Query 006254
Match_columns 653
No_of_seqs 523 out of 3185
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 20:06:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006254.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006254hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1g8p_A Magnesium-chelatase 38 100.0 8.5E-38 2.9E-42 332.7 27.1 313 89-410 18-330 (350)
2 2r44_A Uncharacterized protein 100.0 2.4E-28 8.3E-33 258.8 21.0 259 91-408 23-303 (331)
3 3f8t_A Predicted ATPase involv 100.0 9.9E-28 3.4E-32 260.6 18.4 239 97-404 215-485 (506)
4 3nbx_X ATPase RAVA; AAA+ ATPas 99.9 1.7E-26 5.8E-31 257.4 18.6 260 95-408 22-291 (500)
5 3f9v_A Minichromosome maintena 99.9 6.8E-27 2.3E-31 266.7 14.2 260 95-403 295-588 (595)
6 1ojl_A Transcriptional regulat 99.9 3.3E-24 1.1E-28 225.3 12.9 232 95-396 2-246 (304)
7 2bjv_A PSP operon transcriptio 99.9 7E-24 2.4E-28 217.5 14.3 233 92-395 3-250 (265)
8 1ny5_A Transcriptional regulat 99.9 1.8E-23 6E-28 226.9 16.1 233 94-397 136-382 (387)
9 3dzd_A Transcriptional regulat 99.9 5.2E-23 1.8E-27 221.7 11.5 222 95-379 129-358 (368)
10 3k1j_A LON protease, ATP-depen 99.9 1.7E-21 6E-26 222.9 19.1 285 88-401 34-374 (604)
11 4b4t_J 26S protease regulatory 99.8 5.4E-21 1.8E-25 206.0 12.3 218 88-404 141-391 (405)
12 3pfi_A Holliday junction ATP-d 99.8 3.6E-20 1.2E-24 196.2 17.7 224 85-401 19-253 (338)
13 4b4t_I 26S protease regulatory 99.8 1.1E-20 3.9E-25 204.2 11.8 219 88-405 175-426 (437)
14 4b4t_H 26S protease regulatory 99.8 1.9E-20 6.4E-25 204.3 13.0 220 88-406 202-454 (467)
15 4b4t_K 26S protease regulatory 99.8 1E-19 3.6E-24 198.4 14.3 221 88-406 165-418 (428)
16 4b4t_M 26S protease regulatory 99.8 1.1E-19 3.7E-24 198.4 13.6 220 88-405 174-425 (434)
17 4b4t_L 26S protease subunit RP 99.8 2E-19 6.8E-24 196.5 14.4 221 88-406 174-426 (437)
18 1ofh_A ATP-dependent HSL prote 99.8 4.2E-19 1.5E-23 184.7 13.8 242 95-402 15-299 (310)
19 3vfd_A Spastin; ATPase, microt 99.8 9.8E-19 3.4E-23 189.5 17.2 220 87-401 107-364 (389)
20 1um8_A ATP-dependent CLP prote 99.8 3.2E-19 1.1E-23 192.3 12.9 248 96-406 22-369 (376)
21 3h4m_A Proteasome-activating n 99.8 2.8E-19 9.6E-24 184.7 9.6 223 88-406 10-262 (285)
22 3uk6_A RUVB-like 2; hexameric 99.8 4.5E-18 1.5E-22 182.0 18.7 145 225-407 190-335 (368)
23 3hws_A ATP-dependent CLP prote 99.8 2.9E-19 9.9E-24 191.8 8.2 240 96-399 16-346 (363)
24 1lv7_A FTSH; alpha/beta domain 99.8 3.8E-18 1.3E-22 173.9 15.6 218 89-405 6-255 (257)
25 2c9o_A RUVB-like 1; hexameric 99.8 5.4E-18 1.9E-22 187.6 17.9 132 226-405 297-440 (456)
26 1hqc_A RUVB; extended AAA-ATPa 99.8 3E-18 1E-22 179.9 14.9 220 88-402 5-238 (324)
27 3eie_A Vacuolar protein sortin 99.8 7.3E-19 2.5E-23 185.7 9.8 159 88-310 11-195 (322)
28 2qp9_X Vacuolar protein sortin 99.8 3.6E-18 1.2E-22 183.0 14.6 200 88-383 44-269 (355)
29 2qz4_A Paraplegin; AAA+, SPG7, 99.8 2E-18 6.9E-23 175.6 10.9 220 91-407 2-254 (262)
30 3pvs_A Replication-associated 99.7 2.7E-18 9.2E-23 189.4 11.4 218 87-400 18-242 (447)
31 3b9p_A CG5977-PA, isoform A; A 99.7 2.4E-17 8.2E-22 171.3 17.8 222 88-400 14-270 (297)
32 1xwi_A SKD1 protein; VPS4B, AA 99.7 1.9E-17 6.7E-22 175.0 17.2 160 88-310 5-190 (322)
33 2r62_A Cell division protease 99.7 9.5E-20 3.2E-24 186.7 -0.6 223 88-408 4-259 (268)
34 3d8b_A Fidgetin-like protein 1 99.7 1.5E-17 5.1E-22 178.3 16.0 160 88-310 77-262 (357)
35 3syl_A Protein CBBX; photosynt 99.7 7.8E-18 2.7E-22 175.7 12.2 213 96-396 32-280 (309)
36 4fcw_A Chaperone protein CLPB; 99.7 1.2E-17 4E-22 174.4 12.6 214 95-377 17-273 (311)
37 3n70_A Transport activator; si 99.7 6.6E-18 2.3E-22 157.6 9.6 135 96-300 2-144 (145)
38 2zan_A Vacuolar protein sortin 99.7 9.2E-17 3.2E-21 177.2 17.0 160 88-310 127-312 (444)
39 2ce7_A Cell division protein F 99.7 2.6E-17 9.1E-22 182.1 12.6 216 90-404 11-258 (476)
40 3pxi_A Negative regulator of g 99.7 4.6E-17 1.6E-21 191.0 15.3 203 95-370 491-715 (758)
41 3cf0_A Transitional endoplasmi 99.7 2.3E-17 7.8E-22 172.7 8.5 158 88-310 8-197 (301)
42 3hu3_A Transitional endoplasmi 99.7 2.7E-17 9.1E-22 183.2 9.5 156 90-310 199-383 (489)
43 3co5_A Putative two-component 99.7 1E-17 3.6E-22 156.0 5.0 132 96-300 5-142 (143)
44 1r6b_X CLPA protein; AAA+, N-t 99.7 2.8E-16 9.6E-21 184.4 17.5 221 95-378 458-711 (758)
45 2dhr_A FTSH; AAA+ protein, hex 99.7 6.8E-17 2.3E-21 179.8 10.8 218 90-406 26-275 (499)
46 1g41_A Heat shock protein HSLU 99.6 2.9E-15 9.8E-20 163.9 18.2 158 221-400 246-431 (444)
47 1sxj_D Activator 1 41 kDa subu 99.6 2.7E-15 9.2E-20 159.0 17.1 226 86-400 28-261 (353)
48 2chg_A Replication factor C sm 99.6 5E-15 1.7E-19 144.9 17.7 214 89-400 11-224 (226)
49 3m6a_A ATP-dependent protease 99.6 2.9E-16 9.9E-21 177.4 9.4 235 94-400 80-339 (543)
50 3cf2_A TER ATPase, transitiona 99.6 9.7E-17 3.3E-21 186.9 4.3 156 89-309 471-658 (806)
51 1qvr_A CLPB protein; coiled co 99.6 1.4E-15 4.8E-20 180.7 13.5 215 95-376 558-813 (854)
52 1ixz_A ATP-dependent metallopr 99.6 4.9E-16 1.7E-20 157.9 8.2 213 88-399 9-253 (254)
53 1in4_A RUVB, holliday junction 99.6 1.4E-14 4.7E-19 153.8 19.6 222 89-402 19-250 (334)
54 3bos_A Putative DNA replicatio 99.6 2E-14 6.8E-19 143.2 18.6 208 91-400 24-241 (242)
55 1iy2_A ATP-dependent metallopr 99.6 1.7E-15 5.8E-20 156.4 9.0 212 89-399 34-277 (278)
56 3pxg_A Negative regulator of g 99.6 8E-15 2.7E-19 162.7 14.7 208 89-387 174-390 (468)
57 3u61_B DNA polymerase accessor 99.6 1.3E-14 4.5E-19 152.6 14.2 214 87-399 18-234 (324)
58 2v1u_A Cell division control p 99.6 5.1E-14 1.7E-18 150.4 18.4 246 91-402 15-276 (387)
59 1iqp_A RFCS; clamp loader, ext 99.5 1.3E-14 4.4E-19 151.8 11.5 215 87-399 17-231 (327)
60 3cf2_A TER ATPase, transitiona 99.5 1.8E-15 6.2E-20 176.2 5.4 157 89-310 198-383 (806)
61 2x8a_A Nuclear valosin-contain 99.5 1.2E-14 4.1E-19 150.1 10.3 157 89-310 4-189 (274)
62 1l8q_A Chromosomal replication 99.5 1.2E-14 3.9E-19 153.2 10.0 218 90-402 6-240 (324)
63 2z4s_A Chromosomal replication 99.5 2.6E-14 8.9E-19 157.3 13.2 220 90-402 100-332 (440)
64 1fnn_A CDC6P, cell division co 99.5 1.4E-13 4.8E-18 147.4 17.8 246 91-404 13-276 (389)
65 1njg_A DNA polymerase III subu 99.5 2.2E-13 7.6E-18 134.6 17.7 232 89-400 17-249 (250)
66 3pxi_A Negative regulator of g 99.5 9.1E-14 3.1E-18 163.1 15.1 210 89-386 174-389 (758)
67 1r6b_X CLPA protein; AAA+, N-t 99.5 1.4E-13 4.9E-18 161.4 16.2 232 90-402 181-433 (758)
68 3rag_A Uncharacterized protein 99.5 2.8E-14 9.7E-19 142.6 8.3 92 558-651 131-227 (242)
69 2qby_B CDC6 homolog 3, cell di 99.5 1.5E-13 5.2E-18 147.2 12.8 133 226-403 135-271 (384)
70 2chq_A Replication factor C sm 99.5 9.8E-14 3.3E-18 144.5 10.7 215 87-399 9-223 (319)
71 1jr3_A DNA polymerase III subu 99.5 2.4E-12 8.1E-17 137.3 20.9 232 88-399 9-241 (373)
72 3t15_A Ribulose bisphosphate c 99.5 3.4E-14 1.2E-18 148.0 5.7 137 116-309 36-195 (293)
73 2qby_A CDC6 homolog 1, cell di 99.5 7.9E-13 2.7E-17 140.9 16.4 242 91-403 16-273 (386)
74 1sxj_A Activator 1 95 kDa subu 99.4 7.8E-13 2.7E-17 148.4 16.5 216 88-403 32-275 (516)
75 2x31_A Magnesium-chelatase 60 99.4 1.8E-13 6E-18 132.6 9.5 94 558-651 2-95 (189)
76 1sxj_B Activator 1 37 kDa subu 99.4 1.9E-12 6.4E-17 135.0 16.3 216 88-400 14-229 (323)
77 1d2n_A N-ethylmaleimide-sensit 99.4 1.4E-13 4.6E-18 141.4 4.8 205 94-399 32-261 (272)
78 1sxj_C Activator 1 40 kDa subu 99.4 6.1E-13 2.1E-17 141.1 9.9 222 85-399 15-236 (340)
79 1qvr_A CLPB protein; coiled co 99.4 5.8E-13 2E-17 158.2 10.6 213 89-385 164-395 (854)
80 1jbk_A CLPB protein; beta barr 99.4 2.5E-13 8.4E-18 129.6 3.7 160 90-308 17-194 (195)
81 3te6_A Regulatory protein SIR3 99.3 4.2E-12 1.4E-16 133.4 13.1 262 97-403 22-316 (318)
82 2p65_A Hypothetical protein PF 99.3 4.2E-13 1.4E-17 127.9 3.8 155 89-298 16-186 (187)
83 1sxj_E Activator 1 40 kDa subu 99.3 2.7E-11 9.3E-16 128.4 17.0 220 87-379 6-241 (354)
84 1ypw_A Transitional endoplasmi 99.3 9.1E-14 3.1E-18 163.7 -2.9 156 89-309 471-658 (806)
85 4b4t_W RPN10, 26S proteasome r 99.3 4.6E-12 1.6E-16 129.4 9.5 90 563-652 5-101 (268)
86 2x5n_A SPRPN10, 26S proteasome 99.3 1.2E-11 4E-16 121.0 9.5 90 562-651 3-99 (192)
87 1ypw_A Transitional endoplasmi 99.2 1.8E-11 6.2E-16 144.2 6.2 156 89-309 198-382 (806)
88 1atz_A VON willebrand factor; 99.1 3.4E-10 1.2E-14 109.5 13.0 91 560-651 4-99 (189)
89 2xgg_A Microneme protein 2; A/ 99.1 5.9E-10 2E-14 106.9 12.6 88 561-649 17-111 (178)
90 3ibs_A Conserved hypothetical 99.1 1.9E-10 6.6E-15 113.4 8.0 91 558-651 8-107 (218)
91 4fx5_A VON willebrand factor t 99.0 5.7E-10 2E-14 123.3 11.7 91 559-651 75-175 (464)
92 1a5t_A Delta prime, HOLB; zinc 99.0 2.8E-09 9.7E-14 112.8 16.6 167 99-308 6-176 (334)
93 1q0p_A Complement factor B; VO 99.0 1.3E-09 4.5E-14 107.6 12.3 91 559-650 13-114 (223)
94 3n2n_F Anthrax toxin receptor 99.0 5.3E-10 1.8E-14 107.2 8.2 88 560-649 6-96 (185)
95 1w5s_A Origin recognition comp 99.0 1.5E-09 5.1E-14 117.0 12.3 245 92-403 19-294 (412)
96 1shu_X Anthrax toxin receptor 99.0 7.1E-10 2.4E-14 106.0 8.6 87 560-651 5-97 (182)
97 1ijb_A VON willebrand factor; 99.0 3.6E-09 1.2E-13 103.7 12.2 88 561-649 13-106 (202)
98 1mf7_A Integrin alpha M; cell 98.9 1.1E-09 3.8E-14 106.2 7.9 89 560-649 4-95 (194)
99 4akg_A Glutathione S-transfera 98.9 1.6E-09 5.5E-14 139.8 10.8 85 225-312 1337-1431(2695)
100 2odp_A Complement C2; C3/C5 co 98.9 6.3E-09 2.2E-13 116.1 12.1 91 559-650 7-108 (509)
101 4hqo_A Sporozoite surface prot 98.9 4.8E-09 1.6E-13 107.4 10.1 92 559-651 16-118 (266)
102 3zqk_A VON willebrand factor; 98.8 7.4E-09 2.5E-13 101.2 9.7 88 560-648 20-113 (199)
103 1rrk_A Complement factor B; BB 98.8 1.1E-08 3.9E-13 113.5 12.3 88 562-650 2-100 (497)
104 2gno_A DNA polymerase III, gam 98.8 1.6E-08 5.4E-13 105.8 12.7 150 99-310 1-150 (305)
105 4akg_A Glutathione S-transfera 98.8 5.2E-08 1.8E-12 126.0 19.8 142 115-314 644-795 (2695)
106 3hrz_D Complement factor B; se 98.8 1.3E-08 4.4E-13 118.7 12.6 91 558-649 240-341 (741)
107 1mjn_A Integrin alpha-L; rossm 98.8 9.2E-09 3.1E-13 98.7 9.2 88 561-649 2-92 (179)
108 4hqf_A Thrombospondin-related 98.8 7.1E-09 2.4E-13 106.9 8.9 90 560-651 20-121 (281)
109 1v7p_C Integrin alpha-2; snake 98.8 3.5E-08 1.2E-12 96.2 11.5 85 561-648 6-96 (200)
110 1n3y_A Integrin alpha-X; alpha 98.7 6.7E-09 2.3E-13 100.7 4.7 89 560-649 8-99 (198)
111 2b2x_A Integrin alpha-1; compu 98.7 8.5E-08 2.9E-12 95.1 11.1 86 561-649 22-113 (223)
112 1pt6_A Integrin alpha-1; cell 98.7 1.1E-07 3.6E-12 93.7 11.3 86 561-649 7-98 (213)
113 3ec2_A DNA replication protein 98.6 1.2E-08 4E-13 97.7 4.0 52 89-140 4-62 (180)
114 3vkg_A Dynein heavy chain, cyt 98.6 1E-07 3.4E-12 124.0 13.4 146 115-309 1303-1466(3245)
115 2ww8_A RRGA, cell WALL surface 98.5 1.4E-07 4.8E-12 111.4 8.9 94 558-651 221-372 (893)
116 2w58_A DNAI, primosome compone 98.5 1.8E-08 6.2E-13 98.0 0.2 52 90-141 20-79 (202)
117 2kjq_A DNAA-related protein; s 98.4 5.7E-07 1.9E-11 83.9 9.4 60 225-295 84-145 (149)
118 3vkg_A Dynein heavy chain, cyt 98.3 2.7E-06 9.4E-11 110.9 14.7 141 116-314 604-755 (3245)
119 1yvr_A RO autoantigen, 60-kDa 98.3 3.4E-07 1.2E-11 103.1 4.6 86 559-648 366-457 (538)
120 1jey_B KU80; double-strand DNA 98.2 2.5E-06 8.6E-11 96.5 9.6 89 562-651 8-120 (565)
121 3k6s_A Integrin alpha-X; cell 98.2 9.4E-07 3.2E-11 107.0 5.7 88 561-649 130-220 (1095)
122 2qgz_A Helicase loader, putati 98.1 4.3E-07 1.5E-11 95.0 1.3 50 91-140 120-176 (308)
123 1u0j_A DNA replication protein 97.9 2.9E-05 9.8E-10 79.2 9.4 28 114-141 102-129 (267)
124 1tue_A Replication protein E1; 97.9 1.5E-05 5.2E-10 78.0 6.9 28 114-141 56-83 (212)
125 2qen_A Walker-type ATPase; unk 97.7 4E-05 1.4E-09 79.9 7.8 46 94-141 11-56 (350)
126 2nvo_A RO sixty-related protei 97.7 1.9E-05 6.5E-10 88.7 5.3 93 552-648 351-453 (535)
127 2orw_A Thymidine kinase; TMTK, 97.7 5.2E-05 1.8E-09 73.0 6.7 58 225-296 77-137 (184)
128 2fna_A Conserved hypothetical 97.7 3.7E-05 1.3E-09 80.3 5.9 45 93-141 11-55 (357)
129 2r2a_A Uncharacterized protein 97.6 0.00015 5.2E-09 70.7 8.5 61 224-297 87-152 (199)
130 1jr3_D DNA polymerase III, del 97.5 0.0002 6.8E-09 75.4 9.6 126 225-401 77-208 (343)
131 1jey_A KU70; double-strand DNA 97.5 0.0002 6.8E-09 81.6 9.8 89 562-651 36-156 (609)
132 3upu_A ATP-dependent DNA helic 97.3 0.00012 4.1E-09 80.6 4.5 53 88-141 17-70 (459)
133 2iue_A Pactolus I-domain; memb 97.2 0.00084 2.9E-08 66.0 8.0 74 561-635 3-78 (212)
134 3e1s_A Exodeoxyribonuclease V, 97.0 0.00074 2.5E-08 76.4 6.8 26 116-141 204-229 (574)
135 1ye8_A Protein THEP1, hypothet 97.0 0.0012 4.3E-08 62.9 7.2 24 118-141 2-25 (178)
136 2vhj_A Ntpase P4, P4; non- hyd 96.7 0.0018 6.3E-08 67.6 6.0 23 117-139 124-146 (331)
137 2b8t_A Thymidine kinase; deoxy 96.6 0.0032 1.1E-07 62.4 7.2 27 225-251 90-116 (223)
138 3jvv_A Twitching mobility prot 96.4 0.0096 3.3E-07 63.2 9.7 26 116-141 123-148 (356)
139 1w36_D RECD, exodeoxyribonucle 96.4 0.0063 2.2E-07 69.2 8.8 25 116-140 164-188 (608)
140 3cmw_A Protein RECA, recombina 96.1 0.0039 1.3E-07 78.0 5.4 22 119-140 1085-1106(1706)
141 1qhx_A CPT, protein (chloramph 95.9 0.004 1.4E-07 58.4 3.3 24 118-141 5-28 (178)
142 2r8r_A Sensor protein; KDPD, P 95.7 0.015 5.1E-07 57.6 6.5 26 116-141 6-31 (228)
143 2i3b_A HCR-ntpase, human cance 95.6 0.0085 2.9E-07 57.7 4.3 24 118-141 3-26 (189)
144 1kag_A SKI, shikimate kinase I 95.6 0.0062 2.1E-07 56.7 3.2 25 117-141 5-29 (173)
145 3kb2_A SPBC2 prophage-derived 95.5 0.0058 2E-07 56.6 2.7 24 118-141 3-26 (173)
146 2fz4_A DNA repair protein RAD2 95.4 0.021 7.1E-07 56.8 6.8 25 117-141 109-133 (237)
147 1xx6_A Thymidine kinase; NESG, 95.3 0.035 1.2E-06 53.5 7.6 28 225-252 82-109 (191)
148 1via_A Shikimate kinase; struc 95.2 0.008 2.7E-07 56.3 2.8 24 118-141 6-29 (175)
149 3trf_A Shikimate kinase, SK; a 95.2 0.0082 2.8E-07 56.6 2.8 25 117-141 6-30 (185)
150 1ly1_A Polynucleotide kinase; 95.1 0.0097 3.3E-07 55.5 3.0 21 118-138 4-24 (181)
151 3vaa_A Shikimate kinase, SK; s 95.0 0.01 3.4E-07 57.1 2.8 26 116-141 25-50 (199)
152 1zuh_A Shikimate kinase; alpha 94.9 0.015 5.1E-07 54.0 3.7 25 117-141 8-32 (168)
153 3lw7_A Adenylate kinase relate 94.9 0.012 4.2E-07 54.1 3.0 23 118-141 3-25 (179)
154 2iyv_A Shikimate kinase, SK; t 94.9 0.011 3.9E-07 55.7 2.8 24 118-141 4-27 (184)
155 3iij_A Coilin-interacting nucl 94.8 0.012 4.1E-07 55.3 2.8 25 117-141 12-36 (180)
156 1kht_A Adenylate kinase; phosp 94.8 0.012 4E-07 55.5 2.6 24 118-141 5-28 (192)
157 1nks_A Adenylate kinase; therm 94.8 0.011 3.6E-07 55.8 2.3 24 118-141 3-26 (194)
158 3t61_A Gluconokinase; PSI-biol 94.8 0.012 4.2E-07 56.4 2.7 25 117-141 19-43 (202)
159 1e6c_A Shikimate kinase; phosp 94.8 0.013 4.6E-07 54.3 2.8 24 118-141 4-27 (173)
160 3dl0_A Adenylate kinase; phosp 94.7 0.015 5E-07 56.4 3.2 24 118-141 2-25 (216)
161 2rhm_A Putative kinase; P-loop 94.7 0.012 4.1E-07 55.7 2.4 25 117-141 6-30 (193)
162 2vli_A Antibiotic resistance p 94.7 0.012 4.2E-07 55.1 2.4 24 118-141 7-30 (183)
163 2ze6_A Isopentenyl transferase 94.7 0.014 4.7E-07 58.7 2.8 24 118-141 3-26 (253)
164 3cm0_A Adenylate kinase; ATP-b 94.7 0.014 4.8E-07 55.0 2.8 24 118-141 6-29 (186)
165 1tev_A UMP-CMP kinase; ploop, 94.6 0.015 5.1E-07 54.9 2.8 24 118-141 5-28 (196)
166 3uie_A Adenylyl-sulfate kinase 94.6 0.014 4.9E-07 56.0 2.6 26 116-141 25-50 (200)
167 2cdn_A Adenylate kinase; phosp 94.5 0.016 5.3E-07 55.6 2.8 24 118-141 22-45 (201)
168 1y63_A LMAJ004144AAA protein; 94.5 0.022 7.5E-07 54.0 3.8 25 116-140 10-34 (184)
169 1zp6_A Hypothetical protein AT 94.5 0.013 4.6E-07 55.4 2.3 24 117-140 10-33 (191)
170 3fb4_A Adenylate kinase; psych 94.5 0.015 5.3E-07 56.2 2.8 24 118-141 2-25 (216)
171 2plr_A DTMP kinase, probable t 94.5 0.016 5.4E-07 55.6 2.8 24 118-141 6-29 (213)
172 4eun_A Thermoresistant glucoki 94.4 0.016 5.5E-07 55.7 2.6 25 117-141 30-54 (200)
173 2qor_A Guanylate kinase; phosp 94.4 0.02 6.9E-07 55.2 3.2 25 117-141 13-37 (204)
174 1kgd_A CASK, peripheral plasma 94.4 0.021 7.1E-07 54.0 3.3 25 117-141 6-30 (180)
175 1knq_A Gluconate kinase; ALFA/ 94.4 0.017 5.8E-07 54.0 2.6 25 117-141 9-33 (175)
176 2pt5_A Shikimate kinase, SK; a 94.4 0.018 6.3E-07 53.2 2.8 24 118-141 2-25 (168)
177 2jaq_A Deoxyguanosine kinase; 94.4 0.018 6.1E-07 54.8 2.8 24 118-141 2-25 (205)
178 2c95_A Adenylate kinase 1; tra 94.4 0.016 5.6E-07 54.8 2.5 25 117-141 10-34 (196)
179 2bwj_A Adenylate kinase 5; pho 94.3 0.016 5.6E-07 54.9 2.4 25 117-141 13-37 (199)
180 3tr0_A Guanylate kinase, GMP k 94.3 0.021 7.3E-07 54.5 3.2 24 118-141 9-32 (205)
181 2j9r_A Thymidine kinase; TK1, 94.3 0.13 4.6E-06 50.3 8.9 27 226-252 103-129 (214)
182 3cmu_A Protein RECA, recombina 94.2 0.045 1.5E-06 69.5 6.6 25 116-140 1427-1451(2050)
183 1aky_A Adenylate kinase; ATP:A 94.2 0.02 6.9E-07 55.8 2.8 25 117-141 5-29 (220)
184 1qf9_A UMP/CMP kinase, protein 94.2 0.018 6.2E-07 54.2 2.4 24 118-141 8-31 (194)
185 1zd8_A GTP:AMP phosphotransfer 94.2 0.021 7.2E-07 56.0 2.9 25 117-141 8-32 (227)
186 1gvn_B Zeta; postsegregational 94.1 0.021 7E-07 58.6 2.7 24 118-141 35-58 (287)
187 1ex7_A Guanylate kinase; subst 94.1 0.028 9.4E-07 54.0 3.4 25 117-141 2-26 (186)
188 1ukz_A Uridylate kinase; trans 94.1 0.026 8.9E-07 54.0 3.2 24 118-141 17-40 (203)
189 1zak_A Adenylate kinase; ATP:A 94.0 0.02 6.8E-07 55.9 2.4 25 117-141 6-30 (222)
190 1cke_A CK, MSSA, protein (cyti 94.0 0.023 7.9E-07 55.3 2.8 25 117-141 6-30 (227)
191 3tau_A Guanylate kinase, GMP k 94.0 0.032 1.1E-06 54.1 3.7 27 116-142 8-34 (208)
192 2j41_A Guanylate kinase; GMP, 93.9 0.025 8.7E-07 54.0 2.8 25 117-141 7-31 (207)
193 2nut_A Protein transport prote 93.9 0.11 3.7E-06 60.6 8.5 89 559-651 130-281 (769)
194 2p5t_B PEZT; postsegregational 93.9 0.021 7E-07 57.3 2.2 24 118-141 34-57 (253)
195 1ak2_A Adenylate kinase isoenz 93.8 0.026 9E-07 55.6 2.8 25 117-141 17-41 (233)
196 3fcs_B Integrin beta-3; beta p 93.8 0.046 1.6E-06 62.8 5.0 76 559-635 109-215 (690)
197 2v54_A DTMP kinase, thymidylat 93.7 0.032 1.1E-06 53.2 3.1 25 117-141 5-29 (204)
198 3sr0_A Adenylate kinase; phosp 93.7 0.028 9.7E-07 54.8 2.8 23 119-141 3-25 (206)
199 1z6t_A APAF-1, apoptotic prote 93.7 0.055 1.9E-06 60.7 5.5 48 91-138 120-169 (591)
200 3tlx_A Adenylate kinase 2; str 93.7 0.029 9.8E-07 55.9 2.8 25 117-141 30-54 (243)
201 2z0h_A DTMP kinase, thymidylat 93.7 0.028 9.5E-07 53.3 2.6 22 119-140 3-24 (197)
202 2pbr_A DTMP kinase, thymidylat 93.7 0.027 9.3E-07 53.0 2.6 22 119-140 3-24 (195)
203 3be4_A Adenylate kinase; malar 93.7 0.028 9.7E-07 54.7 2.8 25 117-141 6-30 (217)
204 2wwf_A Thymidilate kinase, put 93.7 0.025 8.4E-07 54.4 2.3 25 117-141 11-35 (212)
205 2bbw_A Adenylate kinase 4, AK4 93.7 0.029 1E-06 55.7 2.8 25 117-141 28-52 (246)
206 2bdt_A BH3686; alpha-beta prot 93.6 0.032 1.1E-06 52.8 2.9 22 119-140 5-26 (189)
207 2xb4_A Adenylate kinase; ATP-b 93.6 0.03 1E-06 54.9 2.8 24 118-141 2-25 (223)
208 3umf_A Adenylate kinase; rossm 93.6 0.031 1E-06 55.1 2.8 25 117-141 30-54 (217)
209 1e4v_A Adenylate kinase; trans 93.6 0.028 9.5E-07 54.5 2.4 24 118-141 2-25 (214)
210 2yvu_A Probable adenylyl-sulfa 93.5 0.031 1.1E-06 52.8 2.7 25 117-141 14-38 (186)
211 3a00_A Guanylate kinase, GMP k 93.5 0.034 1.2E-06 52.8 2.9 24 118-141 3-26 (186)
212 1nn5_A Similar to deoxythymidy 93.4 0.029 9.9E-07 53.9 2.3 25 117-141 10-34 (215)
213 2iut_A DNA translocase FTSK; n 93.4 0.23 8E-06 55.6 9.8 59 227-297 346-409 (574)
214 2qmh_A HPR kinase/phosphorylas 93.4 0.031 1.1E-06 54.2 2.4 28 114-141 32-59 (205)
215 3a4m_A L-seryl-tRNA(SEC) kinas 93.4 0.033 1.1E-06 56.0 2.7 23 118-140 6-28 (260)
216 3c8u_A Fructokinase; YP_612366 93.4 0.028 9.7E-07 54.3 2.1 25 117-141 23-47 (208)
217 3a8t_A Adenylate isopentenyltr 93.4 0.036 1.2E-06 58.2 3.0 24 118-141 42-65 (339)
218 3e2i_A Thymidine kinase; Zn-bi 93.3 0.23 7.9E-06 48.7 8.6 28 225-252 102-129 (219)
219 2qt1_A Nicotinamide riboside k 93.2 0.047 1.6E-06 52.5 3.4 25 118-142 23-47 (207)
220 3t3p_B Integrin beta-3; integr 93.1 0.095 3.3E-06 57.1 6.0 77 558-635 108-215 (472)
221 2if2_A Dephospho-COA kinase; a 93.1 0.04 1.4E-06 52.7 2.7 23 118-141 3-25 (204)
222 3ake_A Cytidylate kinase; CMP 93.1 0.041 1.4E-06 52.5 2.8 24 118-141 4-27 (208)
223 2pez_A Bifunctional 3'-phospho 93.1 0.042 1.4E-06 51.5 2.7 24 118-141 7-30 (179)
224 1znw_A Guanylate kinase, GMP k 93.0 0.05 1.7E-06 52.5 3.2 26 117-142 21-46 (207)
225 3vi3_B Integrin beta-1; beta p 93.0 0.14 4.9E-06 55.4 7.0 77 558-635 119-224 (454)
226 3exa_A TRNA delta(2)-isopenten 93.0 0.046 1.6E-06 56.8 3.0 24 118-141 5-28 (322)
227 1uj2_A Uridine-cytidine kinase 92.9 0.05 1.7E-06 54.3 3.2 24 118-141 24-47 (252)
228 3k6s_B Integrin beta-2; cell r 92.9 0.05 1.7E-06 62.4 3.4 77 558-635 101-207 (687)
229 1jjv_A Dephospho-COA kinase; P 92.8 0.046 1.6E-06 52.4 2.7 21 118-138 4-24 (206)
230 1lvg_A Guanylate kinase, GMP k 92.8 0.05 1.7E-06 52.3 3.0 25 117-141 5-29 (198)
231 3foz_A TRNA delta(2)-isopenten 92.8 0.052 1.8E-06 56.3 3.2 25 117-141 11-35 (316)
232 3crm_A TRNA delta(2)-isopenten 92.7 0.054 1.9E-06 56.5 3.3 25 117-141 6-30 (323)
233 1m7g_A Adenylylsulfate kinase; 92.7 0.047 1.6E-06 52.8 2.6 25 117-141 26-50 (211)
234 3asz_A Uridine kinase; cytidin 92.7 0.04 1.4E-06 53.0 2.1 24 118-141 8-31 (211)
235 3v4v_B Integrin beta-7; cell a 92.7 0.11 3.9E-06 56.8 5.8 77 558-635 129-235 (503)
236 3ney_A 55 kDa erythrocyte memb 92.7 0.06 2.1E-06 52.1 3.3 25 117-141 20-44 (197)
237 2ga8_A Hypothetical 39.9 kDa p 92.6 0.091 3.1E-06 55.5 4.8 26 116-141 24-49 (359)
238 4e22_A Cytidylate kinase; P-lo 92.6 0.059 2E-06 53.9 3.3 26 116-141 27-52 (252)
239 1svm_A Large T antigen; AAA+ f 92.6 0.1 3.5E-06 55.7 5.2 28 114-141 167-194 (377)
240 3r20_A Cytidylate kinase; stru 92.6 0.054 1.8E-06 53.9 2.8 25 117-141 10-34 (233)
241 1s96_A Guanylate kinase, GMP k 92.5 0.073 2.5E-06 52.3 3.8 27 116-142 16-42 (219)
242 3vkw_A Replicase large subunit 92.5 0.052 1.8E-06 59.0 2.9 25 225-249 235-259 (446)
243 1z6g_A Guanylate kinase; struc 92.4 0.076 2.6E-06 51.9 3.7 26 116-141 23-48 (218)
244 3tqf_A HPR(Ser) kinase; transf 92.4 0.049 1.7E-06 51.7 2.1 28 112-139 12-39 (181)
245 4gp7_A Metallophosphoesterase; 92.3 0.06 2E-06 50.4 2.6 19 118-136 11-29 (171)
246 1htw_A HI0065; nucleotide-bind 92.3 0.071 2.4E-06 49.6 3.1 25 117-141 34-58 (158)
247 1ltq_A Polynucleotide kinase; 92.2 0.064 2.2E-06 54.7 3.0 23 118-140 4-26 (301)
248 4a74_A DNA repair and recombin 92.2 0.062 2.1E-06 52.0 2.7 24 118-141 27-50 (231)
249 1w4r_A Thymidine kinase; type 92.1 0.2 6.9E-06 48.3 6.2 22 119-140 23-45 (195)
250 3nwj_A ATSK2; P loop, shikimat 92.1 0.062 2.1E-06 54.0 2.7 26 116-141 48-73 (250)
251 1uf9_A TT1252 protein; P-loop, 92.1 0.061 2.1E-06 51.1 2.5 23 117-139 9-31 (203)
252 1gtv_A TMK, thymidylate kinase 92.0 0.032 1.1E-06 53.6 0.4 23 119-141 3-25 (214)
253 1g5t_A COB(I)alamin adenosyltr 91.9 0.049 1.7E-06 52.7 1.5 26 115-140 27-52 (196)
254 2w0m_A SSO2452; RECA, SSPF, un 91.9 0.073 2.5E-06 51.4 2.9 24 117-140 24-47 (235)
255 2ehv_A Hypothetical protein PH 91.8 0.076 2.6E-06 52.1 2.8 22 117-138 31-52 (251)
256 1rz3_A Hypothetical protein rb 91.5 0.14 4.9E-06 49.0 4.5 24 118-141 24-47 (201)
257 3lnc_A Guanylate kinase, GMP k 91.5 0.063 2.2E-06 52.6 1.9 25 118-142 29-54 (231)
258 2cvh_A DNA repair and recombin 91.5 0.11 3.7E-06 49.9 3.5 22 117-138 21-42 (220)
259 2grj_A Dephospho-COA kinase; T 91.4 0.089 3.1E-06 50.6 2.8 23 119-141 15-37 (192)
260 3d3q_A TRNA delta(2)-isopenten 91.4 0.096 3.3E-06 55.0 3.2 24 118-141 9-32 (340)
261 4eaq_A DTMP kinase, thymidylat 91.3 0.088 3E-06 52.0 2.8 24 118-141 28-51 (229)
262 2onk_A Molybdate/tungstate ABC 91.3 0.1 3.4E-06 52.1 3.2 27 117-143 25-51 (240)
263 3tif_A Uncharacterized ABC tra 91.3 0.084 2.9E-06 52.4 2.6 27 117-143 32-58 (235)
264 4b3f_X DNA-binding protein smu 91.3 0.13 4.6E-06 58.6 4.6 37 102-140 193-230 (646)
265 3kta_A Chromosome segregation 91.2 0.12 4E-06 48.4 3.3 26 116-141 26-51 (182)
266 1p9r_A General secretion pathw 91.2 0.18 6.1E-06 54.6 5.2 28 115-142 166-193 (418)
267 2pcj_A ABC transporter, lipopr 91.2 0.08 2.7E-06 52.1 2.2 27 117-143 31-57 (224)
268 2v9p_A Replication protein E1; 91.1 0.11 3.6E-06 53.9 3.2 26 115-140 125-150 (305)
269 2eyu_A Twitching motility prot 91.1 0.1 3.4E-06 52.7 3.0 26 116-141 25-50 (261)
270 2jeo_A Uridine-cytidine kinase 91.1 0.092 3.2E-06 52.1 2.6 24 118-141 27-50 (245)
271 1vht_A Dephospho-COA kinase; s 91.0 0.1 3.6E-06 50.4 2.9 21 118-138 6-26 (218)
272 1n0w_A DNA repair protein RAD5 90.9 0.12 4E-06 50.5 3.2 23 117-139 25-47 (243)
273 1sgw_A Putative ABC transporte 90.8 0.1 3.6E-06 51.0 2.7 27 117-143 36-62 (214)
274 2h92_A Cytidylate kinase; ross 90.7 0.13 4.4E-06 49.7 3.3 24 118-141 5-28 (219)
275 3zvl_A Bifunctional polynucleo 90.7 0.1 3.5E-06 56.3 2.7 24 118-141 260-283 (416)
276 3aez_A Pantothenate kinase; tr 90.7 0.1 3.5E-06 54.1 2.6 24 118-141 92-115 (312)
277 1m2o_A SEC23, protein transpor 90.7 0.37 1.3E-05 56.2 7.5 45 559-606 119-163 (768)
278 1b0u_A Histidine permease; ABC 90.6 0.11 3.7E-06 52.5 2.7 27 117-143 33-59 (262)
279 1g6h_A High-affinity branched- 90.6 0.11 3.7E-06 52.3 2.6 27 117-143 34-60 (257)
280 3gfo_A Cobalt import ATP-bindi 90.5 0.11 3.8E-06 52.9 2.7 27 117-143 35-61 (275)
281 1mv5_A LMRA, multidrug resista 90.4 0.12 4E-06 51.6 2.7 26 117-142 29-54 (243)
282 1odf_A YGR205W, hypothetical 3 90.4 0.12 4E-06 53.1 2.7 24 118-141 33-56 (290)
283 1ji0_A ABC transporter; ATP bi 90.4 0.12 4E-06 51.5 2.6 27 117-143 33-59 (240)
284 2ff7_A Alpha-hemolysin translo 90.4 0.12 4E-06 51.8 2.6 27 117-143 36-62 (247)
285 2pze_A Cystic fibrosis transme 90.3 0.12 4.2E-06 51.0 2.7 28 116-143 34-61 (229)
286 2olj_A Amino acid ABC transpor 90.3 0.12 4.2E-06 52.2 2.7 27 117-143 51-77 (263)
287 1q3t_A Cytidylate kinase; nucl 90.2 0.13 4.4E-06 50.6 2.8 25 117-141 17-41 (236)
288 1lw7_A Transcriptional regulat 90.2 0.16 5.6E-06 53.5 3.7 26 117-142 171-196 (365)
289 2qi9_C Vitamin B12 import ATP- 90.1 0.13 4.3E-06 51.6 2.7 26 117-142 27-52 (249)
290 4g1u_C Hemin import ATP-bindin 90.1 0.12 4.1E-06 52.3 2.5 26 117-142 38-63 (266)
291 2ixe_A Antigen peptide transpo 90.1 0.13 4.3E-06 52.3 2.6 27 117-143 46-72 (271)
292 2cbz_A Multidrug resistance-as 90.0 0.1 3.5E-06 51.8 1.9 26 117-142 32-57 (237)
293 2ihy_A ABC transporter, ATP-bi 90.0 0.13 4.4E-06 52.5 2.7 27 117-143 48-74 (279)
294 2oap_1 GSPE-2, type II secreti 90.0 0.21 7.3E-06 55.4 4.5 27 116-142 260-286 (511)
295 1vpl_A ABC transporter, ATP-bi 89.9 0.13 4.6E-06 51.7 2.7 27 117-143 42-68 (256)
296 2nq2_C Hypothetical ABC transp 89.8 0.14 4.8E-06 51.4 2.6 27 117-143 32-58 (253)
297 2yz2_A Putative ABC transporte 89.8 0.14 4.7E-06 51.8 2.6 27 117-143 34-60 (266)
298 3tqc_A Pantothenate kinase; bi 89.7 0.15 5E-06 53.2 2.8 23 119-141 95-117 (321)
299 2gza_A Type IV secretion syste 89.6 0.14 4.9E-06 54.1 2.7 27 116-142 175-201 (361)
300 1cr0_A DNA primase/helicase; R 89.6 0.13 4.4E-06 52.4 2.3 25 117-141 36-60 (296)
301 2f1r_A Molybdopterin-guanine d 89.6 0.11 3.7E-06 49.0 1.6 25 117-141 3-27 (171)
302 1sq5_A Pantothenate kinase; P- 89.5 0.14 4.7E-06 52.9 2.4 24 118-141 82-105 (308)
303 3fvq_A Fe(3+) IONS import ATP- 89.4 0.16 5.3E-06 53.9 2.8 26 117-142 31-56 (359)
304 3d31_A Sulfate/molybdate ABC t 89.3 0.18 6.2E-06 53.1 3.2 26 117-142 27-52 (348)
305 2f6r_A COA synthase, bifunctio 89.3 0.15 5E-06 51.9 2.4 21 118-138 77-97 (281)
306 3fdi_A Uncharacterized protein 89.2 0.23 7.7E-06 48.0 3.6 24 118-141 8-31 (201)
307 1z47_A CYSA, putative ABC-tran 89.2 0.18 6.2E-06 53.3 3.1 26 117-142 42-67 (355)
308 1nlf_A Regulatory protein REPA 89.2 0.16 5.3E-06 51.4 2.5 25 116-140 30-54 (279)
309 2pt7_A CAG-ALFA; ATPase, prote 89.2 0.14 4.8E-06 53.5 2.2 27 116-142 171-197 (330)
310 3b85_A Phosphate starvation-in 89.1 0.14 4.8E-06 49.9 2.0 23 117-139 23-45 (208)
311 2ewv_A Twitching motility prot 89.1 0.18 6E-06 53.7 3.0 26 116-141 136-161 (372)
312 3rlf_A Maltose/maltodextrin im 89.1 0.19 6.5E-06 53.6 3.2 26 117-142 30-55 (381)
313 1pcx_A Protein transport prote 89.0 0.39 1.3E-05 56.3 6.0 91 559-651 185-321 (810)
314 2dr3_A UPF0273 protein PH0284; 89.0 0.18 6.1E-06 49.2 2.7 24 117-140 24-47 (247)
315 2a5y_B CED-4; apoptosis; HET: 88.9 0.28 9.6E-06 54.7 4.6 41 98-138 131-174 (549)
316 2ghi_A Transport protein; mult 88.9 0.2 6.9E-06 50.4 3.1 27 116-142 46-72 (260)
317 2it1_A 362AA long hypothetical 88.8 0.2 7E-06 53.0 3.2 26 117-142 30-55 (362)
318 2yyz_A Sugar ABC transporter, 88.8 0.2 6.9E-06 53.0 3.1 26 117-142 30-55 (359)
319 1rj9_A FTSY, signal recognitio 88.8 0.18 6.1E-06 52.1 2.6 24 118-141 104-127 (304)
320 1v43_A Sugar-binding transport 88.8 0.21 7.1E-06 53.2 3.2 26 117-142 38-63 (372)
321 2zpa_A Uncharacterized protein 88.6 0.53 1.8E-05 53.7 6.6 25 117-141 193-217 (671)
322 1g29_1 MALK, maltose transport 88.6 0.21 7.3E-06 53.1 3.1 26 117-142 30-55 (372)
323 1xjc_A MOBB protein homolog; s 88.6 0.21 7.1E-06 47.1 2.7 25 117-141 5-29 (169)
324 1p5z_B DCK, deoxycytidine kina 88.3 0.13 4.4E-06 51.5 1.2 24 118-141 26-49 (263)
325 1oxx_K GLCV, glucose, ABC tran 88.3 0.19 6.4E-06 53.1 2.4 26 117-142 32-57 (353)
326 3h1t_A Type I site-specific re 88.2 0.72 2.5E-05 51.7 7.4 26 115-140 197-222 (590)
327 2f9l_A RAB11B, member RAS onco 88.2 0.24 8.2E-06 46.9 2.9 24 117-140 6-29 (199)
328 3eph_A TRNA isopentenyltransfe 88.2 0.19 6.5E-06 54.0 2.4 24 118-141 4-27 (409)
329 2ocp_A DGK, deoxyguanosine kin 88.1 0.22 7.7E-06 49.0 2.8 24 118-141 4-27 (241)
330 2gk6_A Regulator of nonsense t 88.1 0.34 1.2E-05 55.1 4.6 25 116-140 195-219 (624)
331 3b9q_A Chloroplast SRP recepto 88.1 0.21 7.2E-06 51.5 2.6 24 118-141 102-125 (302)
332 1oix_A RAS-related protein RAB 88.1 0.22 7.5E-06 47.0 2.6 24 118-141 31-54 (191)
333 1np6_A Molybdopterin-guanine d 88.0 0.23 7.9E-06 46.9 2.6 25 117-141 7-31 (174)
334 2d2e_A SUFC protein; ABC-ATPas 88.0 0.22 7.6E-06 49.7 2.7 23 117-139 30-52 (250)
335 2zu0_C Probable ATP-dependent 87.9 0.23 7.8E-06 50.2 2.7 24 117-140 47-70 (267)
336 2dyk_A GTP-binding protein; GT 87.9 0.27 9.1E-06 44.2 3.0 22 118-139 3-24 (161)
337 3sop_A Neuronal-specific septi 87.9 0.2 7E-06 50.7 2.4 24 118-141 4-27 (270)
338 1a7j_A Phosphoribulokinase; tr 87.8 0.13 4.3E-06 52.8 0.7 24 118-141 7-30 (290)
339 2axn_A 6-phosphofructo-2-kinas 87.8 0.22 7.4E-06 55.5 2.7 24 118-141 37-60 (520)
340 3nh6_A ATP-binding cassette SU 87.8 0.27 9.1E-06 50.9 3.2 28 116-143 80-107 (306)
341 3sfz_A APAF-1, apoptotic pepti 87.8 0.38 1.3E-05 58.3 5.1 49 91-139 120-170 (1249)
342 2zts_A Putative uncharacterize 87.8 0.25 8.5E-06 48.2 2.8 21 118-138 32-52 (251)
343 1pzn_A RAD51, DNA repair and r 87.7 0.23 8E-06 52.2 2.7 23 118-140 133-155 (349)
344 1knx_A Probable HPR(Ser) kinas 87.6 0.2 6.7E-06 52.0 2.0 25 115-139 146-170 (312)
345 2pjz_A Hypothetical protein ST 87.6 0.22 7.5E-06 50.3 2.4 24 117-140 31-54 (263)
346 4edh_A DTMP kinase, thymidylat 87.5 0.25 8.5E-06 48.2 2.6 24 118-141 8-31 (213)
347 3cr8_A Sulfate adenylyltranfer 87.4 0.21 7.1E-06 56.0 2.2 25 117-141 370-394 (552)
348 1z2a_A RAS-related protein RAB 87.4 0.29 1E-05 44.1 2.9 23 117-139 6-28 (168)
349 2fwr_A DNA repair protein RAD2 87.3 0.44 1.5E-05 51.6 4.8 25 117-141 109-133 (472)
350 3b0c_W CENP-W, centromere prot 87.3 0.94 3.2E-05 36.7 5.5 58 341-405 16-73 (76)
351 3e70_C DPA, signal recognition 87.2 0.26 8.8E-06 51.5 2.7 24 118-141 131-154 (328)
352 2zej_A Dardarin, leucine-rich 87.2 0.24 8.1E-06 46.3 2.2 22 118-139 4-25 (184)
353 1kao_A RAP2A; GTP-binding prot 87.1 0.32 1.1E-05 43.7 3.0 22 118-139 5-26 (167)
354 2wji_A Ferrous iron transport 87.1 0.28 9.6E-06 44.9 2.6 22 118-139 5-26 (165)
355 3hr8_A Protein RECA; alpha and 87.1 0.23 7.9E-06 52.5 2.3 23 118-140 63-85 (356)
356 1vma_A Cell division protein F 87.0 0.27 9.3E-06 50.8 2.7 23 119-141 107-129 (306)
357 3tui_C Methionine import ATP-b 87.0 0.31 1.1E-05 51.6 3.2 26 117-142 55-80 (366)
358 2nzj_A GTP-binding protein REM 86.9 0.3 1E-05 44.5 2.7 23 117-139 5-27 (175)
359 3v9p_A DTMP kinase, thymidylat 86.7 0.24 8.2E-06 48.9 2.0 24 118-141 27-50 (227)
360 2ce2_X GTPase HRAS; signaling 86.6 0.3 1E-05 43.7 2.5 22 118-139 5-26 (166)
361 1ek0_A Protein (GTP-binding pr 86.6 0.34 1.2E-05 43.7 2.9 22 118-139 5-26 (170)
362 1u8z_A RAS-related protein RAL 86.6 0.35 1.2E-05 43.5 2.9 23 117-139 5-27 (168)
363 1z0j_A RAB-22, RAS-related pro 86.5 0.35 1.2E-05 43.7 3.0 23 117-139 7-29 (170)
364 3t1o_A Gliding protein MGLA; G 86.5 0.38 1.3E-05 44.7 3.2 25 117-141 15-39 (198)
365 2og2_A Putative signal recogni 86.5 0.29 1E-05 51.7 2.6 23 119-141 160-182 (359)
366 2bbs_A Cystic fibrosis transme 86.4 0.31 1E-05 50.0 2.7 26 117-142 65-90 (290)
367 2krk_A 26S protease regulatory 86.4 1 3.5E-05 37.2 5.4 41 366-406 45-85 (86)
368 2erx_A GTP-binding protein DI- 86.3 0.36 1.2E-05 43.7 2.8 23 117-139 4-26 (172)
369 1wms_A RAB-9, RAB9, RAS-relate 86.2 0.37 1.3E-05 44.0 3.0 23 117-139 8-30 (177)
370 2px0_A Flagellar biosynthesis 86.2 0.28 9.6E-06 50.4 2.3 25 117-141 106-130 (296)
371 1nrj_B SR-beta, signal recogni 86.1 0.36 1.2E-05 46.1 2.9 25 116-140 12-36 (218)
372 2ged_A SR-beta, signal recogni 86.1 0.37 1.3E-05 44.9 3.0 25 116-140 48-72 (193)
373 1z08_A RAS-related protein RAB 86.1 0.38 1.3E-05 43.5 2.9 23 117-139 7-29 (170)
374 1ky3_A GTP-binding protein YPT 86.0 0.39 1.3E-05 43.9 3.0 23 117-139 9-31 (182)
375 2npi_A Protein CLP1; CLP1-PCF1 86.0 0.32 1.1E-05 53.3 2.7 26 116-141 138-163 (460)
376 1c1y_A RAS-related protein RAP 85.9 0.39 1.3E-05 43.2 2.9 22 118-139 5-26 (167)
377 1bif_A 6-phosphofructo-2-kinas 85.9 0.32 1.1E-05 53.2 2.7 25 117-141 40-64 (469)
378 3gd7_A Fusion complex of cysti 85.9 0.27 9.3E-06 52.6 2.1 26 116-141 47-72 (390)
379 1r2q_A RAS-related protein RAB 85.9 0.39 1.3E-05 43.3 2.9 23 117-139 7-29 (170)
380 2wjg_A FEOB, ferrous iron tran 85.8 0.38 1.3E-05 44.6 2.8 23 117-139 8-30 (188)
381 2zr9_A Protein RECA, recombina 85.8 0.34 1.1E-05 51.0 2.7 24 117-140 62-85 (349)
382 1g16_A RAS-related protein SEC 85.7 0.36 1.2E-05 43.6 2.5 23 117-139 4-26 (170)
383 3q85_A GTP-binding protein REM 85.7 0.39 1.3E-05 43.5 2.8 21 118-138 4-24 (169)
384 2yhs_A FTSY, cell division pro 85.7 0.34 1.2E-05 53.4 2.7 23 119-141 296-318 (503)
385 2wjy_A Regulator of nonsense t 85.6 0.54 1.9E-05 55.0 4.6 24 117-140 372-395 (800)
386 2hxs_A RAB-26, RAS-related pro 85.6 0.42 1.4E-05 43.7 3.0 23 117-139 7-29 (178)
387 1c9k_A COBU, adenosylcobinamid 85.6 0.36 1.2E-05 46.0 2.5 21 119-139 2-22 (180)
388 1tq4_A IIGP1, interferon-induc 85.6 0.58 2E-05 50.4 4.5 26 116-141 69-94 (413)
389 3bc1_A RAS-related protein RAB 85.6 0.41 1.4E-05 44.3 2.9 23 117-139 12-34 (195)
390 1g8f_A Sulfate adenylyltransfe 85.6 0.31 1.1E-05 54.0 2.4 25 117-141 396-420 (511)
391 1v5w_A DMC1, meiotic recombina 85.5 0.43 1.5E-05 50.0 3.3 22 118-139 124-145 (343)
392 2lkc_A Translation initiation 85.5 0.55 1.9E-05 42.9 3.7 25 115-139 7-31 (178)
393 3q72_A GTP-binding protein RAD 85.4 0.34 1.2E-05 43.7 2.3 22 117-138 3-24 (166)
394 3lv8_A DTMP kinase, thymidylat 85.4 0.32 1.1E-05 48.3 2.2 24 118-141 29-52 (236)
395 1r8s_A ADP-ribosylation factor 85.4 0.43 1.5E-05 43.0 2.9 22 118-139 2-23 (164)
396 1z0f_A RAB14, member RAS oncog 85.3 0.43 1.5E-05 43.5 2.9 23 117-139 16-38 (179)
397 2z43_A DNA repair and recombin 85.3 0.37 1.3E-05 50.0 2.7 24 117-140 108-131 (324)
398 1taf_A TFIID TBP associated fa 85.3 2 6.7E-05 34.1 6.2 49 347-402 18-66 (68)
399 3tmk_A Thymidylate kinase; pho 85.2 0.36 1.2E-05 47.3 2.4 25 117-141 6-30 (216)
400 3lda_A DNA repair protein RAD5 85.2 0.34 1.2E-05 52.0 2.4 20 119-138 181-200 (400)
401 4dsu_A GTPase KRAS, isoform 2B 85.0 0.46 1.6E-05 43.8 3.0 23 117-139 5-27 (189)
402 1x6v_B Bifunctional 3'-phospho 85.0 0.36 1.2E-05 54.7 2.6 23 118-140 54-76 (630)
403 3thx_A DNA mismatch repair pro 85.0 1 3.5E-05 53.5 6.5 20 119-138 665-684 (934)
404 2gj8_A MNME, tRNA modification 85.0 0.39 1.3E-05 44.4 2.4 23 117-139 5-27 (172)
405 3tw8_B RAS-related protein RAB 84.9 0.42 1.4E-05 43.7 2.6 22 117-138 10-31 (181)
406 1yrb_A ATP(GTP)binding protein 84.9 0.37 1.2E-05 47.7 2.3 37 118-156 16-52 (262)
407 3con_A GTPase NRAS; structural 84.9 0.46 1.6E-05 44.2 2.9 22 118-139 23-44 (190)
408 1ko7_A HPR kinase/phosphatase; 84.8 0.35 1.2E-05 50.2 2.2 25 115-139 143-167 (314)
409 2oil_A CATX-8, RAS-related pro 84.8 0.46 1.6E-05 44.3 2.9 23 117-139 26-48 (193)
410 3clv_A RAB5 protein, putative; 84.8 0.47 1.6E-05 44.1 3.0 23 117-139 8-30 (208)
411 2fn4_A P23, RAS-related protei 84.8 0.42 1.4E-05 43.6 2.6 23 117-139 10-32 (181)
412 1upt_A ARL1, ADP-ribosylation 84.8 0.47 1.6E-05 42.9 2.9 23 116-138 7-29 (171)
413 3gmt_A Adenylate kinase; ssgci 84.7 0.44 1.5E-05 47.2 2.8 23 119-141 11-33 (230)
414 2a9k_A RAS-related protein RAL 84.7 0.47 1.6E-05 43.5 2.9 23 117-139 19-41 (187)
415 2y8e_A RAB-protein 6, GH09086P 84.7 0.42 1.4E-05 43.6 2.5 23 117-139 15-37 (179)
416 3ld9_A DTMP kinase, thymidylat 84.7 0.42 1.4E-05 47.0 2.6 24 118-141 23-46 (223)
417 2v6i_A RNA helicase; membrane, 84.7 1 3.5E-05 48.5 5.9 17 117-133 3-19 (431)
418 2efe_B Small GTP-binding prote 84.5 0.49 1.7E-05 43.3 2.9 23 117-139 13-35 (181)
419 1f2t_A RAD50 ABC-ATPase; DNA d 84.5 0.43 1.5E-05 43.6 2.5 24 117-140 24-47 (149)
420 3kw6_A 26S protease regulatory 84.4 1.8 6.2E-05 34.7 5.9 49 353-404 27-75 (78)
421 1m8p_A Sulfate adenylyltransfe 84.4 0.4 1.4E-05 53.9 2.6 24 118-141 398-421 (573)
422 1u94_A RECA protein, recombina 84.3 0.49 1.7E-05 49.9 3.1 24 117-140 64-87 (356)
423 1m7b_A RND3/RHOE small GTP-bin 84.3 0.45 1.5E-05 44.2 2.5 23 117-139 8-30 (184)
424 4tmk_A Protein (thymidylate ki 84.3 0.4 1.4E-05 46.8 2.3 24 118-141 5-28 (213)
425 3i8s_A Ferrous iron transport 84.1 1.9 6.7E-05 43.2 7.4 23 117-139 4-26 (274)
426 2wsm_A Hydrogenase expression/ 84.1 0.55 1.9E-05 45.0 3.2 27 115-141 29-55 (221)
427 3kkq_A RAS-related protein M-R 84.1 0.52 1.8E-05 43.4 2.9 23 117-139 19-41 (183)
428 2i1q_A DNA repair and recombin 84.1 0.42 1.4E-05 49.3 2.4 22 118-139 100-121 (322)
429 2g6b_A RAS-related protein RAB 84.0 0.53 1.8E-05 43.1 2.9 23 117-139 11-33 (180)
430 3bh0_A DNAB-like replicative h 83.9 0.49 1.7E-05 48.9 2.8 23 118-140 70-92 (315)
431 1mh1_A RAC1; GTP-binding, GTPa 83.8 0.55 1.9E-05 43.1 2.9 23 117-139 6-28 (186)
432 2gf9_A RAS-related protein RAB 83.7 0.55 1.9E-05 43.7 2.9 23 117-139 23-45 (189)
433 1svi_A GTP-binding protein YSX 83.7 0.44 1.5E-05 44.4 2.2 24 116-139 23-46 (195)
434 2obl_A ESCN; ATPase, hydrolase 83.6 0.52 1.8E-05 49.5 3.0 26 116-141 71-96 (347)
435 3hdt_A Putative kinase; struct 83.6 0.46 1.6E-05 46.7 2.4 24 118-141 16-39 (223)
436 2bme_A RAB4A, RAS-related prot 83.6 0.5 1.7E-05 43.6 2.5 23 117-139 11-33 (186)
437 2cxx_A Probable GTP-binding pr 83.6 0.43 1.5E-05 44.1 2.1 22 118-139 3-24 (190)
438 2vp4_A Deoxynucleoside kinase; 83.6 0.35 1.2E-05 47.3 1.5 22 118-139 22-43 (230)
439 2qm8_A GTPase/ATPase; G protei 83.4 0.49 1.7E-05 49.5 2.6 25 117-141 56-80 (337)
440 3c5c_A RAS-like protein 12; GD 83.4 0.59 2E-05 43.7 3.0 23 117-139 22-44 (187)
441 1vg8_A RAS-related protein RAB 83.4 0.58 2E-05 44.0 3.0 23 117-139 9-31 (207)
442 2dpy_A FLII, flagellum-specifi 83.4 0.53 1.8E-05 51.1 3.0 26 116-141 157-182 (438)
443 3bwd_D RAC-like GTP-binding pr 83.4 0.59 2E-05 42.9 2.9 24 116-139 8-31 (182)
444 2bov_A RAla, RAS-related prote 83.4 0.58 2E-05 44.0 2.9 23 117-139 15-37 (206)
445 3tkl_A RAS-related protein RAB 83.3 0.58 2E-05 43.5 2.9 23 117-139 17-39 (196)
446 3ihw_A Centg3; RAS, centaurin, 83.3 0.59 2E-05 43.7 2.9 22 118-139 22-43 (184)
447 2xzl_A ATP-dependent helicase 83.1 0.85 2.9E-05 53.4 4.7 24 116-139 375-398 (802)
448 1pui_A ENGB, probable GTP-bind 83.1 0.3 1E-05 46.4 0.7 23 117-139 27-49 (210)
449 1zbd_A Rabphilin-3A; G protein 83.1 0.58 2E-05 44.0 2.8 23 117-139 9-31 (203)
450 1z06_A RAS-related protein RAB 83.1 0.62 2.1E-05 43.4 3.0 23 117-139 21-43 (189)
451 2atv_A RERG, RAS-like estrogen 83.1 0.61 2.1E-05 43.7 3.0 24 116-139 28-51 (196)
452 2hf9_A Probable hydrogenase ni 82.9 0.9 3.1E-05 43.6 4.2 26 115-140 37-62 (226)
453 3dz8_A RAS-related protein RAB 82.9 0.55 1.9E-05 43.8 2.5 24 117-140 24-47 (191)
454 3pqc_A Probable GTP-binding pr 82.8 0.61 2.1E-05 43.2 2.8 24 116-139 23-46 (195)
455 1x3s_A RAS-related protein RAB 82.8 0.63 2.1E-05 43.2 2.9 23 117-139 16-38 (195)
456 2a5j_A RAS-related protein RAB 82.8 0.63 2.2E-05 43.4 2.9 22 118-139 23-44 (191)
457 1zd9_A ADP-ribosylation factor 82.8 0.63 2.2E-05 43.4 2.9 23 117-139 23-45 (188)
458 3reg_A RHO-like small GTPase; 82.8 0.63 2.2E-05 43.5 2.9 23 117-139 24-46 (194)
459 2iwr_A Centaurin gamma 1; ANK 82.6 0.51 1.7E-05 43.3 2.1 23 117-139 8-30 (178)
460 2p5s_A RAS and EF-hand domain 82.6 0.65 2.2E-05 43.7 2.9 24 116-139 28-51 (199)
461 3ice_A Transcription terminati 82.5 1 3.6E-05 48.1 4.7 26 115-140 173-198 (422)
462 1m2o_B GTP-binding protein SAR 82.5 0.58 2E-05 43.9 2.5 24 116-139 23-46 (190)
463 1u0l_A Probable GTPase ENGC; p 82.4 0.55 1.9E-05 48.1 2.5 24 118-141 171-194 (301)
464 1yqt_A RNAse L inhibitor; ATP- 82.4 0.63 2.2E-05 51.9 3.2 26 117-142 48-73 (538)
465 3t5g_A GTP-binding protein RHE 82.4 0.59 2E-05 42.9 2.5 22 117-138 7-28 (181)
466 3lxx_A GTPase IMAP family memb 82.4 0.63 2.2E-05 45.5 2.8 24 117-140 30-53 (239)
467 3kl4_A SRP54, signal recogniti 82.4 0.49 1.7E-05 51.3 2.2 24 118-141 99-122 (433)
468 2fg5_A RAB-22B, RAS-related pr 82.3 0.61 2.1E-05 43.7 2.6 23 117-139 24-46 (192)
469 3v9r_A MHF1, uncharacterized p 82.3 6.5 0.00022 32.8 8.5 49 345-400 30-78 (90)
470 2rcn_A Probable GTPase ENGC; Y 82.3 0.6 2.1E-05 49.3 2.8 25 117-141 216-240 (358)
471 3io5_A Recombination and repai 82.2 0.57 1.9E-05 48.7 2.5 23 118-140 30-52 (333)
472 4ag6_A VIRB4 ATPase, type IV s 82.1 0.67 2.3E-05 49.2 3.1 26 115-140 34-59 (392)
473 1zu4_A FTSY; GTPase, signal re 82.1 0.6 2.1E-05 48.4 2.7 23 119-141 108-130 (320)
474 3euj_A Chromosome partition pr 82.0 0.65 2.2E-05 51.0 3.0 26 117-142 30-55 (483)
475 3oes_A GTPase rhebl1; small GT 82.0 0.62 2.1E-05 43.9 2.5 23 117-139 25-47 (201)
476 2gf0_A GTP-binding protein DI- 81.9 0.64 2.2E-05 43.4 2.6 24 116-139 8-31 (199)
477 1fzq_A ADP-ribosylation factor 81.9 0.58 2E-05 43.5 2.3 24 116-139 16-39 (181)
478 3cph_A RAS-related protein SEC 81.9 0.71 2.4E-05 43.6 2.9 23 117-139 21-43 (213)
479 4gzl_A RAS-related C3 botulinu 81.9 0.66 2.3E-05 44.1 2.7 25 115-139 29-53 (204)
480 2bcg_Y Protein YP2, GTP-bindin 81.8 0.63 2.2E-05 43.9 2.5 23 117-139 9-31 (206)
481 1ksh_A ARF-like protein 2; sma 81.8 0.66 2.3E-05 42.9 2.6 24 115-138 17-40 (186)
482 2fu5_C RAS-related protein RAB 81.6 0.49 1.7E-05 43.6 1.6 23 117-139 9-31 (183)
483 1m2v_B SEC24, protein transpor 81.6 1 3.4E-05 53.5 4.6 92 559-651 301-437 (926)
484 1gwn_A RHO-related GTP-binding 81.6 0.65 2.2E-05 44.3 2.5 23 117-139 29-51 (205)
485 1qhl_A Protein (cell division 81.5 0.36 1.2E-05 47.6 0.7 23 120-142 31-53 (227)
486 3vh5_A CENP-S; histone fold, c 81.5 5.8 0.0002 35.8 8.4 50 344-400 36-85 (140)
487 1tf7_A KAIC; homohexamer, hexa 81.4 0.63 2.1E-05 51.6 2.7 25 117-141 282-306 (525)
488 3llm_A ATP-dependent RNA helic 81.2 1.4 4.7E-05 43.1 4.8 22 116-137 76-97 (235)
489 3cbq_A GTP-binding protein REM 81.2 0.6 2E-05 44.1 2.1 22 117-138 24-45 (195)
490 2il1_A RAB12; G-protein, GDP, 81.2 0.71 2.4E-05 43.2 2.6 21 118-138 28-48 (192)
491 4hlc_A DTMP kinase, thymidylat 81.2 0.71 2.4E-05 44.6 2.6 23 119-141 5-27 (205)
492 2ew1_A RAS-related protein RAB 81.1 0.69 2.4E-05 44.1 2.5 23 117-139 27-49 (201)
493 4dra_A Centromere protein S; D 81.1 3.6 0.00012 35.8 6.8 49 345-400 45-93 (113)
494 2yv5_A YJEQ protein; hydrolase 81.1 0.75 2.6E-05 47.2 3.0 24 117-141 166-189 (302)
495 2r6a_A DNAB helicase, replicat 81.1 0.66 2.2E-05 50.5 2.6 22 119-140 206-227 (454)
496 2fh5_B SR-beta, signal recogni 81.1 0.78 2.7E-05 43.6 2.9 24 116-139 7-30 (214)
497 1zj6_A ADP-ribosylation factor 81.1 0.68 2.3E-05 43.0 2.4 26 113-138 13-38 (187)
498 2qag_B Septin-6, protein NEDD5 81.0 0.56 1.9E-05 50.7 2.0 22 119-140 45-66 (427)
499 1vt4_I APAF-1 related killer D 81.0 1 3.5E-05 54.0 4.4 42 97-138 130-172 (1221)
500 2cjw_A GTP-binding protein GEM 81.0 0.8 2.7E-05 43.1 2.9 23 117-139 7-29 (192)
No 1
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=100.00 E-value=8.5e-38 Score=332.74 Aligned_cols=313 Identities=37% Similarity=0.571 Sum_probs=276.8
Q ss_pred CCCCCCCceechHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccccccc
Q 006254 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (653)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~ 168 (653)
.++++|++|+|++.+++++..+++.+..++|||+||||||||++|++++..+++.....+++|||....++..|..|..
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 96 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLS- 96 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSC-
T ss_pred CCCCCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhc-
Confidence 4578999999999999998887777777899999999999999999999999877777778899987766666655541
Q ss_pred ccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHHHHH
Q 006254 169 AEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVL 248 (653)
Q Consensus 169 ~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~l 248 (653)
+ .......+|+.++.+.+.+.++|.+++.+.+..+...+.+|++..+++||||||||+.++.+.++.|+.++
T Consensus 97 ~--------~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~l 168 (350)
T 1g8p_A 97 T--------NVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVA 168 (350)
T ss_dssp C--------CEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHH
T ss_pred c--------ccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHHHHHHHHHHH
Confidence 1 11123568899999999999999988888777787888999999999999999999999999999999999
Q ss_pred HcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhhhhh
Q 006254 249 TEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEE 328 (653)
Q Consensus 249 ~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~ 328 (653)
+++...+.+.|.....+.+|++|+|+|+.++.++++|++||++++.+..|.+.+.+.+|+.....+..++..|...|...
T Consensus 169 e~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~ 248 (350)
T 1g8p_A 169 QSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPK 248 (350)
T ss_dssp HHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred hcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccc
Confidence 99998899999999999999999999998889999999999998899977688889899998877777777777778888
Q ss_pred hhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHcCCCcc
Q 006254 329 TDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVILPRSI 408 (653)
Q Consensus 329 ~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~hR~~ 408 (653)
...+...|..++.....+.++++++++|+++++..++.+.|..+.+++.|.++|.+.|+..|+.+||.+|+.+++.||.+
T Consensus 249 ~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~l~~r~~ 328 (350)
T 1g8p_A 249 DMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMALSHRLR 328 (350)
T ss_dssp HHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHGGGCC
T ss_pred hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHhhccc
Confidence 88889999999888888999999999999999999988899999999999999999999999999999999999999987
Q ss_pred cC
Q 006254 409 IN 410 (653)
Q Consensus 409 ~~ 410 (653)
..
T Consensus 329 ~~ 330 (350)
T 1g8p_A 329 RD 330 (350)
T ss_dssp --
T ss_pred cC
Confidence 43
No 2
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.96 E-value=2.4e-28 Score=258.83 Aligned_cols=259 Identities=23% Similarity=0.294 Sum_probs=199.7
Q ss_pred CCCCCceechHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccccccccc
Q 006254 91 FFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAE 170 (653)
Q Consensus 91 ~~~f~~IvGq~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~ 170 (653)
+.-+.+|+|++.+++++..++.. .++|||+||||||||++|++++..++
T Consensus 23 ~~~~~~i~g~~~~~~~l~~~l~~--~~~vll~G~pGtGKT~la~~la~~~~----------------------------- 71 (331)
T 2r44_A 23 DEVGKVVVGQKYMINRLLIGICT--GGHILLEGVPGLAKTLSVNTLAKTMD----------------------------- 71 (331)
T ss_dssp HHHTTTCCSCHHHHHHHHHHHHH--TCCEEEESCCCHHHHHHHHHHHHHTT-----------------------------
T ss_pred HHhccceeCcHHHHHHHHHHHHc--CCeEEEECCCCCcHHHHHHHHHHHhC-----------------------------
Confidence 33467899999999999877764 57999999999999999999999875
Q ss_pred ccccccccccccCCCeEeC--CCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHHHHH
Q 006254 171 YDTAGNLKTQIARSPFVQI--PLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVL 248 (653)
Q Consensus 171 ~~~~~~~~~~~~~~~fv~l--~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~l 248 (653)
.+|+.+ ....+.+.++|...+. ...|...+.+|.+ .++|||||||+.++...++.|+.+|
T Consensus 72 -------------~~~~~i~~~~~~~~~~l~g~~~~~--~~~~~~~~~~g~l---~~~vl~iDEi~~~~~~~~~~Ll~~l 133 (331)
T 2r44_A 72 -------------LDFHRIQFTPDLLPSDLIGTMIYN--QHKGNFEVKKGPV---FSNFILADEVNRSPAKVQSALLECM 133 (331)
T ss_dssp -------------CCEEEEECCTTCCHHHHHEEEEEE--TTTTEEEEEECTT---CSSEEEEETGGGSCHHHHHHHHHHH
T ss_pred -------------CCeEEEecCCCCChhhcCCceeec--CCCCceEeccCcc---cccEEEEEccccCCHHHHHHHHHHH
Confidence 122222 2233444566654322 1234445666666 3689999999999999999999999
Q ss_pred HcCceEEeeCCeeEEeecCcEEEEEecCCC--Cc--ccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhh
Q 006254 249 TEGVNIVEREGISFKHPCKPLLIATYNPEE--GV--VREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKM 324 (653)
Q Consensus 249 ~~g~~~v~r~G~s~~~p~~~~lIattNp~e--g~--l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~ 324 (653)
+++.+.+ .|.....|.+|++|+|+||.+ +. ++++|+|||++++.+.. ++.+++.+|++...... +.....
T Consensus 134 ~~~~~~~--~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~-p~~~~~~~il~~~~~~~--~~~~~~- 207 (331)
T 2r44_A 134 QEKQVTI--GDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTY-LDKESELEVMRRVSNMN--FNYQVQ- 207 (331)
T ss_dssp HHSEEEE--TTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCC-CCHHHHHHHHHHHHCTT--CCCCCC-
T ss_pred hcCceee--CCEEEECCCCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCC-CCHHHHHHHHHhccccC--cchhcc-
Confidence 9998555 788888999999999999876 33 89999999998889985 58899999987543321 100000
Q ss_pred hhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcC----------------CCCcchHHHHHHHHHHHHHHcCCC
Q 006254 325 VEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGG----------------CQGHRAELYAARVAKCLAALEGRE 388 (653)
Q Consensus 325 ~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~----------------i~s~R~~i~llr~Ara~Aal~gr~ 388 (653)
.......+..++....++.+++++++++++++.... ..|.|..+.+++.|+++|.+.|+.
T Consensus 208 ----~~~~~~~i~~~~~~~~~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~ 283 (331)
T 2r44_A 208 ----KIVSKNDVLEIRNEINKVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRD 283 (331)
T ss_dssp ----CCSCHHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred ----ccCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCC
Confidence 111244566667777889999999999999874321 237999999999999999999999
Q ss_pred CccHHHHHHHHHHHcCCCcc
Q 006254 389 KVNVDDLKKAVELVILPRSI 408 (653)
Q Consensus 389 ~Vt~eDv~~A~~lvl~hR~~ 408 (653)
.|+++||.+|+..++.||..
T Consensus 284 ~v~~~dv~~~~~~vl~~r~~ 303 (331)
T 2r44_A 284 YVLPEDIKEVAYDILNHRII 303 (331)
T ss_dssp BCCHHHHHHHHHHHHTTTSE
T ss_pred CCCHHHHHHHHHHHhHhhcc
Confidence 99999999999999999976
No 3
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.95 E-value=9.9e-28 Score=260.60 Aligned_cols=239 Identities=17% Similarity=0.157 Sum_probs=180.5
Q ss_pred eechHHHHHHHHHhcccCCCc-------eEEEECCCCCHHHHHHHHH-HhhCCCCeeeccccccCCCCCCCccccccccc
Q 006254 97 VVGQDAIKTALLLGAIDREIG-------GIAISGRRGTAKTVMARGL-HAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (653)
Q Consensus 97 IvGq~~~k~aL~~~av~p~~~-------gVLL~GppGTGKT~lAral-a~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~ 168 (653)
|+||+.+|++|+++++. .+ +|||.|+||| ||++||++ +..+|+..
T Consensus 215 I~G~e~vK~aLll~L~G--G~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~------------------------ 267 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFS--CVGKNSERLHVLLAGYPVV-CSEILHHVLDHLAPRGV------------------------ 267 (506)
T ss_dssp STTCHHHHHHHHHHHTT--CCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEE------------------------
T ss_pred cCCCHHHHHHHHHHHcC--CccccCCceeEEEECCCCh-HHHHHHHHHHHhCCCeE------------------------
Confidence 99999999999998873 33 7999999999 99999999 99887421
Q ss_pred ccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHHHHH
Q 006254 169 AEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVL 248 (653)
Q Consensus 169 ~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~l 248 (653)
|+.. ...+...+.++ +... +| ..+++|.+..||+|||||||||++++.++.+|+++|
T Consensus 268 -----------------ft~g-~~ss~~gLt~s--~r~~--tG-~~~~~G~l~LAdgGvl~lDEIn~~~~~~qsaLlEaM 324 (506)
T 3f8t_A 268 -----------------YVDL-RRTELTDLTAV--LKED--RG-WALRAGAAVLADGGILAVDHLEGAPEPHRWALMEAM 324 (506)
T ss_dssp -----------------EEEG-GGCCHHHHSEE--EEES--SS-EEEEECHHHHTTTSEEEEECCTTCCHHHHHHHHHHH
T ss_pred -----------------EecC-CCCCccCceEE--EEcC--CC-cccCCCeeEEcCCCeeehHhhhhCCHHHHHHHHHHH
Confidence 1110 01111223333 1111 57 889999999999999999999999999999999999
Q ss_pred HcCceEEeeCCeeEEeecCcEEEEEecCCC----------CcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhh
Q 006254 249 TEGVNIVEREGISFKHPCKPLLIATYNPEE----------GVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERS 318 (653)
Q Consensus 249 ~~g~~~v~r~G~s~~~p~~~~lIattNp~e----------g~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~ 318 (653)
+++.+++. |. .+|++|.||||+||.+ ..|+++++|||++++.+...++.+...+
T Consensus 325 Ee~~VtI~--G~--~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e------------ 388 (506)
T 3f8t_A 325 DKGTVTVD--GI--ALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGEPEE------------ 388 (506)
T ss_dssp HHSEEEET--TE--EEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHTTCSEEEETTC---------------------
T ss_pred hCCcEEEC--CE--EcCCCeEEEEEeCcccccCCCCCccccCCChHHhhheeeEEEecCCCChhHhhc------------
Confidence 99997766 76 9999999999999975 3688999999988655432233332111
Q ss_pred hHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHh--------------cCCCCcchHHHHHHHHHHHHHH
Q 006254 319 NEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALR--------------GGCQGHRAELYAARVAKCLAAL 384 (653)
Q Consensus 319 ~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~--------------~~i~s~R~~i~llr~Ara~Aal 384 (653)
. .......+.+...+..+++..-.+.+++++.++|.+++.. ....|.|+.+.++|+|+|+|.+
T Consensus 389 -~--~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L 465 (506)
T 3f8t_A 389 -Q--DTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARM 465 (506)
T ss_dssp --------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred -c--cCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHH
Confidence 0 1122334677888888884444678999999999886432 1235899999999999999999
Q ss_pred cCCCCccHHHHHHHHHHHcC
Q 006254 385 EGREKVNVDDLKKAVELVIL 404 (653)
Q Consensus 385 ~gr~~Vt~eDv~~A~~lvl~ 404 (653)
+|+++|+++||.+|+.++..
T Consensus 466 ~gR~~V~~eDV~~Ai~L~~~ 485 (506)
T 3f8t_A 466 RLSDDVEPEDVDIAAELVDW 485 (506)
T ss_dssp TTCSEECHHHHHHHHHHHHH
T ss_pred cCcCCCCHHHHHHHHHHHHH
Confidence 99999999999999998765
No 4
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.94 E-value=1.7e-26 Score=257.38 Aligned_cols=260 Identities=18% Similarity=0.197 Sum_probs=191.4
Q ss_pred CceechHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccccccccccccc
Q 006254 95 AAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTA 174 (653)
Q Consensus 95 ~~IvGq~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~~~~ 174 (653)
..|+|++.+++.+..++. ..++|||+||||||||++|++|+..+..
T Consensus 22 ~~ivGq~~~i~~l~~al~--~~~~VLL~GpPGtGKT~LAraLa~~l~~-------------------------------- 67 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAAL--SGESVFLLGPPGIAKSLIARRLKFAFQN-------------------------------- 67 (500)
T ss_dssp TTCSSCHHHHHHHHHHHH--HTCEEEEECCSSSSHHHHHHHGGGGBSS--------------------------------
T ss_pred hhhHHHHHHHHHHHHHHh--cCCeeEeecCchHHHHHHHHHHHHHHhh--------------------------------
Confidence 368999999999988776 4589999999999999999999998741
Q ss_pred ccccccccCCCeEeCCCCC-cccceeeecchhhhhccCCc-cccccccccccCceEEecccccCCHHHHHHHHHHHHcCc
Q 006254 175 GNLKTQIARSPFVQIPLGV-TEDRLIGSVDVEESVKTGTT-VFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGV 252 (653)
Q Consensus 175 ~~~~~~~~~~~fv~l~~~~-~~~~l~G~~d~~~~~~~g~~-~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~l~~g~ 252 (653)
..+|..+.... +.+.++|.++.......|.. .+..|.+. ..+|||||||+++++.+++.|+.+|+++.
T Consensus 68 --------~~~f~~~~~~~~t~~dL~G~~~~~~~~~~g~~~~~~~g~l~--~~~IL~IDEI~r~~~~~q~~LL~~lee~~ 137 (500)
T 3nbx_X 68 --------ARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYERLTSGYLP--EAEIVFLDEIWKAGPAILNTLLTAINERQ 137 (500)
T ss_dssp --------CCEEEEECCTTCCHHHHHCCBC----------CBCCTTSGG--GCSEEEEESGGGCCHHHHHHHHHHHHSSE
T ss_pred --------hhHHHHHHHhcCCHHHhcCcccHHHHhhchhHHhhhccCCC--cceeeeHHhHhhhcHHHHHHHHHHHHHHh
Confidence 23444433332 55788887654433333433 24455543 35799999999999999999999999998
Q ss_pred eEEeeCCeeEEeecCcEEEEEecC--CCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhh
Q 006254 253 NIVEREGISFKHPCKPLLIATYNP--EEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETD 330 (653)
Q Consensus 253 ~~v~r~G~s~~~p~~~~lIattNp--~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~ 330 (653)
+. ..|.....|.+| +|+|||+ +.+.++++|+|||.+.+.++.|...+++.+|+.........+. .....
T Consensus 138 v~--i~G~~~~~~~~~-iI~ATN~lpe~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~------~~~~~ 208 (500)
T 3nbx_X 138 FR--NGAHVEKIPMRL-LVAASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPV------PDALQ 208 (500)
T ss_dssp EE--CSSSEEECCCCE-EEEEESSCCCTTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCS------CTTTS
T ss_pred cc--CCCCcCCcchhh-hhhccccCCCccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCC------Cccce
Confidence 54 478888888887 5566674 4466789999999998999877666777888763211111110 00111
Q ss_pred HHHHHHHHHHhhhcccCCCHHHHHHHHHHHHh------cCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHcC
Q 006254 331 LAKTQIILAREYLKDVAIGREQLKYLVMEALR------GGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVIL 404 (653)
Q Consensus 331 ~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~------~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~ 404 (653)
.....+...+.....+.+++++++++++++.. ....|.|+.+.+++.|+++|.+.|+++|+++||. ++..+|.
T Consensus 209 ~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~-~a~~vL~ 287 (500)
T 3nbx_X 209 VTDEEYERWQKEIGEITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI-LLKDCLW 287 (500)
T ss_dssp BCHHHHHHHHHHHTTCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG-GGGGTSC
T ss_pred ecHHHHHHHHhcCCcccCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH-HHHhhhh
Confidence 22456677777888899999999999998843 1234899999999999999999999999999999 9999999
Q ss_pred CCcc
Q 006254 405 PRSI 408 (653)
Q Consensus 405 hR~~ 408 (653)
||..
T Consensus 288 hr~~ 291 (500)
T 3nbx_X 288 YDAQ 291 (500)
T ss_dssp SSHH
T ss_pred cCch
Confidence 9964
No 5
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.94 E-value=6.8e-27 Score=266.66 Aligned_cols=260 Identities=20% Similarity=0.197 Sum_probs=197.1
Q ss_pred CceechHHHHHHHHHhcccCC-----------CceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccc
Q 006254 95 AAVVGQDAIKTALLLGAIDRE-----------IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWED 163 (653)
Q Consensus 95 ~~IvGq~~~k~aL~~~av~p~-----------~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~ 163 (653)
..|+|++.+|++++++++... ..+|||+||||||||++|++++..+++.
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~-------------------- 354 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRA-------------------- 354 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCE--------------------
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCc--------------------
Confidence 579999999999977666321 1179999999999999999999988631
Q ss_pred cccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHH
Q 006254 164 GLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNL 243 (653)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~ 243 (653)
+.....+.+...+.|... ....+|.....+|.+..|++||||||||+.++++.++.
T Consensus 355 ----------------------~~~~~~~~~~~~l~~~~~--~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~~~q~~ 410 (595)
T 3f9v_A 355 ----------------------VYTTGKGSTAAGLTAAVV--REKGTGEYYLEAGALVLADGGIAVIDEIDKMRDEDRVA 410 (595)
T ss_dssp ----------------------ECCCTTCSTTTTSEEECS--SGGGTSSCSEEECHHHHHSSSEECCTTTTCCCSHHHHH
T ss_pred ----------------------eecCCCccccccccceee--eccccccccccCCeeEecCCCcEEeehhhhCCHhHhhh
Confidence 111112233344555432 33456778889999999999999999999999999999
Q ss_pred HHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCC------------cccHHHHhhhcccccccCCCCHhhHHHHHHHH
Q 006254 244 LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG------------VVREHLLDRIAINLSADLPMTFEDRVAAVGIA 311 (653)
Q Consensus 244 Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg------------~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~ 311 (653)
|+.+|+++.+++.+.|.....+.++.+||||||..| .|+++|+|||++++.+...++.+ ...|.+..
T Consensus 411 Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~i 489 (595)
T 3f9v_A 411 IHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYI 489 (595)
T ss_dssp HHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHH
T ss_pred hHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHH
Confidence 999999999999999999999999999999999764 68899999998765655344545 55555543
Q ss_pred HHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHh-----------cCCCCcchHHHHHHHHHH
Q 006254 312 TQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALR-----------GGCQGHRAELYAARVAKC 380 (653)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~-----------~~i~s~R~~i~llr~Ara 380 (653)
....... .....-..+.+...+..++..+. ..+++++.+.|.++... ....+.|..+.++++|++
T Consensus 490 l~~~~~~---~~~~~l~~~~l~~~i~~ar~~~~-p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a 565 (595)
T 3f9v_A 490 LDVHSGK---STKNIIDIDTLRKYIAYARKYVT-PKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEA 565 (595)
T ss_dssp HTTTCCC---SSSSTTCCTTTHHHHHHHHHHHC-CCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHH
T ss_pred HHHhhcc---ccccCCCHHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHH
Confidence 3221110 01112233456677777776543 27888899999998754 234589999999999999
Q ss_pred HHHHcCCCCccHHHHHHHHHHHc
Q 006254 381 LAALEGREKVNVDDLKKAVELVI 403 (653)
Q Consensus 381 ~Aal~gr~~Vt~eDv~~A~~lvl 403 (653)
+|.+.+++.|+.+||.+|+.+..
T Consensus 566 ~A~l~~~~~V~~~dv~~Ai~l~~ 588 (595)
T 3f9v_A 566 YAKMALKAEVTREDAERAINIMR 588 (595)
T ss_dssp HHHTTSSCCSSHHHHHHHHHHHH
T ss_pred HHHHhCcCCCCHHHHHHHHHHHH
Confidence 99999999999999999998763
No 6
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.90 E-value=3.3e-24 Score=225.29 Aligned_cols=232 Identities=24% Similarity=0.301 Sum_probs=175.8
Q ss_pred CceechHHHHHHH--HHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccccccccccc
Q 006254 95 AAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYD 172 (653)
Q Consensus 95 ~~IvGq~~~k~aL--~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~~ 172 (653)
++|+|++..++.+ .+..+.+...+|||+||||||||++|++||..+++
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~------------------------------ 51 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSAR------------------------------ 51 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSC------------------------------
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCcc------------------------------
Confidence 3589999887777 33344567789999999999999999999998752
Q ss_pred ccccccccccCCCeEeCCCCCc-----ccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHHHH
Q 006254 173 TAGNLKTQIARSPFVQIPLGVT-----EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNV 247 (653)
Q Consensus 173 ~~~~~~~~~~~~~fv~l~~~~~-----~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~ 247 (653)
.+.||+.+++... ++.+||+. ++.++|......|.+..+++|+||||||+.++...|..|+.+
T Consensus 52 ---------~~~~~v~v~~~~~~~~l~~~~lfg~~---~g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~~~q~~Ll~~ 119 (304)
T 1ojl_A 52 ---------SDRPLVTLNCAALNESLLESELFGHE---KGAFTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRA 119 (304)
T ss_dssp ---------SSSCCCEEECSSCCHHHHHHHHTCCC---SSCCC---CCCCCHHHHHTTSEEEEESCTTCCHHHHHHHHHH
T ss_pred ---------cCCCeEEEeCCCCChHHHHHHhcCcc---ccccCchhhhhcCHHHhcCCCEEEEeccccCCHHHHHHHHHH
Confidence 2456666554443 45678863 567777777788999999999999999999999999999999
Q ss_pred HHcCceEEeeCCeeEEeecCcEEEEEecCC------CCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHH
Q 006254 248 LTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEV 321 (653)
Q Consensus 248 l~~g~~~v~r~G~s~~~p~~~~lIattNp~------eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~ 321 (653)
++++. +.+.|.....+.++.+|+|||.+ +|.++++|++||..+ .+..|+..++..+|..++.+|......
T Consensus 120 l~~~~--~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~~~-~i~lPpL~eR~edi~~l~~~~l~~~~~- 195 (304)
T 1ojl_A 120 IQERE--VQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVV-AIEMPSLRQRREDIPLLADHFLRRFAE- 195 (304)
T ss_dssp HHSSB--CCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHHHHSSE-EEECCCSGGGGGGHHHHHHHHHHHHHH-
T ss_pred HhcCE--eeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHhhcCee-EEeccCHHHhHhhHHHHHHHHHHHHHH-
Confidence 99987 67889988888999999999974 367999999999844 666677887778888777666432110
Q ss_pred hhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHH
Q 006254 322 FKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLK 396 (653)
Q Consensus 322 ~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~ 396 (653)
+.......+++++++.|..+.|.+|+ |...++++.+.. +.....|+.+|+.
T Consensus 196 ------------------~~~~~~~~~s~~a~~~L~~~~wpGnv---ReL~~~l~~~~~---~~~~~~i~~~~l~ 246 (304)
T 1ojl_A 196 ------------------RNRKVVKGFTPQAMDLLIHYDWPGNI---RELENAIERAVV---LLTGEYISERELP 246 (304)
T ss_dssp ------------------HTTCCCCCBCHHHHHHHHHCCCSSHH---HHHHHHHHHHHH---HCCSSSBCGGGSC
T ss_pred ------------------HhccCccCCCHHHHHHHHcCCCCCCH---HHHHHHHHHHHH---hCCCCcccHHhhh
Confidence 11123467999999999999988765 777777665443 3445678888774
No 7
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.90 E-value=7e-24 Score=217.50 Aligned_cols=233 Identities=24% Similarity=0.300 Sum_probs=157.6
Q ss_pred CCCCceechHHHHHHHH--HhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccc
Q 006254 92 FPLAAVVGQDAIKTALL--LGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKA 169 (653)
Q Consensus 92 ~~f~~IvGq~~~k~aL~--~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~ 169 (653)
++|+.|+|++..++.+. +..+.....+|||+||||||||++|++|+..+++
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~--------------------------- 55 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSR--------------------------- 55 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTT---------------------------
T ss_pred cccccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCc---------------------------
Confidence 57899999998877663 3333445689999999999999999999998752
Q ss_pred cccccccccccccCCCeEeCCCCCc-----ccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHH
Q 006254 170 EYDTAGNLKTQIARSPFVQIPLGVT-----EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLL 244 (653)
Q Consensus 170 ~~~~~~~~~~~~~~~~fv~l~~~~~-----~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~L 244 (653)
.+.+|+.++++.. ++.++|.. ++.+.|......|++..+++|+||||||+.++.+.++.|
T Consensus 56 ------------~~~~~~~v~~~~~~~~~~~~~l~g~~---~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~~~q~~L 120 (265)
T 2bjv_A 56 ------------WQGPFISLNCAALNENLLDSELFGHE---AGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL 120 (265)
T ss_dssp ------------TTSCEEEEEGGGSCHHHHHHHHHCCC------------CCCCHHHHTTTSEEEEESGGGSCHHHHHHH
T ss_pred ------------cCCCeEEEecCCCChhHHHHHhcCCc---ccccccccccccchhhhcCCcEEEEechHhcCHHHHHHH
Confidence 2356776655443 34566653 455566666678999999999999999999999999999
Q ss_pred HHHHHcCceEEeeCCeeEEeecCcEEEEEecCC------CCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhh
Q 006254 245 LNVLTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERS 318 (653)
Q Consensus 245 l~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~------eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~ 318 (653)
+.+++++. +.+.|.....+.++.+|+|||+. .+.++++|++||... .+..|+..+++.+|..++.+|....
T Consensus 121 l~~l~~~~--~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~~-~i~lp~L~~R~~di~~l~~~~l~~~ 197 (265)
T 2bjv_A 121 LRVIEYGE--LERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDALAFD-VVQLPPLRERESDIMLMAEYFAIQM 197 (265)
T ss_dssp HHHHHHCE--ECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCSE-EEECCCGGGCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCC--eecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHHhhcCc-EEeCCChhhhhHHHHHHHHHHHHHH
Confidence 99999997 67888887788899999999975 356899999999753 5555666666677776665553211
Q ss_pred hHHhhhhhhhhhHHHHHHHHHHhh-hcc-cCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHH
Q 006254 319 NEVFKMVEEETDLAKTQIILAREY-LKD-VAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDL 395 (653)
Q Consensus 319 ~~~~~~~~~~~~~l~~~i~~ar~~-l~~-v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv 395 (653)
++.. ... ..+++++++.|..+.|.+|+ |...++++.+-..+ ....|+.+|+
T Consensus 198 --------------------~~~~~~~~~~~~~~~a~~~L~~~~~~gn~---reL~~~l~~~~~~~---~~~~i~~~~l 250 (265)
T 2bjv_A 198 --------------------CREIKLPLFPGFTERARETLLNYRWPGNI---RELKNVVERSVYRH---GTSDYPLDDI 250 (265)
T ss_dssp --------------------HHHTTCSSCCCBCHHHHHHHHHSCCTTHH---HHHHHHHHHHHHHH---CCSSSCBCCC
T ss_pred --------------------HHHhCCCcccCcCHHHHHHHHhCCCCCCH---HHHHHHHHHHHHhC---CCCcCcHHHc
Confidence 1111 111 37999999999988887754 76667665544333 3346666655
No 8
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.90 E-value=1.8e-23 Score=226.93 Aligned_cols=233 Identities=22% Similarity=0.288 Sum_probs=189.3
Q ss_pred CCceechHHHHHHH--HHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccccc
Q 006254 94 LAAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEY 171 (653)
Q Consensus 94 f~~IvGq~~~k~aL--~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~ 171 (653)
+..++|++..++.+ .+..+.+...+|||.|++||||+++|++||...++
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r----------------------------- 186 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDR----------------------------- 186 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTT-----------------------------
T ss_pred chhhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhcCC-----------------------------
Confidence 56788888766666 34455677889999999999999999999998762
Q ss_pred cccccccccccCCCeEeCCCCC-----cccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHHH
Q 006254 172 DTAGNLKTQIARSPFVQIPLGV-----TEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLN 246 (653)
Q Consensus 172 ~~~~~~~~~~~~~~fv~l~~~~-----~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~ 246 (653)
.+.||+.+++.. .+++|||+. ++.++|.....+|++..|++|+||||||+.|+.++|..|++
T Consensus 187 ----------~~~~fv~v~~~~~~~~~~~~elfg~~---~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~q~~Ll~ 253 (387)
T 1ny5_A 187 ----------SKEPFVALNVASIPRDIFEAELFGYE---KGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLR 253 (387)
T ss_dssp ----------TTSCEEEEETTTSCHHHHHHHHHCBC---TTSSTTCCSCBCCHHHHTTTSEEEEESGGGCCHHHHHHHHH
T ss_pred ----------CCCCeEEEecCCCCHHHHHHHhcCCC---CCCCCCcccccCCceeeCCCcEEEEcChhhCCHHHHHHHHH
Confidence 356787766654 356889974 78889988889999999999999999999999999999999
Q ss_pred HHHcCceEEeeCCeeEEeecCcEEEEEecC------CCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhH
Q 006254 247 VLTEGVNIVEREGISFKHPCKPLLIATYNP------EEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNE 320 (653)
Q Consensus 247 ~l~~g~~~v~r~G~s~~~p~~~~lIattNp------~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~ 320 (653)
+++++. +.|.|.....+.++++|+|||. .+|.++++|++|+... .+..|+.++++.||..++.+|.+..+
T Consensus 254 ~l~~~~--~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~rl~~~-~i~lPpLreR~~Di~~l~~~~l~~~~- 329 (387)
T 1ny5_A 254 VIESGK--FYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVI-EIEIPPLRERKEDIIPLANHFLKKFS- 329 (387)
T ss_dssp HHHHSE--ECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTTE-EEECCCGGGCHHHHHHHHHHHHHHHH-
T ss_pred HHhcCc--EEeCCCCceeeccEEEEEeCCCCHHHHHHcCCccHHHHHhhcCC-eecCCcchhccccHHHHHHHHHHHHH-
Confidence 999998 7899999999999999999997 3588999999999877 67778899999999999888854321
Q ss_pred HhhhhhhhhhHHHHHHHHHHhhh-cccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHH
Q 006254 321 VFKMVEEETDLAKTQIILAREYL-KDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKK 397 (653)
Q Consensus 321 ~~~~~~~~~~~l~~~i~~ar~~l-~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~ 397 (653)
+..- +...+++++++.|..+.|.+|+ |...++++.|-. +.....|+.+|+..
T Consensus 330 -------------------~~~~~~~~~~~~~a~~~l~~~~wpGNv---reL~~~i~~~~~---~~~~~~i~~~~l~~ 382 (387)
T 1ny5_A 330 -------------------RKYAKEVEGFTKSAQELLLSYPWYGNV---RELKNVIERAVL---FSEGKFIDRGELSC 382 (387)
T ss_dssp -------------------HHTTCCCCEECHHHHHHHHHSCCTTHH---HHHHHHHHHHHH---HCCSSEECHHHHHH
T ss_pred -------------------HHcCCCCCCCCHHHHHHHHhCCCCcHH---HHHHHHHHHHHH---hCCCCcCcHHHCcH
Confidence 1122 2245999999999999999876 666666655443 33446899999854
No 9
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.88 E-value=5.2e-23 Score=221.72 Aligned_cols=222 Identities=25% Similarity=0.306 Sum_probs=177.7
Q ss_pred CceechHHHHHHH--HHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccccccccccc
Q 006254 95 AAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYD 172 (653)
Q Consensus 95 ~~IvGq~~~k~aL--~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~~ 172 (653)
..++|++..+..+ .+..+.+...+|||.|++||||+++|+++|...++... ...+||.
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~--fv~vnc~------------------ 188 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSGRKGA--FVDLNCA------------------ 188 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHCCCSC--EEEEESS------------------
T ss_pred ccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhccccCC--cEEEEcc------------------
Confidence 4688988776665 34455667788999999999999999999998763211 2223330
Q ss_pred ccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHHHHHHcCc
Q 006254 173 TAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGV 252 (653)
Q Consensus 173 ~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~l~~g~ 252 (653)
.++....+++|||+. ++.++|....++|.+..|++|+||||||+.|+..+|..|+.++++|.
T Consensus 189 ---------------~~~~~~~~~~lfg~~---~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~Q~~Ll~~l~~~~ 250 (368)
T 3dzd_A 189 ---------------SIPQELAESELFGHE---KGAFTGALTRKKGKLELADQGTLFLDEVGELDQRVQAKLLRVLETGS 250 (368)
T ss_dssp ---------------SSCTTTHHHHHHEEC---SCSSSSCCCCEECHHHHTTTSEEEEETGGGSCHHHHHHHHHHHHHSE
T ss_pred ---------------cCChHHHHHHhcCcc---ccccCCcccccCChHhhcCCCeEEecChhhCCHHHHHHHHHHHHhCC
Confidence 134556677899974 78899998889999999999999999999999999999999999998
Q ss_pred eEEeeCCeeEEeecCcEEEEEecCC------CCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhhh
Q 006254 253 NIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVE 326 (653)
Q Consensus 253 ~~v~r~G~s~~~p~~~~lIattNp~------eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~ 326 (653)
+.+.|.....+.++++|++||.+ +|.|+++|++|+..+ .+..|+.++++.||..++.+|....+.
T Consensus 251 --~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~~rl~~~-~i~lPpLreR~~Di~~l~~~~l~~~~~------ 321 (368)
T 3dzd_A 251 --FTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLYYRLSVF-QIYLPPLRERGKDVILLAEYFLKKFAK------ 321 (368)
T ss_dssp --ECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTSE-EEECCCGGGSTTHHHHHHHHHHHHHHH------
T ss_pred --cccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHHHhCCe-EEeCCChhhchhhHHHHHHHHHHHHHH------
Confidence 78889988899999999999974 478999999999887 667788999999999988888543211
Q ss_pred hhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 006254 327 EETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAK 379 (653)
Q Consensus 327 ~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ar 379 (653)
+.....+.+++++++.|..+.|++|+ |...++++.|-
T Consensus 322 -------------~~~~~~~~~~~~a~~~L~~~~wpGNv---reL~n~i~~~~ 358 (368)
T 3dzd_A 322 -------------EYKKNCFELSEETKEYLMKQEWKGNV---RELKNLIERAV 358 (368)
T ss_dssp -------------HTTCCCCCBCHHHHHHHHTCCCTTHH---HHHHHHHHHHH
T ss_pred -------------HcCCCCCCcCHHHHHHHHhCCCCcHH---HHHHHHHHHHH
Confidence 11223467999999999999999987 77777765543
No 10
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.87 E-value=1.7e-21 Score=222.93 Aligned_cols=285 Identities=21% Similarity=0.258 Sum_probs=189.2
Q ss_pred CCCCCCCCceechHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcc-ccccc
Q 006254 88 GRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEW-EDGLD 166 (653)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~-~~~~~ 166 (653)
+.++..|++++|++.+++.+..++. ...+|+|+||+||||||+|++|+..+++.. ...+.+.|++.+.... +..+.
T Consensus 34 ~~rp~~l~~i~G~~~~l~~l~~~i~--~g~~vll~Gp~GtGKTtlar~ia~~l~~~~-~~~~~~~~~~~~~~~p~i~~~p 110 (604)
T 3k1j_A 34 EVPEKLIDQVIGQEHAVEVIKTAAN--QKRHVLLIGEPGTGKSMLGQAMAELLPTET-LEDILVFPNPEDENMPRIKTVP 110 (604)
T ss_dssp CCCSSHHHHCCSCHHHHHHHHHHHH--TTCCEEEECCTTSSHHHHHHHHHHTSCCSS-CEEEEEECCTTCTTSCEEEEEE
T ss_pred cccccccceEECchhhHhhcccccc--CCCEEEEEeCCCCCHHHHHHHHhccCCccc-CCeEEEeCCcccccCCcEEEEe
Confidence 4567789999999999999877655 347899999999999999999999997532 1223445555432211 11110
Q ss_pred ccc----------------------------ccccccc-ccccccCCCeEeCCCCCcccceeeecchh----hhhccCC-
Q 006254 167 EKA----------------------------EYDTAGN-LKTQIARSPFVQIPLGVTEDRLIGSVDVE----ESVKTGT- 212 (653)
Q Consensus 167 ~~~----------------------------~~~~~~~-~~~~~~~~~fv~l~~~~~~~~l~G~~d~~----~~~~~g~- 212 (653)
... ....... .+......+++.. ...+...++|.++.. .++++|.
T Consensus 111 ~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~~~~~~~L~G~~~~~~~~~g~~~~g~~ 189 (604)
T 3k1j_A 111 ACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-TGAHAGALLGDVRHDPFQSGGLGTPAH 189 (604)
T ss_dssp TTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-TTCCHHHHHCEECCCCC----CCCCGG
T ss_pred cchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-CCCCHHhcCceEEechhhcCCcccccc
Confidence 000 0000000 0001123455544 345566788876432 2233332
Q ss_pred ccccccccccccCceEEecccccCCHHHHHHHHHHHHcCceEEeeCCe----------eEEeecCcEEEEEecCCC-Ccc
Q 006254 213 TVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGI----------SFKHPCKPLLIATYNPEE-GVV 281 (653)
Q Consensus 213 ~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~l~~g~~~v~r~G~----------s~~~p~~~~lIattNp~e-g~l 281 (653)
....+|.+..|++|+|||||++.|++..++.|+.+|+++.+. ..|. ....|.+|.||+|||++. ..+
T Consensus 190 ~~i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~--~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~l 267 (604)
T 3k1j_A 190 ERVEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFP--ITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKM 267 (604)
T ss_dssp GGEECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEEC--CBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHHHS
T ss_pred ccccCceeeecCCCEEEEechhhCCHHHHHHHHHHHHcCcEE--ecccccccccccCCCCccceeEEEEEecCHHHHhhc
Confidence 345899999999999999999999999999999999999844 4454 556789999999999753 479
Q ss_pred cHHHHhhhcc---cccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHH-HHhhhcccCCCHHHHHHHH
Q 006254 282 REHLLDRIAI---NLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIIL-AREYLKDVAIGREQLKYLV 357 (653)
Q Consensus 282 ~~aLldRf~~---~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~-ar~~l~~v~is~~~l~~l~ 357 (653)
+++|++||.+ .+.+. ...+...+.+. .|.. .+.. .........+++++++.|+
T Consensus 268 ~~~l~~R~~v~~i~i~l~--~~~~~~~~~~~---~~l~------------------~~~~~~~~~~~~~~ls~eAl~~Li 324 (604)
T 3k1j_A 268 HPALRSRIRGYGYEVYMR--TTMPDTIENRR---KLVQ------------------FVAQEVKRDGKIPHFTKEAVEEIV 324 (604)
T ss_dssp CHHHHHHHHHHSEEEECC--SEEECCHHHHH---HHHH------------------HHHHHHHHHCSSCCBBHHHHHHHH
T ss_pred CHHHHHHhhccceEeecc--ccccCCHHHHH---HHHH------------------HHHHHHhhccCcccCCHHHHHHHH
Confidence 9999999973 44332 21121111111 1110 0110 1111123579999999999
Q ss_pred HHHHhc-CCC-----CcchHHHHHHHHHHHHHHcCCCCccHHHHHHHHHH
Q 006254 358 MEALRG-GCQ-----GHRAELYAARVAKCLAALEGREKVNVDDLKKAVEL 401 (653)
Q Consensus 358 ~~~~~~-~i~-----s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~l 401 (653)
+++++. |.. ..|....+++.|.++|..+++..|+.+||.+|+..
T Consensus 325 ~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 325 REAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 998753 322 57999999999999999999999999999999965
No 11
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.84 E-value=5.4e-21 Score=206.04 Aligned_cols=218 Identities=19% Similarity=0.165 Sum_probs=159.0
Q ss_pred CCCCCCCCceechHHHHHHHHHhcccC-------------CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCC
Q 006254 88 GRQFFPLAAVVGQDAIKTALLLGAIDR-------------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANAD 154 (653)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~~~av~p-------------~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~ 154 (653)
+.+..+|++|.|.+.+|+.|..+...| ...||||+||||||||++|+++|..+
T Consensus 141 ~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~-------------- 206 (405)
T 4b4t_J 141 KVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT-------------- 206 (405)
T ss_dssp CSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH--------------
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh--------------
Confidence 457789999999999999985444332 24789999999999999999999976
Q ss_pred CCCCCcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccc---cCceEEec
Q 006254 155 PTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYID 231 (653)
Q Consensus 155 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~ID 231 (653)
+.+|+.+..+...+.++|.- ++.+ ..+|..| .+.|||||
T Consensus 207 ----------------------------~~~f~~v~~s~l~sk~vGes--e~~v--------r~lF~~Ar~~aP~IIFiD 248 (405)
T 4b4t_J 207 ----------------------------DCKFIRVSGAELVQKYIGEG--SRMV--------RELFVMAREHAPSIIFMD 248 (405)
T ss_dssp ----------------------------TCEEEEEEGGGGSCSSTTHH--HHHH--------HHHHHHHHHTCSEEEEEE
T ss_pred ----------------------------CCCceEEEhHHhhccccchH--HHHH--------HHHHHHHHHhCCceEeee
Confidence 47888888777777788742 1221 1233333 46899999
Q ss_pred ccccCCH--------------HHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHh--hhcccccc
Q 006254 232 EINLLDE--------------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSA 295 (653)
Q Consensus 232 Ei~~l~~--------------~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLld--Rf~~~v~l 295 (653)
||+.+-. .+++.||..|+.-. ...+++|||||| .+..|+++|++ ||+..|++
T Consensus 249 EiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~-----------~~~~V~vIaATN-rpd~LDpAllRpGRfD~~I~i 316 (405)
T 4b4t_J 249 EIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE-----------TSKNIKIIMATN-RLDILDPALLRPGRIDRKIEF 316 (405)
T ss_dssp SSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT-----------CCCCEEEEEEES-CSSSSCHHHHSTTSSCCEEEC
T ss_pred cchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC-----------CCCCeEEEeccC-ChhhCCHhHcCCCcCceEEEc
Confidence 9998731 25677777777322 112578999999 88899999998 99999999
Q ss_pred cCCCCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHH-HHHHHHHHHHhcCCCCcchHHHH
Q 006254 296 DLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGRE-QLKYLVMEALRGGCQGHRAELYA 374 (653)
Q Consensus 296 ~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~-~l~~l~~~~~~~~i~s~R~~i~l 374 (653)
+. |+.+.|.+|++... ....++++ -++.|++.+ ...+....-.+
T Consensus 317 ~l-Pd~~~R~~Il~~~~-------------------------------~~~~l~~dvdl~~lA~~t---~G~SGADi~~l 361 (405)
T 4b4t_J 317 PP-PSVAARAEILRIHS-------------------------------RKMNLTRGINLRKVAEKM---NGCSGADVKGV 361 (405)
T ss_dssp CC-CCHHHHHHHHHHHH-------------------------------TTSBCCSSCCHHHHHHHC---CSCCHHHHHHH
T ss_pred CC-cCHHHHHHHHHHHh-------------------------------cCCCCCccCCHHHHHHHC---CCCCHHHHHHH
Confidence 95 58999999976321 11222221 144554443 33356666677
Q ss_pred HHHHHHHHHHcCCCCccHHHHHHHHHHHcC
Q 006254 375 ARVAKCLAALEGREKVNVDDLKKAVELVIL 404 (653)
Q Consensus 375 lr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~ 404 (653)
++-|.-.|.-+++..|+.+|+..|+..++.
T Consensus 362 ~~eA~~~Air~~~~~vt~~Df~~Al~~v~~ 391 (405)
T 4b4t_J 362 CTEAGMYALRERRIHVTQEDFELAVGKVMN 391 (405)
T ss_dssp HHHHHHHHHHTTCSBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcCHHHHHHHHHHHhC
Confidence 788887888889999999999999998865
No 12
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.83 E-value=3.6e-20 Score=196.24 Aligned_cols=224 Identities=18% Similarity=0.178 Sum_probs=159.5
Q ss_pred cccCCCCCCCCceechHHHHHHHHHhcc-----cCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCC
Q 006254 85 DSYGRQFFPLAAVVGQDAIKTALLLGAI-----DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPD 159 (653)
Q Consensus 85 ~~~~~~~~~f~~IvGq~~~k~aL~~~av-----~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~ 159 (653)
...+.++..|++|+|++.+++.+...+. .+...+|||+||||||||++|++++..+.
T Consensus 19 ~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~------------------ 80 (338)
T 3pfi_A 19 YETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMS------------------ 80 (338)
T ss_dssp ----CCCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTT------------------
T ss_pred hhhccCCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhC------------------
Confidence 3345667789999999999988843322 23456899999999999999999999764
Q ss_pred cccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHH
Q 006254 160 EWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEG 239 (653)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~ 239 (653)
.+|+.+...... ..| + +...+...+++++||||||+.++..
T Consensus 81 ------------------------~~~~~~~~~~~~--~~~--~-----------~~~~~~~~~~~~vl~lDEi~~l~~~ 121 (338)
T 3pfi_A 81 ------------------------ANIKTTAAPMIE--KSG--D-----------LAAILTNLSEGDILFIDEIHRLSPA 121 (338)
T ss_dssp ------------------------CCEEEEEGGGCC--SHH--H-----------HHHHHHTCCTTCEEEEETGGGCCHH
T ss_pred ------------------------CCeEEecchhcc--chh--H-----------HHHHHHhccCCCEEEEechhhcCHH
Confidence 344444332211 011 1 1111122467899999999999999
Q ss_pred HHHHHHHHHHcCceEEeeC------CeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHH
Q 006254 240 ISNLLLNVLTEGVNIVERE------GISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQ 313 (653)
Q Consensus 240 ~~~~Ll~~l~~g~~~v~r~------G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~ 313 (653)
.++.|+.+++++.+.+-.. ......| +|++|++|| ..+.++++|++||+..+.+. +++.+++.+++.....
T Consensus 122 ~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~atn-~~~~l~~~L~~R~~~~i~l~-~~~~~e~~~il~~~~~ 198 (338)
T 3pfi_A 122 IEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLP-KFTLIGATT-RAGMLSNPLRDRFGMQFRLE-FYKDSELALILQKAAL 198 (338)
T ss_dssp HHHHHHHHHHTSCC---------CCCCCCCCC-CCEEEEEES-CGGGSCHHHHTTCSEEEECC-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccchhhcccCccccceecCCC-CeEEEEeCC-CccccCHHHHhhcCEEeeCC-CcCHHHHHHHHHHHHH
Confidence 9999999999987443211 1112233 589999999 56679999999998888998 5577777766552211
Q ss_pred HHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHH
Q 006254 314 FQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVD 393 (653)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~e 393 (653)
...+.+++++++.++. .+.+ ..|....+++.+...|.+.+...|+.+
T Consensus 199 -----------------------------~~~~~~~~~~~~~l~~-~~~G---~~r~l~~~l~~~~~~a~~~~~~~i~~~ 245 (338)
T 3pfi_A 199 -----------------------------KLNKTCEEKAALEIAK-RSRS---TPRIALRLLKRVRDFADVNDEEIITEK 245 (338)
T ss_dssp -----------------------------HTTCEECHHHHHHHHH-TTTT---CHHHHHHHHHHHHHHHHHTTCSEECHH
T ss_pred -----------------------------hcCCCCCHHHHHHHHH-HHCc---CHHHHHHHHHHHHHHHHhhcCCccCHH
Confidence 0135688999998887 4444 469999999999989999999999999
Q ss_pred HHHHHHHH
Q 006254 394 DLKKAVEL 401 (653)
Q Consensus 394 Dv~~A~~l 401 (653)
++..++..
T Consensus 246 ~~~~~~~~ 253 (338)
T 3pfi_A 246 RANEALNS 253 (338)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998865
No 13
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.83 E-value=1.1e-20 Score=204.17 Aligned_cols=219 Identities=19% Similarity=0.192 Sum_probs=157.2
Q ss_pred CCCCCCCCceechHHHHHHHHHhccc----C---------CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCC
Q 006254 88 GRQFFPLAAVVGQDAIKTALLLGAID----R---------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANAD 154 (653)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~~~av~----p---------~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~ 154 (653)
+.+..+|++|.|.+.+|+.|...... | ...||||+||||||||++|++||..+
T Consensus 175 ~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~-------------- 240 (437)
T 4b4t_I 175 KSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT-------------- 240 (437)
T ss_dssp SSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH--------------
T ss_pred cCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh--------------
Confidence 45678999999999999988443322 1 24789999999999999999999986
Q ss_pred CCCCCcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccc---cCceEEec
Q 006254 155 PTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYID 231 (653)
Q Consensus 155 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~ID 231 (653)
+.+|+.+..+...+.++|.- ++.+ ..+|..| .+.|||||
T Consensus 241 ----------------------------~~~fi~v~~s~l~sk~vGes--ek~i--------r~lF~~Ar~~aP~IIfiD 282 (437)
T 4b4t_I 241 ----------------------------SATFLRIVGSELIQKYLGDG--PRLC--------RQIFKVAGENAPSIVFID 282 (437)
T ss_dssp ----------------------------TCEEEEEESGGGCCSSSSHH--HHHH--------HHHHHHHHHTCSEEEEEE
T ss_pred ----------------------------CCCEEEEEHHHhhhccCchH--HHHH--------HHHHHHHHhcCCcEEEEe
Confidence 46888888777777888842 1111 1122222 36799999
Q ss_pred ccccCC--------------HHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHh--hhcccccc
Q 006254 232 EINLLD--------------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSA 295 (653)
Q Consensus 232 Ei~~l~--------------~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLld--Rf~~~v~l 295 (653)
||+.+- ..++..||..|+.-. ...+++|||||| .+..|+++|++ ||+..|++
T Consensus 283 EiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~-----------~~~~ViVIaATN-rpd~LDpALlRpGRfD~~I~v 350 (437)
T 4b4t_I 283 EIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD-----------DRGDVKVIMATN-KIETLDPALIRPGRIDRKILF 350 (437)
T ss_dssp EESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCC-----------CSSSEEEEEEES-CSTTCCTTSSCTTTEEEEECC
T ss_pred hhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcC-----------CCCCEEEEEeCC-ChhhcCHHHhcCCceeEEEEc
Confidence 999762 124556666666321 123578999999 88899999998 99999999
Q ss_pred cCCCCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHH-HHHHHHHHHHhcCCCCcchHHHH
Q 006254 296 DLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGRE-QLKYLVMEALRGGCQGHRAELYA 374 (653)
Q Consensus 296 ~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~-~l~~l~~~~~~~~i~s~R~~i~l 374 (653)
+. ++.+.|.+|++... ....++++ -++.|+..+ ...+.+..-.+
T Consensus 351 ~l-Pd~~~R~~Il~~~l-------------------------------~~~~l~~dvdl~~LA~~T---~GfSGADI~~l 395 (437)
T 4b4t_I 351 EN-PDLSTKKKILGIHT-------------------------------SKMNLSEDVNLETLVTTK---DDLSGADIQAM 395 (437)
T ss_dssp CC-CCHHHHHHHHHHHH-------------------------------TTSCBCSCCCHHHHHHHC---CSCCHHHHHHH
T ss_pred CC-cCHHHHHHHHHHHh-------------------------------cCCCCCCcCCHHHHHHhC---CCCCHHHHHHH
Confidence 95 59999999976321 11222222 144554443 33356666677
Q ss_pred HHHHHHHHHHcCCCCccHHHHHHHHHHHcCC
Q 006254 375 ARVAKCLAALEGREKVNVDDLKKAVELVILP 405 (653)
Q Consensus 375 lr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~h 405 (653)
++-|.-.|.-+++..|+.+|+..|++.+.+.
T Consensus 396 ~~eA~~~Air~~~~~It~eDf~~Al~rv~~~ 426 (437)
T 4b4t_I 396 CTEAGLLALRERRMQVTAEDFKQAKERVMKN 426 (437)
T ss_dssp HHHHHHHHHHTTCSCBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCccCHHHHHHHHHHHhCC
Confidence 8888888888999999999999999987654
No 14
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.83 E-value=1.9e-20 Score=204.28 Aligned_cols=220 Identities=19% Similarity=0.154 Sum_probs=157.4
Q ss_pred CCCCCCCCceechHHHHHHHHHhccc-------------CCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCC
Q 006254 88 GRQFFPLAAVVGQDAIKTALLLGAID-------------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANAD 154 (653)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~~~av~-------------p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~ 154 (653)
+.+.++|++|.|.+.+|+.|...... +...||||+||||||||++|++||..+
T Consensus 202 e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~-------------- 267 (467)
T 4b4t_H 202 EKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT-------------- 267 (467)
T ss_dssp SSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH--------------
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc--------------
Confidence 45678999999999999988433221 235789999999999999999999987
Q ss_pred CCCCCcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccc---cCceEEec
Q 006254 155 PTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYID 231 (653)
Q Consensus 155 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~ID 231 (653)
+.+|+.+..+...+.++|.- ++.+ ..+|..| .+.|||||
T Consensus 268 ----------------------------~~~fi~vs~s~L~sk~vGes--ek~i--------r~lF~~Ar~~aP~IIfiD 309 (467)
T 4b4t_H 268 ----------------------------DATFIRVIGSELVQKYVGEG--ARMV--------RELFEMARTKKACIIFFD 309 (467)
T ss_dssp ----------------------------TCEEEEEEGGGGCCCSSSHH--HHHH--------HHHHHHHHHTCSEEEEEE
T ss_pred ----------------------------CCCeEEEEhHHhhcccCCHH--HHHH--------HHHHHHHHhcCCceEeec
Confidence 46788887777777788742 1111 1123322 46799999
Q ss_pred ccccCCH--------------HHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHh--hhcccccc
Q 006254 232 EINLLDE--------------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSA 295 (653)
Q Consensus 232 Ei~~l~~--------------~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLld--Rf~~~v~l 295 (653)
|++.+-. .++..||..|+... ...++++||||| .+..|+++|++ ||+..|++
T Consensus 310 EiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~-----------~~~~ViVIaATN-rpd~LDpALlRpGRFD~~I~i 377 (467)
T 4b4t_H 310 EIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFD-----------PRGNIKVMFATN-RPNTLDPALLRPGRIDRKVEF 377 (467)
T ss_dssp CCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSC-----------CTTTEEEEEECS-CTTSBCHHHHSTTTCCEEECC
T ss_pred ccccccccccCcCCCccHHHHHHHHHHHHHhhccC-----------CCCcEEEEeCCC-CcccCChhhhccccccEEEEe
Confidence 9997621 24566677776322 123578999999 88899999998 99999999
Q ss_pred cCCCCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHH-HHHHHHHHHHhcCCCCcchHHHH
Q 006254 296 DLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGRE-QLKYLVMEALRGGCQGHRAELYA 374 (653)
Q Consensus 296 ~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~-~l~~l~~~~~~~~i~s~R~~i~l 374 (653)
+. ++.+.|.+|++... ..+.+..+ -++.|++.+. ..+.+..-.+
T Consensus 378 ~l-Pd~~~R~~Ilk~~l-------------------------------~~~~l~~dvdl~~LA~~T~---GfSGADI~~l 422 (467)
T 4b4t_H 378 SL-PDLEGRANIFRIHS-------------------------------KSMSVERGIRWELISRLCP---NSTGAELRSV 422 (467)
T ss_dssp CC-CCHHHHHHHHHHHH-------------------------------TTSCBCSSCCHHHHHHHCC---SCCHHHHHHH
T ss_pred CC-cCHHHHHHHHHHHh-------------------------------cCCCCCCCCCHHHHHHHCC---CCCHHHHHHH
Confidence 96 59999999986321 11112211 1445555443 3355666677
Q ss_pred HHHHHHHHHHcCCCCccHHHHHHHHHHHcCCC
Q 006254 375 ARVAKCLAALEGREKVNVDDLKKAVELVILPR 406 (653)
Q Consensus 375 lr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~hR 406 (653)
++-|.-.|.-+++..|+.+|+..|+.-++...
T Consensus 423 ~~eAa~~Air~~~~~it~~Df~~Al~kV~~g~ 454 (467)
T 4b4t_H 423 CTEAGMFAIRARRKVATEKDFLKAVDKVISGY 454 (467)
T ss_dssp HHHHHHHHHHHTCSSBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCccCHHHHHHHHHHHhcCc
Confidence 78888888888999999999999999887643
No 15
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1e-19 Score=198.40 Aligned_cols=221 Identities=17% Similarity=0.176 Sum_probs=157.2
Q ss_pred CCCCCCCCceechHHHHHHHHHhccc-------------CCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCC
Q 006254 88 GRQFFPLAAVVGQDAIKTALLLGAID-------------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANAD 154 (653)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~~~av~-------------p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~ 154 (653)
+.+..+|++|.|.+.+|+.|...+.. +...||||+||||||||++|++||..+
T Consensus 165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~-------------- 230 (428)
T 4b4t_K 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST-------------- 230 (428)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH--------------
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh--------------
Confidence 45678999999999999988433322 124689999999999999999999987
Q ss_pred CCCCCcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccc---cCceEEec
Q 006254 155 PTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYID 231 (653)
Q Consensus 155 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~ID 231 (653)
+.+|+.+..+...+.++|.- ++.+ ..+|..| .+.|||||
T Consensus 231 ----------------------------~~~~~~v~~~~l~~~~~Ge~--e~~i--------r~lF~~A~~~aP~IifiD 272 (428)
T 4b4t_K 231 ----------------------------KAAFIRVNGSEFVHKYLGEG--PRMV--------RDVFRLARENAPSIIFID 272 (428)
T ss_dssp ----------------------------TCEEEEEEGGGTCCSSCSHH--HHHH--------HHHHHHHHHTCSEEEEEE
T ss_pred ----------------------------CCCeEEEecchhhccccchh--HHHH--------HHHHHHHHHcCCCeeech
Confidence 46788887777677777742 1111 1123322 46799999
Q ss_pred ccccCC--------------HHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHh--hhcccccc
Q 006254 232 EINLLD--------------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSA 295 (653)
Q Consensus 232 Ei~~l~--------------~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLld--Rf~~~v~l 295 (653)
|++.+. ..+++.||..|+.-. ...+++|||||| .+..|+++|++ ||+..|++
T Consensus 273 EiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~-----------~~~~v~vI~aTN-~~~~LD~AllRpGRfd~~I~~ 340 (428)
T 4b4t_K 273 EVDSIATKRFDAQTGSDREVQRILIELLTQMDGFD-----------QSTNVKVIMATN-RADTLDPALLRPGRLDRKIEF 340 (428)
T ss_dssp CTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSC-----------SSCSEEEEEEES-CSSSCCHHHHSSSSEEEEEEC
T ss_pred hhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCC-----------CCCCEEEEEecC-ChhhcChhhhcCCcceEEEEc
Confidence 998641 135677888887422 112578999999 88899999998 99999999
Q ss_pred cCCCCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHH-HHHHHHHHHHhcCCCCcchHHHH
Q 006254 296 DLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGRE-QLKYLVMEALRGGCQGHRAELYA 374 (653)
Q Consensus 296 ~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~-~l~~l~~~~~~~~i~s~R~~i~l 374 (653)
+.+++.++|.+|++.... ...+.++ -++.|+..+. ..+.+..-.+
T Consensus 341 p~lPd~~~R~~Il~~~~~-------------------------------~~~l~~~~dl~~lA~~t~---G~sgadi~~l 386 (428)
T 4b4t_K 341 PSLRDRRERRLIFGTIAS-------------------------------KMSLAPEADLDSLIIRND---SLSGAVIAAI 386 (428)
T ss_dssp CSSCCHHHHHHHHHHHHH-------------------------------SSCBCTTCCHHHHHHHTT---TCCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhc-------------------------------CCCCCcccCHHHHHHHCC---CCCHHHHHHH
Confidence 645689999998763211 1122211 1455554433 3355666677
Q ss_pred HHHHHHHHHHcCCCCccHHHHHHHHHHHcCCC
Q 006254 375 ARVAKCLAALEGREKVNVDDLKKAVELVILPR 406 (653)
Q Consensus 375 lr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~hR 406 (653)
++-|.-.|.-+++..|+.+|+.+|+..++...
T Consensus 387 ~~eA~~~a~r~~~~~i~~~d~~~A~~~~~~~~ 418 (428)
T 4b4t_K 387 MQEAGLRAVRKNRYVILQSDLEEAYATQVKTD 418 (428)
T ss_dssp HHHHHHHHHHTTCSSBCHHHHHHHHHHHSCSC
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHhhCcc
Confidence 77887788889999999999999998776544
No 16
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.1e-19 Score=198.44 Aligned_cols=220 Identities=20% Similarity=0.189 Sum_probs=155.7
Q ss_pred CCCCCCCCceechHHHHHHHHHhcccC-------------CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCC
Q 006254 88 GRQFFPLAAVVGQDAIKTALLLGAIDR-------------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANAD 154 (653)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~~~av~p-------------~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~ 154 (653)
+.+..+|++|.|.+.+|+.|....+.| ...||||+||||||||++|++||..+
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~-------------- 239 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT-------------- 239 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH--------------
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh--------------
Confidence 456789999999999999985443322 24689999999999999999999986
Q ss_pred CCCCCcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccc---cCceEEec
Q 006254 155 PTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYID 231 (653)
Q Consensus 155 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~ID 231 (653)
+.+|+.+..+...+.++|.- ++.+ ..+|..| .+.|||||
T Consensus 240 ----------------------------~~~f~~v~~s~l~~~~vGes--e~~i--------r~lF~~A~~~aP~IifiD 281 (434)
T 4b4t_M 240 ----------------------------NATFLKLAAPQLVQMYIGEG--AKLV--------RDAFALAKEKAPTIIFID 281 (434)
T ss_dssp ----------------------------TCEEEEEEGGGGCSSCSSHH--HHHH--------HHHHHHHHHHCSEEEEEE
T ss_pred ----------------------------CCCEEEEehhhhhhcccchH--HHHH--------HHHHHHHHhcCCeEEeec
Confidence 46888888777777788842 1111 1223222 46799999
Q ss_pred ccccCC-----------H---HHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHh--hhcccccc
Q 006254 232 EINLLD-----------E---GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSA 295 (653)
Q Consensus 232 Ei~~l~-----------~---~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLld--Rf~~~v~l 295 (653)
||+.+- . .+...||..|+.-. ...+++|||||| .+..|+++|++ ||+..|++
T Consensus 282 EiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~-----------~~~~ViVIaaTN-rp~~LD~AllRpGRfD~~I~i 349 (434)
T 4b4t_M 282 ELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS-----------SDDRVKVLAATN-RVDVLDPALLRSGRLDRKIEF 349 (434)
T ss_dssp CTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC-----------SSCSSEEEEECS-SCCCCCTTTCSTTSEEEEEEC
T ss_pred chhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC-----------CCCCEEEEEeCC-CchhcCHhHhcCCceeEEEEe
Confidence 998651 1 23456777776321 112578999999 88899999988 99999999
Q ss_pred cCCCCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 006254 296 DLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAA 375 (653)
Q Consensus 296 ~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~ll 375 (653)
+. |+.+.|.+|++.... ...-.-.++ ++.|+..+ ...+.+..-.++
T Consensus 350 ~l-Pd~~~R~~Il~~~~~---------------------------~~~~~~dvd---l~~lA~~t---~G~sGADi~~l~ 395 (434)
T 4b4t_M 350 PL-PSEDSRAQILQIHSR---------------------------KMTTDDDIN---WQELARST---DEFNGAQLKAVT 395 (434)
T ss_dssp CC-CCHHHHHHHHHHHHH---------------------------HSCBCSCCC---HHHHHHHC---SSCCHHHHHHHH
T ss_pred CC-cCHHHHHHHHHHHhc---------------------------CCCCCCcCC---HHHHHHhC---CCCCHHHHHHHH
Confidence 95 599999999863211 111011121 34454433 333566666777
Q ss_pred HHHHHHHHHcCCCCccHHHHHHHHHHHcCC
Q 006254 376 RVAKCLAALEGREKVNVDDLKKAVELVILP 405 (653)
Q Consensus 376 r~Ara~Aal~gr~~Vt~eDv~~A~~lvl~h 405 (653)
+-|.-.|.-+++..|+.+|+..|+..+.+.
T Consensus 396 ~eA~~~a~r~~~~~i~~~Df~~Al~~v~~~ 425 (434)
T 4b4t_M 396 VEAGMIALRNGQSSVKHEDFVEGISEVQAR 425 (434)
T ss_dssp HHHHHHHHHHTCSSBCHHHHHHHHHSCSSS
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHHHHhCC
Confidence 778778888899999999999999876543
No 17
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.80 E-value=2e-19 Score=196.53 Aligned_cols=221 Identities=20% Similarity=0.199 Sum_probs=156.4
Q ss_pred CCCCCCCCceechHHHHHHHHHhcccC-------------CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCC
Q 006254 88 GRQFFPLAAVVGQDAIKTALLLGAIDR-------------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANAD 154 (653)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~~~av~p-------------~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~ 154 (653)
+.+.++|++|.|.+.+|+.|......| ...||||+||||||||++|++||..+
T Consensus 174 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~-------------- 239 (437)
T 4b4t_L 174 EQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI-------------- 239 (437)
T ss_dssp ESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH--------------
T ss_pred cCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh--------------
Confidence 467889999999999999884433322 24789999999999999999999986
Q ss_pred CCCCCcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccc---cCceEEec
Q 006254 155 PTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYID 231 (653)
Q Consensus 155 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~ID 231 (653)
+.+|+.+..+...+.++|.- ++.+ ..+|..| .+.|||||
T Consensus 240 ----------------------------~~~~~~v~~s~l~sk~~Ges--e~~i--------r~~F~~A~~~~P~IifiD 281 (437)
T 4b4t_L 240 ----------------------------GANFIFSPASGIVDKYIGES--ARII--------REMFAYAKEHEPCIIFMD 281 (437)
T ss_dssp ----------------------------TCEEEEEEGGGTCCSSSSHH--HHHH--------HHHHHHHHHSCSEEEEEE
T ss_pred ----------------------------CCCEEEEehhhhccccchHH--HHHH--------HHHHHHHHhcCCceeeee
Confidence 46788887777777777741 1111 1223322 46899999
Q ss_pred ccccCC--------------HHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHh--hhcccccc
Q 006254 232 EINLLD--------------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSA 295 (653)
Q Consensus 232 Ei~~l~--------------~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLld--Rf~~~v~l 295 (653)
||+.+- ..+++.||..|+.-. ...+++|||||| .+..|+++|++ ||+..|++
T Consensus 282 EiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~-----------~~~~vivI~ATN-rp~~LDpAllRpGRfD~~I~i 349 (437)
T 4b4t_L 282 EVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD-----------NLGQTKIIMATN-RPDTLDPALLRPGRLDRKVEI 349 (437)
T ss_dssp CCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS-----------CTTSSEEEEEES-STTSSCTTTTSTTSEEEEECC
T ss_pred cccccccccccCCCCcchHHHHHHHHHHHHhhccc-----------CCCCeEEEEecC-CchhhCHHHhCCCccceeeec
Confidence 999762 124567888887422 112578999999 78899999987 59999999
Q ss_pred cCCCCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 006254 296 DLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAA 375 (653)
Q Consensus 296 ~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~ll 375 (653)
+. |+.+.|.+|++.... .....-.++ ++.|+.. ....+.+..-.++
T Consensus 350 ~l-Pd~~~R~~Il~~~~~---------------------------~~~~~~d~d---l~~lA~~---t~G~sGADi~~l~ 395 (437)
T 4b4t_L 350 PL-PNEAGRLEIFKIHTA---------------------------KVKKTGEFD---FEAAVKM---SDGFNGADIRNCA 395 (437)
T ss_dssp CC-CCHHHHHHHHHHHHH---------------------------TSCBCSCCC---HHHHHHT---CCSCCHHHHHHHH
T ss_pred CC-cCHHHHHHHHHHHhc---------------------------CCCCCcccC---HHHHHHh---CCCCCHHHHHHHH
Confidence 95 599999999863211 111001121 3444433 3334566666778
Q ss_pred HHHHHHHHHcCCCCccHHHHHHHHHHHcCCC
Q 006254 376 RVAKCLAALEGREKVNVDDLKKAVELVILPR 406 (653)
Q Consensus 376 r~Ara~Aal~gr~~Vt~eDv~~A~~lvl~hR 406 (653)
+-|.-.|.-+++..|+.+|+..|+.-+...+
T Consensus 396 ~eA~~~air~~~~~i~~~d~~~Al~~v~~~~ 426 (437)
T 4b4t_L 396 TEAGFFAIRDDRDHINPDDLMKAVRKVAEVK 426 (437)
T ss_dssp HHHHHHHHHTTCSSBCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhcc
Confidence 8888888889999999999999998776543
No 18
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.79 E-value=4.2e-19 Score=184.75 Aligned_cols=242 Identities=17% Similarity=0.201 Sum_probs=155.3
Q ss_pred CceechHHHHHHHHHhccc--------------CCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCc
Q 006254 95 AAVVGQDAIKTALLLGAID--------------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDE 160 (653)
Q Consensus 95 ~~IvGq~~~k~aL~~~av~--------------p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~ 160 (653)
+.|+|++.++++|..++.. ....+|||+||||||||++|++++..+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~------------------- 75 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN------------------- 75 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT-------------------
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC-------------------
Confidence 4699999999999654432 2356899999999999999999999874
Q ss_pred ccccccccccccccccccccccCCCeEeCCCCCccc-ceeeec--chhhhhccCCccccccccccc-cCceEEecccccC
Q 006254 161 WEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTED-RLIGSV--DVEESVKTGTTVFQPGLLAEA-HRGVLYIDEINLL 236 (653)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~-~l~G~~--d~~~~~~~g~~~~~~Gll~~A-~~giL~IDEi~~l 236 (653)
.+|+.+......+ .++|.. ..-..++ ...+|.+..+ .++|||||||+.+
T Consensus 76 -----------------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~vl~iDEi~~l 128 (310)
T 1ofh_A 76 -----------------------APFIKVEATKFTEVGYVGKEVDSIIRDLT----DSAGGAIDAVEQNGIVFIDEIDKI 128 (310)
T ss_dssp -----------------------CCEEEEEGGGGSSCCSGGGSTTHHHHHHH----HTTTTCHHHHHHHCEEEEECGGGG
T ss_pred -----------------------CCEEEEcchhcccCCccCccHHHHHHHHH----HHhhHHHhhccCCCEEEEEChhhc
Confidence 2233322221111 222210 0000111 1124555554 4789999999999
Q ss_pred CHHH------------HHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecC---CCCcccHHHHhhhcccccccCCCCH
Q 006254 237 DEGI------------SNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP---EEGVVREHLLDRIAINLSADLPMTF 301 (653)
Q Consensus 237 ~~~~------------~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp---~eg~l~~aLldRf~~~v~l~~p~~~ 301 (653)
+... ++.|+.+++.+.+.. +.| ...+.++++|+++|. .+..++++|++||+..|.++ |++.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~-~~~--~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~-~~~~ 204 (310)
T 1ofh_A 129 CKKGEYSGADVSREGVQRDLLPLVEGSTVST-KHG--MVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELT-ALSA 204 (310)
T ss_dssp SCCSSCCSSHHHHHHHHHHHHHHHHCCEEEE-TTE--EEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECC-CCCH
T ss_pred CccccccccchhHHHHHHHHHHHhcCCeEec-ccc--cccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcC-CcCH
Confidence 8654 899999999876432 222 234457889999764 34679999999999878888 5688
Q ss_pred hhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcC----CCCcchHHHHHHH
Q 006254 302 EDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGG----CQGHRAELYAARV 377 (653)
Q Consensus 302 ~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~----i~s~R~~i~llr~ 377 (653)
+++.+|++.... .+...+ ..........+.++++++++|++++|..+ ..+.|....+++.
T Consensus 205 ~~~~~il~~~~~------~~~~~~----------~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~ 268 (310)
T 1ofh_A 205 ADFERILTEPHA------SLTEQY----------KALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMER 268 (310)
T ss_dssp HHHHHHHHSSTT------CHHHHH----------HHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHH
T ss_pred HHHHHHHHhhHH------HHHHHH----------HHHHHhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHH
Confidence 887777762110 000000 01111122235799999999999998731 1257888888877
Q ss_pred HHHHHHHcC-----CC-CccHHHHHHHHHHH
Q 006254 378 AKCLAALEG-----RE-KVNVDDLKKAVELV 402 (653)
Q Consensus 378 Ara~Aal~g-----r~-~Vt~eDv~~A~~lv 402 (653)
+-..+.+.. .. .|+.+||++++.-.
T Consensus 269 ~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~ 299 (310)
T 1ofh_A 269 LMDKISFSASDMNGQTVNIDAAYVADALGEV 299 (310)
T ss_dssp HSHHHHHHGGGCTTCEEEECHHHHHHHTCSS
T ss_pred HHHhhhcCCccccCCEEEEeeHHHHHHHHhh
Confidence 665444322 22 49999999988643
No 19
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.79 E-value=9.8e-19 Score=189.54 Aligned_cols=220 Identities=17% Similarity=0.175 Sum_probs=144.2
Q ss_pred cCCCCCCCCceechHHHHHHHHHhccc------------CCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCC
Q 006254 87 YGRQFFPLAAVVGQDAIKTALLLGAID------------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANAD 154 (653)
Q Consensus 87 ~~~~~~~f~~IvGq~~~k~aL~~~av~------------p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~ 154 (653)
.+.+++.|++|+|++.+++.|...+.. ....+|||+||||||||++|++|+..+
T Consensus 107 ~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~-------------- 172 (389)
T 3vfd_A 107 DNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES-------------- 172 (389)
T ss_dssp CCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT--------------
T ss_pred ccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh--------------
Confidence 345678899999999999998554421 224789999999999999999999976
Q ss_pred CCCCCcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCcccccccccc---ccCceEEec
Q 006254 155 PTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAE---AHRGVLYID 231 (653)
Q Consensus 155 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~---A~~giL~ID 231 (653)
+.+|+.+.+......++|... .....++.. ..++|||||
T Consensus 173 ----------------------------~~~~~~v~~~~l~~~~~g~~~----------~~~~~~~~~a~~~~~~il~iD 214 (389)
T 3vfd_A 173 ----------------------------NATFFNISAASLTSKYVGEGE----------KLVRALFAVARELQPSIIFID 214 (389)
T ss_dssp ----------------------------TCEEEEECSCCC-------CH----------HHHHHHHHHHHHSSSEEEEEE
T ss_pred ----------------------------cCcEEEeeHHHhhccccchHH----------HHHHHHHHHHHhcCCeEEEEE
Confidence 356777776655555555321 011122322 245899999
Q ss_pred ccccC-----------CHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCC
Q 006254 232 EINLL-----------DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMT 300 (653)
Q Consensus 232 Ei~~l-----------~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~ 300 (653)
||+.| ...+++.|+..++... ...+.+++||+||| ....++++|++||...+.+.. ++
T Consensus 215 Eid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~~~v~vI~atn-~~~~l~~~l~~R~~~~i~i~~-p~ 283 (389)
T 3vfd_A 215 QVDSLLCERREGEHDASRRLKTEFLIEFDGVQ---------SAGDDRVLVMGATN-RPQELDEAVLRRFIKRVYVSL-PN 283 (389)
T ss_dssp TGGGGC--------CTHHHHHHHHHHHHHHHC--------------CEEEEEEES-CGGGCCHHHHTTCCEEEECCC-CC
T ss_pred CchhhcccCCCccchHHHHHHHHHHHHhhccc---------ccCCCCEEEEEecC-CchhcCHHHHcCcceEEEcCC-cC
Confidence 99988 4567788888887322 12234789999999 567889999999998888884 58
Q ss_pred HhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Q 006254 301 FEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKC 380 (653)
Q Consensus 301 ~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara 380 (653)
.++|.+|+..... ...+.++++.++.|+..+... +.+....+++.|..
T Consensus 284 ~~~r~~il~~~~~-----------------------------~~~~~l~~~~~~~la~~~~g~---~~~~l~~L~~~a~~ 331 (389)
T 3vfd_A 284 EETRLLLLKNLLC-----------------------------KQGSPLTQKELAQLARMTDGY---SGSDLTALAKDAAL 331 (389)
T ss_dssp HHHHHHHHHHHHT-----------------------------TSCCCSCHHHHHHHHHHTTTC---CHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH-----------------------------hcCCCCCHHHHHHHHHHcCCC---CHHHHHHHHHHHHH
Confidence 8888888753211 013457777777666654322 33344445544443
Q ss_pred HHHHc------------CCCCccHHHHHHHHHH
Q 006254 381 LAALE------------GREKVNVDDLKKAVEL 401 (653)
Q Consensus 381 ~Aal~------------gr~~Vt~eDv~~A~~l 401 (653)
.+.-+ +...|+.+|+..++.-
T Consensus 332 ~~~rel~~~~~~~~~~~~~~~i~~~d~~~al~~ 364 (389)
T 3vfd_A 332 GPIRELKPEQVKNMSASEMRNIRLSDFTESLKK 364 (389)
T ss_dssp HHHHTSCCC---CCSSSCCCCCCHHHHHHHHHH
T ss_pred HHHHhhhhhhhhccchhhcCCcCHHHHHHHHHH
Confidence 33322 4457999999998874
No 20
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.79 E-value=3.2e-19 Score=192.33 Aligned_cols=248 Identities=20% Similarity=0.219 Sum_probs=146.5
Q ss_pred ceechHHHHHHHHHhcc------------------------------cCCCceEEEECCCCCHHHHHHHHHHhhCCCCee
Q 006254 96 AVVGQDAIKTALLLGAI------------------------------DREIGGIAISGRRGTAKTVMARGLHAILPPIEV 145 (653)
Q Consensus 96 ~IvGq~~~k~aL~~~av------------------------------~p~~~gVLL~GppGTGKT~lArala~~l~~~~~ 145 (653)
.|+||+.+|++|..++. .+...+|||+||||||||++|++|+..+.
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~---- 97 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLD---- 97 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTT----
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhC----
Confidence 58999999999965441 12356899999999999999999999874
Q ss_pred eccccccCCCCCCCcccccccccccccccccccccccCCCeEeCCCCC-cccceeeecchhhhhccCCcccccccccccc
Q 006254 146 VVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGV-TEDRLIGSVDVEESVKTGTTVFQPGLLAEAH 224 (653)
Q Consensus 146 v~~~~~nc~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~-~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~ 224 (653)
.+|+.+.... +...++|. +.+. ...+......|.+..++
T Consensus 98 --------------------------------------~~~~~~~~~~~~~~~~~g~-~~~~-~~~~~~~~~~~~~~~~~ 137 (376)
T 1um8_A 98 --------------------------------------IPIAISDATSLTEAGYVGE-DVEN-ILTRLLQASDWNVQKAQ 137 (376)
T ss_dssp --------------------------------------CCEEEEEGGGCC---------CTH-HHHHHHHHTTTCHHHHT
T ss_pred --------------------------------------CCEEEecchhhhhcCcCCc-cHHH-HHHHHHhhccchhhhcC
Confidence 2333332221 11234443 1111 11111122345667778
Q ss_pred CceEEecccccCCHH--------------HHHHHHHHHHcCceEEeeCCeeEEeec--------CcEEEEEecCC-----
Q 006254 225 RGVLYIDEINLLDEG--------------ISNLLLNVLTEGVNIVEREGISFKHPC--------KPLLIATYNPE----- 277 (653)
Q Consensus 225 ~giL~IDEi~~l~~~--------------~~~~Ll~~l~~g~~~v~r~G~s~~~p~--------~~~lIattNp~----- 277 (653)
+||||||||+.++.. +++.|+.+|+.+.+.+.+.|.....+. ++++|+++|..
T Consensus 138 ~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~ 217 (376)
T 1um8_A 138 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEI 217 (376)
T ss_dssp TSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHH
T ss_pred CeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHH
Confidence 999999999999888 999999999988766777666554443 45666666621
Q ss_pred -----------------------------------CCcccHHHHhhhcccccccCCCCHhhHHHHHHHHH-HHHhhhhHH
Q 006254 278 -----------------------------------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIAT-QFQERSNEV 321 (653)
Q Consensus 278 -----------------------------------eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~-~~~~~~~~~ 321 (653)
...++++|++||+.++.+. |.+.++..+|+.... .+..
T Consensus 218 l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~-~l~~~~l~~i~~~~~~~~~~----- 291 (376)
T 1um8_A 218 IKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLD-SISLEAMVDILQKPKNALIK----- 291 (376)
T ss_dssp TTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECC-CCCHHHHHHHHHSSTTCHHH-----
T ss_pred HHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHhcCCCceeecc-CCCHHHHHHHHhhhHHHHHH-----
Confidence 1247899999998887777 667766666653100 0100
Q ss_pred hhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcC------CCCccHHHH
Q 006254 322 FKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEG------REKVNVDDL 395 (653)
Q Consensus 322 ~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~g------r~~Vt~eDv 395 (653)
++ ..........+.++++++++|+++++..+. +.|....++..+-..+..+. ...|+.++|
T Consensus 292 --~~----------~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~-~~R~L~~~le~~~~~~~~~~~~~~~~~~~i~~~~v 358 (376)
T 1um8_A 292 --QY----------QQLFKMDEVDLIFEEEAIKEIAQLALERKT-GARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCV 358 (376)
T ss_dssp --HH----------HHHHHTTTCEEEECHHHHHHHHHHHHHTTC-TGGGHHHHHHHHHHHHHHTGGGGTTSEEEECHHHH
T ss_pred --HH----------HHHHhhcCceEEECHHHHHHHHHHhccccc-CcHHHHHHHHHHHHHHHhhccCCCCCEEEEeHHHh
Confidence 00 001111123467999999999999987333 46887777766655544422 226999999
Q ss_pred HHHHHHHcCCC
Q 006254 396 KKAVELVILPR 406 (653)
Q Consensus 396 ~~A~~lvl~hR 406 (653)
..+.+-++..+
T Consensus 359 ~~~~~~~~~~~ 369 (376)
T 1um8_A 359 LKQAEPLIIAK 369 (376)
T ss_dssp TTSSCCEEEC-
T ss_pred cCCCCceeecc
Confidence 87665444433
No 21
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.78 E-value=2.8e-19 Score=184.69 Aligned_cols=223 Identities=19% Similarity=0.227 Sum_probs=150.9
Q ss_pred CCCCCCCCceechHHHHHHHHHhccc-------------CCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCC
Q 006254 88 GRQFFPLAAVVGQDAIKTALLLGAID-------------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANAD 154 (653)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~~~av~-------------p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~ 154 (653)
..+.+.|++|+|++.+++.|...+.. ....+|||+||||||||++|++++..+.
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~------------- 76 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETN------------- 76 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTT-------------
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhC-------------
Confidence 34578899999999999988544322 2457899999999999999999999874
Q ss_pred CCCCCcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccc---cccCceEEec
Q 006254 155 PTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLA---EAHRGVLYID 231 (653)
Q Consensus 155 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~---~A~~giL~ID 231 (653)
.+|+.+........+.|... . ....++. ...++|||||
T Consensus 77 -----------------------------~~~~~v~~~~~~~~~~~~~~--~--------~~~~~~~~~~~~~~~vl~iD 117 (285)
T 3h4m_A 77 -----------------------------ATFIRVVGSELVKKFIGEGA--S--------LVKDIFKLAKEKAPSIIFID 117 (285)
T ss_dssp -----------------------------CEEEEEEGGGGCCCSTTHHH--H--------HHHHHHHHHHHTCSEEEEEE
T ss_pred -----------------------------CCEEEEehHHHHHhccchHH--H--------HHHHHHHHHHHcCCeEEEEE
Confidence 34444433322223333210 0 0011222 2235799999
Q ss_pred ccccC-----------CHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHh--hhcccccccCC
Q 006254 232 EINLL-----------DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLP 298 (653)
Q Consensus 232 Ei~~l-----------~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLld--Rf~~~v~l~~p 298 (653)
||+.+ +...+..|+..++... +. ....++++|+||| ....+++++++ ||+..+.+. +
T Consensus 118 Eid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~------~~--~~~~~~~vI~ttn-~~~~l~~~l~~~~Rf~~~i~~~-~ 187 (285)
T 3h4m_A 118 EIDAIAAKRTDALTGGDREVQRTLMQLLAEMD------GF--DARGDVKIIGATN-RPDILDPAILRPGRFDRIIEVP-A 187 (285)
T ss_dssp TTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHH------TT--CSSSSEEEEEECS-CGGGBCHHHHSTTSEEEEEECC-C
T ss_pred CHHHhcccCccccCCccHHHHHHHHHHHHHhh------CC--CCCCCEEEEEeCC-CchhcCHHHcCCCcCCeEEEEC-C
Confidence 99987 5566677776665421 00 0123688999999 56778999998 999988998 5
Q ss_pred CCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCC-CHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 006254 299 MTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAI-GREQLKYLVMEALRGGCQGHRAELYAARV 377 (653)
Q Consensus 299 ~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~i-s~~~l~~l~~~~~~~~i~s~R~~i~llr~ 377 (653)
++.++|.+|++.... ...+ .+..++.++..+ ...+.|....+++.
T Consensus 188 p~~~~r~~il~~~~~-------------------------------~~~~~~~~~~~~l~~~~---~g~~~~~i~~l~~~ 233 (285)
T 3h4m_A 188 PDEKGRLEILKIHTR-------------------------------KMNLAEDVNLEEIAKMT---EGCVGAELKAICTE 233 (285)
T ss_dssp CCHHHHHHHHHHHHT-------------------------------TSCBCTTCCHHHHHHHC---TTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh-------------------------------cCCCCCcCCHHHHHHHc---CCCCHHHHHHHHHH
Confidence 688888888763211 0111 111234444333 33367788889999
Q ss_pred HHHHHHHcCCCCccHHHHHHHHHHHcCCC
Q 006254 378 AKCLAALEGREKVNVDDLKKAVELVILPR 406 (653)
Q Consensus 378 Ara~Aal~gr~~Vt~eDv~~A~~lvl~hR 406 (653)
|...|...++..|+.+|+.+|+..++..+
T Consensus 234 a~~~a~~~~~~~I~~~d~~~al~~~~~~~ 262 (285)
T 3h4m_A 234 AGMNAIRELRDYVTMDDFRKAVEKIMEKK 262 (285)
T ss_dssp HHHHHHHTTCSSBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCcCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999887654
No 22
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.77 E-value=4.5e-18 Score=181.95 Aligned_cols=145 Identities=23% Similarity=0.255 Sum_probs=107.3
Q ss_pred CceEEecccccCCHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecC-CCCcccHHHHhhhcccccccCCCCHhh
Q 006254 225 RGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP-EEGVVREHLLDRIAINLSADLPMTFED 303 (653)
Q Consensus 225 ~giL~IDEi~~l~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp-~eg~l~~aLldRf~~~v~l~~p~~~~~ 303 (653)
++|||||||+.++.+.++.|+..+++....+- -......+.+|++++. ....++++|++||.. +.+. |++.++
T Consensus 190 ~~vl~IDEi~~l~~~~~~~L~~~le~~~~~~~----ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~-i~~~-~~~~~e 263 (368)
T 3uk6_A 190 PGVLFIDEVHMLDIESFSFLNRALESDMAPVL----IMATNRGITRIRGTSYQSPHGIPIDLLDRLLI-VSTT-PYSEKD 263 (368)
T ss_dssp BCEEEEESGGGSBHHHHHHHHHHTTCTTCCEE----EEEESCSEEECBTSSCEEETTCCHHHHTTEEE-EEEC-CCCHHH
T ss_pred CceEEEhhccccChHHHHHHHHHhhCcCCCee----eeecccceeeeeccCCCCcccCCHHHHhhccE-EEec-CCCHHH
Confidence 47999999999999999999999987642110 0000001222222221 246788999999988 4887 668888
Q ss_pred HHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHH
Q 006254 304 RVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAA 383 (653)
Q Consensus 304 r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aa 383 (653)
+.+|+..... ...+.++++++++|+++++.+ +.|..+.+++.|...|.
T Consensus 264 ~~~il~~~~~-----------------------------~~~~~~~~~~l~~l~~~~~~G---~~r~~~~ll~~a~~~A~ 311 (368)
T 3uk6_A 264 TKQILRIRCE-----------------------------EEDVEMSEDAYTVLTRIGLET---SLRYAIQLITAASLVCR 311 (368)
T ss_dssp HHHHHHHHHH-----------------------------HTTCCBCHHHHHHHHHHHHHS---CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----------------------------HcCCCCCHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHH
Confidence 7777653211 124679999999999999864 57999999999999999
Q ss_pred HcCCCCccHHHHHHHHHHHcCCCc
Q 006254 384 LEGREKVNVDDLKKAVELVILPRS 407 (653)
Q Consensus 384 l~gr~~Vt~eDv~~A~~lvl~hR~ 407 (653)
..++..|+.+||++|+...+.++.
T Consensus 312 ~~~~~~It~~~v~~a~~~~~~~~~ 335 (368)
T 3uk6_A 312 KRKGTEVQVDDIKRVYSLFLDESR 335 (368)
T ss_dssp HTTCSSBCHHHHHHHHHHSBCHHH
T ss_pred HhCCCCCCHHHHHHHHHHhcCHHH
Confidence 999999999999999998776543
No 23
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.77 E-value=2.9e-19 Score=191.79 Aligned_cols=240 Identities=19% Similarity=0.220 Sum_probs=147.5
Q ss_pred ceechHHHHHHHHHhcc---------------cCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCc
Q 006254 96 AVVGQDAIKTALLLGAI---------------DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDE 160 (653)
Q Consensus 96 ~IvGq~~~k~aL~~~av---------------~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~ 160 (653)
.|+||+.+++.+..++. .....+|||+||||||||++|++||..+.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~------------------- 76 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD------------------- 76 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT-------------------
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC-------------------
Confidence 47999999999865441 12457899999999999999999999873
Q ss_pred ccccccccccccccccccccccCCCeEeCCCCCc-ccceeeecchhhhhccCCccccccccccccCceEEecccccCCHH
Q 006254 161 WEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVT-EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEG 239 (653)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~-~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~ 239 (653)
.+|+.+.+... ...++|.- . .....+.....++.+..+++||||||||+.++..
T Consensus 77 -----------------------~~~~~~~~~~l~~~~~~g~~-~-~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~ 131 (363)
T 3hws_A 77 -----------------------VPFTMADATTLTEAGYVGED-V-ENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRK 131 (363)
T ss_dssp -----------------------CCEEEEEHHHHTTCHHHHHH-H-THHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCC
T ss_pred -----------------------CCEEEechHHhccccccccc-H-HHHHHHHHHHhhhhHHhcCCcEEEEeChhhhccc
Confidence 45665543322 23355531 1 1111112223356667778999999999999876
Q ss_pred --------------HHHHHHHHHHcCceEEeeCCeeEE--------eecCcEEEEEecCCC---------Cc--------
Q 006254 240 --------------ISNLLLNVLTEGVNIVEREGISFK--------HPCKPLLIATYNPEE---------GV-------- 280 (653)
Q Consensus 240 --------------~~~~Ll~~l~~g~~~v~r~G~s~~--------~p~~~~lIattNp~e---------g~-------- 280 (653)
+++.||.+|+.....+...|.... ...+.++|+++|... +.
T Consensus 132 ~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~ 211 (363)
T 3hws_A 132 SDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGA 211 (363)
T ss_dssp SSCC---CHHHHHHHHHHHHHHHHCC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------
T ss_pred ccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccc
Confidence 999999999943333333233222 223455666665420 11
Q ss_pred ---------------------------ccHHHHhhhcccccccCCCCHhhHHHHHHHH-HHHHhhhhHHhhhhhhhhhHH
Q 006254 281 ---------------------------VREHLLDRIAINLSADLPMTFEDRVAAVGIA-TQFQERSNEVFKMVEEETDLA 332 (653)
Q Consensus 281 ---------------------------l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~-~~~~~~~~~~~~~~~~~~~~l 332 (653)
|+++|++||+.++.+. |++.+++.+|+... ..+.
T Consensus 212 ~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~-pl~~~~~~~I~~~~~~~l~----------------- 273 (363)
T 3hws_A 212 TVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLN-ELSEEALIQILKEPKNALT----------------- 273 (363)
T ss_dssp ------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECC-CCCHHHHHHHHHSSTTCHH-----------------
T ss_pred cccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecC-CCCHHHHHHHHHHHHHHHH-----------------
Confidence 7999999999997666 78999988887741 0010
Q ss_pred HHHHH-HHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcC--C-C----CccHHHHHHHH
Q 006254 333 KTQII-LAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEG--R-E----KVNVDDLKKAV 399 (653)
Q Consensus 333 ~~~i~-~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~g--r-~----~Vt~eDv~~A~ 399 (653)
.++. ........+.++++++++|+++++..+. +.|...++++.+-..+..+- . . .|+.++|++..
T Consensus 274 -~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~-gaR~L~~~ie~~~~~~l~~~~~~~~~~~~~I~~~~v~~~~ 346 (363)
T 3hws_A 274 -KQYQALFNLEGVDLEFRDEALDAIAKKAMARKT-GARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQS 346 (363)
T ss_dssp -HHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTC-TTTTHHHHHHHHHHHHHHSTTTCCCSEEEECHHHHTTCCS
T ss_pred -HHHHHHHHhcCceEEECHHHHHHHHHhhcCCcc-CchHHHHHHHHHHHHHHHhcccccCCceeEEcHHHHhCcC
Confidence 0011 1111223467999999999987766544 56777777665544443332 2 1 47777775544
No 24
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.76 E-value=3.8e-18 Score=173.93 Aligned_cols=218 Identities=18% Similarity=0.185 Sum_probs=147.0
Q ss_pred CCCCCCCceechHHHHHHHHHh---cccC---------CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCC
Q 006254 89 RQFFPLAAVVGQDAIKTALLLG---AIDR---------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT 156 (653)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~~~---av~p---------~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~ 156 (653)
.+...|++|+|++.+++.|... +..| ...+|||+||||||||++|++|+..+.
T Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~--------------- 70 (257)
T 1lv7_A 6 QIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK--------------- 70 (257)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT---------------
T ss_pred CCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC---------------
Confidence 4578899999999999988321 1111 246799999999999999999999763
Q ss_pred CCCcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccc---cCceEEeccc
Q 006254 157 CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEI 233 (653)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~IDEi 233 (653)
.+|+.+......+.++|.. .. ....++..+ ..++||||||
T Consensus 71 ---------------------------~~~~~i~~~~~~~~~~~~~---------~~-~~~~~~~~a~~~~~~il~iDei 113 (257)
T 1lv7_A 71 ---------------------------VPFFTISGSDFVEMFVGVG---------AS-RVRDMFEQAKKAAPCIIFIDEI 113 (257)
T ss_dssp ---------------------------CCEEEECSCSSTTSCCCCC---------HH-HHHHHHHHHHTTCSEEEEETTH
T ss_pred ---------------------------CCEEEEeHHHHHHHhhhhh---------HH-HHHHHHHHHHHcCCeeehhhhh
Confidence 3555555544444444421 10 011233333 2469999999
Q ss_pred ccCCH--------------HHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHh--hhcccccccC
Q 006254 234 NLLDE--------------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADL 297 (653)
Q Consensus 234 ~~l~~--------------~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLld--Rf~~~v~l~~ 297 (653)
+.+.. ..++.++..++.-. .+.++++|+|||. +..+++++++ ||+..+.+..
T Consensus 114 d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----------~~~~~~vI~~tn~-~~~l~~~l~r~~rf~~~i~i~~ 181 (257)
T 1lv7_A 114 DAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE-----------GNEGIIVIAATNR-PDVLDPALLRPGRFDRQVVVGL 181 (257)
T ss_dssp HHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC-----------SSSCEEEEEEESC-TTTSCGGGGSTTSSCEEEECCC
T ss_pred hhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc-----------cCCCEEEEEeeCC-chhCCHHHcCCCcCCeEEEeCC
Confidence 87643 45677777776421 1235789999994 5678888887 9999888885
Q ss_pred CCCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHH-HHHHHHHHHhcCCCCcchHHHHHH
Q 006254 298 PMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQ-LKYLVMEALRGGCQGHRAELYAAR 376 (653)
Q Consensus 298 p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~-l~~l~~~~~~~~i~s~R~~i~llr 376 (653)
++.++|.+|++... . ...+.++. +..++ ......+.|....+++
T Consensus 182 -P~~~~r~~il~~~~---~----------------------------~~~l~~~~~~~~la---~~~~G~~~~dl~~l~~ 226 (257)
T 1lv7_A 182 -PDVRGREQILKVHM---R----------------------------RVPLAPDIDAAIIA---RGTPGFSGADLANLVN 226 (257)
T ss_dssp -CCHHHHHHHHHHHH---T----------------------------TSCBCTTCCHHHHH---HTCTTCCHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHH---h----------------------------cCCCCccccHHHHH---HHcCCCCHHHHHHHHH
Confidence 57888888765321 0 11122222 22332 2222236788888999
Q ss_pred HHHHHHHHcCCCCccHHHHHHHHHHHcCC
Q 006254 377 VAKCLAALEGREKVNVDDLKKAVELVILP 405 (653)
Q Consensus 377 ~Ara~Aal~gr~~Vt~eDv~~A~~lvl~h 405 (653)
.|...|...++..|+.+|+.+|+..++.+
T Consensus 227 ~a~~~a~~~~~~~i~~~~~~~a~~~~~~~ 255 (257)
T 1lv7_A 227 EAALFAARGNKRVVSMVEFEKAKDKIMMG 255 (257)
T ss_dssp HHHHHHHHTTCSSBCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCcccHHHHHHHHHHHhcC
Confidence 99999999999999999999999987653
No 25
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.76 E-value=5.4e-18 Score=187.62 Aligned_cols=132 Identities=23% Similarity=0.297 Sum_probs=107.7
Q ss_pred ceEEecccccCCHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecC------------CCCcccHHHHhhhcccc
Q 006254 226 GVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP------------EEGVVREHLLDRIAINL 293 (653)
Q Consensus 226 giL~IDEi~~l~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp------------~eg~l~~aLldRf~~~v 293 (653)
+|+||||++.|+.+.++.|+..|++.. ..+++++| |+ .+..+.+.+++||..+
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~-------------~~~~il~t-n~~~~~i~~~~~~~~~~~l~~~i~sR~~~~- 361 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSI-------------APIVIFAS-NRGNCVIRGTEDITSPHGIPLDLLDRVMII- 361 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTT-------------CCEEEEEE-CCSEEECBTTSSCEEETTCCHHHHTTEEEE-
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccC-------------CCEEEEec-CCccccccccccccccccCChhHHhhccee-
Confidence 799999999999999999999999764 23334454 43 2567899999999986
Q ss_pred cccCCCCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHH
Q 006254 294 SADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELY 373 (653)
Q Consensus 294 ~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~ 373 (653)
.+. |++.++..+++...... ..+.++++++.+++.++..+ +.|.++.
T Consensus 362 ~~~-~~~~~e~~~iL~~~~~~-----------------------------~~~~~~~~~~~~i~~~a~~g---~~r~a~~ 408 (456)
T 2c9o_A 362 RTM-LYTPQEMKQIIKIRAQT-----------------------------EGINISEEALNHLGEIGTKT---TLRYSVQ 408 (456)
T ss_dssp ECC-CCCHHHHHHHHHHHHHH-----------------------------HTCCBCHHHHHHHHHHHHHS---CHHHHHH
T ss_pred eCC-CCCHHHHHHHHHHHHHH-----------------------------hCCCCCHHHHHHHHHHccCC---CHHHHHH
Confidence 776 78888888887643211 13679999999999988543 6899999
Q ss_pred HHHHHHHHHHHcCCCCccHHHHHHHHHHHcCC
Q 006254 374 AARVAKCLAALEGREKVNVDDLKKAVELVILP 405 (653)
Q Consensus 374 llr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~h 405 (653)
+++.|..+|.++|+..|+.+||.+|+.+++-.
T Consensus 409 ll~~a~~~A~~~~~~~v~~~~v~~~~~~~~d~ 440 (456)
T 2c9o_A 409 LLTPANLLAKINGKDSIEKEHVEEISELFYDA 440 (456)
T ss_dssp THHHHHHHHHHTTCSSBCHHHHHHHHHHSCCH
T ss_pred HHHHHHHHHhhcCCCccCHHHHHHHHHHhcCh
Confidence 99999999999999999999999999988753
No 26
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.76 E-value=3e-18 Score=179.90 Aligned_cols=220 Identities=20% Similarity=0.167 Sum_probs=155.3
Q ss_pred CCCCCCCCceechHHHHHHHHHhcc-----cCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccc
Q 006254 88 GRQFFPLAAVVGQDAIKTALLLGAI-----DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWE 162 (653)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~~~av-----~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~ 162 (653)
+.++..|++++|++..+..+...+. .....+|||+||+|||||++|++++..+.
T Consensus 5 ~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~--------------------- 63 (324)
T 1hqc_A 5 ALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG--------------------- 63 (324)
T ss_dssp CCCCCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHT---------------------
T ss_pred ccCcccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhC---------------------
Confidence 3467789999999998887733221 12457899999999999999999999764
Q ss_pred ccccccccccccccccccccCCCeEeCCCCCc--ccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHH
Q 006254 163 DGLDEKAEYDTAGNLKTQIARSPFVQIPLGVT--EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGI 240 (653)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~--~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~ 240 (653)
.+|+.+..... ...+++.+ . + ..+++++||||||+.++...
T Consensus 64 ---------------------~~~~~~~~~~~~~~~~l~~~l------~-~---------~~~~~~~l~lDEi~~l~~~~ 106 (324)
T 1hqc_A 64 ---------------------VNLRVTSGPAIEKPGDLAAIL------A-N---------SLEEGDILFIDEIHRLSRQA 106 (324)
T ss_dssp ---------------------CCEEEECTTTCCSHHHHHHHH------T-T---------TCCTTCEEEETTTTSCCHHH
T ss_pred ---------------------CCEEEEeccccCChHHHHHHH------H-H---------hccCCCEEEEECCcccccch
Confidence 23333322221 11222211 0 0 12568999999999999999
Q ss_pred HHHHHHHHHcCceEEeeCCee------E-EeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHH
Q 006254 241 SNLLLNVLTEGVNIVEREGIS------F-KHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQ 313 (653)
Q Consensus 241 ~~~Ll~~l~~g~~~v~r~G~s------~-~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~ 313 (653)
++.|+.+++++.+.+ .|.. . ..+.++++|++|| ..+.++++|++||+..+.+. +++.+++.+++....
T Consensus 107 ~~~L~~~l~~~~~~~--v~~~~~~~~~~~~~~~~~~~i~~t~-~~~~~~~~l~~R~~~~i~l~-~~~~~e~~~~l~~~~- 181 (324)
T 1hqc_A 107 EEHLYPAMEDFVMDI--VIGQGPAARTIRLELPRFTLIGATT-RPGLITAPLLSRFGIVEHLE-YYTPEELAQGVMRDA- 181 (324)
T ss_dssp HHHHHHHHHHSEEEE--CCSSSSSCCCEEEECCCCEEEEEES-CCSSCSCSTTTTCSCEEECC-CCCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhhhhHH--hccccccccccccCCCCEEEEEeCC-CcccCCHHHHhcccEEEecC-CCCHHHHHHHHHHHH-
Confidence 999999999987432 2211 1 1224689999999 55788999999998777888 456666555543210
Q ss_pred HHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHH
Q 006254 314 FQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVD 393 (653)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~e 393 (653)
. ...+.+++++++.++.++ .+ ..|....+++.+...|...+...|+.+
T Consensus 182 --------------------------~--~~~~~~~~~~~~~l~~~~-~G---~~r~l~~~l~~~~~~a~~~~~~~i~~~ 229 (324)
T 1hqc_A 182 --------------------------R--LLGVRITEEAALEIGRRS-RG---TMRVAKRLFRRVRDFAQVAGEEVITRE 229 (324)
T ss_dssp --------------------------H--TTTCCCCHHHHHHHHHHS-CS---CHHHHHHHHHHHTTTSTTTSCSCCCHH
T ss_pred --------------------------H--hcCCCCCHHHHHHHHHHc-cC---CHHHHHHHHHHHHHHHHHhcCCCCCHH
Confidence 0 113579999999998875 22 468888888888777877788899999
Q ss_pred HHHHHHHHH
Q 006254 394 DLKKAVELV 402 (653)
Q Consensus 394 Dv~~A~~lv 402 (653)
|+..+....
T Consensus 230 ~~~~~~~~~ 238 (324)
T 1hqc_A 230 RALEALAAL 238 (324)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999888653
No 27
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.76 E-value=7.3e-19 Score=185.74 Aligned_cols=159 Identities=21% Similarity=0.252 Sum_probs=113.3
Q ss_pred CCCCCCCCceechHHHHHHHHHhcccC------------CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCC
Q 006254 88 GRQFFPLAAVVGQDAIKTALLLGAIDR------------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADP 155 (653)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~~~av~p------------~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p 155 (653)
+.+++.|++|+|++.+|+.|...+..| ...+|||+||||||||++|+++++.+.
T Consensus 11 ~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~-------------- 76 (322)
T 3eie_A 11 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN-------------- 76 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHT--------------
T ss_pred cCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHC--------------
Confidence 456788999999999999996544211 235799999999999999999999763
Q ss_pred CCCCcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCcccccccccc---ccCceEEecc
Q 006254 156 TCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAE---AHRGVLYIDE 232 (653)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~---A~~giL~IDE 232 (653)
.+|+.+........++|.. ++.+ ..++.. ..++||||||
T Consensus 77 ----------------------------~~~~~v~~~~l~~~~~g~~--~~~~--------~~~f~~a~~~~~~vl~iDE 118 (322)
T 3eie_A 77 ----------------------------STFFSVSSSDLVSKWMGES--EKLV--------KQLFAMARENKPSIIFIDQ 118 (322)
T ss_dssp ----------------------------CEEEEEEHHHHHTTTGGGH--HHHH--------HHHHHHHHHTSSEEEEEEC
T ss_pred ----------------------------CCEEEEchHHHhhcccchH--HHHH--------HHHHHHHHhcCCeEEEech
Confidence 4566554433333444421 1111 112222 2458999999
Q ss_pred cccCCH-----------HHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCH
Q 006254 233 INLLDE-----------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTF 301 (653)
Q Consensus 233 i~~l~~-----------~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~ 301 (653)
|+.+.. .+++.|+..++.-.. ...+++||+||| .+..|+++|++||+..+.+.. ++.
T Consensus 119 id~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~----------~~~~v~vi~atn-~~~~ld~al~~Rf~~~i~~~~-p~~ 186 (322)
T 3eie_A 119 VDALTGTRGEGESEASRRIKTELLVQMNGVGN----------DSQGVLVLGATN-IPWQLDSAIRRRFERRIYIPL-PDL 186 (322)
T ss_dssp GGGGSCC------CCTHHHHHHHHHHHGGGGT----------SCCCEEEEEEES-CGGGSCHHHHHHCCEEEECCC-CCH
T ss_pred hhhhhccCCCCcchHHHHHHHHHHHHhccccc----------cCCceEEEEecC-ChhhCCHHHHcccCeEEEeCC-CCH
Confidence 998854 567888888874320 123578999999 677899999999999989984 588
Q ss_pred hhHHHHHHH
Q 006254 302 EDRVAAVGI 310 (653)
Q Consensus 302 ~~r~~I~~~ 310 (653)
++|.+|++.
T Consensus 187 ~~r~~il~~ 195 (322)
T 3eie_A 187 AARTTMFEI 195 (322)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888763
No 28
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.76 E-value=3.6e-18 Score=183.04 Aligned_cols=200 Identities=18% Similarity=0.182 Sum_probs=130.5
Q ss_pred CCCCCCCCceechHHHHHHHHHhcccC------------CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCC
Q 006254 88 GRQFFPLAAVVGQDAIKTALLLGAIDR------------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADP 155 (653)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~~~av~p------------~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p 155 (653)
+.++..|++|+|++.+++.|..++..| ...+|||+||||||||++|++|+..+.
T Consensus 44 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-------------- 109 (355)
T 2qp9_X 44 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN-------------- 109 (355)
T ss_dssp ---CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHT--------------
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC--------------
Confidence 456788999999999999996544321 235799999999999999999999873
Q ss_pred CCCCcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccc---cCceEEecc
Q 006254 156 TCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDE 232 (653)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~IDE 232 (653)
.+|+.+........++|.. ++ ....++..+ .++||||||
T Consensus 110 ----------------------------~~~~~v~~~~l~~~~~g~~--~~--------~~~~~f~~a~~~~~~vl~iDE 151 (355)
T 2qp9_X 110 ----------------------------STFFSVSSSDLVSKWMGES--EK--------LVKQLFAMARENKPSIIFIDQ 151 (355)
T ss_dssp ----------------------------CEEEEEEHHHHHSCC---C--HH--------HHHHHHHHHHHTSSEEEEEEC
T ss_pred ----------------------------CCEEEeeHHHHhhhhcchH--HH--------HHHHHHHHHHHcCCeEEEEec
Confidence 3455544332223344421 01 111233333 568999999
Q ss_pred cccCCH-----------HHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCH
Q 006254 233 INLLDE-----------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTF 301 (653)
Q Consensus 233 i~~l~~-----------~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~ 301 (653)
|+.+.. .+++.|+..|+.-.. .+.+++||+||| .+..++++|++||+..+.+.. ++.
T Consensus 152 id~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~----------~~~~v~vI~atn-~~~~ld~al~rRf~~~i~i~~-P~~ 219 (355)
T 2qp9_X 152 VDALTGTRGEGESEASRRIKTELLVQMNGVGN----------DSQGVLVLGATN-IPWQLDSAIRRRFERRIYIPL-PDL 219 (355)
T ss_dssp GGGGTC------CTHHHHHHHHHHHHHHHCC-------------CCEEEEEEES-CGGGSCHHHHHTCCEEEECCC-CCH
T ss_pred hHhhcccCCCCcchHHHHHHHHHHHHhhcccc----------cCCCeEEEeecC-CcccCCHHHHcccCEEEEeCC-cCH
Confidence 999863 467888888874320 123688999999 667899999999999989984 588
Q ss_pred hhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH
Q 006254 302 EDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCL 381 (653)
Q Consensus 302 ~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~ 381 (653)
++|.+|++.... .....+++..++.|+..+.. .+.|....+++.|...
T Consensus 220 ~~r~~il~~~l~-----------------------------~~~~~~~~~~l~~la~~t~G---~sg~dl~~l~~~A~~~ 267 (355)
T 2qp9_X 220 AARTTMFEINVG-----------------------------DTPSVLTKEDYRTLGAMTEG---YSGSDIAVVVKDALMQ 267 (355)
T ss_dssp HHHHHHHHHHHT-----------------------------TSCBCCCHHHHHHHHHHTTT---CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-----------------------------hCCCCCCHHHHHHHHHHcCC---CCHHHHHHHHHHHHHH
Confidence 888888763211 01134677777777766532 2455555666555544
Q ss_pred HH
Q 006254 382 AA 383 (653)
Q Consensus 382 Aa 383 (653)
|.
T Consensus 268 a~ 269 (355)
T 2qp9_X 268 PI 269 (355)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 29
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.75 E-value=2e-18 Score=175.55 Aligned_cols=220 Identities=19% Similarity=0.161 Sum_probs=131.4
Q ss_pred CCCCCceechHHHHHHHHHh---ccc---------CCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCC
Q 006254 91 FFPLAAVVGQDAIKTALLLG---AID---------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCP 158 (653)
Q Consensus 91 ~~~f~~IvGq~~~k~aL~~~---av~---------p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~ 158 (653)
...|++|+|++.+|+.|... ... +...+|||+||||||||++|+++++.+.
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~----------------- 64 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQ----------------- 64 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHT-----------------
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhC-----------------
Confidence 46799999999999888321 111 2346799999999999999999999763
Q ss_pred CcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccc---cCceEEeccccc
Q 006254 159 DEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEINL 235 (653)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~IDEi~~ 235 (653)
.+|+.+......+.+.|.. .. ...+++..+ .++|||||||+.
T Consensus 65 -------------------------~~~~~~~~~~~~~~~~~~~--~~--------~~~~~~~~a~~~~~~vl~iDeid~ 109 (262)
T 2qz4_A 65 -------------------------VPFLAMAGAEFVEVIGGLG--AA--------RVRSLFKEARARAPCIVYIDEIDA 109 (262)
T ss_dssp -------------------------CCEEEEETTTTSSSSTTHH--HH--------HHHHHHHHHHHTCSEEEEEECC--
T ss_pred -------------------------CCEEEechHHHHhhccChh--HH--------HHHHHHHHHHhcCCeEEEEeCcch
Confidence 3455444433222222210 00 011233333 267999999999
Q ss_pred CC------------HH---HHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHh--hhcccccccCC
Q 006254 236 LD------------EG---ISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLP 298 (653)
Q Consensus 236 l~------------~~---~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLld--Rf~~~v~l~~p 298 (653)
+. .. .++.|+..++... .+.++++|+|+| ....+++++++ ||+..+.+..
T Consensus 110 l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~-----------~~~~~~vi~~tn-~~~~ld~~l~~~~R~~~~i~i~~- 176 (262)
T 2qz4_A 110 VGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMG-----------TTDHVIVLASTN-RADILDGALMRPGRLDRHVFIDL- 176 (262)
T ss_dssp -----------------CHHHHHHHHHHHTCC-----------TTCCEEEEEEES-CGGGGGSGGGSTTSCCEEEECCS-
T ss_pred hhccccccccCccchhHHHHHHHHHHHhhCcC-----------CCCCEEEEecCC-ChhhcCHHHhcCCcCCeEEEeCC-
Confidence 83 22 3344555554311 123678999999 56678889998 9999989885
Q ss_pred CCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHH-HHHHHHHHHhcCCCCcchHHHHHHH
Q 006254 299 MTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQ-LKYLVMEALRGGCQGHRAELYAARV 377 (653)
Q Consensus 299 ~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~-l~~l~~~~~~~~i~s~R~~i~llr~ 377 (653)
++.++|.+|++..... . .+..+.+. ...++. .....+.|....+++.
T Consensus 177 p~~~~r~~il~~~~~~---------------------------~--~~~~~~~~~~~~l~~---~~~g~~~~~l~~l~~~ 224 (262)
T 2qz4_A 177 PTLQERREIFEQHLKS---------------------------L--KLTQSSTFYSQRLAE---LTPGFSGADIANICNE 224 (262)
T ss_dssp CCHHHHHHHHHHHHHH---------------------------T--TCCBTHHHHHHHHHH---TCTTCCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHh---------------------------C--CCCcchhhHHHHHHH---HCCCCCHHHHHHHHHH
Confidence 5888888887643211 0 11223222 233333 2333345666677888
Q ss_pred HHHHHHHcCCCCccHHHHHHHHHHHcCCCc
Q 006254 378 AKCLAALEGREKVNVDDLKKAVELVILPRS 407 (653)
Q Consensus 378 Ara~Aal~gr~~Vt~eDv~~A~~lvl~hR~ 407 (653)
|...|...++..|+.+|+..|+.-+...+.
T Consensus 225 a~~~a~~~~~~~i~~~d~~~a~~~~~~~~~ 254 (262)
T 2qz4_A 225 AALHAAREGHTSVHTLNFEYAVERVLAGTA 254 (262)
T ss_dssp HHTC--------CCBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHhccChh
Confidence 887888888899999999999998876543
No 30
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.74 E-value=2.7e-18 Score=189.35 Aligned_cols=218 Identities=17% Similarity=0.232 Sum_probs=144.9
Q ss_pred cCCCCCCCCceechHHHH---HHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccc
Q 006254 87 YGRQFFPLAAVVGQDAIK---TALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWED 163 (653)
Q Consensus 87 ~~~~~~~f~~IvGq~~~k---~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~ 163 (653)
.+.++..|++|+||++++ ..|...+......+|||+||||||||++|++|++.+.
T Consensus 18 ~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~---------------------- 75 (447)
T 3pvs_A 18 ARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN---------------------- 75 (447)
T ss_dssp HHTCCCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT----------------------
T ss_pred HHhCCCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC----------------------
Confidence 345678899999999998 5564434333457899999999999999999999874
Q ss_pred cccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHH
Q 006254 164 GLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNL 243 (653)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~ 243 (653)
.+|+.+.... .|.-++...+. ... .....+.++|||||||+.++...++.
T Consensus 76 --------------------~~f~~l~a~~-----~~~~~ir~~~~-~a~----~~~~~~~~~iLfIDEI~~l~~~~q~~ 125 (447)
T 3pvs_A 76 --------------------ADVERISAVT-----SGVKEIREAIE-RAR----QNRNAGRRTILFVDEVHRFNKSQQDA 125 (447)
T ss_dssp --------------------CEEEEEETTT-----CCHHHHHHHHH-HHH----HHHHTTCCEEEEEETTTCC------C
T ss_pred --------------------CCeEEEEecc-----CCHHHHHHHHH-HHH----HhhhcCCCcEEEEeChhhhCHHHHHH
Confidence 3444443321 11111111111 100 01113457899999999999999999
Q ss_pred HHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCC-CcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHh
Q 006254 244 LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE-GVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVF 322 (653)
Q Consensus 244 Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e-g~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~ 322 (653)
|+..++++. +++|++|+... ..+.++|++||.++ .+. |++.++..+++.....-.
T Consensus 126 LL~~le~~~---------------v~lI~att~n~~~~l~~aL~sR~~v~-~l~-~l~~edi~~il~~~l~~~------- 181 (447)
T 3pvs_A 126 FLPHIEDGT---------------ITFIGATTENPSFELNSALLSRARVY-LLK-SLSTEDIEQVLTQAMEDK------- 181 (447)
T ss_dssp CHHHHHTTS---------------CEEEEEESSCGGGSSCHHHHTTEEEE-ECC-CCCHHHHHHHHHHHHHCT-------
T ss_pred HHHHHhcCc---------------eEEEecCCCCcccccCHHHhCceeEE-eeC-CcCHHHHHHHHHHHHHHH-------
Confidence 999999875 56777776443 57899999999865 676 567777666665332110
Q ss_pred hhhhhhhhHHHHHHHHHHhh-hcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHc--CCCCccHHHHHHHH
Q 006254 323 KMVEEETDLAKTQIILAREY-LKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALE--GREKVNVDDLKKAV 399 (653)
Q Consensus 323 ~~~~~~~~~l~~~i~~ar~~-l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~--gr~~Vt~eDv~~A~ 399 (653)
.+.. ...+.+++++++.|+++ +.+ ..|..+++++.+...+... |...||.+||.+++
T Consensus 182 ----------------~~~~~~~~~~i~~~al~~L~~~-~~G---d~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l 241 (447)
T 3pvs_A 182 ----------------TRGYGGQDIVLPDETRRAIAEL-VNG---DARRALNTLEMMADMAEVDDSGKRVLKPELLTEIA 241 (447)
T ss_dssp ----------------TTSSTTSSEECCHHHHHHHHHH-HCS---CHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHH
T ss_pred ----------------hhhhccccCcCCHHHHHHHHHH-CCC---CHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHH
Confidence 0000 13467999999999998 333 4799999998877666544 55689999999987
Q ss_pred H
Q 006254 400 E 400 (653)
Q Consensus 400 ~ 400 (653)
.
T Consensus 242 ~ 242 (447)
T 3pvs_A 242 G 242 (447)
T ss_dssp T
T ss_pred h
Confidence 5
No 31
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.74 E-value=2.4e-17 Score=171.34 Aligned_cols=222 Identities=18% Similarity=0.188 Sum_probs=140.8
Q ss_pred CCCCCCCCceechHHHHHHHHHhccc------------CCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCC
Q 006254 88 GRQFFPLAAVVGQDAIKTALLLGAID------------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADP 155 (653)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~~~av~------------p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p 155 (653)
+.++..|++|+|++.+++.|...+.. ....+|||+||||||||++|++++..+.
T Consensus 14 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~-------------- 79 (297)
T 3b9p_A 14 GGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECS-------------- 79 (297)
T ss_dssp CSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTT--------------
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhC--------------
Confidence 34678899999999999998544322 2357899999999999999999999773
Q ss_pred CCCCcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEeccccc
Q 006254 156 TCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINL 235 (653)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~ 235 (653)
.+|+.+........+.|.. +... ...-.......++||||||++.
T Consensus 80 ----------------------------~~~~~i~~~~l~~~~~~~~--~~~~-----~~~~~~~~~~~~~vl~iDEid~ 124 (297)
T 3b9p_A 80 ----------------------------ATFLNISAASLTSKYVGDG--EKLV-----RALFAVARHMQPSIIFIDEVDS 124 (297)
T ss_dssp ----------------------------CEEEEEESTTTSSSSCSCH--HHHH-----HHHHHHHHHTCSEEEEEETGGG
T ss_pred ----------------------------CCeEEeeHHHHhhcccchH--HHHH-----HHHHHHHHHcCCcEEEeccHHH
Confidence 3455444433333333321 0000 0000111223568999999988
Q ss_pred CC-----------HHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhH
Q 006254 236 LD-----------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDR 304 (653)
Q Consensus 236 l~-----------~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r 304 (653)
+. ..+++.|+..++..... . ...++++|++|| .+..+++++++||...+.+.. ++.++|
T Consensus 125 l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~--~------~~~~v~vi~~tn-~~~~l~~~l~~R~~~~i~~~~-p~~~~r 194 (297)
T 3b9p_A 125 LLSERSSSEHEASRRLKTEFLVEFDGLPGN--P------DGDRIVVLAATN-RPQELDEAALRRFTKRVYVSL-PDEQTR 194 (297)
T ss_dssp TSBCC-----CCSHHHHHHHHHHHHHCC--------------CEEEEEEES-CGGGBCHHHHHHCCEEEECCC-CCHHHH
T ss_pred hccccccCcchHHHHHHHHHHHHHhccccc--C------CCCcEEEEeecC-ChhhCCHHHHhhCCeEEEeCC-cCHHHH
Confidence 73 45677888888754311 0 112578999999 667899999999998888885 578888
Q ss_pred HHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHH
Q 006254 305 VAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAAL 384 (653)
Q Consensus 305 ~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal 384 (653)
.+|+...... ....++++.++.++..+. |. +.+....+++.|...|.-
T Consensus 195 ~~il~~~~~~-----------------------------~~~~~~~~~~~~la~~~~--g~-~~~~l~~l~~~a~~~a~r 242 (297)
T 3b9p_A 195 ELLLNRLLQK-----------------------------QGSPLDTEALRRLAKITD--GY-SGSDLTALAKDAALEPIR 242 (297)
T ss_dssp HHHHHHHHGG-----------------------------GSCCSCHHHHHHHHHHTT--TC-CHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHh-----------------------------cCCCCCHHHHHHHHHHcC--CC-CHHHHHHHHHHHHHHHHH
Confidence 8876532110 123466676776666542 21 333333555555444432
Q ss_pred c------------CCCCccHHHHHHHHH
Q 006254 385 E------------GREKVNVDDLKKAVE 400 (653)
Q Consensus 385 ~------------gr~~Vt~eDv~~A~~ 400 (653)
+ ....|+.+|+..|+.
T Consensus 243 ~~~~~~~~~~~~~~~~~i~~~d~~~a~~ 270 (297)
T 3b9p_A 243 ELNVEQVKCLDISAMRAITEQDFHSSLK 270 (297)
T ss_dssp TCC--------CCCCCCCCHHHHHHHTT
T ss_pred HHhhhhcccccccccCCcCHHHHHHHHH
Confidence 2 235799999988875
No 32
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.74 E-value=1.9e-17 Score=175.00 Aligned_cols=160 Identities=23% Similarity=0.238 Sum_probs=113.3
Q ss_pred CCCCCCCCceechHHHHHHHHHhcccC------------CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCC
Q 006254 88 GRQFFPLAAVVGQDAIKTALLLGAIDR------------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADP 155 (653)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~~~av~p------------~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p 155 (653)
+.+...|++|+|++.+|+.|...+..| ...+|||+||||||||++|++++..+.
T Consensus 5 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-------------- 70 (322)
T 1xwi_A 5 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-------------- 70 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT--------------
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC--------------
Confidence 456788999999999999985443211 236899999999999999999999873
Q ss_pred CCCCcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccc---cccCceEEecc
Q 006254 156 TCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLA---EAHRGVLYIDE 232 (653)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~---~A~~giL~IDE 232 (653)
..+|+.+......+.++|.. ++.+ ..++. ....+||||||
T Consensus 71 ---------------------------~~~~~~i~~~~l~~~~~g~~--~~~~--------~~lf~~a~~~~~~vl~iDE 113 (322)
T 1xwi_A 71 ---------------------------NSTFFSISSSDLVSKWLGES--EKLV--------KNLFQLARENKPSIIFIDE 113 (322)
T ss_dssp ---------------------------SCEEEEEECCSSCCSSCCSC--HHHH--------HHHHHHHHHTSSEEEEEET
T ss_pred ---------------------------CCcEEEEEhHHHHhhhhhHH--HHHH--------HHHHHHHHhcCCcEEEeec
Confidence 24555555544444455531 1111 11222 23467999999
Q ss_pred cccCC-----------HHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCH
Q 006254 233 INLLD-----------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTF 301 (653)
Q Consensus 233 i~~l~-----------~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~ 301 (653)
|+.+. ..+++.|+..|+.-.. .+.+++||+||| .+..++++|++||+..+.++. ++.
T Consensus 114 id~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~----------~~~~v~vI~atn-~~~~ld~al~rRf~~~i~i~~-P~~ 181 (322)
T 1xwi_A 114 IDSLCGSRSENESEAARRIKTEFLVQMQGVGV----------DNDGILVLGATN-IPWVLDSAIRRRFEKRIYIPL-PEP 181 (322)
T ss_dssp TTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSS----------CCTTEEEEEEES-CTTTSCHHHHHTCCEEEECCC-CCH
T ss_pred HHHhccccccccchHHHHHHHHHHHHHhcccc----------cCCCEEEEEecC-CcccCCHHHHhhcCeEEEeCC-cCH
Confidence 99882 2467778888874320 123689999999 667899999999999989985 588
Q ss_pred hhHHHHHHH
Q 006254 302 EDRVAAVGI 310 (653)
Q Consensus 302 ~~r~~I~~~ 310 (653)
++|.+|++.
T Consensus 182 ~~r~~il~~ 190 (322)
T 1xwi_A 182 HARAAMFKL 190 (322)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888763
No 33
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.74 E-value=9.5e-20 Score=186.71 Aligned_cols=223 Identities=19% Similarity=0.221 Sum_probs=144.2
Q ss_pred CCCCCCCCceechHHHHHHHHHhcc---c---------CCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCC
Q 006254 88 GRQFFPLAAVVGQDAIKTALLLGAI---D---------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADP 155 (653)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~~~av---~---------p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p 155 (653)
+.+.+.|++|+|++.+++.|...+. . ....+|||+||||||||++|++|+..+.
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~-------------- 69 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAH-------------- 69 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHT--------------
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhC--------------
Confidence 3457889999999998888843211 1 2246799999999999999999999763
Q ss_pred CCCCcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccc---cCceEEecc
Q 006254 156 TCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDE 232 (653)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~IDE 232 (653)
.+|+.+......+.+.|. +. ....+++..+ ..+||||||
T Consensus 70 ----------------------------~~~~~v~~~~~~~~~~~~---------~~-~~~~~~~~~a~~~~~~vl~iDE 111 (268)
T 2r62_A 70 ----------------------------VPFFSMGGSSFIEMFVGL---------GA-SRVRDLFETAKKQAPSIIFIDE 111 (268)
T ss_dssp ----------------------------CCCCCCCSCTTTTSCSSS---------CS-SSSSTTHHHHHHSCSCEEEESC
T ss_pred ----------------------------CCEEEechHHHHHhhcch---------HH-HHHHHHHHHHHhcCCeEEEEeC
Confidence 234444433333333332 11 1112344444 248999999
Q ss_pred cccCCHH---------------HHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHh--hhcccccc
Q 006254 233 INLLDEG---------------ISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSA 295 (653)
Q Consensus 233 i~~l~~~---------------~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLld--Rf~~~v~l 295 (653)
++.+... .++.|+..++.-. ....++++|+|+| .+..+++++++ ||+..+.+
T Consensus 112 id~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~----------~~~~~v~vi~ttn-~~~~ld~~l~r~~Rf~~~i~i 180 (268)
T 2r62_A 112 IDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFG----------SENAPVIVLAATN-RPEILDPALMRPGRFDRQVLV 180 (268)
T ss_dssp GGGTTC----------CCCSCSSTTTTTTTTTCSS----------CSCSCCEEEECBS-CCTTSCGGGGSSSSSCCCCBC
T ss_pred hhhhcccccccccCCCchhHHHHHHHHHHHhhCcc----------cCCCCEEEEEecC-CchhcCHhHcCCCCCCeEEEe
Confidence 9998654 3445555554211 0123588999999 45668889998 99999899
Q ss_pred cCCCCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCC-HHHHHHHHHHHHhcCCCCcchHHHH
Q 006254 296 DLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIG-REQLKYLVMEALRGGCQGHRAELYA 374 (653)
Q Consensus 296 ~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is-~~~l~~l~~~~~~~~i~s~R~~i~l 374 (653)
.. ++.++|.+|++... . .+.+. +..++.++.. ....+.|....+
T Consensus 181 ~~-p~~~~r~~il~~~~---~----------------------------~~~~~~~~~~~~la~~---~~g~~g~dl~~l 225 (268)
T 2r62_A 181 DK-PDFNGRVEILKVHI---K----------------------------GVKLANDVNLQEVAKL---TAGLAGADLANI 225 (268)
T ss_dssp CC-CCTTTHHHHHHHHT---S----------------------------SSCCCSSCCTTTTTSS---SCSSCHHHHHHH
T ss_pred cC-cCHHHHHHHHHHHH---h----------------------------cCCCCCccCHHHHHHH---cCCCCHHHHHHH
Confidence 85 57788888875221 0 11111 1112233322 222244677778
Q ss_pred HHHHHHHHHHcCCCCccHHHHHHHHHHHcCCCcc
Q 006254 375 ARVAKCLAALEGREKVNVDDLKKAVELVILPRSI 408 (653)
Q Consensus 375 lr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~hR~~ 408 (653)
++.|..+|...+...|+.+|+.+|+..+.+++.+
T Consensus 226 ~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~~~~~ 259 (268)
T 2r62_A 226 INEAALLAGRNNQKEVRQQHLKEAVERGIAGLEK 259 (268)
T ss_dssp HHHHHHTTSSSCCCSCCHHHHHTSCTTCCCCCC-
T ss_pred HHHHHHHHHHhccCCcCHHHHHHHHHHHhhcchh
Confidence 8888888877888899999999999988888865
No 34
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.74 E-value=1.5e-17 Score=178.30 Aligned_cols=160 Identities=20% Similarity=0.205 Sum_probs=111.1
Q ss_pred CCCCCCCCceechHHHHHHHHHhcc------------cCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCC
Q 006254 88 GRQFFPLAAVVGQDAIKTALLLGAI------------DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADP 155 (653)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~~~av------------~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p 155 (653)
+.++..|++|+|++.+++.|...+. .....+|||+||||||||++|++|+..+.
T Consensus 77 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~-------------- 142 (357)
T 3d8b_A 77 HGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSG-------------- 142 (357)
T ss_dssp CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTT--------------
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcC--------------
Confidence 4567889999999999999854432 23457899999999999999999999763
Q ss_pred CCCCcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccc---cccCceEEecc
Q 006254 156 TCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLA---EAHRGVLYIDE 232 (653)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~---~A~~giL~IDE 232 (653)
.+|+.+........++|.. +.. ...++. ...++||||||
T Consensus 143 ----------------------------~~~~~i~~~~l~~~~~g~~--~~~--------~~~~~~~a~~~~~~vl~iDE 184 (357)
T 3d8b_A 143 ----------------------------ATFFSISASSLTSKWVGEG--EKM--------VRALFAVARCQQPAVIFIDE 184 (357)
T ss_dssp ----------------------------CEEEEEEGGGGCCSSTTHH--HHH--------HHHHHHHHHHTCSEEEEEET
T ss_pred ----------------------------CeEEEEehHHhhccccchH--HHH--------HHHHHHHHHhcCCeEEEEeC
Confidence 3455554443333333321 000 111222 23468999999
Q ss_pred cccCC-----------HHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCH
Q 006254 233 INLLD-----------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTF 301 (653)
Q Consensus 233 i~~l~-----------~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~ 301 (653)
|+.+. ..+++.|+..++... ...+.+++||+||| ....++++|++||...+.+.. ++.
T Consensus 185 id~l~~~~~~~~~~~~~~~~~~lL~~l~~~~---------~~~~~~v~vI~atn-~~~~l~~~l~~Rf~~~i~i~~-p~~ 253 (357)
T 3d8b_A 185 IDSLLSQRGDGEHESSRRIKTEFLVQLDGAT---------TSSEDRILVVGATN-RPQEIDEAARRRLVKRLYIPL-PEA 253 (357)
T ss_dssp HHHHTBC------CHHHHHHHHHHHHHHC-------------CCCCEEEEEEES-CGGGBCHHHHTTCCEEEECCC-CCH
T ss_pred chhhhccCCCCcchHHHHHHHHHHHHHhccc---------ccCCCCEEEEEecC-ChhhCCHHHHhhCceEEEeCC-cCH
Confidence 98873 256778888887432 11234689999999 567889999999998888885 578
Q ss_pred hhHHHHHHH
Q 006254 302 EDRVAAVGI 310 (653)
Q Consensus 302 ~~r~~I~~~ 310 (653)
++|.+|+..
T Consensus 254 ~~r~~il~~ 262 (357)
T 3d8b_A 254 SARKQIVIN 262 (357)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888764
No 35
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.73 E-value=7.8e-18 Score=175.75 Aligned_cols=213 Identities=18% Similarity=0.176 Sum_probs=147.2
Q ss_pred ceechHHHHHHHHHhc--c-------------cCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCc
Q 006254 96 AVVGQDAIKTALLLGA--I-------------DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDE 160 (653)
Q Consensus 96 ~IvGq~~~k~aL~~~a--v-------------~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~ 160 (653)
+|+|++.+|+.|...+ + .+...+|||+||||||||++|+++++.+....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~---------------- 95 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLG---------------- 95 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTT----------------
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcC----------------
Confidence 6999999999884211 1 23456799999999999999999999874100
Q ss_pred ccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccC----
Q 006254 161 WEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLL---- 236 (653)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l---- 236 (653)
.....+|+.+........++|.. .....+++..++++||||||++.+
T Consensus 96 -------------------~~~~~~~~~~~~~~l~~~~~g~~----------~~~~~~~~~~~~~~vl~iDEid~l~~~~ 146 (309)
T 3syl_A 96 -------------------YVRKGHLVSVTRDDLVGQYIGHT----------APKTKEVLKRAMGGVLFIDEAYYLYRPD 146 (309)
T ss_dssp -------------------SSSSCCEEEECGGGTCCSSTTCH----------HHHHHHHHHHHTTSEEEEETGGGSCCCC
T ss_pred -------------------CcCCCcEEEEcHHHhhhhccccc----------HHHHHHHHHhcCCCEEEEEChhhhccCC
Confidence 01245677776655555566632 112245677778899999999987
Q ss_pred -----CHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCC----cccHHHHhhhcccccccCCCCHhhHHHH
Q 006254 237 -----DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG----VVREHLLDRIAINLSADLPMTFEDRVAA 307 (653)
Q Consensus 237 -----~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg----~l~~aLldRf~~~v~l~~p~~~~~r~~I 307 (653)
+...++.|+..|+++. .++++|+++|+... .++++|++||+..|.+. |++.+++.+|
T Consensus 147 ~~~~~~~~~~~~Ll~~l~~~~-------------~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~-~~~~~~~~~i 212 (309)
T 3syl_A 147 NERDYGQEAIEILLQVMENNR-------------DDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFP-DYSDEELFEI 212 (309)
T ss_dssp ---CCTHHHHHHHHHHHHHCT-------------TTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEEC-CCCHHHHHHH
T ss_pred CcccccHHHHHHHHHHHhcCC-------------CCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcC-CcCHHHHHHH
Confidence 8899999999999763 36789999986432 24689999999988998 5688888877
Q ss_pred HHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHh----cCCCCcchHHHHHHHHHHHHH
Q 006254 308 VGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALR----GGCQGHRAELYAARVAKCLAA 383 (653)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~----~~i~s~R~~i~llr~Ara~Aa 383 (653)
+.....- ..+.+++++++.+++++.. ......|....+++.|...+.
T Consensus 213 l~~~l~~-----------------------------~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~~ 263 (309)
T 3syl_A 213 AGHMLDD-----------------------------QNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARLRQA 263 (309)
T ss_dssp HHHHHHH-----------------------------TTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-----------------------------cCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHH
Confidence 6532110 1357899999999887542 112236877777776665443
Q ss_pred Hc----CCCCccHHHHH
Q 006254 384 LE----GREKVNVDDLK 396 (653)
Q Consensus 384 l~----gr~~Vt~eDv~ 396 (653)
.. +...++.+|+.
T Consensus 264 ~r~~~~~~~~~~~~~l~ 280 (309)
T 3syl_A 264 NRLFTASSGPLDARALS 280 (309)
T ss_dssp HHHHHC---CEEHHHHH
T ss_pred HHHHhccCCCCCHHHHh
Confidence 22 44677777765
No 36
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.73 E-value=1.2e-17 Score=174.40 Aligned_cols=214 Identities=21% Similarity=0.231 Sum_probs=135.2
Q ss_pred CceechHHHHHHHHHhccc-------C--CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccc
Q 006254 95 AAVVGQDAIKTALLLGAID-------R--EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL 165 (653)
Q Consensus 95 ~~IvGq~~~k~aL~~~av~-------p--~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~ 165 (653)
..|+|++.+++.+...+.. | ..++|||+||||||||++|++|+..+..-
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~---------------------- 74 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT---------------------- 74 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC----------------------
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC----------------------
Confidence 3689999998887433221 1 13579999999999999999999987421
Q ss_pred cccccccccccccccccCCCeEeCCCC-----CcccceeeecchhhhhccCCc--cccccccccccCceEEecccccCCH
Q 006254 166 DEKAEYDTAGNLKTQIARSPFVQIPLG-----VTEDRLIGSVDVEESVKTGTT--VFQPGLLAEAHRGVLYIDEINLLDE 238 (653)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~fv~l~~~-----~~~~~l~G~~d~~~~~~~g~~--~~~~Gll~~A~~giL~IDEi~~l~~ 238 (653)
..+|+.+.++ .....++|...- ..|.. ..-.+.+..+.++|||||||+.++.
T Consensus 75 -----------------~~~~~~~~~~~~~~~~~~~~l~g~~~~----~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~ 133 (311)
T 4fcw_A 75 -----------------EEAMIRIDMTEYMEKHAVSRLIGAPPG----YVGYEEGGQLTEAVRRRPYSVILFDAIEKAHP 133 (311)
T ss_dssp -----------------GGGEEEEEGGGCCSTTHHHHHHCCCTT----STTTTTCCHHHHHHHHCSSEEEEEETGGGSCH
T ss_pred -----------------CcceEEeecccccccccHHHhcCCCCc----cccccccchHHHHHHhCCCeEEEEeChhhcCH
Confidence 1223222211 122344443210 00100 0111233445678999999999999
Q ss_pred HHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCC-------------------------CCcccHHHHhhhcccc
Q 006254 239 GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE-------------------------EGVVREHLLDRIAINL 293 (653)
Q Consensus 239 ~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~-------------------------eg~l~~aLldRf~~~v 293 (653)
.+++.|+.+|+++.+.. ..|..... .++++|+|||.. .+.++++|++||+..+
T Consensus 134 ~~~~~Ll~~le~~~~~~-~~~~~~~~-~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~ 211 (311)
T 4fcw_A 134 DVFNILLQMLDDGRLTD-SHGRTVDF-RNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIV 211 (311)
T ss_dssp HHHHHHHHHHHHSEEEC-TTSCEEEC-TTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEE
T ss_pred HHHHHHHHHHhcCEEEc-CCCCEEEC-CCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEE
Confidence 99999999999997541 12322322 256799999972 4578899999998887
Q ss_pred cccCCCCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHH--hcCCCCcchH
Q 006254 294 SADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEAL--RGGCQGHRAE 371 (653)
Q Consensus 294 ~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~--~~~i~s~R~~ 371 (653)
.+. |++.+++.+|+... .... ...+ ......+.++++++++|++++| .+|+ |..
T Consensus 212 ~~~-p~~~~~~~~i~~~~---l~~~--------------~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~gn~---R~L 267 (311)
T 4fcw_A 212 VFR-PLTKEQIRQIVEIQ---MSYL--------------RARL---AEKRISLELTEAAKDFLAERGYDPVFGA---RPL 267 (311)
T ss_dssp ECC-CCCHHHHHHHHHHH---THHH--------------HHHH---HTTTCEEEECHHHHHHHHHHSCBTTTBT---TTH
T ss_pred EeC-CCCHHHHHHHHHHH---HHHH--------------HHHH---HhCCcEEEeCHHHHHHHHHhCCCccCCc---hhH
Confidence 776 67777776666532 1110 0011 1112246899999999999988 5554 555
Q ss_pred HHHHHH
Q 006254 372 LYAARV 377 (653)
Q Consensus 372 i~llr~ 377 (653)
..+++.
T Consensus 268 ~~~i~~ 273 (311)
T 4fcw_A 268 RRVIQR 273 (311)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 37
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.73 E-value=6.6e-18 Score=157.60 Aligned_cols=135 Identities=16% Similarity=0.121 Sum_probs=102.0
Q ss_pred ceechHHHHHHHH--HhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccccccc
Q 006254 96 AVVGQDAIKTALL--LGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDT 173 (653)
Q Consensus 96 ~IvGq~~~k~aL~--~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~~~ 173 (653)
+|+|++..++.+. +..+.....+|||+||||||||++|++||..+..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~------------------------------- 50 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRN------------------------------- 50 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTT-------------------------------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCc-------------------------------
Confidence 5789998877773 3334456789999999999999999999997752
Q ss_pred cccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHHHHHHcCce
Q 006254 174 AGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVN 253 (653)
Q Consensus 174 ~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~l~~g~~ 253 (653)
.+.+|+ +.+....+. ....|++..+++|+||||||+.++...|..|+.+|...
T Consensus 51 --------~~~~~v-~~~~~~~~~----------------~~~~~~~~~a~~g~l~ldei~~l~~~~q~~Ll~~l~~~-- 103 (145)
T 3n70_A 51 --------AQGEFV-YRELTPDNA----------------PQLNDFIALAQGGTLVLSHPEHLTREQQYHLVQLQSQE-- 103 (145)
T ss_dssp --------TTSCCE-EEECCTTTS----------------SCHHHHHHHHTTSCEEEECGGGSCHHHHHHHHHHHHSS--
T ss_pred --------cCCCEE-EECCCCCcc----------------hhhhcHHHHcCCcEEEEcChHHCCHHHHHHHHHHHhhc--
Confidence 245676 655433222 22356788889999999999999999999999999543
Q ss_pred EEeeCCeeEEeecCcEEEEEecCC------CCcccHHHHhhhcccccccCCCC
Q 006254 254 IVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMT 300 (653)
Q Consensus 254 ~v~r~G~s~~~p~~~~lIattNp~------eg~l~~aLldRf~~~v~l~~p~~ 300 (653)
+.++.+|+|||.. ++.++++|++||... .+..|+.
T Consensus 104 -----------~~~~~~I~~t~~~~~~~~~~~~~~~~L~~rl~~~-~i~lPpL 144 (145)
T 3n70_A 104 -----------HRPFRLIGIGDTSLVELAASNHIIAELYYCFAMT-QIACLPL 144 (145)
T ss_dssp -----------SCSSCEEEEESSCHHHHHHHSCCCHHHHHHHHHH-EEECCCC
T ss_pred -----------CCCEEEEEECCcCHHHHHHcCCCCHHHHHHhcCC-EEeCCCC
Confidence 3467899999964 467999999999865 5665654
No 38
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.71 E-value=9.2e-17 Score=177.15 Aligned_cols=160 Identities=21% Similarity=0.240 Sum_probs=109.4
Q ss_pred CCCCCCCCceechHHHHHHHHHhccc------------CCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCC
Q 006254 88 GRQFFPLAAVVGQDAIKTALLLGAID------------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADP 155 (653)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~~~av~------------p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p 155 (653)
+.+++.|++|+|++.+++.|...++. ....+|||+||||||||++|++|+..+.
T Consensus 127 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~-------------- 192 (444)
T 2zan_A 127 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-------------- 192 (444)
T ss_dssp CCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC--------------
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC--------------
Confidence 45678899999999999999654421 1246899999999999999999999873
Q ss_pred CCCCcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccc---cccCceEEecc
Q 006254 156 TCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLA---EAHRGVLYIDE 232 (653)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~---~A~~giL~IDE 232 (653)
..+|+.+......+.++|... + ....++. ...++||||||
T Consensus 193 ---------------------------~~~~~~v~~~~l~~~~~g~~~--~--------~~~~~f~~a~~~~~~vl~iDE 235 (444)
T 2zan_A 193 ---------------------------NSTFFSISSSDLVSKWLGESE--K--------LVKNLFQLARENKPSIIFIDE 235 (444)
T ss_dssp ---------------------------SSEEEEECCC---------CC--C--------THHHHHHHHHHSCSEEEEESC
T ss_pred ---------------------------CCCEEEEeHHHHHhhhcchHH--H--------HHHHHHHHHHHcCCeEEEEec
Confidence 345666655544445555310 0 0111222 23468999999
Q ss_pred cccCC-----------HHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCH
Q 006254 233 INLLD-----------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTF 301 (653)
Q Consensus 233 i~~l~-----------~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~ 301 (653)
|+.+. ..+++.|+..|+.-. ..+.+++||+||| .+..++++|++||+..+.++. ++.
T Consensus 236 id~l~~~~~~~~~~~~~~~~~~lL~~l~~~~----------~~~~~v~vI~atn-~~~~ld~al~rRf~~~i~i~~-P~~ 303 (444)
T 2zan_A 236 IDSLCGSRSENESEAARRIKTEFLVQMQGVG----------VDNDGILVLGATN-IPWVLDSAIRRRFEKRIYIPL-PEA 303 (444)
T ss_dssp TTTTCCCSSCCCCGGGHHHHHHHHTTTTCSS----------CCCSSCEEEEEES-CGGGSCHHHHTTCCEEEECCC-CCH
T ss_pred hHhhccCCCCccccHHHHHHHHHHHHHhCcc----------cCCCCEEEEecCC-CccccCHHHHhhcceEEEeCC-cCH
Confidence 99882 356677777665421 0134689999999 667899999999998889985 588
Q ss_pred hhHHHHHHH
Q 006254 302 EDRVAAVGI 310 (653)
Q Consensus 302 ~~r~~I~~~ 310 (653)
+.|.+|++.
T Consensus 304 ~~r~~il~~ 312 (444)
T 2zan_A 304 HARAAMFRL 312 (444)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888763
No 39
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.71 E-value=2.6e-17 Score=182.14 Aligned_cols=216 Identities=24% Similarity=0.270 Sum_probs=147.2
Q ss_pred CCCCCCceechHHHHHHHHHh---cccC---------CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCC
Q 006254 90 QFFPLAAVVGQDAIKTALLLG---AIDR---------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTC 157 (653)
Q Consensus 90 ~~~~f~~IvGq~~~k~aL~~~---av~p---------~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~ 157 (653)
..+.|++|+|++++|..|... .-+| ...||||+||||||||++|++|+..+
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~----------------- 73 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA----------------- 73 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH-----------------
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc-----------------
Confidence 457899999999999888321 1111 23679999999999999999999976
Q ss_pred CCcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccc---cCceEEecccc
Q 006254 158 PDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEIN 234 (653)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~IDEi~ 234 (653)
+.+|+.++.....+.++|. |.. ...++|..| .++|||||||+
T Consensus 74 -------------------------~~~f~~is~~~~~~~~~g~---------~~~-~~r~lf~~A~~~~p~ILfIDEid 118 (476)
T 2ce7_A 74 -------------------------NVPFFHISGSDFVELFVGV---------GAA-RVRDLFAQAKAHAPCIVFIDEID 118 (476)
T ss_dssp -------------------------TCCEEEEEGGGTTTCCTTH---------HHH-HHHHHHHHHHHTCSEEEEEETGG
T ss_pred -------------------------CCCeeeCCHHHHHHHHhcc---------cHH-HHHHHHHHHHhcCCCEEEEechh
Confidence 3566666544444444442 111 122445554 35699999999
Q ss_pred cCCH--------------HHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHh--hhcccccccCC
Q 006254 235 LLDE--------------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLP 298 (653)
Q Consensus 235 ~l~~--------------~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLld--Rf~~~v~l~~p 298 (653)
.+.. .+++.|+..|+.-. .+.+++||++|| .+..+++++++ ||+..|.+..
T Consensus 119 ~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~-----------~~~~viVIaaTn-~~~~Ld~allR~gRFd~~i~i~~- 185 (476)
T 2ce7_A 119 AVGRHRGAGLGGGHDEREQTLNQLLVEMDGFD-----------SKEGIIVMAATN-RPDILDPALLRPGRFDKKIVVDP- 185 (476)
T ss_dssp GTCCC---------CHHHHHHHHHHHHHHHSC-----------GGGTEEEEEEES-CGGGSCGGGGSTTSSCEEEECCC-
T ss_pred hhhhhcccccCcCcHHHHHHHHHHHHHHhccC-----------CCCCEEEEEecC-ChhhhchhhcccCcceeEeecCC-
Confidence 8743 36788888887311 123678999999 56678888886 9999989984
Q ss_pred CCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHH-HHHHHHHHHhcCCCCcchHHHHHHH
Q 006254 299 MTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQ-LKYLVMEALRGGCQGHRAELYAARV 377 (653)
Q Consensus 299 ~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~-l~~l~~~~~~~~i~s~R~~i~llr~ 377 (653)
++.++|.+|++.... ...+.+++ +..++. .....+.|....+++.
T Consensus 186 Pd~~~R~~Il~~~~~-------------------------------~~~l~~~v~l~~la~---~t~G~sgadL~~lv~~ 231 (476)
T 2ce7_A 186 PDMLGRKKILEIHTR-------------------------------NKPLAEDVNLEIIAK---RTPGFVGADLENLVNE 231 (476)
T ss_dssp CCHHHHHHHHHHHHT-------------------------------TSCBCTTCCHHHHHH---TCTTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH-------------------------------hCCCcchhhHHHHHH---hcCCCcHHHHHHHHHH
Confidence 588888888753210 01122111 334432 2222345677788888
Q ss_pred HHHHHHHcCCCCccHHHHHHHHHHHcC
Q 006254 378 AKCLAALEGREKVNVDDLKKAVELVIL 404 (653)
Q Consensus 378 Ara~Aal~gr~~Vt~eDv~~A~~lvl~ 404 (653)
|..+|...+...|+.+|+.+|+..++.
T Consensus 232 Aal~A~~~~~~~I~~~dl~~al~~v~~ 258 (476)
T 2ce7_A 232 AALLAAREGRDKITMKDFEEAIDRVIA 258 (476)
T ss_dssp HHHHHHHTTCSSBCHHHHHHHHHHHC-
T ss_pred HHHHHHHcCCCeecHHHHHHHHHHHhc
Confidence 888888888899999999999998874
No 40
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.71 E-value=4.6e-17 Score=191.03 Aligned_cols=203 Identities=19% Similarity=0.215 Sum_probs=134.7
Q ss_pred CceechHHHHHHHHHhcc-------cC--CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccc
Q 006254 95 AAVVGQDAIKTALLLGAI-------DR--EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL 165 (653)
Q Consensus 95 ~~IvGq~~~k~aL~~~av-------~p--~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~ 165 (653)
..|+||+.++..+..++. +| ..+++||+||||||||++|++||..+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~----------------------- 547 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFG----------------------- 547 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHS-----------------------
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC-----------------------
Confidence 568999998877732221 12 1236999999999999999999998731
Q ss_pred cccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHH
Q 006254 166 DEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLL 245 (653)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll 245 (653)
...+|+.+.++...+.+... .|. -.+.+..+.++|||||||+.+++++++.|+
T Consensus 548 ----------------~~~~~i~i~~s~~~~~~~~~--------~~~---l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll 600 (758)
T 3pxi_A 548 ----------------DEESMIRIDMSEYMEKHSTS--------GGQ---LTEKVRRKPYSVVLLDAIEKAHPDVFNILL 600 (758)
T ss_dssp ----------------CTTCEEEEEGGGGCSSCCCC--------------CHHHHHHCSSSEEEEECGGGSCHHHHHHHH
T ss_pred ----------------CCcceEEEechhcccccccc--------cch---hhHHHHhCCCeEEEEeCccccCHHHHHHHH
Confidence 24566666555433333321 011 012333456789999999999999999999
Q ss_pred HHHHcCceEEeeCCeeEEeecCcEEEEEecCCCC-----------cccHHHHhhhcccccccCCCCHhhHHHHHHHHHHH
Q 006254 246 NVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG-----------VVREHLLDRIAINLSADLPMTFEDRVAAVGIATQF 314 (653)
Q Consensus 246 ~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg-----------~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~ 314 (653)
++|++|.+ .+.++....+.++++|+|||.... .|+++|++||+..|.+. |++.+++.+|+......
T Consensus 601 ~~le~g~~--~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~-~l~~~~~~~i~~~~l~~ 677 (758)
T 3pxi_A 601 QVLEDGRL--TDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFH-SLEKKHLTEIVSLMSDQ 677 (758)
T ss_dssp HHHHHSBC--C-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC---CHHHHHHHHHHHHHH
T ss_pred HHhccCeE--EcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecC-CCCHHHHHHHHHHHHHH
Confidence 99999984 444555555678999999995332 28999999998887887 67888777777643322
Q ss_pred HhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHH--HHHhcCCCCcch
Q 006254 315 QERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVM--EALRGGCQGHRA 370 (653)
Q Consensus 315 ~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~--~~~~~~i~s~R~ 370 (653)
. ..+ .......+.++++++++|++ +.|.+|+..++.
T Consensus 678 ~-----------------~~~---~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~ 715 (758)
T 3pxi_A 678 L-----------------TKR---LKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRR 715 (758)
T ss_dssp H-----------------HHH---HHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHH
T ss_pred H-----------------HHH---HHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHH
Confidence 1 111 11113357899999999987 556666644443
No 41
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.69 E-value=2.3e-17 Score=172.69 Aligned_cols=158 Identities=17% Similarity=0.199 Sum_probs=112.5
Q ss_pred CCCCCCCCceechHHHHHHHHHhccc-------------CCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCC
Q 006254 88 GRQFFPLAAVVGQDAIKTALLLGAID-------------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANAD 154 (653)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~~~av~-------------p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~ 154 (653)
+.+.+.|++|+|++.+++.|...+.. +...+|||+||||||||++|++|+..+.
T Consensus 8 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~------------- 74 (301)
T 3cf0_A 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ------------- 74 (301)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT-------------
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC-------------
Confidence 34678899999999999988543322 2356899999999999999999999873
Q ss_pred CCCCCcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccc---cCceEEec
Q 006254 155 PTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYID 231 (653)
Q Consensus 155 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~ID 231 (653)
.+|+.+......+.++|.. .....+++..+ .++|||||
T Consensus 75 -----------------------------~~~i~v~~~~l~~~~~g~~----------~~~~~~~f~~a~~~~p~il~iD 115 (301)
T 3cf0_A 75 -----------------------------ANFISIKGPELLTMWFGES----------EANVREIFDKARQAAPCVLFFD 115 (301)
T ss_dssp -----------------------------CEEEEECHHHHHHHHHTTC----------TTHHHHHHHHHHHTCSEEEEEC
T ss_pred -----------------------------CCEEEEEhHHHHhhhcCch----------HHHHHHHHHHHHhcCCeEEEEE
Confidence 4555554333233344421 11112344444 35799999
Q ss_pred ccccCCH--------------HHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHh--hhcccccc
Q 006254 232 EINLLDE--------------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSA 295 (653)
Q Consensus 232 Ei~~l~~--------------~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLld--Rf~~~v~l 295 (653)
||+.+.. .+++.|+..|+.-. ...+++||+||| .+..+++++++ ||+..+.+
T Consensus 116 Eid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~-----------~~~~v~vi~atn-~~~~ld~al~r~gRf~~~i~i 183 (301)
T 3cf0_A 116 ELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS-----------TKKNVFIIGATN-RPDIIDPAILRPGRLDQLIYI 183 (301)
T ss_dssp STTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC-----------TTSSEEEEEEES-CGGGSCGGGGSTTSSCEEEEC
T ss_pred ChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc-----------CCCCEEEEEecC-CccccChHHhcCCccceEEec
Confidence 9998654 35788999887421 123689999999 66778899988 99999899
Q ss_pred cCCCCHhhHHHHHHH
Q 006254 296 DLPMTFEDRVAAVGI 310 (653)
Q Consensus 296 ~~p~~~~~r~~I~~~ 310 (653)
+. ++.++|.+|++.
T Consensus 184 ~~-p~~~~r~~il~~ 197 (301)
T 3cf0_A 184 PL-PDEKSRVAILKA 197 (301)
T ss_dssp CC-CCHHHHHHHHHH
T ss_pred CC-cCHHHHHHHHHH
Confidence 85 588888888764
No 42
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.69 E-value=2.7e-17 Score=183.23 Aligned_cols=156 Identities=18% Similarity=0.207 Sum_probs=114.9
Q ss_pred CCCCCCceechHHHHHHHHHhcc-------------cCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCC
Q 006254 90 QFFPLAAVVGQDAIKTALLLGAI-------------DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT 156 (653)
Q Consensus 90 ~~~~f~~IvGq~~~k~aL~~~av-------------~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~ 156 (653)
....|++|+|++..++.|...+. .+...+|||+||||||||++|++|+..+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~---------------- 262 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---------------- 262 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC----------------
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh----------------
Confidence 45689999999999998843322 2345789999999999999999999976
Q ss_pred CCCcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCcccccccccccc---CceEEeccc
Q 006254 157 CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAH---RGVLYIDEI 233 (653)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~---~giL~IDEi 233 (653)
+.+|+.+.+....+.++|... . ...++|..|. .+|||||||
T Consensus 263 --------------------------~~~fv~vn~~~l~~~~~g~~~--~--------~~~~~f~~A~~~~p~iLfLDEI 306 (489)
T 3hu3_A 263 --------------------------GAFFFLINGPEIMSKLAGESE--S--------NLRKAFEEAEKNAPAIIFIDEL 306 (489)
T ss_dssp --------------------------SSEEEEEEHHHHHTSCTTHHH--H--------HHHHHHHHHHHTCSEEEEEESH
T ss_pred --------------------------CCCEEEEEchHhhhhhcchhH--H--------HHHHHHHHHHhcCCcEEEecch
Confidence 356666665555555665321 1 1124454443 359999999
Q ss_pred ccCC-----------HHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHh--hhcccccccCCCC
Q 006254 234 NLLD-----------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPMT 300 (653)
Q Consensus 234 ~~l~-----------~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLld--Rf~~~v~l~~p~~ 300 (653)
+.+. ..+++.|+..|+... .+.+++||+||| .+..|+++|++ ||+..+.+.. ++
T Consensus 307 d~l~~~~~~~~~~~~~~~~~~LL~~ld~~~-----------~~~~v~vIaaTn-~~~~Ld~al~r~gRf~~~i~i~~-P~ 373 (489)
T 3hu3_A 307 DAIAPKREKTHGEVERRIVSQLLTLMDGLK-----------QRAHVIVMAATN-RPNSIDPALRRFGRFDREVDIGI-PD 373 (489)
T ss_dssp HHHCBCTTSCCCHHHHHHHHHHHHHHHHSC-----------TTSCEEEEEEES-CGGGBCGGGGSTTSSCEEEECCC-CC
T ss_pred hhhccccccccchHHHHHHHHHHHHhhccc-----------cCCceEEEEecC-CccccCHHHhCCCcCceEEEeCC-CC
Confidence 7664 378899999998542 134689999999 55678899988 9999889985 58
Q ss_pred HhhHHHHHHH
Q 006254 301 FEDRVAAVGI 310 (653)
Q Consensus 301 ~~~r~~I~~~ 310 (653)
.++|.+|++.
T Consensus 374 ~~eR~~IL~~ 383 (489)
T 3hu3_A 374 ATGRLEILQI 383 (489)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888888763
No 43
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.69 E-value=1e-17 Score=155.95 Aligned_cols=132 Identities=20% Similarity=0.259 Sum_probs=97.0
Q ss_pred ceechHHHHHHHHH--hcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccccccc
Q 006254 96 AVVGQDAIKTALLL--GAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDT 173 (653)
Q Consensus 96 ~IvGq~~~k~aL~~--~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~~~ 173 (653)
+++|++..++.+.. ..+.+...+|||+||||||||++|++||..+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~--------------------------------- 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG--------------------------------- 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT---------------------------------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC---------------------------------
Confidence 57899888777632 2333566889999999999999999999864
Q ss_pred cccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHHHHHHcCce
Q 006254 174 AGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVN 253 (653)
Q Consensus 174 ~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~l~~g~~ 253 (653)
. +|+.+++....+.+ ..|++..+++|+||||||+.++.+.++.|+.+++++.
T Consensus 52 ---------~-~~~~~~~~~~~~~~-----------------~~~~~~~a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~- 103 (143)
T 3co5_A 52 ---------T-PWVSPARVEYLIDM-----------------PMELLQKAEGGVLYVGDIAQYSRNIQTGITFIIGKAE- 103 (143)
T ss_dssp ---------S-CEECCSSTTHHHHC-----------------HHHHHHHTTTSEEEEEECTTCCHHHHHHHHHHHHHHT-
T ss_pred ---------C-CeEEechhhCChHh-----------------hhhHHHhCCCCeEEEeChHHCCHHHHHHHHHHHHhCC-
Confidence 2 56655554322221 3467788889999999999999999999999999763
Q ss_pred EEeeCCeeEEeecCcEEEEEecCCCCc----ccHHHHhhhcccccccCCCC
Q 006254 254 IVEREGISFKHPCKPLLIATYNPEEGV----VREHLLDRIAINLSADLPMT 300 (653)
Q Consensus 254 ~v~r~G~s~~~p~~~~lIattNp~eg~----l~~aLldRf~~~v~l~~p~~ 300 (653)
+.++++|+|||..... ++++|++||... .+..|+.
T Consensus 104 -----------~~~~~iI~~tn~~~~~~~~~~~~~L~~rl~~~-~i~lPpL 142 (143)
T 3co5_A 104 -----------RCRVRVIASCSYAAGSDGISCEEKLAGLFSES-VVRIPPL 142 (143)
T ss_dssp -----------TTTCEEEEEEEECTTTC--CHHHHHHHHSSSE-EEEECCC
T ss_pred -----------CCCEEEEEecCCCHHHHHhCccHHHHHHhcCc-EEeCCCC
Confidence 3468899999964322 889999998765 4554553
No 44
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.68 E-value=2.8e-16 Score=184.38 Aligned_cols=221 Identities=19% Similarity=0.160 Sum_probs=144.2
Q ss_pred CceechHHHHHHHHHhcc-------cC--CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccc
Q 006254 95 AAVVGQDAIKTALLLGAI-------DR--EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL 165 (653)
Q Consensus 95 ~~IvGq~~~k~aL~~~av-------~p--~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~ 165 (653)
..|+||+.++..+..++. +| ..+++||+||||||||++|++++..++. ....++|..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~----~~~~i~~s~---------- 523 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI----ELLRFDMSE---------- 523 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTC----EEEEEEGGG----------
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcC----CEEEEechh----------
Confidence 458999998877733221 11 2347999999999999999999998841 111233310
Q ss_pred cccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHH
Q 006254 166 DEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLL 245 (653)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll 245 (653)
+....+.++++|...-..+...+. ...+.+..++++|||||||+.+++++++.|+
T Consensus 524 -----------------------~~~~~~~~~l~g~~~g~~g~~~~~--~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll 578 (758)
T 1r6b_X 524 -----------------------YMERHTVSRLIGAPPGYVGFDQGG--LLTDAVIKHPHAVLLLDEIEKAHPDVFNILL 578 (758)
T ss_dssp -----------------------CSSSSCCSSSCCCCSCSHHHHHTT--HHHHHHHHCSSEEEEEETGGGSCHHHHHHHH
T ss_pred -----------------------hcchhhHhhhcCCCCCCcCccccc--hHHHHHHhCCCcEEEEeCccccCHHHHHHHH
Confidence 011122344555321000000011 1134455677899999999999999999999
Q ss_pred HHHHcCceEEeeCCeeEEeecCcEEEEEecCCC------------------------CcccHHHHhhhcccccccCCCCH
Q 006254 246 NVLTEGVNIVEREGISFKHPCKPLLIATYNPEE------------------------GVVREHLLDRIAINLSADLPMTF 301 (653)
Q Consensus 246 ~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e------------------------g~l~~aLldRf~~~v~l~~p~~~ 301 (653)
++|++|.++. ..|..+.+ .+++||+|||+.. +.++++|++||+.+|.++ |++.
T Consensus 579 ~~le~~~~~~-~~g~~~~~-~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~-~l~~ 655 (758)
T 1r6b_X 579 QVMDNGTLTD-NNGRKADF-RNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFD-HLST 655 (758)
T ss_dssp HHHHHSEEEE-TTTEEEEC-TTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECC-CCCH
T ss_pred HHhcCcEEEc-CCCCEEec-CCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeC-CCCH
Confidence 9999998653 34555544 5789999999732 268899999999888887 6777
Q ss_pred hhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 006254 302 EDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVA 378 (653)
Q Consensus 302 ~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~A 378 (653)
+++..|+.....- +..++. ...-.+.++++++++|++++|..+. +.|....+++.+
T Consensus 656 ~~~~~i~~~~l~~-----------------~~~~~~---~~~~~~~~~~~a~~~l~~~~~~~~~-g~R~l~~~i~~~ 711 (758)
T 1r6b_X 656 DVIHQVVDKFIVE-----------------LQVQLD---QKGVSLEVSQEARNWLAEKGYDRAM-GARPMARVIQDN 711 (758)
T ss_dssp HHHHHHHHHHHHH-----------------HHHHHH---HTTEEEEECHHHHHHHHHHHCBTTT-BTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----------------HHHHHH---HCCcEEEeCHHHHHHHHHhCCCcCC-CchHHHHHHHHH
Confidence 7777776633211 011111 1111367999999999999998775 678777776543
No 45
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.68 E-value=6.8e-17 Score=179.84 Aligned_cols=218 Identities=21% Similarity=0.231 Sum_probs=145.3
Q ss_pred CCCCCCceechHHHHHHHHHh---cccC---------CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCC
Q 006254 90 QFFPLAAVVGQDAIKTALLLG---AIDR---------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTC 157 (653)
Q Consensus 90 ~~~~f~~IvGq~~~k~aL~~~---av~p---------~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~ 157 (653)
+.+.|++|+|++++|..+.-. .-+| ...||||+||||||||++|++|+..+.
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~---------------- 89 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR---------------- 89 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT----------------
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC----------------
Confidence 578899999999999888321 1121 135799999999999999999999863
Q ss_pred CCcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCcccccccccccc---CceEEecccc
Q 006254 158 PDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAH---RGVLYIDEIN 234 (653)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~---~giL~IDEi~ 234 (653)
.+|+.+......+.++|.. .+ ....++..+. .+|+|||||+
T Consensus 90 --------------------------~~~i~i~g~~~~~~~~g~~--~~--------~v~~lfq~a~~~~p~il~IDEId 133 (499)
T 2dhr_A 90 --------------------------VPFITASGSDFVEMFVGVG--AA--------RVRDLFETAKRHAPCIVFIDEID 133 (499)
T ss_dssp --------------------------CCEEEEEGGGGTSSCTTHH--HH--------HHHHHTTTSSSSSSCEEEEECGG
T ss_pred --------------------------CCEEEEehhHHHHhhhhhH--HH--------HHHHHHHHHHhcCCCEEEEehHH
Confidence 3455554433223333321 00 0112333332 4799999998
Q ss_pred cCCH--------------HHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHh--hhcccccccCC
Q 006254 235 LLDE--------------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLP 298 (653)
Q Consensus 235 ~l~~--------------~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLld--Rf~~~v~l~~p 298 (653)
.+.. ..++.|+..|+.+. ....+++|+++| .+..|+++|++ ||+..|.++.
T Consensus 134 ~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~-----------~~~~viviAatn-~p~~LD~aLlr~gRfdr~i~i~~- 200 (499)
T 2dhr_A 134 AVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE-----------KDTAIVVMAATN-RPDILDPALLRPGRFDRQIAIDA- 200 (499)
T ss_dssp GTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC-----------SSCCCEEEECCS-CGGGSCTTTSSTTSSCCEEECCC-
T ss_pred HHHHhhccCcCCCcHHHHHHHHHHHHHhcccc-----------cCccEEEEEecC-ChhhcCcccccccccceEEecCC-
Confidence 7742 45677777776443 123578999999 55668999987 8999999985
Q ss_pred CCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHH-HHHHHHHHHhcCCCCcchHHHHHHH
Q 006254 299 MTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQ-LKYLVMEALRGGCQGHRAELYAARV 377 (653)
Q Consensus 299 ~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~-l~~l~~~~~~~~i~s~R~~i~llr~ 377 (653)
++.++|.+|++.. ...+.+++++ +..++. .....+.|....+++.
T Consensus 201 Pd~~~R~~IL~~~-------------------------------~~~~~l~~dv~l~~lA~---~t~G~~gadL~~lv~~ 246 (499)
T 2dhr_A 201 PDVKGREQILRIH-------------------------------ARGKPLAEDVDLALLAK---RTPGFVGADLENLLNE 246 (499)
T ss_dssp CCHHHHHHHHHHT-------------------------------TSSSCCCCSSTTHHHHT---TSCSCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-------------------------------HhcCCCChHHHHHHHHH---hcCCCCHHHHHHHHHH
Confidence 5888888887521 1122344333 333332 2222245777788888
Q ss_pred HHHHHHHcCCCCccHHHHHHHHHHHcCCC
Q 006254 378 AKCLAALEGREKVNVDDLKKAVELVILPR 406 (653)
Q Consensus 378 Ara~Aal~gr~~Vt~eDv~~A~~lvl~hR 406 (653)
|..+|...++..|+.+|+.+|+..++...
T Consensus 247 Aa~~A~~~~~~~It~~dl~~al~~v~~~~ 275 (499)
T 2dhr_A 247 AALLAAREGRRKITMKDLEEAADRVMMLP 275 (499)
T ss_dssp HHHHHTTTCCSSCCSHHHHHHHHHHTTCS
T ss_pred HHHHHHHhCCCccCHHHHHHHHHHHhccc
Confidence 88888888888999999999999887653
No 46
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.64 E-value=2.9e-15 Score=163.89 Aligned_cols=158 Identities=17% Similarity=0.192 Sum_probs=101.2
Q ss_pred ccc-cCceEEecccccCCH------------HHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEe-----cCCCCccc
Q 006254 221 AEA-HRGVLYIDEINLLDE------------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATY-----NPEEGVVR 282 (653)
Q Consensus 221 ~~A-~~giL~IDEi~~l~~------------~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIatt-----Np~eg~l~ 282 (653)
..| .+|+||+|||+.+.. .+|+.||.+|+...+.+ . .+.+. -.++++|+|. ||. .+.
T Consensus 246 ~~ae~~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~-~-~~~~d-~~~ilfI~~gaf~~~~~~--dli 320 (444)
T 1g41_A 246 DAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVST-K-HGMVK-TDHILFIASGAFQVARPS--DLI 320 (444)
T ss_dssp HHHHHHCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEE-T-TEEEE-CTTCEEEEEECCSSCCGG--GSC
T ss_pred HHhccCCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhccccccc-c-cceec-CCcEEEEeccccccCChh--hcc
Confidence 344 688999999998853 38899999999876554 1 12222 2357888886 543 366
Q ss_pred HHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHh
Q 006254 283 EHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALR 362 (653)
Q Consensus 283 ~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~ 362 (653)
|.|++||.++|.++ +++.++...|+.. |.. ..+.+........--.+.+++++++.|++.+..
T Consensus 321 pel~~R~~i~i~l~-~lt~~e~~~Il~~-------~~~---------~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~ 383 (444)
T 1g41_A 321 PELQGRLPIRVELT-ALSAADFERILTE-------PHA---------SLTEQYKALMATEGVNIAFTTDAVKKIAEAAFR 383 (444)
T ss_dssp HHHHTTCCEEEECC-CCCHHHHHHHHHS-------STT---------CHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHH
T ss_pred hHHhcccceeeeCC-CCCHHHHHHHHHH-------HHH---------hHHHHHHHHhcccCceEEECHHHHHHHHHHHHH
Confidence 99999999998998 7899988888741 000 011111111111223568999999999998764
Q ss_pred c----CCCCcchHHHHHHHHHHHHHHc-----C-CCCccHHHHHHHHH
Q 006254 363 G----GCQGHRAELYAARVAKCLAALE-----G-REKVNVDDLKKAVE 400 (653)
Q Consensus 363 ~----~i~s~R~~i~llr~Ara~Aal~-----g-r~~Vt~eDv~~A~~ 400 (653)
. .-.|.|....++...-.-+.++ + .-.|+.++|...+.
T Consensus 384 ~~~~t~~~GaR~L~~~ie~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~ 431 (444)
T 1g41_A 384 VNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALG 431 (444)
T ss_dssp HHHHSCCCGGGHHHHHHHHHHHHHHHHGGGCTTCEEEECHHHHHHHHT
T ss_pred hccCCccCCchHHHHHHHHHHHHHHhhccccCCCeEEEeHHHHHHhcC
Confidence 1 2237788776655433333322 1 22589999987664
No 47
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.64 E-value=2.7e-15 Score=158.98 Aligned_cols=226 Identities=13% Similarity=0.065 Sum_probs=146.5
Q ss_pred ccCCCCCCCCceechHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccc
Q 006254 86 SYGRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL 165 (653)
Q Consensus 86 ~~~~~~~~f~~IvGq~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~ 165 (653)
..+.+|..|++|+|++.++..|...+......++||+||||||||++|++++..+....
T Consensus 28 ~~k~~p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~--------------------- 86 (353)
T 1sxj_D 28 VEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPD--------------------- 86 (353)
T ss_dssp HHHTCCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHH---------------------
T ss_pred HHhcCCCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCc---------------------
Confidence 33567888999999999999997766554456799999999999999999999863100
Q ss_pred cccccccccccccccccCCCeEeCCCCCcccceeeecchhhhh---ccC----CccccccccccccCceEEecccccCCH
Q 006254 166 DEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESV---KTG----TTVFQPGLLAEAHRGVLYIDEINLLDE 238 (653)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~---~~g----~~~~~~Gll~~A~~giL~IDEi~~l~~ 238 (653)
.....++.+..... .|.-.+...+ ... ......+.....+.+||||||++.++.
T Consensus 87 ---------------~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~ 147 (353)
T 1sxj_D 87 ---------------LMKSRILELNASDE----RGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA 147 (353)
T ss_dssp ---------------HHTTSEEEECSSSC----CCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH
T ss_pred ---------------ccccceEEEccccc----cchHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH
Confidence 00122232222110 0000000000 000 000000011123456999999999999
Q ss_pred HHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhh
Q 006254 239 GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERS 318 (653)
Q Consensus 239 ~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~ 318 (653)
..++.|+..|++.. .+..+|.++| ....+.++|.+||. .+.+. |++.++..+++....
T Consensus 148 ~~~~~Ll~~le~~~-------------~~~~~il~~~-~~~~l~~~l~sR~~-~i~~~-~~~~~~~~~~l~~~~------ 205 (353)
T 1sxj_D 148 DAQSALRRTMETYS-------------GVTRFCLICN-YVTRIIDPLASQCS-KFRFK-ALDASNAIDRLRFIS------ 205 (353)
T ss_dssp HHHHHHHHHHHHTT-------------TTEEEEEEES-CGGGSCHHHHHHSE-EEECC-CCCHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHhcC-------------CCceEEEEeC-chhhCcchhhccCc-eEEeC-CCCHHHHHHHHHHHH------
Confidence 99999999999764 1345666777 45568899999997 44776 556666555543210
Q ss_pred hHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCC-CccHHHHHH
Q 006254 319 NEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGRE-KVNVDDLKK 397 (653)
Q Consensus 319 ~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~-~Vt~eDv~~ 397 (653)
....+.++++++++|+++++ ...|..+.+++.+..++.-.+.. .|+.+||.+
T Consensus 206 -----------------------~~~~~~i~~~~l~~l~~~~~----G~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~ 258 (353)
T 1sxj_D 206 -----------------------EQENVKCDDGVLERILDISA----GDLRRGITLLQSASKGAQYLGDGKNITSTQVEE 258 (353)
T ss_dssp -----------------------HTTTCCCCHHHHHHHHHHTS----SCHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHH
T ss_pred -----------------------HHhCCCCCHHHHHHHHHHcC----CCHHHHHHHHHHHHHhcCCCccCccccHHHHHH
Confidence 11346799999999998865 24899899888776665433333 799999998
Q ss_pred HHH
Q 006254 398 AVE 400 (653)
Q Consensus 398 A~~ 400 (653)
++.
T Consensus 259 ~~~ 261 (353)
T 1sxj_D 259 LAG 261 (353)
T ss_dssp HHT
T ss_pred HhC
Confidence 775
No 48
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.64 E-value=5e-15 Score=144.93 Aligned_cols=214 Identities=21% Similarity=0.187 Sum_probs=139.3
Q ss_pred CCCCCCCceechHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccccccc
Q 006254 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (653)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~ 168 (653)
.++..|++++|++..+..|...+-.....+++|+||+|||||++++.+++.+...
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~------------------------- 65 (226)
T 2chg_A 11 YRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGE------------------------- 65 (226)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGG-------------------------
T ss_pred cCCCCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhcc-------------------------
Confidence 4567789999999999988665554455679999999999999999999876310
Q ss_pred ccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHHHHH
Q 006254 169 AEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVL 248 (653)
Q Consensus 169 ~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~l 248 (653)
.....++.+...... +.-.+...+.. ......+....+++|||||++.++...++.|+..+
T Consensus 66 ------------~~~~~~~~~~~~~~~----~~~~~~~~~~~---~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l 126 (226)
T 2chg_A 66 ------------NWRDNFIEMNASDER----GIDVVRHKIKE---FARTAPIGGAPFKIIFLDEADALTADAQAALRRTM 126 (226)
T ss_dssp ------------GGGGGEEEEETTCTT----CHHHHHHHHHH---HHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHH
T ss_pred ------------ccccceEEecccccc----ChHHHHHHHHH---HhcccCCCccCceEEEEeChhhcCHHHHHHHHHHH
Confidence 001233333222110 00000000000 00001122345679999999999999999999999
Q ss_pred HcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhhhhh
Q 006254 249 TEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEE 328 (653)
Q Consensus 249 ~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~ 328 (653)
+... .++.+|+++| ....+.++|++||. .+.+. |++.++..+++.....
T Consensus 127 ~~~~-------------~~~~~i~~~~-~~~~~~~~l~~r~~-~i~~~-~~~~~~~~~~l~~~~~--------------- 175 (226)
T 2chg_A 127 EMYS-------------KSCRFILSCN-YVSRIIEPIQSRCA-VFRFK-PVPKEAMKKRLLEICE--------------- 175 (226)
T ss_dssp HHTT-------------TTEEEEEEES-CGGGSCHHHHTTSE-EEECC-CCCHHHHHHHHHHHHH---------------
T ss_pred HhcC-------------CCCeEEEEeC-ChhhcCHHHHHhCc-eeecC-CCCHHHHHHHHHHHHH---------------
Confidence 8642 2467888888 55678899999998 55777 5676666555442100
Q ss_pred hhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHHH
Q 006254 329 TDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (653)
Q Consensus 329 ~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~ 400 (653)
...+.+++++++.+++.+ .+ ..|..+.+++.+...+ ..|+.+||++++.
T Consensus 176 --------------~~~~~~~~~~~~~l~~~~-~g---~~r~l~~~l~~~~~~~-----~~I~~~~v~~~~~ 224 (226)
T 2chg_A 176 --------------KEGVKITEDGLEALIYIS-GG---DFRKAINALQGAAAIG-----EVVDADTIYQITA 224 (226)
T ss_dssp --------------HHTCCBCHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTC-----SCBCHHHHHHHHH
T ss_pred --------------HcCCCCCHHHHHHHHHHc-CC---CHHHHHHHHHHHHhcC-----ceecHHHHHHHhc
Confidence 013468899998888654 22 4677777765543332 6899999999875
No 49
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.63 E-value=2.9e-16 Score=177.36 Aligned_cols=235 Identities=20% Similarity=0.201 Sum_probs=135.6
Q ss_pred CCceechHHHHHHHHH----hcccC--CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccc
Q 006254 94 LAAVVGQDAIKTALLL----GAIDR--EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDE 167 (653)
Q Consensus 94 f~~IvGq~~~k~aL~~----~av~p--~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~ 167 (653)
..+++|++.++..+.. ..++. ...+++|+||||||||++|++|+..+..
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~------------------------- 134 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGR------------------------- 134 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTC-------------------------
T ss_pred HHHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCC-------------------------
Confidence 3569999999887722 22222 2346999999999999999999998852
Q ss_pred cccccccccccccccCCCeEeCCCCC--cccceeeecchhhhhccCCccc-cccccccc--cCceEEecccccCCHH---
Q 006254 168 KAEYDTAGNLKTQIARSPFVQIPLGV--TEDRLIGSVDVEESVKTGTTVF-QPGLLAEA--HRGVLYIDEINLLDEG--- 239 (653)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~fv~l~~~~--~~~~l~G~~d~~~~~~~g~~~~-~~Gll~~A--~~giL~IDEi~~l~~~--- 239 (653)
+|+.+..+. ....++|... -+.|...- ....+..+ .++|||||||+.++..
T Consensus 135 -----------------~~~~i~~~~~~~~~~~~g~~~----~~ig~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~ 193 (543)
T 3m6a_A 135 -----------------KFVRISLGGVRDESEIRGHRR----TYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRG 193 (543)
T ss_dssp -----------------EEEEECCCC------------------------CHHHHHHTTCSSSEEEEEEESSSCC-----
T ss_pred -----------------CeEEEEecccchhhhhhhHHH----HHhccCchHHHHHHHHhhccCCEEEEhhhhhhhhhhcc
Confidence 222222211 1222333210 00011000 00122233 6779999999999887
Q ss_pred -HHHHHHHHHHcCceE-EeeCCeeEEee-cCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHh
Q 006254 240 -ISNLLLNVLTEGVNI-VEREGISFKHP-CKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQE 316 (653)
Q Consensus 240 -~~~~Ll~~l~~g~~~-v~r~G~s~~~p-~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~ 316 (653)
.++.|+.+|+.+.+. +...+....++ .++++|+|+| ....++++|++||.+ |.+. +++.+++.+|+.... .
T Consensus 194 ~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN-~~~~l~~aL~~R~~v-i~~~-~~~~~e~~~Il~~~l--~- 267 (543)
T 3m6a_A 194 DPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATAN-NLATIPGPLRDRMEI-INIA-GYTEIEKLEIVKDHL--L- 267 (543)
T ss_dssp ----CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECS-STTTSCHHHHHHEEE-EECC-CCCHHHHHHHHHHTH--H-
T ss_pred CHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccC-ccccCCHHHHhhcce-eeeC-CCCHHHHHHHHHHHH--H-
Confidence 569999999876532 23333333333 5789999999 566899999999975 5887 568888888876321 0
Q ss_pred hhhHHhhhhhhhhhHHHHHHHHHHhh-hcccCCCHHHHHHHHH-HHHhcCCCCcchHHHHHHHHHHHHHH---c---CCC
Q 006254 317 RSNEVFKMVEEETDLAKTQIILAREY-LKDVAIGREQLKYLVM-EALRGGCQGHRAELYAARVAKCLAAL---E---GRE 388 (653)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~i~~ar~~-l~~v~is~~~l~~l~~-~~~~~~i~s~R~~i~llr~Ara~Aal---~---gr~ 388 (653)
.+....... ...+.++++++..+++ +.|..|+ |...+.++.+-..|+. . +..
T Consensus 268 -----------------~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~v---R~L~~~i~~~~~~aa~~~~~~~~~~~ 327 (543)
T 3m6a_A 268 -----------------PKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGV---RSLERQLAAICRKAAKAIVAEERKRI 327 (543)
T ss_dssp -----------------HHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSS---HHHHHHHHHHHHHHHHHHHTTCCSCC
T ss_pred -----------------HHHHHHcCCCcccccCCHHHHHHHHHhCChhhch---hHHHHHHHHHHHHHHHHHHhcCCcce
Confidence 011111111 2356789999999877 5555554 5544443332223322 2 345
Q ss_pred CccHHHHHHHHH
Q 006254 389 KVNVDDLKKAVE 400 (653)
Q Consensus 389 ~Vt~eDv~~A~~ 400 (653)
.|+.+|+.+++.
T Consensus 328 ~It~~~l~~~Lg 339 (543)
T 3m6a_A 328 TVTEKNLQDFIG 339 (543)
T ss_dssp EECTTTTHHHHC
T ss_pred ecCHHHHHHHhC
Confidence 799999988773
No 50
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.62 E-value=9.7e-17 Score=186.86 Aligned_cols=156 Identities=19% Similarity=0.252 Sum_probs=115.3
Q ss_pred CCCCCCCceechHHHHHHHHHhcccCC-------------CceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCC
Q 006254 89 RQFFPLAAVVGQDAIKTALLLGAIDRE-------------IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADP 155 (653)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~~~av~p~-------------~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p 155 (653)
.+.+.|++|.|.+++|+.|......|. ..||||+||||||||++|++|+..+
T Consensus 471 ~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~--------------- 535 (806)
T 3cf2_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC--------------- 535 (806)
T ss_dssp CCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT---------------
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh---------------
Confidence 456789999999999999965544431 3569999999999999999999976
Q ss_pred CCCCcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccc---cCceEEecc
Q 006254 156 TCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDE 232 (653)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~IDE 232 (653)
+.+|+.+......+.++|.- ++.+ .-+|..| .++||||||
T Consensus 536 ---------------------------~~~f~~v~~~~l~s~~vGes--e~~v--------r~lF~~Ar~~~P~IifiDE 578 (806)
T 3cf2_A 536 ---------------------------QANFISIKGPELLTMWFGES--EANV--------REIFDKARQAAPCVLFFDE 578 (806)
T ss_dssp ---------------------------TCEEEECCHHHHHTTTCSSC--HHHH--------HHHHHHHHTTCSEEEECSC
T ss_pred ---------------------------CCceEEeccchhhccccchH--HHHH--------HHHHHHHHHcCCceeechh
Confidence 47888887777777788842 1211 1244444 468999999
Q ss_pred cccCCH--------------HHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHh--hhccccccc
Q 006254 233 INLLDE--------------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSAD 296 (653)
Q Consensus 233 i~~l~~--------------~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLld--Rf~~~v~l~ 296 (653)
|+.+-. .+++.||..|+.-. ...+++|||||| .+..|+++|++ ||+.+|+++
T Consensus 579 iDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~-----------~~~~V~vi~aTN-~p~~lD~AllRpgRfd~~i~v~ 646 (806)
T 3cf2_A 579 LDSIAKARGGNIGDGGGAADRVINQILTEMDGMS-----------TKKNVFIIGATN-RPDIIDPAILRPGRLDQLIYIP 646 (806)
T ss_dssp GGGCC--------------CHHHHHHHHHHHSSC-----------SSSSEEEECC-C-CSSSSCHHHHSTTTSCCEEEC-
T ss_pred hhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC-----------CCCCEEEEEeCC-CchhCCHhHcCCCcceEEEEEC
Confidence 998731 36788999888422 112578999999 88899999999 999999999
Q ss_pred CCCCHhhHHHHHH
Q 006254 297 LPMTFEDRVAAVG 309 (653)
Q Consensus 297 ~p~~~~~r~~I~~ 309 (653)
.| +.+.|.+|++
T Consensus 647 lP-d~~~R~~il~ 658 (806)
T 3cf2_A 647 LP-DEKSRVAILK 658 (806)
T ss_dssp -----CHHHHTTT
T ss_pred Cc-CHHHHHHHHH
Confidence 65 8888988875
No 51
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.61 E-value=1.4e-15 Score=180.69 Aligned_cols=215 Identities=22% Similarity=0.255 Sum_probs=132.1
Q ss_pred CceechHHHHHHHHHhcc-------cCC--CceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccc
Q 006254 95 AAVVGQDAIKTALLLGAI-------DRE--IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL 165 (653)
Q Consensus 95 ~~IvGq~~~k~aL~~~av-------~p~--~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~ 165 (653)
..|+|++.+++.+..++. +|. .++|||+||||||||++|++||..+..
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~----------------------- 614 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD----------------------- 614 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS-----------------------
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC-----------------------
Confidence 568999998887732211 221 258999999999999999999998742
Q ss_pred cccccccccccccccccCCCeEeCCCC-----CcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHH
Q 006254 166 DEKAEYDTAGNLKTQIARSPFVQIPLG-----VTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGI 240 (653)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~fv~l~~~-----~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~ 240 (653)
...+|+.++++ ...++++|...-.-+...+. .-.+.+....++|||||||+.+++++
T Consensus 615 ----------------~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g--~l~~~~~~~~~~vl~lDEi~~l~~~~ 676 (854)
T 1qvr_A 615 ----------------TEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGG--QLTEAVRRRPYSVILFDEIEKAHPDV 676 (854)
T ss_dssp ----------------SGGGEEEECTTTCCSSGGGGGC----------------CHHHHHHHCSSEEEEESSGGGSCHHH
T ss_pred ----------------CCCcEEEEechhccchhHHHHHcCCCCCCcCccccc--hHHHHHHhCCCeEEEEecccccCHHH
Confidence 12233333322 22334444210000000000 00122333457899999999999999
Q ss_pred HHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCC-------------------------CCcccHHHHhhhcccccc
Q 006254 241 SNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE-------------------------EGVVREHLLDRIAINLSA 295 (653)
Q Consensus 241 ~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~-------------------------eg~l~~aLldRf~~~v~l 295 (653)
++.|+++|++|.++ ...|..+.+ .+++||+|||.. .+.|+++|++||+.++.+
T Consensus 677 ~~~Ll~~l~~~~~~-~~~g~~vd~-~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~ 754 (854)
T 1qvr_A 677 FNILLQILDDGRLT-DSHGRTVDF-RNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVF 754 (854)
T ss_dssp HHHHHHHHTTTEEC-CSSSCCEEC-TTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBC
T ss_pred HHHHHHHhccCceE-CCCCCEecc-CCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeC
Confidence 99999999999854 222333333 256799999961 356889999999888776
Q ss_pred cCCCCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHH--hcCCCCcchHHH
Q 006254 296 DLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEAL--RGGCQGHRAELY 373 (653)
Q Consensus 296 ~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~--~~~i~s~R~~i~ 373 (653)
. |++.++...|+.. +..... .++ ......+.++++++++|++++| .+|+ |....
T Consensus 755 ~-pl~~edi~~i~~~---~l~~~~--------------~~~---~~~~~~~~~~~~a~~~L~~~~~~~~gn~---R~L~~ 810 (854)
T 1qvr_A 755 R-PLTKEQIRQIVEI---QLSYLR--------------ARL---AEKRISLELTEAAKDFLAERGYDPVFGA---RPLRR 810 (854)
T ss_dssp C-CCCHHHHHHHHHH---HHHHHH--------------HHH---HTTTCEEEECHHHHHHHHHHHCBTTTBT---STHHH
T ss_pred C-CCCHHHHHHHHHH---HHHHHH--------------HHH---HhCCceEEECHHHHHHHHHcCCCCCCCh---HHHHH
Confidence 5 6676666555553 322110 011 0111136799999999999999 5655 55555
Q ss_pred HHH
Q 006254 374 AAR 376 (653)
Q Consensus 374 llr 376 (653)
+++
T Consensus 811 ~i~ 813 (854)
T 1qvr_A 811 VIQ 813 (854)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 52
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.61 E-value=4.9e-16 Score=157.94 Aligned_cols=213 Identities=22% Similarity=0.250 Sum_probs=134.8
Q ss_pred CCCCCCCCceechHHHHHHHHHh--cc-c---------CCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCC
Q 006254 88 GRQFFPLAAVVGQDAIKTALLLG--AI-D---------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADP 155 (653)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~~~--av-~---------p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p 155 (653)
..+.+.|++|+|++.++..+.-. .+ . ....||+|+||||||||+++++|+..+.
T Consensus 9 ~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~-------------- 74 (254)
T 1ixz_A 9 EAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-------------- 74 (254)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT--------------
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC--------------
Confidence 34678899999999988877211 11 1 1134699999999999999999999874
Q ss_pred CCCCcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccc---cCceEEecc
Q 006254 156 TCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDE 232 (653)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~IDE 232 (653)
.+++.+......+.+.|.. .+. ...++..+ ...++|+||
T Consensus 75 ----------------------------~~~i~~~~~~~~~~~~~~~--~~~--------i~~~~~~~~~~~~~i~~~De 116 (254)
T 1ixz_A 75 ----------------------------VPFITASGSDFVEMFVGVG--AAR--------VRDLFETAKRHAPCIVFIDE 116 (254)
T ss_dssp ----------------------------CCEEEEEHHHHHHSCTTHH--HHH--------HHHHHHHHTTSSSEEEEEET
T ss_pred ----------------------------CCEEEeeHHHHHHHHhhHH--HHH--------HHHHHHHHHhcCCeEEEehh
Confidence 2233322111001111110 000 00122222 246999999
Q ss_pred cccCC--------------HHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHh--hhccccccc
Q 006254 233 INLLD--------------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSAD 296 (653)
Q Consensus 233 i~~l~--------------~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLld--Rf~~~v~l~ 296 (653)
|+.+. ...++.++..|+.+.. ...+++++++| .+..+++++++ ||+..+.++
T Consensus 117 id~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~-----------~~~~i~~a~t~-~p~~ld~~l~r~~rf~~~i~i~ 184 (254)
T 1ixz_A 117 IDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK-----------DTAIVVMAATN-RPDILDPALLRPGRFDRQIAID 184 (254)
T ss_dssp HHHHHC---------CHHHHHHHHHHHHHHHTCCT-----------TCCEEEEEEES-CGGGSCGGGGSTTSSCEEEECC
T ss_pred hhhhhcccCccccccchHHHHHHHHHHHHHhCCCC-----------CCCEEEEEccC-CchhCCHHHcCCCcCCeEEeeC
Confidence 97652 2345677777775431 12367888888 66779999998 899999998
Q ss_pred CCCCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHH-HHHHHHHHHhcCCCCcchHHHHH
Q 006254 297 LPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQ-LKYLVMEALRGGCQGHRAELYAA 375 (653)
Q Consensus 297 ~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~-l~~l~~~~~~~~i~s~R~~i~ll 375 (653)
. ++.++|.+|++... ....++++. +..++. .....+.|....++
T Consensus 185 ~-p~~~~r~~il~~~~-------------------------------~~~~~~~~~~~~~la~---~~~G~~~~dl~~~~ 229 (254)
T 1ixz_A 185 A-PDVKGREQILRIHA-------------------------------RGKPLAEDVDLALLAK---RTPGFVGADLENLL 229 (254)
T ss_dssp S-CCHHHHHHHHHHHH-------------------------------TTSCBCTTCCHHHHHH---TCTTCCHHHHHHHH
T ss_pred C-cCHHHHHHHHHHHH-------------------------------cCCCCCcccCHHHHHH---HcCCCCHHHHHHHH
Confidence 5 58888888875210 011233222 344433 23333457778888
Q ss_pred HHHHHHHHHcCCCCccHHHHHHHH
Q 006254 376 RVAKCLAALEGREKVNVDDLKKAV 399 (653)
Q Consensus 376 r~Ara~Aal~gr~~Vt~eDv~~A~ 399 (653)
+.|...|...++..|+.+|+++|+
T Consensus 230 ~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 230 NEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp HHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred HHHHHHHHHhcCCCcCHHHHHHHh
Confidence 888888888888899999999885
No 53
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.61 E-value=1.4e-14 Score=153.76 Aligned_cols=222 Identities=19% Similarity=0.232 Sum_probs=151.1
Q ss_pred CCCCCCCceechHHHHHHHHHhccc-----CCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccc
Q 006254 89 RQFFPLAAVVGQDAIKTALLLGAID-----REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWED 163 (653)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~~~av~-----p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~ 163 (653)
.++..|+.++|++.++..+...+-. ....+++|+|||||||||++++|+..+.
T Consensus 19 lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~---------------------- 76 (334)
T 1in4_A 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ---------------------- 76 (334)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHT----------------------
T ss_pred cCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhC----------------------
Confidence 3466789999999988888543321 1236799999999999999999999874
Q ss_pred cccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHH
Q 006254 164 GLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNL 243 (653)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~ 243 (653)
.++........ ...-|+..... ....+.|+||||++.+....++.
T Consensus 77 --------------------~~~~~~sg~~~----~~~~~l~~~~~-----------~~~~~~v~~iDE~~~l~~~~~e~ 121 (334)
T 1in4_A 77 --------------------TNIHVTSGPVL----VKQGDMAAILT-----------SLERGDVLFIDEIHRLNKAVEEL 121 (334)
T ss_dssp --------------------CCEEEEETTTC----CSHHHHHHHHH-----------HCCTTCEEEEETGGGCCHHHHHH
T ss_pred --------------------CCEEEEechHh----cCHHHHHHHHH-----------HccCCCEEEEcchhhcCHHHHHH
Confidence 11111111010 01111111000 01235799999999999988999
Q ss_pred HHHHHHcCceEEe-eCCe---eE-EeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhh
Q 006254 244 LLNVLTEGVNIVE-REGI---SF-KHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERS 318 (653)
Q Consensus 244 Ll~~l~~g~~~v~-r~G~---s~-~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~ 318 (653)
|+..++.....+- ..+. .. .....|.+++++| ..+.|++.+++||++.+.++ |++.++..+|++...
T Consensus 122 L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~-~~~~Ls~~l~sR~~l~~~Ld-~~~~~~l~~iL~~~~------ 193 (334)
T 1in4_A 122 LYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATT-RSGLLSSPLRSRFGIILELD-FYTVKELKEIIKRAA------ 193 (334)
T ss_dssp HHHHHHTSCCCC---------------CCCEEEEEES-CGGGSCHHHHTTCSEEEECC-CCCHHHHHHHHHHHH------
T ss_pred HHHHHHhcccceeeccCcccccccccCCCeEEEEecC-CcccCCHHHHHhcCceeeCC-CCCHHHHHHHHHHHH------
Confidence 9988876532110 0010 01 1123588889888 67899999999999887888 678888777776321
Q ss_pred hHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHH
Q 006254 319 NEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKA 398 (653)
Q Consensus 319 ~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A 398 (653)
+ . ..+.++++++..|+..+ +. +.|..+.+++.+...|...|...|+.+++++|
T Consensus 194 ---------------------~-~-~~~~~~~~~~~~ia~~~---~G-~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~a 246 (334)
T 1in4_A 194 ---------------------S-L-MDVEIEDAAAEMIAKRS---RG-TPRIAIRLTKRVRDMLTVVKADRINTDIVLKT 246 (334)
T ss_dssp ---------------------H-H-TTCCBCHHHHHHHHHTS---TT-CHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHH
T ss_pred ---------------------H-H-cCCCcCHHHHHHHHHhc---CC-ChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHH
Confidence 0 1 14678899888776543 33 58999999999999999999999999999999
Q ss_pred HHHH
Q 006254 399 VELV 402 (653)
Q Consensus 399 ~~lv 402 (653)
+...
T Consensus 247 l~~~ 250 (334)
T 1in4_A 247 MEVL 250 (334)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9874
No 54
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.60 E-value=2e-14 Score=143.19 Aligned_cols=208 Identities=13% Similarity=0.163 Sum_probs=135.7
Q ss_pred CCCCCceech---HHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccc
Q 006254 91 FFPLAAVVGQ---DAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDE 167 (653)
Q Consensus 91 ~~~f~~IvGq---~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~ 167 (653)
..+|++++|. +.+...+...+..+...+|+|+||||||||++|++++..+..
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~------------------------- 78 (242)
T 3bos_A 24 DETFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANE------------------------- 78 (242)
T ss_dssp TCSTTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHH-------------------------
T ss_pred CCChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHH-------------------------
Confidence 4688999872 356666644444445688999999999999999999997641
Q ss_pred cccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHH--HHHHH
Q 006254 168 KAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGI--SNLLL 245 (653)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~--~~~Ll 245 (653)
...+++.+......+.+.. .+ -.....++|||||++.++... ++.|+
T Consensus 79 --------------~~~~~~~~~~~~~~~~~~~------~~-----------~~~~~~~vliiDe~~~~~~~~~~~~~l~ 127 (242)
T 3bos_A 79 --------------LERRSFYIPLGIHASISTA------LL-----------EGLEQFDLICIDDVDAVAGHPLWEEAIF 127 (242)
T ss_dssp --------------TTCCEEEEEGGGGGGSCGG------GG-----------TTGGGSSEEEEETGGGGTTCHHHHHHHH
T ss_pred --------------cCCeEEEEEHHHHHHHHHH------HH-----------HhccCCCEEEEeccccccCCHHHHHHHH
Confidence 0122332222211111100 00 011346799999999997765 78888
Q ss_pred HHHHcCceEEeeCCeeEEeecCcEEEEEecCCCC---cccHHHHhhhc--ccccccCCCCHhhHHHHHHHHHHHHhhhhH
Q 006254 246 NVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG---VVREHLLDRIA--INLSADLPMTFEDRVAAVGIATQFQERSNE 320 (653)
Q Consensus 246 ~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg---~l~~aLldRf~--~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~ 320 (653)
..++.... ...+.+|.++|.... .+.+.|++||. ..+.+. |++.+++.+++.....
T Consensus 128 ~~l~~~~~-----------~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~-~~~~~~~~~~l~~~~~------- 188 (242)
T 3bos_A 128 DLYNRVAE-----------QKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQ-PMMDDEKLAALQRRAA------- 188 (242)
T ss_dssp HHHHHHHH-----------HCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECC-CCCGGGHHHHHHHHHH-------
T ss_pred HHHHHHHH-----------cCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeC-CCCHHHHHHHHHHHHH-------
Confidence 88764320 012335566664332 35589999995 666887 5677877777653211
Q ss_pred HhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHHH
Q 006254 321 VFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (653)
Q Consensus 321 ~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~ 400 (653)
...+.+++++++++++.+ .+ ..|..+.+++.+...|...++ .|+.+||++++.
T Consensus 189 ----------------------~~~~~~~~~~~~~l~~~~-~g---~~r~l~~~l~~~~~~a~~~~~-~It~~~v~~~l~ 241 (242)
T 3bos_A 189 ----------------------MRGLQLPEDVGRFLLNRM-AR---DLRTLFDVLDRLDKASMVHQR-KLTIPFVKEMLR 241 (242)
T ss_dssp ----------------------HTTCCCCHHHHHHHHHHT-TT---CHHHHHHHHHHHHHHHHHHTC-CCCHHHHHHHHT
T ss_pred ----------------------HcCCCCCHHHHHHHHHHc-cC---CHHHHHHHHHHHHHHHHHhCC-CCcHHHHHHHhh
Confidence 113579999999998765 22 578999999888877765664 699999999875
No 55
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.59 E-value=1.7e-15 Score=156.35 Aligned_cols=212 Identities=22% Similarity=0.252 Sum_probs=131.6
Q ss_pred CCCCCCCceechHHHHHHHHHh--cc-c---------CCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCC
Q 006254 89 RQFFPLAAVVGQDAIKTALLLG--AI-D---------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT 156 (653)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~~~--av-~---------p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~ 156 (653)
.+.+.|++|+|++.++..+.-. .+ . ....||+|+||+|||||+++++|+..+.
T Consensus 34 ~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~--------------- 98 (278)
T 1iy2_A 34 APKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR--------------- 98 (278)
T ss_dssp CCCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT---------------
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC---------------
Confidence 3678899999999988877211 11 1 0134699999999999999999999874
Q ss_pred CCCcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccc---cCceEEeccc
Q 006254 157 CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEI 233 (653)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~IDEi 233 (653)
.+++.+......+.+.|.. .+. ...++..+ ...++|+|||
T Consensus 99 ---------------------------~~~i~~~~~~~~~~~~~~~--~~~--------i~~~~~~~~~~~~~i~~iDei 141 (278)
T 1iy2_A 99 ---------------------------VPFITASGSDFVEMFVGVG--AAR--------VRDLFETAKRHAPCIVFIDEI 141 (278)
T ss_dssp ---------------------------CCEEEEEHHHHHHSTTTHH--HHH--------HHHHHHHHHTSCSEEEEEETH
T ss_pred ---------------------------CCEEEecHHHHHHHHhhHH--HHH--------HHHHHHHHHhcCCcEEehhhh
Confidence 2233222110000111100 000 00122222 2469999999
Q ss_pred ccCC--------------HHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHh--hhcccccccC
Q 006254 234 NLLD--------------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADL 297 (653)
Q Consensus 234 ~~l~--------------~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLld--Rf~~~v~l~~ 297 (653)
+.+. ...++.++..++.+. ....+++++++| .+..+++++++ ||+..+.+..
T Consensus 142 d~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~-----------~~~~~i~~a~t~-~p~~ld~~l~r~~rf~~~i~i~~ 209 (278)
T 1iy2_A 142 DAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE-----------KDTAIVVMAATN-RPDILDPALLRPGRFDRQIAIDA 209 (278)
T ss_dssp HHHHCC--------CHHHHHHHHHHHHHHTTCC-----------TTCCEEEEEEES-CTTSSCHHHHSTTSSCCEEECCC
T ss_pred HhhhcccccccCCcchHHHHHHHHHHHHHhCCC-----------CCCCEEEEEecC-CchhCCHhHcCCCcCCeEEEeCC
Confidence 7652 234455555555442 112367888888 56779999997 8999999985
Q ss_pred CCCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHH-HHHHHHHHHhcCCCCcchHHHHHH
Q 006254 298 PMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQ-LKYLVMEALRGGCQGHRAELYAAR 376 (653)
Q Consensus 298 p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~-l~~l~~~~~~~~i~s~R~~i~llr 376 (653)
++.++|.+|++... ....+++++ +..++. .....+.|....+++
T Consensus 210 -p~~~~r~~il~~~~-------------------------------~~~~~~~~~~~~~la~---~~~G~~~~dl~~l~~ 254 (278)
T 1iy2_A 210 -PDVKGREQILRIHA-------------------------------RGKPLAEDVDLALLAK---RTPGFVGADLENLLN 254 (278)
T ss_dssp -CCHHHHHHHHHHHH-------------------------------TTSCBCTTCCHHHHHH---TCTTCCHHHHHHHHH
T ss_pred -cCHHHHHHHHHHHH-------------------------------ccCCCCcccCHHHHHH---HcCCCCHHHHHHHHH
Confidence 58888888876210 012233322 333432 222224466667888
Q ss_pred HHHHHHHHcCCCCccHHHHHHHH
Q 006254 377 VAKCLAALEGREKVNVDDLKKAV 399 (653)
Q Consensus 377 ~Ara~Aal~gr~~Vt~eDv~~A~ 399 (653)
.|..+|...++..|+.+|+++|+
T Consensus 255 ~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 255 EAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHHHHTTCCSBCHHHHHHHT
T ss_pred HHHHHHHHhCCCCcCHHHHHHHh
Confidence 88888888888899999999885
No 56
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.58 E-value=8e-15 Score=162.73 Aligned_cols=208 Identities=16% Similarity=0.144 Sum_probs=134.4
Q ss_pred CCCCCCCceechHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccccccc
Q 006254 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (653)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~ 168 (653)
.++..|+.|+|++..++.+...+......++||+||||||||++|++|+..+..-
T Consensus 174 ~r~~~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~------------------------- 228 (468)
T 3pxg_A 174 AKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINN------------------------- 228 (468)
T ss_dssp TTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSS-------------------------
T ss_pred HhcCCCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhC-------------------------
Confidence 4566799999999999988665555677899999999999999999999987410
Q ss_pred ccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccc---cccCceEEecccccCCHHHHHHHH
Q 006254 169 AEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLA---EAHRGVLYIDEINLLDEGISNLLL 245 (653)
Q Consensus 169 ~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~---~A~~giL~IDEi~~l~~~~~~~Ll 245 (653)
..+....+.+|+.++.+ ..+.|.. +.. ..+++. .+.++||||| ...+.++.|+
T Consensus 229 -------~~p~~l~~~~~~~l~~~---~~~~g~~-------e~~---~~~~~~~~~~~~~~iLfiD----~~~~a~~~L~ 284 (468)
T 3pxg_A 229 -------EVPEILRDKRVMTLDMG---TKYRGEF-------EDR---LKKVMDEIRQAGNIILFID----AAIDASNILK 284 (468)
T ss_dssp -------CSCTTTSSCCEECC--------------------CTT---HHHHHHHHHTCCCCEEEEC----C--------C
T ss_pred -------CCChhhcCCeEEEeeCC---ccccchH-------HHH---HHHHHHHHHhcCCeEEEEe----CchhHHHHHH
Confidence 00111235667776655 2333321 010 011222 2357899999 5566778888
Q ss_pred HHHHcCceEEeeCCeeEEeecCcEEEEEecCCCC----cccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHH
Q 006254 246 NVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG----VVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEV 321 (653)
Q Consensus 246 ~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg----~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~ 321 (653)
.+|+.| .+++|++||+.+. .++++|++||.. |.+.. ++.+++.+|++... .
T Consensus 285 ~~L~~g---------------~v~vI~at~~~e~~~~~~~~~al~~Rf~~-i~v~~-p~~e~~~~iL~~~~---~----- 339 (468)
T 3pxg_A 285 PSLARG---------------ELQCIGATTLDEYRKYIEKDAALERRFQP-IQVDQ-PSVDESIQILQGLR---D----- 339 (468)
T ss_dssp CCTTSS---------------SCEEEEECCTTTTHHHHTTCSHHHHSEEE-EECCC-CCHHHHHHHHHHTT---T-----
T ss_pred HhhcCC---------------CEEEEecCCHHHHHHHhhcCHHHHHhCcc-ceeCC-CCHHHHHHHHHHHH---H-----
Confidence 888765 3689999998773 688999999996 68884 58888888776321 1
Q ss_pred hhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCC--CcchHHHHHHHHHHHHHHcCC
Q 006254 322 FKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQ--GHRAELYAARVAKCLAALEGR 387 (653)
Q Consensus 322 ~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~--s~R~~i~llr~Ara~Aal~gr 387 (653)
.+ ....++.++++++..++.++...... ..+..+.++..|.+.+.+.+.
T Consensus 340 --~~---------------~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~~~~~~~~ 390 (468)
T 3pxg_A 340 --RY---------------EAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSF 390 (468)
T ss_dssp --TS---------------GGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHHTT
T ss_pred --HH---------------HHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHHHHHhccC
Confidence 00 11235789999999999988775331 245788888888888877654
No 57
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.57 E-value=1.3e-14 Score=152.62 Aligned_cols=214 Identities=15% Similarity=0.067 Sum_probs=135.7
Q ss_pred cCCCCCCCCceechHHHHHHHHHhcccCCC-ceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccc
Q 006254 87 YGRQFFPLAAVVGQDAIKTALLLGAIDREI-GGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL 165 (653)
Q Consensus 87 ~~~~~~~f~~IvGq~~~k~aL~~~av~p~~-~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~ 165 (653)
.+.+|..|++|+|++.++..|...+..... ..+|+.||||||||++|+++++.+.
T Consensus 18 ~k~rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~------------------------ 73 (324)
T 3u61_B 18 QKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVN------------------------ 73 (324)
T ss_dssp HHSCCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTT------------------------
T ss_pred HhhCCCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC------------------------
Confidence 356788899999999999888654443332 4467788899999999999999873
Q ss_pred cccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCC-HHHHHHH
Q 006254 166 DEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLD-EGISNLL 244 (653)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~-~~~~~~L 244 (653)
.+|+.+..+.. |.-++...+.. +....-.....+||||||++.++ .+.++.|
T Consensus 74 ------------------~~~~~i~~~~~-----~~~~i~~~~~~----~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L 126 (324)
T 3u61_B 74 ------------------ADMMFVNGSDC-----KIDFVRGPLTN----FASAASFDGRQKVIVIDEFDRSGLAESQRHL 126 (324)
T ss_dssp ------------------EEEEEEETTTC-----CHHHHHTHHHH----HHHBCCCSSCEEEEEEESCCCGGGHHHHHHH
T ss_pred ------------------CCEEEEccccc-----CHHHHHHHHHH----HHhhcccCCCCeEEEEECCcccCcHHHHHHH
Confidence 23444432221 11011111100 00000001246799999999999 9999999
Q ss_pred HHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhh
Q 006254 245 LNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKM 324 (653)
Q Consensus 245 l~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~ 324 (653)
+..+++.. .++.+|+++| ....+.++|++||.. +.+. +++.+++.+|+........
T Consensus 127 ~~~le~~~-------------~~~~iI~~~n-~~~~l~~~l~sR~~~-i~~~-~~~~~e~~~il~~~~~~l~-------- 182 (324)
T 3u61_B 127 RSFMEAYS-------------SNCSIIITAN-NIDGIIKPLQSRCRV-ITFG-QPTDEDKIEMMKQMIRRLT-------- 182 (324)
T ss_dssp HHHHHHHG-------------GGCEEEEEES-SGGGSCTTHHHHSEE-EECC-CCCHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHhCC-------------CCcEEEEEeC-CccccCHHHHhhCcE-EEeC-CCCHHHHHHHHHHHHHHHH--------
Confidence 99998642 3568899999 455788999999975 5887 5688888877764332211
Q ss_pred hhhhhhHHHHHHHHHHhhhcccCCCH-HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHH
Q 006254 325 VEEETDLAKTQIILAREYLKDVAIGR-EQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (653)
Q Consensus 325 ~~~~~~~l~~~i~~ar~~l~~v~is~-~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~ 399 (653)
.+. ....+.+++ ++++.+++.+ .+ ..|..++.+..+. ....|+.+++.++.
T Consensus 183 ----------~~~----~~~~~~~~~~~~~~~l~~~~-~g---d~R~a~~~L~~~~------~~~~i~~~~v~~~~ 234 (324)
T 3u61_B 183 ----------EIC----KHEGIAIADMKVVAALVKKN-FP---DFRKTIGELDSYS------SKGVLDAGILSLVT 234 (324)
T ss_dssp ----------HHH----HHHTCCBSCHHHHHHHHHHT-CS---CTTHHHHHHHHHG------GGTCBCC-------
T ss_pred ----------HHH----HHcCCCCCcHHHHHHHHHhC-CC---CHHHHHHHHHHHh------ccCCCCHHHHHHHh
Confidence 111 112467888 9999888763 22 4688888776543 33468988887765
No 58
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.56 E-value=5.1e-14 Score=150.42 Aligned_cols=246 Identities=17% Similarity=0.108 Sum_probs=151.4
Q ss_pred CCCCCceechHHHHHHHHHhc--c--cCCCceEEEECCCCCHHHHHHHHHHhhCCCCe-----eeccccccCCCCCCCc-
Q 006254 91 FFPLAAVVGQDAIKTALLLGA--I--DREIGGIAISGRRGTAKTVMARGLHAILPPIE-----VVVGSIANADPTCPDE- 160 (653)
Q Consensus 91 ~~~f~~IvGq~~~k~aL~~~a--v--~p~~~gVLL~GppGTGKT~lArala~~l~~~~-----~v~~~~~nc~p~~~~~- 160 (653)
.+.++.++|++..+..|...+ . .....+|+|+||||||||++++.+++.+.... ......+||.+.....
T Consensus 15 ~~~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 94 (387)
T 2v1u_A 15 DYVPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYR 94 (387)
T ss_dssp TCCCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHH
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHH
Confidence 345588999999988885433 1 23456799999999999999999999873210 1223344553221000
Q ss_pred ccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccc-cCceEEecccccCCHH
Q 006254 161 WEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA-HRGVLYIDEINLLDEG 239 (653)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A-~~giL~IDEi~~l~~~ 239 (653)
++..+...+ ....+ ..+.+...++.. + . ..+... ...+|||||++.+...
T Consensus 95 ~~~~l~~~l-----------~~~~~----~~~~~~~~~~~~------l-------~-~~l~~~~~~~vlilDEi~~l~~~ 145 (387)
T 2v1u_A 95 VASAIAEAV-----------GVRVP----FTGLSVGEVYER------L-------V-KRLSRLRGIYIIVLDEIDFLPKR 145 (387)
T ss_dssp HHHHHHHHH-----------SCCCC----SSCCCHHHHHHH------H-------H-HHHTTSCSEEEEEEETTTHHHHS
T ss_pred HHHHHHHHh-----------CCCCC----CCCCCHHHHHHH------H-------H-HHHhccCCeEEEEEccHhhhccc
Confidence 000000000 00000 000000000100 0 0 001111 1349999999999876
Q ss_pred --HHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCC--CcccHHHHhhhcc-cccccCCCCHhhHHHHHHHHHHH
Q 006254 240 --ISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE--GVVREHLLDRIAI-NLSADLPMTFEDRVAAVGIATQF 314 (653)
Q Consensus 240 --~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e--g~l~~aLldRf~~-~v~l~~p~~~~~r~~I~~~~~~~ 314 (653)
.++.|..++...... ..+.++.+|+++|..+ ..+.+.+++||.. .+.++ |++.++..+|+....
T Consensus 146 ~~~~~~l~~l~~~~~~~--------~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~-~l~~~~~~~il~~~~-- 214 (387)
T 2v1u_A 146 PGGQDLLYRITRINQEL--------GDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFP-PYTAPQLRDILETRA-- 214 (387)
T ss_dssp TTHHHHHHHHHHGGGCC-------------CEEEEECSCSTTSSSSCHHHHTTTTSEECCBC-CCCHHHHHHHHHHHH--
T ss_pred CCCChHHHhHhhchhhc--------CCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeC-CCCHHHHHHHHHHHH--
Confidence 777777777643210 0034678999999543 5789999999976 66776 678777777765321
Q ss_pred HhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHH
Q 006254 315 QERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDD 394 (653)
Q Consensus 315 ~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eD 394 (653)
...+....+++++++.++++++.... ..|..+.+++.|..+|...+...|+.+|
T Consensus 215 -------------------------~~~~~~~~~~~~~~~~l~~~~~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~ 268 (387)
T 2v1u_A 215 -------------------------EEAFNPGVLDPDVVPLCAALAAREHG-DARRALDLLRVAGEIAERRREERVRREH 268 (387)
T ss_dssp -------------------------HHHBCTTTBCSSHHHHHHHHHHSSSC-CHHHHHHHHHHHHHHHHHTTCSCBCHHH
T ss_pred -------------------------HhhccCCCCCHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHcCCCCcCHHH
Confidence 11123457888999999999885433 4799999999999899888999999999
Q ss_pred HHHHHHHH
Q 006254 395 LKKAVELV 402 (653)
Q Consensus 395 v~~A~~lv 402 (653)
+..|+..+
T Consensus 269 v~~a~~~~ 276 (387)
T 2v1u_A 269 VYSARAEI 276 (387)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998765
No 59
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.55 E-value=1.3e-14 Score=151.76 Aligned_cols=215 Identities=19% Similarity=0.178 Sum_probs=136.5
Q ss_pred cCCCCCCCCceechHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccccc
Q 006254 87 YGRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLD 166 (653)
Q Consensus 87 ~~~~~~~f~~IvGq~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~ 166 (653)
.+.++..|++++|++.++..|...+......++||+||+|||||++|+++++.+....
T Consensus 17 ~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~---------------------- 74 (327)
T 1iqp_A 17 EKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGEN---------------------- 74 (327)
T ss_dssp HHTCCCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGG----------------------
T ss_pred hccCCCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCc----------------------
Confidence 3567888999999999999886544444455799999999999999999999763100
Q ss_pred ccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHHH
Q 006254 167 EKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLN 246 (653)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~ 246 (653)
....++.+..... .|.-.+...+.. ....+.+..+++++|||||++.++...++.|+.
T Consensus 75 ---------------~~~~~~~~~~~~~----~~~~~~~~~~~~---~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~ 132 (327)
T 1iqp_A 75 ---------------WRHNFLELNASDE----RGINVIREKVKE---FARTKPIGGASFKIIFLDEADALTQDAQQALRR 132 (327)
T ss_dssp ---------------HHHHEEEEETTCH----HHHHTTHHHHHH---HHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHH
T ss_pred ---------------ccCceEEeecccc----CchHHHHHHHHH---HHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHH
Confidence 0112333322110 010000000000 001222333567899999999999999999999
Q ss_pred HHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhhh
Q 006254 247 VLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVE 326 (653)
Q Consensus 247 ~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~ 326 (653)
.+++.. .++.+|.++| ....+.+++.+||.. +.+. |++.++..+++...
T Consensus 133 ~le~~~-------------~~~~~i~~~~-~~~~l~~~l~sr~~~-~~~~-~l~~~~~~~~l~~~--------------- 181 (327)
T 1iqp_A 133 TMEMFS-------------SNVRFILSCN-YSSKIIEPIQSRCAI-FRFR-PLRDEDIAKRLRYI--------------- 181 (327)
T ss_dssp HHHHTT-------------TTEEEEEEES-CGGGSCHHHHHTEEE-EECC-CCCHHHHHHHHHHH---------------
T ss_pred HHHhcC-------------CCCeEEEEeC-CccccCHHHHhhCcE-EEec-CCCHHHHHHHHHHH---------------
Confidence 998753 2456788888 455688999999984 4776 55665554443311
Q ss_pred hhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHH
Q 006254 327 EETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (653)
Q Consensus 327 ~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~ 399 (653)
. ....+.+++++++.|++.+ .+ +.|..+.+++.+.. ....|+.++|..+.
T Consensus 182 ----------~----~~~~~~~~~~~~~~l~~~~-~g---~~r~~~~~l~~~~~-----~~~~i~~~~v~~~~ 231 (327)
T 1iqp_A 182 ----------A----ENEGLELTEEGLQAILYIA-EG---DMRRAINILQAAAA-----LDKKITDENVFMVA 231 (327)
T ss_dssp ----------H----HTTTCEECHHHHHHHHHHH-TT---CHHHHHHHHHHHHT-----TCSEECHHHHHHHT
T ss_pred ----------H----HhcCCCCCHHHHHHHHHHC-CC---CHHHHHHHHHHHHh-----cCCCCCHHHHHHHH
Confidence 0 0124568999999998876 22 57888888765432 22356666665543
No 60
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.55 E-value=1.8e-15 Score=176.20 Aligned_cols=157 Identities=18% Similarity=0.214 Sum_probs=113.6
Q ss_pred CCCCCCCceechHHHHHHHHHh----cccC---------CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCC
Q 006254 89 RQFFPLAAVVGQDAIKTALLLG----AIDR---------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADP 155 (653)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~~~----av~p---------~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p 155 (653)
.+.+.|++|.|.+..++.|... +..| ...||||+||||||||++||+|++.+
T Consensus 198 ~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el--------------- 262 (806)
T 3cf2_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET--------------- 262 (806)
T ss_dssp SSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT---------------
T ss_pred CCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh---------------
Confidence 3467899999999888877322 2233 13579999999999999999999976
Q ss_pred CCCCcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccc---cCceEEecc
Q 006254 156 TCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDE 232 (653)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~IDE 232 (653)
+.+|+.+......+.+.|.. ++.+ ..+|..| .++||||||
T Consensus 263 ---------------------------g~~~~~v~~~~l~sk~~ges--e~~l--------r~lF~~A~~~~PsIIfIDE 305 (806)
T 3cf2_A 263 ---------------------------GAFFFLINGPEIMSKLAGES--ESNL--------RKAFEEAEKNAPAIIFIDE 305 (806)
T ss_dssp ---------------------------TCEEEEEEHHHHHSSCTTHH--HHHH--------HHHHHHHTTSCSEEEEEES
T ss_pred ---------------------------CCeEEEEEhHHhhcccchHH--HHHH--------HHHHHHHHHcCCeEEEEeh
Confidence 35677665554445555531 1111 1233333 367999999
Q ss_pred cccCC-----------HHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHh--hhcccccccCCC
Q 006254 233 INLLD-----------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPM 299 (653)
Q Consensus 233 i~~l~-----------~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLld--Rf~~~v~l~~p~ 299 (653)
|+.+- ..+++.|+..|+.-. . ..++++||||| ....++++|++ ||+..|+++. |
T Consensus 306 iDal~~~r~~~~~~~~~riv~~LL~~mdg~~---~--------~~~V~VIaaTN-~~d~LD~ALrR~GRFd~~I~i~~-P 372 (806)
T 3cf2_A 306 LDAIAPKREKTHGEVERRIVSQLLTLMDGLK---Q--------RAHVIVMAATN-RPNSIDPALRRFGRFDREVDIGI-P 372 (806)
T ss_dssp GGGTCCTTTTCCCTTHHHHHHHHHTHHHHCC---G--------GGCEEEEEECS-STTTSCTTTTSTTSSCEEEECCC-C
T ss_pred hcccccccCCCCChHHHHHHHHHHHHHhccc---c--------cCCEEEEEecC-ChhhcCHHHhCCcccceEEecCC-C
Confidence 99874 246788888887532 1 12578999999 77889999998 9999999995 5
Q ss_pred CHhhHHHHHHH
Q 006254 300 TFEDRVAAVGI 310 (653)
Q Consensus 300 ~~~~r~~I~~~ 310 (653)
+.+.|.+|++.
T Consensus 373 d~~~R~~IL~~ 383 (806)
T 3cf2_A 373 DATGRLEILQI 383 (806)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 99999999863
No 61
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.54 E-value=1.2e-14 Score=150.11 Aligned_cols=157 Identities=19% Similarity=0.268 Sum_probs=100.3
Q ss_pred CCCCCCCceechHHHHHHHHHhcccC-------------CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCC
Q 006254 89 RQFFPLAAVVGQDAIKTALLLGAIDR-------------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADP 155 (653)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~~~av~p-------------~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p 155 (653)
.+.+.|++|.|.+.+|+.|....+.| ...||+|+||||||||+++++|+..++
T Consensus 4 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~-------------- 69 (274)
T 2x8a_A 4 VPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESG-------------- 69 (274)
T ss_dssp --------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTT--------------
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcC--------------
Confidence 35678999999999999885433221 135699999999999999999999875
Q ss_pred CCCCcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccc---cCceEEecc
Q 006254 156 TCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDE 232 (653)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~IDE 232 (653)
.+++.+......+.+.|.. ++.+ .-++..+ ...++|+||
T Consensus 70 ----------------------------~~~i~i~g~~l~~~~~~~~--~~~i--------~~vf~~a~~~~p~i~~~De 111 (274)
T 2x8a_A 70 ----------------------------LNFISVKGPELLNMYVGES--ERAV--------RQVFQRAKNSAPCVIFFDE 111 (274)
T ss_dssp ----------------------------CEEEEEETTTTCSSTTHHH--HHHH--------HHHHHHHHHTCSEEEEEET
T ss_pred ----------------------------CCEEEEEcHHHHhhhhhHH--HHHH--------HHHHHHHHhcCCCeEeeeh
Confidence 1233333222222222211 0110 0112221 356999999
Q ss_pred cccCC-----------HHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHh--hhcccccccCCC
Q 006254 233 INLLD-----------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPM 299 (653)
Q Consensus 233 i~~l~-----------~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLld--Rf~~~v~l~~p~ 299 (653)
|+.+. ..+.+.++..|+.|.- ...+++++++| .+..|++++++ ||+..|.++. +
T Consensus 112 id~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~-----------~~~~i~ia~tn-~p~~LD~al~r~gRfd~~i~~~~-P 178 (274)
T 2x8a_A 112 VDALCPRRSDRETGASVRVVNQLLTEMDGLEA-----------RQQVFIMAATN-RPDIIDPAILRPGRLDKTLFVGL-P 178 (274)
T ss_dssp CTTTCC---------CTTHHHHHHHHHHTCCS-----------TTCEEEEEEES-CGGGSCHHHHSTTSSCEEEECCS-C
T ss_pred hhhhhcccCCCcchHHHHHHHHHHHhhhcccc-----------cCCEEEEeecC-ChhhCCHhhcCcccCCeEEEeCC-c
Confidence 98752 2456778888876541 11357889999 77889999998 9999999995 5
Q ss_pred CHhhHHHHHHH
Q 006254 300 TFEDRVAAVGI 310 (653)
Q Consensus 300 ~~~~r~~I~~~ 310 (653)
+.++|.+|++.
T Consensus 179 ~~~~r~~il~~ 189 (274)
T 2x8a_A 179 PPADRLAILKT 189 (274)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 89999999874
No 62
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.53 E-value=1.2e-14 Score=153.24 Aligned_cols=218 Identities=14% Similarity=0.149 Sum_probs=134.0
Q ss_pred CCCCCCcee-ch--HHHHHHHHHhcccC--CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccc
Q 006254 90 QFFPLAAVV-GQ--DAIKTALLLGAIDR--EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDG 164 (653)
Q Consensus 90 ~~~~f~~Iv-Gq--~~~k~aL~~~av~p--~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~ 164 (653)
+.++|++++ |+ ..+..++...+-.| ...+++|+||||||||++|+++++.+..
T Consensus 6 ~~~~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~---------------------- 63 (324)
T 1l8q_A 6 PKYTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKK---------------------- 63 (324)
T ss_dssp TTCCSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHH----------------------
T ss_pred CCCCcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHH----------------------
Confidence 467899987 54 34455554444445 3468999999999999999999997731
Q ss_pred ccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCC-ccccccccccccCceEEecccccCCH--HHH
Q 006254 165 LDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGT-TVFQPGLLAEAHRGVLYIDEINLLDE--GIS 241 (653)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~-~~~~~Gll~~A~~giL~IDEi~~l~~--~~~ 241 (653)
.+.+++.++.......+.+.+ ..+. ..+.. ...+.++||||||+.++. ..+
T Consensus 64 -----------------~~~~~~~i~~~~~~~~~~~~~------~~~~~~~~~~---~~~~~~vL~iDEi~~l~~~~~~~ 117 (324)
T 1l8q_A 64 -----------------RGYRVIYSSADDFAQAMVEHL------KKGTINEFRN---MYKSVDLLLLDDVQFLSGKERTQ 117 (324)
T ss_dssp -----------------TTCCEEEEEHHHHHHHHHHHH------HHTCHHHHHH---HHHTCSEEEEECGGGGTTCHHHH
T ss_pred -----------------CCCEEEEEEHHHHHHHHHHHH------HcCcHHHHHH---HhcCCCEEEEcCcccccCChHHH
Confidence 123455444332222222221 1111 00110 012468999999999986 677
Q ss_pred HHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCC--CcccHHHHhhhc--ccccccCCCCHhhHHHHHHHHHHHHhh
Q 006254 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE--GVVREHLLDRIA--INLSADLPMTFEDRVAAVGIATQFQER 317 (653)
Q Consensus 242 ~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e--g~l~~aLldRf~--~~v~l~~p~~~~~r~~I~~~~~~~~~~ 317 (653)
+.|+..++... ..| ..++++++|+.. ..+.++|++||. ..+.+. | +.+++.+|+.....
T Consensus 118 ~~l~~~l~~~~----~~~-------~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~-~-~~~e~~~il~~~~~---- 180 (324)
T 1l8q_A 118 IEFFHIFNTLY----LLE-------KQIILASDRHPQKLDGVSDRLVSRFEGGILVEIE-L-DNKTRFKIIKEKLK---- 180 (324)
T ss_dssp HHHHHHHHHHH----HTT-------CEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECC-C-CHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHH----HCC-------CeEEEEecCChHHHHHhhhHhhhcccCceEEEeC-C-CHHHHHHHHHHHHH----
Confidence 77777765321 001 124555544322 268999999996 556776 6 88888877663211
Q ss_pred hhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH--HH--HcCCCCc-cH
Q 006254 318 SNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCL--AA--LEGREKV-NV 392 (653)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~--Aa--l~gr~~V-t~ 392 (653)
...+.++++++++|+.++ + ..|....++..+.+. .+ +.+...| +.
T Consensus 181 -------------------------~~~~~l~~~~l~~l~~~~--g---~~r~l~~~l~~~~~~~~~~l~~~~~~~i~t~ 230 (324)
T 1l8q_A 181 -------------------------EFNLELRKEVIDYLLENT--K---NVREIEGKIKLIKLKGFEGLERKERKERDKL 230 (324)
T ss_dssp -------------------------HTTCCCCHHHHHHHHHHC--S---SHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred -------------------------hcCCCCCHHHHHHHHHhC--C---CHHHHHHHHHHHHHcCHHHhccccccCCCCH
Confidence 124679999999998887 3 357777777655444 00 2334468 89
Q ss_pred HHHHHHHHHH
Q 006254 393 DDLKKAVELV 402 (653)
Q Consensus 393 eDv~~A~~lv 402 (653)
++|.+++.-.
T Consensus 231 ~~i~~~~~~~ 240 (324)
T 1l8q_A 231 MQIVEFVANY 240 (324)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999888643
No 63
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.53 E-value=2.6e-14 Score=157.35 Aligned_cols=220 Identities=17% Similarity=0.190 Sum_probs=141.8
Q ss_pred CCCCCCcee-chH--HHHHHHHHhcccCC-CceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccc
Q 006254 90 QFFPLAAVV-GQD--AIKTALLLGAIDRE-IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL 165 (653)
Q Consensus 90 ~~~~f~~Iv-Gq~--~~k~aL~~~av~p~-~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~ 165 (653)
+.++|+.++ |++ .+..++...+-.|. ..+++|+||+|||||++|++|++.+...
T Consensus 100 ~~~tfd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~---------------------- 157 (440)
T 2z4s_A 100 PDYTFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQN---------------------- 157 (440)
T ss_dssp TTCSGGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHH----------------------
T ss_pred CCCChhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHh----------------------
Confidence 457898887 644 33444443344454 5689999999999999999999976310
Q ss_pred cccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCcccccccccc--c-cCceEEecccccCCH--HH
Q 006254 166 DEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAE--A-HRGVLYIDEINLLDE--GI 240 (653)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~--A-~~giL~IDEi~~l~~--~~ 240 (653)
..+.+++.++.......+.+ .+..+.. ..+.. . +..||||||++.+.. ..
T Consensus 158 ---------------~~~~~v~~v~~~~~~~~~~~------~~~~~~~----~~~~~~~~~~~~vL~IDEi~~l~~~~~~ 212 (440)
T 2z4s_A 158 ---------------EPDLRVMYITSEKFLNDLVD------SMKEGKL----NEFREKYRKKVDILLIDDVQFLIGKTGV 212 (440)
T ss_dssp ---------------CCSSCEEEEEHHHHHHHHHH------HHHTTCH----HHHHHHHTTTCSEEEEECGGGGSSCHHH
T ss_pred ---------------CCCCeEEEeeHHHHHHHHHH------HHHcccH----HHHHHHhcCCCCEEEEeCcccccCChHH
Confidence 00234444433222222222 2211110 01111 2 467999999999986 78
Q ss_pred HHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCC--CcccHHHHhhhc--ccccccCCCCHhhHHHHHHHHHHHHh
Q 006254 241 SNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE--GVVREHLLDRIA--INLSADLPMTFEDRVAAVGIATQFQE 316 (653)
Q Consensus 241 ~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e--g~l~~aLldRf~--~~v~l~~p~~~~~r~~I~~~~~~~~~ 316 (653)
++.|+..++... ..| ..+||++.|+.. ..+.+.|++||. ..+.+. |++.+++.+|+.....
T Consensus 213 q~~l~~~l~~l~----~~~-------~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~-~p~~e~r~~iL~~~~~--- 277 (440)
T 2z4s_A 213 QTELFHTFNELH----DSG-------KQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLE-PPDEETRKSIARKMLE--- 277 (440)
T ss_dssp HHHHHHHHHHHH----TTT-------CEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCC-CCCHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHH----HCC-------CeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeC-CCCHHHHHHHHHHHHH---
Confidence 888888876421 001 134454444221 248899999996 677888 5688888888763211
Q ss_pred hhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHH
Q 006254 317 RSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLK 396 (653)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~ 396 (653)
...+.++++++++|+..+ + ...|..+.+++.+.+.|...|+ .|+.++++
T Consensus 278 --------------------------~~~~~i~~e~l~~la~~~---~-gn~R~l~~~L~~~~~~a~~~~~-~It~~~~~ 326 (440)
T 2z4s_A 278 --------------------------IEHGELPEEVLNFVAENV---D-DNLRRLRGAIIKLLVYKETTGK-EVDLKEAI 326 (440)
T ss_dssp --------------------------HHTCCCCTTHHHHHHHHC---C-SCHHHHHHHHHHHHHHHHHSSS-CCCHHHHH
T ss_pred --------------------------HcCCCCCHHHHHHHHHhc---C-CCHHHHHHHHHHHHHHHHHhCC-CCCHHHHH
Confidence 124678999999888654 2 2579999999999999998886 69999999
Q ss_pred HHHHHH
Q 006254 397 KAVELV 402 (653)
Q Consensus 397 ~A~~lv 402 (653)
+++.-.
T Consensus 327 ~~l~~~ 332 (440)
T 2z4s_A 327 LLLKDF 332 (440)
T ss_dssp HHTSTT
T ss_pred HHHHHH
Confidence 988643
No 64
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.53 E-value=1.4e-13 Score=147.44 Aligned_cols=246 Identities=14% Similarity=0.101 Sum_probs=151.1
Q ss_pred CCCCCceechHHHHHHHHHhcc----cCCCc--eEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCC-Ccccc
Q 006254 91 FFPLAAVVGQDAIKTALLLGAI----DREIG--GIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCP-DEWED 163 (653)
Q Consensus 91 ~~~f~~IvGq~~~k~aL~~~av----~p~~~--gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~-~~~~~ 163 (653)
.+.++.++|++..+..|...+. ..... .++|+||+|||||++++.++..+..........+||.+... ..+..
T Consensus 13 ~~~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 92 (389)
T 1fnn_A 13 SYVPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIG 92 (389)
T ss_dssp TCCCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHH
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHH
Confidence 3445889999988877733222 12234 79999999999999999999988632112223345533211 00000
Q ss_pred cccccccccccccccccccCCCeEeCC-CCCcccceeeecchhhhhccCCcccccccccc-ccCceEEecccccCCHHHH
Q 006254 164 GLDEKAEYDTAGNLKTQIARSPFVQIP-LGVTEDRLIGSVDVEESVKTGTTVFQPGLLAE-AHRGVLYIDEINLLDEGIS 241 (653)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~fv~l~-~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~-A~~giL~IDEi~~l~~~~~ 241 (653)
.+...+ ... .+ .+.....++..+ . ..+.. ...-||||||++.++...+
T Consensus 93 ~l~~~l-------------~~~---~~~~~~~~~~~~~~l-------------~-~~l~~~~~~~vlilDE~~~l~~~~~ 142 (389)
T 1fnn_A 93 EIARSL-------------NIP---FPRRGLSRDEFLALL-------------V-EHLRERDLYMFLVLDDAFNLAPDIL 142 (389)
T ss_dssp HHHHHT-------------TCC---CCSSCCCHHHHHHHH-------------H-HHHHHTTCCEEEEEETGGGSCHHHH
T ss_pred HHHHHh-------------Ccc---CCCCCCCHHHHHHHH-------------H-HHHhhcCCeEEEEEECccccchHHH
Confidence 000000 000 00 000000111100 0 00111 1234999999999999999
Q ss_pred HHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCC--CcccHHHHhhhcc-cccccCCCCHhhHHHHHHHHHHHHhhh
Q 006254 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE--GVVREHLLDRIAI-NLSADLPMTFEDRVAAVGIATQFQERS 318 (653)
Q Consensus 242 ~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e--g~l~~aLldRf~~-~v~l~~p~~~~~r~~I~~~~~~~~~~~ 318 (653)
+.|+..++.... .+ ..++.+|+++|..+ ..+.+.+++||.. .+.+. |++.++..+++....
T Consensus 143 ~~L~~~~~~~~~----~~-----~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~-pl~~~~~~~~l~~~~------ 206 (389)
T 1fnn_A 143 STFIRLGQEADK----LG-----AFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFS-PYTKDQIFDILLDRA------ 206 (389)
T ss_dssp HHHHHHTTCHHH----HS-----SCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECC-CCBHHHHHHHHHHHH------
T ss_pred HHHHHHHHhCCC----CC-----cCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeC-CCCHHHHHHHHHHHH------
Confidence 999998864210 00 02567888888432 4578899999986 55666 667776666654221
Q ss_pred hHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhc------CCCCcchHHHHHHHHHHHHHHcCCCCccH
Q 006254 319 NEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRG------GCQGHRAELYAARVAKCLAALEGREKVNV 392 (653)
Q Consensus 319 ~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~------~i~s~R~~i~llr~Ara~Aal~gr~~Vt~ 392 (653)
........+++++++.++++++.. +. ..|..+.+++.|..+|...+...|+.
T Consensus 207 ---------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~ 264 (389)
T 1fnn_A 207 ---------------------KAGLAEGSYSEDILQMIADITGAQTPLDTNRG-DARLAIDILYRSAYAAQQNGRKHIAP 264 (389)
T ss_dssp ---------------------HHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSC-CHHHHHHHHHHHHHHHHHTTCSSCCH
T ss_pred ---------------------HhhcCCCCCCHHHHHHHHHHHhhcccCCCCCC-cHHHHHHHHHHHHHHHHHhCCCCcCH
Confidence 111123478999999999998744 23 47999999999999999889999999
Q ss_pred HHHHHHHHHHcC
Q 006254 393 DDLKKAVELVIL 404 (653)
Q Consensus 393 eDv~~A~~lvl~ 404 (653)
+||..+...+..
T Consensus 265 ~~v~~~~~~~~~ 276 (389)
T 1fnn_A 265 EDVRKSSKEVLF 276 (389)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHHHHHHhh
Confidence 999999887653
No 65
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.52 E-value=2.2e-13 Score=134.60 Aligned_cols=232 Identities=21% Similarity=0.189 Sum_probs=137.4
Q ss_pred CCCCCCCceechHHHHHHHHHhcccCC-CceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccc
Q 006254 89 RQFFPLAAVVGQDAIKTALLLGAIDRE-IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDE 167 (653)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~~~av~p~-~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~ 167 (653)
..+..|++++|++..+..|........ .+.++|+||+|||||++++.+++.+.....+ ....| ..|..|..
T Consensus 17 ~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~--~~~~~------~~~~~~~~ 88 (250)
T 1njg_A 17 WRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI--TATPC------GVCDNCRE 88 (250)
T ss_dssp TCCCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCS--CSSCC------SCSHHHHH
T ss_pred cCCccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCC--CCCCC------cccHHHHH
Confidence 456678899999999998855443322 2469999999999999999999876421000 00111 01111100
Q ss_pred cccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHHHH
Q 006254 168 KAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNV 247 (653)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~ 247 (653)
... .....++.+..... .... ++...+. .. . .......+.+|||||++.++...++.|+..
T Consensus 89 ~~~----------~~~~~~~~~~~~~~--~~~~--~~~~~~~-~~---~-~~~~~~~~~vlviDe~~~l~~~~~~~l~~~ 149 (250)
T 1njg_A 89 IEQ----------GRFVDLIEIDAASR--TKVE--DTRDLLD-NV---Q-YAPARGRFKVYLIDEVHMLSRHSFNALLKT 149 (250)
T ss_dssp HHT----------TCCSSEEEEETTCG--GGHH--HHHHHHH-SC---C-CSCSSSSSEEEEEETGGGSCHHHHHHHHHH
T ss_pred Hhc----------cCCcceEEecCccc--ccHH--HHHHHHH-Hh---h-hchhcCCceEEEEECcccccHHHHHHHHHH
Confidence 000 00011221111100 0000 0000000 00 0 000122457999999999999999999999
Q ss_pred HHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhhhh
Q 006254 248 LTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEE 327 (653)
Q Consensus 248 l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~ 327 (653)
+++. +.++.+|+++| ....+.+.+++|+. .+.+. |++.++..+++.....
T Consensus 150 l~~~-------------~~~~~~i~~t~-~~~~~~~~l~~r~~-~i~l~-~l~~~e~~~~l~~~~~-------------- 199 (250)
T 1njg_A 150 LEEP-------------PEHVKFLLATT-DPQKLPVTILSRCL-QFHLK-ALDVEQIRHQLEHILN-------------- 199 (250)
T ss_dssp HHSC-------------CTTEEEEEEES-CGGGSCHHHHTTSE-EEECC-CCCHHHHHHHHHHHHH--------------
T ss_pred HhcC-------------CCceEEEEEeC-ChHhCCHHHHHHhh-hccCC-CCCHHHHHHHHHHHHH--------------
Confidence 9863 23567888888 45677889999964 44776 5677666655442110
Q ss_pred hhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHHH
Q 006254 328 ETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (653)
Q Consensus 328 ~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~ 400 (653)
...+.++++.++.+++.+ .| ..|..+.+++.+ ...+...|+.+||++++.
T Consensus 200 ---------------~~~~~~~~~~~~~l~~~~--~G--~~~~~~~~~~~~----~~~~~~~i~~~~v~~~~~ 249 (250)
T 1njg_A 200 ---------------EEHIAHEPRALQLLARAA--EG--SLRDALSLTDQA----IASGDGQVSTQAVSAMLG 249 (250)
T ss_dssp ---------------HTTCCBCHHHHHHHHHHH--TT--CHHHHHHHHHHH----HTTTTSSBCHHHHHHHSC
T ss_pred ---------------hcCCCCCHHHHHHHHHHc--CC--CHHHHHHHHHHH----HhccCceecHHHHHHHhC
Confidence 023578899999998887 22 467777776544 334556899999998863
No 66
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.50 E-value=9.1e-14 Score=163.08 Aligned_cols=210 Identities=17% Similarity=0.129 Sum_probs=128.1
Q ss_pred CCCCCCCceechHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccccccc
Q 006254 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (653)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~ 168 (653)
.++..|+.|+|++..++.+...+..+...+|||+||||||||++|++|+..+....
T Consensus 174 ~~~~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~------------------------ 229 (758)
T 3pxi_A 174 AKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNE------------------------ 229 (758)
T ss_dssp TTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSC------------------------
T ss_pred HhhCCCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCC------------------------
Confidence 45667899999999999987666666778999999999999999999999873100
Q ss_pred ccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHHHHH
Q 006254 169 AEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVL 248 (653)
Q Consensus 169 ~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~l 248 (653)
.+....+.+|+.+.. ...+.|.. +......-+.+..+.++||||| .+.+.++.|+.+|
T Consensus 230 --------~p~~l~~~~~~~~~~---g~~~~G~~-------e~~l~~~~~~~~~~~~~iLfiD----~~~~~~~~L~~~l 287 (758)
T 3pxi_A 230 --------VPEILRDKRVMTLDM---GTKYRGEF-------EDRLKKVMDEIRQAGNIILFID----AAIDASNILKPSL 287 (758)
T ss_dssp --------SCTTTSSCCEECC--------------------CTTHHHHHHHHHTCCCCEEEEC----C--------CCCT
T ss_pred --------CChhhcCCeEEEecc---cccccchH-------HHHHHHHHHHHHhcCCEEEEEc----CchhHHHHHHHHH
Confidence 000112455665554 11222311 1111100111223457899999 5556778888888
Q ss_pred HcCceEEeeCCeeEEeecCcEEEEEecCCCC----cccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhh
Q 006254 249 TEGVNIVEREGISFKHPCKPLLIATYNPEEG----VVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKM 324 (653)
Q Consensus 249 ~~g~~~v~r~G~s~~~p~~~~lIattNp~eg----~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~ 324 (653)
+.+ .+++|++||+.+. .++++|.+||.. |.+.. ++.+++.+|++.. ...
T Consensus 288 ~~~---------------~v~~I~at~~~~~~~~~~~d~al~rRf~~-i~v~~-p~~~~~~~il~~~---~~~------- 340 (758)
T 3pxi_A 288 ARG---------------ELQCIGATTLDEYRKYIEKDAALERRFQP-IQVDQ-PSVDESIQILQGL---RDR------- 340 (758)
T ss_dssp TSS---------------SCEEEEECCTTTTHHHHTTCSHHHHSEEE-EECCC-CCHHHHHHHHHHT---TTT-------
T ss_pred hcC---------------CEEEEeCCChHHHHHHhhccHHHHhhCcE-EEeCC-CCHHHHHHHHHHH---HHH-------
Confidence 765 3689999998774 689999999965 68884 5888888887632 111
Q ss_pred hhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCC--CCcchHHHHHHHHHHHHHHcC
Q 006254 325 VEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGC--QGHRAELYAARVAKCLAALEG 386 (653)
Q Consensus 325 ~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i--~s~R~~i~llr~Ara~Aal~g 386 (653)
+ .....+.+++++++.++.++...-. ...+..+.++..|.+.+.+..
T Consensus 341 ~---------------~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~~~~~~~~ 389 (758)
T 3pxi_A 341 Y---------------EAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRS 389 (758)
T ss_dssp S---------------GGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHHT
T ss_pred H---------------HHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHHHHHHHhhc
Confidence 0 1123466777777777777765422 123556667766666665554
No 67
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.50 E-value=1.4e-13 Score=161.37 Aligned_cols=232 Identities=19% Similarity=0.204 Sum_probs=147.9
Q ss_pred CCCCCCceechHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccc
Q 006254 90 QFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKA 169 (653)
Q Consensus 90 ~~~~f~~IvGq~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~ 169 (653)
++-.|+.|+|++..++.+...+......++||+||||||||++|++++..+....
T Consensus 181 ~~~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~------------------------- 235 (758)
T 1r6b_X 181 RVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGD------------------------- 235 (758)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTC-------------------------
T ss_pred hcCCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCC-------------------------
Confidence 4567899999999988886655555678899999999999999999999763100
Q ss_pred cccccccccccccCCCeEeCCCCCcc--cceeeecchhhhhccCCccccccccccccCceEEecccccC---------CH
Q 006254 170 EYDTAGNLKTQIARSPFVQIPLGVTE--DRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLL---------DE 238 (653)
Q Consensus 170 ~~~~~~~~~~~~~~~~fv~l~~~~~~--~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l---------~~ 238 (653)
.+....+..++.+..+... ..+.|.. +..+. ..-..+..+.++||||||++.+ ..
T Consensus 236 -------v~~~~~~~~~~~~~~~~l~~~~~~~g~~--e~~l~-----~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~ 301 (758)
T 1r6b_X 236 -------VPEVMADCTIYSLDIGSLLAGTKYRGDF--EKRFK-----ALLKQLEQDTNSILFIDEIHTIIGAGAASGGQV 301 (758)
T ss_dssp -------SCGGGTTCEEEECCCC---CCCCCSSCH--HHHHH-----HHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHH
T ss_pred -------CChhhcCCEEEEEcHHHHhccccccchH--HHHHH-----HHHHHHHhcCCeEEEEechHHHhhcCCCCcchH
Confidence 0000113344444333211 1122211 11100 0001112234689999999998 33
Q ss_pred HHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCC----CcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHH
Q 006254 239 GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE----GVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQF 314 (653)
Q Consensus 239 ~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e----g~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~ 314 (653)
+.++.|..+++.+ ++.+|++||+.+ -.++++|.+||.. |.+. +++.+++.+|++.....
T Consensus 302 ~~~~~L~~~l~~~---------------~~~~I~at~~~~~~~~~~~d~aL~~Rf~~-i~v~-~p~~~e~~~il~~l~~~ 364 (758)
T 1r6b_X 302 DAANLIKPLLSSG---------------KIRVIGSTTYQEFSNIFEKDRALARRFQK-IDIT-EPSIEETVQIINGLKPK 364 (758)
T ss_dssp HHHHHHSSCSSSC---------------CCEEEEEECHHHHHCCCCCTTSSGGGEEE-EECC-CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC---------------CeEEEEEeCchHHhhhhhcCHHHHhCceE-EEcC-CCCHHHHHHHHHHHHHH
Confidence 4455565555443 467899999643 2466889999995 5888 45888888887632111
Q ss_pred HhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCC--CCcchHHHHHHHHHHHHHH----cCCC
Q 006254 315 QERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGC--QGHRAELYAARVAKCLAAL----EGRE 388 (653)
Q Consensus 315 ~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i--~s~R~~i~llr~Ara~Aal----~gr~ 388 (653)
......+.++++++..++.++...-. ......+.++..|.+.+.+ .+..
T Consensus 365 -------------------------~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i~lld~a~~~~~~~~~~~~~~ 419 (758)
T 1r6b_X 365 -------------------------YEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKK 419 (758)
T ss_dssp -------------------------HHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHHHHHSSSCCCCC
T ss_pred -------------------------HHHhcCCCCCHHHHHHHHHHhhhhcccccCchHHHHHHHHHHHHHhcccccccCC
Confidence 01123577899999999888766422 1234577777777777766 4567
Q ss_pred CccHHHHHHHHHHH
Q 006254 389 KVNVDDLKKAVELV 402 (653)
Q Consensus 389 ~Vt~eDv~~A~~lv 402 (653)
.|+.+|+..++...
T Consensus 420 ~v~~~di~~~~~~~ 433 (758)
T 1r6b_X 420 TVNVADIESVVARI 433 (758)
T ss_dssp SCCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHh
Confidence 89999999998754
No 68
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=99.49 E-value=2.8e-14 Score=142.61 Aligned_cols=92 Identities=21% Similarity=0.253 Sum_probs=82.0
Q ss_pred ccCCceEEEEEeCCCCCChhHHHHHHHHHHHHHHhH--cCCCCeEEEEEeecCC--cEEEc-CCCcCHHHHHHHHhcCCC
Q 006254 558 RKAGALVIFVVDASGSMALNRMQNAKGAALKLLAES--YTCRDQVSIIPFRGDS--AEVLL-PPSRSIAMARKRLERLPC 632 (653)
Q Consensus 558 ~~~~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~a--y~~rd~v~li~F~~~~--a~~~l-p~t~~~~~~~~~L~~l~~ 632 (653)
...+.+|+||||+||||+ .||..+|+++..|+.+. ++.+++||||+|++.. +..++ |+|.+. .+...|..|++
T Consensus 131 e~~~~~vvfLVDtSgSM~-~kl~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~~~~~~~ll~pfT~~~-~~~~~l~~L~a 208 (242)
T 3rag_A 131 DEVALHLVVCLDTSASMR-DKIPTVREAVRDLALSLKVRSGPLAVSVIAFPGKGEEATRLVQPFSSEV-NVAALEAELVA 208 (242)
T ss_dssp HHSCEEEEEEEECSGGGT-TTHHHHHHHHHHHHHHHTTSSSCEEEEEEEESCSTTCSCEEEEEEESSC-CHHHHHHHCCC
T ss_pred ccCCCCEEEEEECcccHH-HHHHHHHHHHHHHHHHHhccCCCcEEEEEEECCCCccceeecCCCCChH-HHHHHHhhCCC
Confidence 346899999999999998 69999999999999876 4568999999998764 66677 999988 88899999999
Q ss_pred CCCCchHHHHHHHHHHHhh
Q 006254 633 GGGSPLAHGLSMGWAKCGE 651 (653)
Q Consensus 633 gG~Tpl~~gl~~a~~~l~~ 651 (653)
||+|||+.||..|++++.+
T Consensus 209 gG~Tplg~AL~~A~~~~~~ 227 (242)
T 3rag_A 209 RGGTPTGPAIDHAADLLLS 227 (242)
T ss_dssp CSCCCHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHH
Confidence 9999999999999998864
No 69
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.47 E-value=1.5e-13 Score=147.19 Aligned_cols=133 Identities=17% Similarity=0.175 Sum_probs=96.8
Q ss_pred ceEEecccccCCHHH-HHH-HHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCC--CcccHHHHhhhcccccccCCCCH
Q 006254 226 GVLYIDEINLLDEGI-SNL-LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE--GVVREHLLDRIAINLSADLPMTF 301 (653)
Q Consensus 226 giL~IDEi~~l~~~~-~~~-Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e--g~l~~aLldRf~~~v~l~~p~~~ 301 (653)
.||||||++.+.... ++. |...+... .++.+|+++|..+ ..+.+.+++||+..+.++ |++.
T Consensus 135 ~vlilDEi~~l~~~~~~~~~l~~l~~~~--------------~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~-~l~~ 199 (384)
T 2qby_B 135 AIIYLDEVDTLVKRRGGDIVLYQLLRSD--------------ANISVIMISNDINVRDYMEPRVLSSLGPSVIFK-PYDA 199 (384)
T ss_dssp EEEEEETTHHHHHSTTSHHHHHHHHTSS--------------SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEEC-CCCH
T ss_pred CEEEEECHHHhccCCCCceeHHHHhcCC--------------cceEEEEEECCCchHhhhCHHHHhcCCCeEEEC-CCCH
Confidence 399999999986542 444 33333321 3578999999543 568899999998888887 6787
Q ss_pred hhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH
Q 006254 302 EDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCL 381 (653)
Q Consensus 302 ~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~ 381 (653)
++..+|+.... ...+....+++++++.++++++.... ..|..+.+++.|..+
T Consensus 200 ~~~~~il~~~~---------------------------~~~~~~~~~~~~~~~~i~~~~~~~~G-~~r~a~~~l~~a~~~ 251 (384)
T 2qby_B 200 EQLKFILSKYA---------------------------EYGLIKGTYDDEILSYIAAISAKEHG-DARKAVNLLFRAAQL 251 (384)
T ss_dssp HHHHHHHHHHH---------------------------HHTSCTTSCCSHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---------------------------HhhcccCCcCHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHH
Confidence 77777765321 11233467899999999999874333 579999999888877
Q ss_pred HHHcCCCCccHHHHHHHHHHHc
Q 006254 382 AALEGREKVNVDDLKKAVELVI 403 (653)
Q Consensus 382 Aal~gr~~Vt~eDv~~A~~lvl 403 (653)
|. +...|+.+||..++..+.
T Consensus 252 a~--~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 252 AS--GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp TT--SSSCCCHHHHHHHHHHHH
T ss_pred hc--CCCccCHHHHHHHHHHHh
Confidence 76 778999999999987653
No 70
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.47 E-value=9.8e-14 Score=144.52 Aligned_cols=215 Identities=21% Similarity=0.160 Sum_probs=136.9
Q ss_pred cCCCCCCCCceechHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccccc
Q 006254 87 YGRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLD 166 (653)
Q Consensus 87 ~~~~~~~f~~IvGq~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~ 166 (653)
.+.++..|++++|++.++..|...+-.....++||+||+|||||++|+++++.+....
T Consensus 9 ~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~---------------------- 66 (319)
T 2chq_A 9 EKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGEN---------------------- 66 (319)
T ss_dssp TTTSCSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTC----------------------
T ss_pred HhcCCCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCc----------------------
Confidence 3466788999999999999887655544555799999999999999999999762100
Q ss_pred ccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHHH
Q 006254 167 EKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLN 246 (653)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~ 246 (653)
...+|+.+..... .|.-++...+... .....+....++||||||++.++...++.|+.
T Consensus 67 ---------------~~~~~~~~~~~~~----~~~~~~~~~~~~~---~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~ 124 (319)
T 2chq_A 67 ---------------WRDNFIEMNASDE----RGIDVVRHKIKEF---ARTAPIGGAPFKIIFLDEADALTADAQAALRR 124 (319)
T ss_dssp ---------------HHHHCEEEETTST----TCTTTSSHHHHHH---HHSCCSSSCCCEEEEEETGGGSCHHHHHTTGG
T ss_pred ---------------ccCCeEEEeCccc----cChHHHHHHHHHH---HhcCCCCCCCceEEEEeCCCcCCHHHHHHHHH
Confidence 0112222221110 0000000000000 00011222456799999999999999999999
Q ss_pred HHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhhh
Q 006254 247 VLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVE 326 (653)
Q Consensus 247 ~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~ 326 (653)
.+++. +.++++|+++| ....+.++|.+||. .+.+. |++.++..+++....
T Consensus 125 ~le~~-------------~~~~~~i~~~~-~~~~l~~~l~sr~~-~i~~~-~~~~~~~~~~l~~~~-------------- 174 (319)
T 2chq_A 125 TMEMY-------------SKSCRFILSCN-YVSRIIEPIQSRCA-VFRFK-PVPKEAMKKRLLEIC-------------- 174 (319)
T ss_dssp GTSSS-------------SSSEEEEEEES-CGGGSCHHHHTTCE-EEECC-CCCHHHHHHHHHHHH--------------
T ss_pred HHHhc-------------CCCCeEEEEeC-ChhhcchHHHhhCe-EEEec-CCCHHHHHHHHHHHH--------------
Confidence 88753 23567888888 55678899999997 44777 556665555543110
Q ss_pred hhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHH
Q 006254 327 EETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (653)
Q Consensus 327 ~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~ 399 (653)
....+.+++++++.|+..+ +. ..|..+.+++.+. . . ...|+.++|..++
T Consensus 175 ---------------~~~~~~i~~~~l~~l~~~~---~G-~~r~~~~~l~~~~---~-~-~~~i~~~~v~~~~ 223 (319)
T 2chq_A 175 ---------------EKEGVKITEDGLEALIYIS---GG-DFRKAINALQGAA---A-I-GEVVDADTIYQIT 223 (319)
T ss_dssp ---------------HTTCCCBCHHHHHHHHHTT---TT-CHHHHHHHHHHHH---H-S-SSCBCHHHHHHHT
T ss_pred ---------------HHcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHH---H-c-CCCCCHHHHHHHH
Confidence 1124678999998887543 22 4677777765432 2 2 3479999998774
No 71
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.46 E-value=2.4e-12 Score=137.30 Aligned_cols=232 Identities=21% Similarity=0.179 Sum_probs=137.5
Q ss_pred CCCCCCCCceechHHHHHHHHHhcccCC-CceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccccc
Q 006254 88 GRQFFPLAAVVGQDAIKTALLLGAIDRE-IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLD 166 (653)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~~~av~p~-~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~ 166 (653)
+.++..|++++|++.++..|........ .+.+||+||+|||||++|+++++.+...... ...+| ..|..|.
T Consensus 9 k~rp~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~--~~~~~------~~~~~~~ 80 (373)
T 1jr3_A 9 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI--TATPC------GVCDNCR 80 (373)
T ss_dssp HTCCCSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCS--CSSCC------SSSHHHH
T ss_pred hhCCCchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCC--CCCCC------cccHHHH
Confidence 4567789999999999988865443332 2458999999999999999999987411000 00011 1122221
Q ss_pred ccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHHH
Q 006254 167 EKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLN 246 (653)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~ 246 (653)
... .. ....++.+..... .+.-++...+..-. .. -......||||||++.++...++.|+.
T Consensus 81 ~~~---~~-------~~~~~~~~~~~~~----~~~~~~~~l~~~~~--~~---~~~~~~~vliiDe~~~l~~~~~~~Ll~ 141 (373)
T 1jr3_A 81 EIE---QG-------RFVDLIEIDAASR----TKVEDTRDLLDNVQ--YA---PARGRFKVYLIDEVHMLSRHSFNALLK 141 (373)
T ss_dssp HHH---TS-------CCSSCEEEETTCS----CCSSCHHHHHHHTT--SC---CSSSSSEEEEEECGGGSCHHHHHHHHH
T ss_pred HHh---cc-------CCCceEEeccccc----CCHHHHHHHHHHHh--hc---cccCCeEEEEEECcchhcHHHHHHHHH
Confidence 100 00 0112222211100 00000100000000 00 011235699999999999999999999
Q ss_pred HHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhhh
Q 006254 247 VLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVE 326 (653)
Q Consensus 247 ~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~ 326 (653)
.+++. +.++++|+++| ....+.+.+++|+. .+.+. |++.++..+++....
T Consensus 142 ~le~~-------------~~~~~~Il~~~-~~~~l~~~l~sr~~-~i~~~-~l~~~~~~~~l~~~~-------------- 191 (373)
T 1jr3_A 142 TLEEP-------------PEHVKFLLATT-DPQKLPVTILSRCL-QFHLK-ALDVEQIRHQLEHIL-------------- 191 (373)
T ss_dssp HHHSC-------------CSSEEEEEEES-CGGGSCHHHHTTSE-EEECC-CCCHHHHHHHHHHHH--------------
T ss_pred HHhcC-------------CCceEEEEEeC-ChHhCcHHHHhhee-EeeCC-CCCHHHHHHHHHHHH--------------
Confidence 99863 33567888888 55678899999984 44777 556666555544210
Q ss_pred hhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHH
Q 006254 327 EETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (653)
Q Consensus 327 ~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~ 399 (653)
. ...+.+++++++.+++.+ +. ..|..+.+++.+. . .+...|+.+||..++
T Consensus 192 -----------~----~~~~~~~~~a~~~l~~~~---~G-~~r~~~~~l~~~~---~-~~~~~i~~~~v~~~~ 241 (373)
T 1jr3_A 192 -----------N----EEHIAHEPRALQLLARAA---EG-SLRDALSLTDQAI---A-SGDGQVSTQAVSAML 241 (373)
T ss_dssp -----------H----HHTCCBCHHHHHHHHHHS---SS-CHHHHHHHHHHHH---H-HTTTCBCHHHHHHHT
T ss_pred -----------H----HcCCCCCHHHHHHHHHHC---CC-CHHHHHHHHHHHH---H-hcCCcccHHHHHHHh
Confidence 0 024678999988888765 22 4777777765442 2 234679999998776
No 72
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.45 E-value=3.4e-14 Score=148.04 Aligned_cols=137 Identities=19% Similarity=0.215 Sum_probs=86.8
Q ss_pred CceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeEeCCCCCcc
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTE 195 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~ 195 (653)
..+|||+||||||||++|++|++.+. .+|+.++.+...
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~------------------------------------------~~~i~v~~~~l~ 73 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMG------------------------------------------INPIMMSAGELE 73 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHT------------------------------------------CCCEEEEHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC------------------------------------------CCEEEEeHHHhh
Confidence 35799999999999999999999873 566666655444
Q ss_pred cceeeecchhhhhccCCccccccccccc-------cCceEEecccccCCH-------------HHHHHHHHHHHcCceEE
Q 006254 196 DRLIGSVDVEESVKTGTTVFQPGLLAEA-------HRGVLYIDEINLLDE-------------GISNLLLNVLTEGVNIV 255 (653)
Q Consensus 196 ~~l~G~~d~~~~~~~g~~~~~~Gll~~A-------~~giL~IDEi~~l~~-------------~~~~~Ll~~l~~g~~~v 255 (653)
+.++|.. +..+ ...+..| .++|||||||+.+.. .+++.|+.+|+......
T Consensus 74 ~~~~g~~--~~~i--------~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~ 143 (293)
T 3t15_A 74 SGNAGEP--AKLI--------RQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQ 143 (293)
T ss_dssp CC---HH--HHHH--------HHHHHHHHHHHTTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC---
T ss_pred hccCchh--HHHH--------HHHHHHHHHHHhcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccc
Confidence 5555532 1111 1123223 578999999987644 46699999998554221
Q ss_pred eeCCe-eEEeecCcEEEEEecCCCCcccHHHHh--hhcccccccCCCCHhhHHHHHH
Q 006254 256 EREGI-SFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPMTFEDRVAAVG 309 (653)
Q Consensus 256 ~r~G~-s~~~p~~~~lIattNp~eg~l~~aLld--Rf~~~v~l~~p~~~~~r~~I~~ 309 (653)
. +|. ......++++|+||| ....++++|++ ||+.++.+ | +.++|.+|++
T Consensus 144 ~-~~~~~~~~~~~v~vI~ttN-~~~~ld~al~R~~R~d~~i~~--P-~~~~r~~Il~ 195 (293)
T 3t15_A 144 L-PGMYNKQENARVPIIVTGN-DFSTLYAPLIRDGRMEKFYWA--P-TREDRIGVCT 195 (293)
T ss_dssp ---------CCCCCCEEEECS-SCCC--CHHHHHHHEEEEEEC--C-CHHHHHHHHH
T ss_pred c-ccccccccCCCcEEEEecC-CcccCCHHHhCCCCCceeEeC--c-CHHHHHHHHH
Confidence 1 111 122334689999999 67788899995 89887653 5 8999999876
No 73
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.45 E-value=7.9e-13 Score=140.91 Aligned_cols=242 Identities=16% Similarity=0.090 Sum_probs=147.3
Q ss_pred CCCCCceechHHHHHHHHHhcc----cCCCceEEEECCCCCHHHHHHHHHHhhCCCCe--eeccccccCCCCCC-Ccccc
Q 006254 91 FFPLAAVVGQDAIKTALLLGAI----DREIGGIAISGRRGTAKTVMARGLHAILPPIE--VVVGSIANADPTCP-DEWED 163 (653)
Q Consensus 91 ~~~f~~IvGq~~~k~aL~~~av----~p~~~gVLL~GppGTGKT~lArala~~l~~~~--~v~~~~~nc~p~~~-~~~~~ 163 (653)
.+.++.++|++..+..|...+. ......|+|+||+|||||++++.+++.+.... ......++|..... .....
T Consensus 16 ~~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 95 (386)
T 2qby_A 16 DYIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLA 95 (386)
T ss_dssp SCCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHH
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHH
Confidence 3455889999998888854332 23456799999999999999999999763100 01122233311000 00000
Q ss_pred cccccccccccccccccccCCCeEeCC-CCCcccceeeecchhhhhccCCccccccccccc-cCceEEecccccCC----
Q 006254 164 GLDEKAEYDTAGNLKTQIARSPFVQIP-LGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA-HRGVLYIDEINLLD---- 237 (653)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~fv~l~-~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A-~~giL~IDEi~~l~---- 237 (653)
.+ ...... ..+ .+.+...++.. + ...+... .+.||+|||++.+.
T Consensus 96 ~i---------------~~~l~~-~~~~~~~~~~~~~~~------l--------~~~l~~~~~~~vlilDE~~~l~~~~~ 145 (386)
T 2qby_A 96 DL---------------LESLDV-KVPFTGLSIAELYRR------L--------VKAVRDYGSQVVIVLDEIDAFVKKYN 145 (386)
T ss_dssp HH---------------TTTTSC-CCCSSSCCHHHHHHH------H--------HHHHHTCCSCEEEEEETHHHHHHSSC
T ss_pred HH---------------HHHhCC-CCCCCCCCHHHHHHH------H--------HHHHhccCCeEEEEEcChhhhhccCc
Confidence 00 000000 000 00000000000 0 0011111 14589999999885
Q ss_pred HHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCC--CcccHHHHhhhcc-cccccCCCCHhhHHHHHHHHHHH
Q 006254 238 EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE--GVVREHLLDRIAI-NLSADLPMTFEDRVAAVGIATQF 314 (653)
Q Consensus 238 ~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e--g~l~~aLldRf~~-~v~l~~p~~~~~r~~I~~~~~~~ 314 (653)
...+..|+..++... ..++.+|+++|..+ ..+.+.+.+||.. .+.+. |++.++..+++....
T Consensus 146 ~~~l~~l~~~~~~~~------------~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~-~l~~~~~~~il~~~~-- 210 (386)
T 2qby_A 146 DDILYKLSRINSEVN------------KSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFP-PYNAEELEDILTKRA-- 210 (386)
T ss_dssp STHHHHHHHHHHSCC------------C--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEEC-CCCHHHHHHHHHHHH--
T ss_pred CHHHHHHhhchhhcC------------CCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeC-CCCHHHHHHHHHHHH--
Confidence 567778888776431 12467888888443 4577889999964 56776 677777776665321
Q ss_pred HhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHH
Q 006254 315 QERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDD 394 (653)
Q Consensus 315 ~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eD 394 (653)
........+++++++++++++...+. ..|..+.+++.+..+|...+...|+.+|
T Consensus 211 -------------------------~~~~~~~~~~~~~~~~l~~~~~~~~G-~~r~~~~ll~~a~~~a~~~~~~~i~~~~ 264 (386)
T 2qby_A 211 -------------------------QMAFKPGVLPDNVIKLCAALAAREHG-DARRALDLLRVSGEIAERMKDTKVKEEY 264 (386)
T ss_dssp -------------------------HHHBCSSCSCHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHTTCSSCCHHH
T ss_pred -------------------------HhhccCCCCCHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhcCCCccCHHH
Confidence 11223457899999999998875322 4788999999998888888999999999
Q ss_pred HHHHHHHHc
Q 006254 395 LKKAVELVI 403 (653)
Q Consensus 395 v~~A~~lvl 403 (653)
+..|+..+.
T Consensus 265 v~~a~~~~~ 273 (386)
T 2qby_A 265 VYMAKEEIE 273 (386)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999987664
No 74
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.44 E-value=7.8e-13 Score=148.45 Aligned_cols=216 Identities=11% Similarity=0.070 Sum_probs=127.6
Q ss_pred CCCCCCCCceechHHHHHHHHHhccc-----------------CCCceEEEECCCCCHHHHHHHHHHhhCCCCeeecccc
Q 006254 88 GRQFFPLAAVVGQDAIKTALLLGAID-----------------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSI 150 (653)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~~~av~-----------------p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~ 150 (653)
+.+|..|++|+|++..++.|...+.. +...++||+||||||||++|+++++.+.
T Consensus 32 kyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~--------- 102 (516)
T 1sxj_A 32 KYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG--------- 102 (516)
T ss_dssp HTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT---------
T ss_pred ccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC---------
Confidence 56788899999999998888433221 1236899999999999999999999874
Q ss_pred ccCCCCCCCcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhh--------hhccCCcccccccccc
Q 006254 151 ANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEE--------SVKTGTTVFQPGLLAE 222 (653)
Q Consensus 151 ~nc~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~--------~~~~g~~~~~~Gll~~ 222 (653)
.+++.+.........++.-.+.. .++.... ..+...
T Consensus 103 ---------------------------------~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~ 146 (516)
T 1sxj_A 103 ---------------------------------YDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNE---EAQNLN 146 (516)
T ss_dssp ---------------------------------CEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC-------CCSS
T ss_pred ---------------------------------CCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhh---hhhhcc
Confidence 12222222111110000000000 0000000 011123
Q ss_pred ccCceEEecccccCCHHH---HHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCC
Q 006254 223 AHRGVLYIDEINLLDEGI---SNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPM 299 (653)
Q Consensus 223 A~~giL~IDEi~~l~~~~---~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~ 299 (653)
..+.|||||||+.++... ++.|+..++... ..+++|+++. ....++ .| +|+...+.+. ++
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~~-------------~~iIli~~~~-~~~~l~-~l-~~r~~~i~f~-~~ 209 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTS-------------TPLILICNER-NLPKMR-PF-DRVCLDIQFR-RP 209 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHHCS-------------SCEEEEESCT-TSSTTG-GG-TTTSEEEECC-CC
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHhcC-------------CCEEEEEcCC-CCccch-hh-HhceEEEEeC-CC
Confidence 456799999999997643 478888887643 1233433322 334444 34 4555566887 56
Q ss_pred CHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 006254 300 TFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAK 379 (653)
Q Consensus 300 ~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ar 379 (653)
+.+++.+++..... ...+.+++++++.|++.+ +. ..|..+.+++.+.
T Consensus 210 ~~~~~~~~L~~i~~-----------------------------~~~~~i~~~~l~~la~~s---~G-diR~~i~~L~~~~ 256 (516)
T 1sxj_A 210 DANSIKSRLMTIAI-----------------------------REKFKLDPNVIDRLIQTT---RG-DIRQVINLLSTIS 256 (516)
T ss_dssp CHHHHHHHHHHHHH-----------------------------HHTCCCCTTHHHHHHHHT---TT-CHHHHHHHHTHHH
T ss_pred CHHHHHHHHHHHHH-----------------------------HcCCCCCHHHHHHHHHHc---CC-cHHHHHHHHHHHH
Confidence 77776666542110 113568899999888775 22 4788888875442
Q ss_pred HHHHHcCCCCccHHHHHHHHHHHc
Q 006254 380 CLAALEGREKVNVDDLKKAVELVI 403 (653)
Q Consensus 380 a~Aal~gr~~Vt~eDv~~A~~lvl 403 (653)
. +...|+.+++.+++....
T Consensus 257 ----~-~~~~It~~~v~~~~~~~~ 275 (516)
T 1sxj_A 257 ----T-TTKTINHENINEISKAWE 275 (516)
T ss_dssp ----H-HSSCCCTTHHHHHHHHHH
T ss_pred ----h-cCCCCchHHHHHHHHhhc
Confidence 2 456799999988876443
No 75
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=99.44 E-value=1.8e-13 Score=132.59 Aligned_cols=94 Identities=47% Similarity=0.797 Sum_probs=85.3
Q ss_pred ccCCceEEEEEeCCCCCChhHHHHHHHHHHHHHHhHcCCCCeEEEEEeecCCcEEEcCCCcCHHHHHHHHhcCCCCCCCc
Q 006254 558 RKAGALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPCGGGSP 637 (653)
Q Consensus 558 ~~~~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~ay~~rd~v~li~F~~~~a~~~lp~t~~~~~~~~~L~~l~~gG~Tp 637 (653)
++.+..++||||+||||.++|+..+|.++..++...+..+|+|+||+|++..+.+++|+|.+...+...|..+.++|+|+
T Consensus 2 ~~~~~~vv~vlD~SgSM~~~~~~~~k~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~~~~~~~~~~~~~~i~~l~~~g~T~ 81 (189)
T 2x31_A 2 EMSDRVLIFAVDASGSAAVARLSEAKGAVELLLGRAYAARDHVSLITFRGTAAQVLLQPSRSLTQTKRQLQGLPGGGGTP 81 (189)
T ss_dssp CSSCCEEEEEEECCTTSCC--CHHHHHHHHHHHHHSCTTTSCCCEEEESBSCCCBCTTTCSCHHHHHHHHHHCCCCBCCC
T ss_pred CCCCeEEEEEEECCCCCCchHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCCceEecCCCCCHHHHHHHHhcCCCCCCCC
Confidence 45689999999999999889999999999999977779999999999987678899999999999999999999999999
Q ss_pred hHHHHHHHHHHHhh
Q 006254 638 LAHGLSMGWAKCGE 651 (653)
Q Consensus 638 l~~gl~~a~~~l~~ 651 (653)
+..||..|++.+.+
T Consensus 82 ~~~al~~a~~~l~~ 95 (189)
T 2x31_A 82 LASGMEMAMVTAKQ 95 (189)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998875
No 76
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.42 E-value=1.9e-12 Score=135.01 Aligned_cols=216 Identities=19% Similarity=0.157 Sum_probs=137.9
Q ss_pred CCCCCCCCceechHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccc
Q 006254 88 GRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDE 167 (653)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~ 167 (653)
+.++..|++++|++..+..|...+......++||+||+|||||++|+.+++.+....
T Consensus 14 ~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~----------------------- 70 (323)
T 1sxj_B 14 KYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRS----------------------- 70 (323)
T ss_dssp HTCCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGG-----------------------
T ss_pred hcCCCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCc-----------------------
Confidence 456778999999999999886654444445699999999999999999999762000
Q ss_pred cccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHHHH
Q 006254 168 KAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNV 247 (653)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~ 247 (653)
....++.+..... .|.-.+...+.. ... ....+......||||||++.++...++.|+..
T Consensus 71 --------------~~~~~~~~~~~~~----~~~~~i~~~~~~-~~~-~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~ 130 (323)
T 1sxj_B 71 --------------YADGVLELNASDD----RGIDVVRNQIKH-FAQ-KKLHLPPGKHKIVILDEADSMTAGAQQALRRT 130 (323)
T ss_dssp --------------HHHHEEEECTTSC----CSHHHHHTHHHH-HHH-BCCCCCTTCCEEEEEESGGGSCHHHHHTTHHH
T ss_pred --------------ccCCEEEecCccc----cChHHHHHHHHH-HHh-ccccCCCCCceEEEEECcccCCHHHHHHHHHH
Confidence 0112333322210 010001000000 000 00011122357999999999999999999999
Q ss_pred HHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhhhhh
Q 006254 248 LTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEE 327 (653)
Q Consensus 248 l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~~~~ 327 (653)
+++.. .++.+|.++| ....+.+.+.+|+. .+.+. |++.++..+++....
T Consensus 131 le~~~-------------~~~~~il~~~-~~~~l~~~l~sr~~-~i~~~-~~~~~~~~~~l~~~~--------------- 179 (323)
T 1sxj_B 131 MELYS-------------NSTRFAFACN-QSNKIIEPLQSQCA-ILRYS-KLSDEDVLKRLLQII--------------- 179 (323)
T ss_dssp HHHTT-------------TTEEEEEEES-CGGGSCHHHHTTSE-EEECC-CCCHHHHHHHHHHHH---------------
T ss_pred HhccC-------------CCceEEEEeC-ChhhchhHHHhhce-EEeec-CCCHHHHHHHHHHHH---------------
Confidence 98742 2457788888 45677899999987 44777 567766665554211
Q ss_pred hhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHHH
Q 006254 328 ETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (653)
Q Consensus 328 ~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~ 400 (653)
. ...+.+++++++.+++++ +. ..|..+.+++.+. .. ...|+.++|..++.
T Consensus 180 ------------~--~~~~~~~~~~~~~l~~~~---~G-~~r~a~~~l~~~~---~~--~~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 180 ------------K--LEDVKYTNDGLEAIIFTA---EG-DMRQAINNLQSTV---AG--HGLVNADNVFKIVD 229 (323)
T ss_dssp ------------H--HHTCCBCHHHHHHHHHHH---TT-CHHHHHHHHHHHH---HH--HSSBCHHHHHHHHT
T ss_pred ------------H--HcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHH---hc--CCCcCHHHHHHHHC
Confidence 0 023568999999998877 22 4787787775543 11 24799999988764
No 77
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.39 E-value=1.4e-13 Score=141.39 Aligned_cols=205 Identities=14% Similarity=0.187 Sum_probs=116.5
Q ss_pred CCceechHHHHHHHH------Hhcc----cCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccc
Q 006254 94 LAAVVGQDAIKTALL------LGAI----DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWED 163 (653)
Q Consensus 94 f~~IvGq~~~k~aL~------~~av----~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~ 163 (653)
...++|++.....+. ...+ .+...+|||+||||||||++|++++..+.
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~---------------------- 89 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN---------------------- 89 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT----------------------
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC----------------------
Confidence 456777765544331 1122 34557899999999999999999999753
Q ss_pred cccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCcccccccccc---ccCceEEecccccC----
Q 006254 164 GLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAE---AHRGVLYIDEINLL---- 236 (653)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~---A~~giL~IDEi~~l---- 236 (653)
.+|+.+... +.++|...... .+ ....++.. ..++|||||||+.+
T Consensus 90 --------------------~~~~~i~~~---~~~~g~~~~~~---~~---~~~~~~~~~~~~~~~vl~iDEid~l~~~~ 140 (272)
T 1d2n_A 90 --------------------FPFIKICSP---DKMIGFSETAK---CQ---AMKKIFDDAYKSQLSCVVVDDIERLLDYV 140 (272)
T ss_dssp --------------------CSEEEEECG---GGCTTCCHHHH---HH---HHHHHHHHHHTSSEEEEEECCHHHHTTCB
T ss_pred --------------------CCEEEEeCH---HHhcCCchHHH---HH---HHHHHHHHHHhcCCcEEEEEChhhhhccC
Confidence 445544322 23444211000 00 00112222 34689999999987
Q ss_pred ------CHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccH-HHHhhhcccccccCCCCHhhHHHHHH
Q 006254 237 ------DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVRE-HLLDRIAINLSADLPMTFEDRVAAVG 309 (653)
Q Consensus 237 ------~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~-aLldRf~~~v~l~~p~~~~~r~~I~~ 309 (653)
...+++.|+..++... ..+.++++|+||| .+..+++ .+.+||...+.++ ....|.+|..
T Consensus 141 ~~~~~~~~~~l~~L~~~~~~~~----------~~~~~~~ii~ttn-~~~~l~~~~l~~rf~~~i~~p---~l~~r~~i~~ 206 (272)
T 1d2n_A 141 PIGPRFSNLVLQALLVLLKKAP----------PQGRKLLIIGTTS-RKDVLQEMEMLNAFSTTIHVP---NIATGEQLLE 206 (272)
T ss_dssp TTTTBCCHHHHHHHHHHTTCCC----------STTCEEEEEEEES-CHHHHHHTTCTTTSSEEEECC---CEEEHHHHHH
T ss_pred CCChhHHHHHHHHHHHHhcCcc----------CCCCCEEEEEecC-ChhhcchhhhhcccceEEcCC---CccHHHHHHH
Confidence 4555666666554211 0123578999999 4444555 5778998877764 2333444543
Q ss_pred HHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCC-CCcchHHHHHHHHHHHHHHcCCC
Q 006254 310 IATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGC-QGHRAELYAARVAKCLAALEGRE 388 (653)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i-~s~R~~i~llr~Ara~Aal~gr~ 388 (653)
.... ...++++.+..+++.+..... .+.|..+++++.|...+ .
T Consensus 207 i~~~-------------------------------~~~~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~-----~ 250 (272)
T 1d2n_A 207 ALEL-------------------------------LGNFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMD-----P 250 (272)
T ss_dssp HHHH-------------------------------HTCSCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSC-----G
T ss_pred HHHh-------------------------------cCCCCHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhc-----h
Confidence 2110 124678888888877654211 13688888887665433 2
Q ss_pred CccHHHHHHHH
Q 006254 389 KVNVDDLKKAV 399 (653)
Q Consensus 389 ~Vt~eDv~~A~ 399 (653)
....+++..++
T Consensus 251 ~~~~~~~~~~l 261 (272)
T 1d2n_A 251 EYRVRKFLALL 261 (272)
T ss_dssp GGHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34455554444
No 78
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.39 E-value=6.1e-13 Score=141.09 Aligned_cols=222 Identities=14% Similarity=0.084 Sum_probs=136.0
Q ss_pred cccCCCCCCCCceechHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccc
Q 006254 85 DSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDG 164 (653)
Q Consensus 85 ~~~~~~~~~f~~IvGq~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~ 164 (653)
...+.+|..|++++|++.++..|...+-.....++||+||+|||||++|++++..+.... +
T Consensus 15 ~~~k~rp~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~----------------~--- 75 (340)
T 1sxj_C 15 WVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKN----------------Y--- 75 (340)
T ss_dssp HHHHTCCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTS----------------H---
T ss_pred hHHHhCCCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCC----------------c---
Confidence 333567888999999999999886654433445699999999999999999999863100 0
Q ss_pred ccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHH
Q 006254 165 LDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLL 244 (653)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~L 244 (653)
...+..+.... . .|.-++...+.. ..+.+........|++|||++.++...++.|
T Consensus 76 ------------------~~~~~~~~~~~--~--~~~~~ir~~i~~---~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L 130 (340)
T 1sxj_C 76 ------------------SNMVLELNASD--D--RGIDVVRNQIKD---FASTRQIFSKGFKLIILDEADAMTNAAQNAL 130 (340)
T ss_dssp ------------------HHHEEEECTTS--C--CSHHHHHTHHHH---HHHBCCSSSCSCEEEEETTGGGSCHHHHHHH
T ss_pred ------------------cceEEEEcCcc--c--ccHHHHHHHHHH---HHhhcccCCCCceEEEEeCCCCCCHHHHHHH
Confidence 01122222111 0 110001000000 0000000112356999999999999999999
Q ss_pred HHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHHHhhhhHHhhh
Q 006254 245 LNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKM 324 (653)
Q Consensus 245 l~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~~~~ 324 (653)
+..+++.. ....+|.++| ....+.+++.+|+..+ .+. |.+.++..+++....
T Consensus 131 ~~~le~~~-------------~~~~~il~~n-~~~~i~~~i~sR~~~~-~~~-~l~~~~~~~~l~~~~------------ 182 (340)
T 1sxj_C 131 RRVIERYT-------------KNTRFCVLAN-YAHKLTPALLSQCTRF-RFQ-PLPQEAIERRIANVL------------ 182 (340)
T ss_dssp HHHHHHTT-------------TTEEEEEEES-CGGGSCHHHHTTSEEE-ECC-CCCHHHHHHHHHHHH------------
T ss_pred HHHHhcCC-------------CCeEEEEEec-CccccchhHHhhceeE-ecc-CCCHHHHHHHHHHHH------------
Confidence 99998753 2346777788 4567889999998744 666 455554444332110
Q ss_pred hhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHH
Q 006254 325 VEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (653)
Q Consensus 325 ~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~ 399 (653)
....+.+++++++.+++++ +. ..|..+.+++.+...+.-.|...|+.++|..++
T Consensus 183 -----------------~~~~~~i~~~~~~~i~~~s---~G-~~r~~~~~l~~~~~~~~~~~~~~it~~~v~~~~ 236 (340)
T 1sxj_C 183 -----------------VHEKLKLSPNAEKALIELS---NG-DMRRVLNVLQSCKATLDNPDEDEISDDVIYECC 236 (340)
T ss_dssp -----------------HTTTCCBCHHHHHHHHHHH---TT-CHHHHHHHTTTTTTTTCSSSCCCBCHHHHHHHT
T ss_pred -----------------HHcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHHHhcCCcccccccHHHHHHHh
Confidence 0134678999999988776 22 477777777543221111123479999988774
No 79
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.38 E-value=5.8e-13 Score=158.19 Aligned_cols=213 Identities=18% Similarity=0.168 Sum_probs=123.4
Q ss_pred CCCCCCCceechHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccccccc
Q 006254 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (653)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~ 168 (653)
.++..|+.|+|++..++.+...+......++||+||||||||++|++++..+...
T Consensus 164 ~r~~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~------------------------- 218 (854)
T 1qvr_A 164 AAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKG------------------------- 218 (854)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHT-------------------------
T ss_pred HhcCCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcC-------------------------
Confidence 3467899999999998888665555667789999999999999999999986310
Q ss_pred ccccccccccccccCCCeEeCCCCCcc--cceeeecchhhhhccCCccccccccccc----cCceEEecccccCC-----
Q 006254 169 AEYDTAGNLKTQIARSPFVQIPLGVTE--DRLIGSVDVEESVKTGTTVFQPGLLAEA----HRGVLYIDEINLLD----- 237 (653)
Q Consensus 169 ~~~~~~~~~~~~~~~~~fv~l~~~~~~--~~l~G~~d~~~~~~~g~~~~~~Gll~~A----~~giL~IDEi~~l~----- 237 (653)
..+....+.+++.++.+... ..+.|.. +..+ ..++..+ .+.||||||++.+.
T Consensus 219 -------~~p~~l~~~~~~~l~~~~l~~g~~~~g~~--~~~l--------~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~ 281 (854)
T 1qvr_A 219 -------DVPEGLKGKRIVSLQMGSLLAGAKYRGEF--EERL--------KAVIQEVVQSQGEVILFIDELHTVVGAGKA 281 (854)
T ss_dssp -------CSCTTSTTCEEEEECC-----------CH--HHHH--------HHHHHHHHTTCSSEEEEECCC---------
T ss_pred -------CCchhhcCCeEEEeehHHhhccCccchHH--HHHH--------HHHHHHHHhcCCCeEEEEecHHHHhccCCc
Confidence 00000124556666554321 1222211 1100 1122221 24599999999997
Q ss_pred ---HHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCC---cccHHHHhhhcccccccCCCCHhhHHHHHHHH
Q 006254 238 ---EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG---VVREHLLDRIAINLSADLPMTFEDRVAAVGIA 311 (653)
Q Consensus 238 ---~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg---~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~ 311 (653)
.+..+.|..+++.+. +.+|++||+.+. .++++|.+||.. |.++ +++.+++.+|++..
T Consensus 282 ~g~~~~~~~L~~~l~~~~---------------i~~I~at~~~~~~~~~~d~aL~rRf~~-i~l~-~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 282 EGAVDAGNMLKPALARGE---------------LRLIGATTLDEYREIEKDPALERRFQP-VYVD-EPTVEETISILRGL 344 (854)
T ss_dssp ----------HHHHHTTC---------------CCEEEEECHHHHHHHTTCTTTCSCCCC-EEEC-CCCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHhCCC---------------eEEEEecCchHHhhhccCHHHHhCCce-EEeC-CCCHHHHHHHHHhh
Confidence 566778888887764 568899886553 578999999997 6888 45788888887532
Q ss_pred HHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCC--CCcchHHHHHHHHHHHHHHc
Q 006254 312 TQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGC--QGHRAELYAARVAKCLAALE 385 (653)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i--~s~R~~i~llr~Ara~Aal~ 385 (653)
... ......+.++++++..+++++...-. .-.+..+.++..|.+.+.+.
T Consensus 345 ~~~-------------------------~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~lldea~a~~~~~ 395 (854)
T 1qvr_A 345 KEK-------------------------YEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAARLRMA 395 (854)
T ss_dssp HHH-------------------------HHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHHHHHHT
T ss_pred hhh-------------------------hhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHHHHHHHHHHHHHhh
Confidence 211 01122456677777777776655321 12345556665555555554
No 80
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.35 E-value=2.5e-13 Score=129.65 Aligned_cols=160 Identities=21% Similarity=0.267 Sum_probs=99.1
Q ss_pred CCCCCCceechHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccc
Q 006254 90 QFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKA 169 (653)
Q Consensus 90 ~~~~f~~IvGq~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~ 169 (653)
++..|+.++|++..++.+...+......+|+|+||+|||||++|++++..+.....
T Consensus 17 ~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~------------------------ 72 (195)
T 1jbk_A 17 EQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEV------------------------ 72 (195)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCS------------------------
T ss_pred hhccccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCC------------------------
Confidence 45678999999998888866555555678999999999999999999998631000
Q ss_pred cccccccccccccCCCeEeCCCCCcc--cceeeecchhhhhccCCcccccccc---cccc-CceEEecccccCC------
Q 006254 170 EYDTAGNLKTQIARSPFVQIPLGVTE--DRLIGSVDVEESVKTGTTVFQPGLL---AEAH-RGVLYIDEINLLD------ 237 (653)
Q Consensus 170 ~~~~~~~~~~~~~~~~fv~l~~~~~~--~~l~G~~d~~~~~~~g~~~~~~Gll---~~A~-~giL~IDEi~~l~------ 237 (653)
.......+++.+...... ....|.. ...+ ..++ ...+ +.||||||++.+.
T Consensus 73 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--------~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~ 134 (195)
T 1jbk_A 73 --------PEGLKGRRVLALDMGALVAGAKYRGEF--EERL--------KGVLNDLAKQEGNVILFIDELHTMVGAGKAD 134 (195)
T ss_dssp --------CGGGTTCEEEEECHHHHHTTTCSHHHH--HHHH--------HHHHHHHHHSTTTEEEEEETGGGGTT-----
T ss_pred --------chhhcCCcEEEeeHHHHhccCCccccH--HHHH--------HHHHHHHhhcCCCeEEEEeCHHHHhccCccc
Confidence 000012333333221100 0111110 0000 0111 1122 3489999999995
Q ss_pred --HHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCC----CcccHHHHhhhcccccccCCCCHhhHHHHH
Q 006254 238 --EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE----GVVREHLLDRIAINLSADLPMTFEDRVAAV 308 (653)
Q Consensus 238 --~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e----g~l~~aLldRf~~~v~l~~p~~~~~r~~I~ 308 (653)
..+++.|...++.+ ++.+|+++|..+ ..++++|++||.. +.+. +++.+++.+|+
T Consensus 135 ~~~~~~~~l~~~~~~~---------------~~~~i~~~~~~~~~~~~~~~~~l~~r~~~-i~~~-~p~~~~~~~il 194 (195)
T 1jbk_A 135 GAMDAGNMLKPALARG---------------ELHCVGATTLDEYRQYIEKDAALERRFQK-VFVA-EPSVEDTIAIL 194 (195)
T ss_dssp -CCCCHHHHHHHHHTT---------------SCCEEEEECHHHHHHHTTTCHHHHTTEEE-EECC-CCCHHHHHTTC
T ss_pred chHHHHHHHHHhhccC---------------CeEEEEeCCHHHHHHHHhcCHHHHHHhce-eecC-CCCHHHHHHHh
Confidence 44577787777654 356788888543 2578999999984 5887 45777766553
No 81
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.35 E-value=4.2e-12 Score=133.43 Aligned_cols=262 Identities=7% Similarity=-0.040 Sum_probs=142.0
Q ss_pred eechHHHHHHHH---Hhcc-cCCCceEEEECCCCCHHHHHHHHHHhhCCCC------eeeccccccCCCCCCC-cccccc
Q 006254 97 VVGQDAIKTALL---LGAI-DREIGGIAISGRRGTAKTVMARGLHAILPPI------EVVVGSIANADPTCPD-EWEDGL 165 (653)
Q Consensus 97 IvGq~~~k~aL~---~~av-~p~~~gVLL~GppGTGKT~lArala~~l~~~------~~v~~~~~nc~p~~~~-~~~~~~ 165 (653)
+.|++.-...|. ..++ .....+++|+||||||||++++.++..+... ..+...++||...... .....+
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 677776666552 2222 3456679999999999999999999988421 1234455666332111 000000
Q ss_pred cccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHH
Q 006254 166 DEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLL 245 (653)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll 245 (653)
...+ .... ++.+.... .+. ..+... .-......|+|||||+.|. .++.|+
T Consensus 102 ~~~L------------~g~~---~~~~~~~~-~L~------~~f~~~------~~~~~~~~ii~lDE~d~l~--~q~~L~ 151 (318)
T 3te6_A 102 WFAI------------SKEN---LCGDISLE-ALN------FYITNV------PKAKKRKTLILIQNPENLL--SEKILQ 151 (318)
T ss_dssp HHHH------------SCCC-----CCCCHH-HHH------HHHHHS------CGGGSCEEEEEEECCSSSC--CTHHHH
T ss_pred HHHh------------cCCC---CCchHHHH-HHH------HHHHHh------hhccCCceEEEEecHHHhh--cchHHH
Confidence 0000 0000 00000000 000 000000 0011224599999999997 455666
Q ss_pred HHHHcCceEEeeCCeeEEeecCcEEEEEecCCCC---cccHHHHhhhcc-cccccCCCCHhhHHHHHHHHHHHHhhhhHH
Q 006254 246 NVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG---VVREHLLDRIAI-NLSADLPMTFEDRVAAVGIATQFQERSNEV 321 (653)
Q Consensus 246 ~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg---~l~~aLldRf~~-~v~l~~p~~~~~r~~I~~~~~~~~~~~~~~ 321 (653)
..++-.. . ...+++||+.+|.-+- .|.+.+.+||+. .+.+. |++.++..+|++.+....... -|
T Consensus 152 ~l~~~~~--~--------~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~-pYt~~el~~Il~~Rl~~~~~~-~f 219 (318)
T 3te6_A 152 YFEKWIS--S--------KNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLN-KVDKNELQQMIITRLKSLLKP-FH 219 (318)
T ss_dssp HHHHHHH--C--------SSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECC-CCCHHHHHHHHHHHHHHHCCC-EE
T ss_pred HHHhccc--c--------cCCcEEEEEEecCcccchhhcchhhhccCCceEEEeC-CCCHHHHHHHHHHHHHhhhcc-cc
Confidence 5554110 0 0125789999985432 366778899984 45665 899999999988665432110 00
Q ss_pred hhhhhhhhhHHH--HHHH--HHHhhhc-----ccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHH--------
Q 006254 322 FKMVEEETDLAK--TQII--LAREYLK-----DVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAAL-------- 384 (653)
Q Consensus 322 ~~~~~~~~~~l~--~~i~--~ar~~l~-----~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal-------- 384 (653)
. +........ ..+. ......+ .+.++++++++++..++..++ ..|.++.+++.|..+|.-
T Consensus 220 -~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~G-D~R~Al~ilr~A~~~ae~e~~~k~~~ 296 (318)
T 3te6_A 220 -V-KVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNVANVSG-STEKAFKICEAAVEISKKDFVRKGGL 296 (318)
T ss_dssp -E-EECTTCCEEECCCC--------CTTEEEECEECCHHHHHHHHHHHHHHHC-SHHHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred -c-cccccccccccccccccccccccccccccccccCHHHHHHHHHHHHhhCC-hHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 0 000000000 0000 0000001 236899999999998776655 589999999999999965
Q ss_pred -cCCCCccHHHHHHHHHHHc
Q 006254 385 -EGREKVNVDDLKKAVELVI 403 (653)
Q Consensus 385 -~gr~~Vt~eDv~~A~~lvl 403 (653)
.|...||.+++..+..-++
T Consensus 297 ~~~~~~i~~~~~~~~~~~~~ 316 (318)
T 3te6_A 297 QKGKLVVSQEMVPRYFSEAI 316 (318)
T ss_dssp ETTEECCSEECCTHHHHHHH
T ss_pred CCCcEEeeHHHHHHHHHHHh
Confidence 3445677777777665543
No 82
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.33 E-value=4.2e-13 Score=127.94 Aligned_cols=155 Identities=21% Similarity=0.231 Sum_probs=96.1
Q ss_pred CCCCCCCceechHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccccccc
Q 006254 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (653)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~ 168 (653)
.++..|++++|++..+..+...+......+|||+||+|||||++|+.++..+.... .|.
T Consensus 16 ~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~---------~~~------------ 74 (187)
T 2p65_A 16 ARAGKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQGD---------VPD------------ 74 (187)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHTTC---------SCT------------
T ss_pred HhccccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHhcC---------Ccc------------
Confidence 34667899999999888886655555677899999999999999999999874200 000
Q ss_pred ccccccccccccccCCCeEeCCCCCcc--cceeeecchhhhhccCCccccccccccc-cCceEEecccccCC--------
Q 006254 169 AEYDTAGNLKTQIARSPFVQIPLGVTE--DRLIGSVDVEESVKTGTTVFQPGLLAEA-HRGVLYIDEINLLD-------- 237 (653)
Q Consensus 169 ~~~~~~~~~~~~~~~~~fv~l~~~~~~--~~l~G~~d~~~~~~~g~~~~~~Gll~~A-~~giL~IDEi~~l~-------- 237 (653)
...+.+++.+...... ....|.. ...+. ..-..+... .+.+|||||++.+.
T Consensus 75 -----------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~ 136 (187)
T 2p65_A 75 -----------SLKGRKLVSLDLSSLIAGAKYRGDF--EERLK-----SILKEVQDAEGQVVMFIDEIHTVVGAGAVAEG 136 (187)
T ss_dssp -----------TTTTCEEEEECHHHHHHHCCSHHHH--HHHHH-----HHHHHHHHTTTSEEEEETTGGGGSSSSSSCTT
T ss_pred -----------hhcCCeEEEEeHHHhhcCCCchhHH--HHHHH-----HHHHHHHhcCCceEEEEeCHHHhccccccccc
Confidence 0012233333211100 0011100 00000 000111122 23599999999997
Q ss_pred -HHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCC----CcccHHHHhhhcccccccCC
Q 006254 238 -EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE----GVVREHLLDRIAINLSADLP 298 (653)
Q Consensus 238 -~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e----g~l~~aLldRf~~~v~l~~p 298 (653)
..+++.|...++.+ ++.+|+++|+.+ ..++++|++||.. +.+..|
T Consensus 137 ~~~~~~~l~~~~~~~---------------~~~ii~~~~~~~~~~~~~~~~~l~~R~~~-i~i~~p 186 (187)
T 2p65_A 137 ALDAGNILKPMLARG---------------ELRCIGATTVSEYRQFIEKDKALERRFQQ-ILVEQP 186 (187)
T ss_dssp SCCTHHHHHHHHHTT---------------CSCEEEEECHHHHHHHTTTCHHHHHHEEE-EECCSC
T ss_pred chHHHHHHHHHHhcC---------------CeeEEEecCHHHHHHHHhccHHHHHhcCc-ccCCCC
Confidence 56778888888764 367899999654 3578999999996 577744
No 83
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.31 E-value=2.7e-11 Score=128.45 Aligned_cols=220 Identities=13% Similarity=0.110 Sum_probs=126.1
Q ss_pred cCCCCCCCCceechHHHHHHHHHhc-ccCCCceEEEECCCCCHHHHHHHHHHhh-CCCCe-e--eccccccCCCCCCCcc
Q 006254 87 YGRQFFPLAAVVGQDAIKTALLLGA-IDREIGGIAISGRRGTAKTVMARGLHAI-LPPIE-V--VVGSIANADPTCPDEW 161 (653)
Q Consensus 87 ~~~~~~~f~~IvGq~~~k~aL~~~a-v~p~~~gVLL~GppGTGKT~lArala~~-l~~~~-~--v~~~~~nc~p~~~~~~ 161 (653)
.+.+|..|++++|++.+++.|...+ -.....+++|+||+||||||++++++.. ..+-. . +.+..++. |. ..
T Consensus 6 ~kyrP~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~-~~---~~ 81 (354)
T 1sxj_E 6 DKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVT-AS---NR 81 (354)
T ss_dssp TTTCCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------
T ss_pred hccCCCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecc-cc---cc
Confidence 4567888999999999999987655 3333445999999999999999999994 43210 0 00000000 00 00
Q ss_pred cccccccccccccccccccccCCCeEeCCCCCcccceeeecc---hhhhhcc--CCcccc-----ccccccccCceEEec
Q 006254 162 EDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVD---VEESVKT--GTTVFQ-----PGLLAEAHRGVLYID 231 (653)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d---~~~~~~~--g~~~~~-----~Gll~~A~~giL~ID 231 (653)
|..|.. .....++.+.... .|..+ +...+.. ...... +|+ ..+..||+||
T Consensus 82 ~~~~~~-------------~~~~~~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l--~~~~~vlilD 141 (354)
T 1sxj_E 82 KLELNV-------------VSSPYHLEITPSD-----MGNNDRIVIQELLKEVAQMEQVDFQDSKDGL--AHRYKCVIIN 141 (354)
T ss_dssp ----CC-------------EECSSEEEECCC---------CCHHHHHHHHHHHTTTTC--------------CCEEEEEE
T ss_pred cceeee-------------ecccceEEecHhh-----cCCcchHHHHHHHHHHHHhcccccccccccc--CCCCeEEEEe
Confidence 000000 0012233332211 01100 1110000 000000 110 1245599999
Q ss_pred ccccCCHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHHH
Q 006254 232 EINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIA 311 (653)
Q Consensus 232 Ei~~l~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~ 311 (653)
|++.|+...++.|+..+++.. .+..+|.++| ....+.+++.+|+ ..+.+. |++.++..+++...
T Consensus 142 E~~~L~~~~~~~L~~~le~~~-------------~~~~~Il~t~-~~~~l~~~l~sR~-~~~~~~-~~~~~~~~~~l~~~ 205 (354)
T 1sxj_E 142 EANSLTKDAQAALRRTMEKYS-------------KNIRLIMVCD-SMSPIIAPIKSQC-LLIRCP-APSDSEISTILSDV 205 (354)
T ss_dssp CTTSSCHHHHHHHHHHHHHST-------------TTEEEEEEES-CSCSSCHHHHTTS-EEEECC-CCCHHHHHHHHHHH
T ss_pred CccccCHHHHHHHHHHHHhhc-------------CCCEEEEEeC-CHHHHHHHHHhhc-eEEecC-CcCHHHHHHHHHHH
Confidence 999999999999999998642 2356777777 5556889999999 455777 56777666555421
Q ss_pred HHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCC-HHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 006254 312 TQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIG-REQLKYLVMEALRGGCQGHRAELYAARVAK 379 (653)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is-~~~l~~l~~~~~~~~i~s~R~~i~llr~Ar 379 (653)
. . ...+.++ +++++.|++.+ +. +.|..+.++..+.
T Consensus 206 ~-------------------------~----~~~~~~~~~~~l~~i~~~~---~G-~~r~a~~~l~~~~ 241 (354)
T 1sxj_E 206 V-------------------------T----NERIQLETKDILKRIAQAS---NG-NLRVSLLMLESMA 241 (354)
T ss_dssp H-------------------------H----HHTCEECCSHHHHHHHHHH---TT-CHHHHHHHHTHHH
T ss_pred H-------------------------H----HcCCCCCcHHHHHHHHHHc---CC-CHHHHHHHHHHHH
Confidence 1 0 1245688 88889998776 22 5788888886543
No 84
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.30 E-value=9.1e-14 Score=163.74 Aligned_cols=156 Identities=18% Similarity=0.231 Sum_probs=108.8
Q ss_pred CCCCCCCceechHHHHHHHHHhcccC-------------CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCC
Q 006254 89 RQFFPLAAVVGQDAIKTALLLGAIDR-------------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADP 155 (653)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~~~av~p-------------~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p 155 (653)
.+.+.|++|+|++.+|+.|......| ...++||+||||||||++|++|+..+.
T Consensus 471 ~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~-------------- 536 (806)
T 1ypw_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ-------------- 536 (806)
T ss_dssp CCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT--------------
T ss_pred CccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC--------------
Confidence 45678999999999999996544432 245699999999999999999999873
Q ss_pred CCCCcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccc---cCceEEecc
Q 006254 156 TCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDE 232 (653)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~IDE 232 (653)
.+|+.+......+.++|... +.+ ..++..+ ..+||||||
T Consensus 537 ----------------------------~~~i~v~~~~l~~~~~g~~~--~~i--------~~~f~~a~~~~p~vl~iDE 578 (806)
T 1ypw_A 537 ----------------------------ANFISIKGPELLTMWFGESE--ANV--------REIFDKARQAAPCVLFFDE 578 (806)
T ss_dssp ----------------------------CCCCCCCCSSSTTCCTTTSS--HHH--------HHHHHHHHHHCSBCCCCSS
T ss_pred ----------------------------CCEEEEechHhhhhhcCccH--HHH--------HHHHHHHHhcCCeEEEEEC
Confidence 34555555554555565321 110 1122222 347999999
Q ss_pred cccCC--------------HHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHh--hhccccccc
Q 006254 233 INLLD--------------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSAD 296 (653)
Q Consensus 233 i~~l~--------------~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLld--Rf~~~v~l~ 296 (653)
|+.+. ..+++.||..|+... ...+++||+||| .+..++++|++ ||+..|+++
T Consensus 579 id~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~-----------~~~~v~vI~tTN-~~~~ld~allrpgRf~~~i~~~ 646 (806)
T 1ypw_A 579 LDSIAKARGGNIGDGGGAADRVINQILTEMDGMS-----------TKKNVFIIGATN-RPDIIDPAILRPGRLDQLIYIP 646 (806)
T ss_dssp HHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC-----------------CCBCCCCCB-SCGGGSCTTSSGGGTTSCCCCC
T ss_pred hhhhhhhccCCCCCcchhHHHHHHHHHHHHhccc-----------ccCCeEEEEecC-CcccCCHHHhCccccCceeecC
Confidence 99862 345566666665321 123688999999 66779999999 999999998
Q ss_pred CCCCHhhHHHHHH
Q 006254 297 LPMTFEDRVAAVG 309 (653)
Q Consensus 297 ~p~~~~~r~~I~~ 309 (653)
. ++.++|.+|++
T Consensus 647 ~-p~~~~r~~Il~ 658 (806)
T 1ypw_A 647 L-PDEKSRVAILK 658 (806)
T ss_dssp C-CCCSHHHHHTT
T ss_pred C-CCHHHHHHHHH
Confidence 5 58888888876
No 85
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.29 E-value=4.6e-12 Score=129.41 Aligned_cols=90 Identities=14% Similarity=0.131 Sum_probs=81.4
Q ss_pred eEEEEEeCCCCCCh-----hHHHHHHHHHHHHHHhHcC--CCCeEEEEEeecCCcEEEcCCCcCHHHHHHHHhcCCCCCC
Q 006254 563 LVIFVVDASGSMAL-----NRMQNAKGAALKLLAESYT--CRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPCGGG 635 (653)
Q Consensus 563 ~v~~vvD~SgSM~~-----~r~~~ak~a~~~ll~~ay~--~rd~v~li~F~~~~a~~~lp~t~~~~~~~~~L~~l~~gG~ 635 (653)
.+|||||+|+||.. +||..+|.++..|+...++ ..|+||||+|.|..+.++.|+|.+...+...|..+.++|+
T Consensus 5 AtViviD~S~SM~~~D~~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~~~vl~plT~D~~~il~aL~~l~~~G~ 84 (268)
T 4b4t_W 5 ATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVLSTFTAEFGKILAGLHDTQIEGK 84 (268)
T ss_dssp EEEEEECCSSTTSSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCEEEEEEESCHHHHHHHHTTCCCCSC
T ss_pred eEEEEEECCHHHhCCCCCCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecCCcceeccCCcchHHHHHHHhhhcCcCCC
Confidence 47999999999953 6999999999999875543 5699999999988888999999999999999999999999
Q ss_pred CchHHHHHHHHHHHhhc
Q 006254 636 SPLAHGLSMGWAKCGEE 652 (653)
Q Consensus 636 Tpl~~gl~~a~~~l~~~ 652 (653)
|+++.||..|+..|..+
T Consensus 85 T~l~~gL~~A~~aLk~~ 101 (268)
T 4b4t_W 85 LHMATALQIAQLTLKHR 101 (268)
T ss_dssp CCHHHHHHHHHHHHHTC
T ss_pred CChHHHHHHHHHHHHhc
Confidence 99999999999999764
No 86
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=99.25 E-value=1.2e-11 Score=120.97 Aligned_cols=90 Identities=14% Similarity=0.249 Sum_probs=80.9
Q ss_pred ceEEEEEeCCCCCCh-----hHHHHHHHHHHHHHHhH--cCCCCeEEEEEeecCCcEEEcCCCcCHHHHHHHHhcCCCCC
Q 006254 562 ALVIFVVDASGSMAL-----NRMQNAKGAALKLLAES--YTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPCGG 634 (653)
Q Consensus 562 ~~v~~vvD~SgSM~~-----~r~~~ak~a~~~ll~~a--y~~rd~v~li~F~~~~a~~~lp~t~~~~~~~~~L~~l~~gG 634 (653)
..++|+||.|+||.. +|+..+|.++..|+... .+.+|+||||+|.|..+.+++|+|.+...+...|+.+.++|
T Consensus 3 e~lvlvlD~S~SM~~~D~~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa~~~a~~~~plT~d~~~i~~~L~~l~~~g 82 (192)
T 2x5n_A 3 EATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQVLSTLTRDYGKFLSAMHDLPVRG 82 (192)
T ss_dssp EEEEEEECCSGGGGCTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCCEEEEEESCHHHHHHHHTTCCCCS
T ss_pred eEEEEEEECCHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCcEEecCCCCCHHHHHHHHHcCCCCC
Confidence 468999999999953 69999999999887543 36889999999987679999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHhh
Q 006254 635 GSPLAHGLSMGWAKCGE 651 (653)
Q Consensus 635 ~Tpl~~gl~~a~~~l~~ 651 (653)
+|+++.||..|++.|..
T Consensus 83 ~t~l~~aL~~A~~~l~~ 99 (192)
T 2x5n_A 83 NAKFGDGIQIAQLALKH 99 (192)
T ss_dssp CCCHHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHh
Confidence 99999999999998865
No 87
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.15 E-value=1.8e-11 Score=144.19 Aligned_cols=156 Identities=19% Similarity=0.201 Sum_probs=103.3
Q ss_pred CCCCCCCceechHHHHHHHHHhcc-------------cCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCC
Q 006254 89 RQFFPLAAVVGQDAIKTALLLGAI-------------DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADP 155 (653)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~~~av-------------~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p 155 (653)
...+.|++|+|++..++.|...+. .+...+|||+||||||||++|++|+..++
T Consensus 198 ~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~-------------- 263 (806)
T 1ypw_A 198 LNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG-------------- 263 (806)
T ss_dssp SSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT--------------
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC--------------
Confidence 346789999999988887732221 12345799999999999999999999874
Q ss_pred CCCCcccccccccccccccccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccc---cCceEEecc
Q 006254 156 TCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDE 232 (653)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~IDE 232 (653)
.+|+.+......+.+.|.. +.. ...++..+ ..++|||||
T Consensus 264 ----------------------------~~~i~v~~~~l~~~~~g~~--~~~--------l~~vf~~a~~~~p~il~iDE 305 (806)
T 1ypw_A 264 ----------------------------AFFFLINGPEIMSKLAGES--ESN--------LRKAFEEAEKNAPAIIFIDE 305 (806)
T ss_dssp ----------------------------CEEEEEEHHHHSSSSTTHH--HHH--------HHHHHHHHHHHCSEEEEEES
T ss_pred ----------------------------CcEEEEEchHhhhhhhhhH--HHH--------HHHHHHHHHhcCCcEEEecc
Confidence 2344333221112222211 000 01122222 357999999
Q ss_pred cccCC-----------HHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHh--hhcccccccCCC
Q 006254 233 INLLD-----------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPM 299 (653)
Q Consensus 233 i~~l~-----------~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLld--Rf~~~v~l~~p~ 299 (653)
|+.+. ..+++.|+..++... ....+++|++|| .+..+++++.. ||...+.+.. +
T Consensus 306 id~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~-----------~~~~v~vI~atn-~~~~ld~al~r~gRf~~~i~i~~-p 372 (806)
T 1ypw_A 306 LDAIAPKREKTHGEVERRIVSQLLTLMDGLK-----------QRAHVIVMAATN-RPNSIDPALRRFGRFDREVDIGI-P 372 (806)
T ss_dssp GGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC-----------TTSCCEEEEECS-CTTTSCTTTTSTTSSCEEECCCC-C
T ss_pred HHHhhhccccccchHHHHHHHHHHHHhhhhc-----------ccccEEEecccC-CchhcCHHHhcccccccccccCC-C
Confidence 97664 346788888887432 123688999999 55667888877 8988888885 5
Q ss_pred CHhhHHHHHH
Q 006254 300 TFEDRVAAVG 309 (653)
Q Consensus 300 ~~~~r~~I~~ 309 (653)
+.++|.+|+.
T Consensus 373 ~~~~r~~il~ 382 (806)
T 1ypw_A 373 DATGRLEILQ 382 (806)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 8888888876
No 88
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=99.13 E-value=3.4e-10 Score=109.48 Aligned_cols=91 Identities=18% Similarity=0.201 Sum_probs=79.1
Q ss_pred CCceEEEEEeCCCCCChhHHHHHHHHHHHHHHhHc--CCCCeEEEEEeecCCcEEEcCC--CcCHHHHHHHHhcCCC-CC
Q 006254 560 AGALVIFVVDASGSMALNRMQNAKGAALKLLAESY--TCRDQVSIIPFRGDSAEVLLPP--SRSIAMARKRLERLPC-GG 634 (653)
Q Consensus 560 ~~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~ay--~~rd~v~li~F~~~~a~~~lp~--t~~~~~~~~~L~~l~~-gG 634 (653)
.+..++||||.||||+..++..+|.++..++.... ..+++||||.|+ ..+.+.+|+ +.+...+...|..++. ||
T Consensus 4 ~~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~-~~~~~~~~l~~~~~~~~~~~~i~~l~~~~g 82 (189)
T 1atz_A 4 QPLDVILLLDGSSSFPASYFDEMKSFAKAFISKANIGPRLTQVSVLQYG-SITTIDVPWNVVPEKAHLLSLVDVMQREGG 82 (189)
T ss_dssp CCEEEEEEEECSSSSCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEES-SSEEEEECTTCCCCHHHHHHHHHTCCCCCC
T ss_pred CceeEEEEEeCCCCCChhhHHHHHHHHHHHHHhcCcCCCCeEEEEEEEC-CcceEEEecCCCCCHHHHHHHHHhCcCCCC
Confidence 36899999999999999999999999999986543 345899999995 568888887 7899999999999984 89
Q ss_pred CCchHHHHHHHHHHHhh
Q 006254 635 GSPLAHGLSMGWAKCGE 651 (653)
Q Consensus 635 ~Tpl~~gl~~a~~~l~~ 651 (653)
+|+++.||..|.+.+..
T Consensus 83 ~T~~~~aL~~a~~~l~~ 99 (189)
T 1atz_A 83 PSQIGDALGFAVRYLTS 99 (189)
T ss_dssp CCCHHHHHHHHHHHHHS
T ss_pred cchHHHHHHHHHHHHhc
Confidence 99999999999998754
No 89
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=99.09 E-value=5.9e-10 Score=106.95 Aligned_cols=88 Identities=14% Similarity=0.176 Sum_probs=77.3
Q ss_pred CceEEEEEeCCCCCChhHHHHHHHHHHHHHHhHc--CCCCeEEEEEeecCCcEEEcCCCc----CHHHHHHHHhcCC-CC
Q 006254 561 GALVIFVVDASGSMALNRMQNAKGAALKLLAESY--TCRDQVSIIPFRGDSAEVLLPPSR----SIAMARKRLERLP-CG 633 (653)
Q Consensus 561 ~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~ay--~~rd~v~li~F~~~~a~~~lp~t~----~~~~~~~~L~~l~-~g 633 (653)
...++||||.||||+..++..+|.++..++.... ...++||||+|+ ..+.+.+|++. +...+...|..++ .+
T Consensus 17 ~~divfvlD~SgSm~~~~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~-~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~ 95 (178)
T 2xgg_A 17 QLDICFLIDSSGSIGIQNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYS-TDVHLQWDLQSPNAVDKQLAAHAVLDMPYKK 95 (178)
T ss_dssp CEEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEES-SSEEEEECTTSGGGSCHHHHHHHHHHCCCCC
T ss_pred CeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEEeC-CceEEEEeCCCCCccCHHHHHHHHHhCCCCC
Confidence 7899999999999998899999999999986543 346999999996 45888889887 7788999999998 79
Q ss_pred CCCchHHHHHHHHHHH
Q 006254 634 GGSPLAHGLSMGWAKC 649 (653)
Q Consensus 634 G~Tpl~~gl~~a~~~l 649 (653)
|+|+++.||..|.+.+
T Consensus 96 g~T~~~~aL~~a~~~l 111 (178)
T 2xgg_A 96 GSTNTSDGLKACKQIL 111 (178)
T ss_dssp CCCCHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHh
Confidence 9999999999999876
No 90
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=99.06 E-value=1.9e-10 Score=113.43 Aligned_cols=91 Identities=26% Similarity=0.376 Sum_probs=78.9
Q ss_pred ccCCceEEEEEeCCCCCCh-----hHHHHHHHHHHHHHHhHcCCCCeEEEEEeecCCcEEEcCCCcCHHHHHHHHhcCCC
Q 006254 558 RKAGALVIFVVDASGSMAL-----NRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPC 632 (653)
Q Consensus 558 ~~~~~~v~~vvD~SgSM~~-----~r~~~ak~a~~~ll~~ay~~rd~v~li~F~~~~a~~~lp~t~~~~~~~~~L~~l~~ 632 (653)
.+.+..++||||+||||.. +||..+|.++..++.. + .+|+||||+|++ .+.+++|+|.+...+...|..+.+
T Consensus 8 ~~~~~~iv~vlD~SgSM~~~d~~~~r~~~ak~~~~~~~~~-~-~~~~v~lv~F~~-~~~~~~~~~~~~~~~~~~l~~l~~ 84 (218)
T 3ibs_A 8 KRKGVEVIIALDISNSMLAQDVQPSRLEKAKRLISRLVDE-L-DNDKVGMIVFAG-DAFTQLPITSDYISAKMFLESISP 84 (218)
T ss_dssp --CCCEEEEEEECSGGGGCCSSSSCHHHHHHHHHHHHHHT-C-SSCEEEEEEESS-SEEEEEEEESCHHHHHHHHHTCCG
T ss_pred ccCCCcEEEEEECCcCcccccCCcCHHHHHHHHHHHHHHh-C-CCCeEEEEEECC-CceEeCCCCCCHHHHHHHHHhcCc
Confidence 4568999999999999975 3999999999999854 3 489999999964 588999999999999999999976
Q ss_pred ----CCCCchHHHHHHHHHHHhh
Q 006254 633 ----GGGSPLAHGLSMGWAKCGE 651 (653)
Q Consensus 633 ----gG~Tpl~~gl~~a~~~l~~ 651 (653)
+|+|+++.||..|.+.+..
T Consensus 85 ~~~~~g~T~l~~al~~a~~~l~~ 107 (218)
T 3ibs_A 85 SLISKQGTAIGEAINLATRSFTP 107 (218)
T ss_dssp GGCCSCSCCHHHHHHHHHTTSCS
T ss_pred ccCCCCCCcHHHHHHHHHHHHhh
Confidence 7999999999999987754
No 91
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=99.04 E-value=5.7e-10 Score=123.33 Aligned_cols=91 Identities=23% Similarity=0.332 Sum_probs=81.4
Q ss_pred cCCceEEEEEeCCCCCC--hhHHHHHHHHHHHHHHhHcCCCCeEEEEEeecCCcEEEcCCC--------cCHHHHHHHHh
Q 006254 559 KAGALVIFVVDASGSMA--LNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPS--------RSIAMARKRLE 628 (653)
Q Consensus 559 ~~~~~v~~vvD~SgSM~--~~r~~~ak~a~~~ll~~ay~~rd~v~li~F~~~~a~~~lp~t--------~~~~~~~~~L~ 628 (653)
+.+..++||||+||||. +.||..+|.++..++ +.+..+|+|+||+|+ ..+.+++|+| .+...+...|.
T Consensus 75 ~~~~dvv~VLD~SGSM~~~~~rl~~ak~a~~~ll-~~L~~~drv~lV~Fs-~~a~~~~p~t~~l~~~~~~~~~~l~~~I~ 152 (464)
T 4fx5_A 75 GSENVEVIIIDCSGSMDYPRTKMMAAKEATKVAI-DTLTDGAFFAVVAGT-EGARVVYPTGGQLLRADYQSRAAAKEAVG 152 (464)
T ss_dssp -CCEEEEEEEECCGGGGTTTHHHHHHHHHHHHHH-HHSCTTCEEEEEEES-SSEEEEESSSSSCEECSHHHHHHHHHHHH
T ss_pred CCCceEEEEEEcCcccCCCCchHHHHHHHHHHHH-HhCCCCCEEEEEEEc-CceEEEecCCcccccCCHHHHHHHHHHHH
Confidence 45899999999999998 899999999999998 456899999999996 5688898986 57888899999
Q ss_pred cCCCCCCCchHHHHHHHHHHHhh
Q 006254 629 RLPCGGGSPLAHGLSMGWAKCGE 651 (653)
Q Consensus 629 ~l~~gG~Tpl~~gl~~a~~~l~~ 651 (653)
.+.++|+|+++.||..|++.|.+
T Consensus 153 ~L~~~GgT~l~~aL~~A~~~l~~ 175 (464)
T 4fx5_A 153 RLHANGGTAMGRWLAQAGRIFDT 175 (464)
T ss_dssp TCCCCSCCCHHHHHHHHHHHHTT
T ss_pred cCCCCCCCcHHHHHHHHHHHHhc
Confidence 99999999999999999999864
No 92
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.04 E-value=2.8e-09 Score=112.76 Aligned_cols=167 Identities=14% Similarity=0.085 Sum_probs=95.8
Q ss_pred chHHHHHHHHHhcccCCCc-eEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCC---CCccccccccccccccc
Q 006254 99 GQDAIKTALLLGAIDREIG-GIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTC---PDEWEDGLDEKAEYDTA 174 (653)
Q Consensus 99 Gq~~~k~aL~~~av~p~~~-gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~---~~~~~~~~~~~~~~~~~ 174 (653)
.+++.++.|.-+.-..... .+||+||+|||||++|+++++.+. |.... +-..|..|..... .
T Consensus 6 w~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~-----------~~~~~~~~~c~~c~~c~~~~~---~ 71 (334)
T 1a5t_A 6 WLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLL-----------CQQPQGHKSCGHCRGCQLMQA---G 71 (334)
T ss_dssp GGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHT-----------CSSCBTTBCCSCSHHHHHHHH---T
T ss_pred chHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHh-----------CCCCCCCCCCCCCHHHHHHhc---C
Confidence 4566777775544433333 499999999999999999999874 21110 1112333322110 0
Q ss_pred ccccccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHHHHHHcCceE
Q 006254 175 GNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNI 254 (653)
Q Consensus 175 ~~~~~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~l~~g~~~ 254 (653)
....|..+..... ..-.|.-++.. +.... ...| ..+...|++|||++.|+.+.++.|+..+++..
T Consensus 72 -------~~~d~~~~~~~~~-~~~~~i~~ir~-l~~~~-~~~~---~~~~~kvviIdead~l~~~a~naLLk~lEep~-- 136 (334)
T 1a5t_A 72 -------THPDYYTLAPEKG-KNTLGVDAVRE-VTEKL-NEHA---RLGGAKVVWVTDAALLTDAAANALLKTLEEPP-- 136 (334)
T ss_dssp -------CCTTEEEECCCTT-CSSBCHHHHHH-HHHHT-TSCC---TTSSCEEEEESCGGGBCHHHHHHHHHHHTSCC--
T ss_pred -------CCCCEEEEecccc-CCCCCHHHHHH-HHHHH-hhcc---ccCCcEEEEECchhhcCHHHHHHHHHHhcCCC--
Confidence 0122343332100 00111101111 10000 0001 12345699999999999999999999998642
Q ss_pred EeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHH
Q 006254 255 VEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAV 308 (653)
Q Consensus 255 v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~ 308 (653)
.+.++|.++| ....+.+.+++|+.. +.+. |++.++..+++
T Consensus 137 -----------~~~~~Il~t~-~~~~l~~ti~SRc~~-~~~~-~~~~~~~~~~L 176 (334)
T 1a5t_A 137 -----------AETWFFLATR-EPERLLATLRSRCRL-HYLA-PPPEQYAVTWL 176 (334)
T ss_dssp -----------TTEEEEEEES-CGGGSCHHHHTTSEE-EECC-CCCHHHHHHHH
T ss_pred -----------CCeEEEEEeC-ChHhCcHHHhhccee-eeCC-CCCHHHHHHHH
Confidence 3567777777 567889999999975 4776 55666554443
No 93
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=99.02 E-value=1.3e-09 Score=107.56 Aligned_cols=91 Identities=14% Similarity=0.296 Sum_probs=76.7
Q ss_pred cCCceEEEEEeCCCCCChhHHHHHHHHHHHHHHhH--cCCCCeEEEEEeecCCcEEEc----CCCcCHHHHHHHHhcCCC
Q 006254 559 KAGALVIFVVDASGSMALNRMQNAKGAALKLLAES--YTCRDQVSIIPFRGDSAEVLL----PPSRSIAMARKRLERLPC 632 (653)
Q Consensus 559 ~~~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~a--y~~rd~v~li~F~~~~a~~~l----p~t~~~~~~~~~L~~l~~ 632 (653)
..+..++||||.||||....+..+|.++..++... +...++|+||.|+ ..+.+.+ |.+.+...+...|+.+..
T Consensus 13 ~~~~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 91 (223)
T 1q0p_A 13 SGSMNIYLVLDGSDSIGASNFTGAKKSLVNLIEKVASYGVKPRYGLVTYA-TYPKIWVKVSEADSSNADWVTKQLNEINY 91 (223)
T ss_dssp --CEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEES-SSEEEEECTTSGGGGCHHHHHHHHHTCCT
T ss_pred CCceeEEEEEeCCCCCchHHHHHHHHHHHHHHHHHhcCCCCceEEEEEec-CccceeeccccCCCCCHHHHHHHHHhccc
Confidence 35899999999999999888999999999998543 3567999999996 4577777 555677889999999984
Q ss_pred -----CCCCchHHHHHHHHHHHh
Q 006254 633 -----GGGSPLAHGLSMGWAKCG 650 (653)
Q Consensus 633 -----gG~Tpl~~gl~~a~~~l~ 650 (653)
+|+|+++.||..|++.|.
T Consensus 92 ~~~~~~g~T~~~~aL~~a~~~l~ 114 (223)
T 1q0p_A 92 EDHKLKSGTNTKKALQAVYSMMS 114 (223)
T ss_dssp TSCSCTTCCCHHHHHHHHHHHHC
T ss_pred ccccCCCCccHHHHHHHHHHHhh
Confidence 799999999999999886
No 94
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=99.00 E-value=5.3e-10 Score=107.25 Aligned_cols=88 Identities=20% Similarity=0.247 Sum_probs=70.0
Q ss_pred CCceEEEEEeCCCCCChhHHHHHHHHHHHHHHhHcCCCCeEEEEEeecCCcEEEcCCCcCHHHHHHHHhcCC---CCCCC
Q 006254 560 AGALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLP---CGGGS 636 (653)
Q Consensus 560 ~~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~ay~~rd~v~li~F~~~~a~~~lp~t~~~~~~~~~L~~l~---~gG~T 636 (653)
.+.+++||||.||||..+ ....+.++..++......+++||||+|+ +.+.+++|+|.+...+...|+.+. +||+|
T Consensus 6 ~~~div~vlD~SgSM~~~-~~~~~~~~~~~~~~~~~~~~~v~lv~f~-~~~~~~~~l~~~~~~~~~~i~~l~~~~~~g~T 83 (185)
T 3n2n_F 6 GGFDLYFILDKSGSVLHH-WNEIYYFVEQLAHKFISPQLRMSFIVFS-TRGTTLMKLTEDREQIRQGLEELQKVLPGGDT 83 (185)
T ss_dssp SEEEEEEEEECSGGGGGG-HHHHHHHHHHHHHHCCCTTEEEEEEEES-SSEEEEEEEECCHHHHHHHHHHHHTCCCCSCC
T ss_pred CCeeEEEEEeCCCChhhh-HHHHHHHHHHHHHHhCCCCcEEEEEEEe-cCceEEeccCCCHHHHHHHHHHHhhhcCCCCc
Confidence 478999999999999753 3334455555554445678999999995 568899999998888887776654 79999
Q ss_pred chHHHHHHHHHHH
Q 006254 637 PLAHGLSMGWAKC 649 (653)
Q Consensus 637 pl~~gl~~a~~~l 649 (653)
+++.||..|.+.+
T Consensus 84 ~~~~al~~a~~~l 96 (185)
T 3n2n_F 84 YMHEGFERASEQI 96 (185)
T ss_dssp CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 9999999999977
No 95
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.99 E-value=1.5e-09 Score=116.99 Aligned_cols=245 Identities=16% Similarity=0.065 Sum_probs=138.2
Q ss_pred CCCCceechHHHHHHHHHhc----c-c--CCCceEEE--ECCCCCHHHHHHHHHHhhCCCCe-----eeccccccCCCCC
Q 006254 92 FPLAAVVGQDAIKTALLLGA----I-D--REIGGIAI--SGRRGTAKTVMARGLHAILPPIE-----VVVGSIANADPTC 157 (653)
Q Consensus 92 ~~f~~IvGq~~~k~aL~~~a----v-~--p~~~gVLL--~GppGTGKT~lArala~~l~~~~-----~v~~~~~nc~p~~ 157 (653)
+.+..++|++..+..|...+ . . .....++| +|++|+|||++++.+++.+.... ....+.++|.+..
T Consensus 19 ~~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (412)
T 1w5s_A 19 YIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAP 98 (412)
T ss_dssp CCCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCC
T ss_pred cCCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCC
Confidence 34478999998777663322 2 2 23456999 99999999999999998764210 1122344442211
Q ss_pred C-CcccccccccccccccccccccccCCCeEeCC-CCCcccceeeecchhhhhccCCcccccccccc-ccCceEEecccc
Q 006254 158 P-DEWEDGLDEKAEYDTAGNLKTQIARSPFVQIP-LGVTEDRLIGSVDVEESVKTGTTVFQPGLLAE-AHRGVLYIDEIN 234 (653)
Q Consensus 158 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~-~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~-A~~giL~IDEi~ 234 (653)
. ..++..+...+ ..+ .+ .+.+.+.++..+ . ..+.. ...-+|+|||++
T Consensus 99 ~~~~~~~~l~~~l-------------~~~---~~~~~~~~~~~~~~l-------------~-~~l~~~~~~~llvlDe~~ 148 (412)
T 1w5s_A 99 NLYTILSLIVRQT-------------GYP---IQVRGAPALDILKAL-------------V-DNLYVENHYLLVILDEFQ 148 (412)
T ss_dssp SHHHHHHHHHHHH-------------TCC---CCCTTCCHHHHHHHH-------------H-HHHHHHTCEEEEEEESTH
T ss_pred CHHHHHHHHHHHh-------------CCC---CCCCCCCHHHHHHHH-------------H-HHHHhcCCeEEEEEeCHH
Confidence 0 00000000000 000 00 000000111100 0 01111 123489999999
Q ss_pred cCC------HHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCC--Cccc---HHHHhhhcccccccCCCCHhh
Q 006254 235 LLD------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE--GVVR---EHLLDRIAINLSADLPMTFED 303 (653)
Q Consensus 235 ~l~------~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e--g~l~---~aLldRf~~~v~l~~p~~~~~ 303 (653)
.+. .+.+..|+..+.... .++ ...++.+|+++|..+ ..+. +.+.++|...+.+. |.+.++
T Consensus 149 ~l~~~~~~~~~~l~~l~~~~~~~~----~~~----~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~-~l~~~e 219 (412)
T 1w5s_A 149 SMLSSPRIAAEDLYTLLRVHEEIP----SRD----GVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLP-AYKSRE 219 (412)
T ss_dssp HHHSCTTSCHHHHHHHHTHHHHSC----CTT----SCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECC-CCCHHH
T ss_pred HHhhccCcchHHHHHHHHHHHhcc----cCC----CCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeC-CCCHHH
Confidence 985 367777777776421 001 013567888876221 1344 66777887666776 677776
Q ss_pred HHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcC---CCCcchHHHHHHHHHH
Q 006254 304 RVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGG---CQGHRAELYAARVAKC 380 (653)
Q Consensus 304 r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~---i~s~R~~i~llr~Ara 380 (653)
..+++..... .......+++++++.+++.+.... . ..|..+.+++.+..
T Consensus 220 ~~~ll~~~~~---------------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~G-~p~~~~~l~~~a~~ 271 (412)
T 1w5s_A 220 LYTILEQRAE---------------------------LGLRDTVWEPRHLELISDVYGEDKGGDG-SARRAIVALKMACE 271 (412)
T ss_dssp HHHHHHHHHH---------------------------HHBCTTSCCHHHHHHHHHHHCGGGTSCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---------------------------hcCCCCCCChHHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHH
Confidence 6666542111 111224588899999988886422 2 47888888888888
Q ss_pred HHHHcCCCCccHHHHHHHHHHHc
Q 006254 381 LAALEGREKVNVDDLKKAVELVI 403 (653)
Q Consensus 381 ~Aal~gr~~Vt~eDv~~A~~lvl 403 (653)
.|...+...|+.+++..+.....
T Consensus 272 ~a~~~~~~~i~~~~v~~~~~~~~ 294 (412)
T 1w5s_A 272 MAEAMGRDSLSEDLVRKAVSENE 294 (412)
T ss_dssp HHHHTTCSSCCHHHHHHHHHHC-
T ss_pred HHHHcCCCCCCHHHHHHHHHHHh
Confidence 88888888999999998876543
No 96
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=98.99 E-value=7.1e-10 Score=106.04 Aligned_cols=87 Identities=24% Similarity=0.295 Sum_probs=70.6
Q ss_pred CCceEEEEEeCCCCCChh---HHHHHHHHHHHHHHhHcCCCCeEEEEEeecCCcEEEcCCCcCHHHHHHHHhc---CCCC
Q 006254 560 AGALVIFVVDASGSMALN---RMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLER---LPCG 633 (653)
Q Consensus 560 ~~~~v~~vvD~SgSM~~~---r~~~ak~a~~~ll~~ay~~rd~v~li~F~~~~a~~~lp~t~~~~~~~~~L~~---l~~g 633 (653)
.+..|+||||.||||..+ ++..++.++..|+ ..+++|+||.|+ ..+.+.+|++.+...+...|+. +.++
T Consensus 5 ~~~dvv~vlD~SgSM~~~~~~~~~~~~~~~~~~~----~~~~~v~lv~f~-~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 79 (182)
T 1shu_X 5 RAFDLYFVLDKSGSVANNWIEIYNFVQQLAERFV----SPEMRLSFIVFS-SQATIILPLTGDRGKISKGLEDLKRVSPV 79 (182)
T ss_dssp SCEEEEEEEECSGGGGGGHHHHHHHHHHHHHHCC----CTTEEEEEEEES-SSEEEEEEEECCHHHHHHHHHHHHTCCCC
T ss_pred CceeEEEEEECCCCcccCHHHHHHHHHHHHHHhc----CCCceEEEEEeC-CCceEEECCCCCHHHHHHHHHhcccCCCC
Confidence 478999999999999874 4456666666554 479999999995 5688899999888887766664 4589
Q ss_pred CCCchHHHHHHHHHHHhh
Q 006254 634 GGSPLAHGLSMGWAKCGE 651 (653)
Q Consensus 634 G~Tpl~~gl~~a~~~l~~ 651 (653)
|+|+++.||..|.+.+..
T Consensus 80 g~T~~~~al~~a~~~l~~ 97 (182)
T 1shu_X 80 GETYIHEGLKLANEQIQK 97 (182)
T ss_dssp SCCCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHh
Confidence 999999999999998854
No 97
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=98.95 E-value=3.6e-09 Score=103.66 Aligned_cols=88 Identities=10% Similarity=0.163 Sum_probs=74.6
Q ss_pred CceEEEEEeCCCCCChhHHHHHHHHHHHHHHhHc--CCCCeEEEEEeecCCcEEEcCCC--cCHHHHHHHHhcCCC-CC-
Q 006254 561 GALVIFVVDASGSMALNRMQNAKGAALKLLAESY--TCRDQVSIIPFRGDSAEVLLPPS--RSIAMARKRLERLPC-GG- 634 (653)
Q Consensus 561 ~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~ay--~~rd~v~li~F~~~~a~~~lp~t--~~~~~~~~~L~~l~~-gG- 634 (653)
+..++||||.||||+..++..+|.++..++.... ..+++||||.|+ ..+.+.+|++ .+...+...|+.++. ||
T Consensus 13 ~~divfvlD~SgSm~~~~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs-~~~~~~~~l~~~~~~~~~~~~i~~l~~~gg~ 91 (202)
T 1ijb_A 13 LLDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYH-DGSHAYIGLKDRKRPSELRRIASQVKYAGSQ 91 (202)
T ss_dssp CEEEEEEEECBTTSCHHHHHHHHHHHHHHHHTBCBSTTSEEEEEEEES-SSEEEEECTTCCCCHHHHHHHHHTCCCCCBS
T ss_pred cccEEEEEECCCCCCHHHHHHHHHHHHHHHHhcccCCCceEEEEEEEC-CCceEEEecCCCCCHHHHHHHHHhCcCCCCC
Confidence 7899999999999998899999999999986432 367899999996 4588888887 688889999999985 34
Q ss_pred CCchHHHHHHHHHHH
Q 006254 635 GSPLAHGLSMGWAKC 649 (653)
Q Consensus 635 ~Tpl~~gl~~a~~~l 649 (653)
+|+++.||..|++.+
T Consensus 92 ~T~~~~aL~~a~~~~ 106 (202)
T 1ijb_A 92 VASTSEVLKYTLFQI 106 (202)
T ss_dssp CCCHHHHHHHHHHHT
T ss_pred cCcHHHHHHHHHHHH
Confidence 499999999998654
No 98
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=98.94 E-value=1.1e-09 Score=106.20 Aligned_cols=89 Identities=12% Similarity=0.195 Sum_probs=75.3
Q ss_pred CCceEEEEEeCCCCCChhHHHHHHHHHHHHHHhHcCCCCeEEEEEeecCCcEEEcCCCc--CHHHHHHHHhcCC-CCCCC
Q 006254 560 AGALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSR--SIAMARKRLERLP-CGGGS 636 (653)
Q Consensus 560 ~~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~ay~~rd~v~li~F~~~~a~~~lp~t~--~~~~~~~~L~~l~-~gG~T 636 (653)
.+..++||||.||||...++..+|.++..++......+++|+||.|+ ..+.+.+|++. +...+...|+.++ .||+|
T Consensus 4 ~~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~v~vv~f~-~~~~~~~~l~~~~~~~~~~~~i~~l~~~~g~T 82 (194)
T 1mf7_A 4 EDSDIAFLIDGSGSIIPHDFRRMKEFVSTVMEQLKKSKTLFSLMQYS-EEFRIHFTFKEFQNNPNPRSLVKPITQLLGRT 82 (194)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHCCTTEEEEEEEES-SSEEEEECHHHHHHSCCHHHHHTTCCCCCSCB
T ss_pred CCeeEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEec-CCceEEEecCCcCCHHHHHHHHHhCcCCCCCc
Confidence 36899999999999998889999999999987655568999999995 56888888875 3346778899987 49999
Q ss_pred chHHHHHHHHHHH
Q 006254 637 PLAHGLSMGWAKC 649 (653)
Q Consensus 637 pl~~gl~~a~~~l 649 (653)
+++.||..|.+.+
T Consensus 83 ~~~~aL~~a~~~l 95 (194)
T 1mf7_A 83 HTATGIRKVVREL 95 (194)
T ss_dssp CHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHh
Confidence 9999999999754
No 99
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.92 E-value=1.6e-09 Score=139.78 Aligned_cols=85 Identities=19% Similarity=0.120 Sum_probs=65.5
Q ss_pred CceEEecccccCCH------HHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCC--C--cccHHHHhhhccccc
Q 006254 225 RGVLYIDEINLLDE------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE--G--VVREHLLDRIAINLS 294 (653)
Q Consensus 225 ~giL~IDEi~~l~~------~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e--g--~l~~aLldRf~~~v~ 294 (653)
..||||||||.... ..++.|.+.++.|.....+.+..... .++.+||||||.. | .++++|++||.++ .
T Consensus 1337 ~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~-~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi-~ 1414 (2695)
T 4akg_A 1337 NLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTI-ERIHIVGACNPPTDPGRIPMSERFTRHAAIL-Y 1414 (2695)
T ss_dssp CEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEE-ESEEEEEEECCTTSTTCCCCCHHHHTTEEEE-E
T ss_pred eEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEe-cCEEEEEecCCCccCCCccCChhhhheeeEE-E
Confidence 46999999987543 37889999999887655555555555 6899999999874 3 6999999999654 8
Q ss_pred ccCCCCHhhHHHHHHHHH
Q 006254 295 ADLPMTFEDRVAAVGIAT 312 (653)
Q Consensus 295 l~~p~~~~~r~~I~~~~~ 312 (653)
++. ++.+.+..|+....
T Consensus 1415 i~~-P~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1415 LGY-PSGKSLSQIYEIYY 1431 (2695)
T ss_dssp CCC-CTTTHHHHHHHHHH
T ss_pred eCC-CCHHHHHHHHHHHH
Confidence 885 47888888877543
No 100
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=98.88 E-value=6.3e-09 Score=116.08 Aligned_cols=91 Identities=19% Similarity=0.191 Sum_probs=80.3
Q ss_pred cCCceEEEEEeCCCCCChhHHHHHHHHHHHHHHhH--cCCCCeEEEEEeecCCcEEEcCCCc----CHHHHHHHHhcCCC
Q 006254 559 KAGALVIFVVDASGSMALNRMQNAKGAALKLLAES--YTCRDQVSIIPFRGDSAEVLLPPSR----SIAMARKRLERLPC 632 (653)
Q Consensus 559 ~~~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~a--y~~rd~v~li~F~~~~a~~~lp~t~----~~~~~~~~L~~l~~ 632 (653)
..+.+++||||.||||...+++.+|.++..|+... +..+++||||+|+ +.+.+++|++. +...+...|+.++.
T Consensus 7 ~~~~divfvlD~SgSM~~~~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~-~~~~~~~~l~~~~~~~~~~~~~~l~~l~~ 85 (509)
T 2odp_A 7 SGHLNLYLLLDASQSVSENDFLIFKESASLMVDRIFSFEINVSVAIITFA-SEPKVLMSVLNDNSRDMTEVISSLENANY 85 (509)
T ss_dssp SSEEEEEEEEECSTTSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEES-SSEEEEECTTSGGGGCHHHHHHHHHTCCG
T ss_pred CCCeeEEEEEeCCCccchhhHHHHHHHHHHHHHHhhccCCCceEEEEEcc-CCCceeEeccCCCCCCHHHHHHHHHhccc
Confidence 34789999999999999889999999999998543 3789999999995 56889999876 88999999999977
Q ss_pred C-----CCCchHHHHHHHHHHHh
Q 006254 633 G-----GGSPLAHGLSMGWAKCG 650 (653)
Q Consensus 633 g-----G~Tpl~~gl~~a~~~l~ 650 (653)
+ |+|+++.||..|.++|.
T Consensus 86 ~~~~~~ggT~~~~aL~~a~~~l~ 108 (509)
T 2odp_A 86 KDHENGTGTNTYAALNSVYLMMN 108 (509)
T ss_dssp GGGTTCCSCCHHHHHHHHHHHHH
T ss_pred ccCCCCCCccHHHHHHHHHHHHh
Confidence 5 99999999999999884
No 101
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=98.87 E-value=4.8e-09 Score=107.45 Aligned_cols=92 Identities=13% Similarity=0.078 Sum_probs=77.6
Q ss_pred cCCceEEEEEeCCCCCChhHH-HHHHHHHHHHHHhHc--CCCCeEEEEEeecCCcEEEcCCCcC----HHHHHHHHhcC-
Q 006254 559 KAGALVIFVVDASGSMALNRM-QNAKGAALKLLAESY--TCRDQVSIIPFRGDSAEVLLPPSRS----IAMARKRLERL- 630 (653)
Q Consensus 559 ~~~~~v~~vvD~SgSM~~~r~-~~ak~a~~~ll~~ay--~~rd~v~li~F~~~~a~~~lp~t~~----~~~~~~~L~~l- 630 (653)
..+.+|+||||.||||+...+ ..+|.++..++.... ...++||||+|+ ..+.+++|++.. ...+...|+.+
T Consensus 16 ~~~~DivfvlD~SgSM~~~~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs-~~~~~~~~l~~~~~~~~~~~~~~i~~l~ 94 (266)
T 4hqo_A 16 NEQVDLYLLVDGSGSIGYPNWITKVIPMLNGLINSLSLSRDTINLYMNLFG-SYTTELIRLGSGQSIDKRQALSKVTELR 94 (266)
T ss_dssp CCCEEEEEEEECSTTTCHHHHHHTHHHHHHHHHHTCCBCTTSEEEEEEEES-SSEEEEECTTSHHHHCHHHHHHHHHHHH
T ss_pred CCceeEEEEEECCCCcChhHHHHHHHHHHHHHHHHcccCCCCcEEEEEEec-CCcceEEecCCCCccCHHHHHHHHHHhh
Confidence 347899999999999998766 588999999986543 378999999996 458889998864 67788888888
Q ss_pred ---CCCCCCchHHHHHHHHHHHhh
Q 006254 631 ---PCGGGSPLAHGLSMGWAKCGE 651 (653)
Q Consensus 631 ---~~gG~Tpl~~gl~~a~~~l~~ 651 (653)
.++|+|+++.||..|.+++..
T Consensus 95 ~~~~~~G~T~~~~AL~~a~~~l~~ 118 (266)
T 4hqo_A 95 KTYTPYGTTSMTAALDEVQKHLND 118 (266)
T ss_dssp HHCCCCSCCCHHHHHHHHHHHHHT
T ss_pred hccCCCCCCCHHHHHHHHHHHHhh
Confidence 689999999999999888764
No 102
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=98.84 E-value=7.4e-09 Score=101.15 Aligned_cols=88 Identities=17% Similarity=0.150 Sum_probs=75.2
Q ss_pred CCceEEEEEeCCCCCChhHHHHHHHHHHHHHHhHc--CCCCeEEEEEeecCCcEEEcCCCc--CHHHHHHHHhcCCC-CC
Q 006254 560 AGALVIFVVDASGSMALNRMQNAKGAALKLLAESY--TCRDQVSIIPFRGDSAEVLLPPSR--SIAMARKRLERLPC-GG 634 (653)
Q Consensus 560 ~~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~ay--~~rd~v~li~F~~~~a~~~lp~t~--~~~~~~~~L~~l~~-gG 634 (653)
.+.+++||||.||||+..++..+|.++..++.... ...++||||.|+ +.+.+.+|++. +...+...|+.++. ||
T Consensus 20 ~~~DivfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs-~~~~~~~~l~~~~~~~~~~~~i~~l~~~gg 98 (199)
T 3zqk_A 20 MVLDVAFVLEGSDKIGEADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYS-YMVTVEYPFSEAQSKGDILQRLREIRYQGG 98 (199)
T ss_dssp CCCEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSBEEEEEEES-SSEEEEECTTSCCCHHHHHHHHHHCCCCCC
T ss_pred CCcCEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEEEC-CcccEEEecCCcCCHHHHHHHHHhCcCCCC
Confidence 47899999999999998889999999999986542 589999999996 56888888875 78889999999874 44
Q ss_pred -CCchHHHHHHHHHH
Q 006254 635 -GSPLAHGLSMGWAK 648 (653)
Q Consensus 635 -~Tpl~~gl~~a~~~ 648 (653)
+|.++.||..|++.
T Consensus 99 ~~T~~~~aL~~a~~~ 113 (199)
T 3zqk_A 99 NRTNTGLALRYLSDH 113 (199)
T ss_dssp SCCCHHHHHHHCCCC
T ss_pred CcChHHHHHHHHHHH
Confidence 59999999998864
No 103
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=98.83 E-value=1.1e-08 Score=113.48 Aligned_cols=88 Identities=16% Similarity=0.307 Sum_probs=77.6
Q ss_pred ceEEEEEeCCCCCChhHHHHHHHHHHHHHHh--HcCCCCeEEEEEeecCCcEEEc----CCCcCHHHHHHHHhcCC----
Q 006254 562 ALVIFVVDASGSMALNRMQNAKGAALKLLAE--SYTCRDQVSIIPFRGDSAEVLL----PPSRSIAMARKRLERLP---- 631 (653)
Q Consensus 562 ~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~--ay~~rd~v~li~F~~~~a~~~l----p~t~~~~~~~~~L~~l~---- 631 (653)
.+++||||.||||+.+|+..+|.++..++.. .+..+++||||+|+ +.+.+.+ |.|.+...+...|+.+.
T Consensus 2 ~div~vlD~SgSM~~~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~-~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 80 (497)
T 1rrk_A 2 MNIYLVLDGSDSIGASNFTGAKKVLVNLIEKVASYGVKPRYGLVTYA-TYPKIWVKVSEADSSNADWVTKQLNEINYEDH 80 (497)
T ss_dssp EEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEES-SSEEEEECTTSGGGGCHHHHHHHHHHCCGGGS
T ss_pred eeEEEEEECCCCcchhhHHHHHHHHHHHHHHhhccCCCceEEEEEec-CCceEeeccccccccCHHHHHHHHHhCcCccc
Confidence 5799999999999999999999999999865 45678999999996 5578887 66788999999999998
Q ss_pred -CCCCCchHHHHHHHHHHHh
Q 006254 632 -CGGGSPLAHGLSMGWAKCG 650 (653)
Q Consensus 632 -~gG~Tpl~~gl~~a~~~l~ 650 (653)
.+|+|+++.||..|.+.+.
T Consensus 81 ~~~g~T~~~~al~~a~~~l~ 100 (497)
T 1rrk_A 81 KLKSGTNTKKALQAVYSMMS 100 (497)
T ss_dssp CCTTCCCHHHHHHHHHHHHC
T ss_pred cccCccCHHHHHHHHHHHhh
Confidence 5789999999999999883
No 104
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.83 E-value=1.6e-08 Score=105.80 Aligned_cols=150 Identities=15% Similarity=0.074 Sum_probs=90.9
Q ss_pred chHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCccccccccccccccccccc
Q 006254 99 GQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLK 178 (653)
Q Consensus 99 Gq~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~~~~~~~~ 178 (653)
||+++...|...+-......+||+||+|+|||++|+++++... .|..
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~----------~~~~----------------------- 47 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVE----------KFPP----------------------- 47 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHH----------TSCC-----------------------
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCc----------hhhc-----------------------
Confidence 6777888776544433445799999999999999999998421 1211
Q ss_pred ccccCCCeEeCCCCCcccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHHHHHHcCceEEeeC
Q 006254 179 TQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVERE 258 (653)
Q Consensus 179 ~~~~~~~fv~l~~~~~~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~l~~g~~~v~r~ 258 (653)
....|..+...- .-.|.-++.. +.... ...| ..+...|+||||++.|..+.+|+|+..|++..
T Consensus 48 ---~~~d~~~l~~~~---~~~~id~ir~-li~~~-~~~p---~~~~~kvviIdead~lt~~a~naLLk~LEep~------ 110 (305)
T 2gno_A 48 ---KASDVLEIDPEG---ENIGIDDIRT-IKDFL-NYSP---ELYTRKYVIVHDCERMTQQAANAFLKALEEPP------ 110 (305)
T ss_dssp ---CTTTEEEECCSS---SCBCHHHHHH-HHHHH-TSCC---SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCC------
T ss_pred ---cCCCEEEEcCCc---CCCCHHHHHH-HHHHH-hhcc---ccCCceEEEeccHHHhCHHHHHHHHHHHhCCC------
Confidence 022344443221 0112111111 11100 0111 01235699999999999999999999999753
Q ss_pred CeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccCCCCHhhHHHHHHH
Q 006254 259 GISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGI 310 (653)
Q Consensus 259 G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~ 310 (653)
.+.++|.+|| ....+.+.+++| .+.+. |++.++..+.+..
T Consensus 111 -------~~t~fIl~t~-~~~kl~~tI~SR---~~~f~-~l~~~~i~~~L~~ 150 (305)
T 2gno_A 111 -------EYAVIVLNTR-RWHYLLPTIKSR---VFRVV-VNVPKEFRDLVKE 150 (305)
T ss_dssp -------TTEEEEEEES-CGGGSCHHHHTT---SEEEE-CCCCHHHHHHHHH
T ss_pred -------CCeEEEEEEC-ChHhChHHHHce---eEeCC-CCCHHHHHHHHHH
Confidence 3456666666 566889999999 55777 5566665555543
No 105
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.83 E-value=5.2e-08 Score=125.96 Aligned_cols=142 Identities=20% Similarity=0.132 Sum_probs=101.5
Q ss_pred CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeEeCCCCCc
Q 006254 115 EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVT 194 (653)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~ 194 (653)
...|+++.||+|||||++++.+++.++. ....|||+++ +.
T Consensus 644 ~~~~~~l~GpaGtGKTe~vk~LA~~lg~----~~v~~nc~e~------------------------------------ld 683 (2695)
T 4akg_A 644 QKYGGCFFGPAGTGKTETVKAFGQNLGR----VVVVFNCDDS------------------------------------FD 683 (2695)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHTTTC----CCEEEETTSS------------------------------------CC
T ss_pred hCCCCcccCCCCCCcHHHHHHHHHHhCC----cEEEEECCCC------------------------------------CC
Confidence 3468999999999999999999999973 1222455221 11
Q ss_pred ccceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHH-------HHHHHcCceEEeeCCeeEEeecC
Q 006254 195 EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLL-------LNVLTEGVNIVEREGISFKHPCK 267 (653)
Q Consensus 195 ~~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~L-------l~~l~~g~~~v~r~G~s~~~p~~ 267 (653)
...+ |.+ + .|+. ..|.++++||||+++.+++..| ..++.++...+.-+|..+..+..
T Consensus 684 ~~~l-g~~------~-------~g~~--~~Gaw~~~DE~nr~~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~ 747 (2695)
T 4akg_A 684 YQVL-SRL------L-------VGIT--QIGAWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPH 747 (2695)
T ss_dssp HHHH-HHH------H-------HHHH--HHTCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTT
T ss_pred hhHh-hHH------H-------HHHH--hcCCEeeehhhhhcChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCC
Confidence 1111 210 0 1111 2367999999999999998888 67777787777778988888889
Q ss_pred cEEEEEecCCC---CcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHH
Q 006254 268 PLLIATYNPEE---GVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQF 314 (653)
Q Consensus 268 ~~lIattNp~e---g~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~ 314 (653)
|.+++||||.- .+|+++|.+||-.+ .+..| +.+...+|+-....|
T Consensus 748 ~~vfiT~NPgy~g~~eLP~~Lk~~Fr~v-~m~~P-d~~~i~ei~l~s~Gf 795 (2695)
T 4akg_A 748 TAVFITLNPGYNGRSELPENLKKSFREF-SMKSP-QSGTIAEMILQIMGF 795 (2695)
T ss_dssp CEEEEEECCCSSSSCCCCHHHHTTEEEE-ECCCC-CHHHHHHHHHHHHHC
T ss_pred ceEEEEeCCCccCcccccHHHHhheEEE-EeeCC-CHHHHHHHHHHhcCC
Confidence 99999999843 36999999999654 77754 777777776544443
No 106
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=98.82 E-value=1.3e-08 Score=118.73 Aligned_cols=91 Identities=15% Similarity=0.302 Sum_probs=81.1
Q ss_pred ccCCceEEEEEeCCCCCChhHHHHHHHHHHHHHHhH--cCCCCeEEEEEeecCCcEEEcCCCc----CHHHHHHHHhcCC
Q 006254 558 RKAGALVIFVVDASGSMALNRMQNAKGAALKLLAES--YTCRDQVSIIPFRGDSAEVLLPPSR----SIAMARKRLERLP 631 (653)
Q Consensus 558 ~~~~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~a--y~~rd~v~li~F~~~~a~~~lp~t~----~~~~~~~~L~~l~ 631 (653)
.+.+.+|+||||.||||..+.+..+|.++..|+... +..+++||||+|+ ..+.+++|++. +...+.+.|+.+.
T Consensus 240 ~~~~~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~-~~~~~~~~l~~~~~~~~~~~~~~i~~l~ 318 (741)
T 3hrz_D 240 PSGSMNIYLVLDGSGSIGASDFTGAKKCLVNLIEKVASYGVKPRYGLVTYA-TYPKIWVKVSEADSSNADWVTKQLNEIN 318 (741)
T ss_dssp TTCEEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEES-SSEEEEECTTSGGGGCHHHHHHHHTTCC
T ss_pred CCCceeEEEEeccCCcccccchHHHHHHHHHHHHhhhccCCCceEEEEEec-cCCceeEeecccCCcCHHHHHHHHHhcc
Confidence 344899999999999999888999999999998653 4578999999996 56889999987 8888999999998
Q ss_pred -----CCCCCchHHHHHHHHHHH
Q 006254 632 -----CGGGSPLAHGLSMGWAKC 649 (653)
Q Consensus 632 -----~gG~Tpl~~gl~~a~~~l 649 (653)
.+|+|+++.||..|++.|
T Consensus 319 ~~~~~~~ggT~~~~aL~~a~~~l 341 (741)
T 3hrz_D 319 YEDHKLKSGTNTKKALQAVYSMM 341 (741)
T ss_dssp GGGGSSSCCCCHHHHHHHHHHHH
T ss_pred cccccCCCChHHHHHHHHHHHHH
Confidence 899999999999999988
No 107
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=98.81 E-value=9.2e-09 Score=98.74 Aligned_cols=88 Identities=11% Similarity=0.042 Sum_probs=70.6
Q ss_pred CceEEEEEeCCCCCChhHHHHHHHHHHHHHHhHcCCCCeEEEEEeecCCcEEEcCCCcCH--HHHHHHHhcCCC-CCCCc
Q 006254 561 GALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSI--AMARKRLERLPC-GGGSP 637 (653)
Q Consensus 561 ~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~ay~~rd~v~li~F~~~~a~~~lp~t~~~--~~~~~~L~~l~~-gG~Tp 637 (653)
+..++||||.||||+..++..+|.++..++......+++||||.|+ ..+.+.+|++... ..+...++.+.. +|+|+
T Consensus 2 ~~divfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~rv~vv~fs-~~~~~~~~l~~~~~~~~~~~~~~~i~~~~g~T~ 80 (179)
T 1mjn_A 2 NVDLVFLFDGSMSLQPDEFQKILDFMKDVMKKCSNTSYQFAAVQFS-TSYKTEFDFSDYVKRKDPDALLKHVKHMLLLTN 80 (179)
T ss_dssp CEEEEEEEECBTTCCHHHHHHHHHHHHHHHHHTTTSSEEEEEEEES-SSEEEEECHHHHHHHCCHHHHHTTCCCCCBCCC
T ss_pred CccEEEEEeCCCCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEC-CceeEEEcCcccCCHHHHHHHHHhcccCCCCCh
Confidence 5689999999999998889999999999987654556799999996 5688888887532 234556666654 78999
Q ss_pred hHHHHHHHHHHH
Q 006254 638 LAHGLSMGWAKC 649 (653)
Q Consensus 638 l~~gl~~a~~~l 649 (653)
++.||..|.+.+
T Consensus 81 ~~~aL~~a~~~~ 92 (179)
T 1mjn_A 81 TFGAINYVATEV 92 (179)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999998643
No 108
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=98.81 E-value=7.1e-09 Score=106.88 Aligned_cols=90 Identities=18% Similarity=0.163 Sum_probs=74.0
Q ss_pred CCceEEEEEeCCCCCCh-hHHHHHHHHHHHHHHhHcCC---CCeEEEEEeecCCcEEEcCCCcC----HHHHHHHHhcCC
Q 006254 560 AGALVIFVVDASGSMAL-NRMQNAKGAALKLLAESYTC---RDQVSIIPFRGDSAEVLLPPSRS----IAMARKRLERLP 631 (653)
Q Consensus 560 ~~~~v~~vvD~SgSM~~-~r~~~ak~a~~~ll~~ay~~---rd~v~li~F~~~~a~~~lp~t~~----~~~~~~~L~~l~ 631 (653)
.+.+|+||||.||||+. +++..+|.++..++.. +.. .++||||+|+ +.+.+++|++.. ...+...|+.|.
T Consensus 20 ~~~div~vlD~SgSM~~~~~~~~~k~~~~~~v~~-l~~~~~~~rvglv~Fs-~~~~~~~~l~~~~~~~~~~l~~~i~~l~ 97 (281)
T 4hqf_A 20 DEVDLYLLMDGSGSIRRHNWVNHAVPLAMKLIQQ-LNLNDNAIHLYASVFS-NNAREIIRLHSDASKNKEKALIIIKSLL 97 (281)
T ss_dssp SCEEEEEEEECCCCSSTHHHHHHHHHHHHHHHTT-CCCCTTSEEEEEEEEE-TTEEEEEEECSSCSSCHHHHHHHHHHHH
T ss_pred CceeEEEEEeCCCCcCHHHHHHHHHHHHHHHHHH-hccCCCCcEEEEEEcC-CCceEEEEccccCccCHHHHHHHHHHHh
Confidence 58999999999999987 4558999999999854 343 8999999997 457788777653 677777787775
Q ss_pred ----CCCCCchHHHHHHHHHHHhh
Q 006254 632 ----CGGGSPLAHGLSMGWAKCGE 651 (653)
Q Consensus 632 ----~gG~Tpl~~gl~~a~~~l~~ 651 (653)
.+|+|+++.||..|.+.+..
T Consensus 98 ~~~~~~G~T~~~~aL~~a~~~l~~ 121 (281)
T 4hqf_A 98 STNLPYGKTSLTDALLQVRKHLND 121 (281)
T ss_dssp HTTGGGCSCCHHHHHHHHHHHHHT
T ss_pred hccCCCCCccHHHHHHHHHHHHHh
Confidence 59999999999999888754
No 109
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=98.76 E-value=3.5e-08 Score=96.21 Aligned_cols=85 Identities=15% Similarity=0.129 Sum_probs=71.5
Q ss_pred CceEEEEEeCCCCCChhHHHHHHHHHHHHHHhHc--CCCCeEEEEEeecCCcEEEcCCC--cCHHHHHHHHhcCCC-CC-
Q 006254 561 GALVIFVVDASGSMALNRMQNAKGAALKLLAESY--TCRDQVSIIPFRGDSAEVLLPPS--RSIAMARKRLERLPC-GG- 634 (653)
Q Consensus 561 ~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~ay--~~rd~v~li~F~~~~a~~~lp~t--~~~~~~~~~L~~l~~-gG- 634 (653)
+..++||||.||||. .+..+|.++..++.... ..+++||||+|+ ..+.+.+|++ .+...+...|..++. ||
T Consensus 6 ~~div~vlD~SgSm~--~~~~~k~~~~~~~~~l~~~~~~~rvglv~f~-~~~~~~~~l~~~~~~~~~~~~i~~l~~~~G~ 82 (200)
T 1v7p_C 6 LIDVVVVCDESNSIY--PWDAVKNFLEKFVQGLDIGPTKTQVGLIQYA-NNPRVVFNLNTYKTKEEMIVATSQTSQYGGD 82 (200)
T ss_dssp CEEEEEEEECCTTCC--CHHHHHHHHHHHHHTSCBSTTSEEEEEEEES-SSEEEEECTTTCSSHHHHHHHHHHCCCCCCS
T ss_pred cccEEEEEECCCCcc--cHHHHHHHHHHHHHhcCCCCCceEEEEEEEC-CCceEEEeCCCcCCHHHHHHHHHhhhccCCC
Confidence 689999999999998 37788999999985432 368999999996 4588888988 477888899999975 44
Q ss_pred CCchHHHHHHHHHH
Q 006254 635 GSPLAHGLSMGWAK 648 (653)
Q Consensus 635 ~Tpl~~gl~~a~~~ 648 (653)
+|+++.||..|.+.
T Consensus 83 ~T~~~~al~~a~~~ 96 (200)
T 1v7p_C 83 LTNTFGAIQYARKY 96 (200)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHh
Confidence 69999999999986
No 110
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=98.71 E-value=6.7e-09 Score=100.71 Aligned_cols=89 Identities=12% Similarity=0.109 Sum_probs=71.1
Q ss_pred CCceEEEEEeCCCCCChhHHHHHHHHHHHHHHhHcCCCCeEEEEEeecCCcEEEcCCCcC--HHHHHHHHhcCC-CCCCC
Q 006254 560 AGALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRS--IAMARKRLERLP-CGGGS 636 (653)
Q Consensus 560 ~~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~ay~~rd~v~li~F~~~~a~~~lp~t~~--~~~~~~~L~~l~-~gG~T 636 (653)
.+..++||||.||||....+..++.++..++......+++|+||+|++ .+.+.+|++.. ...+...|..+. .+|+|
T Consensus 8 ~~~div~vlD~SgSM~~~~~~~~~~~~~~~~~~l~~~~~~v~lv~f~~-~~~~~~~~~~~~~~~~~~~~i~~l~~~~g~T 86 (198)
T 1n3y_A 8 QEQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSN-KFQTHFTFEEFRRSSNPLSLLASVHQLQGFT 86 (198)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHHHHHHHHTTSCTTTEEEEEEEESS-SEEEEECHHHHHHCSSGGGGGTTCCCCCSCB
T ss_pred CCeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEEeCC-CccEEEecCccCCHHHHHHHHhcCcCCCCCc
Confidence 478999999999999987777888888888854337999999999964 57888887542 234556777775 68999
Q ss_pred chHHHHHHHHHHH
Q 006254 637 PLAHGLSMGWAKC 649 (653)
Q Consensus 637 pl~~gl~~a~~~l 649 (653)
+++.||..|.+.+
T Consensus 87 ~~~~al~~a~~~l 99 (198)
T 1n3y_A 87 YTATAIQNVVHRL 99 (198)
T ss_dssp CHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHH
Confidence 9999999999543
No 111
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=98.66 E-value=8.5e-08 Score=95.14 Aligned_cols=86 Identities=16% Similarity=0.174 Sum_probs=70.8
Q ss_pred CceEEEEEeCCCCCChhHHHHHHHHHHHHHHhHc--CCCCeEEEEEeecCCcEEEcCCC--cCHHHHHHHHhcCCC-CC-
Q 006254 561 GALVIFVVDASGSMALNRMQNAKGAALKLLAESY--TCRDQVSIIPFRGDSAEVLLPPS--RSIAMARKRLERLPC-GG- 634 (653)
Q Consensus 561 ~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~ay--~~rd~v~li~F~~~~a~~~lp~t--~~~~~~~~~L~~l~~-gG- 634 (653)
+..++||||.||||. .+..+|.++..++.... ..+++||||+|+ +.+.+.+|++ .+...+...|..+.. ||
T Consensus 22 ~~div~vlD~SgSM~--~~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~-~~~~~~~~l~~~~~~~~~~~~i~~l~~~gG~ 98 (223)
T 2b2x_A 22 QLDIVIVLDGSNSIY--PWESVIAFLNDLLKRMDIGPKQTQVGIVQYG-ENVTHEFNLNKYSSTEEVLVAANKIVQRGGR 98 (223)
T ss_dssp CEEEEEEEECSTTCC--CHHHHHHHHHHHHTTSCCSTTSCCEEEEEES-SSEEEEECTTTCCSHHHHHHHHTTCCCCCCS
T ss_pred cceEEEEEECCCChh--hHHHHHHHHHHHHHhcccCCCCeEEEEEEeC-CCccEEEecCCCCCHHHHHHHHHhhhccCCC
Confidence 689999999999998 37788999999985432 479999999996 5688888876 367788889998875 44
Q ss_pred CCchHHHHHHHHHHH
Q 006254 635 GSPLAHGLSMGWAKC 649 (653)
Q Consensus 635 ~Tpl~~gl~~a~~~l 649 (653)
+|+++.||..|.+.+
T Consensus 99 ~T~~~~aL~~a~~~l 113 (223)
T 2b2x_A 99 QTMTALGIDTARKEA 113 (223)
T ss_dssp SCCHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHh
Confidence 599999999999863
No 112
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=98.65 E-value=1.1e-07 Score=93.69 Aligned_cols=86 Identities=16% Similarity=0.160 Sum_probs=70.6
Q ss_pred CceEEEEEeCCCCCChhHHHHHHHHHHHHHHhH--cCCCCeEEEEEeecCCcEEEcCCC--cCHHHHHHHHhcCCC-CC-
Q 006254 561 GALVIFVVDASGSMALNRMQNAKGAALKLLAES--YTCRDQVSIIPFRGDSAEVLLPPS--RSIAMARKRLERLPC-GG- 634 (653)
Q Consensus 561 ~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~a--y~~rd~v~li~F~~~~a~~~lp~t--~~~~~~~~~L~~l~~-gG- 634 (653)
+..++||||.||||. .+..+|.++..++... ...+++||||+|+ ..+.+.+|++ .+...+...|..+.. ||
T Consensus 7 ~~div~vlD~SgSm~--~~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~-~~~~~~~~l~~~~~~~~~~~~i~~l~~~~G~ 83 (213)
T 1pt6_A 7 QLDIVIVLDGSNSIY--PWDSVTAFLNDLLKRMDIGPKQTQVGIVQYG-ENVTHEFNLNKYSSTEEVLVAAKKIVQRGGR 83 (213)
T ss_dssp CEEEEEEEECCTTCC--CHHHHHHHHHHHHTTSCBSTTSBEEEEEEES-SSEEEEECTTTCSSHHHHHHHHHTCCCCCCS
T ss_pred CccEEEEEECCCChh--hHHHHHHHHHHHHHhcCCCCCCeEEEEEEeC-CCccEEEeccccCCHHHHHHHHHhccCCCCC
Confidence 689999999999998 3778899999988543 2479999999996 5688888886 367778889998875 45
Q ss_pred CCchHHHHHHHHHHH
Q 006254 635 GSPLAHGLSMGWAKC 649 (653)
Q Consensus 635 ~Tpl~~gl~~a~~~l 649 (653)
+|+++.||..|.+.+
T Consensus 84 ~T~~~~aL~~a~~~l 98 (213)
T 1pt6_A 84 QTMTALGTDTARKEA 98 (213)
T ss_dssp SCCHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHh
Confidence 599999999999863
No 113
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.64 E-value=1.2e-08 Score=97.70 Aligned_cols=52 Identities=17% Similarity=0.113 Sum_probs=36.0
Q ss_pred CCCCCCCceec----hHHHHHHHHH--hcc-cCCCceEEEECCCCCHHHHHHHHHHhhC
Q 006254 89 RQFFPLAAVVG----QDAIKTALLL--GAI-DREIGGIAISGRRGTAKTVMARGLHAIL 140 (653)
Q Consensus 89 ~~~~~f~~IvG----q~~~k~aL~~--~av-~p~~~gVLL~GppGTGKT~lArala~~l 140 (653)
.++.+|+.+++ +..+...+.. .-. .+...+++|+||+|||||+++++++..+
T Consensus 4 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 4 YWNANLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CTTCCSSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred hhhCccccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 45678888886 3334333321 111 1235679999999999999999999986
No 114
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.63 E-value=1e-07 Score=124.04 Aligned_cols=146 Identities=18% Similarity=0.244 Sum_probs=96.2
Q ss_pred CCceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeEe--CCCC
Q 006254 115 EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQ--IPLG 192 (653)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~--l~~~ 192 (653)
...+|||.||+|||||++++.+...++. .+++. .+..
T Consensus 1303 ~~~pvLL~GptGtGKT~li~~~L~~l~~-----------------------------------------~~~~~infS~~ 1341 (3245)
T 3vkg_A 1303 EHRPLILCGPPGSGKTMTLTSTLRAFPD-----------------------------------------FEVVSLNFSSA 1341 (3245)
T ss_dssp TTCCCEEESSTTSSHHHHHHHHGGGCTT-----------------------------------------EEEEEECCCTT
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhCCC-----------------------------------------CceEEEEeeCC
Confidence 4679999999999999888765555442 12222 3344
Q ss_pred CcccceeeecchhhhhccCCccccc--ccccccc----CceEEecccccCCH------HHHHHHHHHHHcCceEEeeCCe
Q 006254 193 VTEDRLIGSVDVEESVKTGTTVFQP--GLLAEAH----RGVLYIDEINLLDE------GISNLLLNVLTEGVNIVEREGI 260 (653)
Q Consensus 193 ~~~~~l~G~~d~~~~~~~g~~~~~~--Gll~~A~----~giL~IDEi~~l~~------~~~~~Ll~~l~~g~~~v~r~G~ 260 (653)
++...+.|.++- .+ ...... |.+-.+. ..|+||||+|.-.. .....|.++|+.|.... +.+.
T Consensus 1342 Tta~~l~~~~e~--~~---e~~~~~~~G~~~~p~~~Gk~~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd-~~~~ 1415 (3245)
T 3vkg_A 1342 TTPELLLKTFDH--HC---EYKRTPSGETVLRPTQLGKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWR-TSDH 1415 (3245)
T ss_dssp CCHHHHHHHHHH--HE---EEEECTTSCEEEEESSTTCEEEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEE-TTTT
T ss_pred CCHHHHHHHHhh--cc---eEEeccCCCcccCCCcCCceEEEEecccCCCCccccccccHHHHHHHHHHcCCeEE-CCCC
Confidence 555556665421 11 111111 4433332 24999999998664 38899999999887544 3333
Q ss_pred eEEeecCcEEEEEecCCC--C--cccHHHHhhhcccccccCCCCHhhHHHHHH
Q 006254 261 SFKHPCKPLLIATYNPEE--G--VVREHLLDRIAINLSADLPMTFEDRVAAVG 309 (653)
Q Consensus 261 s~~~p~~~~lIattNp~e--g--~l~~aLldRf~~~v~l~~p~~~~~r~~I~~ 309 (653)
....-.+|.+||||||.. | .+++.|++||.++ .++.| +.+....|..
T Consensus 1416 ~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F~vi-~i~~p-s~esL~~If~ 1466 (3245)
T 3vkg_A 1416 TWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAPIL-LVDFP-STSSLTQIYG 1466 (3245)
T ss_dssp EEEEESSEEEEEEECCTTSTTCCCCCHHHHTTCCEE-ECCCC-CHHHHHHHHH
T ss_pred eEEEecCeEEEEEcCCCCCCCCccCCHHHHhhceEE-EeCCC-CHHHHHHHHH
Confidence 434447899999999863 3 5899999999986 88865 7777777754
No 115
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=98.51 E-value=1.4e-07 Score=111.43 Aligned_cols=94 Identities=15% Similarity=0.146 Sum_probs=70.8
Q ss_pred ccCCceEEEEEeCCCCCChh------HHHHHHHHHHHHHHhHc-CCCCeEEEEEeecCCc-----EE-------------
Q 006254 558 RKAGALVIFVVDASGSMALN------RMQNAKGAALKLLAESY-TCRDQVSIIPFRGDSA-----EV------------- 612 (653)
Q Consensus 558 ~~~~~~v~~vvD~SgSM~~~------r~~~ak~a~~~ll~~ay-~~rd~v~li~F~~~~a-----~~------------- 612 (653)
.+.+..|+||||.||||.+. ||..+|.++..|+.... +.+|+||||+|++... .+
T Consensus 221 ~~~~~DIVfVLD~SGSM~~~~~~~~~Rl~~~K~a~~~~ld~L~~~~~drVgLV~Fs~~a~~~~~~~v~~~~~~~~g~~~n 300 (893)
T 2ww8_A 221 KSVPLDVVILLDNSNSMSNIRNKNARRAERAGEATRSLIDKITSDSENRVALVTYASTIFDGTEFTVEKGVADKNGKRLN 300 (893)
T ss_dssp TTCCEEEEEEEECCGGGCTTHHHHCCHHHHHHHHHHHHHHHHHTSTTCEEEEEEESSSBCBSCEEEEECCEECTTCCEEC
T ss_pred cCCCccEEEEEeCCCCCCCcCccchhHHHHHHHHHHHHHHHhhcCCCcEEEEEEecCccccccccccccccccccccccc
Confidence 45689999999999999762 78899999999985432 3689999999975311 01
Q ss_pred --------------------EcCCCcCHHHH---HHHHhc----------CCCCCCCchHHHHHHHHHHHhh
Q 006254 613 --------------------LLPPSRSIAMA---RKRLER----------LPCGGGSPLAHGLSMGWAKCGE 651 (653)
Q Consensus 613 --------------------~lp~t~~~~~~---~~~L~~----------l~~gG~Tpl~~gl~~a~~~l~~ 651 (653)
.+|+|.+...+ ...|.. +.++|+|+++.||..|.++|..
T Consensus 301 ~~~~w~~~~t~~t~~~~~~~~lpLT~d~~~i~~lk~~I~~~~~~~~G~~~l~~~GGT~i~~AL~~A~~lL~~ 372 (893)
T 2ww8_A 301 DSLFWNYDQTSFTTNTKDYSYLKLTNDKNDIVELKNKVPTEAEDHDGNRLMYQFGATFTQKALMKADEILTQ 372 (893)
T ss_dssp CCTTSCTTCCEEEEECCBCCEEEEECCHHHHHHHHHHSCSCCCCSCTTSGGGGGCSCCHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccCCHHHHHHHHHHHhhhccccccccccccCCCChHHHHHHHHHHHHHh
Confidence 24666666444 466654 3348999999999999999863
No 116
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.47 E-value=1.8e-08 Score=98.01 Aligned_cols=52 Identities=17% Similarity=0.065 Sum_probs=35.3
Q ss_pred CCCCCCceechHH----HHHHHHHhcc-cCC---CceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 90 QFFPLAAVVGQDA----IKTALLLGAI-DRE---IGGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 90 ~~~~f~~IvGq~~----~k~aL~~~av-~p~---~~gVLL~GppGTGKT~lArala~~l~ 141 (653)
...+|+++++.+. ++..+...+- .+. ..+|+|+||+|||||++|++++..+.
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3567888887542 3333322121 111 17899999999999999999999774
No 117
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.44 E-value=5.7e-07 Score=83.88 Aligned_cols=60 Identities=25% Similarity=0.320 Sum_probs=38.8
Q ss_pred CceEEecccccCCHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecC--CCCcccHHHHhhhcccccc
Q 006254 225 RGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP--EEGVVREHLLDRIAINLSA 295 (653)
Q Consensus 225 ~giL~IDEi~~l~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp--~eg~l~~aLldRf~~~v~l 295 (653)
..+|+|||+..++...++.|+..++... + .| ..++|.|+|. .+....+.|.+||.-.+.+
T Consensus 84 ~~lLilDE~~~~~~~~~~~l~~li~~~~---~-~g-------~~~iiits~~~p~~l~~~~~L~SRl~~g~~~ 145 (149)
T 2kjq_A 84 AEYLAVDQVEKLGNEEQALLFSIFNRFR---N-SG-------KGFLLLGSEYTPQQLVIREDLRTRMAYCLVY 145 (149)
T ss_dssp CSEEEEESTTCCCSHHHHHHHHHHHHHH---H-HT-------CCEEEEEESSCTTTSSCCHHHHHHGGGSEEC
T ss_pred CCEEEEeCccccChHHHHHHHHHHHHHH---H-cC-------CcEEEEECCCCHHHccccHHHHHHHhcCeeE
Confidence 4699999999998877888888876432 0 01 1224456663 3333339999999655433
No 118
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.32 E-value=2.7e-06 Score=110.88 Aligned_cols=141 Identities=20% Similarity=0.117 Sum_probs=95.9
Q ss_pred CceEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeEeCCCCCcc
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTE 195 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~l~~~~~~ 195 (653)
..|..+.||+|||||.+++.++..++.. ...|||++. ...
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr~----~~vfnC~~~------------------------------------~d~ 643 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGRF----VLVFCCDEG------------------------------------FDL 643 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTCC----EEEEECSSC------------------------------------CCH
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCCe----EEEEeCCCC------------------------------------CCH
Confidence 3566799999999999999999999742 223566321 111
Q ss_pred cceeeecchhhhhccCCccccccccccccCceEEecccccCCHHHHHHHHHHHH-------cCceEEeeC-CeeEEeecC
Q 006254 196 DRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLT-------EGVNIVERE-GISFKHPCK 267 (653)
Q Consensus 196 ~~l~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEi~~l~~~~~~~Ll~~l~-------~g~~~v~r~-G~s~~~p~~ 267 (653)
..+|.+ -.|+. ..|..+++||||+++.+++..+.+.+. ++...+.=+ |..+.....
T Consensus 644 -~~~g~i-------------~~G~~--~~GaW~cfDEfNrl~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~ 707 (3245)
T 3vkg_A 644 -QAMSRI-------------FVGLC--QCGAWGCFDEFNRLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQD 707 (3245)
T ss_dssp -HHHHHH-------------HHHHH--HHTCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTT
T ss_pred -HHHHHH-------------HhhHh--hcCcEEEehhhhcCCHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCC
Confidence 112211 12322 236789999999999998888766554 444445555 777888889
Q ss_pred cEEEEEecCCC---CcccHHHHhhhcccccccCCCCHhhHHHHHHHHHHH
Q 006254 268 PLLIATYNPEE---GVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQF 314 (653)
Q Consensus 268 ~~lIattNp~e---g~l~~aLldRf~~~v~l~~p~~~~~r~~I~~~~~~~ 314 (653)
+.++.||||.- .+|++.|.+||-.+ .+..| |.+...+|+-....|
T Consensus 708 ~~vfiTmNpgY~gr~eLP~nLk~lFr~v-~m~~P-d~~~i~ei~L~s~Gf 755 (3245)
T 3vkg_A 708 MGIFVTMNPGYAGRSNLPDNLKKLFRSM-AMIKP-DREMIAQVMLYSQGF 755 (3245)
T ss_dssp CEEEECBCCCGGGCCCSCHHHHTTEEEE-ECCSC-CHHHHHHHHHHTTTC
T ss_pred eEEEEEeCCCccCcccChHHHHhhcEEE-EEeCC-CHHHHHHHHHHHccc
Confidence 99999999842 47999999999875 77755 888777776543333
No 119
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=98.28 E-value=3.4e-07 Score=103.07 Aligned_cols=86 Identities=12% Similarity=0.139 Sum_probs=64.3
Q ss_pred cCCceEEEEEeCCCCCCh----hHHHHHHHHHHHHHHhHcCCCCeEEEEEeecCCcEEEcCCCc--CHHHHHHHHhcCCC
Q 006254 559 KAGALVIFVVDASGSMAL----NRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSR--SIAMARKRLERLPC 632 (653)
Q Consensus 559 ~~~~~v~~vvD~SgSM~~----~r~~~ak~a~~~ll~~ay~~rd~v~li~F~~~~a~~~lp~t~--~~~~~~~~L~~l~~ 632 (653)
..+..++|+||+||||.+ +||.. +.++..+....++.+|+|+||+|++ ....+|.|. ++..+.+.|..+ +
T Consensus 366 ~~~~~v~lvvD~SgSM~~~~~~~~l~~-~~~Aa~l~~~~~~~~d~vglv~Fs~--~~~~~~~t~~~~l~~~l~~l~~~-~ 441 (538)
T 1yvr_A 366 PTGKRFLLAIDVSASMNQRVLGSILNA-SVVAAAMCMLVARTEKDSHMVAFSD--EMLPCPITVNMLLHEVVEKMSDI-T 441 (538)
T ss_dssp CCCCCEEEEEECSGGGGSBSTTSSCBH-HHHHHHHHHHHHHHCSSEEEEEESS--SEECCSCCTTSCHHHHHHHHTTC-C
T ss_pred CCCceEEEEEECccccCCCCCCCcHHH-HHHHHHHHHHHhccCCceEEEEECC--CceEcCCCCcccHHHHHHHHhcC-C
Confidence 568899999999999964 45665 5554444445568899999999975 444556554 566666777766 6
Q ss_pred CCCCchHHHHHHHHHH
Q 006254 633 GGGSPLAHGLSMGWAK 648 (653)
Q Consensus 633 gG~Tpl~~gl~~a~~~ 648 (653)
||+|+++.||..|++.
T Consensus 442 ~GgT~i~~aL~~a~~~ 457 (538)
T 1yvr_A 442 MGSTDCALPMLWAQKT 457 (538)
T ss_dssp CSCCCTTHHHHHHHHT
T ss_pred CCCCcHHHHHHHHHhc
Confidence 8999999999999864
No 120
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=98.21 E-value=2.5e-06 Score=96.53 Aligned_cols=89 Identities=15% Similarity=0.199 Sum_probs=68.4
Q ss_pred ceEEEEEeCCCCCCh------hHHHHHHHHHHHHHHh--HcCCCCeEEEEEeecCCc-------------EEEcCCCc-C
Q 006254 562 ALVIFVVDASGSMAL------NRMQNAKGAALKLLAE--SYTCRDQVSIIPFRGDSA-------------EVLLPPSR-S 619 (653)
Q Consensus 562 ~~v~~vvD~SgSM~~------~r~~~ak~a~~~ll~~--ay~~rd~v~li~F~~~~a-------------~~~lp~t~-~ 619 (653)
-.++|+||+|+||.. +||..+|.++..++.. ..+..|+||||.|++... .++.|++. +
T Consensus 8 e~iv~~iDvS~SM~~~d~~~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~~~~~plt~d~~y~~i~vl~~l~~~~ 87 (565)
T 1jey_B 8 AAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLSGGDQYQNITVHRHLMLPD 87 (565)
T ss_dssp EEEEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCTTTCSTTEEEEEEEECCC
T ss_pred eEEEEEEECChHhcccCCCCCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccCCCCCccccccCCCceEEeecCCCCC
Confidence 689999999999943 5999999999999975 468999999999976531 13333332 3
Q ss_pred HHHHHHHHhc-CCCC-CCCchHHHHHHHHHHHhh
Q 006254 620 IAMARKRLER-LPCG-GGSPLAHGLSMGWAKCGE 651 (653)
Q Consensus 620 ~~~~~~~L~~-l~~g-G~Tpl~~gl~~a~~~l~~ 651 (653)
...+ ..|.. +.+| ++|.++.||..|..+|.+
T Consensus 88 ~~~l-~~l~~~l~~~~~~t~i~~al~~A~~~l~~ 120 (565)
T 1jey_B 88 FDLL-EDIESKIQPGSQQADFLDALIVSMDVIQH 120 (565)
T ss_dssp HHHH-HHHHTTCCCCSSCCCHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHhhccCCCccccHHHHHHHHHHHHHH
Confidence 3333 45665 7766 899999999999999865
No 121
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=98.18 E-value=9.4e-07 Score=107.04 Aligned_cols=88 Identities=13% Similarity=0.131 Sum_probs=74.7
Q ss_pred CceEEEEEeCCCCCChhHHHHHHHHHHHHHHhHcCCCCeEEEEEeecCCcEEEcCCCc--CHHHHHHHHhcC-CCCCCCc
Q 006254 561 GALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSR--SIAMARKRLERL-PCGGGSP 637 (653)
Q Consensus 561 ~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~ay~~rd~v~li~F~~~~a~~~lp~t~--~~~~~~~~L~~l-~~gG~Tp 637 (653)
+.+|+||||.||||+..++..+|.++..++......+++||||+|+ ..+.+.+|++. +...+...++.+ ..||+|.
T Consensus 130 ~~DIvfvlD~SgSm~~~~f~~~k~fv~~lv~~~~~~~~rVglV~Fs-~~~~~~~~lt~~~~~~~l~~ai~~i~~~gG~T~ 208 (1095)
T 3k6s_A 130 EQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFS-NKFQTHFTFEEFRRSSNPLSLLASVHQLQGFTY 208 (1095)
T ss_dssp CEEEEEEEECCTTSCSHHHHHHHHHHHHHHHSSCSSSEEEEEEEES-SSEEEEECSHHHHSCSCGGGGTTTCCCCCSCBC
T ss_pred CccEEEEEcCCCCCChhHHHHHHHHHHHHHHhccccccEEEEEEEC-CeEEEEecCcccCCHHHHHHHHhhhhcccCCCh
Confidence 6899999999999998899999999999997766666999999996 56889999885 444556667777 5689999
Q ss_pred hHHHHHHHHHHH
Q 006254 638 LAHGLSMGWAKC 649 (653)
Q Consensus 638 l~~gl~~a~~~l 649 (653)
++.||..|.+.+
T Consensus 209 ~g~AL~~a~~~l 220 (1095)
T 3k6s_A 209 TATAIQNVVHRL 220 (1095)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHHHhh
Confidence 999999998755
No 122
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.14 E-value=4.3e-07 Score=95.02 Aligned_cols=50 Identities=18% Similarity=0.212 Sum_probs=33.6
Q ss_pred CCCCCceechH----HHHHHHH-HhcccC--CCceEEEECCCCCHHHHHHHHHHhhC
Q 006254 91 FFPLAAVVGQD----AIKTALL-LGAIDR--EIGGIAISGRRGTAKTVMARGLHAIL 140 (653)
Q Consensus 91 ~~~f~~IvGq~----~~k~aL~-~~av~p--~~~gVLL~GppGTGKT~lArala~~l 140 (653)
..+|+++++.+ .+..++. ...-.+ ...+|+|+||||||||+||++|+..+
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 46788888633 2233221 111112 15789999999999999999999976
No 123
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.90 E-value=2.9e-05 Score=79.17 Aligned_cols=28 Identities=25% Similarity=0.285 Sum_probs=24.4
Q ss_pred CCCceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 114 REIGGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 114 p~~~gVLL~GppGTGKT~lArala~~l~ 141 (653)
|...+|+|+||||||||++|++|+..++
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhc
Confidence 3456799999999999999999999754
No 124
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.89 E-value=1.5e-05 Score=77.98 Aligned_cols=28 Identities=11% Similarity=0.194 Sum_probs=24.7
Q ss_pred CCCceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 114 REIGGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 114 p~~~gVLL~GppGTGKT~lArala~~l~ 141 (653)
|...++||+||||||||++|.+|++.+.
T Consensus 56 Pkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 56 PKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp TTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred CcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4556899999999999999999999874
No 125
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.75 E-value=4e-05 Score=79.90 Aligned_cols=46 Identities=13% Similarity=0.093 Sum_probs=36.9
Q ss_pred CCceechHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 94 LAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 94 f~~IvGq~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~ 141 (653)
...++|++.....|....-. ...|+|+|++|+|||++++.+.+..+
T Consensus 11 ~~~~~gR~~el~~L~~~l~~--~~~v~i~G~~G~GKT~Ll~~~~~~~~ 56 (350)
T 2qen_A 11 REDIFDREEESRKLEESLEN--YPLTLLLGIRRVGKSSLLRAFLNERP 56 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHH--CSEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred hHhcCChHHHHHHHHHHHhc--CCeEEEECCCcCCHHHHHHHHHHHcC
Confidence 45689999988888543322 26899999999999999999998763
No 126
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=97.73 E-value=1.9e-05 Score=88.68 Aligned_cols=93 Identities=15% Similarity=0.134 Sum_probs=59.1
Q ss_pred hhhhhhc--cCCceEEEEEeCCCCCCh-h-----HHHHHHHHHHHHHHhHcCCCCeEEEEEeecCCcEEEcCCC--cCHH
Q 006254 552 RAKRMAR--KAGALVIFVVDASGSMAL-N-----RMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPS--RSIA 621 (653)
Q Consensus 552 ~~~~~~~--~~~~~v~~vvD~SgSM~~-~-----r~~~ak~a~~~ll~~ay~~rd~v~li~F~~~~a~~~lp~t--~~~~ 621 (653)
+.+.+.. ..+..++++||+||||.+ . |+..+ .++..+.....+..|+++||+|++. -..+|.+ .++.
T Consensus 351 ~~~~~~~~~~~~~~~lv~vDvSgSM~~~~~~~~~k~~~~-e~Aa~la~~~~r~~d~v~lv~Fs~~--~~~~~~~~~~~l~ 427 (535)
T 2nvo_A 351 FTLAFGNVQPANTRHLLALDVSGSMTCGDVAGVPGLTPN-MAAAAMSLIALRTEPDALTMGFAEQ--FRPLGITPRDTLE 427 (535)
T ss_dssp HHHHGGGCCCCCSEEEEEECCSGGGGSCCGGGCTTCCHH-HHHHHHHHHHHHHSSEEEEEEEBSS--EEECCCCTTCCHH
T ss_pred HHHHhhcCCCCCceEEEEEECCccccCCCCCCCCcccHH-HHHHHHHHHHcCcCCceEEEEECCc--ceEcCCCcchhHH
Confidence 3444444 568899999999999954 1 23322 2222333334567899999999762 2234554 3455
Q ss_pred HHHHHHhcCCCCCCCchHHHHHHHHHH
Q 006254 622 MARKRLERLPCGGGSPLAHGLSMGWAK 648 (653)
Q Consensus 622 ~~~~~L~~l~~gG~Tpl~~gl~~a~~~ 648 (653)
.+.+.|...+ +|+|.++.+|..+.+.
T Consensus 428 ~~l~~l~~~~-~ggTdi~~~l~~a~~~ 453 (535)
T 2nvo_A 428 SAMQKAQSVS-FGGTDCAQPILWAAQE 453 (535)
T ss_dssp HHHHHTCCSS-BCCCCTTHHHHHHHHT
T ss_pred HHHHHHhhCC-CCCccHHHHHHHHHHh
Confidence 5555555443 7999999999877653
No 127
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.67 E-value=5.2e-05 Score=73.01 Aligned_cols=58 Identities=12% Similarity=0.195 Sum_probs=40.7
Q ss_pred CceEEecccccCCHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecC---CCCcccHHHHhhhccccccc
Q 006254 225 RGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP---EEGVVREHLLDRIAINLSAD 296 (653)
Q Consensus 225 ~giL~IDEi~~l~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp---~eg~l~~aLldRf~~~v~l~ 296 (653)
..+|+|||++.+++++++.|...++++. .+++.|.+.. ......+.|+.+.+...++.
T Consensus 77 ~dvviIDE~Q~~~~~~~~~l~~l~~~~~--------------~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 77 TRGVFIDEVQFFNPSLFEVVKDLLDRGI--------------DVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp EEEEEECCGGGSCTTHHHHHHHHHHTTC--------------EEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHCCC--------------CEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 4599999999998889898888888764 2445555443 22345577888876665554
No 128
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.66 E-value=3.7e-05 Score=80.31 Aligned_cols=45 Identities=13% Similarity=-0.074 Sum_probs=37.3
Q ss_pred CCCceechHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 93 PLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 93 ~f~~IvGq~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~ 141 (653)
....++|.+.....|.- .- . +.|+|+||+|+|||++++.+.+.+.
T Consensus 11 ~~~~~~gR~~el~~L~~-l~-~--~~v~i~G~~G~GKT~L~~~~~~~~~ 55 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LR-A--PITLVLGLRRTGKSSIIKIGINELN 55 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TC-S--SEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CHHHhcChHHHHHHHHH-hc-C--CcEEEECCCCCCHHHHHHHHHHhcC
Confidence 34678999988888866 33 2 6899999999999999999998764
No 129
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.57 E-value=0.00015 Score=70.73 Aligned_cols=61 Identities=8% Similarity=-0.030 Sum_probs=41.8
Q ss_pred cCceEEecccccC--CH-HHH--HHHHHHHHcCceEEeeCCeeEEeecCcEEEEEecCCCCcccHHHHhhhcccccccC
Q 006254 224 HRGVLYIDEINLL--DE-GIS--NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADL 297 (653)
Q Consensus 224 ~~giL~IDEi~~l--~~-~~~--~~Ll~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~l~~aLldRf~~~v~l~~ 297 (653)
.+.||+|||++.+ +. +.. ..++..++... ...+.+|.++++ +..|+.+|++|+..++.+..
T Consensus 87 ~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r------------~~~~~iil~tq~-~~~l~~~lr~ri~~~~~l~~ 152 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHR------------HQGIDIFVLTQG-PKLLDQNLRTLVRKHYHIAS 152 (199)
T ss_dssp TTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTT------------TTTCEEEEEESC-GGGBCHHHHTTEEEEEEEEE
T ss_pred CceEEEEEChhhhccCccccchhHHHHHHHHhcC------------cCCeEEEEECCC-HHHHhHHHHHHhheEEEEcC
Confidence 3789999999998 32 111 13445554433 113567777785 78899999999999988874
No 130
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.55 E-value=0.0002 Score=75.36 Aligned_cols=126 Identities=13% Similarity=-0.011 Sum_probs=81.5
Q ss_pred CceEEeccccc-CCHHHHHHHHHHHHcCceEEeeCCeeEEeecCcE-EEEEecCCC----CcccHHHHhhhcccccccCC
Q 006254 225 RGVLYIDEINL-LDEGISNLLLNVLTEGVNIVEREGISFKHPCKPL-LIATYNPEE----GVVREHLLDRIAINLSADLP 298 (653)
Q Consensus 225 ~giL~IDEi~~-l~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~-lIattNp~e----g~l~~aLldRf~~~v~l~~p 298 (653)
.-|++|||++. ++.+.++.|+..+++-. ...+ |+.+++++. ..+-+.+..|...+ .+. |
T Consensus 77 ~kvvii~~~~~kl~~~~~~aLl~~le~p~-------------~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~-~~~-~ 141 (343)
T 1jr3_D 77 RQTLLLLLPENGPNAAINEQLLTLTGLLH-------------DDLLLIVRGNKLSKAQENAAWFTALANRSVQV-TCQ-T 141 (343)
T ss_dssp CEEEEEECCSSCCCTTHHHHHHHHHTTCB-------------TTEEEEEEESCCCTTTTTSHHHHHHTTTCEEE-EEC-C
T ss_pred CeEEEEECCCCCCChHHHHHHHHHHhcCC-------------CCeEEEEEcCCCChhhHhhHHHHHHHhCceEE-Eee-C
Confidence 45999999999 99999999999998632 2333 444444332 35667888887544 666 4
Q ss_pred CCHhhHHHHHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 006254 299 MTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVA 378 (653)
Q Consensus 299 ~~~~~r~~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~A 378 (653)
.+..+....+... . ....+.++++++++|++.+ +. +.|..+..+..
T Consensus 142 l~~~~l~~~l~~~-------------------------~----~~~g~~i~~~a~~~l~~~~---~g-dl~~~~~elek- 187 (343)
T 1jr3_D 142 PEQAQLPRWVAAR-------------------------A----KQLNLELDDAANQVLCYCY---EG-NLLALAQALER- 187 (343)
T ss_dssp CCTTHHHHHHHHH-------------------------H----HHTTCEECHHHHHHHHHSS---TT-CHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHH-------------------------H----HHcCCCCCHHHHHHHHHHh---ch-HHHHHHHHHHH-
Confidence 4544333322210 0 1135789999999887654 33 57777766654
Q ss_pred HHHHHHcCCCCccHHHHHHHHHH
Q 006254 379 KCLAALEGREKVNVDDLKKAVEL 401 (653)
Q Consensus 379 ra~Aal~gr~~Vt~eDv~~A~~l 401 (653)
++.+.+...||.+||...+..
T Consensus 188 --l~l~~~~~~It~e~V~~~~~~ 208 (343)
T 1jr3_D 188 --LSLLWPDGKLTLPRVEQAVND 208 (343)
T ss_dssp --HHHHCTTCEECHHHHHHHHHH
T ss_pred --HHHhcCCCCCCHHHHHHHHhh
Confidence 334445568999999988764
No 131
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=97.52 E-value=0.0002 Score=81.63 Aligned_cols=89 Identities=17% Similarity=0.163 Sum_probs=65.0
Q ss_pred ceEEEEEeCCCCCCh-------hHHHHHHHHHHHHHHhH--cCCCCeEEEEEeecCCc---------EEEcCCC-cCHHH
Q 006254 562 ALVIFVVDASGSMAL-------NRMQNAKGAALKLLAES--YTCRDQVSIIPFRGDSA---------EVLLPPS-RSIAM 622 (653)
Q Consensus 562 ~~v~~vvD~SgSM~~-------~r~~~ak~a~~~ll~~a--y~~rd~v~li~F~~~~a---------~~~lp~t-~~~~~ 622 (653)
-.++|+||+|+||.. +|+..|+.++..++... .+..|+||||.|++... .++.|.+ .+...
T Consensus 36 e~ivf~IDvS~SM~~~d~~~~~srl~~a~~~v~~~i~~kii~~~~D~vGlVlfgt~~t~n~l~~d~i~v~~~L~~~~~~~ 115 (609)
T 1jey_A 36 DSLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPGAKR 115 (609)
T ss_dssp EEEEEEEECSGGGGCCCSSSSCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCCTTEEEEEEEECCCHHH
T ss_pred eEEEEEEECCHHHcCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCeEEEEEEccCCCCCcCCCCCeEEEecCCCCCHHH
Confidence 459999999999943 49999999999999652 47889999999976541 3444443 23333
Q ss_pred HHHHHhcC-------------CCCCCCchHHHHHHHHHHHhh
Q 006254 623 ARKRLERL-------------PCGGGSPLAHGLSMGWAKCGE 651 (653)
Q Consensus 623 ~~~~L~~l-------------~~gG~Tpl~~gl~~a~~~l~~ 651 (653)
++ .|..+ +.+++|+++.||..|..+|.+
T Consensus 116 ik-~l~~l~~~~~~~~~~~~~g~~~~t~l~daL~~a~~~f~~ 156 (609)
T 1jey_A 116 IL-ELDQFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSD 156 (609)
T ss_dssp HH-HHHTTSHHHHHHHHHHHHCCSCCCCHHHHHHHHHHHHHT
T ss_pred HH-HHHHHhhcccchhhhhhcCCCCCCCHHHHHHHHHHHHHh
Confidence 32 22222 336899999999999999865
No 132
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.32 E-value=0.00012 Score=80.56 Aligned_cols=53 Identities=15% Similarity=0.220 Sum_probs=38.3
Q ss_pred CCCCCCCCcee-chHHHHHHHHHhcccCCCceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 88 GRQFFPLAAVV-GQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 88 ~~~~~~f~~Iv-Gq~~~k~aL~~~av~p~~~gVLL~GppGTGKT~lArala~~l~ 141 (653)
+.++.+|+.+- +|..+...++-.+-. ..+.++|.|++|||||+++..++..+.
T Consensus 17 ~~~p~~~~~Ln~~Q~~av~~~~~~i~~-~~~~~li~G~aGTGKT~ll~~~~~~l~ 70 (459)
T 3upu_A 17 RGSHMTFDDLTEGQKNAFNIVMKAIKE-KKHHVTINGPAGTGATTLTKFIIEALI 70 (459)
T ss_dssp ----CCSSCCCHHHHHHHHHHHHHHHS-SSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ccCCCccccCCHHHHHHHHHHHHHHhc-CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 45677888876 777777776544332 335899999999999999999998773
No 133
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=97.15 E-value=0.00084 Score=65.95 Aligned_cols=74 Identities=14% Similarity=0.160 Sum_probs=58.1
Q ss_pred CceEEEEEeCCCCCChhHHHHHHHHHHHHHHhH--cCCCCeEEEEEeecCCcEEEcCCCcCHHHHHHHHhcCCCCCC
Q 006254 561 GALVIFVVDASGSMALNRMQNAKGAALKLLAES--YTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPCGGG 635 (653)
Q Consensus 561 ~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~a--y~~rd~v~li~F~~~~a~~~lp~t~~~~~~~~~L~~l~~gG~ 635 (653)
+..++||+|+||||+.. ++.+|..+..|+... ....-|+|++.|....-...+|.|.+.......|..+..+|+
T Consensus 3 pvDl~fl~D~S~SM~~d-i~~lk~~~~~l~~~l~~~~~~~r~Gfg~f~Dk~~~~~l~lT~d~~~F~~~v~~~~vsg~ 78 (212)
T 2iue_A 3 SVDLYFLMGLSGSAQGH-LSNVQTLGSDLLKALNEISRSGRIGFGSIVNMTFQHILKLTADSSQFQRELRKQLVSGK 78 (212)
T ss_dssp CEEEEEEEECCGGGTTT-HHHHHHHHHHHHHHHHHHCSCEEEEEEEESSSCEEEEEEEESCHHHHHHHHHTCCCCCC
T ss_pred ceEEEEEEeCCCcchhH-HHHHHHHHHHHHHHHHhhCcCceEEEEEEEcCcceecCCcCCCHHHHHHHHhhccccCC
Confidence 67899999999999852 555566666555433 467889999999765556689999999999999999877665
No 134
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.98 E-value=0.00074 Score=76.37 Aligned_cols=26 Identities=15% Similarity=0.308 Sum_probs=23.0
Q ss_pred CceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.+.++|.|+||||||++++++...+.
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~ 229 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAE 229 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46799999999999999999988753
No 135
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.96 E-value=0.0012 Score=62.93 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=22.0
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
.+.|.||+|+||||+++.|+..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999885
No 136
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.65 E-value=0.0018 Score=67.57 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.6
Q ss_pred ceEEEECCCCCHHHHHHHHHHhh
Q 006254 117 GGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (653)
..++|+||||||||+||..++..
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 44899999999999999999875
No 137
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.60 E-value=0.0032 Score=62.40 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=21.7
Q ss_pred CceEEecccccCCHHHHHHHHHHHHcC
Q 006254 225 RGVLYIDEINLLDEGISNLLLNVLTEG 251 (653)
Q Consensus 225 ~giL~IDEi~~l~~~~~~~Ll~~l~~g 251 (653)
..+|+|||++.++.++++.|..+.+.+
T Consensus 90 ~dvViIDEaQ~l~~~~ve~l~~L~~~g 116 (223)
T 2b8t_A 90 TKVIGIDEVQFFDDRICEVANILAENG 116 (223)
T ss_dssp CCEEEECSGGGSCTHHHHHHHHHHHTT
T ss_pred CCEEEEecCccCcHHHHHHHHHHHhCC
Confidence 469999999999988888776666654
No 138
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.39 E-value=0.0096 Score=63.18 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=23.5
Q ss_pred CceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.+-|+|.||+|+||||+.+++...++
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccc
Confidence 34699999999999999999999875
No 139
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.38 E-value=0.0063 Score=69.25 Aligned_cols=25 Identities=40% Similarity=0.296 Sum_probs=21.5
Q ss_pred CceEEEECCCCCHHHHHHHHHHhhC
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAIL 140 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l 140 (653)
.+-++|.|+||||||+++..+...+
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 4679999999999999988877665
No 140
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.09 E-value=0.0039 Score=78.01 Aligned_cols=22 Identities=23% Similarity=0.299 Sum_probs=20.5
Q ss_pred EEEECCCCCHHHHHHHHHHhhC
Q 006254 119 IAISGRRGTAKTVMARGLHAIL 140 (653)
Q Consensus 119 VLL~GppGTGKT~lArala~~l 140 (653)
+||+||||||||++|++++...
T Consensus 1085 ~l~~G~~g~GKT~la~~~~~~~ 1106 (1706)
T 3cmw_A 1085 VEIYGPESSGKTTLTLQVIAAA 1106 (1706)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHh
Confidence 9999999999999999999754
No 141
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.88 E-value=0.004 Score=58.36 Aligned_cols=24 Identities=29% Similarity=0.529 Sum_probs=22.5
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|+|.|++|+||||+++.|++.++
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 589999999999999999999885
No 142
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.65 E-value=0.015 Score=57.62 Aligned_cols=26 Identities=12% Similarity=-0.065 Sum_probs=22.0
Q ss_pred CceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.-.|++.|++|+|||+++-.++..+.
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~ 31 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQL 31 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 34599999999999999888887763
No 143
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.57 E-value=0.0085 Score=57.71 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=21.9
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-+.|.|++|+||||+.+.|+..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 478999999999999999999874
No 144
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.56 E-value=0.0062 Score=56.72 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=22.9
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.-|+|.|++|+||||+++.|+..++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3589999999999999999999875
No 145
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.50 E-value=0.0058 Score=56.64 Aligned_cols=24 Identities=25% Similarity=0.189 Sum_probs=22.0
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|+|.|++|+||||+++.|++.++
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999875
No 146
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=95.45 E-value=0.021 Score=56.79 Aligned_cols=25 Identities=24% Similarity=0.062 Sum_probs=21.9
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
..++|.||+|+|||.++-.++..+.
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~~ 133 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINELS 133 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSC
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcC
Confidence 4599999999999999998888764
No 147
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.29 E-value=0.035 Score=53.48 Aligned_cols=28 Identities=25% Similarity=0.508 Sum_probs=22.3
Q ss_pred CceEEecccccCCHHHHHHHHHHHHcCc
Q 006254 225 RGVLYIDEINLLDEGISNLLLNVLTEGV 252 (653)
Q Consensus 225 ~giL~IDEi~~l~~~~~~~Ll~~l~~g~ 252 (653)
-.+|+|||++.++++.++.|..+.+.+.
T Consensus 82 ~dvViIDEaqfl~~~~v~~l~~l~~~~~ 109 (191)
T 1xx6_A 82 TEVIAIDEVQFFDDEIVEIVNKIAESGR 109 (191)
T ss_dssp CSEEEECSGGGSCTHHHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3599999999998888887777666653
No 148
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.22 E-value=0.008 Score=56.35 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=22.3
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
.|+|.|++|+||||+++.|+..++
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999999875
No 149
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.21 E-value=0.0082 Score=56.64 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=22.9
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
..|+|.|++|+||||+++.|+..++
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999999875
No 150
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.11 E-value=0.0097 Score=55.49 Aligned_cols=21 Identities=33% Similarity=0.322 Sum_probs=19.8
Q ss_pred eEEEECCCCCHHHHHHHHHHh
Q 006254 118 GIAISGRRGTAKTVMARGLHA 138 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~ 138 (653)
-|+|.|+||+||||+++.|+.
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 489999999999999999998
No 151
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.00 E-value=0.01 Score=57.11 Aligned_cols=26 Identities=23% Similarity=0.370 Sum_probs=23.4
Q ss_pred CceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~ 141 (653)
...|+|.|++|+||||+++.|++.++
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 34699999999999999999999875
No 152
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.95 E-value=0.015 Score=53.98 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=22.7
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
..|+|.|.+|+||||+++.|++.++
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999999774
No 153
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.91 E-value=0.012 Score=54.12 Aligned_cols=23 Identities=30% Similarity=0.289 Sum_probs=20.2
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|+|.|++|+||||+++.| ..++
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g 25 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERG 25 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTT
T ss_pred EEEEECCCCCCHHHHHHHH-HHCC
Confidence 4789999999999999999 6654
No 154
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.89 E-value=0.011 Score=55.66 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=22.1
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|+|.|+||+||||+++.|+..++
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999999775
No 155
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.84 E-value=0.012 Score=55.33 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=22.8
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
..|+|.|++|+||||+++.|+..++
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 4599999999999999999998874
No 156
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.81 E-value=0.012 Score=55.51 Aligned_cols=24 Identities=17% Similarity=0.171 Sum_probs=22.1
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|+|.|++|+||||+++.|+..++
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999774
No 157
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.78 E-value=0.011 Score=55.83 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=22.1
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|+|.|++|+||||+++.|++.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999999875
No 158
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.77 E-value=0.012 Score=56.43 Aligned_cols=25 Identities=20% Similarity=0.409 Sum_probs=22.6
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.-|+|.|++|+||||+++.|+..++
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3599999999999999999999874
No 159
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.75 E-value=0.013 Score=54.33 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=22.2
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|+|.|++|+||||+++.|+..++
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999875
No 160
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.74 E-value=0.015 Score=56.44 Aligned_cols=24 Identities=13% Similarity=0.196 Sum_probs=21.8
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
.|+|.|+||+||||+++.|++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999998875
No 161
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.71 E-value=0.012 Score=55.68 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=22.4
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.-|+|.|+||+||||+++.|+..++
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999999764
No 162
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.68 E-value=0.012 Score=55.10 Aligned_cols=24 Identities=46% Similarity=0.481 Sum_probs=18.3
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|+|.|++|+||||+++.|++.++
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp EEEEECCC----CHHHHHHHHHST
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 589999999999999999999875
No 163
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.66 E-value=0.014 Score=58.73 Aligned_cols=24 Identities=25% Similarity=0.032 Sum_probs=21.9
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|+|.|++|+||||+|+.|+..++
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 478999999999999999999875
No 164
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.66 E-value=0.014 Score=54.96 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=21.8
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|+|.|++|+||||+++.|++.++
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998764
No 165
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.61 E-value=0.015 Score=54.87 Aligned_cols=24 Identities=13% Similarity=0.113 Sum_probs=21.9
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|+|.|+||+||||+++.|+..++
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998764
No 166
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.57 E-value=0.014 Score=56.02 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=23.0
Q ss_pred CceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~ 141 (653)
..-|.|.|++|+||||+++.|+..++
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34588999999999999999999874
No 167
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.54 E-value=0.016 Score=55.65 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=22.1
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|+|.|+||+||||+++.|+..++
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 499999999999999999999774
No 168
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.54 E-value=0.022 Score=54.01 Aligned_cols=25 Identities=44% Similarity=0.385 Sum_probs=22.4
Q ss_pred CceEEEECCCCCHHHHHHHHHHhhC
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAIL 140 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l 140 (653)
...|+|.|++|+||||+++.|++.+
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l 34 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAEL 34 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3469999999999999999999983
No 169
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.53 E-value=0.013 Score=55.37 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.5
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAIL 140 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l 140 (653)
.-++|.|++|+||||+++.|+..+
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCS
T ss_pred eEEEEECCCCCCHHHHHHHHHhcc
Confidence 348999999999999999999873
No 170
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.53 E-value=0.015 Score=56.21 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=21.6
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
.|+|.|+||+||||+++.|++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999988764
No 171
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.52 E-value=0.016 Score=55.57 Aligned_cols=24 Identities=29% Similarity=0.293 Sum_probs=22.3
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|+|.|++|+||||+++.|++.++
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 489999999999999999999875
No 172
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.43 E-value=0.016 Score=55.67 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=22.6
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.-|+|.|++|+||||+++.|+..++
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~g 54 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADETG 54 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhC
Confidence 4589999999999999999999874
No 173
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.39 E-value=0.02 Score=55.17 Aligned_cols=25 Identities=16% Similarity=0.389 Sum_probs=22.7
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.-|+|.|++|+||||+++.|+..++
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCc
Confidence 3489999999999999999999885
No 174
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.39 E-value=0.021 Score=53.99 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=22.6
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.-+.|.||+|+||||+++.|...++
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3589999999999999999999875
No 175
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.38 E-value=0.017 Score=53.96 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=22.3
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.-|+|.|++|+||||+++.|+..++
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhC
Confidence 3489999999999999999998764
No 176
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.36 E-value=0.018 Score=53.17 Aligned_cols=24 Identities=21% Similarity=0.144 Sum_probs=21.9
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
.|+|.|++|+||||+++.|++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999765
No 177
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.36 E-value=0.018 Score=54.81 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=22.1
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|+|.|++|+||||+++.|++.++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 378999999999999999999875
No 178
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.35 E-value=0.016 Score=54.82 Aligned_cols=25 Identities=16% Similarity=0.146 Sum_probs=22.7
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.-|+|.|++|+||||+++.|++.++
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4599999999999999999998775
No 179
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.33 E-value=0.016 Score=54.95 Aligned_cols=25 Identities=24% Similarity=0.146 Sum_probs=22.7
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.-|+|.|++|+||||+++.|++.++
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3599999999999999999999875
No 180
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.31 E-value=0.021 Score=54.49 Aligned_cols=24 Identities=33% Similarity=0.376 Sum_probs=22.2
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-+.|.||+|+||||+++.|+..++
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhhCC
Confidence 488999999999999999999876
No 181
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.31 E-value=0.13 Score=50.32 Aligned_cols=27 Identities=26% Similarity=0.481 Sum_probs=21.9
Q ss_pred ceEEecccccCCHHHHHHHHHHHHcCc
Q 006254 226 GVLYIDEINLLDEGISNLLLNVLTEGV 252 (653)
Q Consensus 226 giL~IDEi~~l~~~~~~~Ll~~l~~g~ 252 (653)
.+|+|||++-+++++++.|..+.+.+.
T Consensus 103 dvViIDEaQF~~~~~V~~l~~l~~~~~ 129 (214)
T 2j9r_A 103 DVIAIDEVQFFDGDIVEVVQVLANRGY 129 (214)
T ss_dssp CEEEECCGGGSCTTHHHHHHHHHHTTC
T ss_pred CEEEEECcccCCHHHHHHHHHHhhCCC
Confidence 599999999999888877766666654
No 182
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.23 E-value=0.045 Score=69.49 Aligned_cols=25 Identities=20% Similarity=0.130 Sum_probs=22.1
Q ss_pred CceEEEECCCCCHHHHHHHHHHhhC
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAIL 140 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l 140 (653)
..+|+|+||||||||+||.+++...
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea 1451 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAA 1451 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4569999999999999999998764
No 183
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.22 E-value=0.02 Score=55.75 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=22.6
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.-|+|.|+||+||||+++.|+..+.
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999999875
No 184
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.21 E-value=0.018 Score=54.19 Aligned_cols=24 Identities=13% Similarity=0.141 Sum_probs=22.0
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|+|.|++|+||||+++.|+..++
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998765
No 185
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.19 E-value=0.021 Score=55.97 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=22.7
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.-|+|.|++|+||||+++.|++.++
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4599999999999999999998875
No 186
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.08 E-value=0.021 Score=58.64 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=22.0
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|+|.|+||+||||+++.|+..++
T Consensus 35 livl~G~sGsGKSTla~~L~~~~~ 58 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFEETQ 58 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998874
No 187
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.08 E-value=0.028 Score=54.02 Aligned_cols=25 Identities=40% Similarity=0.559 Sum_probs=23.0
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.+|+|.||+|+|||||++.|....|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 5799999999999999999998876
No 188
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.05 E-value=0.026 Score=54.00 Aligned_cols=24 Identities=21% Similarity=0.153 Sum_probs=22.0
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|+|.|++|+||||+++.|++.++
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999998875
No 189
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.05 E-value=0.02 Score=55.86 Aligned_cols=25 Identities=16% Similarity=0.135 Sum_probs=22.9
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.-|+|.|++|+||||+++.|++.++
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4599999999999999999999875
No 190
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.02 E-value=0.023 Score=55.27 Aligned_cols=25 Identities=24% Similarity=0.415 Sum_probs=22.3
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.-|.|.|++|+||||+++.|+..++
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3589999999999999999998764
No 191
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.01 E-value=0.032 Score=54.09 Aligned_cols=27 Identities=19% Similarity=0.091 Sum_probs=23.6
Q ss_pred CceEEEECCCCCHHHHHHHHHHhhCCC
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~~ 142 (653)
..-|.|.||+|+||||+++.|+..+++
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 345899999999999999999998863
No 192
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.90 E-value=0.025 Score=53.98 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=22.5
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.-|.|.|++|+||||+++.|+..+.
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~~ 31 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDPS 31 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 3589999999999999999999873
No 193
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=93.87 E-value=0.11 Score=60.60 Aligned_cols=89 Identities=19% Similarity=0.126 Sum_probs=64.8
Q ss_pred cCCceEEEEEeCCCCCChhHHHHHHHHHHHHHHhHcCCCCeEEEEEeecCCcEE--------------------------
Q 006254 559 KAGALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEV-------------------------- 612 (653)
Q Consensus 559 ~~~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~ay~~rd~v~li~F~~~~a~~-------------------------- 612 (653)
..+..++||||+|.+ ..++..+|.++...| +....+.+||||+|++. ..+
T Consensus 130 p~pp~~vFvIDvS~~--a~~l~~l~~si~~~L-~~Lp~~~~VGlITf~~~-v~~y~l~~~~~~~~~vf~G~k~~~~~q~~ 205 (769)
T 2nut_A 130 QMPLIFLYVVDTCME--DEDLQALKESMQMSL-SLLPPTALVGLITFGRM-VQVHELGCEGISKSYVFRGTKDLSAKQLQ 205 (769)
T ss_dssp CCCCEEEEEEECCSC--HHHHHHHHHHHHHHH-TTSCTTCEEEEEEESSE-EEEEESSCCSSCEEEEEETTSCCCSHHHH
T ss_pred CCCCEEEEEEECCcc--HHHHHHHHHHHHHHH-HhCCCCceEEEEEeCCE-EEEEeCCCCCCccceeecCCccccHHHHH
Confidence 347789999999998 457899999999998 45678899999999532 222
Q ss_pred --E-c------------------CC-------CcCHHHHHHHHhcCCC---------CCCCchHHHHHHHHHHHhh
Q 006254 613 --L-L------------------PP-------SRSIAMARKRLERLPC---------GGGSPLAHGLSMGWAKCGE 651 (653)
Q Consensus 613 --~-l------------------p~-------t~~~~~~~~~L~~l~~---------gG~Tpl~~gl~~a~~~l~~ 651 (653)
+ + |. +.....+...|+.|+. .+.+.++.||..|..+|+.
T Consensus 206 ~ml~v~d~~~~~~~~~~~~~f~~p~~~~lv~~~e~~~~i~~lLe~L~~~~~~~~~~~~~~~a~G~Al~~A~~lL~~ 281 (769)
T 2nut_A 206 EMLGLSKVPVTQATRGPQVQQPPPSNRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLEC 281 (769)
T ss_dssp HHHC-------------------CCCSSSEEHHHHHHHHHHHHHHCCCCSSCCCTTBCCCCCHHHHHHHHHHHHHH
T ss_pred HHhCCCCcccccccccccccCCCcccceeeeHHHHHHHHHHHHHhcccccccccCCCCCccchHHHHHHHHHHHhh
Confidence 0 1 11 1123345567787776 5778999999999999873
No 194
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.86 E-value=0.021 Score=57.26 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=22.3
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|+|.|+||+||||+++.|+..++
T Consensus 34 ~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp EEEEESCGGGTTHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 499999999999999999999875
No 195
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.81 E-value=0.026 Score=55.58 Aligned_cols=25 Identities=20% Similarity=0.117 Sum_probs=22.7
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
..|+|.|++|+||||+++.|++.+.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3599999999999999999999875
No 196
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=93.75 E-value=0.046 Score=62.80 Aligned_cols=76 Identities=12% Similarity=0.135 Sum_probs=53.5
Q ss_pred cCCceEEEEEeCCCCCChhHHHHHHHHHHHHHHh--HcCCCCeEEEEEeecC----------------------------
Q 006254 559 KAGALVIFVVDASGSMALNRMQNAKGAALKLLAE--SYTCRDQVSIIPFRGD---------------------------- 608 (653)
Q Consensus 559 ~~~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~--ay~~rd~v~li~F~~~---------------------------- 608 (653)
.-+..++||+|+|+||.. =|+.+|.....|+.. .....-|+|++.|...
T Consensus 109 ~~pvDly~LmD~S~SM~d-di~~lk~l~~~l~~~l~~~t~~~r~Gfgsf~Dk~~~P~~~~~p~~~~~~pc~~~~~~c~~~ 187 (690)
T 3fcs_B 109 DYPVDIYYLMDLSYSMKD-DLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPEALENPCYDMKTTCLPM 187 (690)
T ss_dssp TCCEEEEEEEECSGGGHH-HHHHTTTTTHHHHHHHHHHCSCEEEEEEEECCCSSTTTSCCCSTTTTTCTTSSSSSCCCCC
T ss_pred CCCccEEEEecCCcchHH-HHHHHHHHHHHHHHHHHhhCcCceEEeEEeeccccCCccccChhhhccCCCcCCCCCCCCC
Confidence 347999999999999974 233334444444322 2467889999999531
Q ss_pred -CcEEEcCCCcCHHHHHHHHhcCCCCCC
Q 006254 609 -SAEVLLPPSRSIAMARKRLERLPCGGG 635 (653)
Q Consensus 609 -~a~~~lp~t~~~~~~~~~L~~l~~gG~ 635 (653)
....+|++|.+.....+.|..+...|+
T Consensus 188 f~f~~~l~lt~~~~~f~~~v~~~~isgn 215 (690)
T 3fcs_B 188 FGYKHVLTLTDQVTRFNEEVKKQSVSRN 215 (690)
T ss_dssp CSEEEEEEEESCHHHHHHHHTTCCCCCC
T ss_pred ccceeecccCCCHHHHHHHhhceeccCC
Confidence 112357889999999999998877665
No 197
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.72 E-value=0.032 Score=53.25 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=22.5
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.-|.|.|++|+||||+++.|++.++
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~ 29 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIP 29 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHC
Confidence 3589999999999999999999873
No 198
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.71 E-value=0.028 Score=54.77 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=21.4
Q ss_pred EEEECCCCCHHHHHHHHHHhhCC
Q 006254 119 IAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (653)
|+|.||||+||+|.|+.|++.+.
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 78999999999999999999874
No 199
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=93.70 E-value=0.055 Score=60.72 Aligned_cols=48 Identities=21% Similarity=0.167 Sum_probs=36.9
Q ss_pred CCCCCceechHHHHHHHHHhcc--cCCCceEEEECCCCCHHHHHHHHHHh
Q 006254 91 FFPLAAVVGQDAIKTALLLGAI--DREIGGIAISGRRGTAKTVMARGLHA 138 (653)
Q Consensus 91 ~~~f~~IvGq~~~k~aL~~~av--~p~~~gVLL~GppGTGKT~lArala~ 138 (653)
|.+...+||.+.....|.-.+. ....+-|+|+|++|.|||+||+.++.
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 3445779999998888854433 22345599999999999999999865
No 200
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.70 E-value=0.029 Score=55.93 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=22.5
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.-|+|.|+||+||||+++.|++.++
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4599999999999999999998764
No 201
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.70 E-value=0.028 Score=53.25 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=20.9
Q ss_pred EEEECCCCCHHHHHHHHHHhhC
Q 006254 119 IAISGRRGTAKTVMARGLHAIL 140 (653)
Q Consensus 119 VLL~GppGTGKT~lArala~~l 140 (653)
|.|.|++|+||||+++.|++.+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999987
No 202
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.69 E-value=0.027 Score=53.05 Aligned_cols=22 Identities=41% Similarity=0.514 Sum_probs=20.9
Q ss_pred EEEECCCCCHHHHHHHHHHhhC
Q 006254 119 IAISGRRGTAKTVMARGLHAIL 140 (653)
Q Consensus 119 VLL~GppGTGKT~lArala~~l 140 (653)
|.|.|++|+||||+++.|++.+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999977
No 203
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.69 E-value=0.028 Score=54.70 Aligned_cols=25 Identities=12% Similarity=0.151 Sum_probs=22.6
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
..|+|.|+||+||||+++.|++.+.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4589999999999999999999874
No 204
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.68 E-value=0.025 Score=54.37 Aligned_cols=25 Identities=20% Similarity=0.161 Sum_probs=22.4
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.-|+|.|++|+||||+++.|++.++
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3499999999999999999999764
No 205
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.65 E-value=0.029 Score=55.67 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=22.0
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.-|+|.|++|+||||+++.|++.++
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999996653
No 206
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.62 E-value=0.032 Score=52.81 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=20.1
Q ss_pred EEEECCCCCHHHHHHHHHHhhC
Q 006254 119 IAISGRRGTAKTVMARGLHAIL 140 (653)
Q Consensus 119 VLL~GppGTGKT~lArala~~l 140 (653)
++|.||+|+||||+++.|+..+
T Consensus 5 i~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCcHHHHHHHHhccc
Confidence 7899999999999999998754
No 207
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.59 E-value=0.03 Score=54.87 Aligned_cols=24 Identities=21% Similarity=0.236 Sum_probs=21.8
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|+|.|++|+||||+++.|+..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999999774
No 208
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.57 E-value=0.031 Score=55.06 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=22.2
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.-|+|.||||+||+|.|+.|++.+.
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHC
Confidence 3478899999999999999999874
No 209
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.56 E-value=0.028 Score=54.54 Aligned_cols=24 Identities=17% Similarity=0.050 Sum_probs=21.8
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
.|+|.|+||+||||+++.|++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 379999999999999999999764
No 210
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.54 E-value=0.031 Score=52.77 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=22.5
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.-|+|.|++|+||||+++.|+..+.
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3489999999999999999999874
No 211
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.52 E-value=0.034 Score=52.77 Aligned_cols=24 Identities=42% Similarity=0.596 Sum_probs=22.1
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-+.|.||+|+||||+++.|...++
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 478999999999999999999886
No 212
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.41 E-value=0.029 Score=53.91 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=22.4
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.-|+|.|++|+||||+++.|++.++
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3599999999999999999999764
No 213
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=93.39 E-value=0.23 Score=55.57 Aligned_cols=59 Identities=17% Similarity=0.286 Sum_probs=42.2
Q ss_pred eEEecccccC----CHHHHHHHHHHHHcCceEEeeCCeeEEeecCcEE-EEEecCCCCcccHHHHhhhcccccccC
Q 006254 227 VLYIDEINLL----DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLL-IATYNPEEGVVREHLLDRIAINLSADL 297 (653)
Q Consensus 227 iL~IDEi~~l----~~~~~~~Ll~~l~~g~~~v~r~G~s~~~p~~~~l-IattNp~eg~l~~aLldRf~~~v~l~~ 297 (653)
+|+|||+..+ +..+.+.|..++..|+- ..+.| ++|-.|.-..++..+++-|..+|.+..
T Consensus 346 vvVIDE~~~L~~~~~~~~~~~L~~Iar~GRa------------~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv 409 (574)
T 2iut_A 346 VVVVDEFADMMMIVGKKVEELIARIAQKARA------------AGIHLILATQRPSVDVITGLIKANIPTRIAFQV 409 (574)
T ss_dssp EEEESCCTTHHHHTCHHHHHHHHHHHHHCTT------------TTEEEEEEESCCCTTTSCHHHHHTCCEEEEECC
T ss_pred EEEEeCHHHHhhhhhHHHHHHHHHHHHHHhh------------CCeEEEEEecCcccccccHHHHhhhccEEEEEc
Confidence 7899999866 56677788888888761 23344 455455555788889998888877764
No 214
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.37 E-value=0.031 Score=54.25 Aligned_cols=28 Identities=25% Similarity=0.106 Sum_probs=24.7
Q ss_pred CCCceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 114 REIGGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 114 p~~~gVLL~GppGTGKT~lArala~~l~ 141 (653)
....+|+|.||+|+|||++|..|+....
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 3456799999999999999999999875
No 215
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.37 E-value=0.033 Score=56.02 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=21.4
Q ss_pred eEEEECCCCCHHHHHHHHHHhhC
Q 006254 118 GIAISGRRGTAKTVMARGLHAIL 140 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l 140 (653)
-|+|.|+||+||||+++.|+..+
T Consensus 6 lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999975
No 216
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.36 E-value=0.028 Score=54.32 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=22.7
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.-|.|.||+|+|||||++.|+..++
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3488999999999999999999875
No 217
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.36 E-value=0.036 Score=58.20 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=22.6
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|+|.||+|+|||+|+..|++.++
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTSC
T ss_pred eEEEECCCCCCHHHHHHHHHHHCC
Confidence 589999999999999999999886
No 218
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=93.34 E-value=0.23 Score=48.68 Aligned_cols=28 Identities=25% Similarity=0.490 Sum_probs=24.4
Q ss_pred CceEEecccccCCHHHHHHHHHHHHcCc
Q 006254 225 RGVLYIDEINLLDEGISNLLLNVLTEGV 252 (653)
Q Consensus 225 ~giL~IDEi~~l~~~~~~~Ll~~l~~g~ 252 (653)
--+|+|||+.-+++++++.|..+.+.|.
T Consensus 102 ~dvV~IDEaQFf~~~~v~~l~~la~~gi 129 (219)
T 3e2i_A 102 VDVIGIDEVQFFDDEIVSIVEKLSADGH 129 (219)
T ss_dssp CSEEEECCGGGSCTHHHHHHHHHHHTTC
T ss_pred CCEEEEechhcCCHHHHHHHHHHHHCCC
Confidence 3599999999999999999998887665
No 219
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.22 E-value=0.047 Score=52.45 Aligned_cols=25 Identities=40% Similarity=0.538 Sum_probs=22.4
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILPP 142 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~~ 142 (653)
-|.|.|++|+||||+++.|+..++.
T Consensus 23 ~i~i~G~~GsGKSTl~~~L~~~~~~ 47 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNLQKHLPN 47 (207)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC
Confidence 3889999999999999999998753
No 220
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=93.13 E-value=0.095 Score=57.09 Aligned_cols=77 Identities=12% Similarity=0.135 Sum_probs=54.9
Q ss_pred ccCCceEEEEEeCCCCCChhHHHHHHHHHHHHHHh--HcCCCCeEEEEEeecCC--------------------------
Q 006254 558 RKAGALVIFVVDASGSMALNRMQNAKGAALKLLAE--SYTCRDQVSIIPFRGDS-------------------------- 609 (653)
Q Consensus 558 ~~~~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~--ay~~rd~v~li~F~~~~-------------------------- 609 (653)
..-+..++||+|.|+||.. =++.+|.....|+.. .....-|+|+..|....
T Consensus 108 ~~ypvDLy~LmDlS~SM~d-dl~~lk~lg~~L~~~l~~~t~~~riGfgsFvDk~v~P~~~~~p~~~l~nPc~~~~~~c~p 186 (472)
T 3t3p_B 108 EDYPVDIYYLMDLSYSMKD-DLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPEALENPCYDMKTTCLP 186 (472)
T ss_dssp SSCCEEEEEEEECSGGGHH-HHHHTTTHHHHHHHHHTTTCSCEEEEEEEECCCSSTTTSCCCSHHHHHCTTTTTTSCCCC
T ss_pred CCCCceEEEEEccCcchHH-HHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeccccCccccCChhhhhcCCCcccccCCCC
Confidence 3458999999999999974 344445555555433 24578899999995320
Q ss_pred ---cEEEcCCCcCHHHHHHHHhcCCCCCC
Q 006254 610 ---AEVLLPPSRSIAMARKRLERLPCGGG 635 (653)
Q Consensus 610 ---a~~~lp~t~~~~~~~~~L~~l~~gG~ 635 (653)
-..+||.|.+.......+......|+
T Consensus 187 ~f~fr~~l~LT~d~~~F~~~V~~~~iSGn 215 (472)
T 3t3p_B 187 MFGYKHVLTLTDQVTRFNEEVKKQSVSRN 215 (472)
T ss_dssp CCSEEEEEEEESCHHHHHHHHHHCCCCCC
T ss_pred CcceeEeeccCCCHHHHHHHHhhccccCC
Confidence 11267889999999999988876655
No 221
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.09 E-value=0.04 Score=52.73 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=20.9
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|.|.|++|+||||+++.|+. ++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g 25 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LG 25 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TT
T ss_pred EEEEECCCCcCHHHHHHHHHH-CC
Confidence 488999999999999999999 53
No 222
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.07 E-value=0.041 Score=52.50 Aligned_cols=24 Identities=29% Similarity=0.392 Sum_probs=22.1
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|.|.|++|+||||+++.|+..++
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 588999999999999999999775
No 223
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.05 E-value=0.042 Score=51.54 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=21.8
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|.|.|++|+||||+++.|+..+.
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 488999999999999999999873
No 224
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.01 E-value=0.05 Score=52.51 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=23.1
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILPP 142 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~ 142 (653)
.-+.|.||+|+||||+++.|+.+++.
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~~~ 46 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERIPN 46 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 34889999999999999999999863
No 225
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*
Probab=92.98 E-value=0.14 Score=55.35 Aligned_cols=77 Identities=16% Similarity=0.154 Sum_probs=56.2
Q ss_pred ccCCceEEEEEeCCCCCChhHHHHHHHHHHHHHHh--HcCCCCeEEEEEeecCC--------------------------
Q 006254 558 RKAGALVIFVVDASGSMALNRMQNAKGAALKLLAE--SYTCRDQVSIIPFRGDS-------------------------- 609 (653)
Q Consensus 558 ~~~~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~--ay~~rd~v~li~F~~~~-------------------------- 609 (653)
...+..++||+|.|+||.. =++.+|.....|+.. .....-|+|+..|....
T Consensus 119 ~~yPVDLyyLmDlS~SM~d-dl~~lk~lg~~L~~~l~~~t~~~riGfGsFvDK~v~P~~~t~p~~~~nPC~~~~~c~~~f 197 (454)
T 3vi3_B 119 EDYPIDLYYLMDLSYSMKD-DLENVKSLGTDLMNEMRRITSDFRIGFGSFVEKTVMPYISTTPAKLRNPCTSEQNCTTPF 197 (454)
T ss_dssp SCCCEEEEEEEECSGGGHH-HHHHHTTHHHHHHHHHTTTCSSEEEEEEEECCCSSTTTSCCSTTTTTCCSCSSSCCCCCC
T ss_pred CCCceeEEEEecCCcchhh-HHHHHHHHHHHHHHHHHhcCCCeEEEEEEEeccccCCcccCChHHhcCCCcCccCCCCCc
Confidence 3458999999999999974 344556555555533 34578899999995310
Q ss_pred -cEEEcCCCcCHHHHHHHHhcCCCCCC
Q 006254 610 -AEVLLPPSRSIAMARKRLERLPCGGG 635 (653)
Q Consensus 610 -a~~~lp~t~~~~~~~~~L~~l~~gG~ 635 (653)
-..+|+.|.+.......+.....+|+
T Consensus 198 ~fr~~l~LT~d~~~F~~~V~~~~isGn 224 (454)
T 3vi3_B 198 SYKNVLSLTNKGEVFNELVGKQRISGN 224 (454)
T ss_dssp SEEEEEEEESCHHHHHHHHTTCCCCCC
T ss_pred ceeeeeecCCCHHHHHHHHhhccccCC
Confidence 11368889999999999998877666
No 226
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.96 E-value=0.046 Score=56.83 Aligned_cols=24 Identities=29% Similarity=0.184 Sum_probs=22.1
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|+|.||+|+|||+|+..|+..++
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTT
T ss_pred EEEEECCCcCCHHHHHHHHHHhCc
Confidence 478999999999999999999885
No 227
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.93 E-value=0.05 Score=54.28 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=22.2
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|.|.|++|+||||+++.|+..++
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 489999999999999999999875
No 228
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=92.85 E-value=0.05 Score=62.36 Aligned_cols=77 Identities=16% Similarity=0.133 Sum_probs=53.4
Q ss_pred ccCCceEEEEEeCCCCCChhHHHHHHHHHHHHHHh--HcCCCCeEEEEEeecC---------------------------
Q 006254 558 RKAGALVIFVVDASGSMALNRMQNAKGAALKLLAE--SYTCRDQVSIIPFRGD--------------------------- 608 (653)
Q Consensus 558 ~~~~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~--ay~~rd~v~li~F~~~--------------------------- 608 (653)
..-+..++||+|+|+||.. =++.+|.....|+.. .....-|+|+..|...
T Consensus 101 ~~ypvDly~LmD~S~SM~d-di~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~~~~Pc~~~~~~c~~~ 179 (687)
T 3k6s_B 101 KGYPIDLYYLMDLSYSMLD-DLRNVKKLGGDLLRALNEITESGRIGFGSFVDKTVLPFVNTHPDKLRNPCPNKEKECQPP 179 (687)
T ss_dssp CCCCCEEEEEEECSSTTHH-HHHTTTTCCTTHHHHHHSSCCSCEEEEEEECCCSSTTSSCCSSTTTTCCCCSCCCCCCCC
T ss_pred CCCceeEEEEEcCCcchHH-HHHHHHHHHHHHHHHHHhhCcCcEEeeEEeeccccCCccccCchhccCCCCCCCCCcCCc
Confidence 3347999999999999964 233334433333322 3567899999999631
Q ss_pred -CcEEEcCCCcCHHHHHHHHhcCCCCCC
Q 006254 609 -SAEVLLPPSRSIAMARKRLERLPCGGG 635 (653)
Q Consensus 609 -~a~~~lp~t~~~~~~~~~L~~l~~gG~ 635 (653)
.-..+|++|.+.....+.|..+...|+
T Consensus 180 f~f~~~l~lt~~~~~F~~~v~~~~isgn 207 (687)
T 3k6s_B 180 FAFRHVLKLTNNSNQFQTEVGKQLISGN 207 (687)
T ss_dssp CSCEEEEEEESCSHHHHHHHHTSCCCCC
T ss_pred ccceeecccCCCHHHHHHHHhhccccCC
Confidence 122367889999999999998877655
No 229
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.85 E-value=0.046 Score=52.43 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=19.6
Q ss_pred eEEEECCCCCHHHHHHHHHHh
Q 006254 118 GIAISGRRGTAKTVMARGLHA 138 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~ 138 (653)
-|.|.|++|+||||+++.|+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999988
No 230
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.82 E-value=0.05 Score=52.29 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=22.7
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
..+.|.||+|+||||+++.|....+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4689999999999999999998875
No 231
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.80 E-value=0.052 Score=56.32 Aligned_cols=25 Identities=36% Similarity=0.509 Sum_probs=22.7
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.-|+|.||+|+|||+|+..|++.++
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCccCHHHHHHHHHHhCC
Confidence 3488999999999999999999986
No 232
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.74 E-value=0.054 Score=56.51 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=23.0
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
..|+|.||+|+|||++++.|++.++
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999999886
No 233
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.73 E-value=0.047 Score=52.80 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=22.5
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.-|+|.|++|+||||+++.|+..++
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4589999999999999999999874
No 234
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.72 E-value=0.04 Score=53.04 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=22.0
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|.|.|++|+||||+++.|+..++
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999875
No 235
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=92.71 E-value=0.11 Score=56.75 Aligned_cols=77 Identities=16% Similarity=0.158 Sum_probs=55.8
Q ss_pred ccCCceEEEEEeCCCCCChhHHHHHHHHHHHHHHh--HcCCCCeEEEEEeecC---------------------------
Q 006254 558 RKAGALVIFVVDASGSMALNRMQNAKGAALKLLAE--SYTCRDQVSIIPFRGD--------------------------- 608 (653)
Q Consensus 558 ~~~~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~--ay~~rd~v~li~F~~~--------------------------- 608 (653)
..-+..++||+|.|+||.. =++.+|.....|+.. .....-|+|+..|...
T Consensus 129 ~~yPVDLyyLmDlS~SM~d-dl~~lk~lg~~L~~~l~~~t~~~RiGfGsFvDK~v~P~~~~~p~~l~~PC~~~~~~c~p~ 207 (503)
T 3v4v_B 129 EGYPVDLYYLMDLSYSMKD-DLERVRQLGHALLVRLQEVTHSVRIGFGSFVDKTVLPFVSTVPSKLRHPCPTRLERCQSP 207 (503)
T ss_dssp SSCCEEEEEEEECSGGGHH-HHHHHHHSSHHHHHHHTTTCSCEEEEEEEECCCSSTTTSCCCHHHHHCCSSCSSSCCCCC
T ss_pred CCCceeEEEEEecCcchhh-HHHHHHHHHHHHHHHHHhhCcCcEEeeeeecccccCCcccCCHHHhcCCCcCCCCCCCCC
Confidence 4458999999999999974 345556665555533 2457889999999531
Q ss_pred -CcEEEcCCCcCHHHHHHHHhcCCCCCC
Q 006254 609 -SAEVLLPPSRSIAMARKRLERLPCGGG 635 (653)
Q Consensus 609 -~a~~~lp~t~~~~~~~~~L~~l~~gG~ 635 (653)
.-..+||.|.+.......+......|+
T Consensus 208 f~fr~~l~LT~d~~~F~~~V~~~~iSGn 235 (503)
T 3v4v_B 208 FSFHHVLSLTGDAQAFEREVGRQSVSGN 235 (503)
T ss_dssp CSEEEEEEEESCSHHHHHHHTTCCCCCC
T ss_pred cceEEEEEecCCHHHHHHHHhhcCccCC
Confidence 012267889999999999998877655
No 236
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.68 E-value=0.06 Score=52.13 Aligned_cols=25 Identities=16% Similarity=0.343 Sum_probs=22.7
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.-|.|.||+|+|||||++.|....+
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4589999999999999999999876
No 237
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=92.63 E-value=0.091 Score=55.51 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=23.1
Q ss_pred CceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~ 141 (653)
...|+|.|++|+||||+++.|+..+.
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 34599999999999999999999874
No 238
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.63 E-value=0.059 Score=53.92 Aligned_cols=26 Identities=23% Similarity=0.371 Sum_probs=23.0
Q ss_pred CceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~ 141 (653)
..-|.|.||+|+||||+++.|++.++
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34589999999999999999998775
No 239
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.59 E-value=0.1 Score=55.65 Aligned_cols=28 Identities=18% Similarity=0.113 Sum_probs=24.0
Q ss_pred CCCceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 114 REIGGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 114 p~~~gVLL~GppGTGKT~lArala~~l~ 141 (653)
+....++|.||+|+||||+++.|+..+.
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 3455799999999999999999998753
No 240
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.56 E-value=0.054 Score=53.90 Aligned_cols=25 Identities=36% Similarity=0.508 Sum_probs=22.6
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.-|.|.||+|+||||+++.|+..+.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4599999999999999999998875
No 241
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.55 E-value=0.073 Score=52.28 Aligned_cols=27 Identities=19% Similarity=0.167 Sum_probs=23.8
Q ss_pred CceEEEECCCCCHHHHHHHHHHhhCCC
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~~ 142 (653)
..-+.|.||+|+|||||.+.|...+++
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~p 42 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQPL 42 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 345899999999999999999999873
No 242
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=92.53 E-value=0.052 Score=59.02 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=21.4
Q ss_pred CceEEecccccCCHHHHHHHHHHHH
Q 006254 225 RGVLYIDEINLLDEGISNLLLNVLT 249 (653)
Q Consensus 225 ~giL~IDEi~~l~~~~~~~Ll~~l~ 249 (653)
..+|+|||+..++......|+..+.
T Consensus 235 ~d~liiDE~sm~~~~~l~~l~~~~~ 259 (446)
T 3vkw_A 235 FKRLFIDEGLMLHTGCVNFLVEMSL 259 (446)
T ss_dssp CSEEEEETGGGSCHHHHHHHHHHTT
T ss_pred CCEEEEeCcccCCHHHHHHHHHhCC
Confidence 4699999999999999988887654
No 243
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.38 E-value=0.076 Score=51.85 Aligned_cols=26 Identities=27% Similarity=0.416 Sum_probs=23.1
Q ss_pred CceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~ 141 (653)
..-+.|.||+|+|||||++.|....|
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~p 48 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEFP 48 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34589999999999999999999884
No 244
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.38 E-value=0.049 Score=51.68 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=23.9
Q ss_pred ccCCCceEEEECCCCCHHHHHHHHHHhh
Q 006254 112 IDREIGGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 112 v~p~~~gVLL~GppGTGKT~lArala~~ 139 (653)
+.-...+|||.|++|+||||+|..+...
T Consensus 12 v~v~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 12 LVIDKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEETTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEECCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 3345678999999999999999999874
No 245
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.27 E-value=0.06 Score=50.41 Aligned_cols=19 Identities=21% Similarity=0.405 Sum_probs=17.2
Q ss_pred eEEEECCCCCHHHHHHHHH
Q 006254 118 GIAISGRRGTAKTVMARGL 136 (653)
Q Consensus 118 gVLL~GppGTGKT~lAral 136 (653)
-+.|.||+|+||||+++.+
T Consensus 11 i~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4889999999999999964
No 246
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.26 E-value=0.071 Score=49.62 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=22.7
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.-+.|.||.|+|||||.|.|+..+|
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l~ 58 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 3488999999999999999999984
No 247
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.21 E-value=0.064 Score=54.70 Aligned_cols=23 Identities=30% Similarity=0.221 Sum_probs=21.0
Q ss_pred eEEEECCCCCHHHHHHHHHHhhC
Q 006254 118 GIAISGRRGTAKTVMARGLHAIL 140 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l 140 (653)
-|+|.|+||+||||+++.|+..+
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 48999999999999999999864
No 248
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.18 E-value=0.062 Score=52.00 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=21.4
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-+.|.||+|+||||+++.|+..+.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 499999999999999999998643
No 249
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=92.14 E-value=0.2 Score=48.29 Aligned_cols=22 Identities=18% Similarity=0.164 Sum_probs=20.1
Q ss_pred EEEECCCCCHHH-HHHHHHHhhC
Q 006254 119 IAISGRRGTAKT-VMARGLHAIL 140 (653)
Q Consensus 119 VLL~GppGTGKT-~lArala~~l 140 (653)
.+|+|+.|+||| .|.+++.+..
T Consensus 23 ~fiyG~MgsGKTt~Ll~~i~n~~ 45 (195)
T 1w4r_A 23 QVILGPMFSGKSTELMRRVRRFQ 45 (195)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 899999999999 8999998865
No 250
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.13 E-value=0.062 Score=53.98 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=23.6
Q ss_pred CceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~ 141 (653)
...|.|.|++|+||||+++.|+..+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45699999999999999999999875
No 251
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.13 E-value=0.061 Score=51.08 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=21.2
Q ss_pred ceEEEECCCCCHHHHHHHHHHhh
Q 006254 117 GGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (653)
.-|.|.|++|+||||+++.|+..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 35899999999999999999986
No 252
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.98 E-value=0.032 Score=53.59 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=21.4
Q ss_pred EEEECCCCCHHHHHHHHHHhhCC
Q 006254 119 IAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (653)
|.|.|++|+||||+++.|+..+.
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999875
No 253
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=91.92 E-value=0.049 Score=52.72 Aligned_cols=26 Identities=35% Similarity=0.254 Sum_probs=22.7
Q ss_pred CCceEEEECCCCCHHHHHHHHHHhhC
Q 006254 115 EIGGIAISGRRGTAKTVMARGLHAIL 140 (653)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l 140 (653)
..+.|++++.+|.||||+|-+++-..
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA 52 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARA 52 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45779999999999999999888764
No 254
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=91.91 E-value=0.073 Score=51.40 Aligned_cols=24 Identities=33% Similarity=0.274 Sum_probs=21.2
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAIL 140 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l 140 (653)
.-++|.||+|+||||+++.++..+
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 458999999999999999999664
No 255
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.77 E-value=0.076 Score=52.08 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=19.8
Q ss_pred ceEEEECCCCCHHHHHHHHHHh
Q 006254 117 GGIAISGRRGTAKTVMARGLHA 138 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~ 138 (653)
.-+.|.||+|+|||||++.|+.
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 4499999999999999999983
No 256
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=91.52 E-value=0.14 Score=49.00 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=21.9
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|.|.|++|+||||+++.|+..++
T Consensus 24 ~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 489999999999999999999874
No 257
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.51 E-value=0.063 Score=52.62 Aligned_cols=25 Identities=24% Similarity=0.190 Sum_probs=15.3
Q ss_pred eEEEECCCCCHHHHHHHHHH-hhCCC
Q 006254 118 GIAISGRRGTAKTVMARGLH-AILPP 142 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala-~~l~~ 142 (653)
-+.|.||+|+||||+++.|+ ..++.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp EEEEECSCC----CHHHHHHC----C
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 48899999999999999999 88753
No 258
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=91.46 E-value=0.11 Score=49.92 Aligned_cols=22 Identities=18% Similarity=0.046 Sum_probs=20.3
Q ss_pred ceEEEECCCCCHHHHHHHHHHh
Q 006254 117 GGIAISGRRGTAKTVMARGLHA 138 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~ 138 (653)
.-++|.|++|+|||++++.++.
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3489999999999999999988
No 259
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.39 E-value=0.089 Score=50.57 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=21.3
Q ss_pred EEEECCCCCHHHHHHHHHHhhCC
Q 006254 119 IAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (653)
|.|.|.+|+||||+++.|++.++
T Consensus 15 IgltG~~GSGKSTva~~L~~~lg 37 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEILKNKYG 37 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhcC
Confidence 88999999999999999999754
No 260
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.37 E-value=0.096 Score=55.01 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=22.5
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|+|.||+|+|||++|+.|+..++
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCcCcHHHHHHHHHHHcC
Confidence 589999999999999999999986
No 261
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.35 E-value=0.088 Score=51.98 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=22.4
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|+|.|++|+||||+++.|++.+.
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 488999999999999999999986
No 262
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.34 E-value=0.1 Score=52.08 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=24.3
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCCCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILPPI 143 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~~ 143 (653)
.-+.|.||.|+|||||.+.|+.++++-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~p~ 51 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVKPD 51 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 568899999999999999999998753
No 263
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.34 E-value=0.084 Score=52.40 Aligned_cols=27 Identities=22% Similarity=0.318 Sum_probs=24.0
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCCCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILPPI 143 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~~ 143 (653)
.-+.|.||.|+|||||.+.|+.++++-
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~~p~ 58 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLDKPT 58 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 458899999999999999999998753
No 264
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=91.29 E-value=0.13 Score=58.63 Aligned_cols=37 Identities=24% Similarity=0.216 Sum_probs=23.3
Q ss_pred HHHHHHHHhcccCCCceEEEECCCCCHHHHH-HHHHHhhC
Q 006254 102 AIKTALLLGAIDREIGGIAISGRRGTAKTVM-ARGLHAIL 140 (653)
Q Consensus 102 ~~k~aL~~~av~p~~~gVLL~GppGTGKT~l-Arala~~l 140 (653)
.-++|+..++. ...-.||.||||||||++ +..|..++
T Consensus 193 ~Q~~AV~~al~--~~~~~lI~GPPGTGKT~ti~~~I~~l~ 230 (646)
T 4b3f_X 193 SQKEAVLFALS--QKELAIIHGPPGTGKTTTVVEIILQAV 230 (646)
T ss_dssp HHHHHHHHHHH--CSSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 44556655433 124589999999999965 44444443
No 265
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.17 E-value=0.12 Score=48.39 Aligned_cols=26 Identities=27% Similarity=0.370 Sum_probs=23.3
Q ss_pred CceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.+-.+|+||.|+|||+++++|...+.
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 34689999999999999999999886
No 266
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.17 E-value=0.18 Score=54.57 Aligned_cols=28 Identities=21% Similarity=0.202 Sum_probs=24.1
Q ss_pred CCceEEEECCCCCHHHHHHHHHHhhCCC
Q 006254 115 EIGGIAISGRRGTAKTVMARGLHAILPP 142 (653)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l~~ 142 (653)
..+-++|.||+|+||||+.+++...+++
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCC
Confidence 3445899999999999999999998863
No 267
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.16 E-value=0.08 Score=52.12 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=23.6
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCCCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILPPI 143 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~~ 143 (653)
.-+.|.||.|+|||||.+.|+.++++-
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~~p~ 57 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLDAPT 57 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 347899999999999999999998753
No 268
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.15 E-value=0.11 Score=53.91 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=23.3
Q ss_pred CCceEEEECCCCCHHHHHHHHHHhhC
Q 006254 115 EIGGIAISGRRGTAKTVMARGLHAIL 140 (653)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l 140 (653)
...-+.|+||+|+|||||++.|..++
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 44569999999999999999999987
No 269
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=91.11 E-value=0.1 Score=52.72 Aligned_cols=26 Identities=19% Similarity=0.396 Sum_probs=23.3
Q ss_pred CceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.+-++|.||+|+||||+.+.|...++
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCC
Confidence 45599999999999999999999875
No 270
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.09 E-value=0.092 Score=52.07 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=21.9
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|-|.||.|+||||+++.|+..++
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 388999999999999999999875
No 271
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.00 E-value=0.1 Score=50.40 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=19.9
Q ss_pred eEEEECCCCCHHHHHHHHHHh
Q 006254 118 GIAISGRRGTAKTVMARGLHA 138 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~ 138 (653)
-|.|.|++|+||||+++.|+.
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999998
No 272
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=90.91 E-value=0.12 Score=50.51 Aligned_cols=23 Identities=22% Similarity=0.150 Sum_probs=20.8
Q ss_pred ceEEEECCCCCHHHHHHHHHHhh
Q 006254 117 GGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (653)
.-++|.||+|+|||++++.++..
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 34999999999999999999985
No 273
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.80 E-value=0.1 Score=51.03 Aligned_cols=27 Identities=22% Similarity=0.475 Sum_probs=23.8
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCCCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILPPI 143 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~~ 143 (653)
.-+.|.||.|+|||||.+.|+.++++-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~~p~ 62 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYLKPL 62 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 348899999999999999999998753
No 274
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=90.73 E-value=0.13 Score=49.66 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=22.1
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|.|.|++|+||||+++.|+..++
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 589999999999999999999875
No 275
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=90.67 E-value=0.1 Score=56.31 Aligned_cols=24 Identities=13% Similarity=0.088 Sum_probs=21.6
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|+|.|+||+||||+|+.|+..+.
T Consensus 260 lIil~G~pGSGKSTla~~L~~~~~ 283 (416)
T 3zvl_A 260 VVVAVGFPGAGKSTFIQEHLVSAG 283 (416)
T ss_dssp EEEEESCTTSSHHHHHHHHTGGGT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 389999999999999999998764
No 276
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=90.67 E-value=0.1 Score=54.11 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=22.3
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|.|.||+|+|||||++.|+.+++
T Consensus 92 ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHhhcc
Confidence 388999999999999999999886
No 277
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=90.66 E-value=0.37 Score=56.18 Aligned_cols=45 Identities=16% Similarity=0.310 Sum_probs=37.4
Q ss_pred cCCceEEEEEeCCCCCChhHHHHHHHHHHHHHHhHcCCCCeEEEEEee
Q 006254 559 KAGALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFR 606 (653)
Q Consensus 559 ~~~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~ay~~rd~v~li~F~ 606 (653)
..+-.++||||+|.++ ..++.+|.++...| +....+.+||||+|+
T Consensus 119 ~~pp~~vFvIDvs~~~--~~l~~l~~sl~~~L-~~Lp~~~~VGlITf~ 163 (768)
T 1m2o_A 119 TVPPIFFFVVDLTSET--ENLDSLKESIITSL-SLLPPNALIGLITYG 163 (768)
T ss_dssp CSCCEEEEEEECCSCH--HHHHHHHHHHHHHH-HTSCTTCEEEEEEES
T ss_pred CCCCEEEEEEECCcCH--HHHHHHHHHHHHHH-HhCCCCCEEEEEEEC
Confidence 3467889999999986 46888999998888 456788999999995
No 278
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.65 E-value=0.11 Score=52.53 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=23.8
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCCCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILPPI 143 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~~ 143 (653)
.-+.|.||.|+|||||.+.|+.++++-
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~~p~ 59 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLEKPS 59 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 347899999999999999999998753
No 279
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.56 E-value=0.11 Score=52.28 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=23.9
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCCCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILPPI 143 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~~ 143 (653)
.-+.|.||.|+|||||.+.|+.++++-
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~~p~ 60 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFLKAD 60 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 348899999999999999999998753
No 280
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.49 E-value=0.11 Score=52.86 Aligned_cols=27 Identities=30% Similarity=0.453 Sum_probs=24.0
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCCCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILPPI 143 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~~ 143 (653)
.-+.|.||.|+|||||.+.|+.++++-
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~~p~ 61 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGILKPS 61 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCC
Confidence 348899999999999999999998753
No 281
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.43 E-value=0.12 Score=51.58 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=23.5
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILPP 142 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~ 142 (653)
.-+.|.||.|+|||||.+.|+.++++
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~p 54 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFYQP 54 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 35889999999999999999999875
No 282
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=90.40 E-value=0.12 Score=53.15 Aligned_cols=24 Identities=25% Similarity=0.239 Sum_probs=22.2
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|.|.|++|+||||+++.|...+.
T Consensus 33 ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 388999999999999999999886
No 283
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.36 E-value=0.12 Score=51.49 Aligned_cols=27 Identities=15% Similarity=0.273 Sum_probs=23.9
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCCCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILPPI 143 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~~ 143 (653)
.-+.|.||.|+|||||.+.|+.++++-
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~~p~ 59 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLVRAQ 59 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 348899999999999999999998753
No 284
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.36 E-value=0.12 Score=51.78 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=24.0
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCCCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILPPI 143 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~~ 143 (653)
.-+.|.||.|+|||||.+.|+.++++-
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~~p~ 62 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFYIPE 62 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 458899999999999999999998753
No 285
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.30 E-value=0.12 Score=50.97 Aligned_cols=28 Identities=25% Similarity=0.277 Sum_probs=24.4
Q ss_pred CceEEEECCCCCHHHHHHHHHHhhCCCC
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAILPPI 143 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~~~ 143 (653)
..-+.|.||.|+|||||.+.|+.++++-
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~ 61 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGELEPS 61 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCC
Confidence 3458899999999999999999998753
No 286
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.25 E-value=0.12 Score=52.23 Aligned_cols=27 Identities=19% Similarity=0.224 Sum_probs=23.9
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCCCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILPPI 143 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~~ 143 (653)
.-+.|.||.|+|||||.+.|+.++++-
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~~p~ 77 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLEDFD 77 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCCCCC
Confidence 348899999999999999999998753
No 287
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=90.21 E-value=0.13 Score=50.61 Aligned_cols=25 Identities=24% Similarity=0.242 Sum_probs=22.3
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.-|.|.|++|+||||+++.|+..++
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3489999999999999999999764
No 288
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=90.18 E-value=0.16 Score=53.52 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=23.5
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILPP 142 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~ 142 (653)
..+.|.|++|+|||||++.|+.++++
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45999999999999999999999863
No 289
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.14 E-value=0.13 Score=51.64 Aligned_cols=26 Identities=12% Similarity=0.250 Sum_probs=23.4
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILPP 142 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~ 142 (653)
.-+.|.||.|+|||||.+.|+.++++
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~p 52 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTSG 52 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 34889999999999999999999864
No 290
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.10 E-value=0.12 Score=52.32 Aligned_cols=26 Identities=35% Similarity=0.503 Sum_probs=23.4
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILPP 142 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~ 142 (653)
.-+.|.||.|+|||||.+.|+.++++
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~~p 63 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYLSP 63 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSSCC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 44889999999999999999999864
No 291
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.06 E-value=0.13 Score=52.29 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=24.0
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCCCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILPPI 143 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~~ 143 (653)
.-+.|.||.|+|||||.+.|+.++++-
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~~p~ 72 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLYQPT 72 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 458899999999999999999998753
No 292
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=90.05 E-value=0.1 Score=51.79 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=23.4
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILPP 142 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~ 142 (653)
.-+.|.||.|+|||||.+.|+.++++
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~~p 57 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEMDK 57 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCSEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 45899999999999999999998864
No 293
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.04 E-value=0.13 Score=52.50 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=23.9
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCCCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILPPI 143 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~~ 143 (653)
.-+.|.||.|+|||||.+.|+.++++-
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~~p~ 74 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYEPAT 74 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 348899999999999999999998753
No 294
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=89.96 E-value=0.21 Score=55.38 Aligned_cols=27 Identities=19% Similarity=0.340 Sum_probs=24.4
Q ss_pred CceEEEECCCCCHHHHHHHHHHhhCCC
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~~ 142 (653)
...++|.||+|+||||+.++|..++++
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~ 286 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPP 286 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 446999999999999999999999874
No 295
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.94 E-value=0.13 Score=51.68 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=23.8
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCCCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILPPI 143 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~~ 143 (653)
.-+.|.||.|+|||||.+.|+.++++-
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~~p~ 68 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLIKPS 68 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 348899999999999999999998753
No 296
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.76 E-value=0.14 Score=51.43 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=23.8
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCCCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILPPI 143 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~~ 143 (653)
.-+.|.||.|+|||||.+.|+.++++-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~~p~ 58 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIHRPI 58 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 348899999999999999999998753
No 297
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.76 E-value=0.14 Score=51.80 Aligned_cols=27 Identities=15% Similarity=0.436 Sum_probs=23.8
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCCCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILPPI 143 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~~ 143 (653)
.-+.|.||.|+|||||.+.|+.++++-
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~~p~ 60 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLIEPT 60 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 348899999999999999999998753
No 298
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=89.73 E-value=0.15 Score=53.23 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=21.7
Q ss_pred EEEECCCCCHHHHHHHHHHhhCC
Q 006254 119 IAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (653)
|.|.||+|+||||+++.|..++.
T Consensus 95 igI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 89999999999999999999875
No 299
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=89.63 E-value=0.14 Score=54.08 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=24.5
Q ss_pred CceEEEECCCCCHHHHHHHHHHhhCCC
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~~ 142 (653)
...++|.||+|+||||++++|...+++
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~~ 201 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIPF 201 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 457999999999999999999999874
No 300
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=89.62 E-value=0.13 Score=52.42 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=22.3
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.-++|.|++|+||||+++.|+..+.
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3589999999999999999998764
No 301
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=89.56 E-value=0.11 Score=49.02 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=22.5
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.-|.|.|++|+||||+++.|...+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3578999999999999999999875
No 302
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=89.51 E-value=0.14 Score=52.85 Aligned_cols=24 Identities=38% Similarity=0.470 Sum_probs=22.0
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|.|.|++|+||||+++.|+.+++
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 488999999999999999999875
No 303
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=89.40 E-value=0.16 Score=53.85 Aligned_cols=26 Identities=31% Similarity=0.374 Sum_probs=23.2
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILPP 142 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~ 142 (653)
.-+.|.||.|+|||||.|.|+.+.++
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~~p 56 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFEQP 56 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSSCC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCCC
Confidence 34889999999999999999999864
No 304
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=89.33 E-value=0.18 Score=53.14 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=23.2
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILPP 142 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~ 142 (653)
.-+.|.||.|+|||||.|.|+.+.++
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~~p 52 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFHVP 52 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSSCC
T ss_pred CEEEEECCCCccHHHHHHHHHcCCCC
Confidence 34889999999999999999999864
No 305
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=89.28 E-value=0.15 Score=51.94 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=19.7
Q ss_pred eEEEECCCCCHHHHHHHHHHh
Q 006254 118 GIAISGRRGTAKTVMARGLHA 138 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~ 138 (653)
-|.|.|++|+||||+++.|+.
T Consensus 77 iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999999995
No 306
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=89.25 E-value=0.23 Score=47.96 Aligned_cols=24 Identities=25% Similarity=0.241 Sum_probs=22.5
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|.|.|+.|+|||++++.|++.+.
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999985
No 307
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=89.23 E-value=0.18 Score=53.25 Aligned_cols=26 Identities=23% Similarity=0.394 Sum_probs=23.3
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILPP 142 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~ 142 (653)
.-+.|.||.|+|||||.|.|+.++++
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~~p 67 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLERP 67 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 34889999999999999999999864
No 308
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=89.19 E-value=0.16 Score=51.41 Aligned_cols=25 Identities=24% Similarity=0.159 Sum_probs=22.0
Q ss_pred CceEEEECCCCCHHHHHHHHHHhhC
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAIL 140 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l 140 (653)
..-++|.|++|+|||||++.++..+
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4459999999999999999999765
No 309
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=89.15 E-value=0.14 Score=53.50 Aligned_cols=27 Identities=19% Similarity=0.426 Sum_probs=24.5
Q ss_pred CceEEEECCCCCHHHHHHHHHHhhCCC
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~~ 142 (653)
...++|.||+|+||||+.++|...+++
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~ 197 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPK 197 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 457999999999999999999999874
No 310
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=89.15 E-value=0.14 Score=49.86 Aligned_cols=23 Identities=22% Similarity=0.092 Sum_probs=21.2
Q ss_pred ceEEEECCCCCHHHHHHHHHHhh
Q 006254 117 GGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (653)
.-+.|.||.|+|||||.+.|+.+
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 45889999999999999999998
No 311
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=89.14 E-value=0.18 Score=53.67 Aligned_cols=26 Identities=19% Similarity=0.396 Sum_probs=23.4
Q ss_pred CceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.+-++|.||+|+||||+.++|...++
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 45599999999999999999999875
No 312
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=89.08 E-value=0.19 Score=53.59 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=23.2
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILPP 142 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~ 142 (653)
.-+.|.||+|+|||||.|.|+.+.++
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~~p 55 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLETI 55 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CEEEEEcCCCchHHHHHHHHHcCCCC
Confidence 34889999999999999999999864
No 313
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=89.04 E-value=0.39 Score=56.25 Aligned_cols=91 Identities=16% Similarity=0.166 Sum_probs=61.5
Q ss_pred cCCceEEEEEeCCCCCCh-hHHHHHHHHHHHHHHhHcCC---CCeEEEEEeecCCcEE----------------------
Q 006254 559 KAGALVIFVVDASGSMAL-NRMQNAKGAALKLLAESYTC---RDQVSIIPFRGDSAEV---------------------- 612 (653)
Q Consensus 559 ~~~~~v~~vvD~SgSM~~-~r~~~ak~a~~~ll~~ay~~---rd~v~li~F~~~~a~~---------------------- 612 (653)
..+-.++||||+|.++-. .-++.++.++...|.. ... +-+||||+|+.. ..+
T Consensus 185 p~pp~yvFvIDvs~~av~~g~l~~~~~si~~~L~~-Lp~~~~~~~VGlITfd~~-V~~~~l~~~~~g~k~~~~q~~mlvv 262 (810)
T 1pcx_A 185 PPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDS-IPNHDERTRISILCVDNA-IHYFKIPLDSENNEESADQINMMDI 262 (810)
T ss_dssp CCCCEEEEEEECSHHHHHHTHHHHHHHHHHHHTTT-SCCTTSCCEEEEEEESSS-EEEEECCCGGGC-------CEEECC
T ss_pred CCCcEEEEEEECChHHHhhhHHHHHHHHHHHHHHh-CCCCCCCcEEEEEEECCE-EEEEecCccccCccccccchhhccc
Confidence 346789999999988732 3477788888877743 333 689999999532 211
Q ss_pred --------------EcCCCcCHHHHHHHHhcCC------CCCCCchHHHHHHHHHHHhh
Q 006254 613 --------------LLPPSRSIAMARKRLERLP------CGGGSPLAHGLSMGWAKCGE 651 (653)
Q Consensus 613 --------------~lp~t~~~~~~~~~L~~l~------~gG~Tpl~~gl~~a~~~l~~ 651 (653)
++|.......+...|+.|+ ..+.+.++.||..|..+|+.
T Consensus 263 ~dl~d~f~P~~~~~Lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~a~G~AL~~A~~lL~~ 321 (810)
T 1pcx_A 263 ADLEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGG 321 (810)
T ss_dssp CCTTCC-----TTTSEETTTTHHHHHHHHHHHHHHTTTCCCCCCCHHHHHHHHHHHHTT
T ss_pred cccccccCCCcccccccHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHh
Confidence 1122234455555666553 36788999999999998864
No 314
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=88.95 E-value=0.18 Score=49.22 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=20.2
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAIL 140 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l 140 (653)
.-++|.|+||+|||+++..++..+
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 348999999999999998887643
No 315
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=88.89 E-value=0.28 Score=54.71 Aligned_cols=41 Identities=15% Similarity=0.096 Sum_probs=31.6
Q ss_pred echHHHHHHHHHhccc---CCCceEEEECCCCCHHHHHHHHHHh
Q 006254 98 VGQDAIKTALLLGAID---REIGGIAISGRRGTAKTVMARGLHA 138 (653)
Q Consensus 98 vGq~~~k~aL~~~av~---p~~~gVLL~GppGTGKT~lArala~ 138 (653)
+|.+..+..|.-.+.. +...-|.|+|..|.|||+||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 5999888877433322 2345699999999999999999996
No 316
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=88.86 E-value=0.2 Score=50.41 Aligned_cols=27 Identities=22% Similarity=0.270 Sum_probs=23.9
Q ss_pred CceEEEECCCCCHHHHHHHHHHhhCCC
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~~ 142 (653)
..-+.|.||.|+|||||.+.|+.++++
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 72 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFYDA 72 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 345899999999999999999999864
No 317
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=88.85 E-value=0.2 Score=53.03 Aligned_cols=26 Identities=23% Similarity=0.393 Sum_probs=23.1
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILPP 142 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~ 142 (653)
.-+.|.||.|+|||||.|.|+.++++
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~p 55 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIYKP 55 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCCC
Confidence 34789999999999999999999864
No 318
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=88.82 E-value=0.2 Score=52.99 Aligned_cols=26 Identities=31% Similarity=0.324 Sum_probs=23.2
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILPP 142 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~ 142 (653)
.-+.|.||.|+|||||.|.|+.++++
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~p 55 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIYKP 55 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred CEEEEEcCCCchHHHHHHHHHCCCCC
Confidence 34789999999999999999999864
No 319
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=88.78 E-value=0.18 Score=52.10 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=22.2
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|.|.||+|+||||+++.|+.++.
T Consensus 104 vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 488999999999999999999875
No 320
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=88.77 E-value=0.21 Score=53.18 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=23.3
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILPP 142 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~ 142 (653)
.-+.|.||.|+|||||.|.|+.++++
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~~p 63 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLEEP 63 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCC
Confidence 34889999999999999999999874
No 321
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=88.61 E-value=0.53 Score=53.66 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=22.3
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
+..+|.|++|+|||+++-.++..+.
T Consensus 193 ~~~vlta~RGRGKSa~lG~~~a~~~ 217 (671)
T 2zpa_A 193 GVAAVTAARGRGKSALAGQLISRIA 217 (671)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred CeEEEecCCCCCHHHHHHHHHHHHH
Confidence 5689999999999999999988774
No 322
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=88.57 E-value=0.21 Score=53.06 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=23.2
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILPP 142 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~ 142 (653)
.-+.|.||.|+|||||.|.|+.++++
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~p 55 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLEEP 55 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred CEEEEECCCCcHHHHHHHHHHcCCCC
Confidence 34889999999999999999999864
No 323
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=88.56 E-value=0.21 Score=47.11 Aligned_cols=25 Identities=16% Similarity=0.113 Sum_probs=22.1
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.-+.|.|++|+||||++..|...+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 4588999999999999999998764
No 324
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=88.34 E-value=0.13 Score=51.53 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=22.2
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|+|.|.+|+||||+++.|++.+.
T Consensus 26 ~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 26 KISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp EEEEECSTTSSHHHHHTTTGGGCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 489999999999999999999885
No 325
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=88.29 E-value=0.19 Score=53.13 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=23.2
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILPP 142 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~ 142 (653)
.-+.|.||.|+|||||.|.|+.+.++
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~~p 57 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLDVP 57 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSSCC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 34889999999999999999999864
No 326
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=88.20 E-value=0.72 Score=51.66 Aligned_cols=26 Identities=31% Similarity=0.163 Sum_probs=20.8
Q ss_pred CCceEEEECCCCCHHHHHHHHHHhhC
Q 006254 115 EIGGIAISGRRGTAKTVMARGLHAIL 140 (653)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l 140 (653)
+...+||.+++|+|||.++-.++..+
T Consensus 197 ~~~~~ll~~~TGsGKT~~~~~~~~~l 222 (590)
T 3h1t_A 197 GKKRSLITMATGTGKTVVAFQISWKL 222 (590)
T ss_dssp TCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEecCCCChHHHHHHHHHHH
Confidence 34679999999999999977666544
No 327
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=88.18 E-value=0.24 Score=46.88 Aligned_cols=24 Identities=13% Similarity=0.134 Sum_probs=21.4
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAIL 140 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l 140 (653)
..|+|.|++|+|||+|.+.+....
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 358999999999999999998864
No 328
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=88.17 E-value=0.19 Score=53.95 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=22.2
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|+|.||+|+|||+|+..|+..++
T Consensus 4 ~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHT
T ss_pred EEEEECcchhhHHHHHHHHHHHCC
Confidence 478999999999999999999886
No 329
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=88.13 E-value=0.22 Score=48.98 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=22.3
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|.|.|..|+||||+++.|++.++
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999999985
No 330
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=88.12 E-value=0.34 Score=55.05 Aligned_cols=25 Identities=32% Similarity=0.209 Sum_probs=20.4
Q ss_pred CceEEEECCCCCHHHHHHHHHHhhC
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAIL 140 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l 140 (653)
.+.++|.||||||||+++..+...+
T Consensus 195 ~~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 195 RPLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHH
Confidence 3568999999999999887776654
No 331
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=88.10 E-value=0.21 Score=51.50 Aligned_cols=24 Identities=33% Similarity=0.256 Sum_probs=22.1
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-+.|.||.|+||||+++.|+..+.
T Consensus 102 vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 388999999999999999999875
No 332
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=88.06 E-value=0.22 Score=46.98 Aligned_cols=24 Identities=13% Similarity=0.153 Sum_probs=21.5
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|.|.|++|+|||||.+.+.....
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 589999999999999999998653
No 333
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=87.99 E-value=0.23 Score=46.92 Aligned_cols=25 Identities=28% Similarity=0.278 Sum_probs=22.1
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.-+.|.|++|+||||+++.|...+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 4588999999999999999998764
No 334
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=87.96 E-value=0.22 Score=49.72 Aligned_cols=23 Identities=22% Similarity=0.253 Sum_probs=21.1
Q ss_pred ceEEEECCCCCHHHHHHHHHHhh
Q 006254 117 GGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (653)
.-+.|.||.|+|||||.+.|+.+
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 34889999999999999999997
No 335
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=87.94 E-value=0.23 Score=50.25 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=21.8
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAIL 140 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l 140 (653)
.-+.|.||.|+|||||.+.|+.++
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTCT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 458899999999999999999984
No 336
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=87.94 E-value=0.27 Score=44.16 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=20.2
Q ss_pred eEEEECCCCCHHHHHHHHHHhh
Q 006254 118 GIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~ 139 (653)
.|+|.|++|+|||+++..+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
No 337
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=87.90 E-value=0.2 Score=50.68 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=22.1
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
.+.|.||+|+|||||.+.|.....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 578999999999999999999875
No 338
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=87.84 E-value=0.13 Score=52.83 Aligned_cols=24 Identities=17% Similarity=0.400 Sum_probs=18.7
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|.|.|++|+||||+++.|+..++
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 388999999999999999999764
No 339
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=87.84 E-value=0.22 Score=55.45 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=21.8
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|+|.|.||+||||+++.|+..+.
T Consensus 37 lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 37 VIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 489999999999999999998773
No 340
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=87.83 E-value=0.27 Score=50.88 Aligned_cols=28 Identities=21% Similarity=0.229 Sum_probs=24.6
Q ss_pred CceEEEECCCCCHHHHHHHHHHhhCCCC
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAILPPI 143 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~~~ 143 (653)
..-+.|.||.|+|||||++.|..++++-
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl~~p~ 107 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRFYDIS 107 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTSSCCS
T ss_pred CCEEEEECCCCchHHHHHHHHHcCCCCC
Confidence 4459999999999999999999998753
No 341
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=87.79 E-value=0.38 Score=58.33 Aligned_cols=49 Identities=20% Similarity=0.126 Sum_probs=37.3
Q ss_pred CCCCCceechHHHHHHHHHhcc--cCCCceEEEECCCCCHHHHHHHHHHhh
Q 006254 91 FFPLAAVVGQDAIKTALLLGAI--DREIGGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 91 ~~~f~~IvGq~~~k~aL~~~av--~p~~~gVLL~GppGTGKT~lArala~~ 139 (653)
|.+...+||.+..+..|.-.+. .....-|.|+|+.|.|||+||+.++..
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred CCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 4456779999998888854432 223455899999999999999988764
No 342
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=87.75 E-value=0.25 Score=48.21 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=18.6
Q ss_pred eEEEECCCCCHHHHHHHHHHh
Q 006254 118 GIAISGRRGTAKTVMARGLHA 138 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~ 138 (653)
-++|.|+||+|||++|-.++.
T Consensus 32 l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 399999999999999988764
No 343
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=87.69 E-value=0.23 Score=52.21 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=21.4
Q ss_pred eEEEECCCCCHHHHHHHHHHhhC
Q 006254 118 GIAISGRRGTAKTVMARGLHAIL 140 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l 140 (653)
-+.|+||+|+|||||++.++...
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 39999999999999999999876
No 344
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=87.59 E-value=0.2 Score=51.97 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=21.8
Q ss_pred CCceEEEECCCCCHHHHHHHHHHhh
Q 006254 115 EIGGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~ 139 (653)
...||||.|++|+|||++|-.+...
T Consensus 146 ~g~gvli~G~sG~GKStlal~l~~~ 170 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECALDLINK 170 (312)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 4577999999999999999988763
No 345
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=87.59 E-value=0.22 Score=50.30 Aligned_cols=24 Identities=29% Similarity=0.547 Sum_probs=22.1
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAIL 140 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l 140 (653)
.-+.|.||.|+|||||.+.|+.++
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 358899999999999999999988
No 346
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=87.53 E-value=0.25 Score=48.22 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=21.9
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|.|.|++|+||||+++.|++.+.
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 388999999999999999999875
No 347
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=87.41 E-value=0.21 Score=55.98 Aligned_cols=25 Identities=32% Similarity=0.385 Sum_probs=22.8
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.-|.|.|++|+||||+++.|+..+.
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHhhc
Confidence 4589999999999999999999885
No 348
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=87.38 E-value=0.29 Score=44.14 Aligned_cols=23 Identities=13% Similarity=0.111 Sum_probs=20.5
Q ss_pred ceEEEECCCCCHHHHHHHHHHhh
Q 006254 117 GGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (653)
-.|+|.|++|+|||+|+..+...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 349
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=87.31 E-value=0.44 Score=51.63 Aligned_cols=25 Identities=24% Similarity=0.062 Sum_probs=21.3
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
+.++|.+|+|+|||.++-.+...+.
T Consensus 109 ~~~ll~~~TGsGKT~~~l~~i~~~~ 133 (472)
T 2fwr_A 109 KRGCIVLPTGSGKTHVAMAAINELS 133 (472)
T ss_dssp TEEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcC
Confidence 5699999999999999887777654
No 350
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=87.31 E-value=0.94 Score=36.66 Aligned_cols=58 Identities=9% Similarity=-0.035 Sum_probs=47.0
Q ss_pred hhhcccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHcCC
Q 006254 341 EYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVILP 405 (653)
Q Consensus 341 ~~l~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~h 405 (653)
+.++++.++.++...+.+.|..+ ...+...|..+|.-+++.+|+.+||..|++.+|.+
T Consensus 16 ~~~p~~~is~~A~~~i~~~~~~F-------i~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ll~k 73 (76)
T 3b0c_W 16 KHKPHLRLAANTDLLVHLSFLLF-------LHRLAEEARTNAFENKSKIIKPEHTIAAAKVILKK 73 (76)
T ss_dssp HHCTTCEECTTHHHHHHHHHHHH-------HHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHHHH
T ss_pred HhCCCCccCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 34567889999999888877655 23566677888999999999999999999988753
No 351
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=87.24 E-value=0.26 Score=51.50 Aligned_cols=24 Identities=29% Similarity=0.271 Sum_probs=22.1
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-+.|.||+|+||||+++.|+..+.
T Consensus 131 vi~lvG~nGaGKTTll~~Lag~l~ 154 (328)
T 3e70_C 131 VIMFVGFNGSGKTTTIAKLANWLK 154 (328)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 389999999999999999999875
No 352
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=87.19 E-value=0.24 Score=46.28 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=20.0
Q ss_pred eEEEECCCCCHHHHHHHHHHhh
Q 006254 118 GIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~ 139 (653)
.|+|.|++|+|||+|.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998864
No 353
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=87.13 E-value=0.32 Score=43.70 Aligned_cols=22 Identities=14% Similarity=0.258 Sum_probs=19.8
Q ss_pred eEEEECCCCCHHHHHHHHHHhh
Q 006254 118 GIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~ 139 (653)
.|+|.|++|+|||+|...+...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999988763
No 354
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=87.13 E-value=0.28 Score=44.86 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=20.1
Q ss_pred eEEEECCCCCHHHHHHHHHHhh
Q 006254 118 GIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~ 139 (653)
-|.|.|++|+|||+|.+.+...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999864
No 355
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=87.08 E-value=0.23 Score=52.46 Aligned_cols=23 Identities=26% Similarity=0.192 Sum_probs=21.1
Q ss_pred eEEEECCCCCHHHHHHHHHHhhC
Q 006254 118 GIAISGRRGTAKTVMARGLHAIL 140 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l 140 (653)
-++|+||||+|||||+..++..+
T Consensus 63 i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 39999999999999999999875
No 356
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=86.99 E-value=0.27 Score=50.79 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=21.5
Q ss_pred EEEECCCCCHHHHHHHHHHhhCC
Q 006254 119 IAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (653)
++|.|++|+||||+++.|+..+.
T Consensus 107 i~ivG~~GsGKTTl~~~LA~~l~ 129 (306)
T 1vma_A 107 IMVVGVNGTGKTTSCGKLAKMFV 129 (306)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCChHHHHHHHHHHHHH
Confidence 88999999999999999999874
No 357
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=86.96 E-value=0.31 Score=51.63 Aligned_cols=26 Identities=19% Similarity=0.348 Sum_probs=23.2
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILPP 142 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~ 142 (653)
.-+.|.||.|+|||||.|.|+.++++
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~~p 80 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLERP 80 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CEEEEEcCCCchHHHHHHHHhcCCCC
Confidence 34889999999999999999998864
No 358
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=86.95 E-value=0.3 Score=44.52 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=20.2
Q ss_pred ceEEEECCCCCHHHHHHHHHHhh
Q 006254 117 GGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (653)
..|+|.|++|+|||+|++.+...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 35999999999999999998753
No 359
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=86.69 E-value=0.24 Score=48.92 Aligned_cols=24 Identities=25% Similarity=0.206 Sum_probs=19.0
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|.|.|++|+||||+++.|++.+.
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 388999999999999999999875
No 360
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=86.65 E-value=0.3 Score=43.69 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=20.1
Q ss_pred eEEEECCCCCHHHHHHHHHHhh
Q 006254 118 GIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~ 139 (653)
.|++.|++|+|||+++..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 361
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=86.59 E-value=0.34 Score=43.67 Aligned_cols=22 Identities=9% Similarity=0.173 Sum_probs=19.9
Q ss_pred eEEEECCCCCHHHHHHHHHHhh
Q 006254 118 GIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~ 139 (653)
.|+|.|++|+|||+|...+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998764
No 362
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=86.59 E-value=0.35 Score=43.48 Aligned_cols=23 Identities=13% Similarity=0.198 Sum_probs=20.5
Q ss_pred ceEEEECCCCCHHHHHHHHHHhh
Q 006254 117 GGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (653)
..|+|.|++|+|||+|...+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999864
No 363
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=86.53 E-value=0.35 Score=43.67 Aligned_cols=23 Identities=13% Similarity=0.163 Sum_probs=20.5
Q ss_pred ceEEEECCCCCHHHHHHHHHHhh
Q 006254 117 GGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (653)
-.|+|.|++|+|||+|.+.+...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35999999999999999999874
No 364
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=86.52 E-value=0.38 Score=44.72 Aligned_cols=25 Identities=20% Similarity=0.102 Sum_probs=21.9
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
..|+|.|++|+|||+|++.+.....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhcc
Confidence 3599999999999999999987654
No 365
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=86.46 E-value=0.29 Score=51.74 Aligned_cols=23 Identities=35% Similarity=0.315 Sum_probs=21.8
Q ss_pred EEEECCCCCHHHHHHHHHHhhCC
Q 006254 119 IAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (653)
+.|.|+.|+||||+++.|+..+.
T Consensus 160 i~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 160 IMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEcCCCChHHHHHHHHHhhcc
Confidence 88999999999999999999875
No 366
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=86.42 E-value=0.31 Score=50.00 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=23.3
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILPP 142 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~ 142 (653)
.-+.|.||.|+|||||.+.|+.++++
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~~p 90 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGELEP 90 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSSCE
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 34889999999999999999999864
No 367
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=86.40 E-value=1 Score=37.25 Aligned_cols=41 Identities=22% Similarity=0.106 Sum_probs=31.8
Q ss_pred CCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHcCCC
Q 006254 366 QGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVILPR 406 (653)
Q Consensus 366 ~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~hR 406 (653)
.|.-....+++-|.-.|..++...|+.+|+..|+..+.+.+
T Consensus 45 ~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~p~~ 85 (86)
T 2krk_A 45 ASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKD 85 (86)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccCC
Confidence 35555666777777777778888999999999999887643
No 368
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=86.31 E-value=0.36 Score=43.66 Aligned_cols=23 Identities=17% Similarity=0.167 Sum_probs=20.3
Q ss_pred ceEEEECCCCCHHHHHHHHHHhh
Q 006254 117 GGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (653)
-.|+|.|++|+|||+|...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999863
No 369
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=86.22 E-value=0.37 Score=44.00 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=20.4
Q ss_pred ceEEEECCCCCHHHHHHHHHHhh
Q 006254 117 GGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (653)
..|+|.|++|+|||+|...+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45999999999999999999764
No 370
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=86.18 E-value=0.28 Score=50.38 Aligned_cols=25 Identities=32% Similarity=0.271 Sum_probs=22.3
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.-++|.|++|+||||++..|+..+.
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3499999999999999999998874
No 371
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=86.12 E-value=0.36 Score=46.14 Aligned_cols=25 Identities=24% Similarity=0.201 Sum_probs=22.1
Q ss_pred CceEEEECCCCCHHHHHHHHHHhhC
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAIL 140 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l 140 (653)
...|+|.|++|+|||+|+..+....
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4569999999999999999998754
No 372
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=86.11 E-value=0.37 Score=44.91 Aligned_cols=25 Identities=24% Similarity=0.201 Sum_probs=21.8
Q ss_pred CceEEEECCCCCHHHHHHHHHHhhC
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAIL 140 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l 140 (653)
...|+|.|++|+|||+|...+...-
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3469999999999999999998753
No 373
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=86.05 E-value=0.38 Score=43.54 Aligned_cols=23 Identities=13% Similarity=0.037 Sum_probs=20.4
Q ss_pred ceEEEECCCCCHHHHHHHHHHhh
Q 006254 117 GGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (653)
-.|+|.|++|+|||+|...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35999999999999999998864
No 374
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=85.98 E-value=0.39 Score=43.94 Aligned_cols=23 Identities=22% Similarity=0.179 Sum_probs=20.5
Q ss_pred ceEEEECCCCCHHHHHHHHHHhh
Q 006254 117 GGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (653)
..|+|.|++|+|||+|+..+...
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999988764
No 375
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=85.96 E-value=0.32 Score=53.26 Aligned_cols=26 Identities=27% Similarity=0.236 Sum_probs=23.2
Q ss_pred CceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~ 141 (653)
..-|.|.||.|+|||||+|.|+.++.
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl~~ 163 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSYAL 163 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHTTH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCccc
Confidence 34599999999999999999999875
No 376
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=85.95 E-value=0.39 Score=43.24 Aligned_cols=22 Identities=14% Similarity=0.241 Sum_probs=20.0
Q ss_pred eEEEECCCCCHHHHHHHHHHhh
Q 006254 118 GIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~ 139 (653)
.|+|.|++|+|||+|.+.+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 377
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=85.94 E-value=0.32 Score=53.21 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=22.3
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.-|+|.|.||+||||+++.|+..+.
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3599999999999999999998763
No 378
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=85.90 E-value=0.27 Score=52.58 Aligned_cols=26 Identities=19% Similarity=0.379 Sum_probs=23.0
Q ss_pred CceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~ 141 (653)
..-+.|.||.|+|||||.|.|+.+++
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred CCEEEEECCCCChHHHHHHHHhCCCC
Confidence 34599999999999999999999874
No 379
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=85.90 E-value=0.39 Score=43.28 Aligned_cols=23 Identities=9% Similarity=0.055 Sum_probs=20.3
Q ss_pred ceEEEECCCCCHHHHHHHHHHhh
Q 006254 117 GGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (653)
..|+|.|++|+|||+|...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999998863
No 380
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=85.82 E-value=0.38 Score=44.61 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=20.5
Q ss_pred ceEEEECCCCCHHHHHHHHHHhh
Q 006254 117 GGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (653)
..|+|.|++|+|||+|.+.+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35999999999999999999864
No 381
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=85.75 E-value=0.34 Score=51.03 Aligned_cols=24 Identities=29% Similarity=0.163 Sum_probs=20.9
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAIL 140 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l 140 (653)
.-++|+|+||+|||+++..++...
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 349999999999999999998654
No 382
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=85.72 E-value=0.36 Score=43.64 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=20.3
Q ss_pred ceEEEECCCCCHHHHHHHHHHhh
Q 006254 117 GGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (653)
-.|+|.|++|+|||+|...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999999863
No 383
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=85.71 E-value=0.39 Score=43.48 Aligned_cols=21 Identities=19% Similarity=0.412 Sum_probs=19.3
Q ss_pred eEEEECCCCCHHHHHHHHHHh
Q 006254 118 GIAISGRRGTAKTVMARGLHA 138 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~ 138 (653)
.|+|.|++|+|||+|+..+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999875
No 384
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=85.70 E-value=0.34 Score=53.41 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=21.6
Q ss_pred EEEECCCCCHHHHHHHHHHhhCC
Q 006254 119 IAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (653)
++|.|++|+||||+++.|+.++.
T Consensus 296 I~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 296 ILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCcccHHHHHHHHHHHhh
Confidence 88999999999999999999874
No 385
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=85.61 E-value=0.54 Score=55.01 Aligned_cols=24 Identities=33% Similarity=0.250 Sum_probs=20.0
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAIL 140 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l 140 (653)
+.++|.||||||||+++..+...+
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 568999999999999887776654
No 386
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=85.61 E-value=0.42 Score=43.71 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=20.4
Q ss_pred ceEEEECCCCCHHHHHHHHHHhh
Q 006254 117 GGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (653)
-.|+|.|++|+|||+|+..+...
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 35999999999999999998864
No 387
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=85.58 E-value=0.36 Score=45.98 Aligned_cols=21 Identities=24% Similarity=0.265 Sum_probs=19.6
Q ss_pred EEEECCCCCHHHHHHHHHHhh
Q 006254 119 IAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 119 VLL~GppGTGKT~lArala~~ 139 (653)
+||.|++|+|||++|..++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 799999999999999999875
No 388
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=85.58 E-value=0.58 Score=50.38 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=23.3
Q ss_pred CceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.+-|.|.|++|+|||||.+.|..+.+
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~ 94 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGN 94 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCT
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCC
Confidence 45689999999999999999999875
No 389
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=85.56 E-value=0.41 Score=44.26 Aligned_cols=23 Identities=17% Similarity=0.027 Sum_probs=20.5
Q ss_pred ceEEEECCCCCHHHHHHHHHHhh
Q 006254 117 GGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (653)
..|+|.|++|+|||+|+..+...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45999999999999999999863
No 390
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=85.56 E-value=0.31 Score=53.99 Aligned_cols=25 Identities=8% Similarity=0.081 Sum_probs=23.2
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
..|+|.|.+|+||||++++|++.|.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHH
Confidence 4599999999999999999999986
No 391
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=85.54 E-value=0.43 Score=49.97 Aligned_cols=22 Identities=23% Similarity=0.107 Sum_probs=20.2
Q ss_pred eEEEECCCCCHHHHHHHHHHhh
Q 006254 118 GIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~ 139 (653)
-++|+|+||+|||+++..++..
T Consensus 124 i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 124 ITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp EEEEECCTTCTHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999999875
No 392
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=85.50 E-value=0.55 Score=42.88 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=21.6
Q ss_pred CCceEEEECCCCCHHHHHHHHHHhh
Q 006254 115 EIGGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~ 139 (653)
....|+|.|++|+|||+|...+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456999999999999999999764
No 393
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=85.44 E-value=0.34 Score=43.74 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=19.4
Q ss_pred ceEEEECCCCCHHHHHHHHHHh
Q 006254 117 GGIAISGRRGTAKTVMARGLHA 138 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~ 138 (653)
-.|+|.|++|+|||+|.+.+..
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHcC
Confidence 3589999999999999998854
No 394
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=85.44 E-value=0.32 Score=48.28 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=22.1
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|.|.|++|+||||+++.|++.+.
T Consensus 29 ~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 29 FIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp EEEEEESTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999999874
No 395
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=85.38 E-value=0.43 Score=42.95 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=19.6
Q ss_pred eEEEECCCCCHHHHHHHHHHhh
Q 006254 118 GIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~ 139 (653)
.|+|.|++|+|||+|...+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999753
No 396
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=85.29 E-value=0.43 Score=43.48 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=20.7
Q ss_pred ceEEEECCCCCHHHHHHHHHHhh
Q 006254 117 GGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (653)
-.|+|.|++|+|||+|+..+...
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45999999999999999999864
No 397
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=85.28 E-value=0.37 Score=49.96 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=21.1
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAIL 140 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l 140 (653)
.-++|+|+||+|||+++..++...
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHhHHHHHHHHHH
Confidence 349999999999999999998754
No 398
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=85.27 E-value=2 Score=34.05 Aligned_cols=49 Identities=18% Similarity=0.190 Sum_probs=42.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHH
Q 006254 347 AIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELV 402 (653)
Q Consensus 347 ~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~lv 402 (653)
.+++.+...|.+++. |-...+++-|..+|...|+..|+.+||+.|++..
T Consensus 18 ~~~~~v~~~L~e~~~-------ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~~ 66 (68)
T 1taf_A 18 EYEPRVVNQLLEFTF-------RYVTSILDDAKVYANHARKKTIDLDDVRLATEVT 66 (68)
T ss_dssp CBCTHHHHHHHHHHH-------HHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhc
Confidence 688999999999875 4466888999999999999999999999998754
No 399
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=85.24 E-value=0.36 Score=47.26 Aligned_cols=25 Identities=32% Similarity=0.158 Sum_probs=22.9
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.-|.|.|++|+||||+++.|++.+.
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3489999999999999999999986
No 400
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=85.20 E-value=0.34 Score=51.99 Aligned_cols=20 Identities=20% Similarity=0.243 Sum_probs=18.2
Q ss_pred EEEECCCCCHHHHHHHHHHh
Q 006254 119 IAISGRRGTAKTVMARGLHA 138 (653)
Q Consensus 119 VLL~GppGTGKT~lArala~ 138 (653)
++|+||+|+|||+|++.++.
T Consensus 181 ~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 181 TELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHH
Confidence 99999999999999997653
No 401
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=85.05 E-value=0.46 Score=43.84 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=20.4
Q ss_pred ceEEEECCCCCHHHHHHHHHHhh
Q 006254 117 GGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (653)
-.|+|.|++|+|||+|...+...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35999999999999999999864
No 402
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=85.02 E-value=0.36 Score=54.74 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=21.7
Q ss_pred eEEEECCCCCHHHHHHHHHHhhC
Q 006254 118 GIAISGRRGTAKTVMARGLHAIL 140 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l 140 (653)
-|+|.|.+|+||||+++.|++.+
T Consensus 54 lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 54 TVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 39999999999999999999987
No 403
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=85.00 E-value=1 Score=53.51 Aligned_cols=20 Identities=20% Similarity=0.155 Sum_probs=18.5
Q ss_pred EEEECCCCCHHHHHHHHHHh
Q 006254 119 IAISGRRGTAKTVMARGLHA 138 (653)
Q Consensus 119 VLL~GppGTGKT~lArala~ 138 (653)
++|.||.|+||||+.|.++.
T Consensus 665 ~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 665 HIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999854
No 404
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=84.96 E-value=0.39 Score=44.40 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=20.6
Q ss_pred ceEEEECCCCCHHHHHHHHHHhh
Q 006254 117 GGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (653)
..|+|.|++|+|||+|.+.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999874
No 405
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=84.95 E-value=0.42 Score=43.68 Aligned_cols=22 Identities=18% Similarity=0.209 Sum_probs=19.7
Q ss_pred ceEEEECCCCCHHHHHHHHHHh
Q 006254 117 GGIAISGRRGTAKTVMARGLHA 138 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~ 138 (653)
..|+|.|++|+|||+|+..+..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4599999999999999998865
No 406
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=84.88 E-value=0.37 Score=47.68 Aligned_cols=37 Identities=19% Similarity=0.163 Sum_probs=26.8
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCCCCeeeccccccCCCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT 156 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~~~~~v~~~~~nc~p~ 156 (653)
-+++.|.+|+||||++..|+..+. . ....+.+++||.
T Consensus 16 i~~~~GkgGvGKTTl~~~La~~l~-~-g~~v~vvd~D~~ 52 (262)
T 1yrb_A 16 IVVFVGTAGSGKTTLTGEFGRYLE-D-NYKVAYVNLDTG 52 (262)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT-T-TSCEEEEECCSS
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH-C-CCeEEEEeCCCC
Confidence 389999999999999999997764 1 112344556554
No 407
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=84.87 E-value=0.46 Score=44.16 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=20.1
Q ss_pred eEEEECCCCCHHHHHHHHHHhh
Q 006254 118 GIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~ 139 (653)
.|+|.|.+|+|||+|+..+...
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5999999999999999999864
No 408
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=84.84 E-value=0.35 Score=50.16 Aligned_cols=25 Identities=28% Similarity=0.224 Sum_probs=22.3
Q ss_pred CCceEEEECCCCCHHHHHHHHHHhh
Q 006254 115 EIGGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~ 139 (653)
...+|+|.|++|+|||++|..+...
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 3567999999999999999999884
No 409
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=84.83 E-value=0.46 Score=44.32 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=20.5
Q ss_pred ceEEEECCCCCHHHHHHHHHHhh
Q 006254 117 GGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (653)
..|+|.|++|+|||+|...+...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35999999999999999998874
No 410
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=84.82 E-value=0.47 Score=44.09 Aligned_cols=23 Identities=13% Similarity=0.081 Sum_probs=20.8
Q ss_pred ceEEEECCCCCHHHHHHHHHHhh
Q 006254 117 GGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (653)
..|+|.|++|+|||+|+..+...
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999875
No 411
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=84.81 E-value=0.42 Score=43.64 Aligned_cols=23 Identities=13% Similarity=0.245 Sum_probs=20.7
Q ss_pred ceEEEECCCCCHHHHHHHHHHhh
Q 006254 117 GGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (653)
..|+|.|++|+|||+|...+...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999998874
No 412
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=84.79 E-value=0.47 Score=42.92 Aligned_cols=23 Identities=30% Similarity=0.274 Sum_probs=20.4
Q ss_pred CceEEEECCCCCHHHHHHHHHHh
Q 006254 116 IGGIAISGRRGTAKTVMARGLHA 138 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~ 138 (653)
...|+|.|++|+|||+|...+..
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 35699999999999999999965
No 413
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=84.75 E-value=0.44 Score=47.19 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=21.1
Q ss_pred EEEECCCCCHHHHHHHHHHhhCC
Q 006254 119 IAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (653)
+-|.|+||+||||+++.|++.+.
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred eeeECCCCCCHHHHHHHHHHHhC
Confidence 77899999999999999999764
No 414
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=84.71 E-value=0.47 Score=43.55 Aligned_cols=23 Identities=13% Similarity=0.198 Sum_probs=20.5
Q ss_pred ceEEEECCCCCHHHHHHHHHHhh
Q 006254 117 GGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (653)
..|+|.|++|+|||+|+..+...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 45999999999999999999863
No 415
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=84.70 E-value=0.42 Score=43.55 Aligned_cols=23 Identities=13% Similarity=0.076 Sum_probs=20.3
Q ss_pred ceEEEECCCCCHHHHHHHHHHhh
Q 006254 117 GGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (653)
-.|+|.|++|+|||+|+..+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999998753
No 416
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=84.69 E-value=0.42 Score=47.02 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=21.8
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|.|.|.+|+||||+++.|++.+.
T Consensus 23 ~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 23 FITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 388899999999999999999875
No 417
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=84.66 E-value=1 Score=48.52 Aligned_cols=17 Identities=18% Similarity=0.055 Sum_probs=15.4
Q ss_pred ceEEEECCCCCHHHHHH
Q 006254 117 GGIAISGRRGTAKTVMA 133 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lA 133 (653)
..+|+.||+|+|||..+
T Consensus 3 ~~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRV 19 (431)
T ss_dssp CEEEEECCTTSCTTTTH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 57999999999999976
No 418
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=84.51 E-value=0.49 Score=43.35 Aligned_cols=23 Identities=13% Similarity=0.208 Sum_probs=20.3
Q ss_pred ceEEEECCCCCHHHHHHHHHHhh
Q 006254 117 GGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (653)
..|+|.|++|+|||+|...+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35999999999999999998764
No 419
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=84.49 E-value=0.43 Score=43.60 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=21.3
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAIL 140 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l 140 (653)
+-.+|+||.|+|||++..+|.-.+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999998765
No 420
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=84.40 E-value=1.8 Score=34.71 Aligned_cols=49 Identities=20% Similarity=0.085 Sum_probs=37.5
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHcC
Q 006254 353 LKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVIL 404 (653)
Q Consensus 353 l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~ 404 (653)
++.|++.+ ...|......+++-|.-.|..+++..|+.+|+..|+..++.
T Consensus 27 l~~la~~t---~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 27 LRKIAELM---PGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 75 (78)
T ss_dssp HHHHHHTC---TTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC
T ss_pred HHHHHHHc---CCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Confidence 45555433 33466667778888888888899999999999999988764
No 421
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=84.39 E-value=0.4 Score=53.90 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=22.1
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|+|.|.+|+||||+|+.|++.+.
T Consensus 398 ~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 398 TIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEeecCCCCCHHHHHHHHHHHhc
Confidence 389999999999999999999874
No 422
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=84.34 E-value=0.49 Score=49.92 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=21.1
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAIL 140 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l 140 (653)
.-++|+|+||+|||++|..++..+
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 449999999999999999988754
No 423
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=84.31 E-value=0.45 Score=44.20 Aligned_cols=23 Identities=17% Similarity=0.146 Sum_probs=20.5
Q ss_pred ceEEEECCCCCHHHHHHHHHHhh
Q 006254 117 GGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (653)
..|+|.|++|+|||+|++.+...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45999999999999999999874
No 424
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=84.29 E-value=0.4 Score=46.76 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=21.9
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|.|.|++|+||||.++.|++.+.
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 388999999999999999999874
No 425
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=84.12 E-value=1.9 Score=43.25 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=20.6
Q ss_pred ceEEEECCCCCHHHHHHHHHHhh
Q 006254 117 GGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (653)
..|+|.|.+|+|||+|..++...
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999764
No 426
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=84.12 E-value=0.55 Score=44.98 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=23.0
Q ss_pred CCceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 115 EIGGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l~ 141 (653)
...-|+|.|.+|+||||++..+...+.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 345799999999999999999987753
No 427
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=84.09 E-value=0.52 Score=43.38 Aligned_cols=23 Identities=13% Similarity=0.244 Sum_probs=20.5
Q ss_pred ceEEEECCCCCHHHHHHHHHHhh
Q 006254 117 GGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (653)
-.|+|.|++|+|||+|...+...
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45999999999999999998864
No 428
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=84.08 E-value=0.42 Score=49.30 Aligned_cols=22 Identities=18% Similarity=0.119 Sum_probs=20.1
Q ss_pred eEEEECCCCCHHHHHHHHHHhh
Q 006254 118 GIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~ 139 (653)
-++|+|+||+|||++|..++..
T Consensus 100 i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 100 VTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999874
No 429
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=84.01 E-value=0.53 Score=43.05 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=20.4
Q ss_pred ceEEEECCCCCHHHHHHHHHHhh
Q 006254 117 GGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (653)
..|+|.|++|+|||+|...+...
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35999999999999999998764
No 430
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=83.93 E-value=0.49 Score=48.88 Aligned_cols=23 Identities=22% Similarity=0.148 Sum_probs=20.4
Q ss_pred eEEEECCCCCHHHHHHHHHHhhC
Q 006254 118 GIAISGRRGTAKTVMARGLHAIL 140 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l 140 (653)
-++|.|+||+|||+++..++...
T Consensus 70 l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 70 FVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 49999999999999999998643
No 431
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=83.80 E-value=0.55 Score=43.15 Aligned_cols=23 Identities=13% Similarity=0.069 Sum_probs=20.2
Q ss_pred ceEEEECCCCCHHHHHHHHHHhh
Q 006254 117 GGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (653)
-.|+|.|++|+|||+|.+.+...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999998753
No 432
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=83.70 E-value=0.55 Score=43.69 Aligned_cols=23 Identities=13% Similarity=0.001 Sum_probs=20.5
Q ss_pred ceEEEECCCCCHHHHHHHHHHhh
Q 006254 117 GGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (653)
..|+|.|++|+|||+|+..+...
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999998764
No 433
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=83.66 E-value=0.44 Score=44.40 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.2
Q ss_pred CceEEEECCCCCHHHHHHHHHHhh
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~ 139 (653)
...|+|.|++|+|||+|...+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456999999999999999999764
No 434
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=83.64 E-value=0.52 Score=49.53 Aligned_cols=26 Identities=15% Similarity=0.045 Sum_probs=23.4
Q ss_pred CceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~ 141 (653)
..-+.|.|++|+|||||.+.|+....
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34599999999999999999999875
No 435
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=83.60 E-value=0.46 Score=46.68 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=22.2
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|.|.|++|||||++++.|++.++
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999999875
No 436
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=83.60 E-value=0.5 Score=43.59 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=20.5
Q ss_pred ceEEEECCCCCHHHHHHHHHHhh
Q 006254 117 GGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (653)
-.|+|.|++|+|||+|+..+...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999998764
No 437
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=83.58 E-value=0.43 Score=44.11 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=19.9
Q ss_pred eEEEECCCCCHHHHHHHHHHhh
Q 006254 118 GIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~ 139 (653)
.|+|.|++|+|||+|...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5899999999999999998764
No 438
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=83.56 E-value=0.35 Score=47.30 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=20.3
Q ss_pred eEEEECCCCCHHHHHHHHHHhh
Q 006254 118 GIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~ 139 (653)
-|.|.|+.|+||||+++.|+..
T Consensus 22 ~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEECSTTSCHHHHHHTTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 3889999999999999999887
No 439
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=83.42 E-value=0.49 Score=49.45 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=22.1
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.-|.|.|+||+||||+.+.|...+.
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhh
Confidence 4489999999999999999998763
No 440
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=83.41 E-value=0.59 Score=43.69 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.1
Q ss_pred ceEEEECCCCCHHHHHHHHHHhh
Q 006254 117 GGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (653)
..|+|.|++|+|||+|+..+...
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 35999999999999999888763
No 441
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=83.41 E-value=0.58 Score=44.03 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=20.6
Q ss_pred ceEEEECCCCCHHHHHHHHHHhh
Q 006254 117 GGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (653)
..|+|.|++|+|||+|...+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999998764
No 442
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=83.40 E-value=0.53 Score=51.14 Aligned_cols=26 Identities=12% Similarity=0.087 Sum_probs=23.3
Q ss_pred CceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~ 141 (653)
..-+.|.||+|+|||||.+.|+....
T Consensus 157 Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccC
Confidence 34588999999999999999999875
No 443
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=83.39 E-value=0.59 Score=42.86 Aligned_cols=24 Identities=13% Similarity=0.036 Sum_probs=21.0
Q ss_pred CceEEEECCCCCHHHHHHHHHHhh
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~ 139 (653)
...|+|.|++|+|||+|...+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456999999999999999998764
No 444
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=83.37 E-value=0.58 Score=43.95 Aligned_cols=23 Identities=13% Similarity=0.198 Sum_probs=20.3
Q ss_pred ceEEEECCCCCHHHHHHHHHHhh
Q 006254 117 GGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (653)
..|+|.|++|+|||+|+..+...
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45999999999999999998763
No 445
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=83.35 E-value=0.58 Score=43.53 Aligned_cols=23 Identities=13% Similarity=0.143 Sum_probs=20.6
Q ss_pred ceEEEECCCCCHHHHHHHHHHhh
Q 006254 117 GGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (653)
-.|+|.|++|+|||+|...+...
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35999999999999999999864
No 446
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=83.26 E-value=0.59 Score=43.67 Aligned_cols=22 Identities=14% Similarity=0.216 Sum_probs=19.2
Q ss_pred eEEEECCCCCHHHHHHHHHHhh
Q 006254 118 GIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~ 139 (653)
.|+|.|++|+|||+|+..+...
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4999999999999999777653
No 447
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=83.14 E-value=0.85 Score=53.40 Aligned_cols=24 Identities=29% Similarity=0.162 Sum_probs=19.1
Q ss_pred CceEEEECCCCCHHHHHHHHHHhh
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~ 139 (653)
.+.+||.||||||||+++..+...
T Consensus 375 ~~~~lI~GppGTGKT~~i~~~i~~ 398 (802)
T 2xzl_A 375 RPLSLIQGPPGTGKTVTSATIVYH 398 (802)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999887666543
No 448
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=83.12 E-value=0.3 Score=46.37 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=20.0
Q ss_pred ceEEEECCCCCHHHHHHHHHHhh
Q 006254 117 GGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (653)
.-|.|.|++|+|||||.+.|...
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 34999999999999999988654
No 449
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=83.09 E-value=0.58 Score=44.04 Aligned_cols=23 Identities=22% Similarity=0.036 Sum_probs=20.4
Q ss_pred ceEEEECCCCCHHHHHHHHHHhh
Q 006254 117 GGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (653)
-.|+|.|++|+|||+|+..+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999998764
No 450
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=83.09 E-value=0.62 Score=43.36 Aligned_cols=23 Identities=22% Similarity=0.148 Sum_probs=20.2
Q ss_pred ceEEEECCCCCHHHHHHHHHHhh
Q 006254 117 GGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (653)
..|+|.|++|+|||+|...+...
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999998753
No 451
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=83.07 E-value=0.61 Score=43.72 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=21.2
Q ss_pred CceEEEECCCCCHHHHHHHHHHhh
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~ 139 (653)
...|+|.|++|+|||+|+..+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456999999999999999998864
No 452
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=82.92 E-value=0.9 Score=43.60 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=22.4
Q ss_pred CCceEEEECCCCCHHHHHHHHHHhhC
Q 006254 115 EIGGIAISGRRGTAKTVMARGLHAIL 140 (653)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l 140 (653)
...-|+|.|.+|+|||+++..+...+
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34669999999999999999998765
No 453
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=82.85 E-value=0.55 Score=43.84 Aligned_cols=24 Identities=17% Similarity=-0.000 Sum_probs=21.1
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAIL 140 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l 140 (653)
-.|+|.|++|+|||+|+..+...-
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 359999999999999999998753
No 454
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=82.84 E-value=0.61 Score=43.20 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=21.0
Q ss_pred CceEEEECCCCCHHHHHHHHHHhh
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~ 139 (653)
...|+|.|++|+|||+|...+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 346999999999999999998764
No 455
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=82.83 E-value=0.63 Score=43.18 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=20.6
Q ss_pred ceEEEECCCCCHHHHHHHHHHhh
Q 006254 117 GGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (653)
..|+|.|++|+|||+|+..+...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999999764
No 456
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=82.82 E-value=0.63 Score=43.43 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=20.0
Q ss_pred eEEEECCCCCHHHHHHHHHHhh
Q 006254 118 GIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~ 139 (653)
.|+|.|++|+|||+|...+...
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4999999999999999999864
No 457
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=82.76 E-value=0.63 Score=43.36 Aligned_cols=23 Identities=13% Similarity=0.115 Sum_probs=20.4
Q ss_pred ceEEEECCCCCHHHHHHHHHHhh
Q 006254 117 GGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (653)
..|+|.|++|+|||+|...+...
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999999863
No 458
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=82.76 E-value=0.63 Score=43.48 Aligned_cols=23 Identities=17% Similarity=0.140 Sum_probs=20.6
Q ss_pred ceEEEECCCCCHHHHHHHHHHhh
Q 006254 117 GGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (653)
-.|+|.|++|+|||+|...+...
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 45999999999999999998874
No 459
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=82.62 E-value=0.51 Score=43.27 Aligned_cols=23 Identities=9% Similarity=0.105 Sum_probs=20.5
Q ss_pred ceEEEECCCCCHHHHHHHHHHhh
Q 006254 117 GGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (653)
..|+|.|++|+|||+|+..+...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999998863
No 460
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=82.61 E-value=0.65 Score=43.74 Aligned_cols=24 Identities=17% Similarity=0.137 Sum_probs=21.1
Q ss_pred CceEEEECCCCCHHHHHHHHHHhh
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~ 139 (653)
...|+|.|++|+|||+|+..+...
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 356999999999999999999764
No 461
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=82.53 E-value=1 Score=48.05 Aligned_cols=26 Identities=12% Similarity=0.047 Sum_probs=22.6
Q ss_pred CCceEEEECCCCCHHHHHHHHHHhhC
Q 006254 115 EIGGIAISGRRGTAKTVMARGLHAIL 140 (653)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l 140 (653)
....++|+|++|+|||+|++.|+..+
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCChhHHHHHHHHHH
Confidence 34569999999999999999998865
No 462
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=82.50 E-value=0.58 Score=43.90 Aligned_cols=24 Identities=21% Similarity=0.201 Sum_probs=20.8
Q ss_pred CceEEEECCCCCHHHHHHHHHHhh
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~ 139 (653)
...|+|.|++|+|||+|.+.+...
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999999863
No 463
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=82.44 E-value=0.55 Score=48.12 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=21.8
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-+.|.||+|+|||||.+.|..+..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred eEEEECCCCCcHHHHHHHhccccc
Confidence 488999999999999999998775
No 464
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=82.44 E-value=0.63 Score=51.88 Aligned_cols=26 Identities=31% Similarity=0.367 Sum_probs=23.1
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILPP 142 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~ 142 (653)
.-+.|.||.|+|||||.+.|+.++++
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl~~p 73 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQLIP 73 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34889999999999999999998863
No 465
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=82.43 E-value=0.59 Score=42.92 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=19.9
Q ss_pred ceEEEECCCCCHHHHHHHHHHh
Q 006254 117 GGIAISGRRGTAKTVMARGLHA 138 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~ 138 (653)
..|+|.|++|+|||+|+..+..
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 4699999999999999999884
No 466
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=82.38 E-value=0.63 Score=45.50 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=21.2
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAIL 140 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l 140 (653)
..|+|.|++|+|||+|...|...-
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCC
Confidence 469999999999999999998753
No 467
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=82.37 E-value=0.49 Score=51.26 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=21.6
Q ss_pred eEEEECCCCCHHHHHHHHHHhhCC
Q 006254 118 GIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (653)
-|+|.|++|+||||++..|+..+.
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 389999999999999999998774
No 468
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=82.31 E-value=0.61 Score=43.66 Aligned_cols=23 Identities=13% Similarity=0.163 Sum_probs=20.5
Q ss_pred ceEEEECCCCCHHHHHHHHHHhh
Q 006254 117 GGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (653)
-.|+|.|++|+|||+|...+...
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 45999999999999999998764
No 469
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=82.30 E-value=6.5 Score=32.81 Aligned_cols=49 Identities=20% Similarity=0.097 Sum_probs=42.1
Q ss_pred ccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHHH
Q 006254 345 DVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (653)
Q Consensus 345 ~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~ 400 (653)
++.++++++..|+++.+.. ...+.+-+..+|.-.||.+|+.+||..+++
T Consensus 30 g~~vs~~~i~aL~e~~~~~-------~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~R 78 (90)
T 3v9r_A 30 DIKYTPRFINSLLELAYLQ-------LGEMGSDLQAFARHAGRGVVNKSDLMLYLR 78 (90)
T ss_dssp CCCCCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred CceeCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 4889999999999998765 356777888899999999999999988764
No 470
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=82.30 E-value=0.6 Score=49.29 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=22.1
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.-+.|.|++|+|||||.+.|.....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 3589999999999999999998764
No 471
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=82.22 E-value=0.57 Score=48.73 Aligned_cols=23 Identities=9% Similarity=0.096 Sum_probs=19.5
Q ss_pred eEEEECCCCCHHHHHHHHHHhhC
Q 006254 118 GIAISGRRGTAKTVMARGLHAIL 140 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l 140 (653)
-++|+||||+|||+|+-.++...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~ 52 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSY 52 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999987776643
No 472
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=82.10 E-value=0.67 Score=49.17 Aligned_cols=26 Identities=19% Similarity=0.132 Sum_probs=23.1
Q ss_pred CCceEEEECCCCCHHHHHHHHHHhhC
Q 006254 115 EIGGIAISGRRGTAKTVMARGLHAIL 140 (653)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l 140 (653)
..++++|.|++|+|||++++.+...+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999998765
No 473
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=82.06 E-value=0.6 Score=48.45 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=21.5
Q ss_pred EEEECCCCCHHHHHHHHHHhhCC
Q 006254 119 IAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (653)
++|.|++|+||||++..|+..+.
T Consensus 108 I~ivG~~G~GKTT~~~~LA~~l~ 130 (320)
T 1zu4_A 108 FMLVGVNGTGKTTSLAKMANYYA 130 (320)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 88999999999999999999875
No 474
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=81.99 E-value=0.65 Score=51.03 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=23.6
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILPP 142 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~ 142 (653)
.-+.|.||.|+|||||.+.|+.++++
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p 55 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIP 55 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCC
Confidence 56889999999999999999998864
No 475
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=81.97 E-value=0.62 Score=43.94 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=20.7
Q ss_pred ceEEEECCCCCHHHHHHHHHHhh
Q 006254 117 GGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (653)
..|+|.|.+|+|||+|+..+...
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCcCHHHHHHHHHhC
Confidence 45999999999999999999874
No 476
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=81.91 E-value=0.64 Score=43.35 Aligned_cols=24 Identities=13% Similarity=0.076 Sum_probs=21.0
Q ss_pred CceEEEECCCCCHHHHHHHHHHhh
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~ 139 (653)
...|+|.|++|+|||+|...+...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 346999999999999999999863
No 477
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=81.88 E-value=0.58 Score=43.46 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=20.8
Q ss_pred CceEEEECCCCCHHHHHHHHHHhh
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~ 139 (653)
...|+|.|++|+|||+|.+.+...
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 456999999999999999998653
No 478
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=81.88 E-value=0.71 Score=43.65 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=20.5
Q ss_pred ceEEEECCCCCHHHHHHHHHHhh
Q 006254 117 GGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (653)
..|+|.|++|+|||+|...+...
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999998753
No 479
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=81.87 E-value=0.66 Score=44.05 Aligned_cols=25 Identities=12% Similarity=0.076 Sum_probs=21.0
Q ss_pred CCceEEEECCCCCHHHHHHHHHHhh
Q 006254 115 EIGGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~ 139 (653)
..-.|+|.|.+|+|||+|+..+...
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhC
Confidence 3457999999999999999988753
No 480
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=81.82 E-value=0.63 Score=43.94 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=20.5
Q ss_pred ceEEEECCCCCHHHHHHHHHHhh
Q 006254 117 GGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (653)
..|+|.|++|+|||+|+..+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999998764
No 481
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=81.79 E-value=0.66 Score=42.86 Aligned_cols=24 Identities=13% Similarity=0.171 Sum_probs=20.9
Q ss_pred CCceEEEECCCCCHHHHHHHHHHh
Q 006254 115 EIGGIAISGRRGTAKTVMARGLHA 138 (653)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~ 138 (653)
....|+|.|++|+|||+|...+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CeeEEEEECCCCCCHHHHHHHHhc
Confidence 345799999999999999999875
No 482
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=81.57 E-value=0.49 Score=43.56 Aligned_cols=23 Identities=17% Similarity=0.138 Sum_probs=9.9
Q ss_pred ceEEEECCCCCHHHHHHHHHHhh
Q 006254 117 GGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (653)
..|+|.|++|+|||+|+..+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEECCCCC------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45999999999999999988753
No 483
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=81.57 E-value=1 Score=53.45 Aligned_cols=92 Identities=16% Similarity=0.177 Sum_probs=60.6
Q ss_pred cCCceEEEEEeCCCCCCh-hHHHHHHHHHHHHHHhHcCC---CCeEEEEEeecC------------------CcEE----
Q 006254 559 KAGALVIFVVDASGSMAL-NRMQNAKGAALKLLAESYTC---RDQVSIIPFRGD------------------SAEV---- 612 (653)
Q Consensus 559 ~~~~~v~~vvD~SgSM~~-~r~~~ak~a~~~ll~~ay~~---rd~v~li~F~~~------------------~a~~---- 612 (653)
..+-.++||||+|.+.-. .-+..++.++...|.. ... +-+||||+|+.. ..+.
T Consensus 301 p~ppvyvFvIDvS~~av~~g~l~~l~~sI~~~L~~-LP~~~~~~~VGlITFds~Vh~y~l~~~~~g~k~~~~q~qmlvvs 379 (926)
T 1m2v_B 301 PPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDS-IPNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINMMDIA 379 (926)
T ss_dssp CCCCBEEEEEECSHHHHHSCHHHHHHHHHHHTTTT-SCCTTSCCEECEEEESSSEEEEECCCC---------CCEEEEEC
T ss_pred CCCcEEEEEEECCHHHHhhhHHHHHHHHHHHHHHh-CCCCCCCcEEEEEEECCEEEEEecCCcccCCcccccchhhcccc
Confidence 346779999999987622 2466777777777643 333 689999999432 0111
Q ss_pred -------------EcCCCcCHHHHHHHHhcCC------CCCCCchHHHHHHHHHHHhh
Q 006254 613 -------------LLPPSRSIAMARKRLERLP------CGGGSPLAHGLSMGWAKCGE 651 (653)
Q Consensus 613 -------------~lp~t~~~~~~~~~L~~l~------~gG~Tpl~~gl~~a~~~l~~ 651 (653)
++|.......+...|+.|+ ....+.++.||..|..+|+.
T Consensus 380 dl~d~f~P~~~~~Lv~l~e~~~~I~~lLe~L~~~~~~~~~~~~~~G~AL~aA~~lL~~ 437 (926)
T 1m2v_B 380 DLEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGG 437 (926)
T ss_dssp CCSSCCCSCSSSSSEETTTTHHHHHHHHHHHHHHTSSCCCCCCCHHHHHHHHHHHHTT
T ss_pred ccccccCCCcccccccHHHHHHHHHHHHHhhhhhhcCCCCCCccHHHHHHHHHHHHHh
Confidence 1222334556666666553 35778899999999998864
No 484
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=81.55 E-value=0.65 Score=44.34 Aligned_cols=23 Identities=17% Similarity=0.146 Sum_probs=20.9
Q ss_pred ceEEEECCCCCHHHHHHHHHHhh
Q 006254 117 GGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (653)
..|+|.|++|+|||+|++.+...
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999874
No 485
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=81.55 E-value=0.36 Score=47.64 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=20.5
Q ss_pred EEECCCCCHHHHHHHHHHhhCCC
Q 006254 120 AISGRRGTAKTVMARGLHAILPP 142 (653)
Q Consensus 120 LL~GppGTGKT~lArala~~l~~ 142 (653)
.|.||.|+||||+.++|+..+++
T Consensus 31 ~i~GpnGsGKSTll~~i~g~~~~ 53 (227)
T 1qhl_A 31 TLSGGNGAGKSTTMAAFVTALIP 53 (227)
T ss_dssp HHHSCCSHHHHHHHHHHHHHHSC
T ss_pred EEECCCCCCHHHHHHHHhccccc
Confidence 46799999999999999999863
No 486
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=81.51 E-value=5.8 Score=35.76 Aligned_cols=50 Identities=18% Similarity=0.193 Sum_probs=42.9
Q ss_pred cccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHHH
Q 006254 344 KDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (653)
Q Consensus 344 ~~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~ 400 (653)
.++.++++++..|+++++.. ...+.+-+..+|.-.||.+|+.+||..+++
T Consensus 36 ~~~~vS~~ai~aL~El~~~~-------~e~ia~DLe~FAkHAGRKTI~~eDVkLa~R 85 (140)
T 3vh5_A 36 KGVLFSKQTVAAISEITFRQ-------AENFARDLEMFARHAKRSTITSEDVKLLAR 85 (140)
T ss_dssp HTCEECHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHTTCSEECHHHHHHHHT
T ss_pred cCCCcCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 36889999999999998775 346777888899999999999999998875
No 487
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=81.41 E-value=0.63 Score=51.62 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=22.2
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.-++|.|++|+|||||++.++..++
T Consensus 282 ~i~~i~G~~GsGKSTLl~~l~g~~~ 306 (525)
T 1tf7_A 282 SIILATGATGTGKTLLVSRFVENAC 306 (525)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3489999999999999999998764
No 488
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=81.21 E-value=1.4 Score=43.07 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=17.9
Q ss_pred CceEEEECCCCCHHHHHHHHHH
Q 006254 116 IGGIAISGRRGTAKTVMARGLH 137 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala 137 (653)
...+++.||+|+|||++...+.
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHH
Confidence 3569999999999998766553
No 489
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=81.21 E-value=0.6 Score=44.12 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=19.3
Q ss_pred ceEEEECCCCCHHHHHHHHHHh
Q 006254 117 GGIAISGRRGTAKTVMARGLHA 138 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~ 138 (653)
..|+|.|++|+|||+|++.+..
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3599999999999999998754
No 490
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=81.21 E-value=0.71 Score=43.23 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=19.2
Q ss_pred eEEEECCCCCHHHHHHHHHHh
Q 006254 118 GIAISGRRGTAKTVMARGLHA 138 (653)
Q Consensus 118 gVLL~GppGTGKT~lArala~ 138 (653)
.|+|.|++|+|||+|+..+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 499999999999999999865
No 491
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=81.19 E-value=0.71 Score=44.64 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=21.1
Q ss_pred EEEECCCCCHHHHHHHHHHhhCC
Q 006254 119 IAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (653)
|.|.|..|+||||.++.|++.|.
T Consensus 5 I~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 5 ITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 77899999999999999999874
No 492
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=81.14 E-value=0.69 Score=44.07 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.5
Q ss_pred ceEEEECCCCCHHHHHHHHHHhh
Q 006254 117 GGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (653)
..|+|.|++|+|||+|++.+...
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46999999999999999998764
No 493
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=81.13 E-value=3.6 Score=35.78 Aligned_cols=49 Identities=14% Similarity=0.187 Sum_probs=42.2
Q ss_pred ccCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcCCCCccHHHHHHHHH
Q 006254 345 DVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (653)
Q Consensus 345 ~v~is~~~l~~l~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~ 400 (653)
++.++++++..|+++++.. ...+.+-+..+|.-.||.+|+.+||..+++
T Consensus 45 ~~~vS~~ai~aL~El~~~~-------~~~ia~Dl~~fAkHAgRkTI~~eDV~La~R 93 (113)
T 4dra_A 45 EMQFSKQTIAAISELTFRQ-------CENFAKDLEMFARHAKRTTINTEDVKLLAR 93 (113)
T ss_dssp TCCBCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred CCCcCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcCCCccCHHHHHHHHH
Confidence 6889999999999998775 356777888899999999999999988764
No 494
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=81.09 E-value=0.75 Score=47.18 Aligned_cols=24 Identities=17% Similarity=0.066 Sum_probs=21.1
Q ss_pred ceEEEECCCCCHHHHHHHHHHhhCC
Q 006254 117 GGIAISGRRGTAKTVMARGLHAILP 141 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (653)
.-+.|.|++|+|||||.++|. .+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 348899999999999999999 764
No 495
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=81.08 E-value=0.66 Score=50.46 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=20.6
Q ss_pred EEEECCCCCHHHHHHHHHHhhC
Q 006254 119 IAISGRRGTAKTVMARGLHAIL 140 (653)
Q Consensus 119 VLL~GppGTGKT~lArala~~l 140 (653)
++|.|+||+|||+++..++..+
T Consensus 206 iiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 206 IIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998865
No 496
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=81.07 E-value=0.78 Score=43.57 Aligned_cols=24 Identities=17% Similarity=0.099 Sum_probs=20.7
Q ss_pred CceEEEECCCCCHHHHHHHHHHhh
Q 006254 116 IGGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~ 139 (653)
...|+|.|++|+|||+|...+...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 356999999999999999998864
No 497
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=81.06 E-value=0.68 Score=42.97 Aligned_cols=26 Identities=15% Similarity=0.201 Sum_probs=22.4
Q ss_pred cCCCceEEEECCCCCHHHHHHHHHHh
Q 006254 113 DREIGGIAISGRRGTAKTVMARGLHA 138 (653)
Q Consensus 113 ~p~~~gVLL~GppGTGKT~lArala~ 138 (653)
......|+|.|++|+|||+|...+..
T Consensus 13 ~~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 13 NHQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhc
Confidence 34556799999999999999999985
No 498
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=80.99 E-value=0.56 Score=50.71 Aligned_cols=22 Identities=23% Similarity=0.299 Sum_probs=20.4
Q ss_pred EEEECCCCCHHHHHHHHHHhhC
Q 006254 119 IAISGRRGTAKTVMARGLHAIL 140 (653)
Q Consensus 119 VLL~GppGTGKT~lArala~~l 140 (653)
+.|.|++|+|||||.+.|....
T Consensus 45 vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHhCcc
Confidence 8999999999999999999863
No 499
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=80.98 E-value=1 Score=53.98 Aligned_cols=42 Identities=21% Similarity=0.176 Sum_probs=32.2
Q ss_pred eechHHHHHHHHHhccc-CCCceEEEECCCCCHHHHHHHHHHh
Q 006254 97 VVGQDAIKTALLLGAID-REIGGIAISGRRGTAKTVMARGLHA 138 (653)
Q Consensus 97 IvGq~~~k~aL~~~av~-p~~~gVLL~GppGTGKT~lArala~ 138 (653)
.||.+..+..|.-.+.. ....-|.|+|+.|.|||+||+.++.
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~ 172 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHH
Confidence 39999888877443332 1235699999999999999999985
No 500
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=80.96 E-value=0.8 Score=43.10 Aligned_cols=23 Identities=17% Similarity=0.368 Sum_probs=20.2
Q ss_pred ceEEEECCCCCHHHHHHHHHHhh
Q 006254 117 GGIAISGRRGTAKTVMARGLHAI 139 (653)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (653)
..|+|.|.+|+|||+|...+...
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35999999999999999998853
Done!