
T PF11265_consen 12 PQAQVVFVVEGTAALGPYWNTLKTNYLDPILEYFNGGPIAERDFGGDYSNTEYGLVVFNTADCYPEPIVQRSGPTSSPQK 91 (226)
T ss_pred ccceEEEEEecchhhhhhHHHHHHHHHHHHHHHhcCCCcccccccccCCCceEEEEEEeccCCCcccceeccCCcCCHHH
Confidence 46789999999999986 2 55555555555532111 24467899999643 12224678999999
Q ss_pred HHHHHhcCCCCCCC-----chHHHHHHHHHHHh
Q 006254 623 ARKRLERLPCGGGS-----PLAHGLSMGWAKCG 650 (653)
Q Consensus 623 ~~~~L~~l~~gG~T-----pl~~gl~~a~~~l~ 650 (653)
...+|+.++..||. .++.||..|++.+.
T Consensus 92 fl~~L~~I~f~GGG~e~~a~iaEGLa~AL~~fd 124 (226)
T PF11265_consen 92 FLQWLDAIQFSGGGFESCAAIAEGLAEALQCFD 124 (226)
T ss_pred HHHHHHccCcCCCCcccchhHHHHHHHHHHHhc
Confidence 99999999754332 48899999998775
No 415
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.70 E-value=0.09 Score=53.55 Aligned_cols=27 Identities=26% Similarity=0.279 Sum_probs=20.4
Q ss_pred CCceEEEECCCCCHHHHHH-HHHHhhCC
Q 006254 115 EIGGIAISGRRGTAKTVMA-RGLHAILP 141 (653)
Q Consensus 115 ~~~gVLL~GppGTGKT~lA-rala~~l~ 141 (653)
...-++|.|++|||||+++ +.++..+.
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~ 50 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQ 50 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3446999999999999997 45555443
No 416
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=94.68 E-value=0.15 Score=62.82 Aligned_cols=19 Identities=16% Similarity=0.356 Sum_probs=16.7
Q ss_pred CCceEEEECCCCCHHHHHH
Q 006254 115 EIGGIAISGRRGTAKTVMA 133 (653)
Q Consensus 115 ~~~gVLL~GppGTGKT~lA 133 (653)
..+++++.||||+|||++.
T Consensus 1493 t~R~~i~cGppGSgK~mlM 1511 (3164)
T COG5245 1493 TLRSYIYCGPPGSGKEMLM 1511 (3164)
T ss_pred ccceEEEECCCCCccchhc
Confidence 4688999999999999964
No 417
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=94.67 E-value=0.039 Score=59.38 Aligned_cols=28 Identities=29% Similarity=0.342 Sum_probs=25.8
Q ss_pred CCceEEEECCCCCHHHHHHHHHHhhCCC
Q 006254 115 EIGGIAISGRRGTAKTVMARGLHAILPP 142 (653)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l~~ 142 (653)
..++|||.|++|+||||+.++|...+|+
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip~ 186 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIPA 186 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCCC
Confidence 4678999999999999999999999985
No 418
>PRK14531 adenylate kinase; Provisional
Probab=94.66 E-value=0.024 Score=55.47 Aligned_cols=25 Identities=24% Similarity=0.185 Sum_probs=22.6
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
..|+|.|+||+||||+++.|+..++
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3589999999999999999999874
No 419
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.56 E-value=0.029 Score=53.64 Aligned_cols=21 Identities=38% Similarity=0.469 Sum_probs=18.2
Q ss_pred EEEECCCCCHHHHHHHHHHhh
Q 006254 119 IAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 119 VLL~GppGTGKT~lArala~~ 139 (653)
|.|.|.+|||||||++.|+..
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999997
No 420
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.56 E-value=0.027 Score=54.59 Aligned_cols=24 Identities=25% Similarity=0.236 Sum_probs=21.9
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-++|.|++|+||||+++.|+..++
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 378999999999999999999875
No 421
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=94.52 E-value=0.033 Score=53.90 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=23.1
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.+|+|.|.+|+||||+.|+||+.|.
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~ 27 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALN 27 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcC
Confidence 4699999999999999999999983
No 422
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.48 E-value=0.052 Score=60.73 Aligned_cols=59 Identities=15% Similarity=0.177 Sum_probs=42.6
Q ss_pred cccccCCCCCCCCceechH----HHHHHHH-HhcccCCCce--EEEECCCCCHHHHHHHHHHhhCC
Q 006254 83 DQDSYGRQFFPLAAVVGQD----AIKTALL-LGAIDREIGG--IAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 83 ~~~~~~~~~~~f~~IvGq~----~~k~aL~-~~av~p~~~g--VLL~GppGTGKT~lArala~~l~ 141 (653)
+....+..|...+++.=+. +++..|. ++...|..++ +||+||+||||||.++.|+.++.
T Consensus 70 elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg 135 (634)
T KOG1970|consen 70 ELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELG 135 (634)
T ss_pred chhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhC
Confidence 3344455666666665544 4555553 4566776664 99999999999999999999997
No 423
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=94.36 E-value=0.051 Score=52.75 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=22.8
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
..|+|.|++|+||||+++.|+..+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcC
Confidence 4699999999999999999999763
No 424
>PRK02496 adk adenylate kinase; Provisional
Probab=94.36 E-value=0.031 Score=54.57 Aligned_cols=24 Identities=25% Similarity=0.203 Sum_probs=21.8
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
.++|.|+||+||||+++.|+..++
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~ 26 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLH 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998764
No 425
>PRK13948 shikimate kinase; Provisional
Probab=94.34 E-value=0.059 Score=52.93 Aligned_cols=28 Identities=29% Similarity=0.361 Sum_probs=24.6
Q ss_pred CCCceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 114 REIGGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 114 p~~~gVLL~GppGTGKT~lArala~~l~ 141 (653)
+....|+|.|.+|+||||+++.|++.+.
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3456799999999999999999999874
No 426
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=94.33 E-value=0.072 Score=56.10 Aligned_cols=79 Identities=22% Similarity=0.176 Sum_probs=52.6
Q ss_pred CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeEeCCCCCc
Q 006254 115 EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVT 194 (653)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~ 194 (653)
...+|-|+|.+++|||++++..+...+. |.
T Consensus 192 ~~~~~hl~G~Ss~GKTt~~~~a~Sv~G~------------p~-------------------------------------- 221 (286)
T PF06048_consen 192 EGFGFHLYGQSSSGKTTALQLAASVWGN------------PD-------------------------------------- 221 (286)
T ss_pred CceEEEEEeCCCCCHHHHHHHhhhhCcC------------ch--------------------------------------
Confidence 4567999999999999999999987651 10
Q ss_pred ccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHHHHHHcCc
Q 006254 195 EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGV 252 (653)
Q Consensus 195 ~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~l~~g~ 252 (653)
.++.+.+ +....-.+.....++..|+|||+...++..+..+.-.+.+|.
T Consensus 222 --~l~~sw~-------~T~n~le~~a~~~nd~~l~lDE~~~~~~~~~~~~iY~l~nG~ 270 (286)
T PF06048_consen 222 --GLIRSWN-------STDNGLERTAAAHNDLPLVLDELSQADPKDVGSIIYMLANGQ 270 (286)
T ss_pred --hhhhcch-------hhHHHHHHHHHHcCCcceEehhccccchhHHHHHHHHHhCCC
Confidence 1112111 000111223344567789999999998887777777777765
No 427
>KOG3768 consensus DEAD box RNA helicase [General function prediction only]
Probab=94.29 E-value=0.086 Score=58.83 Aligned_cols=88 Identities=22% Similarity=0.337 Sum_probs=56.5
Q ss_pred eEEEEEeCCCCCCh------hHHHHHHHHHHHHHHhH----cCCCCeEEEEEeecCCcEEEcCCCcCHHHHHHHHhcCCC
Q 006254 563 LVIFVVDASGSMAL------NRMQNAKGAALKLLAES----YTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPC 632 (653)
Q Consensus 563 ~v~~vvD~SgSM~~------~r~~~ak~a~~~ll~~a----y~~rd~v~li~F~~~~a~~~lp~t~~~~~~~~~L~~l~~ 632 (653)
-++|+||+||||.. .=+..||+|++.|+..- ...+|++-|++|..---.+-+-....-..+...|..|.+
T Consensus 3 i~lFllDTS~SM~qrah~~~tylD~AKgaVEtFiK~R~r~~~~~gdryml~TfeepP~~vk~~~~~~~a~~~~eik~l~a 82 (888)
T KOG3768|consen 3 IFLFLLDTSGSMSQRAHPQFTYLDLAKGAVETFIKQRTRVGRETGDRYMLTTFEEPPKNVKVACEKLGAVVIEEIKKLHA 82 (888)
T ss_pred eEEEEEecccchhhhccCCchhhHHHHHHHHHHHHHHhccccccCceEEEEecccCchhhhhHHhhcccHHHHHHHhhcC
Confidence 36899999999943 57889999999999532 235688889999532111222222334445567777776
Q ss_pred CCCC-chHHHHHHHHHHHh
Q 006254 633 GGGS-PLAHGLSMGWAKCG 650 (653)
Q Consensus 633 gG~T-pl~~gl~~a~~~l~ 650 (653)
.++| =+-+++..|.++|.
T Consensus 83 ~~~s~~~~~~~t~AFdlLn 101 (888)
T KOG3768|consen 83 PYGSCQLHHAITEAFDLLN 101 (888)
T ss_pred ccchhhhhHHHHHHhhhhh
Confidence 5555 44455555777663
No 428
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.26 E-value=0.031 Score=53.32 Aligned_cols=23 Identities=48% Similarity=0.579 Sum_probs=21.5
Q ss_pred EEEECCCCCHHHHHHHHHHhhCC
Q 006254 119 IAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (653)
|-|.|+|||||||+|+.|++.++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhC
Confidence 67899999999999999999986
No 429
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=94.24 E-value=0.16 Score=58.73 Aligned_cols=30 Identities=30% Similarity=0.398 Sum_probs=24.3
Q ss_pred ccCCCceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 112 IDREIGGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 112 v~p~~~gVLL~GppGTGKT~lArala~~l~ 141 (653)
+....|-||+.||+|+||||+..++.+.+.
T Consensus 312 ~~~~~Glilv~G~tGSGKTTtl~a~l~~~~ 341 (564)
T TIGR02538 312 IHKPQGMVLVTGPTGSGKTVSLYTALNILN 341 (564)
T ss_pred HHhcCCeEEEECCCCCCHHHHHHHHHHhhC
Confidence 333457799999999999999988877764
No 430
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=94.22 E-value=0.035 Score=55.57 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=21.3
Q ss_pred EEEECCCCCHHHHHHHHHHhhCC
Q 006254 119 IAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (653)
|+|.|+||+||||+|+.|+..++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g 24 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYG 24 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999998764
No 431
>PRK06547 hypothetical protein; Provisional
Probab=94.19 E-value=0.063 Score=52.21 Aligned_cols=26 Identities=35% Similarity=0.433 Sum_probs=22.5
Q ss_pred CceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~ 141 (653)
..-|+|.|++|+||||+++.|++.++
T Consensus 15 ~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 15 MITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34588889999999999999999764
No 432
>PRK04040 adenylate kinase; Provisional
Probab=94.18 E-value=0.033 Score=54.95 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=22.2
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|+|+|.||+||||+++.+++.++
T Consensus 4 ~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 4 VVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHhc
Confidence 489999999999999999999885
No 433
>COG1084 Predicted GTPase [General function prediction only]
Probab=94.16 E-value=0.21 Score=52.85 Aligned_cols=34 Identities=29% Similarity=0.464 Sum_probs=29.1
Q ss_pred HhcccCCCceEEEECCCCCHHHHHHHHHHhhCCC
Q 006254 109 LGAIDREIGGIAISGRRGTAKTVMARGLHAILPP 142 (653)
Q Consensus 109 ~~av~p~~~gVLL~GppGTGKT~lArala~~l~~ 142 (653)
+=.++|....|++.|.|-+|||+|++.|...-|+
T Consensus 161 LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpE 194 (346)
T COG1084 161 LPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPE 194 (346)
T ss_pred CCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCc
Confidence 3457778888999999999999999999987663
No 434
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.12 E-value=0.072 Score=52.25 Aligned_cols=27 Identities=41% Similarity=0.636 Sum_probs=24.6
Q ss_pred CceEEEECCCCCHHHHHHHHHHhhCCC
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~~ 142 (653)
...++|.||+|+||||+.++|...+++
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~ 51 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPP 51 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCC
Confidence 567999999999999999999998863
No 435
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=94.09 E-value=0.049 Score=59.53 Aligned_cols=41 Identities=29% Similarity=0.350 Sum_probs=32.7
Q ss_pred eechHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCC
Q 006254 97 VVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPP 142 (653)
Q Consensus 97 IvGq~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~ 142 (653)
.-=.+.++..|.-.+ .||||.|+||.||||+|.++|..+..
T Consensus 249 Y~L~dkl~eRL~era-----eGILIAG~PGaGKsTFaqAlAefy~~ 289 (604)
T COG1855 249 YGLSDKLKERLEERA-----EGILIAGAPGAGKSTFAQALAEFYAS 289 (604)
T ss_pred cCCCHHHHHHHHhhh-----cceEEecCCCCChhHHHHHHHHHHHh
Confidence 333456777776633 79999999999999999999998753
No 436
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.05 E-value=0.038 Score=54.20 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=22.4
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
..|+|.||+|+||||+++.|+..++
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 3589999999999999999998775
No 437
>PRK04132 replication factor C small subunit; Provisional
Probab=94.02 E-value=0.03 Score=66.78 Aligned_cols=47 Identities=19% Similarity=0.163 Sum_probs=39.7
Q ss_pred ccCCCCCCCCceechHHHHHHHHHhcccCCCceEEEECCCCCHHHHH
Q 006254 86 SYGRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVM 132 (653)
Q Consensus 86 ~~~~~~~~f~~IvGq~~~k~aL~~~av~p~~~gVLL~GppGTGKT~l 132 (653)
..+.+|..|++|+||+.++..|...+-+....+++|+||||+||++.
T Consensus 10 ~~k~RP~~f~dIiGqe~i~~~Lk~~i~~~~i~h~l~~g~~g~~~cl~ 56 (846)
T PRK04132 10 VEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKCLT 56 (846)
T ss_pred HHhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEECCCCCCcccc
Confidence 34578899999999999999987766666677899999999999754
No 438
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.01 E-value=0.037 Score=52.36 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=21.4
Q ss_pred EEEECCCCCHHHHHHHHHHhhCC
Q 006254 119 IAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (653)
|+|.|.||+||||+|+.|+..+.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999873
No 439
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.01 E-value=0.04 Score=55.34 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=22.0
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
.|+|.|+||+||||+++.|+..++
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 389999999999999999999875
No 440
>PRK05541 adenylylsulfate kinase; Provisional
Probab=93.98 E-value=0.037 Score=53.59 Aligned_cols=25 Identities=36% Similarity=0.369 Sum_probs=22.7
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.-|+|.|++|+||||+++.|+..+.
T Consensus 8 ~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 8 YVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4599999999999999999999875
No 441
>PRK14527 adenylate kinase; Provisional
Probab=93.97 E-value=0.042 Score=54.07 Aligned_cols=25 Identities=24% Similarity=0.201 Sum_probs=22.2
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.-|+|.|+||+||||+|+.|+..+.
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3499999999999999999998764
No 442
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=93.97 E-value=0.062 Score=51.66 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=22.6
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
..++|.|.+|+|||++++.|+..++
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999999874
No 443
>PLN02200 adenylate kinase family protein
Probab=93.95 E-value=0.041 Score=56.21 Aligned_cols=24 Identities=13% Similarity=0.119 Sum_probs=22.0
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|+|.|+||+||||+|+.|+..++
T Consensus 45 ii~I~G~PGSGKsT~a~~La~~~g 68 (234)
T PLN02200 45 ITFVLGGPGSGKGTQCEKIVETFG 68 (234)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999875
No 444
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=93.91 E-value=0.035 Score=54.82 Aligned_cols=23 Identities=43% Similarity=0.673 Sum_probs=21.7
Q ss_pred EEEECCCCCHHHHHHHHHHhhCC
Q 006254 119 IAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (653)
|-|.|++|+||||+|+.|+..|.
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 67999999999999999999986
No 445
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.89 E-value=0.042 Score=54.24 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=21.2
Q ss_pred EEEECCCCCHHHHHHHHHHhhCC
Q 006254 119 IAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (653)
|.|.|++|+||||+++.|...++
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l~ 24 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQLG 24 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 67999999999999999999874
No 446
>PTZ00088 adenylate kinase 1; Provisional
Probab=93.86 E-value=0.043 Score=55.87 Aligned_cols=24 Identities=25% Similarity=0.207 Sum_probs=22.1
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
.|+|.|+||+||||+|+.|++.+.
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 499999999999999999999864
No 447
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.86 E-value=0.042 Score=53.16 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=22.1
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-++|.||+|+||||+++.|+...+
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCc
Confidence 489999999999999999999876
No 448
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=93.82 E-value=0.043 Score=57.86 Aligned_cols=24 Identities=33% Similarity=0.350 Sum_probs=21.8
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|+|.|+||+||||+|+.|+..++
T Consensus 4 liil~G~pGSGKSTla~~L~~~~~ 27 (300)
T PHA02530 4 IILTVGVPGSGKSTWAREFAAKNP 27 (300)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHCC
Confidence 378899999999999999999874
No 449
>PLN02165 adenylate isopentenyltransferase
Probab=93.76 E-value=0.067 Score=57.24 Aligned_cols=29 Identities=21% Similarity=0.334 Sum_probs=24.8
Q ss_pred cCCCceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 113 DREIGGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 113 ~p~~~gVLL~GppGTGKT~lArala~~l~ 141 (653)
++...-|+|.||+|+|||+++..|+..++
T Consensus 40 ~~~g~iivIiGPTGSGKStLA~~LA~~l~ 68 (334)
T PLN02165 40 NCKDKVVVIMGATGSGKSRLSVDLATRFP 68 (334)
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHHHHcC
Confidence 33444699999999999999999999885
No 450
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=93.76 E-value=0.035 Score=56.10 Aligned_cols=22 Identities=32% Similarity=0.265 Sum_probs=19.5
Q ss_pred CceEEEECCCCCHHHHHHHHHH
Q 006254 116 IGGIAISGRRGTAKTVMARGLH 137 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala 137 (653)
..-+||+|+||+|||++|+.++
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcC
Confidence 3459999999999999999885
No 451
>PRK14528 adenylate kinase; Provisional
Probab=93.75 E-value=0.048 Score=53.62 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=21.8
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
.|+|.|+||+||||+++.|++.+.
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~ 26 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLS 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998764
No 452
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=93.74 E-value=0.051 Score=52.25 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=23.7
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILPP 142 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~ 142 (653)
..++|.||+|+|||++.|.++.+.++
T Consensus 30 e~iaitGPSG~GKStllk~va~Lisp 55 (223)
T COG4619 30 EFIAITGPSGCGKSTLLKIVASLISP 55 (223)
T ss_pred ceEEEeCCCCccHHHHHHHHHhccCC
Confidence 34999999999999999999999874
No 453
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=93.74 E-value=0.13 Score=51.06 Aligned_cols=23 Identities=17% Similarity=0.167 Sum_probs=20.5
Q ss_pred ceEEEECCCCCHHHHHHHHHHhh
Q 006254 117 GGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (653)
.-++|.||.|+||||+.+.|+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHH
Confidence 45999999999999999999943
No 454
>PTZ00202 tuzin; Provisional
Probab=93.70 E-value=0.11 Score=57.47 Aligned_cols=52 Identities=15% Similarity=0.105 Sum_probs=39.4
Q ss_pred CCCCCCceechHHHHHHHHHhc--ccCCC-ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 90 QFFPLAAVVGQDAIKTALLLGA--IDREI-GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 90 ~~~~f~~IvGq~~~k~aL~~~a--v~p~~-~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.|.+..+++|.+....+|...+ ++... .-++|.|++|+|||+++|.+...++
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~ 311 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG 311 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3556789999999888884433 22221 2478999999999999999998775
No 455
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=93.70 E-value=0.042 Score=56.45 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=21.4
Q ss_pred EEEECCCCCHHHHHHHHHHhhCC
Q 006254 119 IAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (653)
|+|.|.||+||||+|+.|+..+.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999874
No 456
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.67 E-value=0.05 Score=53.87 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=22.9
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.-++|.||+|+|||++++.|+..++
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4589999999999999999999875
No 457
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.67 E-value=0.053 Score=50.57 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=21.4
Q ss_pred EEEECCCCCHHHHHHHHHHhhCC
Q 006254 119 IAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (653)
|+|.||+|+|||++++.|+..++
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCC
Confidence 68999999999999999999875
No 458
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=93.63 E-value=0.083 Score=56.04 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=24.6
Q ss_pred CCceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 115 EIGGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l~ 141 (653)
..+++||.|++|+||||++++|...++
T Consensus 131 ~~~~ilI~G~tGSGKTTll~al~~~i~ 157 (299)
T TIGR02782 131 ARKNILVVGGTGSGKTTLANALLAEIA 157 (299)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 457899999999999999999999885
No 459
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=93.61 E-value=0.083 Score=57.07 Aligned_cols=28 Identities=29% Similarity=0.506 Sum_probs=25.5
Q ss_pred CCceEEEECCCCCHHHHHHHHHHhhCCC
Q 006254 115 EIGGIAISGRRGTAKTVMARGLHAILPP 142 (653)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l~~ 142 (653)
..+.|||.|++|+||||++++|...+++
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~i~~ 188 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAIPP 188 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcccCC
Confidence 4678999999999999999999999874
No 460
>PF03731 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; InterPro: IPR005161 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the N-terminal alpha/beta domain. This domain only makes a small contribution to the dimer interface. The domain comprises a six stranded beta sheet of the Rossman fold [].; PDB: 1JEQ_A 1JEY_A.
Probab=93.53 E-value=0.38 Score=48.48 Aligned_cols=88 Identities=24% Similarity=0.261 Sum_probs=53.8
Q ss_pred EEEEEeCCCCCCh------hHHHHHHHHHHHHHHhH--cCCCCeEEEEEeecCC------------cEEEcCCC-cCHHH
Q 006254 564 VIFVVDASGSMAL------NRMQNAKGAALKLLAES--YTCRDQVSIIPFRGDS------------AEVLLPPS-RSIAM 622 (653)
Q Consensus 564 v~~vvD~SgSM~~------~r~~~ak~a~~~ll~~a--y~~rd~v~li~F~~~~------------a~~~lp~t-~~~~~ 622 (653)
++|+||+|.||.. ..+..|..++..++.+. ....|.||||.|+... ..++.|.. .+...
T Consensus 2 ~vflID~s~sM~~~~~~~~~~l~~al~~i~~~~~~ki~~~~kD~vgvvl~gt~~t~n~~~~~~~~~i~~l~~l~~~~~~~ 81 (224)
T PF03731_consen 2 TVFLIDVSPSMFEPSSESESPLEEALKAIEDLMQQKIISSPKDEVGVVLFGTDETNNPDEDSGYENIFVLQPLDPPSAER 81 (224)
T ss_dssp EEEEEE-SCGGGS-BTTCS-HHHHHHHHHHHHHHHHHHTT---EEEEEEES-SS-BST-TTT-STTEEEEEECC--BHHH
T ss_pred EEEEEECCHHHCCCCCCcchhHHHHHHHHHHHHHHHHcCCCCCeEEEEEEcCCCCCCcccccCCCceEEeecCCccCHHH
Confidence 7999999999942 36777777777777543 4566999999995432 22333433 35555
Q ss_pred HHHHHhcCC----------CCCCCchHHHHHHHHHHHhh
Q 006254 623 ARKRLERLP----------CGGGSPLAHGLSMGWAKCGE 651 (653)
Q Consensus 623 ~~~~L~~l~----------~gG~Tpl~~gl~~a~~~l~~ 651 (653)
++.....+. .....++.++|..|..++.+
T Consensus 82 l~~L~~~~~~~~~~~~~~~~~~~~~l~~al~v~~~~~~~ 120 (224)
T PF03731_consen 82 LKELEELLKPGDKFENFFSGSDEGDLSDALWVASDMFRE 120 (224)
T ss_dssp HHHHHTTSHHHHHHHHHC-SSS---HHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccccccccCCCCCccCHHHHHHHHHHHHHH
Confidence 555444343 35667899999999998875
No 461
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=93.52 E-value=0.29 Score=55.50 Aligned_cols=48 Identities=21% Similarity=0.185 Sum_probs=31.1
Q ss_pred CCCceechHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 93 PLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 93 ~f~~IvGq~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~ 141 (653)
+|+++--.+.....+.. ++....|-|||.||+|+||||+.+++...++
T Consensus 220 ~l~~Lg~~~~~~~~l~~-~~~~~~GlilitGptGSGKTTtL~a~L~~l~ 267 (486)
T TIGR02533 220 DLETLGMSPELLSRFER-LIRRPHGIILVTGPTGSGKTTTLYAALSRLN 267 (486)
T ss_pred CHHHcCCCHHHHHHHHH-HHhcCCCEEEEEcCCCCCHHHHHHHHHhccC
Confidence 44444333344444443 3322345589999999999999998877664
No 462
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=93.49 E-value=0.052 Score=51.88 Aligned_cols=24 Identities=38% Similarity=0.444 Sum_probs=22.1
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|+|.|.+|+||||+|++|...|.
T Consensus 4 vIwltGlsGsGKtTlA~~L~~~L~ 27 (156)
T PF01583_consen 4 VIWLTGLSGSGKTTLARALERRLF 27 (156)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 389999999999999999999884
No 463
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.42 E-value=0.076 Score=52.38 Aligned_cols=25 Identities=40% Similarity=0.587 Sum_probs=22.3
Q ss_pred EEEECCCCCHHHHHHHHHHhhCCCC
Q 006254 119 IAISGRRGTAKTVMARGLHAILPPI 143 (653)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~~~ 143 (653)
|.|.|.+|+||||+|+.|+..++..
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~~~ 26 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILPNC 26 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCC
Confidence 6789999999999999999998643
No 464
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=93.34 E-value=0.28 Score=58.90 Aligned_cols=23 Identities=30% Similarity=0.322 Sum_probs=21.5
Q ss_pred EEEECCCCCHHHHHHHHHHhhCC
Q 006254 119 IAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (653)
+|+.|+||.|||+.+..++..+.
T Consensus 360 ~l~~G~pGigKT~~~h~~~k~~g 382 (871)
T KOG1968|consen 360 LLLSGPPGIGKTTAAHKAAKELG 382 (871)
T ss_pred HHhcCCCCCCchhhHhhhhhhcc
Confidence 59999999999999999999886
No 465
>PRK04182 cytidylate kinase; Provisional
Probab=93.34 E-value=0.065 Score=51.54 Aligned_cols=24 Identities=46% Similarity=0.462 Sum_probs=22.0
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|+|.|.+|+||||+++.|++.++
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg 25 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 378999999999999999999875
No 466
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.30 E-value=0.057 Score=52.20 Aligned_cols=24 Identities=33% Similarity=0.457 Sum_probs=22.1
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|+|.|.+|+||||+++.|+..+.
T Consensus 6 ~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 6 TVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999999874
No 467
>PRK13946 shikimate kinase; Provisional
Probab=93.28 E-value=0.092 Score=51.42 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=23.6
Q ss_pred CceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~ 141 (653)
...|+|.|.+|+|||++++.|++.+.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 45699999999999999999999874
No 468
>PRK06696 uridine kinase; Validated
Probab=93.27 E-value=0.11 Score=52.57 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=22.4
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
=|.|.|++|+||||+|+.|+..++
T Consensus 24 iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 24 RVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 499999999999999999999985
No 469
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=93.27 E-value=0.067 Score=52.17 Aligned_cols=24 Identities=17% Similarity=0.433 Sum_probs=22.4
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-++|.|++|+||||+++.|+..+.
T Consensus 5 ~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 5 SYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 489999999999999999999886
No 470
>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=93.20 E-value=0.45 Score=46.10 Aligned_cols=89 Identities=16% Similarity=0.277 Sum_probs=76.4
Q ss_pred eEEEEEeCCCCCC-h----hHHHHHHHHHHHHHHhHcC--CCCeEEEEEeecCCcEEEcCCCcCHHHHHHHHhcCCCCCC
Q 006254 563 LVIFVVDASGSMA-L----NRMQNAKGAALKLLAESYT--CRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPCGGG 635 (653)
Q Consensus 563 ~v~~vvD~SgSM~-~----~r~~~ak~a~~~ll~~ay~--~rd~v~li~F~~~~a~~~lp~t~~~~~~~~~L~~l~~gG~ 635 (653)
.+++|+|.|--|. + .|.++-|.++..+....+. ....+|||...+....++..+|+.+..+...|..++-.|+
T Consensus 5 atvvliDNse~s~NgDy~ptRFeAQkd~ve~if~~K~ndnpEntiGli~~~~a~p~vlsT~T~~~gkilt~lhd~~~~g~ 84 (243)
T COG5148 5 ATVVLIDNSEASQNGDYLPTRFEAQKDAVESIFSKKFNDNPENTIGLIPLVQAQPNVLSTPTKQRGKILTFLHDIRLHGG 84 (243)
T ss_pred eEEEEEeChhhhhcCCCCcHHHHHHHHHHHHHHHHHhcCCccceeeeeecccCCcchhccchhhhhHHHHHhccccccCc
Confidence 5688899987662 3 7999999999999865432 4568999999888899999999999999999999999999
Q ss_pred CchHHHHHHHHHHHhh
Q 006254 636 SPLAHGLSMGWAKCGE 651 (653)
Q Consensus 636 Tpl~~gl~~a~~~l~~ 651 (653)
--++.+|..|.-.|..
T Consensus 85 a~~~~~lqiaql~lkh 100 (243)
T COG5148 85 ADIMRCLQIAQLILKH 100 (243)
T ss_pred chHHHHHHHHHHHHhc
Confidence 9999999999877764
No 471
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=93.19 E-value=0.072 Score=50.86 Aligned_cols=23 Identities=43% Similarity=0.546 Sum_probs=21.5
Q ss_pred EEEECCCCCHHHHHHHHHHhhCC
Q 006254 119 IAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (653)
|.|.|++|+|||++|+.|++.++
T Consensus 3 I~i~G~~GSGKstia~~la~~lg 25 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLS 25 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999875
No 472
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=93.17 E-value=0.073 Score=50.48 Aligned_cols=25 Identities=28% Similarity=0.271 Sum_probs=22.2
Q ss_pred CCceEEEECCCCCHHHHHHHHHHhh
Q 006254 115 EIGGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~ 139 (653)
...||||.|++|+|||++|..+...
T Consensus 13 ~g~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 13 GGIGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 4678999999999999999888774
No 473
>PRK14526 adenylate kinase; Provisional
Probab=93.15 E-value=0.069 Score=53.73 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=21.7
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
.++|.|+||+||||+++.|+..++
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~ 25 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELN 25 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998764
No 474
>cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 23 is very similar to Sec24. The Sec23 and Sec24
Probab=93.09 E-value=0.52 Score=49.21 Aligned_cols=44 Identities=20% Similarity=0.267 Sum_probs=35.7
Q ss_pred CceEEEEEeCCCCCChhHHHHHHHHHHHHHHhHcCCCCeEEEEEeec
Q 006254 561 GALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRG 607 (653)
Q Consensus 561 ~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~ay~~rd~v~li~F~~ 607 (653)
+-.++||||+|-. ...+..+|.++...| +....+.+||||+|+.
T Consensus 3 pp~~vFviDvs~~--~~el~~l~~sl~~~L-~~lP~~a~VGlITfd~ 46 (267)
T cd01478 3 PPVFLFVVDTCMD--EEELDALKESLIMSL-SLLPPNALVGLITFGT 46 (267)
T ss_pred CCEEEEEEECccC--HHHHHHHHHHHHHHH-HhCCCCCEEEEEEECC
Confidence 4568999999774 456888999998888 4568899999999953
No 475
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=93.08 E-value=0.11 Score=65.28 Aligned_cols=51 Identities=24% Similarity=0.229 Sum_probs=38.2
Q ss_pred CCCCCceechHHHHHHHHHh--cccCCCceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 91 FFPLAAVVGQDAIKTALLLG--AIDREIGGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 91 ~~~f~~IvGq~~~k~aL~~~--av~p~~~gVLL~GppGTGKT~lArala~~l~ 141 (653)
...+.++||.+..++.+... .-.....-|-|+|++|+||||+|+++++.+.
T Consensus 180 ~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~ 232 (1153)
T PLN03210 180 SNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLS 232 (1153)
T ss_pred CcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHh
Confidence 45688999999887777332 1122334499999999999999999987653
No 476
>PRK10436 hypothetical protein; Provisional
Probab=93.05 E-value=0.4 Score=53.94 Aligned_cols=48 Identities=23% Similarity=0.205 Sum_probs=30.5
Q ss_pred CCCceechHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 93 PLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 93 ~f~~IvGq~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~ 141 (653)
+|+++--.+.....+.. ++....|-||+.||+|+||||+..++...+.
T Consensus 196 ~L~~LG~~~~~~~~l~~-~~~~~~GliLvtGpTGSGKTTtL~a~l~~~~ 243 (462)
T PRK10436 196 DLETLGMTPAQLAQFRQ-ALQQPQGLILVTGPTGSGKTVTLYSALQTLN 243 (462)
T ss_pred CHHHcCcCHHHHHHHHH-HHHhcCCeEEEECCCCCChHHHHHHHHHhhC
Confidence 44444322333333433 3333457799999999999999888776664
No 477
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=93.05 E-value=0.086 Score=42.30 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=22.1
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-.+|.|+.|+||||+.-|+.-.+-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHc
Confidence 499999999999999999998875
No 478
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=93.05 E-value=0.22 Score=49.20 Aligned_cols=60 Identities=10% Similarity=0.087 Sum_probs=32.6
Q ss_pred cCceEEecccccCCH-HH-----HHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhccccccc
Q 006254 224 HRGVLYIDEINLLDE-GI-----SNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSAD 296 (653)
Q Consensus 224 ~~giL~IDEi~~l~~-~~-----~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~ 296 (653)
.+++++|||++..=+ .. ....+..+...+- ..+-||.+|- ....++..+++..+.++.+.
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh------------~g~diiliTQ-~~~~id~~ir~lve~~~~~~ 144 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRH------------YGWDIILITQ-SPSQIDKFIRDLVEYHYHCR 144 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCC------------TT-EEEEEES--GGGB-HHHHCCEEEEEEEE
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCc------------CCcEEEEEeC-CHHHHhHHHHHHHheEEEEE
Confidence 578999999987511 11 1233355555431 1234555554 77788888888777665554
No 479
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.02 E-value=0.19 Score=52.47 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=22.6
Q ss_pred CCceEEEECCCCCHHHHHHHHHHhhC
Q 006254 115 EIGGIAISGRRGTAKTVMARGLHAIL 140 (653)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l 140 (653)
..|++||.|..|+||.+++|..+-..
T Consensus 30 ~~Gh~LLvG~~GsGr~sl~rLaa~i~ 55 (268)
T PF12780_consen 30 PRGHALLVGVGGSGRQSLARLAAFIC 55 (268)
T ss_dssp TTEEEEEECTTTSCHHHHHHHHHHHT
T ss_pred CCCCeEEecCCCccHHHHHHHHHHHh
Confidence 46889999999999999999777654
No 480
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.00 E-value=0.077 Score=47.27 Aligned_cols=23 Identities=30% Similarity=0.303 Sum_probs=20.4
Q ss_pred EEEECCCCCHHHHHHHHHHhhCC
Q 006254 119 IAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (653)
|++.|++|+|||+|.+.+...-.
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 79999999999999999998653
No 481
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=92.98 E-value=0.048 Score=55.87 Aligned_cols=36 Identities=31% Similarity=0.408 Sum_probs=24.8
Q ss_pred EECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCC
Q 006254 121 ISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTC 157 (653)
Q Consensus 121 L~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~ 157 (653)
+.||+|+||||+++++.+.+.... ...+.+|=||..
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~-~~~~~vNLDPa~ 36 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNG-RDVYIVNLDPAV 36 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT--S-EEEEE--TT-
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcc-CCceEEEcchHh
Confidence 579999999999999999986432 344566777664
No 482
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=92.97 E-value=0.071 Score=51.71 Aligned_cols=22 Identities=32% Similarity=0.255 Sum_probs=19.1
Q ss_pred EEEECCCCCHHHHHHHHHHhhC
Q 006254 119 IAISGRRGTAKTVMARGLHAIL 140 (653)
Q Consensus 119 VLL~GppGTGKT~lArala~~l 140 (653)
+||.||||||||+++..++...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~ 23 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAG 23 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 7899999999999998876653
No 483
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=92.89 E-value=0.12 Score=55.22 Aligned_cols=27 Identities=33% Similarity=0.373 Sum_probs=24.0
Q ss_pred CCceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 115 EIGGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l~ 141 (653)
..+++||.|++|+||||++++|...++
T Consensus 143 ~~~nilI~G~tGSGKTTll~aL~~~i~ 169 (323)
T PRK13833 143 SRLNIVISGGTGSGKTTLANAVIAEIV 169 (323)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 356899999999999999999998873
No 484
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=92.85 E-value=0.073 Score=52.00 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=21.4
Q ss_pred EEEECCCCCHHHHHHHHHHhhCC
Q 006254 119 IAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (653)
|.|.|++|+||||+|+.|+..+.
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999874
No 485
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=92.82 E-value=0.033 Score=60.10 Aligned_cols=28 Identities=32% Similarity=0.501 Sum_probs=24.8
Q ss_pred CceEEEECCCCCHHHHHHHHHHhhCCCC
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAILPPI 143 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~~~ 143 (653)
..|+.|+|.-|||||+|.-.+...++++
T Consensus 114 PkGlYlYG~VGcGKTmLMDlFy~~~~~i 141 (467)
T KOG2383|consen 114 PKGLYLYGSVGCGKTMLMDLFYDALPPI 141 (467)
T ss_pred CceEEEecccCcchhHHHHHHhhcCCch
Confidence 5789999999999999999999877743
No 486
>PRK13975 thymidylate kinase; Provisional
Probab=92.80 E-value=0.081 Score=51.92 Aligned_cols=24 Identities=33% Similarity=0.310 Sum_probs=22.3
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|.|.|++|+||||+++.|++.+.
T Consensus 4 ~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 4 FIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999985
No 487
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=92.78 E-value=0.087 Score=52.42 Aligned_cols=25 Identities=20% Similarity=0.073 Sum_probs=22.5
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.-|+|.|.||+||||+|+.|+..++
T Consensus 4 ~~i~i~G~~G~GKst~a~~l~~~~~ 28 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHRA 28 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3589999999999999999999875
No 488
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=92.77 E-value=0.11 Score=53.94 Aligned_cols=26 Identities=35% Similarity=0.422 Sum_probs=23.0
Q ss_pred CCCceEEEECCCCCHHHHHHHHHHhh
Q 006254 114 REIGGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 114 p~~~gVLL~GppGTGKT~lArala~~ 139 (653)
+..+-|.|+|.+|+|||+||+.++..
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccc
Confidence 45667999999999999999999976
No 489
>PRK06851 hypothetical protein; Provisional
Probab=92.68 E-value=0.11 Score=56.61 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=22.5
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.-++|.|+|||||||+++.++..+.
T Consensus 215 ~~~~i~G~pG~GKstl~~~i~~~a~ 239 (367)
T PRK06851 215 NRYFLKGRPGTGKSTMLKKIAKAAE 239 (367)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHH
Confidence 4499999999999999999999874
No 490
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.59 E-value=0.19 Score=52.59 Aligned_cols=27 Identities=19% Similarity=0.311 Sum_probs=23.9
Q ss_pred CCceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 115 EIGGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l~ 141 (653)
..|=||+.||+|+||||...++.+++.
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN 150 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYIN 150 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHh
Confidence 456699999999999999999999875
No 491
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=92.57 E-value=0.28 Score=63.00 Aligned_cols=51 Identities=10% Similarity=0.136 Sum_probs=36.0
Q ss_pred CceEEecccccCCHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecC----CCCcccHHHHhh
Q 006254 225 RGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP----EEGVVREHLLDR 288 (653)
Q Consensus 225 ~giL~IDEi~~l~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp----~eg~l~~aLldR 288 (653)
+.||||||+.-++......|+..+.... ++++|||=.+. ..|..-..|..+
T Consensus 1063 ~~llIVDEaSMv~~~~m~~Ll~~~~~~g-------------arvVLVGD~~QL~sV~aG~~f~~l~~~ 1117 (1747)
T PRK13709 1063 NTLFLLDESSMVGNTDMARAYALIAAGG-------------GRAVSSGDTDQLQAIAPGQPFRLMQTR 1117 (1747)
T ss_pred CcEEEEEccccccHHHHHHHHHhhhcCC-------------CEEEEecchHhcCCCCCChHHHHHHHh
Confidence 4799999999999999999999887421 25678886553 234443455544
No 492
>PRK01184 hypothetical protein; Provisional
Probab=92.57 E-value=0.092 Score=51.15 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=18.2
Q ss_pred eEEEECCCCCHHHHHHHHHHhhC
Q 006254 118 GIAISGRRGTAKTVMARGLHAIL 140 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l 140 (653)
-|+|.|+||+||||+++ ++..+
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~ 24 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREM 24 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHc
Confidence 37899999999999998 45544
No 493
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.50 E-value=0.24 Score=49.83 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=20.2
Q ss_pred ceEEEECCCCCHHHHHHHHHHh
Q 006254 117 GGIAISGRRGTAKTVMARGLHA 138 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~ 138 (653)
+.++|.||.|+|||++.|.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 5699999999999999999984
No 494
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=92.49 E-value=0.26 Score=55.19 Aligned_cols=42 Identities=26% Similarity=0.088 Sum_probs=29.9
Q ss_pred hHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCC
Q 006254 100 QDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPI 143 (653)
Q Consensus 100 q~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~ 143 (653)
|+++..++.-..-. .+..+|.-|+|+|||.++-.++..+...
T Consensus 41 Q~~al~a~~~~~~~--~~~gvivlpTGaGKT~va~~~~~~~~~~ 82 (442)
T COG1061 41 QEEALDALVKNRRT--ERRGVIVLPTGAGKTVVAAEAIAELKRS 82 (442)
T ss_pred HHHHHHHHHhhccc--CCceEEEeCCCCCHHHHHHHHHHHhcCC
Confidence 34445555432221 5678889999999999999999988753
No 495
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=92.48 E-value=0.069 Score=50.34 Aligned_cols=21 Identities=29% Similarity=0.308 Sum_probs=19.4
Q ss_pred EECCCCCHHHHHHHHHHhhCC
Q 006254 121 ISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 121 L~GppGTGKT~lArala~~l~ 141 (653)
|.||||+||||+|+.|+..+.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~ 21 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG 21 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT
T ss_pred CcCCCCCChHHHHHHHHHhcC
Confidence 689999999999999999874
No 496
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.43 E-value=0.095 Score=53.49 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=23.6
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCCCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILPPI 143 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~~~ 143 (653)
=|-|.||+|||||||.|.|+.+..+-
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~p~ 56 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEKPT 56 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 49999999999999999999998753
No 497
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=92.39 E-value=0.17 Score=50.57 Aligned_cols=23 Identities=35% Similarity=0.339 Sum_probs=20.0
Q ss_pred EEEECCCCCHHHHHHHHHHhhCC
Q 006254 119 IAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (653)
++|+||+|||||.+|-.+++..+
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~g 26 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKTG 26 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH-
T ss_pred EEEECCCCCChhHHHHHHHHHhC
Confidence 68999999999999999999885
No 498
>PRK12338 hypothetical protein; Provisional
Probab=92.35 E-value=0.1 Score=55.57 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=22.8
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.-|+|.|.||+||||+|+.|+..++
T Consensus 5 ~ii~i~G~sGsGKST~a~~la~~l~ 29 (319)
T PRK12338 5 YVILIGSASGIGKSTIASELARTLN 29 (319)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC
Confidence 3489999999999999999999986
No 499
>PLN02674 adenylate kinase
Probab=92.34 E-value=0.1 Score=53.58 Aligned_cols=26 Identities=12% Similarity=0.061 Sum_probs=23.5
Q ss_pred CceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~ 141 (653)
...|+|.|+||+||+|+++.|+..++
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~ 56 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYC 56 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcC
Confidence 45699999999999999999999875
No 500
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=92.18 E-value=0.82 Score=58.35 Aligned_cols=172 Identities=22% Similarity=0.278 Sum_probs=94.0
Q ss_pred CCCCCceechHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccccccccc
Q 006254 91 FFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAE 170 (653)
Q Consensus 91 ~~~f~~IvGq~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~ 170 (653)
..|..+.+-++..+..+... ..+++++|++|||||.++..........++..
T Consensus 107 ~v~t~dt~r~~~~~~~~~~~-----~k~~~~~g~~g~gk~~~~~~~~~~~~~~~~~~----------------------- 158 (1395)
T KOG3595|consen 107 LVPTIDTVRYDRLLKLLLAH-----GKPVLLVGPTGTGKTVLVLSELRSLQDREVYL----------------------- 158 (1395)
T ss_pred ecCccceeeHHHHHHHHHHh-----CCeEEEEcCCCCCeeeehHHHHHhcccchheE-----------------------
Confidence 34555666666666666552 37899999999999999988776653211100
Q ss_pred ccccccccccccCCCeEeCCCCCcccceeee-cchhhhhccCCccccccccccccCceEEecccccC------CHHHHHH
Q 006254 171 YDTAGNLKTQIARSPFVQIPLGVTEDRLIGS-VDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLL------DEGISNL 243 (653)
Q Consensus 171 ~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~-~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l------~~~~~~~ 243 (653)
+..+..++. ..+.. ++....-+.+.. +.|+... .-++|+||||.= .......
T Consensus 159 ----------------~~fs~~ts~-~~~q~~~~~~~~k~~~~~-~~~~~~~---~~~~f~ddinmp~~~~yg~q~~~~~ 217 (1395)
T KOG3595|consen 159 ----------------LNFSSVTSS-ELLQEIIESKLDKRRSGN-YGPPLGK---KLVLFVDDINMPALDKYGDQPPIEL 217 (1395)
T ss_pred ----------------EeeeeeccH-HHHHHHHHHHHHHhcccC-CCCCCCc---eeEEEEeccCCchhhhcCCccHHHH
Confidence 111111111 11111 110000000111 2222211 238999999853 3345566
Q ss_pred HHHHHHcCceEEeeCCeeEEeecCcEEEEEecC-CCC--cccHHHHhhhcccccccCCCCHhhHHHHHHHHHHH
Q 006254 244 LLNVLTEGVNIVEREGISFKHPCKPLLIATYNP-EEG--VVREHLLDRIAINLSADLPMTFEDRVAAVGIATQF 314 (653)
Q Consensus 244 Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp-~eg--~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~ 314 (653)
|.+.++.+.. +.+.-.+...-.++.++++||| ..| .+.+-|.+.|.++ .++.| +.+....|......+
T Consensus 218 lrq~~e~~g~-~~~~~~~~~~i~~i~~~~a~~~~~~gr~~i~~r~~r~f~~~-~~~~~-~~~sl~~if~~~~~~ 288 (1395)
T KOG3595|consen 218 LRQMLEHGGF-YDRKKSEWVEIENVQLVGAMNPPGGGRNDITERFLRHFLIV-SLNYP-SQESLTQIFNTILTG 288 (1395)
T ss_pred HHHHHHhcee-ecccccceeEEeeeEEEeecCCCCCccCcccHHHHHHeeeE-eeCCC-ChhhHHHHHHHHHhc
Confidence 7777776543 2222233333457899999997 222 4677888888777 77765 666666666544433
Done!