Query 006255
Match_columns 653
No_of_seqs 160 out of 227
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 20:37:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006255.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006255hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2343 Glucose-repressible pr 100.0 9.5E-93 2.1E-97 770.8 35.1 581 10-648 15-609 (689)
2 PF04112 Mak10: Mak10 subunit, 100.0 2.9E-45 6.2E-50 352.0 12.3 140 44-191 1-161 (168)
3 KOG2343 Glucose-repressible pr 95.5 0.03 6.4E-07 63.6 7.2 201 318-525 431-679 (689)
4 KOG3285 Spindle assembly check 47.8 18 0.0004 34.7 3.2 53 157-209 23-76 (203)
5 PF08632 Zds_C: Activator of m 19.1 70 0.0015 24.2 1.4 9 526-534 43-51 (53)
6 PF00599 Flu_M2: Influenza Mat 16.5 50 0.0011 27.8 0.2 9 105-113 39-47 (97)
7 PF14123 DUF4290: Domain of un 16.0 1.1E+02 0.0024 29.6 2.4 26 501-527 60-85 (176)
8 PF03759 PRONE: PRONE (Plant-s 15.6 5.9E+02 0.013 27.3 7.7 63 102-164 248-351 (365)
9 PF03622 IBV_3B: IBV 3B protei 13.5 1.1E+02 0.0023 24.1 1.2 21 507-527 21-41 (64)
10 COG4298 Uncharacterized protei 13.1 4.5E+02 0.0098 22.3 4.8 40 497-536 15-54 (95)
No 1
>KOG2343 consensus Glucose-repressible protein and related proteins [General function prediction only]
Probab=100.00 E-value=9.5e-93 Score=770.76 Aligned_cols=581 Identities=31% Similarity=0.476 Sum_probs=446.1
Q ss_pred cccCCCCCCCCCCCCCCCcccchhHHHHHHHhcCCCCCccccCCccHHHhhhhhhccCCCCCccccCCCCChhHHHhcCC
Q 006255 10 TMSHQAPERSSIPSGDNTVWADISPLLDAACKELGDGEMIHGENFNLFAAMSALEIMDPKMDSGIVSKYCSLDEAIEDGA 89 (653)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~DiT~~f~~a~~~L~~gelv~~~~F~L~eamsAlEimdpKMDsg~~~~~~~~~e~~~~g~ 89 (653)
++.|...++.+++.+.. +|+|||++|.+||++|++||||||+.|+||||||||||||||||+||....+.+++..+.+.
T Consensus 15 ~~~~~s~~~~~~~~g~~-~wvDvT~lf~eacs~Lk~~elv~dp~F~LFeamsalEImdpKmDsgm~~~~~~l~~~~~~~~ 93 (689)
T KOG2343|consen 15 ELKHGSKTEDSIQNGYV-DWVDVTKLFSEACSELKEGELVKDPLFGLFEAMSALEIMDPKMDSGMVGNLVELDELNEEQA 93 (689)
T ss_pred cccCCcccccccccCCc-ceeeechhHHHHHHhcChhhhhcCCCcchhhhhhhhcccCccccccccCCeeeCCcccchhh
Confidence 34556666667776665 59999999999999999999999999999999999999999999999876666666666666
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCccchhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 006255 90 APVPLSHDKTIDVQSIIDIMDHLLACEATWHSGHSLAQTVFSCIYLLRLDRTSSHAILHSYCRVIRATCKAVVSVVSDAR 169 (653)
Q Consensus 90 ~p~~~~~~~~l~~~evi~I~D~ll~~e~~Wl~G~sL~qTv~tc~Y~~~~~~~~~~~vL~a~~~~l~~~c~~v~~~i~~~~ 169 (653)
++.+...+.+++++++++|||+||+|+++||+|+|++||||||+|+|.|.++....++.+||.+++++|++|.+.++.|.
T Consensus 94 l~~~~~~d~~~~~~~li~i~d~Ll~C~~~W~e~~sl~qtv~sC~yv~~~~~~~~~~l~~~f~l~i~k~cd~v~~~~~~a~ 173 (689)
T KOG2343|consen 94 LKVGAIKDPDVTLPSLIGIMDTLLCCLITWLEGHSLAQTVFSCLYVHSPLRIEDKALLFAFCLAIRKICDIVVKEVSKAA 173 (689)
T ss_pred hcccccccCcCCHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66665556788999999999999999999999999999999999999999988777777999999999999999999999
Q ss_pred CccccccccccCCCCCCCCCchhHhhhHHHHHHHHHHHHhhccCCCcchhhhccccccccccchhhhHHHHHHHHHHHHH
Q 006255 170 THEEEDLFSMTYGLPLDGDGDEKCLSFLNAVEETICRQLRACKAPSSKKRVLEDIEPLQHNLDLEEGFCKALLCRLRFRK 249 (653)
Q Consensus 170 v~EEEDf~~~~~g~~l~~~~~~~~~~~L~~~e~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Al~~RL~fr~ 249 (653)
++||||+++.+||.++..+.+.+-+-+.+.+|+...+.++.|++.. .....+|++.|+.++.
T Consensus 174 v~EEED~~s~~~~~~f~~~~~ak~l~l~s~~e~~~de~~r~~k~lr------------------~~~~~~~~~~~i~~~~ 235 (689)
T KOG2343|consen 174 VFEEEDLQSFSMTSGFLMNEPAKDLLLTSSLEDLEDEMIRRCKSLR------------------STMLGDAELERIQLRI 235 (689)
T ss_pred hcchhhhhhhccCCCCccccccchHHHHhHHHHHHHHHHHHHHHhh------------------hhhhhhhhhhHHHhhh
Confidence 9999999999999999988766655555666666666777775422 1123468888999999
Q ss_pred HHHHHHhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCcccCCCC-CCCCCcChhhhhhcCCCC
Q 006255 250 HFFHTLACMRRPQGRGFEMARKHIASCILELESILKSAEFLRFGVCGTCEDGIEDKTTASG-HTPIGFDASLNSRSAAPT 328 (653)
Q Consensus 250 ~~l~~l~~l~~~~~~~~~~a~~~~~~~~~~L~~i~~t~~~l~~~~~~~~~~~~~~~~~~s~-~~~~~F~~~I~rrL~~~~ 328 (653)
++.+..... .++. ..+.+..+..+...++.+..+. +++| ....+|+|.||.|+.++.
T Consensus 236 ~~~~~~~~s---------~~~~----~~d~~~~~~~~v~~~~~~~~~~---------~~~~~~l~~~~e~~i~~~~~~~~ 293 (689)
T KOG2343|consen 236 HLLRVFERS---------LIRR----TIDALHLIANLVKEIRPQVSGL---------EGDGKELILAFEPRIQARSVPEA 293 (689)
T ss_pred hhHHHHHHH---------HHHH----HHHHHHHHHHhhhhcccccccC---------CCccccceeeccchHHhhccccc
Confidence 988766431 1112 2223444444443332211110 0111 112299999999999999
Q ss_pred CCccccccCHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHhccc-CCchhHHHHHHHhHhcCCccccccchHHHH
Q 006255 329 PPRAIKILSWKRAVEYFVKLLHDLDVICSYSLDPSLEGVLRFVVQFQKS-KPDLVARAHLQVLLVQDGKLYGRYPIFAVI 407 (653)
Q Consensus 329 PPR~i~~~s~~ea~~~~~~l~~dl~~i~~~~~~~~~~~~l~f~~~F~k~-~p~v~aRsllq~~l~~d~~ilG~~~~~~~l 407 (653)
|||.|++.+++.+++.+..+++|++.+|.++...+..+..+|...|.+. ++||++|+++|++++ |+...|...+.+++
T Consensus 294 ~pR~iki~~~e~~yq~~~~~asri~~~~~v~k~~s~l~~y~f~~aftkl~~~~v~~rs~lq~~~~-dn~~~~~~~~~~~l 372 (689)
T KOG2343|consen 294 PPRNIKITGRELEYQRCLAVASRVKFILNVTKLASSLSAYTFLIAFTKLETSCVIERSLLQLLFA-DNLSAGHNDQPQSL 372 (689)
T ss_pred CcccCCCCCCchHHHHHHHHHhhhhhhhcccchhhhhhHHHHHHHHHhcccchHHHHHHHHHHHH-HHHhhcccchhHHH
Confidence 9999999999999999999999999999998777888899999999976 599999999999777 77777777777766
Q ss_pred H---HHcCCCCCCCCchhHHHHHHHH--HHHHHHHHHHHHccCcchHHhhhhhhHhcHHHHHHHHHHHHHHhhcccccCC
Q 006255 408 T---KASALPEFTKNHDIQKSECFMQ--LGQLVINMLKILCTNAAWQRRKLGKILQDWRVIYVQLELALRNEVGEVSSNM 482 (653)
Q Consensus 408 ~---~~~~~P~~~~~~~~~~~~f~~~--~~~~~~~~l~~~~~Nr~RqRr~l~~~l~~w~~LQ~q~E~~~~~~~~~~~~~~ 482 (653)
. ..+..|..+.-..+-+....++ ....+..++++|++|+||||.++.+.+. ..|.- .++.+. +..
T Consensus 373 ~~~iq~~~s~~~l~~~~pi~~~~i~q~~~~~~~~~~~~~c~~n~~r~~~kl~~l~~-----~~q~~--~~r~l~--~~~- 442 (689)
T KOG2343|consen 373 ELSIQAQFSPTPLNFDHPIMMDLIQQSSISNAYGTFYESCGANLARQRDKLERLIN-----HNQLR--LQRLLP--PTF- 442 (689)
T ss_pred HHhhhhhcCCCcccccCchhhhhhhhhhhhhhHHHHHHHHhhhhHhHHHHHHhhhc-----chHHH--hhhccc--ccc-
Confidence 4 3344454442111123333332 2367888999999999999999999888 12211 111110 000
Q ss_pred CCccchhhhhhhHHHHHHHHHHHHHHHHHHHhccccccCccchhHHHHHHHHHHHHHHHhHhHhhh-------hcchhhh
Q 006255 483 DDEKMSVKILRHVLNWVEEQTYWIASRFLMLGFELDLYSPSEYCMVYWYLYVVLIKLAEKTHFRMA-------VSNEPIK 555 (653)
Q Consensus 483 ~~~~~s~~~~~~~~swv~~~~l~im~~~lllGFELeLY~p~E~~~mYWYl~~l~~~L~~~~~~~~~-------~~~~~~k 555 (653)
+...++ ..+++|++++++++|++|+++||+||||+|+|++|||||+|++++++......+.. +++..++
T Consensus 443 -~~~~s~---~~~~~~~~~~~~~~~~~f~~~gf~ldly~p~E~~yiyWyi~~i~~~~~~~~l~r~~~i~~~~~q~~e~~~ 518 (689)
T KOG2343|consen 443 -PRYTSL---HKALTWVFVNKLLPMIRFFMSGFDLDLYNPHEYYYIYWYIYEILTHLEVSALFRVLDIVLNIEQIHEENK 518 (689)
T ss_pred -cchhhh---hhhhhhHHHHHHHHHHHHHhhchhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 122232 23899999999999999999999999999999999999999999887755433332 2333333
Q ss_pred hhccCcccCcchhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCCCCCChhHHHHhccccccccCCCCCCC
Q 006255 556 RKGKKKKDSLKDVAKESRVHPAILFLQCHMCLAEGLTMMLAALRNDLMVLQSQNPFNTEQERFLQHFELLQKACIPDHIS 635 (653)
Q Consensus 556 ~k~k~KK~~~k~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~L~~~g~i~~p~~~f~~e~lRye~RfkpF~si~~P~~~~ 635 (653)
++.|-|+.+++ .+...+...+.+++|+++||+|+.+++++|.+.|+|+.|+.+|++|++||++||+||.++++|+|+.
T Consensus 519 ~~~s~~~~~lk--~t~~~~~~~v~~~~a~~~l~~G~~~~~val~~~G~I~~Pk~~f~nE~~ry~~rF~PF~sl~~P~~~~ 596 (689)
T KOG2343|consen 519 KKLSDKMEKLK--ATKRFLNYLVLFLNAIKSLCKGMLRLFVALPRDGIILKPKGKFDNEELRYNRRFEPFNSLGVPPPVS 596 (689)
T ss_pred hhhccccccch--hhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccCCCCCcchHHHHHHHhhhhHhhcCCCCCcc
Confidence 33331111111 1112245678899999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhhcccCcc
Q 006255 636 YPSFKESTSYARL 648 (653)
Q Consensus 636 ye~f~~~~~~~~~ 648 (653)
|++|+...+..+.
T Consensus 597 Ye~Fk~~~~~~q~ 609 (689)
T KOG2343|consen 597 YEQFKGHSDIRQR 609 (689)
T ss_pred HHHHhhhhHHhhc
Confidence 9999998775544
No 2
>PF04112 Mak10: Mak10 subunit, NatC N(alpha)-terminal acetyltransferase; InterPro: IPR007244 NatC N(alpha)-terminal acetyltransferases contain Mak10p, Mak31p and Mak3p subunits. All three subunits are associated with each other to form the active complex [].
Probab=100.00 E-value=2.9e-45 Score=352.02 Aligned_cols=140 Identities=45% Similarity=0.740 Sum_probs=124.4
Q ss_pred CCCCccccCCccHHHhhhhhhccCCCCCccccCCCC----ChhHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 006255 44 GDGEMIHGENFNLFAAMSALEIMDPKMDSGIVSKYC----SLDEAIEDGAAPVPLSHDKTIDVQSIIDIMDHLLACEATW 119 (653)
Q Consensus 44 ~~gelv~~~~F~L~eamsAlEimdpKMDsg~~~~~~----~~~e~~~~g~~p~~~~~~~~l~~~evi~I~D~ll~~e~~W 119 (653)
++|||||+++|+|||||||+||||||||||++.+.. ++++++..|. ++++++|||||||+||+||++|
T Consensus 1 k~gelv~~~~F~L~eamsAlEimDpKMDsG~~~~~~~~~~~~~~~~~~~~--------~~l~~~evi~I~D~Ll~~e~~W 72 (168)
T PF04112_consen 1 KPGELVKDPNFSLFEAMSALEIMDPKMDSGLIPLGEEEIFSLEEAFDPGN--------KPLSPEEVIGIMDRLLACEVSW 72 (168)
T ss_pred CCCceeecCCCCHHHHhhHHHhcCCCCCccccCCCccchhhHHHHhcCCC--------CCCCHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999976432 3555555443 4678999999999999999999
Q ss_pred hcCCCccchhhhhhhcccc-----------------cccchhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccccccCC
Q 006255 120 HSGHSLAQTVFSCIYLLRL-----------------DRTSSHAILHSYCRVIRATCKAVVSVVSDARTHEEEDLFSMTYG 182 (653)
Q Consensus 120 l~G~sL~qTv~tc~Y~~~~-----------------~~~~~~~vL~a~~~~l~~~c~~v~~~i~~~~v~EEEDf~~~~~g 182 (653)
|+||||+||||||+|+|+. .....+.||+|||.|++|+|++|++.|++|++||||||++++||
T Consensus 73 l~G~sL~qTv~TC~Y~~~l~~~~~~~~~~~~~~~~~~~~l~~~vL~a~~~g~lk~~~~v~~~i~~~~v~EEEDf~~~~~~ 152 (168)
T PF04112_consen 73 LEGYSLPQTVFTCLYLHHLLEPYPSSLREDSFSRSTPDQLVDKVLRAYCLGLLKFCDLVREIISSGDVYEEEDFNTQTYG 152 (168)
T ss_pred HcCCcHHHHHHHHHHHHHhhhhcccchhhhcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCcccCC
Confidence 9999999999999999983 12235789999999999999999999999999999999999999
Q ss_pred CCCCCCCch
Q 006255 183 LPLDGDGDE 191 (653)
Q Consensus 183 ~~l~~~~~~ 191 (653)
++++++.+.
T Consensus 153 ~~l~~~~~~ 161 (168)
T PF04112_consen 153 LNLLSEVPV 161 (168)
T ss_pred CccccCCCH
Confidence 999998764
No 3
>KOG2343 consensus Glucose-repressible protein and related proteins [General function prediction only]
Probab=95.52 E-value=0.03 Score=63.64 Aligned_cols=201 Identities=10% Similarity=-0.006 Sum_probs=119.4
Q ss_pred hhhhhhcCCCCCCccccccC--------------H------------HHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHH
Q 006255 318 ASLNSRSAAPTPPRAIKILS--------------W------------KRAVEYFVKLLHDLDVICSYSLDPSLEGVLRFV 371 (653)
Q Consensus 318 ~~I~rrL~~~~PPR~i~~~s--------------~------------~ea~~~~~~l~~dl~~i~~~~~~~~~~~~l~f~ 371 (653)
+.+++|.+.+..|+....+. + ..-+-|+-.++..+...+.++.-...++++.+.
T Consensus 431 q~~~~r~l~~~~~~~~s~~~~~~~~~~~~~~~~~~f~~~gf~ldly~p~E~~yiyWyi~~i~~~~~~~~l~r~~~i~~~~ 510 (689)
T KOG2343|consen 431 QLRLQRLLPPTFPRYTSLHKALTWVFVNKLLPMIRFFMSGFDLDLYNPHEYYYIYWYIYEILTHLEVSALFRVLDIVLNI 510 (689)
T ss_pred HHHhhhcccccccchhhhhhhhhhHHHHHHHHHHHHHhhchhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45558999999999888766 1 111223333444444444443334556666667
Q ss_pred HHhcccCCchhH-H-HHHHH-hHhcCCccccccchHHHHH---HHcCCCC---------CCCCchhHHHHHHHHH-----
Q 006255 372 VQFQKSKPDLVA-R-AHLQV-LLVQDGKLYGRYPIFAVIT---KASALPE---------FTKNHDIQKSECFMQL----- 431 (653)
Q Consensus 372 ~~F~k~~p~v~a-R-sllq~-~l~~d~~ilG~~~~~~~l~---~~~~~P~---------~~~~~~~~~~~f~~~~----- 431 (653)
..+...+++.-. | ..+|. ..+.+-.|++.+-+.++.. +.++.+. ...+.+ -..|..++
T Consensus 511 ~q~~e~~~~~~s~~~~~lk~t~~~~~~~v~~~~a~~~l~~G~~~~~val~~~G~I~~Pk~~f~nE--~~ry~~rF~PF~s 588 (689)
T KOG2343|consen 511 EQIHEENKKKLSDKMEKLKATKRFLNYLVLFLNAIKSLCKGMLRLFVALPRDGIILKPKGKFDNE--ELRYNRRFEPFNS 588 (689)
T ss_pred HHHHHhchhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccCCCCCcchH--HHHHHHhhhhHhh
Confidence 677655555433 2 22332 2222334555555554432 3333332 111111 11232322
Q ss_pred --HHHHHHHHHHHccCcchHHhhhhhhHhcHHHHHHHHHHHHHHhhcccccCCCCccchhhhhhhHHHHHHHHHHHHHHH
Q 006255 432 --GQLVINMLKILCTNAAWQRRKLGKILQDWRVIYVQLELALRNEVGEVSSNMDDEKMSVKILRHVLNWVEEQTYWIASR 509 (653)
Q Consensus 432 --~~~~~~~l~~~~~Nr~RqRr~l~~~l~~w~~LQ~q~E~~~~~~~~~~~~~~~~~~~s~~~~~~~~swv~~~~l~im~~ 509 (653)
.-+.....+.-|.|+.|||+ +.+..+.....|..++..-....++ .+.+..-..+..++.+|++.+.+..|.+
T Consensus 589 l~~P~~~~Ye~Fk~~~~~~q~~-~~~ieel~~~aqk~f~~ak~~L~ni----~n~~~E~~~llkva~~N~v~~NlL~~~~ 663 (689)
T KOG2343|consen 589 LGVPPPVSYEQFKGHSDIRQRD-LGSIEELFATAQKSFDEAKNGLENI----DNKGEEQNQLLKVAKTNIVAVNLLCMDH 663 (689)
T ss_pred cCCCCCccHHHHhhhhHHhhcc-ccchHHHHHHHHHHHHHHHHHHhcC----CCccHHHHHHHHHhhhhHHHHHHHHhhh
Confidence 23445677888999999999 9999999999988877532212121 1122222357789999999999999999
Q ss_pred HHHHhccccccCccch
Q 006255 510 FLMLGFELDLYSPSEY 525 (653)
Q Consensus 510 ~lllGFELeLY~p~E~ 525 (653)
.+..||++|+|.-++-
T Consensus 664 sle~~~~~e~~~~~~p 679 (689)
T KOG2343|consen 664 SLESKVELELDFEHHP 679 (689)
T ss_pred hHhhhccccceecccc
Confidence 9999999999877654
No 4
>KOG3285 consensus Spindle assembly checkpoint protein [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=47.80 E-value=18 Score=34.73 Aligned_cols=53 Identities=21% Similarity=0.245 Sum_probs=38.5
Q ss_pred HHHHHHHHHhhcCCccccccc-cccCCCCCCCCCchhHhhhHHHHHHHHHHHHh
Q 006255 157 TCKAVVSVVSDARTHEEEDLF-SMTYGLPLDGDGDEKCLSFLNAVEETICRQLR 209 (653)
Q Consensus 157 ~c~~v~~~i~~~~v~EEEDf~-~~~~g~~l~~~~~~~~~~~L~~~e~~~~~~l~ 209 (653)
+|+.+++++-..++|-+|||+ ...||++++-..++++-..++.+-..+.+=|.
T Consensus 23 f~y~iNSILyQRgiYPaEdF~~vkKYgLtllvs~D~elk~f~~~ilsQ~~~WL~ 76 (203)
T KOG3285|consen 23 FEYGINSILYQRGIYPAEDFVRVKKYGLTLLVSHDEELKTFIRNILSQVHEWLS 76 (203)
T ss_pred HHhhhhHHHHhccCCcHHHhhHHHhcCceEEEecCHHHHHHHHHHHHHHHHHHH
Confidence 567788899999999999997 57999999987776654555444433333333
No 5
>PF08632 Zds_C: Activator of mitotic machinery Cdc14 phosphatase activation C-term; InterPro: IPR013941 This region of the Zds1 protein is critical for sporulation and has also been shown to suppress the calcium sensitivity of Zds1 deletions []. The C-terminal motif is common to both Zds1 and Zds2 proteins, both of which are putative interactors of Cdc55 and are required for the completion of mitotic exit and cytokinesis. They both contribute to timely Cdc14 activation during mitotic exit and are required downstream of separase to facilitate nucleolar Cdc14 release[].
Probab=19.15 E-value=70 Score=24.23 Aligned_cols=9 Identities=44% Similarity=1.317 Sum_probs=6.6
Q ss_pred hHHHHHHHH
Q 006255 526 CMVYWYLYV 534 (653)
Q Consensus 526 ~~mYWYl~~ 534 (653)
.+||||+..
T Consensus 43 NfMy~YL~~ 51 (53)
T PF08632_consen 43 NFMYWYLNL 51 (53)
T ss_pred HHHHHHHHh
Confidence 358999864
No 6
>PF00599 Flu_M2: Influenza Matrix protein (M2); InterPro: IPR002089 This entry contains Influenza virus matrix protein 2. It is an integral membrane protein that is expressed on the infected cell surface and incorporated into virions where it is a minor component. The protein spans the viral membrane with an extracellular amino-terminus and a cytoplasmic carboxy-terminus. The transmembrane domain of the M2 protein forms the channel pore. The M2 protein, which forms a homotetramer, has H+ ion channel which was found to be regulated by pH [ and may have a pivotal role in the biology of Influenza virus infection [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015992 proton transport, 0033644 host cell membrane, 0055036 virion membrane; PDB: 2L0J_A 2KWX_B 2KIH_A 2RLF_A 1MP6_A 2LJB_D 2LJC_A 2H95_B 1NYJ_B 3BKD_E ....
Probab=16.51 E-value=50 Score=27.78 Aligned_cols=9 Identities=44% Similarity=0.730 Sum_probs=5.9
Q ss_pred HHHHHHHHH
Q 006255 105 IIDIMDHLL 113 (653)
Q Consensus 105 vi~I~D~ll 113 (653)
++||+||||
T Consensus 39 iLWI~DRlf 47 (97)
T PF00599_consen 39 ILWILDRLF 47 (97)
T ss_dssp HHHHHHHCT
T ss_pred HHHHHHHHH
Confidence 466777765
No 7
>PF14123 DUF4290: Domain of unknown function (DUF4290)
Probab=15.96 E-value=1.1e+02 Score=29.61 Aligned_cols=26 Identities=31% Similarity=0.522 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHhccccccCccchhH
Q 006255 501 EQTYWIASRFLMLGFELDLYSPSEYCM 527 (653)
Q Consensus 501 ~~~l~im~~~lllGFELeLY~p~E~~~ 527 (653)
.||+|= .-|+++||+||+=+|+|.+.
T Consensus 60 ~hKLWD-hL~ImS~FkLDVD~Py~ip~ 85 (176)
T PF14123_consen 60 KHKLWD-HLFIMSDFKLDVDSPYPIPS 85 (176)
T ss_pred HHHHHH-HHHHHhCCCccCCCCCCCCC
Confidence 366666 66789999999999999876
No 8
>PF03759 PRONE: PRONE (Plant-specific Rop nucleotide exchanger); InterPro: IPR005512 In plants, the small GTP-binding proteins called Rops work as signalling switches that control growth, development and plant responses to various environmental stimuli. Rop proteins (Rho of plants, Rac-like and atRac in Arabidopsis thaliana (Mouse-ear cress)) belong to the Rho family of Ras-related GTP-binding proteins that turn on signalling pathways by switching from a GDP-bound inactive to a GTP-bound active conformation. Activation depends on guanine nucleotide exchange factors (GEFs) that catalyse the otherwise slow GDP dissociation for subsequent GTP binding. The plant-specific RopGEFs represent a unique family of exchange factor that display no homology to any known RhoGEFs from animals and fungi. They comprise a highly conserved catalytic domain termed PRONE (plant-specific Rop nucleotide exchanger) with exclusive substrate specificity for members of the Rop family. The PRONE domain has been shown to be necessary and sufficient to promote nucleotide release from Rop [, , ]. The PRONE domain can be divided into three highly conserved subdomains separated by two short stretches of variable amino acid residues [, ]. It is approximately 370 residues in length and displays an almost all alpha-helical structure except for a beta-turn that protrudes from the main body of the molecule. The overall structure of the PRONE domain can be divided into two subdomains, the first one including helices alpha1-5 and alpha13, the second alpha6-12 [].; GO: 0005089 Rho guanyl-nucleotide exchange factor activity; PDB: 2NTX_B 2NTY_B 2WBL_A.
Probab=15.59 E-value=5.9e+02 Score=27.33 Aligned_cols=63 Identities=22% Similarity=0.368 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcC-------CCc--------------------cchhhhhhhccccc--------------c
Q 006255 102 VQSIIDIMDHLLACEATWHSG-------HSL--------------------AQTVFSCIYLLRLD--------------R 140 (653)
Q Consensus 102 ~~evi~I~D~ll~~e~~Wl~G-------~sL--------------------~qTv~tc~Y~~~~~--------------~ 140 (653)
.-+++.+.||+=+.++.|..- .|. +.|++-|++-..|. +
T Consensus 248 EH~~le~~NRvEAai~vWrrK~~~k~~ksSWg~~vkdl~~~~dK~e~l~eRAEtlL~~LK~RfPgl~QT~LD~~KIQyNk 327 (365)
T PF03759_consen 248 EHKALELANRVEAAIYVWRRKICEKDSKSSWGSMVKDLMSDGDKRELLAERAETLLLCLKQRFPGLPQTSLDISKIQYNK 327 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHCH---------------------HHHHHHHHHHHHHHHHHHHHHSTT----HHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCccchhhhcccccccchHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHccc
Confidence 348999999999999999642 234 67888888887763 1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHH
Q 006255 141 TSSHAILHSYCRVIRATCKAVVSV 164 (653)
Q Consensus 141 ~~~~~vL~a~~~~l~~~c~~v~~~ 164 (653)
...+.+|.+|..++-.+...|...
T Consensus 328 DVG~aILESYSRVLEsLAfnI~sR 351 (365)
T PF03759_consen 328 DVGQAILESYSRVLESLAFNILSR 351 (365)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 224678999998887766555544
No 9
>PF03622 IBV_3B: IBV 3B protein ; InterPro: IPR005295 These proteins are the product of ORF 3B from Infectious bronchitis virus). Currently, the function of this protein remains unknown [].
Probab=13.47 E-value=1.1e+02 Score=24.10 Aligned_cols=21 Identities=14% Similarity=0.419 Sum_probs=16.9
Q ss_pred HHHHHHHhccccccCccchhH
Q 006255 507 ASRFLMLGFELDLYSPSEYCM 527 (653)
Q Consensus 507 m~~~lllGFELeLY~p~E~~~ 527 (653)
-++++-+-++.+||.|+|.++
T Consensus 21 ~Lq~ISsvl~t~iFDPFE~cy 41 (64)
T PF03622_consen 21 NLQHISSVLNTEIFDPFEVCY 41 (64)
T ss_pred HHHHHHHHHhhhhcCCeeEEE
Confidence 355667778999999999875
No 10
>COG4298 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=13.12 E-value=4.5e+02 Score=22.34 Aligned_cols=40 Identities=18% Similarity=0.421 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHhccccccCccchhHHHHHHHHHH
Q 006255 497 NWVEEQTYWIASRFLMLGFELDLYSPSEYCMVYWYLYVVL 536 (653)
Q Consensus 497 swv~~~~l~im~~~lllGFELeLY~p~E~~~mYWYl~~l~ 536 (653)
+|+.+.....|+-|.++||-+=+--.+=+--=|||+..+.
T Consensus 15 awi~f~waafg~s~~m~~~gi~~lPVD~w~KGy~~MG~lf 54 (95)
T COG4298 15 AWIMFNWAAFGASYFMLGLGIWLLPVDLWTKGYWAMGILF 54 (95)
T ss_pred hhHhHHHHHHHHHHHHHHHHhheechHHHHHHHHHHHHHH
Confidence 6777777888999999999886666667777899997764
Done!