Query 006255
Match_columns 653
No_of_seqs 160 out of 227
Neff 7.4
Searched_HMMs 13730
Date Mon Mar 25 20:07:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006255.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/006255hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 g1kve.1 d.70.1.2 (A:,B:) SMK t 5.0 1.6E+02 0.011 22.4 2.1 18 106-123 38-55 (140)
2 d2dkla1 a.5.2.1 (A:8-79) Trinu 4.9 1.2E+02 0.0085 21.9 1.2 26 46-73 32-57 (72)
3 d2cqea2 g.66.1.1 (A:429-457) Z 4.3 92 0.0067 18.3 0.2 7 131-137 22-28 (29)
4 d1ufia_ a.30.4.1 (A:) Dimerisa 4.3 2.1E+02 0.015 18.0 1.9 14 333-346 2-15 (48)
5 d1unld_ a.74.1.1 (D:) CDK5 act 4.2 81 0.0059 25.7 -0.2 12 125-136 78-89 (150)
6 d1h3ob_ a.22.1.3 (B:) TAF(II)- 3.8 4.5E+02 0.033 18.7 3.8 52 396-451 2-53 (74)
7 d1ny9a_ a.181.1.1 (A:) Transcr 3.3 5.3E+02 0.039 18.8 4.1 50 81-139 15-65 (94)
8 d3buxb2 a.48.1.1 (B:48-177) N- 3.2 3.8E+02 0.028 21.3 3.1 29 442-470 93-121 (130)
9 d2doda1 a.159.2.1 (A:651-719) 3.1 7.3E+02 0.053 16.9 4.9 30 335-368 6-35 (69)
10 d1sfua_ a.4.5.19 (A:) 34L {Yab 2.7 3.4E+02 0.024 19.3 2.0 20 30-49 6-25 (70)
No 1
>g1kve.1 d.70.1.2 (A:,B:) SMK toxin {Halotolerant yeast (Pichia farinosa) [TaxId: 4920]}
Probab=5.02 E-value=1.6e+02 Score=22.45 Aligned_cols=18 Identities=33% Similarity=0.671 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 006255 106 IDIMDHLLACEATWHSGH 123 (653)
Q Consensus 106 i~I~D~ll~~e~~Wl~G~ 123 (653)
.+|+--|-.-|+.||+|.
T Consensus 38 agilailqgfevnwhngg 55 (140)
T g1kve.1 38 AGILAILQGFEVNWHNGG 55 (140)
T ss_dssp HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhcceeeeecCC
Confidence 356666778899999984
No 2
>d2dkla1 a.5.2.1 (A:8-79) Trinucleotide repeat containing 6c protein, TNRC6C {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.91 E-value=1.2e+02 Score=21.85 Aligned_cols=26 Identities=42% Similarity=0.566 Sum_probs=22.1
Q ss_pred CCccccCCccHHHhhhhhhccCCCCCcc
Q 006255 46 GEMIHGENFNLFAAMSALEIMDPKMDSG 73 (653)
Q Consensus 46 gelv~~~~F~L~eamsAlEimdpKMDsg 73 (653)
.+-++..+++|-.||+|| -|.|||..
T Consensus 32 e~~l~sN~m~L~~a~~~l--~dKk~e~d 57 (72)
T d2dkla1 32 EEALKSNNMNLDQAMSAL--LEKKVDVD 57 (72)
T ss_dssp HHHHHHTTSCHHHHHHHH--HTTSCCSS
T ss_pred HHhhhccCcchhhcccch--hhhhhccc
Confidence 356778899999999998 79999974
No 3
>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.32 E-value=92 Score=18.28 Aligned_cols=7 Identities=29% Similarity=0.833 Sum_probs=4.5
Q ss_pred hhhhccc
Q 006255 131 SCIYLLR 137 (653)
Q Consensus 131 tc~Y~~~ 137 (653)
.|.|+|+
T Consensus 22 nC~ymH~ 28 (29)
T d2cqea2 22 NCPYMHG 28 (29)
T ss_dssp TCSSBSS
T ss_pred CcccccC
Confidence 4777764
No 4
>d1ufia_ a.30.4.1 (A:) Dimerisation domain of CENP-B {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.25 E-value=2.1e+02 Score=18.03 Aligned_cols=14 Identities=29% Similarity=0.636 Sum_probs=11.1
Q ss_pred ccccCHHHHHHHHH
Q 006255 333 IKILSWKRAVEYFV 346 (653)
Q Consensus 333 i~~~s~~ea~~~~~ 346 (653)
+..+|+.||..||.
T Consensus 2 ~pvpsfgeamayfa 15 (48)
T d1ufia_ 2 MPVPSFGEAMAYFA 15 (48)
T ss_dssp CCCCCHHHHHHHHH
T ss_pred CCCccHHHHHHHHH
Confidence 34678999999886
No 5
>d1unld_ a.74.1.1 (D:) CDK5 activator 1 (NCK5a, p25) {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.19 E-value=81 Score=25.73 Aligned_cols=12 Identities=33% Similarity=0.913 Sum_probs=9.8
Q ss_pred ccchhhhhhhcc
Q 006255 125 LAQTVFSCIYLL 136 (653)
Q Consensus 125 L~qTv~tc~Y~~ 136 (653)
|--+|+||+|+-
T Consensus 78 Lqa~vLtCLYls 89 (150)
T d1unld_ 78 LQAVLLTCLYLS 89 (150)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 556899999994
No 6
>d1h3ob_ a.22.1.3 (B:) TAF(II)-20, (TAF(II)-15, hTAF12), histone fold domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.75 E-value=4.5e+02 Score=18.70 Aligned_cols=52 Identities=12% Similarity=0.203 Sum_probs=33.0
Q ss_pred ccccccchHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHccCcchHHh
Q 006255 396 KLYGRYPIFAVITKASALPEFTKNHDIQKSECFMQLGQLVINMLKILCTNAAWQRR 451 (653)
Q Consensus 396 ~ilG~~~~~~~l~~~~~~P~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~Nr~RqRr 451 (653)
.|+++..+.+++.+.= |....++ .+++++..++--|.+.+..+.+--|.-|.
T Consensus 2 ~il~K~~L~eLv~~id--p~~~ld~--~vee~ll~iADdFV~~V~~~ac~lAKhR~ 53 (74)
T d1h3ob_ 2 MVLTKKKLQDLVREVD--PNEQLDE--DVEEMLLQIADDFIESVVTAACQLARHRK 53 (74)
T ss_dssp CSSCHHHHHHHHHHHC--SSCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccHHHHHHHHHHhC--CCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4778888888876542 4433344 47778878777777766555555555544
No 7
>d1ny9a_ a.181.1.1 (A:) Transcriptional activator TipA-S {Streptomyces lividans [TaxId: 1916]}
Probab=3.27 E-value=5.3e+02 Score=18.76 Aligned_cols=50 Identities=14% Similarity=0.139 Sum_probs=34.5
Q ss_pred hhHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcC-CCccchhhhhhhccccc
Q 006255 81 LDEAIEDGAAPVPLSHDKTIDVQSIIDIMDHLLACEATWHSG-HSLAQTVFSCIYLLRLD 139 (653)
Q Consensus 81 ~~e~~~~g~~p~~~~~~~~l~~~evi~I~D~ll~~e~~Wl~G-~sL~qTv~tc~Y~~~~~ 139 (653)
+.+++..|..| +-+++-.++++....+..|... ..=...-+..+|+.+|.
T Consensus 15 la~~~~~G~~p---------~s~~vq~lv~~H~~~i~~~~~~~s~e~~~~Lg~mYv~D~r 65 (94)
T d1ny9a_ 15 FVALMDAGEPA---------DSEGAMDAAEDHRQGIARNHYDCGYEMHTCLGEMYVSDER 65 (94)
T ss_dssp HHHHHHHTCCT---------TCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHTTSTHH
T ss_pred HHHHHHcCCCC---------CCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHcCCHH
Confidence 44566677544 2368999999998888765543 33466778889998763
No 8
>d3buxb2 a.48.1.1 (B:48-177) N-terminal domain of cbl (N-cbl) {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.20 E-value=3.8e+02 Score=21.29 Aligned_cols=29 Identities=17% Similarity=0.212 Sum_probs=23.3
Q ss_pred HccCcchHHhhhhhhHhcHHHHHHHHHHH
Q 006255 442 LCTNAAWQRRKLGKILQDWRVIYVQLELA 470 (653)
Q Consensus 442 ~~~Nr~RqRr~l~~~l~~w~~LQ~q~E~~ 470 (653)
+---++|.||.|.|.=..++.+.+++.+.
T Consensus 93 mfde~S~~Rr~LtKLsLiFSHMlaelkal 121 (130)
T d3buxb2 93 MYEENSQPRRNLTKLSLIFSHMLAELKGI 121 (130)
T ss_dssp GGSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccHHHHHhHHHHHHHHHHHHHHHHh
Confidence 34567899999999999999987776653
No 9
>d2doda1 a.159.2.1 (A:651-719) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.10 E-value=7.3e+02 Score=16.89 Aligned_cols=30 Identities=20% Similarity=0.217 Sum_probs=21.6
Q ss_pred ccCHHHHHHHHHHHHHHHHHhcccCCCCCHHHHH
Q 006255 335 ILSWKRAVEYFVKLLHDLDVICSYSLDPSLEGVL 368 (653)
Q Consensus 335 ~~s~~ea~~~~~~l~~dl~~i~~~~~~~~~~~~l 368 (653)
.+..+++.+.|..|+.+. .++...++...+
T Consensus 6 ~~~~Ee~~~~Fk~LL~e~----~i~~~~~W~~~~ 35 (69)
T d2doda1 6 IVPLEARMKQFKDMLLER----GVSAFSTWEKEL 35 (69)
T ss_dssp SCCHHHHHHHHHHHHHHT----TCCSSSCHHHHH
T ss_pred hccHHHHHHHHHHHHHHc----CCCCCCCHHHHH
Confidence 457899999999999984 344444666543
No 10
>d1sfua_ a.4.5.19 (A:) 34L {Yaba-like disease virus, YLDV [TaxId: 132475]}
Probab=2.74 E-value=3.4e+02 Score=19.31 Aligned_cols=20 Identities=20% Similarity=0.292 Sum_probs=12.8
Q ss_pred cchhHHHHHHHhcCCCCCcc
Q 006255 30 ADISPLLDAACKELGDGEMI 49 (653)
Q Consensus 30 ~DiT~~f~~a~~~L~~gelv 49 (653)
+||.++.++....|.+|+-+
T Consensus 6 ~~i~~lvk~~l~~L~~~~~~ 25 (70)
T d1sfua_ 6 AEIFSLVKKEVLSLNTNDYT 25 (70)
T ss_dssp HHHHHHHHHHHHTSCTTCEE
T ss_pred HHHHHHHHHHHHhcCCCCCc
Confidence 46666666666666666543
Done!