BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006256
(653 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VM6|A Chain A, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakarensis Kod1 In Complex With
Alpha-D-Ribose-1,5- Bisphosphate
pdb|3VM6|B Chain B, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakarensis Kod1 In Complex With
Alpha-D-Ribose-1,5- Bisphosphate
pdb|3VM6|C Chain C, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakarensis Kod1 In Complex With
Alpha-D-Ribose-1,5- Bisphosphate
Length = 338
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 132/261 (50%), Gaps = 12/261 (4%)
Query: 387 FLIDCRPLSVSMGNAIRFLKSQIAKIPISLSE--SEAKATLHSDIERFINEKIILADRVI 444
L + RP +VS+ NA+R++ + KI S + + + + + FI+ +R I
Sbjct: 74 ILFETRPTAVSLPNALRYVMHR-GKIAYSSGADLEQLRFVIINAAKEFIHNSEKALER-I 131
Query: 445 VKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEXXXXXXXXXXX 504
+ +I DGDV++T+ S A +++ A E GK +V++ ++RPK +
Sbjct: 132 GEFGAKRIEDGDVIMTHSHSKAAISVMKTAWEQGKDIKVIVTETRPKWQGKITAKELASY 191
Query: 505 XXSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCE 564
Y +A + + +V +GA S+ NG V +++GTA +A+ A + ++ E
Sbjct: 192 GIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTALIALTAKEHRVWTMIAAE 251
Query: 565 AYKFHERVQLDSICSNELGDPDSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDYV 624
YKFH L + E+ DP + +P E L W K N+++ N +D TP +YV
Sbjct: 252 TYKFHPETMLGQLVEIEMRDPTEV--IPEDE----LKTWPK--NIEVWNPAFDVTPPEYV 303
Query: 625 SLIITDYGMIPPTSVPVIVRE 645
+IIT+ G+IPP + I+RE
Sbjct: 304 DVIITERGIIPPYAAIDILRE 324
>pdb|3A11|A Chain A, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|B Chain B, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|C Chain C, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|D Chain D, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|E Chain E, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|F Chain F, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
Length = 338
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 132/261 (50%), Gaps = 12/261 (4%)
Query: 387 FLIDCRPLSVSMGNAIRFLKSQIAKIPISLSE--SEAKATLHSDIERFINEKIILADRVI 444
L + RP +VS+ NA+R++ + KI S + + + + + FI+ +R I
Sbjct: 74 ILFETRPTAVSLPNALRYVMHR-GKIAYSSGADLEQLRFVIINAAKEFIHNSEKALER-I 131
Query: 445 VKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEXXXXXXXXXXX 504
+ +I DGDV++T+ S A +++ A E GK +V++ ++RPK +
Sbjct: 132 GEFGAKRIEDGDVIMTHCHSKAAISVMKTAWEQGKDIKVIVTETRPKWQGKITAKELASY 191
Query: 505 XXSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCE 564
Y +A + + +V +GA S+ NG V +++GTA +A+ A + ++ E
Sbjct: 192 GIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTALIALTAKEHRVWTMIAAE 251
Query: 565 AYKFHERVQLDSICSNELGDPDSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDYV 624
YKFH L + E+ DP + +P E L W K N+++ N +D TP +YV
Sbjct: 252 TYKFHPETMLGQLVEIEMRDPTEV--IPEDE----LKTWPK--NIEVWNPAFDVTPPEYV 303
Query: 625 SLIITDYGMIPPTSVPVIVRE 645
+IIT+ G+IPP + I+RE
Sbjct: 304 DVIITERGIIPPYAAIDILRE 324
>pdb|3A9C|C Chain C, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
pdb|3A9C|E Chain E, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
Length = 322
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 76/262 (29%), Positives = 132/262 (50%), Gaps = 13/262 (4%)
Query: 387 FLIDCRPLSVSMGNAIRFLKSQIAKIPISLSE--SEAKATLHSDIERFINEKIILADRVI 444
L + RP +VS+ NA+R++ + KI S + + + + + FI+ +R I
Sbjct: 57 ILFETRPTAVSLPNALRYVMHR-GKIAYSSGADLEQLRFVIINAAKEFIHNSEKALER-I 114
Query: 445 VKHAVTKIRDGDVLLTYG-SSSAVEMILQHAHELGKQFRVVIVDSRPKHEXXXXXXXXXX 503
+ +I DGDV++T+ S A +++ A E GK +V++ ++RPK +
Sbjct: 115 GEFGAKRIEDGDVIMTHXCHSKAAISVMKTAWEQGKDIKVIVTETRPKWQGKITAKELAS 174
Query: 504 XXXSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563
Y +A + + +V +GA S+ NG V +++GTA +A+ A + ++
Sbjct: 175 YGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTALIALTAKEHRVWTMIAA 234
Query: 564 EAYKFHERVQLDSICSNELGDPDSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDY 623
E YKFH L + E+ DP + +P E L W K N+++ N +D TP +Y
Sbjct: 235 ETYKFHPETMLGQLVEIEMRDPTEV--IPEDE----LKTWPK--NIEVWNPAFDVTPPEY 286
Query: 624 VSLIITDYGMIPPTSVPVIVRE 645
V +IIT+ G+IPP + I+RE
Sbjct: 287 VDVIITERGIIPPYAAIDILRE 308
>pdb|3A9C|A Chain A, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
Length = 321
Score = 116 bits (291), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 76/262 (29%), Positives = 132/262 (50%), Gaps = 13/262 (4%)
Query: 387 FLIDCRPLSVSMGNAIRFLKSQIAKIPISLSE--SEAKATLHSDIERFINEKIILADRVI 444
L + RP +VS+ NA+R++ + KI S + + + + + FI+ +R I
Sbjct: 56 ILFETRPTAVSLPNALRYVMHR-GKIAYSSGADLEQLRFVIINAAKEFIHNSEKALER-I 113
Query: 445 VKHAVTKIRDGDVLLTYG-SSSAVEMILQHAHELGKQFRVVIVDSRPKHEXXXXXXXXXX 503
+ +I DGDV++T+ S A +++ A E GK +V++ ++RPK +
Sbjct: 114 GEFGAKRIEDGDVIMTHXCHSKAAISVMKTAWEQGKDIKVIVTETRPKWQGKITAKELAS 173
Query: 504 XXXSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563
Y +A + + +V +GA S+ NG V +++GTA +A+ A + ++
Sbjct: 174 YGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTALIALTAKEHRVWTMIAA 233
Query: 564 EAYKFHERVQLDSICSNELGDPDSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDY 623
E YKFH L + E+ DP + +P E L W K N+++ N +D TP +Y
Sbjct: 234 ETYKFHPETMLGQLVEIEMRDPTEV--IPEDE----LKTWPK--NIEVWNPAFDVTPPEY 285
Query: 624 VSLIITDYGMIPPTSVPVIVRE 645
V +IIT+ G+IPP + I+RE
Sbjct: 286 VDVIITERGIIPPYAAIDILRE 307
>pdb|3A9C|D Chain D, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
pdb|3A9C|F Chain F, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
Length = 323
Score = 116 bits (291), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 76/262 (29%), Positives = 132/262 (50%), Gaps = 13/262 (4%)
Query: 387 FLIDCRPLSVSMGNAIRFLKSQIAKIPISLSE--SEAKATLHSDIERFINEKIILADRVI 444
L + RP +VS+ NA+R++ + KI S + + + + + FI+ +R I
Sbjct: 58 ILFETRPTAVSLPNALRYVMHR-GKIAYSSGADLEQLRFVIINAAKEFIHNSEKALER-I 115
Query: 445 VKHAVTKIRDGDVLLTYG-SSSAVEMILQHAHELGKQFRVVIVDSRPKHEXXXXXXXXXX 503
+ +I DGDV++T+ S A +++ A E GK +V++ ++RPK +
Sbjct: 116 GEFGAKRIEDGDVIMTHXCHSKAAISVMKTAWEQGKDIKVIVTETRPKWQGKITAKELAS 175
Query: 504 XXXSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563
Y +A + + +V +GA S+ NG V +++GTA +A+ A + ++
Sbjct: 176 YGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTALIALTAKEHRVWTMIAA 235
Query: 564 EAYKFHERVQLDSICSNELGDPDSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDY 623
E YKFH L + E+ DP + +P E L W K N+++ N +D TP +Y
Sbjct: 236 ETYKFHPETMLGQLVEIEMRDPTEV--IPEDE----LKTWPK--NIEVWNPAFDVTPPEY 287
Query: 624 VSLIITDYGMIPPTSVPVIVRE 645
V +IIT+ G+IPP + I+RE
Sbjct: 288 VDVIITERGIIPPYAAIDILRE 309
>pdb|3A9C|B Chain B, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
Length = 326
Score = 112 bits (279), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 77/262 (29%), Positives = 132/262 (50%), Gaps = 16/262 (6%)
Query: 387 FLIDCRPLSVSMGNAIRFLKSQIAKIPISLSE--SEAKATLHSDIERFINEKIILADRVI 444
L + RP +VS+ NA+R++ + KI S + + + + + FI+ +R I
Sbjct: 64 ILFETRPTAVSLPNALRYVMHR-GKIAYSSGADLEQLRFVIINAAKEFIHNSEKALER-I 121
Query: 445 VKHAVTKIRDGDVLLTYG-SSSAVEMILQHAHELGKQFRVVIVDSRPKHEXXXXXXXXXX 503
+ +I DGDV++T+ S A +++ A E GK +V++ ++RPK +
Sbjct: 122 GEFGAKRIEDGDVIMTHXCHSKAAISVMKTAWEQGKDIKVIVTETRPKWQGKITAKELAS 181
Query: 504 XXXSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563
Y +A + + +V +GA S+ NG V +++GTA +A+ A + ++
Sbjct: 182 YGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTALIALTAKEHRVWTMIAA 241
Query: 564 EAYKFHERVQLDSICSNELGDPDSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDY 623
E YKFH L I E+ DP + +P E L W K N+++ N +D TP +Y
Sbjct: 242 ETYKFHPETMLVEI---EMRDPTEV--IPEDE----LKTWPK--NIEVWNPAFDVTPPEY 290
Query: 624 VSLIITDYGMIPPTSVPVIVRE 645
V +IIT+ G+IPP + I+RE
Sbjct: 291 VDVIITERGIIPPYAAIDILRE 312
>pdb|1VB5|A Chain A, Crystal Structure Analysis Of The Pyrococcus Horikoshii
Ot3 Translation Initiation Factor Eif-2b
pdb|1VB5|B Chain B, Crystal Structure Analysis Of The Pyrococcus Horikoshii
Ot3 Translation Initiation Factor Eif-2b
Length = 276
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 85/189 (44%), Gaps = 21/189 (11%)
Query: 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEXXXXXXXXXXXXXSCTYT 511
I DGDV++T+ SS V I++ A E K+F+V++ +S P +E
Sbjct: 107 IDDGDVIITHSFSSTVLEIIRTAKERKKRFKVILTESSPDYEGLHLARELEFSGIEFEVI 166
Query: 512 HINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHER 571
+ E + +GA + +G V ++ GT +A+ + IP V E YKFH
Sbjct: 167 TDAQMGLFCREASIAIVGADMITKDGYVVNKAGTYLLALACHENAIPFYVAAETYKFHPT 226
Query: 572 VQLDSICSNELGDPDSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDYVSLIITDY 631
++ + L + D I N+++ N+++D TP YV IIT+
Sbjct: 227 LKSGDVM---LMERDLIRG-----------------NVRIRNVLFDVTPWKYVRGIITEL 266
Query: 632 GM-IPPTSV 639
G+ IPP +
Sbjct: 267 GIVIPPRDI 275
>pdb|1T5O|A Chain A, Crystal Structure Of The Translation Initiation Factor
Eif-2b, Subunit Delta, From A. Fulgidus
pdb|1T5O|B Chain B, Crystal Structure Of The Translation Initiation Factor
Eif-2b, Subunit Delta, From A. Fulgidus
pdb|1T5O|C Chain C, Crystal Structure Of The Translation Initiation Factor
Eif-2b, Subunit Delta, From A. Fulgidus
pdb|1T5O|D Chain D, Crystal Structure Of The Translation Initiation Factor
Eif-2b, Subunit Delta, From A. Fulgidus
Length = 351
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/284 (24%), Positives = 124/284 (43%), Gaps = 38/284 (13%)
Query: 376 DLTAKISSYVSFLIDCRPLSVSMGNAIR-----FLKSQIAKIPISLSESEAKATLHSDIE 430
+L + FL RP +V++ I LK + + L+ EA+ D+E
Sbjct: 72 ELKEHLKKAADFLASTRPTAVNLFVGIERALNAALKGESVEEVKELALREAEKLAEEDVE 131
Query: 431 RFINEKIILADRVIVKHAVTKIRDGDVLLTY---GSSSAVEM-----ILQHAHELGKQFR 482
R +R + ++ + DGDV+LTY G + V+ +++ A E GK+ R
Sbjct: 132 R---------NRKMGEYGAELLEDGDVVLTYCNAGRLATVDWGTALGVVRSAVEQGKEIR 182
Query: 483 VVIVDSRPKHEXXXXXXXXXXXXXSCTYTHINAISYIIHE---VTRVFLGASSVLSNGTV 539
V+ ++RP ++ +++ I+ + V +V +GA ++ + V
Sbjct: 183 VIACETRPLNQGSRLTCWELMEDGIDVTLITDSMVGIVMQKGMVDKVIVGADRIVRDA-V 241
Query: 540 CSRVGTACVAMVAYGFHIPVLVCCEAYKF-HERVQLDSICSNELGDPDSISKVPGREDIN 598
+++GT V++VA +IP V F ER D + P G+ I
Sbjct: 242 FNKIGTYTVSVVAKHHNIPFYVAAPKATFDWERTAKDVVIEER---PREELIFCGKRQIA 298
Query: 599 HLDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMI-PPTSVPV 641
L N+++ N +D TP + V+ +IT+YG+I PP V V
Sbjct: 299 PL-------NVKVYNPAFDPTPLENVTALITEYGVIYPPYEVNV 335
>pdb|3ECS|A Chain A, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|B Chain B, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|C Chain C, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|D Chain D, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|E Chain E, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|F Chain F, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|G Chain G, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|H Chain H, Crystal Structure Of Human Eif2b Alpha
Length = 315
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 85/195 (43%), Gaps = 20/195 (10%)
Query: 450 TKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEXXXXXXXXXXXXXSCT 509
T I+DG +LT+ S V +L+ A K+F V + +S+P T
Sbjct: 117 TFIKDGATILTHAYSRVVLRVLEAAVAAKKRFSVYVTESQPDLSGKKXAKALCHLNVPVT 176
Query: 510 YTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFH 569
A+ YI + V +GA V+ NG + +++GT A+ A + P V E++KF
Sbjct: 177 VVLDAAVGYIXEKADLVIVGAEGVVENGGIINKIGTNQXAVCAKAQNKPFYVVAESFKF- 235
Query: 570 ERVQLDSICSNELGD-----PDSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDYV 624
V+L + ++ D D++ +D+ W D T +
Sbjct: 236 --VRLFPLNQQDVPDKFKYKADTLKVAQTGQDLKEEHPW------------VDYTAPSLI 281
Query: 625 SLIITDYGMIPPTSV 639
+L+ TD G++ P++V
Sbjct: 282 TLLFTDLGVLTPSAV 296
>pdb|2YRF|A Chain A, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase From Bacillus Subtilis Complexed With Sulfate
Ion
pdb|2YRF|B Chain B, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase From Bacillus Subtilis Complexed With Sulfate
Ion
pdb|2YVK|A Chain A, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase Product Complex From Bacillus Subtilis
pdb|2YVK|B Chain B, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase Product Complex From Bacillus Subtilis
pdb|2YVK|C Chain C, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase Product Complex From Bacillus Subtilis
pdb|2YVK|D Chain D, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase Product Complex From Bacillus Subtilis
Length = 374
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 114/263 (43%), Gaps = 31/263 (11%)
Query: 387 FLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATL-HSDIERFINEKIILADRVIV 445
+L RP ++++ A+ L + ++S +EAK L H I+ + ++ R+I
Sbjct: 110 YLNSSRPTAINLSWALERLSHSVEN---AISVNEAKTNLVHEAIQIQVEDEETC--RLIG 164
Query: 446 KHAVTKIRDGDVLLT-----------YGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEX 494
++A+ + GD ++T YG++ A L +LG + ++RP +
Sbjct: 165 QNALQLFKKGDRIMTICNAGSIATSRYGTALA-PFYLAKQKDLG--LHIYACETRPVLQG 221
Query: 495 XXXXXXXXXXX-XSCTYTHINAISYIIHE--VTRVFLGASSVLSNGTVCSRVGTACVAMV 551
T + ++ + E ++ V +GA + NG +++GT +A++
Sbjct: 222 SRLTAWELMQGGIDVTLITDSMAAHTMKEKQISAVIVGADRIAKNGDTANKIGTYGLAIL 281
Query: 552 AYGFHIPVLVCCEAYKFHERVQLDSICSNELGDPDSISKVPGREDINHLDGWDKSENLQL 611
A F IP V F +V+ + E DP+ + ++ G N+ +
Sbjct: 282 ANAFDIPFFVAAPLSTFDTKVKCGADIPIEERDPEEVRQISGVR--------TAPSNVPV 333
Query: 612 LNLIYDATPSDYVSLIITDYGMI 634
N +D TP D +S IIT+ G++
Sbjct: 334 FNPAFDITPHDLISGIITEKGIM 356
>pdb|1T9K|A Chain A, X-ray Crystal Structure Of Aif-2b Alpha Subunit-related
Translation Initiation Factor [thermotoga Maritima]
pdb|1T9K|B Chain B, X-ray Crystal Structure Of Aif-2b Alpha Subunit-related
Translation Initiation Factor [thermotoga Maritima]
pdb|1T9K|C Chain C, X-ray Crystal Structure Of Aif-2b Alpha Subunit-related
Translation Initiation Factor [thermotoga Maritima]
pdb|1T9K|D Chain D, X-ray Crystal Structure Of Aif-2b Alpha Subunit-related
Translation Initiation Factor [thermotoga Maritima]
Length = 347
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/307 (21%), Positives = 123/307 (40%), Gaps = 40/307 (13%)
Query: 346 GGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIR-- 403
G A +A + +RDY T LT L RP +V++ A+
Sbjct: 51 GAPAIGVAAAFGYVLGLRDYKTG-------SLTDWXKQVKETLARTRPTAVNLFWALNRX 103
Query: 404 ---FLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLT 460
F ++ + + E+EA + DIE ++ I K+ I+DG +LT
Sbjct: 104 EKVFFENADRENLFEILENEALKXAYEDIE---------VNKAIGKNGAQLIKDGSTILT 154
Query: 461 YGSSSAVEMI--------LQHAHELGKQFRVVIVDSRPKHEXXXXXXXXXXXXXSCTYTH 512
+ ++ A+ + ++ A E GK+ RV ++RP + Y
Sbjct: 155 HCNAGALATVDYGTALGVIRAAVESGKRIRVFADETRPYLQGARLTAWELXKDGIEVYVI 214
Query: 513 I-NAISYIIHE--VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFH 569
N ++ + V +GA + NG +++GT +A++A +IP V
Sbjct: 215 TDNXAGWLXKRGLIDAVVVGADRIALNGDTANKIGTYSLAVLAKRNNIPFYVAAPVSTID 274
Query: 570 ERVQLDSICSNELGDPDSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDYVSLIIT 629
++ E P+ ++ G N + E +++LN +D T + ++ IIT
Sbjct: 275 PTIRSGEEIPIEERRPEEVTHCGG----NRI----APEGVKVLNPAFDVTENTLITAIIT 326
Query: 630 DYGMIPP 636
+ G+I P
Sbjct: 327 EKGVIRP 333
>pdb|2A0U|A Chain A, Crystal Structure Of The Eukaryotic Initiation Factor 2b
From Leishmania Major At 2.1 A Resolution
pdb|2A0U|B Chain B, Crystal Structure Of The Eukaryotic Initiation Factor 2b
From Leishmania Major At 2.1 A Resolution
Length = 383
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 59/285 (20%), Positives = 117/285 (41%), Gaps = 27/285 (9%)
Query: 375 RDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKI-PISLSESEAKATLHSDIERFI 433
R++ + + F+ RP +V++ N +R LK+Q+ K+ P + A+A + +
Sbjct: 91 REVQTFLLTSCDFVXTSRPTAVNLFNCLRDLKAQVDKLDPTKAAAEVAQAFVELAEAVYT 150
Query: 434 NEKIILADRVIVKHAVTKI--------RDGDVLLTYGSSSAVEM--------ILQHAHEL 477
N+ + + I +H I RD +LT ++ A+ +++
Sbjct: 151 ND--VAFNEGIXRHGAAHILAAAKAEGRDKVSILTICNTGALATSRYGTALGVVRQLFYD 208
Query: 478 GKQFRVVIVDSRPKHEXXXXXXXXXXXX-XSCTYTHINAISYII--HEVTRVFLGASSVL 534
GK RV ++RP ++ CT A S + ++ V +GA +
Sbjct: 209 GKLERVYACETRPWNQGARLTVYECVQEDIPCTLICDGAASSLXLNRKIDAVVVGADRIC 268
Query: 535 SNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGDPDSISKVPGR 594
NG +++GT +A+ A + + V + + E +P I+
Sbjct: 269 QNGDTANKIGTYNLAVSAKFHGVKLYVAAPTTTLDVKTASGNHVEIEEREPTEITTNLVT 328
Query: 595 EDINHLDGWDKSENLQLLNLIYDATPSDYVS-LIITDYGMIPPTS 638
+ DG +L + N ++D TPS+ ++ IIT+ G+ P +
Sbjct: 329 KQRVVADG----PHLSIWNPVFDITPSELITGGIITEKGVQAPAA 369
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,926,052
Number of Sequences: 62578
Number of extensions: 565670
Number of successful extensions: 1100
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1062
Number of HSP's gapped (non-prelim): 14
length of query: 653
length of database: 14,973,337
effective HSP length: 105
effective length of query: 548
effective length of database: 8,402,647
effective search space: 4604650556
effective search space used: 4604650556
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)