Query 006255
Match_columns 653
No_of_seqs 160 out of 227
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 20:07:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006255.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006255hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bkd_A Transmembrane domain of 17.6 37 0.0013 20.8 0.6 10 104-113 17-26 (26)
2 1kvd_A SMK toxin; halotolerant 13.4 1E+02 0.0035 22.3 2.1 18 106-123 38-55 (63)
3 2kih_A Matrix protein 2; S31N, 12.9 89 0.003 21.4 1.6 10 104-113 21-30 (43)
4 2ntx_A EMB|CAB41934.1, prone8; 10.4 9.6E+02 0.033 24.3 8.8 78 78-164 234-347 (365)
5 2ko4_A Mediator of RNA polymer 9.3 91 0.0031 25.0 0.8 19 19-38 30-48 (81)
6 3lbw_A M2 protein; proton chan 9.0 97 0.0033 18.5 0.6 9 104-112 14-22 (23)
7 2lqx_A Trypsin inhibitor BWI-2 11.6 76 0.0026 21.1 0.0 10 442-451 10-19 (41)
8 2ljb_A M2 protein, BM2 protein 8.4 1.3E+02 0.0044 19.9 1.0 11 104-114 21-31 (35)
9 3g27_A 82 prophage-derived unc 6.5 4.4E+02 0.015 21.8 3.7 24 582-605 72-95 (96)
10 2juc_A PRE-mRNA-splicing facto 6.3 1.4E+02 0.0049 22.5 0.6 34 30-63 6-49 (59)
No 1
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=17.56 E-value=37 Score=20.80 Aligned_cols=10 Identities=40% Similarity=0.508 Sum_probs=6.5
Q ss_pred HHHHHHHHHH
Q 006255 104 SIIDIMDHLL 113 (653)
Q Consensus 104 evi~I~D~ll 113 (653)
-++||.|||+
T Consensus 17 LiLwIldrlf 26 (26)
T 3bkd_A 17 LILWILDRLX 26 (26)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHhhcC
Confidence 3578888875
No 2
>1kvd_A SMK toxin; halotolerant yeast; 1.80A {Pichia farinosa} SCOP: d.70.1.2 PDB: 1kve_A
Probab=13.43 E-value=1e+02 Score=22.26 Aligned_cols=18 Identities=33% Similarity=0.671 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 006255 106 IDIMDHLLACEATWHSGH 123 (653)
Q Consensus 106 i~I~D~ll~~e~~Wl~G~ 123 (653)
.+|+--|-.-|+.||+|.
T Consensus 38 agilailqgfevnwhngg 55 (63)
T 1kvd_A 38 AGILAILQGFEVNWHNGG 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhcceeeeecCC
Confidence 356666778899999984
No 3
>2kih_A Matrix protein 2; S31N, proton channel, cell membrane, disulfide bond, hydrogen ION transport, ION transport, ionic channel, membrane; NMR {Influenza a virus} PDB: 2rlf_A* 2l0j_A 2kwx_A
Probab=12.90 E-value=89 Score=21.41 Aligned_cols=10 Identities=40% Similarity=0.587 Sum_probs=7.9
Q ss_pred HHHHHHHHHH
Q 006255 104 SIIDIMDHLL 113 (653)
Q Consensus 104 evi~I~D~ll 113 (653)
-++||.|||+
T Consensus 21 LiLwildRlf 30 (43)
T 2kih_A 21 LILWILDRLF 30 (43)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4678899987
No 4
>2ntx_A EMB|CAB41934.1, prone8; dimer, guanine nucleotide exchange factor, signaling protein; HET: MSE; 2.20A {Arabidopsis thaliana} PDB: 2nty_A* 2wbl_A
Probab=10.37 E-value=9.6e+02 Score=24.28 Aligned_cols=78 Identities=17% Similarity=0.290 Sum_probs=49.6
Q ss_pred CCChhHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC-------c---------------cchhhhhhhc
Q 006255 78 YCSLDEAIEDGAAPVPLSHDKTIDVQSIIDIMDHLLACEATWHSGHS-------L---------------AQTVFSCIYL 135 (653)
Q Consensus 78 ~~~~~e~~~~g~~p~~~~~~~~l~~~evi~I~D~ll~~e~~Wl~G~s-------L---------------~qTv~tc~Y~ 135 (653)
..++++.+..- +++ +.-+++.+.||+=+.++.|..-.. . +.|++-|++-
T Consensus 234 ~Fspe~ll~~l----dls-----sEH~~le~anRiEAsi~vWrrk~~~k~~kssW~~~~~~dK~~~l~eRAEtlL~~LKq 304 (365)
T 2ntx_A 234 WFDPEQFLAML----DMS-----TEHKVLDLKNRIEASVVIWKRKLHTKDTKSSWGSAVSLEKRELFEERAETILVLLKQ 304 (365)
T ss_dssp SCCHHHHHHTS----CCC-----SHHHHHHHHHHHHHHHHHHHHC--------------CHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHhc----cCc-----cHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccchhHHHHHHHHHHHHHHHHHH
Confidence 45677766531 121 235899999999999999975431 1 3466667666
Q ss_pred cccc--------------ccchhHHHHHHHHHHHHHHHHHHHH
Q 006255 136 LRLD--------------RTSSHAILHSYCRVIRATCKAVVSV 164 (653)
Q Consensus 136 ~~~~--------------~~~~~~vL~a~~~~l~~~c~~v~~~ 164 (653)
..|. +...+.+|.+|..++-.+...|...
T Consensus 305 RfPglpQTsLD~sKIQyNkDVG~aILESYSRvLesLAf~I~sR 347 (365)
T 2ntx_A 305 KFPGLPQSSLDISKIQFNKDVGQAVLESYSRILESLAYTVMSR 347 (365)
T ss_dssp HCTTCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCCchHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6552 1224679999988877665544443
No 5
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=9.29 E-value=91 Score=24.97 Aligned_cols=19 Identities=26% Similarity=0.650 Sum_probs=13.7
Q ss_pred CCCCCCCCCcccchhHHHHH
Q 006255 19 SSIPSGDNTVWADISPLLDA 38 (653)
Q Consensus 19 ~~~~~~~~~~~~DiT~~f~~ 38 (653)
++.|.+.+ .|.+||+.+..
T Consensus 30 PnLPpgVn-TW~qI~el~qk 48 (81)
T 2ko4_A 30 PNIPPNIN-TWQQVTALAQQ 48 (81)
T ss_dssp SSCCTTTC-BHHHHHHHHTT
T ss_pred CCCCCCcc-hHHHHHHHHHc
Confidence 34555554 99999999874
No 6
>3lbw_A M2 protein; proton channel, M2TM, HOST CEL membrane, hydrogen ION transport, ionic channel, transmembr virion, transport protein; HET: XYL; 1.65A {Influenza a virus}
Probab=9.04 E-value=97 Score=18.52 Aligned_cols=9 Identities=44% Similarity=0.579 Sum_probs=6.3
Q ss_pred HHHHHHHHH
Q 006255 104 SIIDIMDHL 112 (653)
Q Consensus 104 evi~I~D~l 112 (653)
-++||.|||
T Consensus 14 LiLwIlDrL 22 (23)
T 3lbw_A 14 LILWILDRL 22 (26)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhhc
Confidence 357888876
No 7
>2lqx_A Trypsin inhibitor BWI-2C; helical hairpin, hydrolase inhibitor; NMR {Fagopyrum esculentum}
Probab=11.58 E-value=76 Score=21.07 Aligned_cols=10 Identities=30% Similarity=0.597 Sum_probs=7.9
Q ss_pred HccCcchHHh
Q 006255 442 LCTNAAWQRR 451 (653)
Q Consensus 442 ~~~Nr~RqRr 451 (653)
-|||-||..|
T Consensus 10 ecqnvcrmkr 19 (41)
T 2lqx_A 10 ECQNVCRMKR 19 (41)
Confidence 3899999765
No 8
>2ljb_A M2 protein, BM2 protein chimera; M2 channel, transport protein; NMR {Influenza a virus} PDB: 2ljc_A*
Probab=8.36 E-value=1.3e+02 Score=19.92 Aligned_cols=11 Identities=27% Similarity=0.123 Sum_probs=7.9
Q ss_pred HHHHHHHHHHH
Q 006255 104 SIIDIMDHLLA 114 (653)
Q Consensus 104 evi~I~D~ll~ 114 (653)
-++||+|+|+-
T Consensus 21 lilWildrLff 31 (35)
T 2ljb_A 21 FIAWTIGHLNQ 31 (35)
T ss_dssp HHHHHHHTHHH
T ss_pred HHHHHhhhhHh
Confidence 45788888873
No 9
>3g27_A 82 prophage-derived uncharacterized protein YBCO; E.coli, prophage-associated, zinc-binding, structural genomi 2; 2.10A {Escherichia coli k-12}
Probab=6.47 E-value=4.4e+02 Score=21.84 Aligned_cols=24 Identities=13% Similarity=0.201 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcc
Q 006255 582 QCHMCLAEGLTMMLAALRNDLMVL 605 (653)
Q Consensus 582 ~~~~~l~~~~~~~~~~L~~~g~i~ 605 (653)
+.-..+.+|+.+...+|.+.|+|+
T Consensus 72 e~r~~~~egv~rT~~~L~~~G~i~ 95 (96)
T 3g27_A 72 YAKECALEGMARTQVIWLKEGVIK 95 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcC
Confidence 334578899999999999999995
No 10
>2juc_A PRE-mRNA-splicing factor URN1; FF, helical bundle, solution, mRNA processing, nucleus, spliceosome, unknown function; NMR {Saccharomyces cerevisiae}
Probab=6.27 E-value=1.4e+02 Score=22.49 Aligned_cols=34 Identities=9% Similarity=0.069 Sum_probs=26.1
Q ss_pred cchhHHHHHHHhc--CCC--------CCccccCCccHHHhhhhh
Q 006255 30 ADISPLLDAACKE--LGD--------GEMIHGENFNLFAAMSAL 63 (653)
Q Consensus 30 ~DiT~~f~~a~~~--L~~--------gelv~~~~F~L~eamsAl 63 (653)
.|...+|+++.++ +.| |.++.|+.|.....|++=
T Consensus 6 ~d~k~~F~~LL~e~~InPys~W~~e~~ki~~DpRY~~l~s~~~R 49 (59)
T 2juc_A 6 IDERNIFFELFDRYKLDKFSTWSLQSKKIENDPDFYKIRDDTVR 49 (59)
T ss_dssp CSSHHHHHHHHHHTTCCTTTCSHHHHHHHSSSTTGGGSSCHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCchhhhcccccCCCCeeecCChHHH
Confidence 4788888888774 433 788999999988888763
Done!