Query 006256
Match_columns 653
No_of_seqs 275 out of 1464
Neff 5.1
Searched_HMMs 46136
Date Thu Mar 28 20:38:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006256.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006256hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1467 Translation initiation 100.0 2E-109 3E-114 885.9 33.0 536 48-650 15-555 (556)
2 PRK08535 translation initiatio 100.0 1.3E-69 2.9E-74 570.5 32.7 304 327-648 2-305 (310)
3 PRK05720 mtnA methylthioribose 100.0 1.7E-69 3.7E-74 575.1 29.7 316 297-648 10-342 (344)
4 TIGR00512 salvage_mtnA S-methy 100.0 1.9E-69 4.1E-74 571.6 28.8 303 298-636 8-331 (331)
5 TIGR00511 ribulose_e2b2 ribose 100.0 8.7E-68 1.9E-72 554.6 32.5 290 341-648 11-300 (301)
6 COG0182 Predicted translation 100.0 1.1E-67 2.4E-72 545.6 25.9 308 299-640 13-338 (346)
7 PRK06036 translation initiatio 100.0 2.8E-67 6E-72 556.6 27.9 306 298-639 11-333 (339)
8 PRK05772 translation initiatio 100.0 7.7E-67 1.7E-71 556.3 31.4 314 297-642 23-357 (363)
9 COG1184 GCD2 Translation initi 100.0 6.8E-66 1.5E-70 534.5 31.6 299 328-647 2-300 (301)
10 PRK08334 translation initiatio 100.0 8E-66 1.7E-70 546.4 30.9 316 297-647 21-353 (356)
11 PRK06371 translation initiatio 100.0 4.6E-66 9.9E-71 544.3 27.3 292 297-642 19-327 (329)
12 TIGR00524 eIF-2B_rel eIF-2B al 100.0 1.5E-65 3.2E-70 537.9 29.5 292 315-636 1-303 (303)
13 PF01008 IF-2B: Initiation fac 100.0 5.7E-65 1.2E-69 525.7 24.9 281 343-636 1-282 (282)
14 PRK08335 translation initiatio 100.0 1.4E-61 3E-66 500.5 30.5 232 375-638 42-273 (275)
15 KOG1468 Predicted translation 100.0 3.6E-59 7.7E-64 471.7 19.6 311 297-638 10-344 (354)
16 KOG1465 Translation initiation 100.0 5.1E-54 1.1E-58 439.1 28.6 306 331-650 10-349 (353)
17 KOG1466 Translation initiation 100.0 3.2E-51 6.9E-56 411.7 24.8 281 349-646 28-311 (313)
18 PRK06372 translation initiatio 100.0 4.2E-50 9.1E-55 410.4 23.1 247 339-640 6-252 (253)
19 PRK00702 ribose-5-phosphate is 97.6 0.00086 1.9E-08 68.6 12.9 118 440-572 6-128 (220)
20 TIGR00021 rpiA ribose 5-phosph 97.6 0.00088 1.9E-08 68.5 12.3 115 442-572 3-124 (218)
21 cd01398 RPI_A RPI_A: Ribose 5- 97.4 0.001 2.2E-08 67.6 11.0 117 442-572 3-124 (213)
22 PRK10434 srlR DNA-bindng trans 97.3 0.0038 8.3E-08 65.0 14.1 123 440-571 77-214 (256)
23 PF00455 DeoRC: DeoR C termina 97.3 0.0034 7.5E-08 60.9 12.8 123 440-571 5-142 (161)
24 PRK13509 transcriptional repre 97.3 0.003 6.5E-08 65.5 12.6 121 440-571 79-213 (251)
25 PRK09802 DNA-binding transcrip 97.2 0.0075 1.6E-07 63.3 14.2 121 441-570 93-228 (269)
26 PRK10906 DNA-binding transcrip 97.0 0.012 2.6E-07 61.2 14.1 122 440-570 77-213 (252)
27 PRK10411 DNA-binding transcrip 96.7 0.031 6.8E-07 57.7 14.0 121 440-570 79-214 (240)
28 COG1349 GlpR Transcriptional r 95.8 0.14 2.9E-06 53.5 13.1 123 440-571 77-214 (253)
29 PRK10681 DNA-binding transcrip 95.6 0.13 2.8E-06 53.5 11.7 121 441-570 79-214 (252)
30 PLN02384 ribose-5-phosphate is 95.1 0.35 7.5E-06 51.1 12.9 116 443-571 38-158 (264)
31 PRK13978 ribose-5-phosphate is 94.0 0.91 2E-05 47.1 12.8 117 442-571 9-129 (228)
32 KOG0259 Tyrosine aminotransfer 91.2 1.3 2.7E-05 49.2 9.8 116 439-561 107-237 (447)
33 COG0120 RpiA Ribose 5-phosphat 90.4 3.6 7.8E-05 42.7 11.9 118 442-571 8-127 (227)
34 COG2057 AtoA Acyl CoA:acetate/ 87.5 1.3 2.7E-05 45.9 6.2 101 440-543 7-120 (225)
35 COG0426 FpaA Uncharacterized f 85.6 13 0.00028 41.6 13.2 141 424-568 183-341 (388)
36 PF02254 TrkA_N: TrkA-N domain 85.2 3.6 7.7E-05 36.7 7.3 92 458-566 1-99 (116)
37 PRK04311 selenocysteine syntha 81.0 26 0.00057 40.0 13.7 114 446-563 134-257 (464)
38 cd00293 USP_Like Usp: Universa 80.9 24 0.00051 30.5 10.7 93 466-562 15-130 (130)
39 TIGR00474 selA seryl-tRNA(sec) 80.7 69 0.0015 36.5 16.9 114 446-563 129-252 (454)
40 PF01073 3Beta_HSD: 3-beta hyd 78.6 4.5 9.7E-05 42.6 6.3 106 460-568 3-119 (280)
41 TIGR01437 selA_rel uncharacter 78.1 22 0.00047 38.8 11.5 137 418-561 26-184 (363)
42 KOG3075 Ribose 5-phosphate iso 77.6 14 0.00031 39.0 9.3 117 443-570 30-150 (261)
43 PRK05973 replicative DNA helic 75.6 53 0.0011 34.4 13.0 113 452-568 61-195 (237)
44 cd01989 STK_N The N-terminal d 75.6 29 0.00064 31.8 10.2 60 501-563 74-144 (146)
45 cd05005 SIS_PHI Hexulose-6-pho 74.2 40 0.00086 32.8 11.1 84 445-528 23-125 (179)
46 PRK11557 putative DNA-binding 73.5 51 0.0011 34.2 12.4 43 488-530 185-227 (278)
47 PRK05414 urocanate hydratase; 72.9 17 0.00036 42.0 9.0 114 373-490 215-370 (556)
48 TIGR03127 RuMP_HxlB 6-phospho 72.9 47 0.001 32.2 11.3 38 493-530 87-124 (179)
49 TIGR00273 iron-sulfur cluster- 72.0 42 0.00092 38.1 12.1 50 522-572 181-231 (432)
50 TIGR01228 hutU urocanate hydra 70.2 19 0.00042 41.4 8.7 88 373-464 206-317 (545)
51 PRK02947 hypothetical protein; 69.4 1.5E+02 0.0032 30.9 14.9 37 492-528 120-167 (246)
52 PRK07582 cystathionine gamma-l 69.4 44 0.00094 36.5 11.2 95 455-561 66-167 (366)
53 PRK10886 DnaA initiator-associ 69.2 1.2E+02 0.0027 30.7 13.6 37 521-564 108-144 (196)
54 PRK01438 murD UDP-N-acetylmura 69.2 21 0.00046 40.1 9.0 72 454-530 15-86 (480)
55 PRK08134 O-acetylhomoserine am 68.6 50 0.0011 37.3 11.7 99 456-562 81-185 (433)
56 PRK07810 O-succinylhomoserine 68.3 72 0.0016 35.5 12.8 98 456-561 87-190 (403)
57 PRK14106 murD UDP-N-acetylmura 68.1 36 0.00079 37.8 10.5 94 454-561 4-97 (450)
58 PLN02651 cysteine desulfurase 67.9 1.5E+02 0.0033 31.8 14.9 102 454-561 60-173 (364)
59 TIGR03402 FeS_nifS cysteine de 67.8 1.6E+02 0.0034 31.7 15.0 102 454-561 59-171 (379)
60 PRK11337 DNA-binding transcrip 67.4 87 0.0019 32.8 12.6 49 481-529 190-238 (292)
61 PRK12454 carbamate kinase-like 67.3 55 0.0012 35.7 11.3 50 514-563 176-233 (313)
62 cd00532 MGS-like MGS-like doma 66.9 60 0.0013 29.5 9.9 84 469-567 16-110 (112)
63 PF01175 Urocanase: Urocanase; 66.4 24 0.00052 40.7 8.5 115 373-491 205-361 (546)
64 PRK08133 O-succinylhomoserine 65.9 79 0.0017 34.9 12.5 98 456-561 78-181 (390)
65 COG1737 RpiR Transcriptional r 65.7 1.6E+02 0.0036 31.0 14.3 44 487-530 186-229 (281)
66 PRK09496 trkA potassium transp 65.0 68 0.0015 35.5 11.8 61 450-512 200-261 (453)
67 TIGR01140 L_thr_O3P_dcar L-thr 64.2 43 0.00094 35.6 9.8 100 453-561 63-163 (330)
68 TIGR03235 DNA_S_dndA cysteine 64.1 1E+02 0.0022 32.8 12.6 102 455-561 60-173 (353)
69 PF03853 YjeF_N: YjeF-related 64.1 1E+02 0.0022 30.1 11.5 120 437-560 5-135 (169)
70 cd01424 MGS_CPS_II Methylglyox 64.0 73 0.0016 28.6 9.8 95 455-565 1-104 (110)
71 TIGR01470 cysG_Nterm siroheme 63.6 47 0.001 33.6 9.4 94 454-564 8-102 (205)
72 PRK00025 lpxB lipid-A-disaccha 63.1 98 0.0021 33.1 12.3 71 478-565 218-289 (380)
73 PF01488 Shikimate_DH: Shikima 62.9 43 0.00093 31.4 8.4 72 454-529 11-82 (135)
74 PRK05839 hypothetical protein; 62.8 63 0.0014 35.1 10.8 105 452-561 81-193 (374)
75 PF00535 Glycos_transf_2: Glyc 62.4 59 0.0013 29.0 9.1 81 457-537 3-94 (169)
76 cd06454 KBL_like KBL_like; thi 62.0 79 0.0017 33.2 11.1 103 451-562 58-168 (349)
77 cd04235 AAK_CK AAK_CK: Carbama 62.0 1.1E+02 0.0023 33.4 12.2 50 514-563 172-229 (308)
78 PRK08248 O-acetylhomoserine am 61.8 69 0.0015 36.1 11.2 99 456-562 81-185 (431)
79 PRK15118 universal stress glob 61.7 69 0.0015 29.4 9.5 36 522-563 103-138 (144)
80 PRK05613 O-acetylhomoserine am 61.3 69 0.0015 36.3 11.1 101 456-563 86-192 (437)
81 TIGR02006 IscS cysteine desulf 61.1 1.4E+02 0.0029 32.8 13.1 103 454-561 64-177 (402)
82 cd06451 AGAT_like Alanine-glyo 60.9 1.2E+02 0.0026 32.1 12.4 100 455-562 50-160 (356)
83 cd00614 CGS_like CGS_like: Cys 60.3 75 0.0016 34.6 10.9 97 456-561 57-160 (369)
84 cd01987 USP_OKCHK USP domain i 59.4 1.3E+02 0.0028 26.7 10.6 94 466-562 15-123 (124)
85 PTZ00357 methyltransferase; Pr 59.2 81 0.0018 38.2 11.2 63 457-520 703-777 (1072)
86 PRK09932 glycerate kinase II; 59.2 12 0.00025 41.9 4.4 62 493-568 267-328 (381)
87 PRK08574 cystathionine gamma-s 58.6 85 0.0018 34.7 11.1 97 456-561 70-172 (385)
88 TIGR03576 pyridox_MJ0158 pyrid 58.5 2.7E+02 0.0059 30.3 14.8 132 420-561 37-173 (346)
89 PTZ00433 tyrosine aminotransfe 58.4 76 0.0016 34.9 10.7 103 452-561 102-215 (412)
90 PRK12475 thiamine/molybdopteri 58.2 86 0.0019 34.3 10.9 110 443-563 13-148 (338)
91 TIGR01325 O_suc_HS_sulf O-succ 58.1 1.3E+02 0.0029 32.9 12.4 97 456-561 71-174 (380)
92 TIGR01326 OAH_OAS_sulfhy OAH/O 57.3 1.1E+02 0.0023 34.3 11.6 98 456-562 74-178 (418)
93 TIGR01329 cysta_beta_ly_E cyst 57.1 1.1E+02 0.0023 33.7 11.5 99 456-563 64-168 (378)
94 TIGR03539 DapC_actino succinyl 56.8 56 0.0012 35.1 9.1 94 452-561 78-180 (357)
95 PRK13520 L-tyrosine decarboxyl 56.5 1.5E+02 0.0032 31.5 12.2 102 454-562 76-187 (371)
96 PRK05678 succinyl-CoA syntheta 56.4 70 0.0015 34.5 9.6 103 456-560 67-173 (291)
97 COG0855 Ppk Polyphosphate kina 56.3 29 0.00063 41.2 7.1 50 462-512 382-433 (696)
98 COG4635 HemG Flavodoxin [Energ 55.9 11 0.00023 37.6 3.1 66 496-563 20-86 (175)
99 PRK01710 murD UDP-N-acetylmura 55.6 76 0.0016 35.7 10.2 92 455-560 14-105 (458)
100 PLN02409 serine--glyoxylate am 55.3 1.1E+02 0.0024 33.7 11.2 98 456-561 61-174 (401)
101 cd01494 AAT_I Aspartate aminot 55.0 1.1E+02 0.0025 27.7 9.7 100 453-561 16-127 (170)
102 cd01972 Nitrogenase_VnfE_like 54.8 3E+02 0.0065 30.8 14.7 95 454-562 292-399 (426)
103 TIGR01979 sufS cysteine desulf 54.8 2.4E+02 0.0053 30.5 13.7 103 455-563 81-196 (403)
104 PRK05443 polyphosphate kinase; 54.5 36 0.00078 41.0 7.7 50 463-513 379-430 (691)
105 PRK05958 8-amino-7-oxononanoat 54.4 2.8E+02 0.006 29.5 13.9 97 452-561 97-203 (385)
106 PRK15482 transcriptional regul 53.3 2.1E+02 0.0047 29.9 12.6 43 487-529 191-233 (285)
107 PLN02331 phosphoribosylglycina 52.8 74 0.0016 32.6 8.7 75 457-535 3-92 (207)
108 PF02142 MGS: MGS-like domain 52.7 30 0.00065 30.5 5.2 77 469-560 4-94 (95)
109 TIGR01019 sucCoAalpha succinyl 52.6 71 0.0015 34.4 8.9 103 456-560 65-171 (286)
110 TIGR00045 glycerate kinase. Th 52.6 16 0.00034 40.8 4.1 63 493-569 266-328 (375)
111 PRK07865 N-succinyldiaminopime 52.6 1E+02 0.0022 33.1 10.3 95 452-561 84-186 (364)
112 PRK14101 bifunctional glucokin 52.4 3E+02 0.0065 32.6 14.8 83 445-528 458-564 (638)
113 COG1929 Glycerate kinase [Carb 52.3 17 0.00036 40.4 4.1 64 492-569 266-329 (378)
114 cd01423 MGS_CPS_I_III Methylgl 51.9 70 0.0015 29.0 7.6 88 457-562 3-107 (116)
115 PF13090 PP_kinase_C: Polyphos 51.9 14 0.0003 40.7 3.5 49 462-512 48-99 (352)
116 PF10087 DUF2325: Uncharacteri 51.9 68 0.0015 28.4 7.3 60 497-563 15-82 (97)
117 PRK07309 aromatic amino acid a 51.6 1.3E+02 0.0029 32.8 11.1 101 454-561 91-204 (391)
118 PRK07812 O-acetylhomoserine am 51.6 1.2E+02 0.0026 34.3 11.0 99 457-563 87-192 (436)
119 PRK05968 hypothetical protein; 51.4 1.6E+02 0.0034 32.5 11.7 100 456-563 80-184 (389)
120 PRK13938 phosphoheptose isomer 51.4 2.8E+02 0.006 28.1 12.7 37 492-528 127-163 (196)
121 PF04016 DUF364: Domain of unk 51.3 42 0.00092 32.3 6.4 99 452-575 8-107 (147)
122 PRK06702 O-acetylhomoserine am 51.2 1.4E+02 0.0029 34.0 11.3 100 456-562 78-183 (432)
123 PRK05749 3-deoxy-D-manno-octul 51.1 1E+02 0.0022 33.8 10.2 97 454-564 49-155 (425)
124 TIGR03392 FeS_syn_CsdA cystein 51.0 2.3E+02 0.0049 30.8 12.7 101 455-561 79-192 (398)
125 cd06453 SufS_like Cysteine des 51.0 2.3E+02 0.005 30.2 12.6 102 456-563 63-176 (373)
126 cd06436 GlcNAc-1-P_transferase 50.6 57 0.0012 31.6 7.3 42 458-499 3-44 (191)
127 PRK10874 cysteine sulfinate de 50.6 2.5E+02 0.0053 30.6 12.9 102 455-562 82-196 (401)
128 PRK14012 cysteine desulfurase; 50.5 3.5E+02 0.0076 29.5 14.2 101 456-561 68-179 (404)
129 PRK10342 glycerate kinase I; P 50.5 19 0.00042 40.2 4.4 63 493-569 267-329 (381)
130 PRK06234 methionine gamma-lyas 50.2 1.6E+02 0.0034 32.7 11.5 98 456-561 81-186 (400)
131 TIGR00639 PurN phosphoribosylg 50.0 91 0.002 31.4 8.7 75 457-534 4-92 (190)
132 PF00266 Aminotran_5: Aminotra 49.9 1.6E+02 0.0034 31.7 11.2 102 455-562 62-175 (371)
133 PRK07503 methionine gamma-lyas 49.7 1.8E+02 0.0038 32.4 11.8 97 457-561 83-185 (403)
134 PRK08045 cystathionine gamma-s 49.4 1.3E+02 0.0029 33.2 10.7 98 456-561 69-172 (386)
135 TIGR02371 ala_DH_arch alanine 49.2 1.1E+02 0.0024 33.1 9.9 98 447-547 118-225 (325)
136 TIGR01328 met_gam_lyase methio 49.1 2E+02 0.0043 31.9 12.0 97 457-561 77-179 (391)
137 CHL00144 odpB pyruvate dehydro 49.1 60 0.0013 35.3 7.8 68 497-569 219-298 (327)
138 cd01974 Nitrogenase_MoFe_beta 49.1 4.3E+02 0.0094 29.7 16.4 94 454-563 302-402 (435)
139 PRK13479 2-aminoethylphosphona 49.0 2.5E+02 0.0053 30.1 12.5 100 456-562 57-167 (368)
140 PRK07683 aminotransferase A; V 49.0 1.4E+02 0.0031 32.5 10.8 93 456-561 91-199 (387)
141 PLN03209 translocon at the inn 48.9 50 0.0011 38.9 7.6 111 453-566 78-209 (576)
142 PRK08114 cystathionine beta-ly 48.7 89 0.0019 35.0 9.3 100 452-561 74-184 (395)
143 COG2242 CobL Precorrin-6B meth 48.7 1.1E+02 0.0024 31.2 8.9 88 451-551 31-123 (187)
144 PRK09028 cystathionine beta-ly 48.5 1.5E+02 0.0033 33.1 11.0 94 456-561 78-181 (394)
145 PLN02828 formyltetrahydrofolat 48.5 69 0.0015 34.2 7.9 73 456-529 73-154 (268)
146 PF05368 NmrA: NmrA-like famil 48.3 76 0.0017 31.6 8.0 98 458-564 1-102 (233)
147 TIGR03458 YgfH_subfam succinat 48.2 1.8E+02 0.0038 33.8 11.7 117 446-563 6-156 (485)
148 TIGR01977 am_tr_V_EF2568 cyste 48.2 3.2E+02 0.007 29.1 13.2 99 456-561 64-172 (376)
149 cd03466 Nitrogenase_NifN_2 Nit 47.8 4.5E+02 0.0098 29.6 15.5 96 454-563 299-397 (429)
150 PRK05647 purN phosphoribosylgl 47.8 78 0.0017 32.1 7.9 76 457-535 5-94 (200)
151 PRK07568 aspartate aminotransf 47.8 1.5E+02 0.0032 32.1 10.7 95 453-561 87-200 (397)
152 PF05159 Capsule_synth: Capsul 47.7 1E+02 0.0022 32.0 9.0 93 457-566 131-228 (269)
153 PRK09331 Sep-tRNA:Cys-tRNA syn 47.2 1.8E+02 0.0039 31.8 11.3 15 547-561 179-193 (387)
154 COG3109 ProQ Activator of osmo 47.0 28 0.0006 35.0 4.4 25 197-221 103-127 (208)
155 PRK08056 threonine-phosphate d 46.7 1.6E+02 0.0035 31.6 10.6 94 452-561 70-180 (356)
156 PLN02206 UDP-glucuronate decar 46.5 76 0.0016 35.9 8.4 109 454-566 118-235 (442)
157 COG1091 RfbD dTDP-4-dehydrorha 46.3 59 0.0013 35.0 7.1 96 458-572 3-108 (281)
158 PRK09295 bifunctional cysteine 46.3 2.4E+02 0.0051 30.9 12.0 101 455-561 86-199 (406)
159 PRK09411 carbamate kinase; Rev 46.3 53 0.0012 35.6 6.8 61 445-507 33-98 (297)
160 COG2987 HutU Urocanate hydrata 46.1 1.3E+02 0.0028 34.7 9.7 112 375-490 217-370 (561)
161 cd06450 DOPA_deC_like DOPA dec 46.0 3.4E+02 0.0074 28.4 12.8 101 455-562 58-184 (345)
162 PF00148 Oxidored_nitro: Nitro 46.0 4.4E+02 0.0094 28.9 16.7 107 440-564 258-367 (398)
163 PLN02260 probable rhamnose bio 45.9 75 0.0016 37.4 8.6 89 479-568 379-485 (668)
164 PRK11302 DNA-binding transcrip 45.7 3E+02 0.0065 28.5 12.2 45 483-528 180-224 (284)
165 PLN02683 pyruvate dehydrogenas 45.1 76 0.0016 35.1 7.9 85 451-564 224-320 (356)
166 TIGR03705 poly_P_kin polyphosp 45.1 54 0.0012 39.4 7.2 50 462-512 369-420 (672)
167 PF01380 SIS: SIS domain SIS d 44.8 1.7E+02 0.0037 26.1 9.0 52 479-530 53-105 (131)
168 cd01988 Na_H_Antiporter_C The 44.7 2.2E+02 0.0048 25.0 11.9 60 500-562 64-131 (132)
169 TIGR02326 transamin_PhnW 2-ami 44.6 2.9E+02 0.0062 29.5 12.2 99 457-562 57-165 (363)
170 TIGR03538 DapC_gpp succinyldia 44.6 1.6E+02 0.0034 32.1 10.2 93 456-560 92-202 (393)
171 PRK12655 fructose-6-phosphate 44.5 1.9E+02 0.0042 30.0 10.3 97 464-567 62-168 (220)
172 TIGR02080 O_succ_thio_ly O-suc 44.5 1.9E+02 0.0042 31.9 11.0 98 456-561 68-171 (382)
173 TIGR03590 PseG pseudaminic aci 44.4 2.5E+02 0.0053 29.5 11.4 91 456-564 172-268 (279)
174 PRK07504 O-succinylhomoserine 44.4 2.4E+02 0.0052 31.3 11.8 96 458-561 84-185 (398)
175 PRK05939 hypothetical protein; 44.3 2.4E+02 0.0051 31.4 11.7 94 456-561 64-166 (397)
176 PF01053 Cys_Met_Meta_PP: Cys/ 44.2 1.8E+02 0.004 32.4 10.8 103 452-561 67-176 (386)
177 PTZ00187 succinyl-CoA syntheta 44.0 90 0.0019 34.2 8.1 102 456-561 90-198 (317)
178 cd00609 AAT_like Aspartate ami 43.8 1.1E+02 0.0024 31.6 8.6 103 454-563 59-172 (350)
179 PRK10481 hypothetical protein; 43.7 2.8E+02 0.0061 28.9 11.3 85 471-561 122-211 (224)
180 PLN02778 3,5-epimerase/4-reduc 43.6 80 0.0017 33.3 7.6 26 540-565 86-111 (298)
181 PRK08861 cystathionine gamma-s 43.6 1.8E+02 0.0039 32.4 10.6 98 456-561 70-173 (388)
182 PRK05764 aspartate aminotransf 43.4 1.9E+02 0.004 31.3 10.6 96 452-561 89-202 (393)
183 COG1104 NifS Cysteine sulfinat 43.3 2.2E+02 0.0047 32.2 11.1 100 454-561 61-176 (386)
184 TIGR01324 cysta_beta_ly_B cyst 42.8 2.4E+02 0.0051 31.2 11.4 94 456-561 67-170 (377)
185 PLN02591 tryptophan synthase 42.7 2.7E+02 0.006 29.3 11.3 102 456-562 81-195 (250)
186 cd00287 ribokinase_pfkB_like r 42.7 69 0.0015 30.6 6.4 69 478-563 23-91 (196)
187 PRK05994 O-acetylhomoserine am 42.5 1.9E+02 0.0041 32.5 10.7 96 457-561 81-183 (427)
188 PF05185 PRMT5: PRMT5 arginine 42.5 84 0.0018 35.9 8.0 71 455-527 187-263 (448)
189 PRK13936 phosphoheptose isomer 42.1 3.7E+02 0.008 26.9 13.4 34 495-528 128-164 (197)
190 PF04392 ABC_sub_bind: ABC tra 42.0 16 0.00034 38.4 2.0 39 521-566 183-221 (294)
191 PLN02656 tyrosine transaminase 42.0 2.4E+02 0.0051 31.1 11.3 97 452-561 94-207 (409)
192 TIGR01976 am_tr_V_VC1184 cyste 41.9 4.8E+02 0.01 28.1 14.7 16 546-561 176-191 (397)
193 PRK13011 formyltetrahydrofolat 41.9 77 0.0017 34.0 7.1 73 456-534 92-178 (286)
194 PRK12767 carbamoyl phosphate s 41.5 37 0.0008 35.8 4.7 41 457-498 3-43 (326)
195 PRK08249 cystathionine gamma-s 41.4 2.6E+02 0.0056 31.1 11.5 98 456-561 81-184 (398)
196 PRK11543 gutQ D-arabinose 5-ph 41.2 4.3E+02 0.0093 28.0 12.7 38 492-529 103-140 (321)
197 PRK12414 putative aminotransfe 41.2 3.2E+02 0.0069 29.7 12.0 97 455-561 91-200 (384)
198 TIGR03537 DapC succinyldiamino 40.9 2.2E+02 0.0049 30.3 10.6 94 456-561 62-174 (350)
199 PRK12320 hypothetical protein; 40.3 50 0.0011 39.8 5.9 99 457-565 2-103 (699)
200 PRK15116 sulfur acceptor prote 40.2 3E+02 0.0066 29.3 11.2 118 443-571 19-162 (268)
201 TIGR01584 citF citrate lyase, 40.2 1E+02 0.0022 35.8 8.0 35 440-474 231-273 (492)
202 TIGR02429 pcaI_scoA_fam 3-oxoa 40.1 1.9E+02 0.004 30.1 9.4 98 446-562 10-122 (222)
203 cd05006 SIS_GmhA Phosphoheptos 40.0 3.6E+02 0.0077 26.1 12.2 45 485-529 108-152 (177)
204 PRK07765 para-aminobenzoate sy 40.0 1.3E+02 0.0029 30.6 8.2 80 482-568 2-88 (214)
205 PRK03369 murD UDP-N-acetylmura 39.8 1.7E+02 0.0037 33.4 10.0 91 452-561 9-99 (488)
206 PRK08462 biotin carboxylase; V 39.6 55 0.0012 36.6 5.9 80 456-537 5-91 (445)
207 cd08769 DAP_dppA_2 Peptidase M 39.4 60 0.0013 34.7 5.8 39 531-571 124-162 (270)
208 PRK13937 phosphoheptose isomer 39.3 3.9E+02 0.0085 26.4 12.6 36 493-528 121-156 (188)
209 cd00956 Transaldolase_FSA Tran 39.2 4.4E+02 0.0095 26.9 12.2 97 464-566 60-165 (211)
210 CHL00194 ycf39 Ycf39; Provisio 39.1 1.2E+02 0.0025 32.1 8.0 102 457-565 2-110 (317)
211 PRK05234 mgsA methylglyoxal sy 39.0 2.1E+02 0.0046 27.5 9.0 86 469-565 21-115 (142)
212 PRK08618 ornithine cyclodeamin 38.8 2.5E+02 0.0054 30.3 10.6 90 454-546 126-223 (325)
213 PLN02187 rooty/superroot1 38.8 2.7E+02 0.0059 31.5 11.3 103 452-561 129-242 (462)
214 PRK08175 aminotransferase; Val 38.7 86 0.0019 34.2 7.1 92 456-561 93-202 (395)
215 PRK10537 voltage-gated potassi 38.5 5.6E+02 0.012 28.8 13.5 92 455-565 240-338 (393)
216 PRK06767 methionine gamma-lyas 38.5 2.7E+02 0.0059 30.6 11.0 98 456-561 78-181 (386)
217 COG0074 SucD Succinyl-CoA synt 38.4 1.4E+02 0.0031 32.3 8.3 103 456-560 67-173 (293)
218 PRK06084 O-acetylhomoserine am 38.4 2.1E+02 0.0045 32.2 10.2 98 456-561 75-178 (425)
219 COG0373 HemA Glutamyl-tRNA red 37.9 1.3E+02 0.0028 34.2 8.4 71 454-531 177-247 (414)
220 cd00615 Orn_deC_like Ornithine 37.9 3.2E+02 0.007 28.5 11.1 97 456-563 76-190 (294)
221 cd01483 E1_enzyme_family Super 37.9 1.9E+02 0.0042 26.8 8.5 97 458-564 2-122 (143)
222 PRK06836 aspartate aminotransf 37.5 2.7E+02 0.0059 30.3 10.8 55 452-512 94-148 (394)
223 PRK07178 pyruvate carboxylase 37.5 71 0.0015 36.3 6.4 81 456-536 3-87 (472)
224 PF02844 GARS_N: Phosphoribosy 37.4 83 0.0018 28.8 5.6 83 457-560 2-90 (100)
225 PRK05967 cystathionine beta-ly 37.2 2.7E+02 0.0058 31.3 10.8 98 456-561 81-184 (395)
226 PRK00377 cbiT cobalt-precorrin 37.1 1.3E+02 0.0029 29.7 7.6 76 451-529 37-118 (198)
227 PF02595 Gly_kinase: Glycerate 36.9 17 0.00038 40.5 1.4 64 492-569 266-329 (377)
228 cd06433 GT_2_WfgS_like WfgS an 36.9 2.7E+02 0.0058 25.9 9.4 47 457-503 3-50 (202)
229 TIGR00858 bioF 8-amino-7-oxono 36.6 4E+02 0.0087 27.8 11.6 93 456-561 78-181 (360)
230 TIGR01825 gly_Cac_T_rel pyrido 36.2 3.2E+02 0.0069 29.3 10.9 96 456-561 95-198 (385)
231 PRK06348 aspartate aminotransf 36.2 2.6E+02 0.0055 30.4 10.3 95 452-560 87-199 (384)
232 PTZ00182 3-methyl-2-oxobutanat 36.0 1.9E+02 0.0041 32.0 9.2 47 517-568 279-329 (355)
233 PRK07550 hypothetical protein; 36.0 2.5E+02 0.0055 30.4 10.2 102 452-561 88-201 (386)
234 PRK09147 succinyldiaminopimela 36.0 2.4E+02 0.0051 30.7 10.0 93 456-560 92-203 (396)
235 PRK13111 trpA tryptophan synth 35.7 5.4E+02 0.012 27.2 12.2 105 456-562 92-206 (258)
236 smart00851 MGS MGS-like domain 35.7 2.5E+02 0.0054 24.2 8.3 77 470-560 5-89 (90)
237 PRK06939 2-amino-3-ketobutyrat 35.6 1.3E+02 0.0028 32.3 7.8 29 537-566 181-213 (397)
238 cd05212 NAD_bind_m-THF_DH_Cycl 35.6 2.1E+02 0.0045 27.5 8.4 43 488-530 35-79 (140)
239 PRK06108 aspartate aminotransf 35.6 2.9E+02 0.0063 29.6 10.5 96 452-561 82-196 (382)
240 PRK06141 ornithine cyclodeamin 35.3 3E+02 0.0065 29.6 10.5 90 454-546 124-221 (314)
241 cd06452 SepCysS Sep-tRNA:Cys-t 35.3 4.2E+02 0.0091 28.3 11.7 98 456-563 61-176 (361)
242 PRK08247 cystathionine gamma-s 35.3 4.9E+02 0.011 28.3 12.3 96 457-566 70-175 (366)
243 PRK03244 argD acetylornithine 35.2 3.8E+02 0.0082 29.1 11.4 101 456-561 105-222 (398)
244 PRK13527 glutamine amidotransf 35.0 86 0.0019 31.3 5.9 83 481-568 3-89 (200)
245 PRK01362 putative translaldola 34.9 3.9E+02 0.0085 27.6 10.7 97 464-566 60-165 (214)
246 TIGR03609 S_layer_CsaB polysac 34.7 1E+02 0.0022 32.3 6.7 52 515-566 57-109 (298)
247 PF01113 DapB_N: Dihydrodipico 34.7 66 0.0014 29.8 4.7 96 457-566 2-101 (124)
248 cd01973 Nitrogenase_VFe_beta_l 34.7 7.4E+02 0.016 28.3 16.7 150 394-566 258-410 (454)
249 PRK02705 murD UDP-N-acetylmura 34.5 2.3E+02 0.005 31.6 9.8 71 458-530 3-76 (459)
250 PRK15005 universal stress prot 34.5 1.1E+02 0.0024 27.8 6.2 36 522-562 107-143 (144)
251 PRK07688 thiamine/molybdopteri 34.4 4.5E+02 0.0099 28.8 11.8 109 444-563 14-148 (339)
252 cd00757 ThiF_MoeB_HesA_family 34.2 2E+02 0.0044 29.2 8.6 109 444-563 11-143 (228)
253 PF03709 OKR_DC_1_N: Orn/Lys/A 34.2 46 0.00099 30.6 3.5 67 495-566 7-77 (115)
254 PRK07324 transaminase; Validat 34.2 1.9E+02 0.0041 31.4 8.9 103 452-561 78-191 (373)
255 cd00613 GDC-P Glycine cleavage 34.1 5E+02 0.011 28.0 12.0 99 456-561 83-194 (398)
256 PRK13789 phosphoribosylamine-- 34.0 76 0.0017 35.7 5.9 77 456-537 5-83 (426)
257 TIGR02356 adenyl_thiF thiazole 34.0 3.4E+02 0.0074 27.2 10.0 109 444-563 11-143 (202)
258 PRK12656 fructose-6-phosphate 34.0 3.1E+02 0.0067 28.6 9.8 63 467-535 66-132 (222)
259 PLN02242 methionine gamma-lyas 33.9 3.5E+02 0.0077 30.3 11.1 99 456-561 93-198 (418)
260 PRK10116 universal stress prot 33.6 3.6E+02 0.0079 24.4 10.1 36 522-562 102-137 (142)
261 TIGR03217 4OH_2_O_val_ald 4-hy 33.3 2E+02 0.0043 31.6 8.8 60 457-516 105-167 (333)
262 PRK08912 hypothetical protein; 33.3 4.1E+02 0.009 28.7 11.3 91 456-560 89-196 (387)
263 PF04413 Glycos_transf_N: 3-De 33.3 1.4E+02 0.0031 29.8 7.1 95 456-564 22-126 (186)
264 PLN00143 tyrosine/nicotianamin 33.2 4.6E+02 0.01 28.9 11.8 107 441-561 80-208 (409)
265 PLN02214 cinnamoyl-CoA reducta 33.0 2.8E+02 0.0061 29.7 9.8 108 454-563 9-125 (342)
266 PRK00414 gmhA phosphoheptose i 32.7 5.2E+02 0.011 25.8 13.4 42 487-528 120-161 (192)
267 TIGR03492 conserved hypothetic 32.6 4.1E+02 0.009 29.5 11.3 34 515-563 289-322 (396)
268 cd02525 Succinoglycan_BP_ExoA 32.5 1.5E+02 0.0032 29.0 7.1 55 458-512 6-63 (249)
269 PF06574 FAD_syn: FAD syntheta 32.5 2.8E+02 0.0061 27.0 8.8 106 455-564 5-145 (157)
270 COG0707 MurG UDP-N-acetylgluco 32.3 2.3E+02 0.0049 31.4 9.1 97 454-567 182-283 (357)
271 PRK09288 purT phosphoribosylgl 32.2 68 0.0015 34.9 5.0 72 455-533 12-86 (395)
272 PRK06225 aspartate aminotransf 32.2 2.8E+02 0.0061 29.9 9.8 100 453-562 82-196 (380)
273 PRK00207 sulfur transfer compl 32.1 72 0.0016 30.1 4.5 72 483-566 4-82 (128)
274 PLN02509 cystathionine beta-ly 32.0 4.2E+02 0.0091 30.4 11.4 92 457-561 151-252 (464)
275 PRK13566 anthranilate synthase 31.9 1.5E+02 0.0034 35.9 8.3 83 477-566 523-608 (720)
276 cd00611 PSAT_like Phosphoserin 31.8 4.8E+02 0.01 28.2 11.4 97 454-563 62-170 (355)
277 TIGR01264 tyr_amTase_E tyrosin 31.7 3.1E+02 0.0067 29.9 10.1 96 452-561 93-206 (401)
278 PRK00726 murG undecaprenyldiph 31.7 5E+02 0.011 27.5 11.4 93 455-564 183-280 (357)
279 TIGR03499 FlhF flagellar biosy 31.7 6.5E+02 0.014 26.6 16.5 75 454-528 193-278 (282)
280 PRK05957 aspartate aminotransf 31.6 3.6E+02 0.0078 29.3 10.5 93 455-561 90-198 (389)
281 COG0608 RecJ Single-stranded D 31.6 1.7E+02 0.0037 33.5 8.3 85 442-531 23-122 (491)
282 PRK07681 aspartate aminotransf 31.3 2.9E+02 0.0062 30.2 9.7 98 455-560 94-203 (399)
283 TIGR01133 murG undecaprenyldip 31.3 4.5E+02 0.0098 27.4 10.9 54 496-563 223-277 (348)
284 PRK07340 ornithine cyclodeamin 31.3 3.6E+02 0.0079 28.9 10.3 89 454-546 124-219 (304)
285 PRK07050 cystathionine beta-ly 31.2 4.9E+02 0.011 28.8 11.6 98 456-561 82-185 (394)
286 PF00411 Ribosomal_S11: Riboso 31.2 1.4E+02 0.003 27.5 6.1 47 465-514 47-95 (110)
287 cd05013 SIS_RpiR RpiR-like pro 31.1 3.3E+02 0.0071 24.2 8.6 38 492-529 74-111 (139)
288 PF00582 Usp: Universal stress 31.1 3.4E+02 0.0074 23.3 10.9 38 522-562 102-139 (140)
289 COG0451 WcaG Nucleoside-diphos 31.0 1.3E+02 0.0028 30.9 6.6 101 458-565 3-116 (314)
290 PRK06460 hypothetical protein; 31.0 5.2E+02 0.011 28.3 11.7 58 500-561 104-165 (376)
291 PRK05562 precorrin-2 dehydroge 30.7 2.9E+02 0.0063 28.7 9.0 95 454-564 24-118 (223)
292 PRK05784 phosphoribosylamine-- 30.6 60 0.0013 37.3 4.5 77 457-534 2-81 (486)
293 TIGR00746 arcC carbamate kinas 30.5 3.1E+02 0.0066 30.0 9.5 30 443-472 30-60 (310)
294 PRK08064 cystathionine beta-ly 30.4 5.4E+02 0.012 28.4 11.7 97 456-561 71-173 (390)
295 PLN02855 Bifunctional selenocy 30.4 5.9E+02 0.013 28.0 12.1 101 455-561 95-208 (424)
296 TIGR01469 cobA_cysG_Cterm urop 30.3 5.8E+02 0.013 25.7 11.3 54 467-521 66-122 (236)
297 PRK08960 hypothetical protein; 30.2 2.9E+02 0.0063 29.9 9.5 95 452-560 90-202 (387)
298 PRK06207 aspartate aminotransf 30.1 5.4E+02 0.012 28.3 11.7 92 455-560 103-215 (405)
299 PRK08591 acetyl-CoA carboxylas 30.1 94 0.002 34.7 5.8 80 456-537 3-89 (451)
300 COG0031 CysK Cysteine synthase 30.0 1.3E+02 0.0028 32.8 6.5 176 345-530 70-264 (300)
301 PRK07777 aminotransferase; Val 29.9 5.4E+02 0.012 27.8 11.5 50 456-511 87-136 (387)
302 PRK08361 aspartate aminotransf 29.9 3.7E+02 0.008 29.2 10.2 103 452-561 91-204 (391)
303 PRK15456 universal stress prot 29.9 1.6E+02 0.0034 27.0 6.4 37 522-562 105-141 (142)
304 TIGR00875 fsa_talC_mipB fructo 29.8 5.2E+02 0.011 26.6 10.6 66 464-535 60-128 (213)
305 PRK11892 pyruvate dehydrogenas 29.8 2.2E+02 0.0048 32.7 8.7 66 496-566 357-434 (464)
306 PRK07589 ornithine cyclodeamin 29.5 4.5E+02 0.0098 29.0 10.8 99 446-547 118-228 (346)
307 PRK12771 putative glutamate sy 29.4 4.3E+02 0.0094 30.6 11.2 77 452-530 134-230 (564)
308 TIGR03693 ocin_ThiF_like putat 29.4 6.5E+02 0.014 30.4 12.4 100 454-561 128-236 (637)
309 PRK14478 nitrogenase molybdenu 29.4 9.1E+02 0.02 27.7 14.3 141 396-562 271-417 (475)
310 PF12842 DUF3819: Domain of un 28.9 5.4E+02 0.012 24.9 10.5 93 351-451 29-126 (147)
311 KOG1549 Cysteine desulfurase N 28.8 9.4E+02 0.02 27.7 13.5 109 450-561 96-216 (428)
312 TIGR01822 2am3keto_CoA 2-amino 28.8 2.3E+02 0.0051 30.5 8.4 16 546-561 190-205 (393)
313 cd01996 Alpha_ANH_like_III Thi 28.8 4.8E+02 0.01 24.3 9.9 101 456-564 3-110 (154)
314 PLN00145 tyrosine/nicotianamin 28.8 2.1E+02 0.0046 31.9 8.3 96 452-561 115-228 (430)
315 TIGR03812 tyr_de_CO2_Arch tyro 28.6 6.5E+02 0.014 26.7 11.7 101 454-563 76-190 (373)
316 PF00670 AdoHcyase_NAD: S-aden 28.3 2.1E+02 0.0046 28.4 7.2 69 448-528 16-84 (162)
317 COG0075 Serine-pyruvate aminot 28.2 7.4E+02 0.016 28.0 12.2 102 454-563 55-168 (383)
318 PRK08636 aspartate aminotransf 27.8 4.7E+02 0.01 28.6 10.7 99 456-561 97-213 (403)
319 PRK02910 light-independent pro 27.8 1E+03 0.022 27.7 16.5 92 454-563 292-387 (519)
320 cd00640 Trp-synth-beta_II Tryp 27.7 4.6E+02 0.01 26.5 9.9 57 454-514 49-105 (244)
321 PF13580 SIS_2: SIS domain; PD 27.6 1.4E+02 0.0031 27.9 5.8 29 452-480 101-132 (138)
322 PRK07179 hypothetical protein; 27.4 5.1E+02 0.011 28.4 10.8 97 455-561 115-216 (407)
323 PRK07366 succinyldiaminopimela 27.3 3.9E+02 0.0085 28.9 9.9 51 456-512 94-144 (388)
324 COG1648 CysG Siroheme synthase 27.3 2.5E+02 0.0053 28.9 7.7 96 454-565 11-106 (210)
325 PRK13010 purU formyltetrahydro 27.2 2.3E+02 0.005 30.5 7.8 51 456-512 96-148 (289)
326 PRK08762 molybdopterin biosynt 27.1 5.3E+02 0.011 28.4 10.9 109 444-563 125-257 (376)
327 cd01965 Nitrogenase_MoFe_beta_ 27.0 9.2E+02 0.02 27.0 16.5 96 454-563 298-396 (428)
328 TIGR01214 rmlD dTDP-4-dehydror 26.9 1.6E+02 0.0035 30.0 6.5 27 540-566 76-102 (287)
329 cd01491 Ube1_repeat1 Ubiquitin 26.9 4.3E+02 0.0093 28.5 9.8 109 444-563 9-137 (286)
330 PLN00203 glutamyl-tRNA reducta 26.7 3.5E+02 0.0076 31.6 9.7 71 455-529 266-336 (519)
331 cd04185 GT_2_like_b Subfamily 26.7 3.2E+02 0.007 26.0 8.2 45 457-501 2-47 (202)
332 PRK02472 murD UDP-N-acetylmura 26.7 4.2E+02 0.009 29.4 10.1 92 454-560 4-96 (447)
333 PRK08776 cystathionine gamma-s 26.5 6.8E+02 0.015 27.9 11.7 98 456-561 77-180 (405)
334 TIGR01110 mdcA malonate decarb 26.5 6.5E+02 0.014 29.7 11.6 134 426-564 12-182 (543)
335 TIGR00655 PurU formyltetrahydr 26.5 2.2E+02 0.0048 30.5 7.6 67 457-529 88-167 (280)
336 TIGR01963 PHB_DH 3-hydroxybuty 26.4 3.7E+02 0.0081 26.5 8.9 104 456-563 2-135 (255)
337 PTZ00411 transaldolase-like pr 26.3 8.3E+02 0.018 27.0 12.0 54 464-520 112-175 (333)
338 TIGR01814 kynureninase kynuren 26.2 6.3E+02 0.014 27.6 11.3 103 454-561 86-206 (406)
339 PRK07523 gluconate 5-dehydroge 26.2 3.7E+02 0.0081 26.8 8.9 108 454-565 9-146 (255)
340 PRK08363 alanine aminotransfer 26.1 3.4E+02 0.0075 29.5 9.2 53 453-511 92-144 (398)
341 PLN02166 dTDP-glucose 4,6-dehy 25.9 2.3E+02 0.005 32.0 7.9 107 455-565 120-235 (436)
342 PRK12354 carbamate kinase; Rev 25.9 1.7E+02 0.0038 31.9 6.6 56 444-500 31-90 (307)
343 cd06442 DPM1_like DPM1_like re 25.8 2.1E+02 0.0045 27.7 6.8 21 469-489 43-63 (224)
344 PF04951 Peptidase_M55: D-amin 25.8 77 0.0017 33.8 3.9 39 532-572 125-163 (265)
345 PRK06425 histidinol-phosphate 25.8 2.9E+02 0.0064 29.3 8.4 94 454-561 57-160 (332)
346 PRK13392 5-aminolevulinate syn 25.7 9E+02 0.02 26.4 13.9 110 450-567 102-218 (410)
347 TIGR01521 FruBisAldo_II_B fruc 25.6 2.4E+02 0.0051 31.4 7.7 104 454-560 14-138 (347)
348 PRK11242 DNA-binding transcrip 25.6 7.2E+02 0.016 25.3 13.2 138 381-533 18-165 (296)
349 PRK12342 hypothetical protein; 25.5 3.6E+02 0.0078 28.6 8.8 89 457-569 55-149 (254)
350 COG0549 ArcC Carbamate kinase 25.4 1.4E+02 0.0031 32.5 5.7 63 444-507 31-105 (312)
351 cd01971 Nitrogenase_VnfN_like 25.4 9.9E+02 0.022 26.8 17.8 98 455-563 293-396 (427)
352 cd06502 TA_like Low-specificit 25.4 5.2E+02 0.011 26.9 10.1 102 454-561 47-164 (338)
353 cd01979 Pchlide_reductase_N Pc 25.3 1.9E+02 0.0041 32.1 7.0 91 464-563 138-230 (396)
354 PRK06027 purU formyltetrahydro 25.2 2.3E+02 0.005 30.3 7.4 73 456-534 92-178 (286)
355 PRK09196 fructose-1,6-bisphosp 25.1 2.3E+02 0.0051 31.5 7.6 103 455-560 17-140 (347)
356 PF08484 Methyltransf_14: C-me 25.1 1.4E+02 0.0031 29.3 5.3 59 438-497 51-109 (160)
357 PRK08063 enoyl-(acyl carrier p 25.0 3.5E+02 0.0076 26.7 8.4 97 455-554 4-126 (250)
358 TIGR03403 nifS_epsilon cystein 24.9 8.9E+02 0.019 26.0 12.5 102 454-561 60-175 (382)
359 cd02522 GT_2_like_a GT_2_like_ 24.7 5.1E+02 0.011 24.8 9.3 41 458-498 5-46 (221)
360 PRK06176 cystathionine gamma-s 24.7 8.1E+02 0.017 27.0 11.8 96 457-561 68-169 (380)
361 PF08659 KR: KR domain; Inter 24.7 6.5E+02 0.014 24.4 10.0 106 458-565 4-136 (181)
362 cd01980 Chlide_reductase_Y Chl 24.6 9E+02 0.02 27.1 12.3 112 431-564 260-376 (416)
363 TIGR01142 purT phosphoribosylg 24.6 1.9E+02 0.0042 31.2 6.9 72 457-534 1-74 (380)
364 PRK15029 arginine decarboxylas 24.6 2.5E+02 0.0055 34.4 8.3 83 482-567 2-96 (755)
365 PRK09257 aromatic amino acid a 24.6 7.1E+02 0.015 27.1 11.3 98 458-561 98-210 (396)
366 PRK15062 hydrogenase isoenzyme 24.6 2E+02 0.0043 32.2 6.8 49 512-563 171-219 (364)
367 PRK15418 transcriptional regul 24.5 5.2E+02 0.011 28.1 10.1 88 445-535 106-214 (318)
368 TIGR02931 anfK_nitrog Fe-only 24.5 1.1E+03 0.024 27.0 15.9 101 454-563 311-413 (461)
369 PRK00770 deoxyhypusine synthas 24.4 1.2E+02 0.0025 34.3 5.1 111 453-564 50-196 (384)
370 TIGR02434 CobF precorrin-6A sy 24.2 3.2E+02 0.007 28.7 8.1 24 539-563 183-206 (249)
371 PF08032 SpoU_sub_bind: RNA 2' 24.2 1.9E+02 0.0041 23.8 5.3 51 470-520 7-58 (76)
372 PLN00175 aminotransferase fami 24.2 6.9E+02 0.015 27.6 11.2 91 456-560 117-224 (413)
373 PRK09212 pyruvate dehydrogenas 24.2 5E+02 0.011 28.2 9.9 61 499-564 221-293 (327)
374 PF07046 CRA_rpt: Cytoplasmic 24.1 86 0.0019 24.3 2.8 27 191-217 3-29 (42)
375 PRK02948 cysteine desulfurase; 24.1 9.1E+02 0.02 25.9 14.9 103 454-561 60-173 (381)
376 COG0771 MurD UDP-N-acetylmuram 24.1 1.4E+02 0.0031 34.1 5.9 69 455-528 7-75 (448)
377 cd01080 NAD_bind_m-THF_DH_Cycl 24.1 4.3E+02 0.0093 26.1 8.6 52 454-530 43-95 (168)
378 PF13241 NAD_binding_7: Putati 24.0 1E+02 0.0022 27.5 3.9 87 454-563 6-92 (103)
379 PRK02006 murD UDP-N-acetylmura 23.8 4.5E+02 0.0098 29.9 9.9 71 455-530 7-77 (498)
380 PRK07505 hypothetical protein; 23.8 7.8E+02 0.017 26.9 11.4 101 456-561 107-214 (402)
381 TIGR01182 eda Entner-Doudoroff 23.7 2.3E+02 0.0049 29.1 6.7 77 485-561 13-106 (204)
382 PLN00125 Succinyl-CoA ligase [ 23.6 4.2E+02 0.0092 28.8 9.1 103 456-560 71-178 (300)
383 PF05690 ThiG: Thiazole biosyn 23.6 52 0.0011 34.7 2.1 84 450-538 118-206 (247)
384 PLN02695 GDP-D-mannose-3',5'-e 23.6 3.3E+02 0.0072 29.6 8.5 107 451-565 17-137 (370)
385 KOG1000 Chromatin remodeling p 23.6 9.8E+02 0.021 28.4 12.1 75 454-528 491-568 (689)
386 PRK06358 threonine-phosphate d 23.5 5.1E+02 0.011 27.8 9.8 94 452-561 69-179 (354)
387 PRK06015 keto-hydroxyglutarate 23.5 3.4E+02 0.0075 27.8 7.9 78 484-561 8-102 (201)
388 COG2390 DeoR Transcriptional r 23.4 5.5E+02 0.012 28.2 9.9 93 445-538 105-223 (321)
389 cd04187 DPM1_like_bac Bacteria 23.2 3.3E+02 0.0071 25.6 7.4 55 457-511 2-60 (181)
390 TIGR01279 DPOR_bchN light-inde 23.1 1.1E+03 0.023 26.4 13.3 60 495-563 168-228 (407)
391 cd01748 GATase1_IGP_Synthase T 23.1 2.1E+02 0.0047 28.2 6.3 70 496-568 13-83 (198)
392 PRK08287 cobalt-precorrin-6Y C 23.1 4.6E+02 0.0099 25.5 8.6 74 452-529 29-104 (187)
393 PRK07671 cystathionine beta-ly 23.0 1E+03 0.022 26.1 12.5 90 459-561 69-169 (377)
394 TIGR00215 lpxB lipid-A-disacch 23.0 9.9E+02 0.022 26.2 12.1 43 505-563 251-293 (385)
395 PRK09191 two-component respons 23.0 6.9E+02 0.015 24.9 10.1 92 466-564 120-218 (261)
396 cd00610 OAT_like Acetyl ornith 22.9 9.4E+02 0.02 25.9 11.8 30 532-561 199-230 (413)
397 TIGR02463 MPGP_rel mannosyl-3- 22.9 94 0.002 30.8 3.8 44 467-515 21-65 (221)
398 PRK05690 molybdopterin biosynt 22.7 8.7E+02 0.019 25.2 12.0 109 444-562 22-153 (245)
399 PF02550 AcetylCoA_hydro: Acet 22.7 3.8E+02 0.0083 26.8 8.1 109 445-554 12-156 (198)
400 PRK14571 D-alanyl-alanine synt 22.7 1.8E+02 0.0038 30.7 5.9 42 493-534 20-65 (299)
401 PRK05441 murQ N-acetylmuramic 22.7 9.8E+02 0.021 25.7 14.3 54 495-550 148-204 (299)
402 PRK09148 aminotransferase; Val 22.7 3.9E+02 0.0084 29.4 8.8 97 456-560 94-202 (405)
403 PRK12325 prolyl-tRNA synthetas 22.6 1.6E+02 0.0034 33.4 5.9 71 454-524 305-395 (439)
404 KOG1430 C-3 sterol dehydrogena 22.6 5.4E+02 0.012 28.8 9.8 111 455-568 4-129 (361)
405 PRK07811 cystathionine gamma-s 22.4 7.5E+02 0.016 27.3 11.0 97 458-562 80-182 (388)
406 cd01967 Nitrogenase_MoFe_alpha 22.3 1.1E+03 0.023 26.0 12.8 91 454-563 285-380 (406)
407 PRK04663 murD UDP-N-acetylmura 22.2 5E+02 0.011 29.0 9.7 90 456-561 8-97 (438)
408 TIGR03542 DAPAT_plant LL-diami 22.2 3E+02 0.0066 30.1 7.9 101 452-560 93-210 (402)
409 TIGR01426 MGT glycosyltransfer 22.1 2.3E+02 0.005 30.7 6.8 32 529-566 92-123 (392)
410 PRK06111 acetyl-CoA carboxylas 22.1 1.6E+02 0.0034 32.8 5.7 32 456-489 3-34 (450)
411 PRK12743 oxidoreductase; Provi 22.1 3.6E+02 0.0078 27.1 7.9 74 455-530 2-88 (256)
412 PRK05557 fabG 3-ketoacyl-(acyl 22.0 6E+02 0.013 24.7 9.3 75 455-531 5-92 (248)
413 PRK05942 aspartate aminotransf 22.0 4.9E+02 0.011 28.3 9.4 91 456-560 99-207 (394)
414 PRK13143 hisH imidazole glycer 22.0 3.5E+02 0.0076 27.0 7.7 83 482-570 2-85 (200)
415 TIGR03540 DapC_direct LL-diami 21.9 7.5E+02 0.016 26.6 10.8 96 455-560 92-201 (383)
416 cd04179 DPM_DPG-synthase_like 21.9 2.8E+02 0.0062 25.7 6.7 48 457-504 2-52 (185)
417 PRK09135 pteridine reductase; 21.9 2.2E+02 0.0048 27.9 6.2 97 454-553 5-128 (249)
418 PRK03803 murD UDP-N-acetylmura 21.9 5.4E+02 0.012 28.7 9.9 91 453-560 4-96 (448)
419 PRK12653 fructose-6-phosphate 21.8 4.5E+02 0.0098 27.2 8.5 66 465-536 63-131 (220)
420 PLN02896 cinnamyl-alcohol dehy 21.7 7.8E+02 0.017 26.2 10.7 108 454-565 9-138 (353)
421 PRK09136 5'-methylthioadenosin 21.7 3.8E+02 0.0082 28.1 8.0 75 458-564 126-204 (245)
422 PRK00885 phosphoribosylamine-- 21.7 2.1E+02 0.0045 31.8 6.5 70 457-533 2-73 (420)
423 COG0626 MetC Cystathionine bet 21.6 1E+03 0.022 27.0 11.8 105 451-564 74-185 (396)
424 COG0424 Maf Nucleotide-binding 21.6 2.7E+02 0.0058 28.5 6.6 71 469-550 16-91 (193)
425 PRK07049 methionine gamma-lyas 21.6 7.8E+02 0.017 27.6 11.1 55 455-513 99-155 (427)
426 PRK10463 hydrogenase nickel in 21.5 9.7E+02 0.021 26.0 11.2 71 438-513 85-162 (290)
427 PRK14852 hypothetical protein; 21.5 9.1E+02 0.02 30.7 12.2 130 426-564 304-457 (989)
428 cd00381 IMPDH IMPDH: The catal 21.5 6.8E+02 0.015 27.3 10.2 48 460-511 115-162 (325)
429 cd04252 AAK_NAGK-fArgBP AAK_NA 21.4 5.7E+02 0.012 26.5 9.3 105 456-564 30-172 (248)
430 PRK00451 glycine dehydrogenase 21.3 1.1E+03 0.025 26.0 13.0 99 456-562 131-239 (447)
431 PRK05597 molybdopterin biosynt 21.2 8.9E+02 0.019 26.6 11.2 110 444-563 18-150 (355)
432 PF00185 OTCace: Aspartate/orn 21.2 3.4E+02 0.0074 26.3 7.2 73 454-528 1-79 (158)
433 PRK11175 universal stress prot 21.2 6.9E+02 0.015 25.8 10.0 61 501-564 78-146 (305)
434 PRK10892 D-arabinose 5-phospha 21.1 1E+03 0.022 25.3 13.5 36 495-530 111-146 (326)
435 PTZ00075 Adenosylhomocysteinas 21.1 8.2E+02 0.018 28.5 11.1 65 452-528 251-315 (476)
436 TIGR00514 accC acetyl-CoA carb 21.1 1.3E+02 0.0029 33.7 4.9 30 457-488 4-33 (449)
437 PRK08644 thiamine biosynthesis 21.1 8.8E+02 0.019 24.6 10.8 111 443-564 17-151 (212)
438 cd01492 Aos1_SUMO Ubiquitin ac 21.0 8.5E+02 0.018 24.4 10.5 109 444-563 11-142 (197)
439 PRK02842 light-independent pro 20.9 5.4E+02 0.012 29.0 9.6 59 495-563 181-240 (427)
440 PRK14362 Maf-like protein; Pro 20.9 5.2E+02 0.011 26.5 8.7 75 477-561 30-113 (207)
441 CHL00162 thiG thiamin biosynth 20.9 1.1E+02 0.0023 32.8 3.8 92 448-545 130-226 (267)
442 PRK00090 bioD dithiobiotin syn 20.9 85 0.0018 31.4 3.0 19 547-565 183-201 (222)
443 PF04321 RmlD_sub_bind: RmlD s 20.9 1.1E+02 0.0023 32.3 3.9 97 457-571 2-108 (286)
444 TIGR03589 PseB UDP-N-acetylglu 20.9 5.7E+02 0.012 27.1 9.4 109 454-565 3-125 (324)
445 PRK07454 short chain dehydroge 20.8 8.1E+02 0.017 24.1 10.0 74 454-530 5-91 (241)
446 TIGR01181 dTDP_gluc_dehyt dTDP 20.8 3.8E+02 0.0083 27.3 7.9 107 458-564 2-125 (317)
447 PRK12828 short chain dehydroge 20.8 5.4E+02 0.012 25.0 8.6 109 454-565 6-141 (239)
448 PRK01372 ddl D-alanine--D-alan 20.8 2.9E+02 0.0063 28.8 7.1 39 493-531 24-65 (304)
449 PRK05664 threonine-phosphate d 20.7 8.5E+02 0.018 25.8 10.7 102 455-566 65-166 (330)
450 PRK13399 fructose-1,6-bisphosp 20.7 3.3E+02 0.0072 30.3 7.7 104 454-560 16-140 (347)
451 PRK02090 phosphoadenosine phos 20.7 5.7E+02 0.012 26.3 9.1 66 444-513 31-101 (241)
452 PRK13181 hisH imidazole glycer 20.6 1.4E+02 0.003 29.7 4.4 71 495-568 13-84 (199)
453 PRK06290 aspartate aminotransf 20.6 6.8E+02 0.015 27.8 10.2 55 452-512 103-158 (410)
454 cd01485 E1-1_like Ubiquitin ac 20.5 8.6E+02 0.019 24.3 10.9 109 444-563 9-145 (198)
455 TIGR01139 cysK cysteine syntha 20.5 1.7E+02 0.0037 30.9 5.3 58 452-513 54-111 (298)
456 TIGR01265 tyr_nico_aTase tyros 20.5 5.7E+02 0.012 27.9 9.6 94 454-561 96-207 (403)
457 TIGR01694 MTAP 5'-deoxy-5'-met 20.4 4.6E+02 0.01 27.0 8.4 22 543-564 181-202 (241)
458 KOG3349 Predicted glycosyltran 20.4 1.7E+02 0.0037 29.2 4.8 53 450-506 76-128 (170)
459 PRK07682 hypothetical protein; 20.4 7.2E+02 0.016 26.7 10.2 51 455-511 82-132 (378)
460 PRK00421 murC UDP-N-acetylmura 20.4 4.4E+02 0.0096 29.6 8.9 92 454-564 6-98 (461)
461 PRK00414 gmhA phosphoheptose i 20.4 3.6E+02 0.0079 26.9 7.3 37 522-565 111-147 (192)
462 PRK07269 cystathionine gamma-s 20.3 8.2E+02 0.018 26.8 10.7 97 456-561 71-171 (364)
463 KOG0822 Protein kinase inhibit 20.3 7.6E+02 0.016 29.4 10.5 77 440-518 348-433 (649)
464 PRK06719 precorrin-2 dehydroge 20.3 3.7E+02 0.0079 26.1 7.1 90 454-563 12-101 (157)
465 PRK00141 murD UDP-N-acetylmura 20.2 6.6E+02 0.014 28.6 10.2 91 454-562 14-104 (473)
466 PRK14058 acetylglutamate/acety 20.2 5.4E+02 0.012 27.0 8.9 46 516-561 142-187 (268)
467 PRK11840 bifunctional sulfur c 20.2 1.6E+02 0.0034 32.5 5.0 90 445-540 187-282 (326)
468 PLN02512 acetylglutamate kinas 20.1 6.4E+02 0.014 27.2 9.6 105 456-562 81-225 (309)
469 PRK05452 anaerobic nitric oxid 20.0 1.4E+03 0.029 26.4 14.5 99 466-567 238-347 (479)
No 1
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-109 Score=885.90 Aligned_cols=536 Identities=52% Similarity=0.807 Sum_probs=441.3
Q ss_pred CCCCCCCcccccCCCC-CCCCCCCCCCC---CCCCCCCCCCCCCCccccccCCCCCCccccCCCCCcchhhhhhhccCCC
Q 006256 48 SSPGNFLSPVMIPPPR-HPSSSLLPRLP---HSPSDAFPPPSPTTTTTTTSLGDFSDDVTAASSPPSAAAAAARVRGRGS 123 (653)
Q Consensus 48 ~~~~~~~~~v~~p~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (653)
++.+|+++|+|||++| |.+|.+...+- ..+.....+..+ . +.+. ++...++..+. .
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~kk~~k~~~~ep~~~-~-------~~~~--~p~~~t~s~~~-~--------- 74 (556)
T KOG1467|consen 15 DKLKELPEPANNPVARLGTIDQVKSERNAKKVAKQAAKEPAQG-E-------DKNA--EPKDLTASAKQ-A--------- 74 (556)
T ss_pred chhhhccccccCccccccchHHHHHHHHHhhcCccccccccCC-C-------cccc--Ccccccccccc-c---------
Confidence 4899999999999999 88888876441 001111111110 0 1111 11111111111 1
Q ss_pred cccccccccCCCCCCCCCCCCcCCCCCCCCCCCeeeeeecCCCCCcCCCCCCcceeeccccccCCCcchhhccHHHHHHH
Q 006256 124 SVKQQGAASSFPGGGFEVPPSVKAPSSVPASGLTTVSVVKLPPGISENAGGSVSVEVQSDRALNSKPLKEKTSKAERRAI 203 (653)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kAERRa~ 203 (653)
...+..++|+||+|++...+++ .+ .++..+.+....+..+..+.+.|+||||++
T Consensus 75 ---~~~~~~s~~~~~~e~t~a~~a~---~~--------------------a~~s~~~~p~~~~~~ka~~~~~t~a~~~a~ 128 (556)
T KOG1467|consen 75 ---RVAVKASLPKGGAELTVANKAA---AA--------------------AGSSATQSPKKEKPPKAGLAVPTRAERKAI 128 (556)
T ss_pred ---ccchhhcccCCcceecccccch---hh--------------------hccccccCCcccCCcccccccccHHHHhhH
Confidence 1456789999999999773222 11 111223333444556778889999999999
Q ss_pred HHHHHHHHHHHhhcCCCCcchhhcccCCCCCCCCCCC-CCCCCCcccccccccCCCCcccccccCCCCCCCcccCcHHHH
Q 006256 204 QEAQRAAKAAAKAEGIKTPAATALANAKPTKSTRPSP-QRNDSPVVVAASEKKGGDRSVEKDRKKDVPHPRMQYDDKSRV 282 (653)
Q Consensus 204 QEaqRAaKaa~k~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~dd~~~~ 282 (653)
||++||+|+|+|++++..........+.+..+...|. .|+..+ ...+..-+. ++.++++|.+|+++..+.
T Consensus 129 ~Ea~~a~K~a~kg~~~~~a~~~~~~kA~~s~a~~~P~~~k~~~p------~~t~~~~~~---~~~~~~~pq~q~kt~~~~ 199 (556)
T KOG1467|consen 129 QEAKRAAKTAEKGEGARKAQVIERAKANASTAPAIPAVKKNALP------VTTSVDQAL---KRRAVQNPQNQAKTLASA 199 (556)
T ss_pred HHHHHHHHHhhhcccccccccccccccCcccccCCCcccccccc------ccccccchH---Hhhcccchhhhhhhhccc
Confidence 9999999999999986421111111111111111122 222211 111111111 577889999999887765
Q ss_pred HHhhhccccccccccCcccccccCCcceecccCcchhhhhhcccchhHHHHHHHHhhhcCcccchHHHHHHHHHHHHHHH
Q 006256 283 QKLKKRSVVKPTEARNRVELFRHLPQYEHGTQLPVLQSKFFQLDTLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAI 362 (653)
Q Consensus 283 ~k~~~~~~~~~~~~~~~v~lf~hLP~~~~~~~~~~~~~~~~ai~~mhPAI~~LGl~~~~~~i~Gsnaraiaml~a~~~vI 362 (653)
. +.|+.|+.+ ++.||+||||+.+.. ..|..+..|||||++||+||+.|+|+|+|+|||+||.+|+++|
T Consensus 200 ~-~~rk~V~~~-----~v~lf~hL~q~~~~t------t~f~~~~~IHPAv~~Lglq~a~~kI~GsnaRCIa~L~afqevi 267 (556)
T KOG1467|consen 200 S-ASRKAVASQ-----KVSLFTHLPQYDRAT------TQFIFLDSIHPAVLRLGLQYALGKISGSNARCIAMLQAFQEVI 267 (556)
T ss_pred C-ccccccccc-----eehhhhhhhHhhccc------ccccccccccHHHHHHHHHHhhcccCCccHHHHHHHHHHHHHH
Confidence 5 777777755 899999999999875 2355666799999999999999999999999999999999999
Q ss_pred HhcCCCCccchHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006256 363 RDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADR 442 (653)
Q Consensus 363 ~dy~~p~~~~~~rdL~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~~~~~~~~~~eaK~~L~e~I~~fi~E~i~~a~~ 442 (653)
+||++|++++|.|||+.+|+.++.||.+|||++++|||||||||+.|..++.+..+.|+|+.|++.|+.||+|+|..|++
T Consensus 268 ~Dy~TP~~ktlsrdLt~~i~~qv~~L~~cRPLs~SmgNAiRflK~eI~~L~~s~~e~eaKe~L~~~I~~~i~eki~~A~q 347 (556)
T KOG1467|consen 268 KDYTTPPEKTLSRDLTAAISPQVSFLTQCRPLSISMGNAIRFLKNEISKLPISLSESEAKEELQSDIDRFIAEKIILADQ 347 (556)
T ss_pred HhccCCCccccchhhHhhhhhHHHHHhhcCCccchhhHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhh
Q 006256 443 VIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHE 522 (653)
Q Consensus 443 ~Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~ 522 (653)
.|++++.++|+|||+|||||+|++|+.+|.+||+.|++|+|+|+||||.+||++|++.|.+.||+|||+++++++|+|.+
T Consensus 348 aI~q~a~~KI~dgdviltyg~s~vV~~ill~A~~~~k~frVvVVDSRP~~EG~~~lr~Lv~~GinctYv~I~a~syim~e 427 (556)
T KOG1467|consen 348 AISQHAVTKIQDGDVLLTYGSSSVVNMILLEAKELGKKFRVVVVDSRPNLEGRKLLRRLVDRGINCTYVLINAASYIMLE 427 (556)
T ss_pred HHHHHHHHHhhcCCEEEEecchHHHHHHHHHHHHhCcceEEEEEeCCCCcchHHHHHHHHHcCCCeEEEEehhHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeeccccccccccccCcccccccCCcccccccCCCcccccCCC
Q 006256 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGDPDSISKVPGREDINHLDG 602 (653)
Q Consensus 523 Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~~~ds~~~nElrdp~ev~~~~g~~~~~~l~~ 602 (653)
|++|||||++|++||.||+|+||+++||+|++|||||+||||+|||++|+|+|++++||++||+++..++|+.+...|.+
T Consensus 428 vtkvfLGahailsNG~vysR~GTa~valvAna~nVPVlVCCE~yKF~eRvQlDsi~~NEL~dpn~l~~v~g~~~~~~L~~ 507 (556)
T KOG1467|consen 428 VTKVFLGAHAILSNGAVYSRVGTACVALVANAFNVPVLVCCEAYKFHERVQLDSIVSNELGDPNALQEVRGREDKVALAG 507 (556)
T ss_pred cceeeechhhhhcCcchhhhcchHHHHHHhcccCCCEEEEechhhhhhhhhhhhhhhcccCChhhhhhccCcchhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999767778999
Q ss_pred ccCCCCcccccccccccCCCCccEEEeCCCCCCCCCHHHHHHHhhcCC
Q 006256 603 WDKSENLQLLNLIYDATPSDYVSLIITDYGMIPPTSVPVIVREYGRGQ 650 (653)
Q Consensus 603 ~~~~~~l~v~Np~FDvTPpeLIt~IITE~Gvi~PssV~~ilrey~~~~ 650 (653)
|....+++++|++||+||||||++||||+|++||++||+|||+|...+
T Consensus 508 wqn~~~L~~lnl~YD~TPpelIs~vVTe~g~lp~TSVPvilr~~~~~~ 555 (556)
T KOG1467|consen 508 WQNNANLKFLNLMYDVTPPELISAVVTELGMLPPTSVPVILREKKLTD 555 (556)
T ss_pred cccccccchhheeeccCcHHHHHHHHhhccccCCccchHHHhhhhccc
Confidence 999999999999999999999999999999999999999999998765
No 2
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=100.00 E-value=1.3e-69 Score=570.46 Aligned_cols=304 Identities=28% Similarity=0.465 Sum_probs=284.5
Q ss_pred chhHHHHHHHHhhhcCcccchHHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHH
Q 006256 327 TLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLK 406 (653)
Q Consensus 327 ~mhPAI~~LGl~~~~~~i~Gsnaraiaml~a~~~vI~dy~~p~~~~~~rdL~~~L~~~i~~L~~aRPtsVsmgNAIr~lk 406 (653)
.|||.+.+++.++.+++++|+.+.|++++.+|..+++++.++ ...+|++.|+..+++|.+|||++++|+|++|+++
T Consensus 2 ~~~~~v~~~~~~i~~~~v~Ga~~i~~~a~~~l~~~~~~~~~~----~~~~l~~~l~~~~~~L~~arPt~v~l~nair~v~ 77 (310)
T PRK08535 2 EVMPEVLETAEKIKTMEIRGAGRIARAAAEALKDQAEKSDAE----SPEEFKAEMRAAANILISTRPTAVSLPNAVRYVM 77 (310)
T ss_pred CCchhHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 489999999999999999999999999999999999988664 3467888999999999999999999999999999
Q ss_pred HHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEe
Q 006256 407 SQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIV 486 (653)
Q Consensus 407 ~~I~~~~~~~~~~eaK~~L~e~I~~fi~E~i~~a~~~Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ 486 (653)
+... ..+.+++|+.+++.+++|+++ +..+++.|+++|.++|.+|++|||||||++|+++|+.|+++|++|+|||+
T Consensus 78 ~~~~----~~~~~~~k~~l~e~~~~~~~e-~~~~~~~I~~~a~~~i~~g~~ILT~~~S~tv~~~l~~A~~~~k~~~V~v~ 152 (310)
T PRK08535 78 RYYS----GETVEEARESVIERAEEFIES-SENAVEKIGEIGAKRIRDGDVIMTHCNSSAALSVIKTAHEQGKDIEVIAT 152 (310)
T ss_pred Hhhc----cCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCCEEEEeCCcHHHHHHHHHHHHCCCeEEEEEe
Confidence 7632 346789999999999999987 78899999999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeecccc
Q 006256 487 DSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (653)
Q Consensus 487 ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~aety 566 (653)
||||++||+.|+++|.+.||+||||+|++++|+|++||+||+|||+|++||+++||+|||++|++||+|+||||||||+|
T Consensus 153 EsrP~~~G~~~a~~L~~~GI~vtlI~Dsav~~~m~~vd~VivGAd~v~~nG~v~nkiGT~~~A~~Ak~~~vPv~V~a~~~ 232 (310)
T PRK08535 153 ETRPRNQGHITAKELAEYGIPVTLIVDSAVRYFMKDVDKVVVGADAITANGAVINKIGTSQIALAAHEARVPFMVAAETY 232 (310)
T ss_pred cCCchhhHHHHHHHHHHCCCCEEEEehhHHHHHHHhCCEEEECccEEecCCCEEeHHhHHHHHHHHHHhCCCEEEecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCcccccccCCcccccccCCCcccccCCCccCCCCcccccccccccCCCCccEEEeCCCCCCCCCHHHHHHHh
Q 006256 567 KFHERVQLDSICSNELGDPDSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMIPPTSVPVIVREY 646 (653)
Q Consensus 567 Kf~~~~~~ds~~~nElrdp~ev~~~~g~~~~~~l~~~~~~~~l~v~Np~FDvTPpeLIt~IITE~Gvi~PssV~~ilrey 646 (653)
||++.+++|..+.+|++|+.|++.... ....++++++||+||+|||+|||+||||.|+++|++++.++++|
T Consensus 233 K~~~~~~~~~~~~ie~~~~~ev~~~~~---------~~~~~~v~v~np~fD~tP~~lIt~iiTe~Gi~~ps~v~~~~~~~ 303 (310)
T PRK08535 233 KFSPKTLLGELVEIEERDPTEVLPEEI---------LAKLPGVKVRNPAFDVTPPEYIDAIITEIGAIPPEMAYTIIKEY 303 (310)
T ss_pred eecCCCCCCCcceecccCHHHhccccc---------ccCCCCceeeccCcccCCHHHCCEEEeCCCcCChHHHHHHHHHH
Confidence 999999999999999999999875411 12456899999999999999999999999999999999999999
Q ss_pred hc
Q 006256 647 GR 648 (653)
Q Consensus 647 ~~ 648 (653)
|.
T Consensus 304 ~~ 305 (310)
T PRK08535 304 LG 305 (310)
T ss_pred hC
Confidence 86
No 3
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=100.00 E-value=1.7e-69 Score=575.14 Aligned_cols=316 Identities=23% Similarity=0.342 Sum_probs=282.8
Q ss_pred cCccccc--ccCCcceecccCcchhhhhhcccch----hHHHHHHHHhhhcCcccchHHHHHHHHHHHHHHHHhcCCCCc
Q 006256 297 RNRVELF--RHLPQYEHGTQLPVLQSKFFQLDTL----HPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPA 370 (653)
Q Consensus 297 ~~~v~lf--~hLP~~~~~~~~~~~~~~~~ai~~m----hPAI~~LGl~~~~~~i~Gsnaraiaml~a~~~vI~dy~~p~~ 370 (653)
.+.|.|| +.||+++.|+.|.++++++.+|++| +|+| +.+++++|.+++++ +...
T Consensus 10 ~~~l~~ldq~~lP~~~~~~~~~~~~~v~~aI~~m~vrGApai--------------g~aaa~~lal~~~~----~~~~-- 69 (344)
T PRK05720 10 DGAVRILDQRKLPHEVEYVELTTAEEVADAIRDMVVRGAPAI--------------GIAAAYGMALAARE----DASD-- 69 (344)
T ss_pred CCEEEEEecCCCCCeeEEEEeCCHHHHHHHHHhCeecCCcHH--------------HHHHHHHHHHHHhh----ccCC--
Confidence 4579999 9999999999999999999999999 6999 55778888777654 2111
Q ss_pred cchHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006256 371 KTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVT 450 (653)
Q Consensus 371 ~~~~rdL~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~~~~~~~~~~eaK~~L~e~I~~fi~E~i~~a~~~Ia~~a~~ 450 (653)
...++...|+.++++|.+||||++||+|+++++++.+... +.+++++.+++.+++|++|. ..+++.|+++|++
T Consensus 70 --~~~~~~~~l~~~~~~L~~~RPtavnL~~ai~~~~~~i~~~----~~~~~~~~l~~~a~~~~~e~-~~~~~~I~~~g~~ 142 (344)
T PRK05720 70 --DGEEFLKKLEEAAAYLAASRPTAVNLFWALDRMREVLAPL----PGAERKAALEEEAIEIHEED-VEINRAIGEHGLT 142 (344)
T ss_pred --CHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 2467888899999999999999999999999999887542 47889999999999999995 5689999999999
Q ss_pred hccCCCEEEEeCChH--------HHHHHHHHHHHcCCeeEEEEeCCCCCchHHHH-HHHHHhCCCCEEEEccchHHHHhh
Q 006256 451 KIRDGDVLLTYGSSS--------AVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-LRRLVRKGLSCTYTHINAISYIIH 521 (653)
Q Consensus 451 ~I~dGdvILT~g~Ss--------~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~L-a~eL~~~GI~vT~I~DsAv~~iM~ 521 (653)
+|++|++|||||||. ++.++|+.|+++|++|+|||+||||++||.+| +++|.+.||+||||+|+|++|+|+
T Consensus 143 ~I~~g~~ILThc~sg~lat~~~gTal~~i~~A~~~gk~~~V~v~EsRP~~qG~~lta~eL~~~GI~vtlI~Dsa~~~~M~ 222 (344)
T PRK05720 143 LIRKGQGILTHCNAGWLATAGYGTALAPIYAAKEKGIDIHVYADETRPRLQGARLTAWELYQAGIDVTVITDNMAAHLMQ 222 (344)
T ss_pred HccCCCEEEEecCCCcceecchhHHHHHHHHHHHcCCceEEEEcCCCChhhhHHHHHHHHHHCCCCEEEEcccHHHHHhc
Confidence 999999999999985 34579999999999999999999999999977 699999999999999999999998
Q ss_pred --hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeeccccccccccccCcccccccCCcccccccCCCccccc
Q 006256 522 --EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGDPDSISKVPGREDINH 599 (653)
Q Consensus 522 --~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~~~ds~~~nElrdp~ev~~~~g~~~~~~ 599 (653)
+||+||+|||+|++||+++||+|||++|++||+|+||||||||+|||+++++.|..+.+|+|||+|+..++|..
T Consensus 223 ~~~vd~VivGAd~I~~nG~v~NkiGT~~lAl~Ak~~~vPfyV~a~~~kfd~~~~~g~~i~iE~r~~~ev~~~~~~~---- 298 (344)
T PRK05720 223 TGKIDAVIVGADRIAANGDVANKIGTYQLAIAAKYHGVPFYVAAPSSTIDLTLADGKEIPIEERDPEEVTEVGGVR---- 298 (344)
T ss_pred ccCCCEEEEcccEEecCCCEeehhhHHHHHHHHHHhCCCEEEeccccccCcCCCCCcccccccCCHHHhcccCCcc----
Confidence 59999999999999999999999999999999999999999999999999999888899999999998765532
Q ss_pred CCCccCCCCcccccccccccCCCCccEEEeCCCCCCCCCHHHHHHHhhc
Q 006256 600 LDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMIPPTSVPVIVREYGR 648 (653)
Q Consensus 600 l~~~~~~~~l~v~Np~FDvTPpeLIt~IITE~Gvi~PssV~~ilrey~~ 648 (653)
..+++++++||+||+||++|||+||||.|+++|+++..+ ++|+.
T Consensus 299 ----~~~~~v~v~Np~FDvTP~~lIt~iITE~Gv~~p~~~~~~-~~~~~ 342 (344)
T PRK05720 299 ----IAPEGVKVYNPAFDVTPAELITGIITEKGIVAPPDTANL-AALFP 342 (344)
T ss_pred ----cCCCCceeecccccCCCHHHCCEEEcCCCccCccHHHHH-HHHhc
Confidence 346789999999999999999999999999999988755 55543
No 4
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=100.00 E-value=1.9e-69 Score=571.58 Aligned_cols=303 Identities=22% Similarity=0.369 Sum_probs=277.9
Q ss_pred Cccccc--ccCCcceecccCcchhhhhhcccch----hHHHHHHHHhhhcCcccchHHHHHHHHHHHHHHHHhcCCCCcc
Q 006256 298 NRVELF--RHLPQYEHGTQLPVLQSKFFQLDTL----HPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAK 371 (653)
Q Consensus 298 ~~v~lf--~hLP~~~~~~~~~~~~~~~~ai~~m----hPAI~~LGl~~~~~~i~Gsnaraiaml~a~~~vI~dy~~p~~~ 371 (653)
++|.|| +.||++.+|+.|.++++++.+|++| +|+| |.++|++|++++.+. .
T Consensus 8 ~~l~~ldq~~lP~~~~~~~~~~~~~~~~aI~~m~vRGApai--------------g~~aa~~~~l~~~~~----~----- 64 (331)
T TIGR00512 8 GSLELLDQRLLPHESEYIEVTTVEDVADAIRDMRVRGAPAI--------------GIVAAYGLALAAREA----D----- 64 (331)
T ss_pred CEEEEEecCCCCCeeEEEEeCCHHHHHHHHHhCcccCchHH--------------HHHHHHHHHHHHhhc----C-----
Confidence 468899 9999999999999999999999999 6999 558899998887663 1
Q ss_pred chHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006256 372 TLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTK 451 (653)
Q Consensus 372 ~~~rdL~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~~~~~~~~~~eaK~~L~e~I~~fi~E~i~~a~~~Ia~~a~~~ 451 (653)
...++...|+.++++|.+||||++||+||++++++.+..+ .+.+++|+.+++.+++|++| +..+++.|+++|+++
T Consensus 65 -~~~~~~~~l~~~~~~L~~~RPtavnL~~A~~~~~~~i~~~---~~~~~~k~~l~e~a~~~~~e-~~~~~~~I~~~g~~~ 139 (331)
T TIGR00512 65 -EREEFKALLEEKLQYLVSSRPTAVNLSWALDRMRAALEAA---KTVADIKEALLAEAERILEE-DLEDNRAIGENGAAL 139 (331)
T ss_pred -CHHHHHHHHHHHHHHHHHhCCcHhhHHHHHHHHHHHHhcc---CCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 2467888899999999999999999999999999888753 46789999999999999988 567999999999999
Q ss_pred ccCCC----EEEEeCChH--------HHHHHHHHHHHcCCeeEEEEeCCCCCchHHHH-HHHHHhCCCCEEEEccchHHH
Q 006256 452 IRDGD----VLLTYGSSS--------AVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-LRRLVRKGLSCTYTHINAISY 518 (653)
Q Consensus 452 I~dGd----vILT~g~Ss--------~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~L-a~eL~~~GI~vT~I~DsAv~~ 518 (653)
|++|+ +|||||||. ++.++|+.||++|++|+|||+||||++||.+| +++|.+.||+||||+|++++|
T Consensus 140 I~dg~~~~~~ILThcnsg~lat~~~gtal~~l~~A~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsav~~ 219 (331)
T TIGR00512 140 IKKGVAAPLRVLTHCNTGSLATAGYGTALGVIRSAHEKGRLEHVYADETRPRLQGARLTAWELVQEGIPATLITDSMAAH 219 (331)
T ss_pred hcCCCCCCceEEeecCCccccccccchHHHHHHHHHHcCCceEEEECCCCchhhHHHHHHHHHHHCCCCEEEEcccHHHH
Confidence 99999 999999863 67799999999999999999999999999977 699999999999999999999
Q ss_pred Hhh--hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeeccccccccccccCcccccccCCcccccccCCCcc
Q 006256 519 IIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGDPDSISKVPGRED 596 (653)
Q Consensus 519 iM~--~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~~~ds~~~nElrdp~ev~~~~g~~~ 596 (653)
+|+ +||+||+|||+|++||+++||+|||++|++||+|+||||||||+|||++.++.+..+.+|+|||+|+..+.|.
T Consensus 220 ~m~~~~vd~VivGAd~v~~nG~v~nkiGT~~lA~~Ak~~~vPfyV~a~~~kfd~~~~~~~~i~iE~r~p~ev~~~~g~-- 297 (331)
T TIGR00512 220 LMKHGEVDAVIVGADRIAANGDTANKIGTYQLAVLAKHHGVPFYVAAPTSTIDLETKDGAEIPIEERPPEEVTHVGGV-- 297 (331)
T ss_pred HhcccCCCEEEEcccEEecCCCEeehhhHHHHHHHHHHhCCCEEEeccccccccCCCCccccccccCCHHHhcccCCc--
Confidence 999 8999999999999999999999999999999999999999999999999998888889999999999866542
Q ss_pred cccCCCccCCCCcccccccccccCCCCccEEEeCCCCCCC
Q 006256 597 INHLDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMIPP 636 (653)
Q Consensus 597 ~~~l~~~~~~~~l~v~Np~FDvTPpeLIt~IITE~Gvi~P 636 (653)
+..+++++++||+||+||++|||+||||.|++.|
T Consensus 298 ------~~~~~~~~v~Np~FD~TP~~lIt~iITe~Gv~~p 331 (331)
T TIGR00512 298 ------RIAPPGIDVWNPAFDVTPAELITGIITEKGVITP 331 (331)
T ss_pred ------ccCCCCceeecccccCCCHHHCCEEEccCCccCC
Confidence 2456789999999999999999999999999976
No 5
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=100.00 E-value=8.7e-68 Score=554.62 Aligned_cols=290 Identities=27% Similarity=0.448 Sum_probs=263.8
Q ss_pred cCcccchHHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhcCCCccHHH
Q 006256 341 SGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESE 420 (653)
Q Consensus 341 ~~~i~Gsnaraiaml~a~~~vI~dy~~p~~~~~~rdL~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~~~~~~~~~~e 420 (653)
+++++|+.+.+++.+.+|...+....+ ...++|.+.|+..+++|.+|||++++|+|+++++++.++. .+.++
T Consensus 11 ~~~vrGa~~ia~~aa~~l~~~~~~~~~----~~~~~~~~~l~~~~~~L~~arPt~v~l~nai~~~~~~i~~----~~~~~ 82 (301)
T TIGR00511 11 SMEIRGAGRIARAAAAALMEQAAKAES----ASPEEFRAEMREAANILISTRPTAVSLPNAVRYVLKYMSG----EDVET 82 (301)
T ss_pred hCcccCcHHHHHHHHHHHHHHHHhccc----CCHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHhcc----CCHHH
Confidence 345566666666666777666665433 2457888999999999999999999999999999998843 35788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHH
Q 006256 421 AKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRR 500 (653)
Q Consensus 421 aK~~L~e~I~~fi~E~i~~a~~~Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~e 500 (653)
+|+.+++.+++|++| +..+++.|+++|.++|.+|++|||||+|++|+++|++|+++|++|+|||+||||++||+.|+++
T Consensus 83 ~k~~l~~~~~~~~~e-~~~a~~~I~~~a~~~i~~g~~ILT~~~S~tv~~~l~~a~~~~~~f~V~v~EsrP~~~G~~~a~~ 161 (301)
T TIGR00511 83 LRETVIERADAFINQ-SDKAQERIGEIGAKRIRDGDVVMTHCNSEAALSVIKTAFEQGKDIEVIATETRPRKQGHITAKE 161 (301)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecCCCcchHHHHHHH
Confidence 999999999999977 8899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCEEEEccchHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeeccccccccccccCccccc
Q 006256 501 LVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSN 580 (653)
Q Consensus 501 L~~~GI~vT~I~DsAv~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~~~ds~~~n 580 (653)
|.+.||+||||+|++++|+|++||+||+|||+|++||+++||+|||++|++||+|+||||||||+|||++.++.|..+.+
T Consensus 162 L~~~gI~vtlI~Dsa~~~~m~~vd~VivGad~v~~nG~v~nkiGT~~lA~~Ak~~~vPv~V~a~~~K~~~~~~~~~~~~i 241 (301)
T TIGR00511 162 LRDYGIPVTLIVDSAVRYFMKEVDHVVVGADAITANGALINKIGTSQLALAAREARVPFMVAAETYKFHPKTITGELVEI 241 (301)
T ss_pred HHHCCCCEEEEehhHHHHHHHhCCEEEECccEEecCCCEEEHHhHHHHHHHHHHhCCCEEEEcccceecCCCCCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998999
Q ss_pred ccCCcccccccCCCcccccCCCccCCCCcccccccccccCCCCccEEEeCCCCCCCCCHHHHHHHhhc
Q 006256 581 ELGDPDSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMIPPTSVPVIVREYGR 648 (653)
Q Consensus 581 Elrdp~ev~~~~g~~~~~~l~~~~~~~~l~v~Np~FDvTPpeLIt~IITE~Gvi~PssV~~ilrey~~ 648 (653)
|++||+|++...+. ...++++++||+||+|||+|||+||||.|+++|++++.++++||.
T Consensus 242 e~~~~~ev~~~~~~---------~~~~~~~v~np~fD~tP~~lIt~iITe~Gi~~p~~i~~~l~~~~~ 300 (301)
T TIGR00511 242 EERDPTEVLDEEDL---------KQLGAVKVRNPAFDVTPAEYIDAIITEVGQIPPEMAYTIIKELLG 300 (301)
T ss_pred cccCHHHhccccCc---------cCCCCccccCcceecCCHHHCCEEEeCCCcCCcHHHHHHHHHHcC
Confidence 99999998765432 234679999999999999999999999999999999999999987
No 6
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-67 Score=545.59 Aligned_cols=308 Identities=25% Similarity=0.348 Sum_probs=280.0
Q ss_pred ccccc--ccCCcceecccCcchhhhhhcccch----hHHHHHHHHhhhcCcccchHHHHHHHHHHHHHHHHhcCCCCccc
Q 006256 299 RVELF--RHLPQYEHGTQLPVLQSKFFQLDTL----HPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKT 372 (653)
Q Consensus 299 ~v~lf--~hLP~~~~~~~~~~~~~~~~ai~~m----hPAI~~LGl~~~~~~i~Gsnaraiaml~a~~~vI~dy~~p~~~~ 372 (653)
.|.|+ +.||++..|+.|+++++++.+|++| +||| +.+++++|+++.++.-.+ .
T Consensus 13 ~v~llDQr~LP~e~~~v~~~~~~dva~AIk~M~VRGAPAI--------------gv~AayG~alaa~~~~~~-------~ 71 (346)
T COG0182 13 SVKLLDQRLLPFEEKYVECKTYEDVAEAIKDMVVRGAPAI--------------GVAAAYGLALAARESKND-------S 71 (346)
T ss_pred eEEEEecccCCceEEEEEeccHHHHHHHHHhhhccCCcHH--------------HHHHHHHHHHHHHhcccc-------c
Confidence 68888 9999999999999999999999999 6999 569999999998764322 1
Q ss_pred hHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 006256 373 LSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKI 452 (653)
Q Consensus 373 ~~rdL~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~~~~~~~~~~eaK~~L~e~I~~fi~E~i~~a~~~Ia~~a~~~I 452 (653)
..+++...|..+.+.|.++|||++||+||+++|++.+.+.. +.++.++.+.+...+..+| ....|..|+++++++|
T Consensus 72 ~~~e~~~~le~a~~~l~~tRPTAvNLfwal~rm~~~~~~~~---~v~~~~~~~~~eA~~i~~E-D~e~n~~iG~~G~~ll 147 (346)
T COG0182 72 KGEEFIEALEKAAETLKSTRPTAVNLFWALDRMLNAAKEAI---EVKEPKESILQEAEEIAEE-DLEANRAIGENGAELL 147 (346)
T ss_pred chHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHhhcc---chhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhh
Confidence 24688888999999999999999999999999999886543 2577888888777777766 5568999999999999
Q ss_pred cCCCEEEEeCC---------hHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH-HHHHhCCCCEEEEccchHHHHhh-
Q 006256 453 RDGDVLLTYGS---------SSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RRLVRKGLSCTYTHINAISYIIH- 521 (653)
Q Consensus 453 ~dGdvILT~g~---------Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La-~eL~~~GI~vT~I~DsAv~~iM~- 521 (653)
.+|++|||||| ++++ ++++.||++||..+||++||||++||.+|+ |||.+.|||+|+|+|||++|+|+
T Consensus 148 ~~~~~VLThCNaGaLAt~~~GTAl-gviR~a~~~gk~i~v~a~ETRP~lQGARLTawEL~~~GIpvtLItD~aag~~M~~ 226 (346)
T COG0182 148 PDGDTVLTHCNAGALATVGYGTAL-GVIRSAHEEGKDIRVFADETRPYLQGARLTAWELVQDGIPVTLITDNAAGHLMQQ 226 (346)
T ss_pred ccCCeEEeeecCCceeecCccchH-HHHHHHHHCCCeeEEEeCCCccccccceeeHHHHhhcCCceEEEeccHHHHHHHh
Confidence 99999999987 4566 899999999999999999999999999996 99999999999999999999998
Q ss_pred -hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeeccccccccccccCcccccccCCcccccccCCCcccccC
Q 006256 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGDPDSISKVPGREDINHL 600 (653)
Q Consensus 522 -~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~~~ds~~~nElrdp~ev~~~~g~~~~~~l 600 (653)
.||+|++|||+|++||+++||||||++|++||+|||||||++|..+||.....|..+.+|+|||+||..+.|..
T Consensus 227 g~Id~viVGADRI~~nGdvaNKIGTY~lAvlAk~~gIPFyVaAP~sTiD~~~~~G~~I~IEER~p~Ev~~v~g~r----- 301 (346)
T COG0182 227 GMIDAVIVGADRIAANGDVANKIGTYQLAVLAKHHGIPFYVAAPLSTIDFELKSGEDIPIEERDPEEVLEVGGVR----- 301 (346)
T ss_pred CCCcEEEEccceeecCCcchhhhhHHHHHHHHHHcCCCeEEEcccCccccccCCCCccceeecCHHHeEeeccEE-----
Confidence 59999999999999999999999999999999999999999999999999999888999999999999887754
Q ss_pred CCccCCCCcccccccccccCCCCccEEEeCCCCCCCCCHH
Q 006256 601 DGWDKSENLQLLNLIYDATPSDYVSLIITDYGMIPPTSVP 640 (653)
Q Consensus 601 ~~~~~~~~l~v~Np~FDvTPpeLIt~IITE~Gvi~PssV~ 640 (653)
.++++++++||+||+||++|||+||||.|++.|....
T Consensus 302 ---iap~~v~~yNPAFDvTP~~lItgIITEkGv~~p~~~~ 338 (346)
T COG0182 302 ---IAPEGVEAYNPAFDVTPPELITGIITEKGVFTPPFEE 338 (346)
T ss_pred ---eCCCCccccCccccCChHHhcceeeeccceecCchhh
Confidence 5788999999999999999999999999999998443
No 7
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=100.00 E-value=2.8e-67 Score=556.63 Aligned_cols=306 Identities=22% Similarity=0.313 Sum_probs=275.2
Q ss_pred Cccccc--ccCCcceecccCcchhhhhhcccch----hHHHHHHHHhhhcCcccchHHHHHHHHHHHHHHHHhcCCCCcc
Q 006256 298 NRVELF--RHLPQYEHGTQLPVLQSKFFQLDTL----HPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAK 371 (653)
Q Consensus 298 ~~v~lf--~hLP~~~~~~~~~~~~~~~~ai~~m----hPAI~~LGl~~~~~~i~Gsnaraiaml~a~~~vI~dy~~p~~~ 371 (653)
+.|.|| +.||+++.|+.|+++++++.+|++| +|+| |.++|++|+++.++...
T Consensus 11 ~~l~~ldq~~lP~~~~~~~~~~~~~v~~aI~~m~vRGApai--------------g~aaa~g~~l~~~~~~~-------- 68 (339)
T PRK06036 11 NSVKLIDQTLLPEEYKVIECKTLESLCEAIKSLRVRGAPAL--------------GAAGGYGIALAARLSKA-------- 68 (339)
T ss_pred CeEEEEEcCCCCCeEEEEEeCCHHHHHHHHHhCcccCchHH--------------HHHHHHHHHHHHHhccc--------
Confidence 578999 9999999999999999999999999 6999 55889999888865211
Q ss_pred chHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006256 372 TLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTK 451 (653)
Q Consensus 372 ~~~rdL~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~~~~~~~~~~eaK~~L~e~I~~fi~E~i~~a~~~Ia~~a~~~ 451 (653)
...++|...|+..+++|.++|||++||+|+++++++.+.+ ..+.+++++.+.+.+++|++| +..++++|+++|+++
T Consensus 69 ~~~~~~~~~l~~~~~~L~~aRPTavnL~~a~~r~~~~~~~---~~~~~~~~~~~~e~a~~~~~e-~~~~~~~I~~~g~~~ 144 (339)
T PRK06036 69 KDVDELLKDLKVAAETLKSTRPTAVNLSWGVDRVLKAALD---AEDVEEIRDIALREAERIAEE-DVARNKLIGKHGAKL 144 (339)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCcHhhHHHHHHHHHHHhhc---cCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 1246788889999999999999999999999888776543 245788999999999999988 678999999999999
Q ss_pred ccCCCEEEEeCChH--------HHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH-HHHHhCCCCEEEEccchHHHHhhh
Q 006256 452 IRDGDVLLTYGSSS--------AVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RRLVRKGLSCTYTHINAISYIIHE 522 (653)
Q Consensus 452 I~dGdvILT~g~Ss--------~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La-~eL~~~GI~vT~I~DsAv~~iM~~ 522 (653)
|++|++|||||||. ++.++|+.|+++|++|+|||+||||++||.+|+ ++|.+.||+||||+|+|++|+|++
T Consensus 145 I~~g~~ILThc~sg~lat~~~gTal~~l~~A~~~gk~~~V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~M~~ 224 (339)
T PRK06036 145 LEDGDTVLTHCNAGRLACVDWGTALGVIRSAVEQGKEIKVIACETRPLNQGSRLTTWELMQDNIPVTLITDSMAGIVMRQ 224 (339)
T ss_pred ccCCCEEEEecCCccccccccchHHHHHHHHHHcCCceEEEEcCCCchhhHHHHHHHHHHHcCCCEEEEehhHHHHHhcc
Confidence 99999999999984 456899999999999999999999999999985 999999999999999999999987
Q ss_pred --ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeeccccccccccccCcccccccCCcccccccCCCcccccC
Q 006256 523 --VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGDPDSISKVPGREDINHL 600 (653)
Q Consensus 523 --Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~~~ds~~~nElrdp~ev~~~~g~~~~~~l 600 (653)
||+||+|||+|++|| ++||+|||++|++||+|+||||||||++||+.....| .+.+|+|+|+|+..+.|..
T Consensus 225 ~~Vd~VivGAd~I~anG-v~NKiGT~~lA~~Ak~~~vPfyV~ap~s~~d~~~~~g-~i~iE~r~~~Ev~~~~~~~----- 297 (339)
T PRK06036 225 GMVDKVIVGADRITRDA-VFNKIGTYTHSVLAKEHEIPFYVAAPLSTFDFEGWEG-SVKIEERDPDELRYCGKTQ----- 297 (339)
T ss_pred CCCCEEEECccchhhcC-eehhhhHHHHHHHHHHhCCCEEEEeecCccCCCcCCC-CcccccCCHHHhccccCcc-----
Confidence 999999999999997 9999999999999999999999999999999988777 6789999999998765432
Q ss_pred CCccCCCCcccccccccccCCCCccEEEeCCCCCCCCCH
Q 006256 601 DGWDKSENLQLLNLIYDATPSDYVSLIITDYGMIPPTSV 639 (653)
Q Consensus 601 ~~~~~~~~l~v~Np~FDvTPpeLIt~IITE~Gvi~PssV 639 (653)
..+++++++||+||+|||+|||+||||.|++.|++.
T Consensus 298 ---~~~~~v~v~Np~FDvTP~~lIt~iITE~Gv~~P~~~ 333 (339)
T PRK06036 298 ---IAPKDVPVYNPAFDATPMENVTAIITEKGVFYPPFL 333 (339)
T ss_pred ---cCCCCceeeCcccccCCHHHCCEEEccCCcccCCcc
Confidence 346789999999999999999999999999988754
No 8
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=100.00 E-value=7.7e-67 Score=556.34 Aligned_cols=314 Identities=23% Similarity=0.317 Sum_probs=278.2
Q ss_pred cCccccc--ccCCcceecccCcchhhhhhcccch----hHHHHHHHHhhhcCcccchHHHHHHHHHHHHHHHHhcCCCCc
Q 006256 297 RNRVELF--RHLPQYEHGTQLPVLQSKFFQLDTL----HPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPA 370 (653)
Q Consensus 297 ~~~v~lf--~hLP~~~~~~~~~~~~~~~~ai~~m----hPAI~~LGl~~~~~~i~Gsnaraiaml~a~~~vI~dy~~p~~ 370 (653)
.+.|.|| +.||++++|+.|.++++++.+|++| +|+| |.+++++|++++++.-.
T Consensus 23 ~~~l~~lDq~~lP~~~~~~~~~~~~~v~~aI~~M~vRGApai--------------giaAa~glal~~~~~~~------- 81 (363)
T PRK05772 23 DNTLTLLDQSLLPFETVYVDLKTVEEVALAIRNMQVRGAPAI--------------GITAGYGMVLALIENNV------- 81 (363)
T ss_pred CCEEEEEecCCCCCeEEEEEeCCHHHHHHHHHhCcccCCcHH--------------HHHHHHHHHHHHHhccC-------
Confidence 3579999 9999999999999999999999999 6999 55889999888776311
Q ss_pred cchHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhcC---CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006256 371 KTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIP---ISLSESEAKATLHSDIERFINEKIILADRVIVKH 447 (653)
Q Consensus 371 ~~~~rdL~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~~~~---~~~~~~eaK~~L~e~I~~fi~E~i~~a~~~Ia~~ 447 (653)
....++.+.|+..+++|.++|||++||.||++++++.+.... ...+.++.++.+.+.+++|+++. ..++++|+++
T Consensus 82 -~~~~~~~~~l~~~~~~L~~aRPTaVnL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~A~~i~~ed-~~~~~~I~~~ 159 (363)
T PRK05772 82 -KTLDDAIRELTRAKTILDSARPTAVNLVWATSRMLNKAKNTVESGNAKSVNELIELLKVEAKKIFEEE-YDAEIQMGLY 159 (363)
T ss_pred -CCHHHHHHHHHHHHHHHHhcCCcHHhHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 134668888999999999999999999999999998875421 12357889999999999999885 5699999999
Q ss_pred HHHhccCCCEEEEeCChH---------HHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH-HHHHhCCCCEEEEccchHH
Q 006256 448 AVTKIRDGDVLLTYGSSS---------AVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RRLVRKGLSCTYTHINAIS 517 (653)
Q Consensus 448 a~~~I~dGdvILT~g~Ss---------~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La-~eL~~~GI~vT~I~DsAv~ 517 (653)
|+++|.+|++|||||||. ++.++|+.|+++|++|+|||+||||++||.+|+ ++|.+.||+||||+|||++
T Consensus 160 g~~~I~dg~~ILThcnsg~Lat~~g~gtal~~i~~a~~~gk~f~V~v~EsRP~~qG~rlta~eL~~~GIpvtlI~Dsa~~ 239 (363)
T PRK05772 160 GLEKLNDGDTVLTQCNAGGLATGTGLGTALAPVKLAKALGMSVSVIAPETRPWLQGSRLTVYELMEEGIKVTLITDTAVG 239 (363)
T ss_pred HHhhcCCCCEEEEecCCcchhhccccccHHHHHHHHHHCCCeEEEEECCCCccchhHHHHHHHHHHCCCCEEEEehhHHH
Confidence 999999999999999884 346889999999999999999999999999885 9999999999999999999
Q ss_pred HHhh--hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeeccccccccccccCcccccccCCcccccccCCCc
Q 006256 518 YIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGDPDSISKVPGRE 595 (653)
Q Consensus 518 ~iM~--~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~~~ds~~~nElrdp~ev~~~~g~~ 595 (653)
|+|+ +||+||+|||+|++||+++||+|||++|++||+||||||||||+|||+++++.+ .+.+|+|+|+|+..+.|.
T Consensus 240 ~~m~~~~Vd~VivGAD~I~~NG~v~NKiGTy~lA~~Ak~~~vPfyV~ap~~k~d~~~~~~-~i~ieer~p~ev~~~~~~- 317 (363)
T PRK05772 240 LVMYKDMVNNVMVGADRILRDGHVFNKIGTFKEAVIAHELGIPFYALAPTSTFDLKSDVN-DVKIEERDPNEVRTIRGV- 317 (363)
T ss_pred HHHhhcCCCEEEECccEEecCCCEeehhhhHHHHHHHHHhCCCEEEEccccccCcccccc-ccccccCCHHHhcccCCc-
Confidence 9997 499999999999999999999999999999999999999999999999998774 457888999999876542
Q ss_pred ccccCCCccCCCCcccccccccccCCCCccEEEeCCCCCCCCCHHHH
Q 006256 596 DINHLDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMIPPTSVPVI 642 (653)
Q Consensus 596 ~~~~l~~~~~~~~l~v~Np~FDvTPpeLIt~IITE~Gvi~PssV~~i 642 (653)
+..+++++++||+||+||++|||+||||.|++.|++...+
T Consensus 318 -------~~~~~~~~v~Np~FDvTP~~lIt~iITE~Gv~~p~~~~~~ 357 (363)
T PRK05772 318 -------PITPEDVNVYNPVFDVTPPKYITGIITEKGIIYPPFHKNI 357 (363)
T ss_pred -------eecCCCceeeccCccCCCHHHCCEEEccCCccCCchHHHH
Confidence 3457789999999999999999999999999998865544
No 9
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.8e-66 Score=534.51 Aligned_cols=299 Identities=31% Similarity=0.517 Sum_probs=280.9
Q ss_pred hhHHHHHHHHhhhcCcccchHHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHH
Q 006256 328 LHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKS 407 (653)
Q Consensus 328 mhPAI~~LGl~~~~~~i~Gsnaraiaml~a~~~vI~dy~~p~~~~~~rdL~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~ 407 (653)
+||.|..+...+.+++|.|+.++|++++.+|+.++.++.++ ..++|++.|+...+.|.++||+++||+|++|++++
T Consensus 2 ~~~~v~~~~~~lk~~~i~Ga~~ia~~a~eal~~~~~~~~~~----~~~~l~~~i~~~~~~L~~~~P~~~Sl~n~~r~v~~ 77 (301)
T COG1184 2 IMPEVDETAEKLKSMEIRGASWIAIAAAEALEILASDSQAP----TVEELIDAIRELSETLVKARPTAVSLGNLIRFVLR 77 (301)
T ss_pred chHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhccccc----cHHHHHHHHHHHHHHHHhcCCcceeHHHHHHHHHh
Confidence 58999999999999999999999999999999999999886 46889999999999999999999999999999997
Q ss_pred HHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeC
Q 006256 408 QIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVD 487 (653)
Q Consensus 408 ~I~~~~~~~~~~eaK~~L~e~I~~fi~E~i~~a~~~Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~E 487 (653)
.....+.++.++.+.+.+++|+++ ++.+.+.|++.++++|.||++|||||+|++|..+|+.|++.|++|+|||+|
T Consensus 78 ----~~~~~~~~~~~~~~~~~~~~~i~~-~~~a~~~ia~~~a~~i~dg~~IlTh~~S~~v~~~l~~A~~~~k~~~V~VtE 152 (301)
T COG1184 78 ----DSSGGDKENRRQSLIKAAQEFIDR-VEKAKERIAEIGAERIHDGDVILTHSFSKTVLEVLKTAADRGKRFKVIVTE 152 (301)
T ss_pred ----cccccchhhHHHHHHHhHHHHHHH-HHHHHHHHHHHHHhhccCCCEEEEecCcHHHHHHHHHhhhcCCceEEEEEc
Confidence 222345678899999999999977 788999999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeeccccc
Q 006256 488 SRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYK 567 (653)
Q Consensus 488 SRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~aetyK 567 (653)
|||.+||+.|+++|.+.||+|++|+|++++++|.+||+||||||+|++||+++||+||++||++||++++|||||||+||
T Consensus 153 SRP~~eG~~~ak~L~~~gI~~~~I~Dsa~~~~~~~vd~VivGad~I~~nG~lvnkiGT~~lA~~A~e~~~Pf~v~aesyK 232 (301)
T COG1184 153 SRPRGEGRIMAKELRQSGIPVTVIVDSAVGAFMSRVDKVLVGADAILANGALVNKIGTSPLALAARELRVPFYVVAESYK 232 (301)
T ss_pred CCCcchHHHHHHHHHHcCCceEEEechHHHHHHHhCCEEEECccceecCCcEEeccchHHHHHHHHHhCCCEEEEeeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCcccccccCCcccccccCCCcccccCCCccCCCCcccccccccccCCCCccEEEeCCCCCCCCCHHHHHHHhh
Q 006256 568 FHERVQLDSICSNELGDPDSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMIPPTSVPVIVREYG 647 (653)
Q Consensus 568 f~~~~~~ds~~~nElrdp~ev~~~~g~~~~~~l~~~~~~~~l~v~Np~FDvTPpeLIt~IITE~Gvi~PssV~~ilrey~ 647 (653)
|++++++|....+|++|++|+.... ...+++++||+||+||++|||+||||.|++||++++.+++|||
T Consensus 233 f~p~~~~~~~~~~~~~~~~e~~~~~------------~~~~~~v~Np~fD~TP~~~Id~iITe~G~~pp~~~~~i~~e~~ 300 (301)
T COG1184 233 FVPKTLLDTLVEIELRDPLEVAREE------------PLGNLKVRNPAFDVTPPEYIDAIITELGIIPPSSIYRILRELY 300 (301)
T ss_pred ccccccCCCcceeeccChhhccccC------------cccCccccccccCCCcHHHhheeeecCCCCCchhHHHHHHHhh
Confidence 9999999999999999999986221 1126899999999999999999999999999999999999987
No 10
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=100.00 E-value=8e-66 Score=546.44 Aligned_cols=316 Identities=18% Similarity=0.268 Sum_probs=280.9
Q ss_pred cCccccc--ccCCcceecccCcchhhhhhcccch----hHHHHHHHHhhhcCcccchHHHHHHHHHHHHHHHHhcCCCCc
Q 006256 297 RNRVELF--RHLPQYEHGTQLPVLQSKFFQLDTL----HPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPA 370 (653)
Q Consensus 297 ~~~v~lf--~hLP~~~~~~~~~~~~~~~~ai~~m----hPAI~~LGl~~~~~~i~Gsnaraiaml~a~~~vI~dy~~p~~ 370 (653)
.+.|.|| +.||++..|+.|.++++++.+|++| +|+| |.+++++|++++++....
T Consensus 21 ~~~l~ilDQ~~lP~~~~~~~~~~~~~v~~aI~~M~vRGApaI--------------gvaAa~glal~~~~~~~~------ 80 (356)
T PRK08334 21 EGKVYMIDQRLLPREFKVIELRTVEEVAEAIKTMTVRGAPAI--------------GAAAAFGLALYAETSKAK------ 80 (356)
T ss_pred CCEEEEEecCCCCCeEEEEEeCCHHHHHHHHHhCcccCcHHH--------------HHHHHHHHHHHHHhcccC------
Confidence 3478999 9999999999999999999999999 6999 558899998888763211
Q ss_pred cchHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006256 371 KTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVT 450 (653)
Q Consensus 371 ~~~~rdL~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~~~~~~~~~~eaK~~L~e~I~~fi~E~i~~a~~~Ia~~a~~ 450 (653)
...++.+.|+..+++|.++|||++||.||+++|++.+.... ..+.++.++.+.+..++|+++ ...++++|+++|++
T Consensus 81 --~~~~~~~~l~~~~~~L~~~RPTavnL~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~a~~i~~~-d~~~~~~Ig~~g~~ 156 (356)
T PRK08334 81 --TKDEFMDGFYKAYETLKNTRPTAVNLFWALNRIKKLVEEHL-EDPLDEIKRLIVEEAQKIADE-DVEANLRMGHYGAE 156 (356)
T ss_pred --CHHHHHHHHHHHHHHHHHcCCcHHhHHHHHHHHHHHHHhhc-cCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHh
Confidence 23668888999999999999999999999999998876431 135788999999999999988 56789999999999
Q ss_pred hccCCCEEEEeCC--------hHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH-HHHHhCCCCEEEEccchHHHHhh
Q 006256 451 KIRDGDVLLTYGS--------SSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RRLVRKGLSCTYTHINAISYIIH 521 (653)
Q Consensus 451 ~I~dGdvILT~g~--------Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La-~eL~~~GI~vT~I~DsAv~~iM~ 521 (653)
+|.||+ |||||| +.++.++|+.|+++|+.|+|||+||||++||.+|+ ++|.+.||+||+|+|||++|+|+
T Consensus 157 li~dg~-ILTHcnaG~LAt~~~gTal~vi~~A~~~gk~~~V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~Dsav~~~M~ 235 (356)
T PRK08334 157 VLPEGN-VLTHCNAGSLATVHLGTVGAVLRVMHKDGTLKLLWVDETRPVLQGARLSAWEYHYDGIPLKLISDNMAGFVMQ 235 (356)
T ss_pred hcCCCC-EEEecCcchhhhcccchHHHHHHHHHHcCCeEEEEECCCCchhhHHHHHHHHHHHCCCCEEEEehhHHHHHhh
Confidence 999999 999997 45677999999999999999999999999999996 99999999999999999999997
Q ss_pred --hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeeccccccccccccCcccccccCCcccccccCCCccccc
Q 006256 522 --EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGDPDSISKVPGREDINH 599 (653)
Q Consensus 522 --~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~~~ds~~~nElrdp~ev~~~~g~~~~~~ 599 (653)
+||+||+|||+|++||+++||+|||++|++||+|||||||||+++||+.....+..+.+|+|+|+|++.+.|.
T Consensus 236 ~~~Vd~VivGAd~I~~nG~v~NKiGTy~lA~~Ak~~~vPfyV~Ap~~t~d~~~~~~~~i~iE~r~~~ev~~~~~~----- 310 (356)
T PRK08334 236 QGKVDAIIVGADRIVANGDFANKIGTYTLAVLAKEHGIPFFTVAPLSTIDMSLKSGKEIPIEERSPEEVLTCGGC----- 310 (356)
T ss_pred hcCCCEEEECccEEecCCCEeehhhHHHHHHHHHHhCCCEEEEcccCccCCCCCCCcccccccCChHHheeccCc-----
Confidence 7999999999999999999999999999999999999999999999999888888889999999999876442
Q ss_pred CCCccCCCCcccccccccccCCCCccEEEeCCCCCCCCCHHHHHHHhh
Q 006256 600 LDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMIPPTSVPVIVREYG 647 (653)
Q Consensus 600 l~~~~~~~~l~v~Np~FDvTPpeLIt~IITE~Gvi~PssV~~ilrey~ 647 (653)
...++++++||+||||||+|||+||||.|++.|++...+ +++.
T Consensus 311 ----~~~~~~~v~NPaFDvTPp~lIt~iITE~Gv~~P~~~~~~-~~~~ 353 (356)
T PRK08334 311 ----RIAPDVDVYNPAFDVTPHKYLTGIITDRGVVWPPFERNL-KKLF 353 (356)
T ss_pred ----ccCCCcceecccccCCCHHHCCEEEcCCCccCCchHHHH-HHHh
Confidence 223479999999999999999999999999999876644 4444
No 11
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=100.00 E-value=4.6e-66 Score=544.32 Aligned_cols=292 Identities=23% Similarity=0.330 Sum_probs=255.8
Q ss_pred cCccccc--ccCCcceecccCcchhhhhhcccch----hHHHHHHHHhhhcCcccchHHHHHHHHHHHHHHHHhcCCCCc
Q 006256 297 RNRVELF--RHLPQYEHGTQLPVLQSKFFQLDTL----HPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPA 370 (653)
Q Consensus 297 ~~~v~lf--~hLP~~~~~~~~~~~~~~~~ai~~m----hPAI~~LGl~~~~~~i~Gsnaraiaml~a~~~vI~dy~~p~~ 370 (653)
.++|.|| +.||+++.|+.|.++++++.+|++| +|+| +.++|++++++..+.
T Consensus 19 ~~~l~~lDq~~lP~~~~~~~~~~~~~~~~aI~~m~vRGAp~i--------------g~~aa~g~~l~~~~~--------- 75 (329)
T PRK06371 19 DGEVKLIDQRKLPDKIEIFEAKNSDDVAYAIKNMVVRGAPAI--------------GVTAAYGLAMASKNG--------- 75 (329)
T ss_pred CCEEEEEecCCCCCeEEEEEeCCHHHHHHHHHhCeecChHHH--------------HHHHHHHHHHHHHhH---------
Confidence 3578999 9999999999999999999999999 7999 558888987776432
Q ss_pred cchHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006256 371 KTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVT 450 (653)
Q Consensus 371 ~~~~rdL~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~~~~~~~~~~eaK~~L~e~I~~fi~E~i~~a~~~Ia~~a~~ 450 (653)
..+...+++|.+||||++||+||+++|+... .+.+++++.+.|. ..++++|+++|.+
T Consensus 76 --------~~~~~~~~~L~~~RPtavnL~~a~~~~~~~~------~~~~~a~~~~~e~---------~~~~~~I~~~g~~ 132 (329)
T PRK06371 76 --------ENMDEAVEKIRSTRPTAYDLFKAIRYMNSNE------FDMNAARRYAMEI---------IGRSKKIGEYGNE 132 (329)
T ss_pred --------HHHHHHHHHHHhcCcchhhHHHHHHHHHhhc------CcHHHHHHHHHHH---------HHHHHHHHHHHHH
Confidence 2267788999999999999999999997542 2355665544443 3477899999999
Q ss_pred hccCCCEEEEeCChH--------HHHHHHHHHHHcCCeeEEEEeCCCCCchHHHH-HHHHHhCCCCEEEEccchHHHHhh
Q 006256 451 KIRDGDVLLTYGSSS--------AVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-LRRLVRKGLSCTYTHINAISYIIH 521 (653)
Q Consensus 451 ~I~dGdvILT~g~Ss--------~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~L-a~eL~~~GI~vT~I~DsAv~~iM~ 521 (653)
+|++|++|||||||. ++.++|+.|+++|++|+|||+||||++||.+| +++|.+.||+||||+|||++|+|+
T Consensus 133 ~I~~g~~ILThcnsg~la~~~~gTal~~l~~A~~~gk~f~V~v~EsRP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~M~ 212 (329)
T PRK06371 133 LIKNGARILTHCNAGALAVVDWGTALAPIRIAHRNGKNIFVFVDETRPRLQGARLTAWELAQEGIDHAIIADNAAGYFMR 212 (329)
T ss_pred HcCCCCEEEEeCCCCcceeccchhHHHHHHHHHHcCCeeEEEECCCCCcchHHHHHHHHHHHCCCCEEEEcccHHHHHhh
Confidence 999999999999873 34789999999999999999999999999997 699999999999999999999998
Q ss_pred --hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeeccccccccccccCcccccccCCcccccccCCCccccc
Q 006256 522 --EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGDPDSISKVPGREDINH 599 (653)
Q Consensus 522 --~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~~~ds~~~nElrdp~ev~~~~g~~~~~~ 599 (653)
+||+||+|||+|++||+++||+|||++|++||+||||||||||+++|+.....+..+.+|+|+|+|++.+.|..
T Consensus 213 ~~~Vd~VivGAd~I~aNG~v~NKiGT~~lAl~Ak~~~VPfyV~a~~~t~d~~~~~g~~i~iEer~~~ev~~~~g~~---- 288 (329)
T PRK06371 213 KKEIDLVIVGADRIASNGDFANKIGTYEKAVLAKVNGIPFYVAAPGSTFDFSIKSGDEIPIEERDENEVLEINGCR---- 288 (329)
T ss_pred hcCCCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEeccccccCCCCCCcCccccccCCHHHeeccCCee----
Confidence 59999999999999999999999999999999999999999998888877666777889999999998764431
Q ss_pred CCCccCCCCcccccccccccCCCCccEEEeCCCCCCCCCHHHH
Q 006256 600 LDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMIPPTSVPVI 642 (653)
Q Consensus 600 l~~~~~~~~l~v~Np~FDvTPpeLIt~IITE~Gvi~PssV~~i 642 (653)
..+++++++||+||+|||+|||+||||.|+++|++++.+
T Consensus 289 ----~~p~~~~v~Np~FDvTP~elIt~iITE~Gv~~p~~i~~~ 327 (329)
T PRK06371 289 ----IGPQESHARNPAFDVTPNEYVTGFITEYGIFKPNELWKL 327 (329)
T ss_pred ----cCCCCccccCcCccCCCHHHCCEEEccCCccChHHhhhc
Confidence 345688999999999999999999999999999988764
No 12
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=100.00 E-value=1.5e-65 Score=537.94 Aligned_cols=292 Identities=25% Similarity=0.397 Sum_probs=256.2
Q ss_pred CcchhhhhhcccchhHHHHHHHHhhhcCcccchHHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcCCc
Q 006256 315 LPVLQSKFFQLDTLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPL 394 (653)
Q Consensus 315 ~~~~~~~~~ai~~mhPAI~~LGl~~~~~~i~Gsnaraiaml~a~~~vI~dy~~p~~~~~~rdL~~~L~~~i~~L~~aRPt 394 (653)
|+++++.+.+|+.| +++|+.+.|++.+.++...++.+.+. ..++|...|+..+++|.+|||+
T Consensus 1 ~~~~~~~~~~I~~m--------------~vrGa~~ia~aa~~~l~~~~~~~~~~----~~~e~~~~l~~~~~~L~~~RPt 62 (303)
T TIGR00524 1 CRTYEDVADAIKSM--------------VVRGAPAIGVAAAYGLALAARKIETD----NVEEFKEDLEKAADFLLSTRPT 62 (303)
T ss_pred CCCHHHHHHHHHhC--------------eecChHHHHHHHHHHHHHHHHhccCC----CHHHHHHHHHHHHHHHHHhCCc
Confidence 35566766666666 45555555555555555555544332 4577888899999999999999
Q ss_pred cccHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEeCCh--------HH
Q 006256 395 SVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSS--------SA 466 (653)
Q Consensus 395 sVsmgNAIr~lk~~I~~~~~~~~~~eaK~~L~e~I~~fi~E~i~~a~~~Ia~~a~~~I~dGdvILT~g~S--------s~ 466 (653)
+++|+|+++++++.+.. ..+.+++|+.+++.+++|++|.+ .+++.|+++|.++|.+|++|||||+| ++
T Consensus 63 ~v~l~na~~~~~~~i~~---~~~~~~~k~~l~~~~~~~~~e~~-~~~~~Ia~~a~~~I~~g~~ILT~~~Sg~lat~~~~t 138 (303)
T TIGR00524 63 AVNLFWALERVLNSAEN---GESVEEAKESLLREAIEIIEEDL-ETNRKIGENGAKLIKDGDTVLTHCNAGALATSDYGT 138 (303)
T ss_pred hhhHHHHHHHHHHHHhc---cCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHccCCCEEEEecCCccccccCcch
Confidence 99999999999988853 24678999999999999999954 68899999999999999999999999 89
Q ss_pred HHHHHHHHHHcCCeeEEEEeCCCCCchH-HHHHHHHHhCCCCEEEEccchHHHHhh--hccEEEEcceeEecCCCeeccc
Q 006256 467 VEMILQHAHELGKQFRVVIVDSRPKHEG-KLLLRRLVRKGLSCTYTHINAISYIIH--EVTRVFLGASSVLSNGTVCSRV 543 (653)
Q Consensus 467 Ve~vL~~A~e~gk~f~ViV~ESRP~~EG-~~La~eL~~~GI~vT~I~DsAv~~iM~--~Vd~VllGAdaIlaNG~V~NKi 543 (653)
|+++|+.|+++|++|+|||+||||++|| +.++++|.+.||+||||+|++++|+|+ +||+||+|||+|++||+++||+
T Consensus 139 v~~~l~~A~~~g~~~~V~v~EsrP~~~G~~~~a~~L~~~gI~vtlI~Dsa~~~~m~~~~vd~VlvGAd~v~~nG~v~nk~ 218 (303)
T TIGR00524 139 ALGVIRSAWEDGKRIRVIACETRPRNQGSRLTAWELMQDGIDVTLITDSMAAYFMQKGEIDAVIVGADRIARNGDVANKI 218 (303)
T ss_pred HHHHHHHHHHcCCceEEEECCCCCccchHHHHHHHHHHCCCCEEEEChhHHHHHccccCCCEEEEcccEEecCCCEeEhh
Confidence 9999999999999999999999999999 666899999999999999999999999 9999999999999999999999
Q ss_pred chHHHHHHHhhCCCCeeeeccccccccccccCcccccccCCcccccccCCCcccccCCCccCCCCcccccccccccCCCC
Q 006256 544 GTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGDPDSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDY 623 (653)
Q Consensus 544 GT~~lAl~Ak~~~VPVyV~aetyKf~~~~~~ds~~~nElrdp~ev~~~~g~~~~~~l~~~~~~~~l~v~Np~FDvTPpeL 623 (653)
|||++|++||+|+||||||||+|||+++++.|..+.+|++||+|+....|.. ..+++++++||+||+|||+|
T Consensus 219 GT~~lA~~Ak~~~vPv~V~a~s~K~~~~~~~g~~i~~e~~~~~ev~~~~~~~--------~~~~~~~v~np~fD~TP~~l 290 (303)
T TIGR00524 219 GTYQLAVLAKEFRIPFFVAAPLSTFDTKTSCGEDIVIEERDPEEVAQVGGVR--------IAPLGVKVYNPAFDITPHDL 290 (303)
T ss_pred hHHHHHHHHHHhCCCEEEecccccccCCCCCccccccccCCHHHhccccCcc--------cCCCCceeecccccCCCHHH
Confidence 9999999999999999999999999999999888899999999997654421 23568999999999999999
Q ss_pred ccEEEeCCCCCCC
Q 006256 624 VSLIITDYGMIPP 636 (653)
Q Consensus 624 It~IITE~Gvi~P 636 (653)
||+||||.|+++|
T Consensus 291 It~iiTe~Gv~~p 303 (303)
T TIGR00524 291 IDAIITEKGIITP 303 (303)
T ss_pred CCEEEcCCCccCc
Confidence 9999999999987
No 13
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=100.00 E-value=5.7e-65 Score=525.72 Aligned_cols=281 Identities=39% Similarity=0.619 Sum_probs=246.5
Q ss_pred cccchHHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhcCCCccHHHHH
Q 006256 343 DICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAK 422 (653)
Q Consensus 343 ~i~Gsnaraiaml~a~~~vI~dy~~p~~~~~~rdL~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~~~~~~~~~~eaK 422 (653)
+|+|+.++|++++.+|+++++++.++ ...+|++.|+.++++|.++||++++|+|+++++++.+.+.....+.++.+
T Consensus 1 qi~Gs~~~ai~al~~L~~~i~~~~~~----~~~el~~~L~~~~~~L~~arP~~~~l~n~v~~~~~~i~~~~~~~~~~~~~ 76 (282)
T PF01008_consen 1 QIRGSPAIAIAALEALRQVISDSKAT----TVQELIEELRKAAKRLIKARPTSVSLGNAVRRILREIRKLDESEDFEEAK 76 (282)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHHCHCS----SHHHHHHHHHHHHHHHHTSSTS-HHHHHHHHHHHHHHHHHHTTSSHHHHH
T ss_pred CccChHHHHHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHhhhhhhhhcccchHHHH
Confidence 58999999999999999999998764 56788999999999999999999999999999999887666667789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHH
Q 006256 423 ATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLV 502 (653)
Q Consensus 423 ~~L~e~I~~fi~E~i~~a~~~Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~ 502 (653)
+.+++.+++|++| +..+.+.|++++.++|++|++|||||||++|+.+|+.|+++|++|+|||+||||++||+.|+++|.
T Consensus 77 ~~l~~~i~~~~~e-~~~~~~~I~~~~~~~I~~~~~ILT~~~S~~v~~~l~~a~~~~~~~~V~v~es~P~~eG~~~a~~L~ 155 (282)
T PF01008_consen 77 QSLLEAIDEFLDE-IEQAREKIADHASELINDGDTILTHGYSSTVERFLLSAKKKGKKFRVIVLESRPYNEGRLMAKELA 155 (282)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHCCC-TTEEEEEES--SHHHHHHHHHHHTTEEEEEEEE--TTTTHHHTHHHHHH
T ss_pred HHHHHHHHHHHhH-HHHHHHHHHHHHHHhccCCeEEEEeCCchHHHHHHHHHHHcCCeEEEEEccCCcchhhhhHHHHhh
Confidence 9999999999999 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCEEEEccchHHHHhhh-ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeeccccccccccccCcccccc
Q 006256 503 RKGLSCTYTHINAISYIIHE-VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNE 581 (653)
Q Consensus 503 ~~GI~vT~I~DsAv~~iM~~-Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~~~ds~~~nE 581 (653)
+.||+|+||+|++++|+|++ ||+||+|||+|++||+++||+||+++|++||+|+||||||||+|||+++++++....||
T Consensus 156 ~~gi~v~~i~d~~~~~~m~~~vd~VliGad~v~~nG~v~nk~Gt~~~a~~Ak~~~vPv~v~~~~~K~~~~~~~~~~~~~e 235 (282)
T PF01008_consen 156 EAGIPVTLIPDSAVGYVMPRDVDKVLIGADAVLANGGVVNKVGTLQLALAAKEFNVPVYVLAESYKFSPRYPLDQDSFNE 235 (282)
T ss_dssp HTT-EEEEE-GGGHHHHHHCTESEEEEE-SEEETTS-EEEETTHHHHHHHHHHTT-EEEEE--GGGBETTCSSGGGSSS-
T ss_pred hcceeEEEEechHHHHHHHHhCCeeEEeeeEEecCCCEeehhhHHHHHHHHHhhCCCEEEEcccccccccccccchhhhh
Confidence 99999999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccccCCCcccccCCCccCCCCcccccccccccCCCCccEEEeCCCCCCC
Q 006256 582 LGDPDSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMIPP 636 (653)
Q Consensus 582 lrdp~ev~~~~g~~~~~~l~~~~~~~~l~v~Np~FDvTPpeLIt~IITE~Gvi~P 636 (653)
+++++|+...++.. ...++++++||+||+|||+|||+||||.|+++|
T Consensus 236 ~~~~~~v~~~~~~~--------~~~~~v~~~~p~~D~tP~~~It~~iTe~G~~~P 282 (282)
T PF01008_consen 236 LRDPQEVLPFDGSS--------IVPENVDVINPLFDYTPPDLITLIITELGILPP 282 (282)
T ss_dssp B--THHHHEETTEE--------ESTTTEEEE-BSEEEEEGGG-SEEEETTEEE-C
T ss_pred ccccceeeccCCcc--------cccceeeccCccEeecCHHHCCEEEcCCCCCCc
Confidence 99999998765532 234589999999999999999999999999987
No 14
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=100.00 E-value=1.4e-61 Score=500.50 Aligned_cols=232 Identities=27% Similarity=0.390 Sum_probs=213.0
Q ss_pred HHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 006256 375 RDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRD 454 (653)
Q Consensus 375 rdL~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~~~~~~~~~~eaK~~L~e~I~~fi~E~i~~a~~~Ia~~a~~~I~d 454 (653)
.++++.|....++|.++|||++||.|++++|. .++.++.+.+.+++|+++ +..++++|+++|+++|.+
T Consensus 42 ~~~~~~l~~~~~~L~~aRPTavnL~~a~~~~~-----------~~~~~~~~~~~a~~~~~~-~~~~~~~I~~~a~~~I~~ 109 (275)
T PRK08335 42 EELENALKELREEIPEVNPTMASLYNLARFIP-----------ITNNPELVKSRAEEFLRL-MEEAKREIGNIGSELIDD 109 (275)
T ss_pred HHHHHHHHHHHHHHHHcCCcHHhHHHHHHHhc-----------hhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCC
Confidence 45677789999999999999999999999971 245667788999999977 788999999999999999
Q ss_pred CCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcceeEe
Q 006256 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVL 534 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAdaIl 534 (653)
|++|||||||++|.++|+.|+++|++|+|||+||||++||++|+++|.+.||+||||+|++++|+|++||+||+|||+|+
T Consensus 110 g~~ILTh~~S~tv~~~l~~A~~~gk~~~V~v~EsrP~~qG~~la~eL~~~GI~vtlI~Dsa~~~~m~~vd~VivGAD~I~ 189 (275)
T PRK08335 110 GDVIITHSFSSAVLEILKTAKRKGKRFKVILTESAPDYEGLALANELEFLGIEFEVITDAQLGLFAKEATLALVGADNVT 189 (275)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCceEEEEecCCCchhHHHHHHHHHHCCCCEEEEeccHHHHHHHhCCEEEECccEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeecccchHHHHHHHhhCCCCeeeeccccccccccccCcccccccCCcccccccCCCcccccCCCccCCCCcccccc
Q 006256 535 SNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGDPDSISKVPGREDINHLDGWDKSENLQLLNL 614 (653)
Q Consensus 535 aNG~V~NKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~~~ds~~~nElrdp~ev~~~~g~~~~~~l~~~~~~~~l~v~Np 614 (653)
+||+++||+|||++|++||+|+||||||||+|||++.+..+ .+.+|++++ .+++++++||
T Consensus 190 ~nG~v~NKiGT~~lA~~Ak~~~vPfyV~a~~~k~~~~~~~~-~i~ieer~~-------------------~~~~~~v~Np 249 (275)
T PRK08335 190 RDGYVVNKAGTYLLALACHDNGVPFYVAAETFKFHPELKSE-EVELVERPY-------------------ARQGHRVRNV 249 (275)
T ss_pred cCCCEeehhhHHHHHHHHHHcCCCEEEECccceecccCCCC-CccccccCC-------------------CCCCceecCc
Confidence 99999999999999999999999999999999999987766 445555533 2457899999
Q ss_pred cccccCCCCccEEEeCCCCCCCCC
Q 006256 615 IYDATPSDYVSLIITDYGMIPPTS 638 (653)
Q Consensus 615 ~FDvTPpeLIt~IITE~Gvi~Pss 638 (653)
+||+||++|||+||||.|++.|+.
T Consensus 250 ~FDvTP~~lIt~iITE~Gv~~p~~ 273 (275)
T PRK08335 250 LFDVTPWKYVRGIITELGILVPPR 273 (275)
T ss_pred CccCCCHHHCCEEEccCCccCCCC
Confidence 999999999999999999997764
No 15
>KOG1468 consensus Predicted translation initiation factor related to eIF-2B alpha/beta/delta subunits (CIG2/IDI2) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.6e-59 Score=471.70 Aligned_cols=311 Identities=22% Similarity=0.324 Sum_probs=274.5
Q ss_pred cCccccc--ccCCcceecccCcchhhhhhcccch----hHHHHHHHHhhhcCcccchHHHHHHHHHHHHHHHHhcCCCCc
Q 006256 297 RNRVELF--RHLPQYEHGTQLPVLQSKFFQLDTL----HPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPA 370 (653)
Q Consensus 297 ~~~v~lf--~hLP~~~~~~~~~~~~~~~~ai~~m----hPAI~~LGl~~~~~~i~Gsnaraiaml~a~~~vI~dy~~p~~ 370 (653)
+.++++| +.||++..|+.+.++++.|..|+.| +||| +...|++++..++. +.+.
T Consensus 10 ~~sl~vLDQllLP~e~kYi~v~~v~d~~~vIk~MqVRGAPaI--------------Aivg~Lslaveiq~--~~~~---- 69 (354)
T KOG1468|consen 10 RGSLEVLDQLLLPYETKYIPVRGVSDAWAVIKSMQVRGAPAI--------------AIVGSLSLAVEIQK--KGFP---- 69 (354)
T ss_pred CchHhHHHHhhCcCceeEEEecchhHHHHHHHHHhhcCccHH--------------HHHHHHHHHHHHhh--ccCC----
Confidence 3468888 8999999999999999999999999 6999 44667787776655 3332
Q ss_pred cchHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006256 371 KTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVT 450 (653)
Q Consensus 371 ~~~~rdL~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~~~~~~~~~~eaK~~L~e~I~~fi~E~i~~a~~~Ia~~a~~ 450 (653)
.+..+.+.|...++||.++|||+|||.|+.+.|+..+.+.. ..+...++.+++..++++.+ ....|+.|+.+|++
T Consensus 70 --~~ds~~~~i~~kl~fLvssRPTAVnl~~aa~~lk~i~~~~~--~~~~~~~~~~~~~~e~ml~~-dl~~N~~ig~~g~~ 144 (354)
T KOG1468|consen 70 --GSDSLKEFIINKLNFLVSSRPTAVNLANAANELKPIAASED--KSEKAKREKCISYTEDMLEK-DLADNRAIGDNGAK 144 (354)
T ss_pred --chHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHH-HHhhhhhhhHHHHH
Confidence 23447788999999999999999999999999999886653 23466788888888888877 56688899999998
Q ss_pred hccC------CCEEEEeCC---------hHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH-HHHHhCCCCEEEEccc
Q 006256 451 KIRD------GDVLLTYGS---------SSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RRLVRKGLSCTYTHIN 514 (653)
Q Consensus 451 ~I~d------GdvILT~g~---------Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La-~eL~~~GI~vT~I~Ds 514 (653)
++.+ .-+|||||| ++++ ++|+..|+.|+..+|||+|||||+||.||+ .||....||.|+|+||
T Consensus 145 ~Llq~~~~~~kltVlThCNTGSLATagyGTAL-GVIRsLh~~grLehvyctETRPyNQGsRLTA~ELvhekiPatLItDS 223 (354)
T KOG1468|consen 145 ELLQAVKDKGKLTVLTHCNTGSLATAGYGTAL-GVIRSLHSLGRLEHVYCTETRPYNQGSRLTAFELVHEKIPATLITDS 223 (354)
T ss_pred HHHHhcCCCCceEEEEeecCCchhhcccchHH-HHHHHHHhcCCcceEEecccccCCcccchhhHHHHhccCcchhhhhH
Confidence 7743 257999976 5777 899999999999999999999999999997 9999999999999999
Q ss_pred hHHHHhh--hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeeccccccccccccCcccccccCCcccccccC
Q 006256 515 AISYIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGDPDSISKVP 592 (653)
Q Consensus 515 Av~~iM~--~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~~~ds~~~nElrdp~ev~~~~ 592 (653)
|++++|+ +||.|++|||+|.+||+.+||||||++|++||||||||||++|...++.....|..+.+|+|+|.|++.+.
T Consensus 224 ~vA~~m~~~~vdavvvGADrVarNGDTANKIGTy~LAv~aKhhgipFyvaaP~tsid~~l~tG~eIiIEERp~~Em~~v~ 303 (354)
T KOG1468|consen 224 MVAAAMKNHQVDAVVVGADRVARNGDTANKIGTYQLAVLAKHHGIPFYVAAPFTSIDLSLATGDEIIIEERPPAEMTHVT 303 (354)
T ss_pred HHHHHHhcCCCCEEEEcccceeccCcchhhhhhhHHHHHHHhcCCceEEeccccccccccCCCCeeEEeecCchHheeec
Confidence 9999999 89999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCcccccCCCccCCCCcccccccccccCCCCccEEEeCCCCCCCCC
Q 006256 593 GREDINHLDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMIPPTS 638 (653)
Q Consensus 593 g~~~~~~l~~~~~~~~l~v~Np~FDvTPpeLIt~IITE~Gvi~Pss 638 (653)
|...+ .+..+++.||||+||+||++|||+||||.|+++|..
T Consensus 304 gg~~v-----~Iaapgi~vwnPAFDvTPa~LItgIiTe~g~f~~~~ 344 (354)
T KOG1468|consen 304 GGEGV-----RIAAPGINVWNPAFDVTPAELITGIITEKGVFTPEE 344 (354)
T ss_pred CCcce-----EecCCCCCccCccccCCHHHHHHHHhhhccccChHH
Confidence 64322 367789999999999999999999999999999984
No 16
>KOG1465 consensus Translation initiation factor 2B, beta subunit (eIF-2Bbeta/GCD7) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.1e-54 Score=439.10 Aligned_cols=306 Identities=25% Similarity=0.368 Sum_probs=281.4
Q ss_pred HHHHHHHhhhcCcccchHHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHH
Q 006256 331 AVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIA 410 (653)
Q Consensus 331 AI~~LGl~~~~~~i~Gsnaraiaml~a~~~vI~dy~~p~~~~~~rdL~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~ 410 (653)
.|-.+-..+..+++.|+.+.|+.++..|+++|.+..|+ ...+|.+.++..++.|..+.|+..+.||.+|++++.|+
T Consensus 10 ~i~~fI~~lk~r~v~gS~aiA~eTl~llr~iIs~~rw~----~~n~Li~~vr~~g~~L~~A~psE~~~gNiirrIlkliR 85 (353)
T KOG1465|consen 10 EISEFIAALKKRLVRGSYAIAIETLNLLRQIISRERWS----TANDLIESVRDVGKKLHAAQPSELSCGNIIRRILKLIR 85 (353)
T ss_pred HHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHhhCcc----cHHHHHHHHHHHHHHhhhcCCchhhhhHHHHHHHHHHH
Confidence 55566677889999999999999999999999988875 66799999999999999999999999999999999887
Q ss_pred hcCCC-----------c-----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 006256 411 KIPIS-----------L-----------------------SESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGD 456 (653)
Q Consensus 411 ~~~~~-----------~-----------------------~~~eaK~~L~e~I~~fi~E~i~~a~~~Ia~~a~~~I~dGd 456 (653)
++... . ...+.|+.+++.|++.+.| |+..++.|+.++.++|++++
T Consensus 86 eE~~~l~~~~~s~~s~~~~Sl~kLl~~~~e~~~~~~~S~~~~~~lr~~~i~~I~eli~E-ie~~~E~Ia~Qa~ehihsnE 164 (353)
T KOG1465|consen 86 EEVLELTGGATSDESSPSESLHKLLQSTEESHTNKKLSSADAKKLRKDLIEGIKELITE-IEGSRENIAVQAIEHIHSNE 164 (353)
T ss_pred HHHHHHhccCCCCCCchHHHHHHHHhCCCccccccccccccHHHHHHHHHHHHHHHHHH-HhhhhHhHHHHHHHHhccCc
Confidence 74210 0 1134788999999999999 89999999999999999999
Q ss_pred EEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcceeEecC
Q 006256 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSN 536 (653)
Q Consensus 457 vILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAdaIlaN 536 (653)
+|||+|+|.+|+.||++|.++||+|+|||.|.-|.+||+.|++.|.++||..|+|+|++++.+|++|+|||+|+++|++|
T Consensus 165 viLT~g~SrTV~~FL~~A~kk~Rkf~viVaE~~p~~qgH~~Ak~la~~giettVI~daaVfA~MsrVnKVIigt~avl~N 244 (353)
T KOG1465|consen 165 VILTLGSSRTVENFLKHAAKKGRKFRVIVAEGAPNNQGHELAKPLAQAGIETTVIPDAAVFAMMSRVNKVIIGTHAVLAN 244 (353)
T ss_pred eEEecCccHHHHHHHHHHHhccCceEEEEeecCCcccchHhhHHHHHcCCeeEEeccHHHHHHhhhcceEEEEeeeEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeecccchHHHHHHHhhCCCCeeeeccccccccccccCcccccccCCcccccccCCCcccccCCCccCCCCcccccccc
Q 006256 537 GTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGDPDSISKVPGREDINHLDGWDKSENLQLLNLIY 616 (653)
Q Consensus 537 G~V~NKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~~~ds~~~nElrdp~ev~~~~g~~~~~~l~~~~~~~~l~v~Np~F 616 (653)
|++....|++++|++||+|.+|||||++.||+|+.++++.+..+|++.|++++.+... .....++++||+|
T Consensus 245 Ggl~~~~G~~~vAlaAk~h~vPv~VlAp~yKLsPlyp~~~ds~~~f~s~~~il~~~e~---------~~~~~~~v~nP~f 315 (353)
T KOG1465|consen 245 GGLRAPSGVHTVALAAKHHSVPVIVLAPMYKLSPLYPTNPDSFHEFRSPSEILPFSEG---------DPAGRVDVLNPAF 315 (353)
T ss_pred CCeeccchHHHHHHHHHhcCCcEEEecchhhcCCCCCCCHHHHHhcCCcccccCcccc---------Ccccceeeccccc
Confidence 9999999999999999999999999999999999999999888999999999865321 2235689999999
Q ss_pred cccCCCCccEEEeCCCCCCCCCHHHHHHHhhcCC
Q 006256 617 DATPSDYVSLIITDYGMIPPTSVPVIVREYGRGQ 650 (653)
Q Consensus 617 DvTPpeLIt~IITE~Gvi~PssV~~ilrey~~~~ 650 (653)
||+||||||+|||+.|.+.|++|++++.+||+.+
T Consensus 316 DyvppeLVtLFIsNtgg~~PSyvyRl~~d~Yh~~ 349 (353)
T KOG1465|consen 316 DYVPPELVTLFISNTGGVAPSYVYRLMEDLYHPQ 349 (353)
T ss_pred ccCChhheeEEEecCCCCChHHHHHHHHHhcChh
Confidence 9999999999999999999999999999999754
No 17
>KOG1466 consensus Translation initiation factor 2B, alpha subunit (eIF-2Balpha/GCN3) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.2e-51 Score=411.65 Aligned_cols=281 Identities=26% Similarity=0.352 Sum_probs=241.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhc--CCCccHHHHHHHHH
Q 006256 349 ARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKI--PISLSESEAKATLH 426 (653)
Q Consensus 349 araiaml~a~~~vI~dy~~p~~~~~~rdL~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~~~--~~~~~~~eaK~~L~ 426 (653)
+-++|.+.++-++++... .++..+|.+.|+...+.|.+.-++++++..+.+-+.+.+..- .+..+.+++|++++
T Consensus 28 a~~vAAIraL~~vL~~s~----a~Ti~el~~~l~~a~~tL~~~d~ss~Sl~agcdlF~Rfvtr~slld~~Df~~ck~~l~ 103 (313)
T KOG1466|consen 28 AMAVAAIRALLEVLRRSQ----ATTIAELENELKSASATLKKTDTSSISLRAGCDLFMRFVTRASLLDYEDFEQCKQHLL 103 (313)
T ss_pred hhHHHHHHHHHHHHhhcc----cchHHHHHHHHHHHHHHHHccCccchhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 445577777777776533 256789999999999999999999999998876666555332 23346789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCC
Q 006256 427 SDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGL 506 (653)
Q Consensus 427 e~I~~fi~E~i~~a~~~Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI 506 (653)
|..+.|++. ...++..|++.+..+|.||++|||||||++|..+|..|+++++.|+|||+||||..+|..|+++|.+.||
T Consensus 104 erg~~F~~~-~~~sR~~IA~l~~~Fi~dg~~ILtHg~SRvVl~~L~~Aa~~~~~F~V~vTEsrPd~sG~lm~~~L~~~~I 182 (313)
T KOG1466|consen 104 ERGELFIER-ARKSRQKIAMLAQDFITDGCTILTHGYSRVVLEVLLTAAQNKKRFRVYVTESRPDGSGKLMAKELKKLGI 182 (313)
T ss_pred HHHHHHHHH-HHHHHHHHHHHhhhHhhCCCEEEEcchhHHHHHHHHHHHhcCceEEEEEecCCCCCchhHHHHHHHhcCC
Confidence 999999966 7789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEccchHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeeccccccccccccCcc-cccccCCc
Q 006256 507 SCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSI-CSNELGDP 585 (653)
Q Consensus 507 ~vT~I~DsAv~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~~~ds~-~~nElrdp 585 (653)
|||+|.|+|++|+|.+||+||+|||.|..||+++|++|||++|++||+.++|||||+|+|||.+.+++++. ++++.+ |
T Consensus 183 PvtlvlDSaVgyvMe~vD~VlVGAEGVvEsGGIIN~iGTyq~~v~Ak~~~kPfYV~AES~KFvRlfPLnQ~Dlp~~~~-p 261 (313)
T KOG1466|consen 183 PVTLVLDSAVGYVMERVDLVLVGAEGVVESGGIINKIGTYQVAVCAKSMNKPFYVVAESHKFVRLFPLNQKDLPPALP-P 261 (313)
T ss_pred CeEEEehhhHHHHHhhccEEEEccceeeecCceeeecccchhhhhHHhcCCCeEEEeeccceeeeccCcccccccccC-C
Confidence 99999999999999999999999999999999999999999999999999999999999999999999873 344432 2
Q ss_pred ccccccCCCcccccCCCccCCCCcccccccccccCCCCccEEEeCCCCCCCCCHHHHHHHh
Q 006256 586 DSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMIPPTSVPVIVREY 646 (653)
Q Consensus 586 ~ev~~~~g~~~~~~l~~~~~~~~l~v~Np~FDvTPpeLIt~IITE~Gvi~PssV~~ilrey 646 (653)
-+.. . .....+++...||..|||||+|||++|||+|+++|+.|..-|=++
T Consensus 262 ~~f~---~--------~~~~~~~~~~e~p~vDYTpPeyiTlL~TDLGvltPSaVsdELIKl 311 (313)
T KOG1466|consen 262 FKFS---R--------PVPEREDVEREHPTVDYTPPEYLTLLFTDLGVLTPSAVSDELIKL 311 (313)
T ss_pred cccC---C--------CCCcHHhhhhcCCCcccChHHHHHHHHhhccccChhhhhHHHHHh
Confidence 2211 0 011224678889999999999999999999999999997665443
No 18
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=100.00 E-value=4.2e-50 Score=410.38 Aligned_cols=247 Identities=21% Similarity=0.271 Sum_probs=198.4
Q ss_pred hhcCcccchHHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhcCCCccH
Q 006256 339 YLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSE 418 (653)
Q Consensus 339 ~~~~~i~Gsnaraiaml~a~~~vI~dy~~p~~~~~~rdL~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~~~~~~~~~ 418 (653)
+.+..-+|+.+.++-+|..|+.-- .+ ...++.|.++||-+.-+.|..++++..- +...
T Consensus 6 ~~~d~~~Gs~~~~~~~l~~l~~~~------------~~-----~~~~~~l~~~~~~Ma~~~n~~~~~~~~~-----~~~~ 63 (253)
T PRK06372 6 LLSDNASGSADVAFKIISFFSHND------------ID-----ENIIKDLKNYFFGMGLVRNVCDSIISGP-----NLRP 63 (253)
T ss_pred hhcCccccHHHHHHHHHHHHhccc------------hh-----hhHHHHHHHhCcchHHHHHHHHHHHccC-----cCCH
Confidence 356778899998888777664311 11 1256678889997766666666665321 1222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH
Q 006256 419 SEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL 498 (653)
Q Consensus 419 ~eaK~~L~e~I~~fi~E~i~~a~~~Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La 498 (653)
++.+.. +..+++.|+++|.++| +|++|||||+|++|+.+|..+ ++.|+|||+||||++||+.|+
T Consensus 64 ~~~~~~------------~~~~~~~~~~~A~~~i-~~dvILT~s~S~~v~~~l~~~---~~~~~V~v~ESrP~~eG~~~a 127 (253)
T PRK06372 64 KNLKLG------------IEKHEKMAIEHAKPLF-NDSVIGTISSSQVLKAFISSS---EKIKSVYILESRPMLEGIDMA 127 (253)
T ss_pred HHHHHH------------HHHHHHHHHHHHHhhc-CCCEEEEeCCcHHHHHHHHhc---CCCCEEEEecCCCchHHHHHH
Confidence 333221 3357888999999999 779999999999999998664 345899999999999999999
Q ss_pred HHHHhCCCCEEEEccchHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeeccccccccccccCccc
Q 006256 499 RRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSIC 578 (653)
Q Consensus 499 ~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~~~ds~~ 578 (653)
++|.+.||+||||+|++++++|++||+||+|||+|++||+++||+||+++|++||+|+|||||||++|||+++++.+...
T Consensus 128 ~~L~~~GI~vtli~Dsa~~~~m~~vd~VlvGAd~V~~nG~v~nkvGT~~~Al~A~~~~vPv~V~~~s~Kf~~~~~~~~~~ 207 (253)
T PRK06372 128 KLLVKSGIDVVLLTDASMCEAVLNVDAVIVGSDSVLYDGGLIHKNGTFPLALCARYLKKPFYSLTISMKIERNFLYSTYP 207 (253)
T ss_pred HHHHHCCCCEEEEehhHHHHHHHhCCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEEeeccccCCCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987654421
Q ss_pred ccccCCcccccccCCCcccccCCCccCCCCcccccccccccCCCCccEEEeCCCCCCCCCHH
Q 006256 579 SNELGDPDSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMIPPTSVP 640 (653)
Q Consensus 579 ~nElrdp~ev~~~~g~~~~~~l~~~~~~~~l~v~Np~FDvTPpeLIt~IITE~Gvi~PssV~ 640 (653)
..+.. ....| .++++++||+||+|||+|||+||||.|+++|++|+
T Consensus 208 ~~~~~---------------~~~~~--~~~l~v~Np~FD~TPpelI~~iITE~Gi~~pssV~ 252 (253)
T PRK06372 208 NFKNH---------------PCSEW--NIDIPCINRYFDKTPPDLIDYYINENGFVKPSDVN 252 (253)
T ss_pred ccccc---------------ccccC--CCCCceeCcCcCCCCHHHCCEEEcCCCccccccCC
Confidence 10000 01223 35789999999999999999999999999999885
No 19
>PRK00702 ribose-5-phosphate isomerase A; Provisional
Probab=97.59 E-value=0.00086 Score=68.64 Aligned_cols=118 Identities=14% Similarity=0.114 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCChHHHHHHHHHHHHcCC---eeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchH
Q 006256 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGK---QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAI 516 (653)
Q Consensus 440 a~~~Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk---~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv 516 (653)
..+.|++.|+++|++|++|. .+.||++..+++...+..+ .++|+ -+ ....+..|.+.||++..+.+
T Consensus 6 ~K~~IA~~Aa~lI~dg~~Ig-LgsGST~~~l~~~L~~~~~~~~~itvV--t~-----S~~~a~~l~~~gi~v~~l~~--- 74 (220)
T PRK00702 6 LKKAAAEAAAEYVEDGMIVG-LGTGSTAAYFIDALGERVKEGLIIGGV--PT-----SEASTELAKELGIPLFDLNE--- 74 (220)
T ss_pred HHHHHHHHHHHhCCCCCEEE-ECCcHHHHHHHHHHHhhhccCCCEEEE--CC-----cHHHHHHHHhCCCeEEcHHH---
Confidence 34578999999999999874 5666666667776654322 24443 22 33445666678988652211
Q ss_pred HHHhhhccEEEEcceeEecCCCeecccchHHH--HHHHhhCCCCeeeecccccccccc
Q 006256 517 SYIIHEVTRVFLGASSVLSNGTVCSRVGTACV--AMVAYGFHIPVLVCCEAYKFHERV 572 (653)
Q Consensus 517 ~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~l--Al~Ak~~~VPVyV~aetyKf~~~~ 572 (653)
+.++|..|.|||.|-.+++++---|-..+ -++|+.-+ -+++++...||.++.
T Consensus 75 ---~~~iD~afdGaD~vd~~~~~ikg~g~a~~~ekiva~~A~-~~vil~D~sK~v~~l 128 (220)
T PRK00702 75 ---VDSLDLYVDGADEIDPHLNLIKGGGAALTREKIVAAAAK-RFICIVDESKLVDVL 128 (220)
T ss_pred ---CCccCEEEECCCeECCCCCcEECcHHHHHHHHHHHHhcC-cEEEEEEcchhhhhc
Confidence 24689999999999999887777554443 45544444 589999999998754
No 20
>TIGR00021 rpiA ribose 5-phosphate isomerase. This model describes ribose 5-phosphate isomerase, an enzyme of the non-oxidative branch of the pentose phosphate pathway.
Probab=97.55 E-value=0.00088 Score=68.52 Aligned_cols=115 Identities=20% Similarity=0.200 Sum_probs=75.8
Q ss_pred HHHHHHHHHhccCCCEEEEeCChHHHHHHHHHHHHcCC----eeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHH
Q 006256 442 RVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGK----QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAIS 517 (653)
Q Consensus 442 ~~Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk----~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~ 517 (653)
+.|++.|+++|++|++|. .+.|+++..+++...+..+ .++|+ +- +...+..|.+.||++..+.
T Consensus 3 ~~IA~~A~~~I~~g~~I~-ldsGST~~~~~~~L~~~~~~~~l~itvV-t~------S~~~a~~l~~~gi~v~~l~----- 69 (218)
T TIGR00021 3 RAAAEAAAEYVEDGMVVG-LGTGSTVAYFIEALGERVKQEGLDIVGV-PT------SKQTAELARELGIPLSSLD----- 69 (218)
T ss_pred HHHHHHHHHhCCCCCEEE-ECCcHHHHHHHHHHHHhhhccCCCEEEE-eC------CHHHHHHHHHCCCCEEcHh-----
Confidence 468899999999999975 4555555566666654322 23333 22 2345577777899875211
Q ss_pred HHhhhccEEEEcceeEecCCCeecccchH-HH-H-HHHhhCCCCeeeecccccccccc
Q 006256 518 YIIHEVTRVFLGASSVLSNGTVCSRVGTA-CV-A-MVAYGFHIPVLVCCEAYKFHERV 572 (653)
Q Consensus 518 ~iM~~Vd~VllGAdaIlaNG~V~NKiGT~-~l-A-l~Ak~~~VPVyV~aetyKf~~~~ 572 (653)
-+.++|..|.|||.|-.|++++ |-|.. .+ - ++| ....-++++|...||.++.
T Consensus 70 -~~~~iDiafdGaD~id~~~~~i-kg~g~a~~~eKiia-~~A~~~i~l~D~sK~~~~l 124 (218)
T TIGR00021 70 -EVPELDLAIDGADEVDPNLQLI-KGGGGALLREKIVA-SASKRFIVIADESKLVDKL 124 (218)
T ss_pred -HCCccCEEEECCCeECCCCCEe-cccHHHHHHHHHHH-HhhCcEEEEEEchhhhccc
Confidence 1336999999999999999885 44332 22 1 222 2334789999999998754
No 21
>cd01398 RPI_A RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. This reaction leads to the conversion of phosphosugars into glycolysis intermediates, which are precursors for the synthesis of amino acids, vitamins, nucleotides, and cell wall components. In plants, RPI is part of the Calvin cycle as ribulose 5-phosphate is the carbon dioxide receptor in the first dark reaction of photosynthesis. There are two unrelated types of RPIs (A and B), which catalyze the same reaction, at least one type of RPI is present in an organism. RPI_A is more widely distributed than RPI_B in bacteria, eukaryotes, and archaea.
Probab=97.43 E-value=0.001 Score=67.57 Aligned_cols=117 Identities=20% Similarity=0.139 Sum_probs=75.9
Q ss_pred HHHHHHHHHhccCCCEEEEeCChHHHHHHHHHHHHcC----CeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHH
Q 006256 442 RVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELG----KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAIS 517 (653)
Q Consensus 442 ~~Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~g----k~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~ 517 (653)
+.|++.|+++|.+|++|.. +.|+++..+++...+.. +.++|+ +-| ...+..|.+.|+++..+-
T Consensus 3 ~~IA~~A~~~I~~g~~I~l-dsGST~~~l~~~L~~~~~~~~~~itvV-TnS------~~~a~~l~~~~i~vi~lg----- 69 (213)
T cd01398 3 RAAARAAVDYVEDGMVIGL-GTGSTVAYFIEALGERVREEGLNIVGV-PTS------FQTEELARELGIPLTDLD----- 69 (213)
T ss_pred HHHHHHHHHhCCCCCEEEE-CchHHHHHHHHHHHHhhhccCCCEEEE-eCc------HHHHHHHHhCCCeEEeCC-----
Confidence 4689999999999998764 55555556666664432 244444 222 234456666688765544
Q ss_pred HHhhhccEEEEcceeEecCCCeecccchHHHHH-HHhhCCCCeeeecccccccccc
Q 006256 518 YIIHEVTRVFLGASSVLSNGTVCSRVGTACVAM-VAYGFHIPVLVCCEAYKFHERV 572 (653)
Q Consensus 518 ~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl-~Ak~~~VPVyV~aetyKf~~~~ 572 (653)
---++|+.|+|||.|-.++.+..--|-+.+-- +......-+|++++..||..+.
T Consensus 70 -~~~~~D~af~Gad~id~~~~~~~~~~~a~~kek~i~~~a~~~illaD~sK~~~~l 124 (213)
T cd01398 70 -EVPRLDLAIDGADEVDPDLNLIKGGGGALLREKIVASAAKKFIVIADESKLVERL 124 (213)
T ss_pred -CccccCEEEECCCcCCCCcCcccChHHHHHHHHHHHHhcCeEEEEEecchhcccC
Confidence 11269999999999998875544434333321 2233456789999999998764
No 22
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=97.34 E-value=0.0038 Score=64.95 Aligned_cols=123 Identities=14% Similarity=0.202 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHh-CC-CCEEEEc-----
Q 006256 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-KG-LSCTYTH----- 512 (653)
Q Consensus 440 a~~~Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~-~G-I~vT~I~----- 512 (653)
..+.|++.|+++|.+|++|+.=+.|++. .+.+...+ ...++|+. -+...+.+|.+ .+ +.+.++-
T Consensus 77 ~K~~IA~~Aa~~I~~g~tIfld~GtT~~-~la~~L~~-~~~ltVvT-------nsl~ia~~l~~~~~~~~v~l~GG~~~~ 147 (256)
T PRK10434 77 KKELIAEAAVSLIHDGDSIILDAGSTVL-QMVPLLSR-FNNITVMT-------NSLHIVNALSELDNEQTILMPGGTFRK 147 (256)
T ss_pred HHHHHHHHHHhhCCCCCEEEEcCcHHHH-HHHHHhcc-CCCeEEEE-------CCHHHHHHHhhCCCCCEEEEECCEEeC
Confidence 3467999999999999999865555544 55555532 23456553 23455677765 33 5554421
Q ss_pred --cchHHH----Hhh--hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeeccccccccc
Q 006256 513 --INAISY----IIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHER 571 (653)
Q Consensus 513 --DsAv~~----iM~--~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~ 571 (653)
.+.++. .+. .+|+.|+||++|..++++...--...+--++-....-+|++|+..||...
T Consensus 148 ~~~~~~G~~a~~~l~~~~~D~afi~~~gi~~~~G~t~~~~~~~~k~~~~~~a~~~illaD~sKf~~~ 214 (256)
T PRK10434 148 KSASFHGQLAENAFEHFTFDKLFIGTDGIDLNAGVTTFNEVYTVSKAMCNAAREIILMADSSKFGRK 214 (256)
T ss_pred CCCeEECHHHHHHHHhCcCCEEEEcCceecCCCCcCCCCHHHHHHHHHHHHcCcEEEEECCcccCCc
Confidence 122222 233 69999999999998876654332344444455568888999999999743
No 23
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=97.33 E-value=0.0034 Score=60.90 Aligned_cols=123 Identities=17% Similarity=0.239 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhC-CCCEEEE-------
Q 006256 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRK-GLSCTYT------- 511 (653)
Q Consensus 440 a~~~Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~-GI~vT~I------- 511 (653)
..++|++.|+++|++|++|.-=+.|++. .+.+...+ .++++|+- - ....+.+|.+. ++.+.++
T Consensus 5 ~K~~IA~~A~~~I~~~~~Ifld~GtT~~-~la~~L~~-~~~ltVvT-n------sl~ia~~l~~~~~~~vi~~GG~~~~~ 75 (161)
T PF00455_consen 5 EKRAIARKAASLIEDGDTIFLDSGTTTL-ELAKYLPD-KKNLTVVT-N------SLPIANELSENPNIEVILLGGEVNPK 75 (161)
T ss_pred HHHHHHHHHHHhCCCCCEEEEECchHHH-HHHHHhhc-CCceEEEE-C------CHHHHHHHHhcCceEEEEeCCEEEcC
Confidence 3467999999999999998876666554 55555543 33555552 2 33456777765 4444332
Q ss_pred ----ccchHHHHhh--hccEEEEcceeEecC-CCeecccchHHHHHHHhhCCCCeeeeccccccccc
Q 006256 512 ----HINAISYIIH--EVTRVFLGASSVLSN-GTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHER 571 (653)
Q Consensus 512 ----~DsAv~~iM~--~Vd~VllGAdaIlaN-G~V~NKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~ 571 (653)
.....-..|. ++|+.|+|+++|..+ |-......-..+--+.-.+.--+|++|+..||...
T Consensus 76 ~~~~~G~~a~~~l~~~~~d~afi~~~gi~~~~G~~~~~~~~a~vk~~~~~~s~~~ill~D~sKf~~~ 142 (161)
T PF00455_consen 76 SLSFVGPIALEALRQFRFDKAFIGADGISEEGGLTTSDEEEAEVKRAMIENSKQVILLADSSKFGRN 142 (161)
T ss_pred CCcEECchHHHHHHhhccceEEecccEecCCCccccchHHHHHHHHHHHHhcCeEEEEeChhhcCCe
Confidence 1111112223 699999999999985 54445566666666666677789999999999654
No 24
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=97.29 E-value=0.003 Score=65.53 Aligned_cols=121 Identities=15% Similarity=0.088 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHh-CCCCEEEE-------
Q 006256 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-KGLSCTYT------- 511 (653)
Q Consensus 440 a~~~Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~-~GI~vT~I------- 511 (653)
..+.|++.|+++|.+|++|+.-+.|++. .+...... +.++|+. - +...+..|.+ .++.+.++
T Consensus 79 ~K~~IA~~Aa~~I~~g~~Ifld~GsT~~-~la~~L~~--~~ltVvT-n------sl~ia~~l~~~~~~~v~l~GG~~~~~ 148 (251)
T PRK13509 79 EKVRIAKAASQLCNPGESVVINCGSTAF-LLGRELCG--KPVQIIT-N------YLPLANYLIDQEHDSVIIMGGQYNKS 148 (251)
T ss_pred HHHHHHHHHHHhCCCCCEEEECCcHHHH-HHHHHhCC--CCeEEEe-C------CHHHHHHHHhCCCCEEEEECCeEcCC
Confidence 3467999999999999999877766665 45555532 3455552 2 3345666664 34444332
Q ss_pred ----ccchHHHHhh--hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeeccccccccc
Q 006256 512 ----HINAISYIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHER 571 (653)
Q Consensus 512 ----~DsAv~~iM~--~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~ 571 (653)
.... ...|. ++|+.|+||++|-.+|-.........+--.+-....-+|++|++.||...
T Consensus 149 ~~~~~G~~-~~~l~~~~~d~aFig~~gi~~~G~~~~~~~e~~~k~~~~~~s~~~illaDssKfg~~ 213 (251)
T PRK13509 149 QSITLSPQ-GSENSLYAGHWMFTSGKGLTADGLYKTDMLTAMAEQKMLSVVGKLVVLVDSSKIGER 213 (251)
T ss_pred cceeECHH-HHHHHhCcCCEEEECCCcCCCCcCCCCCHHHHHHHHHHHHHhCcEEEEEcccccCce
Confidence 1122 23444 58999999999987775444444444444444556778999999999643
No 25
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=97.17 E-value=0.0075 Score=63.31 Aligned_cols=121 Identities=16% Similarity=0.207 Sum_probs=79.0
Q ss_pred HHHHHHHHHHhccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHh-CCCCEEEEc-------
Q 006256 441 DRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-KGLSCTYTH------- 512 (653)
Q Consensus 441 ~~~Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~-~GI~vT~I~------- 512 (653)
.+.|++.|+++|.+||+|+-=+.|++. .+.+... ..+.++||. - +...+..|.. .++.+.++-
T Consensus 93 K~~IA~~Aa~~I~dgd~Ifld~GtT~~-~la~~L~-~~~~ltVvT-n------sl~ia~~l~~~~~~~v~llGG~~~~~~ 163 (269)
T PRK09802 93 KRSVAKAAVELIQPGHRVILDSGTTTF-EIARLMR-KHTDVIAMT-N------GMNVANALLEAEGVELLMTGGHLRRQS 163 (269)
T ss_pred HHHHHHHHHhhCCCCCEEEECCchHHH-HHHHhcC-cCCCeEEEe-C------CHHHHHHHHhCCCCEEEEECCEEecCC
Confidence 357999999999999999866655554 5555542 234567664 1 2345667764 466655431
Q ss_pred ----cchHHHHhh--hccEEEEcceeEecCCCeec-ccchHHHHHHHhhCCCCeeeecccccccc
Q 006256 513 ----INAISYIIH--EVTRVFLGASSVLSNGTVCS-RVGTACVAMVAYGFHIPVLVCCEAYKFHE 570 (653)
Q Consensus 513 ----DsAv~~iM~--~Vd~VllGAdaIlaNG~V~N-KiGT~~lAl~Ak~~~VPVyV~aetyKf~~ 570 (653)
....-..+. ++|+.|+||++|-.++++.. -.--..+--++-...--+|++|+..||..
T Consensus 164 ~~~~G~~a~~~l~~~~~d~afig~~gi~~~~G~t~~~~~ea~~kr~~i~~s~~~ill~D~sKf~~ 228 (269)
T PRK09802 164 QSFYGDQAEQSLQNYHFDMLFLGVDAIDLERGVSTHNEDEARLNRRMCEVAERIIVVTDSSKFNR 228 (269)
T ss_pred CceECHHHHHHHHhccCCEEEEcCceecCCCCcCCCCHHHHHHHHHHHHHcCcEEEEEeccccCC
Confidence 111222233 69999999999987766553 44445555555556677799999999964
No 26
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=97.04 E-value=0.012 Score=61.23 Aligned_cols=122 Identities=14% Similarity=0.155 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHh-CCCCEEEE-------
Q 006256 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-KGLSCTYT------- 511 (653)
Q Consensus 440 a~~~Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~-~GI~vT~I------- 511 (653)
..+.|++.|+++|.+|++|+.-+.|++. .+.+.... .+.++|+- .+...+..|.. .++.+.++
T Consensus 77 ~K~~IA~~Aa~~I~~g~tIflD~GtT~~-~la~~L~~-~~~ltVvT-------Nsl~ia~~l~~~~~~~villGG~~~~~ 147 (252)
T PRK10906 77 EKERIARKVASQIPNGATLFIDIGTTPE-AVAHALLN-HSNLRIVT-------NNLNVANTLMAKEDFRIILAGGELRSR 147 (252)
T ss_pred HHHHHHHHHHhhCCCCCEEEEcCcHHHH-HHHHHhcC-CCCcEEEE-------CcHHHHHHHhhCCCCEEEEECCEEecC
Confidence 3467999999999999999977766664 45555432 23455552 23345666663 45555432
Q ss_pred ccchHHH----Hhh--hccEEEEcceeEecCCCe-ecccchHHHHHHHhhCCCCeeeecccccccc
Q 006256 512 HINAISY----IIH--EVTRVFLGASSVLSNGTV-CSRVGTACVAMVAYGFHIPVLVCCEAYKFHE 570 (653)
Q Consensus 512 ~DsAv~~----iM~--~Vd~VllGAdaIlaNG~V-~NKiGT~~lAl~Ak~~~VPVyV~aetyKf~~ 570 (653)
..+.++. .+. .+|+.|+||+.|-.++++ .+-..-+.+--.+-....-+|++|++.||..
T Consensus 148 ~~~~~G~~a~~~l~~~~~d~afi~~~Gi~~~~G~t~~~~~ea~~k~~~~~~a~~~illaD~sKf~~ 213 (252)
T PRK10906 148 DGGIIGEATLDFISQFRLDFGILGISGIDSDGSLLEFDYHEVRTKRAIIENSRHVMLVVDHSKFGR 213 (252)
T ss_pred CCccCCHHHHHHHHhccCCEEEEcCCEECCCCCcCCCCHHHHHHHHHHHHhcCcEEEEEccchhCC
Confidence 1222322 222 699999999999976554 4444555555555556667899999999964
No 27
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=96.72 E-value=0.031 Score=57.75 Aligned_cols=121 Identities=13% Similarity=0.149 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHh-CCCCEEEE-------
Q 006256 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-KGLSCTYT------- 511 (653)
Q Consensus 440 a~~~Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~-~GI~vT~I------- 511 (653)
..+.|++.|+++|++||+|+.=+.|++. .+.+...+ +.++|+. -+...+..|.. .++.+.++
T Consensus 79 ~K~~IA~~Aa~lI~~gd~Ifld~GtT~~-~l~~~L~~--~~ltVvT-------Ns~~ia~~l~~~~~~~vil~GG~~~~~ 148 (240)
T PRK10411 79 HKADIAREALAWIEEGMVIALDASSTCW-YLARQLPD--INIQVFT-------NSHPICQELGKRERIQLISSGGTLERK 148 (240)
T ss_pred HHHHHHHHHHHhCCCCCEEEEcCcHHHH-HHHHhhCC--CCeEEEe-------CCHHHHHHHhcCCCCEEEEECCEEeCC
Confidence 3467999999999999998866655554 55555532 2455553 23345566653 45555332
Q ss_pred ----ccchHHHHhh--hccEEEEcceeEecCCCeec-ccchHHHHHHHhhCCCCeeeecccccccc
Q 006256 512 ----HINAISYIIH--EVTRVFLGASSVLSNGTVCS-RVGTACVAMVAYGFHIPVLVCCEAYKFHE 570 (653)
Q Consensus 512 ----~DsAv~~iM~--~Vd~VllGAdaIlaNG~V~N-KiGT~~lAl~Ak~~~VPVyV~aetyKf~~ 570 (653)
.....-..+. ++|++|+||++|..+|++.. -.=.+.+--.+-....-+|++|++.||..
T Consensus 149 ~~~~~G~~a~~~l~~~~~d~afis~~gi~~~~G~~~~~~~ea~~k~~~~~~a~~~ill~D~sKf~~ 214 (240)
T PRK10411 149 YGCYVNPSLISQLKSLEIDLFIFSCEGIDSSGALWDSNAINADYKSMLLKRAAQSLLLIDKSKFNR 214 (240)
T ss_pred CCceECHHHHHHHHhcCCCEEEEeceeECCCCCcccCCHHHHHHHHHHHHHhCcEEEEEeccccCC
Confidence 1111222233 69999999999987666554 44445555555566777899999999964
No 28
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=95.83 E-value=0.14 Score=53.48 Aligned_cols=123 Identities=17% Similarity=0.213 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhC-CCCEEE--------
Q 006256 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRK-GLSCTY-------- 510 (653)
Q Consensus 440 a~~~Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~-GI~vT~-------- 510 (653)
....|++.|+++|++|++|+--+.|++. .+..... ....++|+. -+...+..|... ++.+.+
T Consensus 77 eK~~IA~~Aa~lI~~g~~ifld~GTT~~-~la~~L~-~~~~ltviT-------Nsl~ia~~l~~~~~~~vi~~GG~~~~~ 147 (253)
T COG1349 77 EKRAIAKAAATLIEDGDTIFLDAGTTTL-ALARALP-DDNNLTVIT-------NSLNIAAALLEKPNIEVILLGGTVRKK 147 (253)
T ss_pred HHHHHHHHHHhhCCCCCEEEECCCcHHH-HHHHHhC-cCCCeEEEe-------CCHHHHHHHHhCCCCeEEEeCcEEEcC
Confidence 3457999999999999999877776665 4444443 233366663 244556666665 333311
Q ss_pred ---EccchHHHHhh--hccEEEEcceeEecCCCeeccc-chHHHHHHHhhCCCCeeeeccccccccc
Q 006256 511 ---THINAISYIIH--EVTRVFLGASSVLSNGTVCSRV-GTACVAMVAYGFHIPVLVCCEAYKFHER 571 (653)
Q Consensus 511 ---I~DsAv~~iM~--~Vd~VllGAdaIlaNG~V~NKi-GT~~lAl~Ak~~~VPVyV~aetyKf~~~ 571 (653)
+.....-..+. ++|+.|+|+++|-.++++...- .-+.+.-.+-....-+|+++.+.||...
T Consensus 148 ~~~~~G~~a~~~l~~~~~d~aFig~~gi~~~~g~~~~~~~ea~~k~~~~~~a~~~~ll~D~sKf~~~ 214 (253)
T COG1349 148 SGSFVGPLAEEFLRQFNFDKAFIGADGIDLEGGLTTFNEEEAEVKRAMIEAAREVILLADSSKFGRV 214 (253)
T ss_pred CCeEEcHHHHHHHHhCcccEEEEeccccCCCCCcCcCCHHHHHHHHHHHHhhCcEEEEEcCCccCCc
Confidence 11122223333 6999999999999887766554 4444555555667888999999999754
No 29
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional
Probab=95.58 E-value=0.13 Score=53.51 Aligned_cols=121 Identities=13% Similarity=0.072 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHh-CCCCEEEEc-------
Q 006256 441 DRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-KGLSCTYTH------- 512 (653)
Q Consensus 441 ~~~Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~-~GI~vT~I~------- 512 (653)
.+.|++.|+++|.+|++|+.=+.|+++ .+.+.... .+.++|+- - +...+.+|.+ .++.+.++-
T Consensus 79 K~~IA~~Aa~lI~~g~tIflD~GtT~~-~la~~L~~-~~~ltvvT-n------sl~i~~~l~~~~~~~villGG~~~~~~ 149 (252)
T PRK10681 79 KRRAAQLAATLVEPNQTLFFDCGTTTP-WIIEAIDN-ELPFTAVC-Y------SLNTFLALQEKPHCRAILCGGEFHASN 149 (252)
T ss_pred HHHHHHHHHhhcCCCCEEEEECCccHH-HHHHhcCC-CCCeEEEE-C------CHHHHHHHhhCCCCEEEEECcEEecCc
Confidence 467999999999999999987777766 44444422 22455553 2 2334566654 345544321
Q ss_pred cchHH----HHhh--hccEEEEcceeEecCCCe-ecccchHHHHHHHhhCCCCeeeecccccccc
Q 006256 513 INAIS----YIIH--EVTRVFLGASSVLSNGTV-CSRVGTACVAMVAYGFHIPVLVCCEAYKFHE 570 (653)
Q Consensus 513 DsAv~----~iM~--~Vd~VllGAdaIlaNG~V-~NKiGT~~lAl~Ak~~~VPVyV~aetyKf~~ 570 (653)
.+.++ ..+. ++|+.|+||++|-..+++ ..-.--+.+.-+.-....-+|++|+..||..
T Consensus 150 ~~~~G~~~~~~l~~~~~D~afig~~gi~~~~G~~~~~~~ea~vk~~~~~~a~~~illaD~sKf~~ 214 (252)
T PRK10681 150 AIFKPLDFQQTLDNICPDIAFYSAAGVHVSKGATCFNLEELPVKHWAMAMAQKHVLVVDHSKFGK 214 (252)
T ss_pred ceeeCHHHHHHHHhhCCCEEEEeCceecCCCCcCCCCHHHHHHHHHHHHhhCcEEEEEcccccCc
Confidence 11111 2223 699999999999876554 3444444554444455667899999999964
No 30
>PLN02384 ribose-5-phosphate isomerase
Probab=95.06 E-value=0.35 Score=51.14 Aligned_cols=116 Identities=19% Similarity=0.200 Sum_probs=78.7
Q ss_pred HHHHHHHHhccCCCEEEEeCChHHHHHHHHHHHHcCCe--eE-EEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHH
Q 006256 443 VIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQ--FR-VVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYI 519 (653)
Q Consensus 443 ~Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~--f~-ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~i 519 (653)
..+..|+++|++|.+ +=.|.++|+.-+|++..++.+. ++ +.++-|. .+....+.+.||+++-+.+
T Consensus 38 ~aA~~A~~~V~~gmv-VGLGTGSTv~~~I~~La~r~~~~~l~~I~~VpTS-----~~T~~~a~~~GIpl~~l~~------ 105 (264)
T PLN02384 38 IAAYKAVEFVESGMV-LGLGTGSTAKHAVDRIGELLRQGKLKNIIGIPTS-----KKTHEQAVSLGIPLSDLDS------ 105 (264)
T ss_pred HHHHHHHHhccCCCE-EEecchHHHHHHHHHHHHhhhhccccceEEEcCc-----HHHHHHHHHcCCcEecccc------
Confidence 356677889999876 6778888887777776654332 33 5544332 2334556678999776654
Q ss_pred hhhccEEEEcceeEecCCCeecccchHHHH--HHHhhCCCCeeeeccccccccc
Q 006256 520 IHEVTRVFLGASSVLSNGTVCSRVGTACVA--MVAYGFHIPVLVCCEAYKFHER 571 (653)
Q Consensus 520 M~~Vd~VllGAdaIlaNG~V~NKiGT~~lA--l~Ak~~~VPVyV~aetyKf~~~ 571 (653)
..++|..|=|||-|-.|+.++--=|...+- ++|.. ..-|+++++..|+.++
T Consensus 106 v~~iDiaiDGADEId~~lnlIKGGGgallrEKivA~~-A~~~IiI~DesK~V~~ 158 (264)
T PLN02384 106 HPVVDLAIDGADEVDPNLNLVKGRGGSLLREKMIEGA-CKKFVVIVDESKLVKH 158 (264)
T ss_pred CCcccEEEECCceeCCCCCEEEeCcHHHHHHHHHHHh-cCeEEEEEeCcceecc
Confidence 457999999999999998877666644322 22222 2368999999999864
No 31
>PRK13978 ribose-5-phosphate isomerase A; Provisional
Probab=93.96 E-value=0.91 Score=47.11 Aligned_cols=117 Identities=15% Similarity=0.151 Sum_probs=78.4
Q ss_pred HHHHHHHHHhccCCCEEEEeCChHHHHHHHHHHHHcCC--eeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHH
Q 006256 442 RVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGK--QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYI 519 (653)
Q Consensus 442 ~~Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk--~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~i 519 (653)
+..++.|+++|++|.+ +=.|.++|+..+|++..++.+ .+++.++-|. .+....+.+.||+..-+.+
T Consensus 9 ~~aa~~A~~~V~~gmv-vGLGTGSTv~~~i~~L~~~~~~~~l~i~~VptS-----~~t~~~a~~~Gipl~~l~~------ 76 (228)
T PRK13978 9 LMTLNDVLSQINGDMT-LGIGTGSTMELLLPQMAQLIKERGYNITGVCTS-----NKIAFLAKELGIKICEIND------ 76 (228)
T ss_pred HHHHHHHHHhCCCCCE-EEeCchHHHHHHHHHHHHHhhccCccEEEEeCc-----HHHHHHHHHcCCcEechhh------
Confidence 3466778899999876 678888998777776654322 2455554332 2233455678999766544
Q ss_pred hhhccEEEEcceeEecCCCeecccchHHHH--HHHhhCCCCeeeeccccccccc
Q 006256 520 IHEVTRVFLGASSVLSNGTVCSRVGTACVA--MVAYGFHIPVLVCCEAYKFHER 571 (653)
Q Consensus 520 M~~Vd~VllGAdaIlaNG~V~NKiGT~~lA--l~Ak~~~VPVyV~aetyKf~~~ 571 (653)
..++|..|=|||-|-.|+.++--=|...+= ++|.. ..-|++++...|+.++
T Consensus 77 ~~~iDiaiDGADevd~~lnlIKGgGgal~rEKiva~~-A~~~iii~D~sK~v~~ 129 (228)
T PRK13978 77 VDHIDLAIDGADEVDPSLNIIKGGGGALFREKVIDEM-ASRFVVVVDETKIVQY 129 (228)
T ss_pred CCceeEEEecCceecCCccEEecCcHHHHHHHHHHHh-cCcEEEEEeCcceecc
Confidence 257999999999999999877555533211 12222 3378999999999864
No 32
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=91.15 E-value=1.3 Score=49.20 Aligned_cols=116 Identities=25% Similarity=0.316 Sum_probs=77.1
Q ss_pred HHHHHHHHHHH----HhccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHH-HHHhCCCCEEE---
Q 006256 439 LADRVIVKHAV----TKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLR-RLVRKGLSCTY--- 510 (653)
Q Consensus 439 ~a~~~Ia~~a~----~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~-eL~~~GI~vT~--- 510 (653)
.|+++|++|.- .+|...|++||-|++.+++-+|...+.-|.+ |+--||.+- +-. .-.-.||.|.|
T Consensus 107 ~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe~~i~~LA~p~aN----ILlPrPGfp---~Y~~~a~~~~lEVR~ydl 179 (447)
T KOG0259|consen 107 PARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIELAISSLANPGAN----ILLPRPGFP---LYDTRAIYSGLEVRYYDL 179 (447)
T ss_pred HHHHHHHHHhhcCCCCccCcCceEEeccchHHHHHHHHHhcCCCCc----eecCCCCCc---hHHHhhhhcCceeEeecc
Confidence 35556666633 3566789999999999999888877654444 233567652 221 12335777766
Q ss_pred -------EccchHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 511 -------THINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 511 -------I~DsAv~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
|....+-++.-+=++.++=-.==-.+|.|+++-=--.+|-+|+.++++|+.
T Consensus 180 LPe~~weIDL~~veal~DENT~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIa 237 (447)
T KOG0259|consen 180 LPEKDWEIDLDGVEALADENTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIA 237 (447)
T ss_pred cCcccceechHHHHHhhccCeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEe
Confidence 344566666665444444322234679999999999999999999999873
No 33
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=90.42 E-value=3.6 Score=42.75 Aligned_cols=118 Identities=15% Similarity=0.148 Sum_probs=82.8
Q ss_pred HHHHHHHHHhccCCCEEEEeCChHHHHHHHHHHHHcCC-eeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHh
Q 006256 442 RVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGK-QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYII 520 (653)
Q Consensus 442 ~~Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk-~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM 520 (653)
+..+..|++++.+| .|+=.|.+||+..+|+.+.+..+ .+.+..+-|. .+....|.+.||+++.+.+ .
T Consensus 8 ~~aa~~A~~~v~~g-mviGlGTGST~~~fI~~Lg~~~~~e~~i~~V~TS-----~~t~~l~~~~GI~v~~l~~------~ 75 (227)
T COG0120 8 KAAAKAALEYVKDG-MVIGLGTGSTAAYFIEALGRRVKGELDIGGVPTS-----FQTEELARELGIPVSSLNE------V 75 (227)
T ss_pred HHHHHHHHHHhcCC-CEEEEcCcHHHHHHHHHHHHhhccCccEEEEeCC-----HHHHHHHHHcCCeecCccc------c
Confidence 34567888999884 56678888899899988763222 1455544432 3445677889998877654 3
Q ss_pred hhccEEEEcceeEecCCCeecccchHHHHH-HHhhCCCCeeeeccccccccc
Q 006256 521 HEVTRVFLGASSVLSNGTVCSRVGTACVAM-VAYGFHIPVLVCCEAYKFHER 571 (653)
Q Consensus 521 ~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl-~Ak~~~VPVyV~aetyKf~~~ 571 (653)
..+|..|=|||-|-.++.++--=|.+.+=- +-.+...-|+|+++..|+.+.
T Consensus 76 ~~lDl~iDGADEvd~~~~lIKGGGgAl~rEKIva~~ak~~IvIvDesKlV~~ 127 (227)
T COG0120 76 DSLDLAIDGADEVDPNLNLIKGGGGALLREKIVASAAKRFIVIVDESKLVEV 127 (227)
T ss_pred CccceEeecccccCCCCCEEccChHHHHHHHHHHHhcCeEEEEEeCccchhh
Confidence 469999999999999988776666654321 223345678999999999665
No 34
>COG2057 AtoA Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism]
Probab=87.49 E-value=1.3 Score=45.88 Aligned_cols=101 Identities=21% Similarity=0.253 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHhccCCCE-EEEeCChHHHHHHHHHHHH---cCCeeEEEEeCCCCCchHHHHHHHHHhC-CCCEEE----
Q 006256 440 ADRVIVKHAVTKIRDGDV-LLTYGSSSAVEMILQHAHE---LGKQFRVVIVDSRPKHEGKLLLRRLVRK-GLSCTY---- 510 (653)
Q Consensus 440 a~~~Ia~~a~~~I~dGdv-ILT~g~Ss~Ve~vL~~A~e---~gk~f~ViV~ESRP~~EG~~La~eL~~~-GI~vT~---- 510 (653)
.++.|+..+++.|+||+. .|=+|-=+.|..++.+-.+ +..+ -++-+..-|.. |.. -..|... +-+|+.
T Consensus 7 ~~e~ia~r~A~el~dG~~VnlGIGlPtlvan~~~~~~~~~~~sen-g~Lg~g~~p~~-~~~-d~~linaG~~~vt~~pg~ 83 (225)
T COG2057 7 EREMIAKRAARELKDGDYVNLGIGLPTLVANYAPEGMNVLLQSEN-GLLGVGPAPLP-GEE-DADLINAGKQPVTALPGA 83 (225)
T ss_pred hHHHHHHHHHHhccCCCEEEecCCchHHhHhhcccccceEEecCc-eeEEecCCCCC-CCC-CcchhhCCCceeEecCCc
Confidence 556788889999999975 4556766777565542100 0011 12222333322 111 1234444 356666
Q ss_pred -EccchHHHHhh---hccEEEEcceeEecCCCeeccc
Q 006256 511 -THINAISYIIH---EVTRVFLGASSVLSNGTVCSRV 543 (653)
Q Consensus 511 -I~DsAv~~iM~---~Vd~VllGAdaIlaNG~V~NKi 543 (653)
+.|++.++.|- ++|.-||||--|-.+|++.|-+
T Consensus 84 ~~f~sa~sf~~irGGhidv~vLGa~QVd~~Gnlanw~ 120 (225)
T COG2057 84 SVFDSADSFAMIRGGHIDVAVLGAAQVDEYGNLANWM 120 (225)
T ss_pred eEEchHHHHHHHhCCceEEEEecceeecccCceeeee
Confidence 67888877775 7999999999999999999864
No 35
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=85.57 E-value=13 Score=41.57 Aligned_cols=141 Identities=16% Similarity=0.198 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC---------CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchH
Q 006256 424 TLHSDIERFINEKIILADRVIVKHAVTKIRDG---------DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEG 494 (653)
Q Consensus 424 ~L~e~I~~fi~E~i~~a~~~Ia~~a~~~I~dG---------dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG 494 (653)
.+.+..+.|.+. +...+...+..+.+.+.+. -.|..+.-...+++...=+..+-+. +|.++-..=+.--
T Consensus 183 ~~~~~~~~Y~~~-lm~p~~~~v~~~l~~~~~l~i~~IaP~HG~i~~~~~~~i~~~Y~~W~~~~~~~-~V~l~Y~smyg~T 260 (388)
T COG0426 183 ELLPDMRKYYAN-LMAPNARLVLWALKKIKLLKIEMIAPSHGPIWRGNPKEIVEAYRDWAEGQPKG-KVDLIYDSMYGNT 260 (388)
T ss_pred HHHHHHHHHHHH-hhcccHHHHHHHHhhhcccCccEEEcCCCceeeCCHHHHHHHHHHHHccCCcc-eEEEEEecccCCH
Confidence 555666666655 5556667777777777652 1233333345555544333322233 3444433333333
Q ss_pred HHH----HHHHHhCCCCEEEEc--cchHHHHhh---hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeeccc
Q 006256 495 KLL----LRRLVRKGLSCTYTH--INAISYIIH---EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (653)
Q Consensus 495 ~~L----a~eL~~~GI~vT~I~--DsAv~~iM~---~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~aet 565 (653)
..| ++.|.+.|+.|.++- ++..+.++. +++.+++|.-.+ |++..-++++..--+.+..++-...++.++
T Consensus 261 ~~ma~aiaegl~~~gv~v~~~~~~~~~~~eI~~~i~~a~~~vvGsPT~--~~~~~p~i~~~l~~v~~~~~~~k~~~vfgS 338 (388)
T COG0426 261 EKMAQAIAEGLMKEGVDVEVINLEDADPSEIVEEILDAKGLVVGSPTI--NGGAHPPIQTALGYVLALAPKNKLAGVFGS 338 (388)
T ss_pred HHHHHHHHHHhhhcCCceEEEEcccCCHHHHHHHHhhcceEEEecCcc--cCCCCchHHHHHHHHHhccCcCceEEEEec
Confidence 333 477889999998874 455788877 689999999887 577999999999999998887666777777
Q ss_pred ccc
Q 006256 566 YKF 568 (653)
Q Consensus 566 yKf 568 (653)
|=-
T Consensus 339 ~GW 341 (388)
T COG0426 339 YGW 341 (388)
T ss_pred cCC
Confidence 633
No 36
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=85.21 E-value=3.6 Score=36.69 Aligned_cols=92 Identities=16% Similarity=0.269 Sum_probs=61.7
Q ss_pred EEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHh-----hhccEEEEccee
Q 006256 458 LLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYII-----HEVTRVFLGASS 532 (653)
Q Consensus 458 ILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM-----~~Vd~VllGAda 532 (653)
|+..|++..-..+++...+.+ ..|+++|..|.. .+.+.+.|+++.+. |..=-..+ .+++.||+..+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~--~~vvvid~d~~~-----~~~~~~~~~~~i~g-d~~~~~~l~~a~i~~a~~vv~~~~- 71 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG--IDVVVIDRDPER-----VEELREEGVEVIYG-DATDPEVLERAGIEKADAVVILTD- 71 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT--SEEEEEESSHHH-----HHHHHHTTSEEEES--TTSHHHHHHTTGGCESEEEEESS-
T ss_pred eEEEcCCHHHHHHHHHHHhCC--CEEEEEECCcHH-----HHHHHhcccccccc-cchhhhHHhhcCccccCEEEEccC-
Confidence 577899887767777776633 678888887643 77888999876664 33322233 36788877765
Q ss_pred EecCCCeecccchHHHHHHHhhCC--CCeeeecccc
Q 006256 533 VLSNGTVCSRVGTACVAMVAYGFH--IPVLVCCEAY 566 (653)
Q Consensus 533 IlaNG~V~NKiGT~~lAl~Ak~~~--VPVyV~aety 566 (653)
+...+..+++.||.++ +++++.+...
T Consensus 72 --------~d~~n~~~~~~~r~~~~~~~ii~~~~~~ 99 (116)
T PF02254_consen 72 --------DDEENLLIALLARELNPDIRIIARVNDP 99 (116)
T ss_dssp --------SHHHHHHHHHHHHHHTTTSEEEEEESSH
T ss_pred --------CHHHHHHHHHHHHHHCCCCeEEEEECCH
Confidence 6677889999999843 5666655443
No 37
>PRK04311 selenocysteine synthase; Provisional
Probab=80.99 E-value=26 Score=39.99 Aligned_cols=114 Identities=16% Similarity=0.114 Sum_probs=60.3
Q ss_pred HHHHHhccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCC--chHHHHHHHHHhCCCCEEEEcc-c-----hHH
Q 006256 446 KHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPK--HEGKLLLRRLVRKGLSCTYTHI-N-----AIS 517 (653)
Q Consensus 446 ~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~--~EG~~La~eL~~~GI~vT~I~D-s-----Av~ 517 (653)
+..++++...+.++|-+.+.++..+| .+...| -+|+|.+..-+ ....++.+.+...|+.+.++.. + .+.
T Consensus 134 ~~lA~l~Gae~a~vv~sgtaAl~l~l-~~l~~G--deVIvs~~e~~~~ggs~~i~~~~~~~G~~l~~v~~~~~t~~~dle 210 (464)
T PRK04311 134 ALLCALTGAEDALVVNNNAAAVLLAL-NALAAG--KEVIVSRGELVEIGGAFRIPDVMRQAGARLVEVGTTNRTHLRDYE 210 (464)
T ss_pred HHHHHHhCCCeEEEECCHHHHHHHHH-HHhCCC--CEEEEcchhhhhcCcchhhHHHHHHCCcEEEEECCCCCCCHHHHH
Confidence 34444554345666666666675545 444333 47888654222 1223454567788998877742 1 222
Q ss_pred HHhh-hccEEEEcceeEe-cCCCeecccchHHHHHHHhhCCCCeeeec
Q 006256 518 YIIH-EVTRVFLGASSVL-SNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (653)
Q Consensus 518 ~iM~-~Vd~VllGAdaIl-aNG~V~NKiGT~~lAl~Ak~~~VPVyV~a 563 (653)
..+. +..+|++-..+-+ -.| ....+--..++-+||.||+|++|=+
T Consensus 211 ~aI~~~TklV~~vh~sN~~i~G-~~~~~dl~eI~~lak~~gi~vivD~ 257 (464)
T PRK04311 211 QAINENTALLLKVHTSNYRIEG-FTKEVSLAELAALGKEHGLPVVYDL 257 (464)
T ss_pred HhcCccCeEEEEEcCCCccccc-cCCcCCHHHHHHHHHHcCCeEEEEC
Confidence 3333 3333333222111 012 1122345668889999999999855
No 38
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=80.93 E-value=24 Score=30.50 Aligned_cols=93 Identities=20% Similarity=0.277 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHcCCeeEEEEeCCCCCc-----------hHHHHHHHHH----hCCCCEEEE--ccchHHHHhh-----hc
Q 006256 466 AVEMILQHAHELGKQFRVVIVDSRPKH-----------EGKLLLRRLV----RKGLSCTYT--HINAISYIIH-----EV 523 (653)
Q Consensus 466 ~Ve~vL~~A~e~gk~f~ViV~ESRP~~-----------EG~~La~eL~----~~GI~vT~I--~DsAv~~iM~-----~V 523 (653)
++...+..|...+..+.++.+...+.. +..+....+. ..|+++++. .......++. ++
T Consensus 15 ~l~~a~~~a~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 94 (130)
T cd00293 15 ALRWAARLARRLGAELVLLHVVDPPPSSAAELAELLEEEARALLEALREALAEAGVKVETVVLEGDPAEAILEAAEELGA 94 (130)
T ss_pred HHHHHHHHHHhcCCEEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHcCC
Confidence 444444555556777776655443322 3444444433 368887654 2332333333 57
Q ss_pred cEEEEcceeEecCCCeec-ccchHHHHHHHhhCCCCeeee
Q 006256 524 TRVFLGASSVLSNGTVCS-RVGTACVAMVAYGFHIPVLVC 562 (653)
Q Consensus 524 d~VllGAdaIlaNG~V~N-KiGT~~lAl~Ak~~~VPVyV~ 562 (653)
|+|++|+..- +.... ..|+.. --+.+..++||+++
T Consensus 95 dlvvig~~~~---~~~~~~~~~~~~-~~ll~~~~~pvliv 130 (130)
T cd00293 95 DLIVMGSRGR---SGLRRLLLGSVA-ERVLRHAPCPVLVV 130 (130)
T ss_pred CEEEEcCCCC---CccceeeeccHH-HHHHhCCCCCEEeC
Confidence 9999998653 22222 334433 33446688999874
No 39
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=80.72 E-value=69 Score=36.53 Aligned_cols=114 Identities=13% Similarity=0.080 Sum_probs=61.5
Q ss_pred HHHHHhccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCC-C-CchHHHHHHHHHhCCCCEEEEcc---c---hHH
Q 006256 446 KHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSR-P-KHEGKLLLRRLVRKGLSCTYTHI---N---AIS 517 (653)
Q Consensus 446 ~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESR-P-~~EG~~La~eL~~~GI~vT~I~D---s---Av~ 517 (653)
+..++++...+.+++-+...++..+| .+...| -+|+|.+.. + +....++.+.+...|+.+.++.. . .+.
T Consensus 129 ~~lA~l~gae~alvv~sg~aAi~l~l-~~l~~G--deVIvs~~e~v~~ggs~~i~~~~~~~G~~~~~v~~~~~~~l~dle 205 (454)
T TIGR00474 129 GLLCELTGAEDALVVNNNAAAVLLAL-NTLAKG--KEVIVSRGELVEIGGSFRIPDVMEQSGAKLVEVGTTNRTHLKDYE 205 (454)
T ss_pred HHHHHHhCCCcEEEECCHHHHHHHHH-HHhCCc--CEEEECCChhhhhcchhhHHHHHHHcCCEEEEeCCCCCCCHHHHH
Confidence 33444554345665555555665445 444333 478887643 2 22334555667788999988832 1 122
Q ss_pred HHhh-hccEEEEcceeEec-CCCeecccchHHHHHHHhhCCCCeeeec
Q 006256 518 YIIH-EVTRVFLGASSVLS-NGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (653)
Q Consensus 518 ~iM~-~Vd~VllGAdaIla-NG~V~NKiGT~~lAl~Ak~~~VPVyV~a 563 (653)
..+. +..+|++-..+.+. +| ....+-...++-+||.||++++|=+
T Consensus 206 ~aI~~~T~lv~~~h~sN~~~~G-~~~~~dl~~I~~la~~~g~~vivD~ 252 (454)
T TIGR00474 206 DAITENTALLLKVHTSNYRIVG-FTEEVSIAELVALGREHGLPVMEDL 252 (454)
T ss_pred HhcCcCCEEEEEEccCcccccC-CCCCCCHHHHHHHHHHcCCeEEEEC
Confidence 2333 33344433222221 23 1123446678899999999999854
No 40
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=78.64 E-value=4.5 Score=42.64 Aligned_cols=106 Identities=24% Similarity=0.223 Sum_probs=70.6
Q ss_pred EeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCC----EEEEccchHHHHhhhccEEEEcceeEec
Q 006256 460 TYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLS----CTYTHINAISYIIHEVTRVFLGASSVLS 535 (653)
Q Consensus 460 T~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~----vT~I~DsAv~~iM~~Vd~VllGAdaIla 535 (653)
|=|++-+=..+++.+.++|...+|.+.+-++...- ...+...++. +-+....++..+|+.||.||-=|..+..
T Consensus 3 TGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~---~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~~~ 79 (280)
T PF01073_consen 3 TGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKF---LKDLQKSGVKEYIQGDITDPESLEEALEGVDVVFHTAAPVPP 79 (280)
T ss_pred EcCCcHHHHHHHHHHHHCCCceEEEEccccccccc---chhhhcccceeEEEeccccHHHHHHHhcCCceEEEeCccccc
Confidence 33444333455666677786667777775554422 2233333432 3333345778889999999988887777
Q ss_pred CCC-------eecccchHHHHHHHhhCCCCeeeecccccc
Q 006256 536 NGT-------VCSRVGTACVAMVAYGFHIPVLVCCEAYKF 568 (653)
Q Consensus 536 NG~-------V~NKiGT~~lAl~Ak~~~VPVyV~aetyKf 568 (653)
.|. -+|--||-.|--+|+.++|+.+|.+.+.-.
T Consensus 80 ~~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVytSS~~v 119 (280)
T PF01073_consen 80 WGDYPPEEYYKVNVDGTRNVLEAARKAGVKRLVYTSSISV 119 (280)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCcce
Confidence 662 346699999999999999999998877643
No 41
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=78.10 E-value=22 Score=38.78 Aligned_cols=137 Identities=12% Similarity=0.079 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEeCChHHHHHHHHHHHHcCC-------------eeEEE
Q 006256 418 ESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGK-------------QFRVV 484 (653)
Q Consensus 418 ~~eaK~~L~e~I~~fi~E~i~~a~~~Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk-------------~f~Vi 484 (653)
..+..+.+.+.++.|... ....+.+.+..+++..-..+++|-|.+.++..+|..+.+.|. ...|+
T Consensus 26 ~~~v~~a~~~~~~~~~~~--~~~~~~~~~~~a~~~g~~~~~~~~g~t~al~~al~al~~~Gd~~~~~~~~~s~~~~~eVi 103 (363)
T TIGR01437 26 SDEVADAQKRGAQNYFEI--KELVNKTGEYIANLLGVEDAVIVSSASAGIAQSVAAVITRGNRYLVENLHDSKIEVNEVV 103 (363)
T ss_pred CHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHHhhCCCeEEEEcCHHHHHHHHHHHHhcCCCcchhhcccccccccceEE
Confidence 344444455544444321 112233444555555444678888888888777776665554 23677
Q ss_pred EeCCCCCchHH--HHHHHHHhCCCCEEEEc------cchHHHHhh-hccEEEEcceeEecCCCeecccchHHHHHHHhhC
Q 006256 485 IVDSRPKHEGK--LLLRRLVRKGLSCTYTH------INAISYIIH-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGF 555 (653)
Q Consensus 485 V~ESRP~~EG~--~La~eL~~~GI~vT~I~------DsAv~~iM~-~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~ 555 (653)
+ .+|.+... .+..-+...|....++. ...+...+. +...+++-..--...|.+.. + -.++-+||.|
T Consensus 104 ~--~~~~~~~~~~~~~~~~~~~g~~~v~v~~~~~~d~~~le~ai~~~t~ai~~v~~~~~~~g~~~~-~--~~i~~~a~~~ 178 (363)
T TIGR01437 104 L--PKGHNVDYGAPVETMVRLGGGKVVEAGYANECSAEQLEAAITEKTAAILYIKSHHCVQKSMLS-V--EDAAQVAQEH 178 (363)
T ss_pred E--ECccchhcCCchHHHHHhcCCeEEEEcCCCCCCHHHHHHhcChhceEEEEEecCCCCcCCcCC-H--HHHHHHHHHc
Confidence 6 44544321 12233444676555542 122333333 33323211000012233333 2 4578899999
Q ss_pred CCCeee
Q 006256 556 HIPVLV 561 (653)
Q Consensus 556 ~VPVyV 561 (653)
|+||+|
T Consensus 179 gi~viv 184 (363)
T TIGR01437 179 NLPLIV 184 (363)
T ss_pred CCeEEE
Confidence 999976
No 42
>KOG3075 consensus Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=77.56 E-value=14 Score=39.00 Aligned_cols=117 Identities=16% Similarity=0.071 Sum_probs=80.4
Q ss_pred HHHHHHHHhccCCCEEEEeCChHHHHHHHHHH---HHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHH
Q 006256 443 VIVKHAVTKIRDGDVLLTYGSSSAVEMILQHA---HELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYI 519 (653)
Q Consensus 443 ~Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A---~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~i 519 (653)
.-+.++.+....+-.|+=.|.+++|...+... +.++..-+|+++-+ +.+-+.++.+.||++.+....
T Consensus 30 ~Aa~~avd~~~k~g~ViGiGsGstv~~~v~~i~q~l~~~~l~~vvgVPt-----s~~s~q~~~~~gi~l~~~d~h----- 99 (261)
T KOG3075|consen 30 LAAYKAVDNYVKNGMVIGIGSGSTVVYAVDRIGQLLFDGDLGNVVGVPT-----SFRSAQLALEYGIPLSDLDSH----- 99 (261)
T ss_pred HHHhhhhhhhccCCeEEEecCccHHHHHHHHHHHHhcCCCcCceEeccc-----chhhHHHHHhcCCccccCCCC-----
Confidence 34556666665566777888887766655555 44566666776544 445567888999999887664
Q ss_pred hhhccEEEEcceeEecCCCeecccchHHH-HHHHhhCCCCeeeecccccccc
Q 006256 520 IHEVTRVFLGASSVLSNGTVCSRVGTACV-AMVAYGFHIPVLVCCEAYKFHE 570 (653)
Q Consensus 520 M~~Vd~VllGAdaIlaNG~V~NKiGT~~l-Al~Ak~~~VPVyV~aetyKf~~ 570 (653)
+.+|+.|=|||-+-.|..++---|-... -.+=-.....|||++...|+..
T Consensus 100 -p~iDlaidgADEvd~nln~ikggGg~l~qEk~v~~~akkfiviad~~k~~~ 150 (261)
T KOG3075|consen 100 -PVIDLAIDGADEVDENLNLIKGGGGCLLQEKDVEGAAKKFIVIADSRKGSK 150 (261)
T ss_pred -ceeEEEecCchhhCcCcceEEeccchhhHHHHHHHhhhceEEEeeccccch
Confidence 3799999999999999987755554321 1222223466899999999983
No 43
>PRK05973 replicative DNA helicase; Provisional
Probab=75.64 E-value=53 Score=34.36 Aligned_cols=113 Identities=13% Similarity=0.099 Sum_probs=59.2
Q ss_pred ccCCCEEEEeCCh-----HHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCE-------EEEc-cc-hHH
Q 006256 452 IRDGDVLLTYGSS-----SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSC-------TYTH-IN-AIS 517 (653)
Q Consensus 452 I~dGdvILT~g~S-----s~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~v-------T~I~-Ds-Av~ 517 (653)
+..|+.+|..|.+ .....++.++.++|.+.-.|-.|-.| ..+..++...|++. .+.. |. ...
T Consensus 61 l~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~----~~i~~R~~s~g~d~~~~~~~~~~d~~d~~~~~ 136 (237)
T PRK05973 61 LKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTE----QDVRDRLRALGADRAQFADLFEFDTSDAICAD 136 (237)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCH----HHHHHHHHHcCCChHHhccceEeecCCCCCHH
Confidence 4568889988763 34456667776667654344444443 34555666666642 1111 11 223
Q ss_pred HHhh------hccEEEEcceeEecCCCeecccch--HHHHHHHhhCCCCeeeecccccc
Q 006256 518 YIIH------EVTRVFLGASSVLSNGTVCSRVGT--ACVAMVAYGFHIPVLVCCEAYKF 568 (653)
Q Consensus 518 ~iM~------~Vd~VllGAdaIlaNG~V~NKiGT--~~lAl~Ak~~~VPVyV~aetyKf 568 (653)
+++. +.+.|||=-=..+....--...+. ..+-..||.+|+|++++++...-
T Consensus 137 ~ii~~l~~~~~~~lVVIDsLq~l~~~~~~~el~~~~~~Lk~~Ak~~gitvIl~sQl~r~ 195 (237)
T PRK05973 137 YIIARLASAPRGTLVVIDYLQLLDQRREKPDLSVQVRALKSFARERGLIIVFISQIDRS 195 (237)
T ss_pred HHHHHHHHhhCCCEEEEEcHHHHhhcccchhHHHHHHHHHHHHHhCCCeEEEEecCccc
Confidence 3332 356666522111111110112222 33567899999999999986543
No 44
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=75.62 E-value=29 Score=31.79 Aligned_cols=60 Identities=22% Similarity=0.268 Sum_probs=37.6
Q ss_pred HHhCCCCEEEEc---cchHHHHhh-----hccEEEEcceeEecCCCeecc-cchHHHHHHHhhCC--CCeeeec
Q 006256 501 LVRKGLSCTYTH---INAISYIIH-----EVTRVFLGASSVLSNGTVCSR-VGTACVAMVAYGFH--IPVLVCC 563 (653)
Q Consensus 501 L~~~GI~vT~I~---DsAv~~iM~-----~Vd~VllGAdaIlaNG~V~NK-iGT~~lAl~Ak~~~--VPVyV~a 563 (653)
|...|+++..+. ++....++. ++|++++|++.- |.+... .|+....-+.++.. +||+|+.
T Consensus 74 ~~~~~~~~~~~~~~g~~~~~~I~~~a~~~~~dlIV~Gs~g~---~~l~~~~~gssva~~Vi~~a~~~c~Vlvv~ 144 (146)
T cd01989 74 CSRKGVQCEDVVLEDDDVAKAIVEYVADHGITKLVMGASSD---NHFSMKFKKSDVASSVLKEAPDFCTVYVVS 144 (146)
T ss_pred HhhcCCeEEEEEEeCCcHHHHHHHHHHHcCCCEEEEeccCC---CceeecccCCchhHHHHhcCCCCceEEEEe
Confidence 345787765443 233334443 689999999864 333222 35445556788888 9999986
No 45
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=74.17 E-value=40 Score=32.84 Aligned_cols=84 Identities=15% Similarity=0.161 Sum_probs=50.8
Q ss_pred HHHHHHhccCCCEEEEeCChH--HHHHHHHH-HHHcCCeeEE----------------EEeCCCCCchHHHHHHHHHhCC
Q 006256 445 VKHAVTKIRDGDVLLTYGSSS--AVEMILQH-AHELGKQFRV----------------VIVDSRPKHEGKLLLRRLVRKG 505 (653)
Q Consensus 445 a~~a~~~I~dGdvILT~g~Ss--~Ve~vL~~-A~e~gk~f~V----------------iV~ESRP~~EG~~La~eL~~~G 505 (653)
.+.+++.|.+...|..+|.+. .+...+.. ...-|+...+ ++.-++-..+=.++++.+.+.|
T Consensus 23 l~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~D~vI~iS~sG~t~~~i~~~~~ak~~g 102 (179)
T cd05005 23 LDKLISAILNAKRIFVYGAGRSGLVAKAFAMRLMHLGLNVYVVGETTTPAIGPGDLLIAISGSGETSSVVNAAEKAKKAG 102 (179)
T ss_pred HHHHHHHHHhCCeEEEEecChhHHHHHHHHHHHHhCCCeEEEeCCCCCCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHCC
Confidence 345566666667888887653 33222322 2222332211 1122222233456678899999
Q ss_pred CCEEEEccchHHHHhhhccEEEE
Q 006256 506 LSCTYTHINAISYIIHEVTRVFL 528 (653)
Q Consensus 506 I~vT~I~DsAv~~iM~~Vd~Vll 528 (653)
+++..|+++.-+.+-+.+|.+|.
T Consensus 103 ~~iI~IT~~~~s~la~~ad~~l~ 125 (179)
T cd05005 103 AKVVLITSNPDSPLAKLADVVVV 125 (179)
T ss_pred CeEEEEECCCCCchHHhCCEEEE
Confidence 99999999988888888898775
No 46
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=73.47 E-value=51 Score=34.23 Aligned_cols=43 Identities=12% Similarity=0.036 Sum_probs=35.0
Q ss_pred CCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcc
Q 006256 488 SRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (653)
Q Consensus 488 SRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGA 530 (653)
++-..+-.++++.+.+.|+++..|+++.-+.+-+.+|.+|...
T Consensus 185 sg~~~~~~~~~~~ak~~ga~iI~IT~~~~s~la~~ad~~l~~~ 227 (278)
T PRK11557 185 SGERRELNLAADEALRVGAKVLAITGFTPNALQQRASHCLYTI 227 (278)
T ss_pred CCCCHHHHHHHHHHHHcCCCEEEEcCCCCCchHHhCCEEEEeC
Confidence 3334455677899999999999999999888888899999753
No 47
>PRK05414 urocanate hydratase; Provisional
Probab=72.93 E-value=17 Score=42.00 Aligned_cols=114 Identities=24% Similarity=0.346 Sum_probs=76.5
Q ss_pred hHHHHHHHHHHHHHHHHhcCCcccc-HHHHHHHHHHHHHhc--------------------CCCccHHHHHHHHHHHHHH
Q 006256 373 LSRDLTAKISSYVSFLIDCRPLSVS-MGNAIRFLKSQIAKI--------------------PISLSESEAKATLHSDIER 431 (653)
Q Consensus 373 ~~rdL~~~L~~~i~~L~~aRPtsVs-mgNAIr~lk~~I~~~--------------------~~~~~~~eaK~~L~e~I~~ 431 (653)
...+|.+.|...-+...+.+|+|+. +||+..-+-+.+++. +.+++.+|+.+...++-+.
T Consensus 215 ~~~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~~i~pDlvtDQTSaHdp~~GY~P~G~t~ee~~~lr~~dp~~ 294 (556)
T PRK05414 215 KADDLDEALALAEEAKAAGEPLSIGLLGNAADVLPELVRRGIRPDLVTDQTSAHDPLNGYLPVGWTLEEAAELRAEDPEE 294 (556)
T ss_pred EcCCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHcCCCCCccCcCccccCcccccCCCCCCHHHHHHHHHhCHHH
Confidence 3456777777777778888999987 499987776655441 1135789999999999888
Q ss_pred HHHHHHHHHHHHHHHHHH---HhccCCCEEEEeCCh-----------------HHHHHHHHHHHHcCC-eeEEEEeCCCC
Q 006256 432 FINEKIILADRVIVKHAV---TKIRDGDVLLTYGSS-----------------SAVEMILQHAHELGK-QFRVVIVDSRP 490 (653)
Q Consensus 432 fi~E~i~~a~~~Ia~~a~---~~I~dGdvILT~g~S-----------------s~Ve~vL~~A~e~gk-~f~ViV~ESRP 490 (653)
|.+. +.+.|.+|.. ++-..|..+.-|||+ +-|..+|+-.+..|+ .||=+++-..|
T Consensus 295 ~~~~----~~~Sm~rhv~Am~~~~~~G~~~fDYGN~~r~~a~~aG~~~aF~~P~fV~~~irplF~~G~GPFRWvalSGdp 370 (556)
T PRK05414 295 FVKA----AKASMARHVEAMLAFQARGAYVFDYGNNIRQMAFDAGVENAFDFPGFVPAYIRPLFCEGKGPFRWVALSGDP 370 (556)
T ss_pred HHHH----HHHHHHHHHHHHHHHHHCCCeeeeccHHHHHHHHHCCccccCCCCCchhhhcchhhhcCCCCceEEEcCCCH
Confidence 8654 6666777654 344578888888874 334455555554554 36655555555
No 48
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=72.88 E-value=47 Score=32.22 Aligned_cols=38 Identities=11% Similarity=-0.081 Sum_probs=32.1
Q ss_pred hHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcc
Q 006256 493 EGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (653)
Q Consensus 493 EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGA 530 (653)
+=.++++.+.+.|+++..|+++.-+.+-+.+|.+|.-.
T Consensus 87 ~~i~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~~~ 124 (179)
T TIGR03127 87 SLVTVAKKAKEIGATVAAITTNPESTLGKLADVVVEIP 124 (179)
T ss_pred HHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEeC
Confidence 44566788999999999999999999999999988643
No 49
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=72.03 E-value=42 Score=38.08 Aligned_cols=50 Identities=6% Similarity=0.017 Sum_probs=38.8
Q ss_pred hccEEEEcce-eEecCCCeecccchHHHHHHHhhCCCCeeeecccccccccc
Q 006256 522 EVTRVFLGAS-SVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERV 572 (653)
Q Consensus 522 ~Vd~VllGAd-aIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~ 572 (653)
.+|..|.||+ +|..+|++++-.|....-+++ ..-.-+++++...|+.+++
T Consensus 181 ~advgit~an~aiAetGtlv~~~~~gn~R~~~-~lP~~hI~vvg~~kivp~~ 231 (432)
T TIGR00273 181 SADIGISGCNFAIAETGSIFLVENEGNGRLST-TLPKTHIAVMGIEKIVPTF 231 (432)
T ss_pred cCCEEEeccchHhhcCceEEEecCCCCchhhc-cCCCeEEEEEEHHHccCCH
Confidence 6999999999 999999999998888755554 3334455678888887764
No 50
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=70.18 E-value=19 Score=41.35 Aligned_cols=88 Identities=19% Similarity=0.364 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHHHHHHHhcCCcccc-HHHHHHHHHHHHHhc--------------------CCCccHHHHHHHHHHHHHH
Q 006256 373 LSRDLTAKISSYVSFLIDCRPLSVS-MGNAIRFLKSQIAKI--------------------PISLSESEAKATLHSDIER 431 (653)
Q Consensus 373 ~~rdL~~~L~~~i~~L~~aRPtsVs-mgNAIr~lk~~I~~~--------------------~~~~~~~eaK~~L~e~I~~ 431 (653)
...+|.+.|...-+...+.+|+|+. +||+..-+.+.+++. +.+++.+|+.+...++-+.
T Consensus 206 ~~~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~r~i~pDlvtDQTSaHdp~~GY~P~g~t~ee~~~lr~~dp~~ 285 (545)
T TIGR01228 206 QTDSLDEALARAEEAKAEGKPISIGLLGNAAEVLPELLKRGVVPDVVTDQTSAHDPLNGYIPEGYTVEDADKLRQEEPEA 285 (545)
T ss_pred EcCCHHHHHHHHHHHHHcCCceEEEeeccHHHHHHHHHHcCCCCCCcCCCCcccCcccccCCCCCCHHHHHHHHHhCHHH
Confidence 3456777777777778888999987 499987776665431 1134779999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHH---hccCCCEEEEeCCh
Q 006256 432 FINEKIILADRVIVKHAVT---KIRDGDVLLTYGSS 464 (653)
Q Consensus 432 fi~E~i~~a~~~Ia~~a~~---~I~dGdvILT~g~S 464 (653)
|.+. +.+.|.+|... +-..|..+.-|||+
T Consensus 286 ~~~~----~~~Sm~rhv~Am~~~~~~Ga~~fDYGN~ 317 (545)
T TIGR01228 286 YVKA----AKQSMAKHVRAMLAFQKQGSVTFDYGNN 317 (545)
T ss_pred HHHH----HHHHHHHHHHHHHHHHHCCCeeeeccHH
Confidence 8654 66677776543 34578888888875
No 51
>PRK02947 hypothetical protein; Provisional
Probab=69.43 E-value=1.5e+02 Score=30.89 Aligned_cols=37 Identities=8% Similarity=-0.104 Sum_probs=29.5
Q ss_pred chHHHHHHHHHhCCCCEEEEccchH-----------HHHhhhccEEEE
Q 006256 492 HEGKLLLRRLVRKGLSCTYTHINAI-----------SYIIHEVTRVFL 528 (653)
Q Consensus 492 ~EG~~La~eL~~~GI~vT~I~DsAv-----------~~iM~~Vd~Vll 528 (653)
.+=.++++.+.+.|+++..|+++.- +.+.+.+|.||.
T Consensus 120 ~~~i~~~~~a~~~g~~vI~iT~~~~s~~~~~~h~~gs~l~~~ad~~l~ 167 (246)
T PRK02947 120 PVPIEMALEAKERGAKVIAVTSLAYSASVASRHSSGKRLAEVADVVLD 167 (246)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCcccccccccCCCcCchhHhCCEEEE
Confidence 3456677999999999999999763 566777898885
No 52
>PRK07582 cystathionine gamma-lyase; Validated
Probab=69.39 E-value=44 Score=36.54 Aligned_cols=95 Identities=16% Similarity=0.087 Sum_probs=55.8
Q ss_pred CCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHHH-HHHhCCCCEEEEccchH-HHHhhhccEEEEcce
Q 006256 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLLR-RLVRKGLSCTYTHINAI-SYIIHEVTRVFLGAS 531 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La~-eL~~~GI~vT~I~DsAv-~~iM~~Vd~VllGAd 531 (653)
.+.|++-+.+.++..+|......| -+|++.+ |.+.+. .+++ .|...|+++.++..... ..+++++++|++-
T Consensus 66 ~~~v~~~sG~~Ai~~~l~all~~G--d~Vl~~~--~~y~~~~~~~~~~l~~~G~~v~~v~~~~~~~~~~~~t~lV~le-- 139 (366)
T PRK07582 66 AEALVFPSGMAAITAVLRALLRPG--DTVVVPA--DGYYQVRALAREYLAPLGVTVREAPTAGMAEAALAGADLVLAE-- 139 (366)
T ss_pred CCEEEECCHHHHHHHHHHHhcCCC--CEEEEeC--CCcHhHHHHHHHHHhcCeEEEEEECCCChHHHhccCceEEEEE--
Confidence 466666555666655555544333 4666653 555443 4443 46778999999864422 2344566666653
Q ss_pred eEecCCCeecccc----hHHHHHHHhhCCCCeee
Q 006256 532 SVLSNGTVCSRVG----TACVAMVAYGFHIPVLV 561 (653)
Q Consensus 532 aIlaNG~V~NKiG----T~~lAl~Ak~~~VPVyV 561 (653)
. .-|..| -..++-+|+.+++.++|
T Consensus 140 ~------p~NPtg~v~di~~I~~~a~~~g~~lvV 167 (366)
T PRK07582 140 T------PSNPGLDVCDLAALAAAAHAAGALLVV 167 (366)
T ss_pred C------CCCCCCCccCHHHHHHHHHHcCCEEEE
Confidence 1 223333 35677888899986655
No 53
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=69.21 E-value=1.2e+02 Score=30.68 Aligned_cols=37 Identities=8% Similarity=0.072 Sum_probs=23.7
Q ss_pred hhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeecc
Q 006256 521 HEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCE 564 (653)
Q Consensus 521 ~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~ae 564 (653)
.+=|.+|+ |...|..-+ ...++-.||.+|+|+++++.
T Consensus 108 ~~gDvli~----iS~SG~s~~---v~~a~~~Ak~~G~~vI~IT~ 144 (196)
T PRK10886 108 HAGDVLLA----ISTRGNSRD---IVKAVEAAVTRDMTIVALTG 144 (196)
T ss_pred CCCCEEEE----EeCCCCCHH---HHHHHHHHHHCCCEEEEEeC
Confidence 34466654 333443222 44566789999999999886
No 54
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=69.20 E-value=21 Score=40.13 Aligned_cols=72 Identities=18% Similarity=0.138 Sum_probs=47.0
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcc
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGA 530 (653)
.+..|+.+|.+.+=..+.+.+.+.| ++|.+.|.++......+...|.+.||.+.+-.... ....+|.||++.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G--~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~---~~~~~D~Vv~s~ 86 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELG--ARVTVVDDGDDERHRALAAILEALGATVRLGPGPT---LPEDTDLVVTSP 86 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCcc---ccCCCCEEEECC
Confidence 4678999998754323444555545 46888998876555566778999998775432222 233578887765
No 55
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=68.58 E-value=50 Score=37.25 Aligned_cols=99 Identities=20% Similarity=0.230 Sum_probs=53.0
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchH-HHHH-HHHHhCCCCEEEEccc---hHHHHhh-hccEEEEc
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEG-KLLL-RRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLG 529 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG-~~La-~eL~~~GI~vT~I~Ds---Av~~iM~-~Vd~VllG 529 (653)
..|+|-+-+.++..+|....+.|. +|++... .+.| ..+. +.|.+.|+.++++... .+-..+. +..+|++-
T Consensus 81 ~av~~sSGt~Al~~al~~ll~~Gd--~Vi~~~~--~y~~t~~~~~~~l~~~Gi~v~~vd~~d~~~l~~~i~~~TklV~~e 156 (433)
T PRK08134 81 GAIATASGQAALHLAIATLMGAGS--HIVASSA--LYGGSHNLLHYTLRRFGIETTFVKPGDIDGWRAAIRPNTRLLFGE 156 (433)
T ss_pred cEEEeCCHHHHHHHHHHHHhCCCC--EEEEeCC--ccHHHHHHHHHHHhhCCeEEEEECCCCHHHHHHhcCCCCeEEEEE
Confidence 456655555566555555544343 5666533 2333 2333 5577789988888532 3344443 34444432
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCCeeee
Q 006256 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (653)
Q Consensus 530 AdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~ 562 (653)
.+......+.. --.++-+||.||++|+|=
T Consensus 157 --~~~np~g~v~D--i~~I~~la~~~gi~livD 185 (433)
T PRK08134 157 --TLGNPGLEVLD--IPTVAAIAHEAGVPLLVD 185 (433)
T ss_pred --CCCcccCcccC--HHHHHHHHHHcCCEEEEE
Confidence 22111111111 345888999999998873
No 56
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=68.31 E-value=72 Score=35.51 Aligned_cols=98 Identities=18% Similarity=0.127 Sum_probs=53.6
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchH-HHHH-HHHHhCCCCEEEEccch---HHHHhh-hccEEEEc
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEG-KLLL-RRLVRKGLSCTYTHINA---ISYIIH-EVTRVFLG 529 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG-~~La-~eL~~~GI~vT~I~DsA---v~~iM~-~Vd~VllG 529 (653)
+.|++-+.+.++..+|......| -+|++.+. .+.+ ..+. ..+...|+.++++.... +...+. +...|++-
T Consensus 87 ~al~~~sG~~Ai~~~l~all~~G--d~Vl~~~~--~~~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~ai~~~tklV~~e 162 (403)
T PRK07810 87 ACFATASGMSAVFTALGALLGAG--DRLVAARS--LFGSCFVVCNEILPRWGVETVFVDGEDLSQWEEALSVPTQAVFFE 162 (403)
T ss_pred cEEEECChHHHHHHHHHHHhCCC--CEEEEccC--CcchHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcCcCceEEEEE
Confidence 56666666667766665554333 36776653 2323 2333 45677899999986432 333332 33444331
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 530 AdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
.-.-..|.++. --.++-+||+|+++|+|
T Consensus 163 -sp~Nptg~v~d---l~~I~~la~~~g~~viv 190 (403)
T PRK07810 163 -TPSNPMQSLVD---IAAVSELAHAAGAKVVL 190 (403)
T ss_pred -CCCCCCCeecC---HHHHHHHHHHcCCEEEE
Confidence 11112333332 44577789999988776
No 57
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=68.09 E-value=36 Score=37.77 Aligned_cols=94 Identities=18% Similarity=0.193 Sum_probs=53.9
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcceeE
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSV 533 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAdaI 533 (653)
.+.+|+..|.+..=..+-+.+.+.|. .|++.|..+...=.+...+|.+.|+.+.+ .......+..+|.||+++..-
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~d~vv~~~g~~ 79 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGA--KVILTDEKEEDQLKEALEELGELGIELVL--GEYPEEFLEGVDLVVVSPGVP 79 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhcCCEEEe--CCcchhHhhcCCEEEECCCCC
Confidence 46788888988733344445555564 66777765432223335677777876332 222224456789888876432
Q ss_pred ecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 534 LSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 534 laNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
.. ......|+++|+|++-
T Consensus 80 ~~----------~~~~~~a~~~~i~~~~ 97 (450)
T PRK14106 80 LD----------SPPVVQAHKKGIEVIG 97 (450)
T ss_pred CC----------CHHHHHHHHCCCcEEe
Confidence 22 2255566667776654
No 58
>PLN02651 cysteine desulfurase
Probab=67.90 E-value=1.5e+02 Score=31.83 Aligned_cols=102 Identities=13% Similarity=0.186 Sum_probs=52.1
Q ss_pred CCCEEEEeCChHHHHHHHHHHHH--cCCeeEEEEeCCCCCchHHHH-HHHHHhCCCCEEEEccc--------hHHHHhh-
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHE--LGKQFRVVIVDSRPKHEGKLL-LRRLVRKGLSCTYTHIN--------AISYIIH- 521 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e--~gk~f~ViV~ESRP~~EG~~L-a~eL~~~GI~vT~I~Ds--------Av~~iM~- 521 (653)
.+.+++|-|.+..+..+|..+.. .++.-+|++.+..- .+... ...|...|++++++... .+...+.
T Consensus 60 ~~~v~~t~~~t~a~~~~l~~~~~~~~~~g~~vl~~~~~h--~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~ 137 (364)
T PLN02651 60 PKEIIFTSGATESNNLAIKGVMHFYKDKKKHVITTQTEH--KCVLDSCRHLQQEGFEVTYLPVKSDGLVDLDELAAAIRP 137 (364)
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHhccCCCCEEEEccccc--HHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhcCC
Confidence 34677777666665444444322 12334677654322 22111 24456789998887421 2333332
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 522 ~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
+..+|++. ..-...|.+. . -..|+-+||.||++|+|
T Consensus 138 ~t~lv~v~-~~~n~tG~~~-~--l~~I~~~~~~~g~~~~v 173 (364)
T PLN02651 138 DTALVSVM-AVNNEIGVIQ-P--VEEIGELCREKKVLFHT 173 (364)
T ss_pred CcEEEEEE-CCCCCceecc-c--HHHHHHHHHHcCCEEEE
Confidence 33344332 1112334332 2 23588899999988876
No 59
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=67.84 E-value=1.6e+02 Score=31.75 Aligned_cols=102 Identities=14% Similarity=0.203 Sum_probs=52.3
Q ss_pred CCCEEEEeCChHHHHHHHHHHHH-cCCeeEEEEeCCCCCchHH-HHHHHHHhCCCCEEEEccc--------hHHHHhh-h
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHE-LGKQFRVVIVDSRPKHEGK-LLLRRLVRKGLSCTYTHIN--------AISYIIH-E 522 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e-~gk~f~ViV~ESRP~~EG~-~La~eL~~~GI~vT~I~Ds--------Av~~iM~-~ 522 (653)
...+++|.|.+..+..+|..+.. ....-+|++.+. .+.+. .....+...|+.+.++... .+-..+. +
T Consensus 59 ~~~i~~t~~~t~a~~~al~~~~~~~~~~~~vv~~~~--~~~s~~~~~~~~~~~G~~v~~v~~~~~g~~~~~~l~~~i~~~ 136 (379)
T TIGR03402 59 PDEIIFTSGGTESDNTAIKSALAAQPEKRHIITTAV--EHPAVLSLCQHLEKQGYKVTYLPVDEEGRLDLEELRAAITDD 136 (379)
T ss_pred CCeEEEeCcHHHHHHHHHHHHHHhcCCCCeEEEccc--ccHHHHHHHHHHHHcCCEEEEEccCCCCcCCHHHHHHhcCCC
Confidence 34577887777777666655432 111223444322 22232 2234566689999888521 1222222 2
Q ss_pred ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 523 Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
..+|++ ...-...|.+. .+ -.|+-+|+.|+++++|
T Consensus 137 ~~lv~i-~~~~n~tG~~~-~~--~~I~~l~~~~g~~viv 171 (379)
T TIGR03402 137 TALVSV-MWANNETGTIF-PI--EEIGEIAKERGALFHT 171 (379)
T ss_pred cEEEEE-EcccCCeeecc-cH--HHHHHHHHHcCCEEEE
Confidence 333332 22222333333 33 3588899999988876
No 60
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=67.35 E-value=87 Score=32.84 Aligned_cols=49 Identities=12% Similarity=-0.013 Sum_probs=38.6
Q ss_pred eEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEc
Q 006256 481 FRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLG 529 (653)
Q Consensus 481 f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllG 529 (653)
+-+++.-++-..+-..+++.+.+.|+++..|+++.-+.+-+.+|.+|.-
T Consensus 190 l~I~iS~sG~t~~~~~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~~ 238 (292)
T PRK11337 190 VVLVVSHSGRTSDVIEAVELAKKNGAKIICITNSYHSPIAKLADYVICS 238 (292)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEc
Confidence 3344455555566677788899999999999999988888889999974
No 61
>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed
Probab=67.31 E-value=55 Score=35.72 Aligned_cols=50 Identities=8% Similarity=0.134 Sum_probs=31.8
Q ss_pred chHHHHhhhccEEEEccee----EecCCCeeccc----chHHHHHHHhhCCCCeeeec
Q 006256 514 NAISYIIHEVTRVFLGASS----VLSNGTVCSRV----GTACVAMVAYGFHIPVLVCC 563 (653)
Q Consensus 514 sAv~~iM~~Vd~VllGAda----IlaNG~V~NKi----GT~~lAl~Ak~~~VPVyV~a 563 (653)
.++-.++..=..||+..+. +-.||.+.|-- +=...+++|...+--.++++
T Consensus 176 ~aI~~LLe~G~IvI~~GgGGiPV~~~~g~~~gveaViD~D~aAa~LA~~L~AD~LIiL 233 (313)
T PRK12454 176 EVIKALVENGFIVIASGGGGIPVIEEDGELKGVEAVIDKDLASELLAEELNADIFIIL 233 (313)
T ss_pred HHHHHHHHCCCEEEEeCCCccceEcCCCcEEeeeeecCccHHHHHHHHHcCCCEEEEE
Confidence 4555666666667777664 44677666642 24455788999988755543
No 62
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=66.91 E-value=60 Score=29.49 Aligned_cols=84 Identities=13% Similarity=0.100 Sum_probs=54.8
Q ss_pred HHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc------c-hHHHHhh--hccEEEEcceeEecCCCe
Q 006256 469 MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI------N-AISYIIH--EVTRVFLGASSVLSNGTV 539 (653)
Q Consensus 469 ~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D------s-Av~~iM~--~Vd~VllGAdaIlaNG~V 539 (653)
.+.+... ...|++|.+++ .++.|.+.||+|+.+.. . .+..+.. ++|+||-= .+|.-
T Consensus 16 ~~a~~l~--~~G~~i~AT~g--------Ta~~L~~~Gi~~~~v~~~~~~g~~~i~~~i~~~g~idlVIn~-----~~~~~ 80 (112)
T cd00532 16 DLAPKLS--SDGFPLFATGG--------TSRVLADAGIPVRAVSKRHEDGEPTVDAAIAEKGKFDVVINL-----RDPRR 80 (112)
T ss_pred HHHHHHH--HCCCEEEECcH--------HHHHHHHcCCceEEEEecCCCCCcHHHHHHhCCCCEEEEEEc-----CCCCc
Confidence 4444444 35688887654 56778889999988632 2 3444444 58888653 23332
Q ss_pred --ecccchHHHHHHHhhCCCCeeeeccccc
Q 006256 540 --CSRVGTACVAMVAYGFHIPVLVCCEAYK 567 (653)
Q Consensus 540 --~NKiGT~~lAl~Ak~~~VPVyV~aetyK 567 (653)
-.....+.+=-+|-.++||++....+..
T Consensus 81 ~~~~~~dg~~iRR~A~~~~Ip~~T~~~ta~ 110 (112)
T cd00532 81 DRCTDEDGTALLRLARLYKIPVTTPNATAM 110 (112)
T ss_pred ccccCCChHHHHHHHHHcCCCEEECHHHHh
Confidence 1255677888899999999998766554
No 63
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=66.36 E-value=24 Score=40.74 Aligned_cols=115 Identities=23% Similarity=0.336 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHHHHHHHhcCCcccc-HHHHHHHHHHHHHhc--------------------CCCccHHHHHHHHHHHHHH
Q 006256 373 LSRDLTAKISSYVSFLIDCRPLSVS-MGNAIRFLKSQIAKI--------------------PISLSESEAKATLHSDIER 431 (653)
Q Consensus 373 ~~rdL~~~L~~~i~~L~~aRPtsVs-mgNAIr~lk~~I~~~--------------------~~~~~~~eaK~~L~e~I~~ 431 (653)
...+|.+.|...-++..+-+|+|+. +||+..-+.+.+++. +.+++.+|+++...++-+.
T Consensus 205 ~~~~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~l~~~~i~pDl~tDQTS~Hdp~~GY~P~g~t~eea~~l~~~dp~~ 284 (546)
T PF01175_consen 205 VTDDLDEALARAKEARAKKEPLSIGLLGNAADLWEELVERGIIPDLVTDQTSAHDPLNGYYPAGLTFEEANELRAEDPEE 284 (546)
T ss_dssp EESSHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHHHTT---SEE---SSTT-TTTS---TT--HHHHHHHHHHSHHH
T ss_pred EcCCHHHHHHHHHHhhccCCeeEEEEeccHHHHHHHHHHcCCCCCcccCCCccccccccCCCCCCCHHHHHHHHhhCHHH
Confidence 3456777788888888899999987 599988776665441 1135789999999998888
Q ss_pred HHHHHHHHHHHHHHHHHH---HhccCCCEEEEeCCh-----------------HHHHHHHHHHHHcCCe-eEEEEeCCCC
Q 006256 432 FINEKIILADRVIVKHAV---TKIRDGDVLLTYGSS-----------------SAVEMILQHAHELGKQ-FRVVIVDSRP 490 (653)
Q Consensus 432 fi~E~i~~a~~~Ia~~a~---~~I~dGdvILT~g~S-----------------s~Ve~vL~~A~e~gk~-f~ViV~ESRP 490 (653)
|.+. +.+.|.+|.. ++-..|..+.=|||+ +-|+.+|+-.+..|+. ||=+|+-..|
T Consensus 285 ~~~~----v~~Sl~rhv~Am~~~~~~G~~~fDYGN~~r~~a~~aG~~~aF~~P~fV~~~irplF~~G~GPFRWv~lSGdp 360 (546)
T PF01175_consen 285 FKER----VQESLARHVEAMLELQDRGAYFFDYGNNFRLEAFDAGVDEAFDYPSFVPAYIRPLFCEGFGPFRWVCLSGDP 360 (546)
T ss_dssp HHHH----HHHHHHHHHHHHHHHHHTT-EE-B-SSSHHHHHHHTT-TTGGGS-BHHHHTTHHHHTTT-EEEEEEETT--H
T ss_pred HHHH----HHHHHHHHHHHHHHHHHCCCEEEecCchHHHHHHHcCcceeecccccHHHHhhHHhhcCCCCceeeecCCCH
Confidence 8654 6666776654 344578888889886 4566777777777874 8877776666
Q ss_pred C
Q 006256 491 K 491 (653)
Q Consensus 491 ~ 491 (653)
.
T Consensus 361 e 361 (546)
T PF01175_consen 361 E 361 (546)
T ss_dssp H
T ss_pred H
Confidence 3
No 64
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=65.92 E-value=79 Score=34.90 Aligned_cols=98 Identities=17% Similarity=0.217 Sum_probs=52.2
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHH-HHHHhCCCCEEEEcc---chHHHHhh-hccEEEEc
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHI---NAISYIIH-EVTRVFLG 529 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La-~eL~~~GI~vT~I~D---sAv~~iM~-~Vd~VllG 529 (653)
+.|+|-+...++..+|......|. +|++. ++.+.+. .+. ..+...|+.++++.. ..+...+. +..+|++-
T Consensus 78 ~~v~~ssG~~Ai~~al~al~~~Gd--~Vi~~--~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~~tklV~ie 153 (390)
T PRK08133 78 ACVATASGMAAILAVVMALLQAGD--HVVSS--RSLFGSTVSLFEKIFARFGIETTFVDLTDLDAWRAAVRPNTKLFFLE 153 (390)
T ss_pred cEEEECCHHHHHHHHHHHHhCCCC--EEEEc--cCcchhHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcCcCCeEEEEE
Confidence 456665555566555555544444 56653 3444433 333 356778999988843 23333333 34444431
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 530 AdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
.---..|.+.. -..|+-+|++|+++++|
T Consensus 154 -~p~NptG~v~d---l~~I~~la~~~gi~liv 181 (390)
T PRK08133 154 -TPSNPLTELAD---IAALAEIAHAAGALLVV 181 (390)
T ss_pred -CCCCCCCCcCC---HHHHHHHHHHcCCEEEE
Confidence 11112233321 14677789999988776
No 65
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=65.72 E-value=1.6e+02 Score=31.05 Aligned_cols=44 Identities=16% Similarity=-0.108 Sum_probs=36.4
Q ss_pred CCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcc
Q 006256 487 DSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (653)
Q Consensus 487 ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGA 530 (653)
-|+--.|-.+.++...+.|+++..|+++..+-+-+.+|.+|...
T Consensus 186 ~sG~t~e~i~~a~~ak~~ga~vIaiT~~~~spla~~Ad~~L~~~ 229 (281)
T COG1737 186 FSGYTREIVEAAELAKERGAKVIAITDSADSPLAKLADIVLLVP 229 (281)
T ss_pred CCCCcHHHHHHHHHHHHCCCcEEEEcCCCCCchhhhhceEEecc
Confidence 34444466777899999999999999999999999999998864
No 66
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=65.01 E-value=68 Score=35.52 Aligned_cols=61 Identities=25% Similarity=0.335 Sum_probs=36.6
Q ss_pred HhccCCCEEEEeCChHHHHHHHHHHHHc-CCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc
Q 006256 450 TKIRDGDVLLTYGSSSAVEMILQHAHEL-GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (653)
Q Consensus 450 ~~I~dGdvILT~g~Ss~Ve~vL~~A~e~-gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~ 512 (653)
..|..||+|+..|....+..+.+...+. ...-+++|+-. ..-|+.+++.|.+.|+++++|.
T Consensus 200 ~~l~~gD~l~v~g~~~~l~~~~~~~~~~~~~~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid 261 (453)
T PRK09496 200 TVIEAGDEVYFIGAREHIRAVMSEFGRLEKPVKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIE 261 (453)
T ss_pred cEecCCCEEEEEeCHHHHHHHHHHhCccCCCCCEEEEECC--CHHHHHHHHHHHhCCCeEEEEE
Confidence 3455677777777776665544433221 12345666655 3456777777777777777763
No 67
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=64.24 E-value=43 Score=35.59 Aligned_cols=100 Identities=15% Similarity=0.114 Sum_probs=59.5
Q ss_pred cCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc-chHHHHhhhccEEEEcce
Q 006256 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-NAISYIIHEVTRVFLGAS 531 (653)
Q Consensus 453 ~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D-sAv~~iM~~Vd~VllGAd 531 (653)
....+++|.|.+.++.. +..+...| +|++. .|.+.+... .+...|+++..+.| ..+-..+++.+.|++ ..
T Consensus 63 ~~~~i~~t~G~~~~i~~-~~~~l~~g---~vl~~--~p~y~~~~~--~~~~~g~~~~~~~d~~~l~~~~~~~~~v~i-~~ 133 (330)
T TIGR01140 63 PAASVLPVNGAQEAIYL-LPRLLAPG---RVLVL--APTYSEYAR--AWRAAGHEVVELPDLDRLPAALEELDVLVL-CN 133 (330)
T ss_pred ChhhEEECCCHHHHHHH-HHHHhCCC---eEEEe--CCCcHHHHH--HHHHcCCEEEEeCCHHHHHhhcccCCEEEE-eC
Confidence 34578888887777744 44554333 45553 577766543 35678999988874 233334456665555 22
Q ss_pred eEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 532 SVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 532 aIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
-=-.-|.++..-.-..++-+|+.|++++++
T Consensus 134 p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~ 163 (330)
T TIGR01140 134 PNNPTGRLIPPETLLALAARLRARGGWLVV 163 (330)
T ss_pred CCCCCCCCCCHHHHHHHHHHhHhcCCEEEE
Confidence 212345555544455567788889987664
No 68
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=64.11 E-value=1e+02 Score=32.83 Aligned_cols=102 Identities=17% Similarity=0.214 Sum_probs=50.2
Q ss_pred CCEEEEeCChHHHHHHHHHHHHcC--Ce-eEEEEeCC-CCCchHHHHHHHHHhCCCCEEEEccc-----hHHHHhhhc--
Q 006256 455 GDVLLTYGSSSAVEMILQHAHELG--KQ-FRVVIVDS-RPKHEGKLLLRRLVRKGLSCTYTHIN-----AISYIIHEV-- 523 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~e~g--k~-f~ViV~ES-RP~~EG~~La~eL~~~GI~vT~I~Ds-----Av~~iM~~V-- 523 (653)
.++++|-|.+..+..+|......+ +. -+|++.+. .|.+ ......+...|+++.++... .+..+-..+
T Consensus 60 ~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~~vi~~~~~~~s~--~~~~~~~~~~G~~v~~v~~~~~~~~d~~~l~~~l~~ 137 (353)
T TIGR03235 60 EEVIFTSGATESNNLAILGLARAGEQKGKKHIITSAIEHPAV--LEPIRALERNGFTVTYLPVDESGRIDVDELADAIRP 137 (353)
T ss_pred CeEEEeCCHHHHHHHHHHHHHHhcccCCCCeeeEcccccHHH--HHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhCCC
Confidence 457777666666655555443211 11 35555432 2222 11123455679998887531 122222211
Q ss_pred -cEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 524 -TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 524 -d~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
+++++=.+.-...|.+.. -..|+-+|++|+++|+|
T Consensus 138 ~~~lv~~~~~~n~tG~~~~---~~~I~~l~~~~~~~~iv 173 (353)
T TIGR03235 138 DTLLVSIMHVNNETGSIQP---IREIAEVLEAHEAFFHV 173 (353)
T ss_pred CCEEEEEEcccCCceeccC---HHHHHHHHHHcCCEEEE
Confidence 222222222223344332 25588889999988876
No 69
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=64.06 E-value=1e+02 Score=30.14 Aligned_cols=120 Identities=15% Similarity=0.145 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHhc--cCCCEEEEeCCh-----HHHHHHHHHHHHcCCeeEEEEeCCCC-CchHHHH-HHHHHhCCCC
Q 006256 437 IILADRVIVKHAVTKI--RDGDVLLTYGSS-----SAVEMILQHAHELGKQFRVVIVDSRP-KHEGKLL-LRRLVRKGLS 507 (653)
Q Consensus 437 i~~a~~~Ia~~a~~~I--~dGdvILT~g~S-----s~Ve~vL~~A~e~gk~f~ViV~ESRP-~~EG~~L-a~eL~~~GI~ 507 (653)
++.|-..++++..+++ ..+..|+.+|-+ -.+ .+-+++++.|.+..|+++.-.. ..+-.+. .+.+.+.|++
T Consensus 5 ME~Ag~~~a~~i~~~~~~~~~~~v~il~G~GnNGgDgl-~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~ 83 (169)
T PF03853_consen 5 MENAGRAIAELIRKLFGSPKGPRVLILCGPGNNGGDGL-VAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIK 83 (169)
T ss_dssp HHHHHHHHHHHHHHHSTCCTT-EEEEEE-SSHHHHHHH-HHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-E
T ss_pred HHHHHHHHHHHHHHHhcccCCCeEEEEECCCCChHHHH-HHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCc
Confidence 3457778888888888 667777777542 233 3456777788888887665433 3333333 4678888987
Q ss_pred EEEE-ccchHHHHhhhccEEEEcceeEecCCCeecccchH-HHHHHHhhCCCCee
Q 006256 508 CTYT-HINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTA-CVAMVAYGFHIPVL 560 (653)
Q Consensus 508 vT~I-~DsAv~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~-~lAl~Ak~~~VPVy 560 (653)
+... .+......+..+|.|| |+|+-.|--=.--|.+ .+.-.+++++.|++
T Consensus 84 ~~~~~~~~~~~~~~~~~dlII---Dal~G~G~~~~l~~~~~~~i~~iN~~~~~vi 135 (169)
T PF03853_consen 84 IIELDSDEDLSEALEPADLII---DALFGTGFSGPLRGPIAELIDWINASRAPVI 135 (169)
T ss_dssp EESSCCGSGGGHHGSCESEEE---EES-STTGGSCGSTCHHHHHHHHHHHCSEEE
T ss_pred EeeccccchhhcccccccEEE---EecccCCCCCCcCHHHHHHHHHHhccCCcEE
Confidence 7654 3445555666788886 6788776333333332 33334556666643
No 70
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=64.01 E-value=73 Score=28.59 Aligned_cols=95 Identities=17% Similarity=0.264 Sum_probs=59.9
Q ss_pred CCEEEEeCChH--HHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc-----chHHHHhh--hccE
Q 006256 455 GDVLLTYGSSS--AVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-----NAISYIIH--EVTR 525 (653)
Q Consensus 455 GdvILT~g~Ss--~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D-----sAv~~iM~--~Vd~ 525 (653)
|.++++++.+. -+..+++..++ ..|++|.+++ .++.|.+.||+|+.+.. ..+...++ ++|.
T Consensus 1 g~vl~s~~~~~k~~~~~~~~~l~~--~G~~l~aT~g--------T~~~l~~~gi~~~~v~~~~~~~~~i~~~i~~~~id~ 70 (110)
T cd01424 1 GTVFISVADRDKPEAVEIAKRLAE--LGFKLVATEG--------TAKYLQEAGIPVEVVNKVSEGRPNIVDLIKNGEIQL 70 (110)
T ss_pred CeEEEEEEcCcHhHHHHHHHHHHH--CCCEEEEchH--------HHHHHHHcCCeEEEEeecCCCchhHHHHHHcCCeEE
Confidence 34566666443 23344455444 4688887653 56778899999887632 33444444 7899
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeeccc
Q 006256 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (653)
Q Consensus 526 VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~aet 565 (653)
||--.+ +.- ...-.|.+=-+|-.|+||++-..++
T Consensus 71 vIn~~~-----~~~-~~~~~~~iRR~Av~~~ipl~T~~~t 104 (110)
T cd01424 71 VINTPS-----GKR-AIRDGFSIRRAALEYKVPYFTTLDT 104 (110)
T ss_pred EEECCC-----CCc-cCccHHHHHHHHHHhCCCEEecHHH
Confidence 987542 221 1234578888999999999955443
No 71
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=63.57 E-value=47 Score=33.64 Aligned_cols=94 Identities=20% Similarity=0.176 Sum_probs=59.6
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcceeE
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSV 533 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAdaI 533 (653)
.|..||..|.+.+-..-++.+.+.|-.++|+ ...+. .-..+|.+.| .++++.-.--...+..+++||+.
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVv--sp~~~----~~l~~l~~~~-~i~~~~~~~~~~dl~~~~lVi~a---- 76 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVI--AEELE----SELTLLAEQG-GITWLARCFDADILEGAFLVIAA---- 76 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEE--cCCCC----HHHHHHHHcC-CEEEEeCCCCHHHhCCcEEEEEC----
Confidence 5778999999987666677777777655544 43333 2234566666 77777643223334556666543
Q ss_pred ecCCCe-ecccchHHHHHHHhhCCCCeeeecc
Q 006256 534 LSNGTV-CSRVGTACVAMVAYGFHIPVLVCCE 564 (653)
Q Consensus 534 laNG~V-~NKiGT~~lAl~Ak~~~VPVyV~ae 564 (653)
-|+- +| ..++..|+..++||.++-+
T Consensus 77 --t~d~~ln----~~i~~~a~~~~ilvn~~d~ 102 (205)
T TIGR01470 77 --TDDEELN----RRVAHAARARGVPVNVVDD 102 (205)
T ss_pred --CCCHHHH----HHHHHHHHHcCCEEEECCC
Confidence 2332 33 3688899999999998764
No 72
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=63.07 E-value=98 Score=33.08 Aligned_cols=71 Identities=17% Similarity=0.213 Sum_probs=44.3
Q ss_pred CCeeEEEEeCCCCCchHHHHHHHHHhC-CCCEEEEccchHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCC
Q 006256 478 GKQFRVVIVDSRPKHEGKLLLRRLVRK-GLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFH 556 (653)
Q Consensus 478 gk~f~ViV~ESRP~~EG~~La~eL~~~-GI~vT~I~DsAv~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~ 556 (653)
..+++++++-..|. .-.++.+.+.+. |+.+.++. ..+..+|..+|.+|+-+ |+..+ =|-.+|
T Consensus 218 ~~~~~~ii~~~~~~-~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~aDl~v~~s-------------G~~~l--Ea~a~G 280 (380)
T PRK00025 218 YPDLRFVLPLVNPK-RREQIEEALAEYAGLEVTLLD-GQKREAMAAADAALAAS-------------GTVTL--ELALLK 280 (380)
T ss_pred CCCeEEEEecCChh-hHHHHHHHHhhcCCCCeEEEc-ccHHHHHHhCCEEEECc-------------cHHHH--HHHHhC
Confidence 34566666532222 122333445555 78876664 46788889999998832 66444 467789
Q ss_pred CCeeeeccc
Q 006256 557 IPVLVCCEA 565 (653)
Q Consensus 557 VPVyV~aet 565 (653)
+|++++-..
T Consensus 281 ~PvI~~~~~ 289 (380)
T PRK00025 281 VPMVVGYKV 289 (380)
T ss_pred CCEEEEEcc
Confidence 999988543
No 73
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=62.93 E-value=43 Score=31.38 Aligned_cols=72 Identities=18% Similarity=0.323 Sum_probs=53.2
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEc
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLG 529 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllG 529 (653)
.|..||.+|.+.+-..++..+++.|-+ +|+|+. |-......|+..+ .+..+.++....+...+.++|.||-.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~-~i~i~n-Rt~~ra~~l~~~~--~~~~~~~~~~~~~~~~~~~~DivI~a 82 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAK-EITIVN-RTPERAEALAEEF--GGVNIEAIPLEDLEEALQEADIVINA 82 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSS-EEEEEE-SSHHHHHHHHHHH--TGCSEEEEEGGGHCHHHHTESEEEE-
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCC-EEEEEE-CCHHHHHHHHHHc--CccccceeeHHHHHHHHhhCCeEEEe
Confidence 578999999998888888888877655 344443 5555566777777 56677888877788888999988654
No 74
>PRK05839 hypothetical protein; Provisional
Probab=62.83 E-value=63 Score=35.09 Aligned_cols=105 Identities=11% Similarity=0.070 Sum_probs=55.1
Q ss_pred ccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccch-HHHH-------hhhc
Q 006256 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA-ISYI-------IHEV 523 (653)
Q Consensus 452 I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsA-v~~i-------M~~V 523 (653)
+...++++|.|.+.++..++......+.. ..++++ .|.+.+.... +...|+++..+.... -++. .+++
T Consensus 81 ~~~~~I~it~G~~~al~~~~~~~~~~~~g-d~vlv~-~P~y~~~~~~--~~~~g~~v~~v~~~~~~~~~~d~~~~~~~~~ 156 (374)
T PRK05839 81 LKENELIPTFGTREVLFNFPQFVLFDKQN-PTIAYP-NPFYQIYEGA--AIASRAKVLLMPLTKENDFTPSLNEKELQEV 156 (374)
T ss_pred CCcceEEEecCcHHHHHHHHHHHhcCCCC-CEEEEC-CCCchhhHHH--HHhcCCEEEEeecccccCCcCCcchhhhccc
Confidence 45567889999888875444433211112 344445 4777665544 346788887775421 1111 1234
Q ss_pred cEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 524 d~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
.+|++- .-=-..|.++++-=-..++-+|+.|++.+++
T Consensus 157 k~v~i~-nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~ 193 (374)
T PRK05839 157 DLVILN-SPNNPTGRTLSLEELIEWVKLALKHDFILIN 193 (374)
T ss_pred cEEEEe-CCCCCcCcccCHHHHHHHHHHHHHcCCEEEe
Confidence 444331 1111114444433334566678899987764
No 75
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=62.41 E-value=59 Score=29.02 Aligned_cols=81 Identities=20% Similarity=0.313 Sum_probs=51.5
Q ss_pred EEEEeCChHHHHHHHHHHHHc-CCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc--c-hHHHHhh------hcc-E
Q 006256 457 VLLTYGSSSAVEMILQHAHEL-GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--N-AISYIIH------EVT-R 525 (653)
Q Consensus 457 vILT~g~Ss~Ve~vL~~A~e~-gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D--s-Av~~iM~------~Vd-~ 525 (653)
+|-||.....+..+|....++ ...++|||++..+..+-..+++++.+.+.+++++.- + ..+..+. .-+ .
T Consensus 3 vip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~~~~~i~~i~~~~n~g~~~~~n~~~~~a~~~~i 82 (169)
T PF00535_consen 3 VIPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAESDPNIRYIRNPENLGFSAARNRGIKHAKGEYI 82 (169)
T ss_dssp EEEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHCCSTTEEEEEHCCCSHHHHHHHHHHHH--SSEE
T ss_pred EEEeeCCHHHHHHHHHHHhhccCCCEEEEEeccccccccccccccccccccccccccccccccccccccccccccceeEE
Confidence 456666667777888877766 667999999988877777888888877788888853 3 3333332 223 3
Q ss_pred EEEcceeEecCC
Q 006256 526 VFLGASSVLSNG 537 (653)
Q Consensus 526 VllGAdaIlaNG 537 (653)
+++-+|.++..+
T Consensus 83 ~~ld~D~~~~~~ 94 (169)
T PF00535_consen 83 LFLDDDDIISPD 94 (169)
T ss_dssp EEEETTEEE-TT
T ss_pred EEeCCCceEcHH
Confidence 444666665554
No 76
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=62.04 E-value=79 Score=33.17 Aligned_cols=103 Identities=11% Similarity=0.056 Sum_probs=50.4
Q ss_pred hccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc---chHHHHhhh-----
Q 006256 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---NAISYIIHE----- 522 (653)
Q Consensus 451 ~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D---sAv~~iM~~----- 522 (653)
++...+.|++.+.+..+..++..+...| -+|++ ++|.+..... .+...|+++.++.. ..+-.++.+
T Consensus 58 ~~~~~~~iv~~sg~~a~~~~~~~~~~~g--d~Vl~--~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~ 131 (349)
T cd06454 58 FHGKEAALVFSSGYAANDGVLSTLAGKG--DLIIS--DSLNHASIID--GIRLSGAKKRIFKHNDMEDLEKLLREARRPY 131 (349)
T ss_pred HhCCCCEEEeccHHHHHHHHHHHhcCCC--CEEEE--ehhhhHHHHH--HHHHcCCceEEecCCCHHHHHHHHHHhhccC
Confidence 3333355555544445544444443333 34554 3455444332 23457888876632 233344433
Q ss_pred ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeee
Q 006256 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (653)
Q Consensus 523 Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~ 562 (653)
-.++++ ...+....++...+ -.|+-+|++|+++|+|=
T Consensus 132 ~~~~v~-~~~~~~~tG~~~~~--~~i~~~~~~~~~~livD 168 (349)
T cd06454 132 GKKLIV-TEGVYSMDGDIAPL--PELVDLAKKYGAILFVD 168 (349)
T ss_pred CCeEEE-EeccccCCCCccCH--HHHHHHHHHcCCEEEEE
Confidence 123333 22333222233443 45778899999888763
No 77
>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP. Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).
Probab=62.04 E-value=1.1e+02 Score=33.44 Aligned_cols=50 Identities=18% Similarity=0.161 Sum_probs=29.8
Q ss_pred chHHHHhhhccEEEEcce----eEecCCCeeccc----chHHHHHHHhhCCCCeeeec
Q 006256 514 NAISYIIHEVTRVFLGAS----SVLSNGTVCSRV----GTACVAMVAYGFHIPVLVCC 563 (653)
Q Consensus 514 sAv~~iM~~Vd~VllGAd----aIlaNG~V~NKi----GT~~lAl~Ak~~~VPVyV~a 563 (653)
.++-.++.+=-.+|+..+ .+..||.+.|-- +=...+++|.+.+.-.++.+
T Consensus 172 ~~I~~Ll~~g~IpI~~GggGiPv~~~~~~~~gveaVid~D~~AallA~~l~Ad~Liil 229 (308)
T cd04235 172 EAIKTLVDNGVIVIAAGGGGIPVVREGGGLKGVEAVIDKDLASALLAEEINADLLVIL 229 (308)
T ss_pred HHHHHHHHCCCEEEEECCCccCEEEcCCceeeeeeccCccHHHHHHHHHcCCCEEEEE
Confidence 445555655555666655 444555554432 24667788999888766654
No 78
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=61.78 E-value=69 Score=36.10 Aligned_cols=99 Identities=18% Similarity=0.258 Sum_probs=58.3
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHH-HHHHhCCCCEEEEccc---hHHHHhh-hccEEEEc
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLG 529 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La-~eL~~~GI~vT~I~Ds---Av~~iM~-~Vd~VllG 529 (653)
+.|+|-+.+.++..+|....+.|. +|++.+ +.+.|. .+. ..+...|++++++... .+-..+. ++.+|++-
T Consensus 81 ~al~~~sG~~Ai~~al~~ll~~GD--~Vlv~~--~~y~~t~~~~~~~~~~~Gv~v~~vd~~d~e~l~~ai~~~tklV~l~ 156 (431)
T PRK08248 81 GALAVSSGQAAITYSILNIASAGD--EIVSSS--SLYGGTYNLFAHTLPKLGITVKFVDPSDPENFEAAITDKTKALFAE 156 (431)
T ss_pred cEEEECCHHHHHHHHHHHHhCCCC--EEEEcc--CchhhHHHHHHHHHHhCCEEEEEECCCCHHHHHHhcCCCCeEEEEE
Confidence 667777777788777766654444 566654 555443 333 4577889999888532 3333332 45555552
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCCeeee
Q 006256 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (653)
Q Consensus 530 AdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~ 562 (653)
.---..|.++. -..|+-+||.++++|+|=
T Consensus 157 -sp~NPtG~v~d---i~~I~~la~~~gi~vIvD 185 (431)
T PRK08248 157 -TIGNPKGDVLD---IEAVAAIAHEHGIPLIVD 185 (431)
T ss_pred -CCCCCCCcccC---HHHHHHHHHHcCCEEEEe
Confidence 11112244443 246777899999887763
No 79
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=61.75 E-value=69 Score=29.39 Aligned_cols=36 Identities=14% Similarity=0.229 Sum_probs=27.7
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeec
Q 006256 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (653)
Q Consensus 522 ~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~a 563 (653)
++|++++|.+. + ...+.| ....-+.++-++||+|+=
T Consensus 103 ~~DLIV~Gs~~----~-~~~~lg-Sva~~v~~~a~~pVLvv~ 138 (144)
T PRK15118 103 DMDLVVCGHHQ----D-FWSKLM-SSARQLINTVHVDMLIVP 138 (144)
T ss_pred CCCEEEEeCcc----c-HHHHHH-HHHHHHHhhCCCCEEEec
Confidence 69999999985 2 344578 455568888999999974
No 80
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=61.28 E-value=69 Score=36.27 Aligned_cols=101 Identities=17% Similarity=0.183 Sum_probs=52.1
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-H-HHHHHHhCCCCEEEEcc-c---hHHHHhhhccEEEEc
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-L-LLRRLVRKGLSCTYTHI-N---AISYIIHEVTRVFLG 529 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~-~-La~eL~~~GI~vT~I~D-s---Av~~iM~~Vd~VllG 529 (653)
..|++-+..+++..+|....+.| -+|++... .+.|- . +...|...||.++++.+ . .+...+..=+++|+
T Consensus 86 ~~v~fsSG~~Ai~~al~~ll~~G--d~VI~~~~--~y~~t~~~~~~~l~~~Gi~v~~vd~~~d~e~l~~~l~~~tk~V~- 160 (437)
T PRK05613 86 HAVAFASGQAAETAAILNLAGAG--DHIVTSPR--LYGGTETLFLVTLNRLGIEVTFVENPDDPESWQAAVQPNTKAFF- 160 (437)
T ss_pred eEEEeCCHHHHHHHHHHHhcCCC--CEEEECCC--ccHHHHHHHHHHHHhcCeEEEEECCCCCHHHHHHhCCccCeEEE-
Confidence 34555555555555555444333 35666522 33332 2 23567778999888852 2 23333432233333
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCCeeeec
Q 006256 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (653)
Q Consensus 530 AdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~a 563 (653)
.+.+..+-..+. ---.|+-+||++|++|+|=+
T Consensus 161 ~e~~~Np~~~v~--di~~I~~la~~~gi~livD~ 192 (437)
T PRK05613 161 GETFANPQADVL--DIPAVAEVAHRNQVPLIVDN 192 (437)
T ss_pred EECCCCCCCccc--CHHHHHHHHHHcCCeEEEEC
Confidence 233322211222 34567788999999987733
No 81
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=61.11 E-value=1.4e+02 Score=32.80 Aligned_cols=103 Identities=17% Similarity=0.206 Sum_probs=51.4
Q ss_pred CCCEEEEeCChHHHHHHHHHHHH--cCCeeEEEEeCCCCCchHHHHH-HHHHhCCCCEEEEccc--------hHHHHhhh
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHE--LGKQFRVVIVDSRPKHEGKLLL-RRLVRKGLSCTYTHIN--------AISYIIHE 522 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e--~gk~f~ViV~ESRP~~EG~~La-~eL~~~GI~vT~I~Ds--------Av~~iM~~ 522 (653)
...+++|.|.+..+..+|..+.. .++.-+|++.+ +.+.....+ ..|...|+++.++... .+...+.+
T Consensus 64 ~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~Vi~~~--~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~ 141 (402)
T TIGR02006 64 SREIVFTSGATESNNLAIKGIAHFYKSKGNHIITSK--TEHKAVLDTCRYLEREGFEVTYLPPKSNGLIDLEELKAAIRD 141 (402)
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEECC--CccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhcCC
Confidence 34577776666666555544321 12334566653 344433333 4566679998888532 12222221
Q ss_pred ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 523 Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
-+++++-...=...| ++..+ ..|+-+|+.|++.|+|
T Consensus 142 ~~~lv~v~~~~n~tG-~~~~~--~~I~~l~~~~g~~liv 177 (402)
T TIGR02006 142 DTILVSIMHVNNEIG-VIQDI--AAIGEICRERKVFFHV 177 (402)
T ss_pred CCEEEEEECCCcCce-ecccH--HHHHHHHHHcCCEEEE
Confidence 122222222111223 22332 3588889999988876
No 82
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=60.86 E-value=1.2e+02 Score=32.14 Aligned_cols=100 Identities=19% Similarity=0.160 Sum_probs=50.8
Q ss_pred CCEEEEeCC-hHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc--------chHHHHhh--hc
Q 006256 455 GDVLLTYGS-SSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIH--EV 523 (653)
Q Consensus 455 GdvILT~g~-Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D--------sAv~~iM~--~V 523 (653)
...++..++ +.++..++...... .-+|++.+ +..-+..+...+...|.+++++.. ..+...+. +.
T Consensus 50 ~~~~~~~~~~t~al~~~~~~~~~~--g~~vl~~~--~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~~~~ 125 (356)
T cd06451 50 GLTFLLSGSGTGAMEAALSNLLEP--GDKVLVGV--NGVFGDRWADMAERYGADVDVVEKPWGEAVSPEEIAEALEQHDI 125 (356)
T ss_pred CCEEEEecCcHHHHHHHHHHhCCC--CCEEEEec--CCchhHHHHHHHHHhCCCeEEeecCCCCCCCHHHHHHHHhccCC
Confidence 344444444 45554445443333 34566654 222232233445567888777631 13333332 44
Q ss_pred cEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeee
Q 006256 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (653)
Q Consensus 524 d~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~ 562 (653)
.+|++ .+.-...|.+.. --.++-+|+++++++++=
T Consensus 126 ~~v~i-~~~~~~~G~~~~---~~~i~~~a~~~~~~li~D 160 (356)
T cd06451 126 KAVTL-THNETSTGVLNP---LEGIGALAKKHDALLIVD 160 (356)
T ss_pred CEEEE-eccCCCcccccC---HHHHHHHHHhcCCEEEEe
Confidence 45544 333334554433 334777889999888763
No 83
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=60.33 E-value=75 Score=34.56 Aligned_cols=97 Identities=22% Similarity=0.262 Sum_probs=53.1
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHH-HH-HHHHhCCCCEEEEccch---HHHHhh-hccEEEEc
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKL-LL-RRLVRKGLSCTYTHINA---ISYIIH-EVTRVFLG 529 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~-La-~eL~~~GI~vT~I~DsA---v~~iM~-~Vd~VllG 529 (653)
+.|++-+...++..+|......|. +|++.+ +.+.+.. +. ..+...|+.+.++.... +...+. +..+|++
T Consensus 57 ~a~~~~sG~~Ai~~~l~~l~~~gd--~Vl~~~--~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~- 131 (369)
T cd00614 57 AALAFSSGMAAISTVLLALLKAGD--HVVASD--DLYGGTYRLFERLLPKLGIEVTFVDPDDPEALEAAIKPETKLVYV- 131 (369)
T ss_pred CEEEEcCHHHHHHHHHHHHcCCCC--EEEECC--CCcchHHHHHHHHHhhcCeEEEEeCCCCHHHHHHhcCCCCeEEEE-
Confidence 556665555566666665544443 444433 4554533 33 34557899998885432 333332 3444544
Q ss_pred ceeEec-CCCeecccchHHHHHHHhhCCCCeee
Q 006256 530 ASSVLS-NGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 530 AdaIla-NG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
+.+.. .|.+.. --.++-+||.||++++|
T Consensus 132 -e~~~np~g~~~d---l~~i~~la~~~g~~liv 160 (369)
T cd00614 132 -ESPTNPTLKVVD---IEAIAELAHEHGALLVV 160 (369)
T ss_pred -ECCCCCCCeecC---HHHHHHHHHHcCCEEEE
Confidence 22322 233322 23577789999998876
No 84
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=59.42 E-value=1.3e+02 Score=26.69 Aligned_cols=94 Identities=17% Similarity=0.155 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHcCCeeEEE-EeCCCC---CchHHHHH----HHHHhCCCCEEEEccchH-HHHhh-----hccEEEEcce
Q 006256 466 AVEMILQHAHELGKQFRVV-IVDSRP---KHEGKLLL----RRLVRKGLSCTYTHINAI-SYIIH-----EVTRVFLGAS 531 (653)
Q Consensus 466 ~Ve~vL~~A~e~gk~f~Vi-V~ESRP---~~EG~~La----~eL~~~GI~vT~I~DsAv-~~iM~-----~Vd~VllGAd 531 (653)
+|...+..|.+.+..++++ |.+... ..+..+.. +.+.+.|+++..+..... .-++. ++|.+++|++
T Consensus 15 al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~dllviG~~ 94 (124)
T cd01987 15 LIRRAARLADRLKAPWYVVYVETPRLNRLSEAERRRLAEALRLAEELGAEVVTLPGDDVAEAIVEFAREHNVTQIVVGKS 94 (124)
T ss_pred HHHHHHHHHHHhCCCEEEEEEecCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHHcCCCEEEeCCC
Confidence 4444444454445555544 444332 12344432 345567888766644333 22332 5899999998
Q ss_pred eEecCCCeec-ccchHHHHHHHhhCCCCeeee
Q 006256 532 SVLSNGTVCS-RVGTACVAMVAYGFHIPVLVC 562 (653)
Q Consensus 532 aIlaNG~V~N-KiGT~~lAl~Ak~~~VPVyV~ 562 (653)
.- |.+-. -.|+..--++-+.-++||+|+
T Consensus 95 ~~---~~~~~~~~Gs~~~~v~~~a~~~~v~v~ 123 (124)
T cd01987 95 RR---SRWRELFRGSLVDRLLRRAGNIDVHIV 123 (124)
T ss_pred CC---chHHHHhcccHHHHHHHhCCCCeEEEe
Confidence 53 22222 235444444333348999886
No 85
>PTZ00357 methyltransferase; Provisional
Probab=59.21 E-value=81 Score=38.22 Aligned_cols=63 Identities=13% Similarity=0.162 Sum_probs=43.3
Q ss_pred EEEEeC--ChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHH---hC-------CCCEEEEccchHHHHh
Q 006256 457 VLLTYG--SSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLV---RK-------GLSCTYTHINAISYII 520 (653)
Q Consensus 457 vILT~g--~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~---~~-------GI~vT~I~DsAv~~iM 520 (653)
+|++.| ++.+|..+|+.+.+.|.+++||++|=-|..-=.-+ ..+. .. |-.|++|...|=.+-.
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tl-lr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~ 777 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTR-MRWANDPEWTQLAYTFGHTLEVIVADGRTIAT 777 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHH-HHHhcccccccccccCCCeEEEEeCccccccc
Confidence 466665 56799999999999999999999998865321111 1111 12 5579999877766543
No 86
>PRK09932 glycerate kinase II; Provisional
Probab=59.15 E-value=12 Score=41.92 Aligned_cols=62 Identities=19% Similarity=0.205 Sum_probs=45.3
Q ss_pred hHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeecccccc
Q 006256 493 EGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKF 568 (653)
Q Consensus 493 EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~aetyKf 568 (653)
.|.++.-++.. +-..|+.+|+||.|=-++-. ....--..+.+|-+|+.|+|||+++|.+...
T Consensus 267 ~G~d~v~~~~~------------l~~~l~~ADlVITGEG~~D~--Qt~~GK~p~~Va~~A~~~~~Pvi~i~G~~~~ 328 (381)
T PRK09932 267 PGIEIVLNAVN------------LEQAVQGAALVITGEGRIDS--QTAGGKAPLGVASVAKQFNVPVIGIAGVLGD 328 (381)
T ss_pred cHHHHHHHhcC------------hHHHhccCCEEEECCCcccc--cccCCccHHHHHHHHHHcCCCEEEEecccCC
Confidence 67887766543 23567789999999776643 2333345677888999999999999998644
No 87
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=58.56 E-value=85 Score=34.67 Aligned_cols=97 Identities=21% Similarity=0.204 Sum_probs=53.6
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHHHHHHhCCCCEEEEc-c-chHHHHhh--hccEEEEcc
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLLRRLVRKGLSCTYTH-I-NAISYIIH--EVTRVFLGA 530 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La~eL~~~GI~vT~I~-D-sAv~~iM~--~Vd~VllGA 530 (653)
+.|+|-+...++..+|......|. +|++. .|.+.+. .+.+.+...|++++++. | ..+...+. +..+|++
T Consensus 70 ~~l~~~sG~~Ai~~~l~~ll~~GD--~Vlv~--~~~y~~~~~~~~~~~~~g~~v~~~~~d~~~l~~~i~~~~tklV~i-- 143 (385)
T PRK08574 70 DALAFNSGMAAISTLFFSLLKAGD--RVVLP--MEAYGTTLRLLKSLEKFGVKVVLAYPSTEDIIEAIKEGRTKLVFI-- 143 (385)
T ss_pred cEEEeCCHHHHHHHHHHHHhCCCC--EEEEc--CCCchhHHHHHHHhhccCcEEEEECCCHHHHHHhcCccCceEEEE--
Confidence 556665555566556655554443 45543 4555443 44455667788887753 2 23444443 3444443
Q ss_pred eeEe-cCCCeecccchHHHHHHHhhCCCCeee
Q 006256 531 SSVL-SNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 531 daIl-aNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
+.+. .+|.++. --.|+-+||.++++++|
T Consensus 144 e~p~NPtG~v~d---l~~I~~la~~~gi~liv 172 (385)
T PRK08574 144 ETMTNPTLKVID---VPEVAKAAKELGAILVV 172 (385)
T ss_pred ECCCCCCCEecC---HHHHHHHHHHcCCEEEE
Confidence 3322 2344444 23677789999998876
No 88
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=58.48 E-value=2.7e+02 Score=30.28 Aligned_cols=132 Identities=16% Similarity=0.101 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--CCEEEEeCChHHHHHHHHHHHHcCCeeEEEEe-CCCCCchHHH
Q 006256 420 EAKATLHSDIERFINEKIILADRVIVKHAVTKIRD--GDVLLTYGSSSAVEMILQHAHELGKQFRVVIV-DSRPKHEGKL 496 (653)
Q Consensus 420 eaK~~L~e~I~~fi~E~i~~a~~~Ia~~a~~~I~d--GdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~-ESRP~~EG~~ 496 (653)
+.++...+.++.|-- -....+.+.+..+++..- ..+++|-|...++..++......| -.|++. -.+|.+--..
T Consensus 37 ~~~~~~~~~~~~~~g--~~~~~~~Le~~lA~~~g~~~e~ilv~~gg~~a~~~~~~al~~~g--d~Vli~~~d~p~~~s~~ 112 (346)
T TIGR03576 37 KIDEEDLELLETYVG--PAIFEEKVQELGREHLGGPEEKILVFNRTSSAILATILALEPPG--RKVVHYLPEKPAHPSIP 112 (346)
T ss_pred hHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHcCCCcceEEEECCHHHHHHHHHHHhCCCC--CEEEECCCCCCCchhHH
Confidence 445555566655510 011223344444455532 456666666667766665554333 356553 2356543322
Q ss_pred HHHHHHhCCCCEEEEccc-hHHHHhhhccEEEE-cceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 497 LLRRLVRKGLSCTYTHIN-AISYIIHEVTRVFL-GASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 497 La~eL~~~GI~vT~I~Ds-Av~~iM~~Vd~Vll-GAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
- .+.-.|.++....|- .+. ..++..+|++ | -..+|+++.+.=-..++-+|+.|++.|+|
T Consensus 113 ~--~~~l~ga~~~~~~~l~~l~-~~~~~~lIiitg---~s~~G~v~~~~~L~~i~~la~~~~~~liv 173 (346)
T TIGR03576 113 R--SCKLAGAEYFESDELSELK-KIDGTSLVVITG---STMDLKVVSEEDLKRVIKQAKSKEAIVLV 173 (346)
T ss_pred H--HHHHcCCEEeccCCHHHHh-hCcCceEEEEEC---CCCCCcccCHHHHHHHHHHHHHcCCEEEE
Confidence 2 222245554333221 111 1123344554 2 13345565544444566678889987664
No 89
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=58.42 E-value=76 Score=34.92 Aligned_cols=103 Identities=16% Similarity=0.242 Sum_probs=52.4
Q ss_pred ccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc----------hHHHHhh
Q 006256 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN----------AISYIIH 521 (653)
Q Consensus 452 I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds----------Av~~iM~ 521 (653)
+....+++|.|.+.++..++....+.| -+|++. .|.+.+.. ..+...|+++.++... .+-..+.
T Consensus 102 ~~~~~i~it~G~~~al~~~~~~~~~~g--d~vlv~--~P~y~~~~--~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~ 175 (412)
T PTZ00433 102 IKKDNVVLCSGVSHAILMALTALCDEG--DNILVP--APGFPHYE--TVCKAYGIEMRFYNCRPEKDWEADLDEIRRLVD 175 (412)
T ss_pred CChhhEEEeCChHHHHHHHHHHhcCCC--CEEEEc--cCCcccHH--HHHHHcCCEEEEEecCccccCcCCHHHHHHHhc
Confidence 445678899998888865555443333 244443 36655543 3355678888777421 1111121
Q ss_pred -hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 522 -~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
++.+|++ +.-=-..|.++++-=-..++-+|++|++.+++
T Consensus 176 ~~~~~i~~-~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~ 215 (412)
T PTZ00433 176 DRTKALIM-TNPSNPCGSNFSRKHVEDIIRLCEELRLPLIS 215 (412)
T ss_pred cCceEEEE-eCCCCCCCcccCHHHHHHHHHHHHHcCCeEEE
Confidence 3334433 11111123333222234556678888887654
No 90
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=58.24 E-value=86 Score=34.34 Aligned_cols=110 Identities=13% Similarity=0.099 Sum_probs=66.5
Q ss_pred HHHHHHHHhccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCC----------Cc------hH----HHHHHHHH
Q 006256 443 VIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRP----------KH------EG----KLLLRRLV 502 (653)
Q Consensus 443 ~Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP----------~~------EG----~~La~eL~ 502 (653)
.|+..+.++|. +..||..|.+.+=..++..+...|.. ++.++|..- ++ +| ..++++|.
T Consensus 13 ~~G~~~Q~~L~-~~~VlIiG~GglGs~va~~La~aGvg-~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~ 90 (338)
T PRK12475 13 GIGEEGQRKIR-EKHVLIVGAGALGAANAEALVRAGIG-KLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLR 90 (338)
T ss_pred hcCHHHHHhhc-CCcEEEECCCHHHHHHHHHHHHcCCC-EEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHH
Confidence 36777778886 46789999876544445555556764 333333322 00 12 11225555
Q ss_pred hC--CCCEEEEcc----chHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeec
Q 006256 503 RK--GLSCTYTHI----NAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (653)
Q Consensus 503 ~~--GI~vT~I~D----sAv~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~a 563 (653)
+. ++.++.+.. ..+..++.++|.||.+.|.... -+.+.-+|+.+++|++.++
T Consensus 91 ~inp~v~i~~~~~~~~~~~~~~~~~~~DlVid~~D~~~~---------r~~in~~~~~~~ip~i~~~ 148 (338)
T PRK12475 91 KINSEVEIVPVVTDVTVEELEELVKEVDLIIDATDNFDT---------RLLINDLSQKYNIPWIYGG 148 (338)
T ss_pred HHCCCcEEEEEeccCCHHHHHHHhcCCCEEEEcCCCHHH---------HHHHHHHHHHcCCCEEEEE
Confidence 44 566655431 3345567789999998875432 2557788999999998653
No 91
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=58.13 E-value=1.3e+02 Score=32.94 Aligned_cols=97 Identities=19% Similarity=0.204 Sum_probs=52.3
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHH-HHHHhCCCCEEEEccchHHHHhh----hccEEEEc
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHINAISYIIH----EVTRVFLG 529 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La-~eL~~~GI~vT~I~DsAv~~iM~----~Vd~VllG 529 (653)
+.+++-+.+.++..+|....+.|. +|++. ++.+.+. .+. ..+...|+.++++.......+.. +..+|++-
T Consensus 71 ~~~~~~sG~~Ai~~al~al~~~Gd--~Vl~~--~~~~~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~le 146 (380)
T TIGR01325 71 RAVATATGMSAIQAALMTLLQAGD--HVVAS--RSLFGSTVGFISEILPRFGIEVSFVDPTDLNAWEAAVKPNTKLVFVE 146 (380)
T ss_pred cEEEECCHHHHHHHHHHHHhCCCC--EEEEe--cCCcchHHHHHHHHHHHhCCEEEEECCCCHHHHHHhcCCCceEEEEE
Confidence 456655555567666655544444 45553 4444443 333 45677899999886433333222 33344431
Q ss_pred ceeEe-cCCCeecccchHHHHHHHhhCCCCeee
Q 006256 530 ASSVL-SNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 530 AdaIl-aNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
... ..|.+.. --.++-+||.+|++|+|
T Consensus 147 --~p~np~g~~~d---l~~I~~la~~~gi~liv 174 (380)
T TIGR01325 147 --TPSNPLGELVD---IAALAELAHAIGALLVV 174 (380)
T ss_pred --CCCCCCCeeeC---HHHHHHHHHHcCCEEEE
Confidence 111 1233322 24567778999998876
No 92
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=57.27 E-value=1.1e+02 Score=34.25 Aligned_cols=98 Identities=18% Similarity=0.244 Sum_probs=56.2
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHH-HHHHhCCCCEEEEccc---hHHHHhh-hccEEEEc
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLG 529 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La-~eL~~~GI~vT~I~Ds---Av~~iM~-~Vd~VllG 529 (653)
+.|+|-+.+.++..+|..+.+.|. +|++. .+.+.|. .+. ..+...|+.++++... .+-..+. +..+|++
T Consensus 74 ~~v~~~sG~~Ai~~al~~l~~~Gd--~Vl~~--~~~y~~t~~~~~~~~~~~G~~v~~v~~~d~~~l~~~l~~~t~~V~l- 148 (418)
T TIGR01326 74 AALAVASGQAAITYAILNLAQAGD--NIVSS--SYLYGGTYNLFKHTLKRLGIEVRFVDPDDPEEFEKAIDENTKAVFA- 148 (418)
T ss_pred eEEEEccHHHHHHHHHHHHhCCCC--EEEEE--CCCcHHHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcCcCCeEEEE-
Confidence 567766666677667766655444 56554 3566553 232 4567789999888632 2333332 4555554
Q ss_pred ceeEe-cCCCeecccchHHHHHHHhhCCCCeeee
Q 006256 530 ASSVL-SNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (653)
Q Consensus 530 AdaIl-aNG~V~NKiGT~~lAl~Ak~~~VPVyV~ 562 (653)
+... .+|.+.. --.++-+|++|+++++|=
T Consensus 149 -e~p~NPtg~v~d---l~~I~~la~~~~i~livD 178 (418)
T TIGR01326 149 -ETIGNPAINVPD---IEAIAEVAHAHGVPLIVD 178 (418)
T ss_pred -ECCCCCCCeecC---HHHHHHHHHHcCCEEEEE
Confidence 2221 1233332 245677899999988763
No 93
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=57.08 E-value=1.1e+02 Score=33.69 Aligned_cols=99 Identities=15% Similarity=0.126 Sum_probs=50.6
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHHH-HHHhCCCCEEEEccc---hHHHHhh-hccEEEEc
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLLR-RLVRKGLSCTYTHIN---AISYIIH-EVTRVFLG 529 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La~-eL~~~GI~vT~I~Ds---Av~~iM~-~Vd~VllG 529 (653)
+.|++-+...++..++. ..+.| -+|++.+ +.+.|. .+.. .+...|+.++++... .+-..+. +..+|++-
T Consensus 64 ~~l~~~sG~~al~~~l~-ll~~G--d~Vl~~~--~~y~~~~~~~~~~~~~~G~~v~~vd~~d~~~le~~i~~~tklv~le 138 (378)
T TIGR01329 64 RAFAFSSGMAALDVITR-LLNNG--DEIIAGD--DLYGGTDRLLTQVVPRSGVVVVHVDTTDLDKVKAALGPKTKLVLLE 138 (378)
T ss_pred cEEEECCHHHHHHHHHH-HhCCC--CEEEEcC--CCchHHHHHHHHHHHHcCcEEEEeCCCCHHHHHHhcCcCceEEEEE
Confidence 45555554556654443 44333 3566643 455553 3333 356689999988633 2222232 23333321
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCCeeeec
Q 006256 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (653)
Q Consensus 530 AdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~a 563 (653)
.---..|.+.. --.++-+||+|+++++|=+
T Consensus 139 -~psnptg~v~d---l~~I~~la~~~g~~vivD~ 168 (378)
T TIGR01329 139 -SPTNPLQKIVD---IRKISEMAHAQNALVVVDN 168 (378)
T ss_pred -CCCCCCCeeec---HHHHHHHHHHcCCEEEEEC
Confidence 11112333332 3456778899998877643
No 94
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=56.77 E-value=56 Score=35.12 Aligned_cols=94 Identities=15% Similarity=0.031 Sum_probs=55.9
Q ss_pred ccCCCEEEEeCChHHHHHHHHHH-HHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHh-hhccEEEEc
Q 006256 452 IRDGDVLLTYGSSSAVEMILQHA-HELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYII-HEVTRVFLG 529 (653)
Q Consensus 452 I~dGdvILT~g~Ss~Ve~vL~~A-~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM-~~Vd~VllG 529 (653)
+...++++|.|.+..+..++... .+.|. .|+| + .|.+-+.... +...|..+..+.|- ..+- .+...|++
T Consensus 78 ~~~~~I~it~G~~~~i~~~~~~l~~~~gd--~Vl~-~-~p~y~~~~~~--~~~~g~~~~~v~~~--~~l~~~~~~~v~~- 148 (357)
T TIGR03539 78 LDPTAVLPVIGTKELVAWLPTLLGLGPGD--TVVI-P-ELAYPTYEVG--ALLAGATPVAADDP--TELDPVGPDLIWL- 148 (357)
T ss_pred CCcCeEEEccChHHHHHHHHHHHcCCCCC--EEEE-C-CCCcHHHHHH--HHhcCCEEeccCCh--hhcCccCccEEEE-
Confidence 55568899999999886655544 23332 4444 3 6777666544 33468877776431 1111 12233332
Q ss_pred ceeEecCCCeecccchHH-------HHHHHhhCCCCeee
Q 006256 530 ASSVLSNGTVCSRVGTAC-------VAMVAYGFHIPVLV 561 (653)
Q Consensus 530 AdaIlaNG~V~NKiGT~~-------lAl~Ak~~~VPVyV 561 (653)
+ ...|..|+.. ++-+|++|++.+++
T Consensus 149 ------~-~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~ 180 (357)
T TIGR03539 149 ------N-SPGNPTGRVLSVDELRAIVAWARERGAVVAS 180 (357)
T ss_pred ------e-CCCCCcCccCCHHHHHHHHHHHHHcCeEEEE
Confidence 3 3678888633 66778999988774
No 95
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=56.50 E-value=1.5e+02 Score=31.51 Aligned_cols=102 Identities=19% Similarity=0.170 Sum_probs=53.5
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHc--CCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc--------chHHHHhhhc
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHEL--GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIHEV 523 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~--gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D--------sAv~~iM~~V 523 (653)
+...++|-|.+.++..++..+... ++.-+|++.+. .+-. +.+.+...|+++..+.. ..+-..+.+-
T Consensus 76 ~~~~~~~~ggt~a~~~a~~~~~~~~~~~~~~vl~~~~--~h~s--~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~ 151 (371)
T PRK13520 76 DAYGYITSGGTEANIQAVRAARNLAKAEKPNIVVPES--AHFS--FDKAADMLGVELRRAPLDDDYRVDVKAVEDLIDDN 151 (371)
T ss_pred CCCeEEecCcHHHHHHHHHHHHhhccCCCceEEecCc--chHH--HHHHHHHcCceEEEecCCCCCcCCHHHHHHHHhhC
Confidence 345677766666665655555442 23346777663 2211 22333456888887752 1232333222
Q ss_pred cEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeee
Q 006256 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (653)
Q Consensus 524 d~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~ 562 (653)
+..++....-...|.+.. --.++-+|++|++.|+|=
T Consensus 152 ~~~vi~~~~~~~tG~~~~---l~~I~~l~~~~g~~livD 187 (371)
T PRK13520 152 TIGIVGIAGTTELGQVDP---IPELSKIALENGIFLHVD 187 (371)
T ss_pred CEEEEEEcCCcCCcccCC---HHHHHHHHHHcCCCEEEE
Confidence 333333222234454433 345777899999988873
No 96
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=56.37 E-value=70 Score=34.45 Aligned_cols=103 Identities=17% Similarity=0.119 Sum_probs=68.8
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcceeEec
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLS 535 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAdaIla 535 (653)
|..+..-....|..+|+++.+.|.+.-|++.+.-+..+.++|.....+.|| .++=-|+++.+-........-......
T Consensus 67 DlAvi~vp~~~v~~~l~e~~~~gvk~avI~s~Gf~~~~~~~l~~~a~~~gi--rvlGPNc~Gi~~~~~~~~~~~~~~~~~ 144 (291)
T PRK05678 67 NASVIYVPPPFAADAILEAIDAGIDLIVCITEGIPVLDMLEVKAYLERKKT--RLIGPNCPGIITPGECKIGIMPGHIHK 144 (291)
T ss_pred CEEEEEcCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCC--EEECCCCCcccccccceeeecCCCCCC
Confidence 555555555666688999999998888898888776556777777777776 455556666554433322221212233
Q ss_pred CC--CeecccchHHHHHH--HhhCCCCee
Q 006256 536 NG--TVCSRVGTACVAMV--AYGFHIPVL 560 (653)
Q Consensus 536 NG--~V~NKiGT~~lAl~--Ak~~~VPVy 560 (653)
-| ++++..|+...+++ ++..++-|-
T Consensus 145 ~G~valiSQSGal~~~~~~~~~~~giG~s 173 (291)
T PRK05678 145 KGRVGVVSRSGTLTYEAVAQLTDLGFGQS 173 (291)
T ss_pred CCCEEEEeccHHHHHHHHHHHHHcCCCeE
Confidence 45 57899999888876 677777663
No 97
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=56.30 E-value=29 Score=41.17 Aligned_cols=50 Identities=32% Similarity=0.360 Sum_probs=33.9
Q ss_pred CChHHHHHHHHHHHHcCCeeEEEEe-CCCCCch-HHHHHHHHHhCCCCEEEEc
Q 006256 462 GSSSAVEMILQHAHELGKQFRVVIV-DSRPKHE-GKLLLRRLVRKGLSCTYTH 512 (653)
Q Consensus 462 g~Ss~Ve~vL~~A~e~gk~f~ViV~-ESRP~~E-G~~La~eL~~~GI~vT~I~ 512 (653)
+.|..| ..|.+|+++||+..|.|= -.|=..| -...|+.|.++|+.|.|-.
T Consensus 382 ~dSpIV-~ALi~AA~nGKqVtvlVELkARFDEE~NI~WAk~LE~AGvhVvyG~ 433 (696)
T COG0855 382 KDSPIV-RALIDAAENGKQVTVLVELKARFDEEANIHWAKRLERAGVHVVYGV 433 (696)
T ss_pred CCCHHH-HHHHHHHHcCCeEEEEEEEhhhcChhhhhHHHHHHHhCCcEEEecc
Confidence 447777 456677788999888762 2332222 2455799999999998853
No 98
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=55.94 E-value=11 Score=37.56 Aligned_cols=66 Identities=15% Similarity=0.173 Sum_probs=51.0
Q ss_pred HHHHHHHhCCCCEEEEccchHHH-HhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeec
Q 006256 496 LLLRRLVRKGLSCTYTHINAISY-IIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (653)
Q Consensus 496 ~La~eL~~~GI~vT~I~DsAv~~-iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~a 563 (653)
.++..|.+.|+.|++...+++.. -+...|+||+||.--+ |..-..++.+.-.....-.+.|+-+.|
T Consensus 20 ~iA~~L~e~g~qvdi~dl~~~~~~~l~~ydavVIgAsI~~--~h~~~~~~~Fv~k~~e~L~~kP~A~f~ 86 (175)
T COG4635 20 YIASHLRESGIQVDIQDLHAVEEPALEDYDAVVIGASIRY--GHFHEAVQSFVKKHAEALSTKPSAFFS 86 (175)
T ss_pred HHHHHhhhcCCeeeeeehhhhhccChhhCceEEEecchhh--hhhHHHHHHHHHHHHHHHhcCCceEEE
Confidence 55678999999999999999887 5678999999996543 566666777766666666788876544
No 99
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=55.57 E-value=76 Score=35.74 Aligned_cols=92 Identities=12% Similarity=0.049 Sum_probs=56.9
Q ss_pred CCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcceeEe
Q 006256 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVL 534 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAdaIl 534 (653)
+..|+.+|.+..=..+.+.+.+.| +.|++.|.++...=..++.+|.+.||.+.+-.+. .-.+.+.|.||+... |-
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G--~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~--~~~~~~~dlVV~Spg-i~ 88 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLG--AKVTAFDKKSEEELGEVSNELKELGVKLVLGENY--LDKLDGFDVIFKTPS-MR 88 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCC--CEEEEECCCCCccchHHHHHHHhCCCEEEeCCCC--hHHhccCCEEEECCC-CC
Confidence 568899988764334444454445 5889999876433223445688889877654332 233467898887632 22
Q ss_pred cCCCeecccchHHHHHHHhhCCCCee
Q 006256 535 SNGTVCSRVGTACVAMVAYGFHIPVL 560 (653)
Q Consensus 535 aNG~V~NKiGT~~lAl~Ak~~~VPVy 560 (653)
.+ ...-..|++.++|++
T Consensus 89 ~~---------~p~~~~a~~~~i~i~ 105 (458)
T PRK01710 89 ID---------SPELVKAKEEGAYIT 105 (458)
T ss_pred CC---------chHHHHHHHcCCcEE
Confidence 22 345566777888876
No 100
>PLN02409 serine--glyoxylate aminotransaminase
Probab=55.28 E-value=1.1e+02 Score=33.74 Aligned_cols=98 Identities=15% Similarity=0.121 Sum_probs=50.2
Q ss_pred CEEEEeCChH-HHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc--------hHHHHhh-----
Q 006256 456 DVLLTYGSSS-AVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN--------AISYIIH----- 521 (653)
Q Consensus 456 dvILT~g~Ss-~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds--------Av~~iM~----- 521 (653)
++|++.+.++ .++.++....+.| -+|++.+ +..-+..+...+...|+++..+... .+-..+.
T Consensus 61 ~~vi~~~~gt~a~~~a~~~~~~~G--d~Vlv~~--~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~l~~~~~~ 136 (401)
T PLN02409 61 TPFIFPTTGTGAWESALTNTLSPG--DKVVSFR--IGQFSLLWIDQMQRLNFDVDVVESPWGQGADLDILKSKLRQDTNH 136 (401)
T ss_pred CEEEEeCCcHHHHHHHHHhcCCCC--CEEEEeC--CCchhHHHHHHHHHcCCceEEEECCCCCCCCHHHHHHHHhhCcCC
Confidence 4555554443 4444444444333 3577766 3444555555566678888877421 2222333
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHH--HhhCCCCeee
Q 006256 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMV--AYGFHIPVLV 561 (653)
Q Consensus 522 ~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~--Ak~~~VPVyV 561 (653)
++..|++ .+.-...|.+.. -..++-+ |+.+++.++|
T Consensus 137 ~~k~v~~-~~~~~~tG~~~~---~~~i~~l~~~~~~g~~~vv 174 (401)
T PLN02409 137 KIKAVCV-VHNETSTGVTND---LAGVRKLLDCAQHPALLLV 174 (401)
T ss_pred CccEEEE-EeecccccccCC---HHHHHHHHhhhccCcEEEE
Confidence 2334444 343334554443 2234555 8888877665
No 101
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=54.99 E-value=1.1e+02 Score=27.67 Aligned_cols=100 Identities=13% Similarity=0.121 Sum_probs=51.8
Q ss_pred cCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHH-------HH---h--
Q 006256 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAIS-------YI---I-- 520 (653)
Q Consensus 453 ~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~-------~i---M-- 520 (653)
....+++|.|.+.++..++..+.. ...+|++.+. .+.|... ..+...|.++.++....-. .+ .
T Consensus 16 ~~~~~~~~~~~t~a~~~~~~~~~~--~~~~v~~~~~--~~~~~~~-~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~ 90 (170)
T cd01494 16 GNDKAVFVPSGTGANEAALLALLG--PGDEVIVDAN--GHGSRYW-VAAELAGAKPVPVPVDDAGYGGLDVAILEELKAK 90 (170)
T ss_pred CCCcEEEeCCcHHHHHHHHHHhCC--CCCEEEEeec--ccceehh-hHHHhcCCEEEEeccCCCCccchhhhhhhhcccc
Confidence 445677777777777666666543 2345666553 2223321 3445667777766422111 11 1
Q ss_pred hhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 521 HEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 521 ~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
.+...|++.. ...+++....+ -.++-+|+.+++++++
T Consensus 91 ~~~~~v~~~~--~~~~~g~~~~~--~~l~~~~~~~~~~li~ 127 (170)
T cd01494 91 PNVALIVITP--NTTSGGVLVPL--KEIRKIAKEYGILLLV 127 (170)
T ss_pred CceEEEEEec--CcCCCCeEcCH--HHHHHHHHHcCCEEEE
Confidence 1233333321 12222222222 5688888999998876
No 102
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=54.83 E-value=3e+02 Score=30.84 Aligned_cols=95 Identities=17% Similarity=0.216 Sum_probs=52.8
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHcC-CeeEEEEe-CCCCCchHHHHHHHHHhCCCCE--E---EEccc----hHHHHhh-
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHELG-KQFRVVIV-DSRPKHEGKLLLRRLVRKGLSC--T---YTHIN----AISYIIH- 521 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~g-k~f~ViV~-ESRP~~EG~~La~eL~~~GI~v--T---~I~Ds----Av~~iM~- 521 (653)
.|..++.++.+..+..++..+.+.| -..-+..+ -..+..++..+.+++...|+.. . ++.|. .+..+++
T Consensus 292 ~Gk~~~i~~~~~~~~~~~~~l~elG~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ 371 (426)
T cd01972 292 KGKKAIVETGAAYGHLLIAVLRELGFGEVPVVLVFHHDPTYDRGDSEKDLLEHGVDPEIDITKYTVSNGQYYQFYNLLKR 371 (426)
T ss_pred CCCEEEEEeCCccHHHHHHHHHHcCCceEEEEEeccCchhhhcchhHHHHhcCCcccccccceeeecCCCHHHHHHHHHH
Confidence 5888888877665556666677778 54443333 2344445444445666767632 2 54555 3444454
Q ss_pred -hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeee
Q 006256 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (653)
Q Consensus 522 -~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~ 562 (653)
+.|.+|.+. +- .. ...|+..|+|++-+
T Consensus 372 ~~pDl~i~~~-------~~------~~-~~~~~~~gip~~~~ 399 (426)
T cd01972 372 VKPDFIIFRH-------GG------LF-PDATVYLGIPVVPL 399 (426)
T ss_pred hCCCEEEEcC-------CC------cc-HHHHHhcCCCEEec
Confidence 356555432 11 11 12347799999866
No 103
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=54.75 E-value=2.4e+02 Score=30.52 Aligned_cols=103 Identities=17% Similarity=0.222 Sum_probs=50.1
Q ss_pred CCEEEEeCChHHHHHHHHHHHH--cCCeeEEEEeCCCCCchHHHHH-HH-HHhCCCCEEEEccc-----hHHHHhh----
Q 006256 455 GDVLLTYGSSSAVEMILQHAHE--LGKQFRVVIVDSRPKHEGKLLL-RR-LVRKGLSCTYTHIN-----AISYIIH---- 521 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~e--~gk~f~ViV~ESRP~~EG~~La-~e-L~~~GI~vT~I~Ds-----Av~~iM~---- 521 (653)
.++++|.|.+..+..++..... .+..-+|++.+.- +-+.... +. ....|+.+.++... .+-.+..
T Consensus 81 ~~v~~~~g~t~~l~~~~~~~~~~~~~~g~~vl~~~~~--~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~ 158 (403)
T TIGR01979 81 EEIVFTRGTTESINLVAYSWGDSNLKAGDEIVISEME--HHANIVPWQLLAERTGATLKFIPLDDDGTLDLDDLEKLLTE 158 (403)
T ss_pred CeEEEeCCHHHHHHHHHHHhhhhcCCCCCEEEECcch--hhHHHHHHHHHHHhcCcEEEEEecCCCCCCCHHHHHHHhcc
Confidence 3577776666666544443211 1233466665432 2222222 22 34578888777421 1222222
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeec
Q 006256 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (653)
Q Consensus 522 ~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~a 563 (653)
+..+|++. +.-...|.+.. -..|+-+|++|+++++|=+
T Consensus 159 ~~~lv~~~-~~~~~tG~~~~---~~~i~~~~~~~~~~~ivD~ 196 (403)
T TIGR01979 159 KTKLVAIT-HVSNVLGTVNP---VEEIAKLAHQVGAKVLVDG 196 (403)
T ss_pred CCeEEEEE-cccccccccCC---HHHHHHHHHHcCCEEEEEc
Confidence 23334332 22222344433 3457778899998887643
No 104
>PRK05443 polyphosphate kinase; Provisional
Probab=54.50 E-value=36 Score=40.95 Aligned_cols=50 Identities=30% Similarity=0.284 Sum_probs=35.7
Q ss_pred ChHHHHHHHHHHHHcCCeeEEEEeCCCCCch--HHHHHHHHHhCCCCEEEEcc
Q 006256 463 SSSAVEMILQHAHELGKQFRVVIVDSRPKHE--GKLLLRRLVRKGLSCTYTHI 513 (653)
Q Consensus 463 ~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~E--G~~La~eL~~~GI~vT~I~D 513 (653)
.|..| ..|..|+++|+..+|+|---.+..| ....+++|.++|+.|.|-..
T Consensus 379 ~s~iv-~aL~~Aa~~Gk~V~vlve~karfde~~n~~~~~~L~~aGv~V~y~~~ 430 (691)
T PRK05443 379 DSPIV-DALIEAAENGKQVTVLVELKARFDEEANIRWARRLEEAGVHVVYGVV 430 (691)
T ss_pred CHHHH-HHHHHHHHcCCEEEEEEccCccccHHHHHHHHHHHHHcCCEEEEccC
Confidence 35555 6788888899998888755544444 34556899999999977433
No 105
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=54.45 E-value=2.8e+02 Score=29.51 Aligned_cols=97 Identities=18% Similarity=0.060 Sum_probs=47.9
Q ss_pred ccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc---chHHHHhhh---ccE
Q 006256 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---NAISYIIHE---VTR 525 (653)
Q Consensus 452 I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D---sAv~~iM~~---Vd~ 525 (653)
+...+.|++.+.+..+..++....+.| -.|++.+ |.+.....+.. ..|.++..+.. ..+-..+.. ..+
T Consensus 97 ~~~~~~i~~~~g~~~~~~~l~~~~~~g--d~V~~~~--~~~~~~~~~~~--~~g~~~~~~~~~d~~~l~~~i~~~~~~~~ 170 (385)
T PRK05958 97 FGAERALLFSSGYAANLAVLTALAGKG--DLIVSDK--LNHASLIDGAR--LSRARVRRYPHNDVDALEALLAKWRAGRA 170 (385)
T ss_pred hCCCcEEEECcHHHHHHHHHHHhCCCC--CEEEEeC--ccCHHHHHHHH--hcCCceEEeCCCCHHHHHHHHHhccCCCe
Confidence 333456666554545444443333333 3455533 55544333333 35777666642 344444443 233
Q ss_pred EEEcceeEecCCCeecccc----hHHHHHHHhhCCCCeee
Q 006256 526 VFLGASSVLSNGTVCSRVG----TACVAMVAYGFHIPVLV 561 (653)
Q Consensus 526 VllGAdaIlaNG~V~NKiG----T~~lAl~Ak~~~VPVyV 561 (653)
+++ ... +.|..| -..++-+|+.|++.+++
T Consensus 171 lvi-~~~------~~~~~G~~~~l~~i~~ia~~~~~~li~ 203 (385)
T PRK05958 171 LIV-TES------VFSMDGDLAPLAELVALARRHGAWLLV 203 (385)
T ss_pred EEE-EEe------cccCCCCcCCHHHHHHHHHHhCCEEEE
Confidence 333 222 233333 34678889999987664
No 106
>PRK15482 transcriptional regulator MurR; Provisional
Probab=53.33 E-value=2.1e+02 Score=29.89 Aligned_cols=43 Identities=16% Similarity=-0.076 Sum_probs=34.6
Q ss_pred CCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEc
Q 006256 487 DSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLG 529 (653)
Q Consensus 487 ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllG 529 (653)
-++-..+-.++++.+.+.|+++..|+|+..+.+-+.+|.+|.-
T Consensus 191 ~sg~t~~~~~~~~~a~~~g~~iI~IT~~~~s~la~~ad~~l~~ 233 (285)
T PRK15482 191 YSGSKKEIVLCAEAARKQGATVIAITSLADSPLRRLAHFTLDT 233 (285)
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchHHhCCEEEEc
Confidence 3343445667778899999999999999988888889999864
No 107
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=52.82 E-value=74 Score=32.56 Aligned_cols=75 Identities=19% Similarity=0.243 Sum_probs=47.4
Q ss_pred EEEEeCChHHHHHHHHHHHHcCC-eeE-EEEeCCCCCchHHHHHHHHHhCCCCEEEEc----------cchHHHHhh--h
Q 006256 457 VLLTYGSSSAVEMILQHAHELGK-QFR-VVIVDSRPKHEGKLLLRRLVRKGLSCTYTH----------INAISYIIH--E 522 (653)
Q Consensus 457 vILT~g~Ss~Ve~vL~~A~e~gk-~f~-ViV~ESRP~~EG~~La~eL~~~GI~vT~I~----------DsAv~~iM~--~ 522 (653)
.||.-|+++.++.++.. .++|. +.+ ++|+-++|...+.+++ .+.||++..+. +..+...|. +
T Consensus 3 ~vl~Sg~Gsn~~al~~~-~~~~~l~~~i~~visn~~~~~~~~~A---~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~ 78 (207)
T PLN02331 3 AVFVSGGGSNFRAIHDA-CLDGRVNGDVVVVVTNKPGCGGAEYA---RENGIPVLVYPKTKGEPDGLSPDELVDALRGAG 78 (207)
T ss_pred EEEEeCCChhHHHHHHH-HHcCCCCeEEEEEEEeCCCChHHHHH---HHhCCCEEEeccccCCCcccchHHHHHHHHhcC
Confidence 57888999999775555 44453 334 4556677888776655 44599997653 234444455 5
Q ss_pred ccEEEE-cceeEec
Q 006256 523 VTRVFL-GASSVLS 535 (653)
Q Consensus 523 Vd~Vll-GAdaIla 535 (653)
+|.+++ |-..|+.
T Consensus 79 ~Dliv~agy~~il~ 92 (207)
T PLN02331 79 VDFVLLAGYLKLIP 92 (207)
T ss_pred CCEEEEeCcchhCC
Confidence 888887 4444443
No 108
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=52.70 E-value=30 Score=30.45 Aligned_cols=77 Identities=17% Similarity=0.214 Sum_probs=48.0
Q ss_pred HHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEE----EEccc---h----HHHHhh--hccEEEEcceeEec
Q 006256 469 MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCT----YTHIN---A----ISYIIH--EVTRVFLGASSVLS 535 (653)
Q Consensus 469 ~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT----~I~Ds---A----v~~iM~--~Vd~VllGAdaIla 535 (653)
.+.+...+.| |++|.+++ .++.|.+.||+|+ ++... . +..+|+ ++|+||.=-
T Consensus 4 ~~a~~l~~lG--~~i~AT~g--------Ta~~L~~~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~~----- 68 (95)
T PF02142_consen 4 PLAKRLAELG--FEIYATEG--------TAKFLKEHGIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINTP----- 68 (95)
T ss_dssp HHHHHHHHTT--SEEEEEHH--------HHHHHHHTT--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE------
T ss_pred HHHHHHHHCC--CEEEEChH--------HHHHHHHcCCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEEeC-----
Confidence 4455566555 88888764 5688999999943 33333 1 555565 689887532
Q ss_pred CCCeecc-cchHHHHHHHhhCCCCee
Q 006256 536 NGTVCSR-VGTACVAMVAYGFHIPVL 560 (653)
Q Consensus 536 NG~V~NK-iGT~~lAl~Ak~~~VPVy 560 (653)
++.--.. ...+.+--+|-.|+||.+
T Consensus 69 ~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 69 YPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp -THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred CCCcccccCCcHHHHHHHHHcCCCCc
Confidence 2222222 367888899999999975
No 109
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=52.62 E-value=71 Score=34.35 Aligned_cols=103 Identities=16% Similarity=0.130 Sum_probs=68.4
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcceeEec
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLS 535 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAdaIla 535 (653)
|..+..-....|..+|+++.+.|.+.-|++.+.-+....++|.+...+.|+ .++=-|+++.+-....+...-......
T Consensus 65 Dlavi~vpa~~v~~~l~e~~~~Gvk~avIis~Gf~e~~~~~l~~~a~~~gi--rilGPNc~Giin~~~~~~~~~~~~~~~ 142 (286)
T TIGR01019 65 NASVIFVPAPFAADAIFEAIDAGIELIVCITEGIPVHDMLKVKRYMEESGT--RLIGPNCPGIITPGECKIGIMPGHIHK 142 (286)
T ss_pred CEEEEecCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCC--EEECCCCceEEcccccceeeccccCCC
Confidence 666666666777789999999999988888888766555677777777775 445455555544433222221222333
Q ss_pred CC--CeecccchHHHHHH--HhhCCCCee
Q 006256 536 NG--TVCSRVGTACVAMV--AYGFHIPVL 560 (653)
Q Consensus 536 NG--~V~NKiGT~~lAl~--Ak~~~VPVy 560 (653)
-| ++++..|++..+++ ++..++-|.
T Consensus 143 ~G~ValiSQSG~l~~~~~~~a~~~giG~S 171 (286)
T TIGR01019 143 PGNVGIVSRSGTLTYEAVHQLTKAGFGQS 171 (286)
T ss_pred CCcEEEEeccHHHHHHHHHHHHHcCCCeE
Confidence 56 47899998888875 677787764
No 110
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=52.62 E-value=16 Score=40.82 Aligned_cols=63 Identities=17% Similarity=0.153 Sum_probs=45.0
Q ss_pred hHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeeccccccc
Q 006256 493 EGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFH 569 (653)
Q Consensus 493 EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~aetyKf~ 569 (653)
.|.++.-++.. +-..++.+|+||.|=-++-. ....--..+.+|-+|+.|+|||+++|.+....
T Consensus 266 ~G~d~v~~~~~------------l~~~l~~ADlVITGEG~~D~--Qtl~GK~p~~Va~~A~~~~vPviai~G~v~~~ 328 (375)
T TIGR00045 266 PGIDLVLELLD------------LEQKIKDADLVITGEGRLDR--QSLMGKAPVGVAKRAKKYGVPVIAIAGSLGDG 328 (375)
T ss_pred cHHHHHHHhhC------------HHHHhcCCCEEEECCCcccc--cccCCchHHHHHHHHHHhCCeEEEEecccCCC
Confidence 57777655542 33456789999999766633 33333466788899999999999999976443
No 111
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=52.58 E-value=1e+02 Score=33.10 Aligned_cols=95 Identities=17% Similarity=0.046 Sum_probs=53.0
Q ss_pred ccCCCEEEEeCChHHHHHHHHHH-HHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcc
Q 006256 452 IRDGDVLLTYGSSSAVEMILQHA-HELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (653)
Q Consensus 452 I~dGdvILT~g~Ss~Ve~vL~~A-~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGA 530 (653)
+...++++|.|.+..+..++... ...| -.|++ + .|.+.+...+.+ ..|+++..+.+ ... +.. -..
T Consensus 84 ~~~~~I~it~G~~~~i~~~~~~l~~~~g--d~Vl~-~-~p~y~~~~~~~~--~~g~~~~~~~~--~~~-l~~-----~~~ 149 (364)
T PRK07865 84 LDPAAVLPVIGSKELVAWLPTLLGLGPG--DVVVI-P-ELAYPTYEVGAR--LAGATVVRADS--LTE-LGP-----QRP 149 (364)
T ss_pred CCcccEEEccChHHHHHHHHHHHcCCCC--CEEEE-C-CCCcccHHHHHH--hcCCEEEecCC--hhh-CCc-----ccc
Confidence 44568999999999885543333 2333 24444 4 377666554433 35877776643 111 110 122
Q ss_pred eeEecCCCeecccchH-------HHHHHHhhCCCCeee
Q 006256 531 SSVLSNGTVCSRVGTA-------CVAMVAYGFHIPVLV 561 (653)
Q Consensus 531 daIlaNG~V~NKiGT~-------~lAl~Ak~~~VPVyV 561 (653)
..|+-+ ..-|..|+. .++-+|++|++.+++
T Consensus 150 ~~v~~~-~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~ 186 (364)
T PRK07865 150 ALIWLN-SPSNPTGRVLGVDHLRKVVAWARERGAVVAS 186 (364)
T ss_pred eEEEEc-CCCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 333334 355777743 566678899986553
No 112
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=52.37 E-value=3e+02 Score=32.60 Aligned_cols=83 Identities=17% Similarity=0.147 Sum_probs=53.2
Q ss_pred HHHHHHhccCCCEEEEeCChH--HHHHHHHHHH-H--------------------cCC-eeEEEEeCCCCCchHHHHHHH
Q 006256 445 VKHAVTKIRDGDVLLTYGSSS--AVEMILQHAH-E--------------------LGK-QFRVVIVDSRPKHEGKLLLRR 500 (653)
Q Consensus 445 a~~a~~~I~dGdvILT~g~Ss--~Ve~vL~~A~-e--------------------~gk-~f~ViV~ESRP~~EG~~La~e 500 (653)
.+.++++|.+-..|..||.+. .+...+..-. . .++ ..-+++..++-..+-.++++.
T Consensus 458 l~~aa~~L~~a~rI~i~G~G~S~~~A~~~~~~l~~lg~~~~~~~d~~~~~~~~~~l~~~DvvI~iS~sG~t~e~i~~~~~ 537 (638)
T PRK14101 458 VEQAIDILNNARRIEFYGLGNSNIVAQDAHYKFFRFGIPTIAYGDLYMQAASAALLGKGDVIVAVSKSGRAPELLRVLDV 537 (638)
T ss_pred HHHHHHHHhcCCEEEEEEccHHHHHHHHHHHHHhcCCceEEEcCCHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHH
Confidence 445667787778888887643 2222121111 1 122 233344455555677788899
Q ss_pred HHhCCCCEEEEccchHHHHhhhccEEEE
Q 006256 501 LVRKGLSCTYTHINAISYIIHEVTRVFL 528 (653)
Q Consensus 501 L~~~GI~vT~I~DsAv~~iM~~Vd~Vll 528 (653)
+.+.|+++..|+++ -+.+.+.+|.+|.
T Consensus 538 Ak~~Ga~vIaIT~~-~spLa~~aD~~L~ 564 (638)
T PRK14101 538 AMQAGAKVIAITSS-NTPLAKRATVALE 564 (638)
T ss_pred HHHCCCeEEEEcCC-CChhHhhCCEEEE
Confidence 99999999999996 5777778998873
No 113
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=52.31 E-value=17 Score=40.38 Aligned_cols=64 Identities=14% Similarity=0.229 Sum_probs=45.1
Q ss_pred chHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeeccccccc
Q 006256 492 HEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFH 569 (653)
Q Consensus 492 ~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~aetyKf~ 569 (653)
..|..+.-++.+ +-..++++|+||.|=-++-+. ++..|+ ..-+|-+||.|+|||+++|.+.+-+
T Consensus 266 ~~Gi~iV~~~~~------------le~~v~daDLVITGEGr~D~Q-s~~GK~-pigVA~~Akk~~vPvIaiaGs~~~~ 329 (378)
T COG1929 266 KSGIEIVLEATN------------LEDAVKDADLVITGEGRIDSQ-SLHGKT-PIGVAKLAKKYGVPVIAIAGSLGED 329 (378)
T ss_pred cccHHHHHHHhC------------HHHhhccCCEEEeCCCccccc-ccCCcc-chHHHHhhhhhCCCEEEEecccccC
Confidence 456677655543 345678999999997776543 344333 4567889999999999999975443
No 114
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=51.94 E-value=70 Score=29.03 Aligned_cols=88 Identities=16% Similarity=0.257 Sum_probs=53.2
Q ss_pred EEEEeCCh--HHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc---------chHHHHhh--hc
Q 006256 457 VLLTYGSS--SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---------NAISYIIH--EV 523 (653)
Q Consensus 457 vILT~g~S--s~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D---------sAv~~iM~--~V 523 (653)
++++++.. .-+..+++..++ ..|++|.+++ .++.|.+.||+|+.+.. ..+--+++ ++
T Consensus 3 vlisv~~~dk~~~~~~a~~l~~--~G~~i~aT~g--------Ta~~L~~~gi~~~~v~~~~~~~~~~~~~i~~~i~~~~i 72 (116)
T cd01423 3 ILISIGSYSKPELLPTAQKLSK--LGYKLYATEG--------TADFLLENGIPVTPVAWPSEEPQNDKPSLRELLAEGKI 72 (116)
T ss_pred EEEecCcccchhHHHHHHHHHH--CCCEEEEccH--------HHHHHHHcCCCceEeeeccCCCCCCchhHHHHHHcCCc
Confidence 34555543 233345555554 4588887553 56788899999988732 22333333 79
Q ss_pred cEEEE----cceeEecCCCeecccchHHHHHHHhhCCCCeeee
Q 006256 524 TRVFL----GASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (653)
Q Consensus 524 d~Vll----GAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~ 562 (653)
|.||- |.+....+| |.+=-.|-.++||++-.
T Consensus 73 dlVIn~~~~~~~~~~~~~--------~~iRr~Av~~~ip~iT~ 107 (116)
T cd01423 73 DLVINLPSNRGKRVLDND--------YVMRRAADDFAVPLITN 107 (116)
T ss_pred eEEEECCCCCCCccccCc--------EeeehhhHhhCCccccc
Confidence 99986 444334444 44555788999999743
No 115
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=51.90 E-value=14 Score=40.74 Aligned_cols=49 Identities=29% Similarity=0.380 Sum_probs=31.3
Q ss_pred CChHHHHHHHHHHHHcCCeeEEEEeCCCCCc-hHHH--HHHHHHhCCCCEEEEc
Q 006256 462 GSSSAVEMILQHAHELGKQFRVVIVDSRPKH-EGKL--LLRRLVRKGLSCTYTH 512 (653)
Q Consensus 462 g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~-EG~~--La~eL~~~GI~vT~I~ 512 (653)
++|..| ..|..|.++||+.+|+| |=+-.+ |-.. .+++|.++|+.|.|-.
T Consensus 48 ~~S~iv-~aLi~AA~nGK~Vtv~v-ELkARFDEe~Ni~Wa~~Le~aGv~ViyG~ 99 (352)
T PF13090_consen 48 SNSPIV-NALIEAAENGKQVTVLV-ELKARFDEENNIHWAKRLEEAGVHVIYGV 99 (352)
T ss_dssp TT-HHH-HHHHHHHHTT-EEEEEE-STTSSSTTCCCCCCCHHHHHCT-EEEE--
T ss_pred CCCHHH-HHHHHHHHcCCEEEEEE-EEeccccHHHHhHHHhhHHhcCeEEEcCC
Confidence 567777 55777888999988876 444444 3333 4689999999998853
No 116
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=51.85 E-value=68 Score=28.37 Aligned_cols=60 Identities=18% Similarity=0.094 Sum_probs=39.3
Q ss_pred HHHHHHhCCCCEEEE------ccch--HHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeec
Q 006256 497 LLRRLVRKGLSCTYT------HINA--ISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (653)
Q Consensus 497 La~eL~~~GI~vT~I------~DsA--v~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~a 563 (653)
+...|.+.|...... .... +...++++|+||+=.|.|-- .-+..+--.||.+++||+.+=
T Consensus 15 ~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH-------~~~~~vk~~akk~~ip~~~~~ 82 (97)
T PF10087_consen 15 YKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSH-------NAMWKVKKAAKKYGIPIIYSR 82 (97)
T ss_pred HHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcCh-------HHHHHHHHHHHHcCCcEEEEC
Confidence 345556667666666 3333 44455567999887665543 345566678999999999763
No 117
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=51.63 E-value=1.3e+02 Score=32.76 Aligned_cols=101 Identities=21% Similarity=0.248 Sum_probs=53.8
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccch---------HHHHhh---
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA---------ISYIIH--- 521 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsA---------v~~iM~--- 521 (653)
+.++++|-|.+.++..++....+.| -.|++. .|.+.+...+ +...|+.+.++.... +...+.
T Consensus 91 ~~~i~it~G~~~al~~~~~~~~~~g--d~vl~~--~p~y~~~~~~--~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 164 (391)
T PRK07309 91 ENEILVTIGATEALSASLTAILEPG--DKVLLP--APAYPGYEPI--VNLVGAEIVEIDTTENDFVLTPEMLEKAILEQG 164 (391)
T ss_pred CCcEEEeCChHHHHHHHHHHhcCCC--CEEEEe--CCCCcchHHH--HHHcCCEEEEEecCCcCCcCCHHHHHHHhhccC
Confidence 3568888888888866666554333 345554 3766665433 334688877774321 111221
Q ss_pred -hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 522 -~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
++..|++- .---..|.+++..--..++-+|+.|++++++
T Consensus 165 ~~~~~i~l~-~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~ 204 (391)
T PRK07309 165 DKLKAVILN-YPANPTGVTYSREQIKALADVLKKYDIFVIS 204 (391)
T ss_pred CCeEEEEEE-CCCCCCCcCcCHHHHHHHHHHHHHcCcEEEE
Confidence 23344431 0000114444433345567788899987775
No 118
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=51.58 E-value=1.2e+02 Score=34.30 Aligned_cols=99 Identities=19% Similarity=0.236 Sum_probs=52.2
Q ss_pred EEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHH-HH-HHHHhCCCCEEEEcc-chHHHHhh---hccEEEEcc
Q 006256 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKL-LL-RRLVRKGLSCTYTHI-NAISYIIH---EVTRVFLGA 530 (653)
Q Consensus 457 vILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~-La-~eL~~~GI~vT~I~D-sAv~~iM~---~Vd~VllGA 530 (653)
.|++-+-+.++..+|....+.|. +|++..+ .+.|.. +. +.|.+.|+.++++.| .....+.+ .=+++|+ .
T Consensus 87 av~~sSG~aAi~~al~all~~Gd--~Vv~~~~--~y~~t~~~~~~~l~~~Gi~v~~vdd~~d~e~l~~ai~~~tklV~-i 161 (436)
T PRK07812 87 ALLLASGQAAETFAILNLAGAGD--HIVSSPR--LYGGTYNLFHYTLPKLGIEVSFVEDPDDLDAWRAAVRPNTKAFF-A 161 (436)
T ss_pred EEEEccHHHHHHHHHHHHhCCCC--EEEEeCC--cchHHHHHHHHHhhcCeEEEEEECCCCCHHHHHHhCCCCCeEEE-E
Confidence 45555445566666665554443 5666654 344433 33 456778999888852 22322332 2233333 2
Q ss_pred eeEe-cCCCeecccchHHHHHHHhhCCCCeeeec
Q 006256 531 SSVL-SNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (653)
Q Consensus 531 daIl-aNG~V~NKiGT~~lAl~Ak~~~VPVyV~a 563 (653)
+.+. ..|.+.. + -.++-+||.||++|+|=+
T Consensus 162 e~~sNp~G~v~D-l--~~I~~la~~~gi~liVD~ 192 (436)
T PRK07812 162 ETISNPQIDVLD-I--PGVAEVAHEAGVPLIVDN 192 (436)
T ss_pred ECCCCCCCeecC-H--HHHHHHHHHcCCEEEEEC
Confidence 2222 1232222 1 358889999999887743
No 119
>PRK05968 hypothetical protein; Provisional
Probab=51.44 E-value=1.6e+02 Score=32.53 Aligned_cols=100 Identities=19% Similarity=0.157 Sum_probs=52.0
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchH-HHHH-HHHHhCCCCEEEEccc---hHHHHhhhccEEEEcc
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEG-KLLL-RRLVRKGLSCTYTHIN---AISYIIHEVTRVFLGA 530 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG-~~La-~eL~~~GI~vT~I~Ds---Av~~iM~~Vd~VllGA 530 (653)
..|++-+.+.++..+|....+.|. +|++.+ +.+.+ ..+. ..+...|++++++... .+-..+++..+|++-
T Consensus 80 ~av~~~sG~~Ai~~al~al~~~Gd--~Vl~~~--~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~tklV~ie- 154 (389)
T PRK05968 80 DARGFASGMAAISSTVLSFVEPGD--RIVAVR--HVYPDAFRLFETILKRMGVEVDYVDGRDEEAVAKALPGAKLLYLE- 154 (389)
T ss_pred cEEEECCHHHHHHHHHHHHhCCCC--EEEEeC--CCchHHHHHHHHHHHHcCceEEEeCCCCHHHHHHhcccCCEEEEE-
Confidence 455554444455445544444443 555544 44443 3333 4567789999887432 233334455555552
Q ss_pred eeEecCCCeecccchHHHHHHHhhCCCCeeeec
Q 006256 531 SSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (653)
Q Consensus 531 daIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~a 563 (653)
. ..|-+....=-..++-+||.|+++|+|=+
T Consensus 155 -~--pt~~~~~~~dl~~i~~la~~~gi~vivD~ 184 (389)
T PRK05968 155 -S--PTSWVFELQDVAALAALAKRHGVVTMIDN 184 (389)
T ss_pred -C--CCCCCCcHHHHHHHHHHHHHcCCEEEEEC
Confidence 1 22222222222346778899999877633
No 120
>PRK13938 phosphoheptose isomerase; Provisional
Probab=51.35 E-value=2.8e+02 Score=28.11 Aligned_cols=37 Identities=3% Similarity=-0.175 Sum_probs=27.7
Q ss_pred chHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEE
Q 006256 492 HEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFL 528 (653)
Q Consensus 492 ~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~Vll 528 (653)
.+=.++++.+.+.|+++..|+.+.-+.+.+.+|.+|.
T Consensus 127 ~~vi~a~~~Ak~~G~~vI~iT~~~~s~La~~aD~~l~ 163 (196)
T PRK13938 127 MSVLRAAKTARELGVTVVAMTGESGGQLAEFADFLIN 163 (196)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCChhhhhCCEEEE
Confidence 3445666888889999999988777777777887764
No 121
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=51.25 E-value=42 Score=32.32 Aligned_cols=99 Identities=18% Similarity=0.158 Sum_probs=62.9
Q ss_pred ccCCCEEEEeCCh-HHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcc
Q 006256 452 IRDGDVLLTYGSS-SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (653)
Q Consensus 452 I~dGdvILT~g~S-s~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGA 530 (653)
+..|+.|..+||= ..+ .... .+..+|+|+|=.|.+.|.. +-.+ .+....++++++|.||+=.
T Consensus 8 ~~~~~~V~~VG~f~P~~----~~l~--~~~~~v~v~d~~~~~~~~~----------~~~~-~~~~~~~~l~~aD~viiTG 70 (147)
T PF04016_consen 8 IGPGDKVGMVGYFQPLV----EKLK--ERGAEVRVFDLNPDNIGEE----------PGDV-PDEDAEEILPWADVVIITG 70 (147)
T ss_dssp TTTTSEEEEES--HCCH----HHHC--CCCSEEEEEESSGGG--SS----------CT-E-EGGGHHHHGGG-SEEEEEC
T ss_pred hcCCCEEEEEcCcHHHH----HHHh--cCCCCEEEEECCCCCCCCC----------CCcC-CHHHHHHHHccCCEEEEEe
Confidence 5678999999973 333 3332 4677999999988764432 1111 7888999999999999866
Q ss_pred eeEecCCCeecccchHHHHHHHhhCCCCeeeeccccccccccccC
Q 006256 531 SSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLD 575 (653)
Q Consensus 531 daIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~~~d 575 (653)
.++. || |+.-=+.....+.++++..+|.-+++...++
T Consensus 71 sTlv-N~-------Ti~~iL~~~~~~~~vil~GpS~~~~P~~l~~ 107 (147)
T PF04016_consen 71 STLV-NG-------TIDDILELARNAREVILYGPSAPLHPEALFD 107 (147)
T ss_dssp HHCC-TT-------THHHHHHHTTTSSEEEEESCCGGS-GGGGCC
T ss_pred eeee-cC-------CHHHHHHhCccCCeEEEEecCchhhHHHHHh
Confidence 5554 44 3332222222589999999999888865544
No 122
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=51.23 E-value=1.4e+02 Score=33.99 Aligned_cols=100 Identities=17% Similarity=0.218 Sum_probs=57.2
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHH-HHHHhCCCCEEEEcc----chHHHHhhhccEEEEc
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHI----NAISYIIHEVTRVFLG 529 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La-~eL~~~GI~vT~I~D----sAv~~iM~~Vd~VllG 529 (653)
..|+|-+-..++..+|..+.+.| -+|++ +.+.+.|- .+. ..|...|+.++++.. ..+...+..=+++|+
T Consensus 78 ~av~~~SG~aAi~~al~all~~G--D~VI~--~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~~~l~~~I~~~Tk~I~- 152 (432)
T PRK06702 78 GAVATASGQAAIMLAVLNICSSG--DHLLC--SSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTADEIVALANDKTKLVY- 152 (432)
T ss_pred cEEEECCHHHHHHHHHHHhcCCC--CEEEE--CCCchHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHhCCcCCeEEE-
Confidence 35555455556766666554444 36666 44556543 333 447889999999853 244445544345555
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCCeeee
Q 006256 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (653)
Q Consensus 530 AdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~ 562 (653)
.+.. .|= ...-+---.++-+||.||++++|=
T Consensus 153 ~e~p-gnP-~~~v~Di~~I~~iA~~~gi~livD 183 (432)
T PRK06702 153 AESL-GNP-AMNVLNFKEFSDAAKELEVPFIVD 183 (432)
T ss_pred EEcC-CCc-cccccCHHHHHHHHHHcCCEEEEE
Confidence 3432 221 111113567888999999988763
No 123
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=51.07 E-value=1e+02 Score=33.76 Aligned_cols=97 Identities=11% Similarity=0.125 Sum_probs=63.0
Q ss_pred CCCEEEEeCCh----HHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc-cc--hHHHHhh--hcc
Q 006256 454 DGDVLLTYGSS----SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-IN--AISYIIH--EVT 524 (653)
Q Consensus 454 dGdvILT~g~S----s~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~-Ds--Av~~iM~--~Vd 524 (653)
.|..|-.|+-| .++..+++...+++..++|+|+-+- ..|.+++..+...++.+.|.+ |. .+..+++ +-|
T Consensus 49 ~~~~iW~Ha~s~Ge~~~~~~l~~~l~~~~~~~~i~~t~~t--~~~~~~~~~~~~~~~~~~~~P~d~~~~~~~~l~~~~Pd 126 (425)
T PRK05749 49 KGPLIWFHAVSVGETRAAIPLIRALRKRYPDLPILVTTMT--PTGSERAQALFGDDVEHRYLPYDLPGAVRRFLRFWRPK 126 (425)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHHHHhCCCCcEEEeCCC--ccHHHHHHHhcCCCceEEEecCCcHHHHHHHHHhhCCC
Confidence 46789999987 4555667777777777888776553 446777766656678888876 43 4445555 457
Q ss_pred EEEEc-ceeEecCCCeecccchHHHHHHHhhCCCCeeeecc
Q 006256 525 RVFLG-ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCE 564 (653)
Q Consensus 525 ~VllG-AdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~ae 564 (653)
.|++. .| +..| +...|+..++|++++..
T Consensus 127 ~v~~~~~~-~~~~-----------~l~~~~~~~ip~vl~~~ 155 (425)
T PRK05749 127 LVIIMETE-LWPN-----------LIAELKRRGIPLVLANA 155 (425)
T ss_pred EEEEEecc-hhHH-----------HHHHHHHCCCCEEEEec
Confidence 77542 11 1111 33457889999998643
No 124
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=51.00 E-value=2.3e+02 Score=30.80 Aligned_cols=101 Identities=14% Similarity=0.204 Sum_probs=51.4
Q ss_pred CCEEEEeCChHHHHHHHHHHHH--cCCeeEEEEeCCCCCchHHHHH--HHHHhCCCCEEEEccc--------hHHHHhh-
Q 006256 455 GDVLLTYGSSSAVEMILQHAHE--LGKQFRVVIVDSRPKHEGKLLL--RRLVRKGLSCTYTHIN--------AISYIIH- 521 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~e--~gk~f~ViV~ESRP~~EG~~La--~eL~~~GI~vT~I~Ds--------Av~~iM~- 521 (653)
.++++|.|.+..+..++..... .+..-+|++.+ |.+.+.... ..+...|+.+.++... .+...+.
T Consensus 79 ~~i~~t~g~t~~l~~~~~~~~~~~~~~gd~Vl~~~--~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~i~~ 156 (398)
T TIGR03392 79 ENIVWTRGTTESINLVAQSYARPRLQPGDEIIVSE--AEHHANLIPWLMVAQQTGAKVVKLPIGADLLPDIRQLPELLTP 156 (398)
T ss_pred CeEEEeCChHHHHHHHHHHhhhccCCCCCEEEECC--cchhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHHhcc
Confidence 3577787777777555544321 12223566643 444343222 2345678888887421 2222222
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 522 ~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
+...|++ .+.=...|.+.. -..++-+|+.||+.++|
T Consensus 157 ~t~lv~i-~~~~n~tG~~~~---~~~i~~~~~~~~~~~iv 192 (398)
T TIGR03392 157 RTRILAL-GQMSNVTGGCPD---LARAITLAHQYGAVVVV 192 (398)
T ss_pred CceEEEE-ECccccccccCC---HHHHHHHHHHcCCEEEE
Confidence 3344433 222223344422 23467788999987775
No 125
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=50.97 E-value=2.3e+02 Score=30.21 Aligned_cols=102 Identities=16% Similarity=0.225 Sum_probs=54.1
Q ss_pred CEEEEeCChHHHHHHHHHHHHc-CCeeEEEEeCCCCCchHHHH-HHHHH-hCCCCEEEEccc-----hHHHH---hh-hc
Q 006256 456 DVLLTYGSSSAVEMILQHAHEL-GKQFRVVIVDSRPKHEGKLL-LRRLV-RKGLSCTYTHIN-----AISYI---IH-EV 523 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~-gk~f~ViV~ESRP~~EG~~L-a~eL~-~~GI~vT~I~Ds-----Av~~i---M~-~V 523 (653)
.+++|-|.+.++..++..+... ++.-+|++.+ +.+-+... .+.+. ..|+.+.+|... ..-.+ +. ++
T Consensus 63 ~v~~~~g~t~a~~~~~~~l~~~~~~g~~vl~~~--~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~ 140 (373)
T cd06453 63 EIIFTRNTTEAINLVAYGLGRANKPGDEIVTSV--MEHHSNIVPWQQLAERTGAKLKVVPVDDDGQLDLEALEKLLTERT 140 (373)
T ss_pred eEEEeCCHHHHHHHHHHHhhhcCCCCCEEEECc--chhHHHHHHHHHHHhhcCcEEEEeecCCCCCcCHHHHHHHhcCCc
Confidence 4667777776776666655441 1334566644 33334222 23343 678888887432 11222 22 34
Q ss_pred cEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeec
Q 006256 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (653)
Q Consensus 524 d~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~a 563 (653)
++|++. +.-...|.+.. + -.++-+|+.|+++++|=+
T Consensus 141 ~~v~~~-~~~~~tG~~~~-~--~~i~~~~~~~~~~li~D~ 176 (373)
T cd06453 141 KLVAVT-HVSNVLGTINP-V--KEIGEIAHEAGVPVLVDG 176 (373)
T ss_pred eEEEEe-CcccccCCcCC-H--HHHHHHHHHcCCEEEEEh
Confidence 455442 22223454433 2 367788999998888743
No 126
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=50.63 E-value=57 Score=31.58 Aligned_cols=42 Identities=12% Similarity=0.229 Sum_probs=19.9
Q ss_pred EEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHH
Q 006256 458 LLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLR 499 (653)
Q Consensus 458 ILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~ 499 (653)
|-||-....+..+|....++...+.|||++..---.-.++++
T Consensus 3 Ip~~Ne~~~l~~~l~sl~~~~~~~eIivvdd~S~D~t~~~~~ 44 (191)
T cd06436 3 VPCLNEEAVIQRTLASLLRNKPNFLVLVIDDASDDDTAGIVR 44 (191)
T ss_pred EeccccHHHHHHHHHHHHhCCCCeEEEEEECCCCcCHHHHHh
Confidence 444444555555555554444445565555443333333333
No 127
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=50.58 E-value=2.5e+02 Score=30.56 Aligned_cols=102 Identities=14% Similarity=0.174 Sum_probs=51.0
Q ss_pred CCEEEEeCChHHHHHHHHHHHH--cCCeeEEEEeCCCCCchHHHHH--HHHHhCCCCEEEEccc--------hHHHHhh-
Q 006256 455 GDVLLTYGSSSAVEMILQHAHE--LGKQFRVVIVDSRPKHEGKLLL--RRLVRKGLSCTYTHIN--------AISYIIH- 521 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~e--~gk~f~ViV~ESRP~~EG~~La--~eL~~~GI~vT~I~Ds--------Av~~iM~- 521 (653)
.++++|-|.+..+..++..... ..+.-+|++.+ |.+.+.... ......|++++++... .+...+.
T Consensus 82 ~~i~~~~~~t~~i~~~~~~~~~~~~~~gd~vl~~~--~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~ 159 (401)
T PRK10874 82 KNIVWTRGTTESINLVAQSYARPRLQPGDEIIVSE--AEHHANLVPWLMVAQQTGAKVVKLPLGADRLPDVDLLPELITP 159 (401)
T ss_pred CEEEEECCHHHHHHHHHHHhhhccCCCcCEEEECC--cchHHHHHHHHHHHHHhCCEEEEEecCCCCcCCHHHHHHhcCc
Confidence 3566676666666555544321 12234677754 344443222 2335679988887421 1222221
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeee
Q 006256 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (653)
Q Consensus 522 ~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~ 562 (653)
+..+|++ ++.-...|.+.. ...|+-+|+.+|++|+|=
T Consensus 160 ~t~lv~i-~~~~n~tG~~~~---~~~i~~l~~~~g~~~ivD 196 (401)
T PRK10874 160 RTRILAL-GQMSNVTGGCPD---LARAITLAHQAGMVVMVD 196 (401)
T ss_pred CcEEEEE-eCCcccccCcCC---HHHHHHHHHHcCCEEEEE
Confidence 2333333 322223343321 235777899999887763
No 128
>PRK14012 cysteine desulfurase; Provisional
Probab=50.48 E-value=3.5e+02 Score=29.55 Aligned_cols=101 Identities=17% Similarity=0.222 Sum_probs=49.5
Q ss_pred CEEEEeCChHHHHHHHHHHHH--cCCeeEEEEeCCCCCchHHHH-HHHHHhCCCCEEEEccc--------hHHHHhhhcc
Q 006256 456 DVLLTYGSSSAVEMILQHAHE--LGKQFRVVIVDSRPKHEGKLL-LRRLVRKGLSCTYTHIN--------AISYIIHEVT 524 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e--~gk~f~ViV~ESRP~~EG~~L-a~eL~~~GI~vT~I~Ds--------Av~~iM~~Vd 524 (653)
.+++|-|.+.++..+|..+.+ .+..-+|++.+ +.+..... .+.|...|+.+.++... .+-..+..=+
T Consensus 68 ~v~~~~g~t~al~~~l~~l~~~~~~~gd~Vi~~~--~~~~s~~~~~~~~~~~g~~~~~v~~~~~g~~d~~~l~~~i~~~t 145 (404)
T PRK14012 68 EIVFTSGATESDNLAIKGAAHFYQKKGKHIITSK--TEHKAVLDTCRQLEREGFEVTYLDPQSNGIIDLEKLEAAMRDDT 145 (404)
T ss_pred eEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEEec--CccHHHHHHHHHHHhCCCEEEEEccCCCCcCCHHHHHHhcCCCC
Confidence 466666555566544443321 12333566643 33333333 35566679988887421 1222222223
Q ss_pred EEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 525 ~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
++++-.+.-...|.+.. + -.|+-+|+.|++.|+|
T Consensus 146 ~lv~~~~~~n~tG~~~~-~--~~I~~la~~~g~~viv 179 (404)
T PRK14012 146 ILVSIMHVNNEIGVIQD-I--AAIGEICRERGIIFHV 179 (404)
T ss_pred EEEEEECcCCCccchhh-H--HHHHHHHHHcCCEEEE
Confidence 33332222122343332 2 4577789999988876
No 129
>PRK10342 glycerate kinase I; Provisional
Probab=50.46 E-value=19 Score=40.17 Aligned_cols=63 Identities=22% Similarity=0.212 Sum_probs=45.3
Q ss_pred hHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeeccccccc
Q 006256 493 EGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFH 569 (653)
Q Consensus 493 EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~aetyKf~ 569 (653)
.|.++.-+|.. +-..|+.+|+||.|==++-. ....--....||-.|+.|+||||++|.+...+
T Consensus 267 ~G~d~v~~~~~------------l~~~l~~ADLVITGEG~~D~--QTl~GK~p~gVa~~A~~~~vPviai~G~~~~~ 329 (381)
T PRK10342 267 SGIEIVTTALN------------LEEHIHDCTLVITGEGRIDS--QSIHGKVPIGVANVAKKYHKPVIGIAGSLTDD 329 (381)
T ss_pred CHHHHHHHhcC------------HHHHhccCCEEEECCCcCcc--cccCCccHHHHHHHHHHhCCCEEEEecccCCC
Confidence 57777766543 34457789999999766532 33444456778889999999999999976444
No 130
>PRK06234 methionine gamma-lyase; Provisional
Probab=50.25 E-value=1.6e+02 Score=32.69 Aligned_cols=98 Identities=19% Similarity=0.227 Sum_probs=50.5
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHH-HHHHhCCCCEEEEccch---HHHHhh-hccEEEEc
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHINA---ISYIIH-EVTRVFLG 529 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La-~eL~~~GI~vT~I~DsA---v~~iM~-~Vd~VllG 529 (653)
+.|+|-+-+.++..+|....+.|. +|++.+ |.+.+. .+. ..+...|++++++.... +-..+. +..+|++-
T Consensus 81 ~~l~~~sG~~Ai~~al~~ll~~Gd--~Vl~~~--~~y~~~~~~~~~~~~~~G~~v~~vd~~d~e~l~~~i~~~tklI~ie 156 (400)
T PRK06234 81 AAVVAASGMGAISSSLWSALKAGD--HVVASD--TLYGCTFALLNHGLTRYGVEVTFVDTSNLEEVRNALKANTKVVYLE 156 (400)
T ss_pred cEEEEcCHHHHHHHHHHHHhCCCC--EEEEec--CccchHHHHHHHHHhhCCeEEEEECCCCHHHHHHHhccCCeEEEEE
Confidence 455555555566555555444444 566544 555443 333 45677899999886432 222332 33344432
Q ss_pred ceeEecCCCeecccchHHHHHHHhhC--CCCeee
Q 006256 530 ASSVLSNGTVCSRVGTACVAMVAYGF--HIPVLV 561 (653)
Q Consensus 530 AdaIlaNG~V~NKiGT~~lAl~Ak~~--~VPVyV 561 (653)
.---..|.+.. --.++-+|+.| ++.|+|
T Consensus 157 -sP~NPtG~v~d---l~~I~~la~~~~~~i~liv 186 (400)
T PRK06234 157 -TPANPTLKVTD---IKAISNIAHENNKECLVFV 186 (400)
T ss_pred -CCCCCCCCcCC---HHHHHHHHHhcCCCCEEEE
Confidence 11112343332 33677788887 665554
No 131
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=50.00 E-value=91 Score=31.38 Aligned_cols=75 Identities=27% Similarity=0.376 Sum_probs=44.9
Q ss_pred EEEEeCChHHHHHHHHHHHHcCCeeEEEE-eCCCCCchHHHHHHHHHhCCCCEEEEcc----------chHHHHhh--hc
Q 006256 457 VLLTYGSSSAVEMILQHAHELGKQFRVVI-VDSRPKHEGKLLLRRLVRKGLSCTYTHI----------NAISYIIH--EV 523 (653)
Q Consensus 457 vILT~g~Ss~Ve~vL~~A~e~gk~f~ViV-~ESRP~~EG~~La~eL~~~GI~vT~I~D----------sAv~~iM~--~V 523 (653)
.||.-|+++..+.+|....+.+....|.+ +-.+|..++. ....+.||++..+.. ..+...++ ++
T Consensus 4 ail~sg~gs~~~~ll~~~~~~~l~~~I~~vi~~~~~~~~~---~~A~~~gip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (190)
T TIGR00639 4 VVLISGNGSNLQAIIDACKEGKIPASVVLVISNKPDAYGL---ERAAQAGIPTFVLSLKDFPSREAFDQAIIEELRAHEV 80 (190)
T ss_pred EEEEcCCChhHHHHHHHHHcCCCCceEEEEEECCccchHH---HHHHHcCCCEEEECccccCchhhhhHHHHHHHHhcCC
Confidence 47777889988777766655444455443 3455655443 445677999987552 23344444 57
Q ss_pred cEEEE-cceeEe
Q 006256 524 TRVFL-GASSVL 534 (653)
Q Consensus 524 d~Vll-GAdaIl 534 (653)
|.+++ |-..|+
T Consensus 81 D~iv~~~~~~il 92 (190)
T TIGR00639 81 DLVVLAGFMRIL 92 (190)
T ss_pred CEEEEeCcchhC
Confidence 87766 433443
No 132
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=49.92 E-value=1.6e+02 Score=31.70 Aligned_cols=102 Identities=15% Similarity=0.171 Sum_probs=59.5
Q ss_pred CCEEEEeCChHHHHHHHHHHHH-cCCeeEEEEeCCCCCchHHHHH-HHHH-hCCCCEEEEcc--------chHHHHh-hh
Q 006256 455 GDVLLTYGSSSAVEMILQHAHE-LGKQFRVVIVDSRPKHEGKLLL-RRLV-RKGLSCTYTHI--------NAISYII-HE 522 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~e-~gk~f~ViV~ESRP~~EG~~La-~eL~-~~GI~vT~I~D--------sAv~~iM-~~ 522 (653)
.++++|.+.+..++.++..... ..+.-+|+++... +.+.... .++. ..|+++++|.. ..+...+ ++
T Consensus 62 ~~v~~~~~~t~a~~~~~~~l~~~~~~g~~vl~~~~~--~~s~~~~~~~~~~~~g~~v~~i~~~~~~~~~~~~~~~~l~~~ 139 (371)
T PF00266_consen 62 EEVVFTSNGTEALNAVASSLLNPLKPGDEVLVTSNE--HPSNRYPWEEIAKRKGAEVRVIPADPGGSLDLEDLEEALNPD 139 (371)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHGTTTCEEEEEESS--HHHHHHHHHHHHHHTTEEEEEEEEGTTSSCSHHHHHHHHHTT
T ss_pred cccccccccchhhhhhhhcccccccccccccccccc--ccccccccccccccchhhhccccccccchhhhhhhhhhhccc
Confidence 5677787777777766666621 2333366665543 3344433 4454 78999998864 2233333 35
Q ss_pred ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeee
Q 006256 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (653)
Q Consensus 523 Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~ 562 (653)
.++|++-+ .-..+|. .+. --.++-+||++++.++|=
T Consensus 140 ~~lv~~~~-~~~~tG~-~~p--i~~I~~~~~~~~~~~~vD 175 (371)
T PF00266_consen 140 TRLVSISH-VENSTGV-RNP--IEEIAKLAHEYGALLVVD 175 (371)
T ss_dssp ESEEEEES-BETTTTB-BSS--HHHHHHHHHHTTSEEEEE
T ss_pred cceEEeec-ccccccE-Eee--eceehhhhhccCCceeEe
Confidence 66665543 2234554 333 446778889999888873
No 133
>PRK07503 methionine gamma-lyase; Provisional
Probab=49.69 E-value=1.8e+02 Score=32.36 Aligned_cols=97 Identities=19% Similarity=0.196 Sum_probs=51.9
Q ss_pred EEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHH-HHHHhCCCCEEEEccc---hHHHHhh-hccEEEEcc
Q 006256 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLGA 530 (653)
Q Consensus 457 vILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La-~eL~~~GI~vT~I~Ds---Av~~iM~-~Vd~VllGA 530 (653)
.|++-+.+.++..+|......|. +|++. .|.+.+. .+. ..+...|+.++++... .+...+. +..+|++ .
T Consensus 83 ~i~~~sG~~Al~~~l~~ll~~Gd--~Viv~--~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~~tklV~l-e 157 (403)
T PRK07503 83 AVALASGMGAITATLWTLLRPGD--EVIVD--QTLYGCTFAFLHHGLGEFGVTVRHVDLTDPAALKAAISDKTRMVYF-E 157 (403)
T ss_pred EEEEcCHHHHHHHHHHHHcCCCC--EEEEc--cCccchHHHHHHHHHhhCCEEEEEeCCCCHHHHHHhcCccCcEEEE-e
Confidence 45555445566555554443343 56653 3555332 223 4566789998887532 2333332 4445544 2
Q ss_pred eeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 531 SSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 531 daIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
.-.-..|.+.. --.|+-+|+.|+++++|
T Consensus 158 ~p~NPtG~~~d---i~~I~~la~~~gi~lIv 185 (403)
T PRK07503 158 TPANPNMRLVD---IAAVAEIAHGAGAKVVV 185 (403)
T ss_pred CCCCCCCeeeC---HHHHHHHHHHcCCEEEE
Confidence 22223344433 25677788999998776
No 134
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=49.38 E-value=1.3e+02 Score=33.20 Aligned_cols=98 Identities=17% Similarity=0.098 Sum_probs=50.3
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchH-HHHHHHHH-hCCCCEEEEcc---chHHHHh-hhccEEEEc
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEG-KLLLRRLV-RKGLSCTYTHI---NAISYII-HEVTRVFLG 529 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG-~~La~eL~-~~GI~vT~I~D---sAv~~iM-~~Vd~VllG 529 (653)
++|+|.|-..++..+|....+.| -+|++.+ |.+.| ..+...+. ..|+.++++.. ..+...+ ++..+|++-
T Consensus 69 ~~i~~~sg~~Ai~~~l~~l~~~G--D~Vl~~~--~~y~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~l~~~tklV~l~ 144 (386)
T PRK08045 69 GAVLTNTGMSAIHLVTTVFLKPG--DLLVAPH--DCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVE 144 (386)
T ss_pred eEEEECCHHHHHHHHHHHHcCCC--CEEEEcC--CCcHHHHHHHHHHHhhCCeEEEEeCCCCHHHHHHhcccCCeEEEEE
Confidence 45666666666666555444333 3555543 66665 44554443 45678877632 1222223 244555552
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 530 AdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
.---..|.++. -..++-+|+.++++++|
T Consensus 145 -sP~NPtG~v~d---i~~I~~ia~~~g~~viv 172 (386)
T PRK08045 145 -SPSNPLLRVVD---IAKICHLAREAGAVSVV 172 (386)
T ss_pred -CCCCCCCEecC---HHHHHHHHHHcCCEEEE
Confidence 11112233332 23577788889876654
No 135
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=49.24 E-value=1.1e+02 Score=33.06 Aligned_cols=98 Identities=13% Similarity=0.074 Sum_probs=59.7
Q ss_pred HHHHhcc--CCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhcc
Q 006256 447 HAVTKIR--DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVT 524 (653)
Q Consensus 447 ~a~~~I~--dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd 524 (653)
.+++++. +-.+|..+|.+..-+.-++........-+|+|. +|-...-.+|+.++.+.|++++...+. .-++.++|
T Consensus 118 laa~~La~~~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~-~r~~~~~~~~~~~~~~~g~~v~~~~~~--~eav~~aD 194 (325)
T TIGR02371 118 VAAKYLARKDSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVY-CRTPSTREKFALRASDYEVPVRAATDP--REAVEGCD 194 (325)
T ss_pred HHHHHhCCCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEE-CCCHHHHHHHHHHHHhhCCcEEEeCCH--HHHhccCC
Confidence 3444443 457888999886544333332222223345554 444444556777787788887776543 34557999
Q ss_pred EEEEcc---ee-----EecCCCeecccchHH
Q 006256 525 RVFLGA---SS-----VLSNGTVCSRVGTAC 547 (653)
Q Consensus 525 ~VllGA---da-----IlaNG~V~NKiGT~~ 547 (653)
.|+.-. +- .+..|..+|-+|++.
T Consensus 195 iVitaT~s~~P~~~~~~l~~g~~v~~vGs~~ 225 (325)
T TIGR02371 195 ILVTTTPSRKPVVKADWVSEGTHINAIGADA 225 (325)
T ss_pred EEEEecCCCCcEecHHHcCCCCEEEecCCCC
Confidence 998754 22 356788899999753
No 136
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=49.12 E-value=2e+02 Score=31.85 Aligned_cols=97 Identities=13% Similarity=0.126 Sum_probs=50.2
Q ss_pred EEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHH-HHHHhCCCCEEEEccchHHHHhh----hccEEEEcc
Q 006256 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHINAISYIIH----EVTRVFLGA 530 (653)
Q Consensus 457 vILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La-~eL~~~GI~vT~I~DsAv~~iM~----~Vd~VllGA 530 (653)
.|+|-+.+.++..+|......|. +|++. .|.+.+. .+. ..+...|+.+.++.......+.. +..+|++-
T Consensus 77 av~~~sG~~Ai~~~l~al~~~Gd--~Vi~~--~~~y~~t~~~~~~~~~~~G~~~~~vd~~d~e~l~~~i~~~tklV~le- 151 (391)
T TIGR01328 77 AVATSSGMGAIAATLLTILKAGD--HLISD--ECLYGCTFALLEHALTKFGIQVDFINMAIPEEVKAHIKDNTKIVYFE- 151 (391)
T ss_pred EEEECCHHHHHHHHHHHHhCCCC--EEEEe--cCcchHHHHHHHHHHhcCCeEEEEECCCCHHHHHHhhccCCeEEEEE-
Confidence 45544444565555544443343 45553 3555443 333 44667899988886543333333 33333321
Q ss_pred eeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 531 SSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 531 daIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
.-.-..|.++. --.++-+||++|++++|
T Consensus 152 ~p~Np~G~v~d---l~~I~~la~~~gi~liv 179 (391)
T TIGR01328 152 TPANPTMKLID---MERVCRDAHSQGVKVIV 179 (391)
T ss_pred CCCCCCCcccC---HHHHHHHHHHcCCEEEE
Confidence 11112343332 23467778999998876
No 137
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=49.09 E-value=60 Score=35.35 Aligned_cols=68 Identities=15% Similarity=0.228 Sum_probs=46.5
Q ss_pred HHHHHHhCCCCEEEEccch--------HHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhh----CCCCeeeecc
Q 006256 497 LLRRLVRKGLSCTYTHINA--------ISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG----FHIPVLVCCE 564 (653)
Q Consensus 497 La~eL~~~GI~vT~I~DsA--------v~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~----~~VPVyV~ae 564 (653)
.+..|.+.||+|++|.... +-...++...|+ ++.++....-.|+...+.++.+ ...||.-++-
T Consensus 219 Aa~~L~~~Gi~~~VId~~~ikPlD~~~i~~~~~~t~~vv-----~vEE~~~~gGlG~~va~~l~e~~f~~~~~pv~rl~~ 293 (327)
T CHL00144 219 AVKVLVEKGYDPEIIDLISLKPLDLGTISKSVKKTHKVL-----IVEECMKTGGIGAELIAQINEHLFDELDAPIVRLSS 293 (327)
T ss_pred HHHHHHhcCCCEEEEecCcCCCCCHHHHHHHHHhhCcEE-----EEECCCCCCCHHHHHHHHHHHhchhhcCCCeEEEcc
Confidence 3456677777777764333 334445566665 4678888888999999999887 4678887765
Q ss_pred ccccc
Q 006256 565 AYKFH 569 (653)
Q Consensus 565 tyKf~ 569 (653)
...|.
T Consensus 294 ~d~~~ 298 (327)
T CHL00144 294 QDVPT 298 (327)
T ss_pred CCCcC
Confidence 44443
No 138
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=49.07 E-value=4.3e+02 Score=29.72 Aligned_cols=94 Identities=17% Similarity=0.154 Sum_probs=52.5
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHh--CCCCEEEEccchHHHH---hh--hccEE
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR--KGLSCTYTHINAISYI---IH--EVTRV 526 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~--~GI~vT~I~DsAv~~i---M~--~Vd~V 526 (653)
.|.++..++.+..+..+-+.+.+.|-...++++......--.++...|.+ .+..+.++.+.-..-+ +. +.|++
T Consensus 302 ~gkrv~i~g~~~~~~~la~~L~elGm~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~d~~e~~~~i~~~~pDli 381 (435)
T cd01974 302 HGKKFALYGDPDFLIGLTSFLLELGMEPVHVLTGNGGKRFEKEMQALLDASPYGAGAKVYPGKDLWHLRSLLFTEPVDLL 381 (435)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCCEEEEEEeCCCCHHHHHHHHHHHhhcCCCCCcEEEECCCHHHHHHHHhhcCCCEE
Confidence 57888888887665565555667787775556544333222333334444 2334444333333322 33 23443
Q ss_pred EEcceeEecCCCeecccchHHHHHHHhhCCCCeeeec
Q 006256 527 FLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (653)
Q Consensus 527 llGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~a 563 (653)
+|+..-..+|+..+||++.++
T Consensus 382 ----------------iG~s~~~~~a~~~gip~v~~~ 402 (435)
T cd01974 382 ----------------IGNTYGKYIARDTDIPLVRFG 402 (435)
T ss_pred ----------------EECccHHHHHHHhCCCEEEee
Confidence 233344678999999998776
No 139
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=49.02 E-value=2.5e+02 Score=30.06 Aligned_cols=100 Identities=13% Similarity=0.066 Sum_probs=51.1
Q ss_pred CEEEEeCC-hHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccch-----HHHH---hhhcc--
Q 006256 456 DVLLTYGS-SSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA-----ISYI---IHEVT-- 524 (653)
Q Consensus 456 dvILT~g~-Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsA-----v~~i---M~~Vd-- 524 (653)
++|+..++ +..+..++......|. +|+|.+ +..-|..+...+...|+++.+|.... +..+ +.+-+
T Consensus 57 ~~i~~~~~gt~~l~~~~~~l~~~~~--~vlv~~--~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~l~~~~~~ 132 (368)
T PRK13479 57 TCVPLQGSGTFSVEAAIGSLVPRDG--KVLVPD--NGAYGARIAQIAEYLGIAHVVLDTGEDEPPDAAEVEAALAADPRI 132 (368)
T ss_pred eEEEEcCCcHHHHHHHHHhccCCCC--eEEEEe--CCchHHHHHHHHHHcCCcEEEEECCCCCCCCHHHHHHHHHhCCCC
Confidence 44544444 5567666666543332 555554 33445555555667899988885321 2222 22111
Q ss_pred EEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeee
Q 006256 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (653)
Q Consensus 525 ~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~ 562 (653)
+++.-++.=...|.+.. ...++-+|+.++++++|=
T Consensus 133 ~~v~~~~~~~~tG~~~~---~~~i~~l~~~~~~~livD 167 (368)
T PRK13479 133 THVALVHCETTTGILNP---LDEIAAVAKRHGKRLIVD 167 (368)
T ss_pred cEEEEEcccCccccccC---HHHHHHHHHHcCCEEEEE
Confidence 12221211122343332 357888899998866653
No 140
>PRK07683 aminotransferase A; Validated
Probab=49.01 E-value=1.4e+02 Score=32.48 Aligned_cols=93 Identities=23% Similarity=0.290 Sum_probs=51.9
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccch---------HHHHhhhccEE
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA---------ISYIIHEVTRV 526 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsA---------v~~iM~~Vd~V 526 (653)
++++|.|.+.++..++....+.|. +|++ ..|.+.+...+. ...|+++.++.... +...+..-+++
T Consensus 91 ~I~~t~G~~~al~~~~~~l~~~gd--~Vl~--~~p~y~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 164 (387)
T PRK07683 91 EIIVTIGASEAIDIAFRTILEPGT--EVIL--PAPIYPGYEPII--RLCGAKPVFIDTRSTGFRLTAEALENAITEKTRC 164 (387)
T ss_pred cEEEeCChHHHHHHHHHHhCCCCC--EEEE--cCCCccchHHHH--HHcCCEEEEeecCcccCCCCHHHHHHhcCcCceE
Confidence 789999988888666655544443 4554 356666654443 34688888875322 11222111222
Q ss_pred EEcceeEecCCCeecccch-------HHHHHHHhhCCCCeee
Q 006256 527 FLGASSVLSNGTVCSRVGT-------ACVAMVAYGFHIPVLV 561 (653)
Q Consensus 527 llGAdaIlaNG~V~NKiGT-------~~lAl~Ak~~~VPVyV 561 (653)
++ +. ..-|..|+ ..++-+|+.+++.+++
T Consensus 165 i~-----i~--~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~ 199 (387)
T PRK07683 165 VV-----LP--YPSNPTGVTLSKEELQDIADVLKDKNIFVLS 199 (387)
T ss_pred EE-----Ee--CCCCCCCcCCCHHHHHHHHHHHHHcCeEEEE
Confidence 21 11 23456666 4567788888876553
No 141
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=48.92 E-value=50 Score=38.92 Aligned_cols=111 Identities=15% Similarity=0.174 Sum_probs=59.6
Q ss_pred cCCCEEEEeCChHHHH-HHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHh-----CC----CCEEEE-cc----chHH
Q 006256 453 RDGDVLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-----KG----LSCTYT-HI----NAIS 517 (653)
Q Consensus 453 ~dGdvILT~g~Ss~Ve-~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~-----~G----I~vT~I-~D----sAv~ 517 (653)
.+|.+||+.|-+.-+. .+++.+.++| ++|+++. |-......+..+|.+ .| ..++++ .| ..+.
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G--~~Vval~-Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~ 154 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLG--FRVRAGV-RSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIG 154 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC--CeEEEEe-CCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHH
Confidence 4788999998765553 3344555555 4666553 332333344444433 12 123332 22 2344
Q ss_pred HHhhhccEEEEcceeEecC-----C-CeecccchHHHHHHHhhCCCCeeeecccc
Q 006256 518 YIIHEVTRVFLGASSVLSN-----G-TVCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (653)
Q Consensus 518 ~iM~~Vd~VllGAdaIlaN-----G-~V~NKiGT~~lAl~Ak~~~VPVyV~aety 566 (653)
..+..+|.||.-|-....+ + .-+|..|+..+.-+|+.+++.-||+.-+.
T Consensus 155 ~aLggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSSi 209 (576)
T PLN03209 155 PALGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTSL 209 (576)
T ss_pred HHhcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEccc
Confidence 4566788777644221100 0 11356788888888888888766665553
No 142
>PRK08114 cystathionine beta-lyase; Provisional
Probab=48.73 E-value=89 Score=35.01 Aligned_cols=100 Identities=15% Similarity=0.196 Sum_probs=54.7
Q ss_pred ccCCCEEEEeCChH-HHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH-HHHHhCCCCEEEEcc---chHHHHhhhccEE
Q 006256 452 IRDGDVLLTYGSSS-AVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RRLVRKGLSCTYTHI---NAISYIIHEVTRV 526 (653)
Q Consensus 452 I~dGdvILT~g~Ss-~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La-~eL~~~GI~vT~I~D---sAv~~iM~~Vd~V 526 (653)
+..|.--+.++++. ++..++...++.|. +|++. ...+..-.++. +.|.+.||+|+++.. ..+...+..-+++
T Consensus 74 LEg~~~a~~~~SGmaAi~~~~~~ll~~GD--~Vv~~-~~~Yg~t~~l~~~~l~~~Gi~v~~vd~~d~~~l~~~l~~~Trl 150 (395)
T PRK08114 74 LEGGAGCALYPCGAAAVANAILAFVEQGD--HVLMT-GTAYEPTQDFCSKILSKLGVTTTWFDPLIGADIAKLIQPNTKV 150 (395)
T ss_pred HhCCCeEEEEhHHHHHHHHHHHHHcCCCC--EEEEe-CCCcHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCCCceE
Confidence 45565444555454 56556665555454 45555 33444445555 557788999999852 2344444422333
Q ss_pred EEcceeEecCCCeecccch----HHHHHHHhhCC--CCeee
Q 006256 527 FLGASSVLSNGTVCSRVGT----ACVAMVAYGFH--IPVLV 561 (653)
Q Consensus 527 llGAdaIlaNG~V~NKiGT----~~lAl~Ak~~~--VPVyV 561 (653)
|. .+ .+.|..|. ..++-+||.++ ++++|
T Consensus 151 V~-~E------tpsNp~~~v~DI~~Ia~ia~~~g~g~~lvV 184 (395)
T PRK08114 151 VF-LE------SPGSITMEVHDVPAIVAAVRSVNPDAVIMI 184 (395)
T ss_pred EE-EE------CCCCCCCEeecHHHHHHHHHHhCCCCEEEE
Confidence 31 11 23444433 34677888875 76665
No 143
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=48.69 E-value=1.1e+02 Score=31.18 Aligned_cols=88 Identities=20% Similarity=0.254 Sum_probs=57.6
Q ss_pred hccCCCEEEEeCChH-HHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH-HHHHhCCCCEEEEccchHHHHhh---hccE
Q 006256 451 KIRDGDVLLTYGSSS-AVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RRLVRKGLSCTYTHINAISYIIH---EVTR 525 (653)
Q Consensus 451 ~I~dGdvILT~g~Ss-~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La-~eL~~~GI~vT~I~DsAv~~iM~---~Vd~ 525 (653)
-+++|+.++.+|.++ .| .+.-| ..+.+-+||-+|..+ +..+++ +.+.+.|++-..+.-..+.-+++ +.|.
T Consensus 31 ~~~~g~~l~DIGaGtGsi--~iE~a-~~~p~~~v~AIe~~~--~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~da 105 (187)
T COG2242 31 RPRPGDRLWDIGAGTGSI--TIEWA-LAGPSGRVIAIERDE--EALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDA 105 (187)
T ss_pred CCCCCCEEEEeCCCccHH--HHHHH-HhCCCceEEEEecCH--HHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCE
Confidence 356899999999876 33 12333 457888999999864 456676 77889998765555555555555 4677
Q ss_pred EEEcceeEecCCCeecccchHHHHHH
Q 006256 526 VFLGASSVLSNGTVCSRVGTACVAMV 551 (653)
Q Consensus 526 VllGAdaIlaNG~V~NKiGT~~lAl~ 551 (653)
+|+| |+ -+--+-...++.
T Consensus 106 iFIG-------Gg-~~i~~ile~~~~ 123 (187)
T COG2242 106 IFIG-------GG-GNIEEILEAAWE 123 (187)
T ss_pred EEEC-------CC-CCHHHHHHHHHH
Confidence 7776 55 444444444443
No 144
>PRK09028 cystathionine beta-lyase; Provisional
Probab=48.47 E-value=1.5e+02 Score=33.08 Aligned_cols=94 Identities=21% Similarity=0.221 Sum_probs=54.7
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHH-HHHHhCCCCEEEEcc---chHHHHhh-hccEEEEc
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHI---NAISYIIH-EVTRVFLG 529 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La-~eL~~~GI~vT~I~D---sAv~~iM~-~Vd~VllG 529 (653)
++++|-|-..++..++....+.|. +|++.+ |.+.|. .++ ..|...|+.++++.. ..+...+. +..+|++-
T Consensus 78 ~~~~~~sG~~Ai~~~l~all~~GD--~Vvv~~--~~Y~~t~~l~~~~l~~~Gi~v~~v~~~~~e~l~~~l~~~TklV~le 153 (394)
T PRK09028 78 GTALYPSGAAAISNALLSFLKAGD--HLLMVD--SCYEPTRDLCDKILKGFGIETTYYDPMIGEGIRELIRPNTKVLFLE 153 (394)
T ss_pred cEEEECCHHHHHHHHHHHHhCCCC--EEEEEC--CCcHHHHHHHHHhhhhcceEEEEECCCCHHHHHHhcCcCceEEEEE
Confidence 556666655677666665555453 566664 445443 455 456778999988742 23444443 34444442
Q ss_pred ceeEecCCCeecccch----HHHHHHHhhCCCCeee
Q 006256 530 ASSVLSNGTVCSRVGT----ACVAMVAYGFHIPVLV 561 (653)
Q Consensus 530 AdaIlaNG~V~NKiGT----~~lAl~Ak~~~VPVyV 561 (653)
..-|..|. ..|+-+||+|++.++|
T Consensus 154 --------spsNPtg~v~dl~~I~~la~~~g~~lvv 181 (394)
T PRK09028 154 --------SPGSITMEVQDVPTLSRIAHEHDIVVML 181 (394)
T ss_pred --------CCCCCCCcHHHHHHHHHHHHHcCCEEEE
Confidence 23445553 4567778999987664
No 145
>PLN02828 formyltetrahydrofolate deformylase
Probab=48.47 E-value=69 Score=34.21 Aligned_cols=73 Identities=16% Similarity=0.232 Sum_probs=43.9
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCC-eeEEEEeCC-CCCchHHHHHHHHHhCCCCEEEEccc-------hHHHHhhhccEE
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGK-QFRVVIVDS-RPKHEGKLLLRRLVRKGLSCTYTHIN-------AISYIIHEVTRV 526 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk-~f~ViV~ES-RP~~EG~~La~eL~~~GI~vT~I~Ds-------Av~~iM~~Vd~V 526 (653)
-.||.-|+++.++.+|.. ++.|. ...|.++=| +|...+..+.....+.|||+.+++.. .+...+.++|.|
T Consensus 73 iavlvSg~g~nl~~ll~~-~~~g~l~~eI~~ViSn~~~~~~a~~~~~A~~~gIP~~~~~~~~~~~~e~~~~~~l~~~Dli 151 (268)
T PLN02828 73 IAVLASKQDHCLIDLLHR-WQDGRLPVDITCVISNHERGPNTHVMRFLERHGIPYHYLPTTKENKREDEILELVKGTDFL 151 (268)
T ss_pred EEEEEcCCChhHHHHHHh-hhcCCCCceEEEEEeCCCCCCCchHHHHHHHcCCCEEEeCCCCCCCHHHHHHHHHhcCCEE
Confidence 357788899999776654 55554 344444433 32222334445567789999987531 344455577877
Q ss_pred EEc
Q 006256 527 FLG 529 (653)
Q Consensus 527 llG 529 (653)
++-
T Consensus 152 VLA 154 (268)
T PLN02828 152 VLA 154 (268)
T ss_pred EEe
Confidence 764
No 146
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=48.33 E-value=76 Score=31.63 Aligned_cols=98 Identities=12% Similarity=0.107 Sum_probs=52.8
Q ss_pred EEEeCChHHHH-HHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc---chHHHHhhhccEEEEcceeE
Q 006256 458 LLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---NAISYIIHEVTRVFLGASSV 533 (653)
Q Consensus 458 ILT~g~Ss~Ve-~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D---sAv~~iM~~Vd~VllGAdaI 533 (653)
|+.+|-+-.+. .++..+...+...++++ -.+ -...+..|...|+.+..... .++...++.+|.||+--...
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~--R~~---~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~ 75 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALV--RDP---SSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPS 75 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEE--SSS---HHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCS
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEE--ecc---chhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcc
Confidence 56777533222 22333333344444443 222 44567889999987654332 45666677777776432211
Q ss_pred ecCCCeecccchHHHHHHHhhCCCCeeeecc
Q 006256 534 LSNGTVCSRVGTACVAMVAYGFHIPVLVCCE 564 (653)
Q Consensus 534 laNG~V~NKiGT~~lAl~Ak~~~VPVyV~ae 564 (653)
. -.-.-....++-+|++.||..||...
T Consensus 76 ~----~~~~~~~~~li~Aa~~agVk~~v~ss 102 (233)
T PF05368_consen 76 H----PSELEQQKNLIDAAKAAGVKHFVPSS 102 (233)
T ss_dssp C----CCHHHHHHHHHHHHHHHT-SEEEESE
T ss_pred h----hhhhhhhhhHHHhhhccccceEEEEE
Confidence 1 11122345577788899999998655
No 147
>TIGR03458 YgfH_subfam succinate CoA transferases. A closely related clade not included in this family are the Ach1p proteins of fungi which are acetyl-CoA hydrolases. This name has been applied to many of the proteins detected by this model, possibly erroneously.
Probab=48.24 E-value=1.8e+02 Score=33.75 Aligned_cols=117 Identities=15% Similarity=0.210 Sum_probs=66.6
Q ss_pred HHHHHhccCCCEEEEeCC--hH----HHHHHHHHHHH---cC--CeeEEEEeCC-CC------CchH----------HHH
Q 006256 446 KHAVTKIRDGDVLLTYGS--SS----AVEMILQHAHE---LG--KQFRVVIVDS-RP------KHEG----------KLL 497 (653)
Q Consensus 446 ~~a~~~I~dGdvILT~g~--Ss----~Ve~vL~~A~e---~g--k~f~ViV~ES-RP------~~EG----------~~L 497 (653)
+.|+.+|++||+|..-++ .. ++..+.+++.+ .| ++++++..-+ .+ ...| ...
T Consensus 6 eEAv~lIkDGdtI~iGgftg~~~P~aLl~ALa~r~~~~~~~g~p~~vtll~~~~~g~~~~~~l~~~g~v~~~is~~~sp~ 85 (485)
T TIGR03458 6 DEAAALIKDGMTVGMSGFTPAGYPKAVPAALAKRAKAAHAAGEPFKITLLTGASTGPELDGVLAEADAIARRLPYQSDPT 85 (485)
T ss_pred HHHHHhCCCCCEEEECCCCCCCCHHHHHHHHHHHHHhhhccCCCccEEEEEecccCCcccccccccCCEEEEecccCCHH
Confidence 467779999999988765 21 23333333322 12 2455554221 11 1111 122
Q ss_pred HHHHHhCC-CCEEEEccchHHHHhh-----hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeec
Q 006256 498 LRRLVRKG-LSCTYTHINAISYIIH-----EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (653)
Q Consensus 498 a~eL~~~G-I~vT~I~DsAv~~iM~-----~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~a 563 (653)
.+++.+.| +.++-+.-+.+...+. ++|.+|+=+...-.+|.+.=-..+.....+++.-+ .|+|-+
T Consensus 86 ~Rkai~~G~i~y~P~~ls~ip~~lrag~~g~~DValI~VSp~D~~Gn~slg~s~~~~~~aa~aAk-~VIvEV 156 (485)
T TIGR03458 86 LRKKINAGEVMYVDMHLSHVAQQLRYGFLGKVDVAVIEAAAITEDGRIIPTSSVGNNPTFLELAD-KVIVEV 156 (485)
T ss_pred HHHHHHcCCCEEEeccHHHHHHHHHhcCCCCCCEEEEEEEeCCCCceEEEecccchHHHHHHhCC-EEEEEE
Confidence 46666666 3444455667777774 58999999999999998865555444444444443 344433
No 148
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=48.23 E-value=3.2e+02 Score=29.09 Aligned_cols=99 Identities=16% Similarity=0.189 Sum_probs=48.5
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHH-HHHH-HhCCCCEEEEccch-----HHHHhhhc---cE
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-LRRL-VRKGLSCTYTHINA-----ISYIIHEV---TR 525 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~L-a~eL-~~~GI~vT~I~DsA-----v~~iM~~V---d~ 525 (653)
.+++|.|.+.++..++....+ ..-+|++.+ +.+.+..- ...+ ...|+++.++.... ...+...+ .+
T Consensus 64 ~v~~~~g~t~al~~~~~~~~~--~gd~vl~~~--~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~ 139 (376)
T TIGR01977 64 HVVFTNNATTALNIALKGLLK--EGDHVITTP--MEHNSVARPLECLKEQIGVEITIVKCDNEGLISPERIKRAIKTNTK 139 (376)
T ss_pred eEEEeCCHHHHHHHHHHhccC--CCCEEEECc--chhhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHhcCCCCe
Confidence 566777777777665554333 234666644 23322211 2233 33488887774221 12222222 12
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 526 VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
+++-.+.-...|.+.. --.++-+|++++++|+|
T Consensus 140 ~v~~~~~~n~tG~~~~---~~~i~~l~~~~~~~liv 172 (376)
T TIGR01977 140 LIVVSHASNVTGTILP---IEEIGELAQENGIFFIL 172 (376)
T ss_pred EEEEECCCCCccccCC---HHHHHHHHHHcCCEEEE
Confidence 3322222223444443 13477788999987765
No 149
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=47.83 E-value=4.5e+02 Score=29.56 Aligned_cols=96 Identities=19% Similarity=0.133 Sum_probs=56.6
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc---chHHHHhhhccEEEEcc
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---NAISYIIHEVTRVFLGA 530 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D---sAv~~iM~~Vd~VllGA 530 (653)
.|..++.++....+..+.+.+.+.|-...++++++.+..--..+...+.+.+.++.++.+ ..+..++++. ++
T Consensus 299 ~gkrv~v~g~~~~~~~l~~~L~elG~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~d~~e~~~~l~~~-----~~ 373 (429)
T cd03466 299 FGRKAAIYGEPDFVVAITRFVLENGMVPVLIATGSESKKLKEKLEEDLKEYVEKCVILDGADFFDIESYAKEL-----KI 373 (429)
T ss_pred CCCEEEEEcCHHHHHHHHHHHHHCCCEEEEEEeCCCChHHHHHHHHHHHhcCCceEEEeCCCHHHHHHHHHhc-----CC
Confidence 577888988876665655556677776655666655443233333445555666666554 2344444432 23
Q ss_pred eeEecCCCeecccchHHHHHHHhhCCCCeeeec
Q 006256 531 SSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (653)
Q Consensus 531 daIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~a 563 (653)
|-++.| ..-..+|+..+||++.++
T Consensus 374 dliiG~---------s~~~~~a~~~~ip~~~~~ 397 (429)
T cd03466 374 DVLIGN---------SYGRRIAEKLGIPLIRIG 397 (429)
T ss_pred CEEEEC---------chhHHHHHHcCCCEEEec
Confidence 333332 223478999999998765
No 150
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=47.81 E-value=78 Score=32.06 Aligned_cols=76 Identities=22% Similarity=0.309 Sum_probs=45.0
Q ss_pred EEEEeCChHHHHHHHHHHHHcCCeeEEEE-eCCCCCchHHHHHHHHHhCCCCEEEEcc----------chHHHHhh--hc
Q 006256 457 VLLTYGSSSAVEMILQHAHELGKQFRVVI-VDSRPKHEGKLLLRRLVRKGLSCTYTHI----------NAISYIIH--EV 523 (653)
Q Consensus 457 vILT~g~Ss~Ve~vL~~A~e~gk~f~ViV-~ESRP~~EG~~La~eL~~~GI~vT~I~D----------sAv~~iM~--~V 523 (653)
.||.-|+++.+..++....+.+....|.+ +-.++...+ .....+.||||..+.. ..+...++ ++
T Consensus 5 ~vl~sg~gs~~~~ll~~~~~~~~~~~I~~vvs~~~~~~~---~~~a~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (200)
T PRK05647 5 VVLASGNGSNLQAIIDACAAGQLPAEIVAVISDRPDAYG---LERAEAAGIPTFVLDHKDFPSREAFDAALVEALDAYQP 81 (200)
T ss_pred EEEEcCCChhHHHHHHHHHcCCCCcEEEEEEecCccchH---HHHHHHcCCCEEEECccccCchhHhHHHHHHHHHHhCc
Confidence 46777789988776666555444455443 333344433 3455778999988652 23334443 68
Q ss_pred cEEEE-cceeEec
Q 006256 524 TRVFL-GASSVLS 535 (653)
Q Consensus 524 d~Vll-GAdaIla 535 (653)
|.+|+ |-..|+.
T Consensus 82 D~iv~~~~~~ii~ 94 (200)
T PRK05647 82 DLVVLAGFMRILG 94 (200)
T ss_pred CEEEhHHhhhhCC
Confidence 88776 4445554
No 151
>PRK07568 aspartate aminotransferase; Provisional
Probab=47.77 E-value=1.5e+02 Score=32.08 Aligned_cols=95 Identities=16% Similarity=0.231 Sum_probs=51.2
Q ss_pred cCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc---c--------hHHHHhh
Q 006256 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---N--------AISYIIH 521 (653)
Q Consensus 453 ~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D---s--------Av~~iM~ 521 (653)
....+++|-|.+.++..++....+.| -+|++.+ |.+.+.. ..+...|+.+..+.. . .+...+.
T Consensus 87 ~~~~i~~t~G~~~al~~~~~~l~~~g--d~Vl~~~--p~y~~~~--~~~~~~g~~~~~v~~~~~~g~~~~~~~~l~~~~~ 160 (397)
T PRK07568 87 EPDEILITNGGSEAILFAMMAICDPG--DEILVPE--PFYANYN--GFATSAGVKIVPVTTKIEEGFHLPSKEEIEKLIT 160 (397)
T ss_pred CcceEEEcCChHHHHHHHHHHhcCCC--CEEEEec--CCCccHH--HHHHHcCCEEEEeecCcccCCCCCCHHHHHHhcC
Confidence 34467888888877765554443333 3566654 6654432 234567888777642 1 1111221
Q ss_pred -hccEEEEcceeEecCCCeecccch-------HHHHHHHhhCCCCeee
Q 006256 522 -EVTRVFLGASSVLSNGTVCSRVGT-------ACVAMVAYGFHIPVLV 561 (653)
Q Consensus 522 -~Vd~VllGAdaIlaNG~V~NKiGT-------~~lAl~Ak~~~VPVyV 561 (653)
++.+|++ .| .-|..|+ ..++-+|+++++.+++
T Consensus 161 ~~~~~v~i------~~--p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~ 200 (397)
T PRK07568 161 PKTKAILI------SN--PGNPTGVVYTKEELEMLAEIAKKHDLFLIS 200 (397)
T ss_pred ccceEEEE------EC--CCCCCCccCCHHHHHHHHHHHHHCCcEEEE
Confidence 2333322 22 2366665 4467778889976664
No 152
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=47.72 E-value=1e+02 Score=31.99 Aligned_cols=93 Identities=15% Similarity=0.118 Sum_probs=59.0
Q ss_pred EEEEeCCh-HHHHHHHHHHHHcCCeeEEEEeCCCCCch---HHHHHHHHHhCCCCEEEE-ccchHHHHhhhccEEEEcce
Q 006256 457 VLLTYGSS-SAVEMILQHAHELGKQFRVVIVDSRPKHE---GKLLLRRLVRKGLSCTYT-HINAISYIIHEVTRVFLGAS 531 (653)
Q Consensus 457 vILT~g~S-s~Ve~vL~~A~e~gk~f~ViV~ESRP~~E---G~~La~eL~~~GI~vT~I-~DsAv~~iM~~Vd~VllGAd 531 (653)
.|..++.+ .....+|..+.+.....+++| -.-|... ..++..++.. ...+.++ .+..+..+|..+|.|+.-
T Consensus 131 ~i~~~~~~~~~~~~~l~~~~~~~p~~~lvv-K~HP~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~Ll~~s~~Vvti-- 206 (269)
T PF05159_consen 131 QIRYHSPSQADFLDMLESFAKENPDAKLVV-KPHPDERGGNKYSYLEELPN-LPNVVIIDDDVNLYELLEQSDAVVTI-- 206 (269)
T ss_pred chhccCCcHhHHHHHHHHHHHHCCCCEEEE-EECchhhCCCChhHhhhhhc-CCCeEEECCCCCHHHHHHhCCEEEEE--
Confidence 34444442 345577887777666666654 4456422 2233444433 3444544 567889999999999643
Q ss_pred eEecCCCeecccchHHHHHHHhhCCCCeeeecccc
Q 006256 532 SVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (653)
Q Consensus 532 aIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~aety 566 (653)
|+ ++++=|-.+|+||+|++.++
T Consensus 207 ----nS---------tvGlEAll~gkpVi~~G~~~ 228 (269)
T PF05159_consen 207 ----NS---------TVGLEALLHGKPVIVFGRAF 228 (269)
T ss_pred ----CC---------HHHHHHHHcCCceEEecCcc
Confidence 32 47788889999999998765
No 153
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=47.23 E-value=1.8e+02 Score=31.75 Aligned_cols=15 Identities=47% Similarity=0.569 Sum_probs=11.5
Q ss_pred HHHHHHhhCCCCeee
Q 006256 547 CVAMVAYGFHIPVLV 561 (653)
Q Consensus 547 ~lAl~Ak~~~VPVyV 561 (653)
.++-+||+||++|+|
T Consensus 179 ~I~~la~~~g~~liv 193 (387)
T PRK09331 179 KVAKVAHEYGIPFLL 193 (387)
T ss_pred HHHHHHHHcCCEEEE
Confidence 477788888888775
No 154
>COG3109 ProQ Activator of osmoprotectant transporter ProP [Signal transduction mechanisms]
Probab=47.01 E-value=28 Score=35.05 Aligned_cols=25 Identities=40% Similarity=0.352 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCC
Q 006256 197 KAERRAIQEAQRAAKAAAKAEGIKT 221 (653)
Q Consensus 197 kAERRa~QEaqRAaKaa~k~~~~~~ 221 (653)
-+|+.|.|++||++|.++|.+...+
T Consensus 103 laeakarv~a~r~~q~a~k~e~a~a 127 (208)
T COG3109 103 LAEAKARVQAQRAEQQAKKREEAPA 127 (208)
T ss_pred HHHHHHHHHHHHHHHHHhccccccc
Confidence 4789999999999999999887774
No 155
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=46.71 E-value=1.6e+02 Score=31.62 Aligned_cols=94 Identities=17% Similarity=0.233 Sum_probs=50.8
Q ss_pred ccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc---------hH-HHHhh
Q 006256 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---------AI-SYIIH 521 (653)
Q Consensus 452 I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds---------Av-~~iM~ 521 (653)
+...++++|.|.+.++..+++ +...| .|++. .|.+..... .+...|+++..+... .+ ..+-+
T Consensus 70 ~~~~~i~it~Ga~~~l~~~~~-~l~~g---~viv~--~P~y~~~~~--~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~ 141 (356)
T PRK08056 70 VPASWILAGNGETESIFAVVS-GLKPR---RAMIV--TPGFAEYRR--ALQQVGCEIRRYSLREADGWQLTDAILEALTP 141 (356)
T ss_pred cChhhEEECCCHHHHHHHHHH-HhCCC---CEEEe--CCCcHHHHH--HHHHcCCeEEEEecccccCCCccHHHHHhccC
Confidence 334567888887777755555 44333 45444 266544332 345568887776421 11 11113
Q ss_pred hccEEEEcceeEecCCCeecccch-------HHHHHHHhhCCCCeee
Q 006256 522 EVTRVFLGASSVLSNGTVCSRVGT-------ACVAMVAYGFHIPVLV 561 (653)
Q Consensus 522 ~Vd~VllGAdaIlaNG~V~NKiGT-------~~lAl~Ak~~~VPVyV 561 (653)
++.+|++. ..-|..|. ..++-+|+.|++.+++
T Consensus 142 ~~k~v~l~--------~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~ 180 (356)
T PRK08056 142 DLDCLFLC--------TPNNPTGLLPERQLLQAIAERCKSLNIALIL 180 (356)
T ss_pred CCCEEEEe--------CCcCCCCCCCCHHHHHHHHHHHHhcCCEEEE
Confidence 44555441 34566664 3456678888876654
No 156
>PLN02206 UDP-glucuronate decarboxylase
Probab=46.49 E-value=76 Score=35.85 Aligned_cols=109 Identities=16% Similarity=0.124 Sum_probs=58.7
Q ss_pred CCCEEEEeCChHHHHHHH-HHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEccee
Q 006256 454 DGDVLLTYGSSSAVEMIL-QHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASS 532 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL-~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAda 532 (653)
.+..||..|-+--|..-| +.+.++| .+|++++.........+...+. ...++++.-......+.++|.||=-|..
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G--~~V~~ld~~~~~~~~~~~~~~~--~~~~~~i~~D~~~~~l~~~D~ViHlAa~ 193 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARG--DSVIVVDNFFTGRKENVMHHFS--NPNFELIRHDVVEPILLEVDQIYHLACP 193 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCc--CEEEEEeCCCccchhhhhhhcc--CCceEEEECCccChhhcCCCEEEEeeee
Confidence 457888888765544333 3344444 5677765432111112212222 2345555322222334578888776632
Q ss_pred EecCCC--------eecccchHHHHHHHhhCCCCeeeecccc
Q 006256 533 VLSNGT--------VCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (653)
Q Consensus 533 IlaNG~--------V~NKiGT~~lAl~Ak~~~VPVyV~aety 566 (653)
...... -.|-.||..+.-+|+.++++|+.+.-..
T Consensus 194 ~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~r~V~~SS~~ 235 (442)
T PLN02206 194 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSE 235 (442)
T ss_pred cchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECChH
Confidence 211111 1677899999999999999877665543
No 157
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=46.34 E-value=59 Score=34.98 Aligned_cols=96 Identities=19% Similarity=0.206 Sum_probs=59.8
Q ss_pred EEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhh--ccEEEEcceeEec
Q 006256 458 LLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHE--VTRVFLGASSVLS 535 (653)
Q Consensus 458 ILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~--Vd~VllGAdaIla 535 (653)
||..|.+--|..-|+++.. ..+.|+.+..+... +.....+..++.+ -|.||=-|--..-
T Consensus 3 iLi~G~~GqLG~~L~~~l~--~~~~v~a~~~~~~D-----------------itd~~~v~~~i~~~~PDvVIn~AAyt~v 63 (281)
T COG1091 3 ILITGANGQLGTELRRALP--GEFEVIATDRAELD-----------------ITDPDAVLEVIRETRPDVVINAAAYTAV 63 (281)
T ss_pred EEEEcCCChHHHHHHHHhC--CCceEEeccCcccc-----------------ccChHHHHHHHHhhCCCEEEECcccccc
Confidence 6777766666566666543 56788877665521 1111223333332 2444333322222
Q ss_pred CC--------CeecccchHHHHHHHhhCCCCeeeecccccccccc
Q 006256 536 NG--------TVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERV 572 (653)
Q Consensus 536 NG--------~V~NKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~ 572 (653)
|+ -.+|-.|+..+|.+|+++|.+++-+.-.|=|+-..
T Consensus 64 D~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lVhiSTDyVFDG~~ 108 (281)
T COG1091 64 DKAESEPELAFAVNATGAENLARAAAEVGARLVHISTDYVFDGEK 108 (281)
T ss_pred ccccCCHHHHHHhHHHHHHHHHHHHHHhCCeEEEeecceEecCCC
Confidence 22 24889999999999999999999999999998654
No 158
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=46.33 E-value=2.4e+02 Score=30.86 Aligned_cols=101 Identities=14% Similarity=0.204 Sum_probs=49.7
Q ss_pred CCEEEEeCChHHHHHHHHHHH--HcCCeeEEEEeCCCCCchHHHHH-HHH-HhCCCCEEEEccc--------hHHHHhh-
Q 006256 455 GDVLLTYGSSSAVEMILQHAH--ELGKQFRVVIVDSRPKHEGKLLL-RRL-VRKGLSCTYTHIN--------AISYIIH- 521 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~--e~gk~f~ViV~ESRP~~EG~~La-~eL-~~~GI~vT~I~Ds--------Av~~iM~- 521 (653)
.++++|.|.+..+..++.... ...+.-+|++.+. .+.+.... ..+ ...|+++.++... .+...+.
T Consensus 86 ~~v~~t~g~t~~l~~~~~~~~~~~~~~gd~vl~~~~--~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~ 163 (406)
T PRK09295 86 EELVFVRGTTEGINLVANSWGNSNVRAGDNIIISEM--EHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPALFDE 163 (406)
T ss_pred CeEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECcc--hhhHHHHHHHHHHHHcCcEEEEEecCCCCCCCHHHHHHhcCC
Confidence 467888776666654443320 1122335666542 22222222 233 4578888887521 2222232
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 522 ~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
+..+|++- +.=...|.+.. ...++-+||.+++.|+|
T Consensus 164 ~t~lv~l~-~~~n~tG~~~~---~~~i~~~~~~~~~~viv 199 (406)
T PRK09295 164 RTRLLAIT-HVSNVLGTENP---LAEMIALAHQHGAKVLV 199 (406)
T ss_pred CcEEEEEe-cchhcccccCC---HHHHHHHHHHcCCEEEE
Confidence 34444443 22233444433 23577788888886665
No 159
>PRK09411 carbamate kinase; Reviewed
Probab=46.27 E-value=53 Score=35.62 Aligned_cols=61 Identities=16% Similarity=0.182 Sum_probs=38.4
Q ss_pred HHHHHHhccCCCEEEEeCChHHHHHHHHHHHHcCC-----eeEEEEeCCCCCchHHHHHHHHHhCCCC
Q 006256 445 VKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGK-----QFRVVIVDSRPKHEGKLLLRRLVRKGLS 507 (653)
Q Consensus 445 a~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk-----~f~ViV~ESRP~~EG~~La~eL~~~GI~ 507 (653)
+++.++++.+..+|+||||+.-|..+++. .+..+ .+.|.+.+|- ..=|.-|..+|.+.|++
T Consensus 33 a~~ia~l~~~~~~vitHGNGPQVG~l~~~-~~~~~~~~~~pld~~~a~sq-G~iGy~l~q~l~~~~~~ 98 (297)
T PRK09411 33 VPALARLARSYRLAIVHGNGPQVGLLALQ-NLAWKEVEPYPLDVLVAESQ-GMIGYMLAQSLSAQPQM 98 (297)
T ss_pred HHHHHHHHHcCCEEEEeCCccHHHHHHHH-HHhhcCCCCCCchhhhhhcc-cHHHHHHHHHHHHcCCC
Confidence 34444566567899999999999654443 33222 2444444443 23367777899888875
No 160
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=46.09 E-value=1.3e+02 Score=34.70 Aligned_cols=112 Identities=20% Similarity=0.314 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHhcCCccccH-HHHHHHHHHHHHhc--------------------CCCccHHHHHHHHHHHHHHHH
Q 006256 375 RDLTAKISSYVSFLIDCRPLSVSM-GNAIRFLKSQIAKI--------------------PISLSESEAKATLHSDIERFI 433 (653)
Q Consensus 375 rdL~~~L~~~i~~L~~aRPtsVsm-gNAIr~lk~~I~~~--------------------~~~~~~~eaK~~L~e~I~~fi 433 (653)
.+|.+.|.-+-++...-.|+|+.+ |||..-+-..++.- +.+.+.+|+.+...++-+.|+
T Consensus 217 ~~ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~~~pD~vtDQTsaHdp~~GY~P~G~s~ee~~~lr~~d~~~~~ 296 (561)
T COG2987 217 ETLDEALALAEEATAAGEPISIGLLGNAAEILPELLRRGIRPDLVTDQTSAHDPLNGYLPVGYTVEEADELREEDPDKYR 296 (561)
T ss_pred CCHHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcCCCCceecccccccCcccCcCCCcCCHHHHHHHHhhCHHHHH
Confidence 345555665556667778999874 99987776665441 112367889888888888886
Q ss_pred HHHHHHHHHHHHHHHHHhc---cCCCEEEEeCCh-----------------HHHHHHHHHHHHcCC-eeEEEEeCCCC
Q 006256 434 NEKIILADRVIVKHAVTKI---RDGDVLLTYGSS-----------------SAVEMILQHAHELGK-QFRVVIVDSRP 490 (653)
Q Consensus 434 ~E~i~~a~~~Ia~~a~~~I---~dGdvILT~g~S-----------------s~Ve~vL~~A~e~gk-~f~ViV~ESRP 490 (653)
+. +.+.|..|....+ .+|-..+-||++ .-|...|+-++-.|+ .||=.++-.-|
T Consensus 297 ~~----a~~sm~~hv~Aml~~q~~G~~~fDYGNnirq~a~d~G~~~aF~fPgfVpayIrPLFc~G~GPFRW~aLSgdp 370 (561)
T COG2987 297 KL----ARASMARHVEAMLAFQDRGVPTFDYGNNIRQVAKDEGVENAFDFPGFVPAYIRPLFCEGIGPFRWVALSGDP 370 (561)
T ss_pred HH----HHHHHHHHHHHHHHHHHcCCeeeecchHHHHHHHhccccccccCCcchHHhhhhhhhcCcCCeeEEEecCCH
Confidence 43 6777777755433 467777777764 234445555555555 36666655555
No 161
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=46.04 E-value=3.4e+02 Score=28.42 Aligned_cols=101 Identities=16% Similarity=0.120 Sum_probs=52.8
Q ss_pred CCEEEEeCChHHHHHHHHHHHHc------------CCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc-c-------c
Q 006256 455 GDVLLTYGSSSAVEMILQHAHEL------------GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-I-------N 514 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~e~------------gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~-D-------s 514 (653)
...|.|.|.+.++...+..+... +....|++.+ +.+-....+ +...|+.+..+. | .
T Consensus 58 ~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~h~~~~~~--~~~~g~~~~~v~~~~~~~~d~~ 133 (345)
T cd06450 58 ADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSD--QAHVSVEKA--AAYLDVKVRLVPVDEDGRMDPE 133 (345)
T ss_pred CCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcC--cchhHHHHH--HHHHhcCeEEeeeCCCCCcCHH
Confidence 46888888877765555444321 1233444433 333332222 222377777764 2 1
Q ss_pred hHHHHhhh------ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeee
Q 006256 515 AISYIIHE------VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (653)
Q Consensus 515 Av~~iM~~------Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~ 562 (653)
.+-..+.+ -.++++....-...|.+.. -..++-+|+.|+++++|=
T Consensus 134 ~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~---~~~i~~~~~~~~~~l~vD 184 (345)
T cd06450 134 ALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDP---LEEIADLAEKYDLWLHVD 184 (345)
T ss_pred HHHHHHHHHHHCCCCcEEEEEecccCCCCCCCC---HHHHHHHHHHhCCeEEEe
Confidence 23333333 3344444444444555422 356788899999988873
No 162
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=46.02 E-value=4.4e+02 Score=28.86 Aligned_cols=107 Identities=16% Similarity=0.191 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc-hHHH
Q 006256 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-AISY 518 (653)
Q Consensus 440 a~~~Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds-Av~~ 518 (653)
+.+.+.+ ..+.+. |..|+.++.......+.+.+.+.|-...++++......+=.++-+.|.+....+..-.|. .+..
T Consensus 258 ~~~~l~~-~~~~l~-g~~v~i~~~~~~~~~l~~~L~elG~~v~~v~~~~~~~~~~e~~~~~~~~~~~~v~~~~~~~~~~~ 335 (398)
T PF00148_consen 258 AEDALAD-YRERLG-GKRVAIYGDPDRALGLARFLEELGMEVVAVGCDDKSPEDEERLRWLLEESDPEVIIDPDPEEIEE 335 (398)
T ss_dssp HHHHHHH-HHHHHT-T-EEEEESSHHHHHHHHHHHHHTT-EEEEEEESSGGHHHHHHHHHHHHTTCSEEEESCBHHHHHH
T ss_pred HHHHHHh-hHHhhc-CceEEEEcCchhHHHHHHHHHHcCCeEEEEEEccCchhHHHHHHHHhhCCCcEEEeCCCHHHHHH
Confidence 3344444 334443 788888988766556666666777776666666554332233334444442222222232 4444
Q ss_pred Hhhh--ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeecc
Q 006256 519 IIHE--VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCE 564 (653)
Q Consensus 519 iM~~--Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~ae 564 (653)
++.+ .|.+| |+..-..+|+..++|++.++-
T Consensus 336 ~l~~~~pdl~i----------------g~~~~~~~a~~~~~~~~~~~~ 367 (398)
T PF00148_consen 336 LLEELKPDLLI----------------GSSHERYLAKKLGIPLIRIGF 367 (398)
T ss_dssp HHHHHT-SEEE----------------ESHHHHHHHHHTT--EEE-SS
T ss_pred HHHhcCCCEEE----------------echhhHHHHHHhCCCeEEEeC
Confidence 5554 66553 334455678888888887653
No 163
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=45.93 E-value=75 Score=37.44 Aligned_cols=89 Identities=20% Similarity=0.194 Sum_probs=59.0
Q ss_pred CeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEE----cc-chHHHHhh--hccEEEEcceeEe-cCCC----------ee
Q 006256 479 KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT----HI-NAISYIIH--EVTRVFLGASSVL-SNGT----------VC 540 (653)
Q Consensus 479 k~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I----~D-sAv~~iM~--~Vd~VllGAdaIl-aNG~----------V~ 540 (653)
...+|+|+-.. .+=|+.|++.|.+.|+++++. +| ..+...+. +.|.||=-|--.. .+-+ -+
T Consensus 379 ~~mkiLVtGa~-G~iG~~l~~~L~~~g~~v~~~~~~l~d~~~v~~~i~~~~pd~Vih~Aa~~~~~~~~~~~~~~~~~~~~ 457 (668)
T PLN02260 379 PSLKFLIYGRT-GWIGGLLGKLCEKQGIAYEYGKGRLEDRSSLLADIRNVKPTHVFNAAGVTGRPNVDWCESHKVETIRA 457 (668)
T ss_pred CCceEEEECCC-chHHHHHHHHHHhCCCeEEeeccccccHHHHHHHHHhhCCCEEEECCcccCCCCCChHHhCHHHHHHH
Confidence 34566666543 556899999999999888543 22 23444554 5788876553221 0111 27
Q ss_pred cccchHHHHHHHhhCCCCeeeecccccc
Q 006256 541 SRVGTACVAMVAYGFHIPVLVCCEAYKF 568 (653)
Q Consensus 541 NKiGT~~lAl~Ak~~~VPVyV~aetyKf 568 (653)
|-.||..++-+|+.++++++++.-.+=|
T Consensus 458 N~~gt~~l~~a~~~~g~~~v~~Ss~~v~ 485 (668)
T PLN02260 458 NVVGTLTLADVCRENGLLMMNFATGCIF 485 (668)
T ss_pred HhHHHHHHHHHHHHcCCeEEEEccccee
Confidence 8899999999999999998877554444
No 164
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=45.73 E-value=3e+02 Score=28.47 Aligned_cols=45 Identities=18% Similarity=0.048 Sum_probs=34.0
Q ss_pred EEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEE
Q 006256 483 VVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFL 528 (653)
Q Consensus 483 ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~Vll 528 (653)
+++.-++-..+-.++++.+.+.|+++..|++ .-+.+.+.+|.+|.
T Consensus 180 I~iS~sG~t~~~~~~~~~ak~~g~~vI~IT~-~~s~l~~~ad~~l~ 224 (284)
T PRK11302 180 VLISHTGRTKSLVELAQLARENGATVIAITS-AGSPLAREATLALT 224 (284)
T ss_pred EEEeCCCCCHHHHHHHHHHHHcCCeEEEECC-CCChhHHhCCEEEe
Confidence 3344555555667778999999999999997 45667778899886
No 165
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=45.12 E-value=76 Score=35.05 Aligned_cols=85 Identities=20% Similarity=0.243 Sum_probs=52.0
Q ss_pred hccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc--------hHHHHhhh
Q 006256 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN--------AISYIIHE 522 (653)
Q Consensus 451 ~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds--------Av~~iM~~ 522 (653)
.+++|+-|+..++++.|...+.. ++.|.+.||+|++|... .+-...++
T Consensus 224 v~r~G~dvtIia~G~~v~~Al~A------------------------a~~L~~~GI~v~VId~~~ikPlD~~~l~~~~~~ 279 (356)
T PLN02683 224 IEREGKDVTIVAFSKMVGYALKA------------------------AEILAKEGISAEVINLRSIRPLDRDTINASVRK 279 (356)
T ss_pred EEEcCCCEEEEEccHHHHHHHHH------------------------HHHHHhcCCCEEEEECCCCCccCHHHHHHHHhh
Confidence 34556555666666666544433 34555666666665432 23344456
Q ss_pred ccEEEEcceeEecCCCeecccchHHHHHHHhh----CCCCeeeecc
Q 006256 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYG----FHIPVLVCCE 564 (653)
Q Consensus 523 Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~----~~VPVyV~ae 564 (653)
...|| ++.++....-.|+...+.++.. ...|+.-++-
T Consensus 280 t~~vv-----tvEE~~~~GGlGs~Va~~l~e~~f~~~~~~v~rlg~ 320 (356)
T PLN02683 280 TNRLV-----TVEEGWPQHGVGAEICASVVEESFDYLDAPVERIAG 320 (356)
T ss_pred cCeEE-----EEeCCCcCCCHHHHHHHHHHHhchhccCCCeEEecc
Confidence 66664 5667777777899999998887 3567776553
No 166
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=45.10 E-value=54 Score=39.40 Aligned_cols=50 Identities=28% Similarity=0.262 Sum_probs=34.1
Q ss_pred CChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH--HHHHHHHhCCCCEEEEc
Q 006256 462 GSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK--LLLRRLVRKGLSCTYTH 512 (653)
Q Consensus 462 g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~--~La~eL~~~GI~vT~I~ 512 (653)
+.|..| ..|..|+++|+..+|+|-=-.=..|+. ..+++|.++|+.|.|-.
T Consensus 369 ~~s~ii-~aL~~Aa~~Gk~V~v~veLkArfde~~ni~wa~~le~aG~~viyg~ 420 (672)
T TIGR03705 369 KDSPII-DALIEAAENGKEVTVVVELKARFDEEANIRWARRLEEAGVHVVYGV 420 (672)
T ss_pred CCcHHH-HHHHHHHHcCCEEEEEEEehhhccchhhHHHHHHHHHcCCEEEEcC
Confidence 356666 667788888999888875222222343 44678999999988843
No 167
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=44.79 E-value=1.7e+02 Score=26.06 Aligned_cols=52 Identities=21% Similarity=0.081 Sum_probs=38.2
Q ss_pred CeeEEEEe-CCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcc
Q 006256 479 KQFRVVIV-DSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (653)
Q Consensus 479 k~f~ViV~-ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGA 530 (653)
+.--||+. -++...+-.++++.+.+.|+++..|+++.-..+-+.+|.+|.-.
T Consensus 53 ~~d~vi~is~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~ad~~l~~~ 105 (131)
T PF01380_consen 53 PDDLVIIISYSGETRELIELLRFAKERGAPVILITSNSESPLARLADIVLYIP 105 (131)
T ss_dssp TTEEEEEEESSSTTHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSEEEEEE
T ss_pred ccceeEeeeccccchhhhhhhHHHHhcCCeEEEEeCCCCCchhhhCCEEEEec
Confidence 33334433 34444566777799999999999999998888888898887643
No 168
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=44.65 E-value=2.2e+02 Score=25.04 Aligned_cols=60 Identities=13% Similarity=-0.001 Sum_probs=36.1
Q ss_pred HHHhCCCCEEEEcc---c---hHHHHhh--hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeee
Q 006256 500 RLVRKGLSCTYTHI---N---AISYIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (653)
Q Consensus 500 eL~~~GI~vT~I~D---s---Av~~iM~--~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~ 562 (653)
.+.+.|++++.+.. + ++..+.. ++|.|++|...=...+ ---.|+.... +.++.++||+|+
T Consensus 64 ~~~~~g~~~~~~~~~~~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~--~~~lGs~~~~-v~~~~~~pvlvv 131 (132)
T cd01988 64 IAASLGVPVHTIIRIDHDIASGILRTAKERQADLIIMGWHGSTSLR--DRLFGGVIDQ-VLESAPCDVAVV 131 (132)
T ss_pred HhhhcCCceEEEEEecCCHHHHHHHHHHhcCCCEEEEecCCCCCcc--ceecCchHHH-HHhcCCCCEEEe
Confidence 44567998876642 1 2333333 5999999998533221 1224664444 457788999885
No 169
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=44.65 E-value=2.9e+02 Score=29.53 Aligned_cols=99 Identities=16% Similarity=0.137 Sum_probs=51.6
Q ss_pred EEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc--------chHHHHhhh-cc-EE
Q 006256 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIHE-VT-RV 526 (653)
Q Consensus 457 vILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D--------sAv~~iM~~-Vd-~V 526 (653)
+++|-+.+..++.++......|. +|+|+.. ..-|.++...+...|++++++.. ..+...+.. .+ ++
T Consensus 57 i~~t~~~t~al~~~~~~l~~~~~--~vlv~~~--~~~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~ 132 (363)
T TIGR02326 57 VLLQGSGTFAVEAVIGSAVPKDG--KLLVVIN--GAYGARIVQIAEYLGIPHHVVDTGEVEPPDVVEVEAILAADPAITH 132 (363)
T ss_pred EEEcCCCHHHHHHHHHhcCCCCC--eEEEEeC--ChhhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhCCCccE
Confidence 44555556677666655544333 3444332 22244444445667998887743 133344432 11 22
Q ss_pred EEcceeEecCCCeecccchHHHHHHHhhCCCCeeee
Q 006256 527 FLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (653)
Q Consensus 527 llGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~ 562 (653)
+.-++.=...|.+ +.+ ..|+-+|+.|+++++|=
T Consensus 133 v~~~~~~~~tG~~-~~i--~~I~~l~~~~g~~livD 165 (363)
T TIGR02326 133 IALVHCETTTGIL-NPI--EAVAKLAHRHGKVTIVD 165 (363)
T ss_pred EEEEeecCCcccc-CcH--HHHHHHHHHcCCEEEEE
Confidence 3333333334543 333 56888899999866653
No 170
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=44.60 E-value=1.6e+02 Score=32.13 Aligned_cols=93 Identities=16% Similarity=0.117 Sum_probs=52.6
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc---c-------hHHHHh-hhcc
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---N-------AISYII-HEVT 524 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D---s-------Av~~iM-~~Vd 524 (653)
.+++|.|.+.++..+++.....|....|++. .|.+.+.... +...|+++..+.. + .+-..+ +++.
T Consensus 92 ~i~it~Ga~~al~~~~~~l~~~gd~~~vlv~--~P~y~~~~~~--~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k 167 (393)
T TIGR03538 92 HVLPVNGTREALFAFAQAVINPGQAPLVVMP--NPFYQIYEGA--ALLAGAEPYFLNCTAENGFLPDFDAVPESVWRRCQ 167 (393)
T ss_pred eEEECCCcHHHHHHHHHHHcCCCCcceEEec--CCCCcchHHH--HHhcCCeEEEeeccccCCCCCCHHHHHHHHhhcce
Confidence 4778889888887666655555543334443 5777766544 3456777766642 1 111111 2344
Q ss_pred EEEEcceeEecCCCeecccch-------HHHHHHHhhCCCCee
Q 006256 525 RVFLGASSVLSNGTVCSRVGT-------ACVAMVAYGFHIPVL 560 (653)
Q Consensus 525 ~VllGAdaIlaNG~V~NKiGT-------~~lAl~Ak~~~VPVy 560 (653)
+|++ + .--|.+|+ ..++-+|+.|++.++
T Consensus 168 ~i~l-------~-~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii 202 (393)
T TIGR03538 168 LLFV-------C-SPGNPTGAVLSLDTLKKLIELADQYGFIIA 202 (393)
T ss_pred EEEE-------e-CCCCCcCcccCHHHHHHHHHHHHHCCEEEE
Confidence 4443 2 23566664 556777888887443
No 171
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=44.50 E-value=1.9e+02 Score=29.96 Aligned_cols=97 Identities=16% Similarity=0.122 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHHH---cCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHH----hhhccEEEEcceeEecC
Q 006256 464 SSAVEMILQHAHE---LGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYI----IHEVTRVFLGASSVLSN 536 (653)
Q Consensus 464 Ss~Ve~vL~~A~e---~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~i----M~~Vd~VllGAdaIlaN 536 (653)
+...+.++.+|++ .+.++-|=|.=|. +|.+.++.|.+.||+|..+..-++... ...++.|=....++-.+
T Consensus 62 ~~d~e~mi~eA~~l~~~~~nv~IKIP~T~---~Gl~Ai~~L~~~GI~vn~T~vfs~~Qa~~Aa~aGa~yIspyvgR~~~~ 138 (220)
T PRK12655 62 SRDAQGMVEEAKRLRNAIPGIVVKIPVTA---EGLAAIKKLKKEGIPTLGTAVYSAAQGLLAALAGAKYVAPYVNRVDAQ 138 (220)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEeCCCH---HHHHHHHHHHHCCCceeEeEecCHHHHHHHHHcCCeEEEeecchHhHc
Confidence 4445667777664 3445444444443 899999999999999987654333333 22444444444444444
Q ss_pred CCeecccchHHHHH---HHhhCCCCeeeeccccc
Q 006256 537 GTVCSRVGTACVAM---VAYGFHIPVLVCCEAYK 567 (653)
Q Consensus 537 G~V~NKiGT~~lAl---~Ak~~~VPVyV~aetyK 567 (653)
|. -|-..+.- +-+.|+.+.=|++.++|
T Consensus 139 g~----dg~~~i~~~~~~~~~~~~~tkILaAS~r 168 (220)
T PRK12655 139 GG----DGIRMVQELQTLLEMHAPESMVLAASFK 168 (220)
T ss_pred CC----CHHHHHHHHHHHHHhcCCCcEEEEEecC
Confidence 32 12222222 22235566666666654
No 172
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=44.49 E-value=1.9e+02 Score=31.90 Aligned_cols=98 Identities=15% Similarity=0.118 Sum_probs=51.3
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchH-HHHHHHH-HhCCCCEEEEccc---hHHHHhh-hccEEEEc
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEG-KLLLRRL-VRKGLSCTYTHIN---AISYIIH-EVTRVFLG 529 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG-~~La~eL-~~~GI~vT~I~Ds---Av~~iM~-~Vd~VllG 529 (653)
.+++|-|.+.++..++....+.|. +|++ ..|.+.| ..+...+ ...|+.+.++... .+...+. +..+|++-
T Consensus 68 ~v~~~~gg~~Ai~~~l~all~~GD--~Vl~--~~p~y~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~ai~~~tklV~l~ 143 (382)
T TIGR02080 68 GAVVTNTGMSAIHLVTTALLGPDD--LLVA--PHDCYGGTYRLLNALAKKGCFRVLFVDQGDEQALRAALAQKPKLVLIE 143 (382)
T ss_pred cEEEEcCHHHHHHHHHHHHcCCCC--EEEE--cCCCcHHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCcCceEEEEE
Confidence 456666666677666655544443 4444 4466665 4444444 4456888876322 2323332 34444442
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 530 AdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
.---..|.++. -..++-+|+.+++.++|
T Consensus 144 -~p~NPtG~~~d---l~~I~~la~~~g~~vvv 171 (382)
T TIGR02080 144 -TPSNPLLRVVD---IAKICHLAKAVGAVVVV 171 (382)
T ss_pred -CCCCCCCEecC---HHHHHHHHHHcCCEEEE
Confidence 11123344443 24677778889876554
No 173
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=44.40 E-value=2.5e+02 Score=29.54 Aligned_cols=91 Identities=15% Similarity=0.171 Sum_probs=49.8
Q ss_pred CEEEEeCChH---HHHHHHHHHHHcCCe--eEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc-chHHHHhhhccEEEEc
Q 006256 456 DVLLTYGSSS---AVEMILQHAHELGKQ--FRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-NAISYIIHEVTRVFLG 529 (653)
Q Consensus 456 dvILT~g~Ss---~Ve~vL~~A~e~gk~--f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D-sAv~~iM~~Vd~VllG 529 (653)
.+++|+|-+- ....+|+.+.+..+. +.|++-...|.. .++-..... .-.+++... +-+..+|..+|.+|..
T Consensus 172 ~iLi~~GG~d~~~~~~~~l~~l~~~~~~~~i~vv~G~~~~~~--~~l~~~~~~-~~~i~~~~~~~~m~~lm~~aDl~Is~ 248 (279)
T TIGR03590 172 RVLVSFGGADPDNLTLKLLSALAESQINISITLVTGSSNPNL--DELKKFAKE-YPNIILFIDVENMAELMNEADLAIGA 248 (279)
T ss_pred eEEEEeCCcCCcCHHHHHHHHHhccccCceEEEEECCCCcCH--HHHHHHHHh-CCCEEEEeCHHHHHHHHHHCCEEEEC
Confidence 4677887542 234555554443344 444443444543 233222222 224555443 4688899999999763
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCCeeeecc
Q 006256 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCE 564 (653)
Q Consensus 530 AdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~ae 564 (653)
.| . ...=+-..|+|+++++-
T Consensus 249 -------------~G-~-T~~E~~a~g~P~i~i~~ 268 (279)
T TIGR03590 249 -------------AG-S-TSWERCCLGLPSLAICL 268 (279)
T ss_pred -------------Cc-h-HHHHHHHcCCCEEEEEe
Confidence 23 1 23334557899998864
No 174
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=44.39 E-value=2.4e+02 Score=31.28 Aligned_cols=96 Identities=21% Similarity=0.139 Sum_probs=47.3
Q ss_pred EEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH--HHHHhCCCCEEEEccc---hHHHHhh-hccEEEEcce
Q 006256 458 LLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL--RRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLGAS 531 (653)
Q Consensus 458 ILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La--~eL~~~GI~vT~I~Ds---Av~~iM~-~Vd~VllGAd 531 (653)
+++.+.+.++...|....+.|. +|++. .|.+.|.... ..+...|++++++... .+...+. +..+|++ ..
T Consensus 84 ~~~~sG~~Ai~~~l~~~l~~Gd--~Vl~~--~~~y~~~~~~~~~~~~~~G~~v~~vd~~d~e~l~~ai~~~tklV~l-es 158 (398)
T PRK07504 84 RATASGMAAVTAAILCQVKAGD--HVVAA--RALFGSCRYVVETLLPRYGIESTLVDGLDLDNWEKAVRPNTKVFFL-ES 158 (398)
T ss_pred eEecCHHHHHHHHHHHHhCCCC--EEEEc--CCchhHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCcCceEEEE-EC
Confidence 3343334455444443333343 55554 3566665443 2345678888887432 2222222 3333433 22
Q ss_pred eEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 532 SVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 532 aIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
-.-..|.++. -..++-+|+++|++++|
T Consensus 159 p~NptG~v~d---l~~I~~la~~~gi~lvv 185 (398)
T PRK07504 159 PTNPTLEVID---IAAVAKIANQAGAKLVV 185 (398)
T ss_pred CCCCCcEecC---HHHHHHHHHHcCCEEEE
Confidence 2222344443 35677788889887765
No 175
>PRK05939 hypothetical protein; Provisional
Probab=44.30 E-value=2.4e+02 Score=31.44 Aligned_cols=94 Identities=13% Similarity=0.134 Sum_probs=52.6
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchH-HHHHHHHHhCCCCEEEEccc---hHHHHhh-hccEEEEcc
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEG-KLLLRRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLGA 530 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG-~~La~eL~~~GI~vT~I~Ds---Av~~iM~-~Vd~VllGA 530 (653)
..|++-+...++..+|......|. +|++.+ +.+-+ ..+...|...|+.++++... .+-..+. +..+|++
T Consensus 64 ~~v~~ssG~~Ai~~~l~all~~Gd--~Vv~~~--~~y~~t~~~~~~l~~~G~~v~~v~~~d~e~l~~~l~~~tklV~v-- 137 (397)
T PRK05939 64 GTVCFATGMAAIAAVFLTLLRAGD--HLVSSQ--FLFGNTNSLFGTLRGLGVEVTMVDATDVQNVAAAIRPNTRMVFV-- 137 (397)
T ss_pred eEEEeCCHHHHHHHHHHHHcCCCC--EEEECC--CccccHHHHHHHHHhcCCEEEEECCCCHHHHHHhCCCCCeEEEE--
Confidence 345555445566666655544443 566644 44433 34445677889999888532 2333332 3444443
Q ss_pred eeEecCCCeecccchH----HHHHHHhhCCCCeee
Q 006256 531 SSVLSNGTVCSRVGTA----CVAMVAYGFHIPVLV 561 (653)
Q Consensus 531 daIlaNG~V~NKiGT~----~lAl~Ak~~~VPVyV 561 (653)
+ .+.|..|.. .++-+||+|+++++|
T Consensus 138 -----e-sp~NptG~v~dl~~I~~la~~~gi~liv 166 (397)
T PRK05939 138 -----E-TIANPGTQVADLAGIGALCRERGLLYVV 166 (397)
T ss_pred -----E-CCCCCCCCHHhHHHHHHHHHHcCCEEEE
Confidence 2 344555533 466788999987776
No 176
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=44.20 E-value=1.8e+02 Score=32.40 Aligned_cols=103 Identities=23% Similarity=0.248 Sum_probs=58.1
Q ss_pred ccCCCEEEEeCChH-HHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHH-HHHhCCCCEEEEccchHH---HHhh-hccE
Q 006256 452 IRDGDVLLTYGSSS-AVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLR-RLVRKGLSCTYTHINAIS---YIIH-EVTR 525 (653)
Q Consensus 452 I~dGdvILT~g~Ss-~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~-eL~~~GI~vT~I~DsAv~---~iM~-~Vd~ 525 (653)
|..|+-.+.++.+- ++...|....+.|. +|++.. .-|..-.++.+ .|...||.++++....+. ..+. ++.+
T Consensus 67 Le~g~~a~~~~SGmaAi~~~l~~ll~~Gd--~iv~~~-~~Y~~t~~~~~~~l~~~gv~v~~~d~~d~~~l~~~l~~~t~~ 143 (386)
T PF01053_consen 67 LEGGEDALLFSSGMAAISAALLALLKPGD--HIVASD-DLYGGTYRLLEELLPRFGVEVTFVDPTDLEALEAALRPNTKL 143 (386)
T ss_dssp HHT-SEEEEESSHHHHHHHHHHHHS-TTB--EEEEES-SSSHHHHHHHHHCHHHTTSEEEEESTTSHHHHHHHHCTTEEE
T ss_pred hhcccceeeccchHHHHHHHHHhhcccCC--ceEecC-CccCcchhhhhhhhcccCcEEEEeCchhHHHHHhhccccceE
Confidence 44566666666654 55455665555554 455433 44555667774 588899999999654333 3443 5666
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHhhCC-CCeee
Q 006256 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFH-IPVLV 561 (653)
Q Consensus 526 VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~-VPVyV 561 (653)
|++-. . .|= .+.-.=-..++-+||.+| ++++|
T Consensus 144 v~~Es--p-sNP-~l~v~Dl~~i~~~a~~~g~~~~vV 176 (386)
T PF01053_consen 144 VFLES--P-SNP-TLEVPDLEAIAKLAKEHGDILVVV 176 (386)
T ss_dssp EEEES--S-BTT-TTB---HHHHHHHHHHTTT-EEEE
T ss_pred EEEEc--C-CCc-ccccccHHHHHHHHHHhCCceEEe
Confidence 66542 1 121 122223345777899998 77666
No 177
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=44.00 E-value=90 Score=34.19 Aligned_cols=102 Identities=18% Similarity=0.177 Sum_probs=67.0
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHH-hCCCCEEEEccchHHHHhhhccEEEEcc--ee
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLV-RKGLSCTYTHINAISYIIHEVTRVFLGA--SS 532 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~-~~GI~vT~I~DsAv~~iM~~Vd~VllGA--da 532 (653)
|..+.+=-...+...+.+|.+.|.+.-|++.|.-|...+.++.+.+. +.| +.+|=-|+.+.+-+.. ..+|. ..
T Consensus 90 D~avI~VPa~~v~dai~Ea~~aGI~~~ViiteGfpe~d~~~l~~~~~~~~g--~rliGPNc~Gii~p~~--~~~gi~p~~ 165 (317)
T PTZ00187 90 DASVIYVPPPHAASAIIEAIEAEIPLVVCITEGIPQHDMVKVKHALLSQNK--TRLIGPNCPGIIKPGE--CKIGIMPGH 165 (317)
T ss_pred CEEEEecCHHHHHHHHHHHHHcCCCEEEEECCCCchhhHHHHHHHHhhcCC--CEEECCCCceEEcchh--hccccCCcC
Confidence 55555555666668889999999999999999999988888774443 244 4677666666655432 22332 12
Q ss_pred EecCC--CeecccchHHHHHH--HhhCCCCeee
Q 006256 533 VLSNG--TVCSRVGTACVAMV--AYGFHIPVLV 561 (653)
Q Consensus 533 IlaNG--~V~NKiGT~~lAl~--Ak~~~VPVyV 561 (653)
++.-| +++++.||+...++ +...++-|--
T Consensus 166 ~~~~G~VgiVSqSGtl~~ei~~~~~~~GlG~S~ 198 (317)
T PTZ00187 166 IHKKGKIGIVSRSGTLTYEAVAQTTAVGLGQST 198 (317)
T ss_pred CCCCCCEEEEeCCHHHHHHHHHHHHHcCCCEEE
Confidence 33346 67999998766654 5555555543
No 178
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=43.80 E-value=1.1e+02 Score=31.59 Aligned_cols=103 Identities=15% Similarity=0.128 Sum_probs=53.8
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHH----------HHh-hh
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAIS----------YII-HE 522 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~----------~iM-~~ 522 (653)
...+++|.|-+.++..++..+... .-+|++. .|.+-+. ...+...|+.+.++....-. ... ++
T Consensus 59 ~~~~~~~~~~t~a~~~~~~~~~~~--g~~vl~~--~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 132 (350)
T cd00609 59 PEEIVVTNGAQEALSLLLRALLNP--GDEVLVP--DPTYPGY--EAAARLAGAEVVPVPLDEEGGFLLDLELLEAAKTPK 132 (350)
T ss_pred cceEEEecCcHHHHHHHHHHhCCC--CCEEEEc--CCCchhH--HHHHHHCCCEEEEEecccccCCccCHHHHHhhcCcc
Confidence 346777777777776666655433 3345553 3444443 33445567777666543221 111 14
Q ss_pred ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeec
Q 006256 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (653)
Q Consensus 523 Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~a 563 (653)
+..|++-. .-...|.+..----..+.-+|+.+|++|+|=+
T Consensus 133 ~~~v~i~~-~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~ 172 (350)
T cd00609 133 TKLLYLNN-PNNPTGAVLSEEELEELAELAKKHGILIISDE 172 (350)
T ss_pred ceEEEEEC-CCCCCCcccCHHHHHHHHHHHHhCCeEEEEec
Confidence 55555533 33334444332222234467899999988644
No 179
>PRK10481 hypothetical protein; Provisional
Probab=43.68 E-value=2.8e+02 Score=28.95 Aligned_cols=85 Identities=13% Similarity=0.083 Sum_probs=51.9
Q ss_pred HHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc----hHHHHhhhcc-EEEEcceeEecCCCeecccch
Q 006256 471 LQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN----AISYIIHEVT-RVFLGASSVLSNGTVCSRVGT 545 (653)
Q Consensus 471 L~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds----Av~~iM~~Vd-~VllGAdaIlaNG~V~NKiGT 545 (653)
+..|.-.|++|-|++..- .++.+..++....|+++.+...+ ....+..-+. +.--|||.|+-++.=++.
T Consensus 122 lv~Al~~g~riGVitP~~---~qi~~~~~kw~~~G~~v~~~~aspy~~~~~~l~~aa~~L~~~gaD~Ivl~C~G~~~--- 195 (224)
T PRK10481 122 LVAAIVGGHQVGVIVPVE---EQLAQQAQKWQVLQKPPVFALASPYHGSEEELIDAGKELLDQGADVIVLDCLGYHQ--- 195 (224)
T ss_pred HHHHhcCCCeEEEEEeCH---HHHHHHHHHHHhcCCceeEeecCCCCCCHHHHHHHHHHhhcCCCCEEEEeCCCcCH---
Confidence 344555688899987432 24556667777779998877622 1111111111 112467777766655554
Q ss_pred HHHHHHHhhCCCCeee
Q 006256 546 ACVAMVAYGFHIPVLV 561 (653)
Q Consensus 546 ~~lAl~Ak~~~VPVyV 561 (653)
-..+.+.+..++||+-
T Consensus 196 ~~~~~le~~lg~PVI~ 211 (224)
T PRK10481 196 RHRDLLQKALDVPVLL 211 (224)
T ss_pred HHHHHHHHHHCcCEEc
Confidence 4478899999999984
No 180
>PLN02778 3,5-epimerase/4-reductase
Probab=43.60 E-value=80 Score=33.33 Aligned_cols=26 Identities=19% Similarity=0.102 Sum_probs=22.0
Q ss_pred ecccchHHHHHHHhhCCCCeeeeccc
Q 006256 540 CSRVGTACVAMVAYGFHIPVLVCCEA 565 (653)
Q Consensus 540 ~NKiGT~~lAl~Ak~~~VPVyV~aet 565 (653)
.|-.||..++-+|+++++.+++..-+
T Consensus 86 ~Nv~gt~~ll~aa~~~gv~~v~~sS~ 111 (298)
T PLN02778 86 ANVVGTLTLADVCRERGLVLTNYATG 111 (298)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEecc
Confidence 67889999999999999998776543
No 181
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=43.55 E-value=1.8e+02 Score=32.40 Aligned_cols=98 Identities=14% Similarity=0.083 Sum_probs=51.3
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchH-HHHH-HHHHhCCCCEEEEccc---hHHHHhh-hccEEEEc
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEG-KLLL-RRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLG 529 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG-~~La-~eL~~~GI~vT~I~Ds---Av~~iM~-~Vd~VllG 529 (653)
.+++|.|.+.++..++....+.| -+|++. .|.+.| ..+. ..+...|+.++++... .+...+. +.++|++.
T Consensus 70 ~ivvt~gg~~Ai~~~l~all~~G--d~Il~~--~~~y~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~i~~~tklV~le 145 (388)
T PRK08861 70 GAVVTNCGTSALNLWVSALLGPD--DLIVAP--HDCYGGTYRLFNTRANKGDFKVQFVDQSDAAALDAALAKKPKLILLE 145 (388)
T ss_pred eEEEECCHHHHHHHHHHHHcCCC--CEEEEc--CCchHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHhcCcCCeEEEEE
Confidence 45556555556655555544333 345543 466665 3444 3345568888887532 2222232 44555543
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 530 AdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
.---..|.++. -..++-+|++++++|+|
T Consensus 146 -sP~NPtG~v~d---l~~I~~la~~~gi~vIv 173 (388)
T PRK08861 146 -TPSNPLVRVVD---IAELCQKAKAVGALVAV 173 (388)
T ss_pred -CCCCCCCcccC---HHHHHHHHHHcCCEEEE
Confidence 11112244433 23577788999886654
No 182
>PRK05764 aspartate aminotransferase; Provisional
Probab=43.37 E-value=1.9e+02 Score=31.30 Aligned_cols=96 Identities=19% Similarity=0.205 Sum_probs=50.2
Q ss_pred ccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc----------hHHHHhh
Q 006256 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN----------AISYIIH 521 (653)
Q Consensus 452 I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds----------Av~~iM~ 521 (653)
+..+.+++|.|.+.++..++..+.+.|. +|++ ++ |.+.+.. ..+...|+++..+... .+...+.
T Consensus 89 ~~~~~i~~~~g~~~a~~~~~~~~~~~gd--~vl~-~~-p~y~~~~--~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~ 162 (393)
T PRK05764 89 YDPSQVIVTTGAKQALYNAFMALLDPGD--EVII-PA-PYWVSYP--EMVKLAGGVPVFVPTGEENGFKLTVEQLEAAIT 162 (393)
T ss_pred CCHHHEEEeCCcHHHHHHHHHHhcCCCC--EEEe-cC-CCCcchH--HHHHHcCCEEEEEecCcccCCcCCHHHHHHhhC
Confidence 3345678888877777665555544343 3444 33 5554432 2234568877766421 1222221
Q ss_pred -hccEEEEcceeEecCCCeecccchH-------HHHHHHhhCCCCeee
Q 006256 522 -EVTRVFLGASSVLSNGTVCSRVGTA-------CVAMVAYGFHIPVLV 561 (653)
Q Consensus 522 -~Vd~VllGAdaIlaNG~V~NKiGT~-------~lAl~Ak~~~VPVyV 561 (653)
++..|++- ..-|..|.. .++-+|+.|++.++|
T Consensus 163 ~~~~~v~~~--------~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~ 202 (393)
T PRK05764 163 PKTKALILN--------SPSNPTGAVYSPEELEAIADVAVEHDIWVLS 202 (393)
T ss_pred ccceEEEEE--------CCCCCCCcccCHHHHHHHHHHHHHCCcEEEE
Confidence 23333321 134555653 456678889987765
No 183
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=43.31 E-value=2.2e+02 Score=32.16 Aligned_cols=100 Identities=15% Similarity=0.219 Sum_probs=59.4
Q ss_pred CCCEEEEeCChHHHHHHHHH---HHH-cCCeeEEEEeCCCCCchH-HHHHHHHHhCCCCEEEEccchHH-----HHhh--
Q 006256 454 DGDVLLTYGSSSAVEMILQH---AHE-LGKQFRVVIVDSRPKHEG-KLLLRRLVRKGLSCTYTHINAIS-----YIIH-- 521 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~---A~e-~gk~f~ViV~ESRP~~EG-~~La~eL~~~GI~vT~I~DsAv~-----~iM~-- 521 (653)
..++|.|-|-.....-+|+- +.. +.+.-++|+.... ... ...++.|...|.+|||+.-..=+ .+.+
T Consensus 61 ~~eIiFTSG~TEsnNlaI~g~~~a~~~~~~~~HIIts~iE--H~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al 138 (386)
T COG1104 61 PEEIIFTSGATESNNLAIKGAALAYRNAQKGKHIITSAIE--HPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEAL 138 (386)
T ss_pred CCeEEEecCCcHHHHHHHHhhHHhhhcccCCCeEEEcccc--cHHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhc
Confidence 46889999987655444543 222 1234566664432 222 23347787789999999654322 2222
Q ss_pred hccEEEEcceeEecCCCeecccchHH----HHHHHhhCCCCeee
Q 006256 522 EVTRVFLGASSVLSNGTVCSRVGTAC----VAMVAYGFHIPVLV 561 (653)
Q Consensus 522 ~Vd~VllGAdaIlaNG~V~NKiGT~~----lAl~Ak~~~VPVyV 561 (653)
+=|.++|- -+ .+=|-+||.| ++-+||+++++|.|
T Consensus 139 ~~~T~LVS--im----~aNnE~G~IQpI~ei~~i~k~~~i~fHv 176 (386)
T COG1104 139 RPDTILVS--IM----HANNETGTIQPIAEIGEICKERGILFHV 176 (386)
T ss_pred CCCceEEE--EE----ecccCeeecccHHHHHHHHHHcCCeEEE
Confidence 12333332 12 3457788864 88899999999887
No 184
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=42.79 E-value=2.4e+02 Score=31.20 Aligned_cols=94 Identities=21% Similarity=0.199 Sum_probs=52.8
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchH-HHHH-HHHHhCCCCEEEEcc---chHHHHhh-hccEEEEc
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEG-KLLL-RRLVRKGLSCTYTHI---NAISYIIH-EVTRVFLG 529 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG-~~La-~eL~~~GI~vT~I~D---sAv~~iM~-~Vd~VllG 529 (653)
++++|-+...++..+|....+.| -+|++. .|.+.+ ..++ ..+...|++++++.. ..+...+. +..+|++-
T Consensus 67 ~~~~~~sG~~Ai~~al~all~~G--D~Vl~~--~~~y~~t~~~~~~~~~~~gi~v~~~d~~~~e~l~~~i~~~tklV~le 142 (377)
T TIGR01324 67 GCYLYPSGLAAVTNSILAFVKAG--DHVLMV--DSAYEPTRYFCDIVLKRMGVDITYYDPLIGEDIATLIQPNTKVLFLE 142 (377)
T ss_pred cEEEECcHHHHHHHHHHHhcCCC--CEEEEc--CCCcHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCCCceEEEEE
Confidence 55666655556666665554434 356665 455544 3445 346678999887732 23444443 34444431
Q ss_pred ceeEecCCCeecccchH----HHHHHHhhCCCCeee
Q 006256 530 ASSVLSNGTVCSRVGTA----CVAMVAYGFHIPVLV 561 (653)
Q Consensus 530 AdaIlaNG~V~NKiGT~----~lAl~Ak~~~VPVyV 561 (653)
...|..|.. .|+-+|+.+++.++|
T Consensus 143 --------sp~Np~g~~~dl~~I~~la~~~g~~liv 170 (377)
T TIGR01324 143 --------APSSITFEIQDIPAIAKAARNPGIVIMI 170 (377)
T ss_pred --------CCCCCCCcHHHHHHHHHHHHHcCCEEEE
Confidence 234444543 367788999987775
No 185
>PLN02591 tryptophan synthase
Probab=42.74 E-value=2.7e+02 Score=29.33 Aligned_cols=102 Identities=20% Similarity=0.229 Sum_probs=66.0
Q ss_pred CEEEEeCC---hHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc-cch----HHHHhhhccEEE
Q 006256 456 DVLLTYGS---SSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-INA----ISYIIHEVTRVF 527 (653)
Q Consensus 456 dvILT~g~---Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~-DsA----v~~iM~~Vd~Vl 527 (653)
-++|||-| ..-+++|+..+.+.|-. -|++.| -|..|...+...+.+.||....+. .+. +..+....+-.|
T Consensus 81 ~ilm~Y~N~i~~~G~~~F~~~~~~aGv~-GviipD-LP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFI 158 (250)
T PLN02591 81 IVLFTYYNPILKRGIDKFMATIKEAGVH-GLVVPD-LPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFV 158 (250)
T ss_pred EEEEecccHHHHhHHHHHHHHHHHcCCC-EEEeCC-CCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcE
Confidence 36888876 44688999999887754 566665 477888899999999999866553 443 344444433222
Q ss_pred EcceeEecCCCeecccc-----hHHHHHHHhhCCCCeeee
Q 006256 528 LGASSVLSNGTVCSRVG-----TACVAMVAYGFHIPVLVC 562 (653)
Q Consensus 528 lGAdaIlaNG~V~NKiG-----T~~lAl~Ak~~~VPVyV~ 562 (653)
..|..+|-.-.+.+ ...+..+-++.++|++|=
T Consensus 159 ---Y~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~vG 195 (250)
T PLN02591 159 ---YLVSSTGVTGARASVSGRVESLLQELKEVTDKPVAVG 195 (250)
T ss_pred ---EEeeCCCCcCCCcCCchhHHHHHHHHHhcCCCceEEe
Confidence 33444555444433 223566666678999873
No 186
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=42.67 E-value=69 Score=30.56 Aligned_cols=69 Identities=19% Similarity=0.104 Sum_probs=44.6
Q ss_pred CCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCC
Q 006256 478 GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHI 557 (653)
Q Consensus 478 gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~V 557 (653)
+...++--.+..|...|...+.-|.+.|++|.++. +|.|+++ |.....--...++-.|+++++
T Consensus 23 ~~~~~~~~~~~~~GG~~~n~a~~l~~LG~~~~~~~----------~~~v~i~-------~~~~~~~~~~~~~~~~~~~~~ 85 (196)
T cd00287 23 GGLVRPGDTEERAGGGAANVAVALARLGVSVTLVG----------ADAVVIS-------GLSPAPEAVLDALEEARRRGV 85 (196)
T ss_pred CCeEEeceeeecCCCcHHHHHHHHHHCCCcEEEEE----------ccEEEEe-------cccCcHHHHHHHHHHHHHcCC
Confidence 33334444456677788999999999999999988 4555554 432221223345556888899
Q ss_pred Ceeeec
Q 006256 558 PVLVCC 563 (653)
Q Consensus 558 PVyV~a 563 (653)
|+++=.
T Consensus 86 ~v~~D~ 91 (196)
T cd00287 86 PVVLDP 91 (196)
T ss_pred eEEEeC
Confidence 977644
No 187
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=42.52 E-value=1.9e+02 Score=32.46 Aligned_cols=96 Identities=18% Similarity=0.278 Sum_probs=51.9
Q ss_pred EEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHH-HH-HHHHhCCCCEEEEccc---hHHHHhh-hccEEEEcc
Q 006256 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKL-LL-RRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLGA 530 (653)
Q Consensus 457 vILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~-La-~eL~~~GI~vT~I~Ds---Av~~iM~-~Vd~VllGA 530 (653)
.|++-+.+.++..+|+.+...| -+|++.. +.+.|.. +. ..+...|+.++++... .+-..+. ++.+|++
T Consensus 81 al~~~SG~~Ai~~al~all~pG--d~VIv~~--~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~ai~~~tklV~v-- 154 (427)
T PRK05994 81 ALAVASGHAAQFLVFHTLLQPG--DEFIAAR--KLYGGSINQFGHAFKSFGWQVRWADADDPASFERAITPRTKAIFI-- 154 (427)
T ss_pred EEEEcCHHHHHHHHHHHHhCCC--CEEEEec--CcchhHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEE--
Confidence 4444444446666666555444 3555543 4455543 22 4467789999888532 2333332 3444544
Q ss_pred eeEe-cCCCeecccchHHHHHHHhhCCCCeee
Q 006256 531 SSVL-SNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 531 daIl-aNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
+.+. ..|.++. -..|+-+|++|+++++|
T Consensus 155 esp~NptG~v~d---l~~I~~la~~~gi~liv 183 (427)
T PRK05994 155 ESIANPGGTVTD---IAAIAEVAHRAGLPLIV 183 (427)
T ss_pred ECCCCCCCeecC---HHHHHHHHHHcCCEEEE
Confidence 2221 2243332 24577789999988776
No 188
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=42.52 E-value=84 Score=35.88 Aligned_cols=71 Identities=20% Similarity=0.262 Sum_probs=43.0
Q ss_pred CCEEEEeCChH--HHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHH-HhCCC--CEEEEccchHHHHhh-hccEEE
Q 006256 455 GDVLLTYGSSS--AVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRL-VRKGL--SCTYTHINAISYIIH-EVTRVF 527 (653)
Q Consensus 455 GdvILT~g~Ss--~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL-~~~GI--~vT~I~DsAv~~iM~-~Vd~Vl 527 (653)
+.+||..|.++ .+..+++.+.+.+...+||.+|--|.- ...++++ ...|. .|++|...+=-.-.+ +||.+|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A--~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIV 263 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNA--VVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIV 263 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHH--HHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhH--HHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEE
Confidence 46899998776 666667776677889999999987742 1222333 44443 577776554333333 566664
No 189
>PRK13936 phosphoheptose isomerase; Provisional
Probab=42.08 E-value=3.7e+02 Score=26.90 Aligned_cols=34 Identities=0% Similarity=-0.094 Sum_probs=21.6
Q ss_pred HHHHHHHHhCCCCEEEEcc---chHHHHhhhccEEEE
Q 006256 495 KLLLRRLVRKGLSCTYTHI---NAISYIIHEVTRVFL 528 (653)
Q Consensus 495 ~~La~eL~~~GI~vT~I~D---sAv~~iM~~Vd~Vll 528 (653)
.++++.+.+.|+++..|+. +.++-+...+|.+|.
T Consensus 128 ~~~~~~ak~~g~~iI~IT~~~~s~l~~l~~~ad~~l~ 164 (197)
T PRK13936 128 IQAIQAAHEREMHVVALTGRDGGKMASLLLPEDVEIR 164 (197)
T ss_pred HHHHHHHHHCCCeEEEEECCCCChhhhhhccCCEEEE
Confidence 4456777788888888877 444444334676654
No 190
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=42.04 E-value=16 Score=38.43 Aligned_cols=39 Identities=18% Similarity=0.340 Sum_probs=22.3
Q ss_pred hhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeecccc
Q 006256 521 HEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (653)
Q Consensus 521 ~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~aety 566 (653)
.++|.+++..|....+ ....+...+.++++|+|...+.+
T Consensus 183 ~~~da~~~~~~~~~~~-------~~~~i~~~~~~~~iPv~~~~~~~ 221 (294)
T PF04392_consen 183 EKVDALYLLPDNLVDS-------NFEAILQLANEAKIPVFGSSDFY 221 (294)
T ss_dssp TT-SEEEE-S-HHHHH-------THHHHHHHCCCTT--EEESSHHH
T ss_pred ccCCEEEEECCcchHh-------HHHHHHHHHHhcCCCEEECCHHH
Confidence 3688888877654332 12226778899999999876543
No 191
>PLN02656 tyrosine transaminase
Probab=41.96 E-value=2.4e+02 Score=31.08 Aligned_cols=97 Identities=22% Similarity=0.319 Sum_probs=52.1
Q ss_pred ccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc---c-------hHHHHhh
Q 006256 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---N-------AISYIIH 521 (653)
Q Consensus 452 I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D---s-------Av~~iM~ 521 (653)
+....+++|.|.+.++..++....+.|. +|++. .|.+.+...+..+ .|+.+.++.. . .+...+.
T Consensus 94 ~~~~~i~~t~G~~~al~~~~~~l~~~gd--~Vlv~--~p~y~~~~~~~~~--~g~~~~~i~~~~~~~~~~d~~~l~~~~~ 167 (409)
T PLN02656 94 LSLDDVFITSGCTQAIDVALSMLARPGA--NILLP--RPGFPIYELCAAF--RHLEVRYVDLLPEKGWEVDLDAVEALAD 167 (409)
T ss_pred CCcccEEEeCChHHHHHHHHHHHhCCCC--eEEEe--CCCCCcHHHHHHH--cCCEEEEEeCCCcCCCCCCHHHHHHHhc
Confidence 4455788888888887665555443343 55554 4656554444333 5777766642 1 1111221
Q ss_pred hccEEEEcceeEecCCCeecccchH-------HHHHHHhhCCCCeee
Q 006256 522 EVTRVFLGASSVLSNGTVCSRVGTA-------CVAMVAYGFHIPVLV 561 (653)
Q Consensus 522 ~Vd~VllGAdaIlaNG~V~NKiGT~-------~lAl~Ak~~~VPVyV 561 (653)
.-++++ ++.|- -|..|+. .++-+|+.|++++++
T Consensus 168 ~~~~~v-----~l~~P--~NPtG~~~s~~~~~~i~~~a~~~~~~ii~ 207 (409)
T PLN02656 168 QNTVAL-----VIINP--GNPCGNVYSYQHLKKIAETAEKLKILVIA 207 (409)
T ss_pred cCceEE-----EEECC--CCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 112222 22232 3666654 356678889987764
No 192
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=41.87 E-value=4.8e+02 Score=28.13 Aligned_cols=16 Identities=19% Similarity=0.139 Sum_probs=10.9
Q ss_pred HHHHHHHhhCCCCeee
Q 006256 546 ACVAMVAYGFHIPVLV 561 (653)
Q Consensus 546 ~~lAl~Ak~~~VPVyV 561 (653)
-.|+-+|+.||+.|+|
T Consensus 176 ~~i~~~~~~~~~~~iv 191 (397)
T TIGR01976 176 AAITELVHAAGALVVV 191 (397)
T ss_pred HHHHHHHHHcCCEEEE
Confidence 3566678888876654
No 193
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=41.85 E-value=77 Score=34.00 Aligned_cols=73 Identities=16% Similarity=0.164 Sum_probs=42.0
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCC-eeEEEEeCC-CCCchHHHHHHHHHhCCCCEEEEc---c------chHHHHhh--h
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGK-QFRVVIVDS-RPKHEGKLLLRRLVRKGLSCTYTH---I------NAISYIIH--E 522 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk-~f~ViV~ES-RP~~EG~~La~eL~~~GI~vT~I~---D------sAv~~iM~--~ 522 (653)
-.||..|+++.++.+|. +.+.|. ..+|.++=| +|...+. ..+.|||+.++. + ..+...|+ +
T Consensus 92 i~vl~Sg~g~nl~al~~-~~~~~~~~~~i~~visn~~~~~~l-----A~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~ 165 (286)
T PRK13011 92 VLIMVSKFDHCLNDLLY-RWRIGELPMDIVGVVSNHPDLEPL-----AAWHGIPFHHFPITPDTKPQQEAQVLDVVEESG 165 (286)
T ss_pred EEEEEcCCcccHHHHHH-HHHcCCCCcEEEEEEECCccHHHH-----HHHhCCCEEEeCCCcCchhhhHHHHHHHHHHhC
Confidence 35777788888876554 455554 455554433 6643222 566799998873 1 12233343 5
Q ss_pred ccEEEE-cceeEe
Q 006256 523 VTRVFL-GASSVL 534 (653)
Q Consensus 523 Vd~Vll-GAdaIl 534 (653)
+|.+++ |-.+|+
T Consensus 166 ~Dlivlagy~~il 178 (286)
T PRK13011 166 AELVVLARYMQVL 178 (286)
T ss_pred cCEEEEeChhhhC
Confidence 787766 333443
No 194
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=41.53 E-value=37 Score=35.81 Aligned_cols=41 Identities=12% Similarity=0.040 Sum_probs=32.6
Q ss_pred EEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH
Q 006256 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL 498 (653)
Q Consensus 457 vILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La 498 (653)
+||..|.++-+ .+++.+++.|..++||+++..|..-|..++
T Consensus 3 ~vLv~g~~~~~-~~~~~l~~~~~g~~vi~~d~~~~~~~~~~~ 43 (326)
T PRK12767 3 NILVTSAGRRV-QLVKALKKSLLKGRVIGADISELAPALYFA 43 (326)
T ss_pred eEEEecCCccH-HHHHHHHHhccCCEEEEECCCCcchhhHhc
Confidence 57887777666 778888877778999999999988776644
No 195
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=41.44 E-value=2.6e+02 Score=31.08 Aligned_cols=98 Identities=18% Similarity=0.158 Sum_probs=50.9
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHH-HHHHhCCCCEEEEccc---hHHHHhh-hccEEEEc
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLG 529 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La-~eL~~~GI~vT~I~Ds---Av~~iM~-~Vd~VllG 529 (653)
+.|++-+...++..+|......|. +|++. .|.+.|. .+. ..+...|++++++... .+...+. +..+|++-
T Consensus 81 ~~i~~ssG~~Ai~~~l~all~~GD--~Vi~~--~~~y~~~~~~~~~~~~~~Gi~v~~vd~~d~e~l~~~i~~~tklV~ie 156 (398)
T PRK08249 81 AATAFSTGMAAISNTLYTFLKPGD--RVVSI--KDTYGGTNKIFTEFLPRMGVDVTLCETGDHEQIEAEIAKGCDLLYLE 156 (398)
T ss_pred eEEEeCChHHHHHHHHHHhcCCCC--EEEEc--CCchHHHHHHHHHHHhhCCeEEEEcCCCCHHHHHHhcCCCCeEEEEE
Confidence 345554444566555555444443 45553 3555554 333 3466789998876532 2333332 34455542
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 530 AdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
. ---..|.+.. -..++-+|+.|+++++|
T Consensus 157 ~-p~NPtg~v~d---l~~I~~la~~~gi~liv 184 (398)
T PRK08249 157 T-PTNPTLKIVD---IERLAAAAKKVGALVVV 184 (398)
T ss_pred C-CCCCCCccCC---HHHHHHHHHHcCCEEEE
Confidence 1 1112233332 23577789999997765
No 196
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=41.23 E-value=4.3e+02 Score=27.98 Aligned_cols=38 Identities=18% Similarity=0.047 Sum_probs=31.7
Q ss_pred chHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEc
Q 006256 492 HEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLG 529 (653)
Q Consensus 492 ~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllG 529 (653)
.+-.++++.+.+.|+++..|+.+.-+.+-+.+|.+|.-
T Consensus 103 ~~~~~~~~~ak~~g~~vI~iT~~~~s~la~~ad~~l~~ 140 (321)
T PRK11543 103 KELDLIIPRLEDKSIALLAMTGKPTSPLGLAAKAVLDI 140 (321)
T ss_pred HHHHHHHHHHHHcCCeEEEEECCCCChhHHhCCEEEEc
Confidence 35567779999999999999998888888889998853
No 197
>PRK12414 putative aminotransferase; Provisional
Probab=41.19 E-value=3.2e+02 Score=29.72 Aligned_cols=97 Identities=14% Similarity=0.160 Sum_probs=50.0
Q ss_pred CCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccch------HHHHhhhccEEEE
Q 006256 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA------ISYIIHEVTRVFL 528 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsA------v~~iM~~Vd~Vll 528 (653)
.++|+|.|.+..+..++......| -+|++. .|.+.+.... +...|..+..+.... +..+-+.++.
T Consensus 91 ~~i~it~g~~~al~~~~~~l~~~g--d~Vlv~--~p~y~~~~~~--~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~--- 161 (384)
T PRK12414 91 SEVTVIASASEGLYAAISALVHPG--DEVIYF--EPSFDSYAPI--VRLQGATPVAIKLSPEDFRVNWDEVAAAITP--- 161 (384)
T ss_pred CcEEEECChHHHHHHHHHHhcCCC--CEEEEe--CCCccchHHH--HHHcCCEEEEEecCccccccCHHHHHhhcCc---
Confidence 368888888778766665554434 345553 4666544333 333577665554211 1111111110
Q ss_pred cceeEecCCCeecccch-------HHHHHHHhhCCCCeee
Q 006256 529 GASSVLSNGTVCSRVGT-------ACVAMVAYGFHIPVLV 561 (653)
Q Consensus 529 GAdaIlaNG~V~NKiGT-------~~lAl~Ak~~~VPVyV 561 (653)
....|+-+ ..-|..|+ ..++-+|++|++++++
T Consensus 162 ~~~~v~i~-~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~ 200 (384)
T PRK12414 162 RTRMIIVN-TPHNPSATVFSAADLARLAQLTRNTDIVILS 200 (384)
T ss_pred ccEEEEEc-CCCCCCCcCCCHHHHHHHHHHHHHCCeEEEE
Confidence 12222222 34566776 4456678889987664
No 198
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=40.87 E-value=2.2e+02 Score=30.34 Aligned_cols=94 Identities=17% Similarity=0.037 Sum_probs=53.6
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCC-eeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc-h---------HHHHhh-hc
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGK-QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-A---------ISYIIH-EV 523 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk-~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds-A---------v~~iM~-~V 523 (653)
.+|+|.|.+.++..++......|. .-.|++ + .|.+.+...+ +...|+++..+... . +-..+. +.
T Consensus 62 ~Iiit~Gs~~ai~~~~~~~~~~g~~~d~Vl~-~-~p~y~~~~~~--~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~ 137 (350)
T TIGR03537 62 QVLPSAGSKEAIFHFPLVFIDPEEDRRRVIF-G-TPGYPVYERG--ALFAGGEPTAVKLKKEDGFLLRLEKVEKSILEET 137 (350)
T ss_pred cEEEcCChHHHHHHHHHHHcCCCCCCceEEE-c-CCCCcchHHH--HHhcCCEEEEcccCcccCCccCHHHHHHhhhhcc
Confidence 789999999888666555444331 134444 3 5777665544 34578887776432 1 111222 22
Q ss_pred cEEEEcceeEecCCCeecccch-------HHHHHHHhhCCCCeee
Q 006256 524 TRVFLGASSVLSNGTVCSRVGT-------ACVAMVAYGFHIPVLV 561 (653)
Q Consensus 524 d~VllGAdaIlaNG~V~NKiGT-------~~lAl~Ak~~~VPVyV 561 (653)
..+ +-+ ..-|..|+ ..++-+|+.|++.+++
T Consensus 138 ~~i-------~i~-~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~ 174 (350)
T TIGR03537 138 KIV-------WIN-YPHNPTGATAPRSYLKETIAMCREHGIILCS 174 (350)
T ss_pred EEE-------EEe-CCCCCcCcccCHHHHHHHHHHHHHcCcEEEE
Confidence 222 222 24578883 4456678889987664
No 199
>PRK12320 hypothetical protein; Provisional
Probab=40.27 E-value=50 Score=39.85 Aligned_cols=99 Identities=17% Similarity=0.101 Sum_probs=57.0
Q ss_pred EEEEeCChHHHHH-HHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEE--EccchHHHHhhhccEEEEcceeE
Q 006256 457 VLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTY--THINAISYIIHEVTRVFLGASSV 533 (653)
Q Consensus 457 vILT~g~Ss~Ve~-vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~--I~DsAv~~iM~~Vd~VllGAdaI 533 (653)
.||..|-+-.+.. ++..+.++| .+|++++..+.. +...++.+.. +.|..+..++.++|.||-=|...
T Consensus 2 kILVTGAaGFIGs~La~~Ll~~G--~~Vi~ldr~~~~--------~~~~~ve~v~~Dl~d~~l~~al~~~D~VIHLAa~~ 71 (699)
T PRK12320 2 QILVTDATGAVGRSVTRQLIAAG--HTVSGIAQHPHD--------ALDPRVDYVCASLRNPVLQELAGEADAVIHLAPVD 71 (699)
T ss_pred EEEEECCCCHHHHHHHHHHHhCC--CEEEEEeCChhh--------cccCCceEEEccCCCHHHHHHhcCCCEEEEcCccC
Confidence 4777776544433 334455545 577777654321 1112322211 12334444566788887766432
Q ss_pred ecCCCeecccchHHHHHHHhhCCCCeeeeccc
Q 006256 534 LSNGTVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (653)
Q Consensus 534 laNG~V~NKiGT~~lAl~Ak~~~VPVyV~aet 565 (653)
..+..-.|-.||..+.-+|+.+++.++.+...
T Consensus 72 ~~~~~~vNv~Gt~nLleAA~~~GvRiV~~SS~ 103 (699)
T PRK12320 72 TSAPGGVGITGLAHVANAAARAGARLLFVSQA 103 (699)
T ss_pred ccchhhHHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 22222368899999999999999988776654
No 200
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=40.23 E-value=3e+02 Score=29.33 Aligned_cols=118 Identities=12% Similarity=0.119 Sum_probs=64.4
Q ss_pred HHHHHHHHhccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCC---ch-----------HH----HHHHHHHhC
Q 006256 443 VIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPK---HE-----------GK----LLLRRLVRK 504 (653)
Q Consensus 443 ~Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~---~E-----------G~----~La~eL~~~ 504 (653)
.+++.+.+++. +..|+.+|.+.+=..+...+...|.. ++.++|.... +- |. .|+++|.+.
T Consensus 19 L~G~e~~~kL~-~s~VlVvG~GGVGs~vae~Lar~GVg-~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~I 96 (268)
T PRK15116 19 LYGEKALQLFA-DAHICVVGIGGVGSWAAEALARTGIG-AITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQI 96 (268)
T ss_pred HhCHHHHHHhc-CCCEEEECcCHHHHHHHHHHHHcCCC-EEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhH
Confidence 46777888886 46788888765433334444455633 3444443211 11 11 334566654
Q ss_pred C--CCEEEEcc----chHHHHh-hhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeeccc-cccccc
Q 006256 505 G--LSCTYTHI----NAISYII-HEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEA-YKFHER 571 (653)
Q Consensus 505 G--I~vT~I~D----sAv~~iM-~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~aet-yKf~~~ 571 (653)
. +.++.+.+ ..+..++ .+.|.||...|.+. .| ..+.-.|+.+++|||.+... -|+++.
T Consensus 97 NP~~~V~~i~~~i~~e~~~~ll~~~~D~VIdaiD~~~------~k---~~L~~~c~~~~ip~I~~gGag~k~dp~ 162 (268)
T PRK15116 97 NPECRVTVVDDFITPDNVAEYMSAGFSYVIDAIDSVR------PK---AALIAYCRRNKIPLVTTGGAGGQIDPT 162 (268)
T ss_pred CCCcEEEEEecccChhhHHHHhcCCCCEEEEcCCCHH------HH---HHHHHHHHHcCCCEEEECCcccCCCCC
Confidence 4 34444422 1222333 36788876666442 22 34666789999999988665 444443
No 201
>TIGR01584 citF citrate lyase, alpha subunit. This is a model of the alpha subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The seed contains an experimentally characterized member from Lactococcus lactis subsp. lactis. The model covers both Gram positive and Gram negative bacteria. It is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in between the noise cutoff and trusted cutoff.
Probab=40.21 E-value=1e+02 Score=35.81 Aligned_cols=35 Identities=31% Similarity=0.335 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhc------cCCCEEEEe--CChHHHHHHHHHH
Q 006256 440 ADRVIVKHAVTKI------RDGDVLLTY--GSSSAVEMILQHA 474 (653)
Q Consensus 440 a~~~Ia~~a~~~I------~dGdvILT~--g~Ss~Ve~vL~~A 474 (653)
....|+++++++| +||.++=|= |-+.+|..+|...
T Consensus 231 ~e~~IA~~vA~lI~~s~~~~DG~tlQ~GiGgip~AV~~~L~~~ 273 (492)
T TIGR01584 231 KELLIAKMANDVIVNSGYFKDGFSFQTGTGGAALAVTRFLKEK 273 (492)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCCEEEccCCHHHHHHHHHHHHH
Confidence 3457888988888 799998773 3456777777665
No 202
>TIGR02429 pcaI_scoA_fam 3-oxoacid CoA-transferase, A subunit. Various members of this family are characterized as the A subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by Pfam model pfam01144. The B subunit represents a different clade in pfam01144, described by TIGR02428. The two are found in general as tandem genes and occasionally as a fusion.
Probab=40.08 E-value=1.9e+02 Score=30.09 Aligned_cols=98 Identities=19% Similarity=0.278 Sum_probs=55.0
Q ss_pred HHHHHhccCCCEEEEeCCh--HHHHHHHHHHHHcC-CeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhh
Q 006256 446 KHAVTKIRDGDVLLTYGSS--SAVEMILQHAHELG-KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHE 522 (653)
Q Consensus 446 ~~a~~~I~dGdvILT~g~S--s~Ve~vL~~A~e~g-k~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~ 522 (653)
+.|+++|+||++|..=|+. ..=+.++.+..+++ +++++|-...-....| ...|...|.
T Consensus 10 ~eAv~~I~DG~ti~~gGf~~~~~P~ali~~l~r~~~~~Ltlv~~~~g~~~~g---~~~L~~~G~---------------- 70 (222)
T TIGR02429 10 AEAVSVIPDGATIMIGGFGTAGQPFELIDALIDTGAKDLTIVSNNAGNGEIG---LAALLKAGQ---------------- 70 (222)
T ss_pred HHHHhhCCCCCEEEECCcCCccCcHHHHHHHHhcCCCCcEEEecCCCCCCcc---HHHHHhCCC----------------
Confidence 3456689999999988864 22234455555566 5588886443222122 234444442
Q ss_pred ccEEEEcc---------eeEecCCCe---ecccchHHHHHHHhhCCCCeeee
Q 006256 523 VTRVFLGA---------SSVLSNGTV---CSRVGTACVAMVAYGFHIPVLVC 562 (653)
Q Consensus 523 Vd~VllGA---------daIlaNG~V---~NKiGT~~lAl~Ak~~~VPVyV~ 562 (653)
|.+++.|- ...+.+|.+ ...-||..-.+-|-..|+|++..
T Consensus 71 Vkr~i~s~~~~~~~~~~~~~~~~g~ie~~~~p~g~l~~~lrA~a~G~P~~~t 122 (222)
T TIGR02429 71 VRKLICSFPRQSDSYVFDELYRAGKIELELVPQGTLAERIRAAGAGLGAFFT 122 (222)
T ss_pred EeEEEccccCCCCCHHHHHHHHcCCeEEEECCHHHHHHHHHHHHCCCCceee
Confidence 22222220 011112222 23678899999999999998764
No 203
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=40.00 E-value=3.6e+02 Score=26.12 Aligned_cols=45 Identities=9% Similarity=-0.092 Sum_probs=33.1
Q ss_pred EeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEc
Q 006256 485 IVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLG 529 (653)
Q Consensus 485 V~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllG 529 (653)
+.-|.--.+=.++++.+.+.|+++..|+++.-+.+-+.+|.+|.-
T Consensus 108 iS~SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~La~~aD~~l~~ 152 (177)
T cd05006 108 ISTSGNSPNVLKALEAAKERGMKTIALTGRDGGKLLELADIEIHV 152 (177)
T ss_pred EeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEEe
Confidence 333444445567778889999999999988777777778887754
No 204
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=40.00 E-value=1.3e+02 Score=30.58 Aligned_cols=80 Identities=19% Similarity=0.239 Sum_probs=49.7
Q ss_pred EEEEeCCCCCchHHHHHHHHHhCCCCEEEEccch-----HHHHhhhccEEEEc-ceeEecCCCeecccch-HHHHHHHhh
Q 006256 482 RVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA-----ISYIIHEVTRVFLG-ASSVLSNGTVCSRVGT-ACVAMVAYG 554 (653)
Q Consensus 482 ~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsA-----v~~iM~~Vd~VllG-AdaIlaNG~V~NKiGT-~~lAl~Ak~ 554 (653)
+|+|++..+.+.+. +...|.+.|+.+.++.... ...++.+.|.+|++ -. |+ ..+.+. ..+.--|..
T Consensus 2 ~ilv~d~~~~~~~~-~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp-----~~-~~~~~~~~~~i~~~~~ 74 (214)
T PRK07765 2 RILVVDNYDSFVFN-LVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGP-----GT-PERAGASIDMVRACAA 74 (214)
T ss_pred eEEEEECCCcHHHH-HHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCC-----CC-hhhcchHHHHHHHHHh
Confidence 67888888866664 6788899999999886543 12224468888773 21 22 122332 123334455
Q ss_pred CCCCeeeecccccc
Q 006256 555 FHIPVLVCCEAYKF 568 (653)
Q Consensus 555 ~~VPVyV~aetyKf 568 (653)
+++|++-+|=-+-+
T Consensus 75 ~~~PiLGIC~G~Ql 88 (214)
T PRK07765 75 AGTPLLGVCLGHQA 88 (214)
T ss_pred CCCCEEEEccCHHH
Confidence 78999987754433
No 205
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=39.79 E-value=1.7e+02 Score=33.40 Aligned_cols=91 Identities=23% Similarity=0.279 Sum_probs=54.4
Q ss_pred ccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcce
Q 006256 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGAS 531 (653)
Q Consensus 452 I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAd 531 (653)
+..|..|+.+|.+..=...++.++..| .+|++.|.++. + ...|.+.|+.+....+ . ...+..+|.||+..
T Consensus 9 ~~~~~~v~V~G~G~sG~aa~~~L~~~G--~~v~~~D~~~~----~-~~~l~~~g~~~~~~~~-~-~~~l~~~D~VV~Sp- 78 (488)
T PRK03369 9 LLPGAPVLVAGAGVTGRAVLAALTRFG--ARPTVCDDDPD----A-LRPHAERGVATVSTSD-A-VQQIADYALVVTSP- 78 (488)
T ss_pred ccCCCeEEEEcCCHHHHHHHHHHHHCC--CEEEEEcCCHH----H-HHHHHhCCCEEEcCcc-h-HhHhhcCCEEEECC-
Confidence 346789999998754334445555555 47888997653 1 3346777885532212 2 22346678776643
Q ss_pred eEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 532 SVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 532 aIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
| + .. +..+-..|++.+|||+-
T Consensus 79 -----G-i-~~--~~p~~~~a~~~gi~v~~ 99 (488)
T PRK03369 79 -----G-F-RP--TAPVLAAAAAAGVPIWG 99 (488)
T ss_pred -----C-C-CC--CCHHHHHHHHCCCcEee
Confidence 2 1 11 34566778888999884
No 206
>PRK08462 biotin carboxylase; Validated
Probab=39.62 E-value=55 Score=36.58 Aligned_cols=80 Identities=18% Similarity=0.159 Sum_probs=45.8
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCc--hHHHHHHHHHhCCCC---EEEEccchHHHHhh--hccEEEE
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKH--EGKLLLRRLVRKGLS---CTYTHINAISYIIH--EVTRVFL 528 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~--EG~~La~eL~~~GI~---vT~I~DsAv~~iM~--~Vd~Vll 528 (653)
..||..+.|..-..+++.|.+.|. +|+++.+.+.. .+..++-+....|-. -.|+....+-.+.+ ++|.|+-
T Consensus 5 k~ili~~~g~~~~~~~~~~~~~G~--~~v~~~~~~d~~~~~~~~ad~~~~~~~~~~~~~y~~~~~l~~~~~~~~~D~i~p 82 (445)
T PRK08462 5 KRILIANRGEIALRAIRTIQEMGK--EAIAIYSTADKDALYLKYADAKICIGGAKSSESYLNIPAIISAAEIFEADAIFP 82 (445)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCC--CEEEEechhhcCCchhhhCCEEEEeCCCchhcccCCHHHHHHHHHHcCCCEEEE
Confidence 479999999866689999998775 46666554433 444444221111111 13332233444333 6899998
Q ss_pred cceeEecCC
Q 006256 529 GASSVLSNG 537 (653)
Q Consensus 529 GAdaIlaNG 537 (653)
|.+.+..|.
T Consensus 83 g~g~lse~~ 91 (445)
T PRK08462 83 GYGFLSENQ 91 (445)
T ss_pred CCCccccCH
Confidence 876544443
No 207
>cd08769 DAP_dppA_2 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=39.37 E-value=60 Score=34.72 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=29.0
Q ss_pred eeEecCCCeecccchHHHHHHHhhCCCCeeeeccccccccc
Q 006256 531 SSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHER 571 (653)
Q Consensus 531 daIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~ 571 (653)
..|.-||-.++-.|- -|++|-+|||||+.++...+++..
T Consensus 124 ~~v~iNG~~~gE~~l--Na~~Ag~~gVPV~lVsGDd~~~~e 162 (270)
T cd08769 124 YNIWINGKEMNETLI--NAAYAGEFGVPVVLVAGDSELEKE 162 (270)
T ss_pred EEEEECCEEcCHHHH--HHHHHhhcCCCEEEEecCHHHHHH
Confidence 445556666666554 678999999999999887777654
No 208
>PRK13937 phosphoheptose isomerase; Provisional
Probab=39.29 E-value=3.9e+02 Score=26.41 Aligned_cols=36 Identities=6% Similarity=-0.066 Sum_probs=25.8
Q ss_pred hHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEE
Q 006256 493 EGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFL 528 (653)
Q Consensus 493 EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~Vll 528 (653)
+=.+.++.+.+.|+++..|+.+.-+.+.+.+|.+|.
T Consensus 121 ~~~~~~~~ak~~g~~~I~iT~~~~s~L~~~ad~~l~ 156 (188)
T PRK13937 121 NVLAALEKARELGMKTIGLTGRDGGKMKELCDHLLI 156 (188)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEE
Confidence 334556777888888888887776777677777765
No 209
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=39.18 E-value=4.4e+02 Score=26.93 Aligned_cols=97 Identities=16% Similarity=0.190 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHH---cCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcceeEecCCCee
Q 006256 464 SSAVEMILQHAHE---LGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVC 540 (653)
Q Consensus 464 Ss~Ve~vL~~A~e---~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAdaIlaNG~V~ 540 (653)
+...+.++..|+. .+.++-|=|.=+. +|.+..++|.+.||+|...+.-.+...+- ..-.||+-|...=+-+
T Consensus 60 ~~~~e~~i~~a~~l~~~~~~~~iKIP~T~---~gl~ai~~L~~~gi~v~~T~V~s~~Qa~~---Aa~AGA~yvsP~vgR~ 133 (211)
T cd00956 60 STDAEGMVAEARKLASLGGNVVVKIPVTE---DGLKAIKKLSEEGIKTNVTAIFSAAQALL---AAKAGATYVSPFVGRI 133 (211)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEEcCcH---hHHHHHHHHHHcCCceeeEEecCHHHHHH---HHHcCCCEEEEecChH
Confidence 3344455555543 2233333233333 89999999999999987665433333322 1222555555433222
Q ss_pred cccchH------HHHHHHhhCCCCeeeecccc
Q 006256 541 SRVGTA------CVAMVAYGFHIPVLVCCEAY 566 (653)
Q Consensus 541 NKiGT~------~lAl~Ak~~~VPVyV~aety 566 (653)
...|-- .+.-+++.++.+.=|++.++
T Consensus 134 ~~~g~dg~~~i~~i~~~~~~~~~~tkil~As~ 165 (211)
T cd00956 134 DDLGGDGMELIREIRTIFDNYGFDTKILAASI 165 (211)
T ss_pred hhcCCCHHHHHHHHHHHHHHcCCCceEEeccc
Confidence 223322 23335556777777777665
No 210
>CHL00194 ycf39 Ycf39; Provisional
Probab=39.07 E-value=1.2e+02 Score=32.10 Aligned_cols=102 Identities=17% Similarity=0.144 Sum_probs=58.3
Q ss_pred EEEEeCChHHHHH-HHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEE--cc-chHHHHhhhccEEEEccee
Q 006256 457 VLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT--HI-NAISYIIHEVTRVFLGASS 532 (653)
Q Consensus 457 vILT~g~Ss~Ve~-vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I--~D-sAv~~iM~~Vd~VllGAda 532 (653)
+||..|-+..+.. +++.+.++|. +|+++.-.+. . +..|...|+.+... .| ..+..++..+|.||--+..
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~--~V~~l~R~~~----~-~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~~ 74 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGY--QVRCLVRNLR----K-ASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDASTS 74 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCC--eEEEEEcChH----H-hhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCCC
Confidence 5777776555543 3445555564 5555532221 1 23444557665442 22 3466677889988864432
Q ss_pred EecCCC---eecccchHHHHHHHhhCCCCeeeeccc
Q 006256 533 VLSNGT---VCSRVGTACVAMVAYGFHIPVLVCCEA 565 (653)
Q Consensus 533 IlaNG~---V~NKiGT~~lAl~Ak~~~VPVyV~aet 565 (653)
...+.. -+|..|+..+.-+|++++|.-+|...+
T Consensus 75 ~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss 110 (317)
T CHL00194 75 RPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSI 110 (317)
T ss_pred CCCCccchhhhhHHHHHHHHHHHHHcCCCEEEEecc
Confidence 222211 135678888999999999976666444
No 211
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=38.98 E-value=2.1e+02 Score=27.53 Aligned_cols=86 Identities=13% Similarity=0.081 Sum_probs=52.0
Q ss_pred HHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhC-CCCEEEEcc------chHHHHhh--hccEEEEcceeEecCCCe
Q 006256 469 MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRK-GLSCTYTHI------NAISYIIH--EVTRVFLGASSVLSNGTV 539 (653)
Q Consensus 469 ~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~-GI~vT~I~D------sAv~~iM~--~Vd~VllGAdaIlaNG~V 539 (653)
.+++...+.=..|++|.+++ .++.|.+. ||+|+.+.. ..+..+++ ++++||-=.|- +|.-
T Consensus 21 ~~a~~l~~ll~Gf~l~AT~g--------Ta~~L~~~~Gi~v~~vi~~~~gg~~~i~~~I~~g~i~lVInt~dp---~~~~ 89 (142)
T PRK05234 21 AWVKAHKDLLEQHELYATGT--------TGGLIQEATGLDVTRLLSGPLGGDQQIGALIAEGKIDMLIFFRDP---LTAQ 89 (142)
T ss_pred HHHHHHHHHhcCCEEEEeCh--------HHHHHHhccCCeeEEEEcCCCCCchhHHHHHHcCceeEEEEecCC---CCCC
Confidence 55555544412478887765 46778888 999987631 22444443 78988653321 1222
Q ss_pred ecccchHHHHHHHhhCCCCeeeeccc
Q 006256 540 CSRVGTACVAMVAYGFHIPVLVCCEA 565 (653)
Q Consensus 540 ~NKiGT~~lAl~Ak~~~VPVyV~aet 565 (653)
......+.+=-+|-.||||++-.-.+
T Consensus 90 ~~~~D~~~IRR~Av~~~IP~~T~l~t 115 (142)
T PRK05234 90 PHDPDVKALLRLADVWNIPVATNRAT 115 (142)
T ss_pred cccchHHHHHHHHHHcCCCEEcCHHH
Confidence 21334567777899999999875544
No 212
>PRK08618 ornithine cyclodeaminase; Validated
Probab=38.84 E-value=2.5e+02 Score=30.34 Aligned_cols=90 Identities=16% Similarity=0.126 Sum_probs=53.3
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHh-CCCCEEEEccchHHHHhhhccEEEEcce-
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-KGLSCTYTHINAISYIIHEVTRVFLGAS- 531 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~-~GI~vT~I~DsAv~~iM~~Vd~VllGAd- 531 (653)
+..+|+.+|.+..-...+..+......-+|+|. +|-.....+++.+|.+ .|+++....| ...++.++|.|+...-
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~-~r~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~aDiVi~aT~s 202 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVY-SRTFEKAYAFAQEIQSKFNTEIYVVNS--ADEAIEEADIIVTVTNA 202 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEE-CCCHHHHHHHHHHHHHhcCCcEEEeCC--HHHHHhcCCEEEEccCC
Confidence 567899999987655545443322222344444 4444456777777764 4777665544 2344578999887431
Q ss_pred ------eEecCCCeecccchH
Q 006256 532 ------SVLSNGTVCSRVGTA 546 (653)
Q Consensus 532 ------aIlaNG~V~NKiGT~ 546 (653)
..+..|..++-+|++
T Consensus 203 ~~p~i~~~l~~G~hV~~iGs~ 223 (325)
T PRK08618 203 KTPVFSEKLKKGVHINAVGSF 223 (325)
T ss_pred CCcchHHhcCCCcEEEecCCC
Confidence 233566666666664
No 213
>PLN02187 rooty/superroot1
Probab=38.77 E-value=2.7e+02 Score=31.52 Aligned_cols=103 Identities=18% Similarity=0.214 Sum_probs=52.8
Q ss_pred ccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc---c-------hHHHHhh
Q 006256 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---N-------AISYIIH 521 (653)
Q Consensus 452 I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D---s-------Av~~iM~ 521 (653)
+...++++|.|.+.++..++....+.| -.|+|.+ |.+.+... .+...|+.+..+.. . .+-..+.
T Consensus 129 ~~~~~I~it~G~~~al~~~~~~l~~pG--d~Vlv~~--P~y~~y~~--~~~~~g~~~~~~~l~~~~~~~~d~~~l~~~~~ 202 (462)
T PLN02187 129 LTPEDIFLTAGCNQGIEIVFESLARPN--ANILLPR--PGFPHYDA--RAAYSGLEVRKFDLLPEKEWEIDLEGIEAIAD 202 (462)
T ss_pred CCcccEEEeCCHHHHHHHHHHHhcCCC--CEEEEeC--CCCccHHH--HHHHcCCEEEEEeCccccCCccCHHHHHHhcC
Confidence 455678899998888866666554433 3455433 66655433 23456777766532 1 1111221
Q ss_pred -hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 522 -~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
+..+|++--=. -..|.++++-=-..++-+|+.|++.+++
T Consensus 203 ~~~~~v~i~nP~-NPTG~v~s~e~l~~i~~~a~~~~i~iI~ 242 (462)
T PLN02187 203 ENTVAMVVINPN-NPCGNVYSHDHLKKVAETARKLGIMVIS 242 (462)
T ss_pred CCcEEEEEeCCC-CCCCCccCHHHHHHHHHHHHHCCCEEEE
Confidence 22233322100 1223333333334566678888876653
No 214
>PRK08175 aminotransferase; Validated
Probab=38.72 E-value=86 Score=34.19 Aligned_cols=92 Identities=14% Similarity=0.216 Sum_probs=51.5
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc-cch------HHHHhh----hcc
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-INA------ISYIIH----EVT 524 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~-DsA------v~~iM~----~Vd 524 (653)
.+|+|.|....+..++....+.|. +|++. +|.+.+..... ...|+.+.++. |.. +-..+. ++.
T Consensus 93 ~i~~t~G~~~~l~~~~~~~~~~gd--~Vlv~--~P~y~~~~~~~--~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~~ 166 (395)
T PRK08175 93 EAIVTIGSKEGLAHLMLATLDHGD--TVLVP--NPSYPIHIYGA--VIAGAQVRSVPLVEGVDFFNELERAIRESYPKPK 166 (395)
T ss_pred cEEEccCcHHHHHHHHHHhCCCCC--EEEEc--CCCCcchHHHH--HHcCCeEEEEecccCCCcHHHHHHHHhhccCCce
Confidence 588898888777555554444443 44443 66666554443 34688877764 211 112222 223
Q ss_pred EEEEcceeEecCCCeecccch-------HHHHHHHhhCCCCeee
Q 006256 525 RVFLGASSVLSNGTVCSRVGT-------ACVAMVAYGFHIPVLV 561 (653)
Q Consensus 525 ~VllGAdaIlaNG~V~NKiGT-------~~lAl~Ak~~~VPVyV 561 (653)
.|++ + ..-|..|+ ..++-+|++|++.+++
T Consensus 167 ~v~i-------~-~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~ 202 (395)
T PRK08175 167 MMIL-------G-FPSNPTAQCVELEFFEKVVALAKRYDVLVVH 202 (395)
T ss_pred EEEE-------e-CCCCCCCCCCCHHHHHHHHHHHHHcCcEEEE
Confidence 3333 2 23456664 5777789999996664
No 215
>PRK10537 voltage-gated potassium channel; Provisional
Probab=38.53 E-value=5.6e+02 Score=28.78 Aligned_cols=92 Identities=10% Similarity=0.062 Sum_probs=54.8
Q ss_pred CCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhh-----hccEEEEc
Q 006256 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIH-----EVTRVFLG 529 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~-----~Vd~VllG 529 (653)
.+.|+..|++..-..+++...++|..+. |+|.. ...+....|.++.+- |..=-..++ +++.|++-
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~~vv--VId~d-------~~~~~~~~g~~vI~G-D~td~e~L~~AgI~~A~aVI~~ 309 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQAVT--VIVPL-------GLEHRLPDDADLIPG-DSSDSAVLKKAGAARARAILAL 309 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCEE--EEECc-------hhhhhccCCCcEEEe-CCCCHHHHHhcCcccCCEEEEc
Confidence 4678889999877777777776666543 33422 113444567776544 333333333 56777664
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCC--Ceeeeccc
Q 006256 530 ASSVLSNGTVCSRVGTACVAMVAYGFHI--PVLVCCEA 565 (653)
Q Consensus 530 AdaIlaNG~V~NKiGT~~lAl~Ak~~~V--PVyV~aet 565 (653)
.+ +..-...+++.||+.+. .+++.+..
T Consensus 310 t~---------dD~~Nl~ivL~ar~l~p~~kIIa~v~~ 338 (393)
T PRK10537 310 RD---------NDADNAFVVLAAKEMSSDVKTVAAVND 338 (393)
T ss_pred CC---------ChHHHHHHHHHHHHhCCCCcEEEEECC
Confidence 43 23445678899999874 45555543
No 216
>PRK06767 methionine gamma-lyase; Provisional
Probab=38.49 E-value=2.7e+02 Score=30.61 Aligned_cols=98 Identities=13% Similarity=0.091 Sum_probs=47.5
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHHHH-HHhCCCCEEEEccc---hHHHHhh-hccEEEEc
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLLRR-LVRKGLSCTYTHIN---AISYIIH-EVTRVFLG 529 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La~e-L~~~GI~vT~I~Ds---Av~~iM~-~Vd~VllG 529 (653)
+.|++-+.+.++..+|....+.| -+|++.+ |.+.+. .+... +...|+++.++... .+-..+. +..+|++-
T Consensus 78 ~al~~~sG~~Ai~~~l~al~~~G--d~Vv~~~--~~y~~~~~~~~~~~~~~gi~~~~~~~~d~~~l~~~i~~~tklV~le 153 (386)
T PRK06767 78 EALAFGSGMAAISATLIGFLKAG--DHIICSN--GLYGCTYGFLEVLEEKFMITHSFCDMETEADIENKIRPNTKLIFVE 153 (386)
T ss_pred cEEEECCHHHHHHHHHHHHhCCC--CEEEEcC--CcHHHHHHHHHHHHhhcCeEEEEeCCCCHHHHHHhhCcCceEEEEe
Confidence 44555444445555554444333 3555533 444332 23333 34568888776322 2222222 34445442
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 530 AdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
.---..|.+.. -..++-+|++++++|+|
T Consensus 154 -sp~NptG~v~d---l~~I~~la~~~g~~viv 181 (386)
T PRK06767 154 -TPINPTMKLID---LKQVIRVAKRNGLLVIV 181 (386)
T ss_pred -CCCCCCceecC---HHHHHHHHHHcCCEEEE
Confidence 11112343333 24677788999987765
No 217
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=38.38 E-value=1.4e+02 Score=32.31 Aligned_cols=103 Identities=16% Similarity=0.128 Sum_probs=70.6
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcceeEec
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLS 535 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAdaIla 535 (653)
|.-+.|=...-+...+.+|.+.+.+.-|+++|.=|...=.++.+++.+.| +++|=-|.-+.+.+...++=+=...|+.
T Consensus 67 ~~svI~Vp~~~aadai~EAida~i~liv~ITEgIP~~D~~~~~~~a~~~g--~~iiGPncpGiI~Pg~~kiGimp~~i~~ 144 (293)
T COG0074 67 NASVIFVPPPFAADAILEAIDAGIKLVVIITEGIPVLDMLELKRYAREKG--TRLIGPNCPGIITPGECKIGIMPGNIYK 144 (293)
T ss_pred CEEEEecCcHHHHHHHHHHHhCCCcEEEEEeCCCCHHHHHHHHHHHHhcC--CEEECCCCCccCcCCcceeeechhhhcc
Confidence 44445545554556677888889999999999999999999999999998 6777777878777764332221256666
Q ss_pred CCC--eecccchHH--HHHHHhhCCCCee
Q 006256 536 NGT--VCSRVGTAC--VAMVAYGFHIPVL 560 (653)
Q Consensus 536 NG~--V~NKiGT~~--lAl~Ak~~~VPVy 560 (653)
-|. +++|.||+. ++--=.+.+.=++
T Consensus 145 ~G~IGiVSrSGTLTyE~~~qlt~~G~GqS 173 (293)
T COG0074 145 PGNIGIVSRSGTLTYEAVSQLTEAGLGQS 173 (293)
T ss_pred CCceEEEecCcchHHHHHHHHHhcCCceE
Confidence 775 578888654 4443344444444
No 218
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=38.36 E-value=2.1e+02 Score=32.20 Aligned_cols=98 Identities=23% Similarity=0.299 Sum_probs=51.7
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchH-HHHH-HHHHhCCCCEEEEcc---chHHHHhh-hccEEEEc
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEG-KLLL-RRLVRKGLSCTYTHI---NAISYIIH-EVTRVFLG 529 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG-~~La-~eL~~~GI~vT~I~D---sAv~~iM~-~Vd~VllG 529 (653)
..++|-+-+.++..+|....+.|. +|++.+ +.+.| ..+. ..|...|+.++++.- ..+...+. ++.+|++
T Consensus 75 ~~l~~ssG~~Ai~~al~al~~~Gd--~Vl~~~--~~Y~~t~~~~~~~l~~~gi~v~~~d~~d~e~le~ai~~~tklV~l- 149 (425)
T PRK06084 75 GALAVASGMAAITYAIQTIAEAGD--NIVSVA--KLYGGTYNLLAHTLPRIGIETRFAAHDDIAALEALIDERTKAVFC- 149 (425)
T ss_pred ceeEehhHHHHHHHHHHHHhCCCC--EEEEeC--CCcchHHHHHHHhcccceeEEEEECCCCHHHHHHHhccCCcEEEE-
Confidence 344443334466555655554443 455543 34443 2333 334456888887742 23444443 4555655
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 530 AdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
..---..|.++. -..++-+|+.|+++|+|
T Consensus 150 esp~NPtG~v~d---l~~I~~la~~~~i~vVv 178 (425)
T PRK06084 150 ESIGNPAGNIID---IQALADAAHRHGVPLIV 178 (425)
T ss_pred eCCCCCCCeecC---HHHHHHHHHHcCCEEEE
Confidence 211133444443 36677789999987765
No 219
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=37.90 E-value=1.3e+02 Score=34.22 Aligned_cols=71 Identities=17% Similarity=0.260 Sum_probs=54.8
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcce
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGAS 531 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAd 531 (653)
.+..||.+|.|...+.+.++.++.|. +.+.+=.|-+.-..+|+++|. ..++..+-+..++.++|.||.+..
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~g~--~~i~IaNRT~erA~~La~~~~-----~~~~~l~el~~~l~~~DvVissTs 247 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEKGV--KKITIANRTLERAEELAKKLG-----AEAVALEELLEALAEADVVISSTS 247 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHhCCC--CEEEEEcCCHHHHHHHHHHhC-----CeeecHHHHHHhhhhCCEEEEecC
Confidence 46789999999988788888876554 444455777777788887776 677888888888889999988753
No 220
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=37.88 E-value=3.2e+02 Score=28.55 Aligned_cols=97 Identities=18% Similarity=0.149 Sum_probs=52.4
Q ss_pred CEE-EEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc--------------chHHHHh
Q 006256 456 DVL-LTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------------NAISYII 520 (653)
Q Consensus 456 dvI-LT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D--------------sAv~~iM 520 (653)
.++ +|-|.+..+..+|..+... .-+|++. ||.+....-+ +...|+.+.++.. ..+-..+
T Consensus 76 ~~~~~~~Gst~a~~~~l~al~~~--gd~Vlv~--~~~h~s~~~~--~~~~g~~~~~v~~~~~~~~~~~~~i~~~~l~~~l 149 (294)
T cd00615 76 HTFFLVNGTSSSNKAVILAVCGP--GDKILID--RNCHKSVING--LVLSGAVPVYLKPERNPYYGIAGGIPPETFKKAL 149 (294)
T ss_pred CEEEEcCcHHHHHHHHHHHcCCC--CCEEEEe--CCchHHHHHH--HHHCCCEEEEecCccCcccCcCCCCCHHHHHHHH
Confidence 344 4666555665555555433 3355554 4555443322 3346776666521 1233334
Q ss_pred h---hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeec
Q 006256 521 H---EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (653)
Q Consensus 521 ~---~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~a 563 (653)
. ++..|++-.. ...|.++. --.++-+|+.|+++++|=.
T Consensus 150 ~~~~~~k~v~l~~p--~~~G~~~d---l~~I~~~~~~~g~~livDe 190 (294)
T cd00615 150 IEHPDAKAAVITNP--TYYGICYN---LRKIVEEAHHRGLPVLVDE 190 (294)
T ss_pred HhCCCceEEEEECC--CCCCEecC---HHHHHHHHHhcCCeEEEEC
Confidence 2 3556666432 23565554 3468888999999888743
No 221
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=37.86 E-value=1.9e+02 Score=26.82 Aligned_cols=97 Identities=18% Similarity=0.188 Sum_probs=54.6
Q ss_pred EEEeCChHHHHHHHHHHHHcCCeeEEEEeCCC---------C-Cc----hHH----HHHHHHHhC--CCCEEEEccc---
Q 006256 458 LLTYGSSSAVEMILQHAHELGKQFRVVIVDSR---------P-KH----EGK----LLLRRLVRK--GLSCTYTHIN--- 514 (653)
Q Consensus 458 ILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESR---------P-~~----EG~----~La~eL~~~--GI~vT~I~Ds--- 514 (653)
|+..|.+.+=..+++.+...|.. ++.++|.. - +. -|+ .+++.|.+. +++++.+...
T Consensus 2 VliiG~GglGs~ia~~L~~~Gv~-~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~ 80 (143)
T cd01483 2 VLLVGLGGLGSEIALNLARSGVG-KITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred EEEECCCHHHHHHHHHHHHCCCC-EEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence 66677665444455555555653 33333322 1 11 122 123444443 4555555432
Q ss_pred -hHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeecc
Q 006256 515 -AISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCE 564 (653)
Q Consensus 515 -Av~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~ae 564 (653)
....++.+.|.||.+.|.. --...+.-.|+.+++||+.+.-
T Consensus 81 ~~~~~~~~~~diVi~~~d~~---------~~~~~l~~~~~~~~i~~i~~~~ 122 (143)
T cd01483 81 DNLDDFLDGVDLVIDAIDNI---------AVRRALNRACKELGIPVIDAGG 122 (143)
T ss_pred hhHHHHhcCCCEEEECCCCH---------HHHHHHHHHHHHcCCCEEEEcC
Confidence 2234567889888877652 2356677889999999998764
No 222
>PRK06836 aspartate aminotransferase; Provisional
Probab=37.54 E-value=2.7e+02 Score=30.33 Aligned_cols=55 Identities=15% Similarity=0.195 Sum_probs=34.1
Q ss_pred ccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc
Q 006256 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (653)
Q Consensus 452 I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~ 512 (653)
+....+|+|.|.+..+..++....+.| -.|++.+ |.+.+.. ..+...|+++.++.
T Consensus 94 ~~~~~i~~t~G~~~al~~~~~~l~~~g--d~Vli~~--p~~~~~~--~~~~~~g~~v~~v~ 148 (394)
T PRK06836 94 LTADHIVMTCGAAGALNVALKAILNPG--DEVIVFA--PYFVEYR--FYVDNHGGKLVVVP 148 (394)
T ss_pred CCcCcEEEeCChHHHHHHHHHHhcCCC--CEEEEcC--CCCccHH--HHHHHcCCEEEEEe
Confidence 445568888888888765555544333 3555543 7766643 23456799888874
No 223
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=37.46 E-value=71 Score=36.29 Aligned_cols=81 Identities=10% Similarity=0.050 Sum_probs=45.7
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCC--CCEEEEccchHHHHhh--hccEEEEcce
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKG--LSCTYTHINAISYIIH--EVTRVFLGAS 531 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~G--I~vT~I~DsAv~~iM~--~Vd~VllGAd 531 (653)
..||..+++..-.++++.|.+.|....++..+..+..-+.+++.+....| -.-.|+....+-.+.+ ++|.|+-|..
T Consensus 3 ~kvLi~~~geia~~ii~a~~~~Gi~~v~v~~~~d~~a~~~~~aD~~~~i~~~~~~~y~d~~~i~~~a~~~~~D~I~pg~g 82 (472)
T PRK07178 3 KKILIANRGEIAVRIVRACAEMGIRSVAIYSEADRHALHVKRADEAYSIGADPLAGYLNPRRLVNLAVETGCDALHPGYG 82 (472)
T ss_pred cEEEEECCcHHHHHHHHHHHHcCCeEEEEeCCCccCCccHhhCCEEEEcCCCchhhhcCHHHHHHHHHHHCCCEEEeCCC
Confidence 36999999998779999999877654444444433334554442211111 0112333334444443 6888887764
Q ss_pred eEecC
Q 006256 532 SVLSN 536 (653)
Q Consensus 532 aIlaN 536 (653)
-+..|
T Consensus 83 ~lse~ 87 (472)
T PRK07178 83 FLSEN 87 (472)
T ss_pred CcccC
Confidence 44444
No 224
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=37.37 E-value=83 Score=28.83 Aligned_cols=83 Identities=18% Similarity=0.211 Sum_probs=48.4
Q ss_pred EEEEeCChHHHHHHHHHHHHcC-CeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc--c-chHHHHhh--hccEEEEcc
Q 006256 457 VLLTYGSSSAVEMILQHAHELG-KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH--I-NAISYIIH--EVTRVFLGA 530 (653)
Q Consensus 457 vILT~g~Ss~Ve~vL~~A~e~g-k~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~--D-sAv~~iM~--~Vd~VllGA 530 (653)
.||.+|++-- |..|-.+..+. +.-+|||.-..|..... + .+.-+. | ..+..+.+ ++|+||+|-
T Consensus 2 kVLviGsGgR-EHAia~~l~~s~~v~~v~~aPGN~G~~~~---------~-~~~~~~~~d~~~l~~~a~~~~idlvvvGP 70 (100)
T PF02844_consen 2 KVLVIGSGGR-EHAIAWKLSQSPSVEEVYVAPGNPGTAEL---------G-KNVPIDITDPEELADFAKENKIDLVVVGP 70 (100)
T ss_dssp EEEEEESSHH-HHHHHHHHTTCTTEEEEEEEE--TTGGGT---------S-EEE-S-TT-HHHHHHHHHHTTESEEEESS
T ss_pred EEEEECCCHH-HHHHHHHHhcCCCCCEEEEeCCCHHHHhh---------c-eecCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence 5888888732 34444444333 45689998775543211 1 111111 1 23433433 699999999
Q ss_pred eeEecCCCeecccchHHHHHHHhhCCCCee
Q 006256 531 SSVLSNGTVCSRVGTACVAMVAYGFHIPVL 560 (653)
Q Consensus 531 daIlaNG~V~NKiGT~~lAl~Ak~~~VPVy 560 (653)
+.-+.+| ++=..+..|||++
T Consensus 71 E~pL~~G----------l~D~l~~~gi~vf 90 (100)
T PF02844_consen 71 EAPLVAG----------LADALRAAGIPVF 90 (100)
T ss_dssp HHHHHTT----------HHHHHHHTT-CEE
T ss_pred hHHHHHH----------HHHHHHHCCCcEE
Confidence 9999998 6667777888875
No 225
>PRK05967 cystathionine beta-lyase; Provisional
Probab=37.22 E-value=2.7e+02 Score=31.26 Aligned_cols=98 Identities=16% Similarity=0.137 Sum_probs=56.8
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHH-HH-HHHHhCCCCEEEEcc---chHHHHhh-hccEEEEc
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKL-LL-RRLVRKGLSCTYTHI---NAISYIIH-EVTRVFLG 529 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~-La-~eL~~~GI~vT~I~D---sAv~~iM~-~Vd~VllG 529 (653)
+.|+|.+-..++..++....+.|. +|++. .|.+.|-. ++ ..|...||.++++.. ..+...+. +..+|++-
T Consensus 81 ~~v~~sSG~aAi~~~l~all~~GD--~Vlv~--~~~Y~~~~~l~~~~l~~~Gi~v~~vd~~~~e~l~~al~~~TklV~le 156 (395)
T PRK05967 81 GTILVPSGLAAVTVPFLGFLSPGD--HALIV--DSVYYPTRHFCDTMLKRLGVEVEYYDPEIGAGIAKLMRPNTKVVHTE 156 (395)
T ss_pred CEEEECcHHHHHHHHHHHhcCCCC--EEEEc--cCCcHHHHHHHHHHHHhcCeEEEEeCCCCHHHHHHhcCcCceEEEEE
Confidence 567777766677666666655454 56665 56666654 44 456778999999853 23444443 34444443
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 530 AdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
.-. | -+....=-..|+-+||+++++|+|
T Consensus 157 sPs---N-P~l~v~dl~~I~~la~~~g~~vvV 184 (395)
T PRK05967 157 APG---S-NTFEMQDIPAIAEAAHRHGAIVMM 184 (395)
T ss_pred CCC---C-CCCcHHHHHHHHHHHHHhCCEEEE
Confidence 211 1 122222234577788999976665
No 226
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=37.08 E-value=1.3e+02 Score=29.68 Aligned_cols=76 Identities=22% Similarity=0.375 Sum_probs=45.8
Q ss_pred hccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH-HHHHhCCC--CEEEEccchHHHHh---hhcc
Q 006256 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RRLVRKGL--SCTYTHINAISYII---HEVT 524 (653)
Q Consensus 451 ~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La-~eL~~~GI--~vT~I~DsAv~~iM---~~Vd 524 (653)
-+..|++||-+|.++-... +..|...+..-+|+.+|-.|.. .+++ +.+...|+ +++++...+..++. ...|
T Consensus 37 ~~~~~~~vlDlG~GtG~~s-~~~a~~~~~~~~v~avD~~~~~--~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D 113 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVT-VEASLLVGETGKVYAVDKDEKA--INLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFD 113 (198)
T ss_pred CCCCcCEEEEeCCcCCHHH-HHHHHHhCCCCEEEEEECCHHH--HHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCC
Confidence 3568899999999873311 2222233555689999998763 4445 34555674 57777655543322 2466
Q ss_pred EEEEc
Q 006256 525 RVFLG 529 (653)
Q Consensus 525 ~VllG 529 (653)
.||+|
T Consensus 114 ~V~~~ 118 (198)
T PRK00377 114 RIFIG 118 (198)
T ss_pred EEEEC
Confidence 66664
No 227
>PF02595 Gly_kinase: Glycerate kinase family; InterPro: IPR004381 This family includes glycerate kinase 2 (2.7.1.31 from EC), which catalyses the phosphorylation of (R)-glycerate to 3-phospho-(R)-glycerate in the presence of ATP. These proteins consist of two different alpha/beta domains: domain 1 has a flavodoxin-like fold, while domain 2 has a restriction enzyme-like fold (domain 2 is inserted into domain 1).; GO: 0008887 glycerate kinase activity, 0031388 organic acid phosphorylation; PDB: 3CWC_B 1TO6_A.
Probab=36.89 E-value=17 Score=40.47 Aligned_cols=64 Identities=16% Similarity=0.173 Sum_probs=38.3
Q ss_pred chHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeeccccccc
Q 006256 492 HEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFH 569 (653)
Q Consensus 492 ~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~aetyKf~ 569 (653)
..|.++.-++.. +--.+..+|+||.|--++- .....--....||-+|+.|+|||+++|.....+
T Consensus 266 ~sG~~~v~~~~~------------l~~~l~~aDlVITGEG~~D--~Qtl~GK~p~~Va~~A~~~~vPviav~G~~~~~ 329 (377)
T PF02595_consen 266 VSGIDLVLELLG------------LEERLEDADLVITGEGRLD--AQTLAGKVPGGVARLAKKHGVPVIAVAGSVDLD 329 (377)
T ss_dssp EEHHHHHHHHTT------------HHHHCCC-SEEEE--CECS--TTTTTTCHHHHHHCCHCCTT--EEEEECEC-TT
T ss_pred CchHHHHHHhcC------------HHHHhcCCCEEEECccccc--cccCCCcHHHHHHHHHHHcCCcEEEEeCCCCCC
Confidence 357776655532 3455678999999976642 223333345667888999999999999975443
No 228
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=36.85 E-value=2.7e+02 Score=25.89 Aligned_cols=47 Identities=9% Similarity=0.216 Sum_probs=27.3
Q ss_pred EEEEeCChHHHHHHHHHHHHcC-CeeEEEEeCCCCCchHHHHHHHHHh
Q 006256 457 VLLTYGSSSAVEMILQHAHELG-KQFRVVIVDSRPKHEGKLLLRRLVR 503 (653)
Q Consensus 457 vILT~g~Ss~Ve~vL~~A~e~g-k~f~ViV~ESRP~~EG~~La~eL~~ 503 (653)
+|.||.....++.+|....++. ..|.|+|+|...-.+-.+.++++..
T Consensus 3 vi~~~n~~~~l~~~l~sl~~q~~~~~evivvDd~s~d~~~~~~~~~~~ 50 (202)
T cd06433 3 ITPTYNQAETLEETIDSVLSQTYPNIEYIVIDGGSTDGTVDIIKKYED 50 (202)
T ss_pred EEeccchHHHHHHHHHHHHhCCCCCceEEEEeCCCCccHHHHHHHhHh
Confidence 3456665666667676665543 3477777765554555555555544
No 229
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=36.57 E-value=4e+02 Score=27.85 Aligned_cols=93 Identities=13% Similarity=0.046 Sum_probs=43.7
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc---hHHHHhhhc----cEEEE
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---AISYIIHEV----TRVFL 528 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds---Av~~iM~~V----d~Vll 528 (653)
+.|++.+.+..+..+|..+.+.| -.|++. .|.+...... +...|+++..+... .+-..+..- .++++
T Consensus 78 ~~i~~~~G~~~~~~~l~~~~~~g--d~v~~~--~~~~~~~~~~--~~~~g~~~~~~~~~d~~~l~~~~~~~~~~~~~~v~ 151 (360)
T TIGR00858 78 AALLFSSGYLANVGVISALVGKG--DLILSD--ALNHASLIDG--CRLSGARVRRYRHNDVEHLERLLEKNRGERRKLIV 151 (360)
T ss_pred CEEEECchHHHHHHHHHHhCCCC--CEEEEE--ccccHHHHHH--HHhcCCceEEecCCCHHHHHHHHHHcccCCCeEEE
Confidence 34444443554444454443323 244443 3554433322 33457777766422 233333321 23333
Q ss_pred cceeEecCCCeecccc----hHHHHHHHhhCCCCeee
Q 006256 529 GASSVLSNGTVCSRVG----TACVAMVAYGFHIPVLV 561 (653)
Q Consensus 529 GAdaIlaNG~V~NKiG----T~~lAl~Ak~~~VPVyV 561 (653)
-+.+.|..| -..|+-+|+.|++.+++
T Consensus 152 -------~~~~~~~~G~~~~~~~i~~l~~~~~~~li~ 181 (360)
T TIGR00858 152 -------TDGVFSMDGDIAPLPQLVALAERYGAWLMV 181 (360)
T ss_pred -------EeCCccCCCCCcCHHHHHHHHHHcCcEEEE
Confidence 123344444 24566788899976665
No 230
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=36.22 E-value=3.2e+02 Score=29.29 Aligned_cols=96 Identities=16% Similarity=0.173 Sum_probs=44.0
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc---cchHHHHhhh----ccEEEE
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH---INAISYIIHE----VTRVFL 528 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~---DsAv~~iM~~----Vd~Vll 528 (653)
+.|++.+.+.+...++..+.+.|. .|++ + .|.+.+......+ .|+++..+. ...+-..+.+ -+++|+
T Consensus 95 ~~i~~~sG~~a~~~a~~~~~~~gd--~vi~-~-~~~~~~~~~~~~~--~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~v~ 168 (385)
T TIGR01825 95 AALVFQSGFNTNQGVLSALLRKGD--IVLS-D-ELNHASIIDGLRL--TKATKKIYKHADMDDLDRVLRENPSYGKKLIV 168 (385)
T ss_pred cEEEECcHHHHHHHHHHHhCCCCC--EEEE-E-ccccHHHHHHHHh--cCCceEEeCCCCHHHHHHHHHhhccCCCeEEE
Confidence 334444445565555555544343 4443 3 3666554333333 466654442 1223333332 133333
Q ss_pred cceeEecC-CCeecccchHHHHHHHhhCCCCeee
Q 006256 529 GASSVLSN-GTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 529 GAdaIlaN-G~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
...+... |.+. . -..++-+|+.|++.+++
T Consensus 169 -~~~v~~~tG~~~-~--~~~i~~l~~~~~~~li~ 198 (385)
T TIGR01825 169 -TDGVFSMDGDVA-P--LPEIVELAERYGAVTYV 198 (385)
T ss_pred -EecCCcCCCCcc-C--HHHHHHHHHHhCCEEEE
Confidence 1122222 2222 2 24577789999986664
No 231
>PRK06348 aspartate aminotransferase; Provisional
Probab=36.20 E-value=2.6e+02 Score=30.40 Aligned_cols=95 Identities=15% Similarity=0.221 Sum_probs=52.0
Q ss_pred ccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc---c-------chHHHHhh
Q 006256 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH---I-------NAISYIIH 521 (653)
Q Consensus 452 I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~---D-------sAv~~iM~ 521 (653)
+...++++|.|.+.++..++....+.|. +|+|. .|.+.+...+.+ ..|..+..+. + ..+-..+.
T Consensus 87 ~~~~~i~it~G~~~al~~~~~~~~~~gd--~vlv~--~p~y~~~~~~~~--~~g~~~~~~~~~~~~~~~~d~~~l~~~~~ 160 (384)
T PRK06348 87 FKRNEIMATVGACHGMYLALQSILDPGD--EVIIH--EPYFTPYKDQIE--MVGGKPIILETYEEDGFQINVKKLEALIT 160 (384)
T ss_pred CChhhEEEcCChHHHHHHHHHHhcCCCC--EEEEe--CCCCcchHHHHH--HcCCEEEEecCCcCcCCcCCHHHHHHhhC
Confidence 4455788999988888666655544443 55553 477766554433 3465555553 1 12222222
Q ss_pred -hccEEEEcceeEecCCCeecccch-------HHHHHHHhhCCCCee
Q 006256 522 -EVTRVFLGASSVLSNGTVCSRVGT-------ACVAMVAYGFHIPVL 560 (653)
Q Consensus 522 -~Vd~VllGAdaIlaNG~V~NKiGT-------~~lAl~Ak~~~VPVy 560 (653)
++..|++- ..-|..|. ..++-+|++|++.++
T Consensus 161 ~~~~~v~l~--------~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii 199 (384)
T PRK06348 161 SKTKAIILN--------SPNNPTGAVFSKETLEEIAKIAIEYDLFII 199 (384)
T ss_pred cCccEEEEe--------CCCCCCCcCCCHHHHHHHHHHHHHCCeEEE
Confidence 34444431 23456664 446667888887554
No 232
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=35.98 E-value=1.9e+02 Score=32.01 Aligned_cols=47 Identities=13% Similarity=0.209 Sum_probs=31.7
Q ss_pred HHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhC----CCCeeeecccccc
Q 006256 517 SYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGF----HIPVLVCCEAYKF 568 (653)
Q Consensus 517 ~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~----~VPVyV~aetyKf 568 (653)
-..+++...|| ++.++....-.|+...+.++.+. .+|+.-+|-...|
T Consensus 279 ~~~~~~~~~Iv-----vvEE~~~~GGlG~~Va~~l~e~~~~~l~~pv~ri~~~d~~ 329 (355)
T PTZ00182 279 VKSVKKTGRCV-----IVHEAPPTCGIGAEIAAQIMEDCFLYLEAPIKRVCGADTP 329 (355)
T ss_pred HHHHhcCCEEE-----EEEeCCCCCCHHHHHHHHHHHhhhhhcCCCeEEeCCCCcc
Confidence 34455666765 45677777778888888888875 6788766644334
No 233
>PRK07550 hypothetical protein; Provisional
Probab=35.97 E-value=2.5e+02 Score=30.37 Aligned_cols=102 Identities=16% Similarity=0.078 Sum_probs=52.5
Q ss_pred ccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc-------hHHHHhh---
Q 006256 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-------AISYIIH--- 521 (653)
Q Consensus 452 I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds-------Av~~iM~--- 521 (653)
+...++++|.|.+.++..++....+.| -+|+| ++ |.+-+... .+...|+++..+... .+..+-+
T Consensus 88 ~~~~~i~~t~G~~~al~~~~~~l~~~g--d~Vlv-~~-p~y~~~~~--~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~~ 161 (386)
T PRK07550 88 ISPEQVHITSGCNQAFWAAMVTLAGAG--DEVIL-PL-PWYFNHKM--WLDMLGIRPVYLPCDEGPGLLPDPAAAEALIT 161 (386)
T ss_pred CCcceEEEecCcHHHHHHHHHHhcCCC--CEEEE-cC-CCCcchHH--HHHhcCCEEEEEecCCCcCCCCCHHHHHHHhc
Confidence 444578888888777755555443333 34444 43 66655433 345678887666421 1222222
Q ss_pred -hccEEEEc-ceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 522 -EVTRVFLG-ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 522 -~Vd~VllG-AdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
+..+|++- .+ -..|.+++.-=--.++-+|++|++++++
T Consensus 162 ~~~~~v~~~~P~--NPtG~~~~~~~~~~i~~~~~~~~~~iI~ 201 (386)
T PRK07550 162 PRTRAIALVTPN--NPTGVVYPPELLHELYDLARRHGIALIL 201 (386)
T ss_pred ccCcEEEEeCCC--CCCCcccCHHHHHHHHHHHHHcCeEEEE
Confidence 23343321 10 1123333332244577788999987654
No 234
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=35.96 E-value=2.4e+02 Score=30.74 Aligned_cols=93 Identities=15% Similarity=0.096 Sum_probs=52.9
Q ss_pred CEEEEeCChHHHHHHHHHHHHc-CCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc----------hH-HHHhhhc
Q 006256 456 DVLLTYGSSSAVEMILQHAHEL-GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN----------AI-SYIIHEV 523 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~-gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds----------Av-~~iM~~V 523 (653)
.+++|.|.+.++..+++...+. |..-.|+|. .|.+.+...+ +...|+++..|... ++ ..+.+++
T Consensus 92 ~i~it~G~~~al~~~~~~l~~~~~~gd~vlv~--~P~y~~~~~~--~~~~g~~~~~vp~~~~~~~~~d~~~l~~~~~~~~ 167 (396)
T PRK09147 92 QVLPVNGSREALFAFAQTVIDRDGPGPLVVCP--NPFYQIYEGA--ALLAGAEPYFLNCDPANNFAPDFDAVPAEVWART 167 (396)
T ss_pred eEEECCChHHHHHHHHHHHcCCCCCCCEEEEc--CCCccchHHH--HHhcCCEEEEeccCccccCccCHHHHHHHHhhcc
Confidence 6788899888886666555443 223345553 6777666544 33467777776421 11 1111234
Q ss_pred cEEEEcceeEecCCCeecccch-------HHHHHHHhhCCCCee
Q 006256 524 TRVFLGASSVLSNGTVCSRVGT-------ACVAMVAYGFHIPVL 560 (653)
Q Consensus 524 d~VllGAdaIlaNG~V~NKiGT-------~~lAl~Ak~~~VPVy 560 (653)
.++++ + .--|..|+ ..++-+|+.|++.++
T Consensus 168 k~i~l-------~-nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii 203 (396)
T PRK09147 168 QLLFV-------C-SPGNPTGAVLPLDDWKKLFALSDRYGFVIA 203 (396)
T ss_pred EEEEE-------c-CCCCCcCccCCHHHHHHHHHHHHHcCeEEE
Confidence 44443 2 34577774 456667888887654
No 235
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=35.70 E-value=5.4e+02 Score=27.22 Aligned_cols=105 Identities=23% Similarity=0.235 Sum_probs=62.3
Q ss_pred CEEEEeCC---hHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEE-Eccch----HHHHhhh-ccEE
Q 006256 456 DVLLTYGS---SSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTY-THINA----ISYIIHE-VTRV 526 (653)
Q Consensus 456 dvILT~g~---Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~-I~DsA----v~~iM~~-Vd~V 526 (653)
-++|||.| ..-+++++..+.+.|-. -|+|.| -|..|..++...+.+.|+.... ++-+. +..+... -++|
T Consensus 92 ~vlm~Y~N~i~~~G~e~f~~~~~~aGvd-GviipD-Lp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfI 169 (258)
T PRK13111 92 IVLMTYYNPIFQYGVERFAADAAEAGVD-GLIIPD-LPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFV 169 (258)
T ss_pred EEEEecccHHhhcCHHHHHHHHHHcCCc-EEEECC-CCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcE
Confidence 47889876 44678899999887754 455554 4667888999999999998776 54444 2222222 2333
Q ss_pred EE-cceeEecCCCeecccchHHHHHHHhhCCCCeeee
Q 006256 527 FL-GASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (653)
Q Consensus 527 ll-GAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~ 562 (653)
-+ +--.+.....-...-....+..+.++.++|++|=
T Consensus 170 Y~vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~vG 206 (258)
T PRK13111 170 YYVSRAGVTGARSADAADLAELVARLKAHTDLPVAVG 206 (258)
T ss_pred EEEeCCCCCCcccCCCccHHHHHHHHHhcCCCcEEEE
Confidence 22 2111111101112223345667777779999873
No 236
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=35.68 E-value=2.5e+02 Score=24.22 Aligned_cols=77 Identities=19% Similarity=0.148 Sum_probs=46.1
Q ss_pred HHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEE-EEc---c--chHHHHhh--hccEEEEcceeEecCCCeec
Q 006256 470 ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCT-YTH---I--NAISYIIH--EVTRVFLGASSVLSNGTVCS 541 (653)
Q Consensus 470 vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT-~I~---D--sAv~~iM~--~Vd~VllGAdaIlaNG~V~N 541 (653)
+++..++ ..|++|.+++ .++.|.+.||+|. .+. + ..+.-.++ ++|+||.=.+. .+....
T Consensus 5 ~~~~l~~--lG~~i~AT~g--------Ta~~L~~~Gi~~~~~~~ki~~~~~~i~~~i~~g~id~VIn~~~~---~~~~~~ 71 (90)
T smart00851 5 LAKRLAE--LGFELVATGG--------TAKFLREAGLPVKTLHPKVHGGILAILDLIKNGEIDLVINTLYP---LGAQPH 71 (90)
T ss_pred HHHHHHH--CCCEEEEccH--------HHHHHHHCCCcceeccCCCCCCCHHHHHHhcCCCeEEEEECCCc---Ccceec
Confidence 3444444 3588887664 3567888999985 431 1 11333333 79999873321 133333
Q ss_pred ccchHHHHHHHhhCCCCee
Q 006256 542 RVGTACVAMVAYGFHIPVL 560 (653)
Q Consensus 542 KiGT~~lAl~Ak~~~VPVy 560 (653)
+ -.+.+=-+|-.++||++
T Consensus 72 ~-d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 72 E-DGKALRRAAENIDIPGA 89 (90)
T ss_pred c-CcHHHHHHHHHcCCCee
Confidence 3 45677778999999975
No 237
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=35.60 E-value=1.3e+02 Score=32.29 Aligned_cols=29 Identities=21% Similarity=0.167 Sum_probs=17.3
Q ss_pred CCeecccch----HHHHHHHhhCCCCeeeecccc
Q 006256 537 GTVCSRVGT----ACVAMVAYGFHIPVLVCCEAY 566 (653)
Q Consensus 537 G~V~NKiGT----~~lAl~Ak~~~VPVyV~aety 566 (653)
|.+.|..|+ -.|+-+|++|++++++ =+.|
T Consensus 181 ~~v~~~~G~~~~~~~l~~la~~~~~~li~-De~~ 213 (397)
T PRK06939 181 DGVFSMDGDIAPLPEICDLADKYDALVMV-DDSH 213 (397)
T ss_pred ecCcCCCCCcCCHHHHHHHHHHhCCEEEE-ECcc
Confidence 334555554 3466678999987754 3444
No 238
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=35.57 E-value=2.1e+02 Score=27.51 Aligned_cols=43 Identities=21% Similarity=0.262 Sum_probs=27.0
Q ss_pred CCCCchHHHHHHHHHhCCCCEEEEccc--hHHHHhhhccEEEEcc
Q 006256 488 SRPKHEGKLLLRRLVRKGLSCTYTHIN--AISYIIHEVTRVFLGA 530 (653)
Q Consensus 488 SRP~~EG~~La~eL~~~GI~vT~I~Ds--Av~~iM~~Vd~VllGA 530 (653)
.|=..-|+.|+..|.+.|..++.+... .+...++++|.|+...
T Consensus 35 Grs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~~ADIVvsAt 79 (140)
T cd05212 35 GRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVHDADVVVVGS 79 (140)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEEec
Confidence 344445667777777777766666521 2455678888887643
No 239
>PRK06108 aspartate aminotransferase; Provisional
Probab=35.56 E-value=2.9e+02 Score=29.56 Aligned_cols=96 Identities=14% Similarity=0.132 Sum_probs=51.3
Q ss_pred ccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc--------hHHHH---h
Q 006256 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN--------AISYI---I 520 (653)
Q Consensus 452 I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds--------Av~~i---M 520 (653)
+....+++|.|.+.++..++....+.| -+|++. .|.+.+.. ..+...|+++..+... -+..+ +
T Consensus 82 ~~~~~i~~t~g~~~al~~~~~~l~~~g--d~vl~~--~p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~ 155 (382)
T PRK06108 82 TPPERIAVTSSGVQALMLAAQALVGPG--DEVVAV--TPLWPNLV--AAPKILGARVVCVPLDFGGGGWTLDLDRLLAAI 155 (382)
T ss_pred cCcceEEEeCChHHHHHHHHHHhcCCC--CEEEEe--CCCccchH--HHHHHCCCEEEEeeCCCCCCCccCCHHHHHHhc
Confidence 344567888888888765555444333 345553 35554333 2345578888776431 11222 2
Q ss_pred h-hccEEEEcceeEecCCCeecccchH-------HHHHHHhhCCCCeee
Q 006256 521 H-EVTRVFLGASSVLSNGTVCSRVGTA-------CVAMVAYGFHIPVLV 561 (653)
Q Consensus 521 ~-~Vd~VllGAdaIlaNG~V~NKiGT~-------~lAl~Ak~~~VPVyV 561 (653)
. ++.+|++ + ..-|..|+. .++-+|+++++.+++
T Consensus 156 ~~~~~~i~l-------~-~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~ 196 (382)
T PRK06108 156 TPRTRALFI-------N-SPNNPTGWTASRDDLRAILAHCRRHGLWIVA 196 (382)
T ss_pred CccceEEEE-------E-CCCCCCCcccCHHHHHHHHHHHHHCCcEEEE
Confidence 1 2333333 2 234666643 366678888886653
No 240
>PRK06141 ornithine cyclodeaminase; Validated
Probab=35.34 E-value=3e+02 Score=29.57 Aligned_cols=90 Identities=17% Similarity=0.197 Sum_probs=54.4
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEccee-
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASS- 532 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAda- 532 (653)
+..+|+.+|.+..-...++.........+|+|.. |-.....+|+.++.+.|+++... ++ +.-.+.++|.|+.-..+
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~-Rs~~~a~~~a~~~~~~g~~~~~~-~~-~~~av~~aDIVi~aT~s~ 200 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWG-RDPAKAEALAAELRAQGFDAEVV-TD-LEAAVRQADIISCATLST 200 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEc-CCHHHHHHHHHHHHhcCCceEEe-CC-HHHHHhcCCEEEEeeCCC
Confidence 5678999999876545444333322234566654 54455677888887778766643 22 33455789988663321
Q ss_pred -------EecCCCeecccchH
Q 006256 533 -------VLSNGTVCSRVGTA 546 (653)
Q Consensus 533 -------IlaNG~V~NKiGT~ 546 (653)
.+..|.+++-+|++
T Consensus 201 ~pvl~~~~l~~g~~i~~ig~~ 221 (314)
T PRK06141 201 EPLVRGEWLKPGTHLDLVGNF 221 (314)
T ss_pred CCEecHHHcCCCCEEEeeCCC
Confidence 23456677766665
No 241
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=35.30 E-value=4.2e+02 Score=28.34 Aligned_cols=98 Identities=17% Similarity=0.159 Sum_probs=47.2
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc----------hHHHHhh----
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN----------AISYIIH---- 521 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds----------Av~~iM~---- 521 (653)
.+++|.|.+..+..+|....+.| -+|++. ++.+-+.. ..+...|+.+.++... .+...+.
T Consensus 61 ~i~~~~g~t~al~~~l~~~~~~g--d~Vl~~--~~~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~ 134 (361)
T cd06452 61 EARVTPGAREGKFAVMHSLCEKG--DWVVVD--GLAHYTSY--VAAERAGLNVREVPNTGHPEYHITPEGYAEVIEEVKD 134 (361)
T ss_pred eEEEeCCHHHHHHHHHHHhcCCC--CEEEEc--CCcchHHH--HHHHhcCCEEEEEecCCCCCcccCHHHHHHHHHHHhh
Confidence 56666666666655555443333 244443 23222221 2355678877776411 1222232
Q ss_pred ----hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeec
Q 006256 522 ----EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (653)
Q Consensus 522 ----~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~a 563 (653)
++.+|++. +.-...|.+ .. -..++-+|+.|+++|+|=+
T Consensus 135 ~~~~~~~lv~l~-~p~n~tG~~-~~--~~~i~~~~~~~~~~vivD~ 176 (361)
T cd06452 135 EFGKPPALALLT-HVDGNYGNL-HD--AKKIAKVCHEYGVPLLLNG 176 (361)
T ss_pred ccCCCceEEEEE-CCCCCCeee-cc--HHHHHHHHHHcCCeEEEEC
Confidence 34566653 111112222 11 2356667888898877633
No 242
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=35.28 E-value=4.9e+02 Score=28.32 Aligned_cols=96 Identities=13% Similarity=0.233 Sum_probs=50.9
Q ss_pred EEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHH-HHHHhCCCCEEEEccchHHH---Hhh-hccEEEEcc
Q 006256 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHINAISY---IIH-EVTRVFLGA 530 (653)
Q Consensus 457 vILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La-~eL~~~GI~vT~I~DsAv~~---iM~-~Vd~VllGA 530 (653)
.|+|-+...++..+ ..+...|. +|++.+ |.+.|. .+. ..+...|+.++++...-... .+. +..+|++-
T Consensus 70 ~~~~~sG~~ai~~~-~~ll~~Gd--~Vl~~~--~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~~tklv~le- 143 (366)
T PRK08247 70 GFACSSGMAAIQLV-MSLFRSGD--ELIVSS--DLYGGTYRLFEEHWKKWNVRFVYVNTASLKAIEQAITPNTKAIFIE- 143 (366)
T ss_pred EEEEcCHHHHHHHH-HHHhCCCC--EEEEec--CCcCcHHHHHHHHhhccCceEEEECCCCHHHHHHhcccCceEEEEE-
Confidence 45555555566443 34444443 566543 555553 333 45667899998885432332 222 34444441
Q ss_pred eeEecCCCeecccch----HHHHHHHhhCCCCeeeecccc
Q 006256 531 SSVLSNGTVCSRVGT----ACVAMVAYGFHIPVLVCCEAY 566 (653)
Q Consensus 531 daIlaNG~V~NKiGT----~~lAl~Ak~~~VPVyV~aety 566 (653)
...|..|+ ..++-+|+.|+++++| =++|
T Consensus 144 -------~P~NP~~~~~dl~~I~~la~~~g~~lIv-D~t~ 175 (366)
T PRK08247 144 -------TPTNPLMQETDIAAIAKIAKKHGLLLIV-DNTF 175 (366)
T ss_pred -------CCCCCCCcHHHHHHHHHHHHHcCCEEEE-ECCC
Confidence 11244443 4467788999987654 3444
No 243
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=35.22 E-value=3.8e+02 Score=29.14 Aligned_cols=101 Identities=16% Similarity=0.214 Sum_probs=54.6
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH-HHHHh----------CCCCEEEEc--c-chHHHHh-
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RRLVR----------KGLSCTYTH--I-NAISYII- 520 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La-~eL~~----------~GI~vT~I~--D-sAv~~iM- 520 (653)
.+++|.|-+.+++.+++.+...|+. +|++.|. .+-|..+. ..+.. .+.++..+. | ..+-.++
T Consensus 105 ~v~~~~sgsea~~~al~~~~~~g~~-~ii~~~~--~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~ 181 (398)
T PRK03244 105 RVFFCNSGAEANEAAFKLARLTGRT-KIVAAEG--GFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPYGDVDALAAAVD 181 (398)
T ss_pred EEEEeCchHHHHHHHHHHHHHHCCC-eEEEECC--CcCCccHHHHhccCCcccccCCCCCCCCceEeCCCCHHHHHHhhc
Confidence 5777778888998888877766653 5566553 33333221 11111 122344443 2 2333333
Q ss_pred hhccEEEEcceeEecC-CCeecccc-hHHHHHHHhhCCCCeee
Q 006256 521 HEVTRVFLGASSVLSN-GTVCSRVG-TACVAMVAYGFHIPVLV 561 (653)
Q Consensus 521 ~~Vd~VllGAdaIlaN-G~V~NKiG-T~~lAl~Ak~~~VPVyV 561 (653)
.++.+|++ +.+... |.++..-+ -..+.-+|++|++.+++
T Consensus 182 ~~~~avii--ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~ 222 (398)
T PRK03244 182 DDTAAVFL--EPIQGEAGVVPPPAGYLAAAREITDRHGALLVL 222 (398)
T ss_pred CCeEEEEE--ecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 24455555 334333 44444444 34567789999988765
No 244
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=34.96 E-value=86 Score=31.26 Aligned_cols=83 Identities=13% Similarity=0.162 Sum_probs=46.7
Q ss_pred eEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcceeEecCCCee----cccchHHHHHHHhhCC
Q 006256 481 FRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVC----SRVGTACVAMVAYGFH 556 (653)
Q Consensus 481 f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAdaIlaNG~V~----NKiGT~~lAl~Ak~~~ 556 (653)
+-|.+...-+......+.+.|...|++++++...... -+.++|.+|++-- .+... ...+....-.-+-..+
T Consensus 3 i~vl~~~~~~~e~~~~~~~~l~~~g~~~~~~~~~~~~-~l~~~d~iii~GG----~~~~~~~~~~~~~~~~~i~~~~~~~ 77 (200)
T PRK13527 3 IGVLALQGDVEEHIDALKRALDELGIDGEVVEVRRPG-DLPDCDALIIPGG----ESTTIGRLMKREGILDEIKEKIEEG 77 (200)
T ss_pred EEEEEECCccHHHHHHHHHHHHhcCCCeEEEEeCChH-HhccCCEEEECCC----cHHHHHHHHhhccHHHHHHHHHHCC
Confidence 4566666655444455567888899888776654432 3457787777532 11111 2223222222233468
Q ss_pred CCeeeecccccc
Q 006256 557 IPVLVCCEAYKF 568 (653)
Q Consensus 557 VPVyV~aetyKf 568 (653)
+|++-+|--+-+
T Consensus 78 ~pilGIC~G~Ql 89 (200)
T PRK13527 78 LPILGTCAGLIL 89 (200)
T ss_pred CeEEEECHHHHH
Confidence 999988765544
No 245
>PRK01362 putative translaldolase; Provisional
Probab=34.92 E-value=3.9e+02 Score=27.56 Aligned_cols=97 Identities=15% Similarity=0.195 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHH---cCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcceeEecCCCee
Q 006256 464 SSAVEMILQHAHE---LGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVC 540 (653)
Q Consensus 464 Ss~Ve~vL~~A~e---~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAdaIlaNG~V~ 540 (653)
+...+.++.+|++ .+.++-|=|.=|. +|.+.++.|.+.||+|..+..-++...+--+. .||+-|..-=+=+
T Consensus 60 ~~d~~~m~~~a~~l~~~~~~i~iKIP~T~---~G~~a~~~L~~~Gi~v~~T~vfs~~Qa~~Aa~---aGa~yispyvgRi 133 (214)
T PRK01362 60 ALDAEGMIKEGRELAKIAPNVVVKIPMTP---EGLKAVKALSKEGIKTNVTLIFSANQALLAAK---AGATYVSPFVGRL 133 (214)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEeCCCH---HHHHHHHHHHHCCCceEEeeecCHHHHHHHHh---cCCcEEEeecchH
Confidence 3344556666654 3444444344343 89998999999999998877655555443221 3777666532222
Q ss_pred cccchHHHHHHH------hhCCCCeeeecccc
Q 006256 541 SRVGTACVAMVA------YGFHIPVLVCCEAY 566 (653)
Q Consensus 541 NKiGT~~lAl~A------k~~~VPVyV~aety 566 (653)
+..|--.+.++. +.++.+.-|++.++
T Consensus 134 ~d~g~dg~~~i~~~~~~~~~~~~~tkilaAS~ 165 (214)
T PRK01362 134 DDIGTDGMELIEDIREIYDNYGFDTEIIAASV 165 (214)
T ss_pred hhcCCCHHHHHHHHHHHHHHcCCCcEEEEeec
Confidence 222433333322 34455555555554
No 246
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=34.75 E-value=1e+02 Score=32.26 Aligned_cols=52 Identities=19% Similarity=0.188 Sum_probs=36.1
Q ss_pred hHHHHhhhccEEEEcceeEecCCCeeccc-chHHHHHHHhhCCCCeeeecccc
Q 006256 515 AISYIIHEVTRVFLGASSVLSNGTVCSRV-GTACVAMVAYGFHIPVLVCCEAY 566 (653)
Q Consensus 515 Av~~iM~~Vd~VllGAdaIlaNG~V~NKi-GT~~lAl~Ak~~~VPVyV~aety 566 (653)
.+-..+.++|.||+|-..++.+..-.... --+.+..+|+.+++|+++++-+.
T Consensus 57 ~~~~~l~~~D~vI~gGG~l~~d~~~~~~~~~~~~~~~~a~~~~k~~~~~g~gi 109 (298)
T TIGR03609 57 AVLRALRRADVVIWGGGSLLQDVTSFRSLLYYLGLMRLARLFGKPVILWGQGI 109 (298)
T ss_pred HHHHHHHHCCEEEECCcccccCCcccccHHHHHHHHHHHHHcCCCEEEEeccc
Confidence 45556779999999998888765322111 11235678899999999987764
No 247
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=34.69 E-value=66 Score=29.75 Aligned_cols=96 Identities=17% Similarity=0.163 Sum_probs=56.4
Q ss_pred EEEEeCChHHHHHHHHHHHHcCCeeE-EEEeCCCC-CchHHHHHHHHH--hCCCCEEEEccchHHHHhhhccEEEEccee
Q 006256 457 VLLTYGSSSAVEMILQHAHELGKQFR-VVIVDSRP-KHEGKLLLRRLV--RKGLSCTYTHINAISYIIHEVTRVFLGASS 532 (653)
Q Consensus 457 vILT~g~Ss~Ve~vL~~A~e~gk~f~-ViV~ESRP-~~EG~~La~eL~--~~GI~vT~I~DsAv~~iM~~Vd~VllGAda 532 (653)
.|+.+|++--+.+.|.++..+...++ |-+++.++ -..|..+..-+. ..|++++ ..+..++.++|.||
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~----~~l~~~~~~~DVvI----- 72 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVT----DDLEELLEEADVVI----- 72 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEB----S-HHHHTTH-SEEE-----
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccc----hhHHHhcccCCEEE-----
Confidence 57888984444454555555556666 55667776 456666543222 3455444 44556666677654
Q ss_pred EecCCCeecccchHHHHHHHhhCCCCeeeecccc
Q 006256 533 VLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (653)
Q Consensus 533 IlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~aety 566 (653)
+.-+.-+++..+-.|.++++|+++.+.-|
T Consensus 73 -----DfT~p~~~~~~~~~~~~~g~~~ViGTTG~ 101 (124)
T PF01113_consen 73 -----DFTNPDAVYDNLEYALKHGVPLVIGTTGF 101 (124)
T ss_dssp -----EES-HHHHHHHHHHHHHHT-EEEEE-SSS
T ss_pred -----EcCChHHhHHHHHHHHhCCCCEEEECCCC
Confidence 23366777788888888899999987544
No 248
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=34.65 E-value=7.4e+02 Score=28.27 Aligned_cols=150 Identities=11% Similarity=0.132 Sum_probs=76.8
Q ss_pred ccccHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEeCChHHHHHHHHH
Q 006256 394 LSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQH 473 (653)
Q Consensus 394 tsVsmgNAIr~lk~~I~~~~~~~~~~eaK~~L~e~I~~fi~E~i~~a~~~Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~ 473 (653)
+-+.+.+.-++|+...+-...... +.+ ++|+. ...+.|.+....++ .|..+..+|.+..+..+-+-
T Consensus 258 ~P~G~~~T~~~l~~ia~~~g~~~~-----e~i-------~~er~-~~~~~~~~~~~~~l-~Gkrv~i~g~~~~~~~l~~f 323 (454)
T cd01973 258 TPIGIKNTDAFLQNIKELTGKPIP-----ESL-------VRERG-IAIDALADLAHMFF-ANKKVAIFGHPDLVIGLAEF 323 (454)
T ss_pred CCcChHHHHHHHHHHHHHHCCCCC-----HHH-------HHHHH-HHHHHHHHHHHHHh-CCCeEEEEcCHHHHHHHHHH
Confidence 446778887777765443322221 111 12211 12233443333333 58888888887766555555
Q ss_pred HHHcCCeeEEEEeCC-CCCchHHHHHHHHH-hCCCCEEEEccchHHHHhhhccEEEEcceeEecCCCeecccchHHHHHH
Q 006256 474 AHELGKQFRVVIVDS-RPKHEGKLLLRRLV-RKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMV 551 (653)
Q Consensus 474 A~e~gk~f~ViV~ES-RP~~EG~~La~eL~-~~GI~vT~I~DsAv~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~ 551 (653)
+.+.|-...++++-+ .+..+.....++|. ..+..+.++.+.-..-+...+..--.++|-|+.|. .---+
T Consensus 324 l~elGm~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~~~d~~e~~~~i~~~~~~~dliig~s---------~~~~~ 394 (454)
T cd01973 324 CLEVEMKPVLLLLGDDNSKYKKDPRIKALKEKADYDMEIVTNADLWELEKRIKNKGLELDLILGHS---------KGRYI 394 (454)
T ss_pred HHHCCCeEEEEEECCCCcccchhHHHHHHHhhcCCCceEEECCCHHHHHHHHHhcCCCCCEEEECC---------ccHHH
Confidence 557788876666554 44445555555663 23444444544433333221110001234444332 23467
Q ss_pred HhhCCCCeeee-cccc
Q 006256 552 AYGFHIPVLVC-CEAY 566 (653)
Q Consensus 552 Ak~~~VPVyV~-aety 566 (653)
|+..+||++.+ .|.|
T Consensus 395 A~~~gip~~~~g~Pv~ 410 (454)
T cd01973 395 AIDNNIPMVRVGFPTF 410 (454)
T ss_pred HHHcCCCEEEecCCee
Confidence 88999999876 4544
No 249
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=34.51 E-value=2.3e+02 Score=31.61 Aligned_cols=71 Identities=13% Similarity=0.098 Sum_probs=42.6
Q ss_pred EEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchH---HHHhhhccEEEEcc
Q 006256 458 LLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAI---SYIIHEVTRVFLGA 530 (653)
Q Consensus 458 ILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv---~~iM~~Vd~VllGA 530 (653)
|+.+|.+.+=....+.++++| ..|.+.|.++...=..+...|.+.||.+..-.+... .....+.|.|+++.
T Consensus 3 v~viG~G~sG~s~a~~l~~~G--~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~ 76 (459)
T PRK02705 3 AHVIGLGRSGIAAARLLKAQG--WEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSP 76 (459)
T ss_pred EEEEccCHHHHHHHHHHHHCC--CEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECC
Confidence 566665432112344455555 589999988765433444568888988865443321 23456788888844
No 250
>PRK15005 universal stress protein F; Provisional
Probab=34.49 E-value=1.1e+02 Score=27.80 Aligned_cols=36 Identities=17% Similarity=0.252 Sum_probs=21.8
Q ss_pred hccEEEEcceeEecCCCeec-ccchHHHHHHHhhCCCCeeee
Q 006256 522 EVTRVFLGASSVLSNGTVCS-RVGTACVAMVAYGFHIPVLVC 562 (653)
Q Consensus 522 ~Vd~VllGAdaIlaNG~V~N-KiGT~~lAl~Ak~~~VPVyV~ 562 (653)
++|+|++|++. +| +.. -+|+- ..-+.++..+||+|+
T Consensus 107 ~~DLIV~Gs~~---~~-~~~~llGS~-a~~vl~~a~cpVlvV 143 (144)
T PRK15005 107 PADMIIIASHR---PD-ITTYLLGSN-AAAVVRHAECSVLVV 143 (144)
T ss_pred CCCEEEEeCCC---CC-chheeecch-HHHHHHhCCCCEEEe
Confidence 58888888763 22 222 23553 334566777888875
No 251
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=34.42 E-value=4.5e+02 Score=28.79 Aligned_cols=109 Identities=16% Similarity=0.123 Sum_probs=64.2
Q ss_pred HHHHHHHhccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCC----------Cc------hH----HHHHHHHHh
Q 006256 444 IVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRP----------KH------EG----KLLLRRLVR 503 (653)
Q Consensus 444 Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP----------~~------EG----~~La~eL~~ 503 (653)
|+..+.++|. ...||..|.+.+=..++..+...|.. ++.++|..- ++ .| ..+.+.|.+
T Consensus 14 ~G~~~Q~~L~-~~~VlVvG~GglGs~va~~La~aGvg-~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~ 91 (339)
T PRK07688 14 IGEEGQQKLR-EKHVLIIGAGALGTANAEMLVRAGVG-KVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEE 91 (339)
T ss_pred cCHHHHHHhc-CCcEEEECCCHHHHHHHHHHHHcCCC-eEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHH
Confidence 5667777775 46788888875433444555555765 444444321 00 01 111245554
Q ss_pred C--CCCEEEEc----cchHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeec
Q 006256 504 K--GLSCTYTH----INAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (653)
Q Consensus 504 ~--GI~vT~I~----DsAv~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~a 563 (653)
. .|.++.+. ...+..++.++|.||.+.|.. ---+.+.-+|..+++|++.++
T Consensus 92 inp~v~v~~~~~~~~~~~~~~~~~~~DlVid~~Dn~---------~~r~~ln~~~~~~~iP~i~~~ 148 (339)
T PRK07688 92 INSDVRVEAIVQDVTAEELEELVTGVDLIIDATDNF---------ETRFIVNDAAQKYGIPWIYGA 148 (339)
T ss_pred HCCCcEEEEEeccCCHHHHHHHHcCCCEEEEcCCCH---------HHHHHHHHHHHHhCCCEEEEe
Confidence 3 45555443 223455678899999887743 224567788999999998644
No 252
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=34.21 E-value=2e+02 Score=29.24 Aligned_cols=109 Identities=13% Similarity=0.095 Sum_probs=65.2
Q ss_pred HHHHHHHhccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCC---------CCC-----chH----HHHHHHHHhCC
Q 006256 444 IVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDS---------RPK-----HEG----KLLLRRLVRKG 505 (653)
Q Consensus 444 Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ES---------RP~-----~EG----~~La~eL~~~G 505 (653)
++..+.++|. +..|+..|.+.+=..++..+...|.. +++++|. |-. .-| ..++++|.+..
T Consensus 11 ~g~~~q~~L~-~~~VlivG~GglGs~va~~La~~Gvg-~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n 88 (228)
T cd00757 11 IGEEGQEKLK-NARVLVVGAGGLGSPAAEYLAAAGVG-KLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAIN 88 (228)
T ss_pred cCHHHHHHHh-CCcEEEECCCHHHHHHHHHHHHcCCC-EEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhC
Confidence 5555666675 57899999876555556666666764 2333221 111 012 12235565543
Q ss_pred --CCEEEEcc----chHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeec
Q 006256 506 --LSCTYTHI----NAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (653)
Q Consensus 506 --I~vT~I~D----sAv~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~a 563 (653)
+.++.+.. ..+..++.++|.||...|... .-..+.-.|+.+++|++.+.
T Consensus 89 p~~~i~~~~~~i~~~~~~~~~~~~DvVi~~~d~~~---------~r~~l~~~~~~~~ip~i~~g 143 (228)
T cd00757 89 PDVEIEAYNERLDAENAEELIAGYDLVLDCTDNFA---------TRYLINDACVKLGKPLVSGA 143 (228)
T ss_pred CCCEEEEecceeCHHHHHHHHhCCCEEEEcCCCHH---------HHHHHHHHHHHcCCCEEEEE
Confidence 55555432 234456778999988877542 23567788999999998764
No 253
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=34.20 E-value=46 Score=30.55 Aligned_cols=67 Identities=18% Similarity=0.224 Sum_probs=41.4
Q ss_pred HHHHHHHHhCCCCEEEEccc--hHHHHhh--hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeecccc
Q 006256 495 KLLLRRLVRKGLSCTYTHIN--AISYIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (653)
Q Consensus 495 ~~La~eL~~~GI~vT~I~Ds--Av~~iM~--~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~aety 566 (653)
.+|..+|.+.|..+..+... +...+.. .+.+|++..| +.-.....-..-.+-.+.+++||+++.+..
T Consensus 7 ~~l~~~L~~~~~~vv~~~~~dd~~~~i~~~~~i~avvi~~d-----~~~~~~~~~ll~~i~~~~~~iPVFl~~~~~ 77 (115)
T PF03709_consen 7 RELAEALEQRGREVVDADSTDDALAIIESFTDIAAVVISWD-----GEEEDEAQELLDKIRERNFGIPVFLLAERD 77 (115)
T ss_dssp HHHHHHHHHTTTEEEEESSHHHHHHHHHCTTTEEEEEEECH-----HHHHHHHHHHHHHHHHHSTT-EEEEEESCC
T ss_pred HHHHHHHHHCCCEEEEeCChHHHHHHHHhCCCeeEEEEEcc-----cccchhHHHHHHHHHHhCCCCCEEEEecCC
Confidence 35667888889988888643 4555544 6889999887 111111111222234455799999999854
No 254
>PRK07324 transaminase; Validated
Probab=34.18 E-value=1.9e+02 Score=31.43 Aligned_cols=103 Identities=17% Similarity=0.231 Sum_probs=55.8
Q ss_pred ccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc----------hHHHHhh
Q 006256 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN----------AISYIIH 521 (653)
Q Consensus 452 I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds----------Av~~iM~ 521 (653)
+....+|+|.|.+.++..++......|. +|++. .|.+.+.. ..+...|..+..+... .+...+.
T Consensus 78 ~~~~~vi~t~G~~~al~~~~~~l~~~gd--~Vl~~--~P~y~~~~--~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~ 151 (373)
T PRK07324 78 VKPENILQTNGATGANFLVLYALVEPGD--HVISV--YPTYQQLY--DIPESLGAEVDYWQLKEENGWLPDLDELRRLVR 151 (373)
T ss_pred CChhhEEEcCChHHHHHHHHHHhCCCCC--EEEEc--CCCchhHH--HHHHHcCCEEEEEecccccCCCCCHHHHHHhCC
Confidence 3345688888888887666655544343 45553 46665433 2344568777776421 1222222
Q ss_pred -hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 522 -~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
++..|++- .-=-..|.++++.--..++-+|++|++.+++
T Consensus 152 ~~~kli~i~-~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~ 191 (373)
T PRK07324 152 PNTKLICIN-NANNPTGALMDRAYLEEIVEIARSVDAYVLS 191 (373)
T ss_pred CCCcEEEEe-CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 33344332 1112335555544456677788999985554
No 255
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=34.09 E-value=5e+02 Score=27.95 Aligned_cols=99 Identities=17% Similarity=0.111 Sum_probs=47.1
Q ss_pred CEEEEeCChHHHHHHHHHHHHc-CCeeEEEEeCCCCCchHHHHHHHHH--hCCCCEEEEccc--------hHHHHhh-hc
Q 006256 456 DVLLTYGSSSAVEMILQHAHEL-GKQFRVVIVDSRPKHEGKLLLRRLV--RKGLSCTYTHIN--------AISYIIH-EV 523 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~-gk~f~ViV~ESRP~~EG~~La~eL~--~~GI~vT~I~Ds--------Av~~iM~-~V 523 (653)
.+++|.+.++..+..+..+... ++.-.|++ +.|.+.....+..+. ..|+.+.++.-. .+-..+. ++
T Consensus 83 ~v~~~~~g~~~~~~~~~~~~~~~~~gd~Vl~--~~~~h~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~t 160 (398)
T cd00613 83 NASLQDEATAAAEAAGLAAIRAYHKRNKVLV--PDSAHPTNPAVARTRGEPLGIEVVEVPSDEGGTVDLEALKEEVSEEV 160 (398)
T ss_pred ceeccCchHHHHHHHHHHHHhcccCCCEEEE--cCccCcchHHHHHHhcccCCcEEEEeccCCCCCcCHHHHHHhcCCCe
Confidence 4555654444444444444322 22345555 344444433333332 234666655321 2222222 34
Q ss_pred cEEEEcceeEecCCCeecccch-HHHHHHHhhCCCCeee
Q 006256 524 TRVFLGASSVLSNGTVCSRVGT-ACVAMVAYGFHIPVLV 561 (653)
Q Consensus 524 d~VllGAdaIlaNG~V~NKiGT-~~lAl~Ak~~~VPVyV 561 (653)
.+|++-. .-..|.+ ..- -.|+-+|++|++.++|
T Consensus 161 ~~viv~~--~~~~G~~---~~~l~~i~~la~~~g~~liv 194 (398)
T cd00613 161 AALMVQY--PNTLGVF---EDLIKEIADIAHSAGALVYV 194 (398)
T ss_pred EEEEEEC--CCCCcee---cchHHHHHHHHHhcCCEEEE
Confidence 4444433 2334544 243 5577789999988877
No 256
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=34.04 E-value=76 Score=35.72 Aligned_cols=77 Identities=14% Similarity=0.086 Sum_probs=44.8
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhh--hccEEEEcceeE
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIH--EVTRVFLGASSV 533 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~--~Vd~VllGAdaI 533 (653)
..||.+|.+--=..+...+.+.+....||+ -|.+.|....... ..+++.+....++..+.+ ++|.|++|.+..
T Consensus 5 ~kvLviG~g~rehal~~~~~~~~~~~~~~~---~pgn~g~~~~~~~--~~~~~~~~d~~~l~~~a~~~~iD~Vv~g~E~~ 79 (426)
T PRK13789 5 LKVLLIGSGGRESAIAFALRKSNLLSELKV---FPGNGGFPDDELL--PADSFSILDKSSVQSFLKSNPFDLIVVGPEDP 79 (426)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCCCEEEE---ECCchHHhccccc--cccCcCcCCHHHHHHHHHHcCCCEEEECCchH
Confidence 579999987543355566666666667887 4656554321111 112222233345555555 499999998776
Q ss_pred ecCC
Q 006256 534 LSNG 537 (653)
Q Consensus 534 laNG 537 (653)
+..|
T Consensus 80 l~~g 83 (426)
T PRK13789 80 LVAG 83 (426)
T ss_pred HHHH
Confidence 6544
No 257
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=34.03 E-value=3.4e+02 Score=27.23 Aligned_cols=109 Identities=15% Similarity=0.169 Sum_probs=64.4
Q ss_pred HHHHHHHhccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCC---Cch-----------H----HHHHHHHHhC-
Q 006256 444 IVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRP---KHE-----------G----KLLLRRLVRK- 504 (653)
Q Consensus 444 Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP---~~E-----------G----~~La~eL~~~- 504 (653)
++..+.++|. +..||..|.+.+=..+++.+...|.. +++++|... .+= | ..++++|.+.
T Consensus 11 ~g~~~q~kl~-~~~VlviG~GglGs~ia~~La~~Gv~-~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n 88 (202)
T TIGR02356 11 IGEEGQQRLL-NSHVLIIGAGGLGSPAALYLAGAGVG-TIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELN 88 (202)
T ss_pred cCHHHHHHhc-CCCEEEECCCHHHHHHHHHHHHcCCC-eEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhC
Confidence 4555666665 57888999876655566666666754 344444321 111 1 1223555543
Q ss_pred -CCCEEEEcc----chHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeec
Q 006256 505 -GLSCTYTHI----NAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (653)
Q Consensus 505 -GI~vT~I~D----sAv~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~a 563 (653)
.+.++.+.. ..+..++.++|.||...|..- --..+.-.|+.+++||+.+.
T Consensus 89 p~v~i~~~~~~i~~~~~~~~~~~~D~Vi~~~d~~~---------~r~~l~~~~~~~~ip~i~~~ 143 (202)
T TIGR02356 89 SDIQVTALKERVTAENLELLINNVDLVLDCTDNFA---------TRYLINDACVALGTPLISAA 143 (202)
T ss_pred CCCEEEEehhcCCHHHHHHHHhCCCEEEECCCCHH---------HHHHHHHHHHHcCCCEEEEE
Confidence 455554432 234456778998887766532 12356778999999998765
No 258
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=33.97 E-value=3.1e+02 Score=28.55 Aligned_cols=63 Identities=24% Similarity=0.254 Sum_probs=37.9
Q ss_pred HHHHHHHHHH----cCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcceeEec
Q 006256 467 VEMILQHAHE----LGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLS 535 (653)
Q Consensus 467 Ve~vL~~A~e----~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAdaIla 535 (653)
.+.++.+|++ -+.++-|=|.=| .+|.+..+.|.+.||+|..+..-++...+- ..-.||+-|..
T Consensus 66 ~~~mi~eA~~l~~~~~~nv~VKIP~T---~~Gl~Ai~~L~~~Gi~vn~T~ifs~~Qa~~---Aa~aGa~yvsP 132 (222)
T PRK12656 66 YEGILKDAHEIRRQCGDDVYIKVPVT---PAGLAAIKTLKAEGYHITATAIYTVFQGLL---AIEAGADYLAP 132 (222)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCC---HHHHHHHHHHHHCCCceEEeeeCCHHHHHH---HHHCCCCEEec
Confidence 4455555543 345555544333 359999999999999998776544433332 11266666655
No 259
>PLN02242 methionine gamma-lyase
Probab=33.94 E-value=3.5e+02 Score=30.32 Aligned_cols=99 Identities=24% Similarity=0.212 Sum_probs=49.0
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHH-HHHHh-CCCCEEEEccc---hHHHHhhh-ccEEEE
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVR-KGLSCTYTHIN---AISYIIHE-VTRVFL 528 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La-~eL~~-~GI~vT~I~Ds---Av~~iM~~-Vd~Vll 528 (653)
..++|-+-..++..+|....+.|. +|++.+ |.+.+. .++ ..+.+ .|+.++++... .+-..+.. -+++|+
T Consensus 93 ~~l~~~sG~~Ai~~al~al~~~GD--~Vl~~~--~~Y~~~~~~~~~~~~~~~G~~~~~~d~~d~e~l~~~i~~~~tklV~ 168 (418)
T PLN02242 93 AAYCTASGMSAISSVLLQLCSSGG--HVVASN--TLYGGTHALLAHFLPRKCNITTTFVDITDLEAVKKAVVPGKTKVLY 168 (418)
T ss_pred eEEEEccHHHHHHHHHHHHhCCCC--EEEEcC--CcHHHHHHHHHHhhhhccCceEEEcCCCCHHHHHHhcCcCCCEEEE
Confidence 345554444566555555544443 555443 555444 333 23333 78888877432 33333432 133333
Q ss_pred cceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 529 GASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 529 GAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
-..---..|.++. -..++-+|++|+++++|
T Consensus 169 lesp~NPtG~v~d---l~~I~~la~~~gi~liv 198 (418)
T PLN02242 169 FESISNPTLTVAD---IPELARIAHEKGVTVVV 198 (418)
T ss_pred EecCCCCCCcccC---HHHHHHHHHHhCCEEEE
Confidence 1111112333331 23566788999987775
No 260
>PRK10116 universal stress protein UspC; Provisional
Probab=33.60 E-value=3.6e+02 Score=24.35 Aligned_cols=36 Identities=19% Similarity=0.146 Sum_probs=26.2
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeee
Q 006256 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (653)
Q Consensus 522 ~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~ 562 (653)
.+|+|++|.+.--. ..+.++ ...-+.++.++||+|+
T Consensus 102 ~~DLiV~g~~~~~~----~~~~~s-~a~~v~~~~~~pVLvv 137 (142)
T PRK10116 102 HFDLVICGNHNHSF----FSRASC-SAKRVIASSEVDVLLV 137 (142)
T ss_pred CCCEEEEcCCcchH----HHHHHH-HHHHHHhcCCCCEEEE
Confidence 69999999986522 444452 2445788999999997
No 261
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=33.33 E-value=2e+02 Score=31.56 Aligned_cols=60 Identities=18% Similarity=0.105 Sum_probs=40.2
Q ss_pred EEEEeCCh-HHHHHHHHHHHHcCCeeEEEEeCCCCCchH--HHHHHHHHhCCCCEEEEccchH
Q 006256 457 VLLTYGSS-SAVEMILQHAHELGKQFRVVIVDSRPKHEG--KLLLRRLVRKGLSCTYTHINAI 516 (653)
Q Consensus 457 vILT~g~S-s~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG--~~La~eL~~~GI~vT~I~DsAv 516 (653)
.|.||+.= ..++..+..|++.|....+.+..+-..... .++++.+.+.|.+|.||+|++-
T Consensus 105 ri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G 167 (333)
T TIGR03217 105 RVATHCTEADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVYIVDSAG 167 (333)
T ss_pred EEEeccchHHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEEEccCCC
Confidence 36666643 456677888888887767767666443333 3445777788888888888753
No 262
>PRK08912 hypothetical protein; Provisional
Probab=33.30 E-value=4.1e+02 Score=28.71 Aligned_cols=91 Identities=21% Similarity=0.250 Sum_probs=50.3
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc---------hHHHHhh-hccE
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---------AISYIIH-EVTR 525 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds---------Av~~iM~-~Vd~ 525 (653)
++|+|.|.+.++..++....+.| -+|++.+ |.+.+... .+...|+.+..+... .+-..+. ++..
T Consensus 89 ~i~~t~G~~~al~~~~~~~~~~g--d~Vlv~~--p~y~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 162 (387)
T PRK08912 89 EVMVTSGATEALAAALLALVEPG--DEVVLFQ--PLYDAYLP--LIRRAGGVPRLVRLEPPHWRLPRAALAAAFSPRTKA 162 (387)
T ss_pred cEEEeCCcHHHHHHHHHHhcCCC--CEEEEeC--CCchhhHH--HHHHcCCEEEEEecCcccCcCCHHHHHHHhCccceE
Confidence 78999999888866665544333 3555543 66655443 345567776655321 1111121 3333
Q ss_pred EEEcceeEecCCCeecccchH-------HHHHHHhhCCCCee
Q 006256 526 VFLGASSVLSNGTVCSRVGTA-------CVAMVAYGFHIPVL 560 (653)
Q Consensus 526 VllGAdaIlaNG~V~NKiGT~-------~lAl~Ak~~~VPVy 560 (653)
|++ + ..-|..|+. .++-+|+.|++.++
T Consensus 163 v~l-------~-~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii 196 (387)
T PRK08912 163 VLL-------N-NPLNPAGKVFPREELALLAEFCQRHDAVAI 196 (387)
T ss_pred EEE-------e-CCCCCcCcccCHHHHHHHHHHHHHCCeEEE
Confidence 333 2 335667753 25667888887544
No 263
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=33.25 E-value=1.4e+02 Score=29.75 Aligned_cols=95 Identities=15% Similarity=0.276 Sum_probs=49.5
Q ss_pred CEEEEeCCh----HHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc---chHHHHhhh--ccEE
Q 006256 456 DVLLTYGSS----SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---NAISYIIHE--VTRV 526 (653)
Q Consensus 456 dvILT~g~S----s~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D---sAv~~iM~~--Vd~V 526 (653)
..|..|+-| .++..++.+..++....+|+++-+-| .|.+++..+...++.+.|.+. .++..++.. -+.+
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~--tg~~~~~~~~~~~v~~~~~P~D~~~~~~rfl~~~~P~~~ 99 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTP--TGREMARKLLPDRVDVQYLPLDFPWAVRRFLDHWRPDLL 99 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-C--CHHHHHHGG-GGG-SEEE---SSHHHHHHHHHHH--SEE
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCC--chHHHHHHhCCCCeEEEEeCccCHHHHHHHHHHhCCCEE
Confidence 899999988 34556666666655677888876643 488888666566889999863 245555654 3555
Q ss_pred E-EcceeEecCCCeecccchHHHHHHHhhCCCCeeeecc
Q 006256 527 F-LGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCE 564 (653)
Q Consensus 527 l-lGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~ae 564 (653)
| ++.|-. .| +-..|+..|||++.+..
T Consensus 100 i~~EtElW-Pn-----------ll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 100 IWVETELW-PN-----------LLREAKRRGIPVVLVNA 126 (186)
T ss_dssp EEES-----HH-----------HHHH-----S-EEEEEE
T ss_pred EEEccccC-HH-----------HHHHHhhcCCCEEEEee
Confidence 4 455433 33 66788999999998865
No 264
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=33.21 E-value=4.6e+02 Score=28.87 Aligned_cols=107 Identities=20% Similarity=0.246 Sum_probs=55.4
Q ss_pred HHHHHHHHHHh----ccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc---
Q 006256 441 DRVIVKHAVTK----IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--- 513 (653)
Q Consensus 441 ~~~Ia~~a~~~----I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D--- 513 (653)
.+.|+++.... +...++|+|.|.+.++..+++...+.|. .|++. .|.+.+.... +...|+.+..+..
T Consensus 80 r~aia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~~l~~~gd--~v~v~--~P~y~~~~~~--~~~~g~~~~~~~~~~~ 153 (409)
T PLN00143 80 RRAIADYLSNDLPYQLSPDDVYLTLGCKHAAEIIIKVLARPEA--NILLP--RPGFPDVETY--AIFHHLEIRHFDLLPE 153 (409)
T ss_pred HHHHHHHHHhhcCCCCCHhhEEEecChHHHHHHHHHHHcCCCC--EEEEc--CCCCcCHHHH--HHHcCCEEEEEeccCC
Confidence 34455544332 4445788998888888665554444343 44443 2666554333 3345666665531
Q ss_pred -------chHHHHhh-hccEEEEcceeEecCCCeecccchH-------HHHHHHhhCCCCeee
Q 006256 514 -------NAISYIIH-EVTRVFLGASSVLSNGTVCSRVGTA-------CVAMVAYGFHIPVLV 561 (653)
Q Consensus 514 -------sAv~~iM~-~Vd~VllGAdaIlaNG~V~NKiGT~-------~lAl~Ak~~~VPVyV 561 (653)
.++-..+. +..+++ +.|= -|.+|+. .++-+|+.|++.+++
T Consensus 154 ~~~~~d~~~l~~~~~~~~~~~~------~~nP--~NPTG~~~s~~~~~~l~~~a~~~~~~ii~ 208 (409)
T PLN00143 154 KGWEVDLDAVEAIADENTIAMV------IINP--GNPCGSVYSYEHLNKIAETARKLGILVIA 208 (409)
T ss_pred CCCcCCHHHHHHhcccCCEEEE------EECC--CCCCCCccCHHHHHHHHHHHHHcCCeEEE
Confidence 11222221 233332 2232 3677765 456678888876653
No 265
>PLN02214 cinnamoyl-CoA reductase
Probab=33.04 E-value=2.8e+02 Score=29.71 Aligned_cols=108 Identities=19% Similarity=0.105 Sum_probs=57.0
Q ss_pred CCCEEEEeCChHHHHHH-HHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEE-cc----chHHHHhhhccEEE
Q 006256 454 DGDVLLTYGSSSAVEMI-LQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT-HI----NAISYIIHEVTRVF 527 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~v-L~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I-~D----sAv~~iM~~Vd~Vl 527 (653)
.+.+||..|.+..+... ++.+.++|. +|+++.-.+..........|...+-.++++ .| ..+..+|..+|.||
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi 86 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLERGY--TVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVF 86 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEE
Confidence 45678888876555433 344555564 555443222111111122333211134444 22 34566677888888
Q ss_pred EcceeEecCC---CeecccchHHHHHHHhhCCCCeeeec
Q 006256 528 LGASSVLSNG---TVCSRVGTACVAMVAYGFHIPVLVCC 563 (653)
Q Consensus 528 lGAdaIlaNG---~V~NKiGT~~lAl~Ak~~~VPVyV~a 563 (653)
--|-....+- --.|-.||..+.-+|+.+++.-+|..
T Consensus 87 h~A~~~~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~ 125 (342)
T PLN02214 87 HTASPVTDDPEQMVEPAVNGAKFVINAAAEAKVKRVVIT 125 (342)
T ss_pred EecCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 7664332111 01367799999989999998644443
No 266
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=32.67 E-value=5.2e+02 Score=25.83 Aligned_cols=42 Identities=7% Similarity=-0.161 Sum_probs=28.6
Q ss_pred CCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEE
Q 006256 487 DSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFL 528 (653)
Q Consensus 487 ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~Vll 528 (653)
-|.-..+-..+++.+.+.|+++..|+-+.-+.+-+.+|.+|.
T Consensus 120 ~SG~t~~~i~~~~~ak~~g~~iI~iT~~~~s~l~~~ad~~l~ 161 (192)
T PRK00414 120 TSGNSGNIIKAIEAARAKGMKVITLTGKDGGKMAGLADIEIR 161 (192)
T ss_pred CCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEE
Confidence 333333445666788888999988887665666667888874
No 267
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=32.56 E-value=4.1e+02 Score=29.48 Aligned_cols=34 Identities=29% Similarity=0.266 Sum_probs=24.2
Q ss_pred hHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeec
Q 006256 515 AISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (653)
Q Consensus 515 Av~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~a 563 (653)
.+..+|..+|+|| .+.||.+ +=+-.+++|.+++=
T Consensus 289 ~~~~~l~~ADlvI-------------~rSGt~T--~E~a~lg~P~Ilip 322 (396)
T TIGR03492 289 AFAEILHWADLGI-------------AMAGTAT--EQAVGLGKPVIQLP 322 (396)
T ss_pred hHHHHHHhCCEEE-------------ECcCHHH--HHHHHhCCCEEEEe
Confidence 3567788888774 3467755 44777899998865
No 268
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=32.52 E-value=1.5e+02 Score=29.01 Aligned_cols=55 Identities=9% Similarity=0.174 Sum_probs=33.0
Q ss_pred EEEeCChHHHHHHHHHHHHcC---CeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc
Q 006256 458 LLTYGSSSAVEMILQHAHELG---KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (653)
Q Consensus 458 ILT~g~Ss~Ve~vL~~A~e~g---k~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~ 512 (653)
|-||.....+..+|....++. ..++|||+|.....+-..+++++.+....+.++.
T Consensus 6 ip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~~~~~~v~~i~ 63 (249)
T cd02525 6 IPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAAKDPRIRLID 63 (249)
T ss_pred EEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHHhcCCeEEEEe
Confidence 455555556666666666544 3577777776666555566666655544455553
No 269
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=32.52 E-value=2.8e+02 Score=26.99 Aligned_cols=106 Identities=17% Similarity=0.229 Sum_probs=65.0
Q ss_pred CCEEEEeCC------h--HHHHHHHHHHHHcCCeeEEEEeCCCCC------------chHHHHHHHHHhCCCCEEEEcc-
Q 006256 455 GDVLLTYGS------S--SAVEMILQHAHELGKQFRVVIVDSRPK------------HEGKLLLRRLVRKGLSCTYTHI- 513 (653)
Q Consensus 455 GdvILT~g~------S--s~Ve~vL~~A~e~gk~f~ViV~ESRP~------------~EG~~La~eL~~~GI~vT~I~D- 513 (653)
..+++|+|+ + .++..++..|.+.+..--|+.-+..|. ..-.+=.+.|.+.||+..++.+
T Consensus 5 ~~~~v~iG~FDGvH~GHq~Li~~~~~~a~~~~~~~~v~tF~~~P~~~~~~~~~~~~l~s~~ek~~~l~~~Gvd~~~~~~F 84 (157)
T PF06574_consen 5 KKSVVAIGNFDGVHLGHQKLIKKAVEIAKEKGLKSVVLTFDPHPKEVLNPDKPPKLLTSLEEKLELLESLGVDYVIVIPF 84 (157)
T ss_dssp S-EEEEES--TT--HHHHHHHHHHHHHHHHCT-EEEEEEESS-CHHHHSCTCCGGBSS-HHHHHHHHHHTTESEEEEE-C
T ss_pred CCcEEEEeCCCCccHHHHHHHHHHhhhhhhcccceEEEEcccCHHHHhcCCCcccCCCCHHHHHHHHHHcCCCEEEEecc
Confidence 357888876 2 366777777777777777888887772 2334445778899999877754
Q ss_pred c-hHH---------HHhh---hccEEEEcceeEecCCCeecccchH-HHHHHHhhCCCCeeeecc
Q 006256 514 N-AIS---------YIIH---EVTRVFLGASSVLSNGTVCSRVGTA-CVAMVAYGFHIPVLVCCE 564 (653)
Q Consensus 514 s-Av~---------~iM~---~Vd~VllGAdaIlaNG~V~NKiGT~-~lAl~Ak~~~VPVyV~ae 564 (653)
+ .++ .++. .+..+++|.|-=+-. ++.|+. .+.-+++.+++.|+++-+
T Consensus 85 ~~~~~~ls~~~Fi~~iL~~~l~~~~ivvG~DfrFG~----~~~G~~~~L~~~~~~~g~~v~~v~~ 145 (157)
T PF06574_consen 85 TEEFANLSPEDFIEKILKEKLNVKHIVVGEDFRFGK----NRSGDVELLKELGKEYGFEVEVVPP 145 (157)
T ss_dssp CCHHCCS-HHHHHHHHCCCHCTEEEEEEETT-EESG----GGEEEHHHHHHCTTTT-SEEEEE--
T ss_pred hHHHHcCCHHHHHHHHHHhcCCccEEEEccCccCCC----CCCCCHHHHHHhcccCceEEEEECC
Confidence 2 211 2222 578999999988854 455554 455577788888888654
No 270
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=32.32 E-value=2.3e+02 Score=31.42 Aligned_cols=97 Identities=16% Similarity=0.181 Sum_probs=61.6
Q ss_pred CCCEEEEeCChH---HHHHHHHHHHHcCC-eeEEEEeCCCCCchHHHHHHHHHhCC-CCEEEEccchHHHHhhhccEEEE
Q 006256 454 DGDVLLTYGSSS---AVEMILQHAHELGK-QFRVVIVDSRPKHEGKLLLRRLVRKG-LSCTYTHINAISYIIHEVTRVFL 528 (653)
Q Consensus 454 dGdvILT~g~Ss---~Ve~vL~~A~e~gk-~f~ViV~ESRP~~EG~~La~eL~~~G-I~vT~I~DsAv~~iM~~Vd~Vll 528 (653)
+-.+||+.|-|. .+..++..+..... ++.|+..-.+-..+ ++-..+.+.| +.+....|+ +..+|..+|+|
T Consensus 182 ~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~~~~v~~~~G~~~~~--~~~~~~~~~~~~~v~~f~~d-m~~~~~~ADLv-- 256 (357)
T COG0707 182 DKKTILVTGGSQGAKALNDLVPEALAKLANRIQVIHQTGKNDLE--ELKSAYNELGVVRVLPFIDD-MAALLAAADLV-- 256 (357)
T ss_pred CCcEEEEECCcchhHHHHHHHHHHHHHhhhCeEEEEEcCcchHH--HHHHHHhhcCcEEEeeHHhh-HHHHHHhccEE--
Confidence 557999999874 55666666655444 46766654443322 3335556666 444444565 55667788887
Q ss_pred cceeEecCCCeecccchHHHHHHHhhCCCCeeeeccccc
Q 006256 529 GASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYK 567 (653)
Q Consensus 529 GAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~aetyK 567 (653)
+.|.|...++-++ ..++|.+.+=.-+.
T Consensus 257 -----------IsRaGa~Ti~E~~-a~g~P~IliP~p~~ 283 (357)
T COG0707 257 -----------ISRAGALTIAELL-ALGVPAILVPYPPG 283 (357)
T ss_pred -----------EeCCcccHHHHHH-HhCCCEEEeCCCCC
Confidence 5677877777654 46899998765443
No 271
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=32.19 E-value=68 Score=34.93 Aligned_cols=72 Identities=14% Similarity=0.144 Sum_probs=45.8
Q ss_pred CCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc-chHHHHhh--hccEEEEcce
Q 006256 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-NAISYIIH--EVTRVFLGAS 531 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D-sAv~~iM~--~Vd~VllGAd 531 (653)
..+||..|.+..-..+++.|.+. .++|++++..|..-|..++... +.+-+ .| .++..+.+ ++|.|+.+.+
T Consensus 12 ~~~ilIiG~g~~~~~~~~a~~~~--G~~v~~~~~~~~~~~~~~ad~~----~~~~~-~d~~~l~~~~~~~~id~vi~~~e 84 (395)
T PRK09288 12 ATRVMLLGSGELGKEVAIEAQRL--GVEVIAVDRYANAPAMQVAHRS----HVIDM-LDGDALRAVIEREKPDYIVPEIE 84 (395)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCCCCchHHhhhhe----EECCC-CCHHHHHHHHHHhCCCEEEEeeC
Confidence 35899999987665667766653 5688899999987776654321 00001 22 34444555 6888888876
Q ss_pred eE
Q 006256 532 SV 533 (653)
Q Consensus 532 aI 533 (653)
.+
T Consensus 85 ~~ 86 (395)
T PRK09288 85 AI 86 (395)
T ss_pred cC
Confidence 54
No 272
>PRK06225 aspartate aminotransferase; Provisional
Probab=32.16 E-value=2.8e+02 Score=29.90 Aligned_cols=100 Identities=14% Similarity=0.099 Sum_probs=52.4
Q ss_pred cCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc-cc-------hHHHHhhhcc
Q 006256 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-IN-------AISYIIHEVT 524 (653)
Q Consensus 453 ~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~-Ds-------Av~~iM~~Vd 524 (653)
....+++|.|.+.++..++..+...|. +|++.+ |.+.... ..+...|..+.++. +. .+..+-..++
T Consensus 82 ~~~~v~~~~g~t~al~~~~~~~~~~gd--~vl~~~--p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~ 155 (380)
T PRK06225 82 DDDEALITAGATESLYLVMRAFLSPGD--NAVTPD--PGYLIID--NFASRFGAEVIEVPIYSEECNYKLTPELVKENMD 155 (380)
T ss_pred CCCcEEEeCCHHHHHHHHHHHhcCCCC--EEEEcC--CCCcchH--HHHHHhCceEEeeccccccCCccCCHHHHHhhcC
Confidence 445789999888888666665543343 455544 5543322 33456788777765 21 1122221111
Q ss_pred EEEEcceeEecCCCeecccch-------HHHHHHHhhCCCCeeee
Q 006256 525 RVFLGASSVLSNGTVCSRVGT-------ACVAMVAYGFHIPVLVC 562 (653)
Q Consensus 525 ~VllGAdaIlaNG~V~NKiGT-------~~lAl~Ak~~~VPVyV~ 562 (653)
- ....|+-. ..-|..|+ ..++-+|++|++++++=
T Consensus 156 ~---~~~~v~l~-~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~D 196 (380)
T PRK06225 156 E---NTRLIYLI-DPLNPLGSSYTEEEIKEFAEIARDNDAFLLHD 196 (380)
T ss_pred C---CceEEEEe-CCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEe
Confidence 0 11222211 12455664 33666789999987763
No 273
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=32.09 E-value=72 Score=30.05 Aligned_cols=72 Identities=10% Similarity=0.031 Sum_probs=44.0
Q ss_pred EEEeCCCCC-----chHHHHHHHHHhCCCCE-EEE-ccchHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhC
Q 006256 483 VVIVDSRPK-----HEGKLLLRRLVRKGLSC-TYT-HINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGF 555 (653)
Q Consensus 483 ViV~ESRP~-----~EG~~La~eL~~~GI~v-T~I-~DsAv~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~ 555 (653)
.|++-+.|+ .+|.++++.+.+.|.++ ++. .+.+|....+.. ...+. .+-=+.+...++..|
T Consensus 4 ~iv~~~~Py~~~~~~~al~~A~aa~~~gh~v~~vFf~~DgV~~a~~~q----------~p~~~--~~n~~~~~~~L~~~~ 71 (128)
T PRK00207 4 AIAVTGPAYGTQQASSAYQFAQALLAEGHELVSVFFYQDGVLNANALT----------VPASD--EFDLVRAWQQLAAEH 71 (128)
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEEehHHHHHHhcCC----------CCchh--hhhHHHHHHHHHHhc
Confidence 456677787 46778888888888763 332 344554444321 12221 111135566788899
Q ss_pred CCCeeeecccc
Q 006256 556 HIPVLVCCEAY 566 (653)
Q Consensus 556 ~VPVyV~aety 566 (653)
+|++|||...-
T Consensus 72 ~v~l~vC~~~a 82 (128)
T PRK00207 72 GVALNVCVAAA 82 (128)
T ss_pred CCEEEEeHHHH
Confidence 99999998764
No 274
>PLN02509 cystathionine beta-lyase
Probab=31.97 E-value=4.2e+02 Score=30.41 Aligned_cols=92 Identities=17% Similarity=0.177 Sum_probs=48.4
Q ss_pred EEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHH-HHHHhCCCCEEEEccchHHHHhh----hccEEEEcc
Q 006256 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHINAISYIIH----EVTRVFLGA 530 (653)
Q Consensus 457 vILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La-~eL~~~GI~vT~I~DsAv~~iM~----~Vd~VllGA 530 (653)
.|++-+...++ .++..+...|. +|++ +.|.+.|. .+. ..+...|+.+.++.......+-. +..+|++ .
T Consensus 151 ai~~~SG~aAi-~~il~ll~~GD--~VI~--~~~~y~~t~~ll~~~l~~~G~~v~~vd~~d~e~l~~ai~~~TklV~l-e 224 (464)
T PLN02509 151 AFCFTSGMAAL-SAVTHLIKNGE--EIVA--GDDVYGGSDRLLSQVVPRSGVVVKRVNTTNLDEVAAAIGPQTKLVWL-E 224 (464)
T ss_pred EEEeCcHHHHH-HHHHHHhCCCC--EEEE--cCCchhhHHHHHHHHHHHCCeEEEEeCCCCHHHHHHhCCcCCeEEEE-E
Confidence 34433333344 33334444444 5655 45666664 344 44677899888874332222222 2222322 1
Q ss_pred eeEecCCCeecccchH----HHHHHHhhCCCCeee
Q 006256 531 SSVLSNGTVCSRVGTA----CVAMVAYGFHIPVLV 561 (653)
Q Consensus 531 daIlaNG~V~NKiGT~----~lAl~Ak~~~VPVyV 561 (653)
...|..|.. .++-+||+||++++|
T Consensus 225 -------sPsNPtG~i~Dl~~I~~lAk~~g~~lIV 252 (464)
T PLN02509 225 -------SPTNPRQQISDIRKIAEMAHAQGALVLV 252 (464)
T ss_pred -------CCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 244555544 366678999988876
No 275
>PRK13566 anthranilate synthase; Provisional
Probab=31.94 E-value=1.5e+02 Score=35.88 Aligned_cols=83 Identities=18% Similarity=0.227 Sum_probs=51.4
Q ss_pred cCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHh--hhccEEEE-cceeEecCCCeecccchHHHHHHHh
Q 006256 477 LGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYII--HEVTRVFL-GASSVLSNGTVCSRVGTACVAMVAY 553 (653)
Q Consensus 477 ~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM--~~Vd~Vll-GAdaIlaNG~V~NKiGT~~lAl~Ak 553 (653)
.|+..+|.|+|-...+ -..+++.|.+.|+.|+++....-...+ .++|.||| |-- |+ .+..+...+--.|.
T Consensus 523 ~~~g~~IlvID~~dsf-~~~l~~~Lr~~G~~v~vv~~~~~~~~~~~~~~DgVVLsgGp-----gs-p~d~~~~~lI~~a~ 595 (720)
T PRK13566 523 VGEGKRVLLVDHEDSF-VHTLANYFRQTGAEVTTVRYGFAEEMLDRVNPDLVVLSPGP-----GR-PSDFDCKATIDAAL 595 (720)
T ss_pred CCCCCEEEEEECCCch-HHHHHHHHHHCCCEEEEEECCCChhHhhhcCCCEEEECCCC-----CC-hhhCCcHHHHHHHH
Confidence 3556788888877544 336678999999999998754322222 25788776 211 11 12234444444555
Q ss_pred hCCCCeeeecccc
Q 006256 554 GFHIPVLVCCEAY 566 (653)
Q Consensus 554 ~~~VPVyV~aety 566 (653)
..++||+-+|=-+
T Consensus 596 ~~~iPILGIClG~ 608 (720)
T PRK13566 596 ARNLPIFGVCLGL 608 (720)
T ss_pred HCCCcEEEEehhH
Confidence 6799999777433
No 276
>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Probab=31.78 E-value=4.8e+02 Score=28.19 Aligned_cols=97 Identities=10% Similarity=0.008 Sum_probs=53.3
Q ss_pred CCCEEEEeCCh-HHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc-cch------HH---HHhh-
Q 006256 454 DGDVLLTYGSS-SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-INA------IS---YIIH- 521 (653)
Q Consensus 454 dGdvILT~g~S-s~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~-DsA------v~---~iM~- 521 (653)
+..+|+|-|.+ ..++.++......+++..+++ ++|+ |.+++..+.+.|++++++. +.. .. ..+.
T Consensus 62 ~~~vvf~~gs~T~a~~~~~~~l~~~~~~~~~i~--~g~~--~~~~~~~a~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~ 137 (355)
T cd00611 62 NYKVLFLQGGATGQFAAVPLNLLGDKGTADYVV--TGAW--SAKAAKEAKRYGGVVVIVAAKEEGKYTKIPDVETWDLAP 137 (355)
T ss_pred CceEEEEcCCchHHHHHHHHhcCCCCCeEEEEE--CCHH--HHHHHHHHHhcCCCcEEEecccccCCCCCCCHhhcCCCC
Confidence 34688888844 467766666543344433333 3555 4455555677799988875 311 11 1122
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeec
Q 006256 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (653)
Q Consensus 522 ~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~a 563 (653)
+++. |.-++.-...|..+. .+++.||+.|+|=|
T Consensus 138 ~~~l-V~~~h~~t~tG~~~~--------~i~~~~g~~~~VDa 170 (355)
T cd00611 138 DAAY-VHYCSNETIHGVEFD--------EVPDTGGVPLVADM 170 (355)
T ss_pred CCCE-EEEeCCcccccEEcc--------eecccCCCeEEEEc
Confidence 3443 444555555555433 34555888777733
No 277
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=31.72 E-value=3.1e+02 Score=29.89 Aligned_cols=96 Identities=20% Similarity=0.333 Sum_probs=50.5
Q ss_pred ccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc----------chHHHHhh
Q 006256 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI----------NAISYIIH 521 (653)
Q Consensus 452 I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D----------sAv~~iM~ 521 (653)
+....+++|.|.+.++..++....+.|. +|++. .|.+.... ..+...|+.+..+.. ..+-..+.
T Consensus 93 ~~~~~i~~t~G~~~al~~~~~~l~~~gd--~v~i~--~P~y~~~~--~~~~~~g~~v~~~~~~~~~~~~~d~~~l~~~~~ 166 (401)
T TIGR01264 93 IEADDVVLCSGCSHAIEMCIAALANAGQ--NILVP--RPGFPLYE--TLAESMGIEVKLYNLLPDKSWEIDLKQLESLID 166 (401)
T ss_pred CCHHHEEECcChHHHHHHHHHHhCCCCC--EEEEe--CCCChhHH--HHHHHcCCEEEEeecCCccCCCCCHHHHHHHhc
Confidence 3344577888888777555554433333 45554 36554332 334566887766531 11212222
Q ss_pred -hccEEEEcceeEecCCCeecccchH-------HHHHHHhhCCCCeee
Q 006256 522 -EVTRVFLGASSVLSNGTVCSRVGTA-------CVAMVAYGFHIPVLV 561 (653)
Q Consensus 522 -~Vd~VllGAdaIlaNG~V~NKiGT~-------~lAl~Ak~~~VPVyV 561 (653)
+..+|++ .| .-|..|+. .++-+|+++++.+++
T Consensus 167 ~~~~~v~~------~~--p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~ 206 (401)
T TIGR01264 167 EKTAALIV------NN--PSNPCGSVFSRQHLEEILAVAERQCLPIIA 206 (401)
T ss_pred cCceEEEE------cC--CCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 2334433 12 34566654 466677888876653
No 278
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=31.67 E-value=5e+02 Score=27.45 Aligned_cols=93 Identities=14% Similarity=0.170 Sum_probs=52.4
Q ss_pred CCEEEEeCChHH---HHHHHHHHHHc-CCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc-cchHHHHhhhccEEEEc
Q 006256 455 GDVLLTYGSSSA---VEMILQHAHEL-GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-INAISYIIHEVTRVFLG 529 (653)
Q Consensus 455 GdvILT~g~Ss~---Ve~vL~~A~e~-gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~-DsAv~~iM~~Vd~VllG 529 (653)
.-+|+.+|.+.- +..+|..|.++ .....+++.-++... ..+...+. .|+.+.++- ...+..+|..+|.+++.
T Consensus 183 ~~~i~~~gg~~~~~~~~~~l~~a~~~~~~~~~~~~~~G~g~~--~~~~~~~~-~~~~v~~~g~~~~~~~~~~~~d~~i~~ 259 (357)
T PRK00726 183 KPTLLVVGGSQGARVLNEAVPEALALLPEALQVIHQTGKGDL--EEVRAAYA-AGINAEVVPFIDDMAAAYAAADLVICR 259 (357)
T ss_pred CeEEEEECCcHhHHHHHHHHHHHHHHhhhCcEEEEEcCCCcH--HHHHHHhh-cCCcEEEeehHhhHHHHHHhCCEEEEC
Confidence 346788886532 23344344321 222233333232222 34445555 888755543 14678889999999863
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCCeeeecc
Q 006256 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCE 564 (653)
Q Consensus 530 AdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~ae 564 (653)
+ |+ ...+=|-.+|+|++++..
T Consensus 260 ~-------------g~-~~~~Ea~~~g~Pvv~~~~ 280 (357)
T PRK00726 260 A-------------GA-STVAELAAAGLPAILVPL 280 (357)
T ss_pred C-------------CH-HHHHHHHHhCCCEEEecC
Confidence 2 21 334567788999998864
No 279
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=31.66 E-value=6.5e+02 Score=26.65 Aligned_cols=75 Identities=9% Similarity=0.128 Sum_probs=41.1
Q ss_pred CCCEEEEeCC-----hHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH--HHHHHHHhCCCCEEEEccc-hHHHHhh---h
Q 006256 454 DGDVLLTYGS-----SSAVEMILQHAHELGKQFRVVIVDSRPKHEGK--LLLRRLVRKGLSCTYTHIN-AISYIIH---E 522 (653)
Q Consensus 454 dGdvILT~g~-----Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~--~La~eL~~~GI~vT~I~Ds-Av~~iM~---~ 522 (653)
.+.+|+..|. ++++..+...+..++...+|.++...++.-|. .|.......|+++..+.+. .+...+. +
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~~ 272 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLRD 272 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHccC
Confidence 4556776654 46665655555443123467777777766444 2223334468888766543 3444444 3
Q ss_pred ccEEEE
Q 006256 523 VTRVFL 528 (653)
Q Consensus 523 Vd~Vll 528 (653)
.|.||+
T Consensus 273 ~d~vli 278 (282)
T TIGR03499 273 KDLILI 278 (282)
T ss_pred CCEEEE
Confidence 566665
No 280
>PRK05957 aspartate aminotransferase; Provisional
Probab=31.65 E-value=3.6e+02 Score=29.34 Aligned_cols=93 Identities=14% Similarity=0.153 Sum_probs=52.0
Q ss_pred CCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc--------hHHHHhh-hccE
Q 006256 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN--------AISYIIH-EVTR 525 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds--------Av~~iM~-~Vd~ 525 (653)
.++++|.|....+..++....+.|. +|++. .|.+.+.... +...|+.+.++... .+-..+. ++..
T Consensus 90 ~~i~~t~G~~~~l~~~~~~~~~~gd--~Vlv~--~P~y~~~~~~--~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~kl 163 (389)
T PRK05957 90 QAIVVTAGSNMAFMNAILAITDPGD--EIILN--TPYYFNHEMA--ITMAGCQPILVPTDDNYQLQPEAIEQAITPKTRA 163 (389)
T ss_pred CeEEEeCChHHHHHHHHHHhcCCCC--EEEEe--CCCCcCHHHH--HHhcCCEEEEeecCCCCCcCHHHHHHhcCcCceE
Confidence 3577888887777555554444342 45553 4766555433 34678888777432 1111222 2333
Q ss_pred EEEcceeEecCCCeecccchH-------HHHHHHhhCCCCeee
Q 006256 526 VFLGASSVLSNGTVCSRVGTA-------CVAMVAYGFHIPVLV 561 (653)
Q Consensus 526 VllGAdaIlaNG~V~NKiGT~-------~lAl~Ak~~~VPVyV 561 (653)
|++ .| .-|..|+. .++-+|+.|++.+++
T Consensus 164 v~~------~~--p~NPtG~~~~~~~~~~i~~~a~~~~~~li~ 198 (389)
T PRK05957 164 IVT------IS--PNNPTGVVYPEALLRAVNQICAEHGIYHIS 198 (389)
T ss_pred EEE------eC--CCCCCCcCcCHHHHHHHHHHHHHcCcEEEE
Confidence 332 22 45777753 367788999977664
No 281
>COG0608 RecJ Single-stranded DNA-specific exonuclease [DNA replication, recombination, and repair]
Probab=31.59 E-value=1.7e+02 Score=33.47 Aligned_cols=85 Identities=20% Similarity=0.289 Sum_probs=56.8
Q ss_pred HHHHHHHHHhccCCCEEEEeCC-------hHHHHHHHHH-HHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc
Q 006256 442 RVIVKHAVTKIRDGDVLLTYGS-------SSAVEMILQH-AHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI 513 (653)
Q Consensus 442 ~~Ia~~a~~~I~dGdvILT~g~-------Ss~Ve~vL~~-A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D 513 (653)
+..++...+.|..+..|+.|+. |+++ +.. +.+.|..+.+++....=..-| ....+...+.+..+++|
T Consensus 23 ~~a~~~i~~ai~~~~~I~I~~d~DaDGitS~ai---l~~~L~~~g~~~~~~ip~~~~~~~g--~~~~~~~~~~~liItvD 97 (491)
T COG0608 23 EKAAARIAEAIEKGEKILIYGDYDADGITSAAI---LAKALRRLGADVDYYIPNRFEEGYG--AIRKLKEEGADLIITVD 97 (491)
T ss_pred HHHHHHHHHHHHcCCEEEEEEecCcccHHHHHH---HHHHHHHcCCceEEEeCCCccccch--HHHHHHhcCCCEEEEEC
Confidence 3455566667788888888864 3333 222 233588999999877655555 33578899999999999
Q ss_pred chHHHHhh--h-----ccEEEEcce
Q 006256 514 NAISYIIH--E-----VTRVFLGAS 531 (653)
Q Consensus 514 sAv~~iM~--~-----Vd~VllGAd 531 (653)
+..+.+=. . +|.||+==|
T Consensus 98 ~G~~~~~~i~~~~~~g~~vIVtDHH 122 (491)
T COG0608 98 NGSGSLEEIARAKELGIDVIVTDHH 122 (491)
T ss_pred CCcccHHHHHHHHhCCCcEEEECCC
Confidence 88776632 2 555555444
No 282
>PRK07681 aspartate aminotransferase; Provisional
Probab=31.32 E-value=2.9e+02 Score=30.20 Aligned_cols=98 Identities=15% Similarity=0.120 Sum_probs=52.2
Q ss_pred CCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc-h------HHHHh----hhc
Q 006256 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-A------ISYII----HEV 523 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds-A------v~~iM----~~V 523 (653)
.++++|.|.+.++..++....+.| -+|+|. .|.+.+.... +...|+.+..+... . +..+. +++
T Consensus 94 ~~I~it~G~~~al~~~~~~~~~~G--d~Vlv~--~P~y~~~~~~--~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~ 167 (399)
T PRK07681 94 KEVLLLMGSQDGLVHLPMVYANPG--DIILVP--DPGYTAYETG--IQMAGATSYYMPLKKENDFLPDLELIPEEIADKA 167 (399)
T ss_pred CeEEECCCcHHHHHHHHHHhCCCC--CEEEEC--CCCccchHHH--HHhcCCEEEEEecCCCCCCcCCHHHHHHhccccc
Confidence 568888888888865554443333 345553 3666655443 44578888777521 1 11121 234
Q ss_pred cEEEEc-ceeEecCCCeecccchHHHHHHHhhCCCCee
Q 006256 524 TRVFLG-ASSVLSNGTVCSRVGTACVAMVAYGFHIPVL 560 (653)
Q Consensus 524 d~VllG-AdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVy 560 (653)
..|++- .+- ..|.++++-=-..++-+|+.|++.++
T Consensus 168 k~v~l~~P~N--PTG~~~s~~~~~~i~~~a~~~~~~iI 203 (399)
T PRK07681 168 KMMILNFPGN--PVPAMAHEDFFKEVIAFAKKHNIIVV 203 (399)
T ss_pred eEEEEeCCCC--CcCcCCCHHHHHHHHHHHHHcCeEEE
Confidence 444332 000 11444443334567778899998554
No 283
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=31.29 E-value=4.5e+02 Score=27.37 Aligned_cols=54 Identities=7% Similarity=0.006 Sum_probs=32.9
Q ss_pred HHHHHHHhCCCCEE-EEccchHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeec
Q 006256 496 LLLRRLVRKGLSCT-YTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (653)
Q Consensus 496 ~La~eL~~~GI~vT-~I~DsAv~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~a 563 (653)
.+-..+.+.|+.-. .....-+..+|..+|.+++- .|+ ...+=|-.+|+|++++.
T Consensus 223 ~l~~~~~~~~l~~~v~~~~~~~~~~l~~ad~~v~~-------------~g~-~~l~Ea~~~g~Pvv~~~ 277 (348)
T TIGR01133 223 KVKNVYQELGIEAIVTFIDENMAAAYAAADLVISR-------------AGA-STVAELAAAGVPAILIP 277 (348)
T ss_pred HHHHHHhhCCceEEecCcccCHHHHHHhCCEEEEC-------------CCh-hHHHHHHHcCCCEEEee
Confidence 34444555676322 12232678889999988751 232 24446777899999863
No 284
>PRK07340 ornithine cyclodeaminase; Validated
Probab=31.28 E-value=3.6e+02 Score=28.90 Aligned_cols=89 Identities=16% Similarity=0.088 Sum_probs=51.8
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcc---
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA--- 530 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGA--- 530 (653)
+..+|+.+|.+..-...++.+.......+|+|. +|-...-.+|+.++.+.|+++. .++ ...++.++|.|+...
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~-~r~~~~a~~~a~~~~~~~~~~~--~~~-~~~av~~aDiVitaT~s~ 199 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVR-GRTAASAAAFCAHARALGPTAE--PLD-GEAIPEAVDLVVTATTSR 199 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEE-cCCHHHHHHHHHHHHhcCCeeE--ECC-HHHHhhcCCEEEEccCCC
Confidence 567899999986554444444331222345555 4433445677888877777766 232 333457888887521
Q ss_pred ee----EecCCCeecccchH
Q 006256 531 SS----VLSNGTVCSRVGTA 546 (653)
Q Consensus 531 da----IlaNG~V~NKiGT~ 546 (653)
+- .+.-|..+|-+|++
T Consensus 200 ~Pl~~~~~~~g~hi~~iGs~ 219 (304)
T PRK07340 200 TPVYPEAARAGRLVVAVGAF 219 (304)
T ss_pred CceeCccCCCCCEEEecCCC
Confidence 11 24566667777754
No 285
>PRK07050 cystathionine beta-lyase; Provisional
Probab=31.21 E-value=4.9e+02 Score=28.83 Aligned_cols=98 Identities=11% Similarity=0.086 Sum_probs=47.9
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHH-HH-HHHHhCCCCEEEEcc---chHHHHhh-hccEEEEc
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKL-LL-RRLVRKGLSCTYTHI---NAISYIIH-EVTRVFLG 529 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~-La-~eL~~~GI~vT~I~D---sAv~~iM~-~Vd~VllG 529 (653)
.+++|.|...++..+|....+ +.-+|++.+ |.+.+.. +. ..+...|+.++++.. ..+...+. +..+|++-
T Consensus 82 ~~l~~~sgt~Ai~~~l~al~~--~GD~Vl~~~--~~y~~~~~~~~~~~~~~Gi~v~~vd~~~~~~l~~~i~~~tklV~le 157 (394)
T PRK07050 82 HALLQPSGLAAISLVYFGLVK--AGDDVLIPD--NAYGPNRDHGEWLARDFGITVRFYDPLIGAGIADLIQPNTRLIWLE 157 (394)
T ss_pred eEEEeccHHHHHHHHHHHHhC--CCCEEEEec--CCcccHHHHHHHHHHhcCeEEEEECCCCHHHHHHhcCCCCeEEEEE
Confidence 344554445566555544433 334566543 4454433 33 345667888887742 23444443 23333221
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 530 AdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
. .+.-+....=-..++-+|+.++++|+|
T Consensus 158 --~--p~Np~~~~~di~~I~~ia~~~gi~liv 185 (394)
T PRK07050 158 --A--PGSVTMEVPDVPAITAAARARGVVTAI 185 (394)
T ss_pred --C--CCCCCccHhhHHHHHHHHHHcCCEEEE
Confidence 0 111112222234567778888887765
No 286
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=31.16 E-value=1.4e+02 Score=27.51 Aligned_cols=47 Identities=30% Similarity=0.301 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHcCCe-eEEEEeCCCCCchHHHHH-HHHHhCCCCEEEEccc
Q 006256 465 SAVEMILQHAHELGKQ-FRVVIVDSRPKHEGKLLL-RRLVRKGLSCTYTHIN 514 (653)
Q Consensus 465 s~Ve~vL~~A~e~gk~-f~ViV~ESRP~~EG~~La-~eL~~~GI~vT~I~Ds 514 (653)
.+.+.+++.|.+.|.+ ++|++-. ...|++.+ +.|...|+.+..|.|.
T Consensus 47 ~~a~~~~~~~~~~gi~~v~v~ikG---~g~gr~~~lk~l~~~gl~I~~I~D~ 95 (110)
T PF00411_consen 47 QAAEKIAKKAKELGIKTVRVKIKG---FGPGREAALKALKKSGLKIVSITDV 95 (110)
T ss_dssp HHHHHHHHHHHCTTEEEEEEEEES---SSTTHHHHHHHHHHTTSEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCeEEEEEEcC---CCccHHHHHHHHHhcCCEEEEEEee
Confidence 4567778888877744 5555533 55677665 8899999999999985
No 287
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=31.12 E-value=3.3e+02 Score=24.15 Aligned_cols=38 Identities=16% Similarity=-0.036 Sum_probs=28.8
Q ss_pred chHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEc
Q 006256 492 HEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLG 529 (653)
Q Consensus 492 ~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllG 529 (653)
.+-.++++.+.+.|+++..|+++.-..+-+-+|.+|.-
T Consensus 74 ~~~~~~~~~a~~~g~~iv~iT~~~~~~l~~~~d~~i~~ 111 (139)
T cd05013 74 KETVEAAEIAKERGAKVIAITDSANSPLAKLADIVLLV 111 (139)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCCCChhHHhcCEEEEc
Confidence 45566778899999999999988766665667877754
No 288
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=31.09 E-value=3.4e+02 Score=23.28 Aligned_cols=38 Identities=13% Similarity=0.116 Sum_probs=25.6
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeee
Q 006256 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (653)
Q Consensus 522 ~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~ 562 (653)
++|+||+|++.. +.+-...-+...--++++..+||+|+
T Consensus 102 ~~dliv~G~~~~---~~~~~~~~gs~~~~l~~~~~~pVlvv 139 (140)
T PF00582_consen 102 NADLIVMGSRGR---SGLERLLFGSVAEKLLRHAPCPVLVV 139 (140)
T ss_dssp TCSEEEEESSST---TSTTTSSSHHHHHHHHHHTSSEEEEE
T ss_pred cceeEEEeccCC---CCccCCCcCCHHHHHHHcCCCCEEEe
Confidence 699999999882 22222233444455677888999986
No 289
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=30.98 E-value=1.3e+02 Score=30.86 Aligned_cols=101 Identities=15% Similarity=0.058 Sum_probs=58.1
Q ss_pred EEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEE--Ecc-chHHHHhhhc-cEEEEcceeE
Q 006256 458 LLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTY--THI-NAISYIIHEV-TRVFLGASSV 533 (653)
Q Consensus 458 ILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~--I~D-sAv~~iM~~V-d~VllGAdaI 533 (653)
||+.|.+.-|..-|.....+ ...+|+.++..+....... .++.... +.| ..+...+..+ |.||-=|-..
T Consensus 3 ILVtG~tGfiG~~l~~~L~~-~g~~V~~~~r~~~~~~~~~------~~~~~~~~d~~~~~~~~~~~~~~~d~vih~aa~~ 75 (314)
T COG0451 3 ILVTGGAGFIGSHLVERLLA-AGHDVRGLDRLRDGLDPLL------SGVEFVVLDLTDRDLVDELAKGVPDAVIHLAAQS 75 (314)
T ss_pred EEEEcCcccHHHHHHHHHHh-CCCeEEEEeCCCccccccc------cccceeeecccchHHHHHHHhcCCCEEEEccccC
Confidence 77777665554444433322 1556666664433222111 2222221 223 4556666667 7777655544
Q ss_pred ecCCC---------eecccchHHHHHHHhhCCCCeeeeccc
Q 006256 534 LSNGT---------VCSRVGTACVAMVAYGFHIPVLVCCEA 565 (653)
Q Consensus 534 laNG~---------V~NKiGT~~lAl~Ak~~~VPVyV~aet 565 (653)
...+. -.|-.||..+.-+|+..+++-+|.+.+
T Consensus 76 ~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~~~~v~~ss 116 (314)
T COG0451 76 SVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFASS 116 (314)
T ss_pred chhhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCC
Confidence 43333 588999999999999988877776554
No 290
>PRK06460 hypothetical protein; Provisional
Probab=30.96 E-value=5.2e+02 Score=28.34 Aligned_cols=58 Identities=14% Similarity=0.020 Sum_probs=28.4
Q ss_pred HHHhCCCCEEEEccc---hHHHHh-hhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 500 RLVRKGLSCTYTHIN---AISYII-HEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 500 eL~~~GI~vT~I~Ds---Av~~iM-~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
.+...|+.++++... .+..+. +++..|++ ..---..|.+... -.++-+|+.|+++|+|
T Consensus 104 ~~~~~G~~v~~~~~~~~~~l~~~~~~~tklV~l-~sp~NPtG~v~d~---~~I~~la~~~g~~viv 165 (376)
T PRK06460 104 YLKNWGVNVDASNPGSDNIIEKAKSKRYDVVFV-ENITNPLLRVVDI---TELSKVCKENGSILIV 165 (376)
T ss_pred HHHhhCcEEEEECCCCHHHHHHhcCCCceEEEE-ECCCCCCCcccCH---HHHHHHHHHcCCEEEE
Confidence 345567776666322 122222 23445555 1111223544443 2466678888876654
No 291
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=30.69 E-value=2.9e+02 Score=28.73 Aligned_cols=95 Identities=9% Similarity=0.013 Sum_probs=61.0
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcceeE
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSV 533 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAdaI 533 (653)
.|..||..|.+.+-.+=+..+.+.|-.++||-.+-.|..+ .|.+.| .++++.-.--...+..+++||...|
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~------~l~~~~-~i~~~~r~~~~~dl~g~~LViaATd-- 94 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFL------DLKKYG-NLKLIKGNYDKEFIKDKHLIVIATD-- 94 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHH------HHHhCC-CEEEEeCCCChHHhCCCcEEEECCC--
Confidence 4678999999987655556666778888888766544332 244433 2555543332333456777776654
Q ss_pred ecCCCeecccchHHHHHHHhhCCCCeeeecc
Q 006256 534 LSNGTVCSRVGTACVAMVAYGFHIPVLVCCE 564 (653)
Q Consensus 534 laNG~V~NKiGT~~lAl~Ak~~~VPVyV~ae 564 (653)
++.=...++-.|++++++|.++..
T Consensus 95 -------D~~vN~~I~~~a~~~~~lvn~vd~ 118 (223)
T PRK05562 95 -------DEKLNNKIRKHCDRLYKLYIDCSD 118 (223)
T ss_pred -------CHHHHHHHHHHHHHcCCeEEEcCC
Confidence 222234688899999999998765
No 292
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=30.62 E-value=60 Score=37.34 Aligned_cols=77 Identities=12% Similarity=0.123 Sum_probs=40.9
Q ss_pred EEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHH-HHHHHhCCCCEEEEccchHHHHhh--hccEEEEcceeE
Q 006256 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-LRRLVRKGLSCTYTHINAISYIIH--EVTRVFLGASSV 533 (653)
Q Consensus 457 vILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~L-a~eL~~~GI~vT~I~DsAv~~iM~--~Vd~VllGAdaI 533 (653)
.||..|.+.-...+...+.+..+..+||++.+.+ +-|... +......-+.+.+.....+..+.+ ++|.||+|.+.-
T Consensus 2 kVLviG~Ggrehal~~~l~~s~~g~~v~~~~g~~-Npg~~~~~~~~~~~~~~~~~~d~~~l~~~a~~~~id~Vi~g~E~~ 80 (486)
T PRK05784 2 KVLLVGDGAREHALAEALEKSTKGYKVYALSSYL-NPGINSVVKATGGEYFIGNINSPEEVKKVAKEVNPDLVVIGPEEP 80 (486)
T ss_pred EEEEECCchhHHHHHHHHHhCCCCCEEEEEECCC-ChhheeecccccCceEecCCCCHHHHHHHHHHhCCCEEEECCchH
Confidence 6899998876544444555544567999986633 434422 111111001111111233444444 589999998764
Q ss_pred e
Q 006256 534 L 534 (653)
Q Consensus 534 l 534 (653)
+
T Consensus 81 l 81 (486)
T PRK05784 81 L 81 (486)
T ss_pred H
Confidence 4
No 293
>TIGR00746 arcC carbamate kinase. The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.
Probab=30.52 E-value=3.1e+02 Score=29.95 Aligned_cols=30 Identities=20% Similarity=0.357 Sum_probs=21.0
Q ss_pred HHHHHHHHhccCC-CEEEEeCChHHHHHHHH
Q 006256 443 VIVKHAVTKIRDG-DVLLTYGSSSAVEMILQ 472 (653)
Q Consensus 443 ~Ia~~a~~~I~dG-dvILT~g~Ss~Ve~vL~ 472 (653)
.++++.++++..| .+|+|||++-.|...+.
T Consensus 30 ~~a~~ia~l~~~g~~vviv~gngpqvG~~~l 60 (310)
T TIGR00746 30 QTAPQIAKLIKRGYELVITHGNGPQVGNLLL 60 (310)
T ss_pred HHHHHHHHHHHCCCEEEEEECChHHHHHHHh
Confidence 3455566677654 89999999998855443
No 294
>PRK08064 cystathionine beta-lyase; Provisional
Probab=30.44 E-value=5.4e+02 Score=28.39 Aligned_cols=97 Identities=14% Similarity=0.159 Sum_probs=49.7
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchH-HHHH-HHHHhCCCCEEEEccchHHHH---hh-hccEEEEc
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEG-KLLL-RRLVRKGLSCTYTHINAISYI---IH-EVTRVFLG 529 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG-~~La-~eL~~~GI~vT~I~DsAv~~i---M~-~Vd~VllG 529 (653)
..|++-+.+.++..+|. +.+.|. +|++. .|.+.| ..+. ..+...|+.++++....+..+ +. +..+|++
T Consensus 71 ~~v~~~sG~~ai~~~l~-~l~~Gd--~Vlv~--~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~~l~~~tklV~l- 144 (390)
T PRK08064 71 KGFAFASGMAAISTAFL-LLSKGD--HVLIS--EDVYGGTYRMITEVLSRFGIEHTFVDMTNLEEVAQNIKPNTKLFYV- 144 (390)
T ss_pred CeEEECCHHHHHHHHHH-HhCCCC--EEEEc--cCccchHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCCceEEEE-
Confidence 34554333345655554 444444 56664 455544 2333 456778999999864323322 32 3444444
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 530 AdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
..---..|.+.. -..++-+|+.+++.|+|
T Consensus 145 ~~p~NptG~~~d---l~~I~~la~~~g~~vvv 173 (390)
T PRK08064 145 ETPSNPLLKVTD---IRGVVKLAKAIGCLTFV 173 (390)
T ss_pred ECCCCCCcEecc---HHHHHHHHHHcCCEEEE
Confidence 111112233321 23567788999987665
No 295
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=30.43 E-value=5.9e+02 Score=27.98 Aligned_cols=101 Identities=12% Similarity=0.174 Sum_probs=48.7
Q ss_pred CCEEEEeCChHHHHHHHHHH-H-HcCCeeEEEEeCCCCCchHHHHH-HHH-HhCCCCEEEEccc--------hHHHHhh-
Q 006256 455 GDVLLTYGSSSAVEMILQHA-H-ELGKQFRVVIVDSRPKHEGKLLL-RRL-VRKGLSCTYTHIN--------AISYIIH- 521 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A-~-e~gk~f~ViV~ESRP~~EG~~La-~eL-~~~GI~vT~I~Ds--------Av~~iM~- 521 (653)
.++|+|.|.+..+..+++.. . .....-+|++.+ +.+.+.... ..+ ...|+.+.++... .+...+.
T Consensus 95 ~~v~~t~g~t~al~~i~~~~~~~~~~~gd~vl~~~--~~~~s~~~~~~~~a~~~g~~v~~v~~~~~~~~~~~~l~~~i~~ 172 (424)
T PLN02855 95 REIVFTRNATEAINLVAYTWGLANLKPGDEVILSV--AEHHSNIVPWQLVAQKTGAVLKFVGLTPDEVLDVEQLKELLSE 172 (424)
T ss_pred CEEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECC--CccHHHHHHHHHHHHHcCCEEEEEecCCCCCcCHHHHHHHhcc
Confidence 46777776666765555431 0 112223566544 233322222 223 4568888777421 1222222
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 522 ~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
+.++|++- +.-...|.++. -..|+-+|+.|++.|+|
T Consensus 173 ~t~lv~i~-~~~n~tG~~~~---~~~I~~l~~~~g~~viv 208 (424)
T PLN02855 173 KTKLVATH-HVSNVLGSILP---VEDIVHWAHAVGAKVLV 208 (424)
T ss_pred CceEEEEe-CccccccccCC---HHHHHHHHHHcCCEEEE
Confidence 33444333 22223444433 13567788888876665
No 296
>TIGR01469 cobA_cysG_Cterm uroporphyrin-III C-methyltransferase. This model represents enzymes, or enzyme domains, with uroporphyrin-III C-methyltransferase activity. This enzyme catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). Cobalamin contains cobalt while siroheme contains iron. Siroheme is a cofactor for nitrite and sulfite reductases and therefore plays a role in cysteine biosynthesis; many members of this family are CysG, siroheme synthase, with an additional N-terminal domain and with additional oxidation and iron insertion activities.
Probab=30.34 E-value=5.8e+02 Score=25.68 Aligned_cols=54 Identities=15% Similarity=0.131 Sum_probs=37.8
Q ss_pred HHHHHHHHHHcCCeeEEEEeCCCCCch--HHHHHHHHHhCCCCEEEEc-cchHHHHhh
Q 006256 467 VEMILQHAHELGKQFRVVIVDSRPKHE--GKLLLRRLVRKGLSCTYTH-INAISYIIH 521 (653)
Q Consensus 467 Ve~vL~~A~e~gk~f~ViV~ESRP~~E--G~~La~eL~~~GI~vT~I~-DsAv~~iM~ 521 (653)
+...+....++|++ -|+++..-|.+- |..|.+.|.+.|+++++|+ .+++.+++.
T Consensus 66 ~~~~i~~~~~~g~~-V~~l~~GDP~~~~~~~~l~~~~~~~~~~v~viPGiSs~~~a~a 122 (236)
T TIGR01469 66 INRLLVELAREGKK-VVRLKGGDPFVFGRGGEEAEALAEAGIPFEVVPGVTSAIAAAA 122 (236)
T ss_pred HHHHHHHHHHCCCe-EEEEeCcCcccccCHHHHHHHHHHCCCCEEEECCccHHHHHHH
Confidence 33444444445654 445678889774 6678888999999999998 677777765
No 297
>PRK08960 hypothetical protein; Provisional
Probab=30.25 E-value=2.9e+02 Score=29.92 Aligned_cols=95 Identities=11% Similarity=0.066 Sum_probs=50.3
Q ss_pred ccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc-cc------hHHHHhh---
Q 006256 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-IN------AISYIIH--- 521 (653)
Q Consensus 452 I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~-Ds------Av~~iM~--- 521 (653)
+...++++|.|.+.++..++....+.| -+|+|. .|.+.+...... ..|..+..+. |. .+..+.+
T Consensus 90 ~~~~~i~it~G~~~al~~~~~~~~~~g--d~vlv~--~p~y~~~~~~~~--~~g~~~~~v~~~~~~~~~~d~~~l~~~~~ 163 (387)
T PRK08960 90 VDPERILVTPGGSGALLLASSLLVDPG--KHWLLA--DPGYPCNRHFLR--LVEGAAQLVPVGPDSRYQLTPALVERHWN 163 (387)
T ss_pred CChhhEEEccCcHHHHHHHHHHhcCCC--CEEEEc--CCCCcchHHHHH--hcCCeEEEEecCcccCCCCCHHHHHHHhC
Confidence 445678889998888866555444333 355553 466655443333 3455555543 21 1223322
Q ss_pred -hccEEEEcceeEecCCCeecccchH-------HHHHHHhhCCCCee
Q 006256 522 -EVTRVFLGASSVLSNGTVCSRVGTA-------CVAMVAYGFHIPVL 560 (653)
Q Consensus 522 -~Vd~VllGAdaIlaNG~V~NKiGT~-------~lAl~Ak~~~VPVy 560 (653)
+..+++ +.| .-|..|+. .++-+|++|++.++
T Consensus 164 ~~~~~i~------i~~--p~NPtG~~~~~~~~~~l~~~~~~~~~~li 202 (387)
T PRK08960 164 ADTVGAL------VAS--PANPTGTLLSRDELAALSQALRARGGHLV 202 (387)
T ss_pred ccceEEE------EEC--CCCCCCcCcCHHHHHHHHHHHHHcCCEEE
Confidence 222332 222 24677764 46667888887654
No 298
>PRK06207 aspartate aminotransferase; Provisional
Probab=30.15 E-value=5.4e+02 Score=28.28 Aligned_cols=92 Identities=16% Similarity=0.208 Sum_probs=50.0
Q ss_pred CCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc-------------chHHHHhh
Q 006256 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-------------NAISYIIH 521 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D-------------sAv~~iM~ 521 (653)
.++++|.|.+.++..++....+.| -+|+|. .|.+.+.. ..+...|..+..+.. ..+-..+.
T Consensus 103 ~~I~it~Ga~~al~~~~~~l~~~G--d~Vlv~--~P~y~~~~--~~~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~ 176 (405)
T PRK06207 103 DELIITPGTQGALFLAVAATVARG--DKVAIV--QPDYFANR--KLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFK 176 (405)
T ss_pred CCEEEeCCcHHHHHHHHHHhcCCC--CEEEEe--CCCchhHH--HHHHHcCCEEEEEeccccCcccCCCcCHHHHHHhhh
Confidence 578999998888866666554434 345543 36665543 333445666554431 12222222
Q ss_pred -hccEEEEcceeEecCCCeecccchHH-------HHHHHhhCCCCee
Q 006256 522 -EVTRVFLGASSVLSNGTVCSRVGTAC-------VAMVAYGFHIPVL 560 (653)
Q Consensus 522 -~Vd~VllGAdaIlaNG~V~NKiGT~~-------lAl~Ak~~~VPVy 560 (653)
++.+|++ .|= -|..|+.. ++-+|+.|++.++
T Consensus 177 ~~~k~v~l------~~P--~NPTG~~~s~e~l~~l~~~a~~~~~~iI 215 (405)
T PRK06207 177 AGVRVFLF------SNP--NNPAGVVYSAEEIAQIAALARRYGATVI 215 (405)
T ss_pred hcCeEEEE------CCC--CCCCCcCCCHHHHHHHHHHHHHcCCEEE
Confidence 3444433 221 26666653 6667888887655
No 299
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=30.06 E-value=94 Score=34.69 Aligned_cols=80 Identities=23% Similarity=0.218 Sum_probs=42.7
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCc--hHHHHHHHHH--hCCCC-EEEEccchHHHHhh--hccEEEE
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKH--EGKLLLRRLV--RKGLS-CTYTHINAISYIIH--EVTRVFL 528 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~--EG~~La~eL~--~~GI~-vT~I~DsAv~~iM~--~Vd~Vll 528 (653)
.+||..|.|..-..+++.|.+.| ++|+++.+.+.. .+..++.+.. .-+.. -.|+...++-.+.. ++|.|+-
T Consensus 3 k~iLi~g~g~~a~~i~~aa~~~G--~~vv~~~~~~d~~a~~~~~ad~~~~~~~~~~~~~y~d~~~l~~~a~~~~id~I~p 80 (451)
T PRK08591 3 DKILIANRGEIALRIIRACKELG--IKTVAVHSTADRDALHVQLADEAVCIGPAPSKKSYLNIPAIISAAEITGADAIHP 80 (451)
T ss_pred ceEEEECCCHHHHHHHHHHHHcC--CeEEEEcChhhccCCCHhHCCEEEEeCCCCcccccCCHHHHHHHHHHhCCCEEEE
Confidence 36899999987778899998766 456666444332 3333331110 00000 02222123333322 5898888
Q ss_pred cceeEecCC
Q 006256 529 GASSVLSNG 537 (653)
Q Consensus 529 GAdaIlaNG 537 (653)
|.+-+..|+
T Consensus 81 ~~~~~~e~~ 89 (451)
T PRK08591 81 GYGFLSENA 89 (451)
T ss_pred CCCccccCH
Confidence 875555554
No 300
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=30.02 E-value=1.3e+02 Score=32.84 Aligned_cols=176 Identities=15% Similarity=0.097 Sum_probs=91.8
Q ss_pred cchHHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhcCCCc-cHHHHHH
Q 006256 345 CGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISL-SESEAKA 423 (653)
Q Consensus 345 ~Gsnaraiaml~a~~~vI~dy~~p~~~~~~rdL~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~~~~~~~-~~~eaK~ 423 (653)
+|....++||+.+.+-.---...|+ +++.+-...|+.+...|.-+....-+|..+++++++..++.+... -..+...
T Consensus 70 SGNTGI~LA~vaa~~Gy~~iivmP~--~~S~er~~~l~a~GAevi~t~~~~g~~~~a~~~a~el~~~~p~~~~~~~Qf~N 147 (300)
T COG0031 70 SGNTGIALAMVAAAKGYRLIIVMPE--TMSQERRKLLRALGAEVILTPGAPGNMKGAIERAKELAAEIPGYAVWLNQFEN 147 (300)
T ss_pred CChHHHHHHHHHHHcCCcEEEEeCC--CCCHHHHHHHHHcCCEEEEcCCCCCchHHHHHHHHHHHHhCCCceEchhhcCC
Confidence 5666667777777654211111243 355666666777766666665544558889999888776664311 1111100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCC--CCch--------
Q 006256 424 TLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSR--PKHE-------- 493 (653)
Q Consensus 424 ~L~e~I~~fi~E~i~~a~~~Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESR--P~~E-------- 493 (653)
-.--.+.. ......|.+.....+ .-.|.-.|-+-++.++-+...++...++++.+|-. |.+.
T Consensus 148 paN~~aH~------~tT~~EI~~~~~g~~--d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~S~~~~~G~g~~~i 219 (300)
T COG0031 148 PANPEAHY------ETTGPEIWQQTDGKV--DAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGSVLLSGGEGPHKI 219 (300)
T ss_pred CccHHHHH------hhhHHHHHHHhCCCC--CEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCCCcccCCCCCCccc
Confidence 00000000 011122333332221 23455556666777888888888888999999753 3332
Q ss_pred -H--HHHH-HHHHhCCCC-EEEEccchHHHHhh---hccEEEEcc
Q 006256 494 -G--KLLL-RRLVRKGLS-CTYTHINAISYIIH---EVTRVFLGA 530 (653)
Q Consensus 494 -G--~~La-~eL~~~GI~-vT~I~DsAv~~iM~---~Vd~VllGA 530 (653)
| ..+. ..|...=|+ +..|.|..+...++ +-.-+++|.
T Consensus 220 ~GIG~~~ip~~~~~~~iD~v~~V~d~~A~~~~r~La~~eGilvG~ 264 (300)
T COG0031 220 EGIGAGFVPENLDLDLIDEVIRVSDEEAIATARRLAREEGLLVGI 264 (300)
T ss_pred CCCCCCcCCcccccccCceEEEECHHHHHHHHHHHHHHhCeeecc
Confidence 2 1222 122222232 45566766555555 457777775
No 301
>PRK07777 aminotransferase; Validated
Probab=29.91 E-value=5.4e+02 Score=27.79 Aligned_cols=50 Identities=20% Similarity=0.282 Sum_probs=28.9
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEE
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT 511 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I 511 (653)
.+|+|.|.+.++..++......| -+|++. .|.+.+...+ +...|..+..+
T Consensus 87 ~i~~t~G~~~al~~~~~~~~~~g--d~vli~--~p~y~~~~~~--~~~~g~~~~~~ 136 (387)
T PRK07777 87 EVLVTVGATEAIAAAVLGLVEPG--DEVLLI--EPYYDSYAAV--IAMAGAHRVPV 136 (387)
T ss_pred cEEEeCCcHHHHHHHHHHhcCCC--CEEEEe--CCCchhhHHH--HHHCCCEEEEe
Confidence 58889988888866665443323 355553 3666655433 33456655444
No 302
>PRK08361 aspartate aminotransferase; Provisional
Probab=29.90 E-value=3.7e+02 Score=29.20 Aligned_cols=103 Identities=15% Similarity=0.148 Sum_probs=50.7
Q ss_pred ccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc-cc------hHHHHhh---
Q 006256 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-IN------AISYIIH--- 521 (653)
Q Consensus 452 I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~-Ds------Av~~iM~--- 521 (653)
+...++++|.|.+.++..++....+.| -+|++.+ |.+.+.. ..+...|+++..+. |. .+..+..
T Consensus 91 ~~~~~i~~t~G~~~al~~~~~~l~~~g--~~Vlv~~--p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~ 164 (391)
T PRK08361 91 VDVDNVIVTAGAYEATYLAFESLLEEG--DEVIIPD--PAFVCYV--EDAKIAEAKPIRIPLREENEFQPDPDELLELIT 164 (391)
T ss_pred CCcccEEEeCChHHHHHHHHHHhcCCC--CEEEEcC--CCCcccH--HHHHHcCCEEEEEecCCccCCCCCHHHHHHhcc
Confidence 444578888887777765555443333 3566544 5554432 33444677776663 21 1222322
Q ss_pred -hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 522 -~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
++..|++- .---..|.++..-=-..++-+|++|++.+++
T Consensus 165 ~~~~~v~i~-~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~ 204 (391)
T PRK08361 165 KRTRMIVIN-YPNNPTGATLDKEVAKAIADIAEDYNIYILS 204 (391)
T ss_pred cccEEEEEe-CCCCCCCcCcCHHHHHHHHHHHHHcCeEEEE
Confidence 23333332 1111123333322124466678888885443
No 303
>PRK15456 universal stress protein UspG; Provisional
Probab=29.90 E-value=1.6e+02 Score=27.01 Aligned_cols=37 Identities=27% Similarity=0.339 Sum_probs=23.8
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeee
Q 006256 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (653)
Q Consensus 522 ~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~ 562 (653)
++|+|++|++. ...+.. -+|+-.-. +.++.++||+|+
T Consensus 105 ~~DLIVmG~~g-~~~~~~--llGS~a~~-v~~~a~~pVLvV 141 (142)
T PRK15456 105 GADVVVIGSRN-PSISTH--LLGSNASS-VIRHANLPVLVV 141 (142)
T ss_pred CCCEEEEcCCC-CCccce--ecCccHHH-HHHcCCCCEEEe
Confidence 68999999886 222222 24665444 467778999886
No 304
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=29.83 E-value=5.2e+02 Score=26.63 Aligned_cols=66 Identities=23% Similarity=0.254 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHH---cCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcceeEec
Q 006256 464 SSAVEMILQHAHE---LGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLS 535 (653)
Q Consensus 464 Ss~Ve~vL~~A~e---~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAdaIla 535 (653)
+...+.++++|++ ...++.|=|.=|. +|.+.++.|.+.||+|..+..-++...+--.. .||+-|..
T Consensus 60 ~~~~~~mi~~a~~l~~~~~~i~iKIP~T~---~Gl~A~~~L~~~Gi~v~~T~vfs~~Qa~~Aa~---aGa~yisp 128 (213)
T TIGR00875 60 SLDAEGMVEEAKELAKLAPNIVVKIPMTS---EGLKAVKILKKEGIKTNVTLVFSAAQALLAAK---AGATYVSP 128 (213)
T ss_pred eCCHHHHHHHHHHHHHhCCCeEEEeCCCH---HHHHHHHHHHHCCCceeEEEecCHHHHHHHHH---cCCCEEEe
Confidence 4445666777664 3444444444443 89998999999999998876655544443111 27776665
No 305
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=29.77 E-value=2.2e+02 Score=32.73 Aligned_cols=66 Identities=20% Similarity=0.254 Sum_probs=44.9
Q ss_pred HHHHHHHhCCCCEEEEccch--------HHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhh----CCCCeeeec
Q 006256 496 LLLRRLVRKGLSCTYTHINA--------ISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG----FHIPVLVCC 563 (653)
Q Consensus 496 ~La~eL~~~GI~vT~I~DsA--------v~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~----~~VPVyV~a 563 (653)
+.++.|.+.||++++|.... +-...++...|| ++.+|....-+|+...+.++.+ ...||.-++
T Consensus 357 ~Aa~~L~~~GI~~~VIdl~tlkPlD~~~i~~sv~kt~~vv-----tvEE~~~~gGlG~~va~~l~e~~f~~l~~pv~ri~ 431 (464)
T PRK11892 357 KAAEELAKEGIDAEVIDLRTIRPMDTETIVESVKKTNRLV-----TVEEGWPQSGVGAEIAARVMEQAFDYLDAPVLRVT 431 (464)
T ss_pred HHHHHHHhcCCCEEEEECCCCCcCCHHHHHHHHHhcCeEE-----EEeCCCcCCcHHHHHHHHHHHhCccccCCCeEEec
Confidence 34456777788887775433 333344666664 5678888888999999998887 367888776
Q ss_pred ccc
Q 006256 564 EAY 566 (653)
Q Consensus 564 ety 566 (653)
-..
T Consensus 432 ~~d 434 (464)
T PRK11892 432 GKD 434 (464)
T ss_pred cCC
Confidence 533
No 306
>PRK07589 ornithine cyclodeaminase; Validated
Probab=29.47 E-value=4.5e+02 Score=29.02 Aligned_cols=99 Identities=14% Similarity=0.139 Sum_probs=60.0
Q ss_pred HHHHHhcc--CCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhc
Q 006256 446 KHAVTKIR--DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEV 523 (653)
Q Consensus 446 ~~a~~~I~--dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~V 523 (653)
-.+.+++. +-.+++.+|.+..-..-++.+..-....+|+|. +|=...-..|+.++.+.|+++....+ +.....++
T Consensus 118 ala~~~Lar~da~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~-~r~~~~a~~~~~~~~~~~~~v~~~~~--~~~av~~A 194 (346)
T PRK07589 118 ALAAKYLARPDSRTMALIGNGAQSEFQALAFKALLGIEEIRLY-DIDPAATAKLARNLAGPGLRIVACRS--VAEAVEGA 194 (346)
T ss_pred HHHHHHhccCCCcEEEEECCcHHHHHHHHHHHHhCCceEEEEE-eCCHHHHHHHHHHHHhcCCcEEEeCC--HHHHHhcC
Confidence 34445553 457899999986443333333222233445554 44333445678888888888887543 45666789
Q ss_pred cEEEEcc---e-------eEecCCCeecccchHH
Q 006256 524 TRVFLGA---S-------SVLSNGTVCSRVGTAC 547 (653)
Q Consensus 524 d~VllGA---d-------aIlaNG~V~NKiGT~~ 547 (653)
|.|+.-. + ..+..|..+|-+|++.
T Consensus 195 DIIvtaT~S~~~~Pvl~~~~lkpG~hV~aIGs~~ 228 (346)
T PRK07589 195 DIITTVTADKTNATILTDDMVEPGMHINAVGGDC 228 (346)
T ss_pred CEEEEecCCCCCCceecHHHcCCCcEEEecCCCC
Confidence 9888743 2 2446788888888765
No 307
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=29.44 E-value=4.3e+02 Score=30.62 Aligned_cols=77 Identities=21% Similarity=0.310 Sum_probs=46.3
Q ss_pred ccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-------------HH---HHHHHhCCCCEEEEc---
Q 006256 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-------------LL---LRRLVRKGLSCTYTH--- 512 (653)
Q Consensus 452 I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~-------------~L---a~eL~~~GI~vT~I~--- 512 (653)
+..|+.|+.+|-+.+=..+...+.+.|. +|+|+|.++...|. .+ ...+.+.|+.+.+-+
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~~G~--~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~ 211 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRRMGH--AVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVG 211 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC--eEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEEC
Confidence 4578999999998753244445555554 68889877654331 11 234667888765522
Q ss_pred -cchHHHHhhhccEEEEcc
Q 006256 513 -INAISYIIHEVTRVFLGA 530 (653)
Q Consensus 513 -DsAv~~iM~~Vd~VllGA 530 (653)
|-....+....|.||+.+
T Consensus 212 ~~~~~~~~~~~~D~Vi~At 230 (564)
T PRK12771 212 EDITLEQLEGEFDAVFVAI 230 (564)
T ss_pred CcCCHHHHHhhCCEEEEee
Confidence 212333444688888854
No 308
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=29.44 E-value=6.5e+02 Score=30.36 Aligned_cols=100 Identities=8% Similarity=0.064 Sum_probs=69.3
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHcCC-eeEEEEeCCCCCchHH-----HHHHHHHhCCCCEEEEc---cchHHHHhhhcc
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHELGK-QFRVVIVDSRPKHEGK-----LLLRRLVRKGLSCTYTH---INAISYIIHEVT 524 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~gk-~f~ViV~ESRP~~EG~-----~La~eL~~~GI~vT~I~---DsAv~~iM~~Vd 524 (653)
....|+..|-+.....++..+.+.|- .|+.++.|.-+.+-++ ++++. .+.+|+++.|. +..+--++...|
T Consensus 128 R~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v~SNlnRIgEl~e~A~~-~n~~v~v~~i~~~~~~dl~ev~~~~D 206 (637)
T TIGR03693 128 RNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAEEHALDRIHELAEIAEE-TDDALLVQEIDFAEDQHLHEAFEPAD 206 (637)
T ss_pred hcccEEEEecCchHHHHHHHHHhcCCCcEEEEeccccchhhhHHHHHHHHHHH-hCCCCceEeccCCcchhHHHhhcCCc
Confidence 56789999998877777888888885 5888888877765552 23333 23578888886 455666667888
Q ss_pred EEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 525 ~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
.||.-+|- ++.-....+--.|...|.|++-
T Consensus 207 iVi~vsDd-------y~~~~Lr~lN~acvkegk~~IP 236 (637)
T TIGR03693 207 WVLYVSDN-------GDIDDLHALHAFCKEEGKGFIP 236 (637)
T ss_pred EEEEECCC-------CChHHHHHHHHHHHHcCCCeEE
Confidence 88876652 2223466677788888955543
No 309
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=29.43 E-value=9.1e+02 Score=27.68 Aligned_cols=141 Identities=13% Similarity=0.155 Sum_probs=68.6
Q ss_pred ccHHHHHHHHHHHHHhc-CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEeCChHHHHHHHHHH
Q 006256 396 VSMGNAIRFLKSQIAKI-PISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHA 474 (653)
Q Consensus 396 VsmgNAIr~lk~~I~~~-~~~~~~~eaK~~L~e~I~~fi~E~i~~a~~~Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A 474 (653)
+.+.+.-++|+...+-. ....++ .+.+..+.||++......+.|.++ .+++ .|..|..++.+..+..+.+.+
T Consensus 271 ~G~~~T~~~l~~la~~~~~~~~~~-----~~~~~~e~~i~~e~~~~~~~l~~~-~~~l-~Gk~vaI~~~~~~~~~la~~l 343 (475)
T PRK14478 271 YGIEDTSDSLRQIARLLVERGADA-----ELVERTEALIAEEEAKAWAALEPY-RPRL-EGKRVLLYTGGVKSWSVVKAL 343 (475)
T ss_pred CcHHHHHHHHHHHHHHHhhcCCCh-----HHHHHHHHHHHHHHHHHHHHHHHH-HHHh-CCCEEEEEcCCchHHHHHHHH
Confidence 56666666665543322 011111 122333444444333344444433 3444 477777777665444555556
Q ss_pred HHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc---hHHHHhhh--ccEEEEcceeEecCCCeecccchHHHH
Q 006256 475 HELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---AISYIIHE--VTRVFLGASSVLSNGTVCSRVGTACVA 549 (653)
Q Consensus 475 ~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds---Av~~iM~~--Vd~VllGAdaIlaNG~V~NKiGT~~lA 549 (653)
.+.|-....+++......+=.. .+.|... .+.++.|. .+..++.+ +|++|-+ ..-.
T Consensus 344 ~ElGm~v~~~~~~~~~~~~~~~-l~~~~~~--~~~v~~d~~~~e~~~~i~~~~pDliig~----------------s~~~ 404 (475)
T PRK14478 344 QELGMEVVGTSVKKSTDEDKER-IKELMGP--DAHMIDDANPRELYKMLKEAKADIMLSG----------------GRSQ 404 (475)
T ss_pred HHCCCEEEEEEEECCCHHHHHH-HHHHcCC--CcEEEeCCCHHHHHHHHhhcCCCEEEec----------------Cchh
Confidence 6778776666665543322222 3333332 34555553 23333443 4544433 1123
Q ss_pred HHHhhCCCCeeee
Q 006256 550 MVAYGFHIPVLVC 562 (653)
Q Consensus 550 l~Ak~~~VPVyV~ 562 (653)
-+|+..+||++..
T Consensus 405 ~~a~k~giP~~~~ 417 (475)
T PRK14478 405 FIALKAGMPWLDI 417 (475)
T ss_pred hhhhhcCCCEEEc
Confidence 5788899999844
No 310
>PF12842 DUF3819: Domain of unknown function (DUF3819); InterPro: IPR024557 The Ccr4-Not complex is a global regulator of gene expression that is conserved from yeast to human. It affects genes positively and negatively and is thought to regulate transcription factor IID function. In Saccharomyces cerevisiae, it exists in two prominent forms and consists of at least nine core subunits: the five Not proteins (Not1p to Not5p), Caf1p, Caf40p, Caf130p and Ccr4p []. The Ccr4-Not complex regulates many different cellular functions, including RNA degradation and transcription initiation. It may be a regulatory platform that senses nutrient levels and stress []. Caf1p and Ccr4p, are directly involved in mRNA deadenylation, and Caf1p is associated with Dhh1p, a putative RNA helicase thought to be a component of the decapping complex []. Pop2, a component of the Ccr4-Not complex, functions as a deadenylase []. This entry represents a domain of unknown function found in the Not1 subunit of the CCR4-Not complex.
Probab=28.94 E-value=5.4e+02 Score=24.93 Aligned_cols=93 Identities=27% Similarity=0.432 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHhcCCCCccchHH----HHHHHHHHHHHHHHhcC-CccccHHHHHHHHHHHHHhcCCCccHHHHHHHH
Q 006256 351 CIAMLQAFQEAIRDYSTPPAKTLSR----DLTAKISSYVSFLIDCR-PLSVSMGNAIRFLKSQIAKIPISLSESEAKATL 425 (653)
Q Consensus 351 aiaml~a~~~vI~dy~~p~~~~~~r----dL~~~L~~~i~~L~~aR-PtsVsmgNAIr~lk~~I~~~~~~~~~~eaK~~L 425 (653)
.+|...+-.-+.+||.+-++....+ .+...|..... |..|| |+-.+|.|-++.+....... . ..+..
T Consensus 29 ~IA~~Tt~~LV~KDFa~E~De~~~r~aa~~Mv~~LA~sLa-lvTcrepL~~~i~~~l~~~l~~~~~~----~---~~~~~ 100 (147)
T PF12842_consen 29 TIASITTEELVKKDFATEPDENKMRRAAHNMVRSLAGSLA-LVTCREPLRESIQNNLRSLLSQLNGS----T---EQELP 100 (147)
T ss_pred HHHHHHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCC----c---hhhhH
Confidence 4666666666678998744332211 22222322222 24555 66677776665554422111 1 11222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006256 426 HSDIERFINEKIILADRVIVKHAVTK 451 (653)
Q Consensus 426 ~e~I~~fi~E~i~~a~~~Ia~~a~~~ 451 (653)
.+.+...+++.++.++..|-+.+.++
T Consensus 101 e~~i~~~~~dNlel~~~~Iek~a~ek 126 (147)
T PF12842_consen 101 EQAIQQIVNDNLELACAFIEKAAMEK 126 (147)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33444444555555655555444443
No 311
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=28.84 E-value=9.4e+02 Score=27.66 Aligned_cols=109 Identities=15% Similarity=0.183 Sum_probs=64.4
Q ss_pred Hhcc--CCCEEEEeCChHHHHHHHHHHHH-c--CCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhh---
Q 006256 450 TKIR--DGDVLLTYGSSSAVEMILQHAHE-L--GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIH--- 521 (653)
Q Consensus 450 ~~I~--dGdvILT~g~Ss~Ve~vL~~A~e-~--gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~--- 521 (653)
++|. +-|+|+|-+-.....-+|+.-.. . +.+-+|+-+.+.=..-+. -.+.|.+.|+.|||++-.--+.+.-
T Consensus 96 klInAd~~dIiFts~ATEs~Nlvl~~v~~~~~~~~~k~iitl~~eH~~v~~-s~~~l~~~g~~Vt~lpv~~~~~~d~~~~ 174 (428)
T KOG1549|consen 96 KLINADPSDIVFTSGATESNNLVLKGVARFFGDKTKKHIITLQTEHPCVLD-SCRALQEEGLEVTYLPVEDSGLVDISKL 174 (428)
T ss_pred HHhCCCCCcEEEeCCchHHHHHHHHHhhccccccccceEEEecccCcchhH-HHHHHHhcCeEEEEeccCccccccHHHH
Confidence 3664 34677777666665555554322 1 223366666655333221 2467899999999998663332221
Q ss_pred ----hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 522 ----EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 522 ----~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
+-+-.+++.+.|..-=++++.+ --|..+|++.+|.|++
T Consensus 175 ~~~i~~~T~lv~I~~Vnn~~gv~~Pv--~EI~~icr~~~v~v~~ 216 (428)
T KOG1549|consen 175 REAIRSKTRLVSIMHVNNEIGVLQPV--KEIVKICREEGVQVHV 216 (428)
T ss_pred HHhcCCCceEEEEEecccCccccccH--HHHHHHhCcCCcEEEe
Confidence 3466777777776554444443 3477899999996665
No 312
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=28.82 E-value=2.3e+02 Score=30.47 Aligned_cols=16 Identities=19% Similarity=0.202 Sum_probs=11.4
Q ss_pred HHHHHHHhhCCCCeee
Q 006256 546 ACVAMVAYGFHIPVLV 561 (653)
Q Consensus 546 ~~lAl~Ak~~~VPVyV 561 (653)
-.++-+|++|++.+++
T Consensus 190 ~~i~~la~~~~~~li~ 205 (393)
T TIGR01822 190 DEICDLADKYDALVMV 205 (393)
T ss_pred HHHHHHHHHcCCEEEE
Confidence 3567788888886654
No 313
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=28.80 E-value=4.8e+02 Score=24.30 Aligned_cols=101 Identities=24% Similarity=0.282 Sum_probs=49.5
Q ss_pred CEEEEeCC---hHHHHHHHHHHHHcCCeeEEEEeCC-CCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcce
Q 006256 456 DVLLTYGS---SSAVEMILQHAHELGKQFRVVIVDS-RPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGAS 531 (653)
Q Consensus 456 dvILT~g~---Ss~Ve~vL~~A~e~gk~f~ViV~ES-RP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAd 531 (653)
|+++-+|- |+++..++... .+.++.++.++. -...+....++++.+.|+++..+....-...-.....+. +.
T Consensus 3 d~~v~lSGG~DSs~ll~l~~~~--~~~~v~~v~~~~g~~~~~~~~~~~~~a~~g~~~~~~~~~~~~~~~~~~~~l~-~~- 78 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLLKEK--YGLNPLAVTVDNGFNSEEAVKNIKNLIKKGLDLDHLVINPEEMKDLQLARFK-AK- 78 (154)
T ss_pred CEEEECCCchhHHHHHHHHHHH--hCCceEEEEeCCCCCCHHHHHHHHHHHHhCCCeEEEecCHHHHHHHHHHHHh-cc-
Confidence 56666765 45553433322 122433333333 223456667777766688876654332211111011110 10
Q ss_pred eEecCCCe---ecccchHHHHHHHhhCCCCeeeecc
Q 006256 532 SVLSNGTV---CSRVGTACVAMVAYGFHIPVLVCCE 564 (653)
Q Consensus 532 aIlaNG~V---~NKiGT~~lAl~Ak~~~VPVyV~ae 564 (653)
.+.. .++.-...+.-+|+.+|+++++.++
T Consensus 79 ----~~~p~~~~~~~~~~~~~~~A~~~g~~~il~G~ 110 (154)
T cd01996 79 ----VGDPCWPCDTAIFTSLYKVALKFGIPLIITGE 110 (154)
T ss_pred ----cCCCChhhhHHHHHHHHHHHHHhCcCEEEeCc
Confidence 1111 2333344566689999999998776
No 314
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=28.80 E-value=2.1e+02 Score=31.94 Aligned_cols=96 Identities=21% Similarity=0.278 Sum_probs=51.4
Q ss_pred ccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc----------chHHHHhh
Q 006256 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI----------NAISYIIH 521 (653)
Q Consensus 452 I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D----------sAv~~iM~ 521 (653)
+...++|+|.|.+..+..++....+.|. +|++. +|.+........ ..|+.+.++.. ..+-.++.
T Consensus 115 ~~~~~v~it~G~~~al~l~~~~l~~~Gd--~Vlv~--~P~y~~y~~~~~--~~g~~~~~~~~~~~~~~~~d~~~l~~~~~ 188 (430)
T PLN00145 115 LSTDDIYLTAGCAQAIEIIMSVLAQPGA--NILLP--RPGYPLYEARAV--FSGLEVRHFDLLPERGWEVDLEGVEALAD 188 (430)
T ss_pred CChhhEEEeCCHHHHHHHHHHHhcCCCC--EEEEc--CCCCccHHHHHH--HcCCEEEEeeCCcccCCcCCHHHHHHHhC
Confidence 3446789999998888666665543333 45554 466655433322 34666665431 12222222
Q ss_pred -hccEEEEcceeEecCCCeecccch-------HHHHHHHhhCCCCeee
Q 006256 522 -EVTRVFLGASSVLSNGTVCSRVGT-------ACVAMVAYGFHIPVLV 561 (653)
Q Consensus 522 -~Vd~VllGAdaIlaNG~V~NKiGT-------~~lAl~Ak~~~VPVyV 561 (653)
+..++ ++.|- -|..|+ ..|+-+|++|++++++
T Consensus 189 ~~~~~i------~i~~P--~NPtG~v~~~~~l~~i~~~a~~~~i~ii~ 228 (430)
T PLN00145 189 ENTVAM------VIINP--NNPCGSVYSYEHLAKIAETARKLGILVIA 228 (430)
T ss_pred cCceEE------EEeCC--CCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 22232 22332 255555 3455668889977664
No 315
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=28.63 E-value=6.5e+02 Score=26.72 Aligned_cols=101 Identities=15% Similarity=0.139 Sum_probs=48.9
Q ss_pred CCCEEEEeCChHHHHHHHHHHHH---c-CCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc-----hHHHHhh---
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHE---L-GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-----AISYIIH--- 521 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e---~-gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds-----Av~~iM~--- 521 (653)
+...|+|.|.+.+...++..+.. . ++.-+|++.+. .+-+ +.+.+...|+++..+... .+..+.+
T Consensus 76 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~~~~--~h~~--~~~~~~~~G~~~~~v~~~~~~~~d~~~l~~~l~ 151 (373)
T TIGR03812 76 DAYGYIVSGGTEANIQAVRAAKNLAREEKRTPNIIVPES--AHFS--FEKAAEMLGLELRYAPLDEDYTVDVKDVEDLID 151 (373)
T ss_pred CCCeEEeccHHHHHHHHHHHHHHHHhccCCCcEEEECCc--chHH--HHHHHHHcCCeEEEEeeCCCCCcCHHHHHHHHh
Confidence 34567777755555444433321 1 22246776552 2222 223345568888777521 1222222
Q ss_pred hcc--EEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeec
Q 006256 522 EVT--RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (653)
Q Consensus 522 ~Vd--~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~a 563 (653)
+-+ .|++.. -...|.+. . --.++-+||+++++++|=+
T Consensus 152 ~~~~~vv~~~~--~~~tG~~~-~--~~~i~~l~~~~~~~livD~ 190 (373)
T TIGR03812 152 DNTIGIVGIAG--TTELGQID-D--IEELSKIALENGIYLHVDA 190 (373)
T ss_pred hCcEEEEEECC--CCCCCccC-C--HHHHHHHHHHcCCeEEEEc
Confidence 212 222221 12344332 1 2357778999998887633
No 316
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=28.29 E-value=2.1e+02 Score=28.41 Aligned_cols=69 Identities=13% Similarity=0.164 Sum_probs=39.8
Q ss_pred HHHhccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEE
Q 006256 448 AVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVF 527 (653)
Q Consensus 448 a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~Vl 527 (653)
+.+++-.|.++++.||+.+=.++-+.++. ..-+|+|+|..|.. .+ +-...|..+.- +..++++.|.+|
T Consensus 16 ~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~--~Ga~V~V~e~DPi~----al-qA~~dGf~v~~-----~~~a~~~adi~v 83 (162)
T PF00670_consen 16 ATNLMLAGKRVVVIGYGKVGKGIARALRG--LGARVTVTEIDPIR----AL-QAAMDGFEVMT-----LEEALRDADIFV 83 (162)
T ss_dssp HH-S--TTSEEEEE--SHHHHHHHHHHHH--TT-EEEEE-SSHHH----HH-HHHHTT-EEE------HHHHTTT-SEEE
T ss_pred cCceeeCCCEEEEeCCCcccHHHHHHHhh--CCCEEEEEECChHH----HH-HhhhcCcEecC-----HHHHHhhCCEEE
Confidence 34566689999999999876666666654 44699999999943 22 33347887653 344567888776
Q ss_pred E
Q 006256 528 L 528 (653)
Q Consensus 528 l 528 (653)
.
T Consensus 84 t 84 (162)
T PF00670_consen 84 T 84 (162)
T ss_dssp E
T ss_pred E
Confidence 4
No 317
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=28.15 E-value=7.4e+02 Score=28.00 Aligned_cols=102 Identities=21% Similarity=0.244 Sum_probs=68.7
Q ss_pred CCCEEEEeCChH-HHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc--------chHHHHhh---
Q 006256 454 DGDVLLTYGSSS-AVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIH--- 521 (653)
Q Consensus 454 dGdvILT~g~Ss-~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D--------sAv~~iM~--- 521 (653)
+++++|..|.++ .+|..+....+.| -+|+|+..-.+ |.+++.-+...|.+|..+.- ..+...+.
T Consensus 55 ~~~~~ll~gsGt~amEAav~sl~~pg--dkVLv~~nG~F--G~R~~~ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~~~~ 130 (383)
T COG0075 55 NGDVVLLSGSGTLAMEAAVASLVEPG--DKVLVVVNGKF--GERFAEIAERYGAEVVVLEVEWGEAVDPEEVEEALDKDP 130 (383)
T ss_pred CCcEEEEcCCcHHHHHHHHHhccCCC--CeEEEEeCChH--HHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcCC
Confidence 458888888776 6777777776533 46777666544 78888888888998887743 34555555
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeec
Q 006256 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (653)
Q Consensus 522 ~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~a 563 (653)
+++.|.+ .|+=.+- +++|.+.. ||-+||.|+.=++|=|
T Consensus 131 ~~~~V~~-vH~ETST-Gvlnpl~~--I~~~~k~~g~l~iVDa 168 (383)
T COG0075 131 DIKAVAV-VHNETST-GVLNPLKE--IAKAAKEHGALLIVDA 168 (383)
T ss_pred CccEEEE-EeccCcc-cccCcHHH--HHHHHHHcCCEEEEEe
Confidence 3444433 3444444 47887654 8889999988887733
No 318
>PRK08636 aspartate aminotransferase; Provisional
Probab=27.83 E-value=4.7e+02 Score=28.61 Aligned_cols=99 Identities=10% Similarity=0.027 Sum_probs=54.1
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc---cc-----------hHHHHhh
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH---IN-----------AISYIIH 521 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~---Ds-----------Av~~iM~ 521 (653)
.+++|.|...++..++....+.|. .|+| + .|.+.+...+.+ ..|+++..+. +. .+...++
T Consensus 97 ~I~it~G~~~al~~~~~~l~~~gd--~Vlv-~-~P~y~~~~~~~~--~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~ 170 (403)
T PRK08636 97 EVVATMGSKEGYVHLVQAITNPGD--VAIV-P-DPAYPIHSQAFI--LAGGNVHKMPLEYNEDFELDEDQFFENLEKALR 170 (403)
T ss_pred eEEECCChHHHHHHHHHHhCCCCC--EEEE-c-CCCCcchHHHHH--hcCCEEEEEeccccccCccChhhhhhHHHHHHh
Confidence 589999999888666655443332 4444 4 388877665533 3677776653 12 1122222
Q ss_pred ----hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 522 ----EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 522 ----~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
++..+++- .-=-.-|.+++.-==..++-+|++|++.+++
T Consensus 171 ~~~~~~~~i~~~-~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~ 213 (403)
T PRK08636 171 ESSPKPKYVVVN-FPHNPTTATVEKSFYERLVALAKKERFYIIS 213 (403)
T ss_pred hccCCceEEEEe-CCCCCCCccCCHHHHHHHHHHHHHcCcEEEE
Confidence 23333331 0012224444444445677788999987764
No 319
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=27.77 E-value=1e+03 Score=27.66 Aligned_cols=92 Identities=18% Similarity=0.184 Sum_probs=55.5
Q ss_pred CCCEEEEeCChHHHHHHHHHHH-HcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc-hHHHHhhh--ccEEEEc
Q 006256 454 DGDVLLTYGSSSAVEMILQHAH-ELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-AISYIIHE--VTRVFLG 529 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~-e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds-Av~~iM~~--Vd~VllG 529 (653)
.|..++.++..+.+..+.+-+. +.|-.. +.+-+.-......+...|...+..+.+..|. .+...+.+ .|+||
T Consensus 292 ~Gkrv~I~gd~~~a~~l~~~L~~ElGm~v--v~~gt~~~~~~~~~~~~~~~~~~~~~i~~D~~el~~~i~~~~Pdlii-- 367 (519)
T PRK02910 292 TGKRVFVFGDATHAVAAARILSDELGFEV--VGAGTYLREDARWVRAAAKEYGDEALITDDYLEVEDAIAEAAPELVL-- 367 (519)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHhcCCeE--EEEecCCcchhHHHHHHHHhcCCCeEEecCHHHHHHHHHhcCCCEEE--
Confidence 5788999998765556555555 456554 3443322233445556677777666665663 34444443 44442
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCCeeeec
Q 006256 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (653)
Q Consensus 530 AdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~a 563 (653)
|+..-..+|+..+||+++++
T Consensus 368 --------------G~~~er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 368 --------------GTQMERHSAKRLGIPCAVIS 387 (519)
T ss_pred --------------EcchHHHHHHHcCCCEEEec
Confidence 44556678999999998775
No 320
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=27.73 E-value=4.6e+02 Score=26.55 Aligned_cols=57 Identities=11% Similarity=0.113 Sum_probs=38.2
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN 514 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds 514 (653)
.+.+|++.+.|.....+-..|...|.++.|++.+.-| ..-.+.|...|..++.+...
T Consensus 49 ~~~~vv~~ssGN~g~alA~~a~~~g~~~~v~~p~~~~----~~~~~~~~~~Ga~v~~~~~~ 105 (244)
T cd00640 49 PKGVIIESTGGNTGIALAAAAARLGLKCTIVMPEGAS----PEKVAQMRALGAEVVLVPGD 105 (244)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCC----HHHHHHHHHCCCEEEEECCC
Confidence 3578888887776656666676778888888776553 12235566678777777543
No 321
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=27.60 E-value=1.4e+02 Score=27.93 Aligned_cols=29 Identities=38% Similarity=0.487 Sum_probs=19.4
Q ss_pred ccCCCEEEEeCCh---HHHHHHHHHHHHcCCe
Q 006256 452 IRDGDVLLTYGSS---SAVEMILQHAHELGKQ 480 (653)
Q Consensus 452 I~dGdvILT~g~S---s~Ve~vL~~A~e~gk~ 480 (653)
++.||+++.++.| ..+...++.|+++|-.
T Consensus 101 ~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~ 132 (138)
T PF13580_consen 101 IRPGDVLIVISNSGNSPNVIEAAEEAKERGMK 132 (138)
T ss_dssp --TT-EEEEEESSS-SHHHHHHHHHHHHTT-E
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCE
Confidence 7899999999654 5666788899886653
No 322
>PRK07179 hypothetical protein; Provisional
Probab=27.38 E-value=5.1e+02 Score=28.35 Aligned_cols=97 Identities=19% Similarity=0.081 Sum_probs=48.5
Q ss_pred CCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc--c-chHHHHhhh--ccEEEEc
Q 006256 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH--I-NAISYIIHE--VTRVFLG 529 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~--D-sAv~~iM~~--Vd~VllG 529 (653)
..+|+|.|-+.++..+|......| -+|++.. +..- .+...+...|+++.... | ..+...+.+ ...|++
T Consensus 115 ~~~~~~~sG~~An~~~l~~l~~~g--~~v~~~~--~~h~--s~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~lV~v- 187 (407)
T PRK07179 115 ESCLLCQSGWAANVGLLQTIADPN--TPVYIDF--FAHM--SLWEGVRAAGAQAHPFRHNDVDHLRRQIERHGPGIIVV- 187 (407)
T ss_pred CcEEEECCHHHHHHHHHHHhCCCC--CEEEEEC--CcCH--HHHHHHHHCCCeEEEecCCCHHHHHHHHHhcCCeEEEE-
Confidence 356776666667766666554333 3555532 2211 11222334577665552 2 344445543 223333
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 530 AdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
+.+....+.+..+ ..++-+|+.|++.++|
T Consensus 188 -~~v~n~tG~i~pl--~~I~~l~~~~~~~liv 216 (407)
T PRK07179 188 -DSVYSTTGTIAPL--ADIVDIAEEFGCVLVV 216 (407)
T ss_pred -CCCCCCCCccccH--HHHHHHHHHcCCEEEE
Confidence 4444333333332 4677788999986544
No 323
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=27.31 E-value=3.9e+02 Score=28.90 Aligned_cols=51 Identities=14% Similarity=0.008 Sum_probs=30.9
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~ 512 (653)
.+++|.|.+.++..+++...+.|. +|+| + .|.+.+.... +...|+.+..+.
T Consensus 94 ~I~it~Gs~~al~~~~~~l~~~gd--~Vlv-~-~P~y~~~~~~--~~~~g~~~~~v~ 144 (388)
T PRK07366 94 EVLPLIGSQEGTAHLPLAVLNPGD--FALL-L-DPGYPSHAGG--VYLAGGQIYPMP 144 (388)
T ss_pred eEEECCCcHHHHHHHHHHhCCCCC--EEEE-c-CCCCcchHHH--HHhcCCEEEEEE
Confidence 577888988888665554444343 4444 3 3777665433 334687777664
No 324
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=27.25 E-value=2.5e+02 Score=28.89 Aligned_cols=96 Identities=16% Similarity=0.063 Sum_probs=57.6
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcceeE
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSV 533 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAdaI 533 (653)
.|..||.+|.+.+-..=++...+.|-..+||-.|.-| ++.....+.+ ++.+-+.--...+..+++||+-.|--
T Consensus 11 ~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~-----el~~~~~~~~--i~~~~~~~~~~~~~~~~lviaAt~d~ 83 (210)
T COG1648 11 EGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEP-----ELKALIEEGK--IKWIEREFDAEDLDDAFLVIAATDDE 83 (210)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccH-----HHHHHHHhcC--cchhhcccChhhhcCceEEEEeCCCH
Confidence 5788999999986555456666778888888777722 2322222223 22222221122222367776655432
Q ss_pred ecCCCeecccchHHHHHHHhhCCCCeeeeccc
Q 006256 534 LSNGTVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (653)
Q Consensus 534 laNG~V~NKiGT~~lAl~Ak~~~VPVyV~aet 565 (653)
- ---.++-+|+.+++||+|+-..
T Consensus 84 ~---------ln~~i~~~a~~~~i~vNv~D~p 106 (210)
T COG1648 84 E---------LNERIAKAARERRILVNVVDDP 106 (210)
T ss_pred H---------HHHHHHHHHHHhCCceeccCCc
Confidence 2 2246889999999999997543
No 325
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=27.20 E-value=2.3e+02 Score=30.53 Aligned_cols=51 Identities=14% Similarity=0.200 Sum_probs=32.7
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCC-eeE-EEEeCCCCCchHHHHHHHHHhCCCCEEEEc
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGK-QFR-VVIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk-~f~-ViV~ESRP~~EG~~La~eL~~~GI~vT~I~ 512 (653)
-.||.-|+++.++.+|. +++.|. +.+ +.|+-.+|.. .....+.|||+.++.
T Consensus 96 iavl~Sg~g~nl~al~~-~~~~~~l~~~i~~visn~~~~-----~~~A~~~gIp~~~~~ 148 (289)
T PRK13010 96 VVIMVSKFDHCLNDLLY-RWRMGELDMDIVGIISNHPDL-----QPLAVQHDIPFHHLP 148 (289)
T ss_pred EEEEEeCCCccHHHHHH-HHHCCCCCcEEEEEEECChhH-----HHHHHHcCCCEEEeC
Confidence 35788889999977555 455554 344 3455566633 244566799999874
No 326
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=27.07 E-value=5.3e+02 Score=28.45 Aligned_cols=109 Identities=12% Similarity=0.098 Sum_probs=63.3
Q ss_pred HHHHHHHhccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCC---------CC---------chHHHHHHHHHhC-
Q 006256 444 IVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSR---------PK---------HEGKLLLRRLVRK- 504 (653)
Q Consensus 444 Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESR---------P~---------~EG~~La~eL~~~- 504 (653)
++..+.+.+. +..||.+|.+.+=..++..+...|.. +++++|.. -. .--..+++.|.+.
T Consensus 125 ~g~~~q~~l~-~~~VlvvG~GG~Gs~ia~~La~~Gvg-~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n 202 (376)
T PRK08762 125 VGEEGQRRLL-EARVLLIGAGGLGSPAALYLAAAGVG-TLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALN 202 (376)
T ss_pred cCHHHHHHHh-cCcEEEECCCHHHHHHHHHHHHcCCC-eEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHC
Confidence 4444555664 46788888876544455555666764 33333322 10 0112234556543
Q ss_pred -CCCEEEEc----cchHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeec
Q 006256 505 -GLSCTYTH----INAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (653)
Q Consensus 505 -GI~vT~I~----DsAv~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~a 563 (653)
.+.++.+. ...+..++.++|.||-..|.+.. -+.+.-+|+.++|||+.+.
T Consensus 203 p~v~v~~~~~~~~~~~~~~~~~~~D~Vv~~~d~~~~---------r~~ln~~~~~~~ip~i~~~ 257 (376)
T PRK08762 203 PDVQVEAVQERVTSDNVEALLQDVDVVVDGADNFPT---------RYLLNDACVKLGKPLVYGA 257 (376)
T ss_pred CCCEEEEEeccCChHHHHHHHhCCCEEEECCCCHHH---------HHHHHHHHHHcCCCEEEEE
Confidence 35554433 23445567889999888876531 2456778999999998764
No 327
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=27.04 E-value=9.2e+02 Score=26.96 Aligned_cols=96 Identities=11% Similarity=0.112 Sum_probs=53.9
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHH---hhhccEEEEcc
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYI---IHEVTRVFLGA 530 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~i---M~~Vd~VllGA 530 (653)
.|..|+.++....+..+.+.+.+.|-....+++.+.-.....++...+...++....+.+.-..-+ |.+. ..
T Consensus 298 ~gk~v~i~~~~~~~~~l~~~L~e~G~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~el~~~i~~~-----~p 372 (428)
T cd01965 298 GGKRVAIAGDPDLLLGLSRFLLEMGAEPVAAVTGTDNPPFEKRMELLASLEGIPAEVVFVGDLWDLESLAKEE-----PV 372 (428)
T ss_pred cCCEEEEEcChHHHHHHHHHHHHcCCcceEEEEcCCCchhHHHHHHhhhhcCCCceEEECCCHHHHHHHhhcc-----CC
Confidence 578888888877665666666667776655555443323334443233345666555554433333 3331 23
Q ss_pred eeEecCCCeecccchHHHHHHHhhCCCCeeeec
Q 006256 531 SSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (653)
Q Consensus 531 daIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~a 563 (653)
|-|+.|. .-.-+|+..++|++.++
T Consensus 373 dliig~~---------~~~~~a~~~~ip~i~~~ 396 (428)
T cd01965 373 DLLIGNS---------HGRYLARDLGIPLVRVG 396 (428)
T ss_pred CEEEECc---------hhHHHHHhcCCCEEEec
Confidence 3333332 23467888999998654
No 328
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=26.91 E-value=1.6e+02 Score=29.96 Aligned_cols=27 Identities=11% Similarity=0.092 Sum_probs=20.5
Q ss_pred ecccchHHHHHHHhhCCCCeeeecccc
Q 006256 540 CSRVGTACVAMVAYGFHIPVLVCCEAY 566 (653)
Q Consensus 540 ~NKiGT~~lAl~Ak~~~VPVyV~aety 566 (653)
.|-.||..++-+|+.+++.|+.++..+
T Consensus 76 ~n~~~~~~l~~~~~~~~~~~v~~Ss~~ 102 (287)
T TIGR01214 76 VNALAPQNLARAAARHGARLVHISTDY 102 (287)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEeeee
Confidence 456789999988988888877766543
No 329
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=26.87 E-value=4.3e+02 Score=28.51 Aligned_cols=109 Identities=17% Similarity=0.100 Sum_probs=64.0
Q ss_pred HHHHHHHhccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCc--------------hHH----HHHHHHHhC-
Q 006256 444 IVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKH--------------EGK----LLLRRLVRK- 504 (653)
Q Consensus 444 Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~--------------EG~----~La~eL~~~- 504 (653)
++..+.+++. ...||..|.+.+=..+++.....|-+ ++.++|..+.. -|+ .++.+|.+.
T Consensus 9 ~G~eaq~kL~-~s~VLIvG~gGLG~EiaKnLalaGVg-~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLN 86 (286)
T cd01491 9 LGHEAMKKLQ-KSNVLISGLGGLGVEIAKNLILAGVK-SVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELN 86 (286)
T ss_pred cCHHHHHHHh-cCcEEEEcCCHHHHHHHHHHHHcCCC-eEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHC
Confidence 4455566665 46788888776544556666666765 55555554421 122 122455554
Q ss_pred -CCCEEEEccchHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeec
Q 006256 505 -GLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (653)
Q Consensus 505 -GI~vT~I~DsAv~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~a 563 (653)
.++++.+...-....+.+.|.||...+.+.. -..+.-+|+.++|||+.+.
T Consensus 87 p~V~V~~~~~~~~~~~l~~fdvVV~~~~~~~~---------~~~in~~c~~~~ipfI~a~ 137 (286)
T cd01491 87 PYVPVTVSTGPLTTDELLKFQVVVLTDASLED---------QLKINEFCHSPGIKFISAD 137 (286)
T ss_pred CCCEEEEEeccCCHHHHhcCCEEEEecCCHHH---------HHHHHHHHHHcCCEEEEEe
Confidence 4666666544333456789988776553211 1234457899999998754
No 330
>PLN00203 glutamyl-tRNA reductase
Probab=26.72 E-value=3.5e+02 Score=31.63 Aligned_cols=71 Identities=17% Similarity=0.285 Sum_probs=45.0
Q ss_pred CCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEc
Q 006256 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLG 529 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllG 529 (653)
+..|+.+|.+..-..++..+...|. -+|+|++ |-......|+.++. |+.+.++........+.++|.||..
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~-~~V~V~n-Rs~era~~La~~~~--g~~i~~~~~~dl~~al~~aDVVIsA 336 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGC-TKMVVVN-RSEERVAALREEFP--DVEIIYKPLDEMLACAAEADVVFTS 336 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCC-CeEEEEe-CCHHHHHHHHHHhC--CCceEeecHhhHHHHHhcCCEEEEc
Confidence 6789999999877677777766552 2455553 33333344444442 5556665555556677889998874
No 331
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=26.72 E-value=3.2e+02 Score=26.03 Aligned_cols=45 Identities=16% Similarity=0.211 Sum_probs=26.9
Q ss_pred EEEEeCChHHHHHHHHHHHHcC-CeeEEEEeCCCCCchHHHHHHHH
Q 006256 457 VLLTYGSSSAVEMILQHAHELG-KQFRVVIVDSRPKHEGKLLLRRL 501 (653)
Q Consensus 457 vILT~g~Ss~Ve~vL~~A~e~g-k~f~ViV~ESRP~~EG~~La~eL 501 (653)
+|.||.....+..+|....++. ..+.|||+|....-+-...++++
T Consensus 2 iI~~~n~~~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~~~ 47 (202)
T cd04185 2 VVVTYNRLDLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLTSL 47 (202)
T ss_pred EEEeeCCHHHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHHHh
Confidence 4667776777777777665543 34677777665554444444444
No 332
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=26.68 E-value=4.2e+02 Score=29.41 Aligned_cols=92 Identities=16% Similarity=0.214 Sum_probs=50.8
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhh-ccEEEEccee
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHE-VTRVFLGASS 532 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~-Vd~VllGAda 532 (653)
.|.+|+..|.+..=..+.+.+++.| .+|++.|..+... ...+.+|.+.|+.+..-.+.. .+..+ +|.||..+-
T Consensus 4 ~~k~v~v~G~g~~G~s~a~~l~~~G--~~V~~~d~~~~~~-~~~~~~l~~~g~~~~~~~~~~--~~~~~~~d~vV~s~g- 77 (447)
T PRK02472 4 QNKKVLVLGLAKSGYAAAKLLHKLG--ANVTVNDGKPFSE-NPEAQELLEEGIKVICGSHPL--ELLDEDFDLMVKNPG- 77 (447)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCC--CEEEEEcCCCccc-hhHHHHHHhcCCEEEeCCCCH--HHhcCcCCEEEECCC-
Confidence 3667888887763223334444445 5788888665322 234567888898765433322 22333 677766552
Q ss_pred EecCCCeecccchHHHHHHHhhCCCCee
Q 006256 533 VLSNGTVCSRVGTACVAMVAYGFHIPVL 560 (653)
Q Consensus 533 IlaNG~V~NKiGT~~lAl~Ak~~~VPVy 560 (653)
|-.+ ..+...|++.++||+
T Consensus 78 i~~~---------~~~~~~a~~~~i~v~ 96 (447)
T PRK02472 78 IPYT---------NPMVEKALEKGIPII 96 (447)
T ss_pred CCCC---------CHHHHHHHHCCCcEE
Confidence 2222 234555666666665
No 333
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=26.54 E-value=6.8e+02 Score=27.91 Aligned_cols=98 Identities=11% Similarity=0.110 Sum_probs=49.0
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHH-HHHHhCCCCEEEEccc---hHHHHhh-hccEEEEc
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLG 529 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La-~eL~~~GI~vT~I~Ds---Av~~iM~-~Vd~VllG 529 (653)
+.|+|-+-+.++..++....+.|. +|++ ..|.+.+. .+. ..+...|+.+..+... .+-..+. +..+|++-
T Consensus 77 ~~v~~~sG~~Ai~~~l~all~pGD--~Vvv--~~p~Y~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~l~ 152 (405)
T PRK08776 77 GGVITATGMGAINLVLNALLQPGD--TLVV--PHDAYGGSWRLFNALAKKGHFALITADLTDPRSLADALAQSPKLVLIE 152 (405)
T ss_pred ceEEEcCHHHHHHHHHHHHhCCCC--EEEE--ccCCchHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEE
Confidence 446665555666555544444343 4544 34666553 233 3345678888887532 2323332 33344332
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 530 AdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
.---..|.+.. -..|+-+|+.|+++++|
T Consensus 153 -~P~NPtG~v~d---l~~I~~la~~~gi~vIv 180 (405)
T PRK08776 153 -TPSNPLLRITD---LRFVIEAAHKVGALTVV 180 (405)
T ss_pred -CCCCCCCccCC---HHHHHHHHHHcCCEEEE
Confidence 11122333321 23566678999987665
No 334
>TIGR01110 mdcA malonate decarboxylase, alpha subunit. This model describes malonate decarboxylase alpha subunit, from both the water-soluble form as found in Klebsiella pneumoniae and the form couple to sodium ion pumping in Malonomonas rubra. Malonate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases. Essentially, it couples the energy derived from decarboxylation of a carboxylic acid substrate to move Na+ ion across the bilayer. Functional malonate decarboylase is a multi subunit protein. The alpha subunit enzymatically performs the transfer of malonate (substrate) to an acyl carrier protein subunit for subsequent decarboxylation, hence the name: acetyl-S-acyl carrier protein:malonate carrier protein-SH transferase.
Probab=26.54 E-value=6.5e+02 Score=29.73 Aligned_cols=134 Identities=13% Similarity=0.128 Sum_probs=79.4
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHhccCCCEEEEeCChHHHHHHHHH----HHHcC-CeeEEEEe-CCCCC-------
Q 006256 426 HSDIERFI-NEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQH----AHELG-KQFRVVIV-DSRPK------- 491 (653)
Q Consensus 426 ~e~I~~fi-~E~i~~a~~~Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~----A~e~g-k~f~ViV~-ESRP~------- 491 (653)
.+.+..|. ..+.. ..+.|+......|++||+|..=|+-.-.-.+|-+ .-.++ +.++++.. -++|.
T Consensus 12 ~~~~~~~~~~~~~~-~~~~~~~~l~~~i~~Gdrv~leg~~q~~a~~l~~~l~~~~~~~~~dLh~v~~~~~~~~~~~l~~~ 90 (543)
T TIGR01110 12 LNAANELFSDGKVV-PTQNGVELLEAVIAPGDRVVLEGNNQKQADFLSRCLASCDPEKINDLHMVQSSVPLPEHLDLFEK 90 (543)
T ss_pred HHHHHhhhcCCcEe-eHHHHHHHHHHhCCCCCEEEECCccccchHHHHhhHHhhCccccCCcEEEEecCCchhHHHHHhc
Confidence 34444444 33222 3445788888899999999988875444344433 22233 34666654 34442
Q ss_pred ------------chHHHHHHHHHhCCCCEEEEccc----hHHHHhh--hccEEEEcceeEecCCCeecccch-----HHH
Q 006256 492 ------------HEGKLLLRRLVRKGLSCTYTHIN----AISYIIH--EVTRVFLGASSVLSNGTVCSRVGT-----ACV 548 (653)
Q Consensus 492 ------------~EG~~La~eL~~~GI~vT~I~Ds----Av~~iM~--~Vd~VllGAdaIlaNG~V~NKiGT-----~~l 548 (653)
.++.+|+ .+.+.| .+.|++.. .++.++. .+|.+|+=+...-.+|.+. .|+ ..+
T Consensus 91 G~a~kl~fs~~g~~~~R~~-~av~~G-~id~iPih~~lse~pRlf~~L~pDVALI~aSpAD~~GN~s--lG~s~~~~~aa 166 (543)
T TIGR01110 91 GIARKLDFSFAGPQSLRIA-QLLEDG-KLEIGAIHTYLELYSRYFVDLTPNVSLIAAYEADRDGNLY--TGPNTEDTPAI 166 (543)
T ss_pred CceeeEEEeecCcchHHHH-HHHHcC-CeeEeehhchHhhhhhhhhccCCcEEEEECCcCCCCCeEE--ecCcccchHHH
Confidence 2344544 555666 35555433 3444432 5899999999999999994 455 456
Q ss_pred HHHHhhCCCCeeeecc
Q 006256 549 AMVAYGFHIPVLVCCE 564 (653)
Q Consensus 549 Al~Ak~~~VPVyV~ae 564 (653)
+..|+..+--|+|-++
T Consensus 167 aeAAk~~agiVIVEVN 182 (543)
T TIGR01110 167 VEATAFRDGIVIAQVN 182 (543)
T ss_pred HHhhhhcCCEEEEEEC
Confidence 6677755555555444
No 335
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=26.50 E-value=2.2e+02 Score=30.47 Aligned_cols=67 Identities=13% Similarity=0.203 Sum_probs=41.9
Q ss_pred EEEEeCChHHHHHHHHHHHHcCC-eeE-EEEeCCCCCchHHHHHHHHHhCCCCEEEEcc---------chHHHHhh--hc
Q 006256 457 VLLTYGSSSAVEMILQHAHELGK-QFR-VVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---------NAISYIIH--EV 523 (653)
Q Consensus 457 vILT~g~Ss~Ve~vL~~A~e~gk-~f~-ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D---------sAv~~iM~--~V 523 (653)
.||.-|+++.++.+|. +++.|. +.. +.|+-.+|..++. ..+.|||+.++.. ..+...|. ++
T Consensus 88 ~vl~Sg~g~nl~~l~~-~~~~g~l~~~i~~visn~~~~~~~-----A~~~gIp~~~~~~~~~~~~~~e~~~~~~l~~~~~ 161 (280)
T TIGR00655 88 AILVSKEDHCLGDLLW-RWYSGELDAEIALVISNHEDLRSL-----VERFGIPFHYIPATKDNRVEHEKRQLELLKQYQV 161 (280)
T ss_pred EEEEcCCChhHHHHHH-HHHcCCCCcEEEEEEEcChhHHHH-----HHHhCCCEEEcCCCCcchhhhHHHHHHHHHHhCC
Confidence 5777788999977665 455564 334 4455667766552 5678999998764 12333343 47
Q ss_pred cEEEEc
Q 006256 524 TRVFLG 529 (653)
Q Consensus 524 d~VllG 529 (653)
|.+++.
T Consensus 162 Dlivla 167 (280)
T TIGR00655 162 DLVVLA 167 (280)
T ss_pred CEEEEe
Confidence 777663
No 336
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=26.37 E-value=3.7e+02 Score=26.51 Aligned_cols=104 Identities=13% Similarity=0.073 Sum_probs=51.8
Q ss_pred CEEEEeCChHHHHHHHH-HHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEE-cc----chHHHHhh-------h
Q 006256 456 DVLLTYGSSSAVEMILQ-HAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT-HI----NAISYIIH-------E 522 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~-~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I-~D----sAv~~iM~-------~ 522 (653)
.+||..|.+..|...|. ...++| .+|+++..++ .....+..+|...+.++.++ .| .++..++. .
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g--~~v~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAG--ANVVVNDLGE-AGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGG 78 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCC--CEEEEEeCCH-HHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 35777776655543333 333444 3677776553 23344445565555454433 12 22322222 4
Q ss_pred ccEEEEcceeEecCCCe-------------ecccchHHHHHHH----hhCCCCeeeec
Q 006256 523 VTRVFLGASSVLSNGTV-------------CSRVGTACVAMVA----YGFHIPVLVCC 563 (653)
Q Consensus 523 Vd~VllGAdaIlaNG~V-------------~NKiGT~~lAl~A----k~~~VPVyV~a 563 (653)
+|.||..|-.. ..+.. .|-.|+..+.-.+ +.+++..+|..
T Consensus 79 ~d~vi~~a~~~-~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~~v~~ 135 (255)
T TIGR01963 79 LDILVNNAGIQ-HVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQGWGRIINI 135 (255)
T ss_pred CCEEEECCCCC-CCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 67777766322 11111 3666776666555 44565555444
No 337
>PTZ00411 transaldolase-like protein; Provisional
Probab=26.30 E-value=8.3e+02 Score=27.05 Aligned_cols=54 Identities=15% Similarity=0.334 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHc----------CCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHh
Q 006256 464 SSAVEMILQHAHEL----------GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYII 520 (653)
Q Consensus 464 Ss~Ve~vL~~A~e~----------gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM 520 (653)
|...+.++.+|++- +.++-|=|.-| .+|.+.++.|.+.||+|.++..=++...+
T Consensus 112 s~d~e~~i~~A~~l~~l~~~~gi~~~rilIKIPaT---~eGi~Aa~~L~~eGI~~N~TlvFS~~QA~ 175 (333)
T PTZ00411 112 SFDKQAMVDKARKIIKMYEEAGISKDRILIKLAST---WEGIQAAKALEKEGIHCNLTLLFSFAQAV 175 (333)
T ss_pred ccCHHHHHHHHHHHHHhhhhhcCCCCcEEEEeCCC---HHHHHHHHHHHHCCCceeEeEecCHHHHH
Confidence 44455666666642 12333334333 58999999999999999887655444443
No 338
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=26.24 E-value=6.3e+02 Score=27.64 Aligned_cols=103 Identities=12% Similarity=0.081 Sum_probs=48.6
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH--HHHHhCCCCE----EEEc-cc-------hHHHH
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL--RRLVRKGLSC----TYTH-IN-------AISYI 519 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La--~eL~~~GI~v----T~I~-Ds-------Av~~i 519 (653)
..++++|-+.+..+..++....+.+..-.+++++. ..+-....+ ..+...|+.+ .++. +. .+-.+
T Consensus 86 ~~~v~~~~~~t~~l~~~~~~~~~~~~~~~~i~~~~-~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~l~~~ 164 (406)
T TIGR01814 86 EDEVVVMNTLTINLHLLLASFYKPTPKRYKILLEA-KAFPSDHYAIESQLQLHGLTVEESMVQIEPREEETLRLEDILDT 164 (406)
T ss_pred CCcEEEeCCchHHHHHHHHHhcCCcCCccEEEecC-CCCChHHHHHHHHHHhcCCCcccceEEeccCCCCccCHHHHHHH
Confidence 34678888777777555554433332222333332 222222222 2345568776 3442 21 23333
Q ss_pred hh----hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 520 IH----EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 520 M~----~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
+. +..+|+ ...+...-++++. -..|+-+||.||+.|+|
T Consensus 165 ~~~~~~~t~lv~--~~~v~~~tG~~~~--~~~i~~~~~~~g~~~~v 206 (406)
T TIGR01814 165 IEKNGDDIAVIL--LSGVQYYTGQLFD--MAAITRAAHAKGALVGF 206 (406)
T ss_pred HHhcCCCeEEEE--EeccccccceecC--HHHHHHHHHHcCCEEEE
Confidence 32 122222 2223322223333 33477788999988776
No 339
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=26.24 E-value=3.7e+02 Score=26.85 Aligned_cols=108 Identities=15% Similarity=0.103 Sum_probs=56.8
Q ss_pred CCCEEEEeCChHHHHHHH-HHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEE-cc----chHHHHhhh-----
Q 006256 454 DGDVLLTYGSSSAVEMIL-QHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT-HI----NAISYIIHE----- 522 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL-~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I-~D----sAv~~iM~~----- 522 (653)
.|.+||..|-+.-+...| +.+.++| .+|+++..+ ..+...+...+...|..+.++ +| ..+..++.+
T Consensus 9 ~~k~vlItGa~g~iG~~ia~~l~~~G--~~V~~~~r~-~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (255)
T PRK07523 9 TGRRALVTGSSQGIGYALAEGLAQAG--AEVILNGRD-PAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEI 85 (255)
T ss_pred CCCEEEEECCcchHHHHHHHHHHHcC--CEEEEEeCC-HHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 466888888766554333 4445555 477776543 334455556676667666554 22 234444443
Q ss_pred --ccEEEEcceeEecCCCe-------------ecccchHHHHHHHhhC----CCCeeeeccc
Q 006256 523 --VTRVFLGASSVLSNGTV-------------CSRVGTACVAMVAYGF----HIPVLVCCEA 565 (653)
Q Consensus 523 --Vd~VllGAdaIlaNG~V-------------~NKiGT~~lAl~Ak~~----~VPVyV~aet 565 (653)
+|.||..|-.. ..+.. .|-.|++.+.-++..+ +...+|...+
T Consensus 86 ~~~d~li~~ag~~-~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss 146 (255)
T PRK07523 86 GPIDILVNNAGMQ-FRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIAS 146 (255)
T ss_pred CCCCEEEECCCCC-CCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEcc
Confidence 56666554221 11111 4556776666655432 4455555443
No 340
>PRK08363 alanine aminotransferase; Validated
Probab=26.10 E-value=3.4e+02 Score=29.51 Aligned_cols=53 Identities=19% Similarity=0.097 Sum_probs=28.5
Q ss_pred cCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEE
Q 006256 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT 511 (653)
Q Consensus 453 ~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I 511 (653)
...++++|.|.+.++..++....+.| -+|++. .|.+.+...+ +...|..+..+
T Consensus 92 ~~~~i~it~G~~~al~~~~~~~~~~g--d~Vl~~--~p~y~~~~~~--~~~~g~~~v~~ 144 (398)
T PRK08363 92 TPDDVRVTAAVTEALQLIFGALLDPG--DEILIP--GPSYPPYTGL--VKFYGGVPVEY 144 (398)
T ss_pred ChhhEEEeCCHHHHHHHHHHHhCCCC--CEEEEc--CCCCcchHHH--HHHcCCEEEEe
Confidence 34467888888777766555443333 345554 3666554432 22345544443
No 341
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=25.86 E-value=2.3e+02 Score=31.98 Aligned_cols=107 Identities=14% Similarity=0.101 Sum_probs=56.9
Q ss_pred CCEEEEeCChHHHHHH-HHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcceeE
Q 006256 455 GDVLLTYGSSSAVEMI-LQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSV 533 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~v-L~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAdaI 533 (653)
..+||..|-+-.|..- +..+.++| .+|++++.........+. .+.. ...++++........+.++|.||--|-..
T Consensus 120 ~mkILVTGatGFIGs~Lv~~Ll~~G--~~V~~ldr~~~~~~~~~~-~~~~-~~~~~~~~~Di~~~~~~~~D~ViHlAa~~ 195 (436)
T PLN02166 120 RLRIVVTGGAGFVGSHLVDKLIGRG--DEVIVIDNFFTGRKENLV-HLFG-NPRFELIRHDVVEPILLEVDQIYHLACPA 195 (436)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCC--CEEEEEeCCCCccHhHhh-hhcc-CCceEEEECccccccccCCCEEEECceec
Confidence 3678888876544333 33444444 577777643211111111 1211 12345554322333345788777765322
Q ss_pred ecCCC--------eecccchHHHHHHHhhCCCCeeeeccc
Q 006256 534 LSNGT--------VCSRVGTACVAMVAYGFHIPVLVCCEA 565 (653)
Q Consensus 534 laNG~--------V~NKiGT~~lAl~Ak~~~VPVyV~aet 565 (653)
..... -.|-.||..+.-+|+.+++.|+.+.-+
T Consensus 196 ~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~r~V~~SS~ 235 (436)
T PLN02166 196 SPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLTSTS 235 (436)
T ss_pred cchhhccCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECcH
Confidence 11011 167889999999999999876665443
No 342
>PRK12354 carbamate kinase; Reviewed
Probab=25.86 E-value=1.7e+02 Score=31.90 Aligned_cols=56 Identities=11% Similarity=0.202 Sum_probs=32.9
Q ss_pred HHHHHHHhccCCCEEEEeCChHHHHHHHHHHHHcC----CeeEEEEeCCCCCchHHHHHHH
Q 006256 444 IVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELG----KQFRVVIVDSRPKHEGKLLLRR 500 (653)
Q Consensus 444 Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~g----k~f~ViV~ESRP~~EG~~La~e 500 (653)
++++.++++....+|+|||++.-|..++..+.+.. ..+.+.+.+|- ..-|..+...
T Consensus 31 ~a~~ia~~~~~~~vvi~HGnGpqvG~~~~~~~~~~~~~~~pl~~~~a~sq-g~iGy~l~q~ 90 (307)
T PRK12354 31 AAEQIAKIAREHELVIVHGNGPQVGLLALQNAAYKDVTPYPLDVLGAETE-GMIGYMLEQE 90 (307)
T ss_pred HHHHHHHHhCCCeEEEEeCCccHHhHHHHHHHHhcCCCCCCcchhccccc-chHHHHHHHH
Confidence 44455556665589999999999965555444322 23555554443 2345555544
No 343
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=25.82 E-value=2.1e+02 Score=27.65 Aligned_cols=21 Identities=10% Similarity=0.196 Sum_probs=8.6
Q ss_pred HHHHHHHHcCCeeEEEEeCCC
Q 006256 469 MILQHAHELGKQFRVVIVDSR 489 (653)
Q Consensus 469 ~vL~~A~e~gk~f~ViV~ESR 489 (653)
.++....+.....+++..+..
T Consensus 43 ~~~~~~~~~~~~i~~~~~~~n 63 (224)
T cd06442 43 EIVRELAKEYPRVRLIVRPGK 63 (224)
T ss_pred HHHHHHHHhCCceEEEecCCC
Confidence 334443333344444444433
No 344
>PF04951 Peptidase_M55: D-aminopeptidase; InterPro: IPR007035 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M55 (DppA aminopeptidase family, clan MN). The type example is Bacillus subtilis DppA, which is a binuclear zinc-dependent, D-specific aminopeptidase. The structure reveals that DppA is a new example of a self-compartmentalising protease, a family of proteolytic complexes. Proteasomes are the most extensively studied representatives of this family. The DppA enzyme is composed of identical 30 kDa subunits organised in a decamer with 52 point-group symmetry. A 20 A wide channel runs through the complex, giving access to a central chamber holding the active sites. The structure shows DppA to be a prototype of a new family of metalloaminopeptidases characterised by the SXDXEG key sequence []. The only known substrates are D-ala-D-ala and D-ala-gly-gly.; PDB: 1HI9_A.
Probab=25.79 E-value=77 Score=33.85 Aligned_cols=39 Identities=23% Similarity=0.272 Sum_probs=26.1
Q ss_pred eEecCCCeecccchHHHHHHHhhCCCCeeeecccccccccc
Q 006256 532 SVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERV 572 (653)
Q Consensus 532 aIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~ 572 (653)
.|--||-.++-.| .-|++|-+|||||+.++..-+++...
T Consensus 125 ~v~iNG~~~gE~~--lna~~Ag~~GVPV~lVsGD~~l~~ea 163 (265)
T PF04951_consen 125 EVRINGREVGEFG--LNAALAGYYGVPVVLVSGDDALCEEA 163 (265)
T ss_dssp EEEETTEEE-HHH--HHHHHHHHTT--EEEEEEEHHHHHHH
T ss_pred eEEECCEEcchhH--HHHHHHhhcCCcEEEEeCcHHHHHHH
Confidence 4555666666544 46899999999999998877776543
No 345
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=25.77 E-value=2.9e+02 Score=29.32 Aligned_cols=94 Identities=12% Similarity=0.137 Sum_probs=52.2
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccch---HHHHhhhccEEEEcc
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA---ISYIIHEVTRVFLGA 530 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsA---v~~iM~~Vd~VllGA 530 (653)
...+|+|.|.+.++..++. +... . .|++. .|.+.+...+ +...|+++..+.... .--.++. ..+
T Consensus 57 ~~~I~it~Gs~~~l~~~~~-~~~~--~-~vv~~--~P~y~~y~~~--~~~~G~~v~~vp~~~~~~~~~~l~~-----~~~ 123 (332)
T PRK06425 57 KIKVLIGPGLTHFIYRLLS-YINV--G-NIIIV--EPNFNEYKGY--AFTHGIRISALPFNLINNNPEILNN-----YNF 123 (332)
T ss_pred cceEEECCCHHHHHHHHHH-HhCC--C-cEEEe--CCChHHHHHH--HHHcCCeEEEEeCCcccCcHHHHhh-----cCC
Confidence 3457788888878865554 4322 2 46666 4887665443 344688887775321 1112221 133
Q ss_pred eeEecCCCeecccch-------HHHHHHHhhCCCCeee
Q 006256 531 SSVLSNGTVCSRVGT-------ACVAMVAYGFHIPVLV 561 (653)
Q Consensus 531 daIlaNG~V~NKiGT-------~~lAl~Ak~~~VPVyV 561 (653)
+.|+-+ .--|..|+ ..++-.|++|++.+++
T Consensus 124 k~v~l~-nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~ 160 (332)
T PRK06425 124 DLIFIV-SPDNPLGNLISRDSLLTISEICRKKGALLFI 160 (332)
T ss_pred CEEEEe-CCCCCcCCccCHHHHHHHHHHHHHcCCEEEE
Confidence 333333 34566666 5566678888886553
No 346
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=25.72 E-value=9e+02 Score=26.42 Aligned_cols=110 Identities=12% Similarity=0.080 Sum_probs=45.9
Q ss_pred HhccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccch---HHHHhhh----
Q 006256 450 TKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA---ISYIIHE---- 522 (653)
Q Consensus 450 ~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsA---v~~iM~~---- 522 (653)
++....+.|++-+.+.+...+|..+...... .+++++.-.. ..+...+...|.++.++..+. +...+..
T Consensus 102 ~~~g~~~~i~~~sG~~a~~~~i~~l~~~~~g-~~vi~~~~~h---~s~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~ 177 (410)
T PRK13392 102 DLHGKESALLFTSGYVSNDAALSTLGKLLPG-CVILSDALNH---ASMIEGIRRSGAEKQVFRHNDLADLEEQLASVDPD 177 (410)
T ss_pred HHhCCCCEEEECcHHHHHHHHHHHHhcCCCC-CEEEEehhhh---HHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhccCC
Confidence 3343334444443344555555543321122 2444433211 222234445688877765332 2233321
Q ss_pred ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeeccccc
Q 006256 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYK 567 (653)
Q Consensus 523 Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~aetyK 567 (653)
-+++|+-..---..|.++. --.+.-+|+.|++.++ +=|.|-
T Consensus 178 ~t~~v~i~~~~n~tG~~~~---l~~i~~l~~~~~~~li-vDea~~ 218 (410)
T PRK13392 178 RPKLIAFESVYSMDGDIAP---IEAICDLADRYNALTY-VDEVHA 218 (410)
T ss_pred CCEEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEE-EECCcc
Confidence 1123222211112233333 2346667888887443 334443
No 347
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=25.65 E-value=2.4e+02 Score=31.43 Aligned_cols=104 Identities=14% Similarity=0.119 Sum_probs=68.9
Q ss_pred CCCEEEEeC--ChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH----HHHHHHHh-C-CCCEEEEccch--HHHHhhhc
Q 006256 454 DGDVLLTYG--SSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK----LLLRRLVR-K-GLSCTYTHINA--ISYIIHEV 523 (653)
Q Consensus 454 dGdvILT~g--~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~----~La~eL~~-~-GI~vT~I~DsA--v~~iM~~V 523 (653)
++--|.-+. +...+..+|+.|-+.+..+-+=+.++.=.+-|. .|++.+.+ . .|||-+-+|.+ ...+++-+
T Consensus 14 ~~yAV~AfN~~n~e~~~aii~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~~~~~ae~~~~VPValHLDHg~~~e~i~~Ai 93 (347)
T TIGR01521 14 FGYGVPAFNVNNMEQMRAIMEAADKTDSPVILQASRGARSYAGAPFLRHLILAAIEEYPHIPVVMHQDHGNSPATCQRAI 93 (347)
T ss_pred cCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHH
Confidence 344454442 345777888877766655433333332122233 34455554 3 38999999976 55555544
Q ss_pred cEEEEcceeEecCCCee-----------cccchHHHHHHHhhCCCCee
Q 006256 524 TRVFLGASSVLSNGTVC-----------SRVGTACVAMVAYGFHIPVL 560 (653)
Q Consensus 524 d~VllGAdaIlaNG~V~-----------NKiGT~~lAl~Ak~~~VPVy 560 (653)
+ .|-.+|+-||+-. |--=|-.++-.||.+||.|=
T Consensus 94 ~---~GFtSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~GvsVE 138 (347)
T TIGR01521 94 Q---LGFTSVMMDGSLREDAKTPADYDYNVRVTAEVVAFAHAVGASVE 138 (347)
T ss_pred H---cCCCEEeecCcCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 4 4999999999988 88889999999999999853
No 348
>PRK11242 DNA-binding transcriptional regulator CynR; Provisional
Probab=25.64 E-value=7.2e+02 Score=25.27 Aligned_cols=138 Identities=13% Similarity=0.121 Sum_probs=76.9
Q ss_pred HHHHHHHHHhcCCccccHHHHHHHHHHHHHhc-----CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 006256 381 ISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKI-----PISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDG 455 (653)
Q Consensus 381 L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~~~-----~~~~~~~eaK~~L~e~I~~fi~E~i~~a~~~Ia~~a~~~I~dG 455 (653)
+..+++.|--++| ++.+.|++|.+.+... ..++...+.-+.|.+.++.++++ +..+...+.... . -..|
T Consensus 18 ~s~AA~~L~isqs---avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~~~~il~~-~~~~~~~~~~~~-~-~~~~ 91 (296)
T PRK11242 18 FTRAAEALHVSQP---TLSQQIRQLEESLGVQLFDRSGRTVRLTDAGEVYLRYARRALQD-LEAGRRAIHDVA-D-LSRG 91 (296)
T ss_pred HHHHHHHcCCCch---HHHHHHHHHHHHhCCeeEeEcCCceeechhHHHHHHHHHHHHHH-HHHHHHHHHHhc-C-CCee
Confidence 6778888998999 8999999998876431 12233344555666666666654 333333222111 0 1123
Q ss_pred CEEEEeCC-----hHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcc
Q 006256 456 DVLLTYGS-----SSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (653)
Q Consensus 456 dvILT~g~-----Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGA 530 (653)
-+++|. +..+..+|...+++....++.+.+... ..+...|.+.++++-++...- .........++-
T Consensus 92 --~i~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~----~~~~~~l~~g~~Dl~i~~~~~---~~~~l~~~~l~~ 162 (296)
T PRK11242 92 --SLRLAMTPTFTAYLIGPLIDAFHARYPGITLTIREMSQ----ERIEALLADDELDVGIAFAPV---HSPEIEAQPLFT 162 (296)
T ss_pred --EEEEEeccchhhhhhHHHHHHHHHHCCCCEEEEEeCCH----HHHHHHHHCCCCcEEEEecCC---CCcceeEEEeee
Confidence 233332 234567777777766676766654432 345567777778877653221 112344455554
Q ss_pred eeE
Q 006256 531 SSV 533 (653)
Q Consensus 531 daI 533 (653)
|.+
T Consensus 163 ~~~ 165 (296)
T PRK11242 163 ETL 165 (296)
T ss_pred ccE
Confidence 444
No 349
>PRK12342 hypothetical protein; Provisional
Probab=25.51 E-value=3.6e+02 Score=28.58 Aligned_cols=89 Identities=13% Similarity=0.109 Sum_probs=56.3
Q ss_pred EEEEeCChHHHHH-HHHHHHHcCCeeEEEEeCCCCCchHH---HHHHHHHhCCCCEEEEccchHHHHhh--hccEEEEcc
Q 006256 457 VLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGK---LLLRRLVRKGLSCTYTHINAISYIIH--EVTRVFLGA 530 (653)
Q Consensus 457 vILT~g~Ss~Ve~-vL~~A~e~gk~f~ViV~ESRP~~EG~---~La~eL~~~GI~vT~I~DsAv~~iM~--~Vd~VllGA 530 (653)
+++|+|..++-.. ++++|...|-.--|.| ..+ .+.|. ..++-|.. +++ ..|+||.|-
T Consensus 55 tvls~Gp~~a~~~~l~r~alamGaD~avli-~d~-~~~g~D~~ata~~La~---------------~i~~~~~DLVl~G~ 117 (254)
T PRK12342 55 AALTVGGSLLQNSKVRKDVLSRGPHSLYLV-QDA-QLEHALPLDTAKALAA---------------AIEKIGFDLLLFGE 117 (254)
T ss_pred EEEEeCCChHhHHHHHHHHHHcCCCEEEEE-ecC-ccCCCCHHHHHHHHHH---------------HHHHhCCCEEEEcC
Confidence 5788888765444 5687888887744444 444 23332 22344433 222 489999998
Q ss_pred eeEecCCCeecccchHHHHHHHhhCCCCeeeeccccccc
Q 006256 531 SSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFH 569 (653)
Q Consensus 531 daIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~aetyKf~ 569 (653)
.++-.+.+. .=+++|...++|++-.+...++.
T Consensus 118 ~s~D~~tgq-------vg~~lA~~Lg~P~vt~v~~~~~~ 149 (254)
T PRK12342 118 GSGDLYAQQ-------VGLLLGELLQLPVINAVSKIQRQ 149 (254)
T ss_pred CcccCCCCC-------HHHHHHHHhCCCcEeeEEEEEEe
Confidence 777654332 23578999999999777666554
No 350
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=25.41 E-value=1.4e+02 Score=32.49 Aligned_cols=63 Identities=24% Similarity=0.337 Sum_probs=37.1
Q ss_pred HHHHHHHhccC-CCEEEEeCChHHHHHHHHHHHH----cC---CeeEEEEeCCCCCchHH----HHHHHHHhCCCC
Q 006256 444 IVKHAVTKIRD-GDVLLTYGSSSAVEMILQHAHE----LG---KQFRVVIVDSRPKHEGK----LLLRRLVRKGLS 507 (653)
Q Consensus 444 Ia~~a~~~I~d-GdvILT~g~Ss~Ve~vL~~A~e----~g---k~f~ViV~ESRP~~EG~----~La~eL~~~GI~ 507 (653)
-+++.+.++.+ .++|+||||+.-|..+++.-.. .+ ..+.+.+.+|-=+ =|. .|.++|...|++
T Consensus 31 ta~~i~~l~~~g~e~VitHGNGPQVG~l~lq~~aa~~~~~~p~~PLd~~~AmsQG~-IGy~l~qal~n~l~~~~~~ 105 (312)
T COG0549 31 TAEQIADLIASGYEVVITHGNGPQVGLLLLQNEAADSEKGVPAYPLDVLVAMSQGM-IGYMLQQALRNELPRRGLE 105 (312)
T ss_pred HHHHHHHHHhcCCeEEEEcCCCchHHHHHHHhhhhccccCCCCccHHHHhHhhhhH-HHHHHHHHHHHHHhhcCCC
Confidence 34455667777 5899999999999555443211 11 2345555555322 133 334677778875
No 351
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=25.39 E-value=9.9e+02 Score=26.79 Aligned_cols=98 Identities=12% Similarity=0.101 Sum_probs=56.1
Q ss_pred CCEEEEeCChHHHHHHHHHHH-HcCCeeEEEEeCCC-CCchHHHHHHHHHhCCCCEEE--Eccc-hHHHHhhhccEEEE-
Q 006256 455 GDVLLTYGSSSAVEMILQHAH-ELGKQFRVVIVDSR-PKHEGKLLLRRLVRKGLSCTY--THIN-AISYIIHEVTRVFL- 528 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~-e~gk~f~ViV~ESR-P~~EG~~La~eL~~~GI~vT~--I~Ds-Av~~iM~~Vd~Vll- 528 (653)
|.++..++-+..+..+-+-+. +.|-...++++... |......+..+|...|+...+ +.|. .+.-.+.+.+ +-
T Consensus 293 ~k~vai~~~~~~~~~l~~~L~~elGm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~D~~~~~~~i~~~~--~~~ 370 (427)
T cd01971 293 PRRFAVIADSTYALGLARFLVNELGWVPAKQVITDNPPEKYRSAIENEFEAEGVSAEVVFSEDGYAIGQSLRQSD--FKY 370 (427)
T ss_pred CceEEEECChHHHHHHHHHHHHhcCCceEEEEecCCCCHHHHHHHHHHHHhcCCCCcEEEecCHHHHHHHHHhCC--CCC
Confidence 578888888876666666564 67887776666544 444344444556566665443 3443 3333333322 00
Q ss_pred cceeEecCCCeecccchHHHHHHHhhCCCCeeeec
Q 006256 529 GASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (653)
Q Consensus 529 GAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~a 563 (653)
++|-|+. +..---+|++.++|++.++
T Consensus 371 ~~dliig---------~s~~~~~a~~~~ip~i~~~ 396 (427)
T cd01971 371 KPPIIFG---------SSWERDLAKELGGKILEVS 396 (427)
T ss_pred CCCEEEe---------chHHHHHHHHcCCCeEEEe
Confidence 1333333 3334457889999999665
No 352
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=25.38 E-value=5.2e+02 Score=26.88 Aligned_cols=102 Identities=14% Similarity=0.051 Sum_probs=47.3
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHH-HHHhCCCCEEEEcc-------chHHHHhhh---
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLR-RLVRKGLSCTYTHI-------NAISYIIHE--- 522 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~-eL~~~GI~vT~I~D-------sAv~~iM~~--- 522 (653)
..+.|+|.+-+.++..+|.... ++.-.|++.+ |.+....... ...-.|+++..+.. ..+...+.+
T Consensus 47 ~~~~~~~~~gt~a~~~~~~~l~--~~gd~v~~~~--~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~i~~~~~ 122 (338)
T cd06502 47 KEAALFVPSGTAANQLALAAHT--QPGGSVICHE--TAHIYTDEAGAPEFLSGVKLLPVPGENGKLTPEDLEAAIRPRDD 122 (338)
T ss_pred CCeEEEecCchHHHHHHHHHhc--CCCCeEEEec--CcceeeecCCcHHHHcCceEEeecCCCCcCCHHHHHHHhhccCC
Confidence 4567777766666655555443 3334566543 3322211110 11116777766642 223333321
Q ss_pred -----ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 523 -----VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 523 -----Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
..+|++- .....|+++..---..++-+|+.|++.++|
T Consensus 123 ~~~~~~~~v~l~--~p~n~g~~~~~~~l~~i~~~~~~~~~~liv 164 (338)
T cd06502 123 IHFPPPSLVSLE--NTTEGGTVYPLDELKAISALAKENGLPLHL 164 (338)
T ss_pred CcCCcceEEEEE--eecCCccccCHHHHHHHHHHHHHcCCeEee
Confidence 2233321 122224444222223466678888887776
No 353
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=25.30 E-value=1.9e+02 Score=32.13 Aligned_cols=91 Identities=13% Similarity=0.115 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHHH-cCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEE-EEccchHHHHhhhccEEEEcceeEecCCCeec
Q 006256 464 SSAVEMILQHAHE-LGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCT-YTHINAISYIIHEVTRVFLGASSVLSNGTVCS 541 (653)
Q Consensus 464 Ss~Ve~vL~~A~e-~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT-~I~DsAv~~iM~~Vd~VllGAdaIlaNG~V~N 541 (653)
..+++.++....+ ...+.+|.++-.-+...-.++.+.|.+.||++. .++|....-+.. ... |..++ ++.
T Consensus 138 ~~~~~alv~~~~~~~~~~~~VnliG~~~~~d~~el~~lL~~~Gi~v~~~~~d~~~~~~~~-~~~----a~~~~----~~~ 208 (396)
T cd01979 138 DTVLAALVPRCPEKPSPERSLVLVGSLPDIVEDQLRRELEQLGIPVVGFLPPRRYTDLPV-IGP----GTYVL----GIQ 208 (396)
T ss_pred HHHHHHHhhhcccccCCCCceEEEEeCCcchHHHHHHHHHHcCCeEEEEeCCCChHHhhc-cCc----ceEEE----EeC
Confidence 3455555544322 122344444433333333566688899999997 667765444322 111 00011 223
Q ss_pred ccchHHHHHHHhhCCCCeeeec
Q 006256 542 RVGTACVAMVAYGFHIPVLVCC 563 (653)
Q Consensus 542 KiGT~~lAl~Ak~~~VPVyV~a 563 (653)
..+.+..-.+.++|++|++.+-
T Consensus 209 ~~~~~~A~~Le~r~giP~~~~~ 230 (396)
T cd01979 209 PFLSRTATTLMRRRKCKLLSAP 230 (396)
T ss_pred hhHHHHHHHHHHhcCCCcccCC
Confidence 3445666678899999998753
No 354
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=25.22 E-value=2.3e+02 Score=30.35 Aligned_cols=73 Identities=15% Similarity=0.202 Sum_probs=41.1
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCC-eeEEEEe-CCCCCchHHHHHHHHHhCCCCEEEEccc---------hHHHHhh--h
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGK-QFRVVIV-DSRPKHEGKLLLRRLVRKGLSCTYTHIN---------AISYIIH--E 522 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk-~f~ViV~-ESRP~~EG~~La~eL~~~GI~vT~I~Ds---------Av~~iM~--~ 522 (653)
-.||..|+++.++.++.. .+.|. ..+|.++ -.++...+ ...+.||||.++... .+...++ +
T Consensus 92 i~vl~Sg~gsnl~al~~~-~~~~~~~~~i~~visn~~~~~~-----lA~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~ 165 (286)
T PRK06027 92 VVILVSKEDHCLGDLLWR-WRSGELPVEIAAVISNHDDLRS-----LVERFGIPFHHVPVTKETKAEAEARLLELIDEYQ 165 (286)
T ss_pred EEEEEcCCCCCHHHHHHH-HHcCCCCcEEEEEEEcChhHHH-----HHHHhCCCEEEeccCccccchhHHHHHHHHHHhC
Confidence 357778888999776654 44443 3454433 33443332 156679999987522 2233333 4
Q ss_pred ccEEEEcc-eeEe
Q 006256 523 VTRVFLGA-SSVL 534 (653)
Q Consensus 523 Vd~VllGA-daIl 534 (653)
+|.+++-. -.|+
T Consensus 166 ~Dlivlagy~~il 178 (286)
T PRK06027 166 PDLVVLARYMQIL 178 (286)
T ss_pred CCEEEEecchhhc
Confidence 77776643 3443
No 355
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=25.12 E-value=2.3e+02 Score=31.45 Aligned_cols=103 Identities=17% Similarity=0.163 Sum_probs=69.7
Q ss_pred CCEEEEeC--ChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH----HHHHHHHh-C-CCCEEEEccch--HHHHhhhcc
Q 006256 455 GDVLLTYG--SSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK----LLLRRLVR-K-GLSCTYTHINA--ISYIIHEVT 524 (653)
Q Consensus 455 GdvILT~g--~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~----~La~eL~~-~-GI~vT~I~DsA--v~~iM~~Vd 524 (653)
+--|.-+. +..+++.+|+.|.+.+..+-+=+.++.=.+-|. .+++.+.+ . .|||-+-+|.+ .-.++.-++
T Consensus 17 ~yAVgAfN~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPValHLDHg~~~e~i~~ai~ 96 (347)
T PRK09196 17 GYGVPAFNVNNLEQVQAIMEAADETDSPVILQASAGARKYAGEPFLRHLILAAVEEYPHIPVVMHQDHGNSPATCQRAIQ 96 (347)
T ss_pred CceEEEeeeCCHHHHHHHHHHHHHhCCCEEEECCccHhhhCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHH
Confidence 44444442 456788888888776665444343332222333 34455554 3 48999999976 444444444
Q ss_pred EEEEcceeEecCCCee-----------cccchHHHHHHHhhCCCCee
Q 006256 525 RVFLGASSVLSNGTVC-----------SRVGTACVAMVAYGFHIPVL 560 (653)
Q Consensus 525 ~VllGAdaIlaNG~V~-----------NKiGT~~lAl~Ak~~~VPVy 560 (653)
.|-.+|+-||+-. |--=|..++-.||.+||.|=
T Consensus 97 ---~GftSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv~VE 140 (347)
T PRK09196 97 ---LGFTSVMMDGSLKADGKTPASYEYNVDVTRKVVEMAHACGVSVE 140 (347)
T ss_pred ---cCCCEEEecCCCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 5999999999998 88899999999999998775
No 356
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=25.09 E-value=1.4e+02 Score=29.26 Aligned_cols=59 Identities=19% Similarity=0.285 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHhccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHH
Q 006256 438 ILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLL 497 (653)
Q Consensus 438 ~~a~~~Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~L 497 (653)
....+.+.+...++-.+|..|.-||-|.-=..+|.. ..-+.++-.||+|.-|..+|+-+
T Consensus 51 ~~~~~~l~~~L~~~~~~gk~I~~yGA~~kg~tlln~-~g~~~~~I~~vvD~np~K~G~~~ 109 (160)
T PF08484_consen 51 EQSKAELREFLEKLKAEGKRIAGYGAGAKGNTLLNY-FGLDNDLIDYVVDDNPLKQGKYL 109 (160)
T ss_dssp HHHHHHHHHHHHHHHHTT--EEEE---SHHHHHHHH-HT--TTTS--EEES-GGGTTEE-
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEECcchHHHHHHHH-hCCCcceeEEEEeCChhhcCccc
Confidence 334445556666666789999999987643233443 33334556778888899999754
No 357
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=25.02 E-value=3.5e+02 Score=26.75 Aligned_cols=97 Identities=15% Similarity=0.100 Sum_probs=52.4
Q ss_pred CCEEEEeCChHHHHHH-HHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEE-cc----chHHHHhhh------
Q 006256 455 GDVLLTYGSSSAVEMI-LQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT-HI----NAISYIIHE------ 522 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~v-L~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I-~D----sAv~~iM~~------ 522 (653)
|.+||+.|-+.-+..- .+...++| .+|+++..|.......+..++...|-.+.++ .| ..+..++.+
T Consensus 4 ~~~vlItGa~g~iG~~~a~~l~~~g--~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (250)
T PRK08063 4 GKVALVTGSSRGIGKAIALRLAEEG--YDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEEFG 81 (250)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC--CEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4577777776655333 34444444 4666666666555666677777766555443 33 233444443
Q ss_pred -ccEEEEcceeEecCCCe-------------ecccchHHHHHHHhh
Q 006256 523 -VTRVFLGASSVLSNGTV-------------CSRVGTACVAMVAYG 554 (653)
Q Consensus 523 -Vd~VllGAdaIlaNG~V-------------~NKiGT~~lAl~Ak~ 554 (653)
+|.||-.|-. ...+.. .|..|++.++-.+..
T Consensus 82 ~id~vi~~ag~-~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~ 126 (250)
T PRK08063 82 RLDVFVNNAAS-GVLRPAMELEESHWDWTMNINAKALLFCAQEAAK 126 (250)
T ss_pred CCCEEEECCCC-CCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5666554421 111111 566677777765543
No 358
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=24.89 E-value=8.9e+02 Score=26.04 Aligned_cols=102 Identities=14% Similarity=0.157 Sum_probs=50.1
Q ss_pred CCCEEEEeCChHHHHHHHHHHHH----cCCeeEEEEeCC-CCCchHHHHHHHHHhCCCCEEEEccc--------hHHHHh
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHE----LGKQFRVVIVDS-RPKHEGKLLLRRLVRKGLSCTYTHIN--------AISYII 520 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e----~gk~f~ViV~ES-RP~~EG~~La~eL~~~GI~vT~I~Ds--------Av~~iM 520 (653)
..++++|.|.+..+..+++.+.. ....-+|++.+. .|-+.. ....+...|+++.++... .+...+
T Consensus 60 ~~~i~~t~g~teal~~~~~~~~~~~~~~~~~~~vi~~~~e~ps~~~--~~~~~~~~G~~v~~v~~~~~g~~d~~~l~~~i 137 (382)
T TIGR03403 60 LDDIIITSCATESNNWVLKGVYFDEILKGGKNHIITTEVEHPAVRA--TCAFLESLGVEVTYLPINEQGTITAEQVREAI 137 (382)
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHhhcccCCCCEEEEcCCccHHHHH--HHHHHHHCCCEEEEEecCCCCCCCHHHHHHhc
Confidence 34577777766666555554321 122235666543 233322 224456689988888521 122222
Q ss_pred h-hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 521 H-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 521 ~-~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
. +...|++ ...=...|.+.. + ..++-+|+.++++++|
T Consensus 138 ~~~t~lv~~-~~~~n~tG~~~~-~--~~I~~la~~~g~~~iv 175 (382)
T TIGR03403 138 TEKTALVSV-MWANNETGMIFP-I--KEIGEICKERGVLFHT 175 (382)
T ss_pred ccCCeEEEE-EcccCCCccccC-H--HHHHHHHHHcCCEEEE
Confidence 2 2233333 211112333332 1 3577788899987775
No 359
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=24.73 E-value=5.1e+02 Score=24.82 Aligned_cols=41 Identities=12% Similarity=0.241 Sum_probs=23.4
Q ss_pred EEEeCChHHHHHHHHHHHHcC-CeeEEEEeCCCCCchHHHHH
Q 006256 458 LLTYGSSSAVEMILQHAHELG-KQFRVVIVDSRPKHEGKLLL 498 (653)
Q Consensus 458 ILT~g~Ss~Ve~vL~~A~e~g-k~f~ViV~ESRP~~EG~~La 498 (653)
|.||.....+..+|....++- ..+.|+|+|..+..+-..++
T Consensus 5 i~~~n~~~~l~~~l~sl~~q~~~~~evivvdd~s~d~~~~~~ 46 (221)
T cd02522 5 IPTLNEAENLPRLLASLRRLNPLPLEIIVVDGGSTDGTVAIA 46 (221)
T ss_pred EEccCcHHHHHHHHHHHHhccCCCcEEEEEeCCCCccHHHHH
Confidence 445555556666666555433 45778877766654444433
No 360
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=24.71 E-value=8.1e+02 Score=27.01 Aligned_cols=96 Identities=20% Similarity=0.236 Sum_probs=50.4
Q ss_pred EEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHH-HHHHhCCCCEEEEccc---hHHHHhh-hccEEEEcc
Q 006256 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLGA 530 (653)
Q Consensus 457 vILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La-~eL~~~GI~vT~I~Ds---Av~~iM~-~Vd~VllGA 530 (653)
.|++-+.+.++..++ .+...| -+|++. .|.+.|. .+. ..+...||+++++... .+...+. ++.+|++-.
T Consensus 68 al~~~SG~~Al~~~l-~~l~pG--d~Vi~~--~~~y~~t~~~~~~~~~~~gi~v~~vd~~d~e~l~~ai~~~t~lV~les 142 (380)
T PRK06176 68 GFAFASGLAGIHAVF-SLFQSG--DHVLLG--DDVYGGTFRLFDKVLVKNGLSCTIIDTSDLSQIKKAIKPNTKALYLET 142 (380)
T ss_pred EEEECCHHHHHHHHH-HHcCCC--CEEEEc--CCChhHHHHHHHHHHHhcCeEEEEcCCCCHHHHHHhcCcCceEEEEEC
Confidence 454433344665444 444434 356653 3555444 333 4567789998877432 3333333 455565511
Q ss_pred eeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 531 SSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 531 daIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
---..|.+.. --.++-+|++|+++|+|
T Consensus 143 -P~Nptg~~~d---i~~I~~la~~~gi~viv 169 (380)
T PRK06176 143 -PSNPLLKITD---LAQCASVAKDHGLLTIV 169 (380)
T ss_pred -CCCCCceecC---HHHHHHHHHHcCCEEEE
Confidence 1111233222 33678889999987776
No 361
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=24.67 E-value=6.5e+02 Score=24.38 Aligned_cols=106 Identities=16% Similarity=0.240 Sum_probs=57.3
Q ss_pred EEEeCChHHHHHHHHHHHHcCCeeEEEEeCCC--CCchHHHHHHHHHhCCCCEEEEc-c----chHHHHhh-------hc
Q 006256 458 LLTYGSSSAVEMILQHAHELGKQFRVVIVDSR--PKHEGKLLLRRLVRKGLSCTYTH-I----NAISYIIH-------EV 523 (653)
Q Consensus 458 ILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESR--P~~EG~~La~eL~~~GI~vT~I~-D----sAv~~iM~-------~V 523 (653)
|+|=|.+..=..+.+...+++ .-+|+++-.+ +..+..++..+|.+.|..++|+. | ..+..++. .+
T Consensus 4 litGG~gglg~~la~~La~~~-~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~~~~i 82 (181)
T PF08659_consen 4 LITGGLGGLGQSLARWLAERG-ARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQRFGPI 82 (181)
T ss_dssp EEETTTSHHHHHHHHHHHHTT--SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTTSS-E
T ss_pred EEECCccHHHHHHHHHHHHcC-CCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhccCCc
Confidence 344444444334455555666 4466666555 45567778899999999999984 3 23444443 46
Q ss_pred cEEEEcceeEecCCCeeccc-------------chHHHHHHHhhCCCCeeeeccc
Q 006256 524 TRVFLGASSVLSNGTVCSRV-------------GTACVAMVAYGFHIPVLVCCEA 565 (653)
Q Consensus 524 d~VllGAdaIlaNG~V~NKi-------------GT~~lAl~Ak~~~VPVyV~aet 565 (653)
+-||-+|-. +.++.+.++. |+..+.-+...+.+-|+|++.+
T Consensus 83 ~gVih~ag~-~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~~~l~~~i~~SS 136 (181)
T PF08659_consen 83 DGVIHAAGV-LADAPIQDQTPDEFDAVLAPKVRGLWNLHEALENRPLDFFILFSS 136 (181)
T ss_dssp EEEEE--------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTTTTTSEEEEEEE
T ss_pred ceeeeeeee-ecccccccCCHHHHHHHHhhhhhHHHHHHHHhhcCCCCeEEEECC
Confidence 677777654 5576666632 4555555555567777777654
No 362
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=24.63 E-value=9e+02 Score=27.06 Aligned_cols=112 Identities=16% Similarity=0.112 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCC--CCCchHHHHHHHHHhCCCCE
Q 006256 431 RFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDS--RPKHEGKLLLRRLVRKGLSC 508 (653)
Q Consensus 431 ~fi~E~i~~a~~~Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ES--RP~~EG~~La~eL~~~GI~v 508 (653)
++++++....+..+-.| .++. | .+..++....+..+.+-+.+.|-..-.+++.. +++. ......|...|+.+
T Consensus 260 ~~~~~e~~~~~~~ld~~--~~l~-g-kv~v~g~~~~~~~la~~L~elGmevv~~~t~~~~~~~~--~~~~~~l~~~~~~v 333 (416)
T cd01980 260 KVANEEKAAAKGAIRAF--SPIK-G-RVLVSGYEGNELLVARLLIESGAEVPYVSTSIPKTSLS--APDYEWLSALGVEV 333 (416)
T ss_pred HHHHHHHHHHHHHHhhH--HhhC-c-eEEEECCCchhHHHHHHHHHcCCEEEEEecCCCChhhh--HHHHHHHHhcCCcc
Confidence 34444444444445334 2454 6 56667766555556666667676644444432 2222 23333454455443
Q ss_pred EEEccc-hHHHHhh--hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeecc
Q 006256 509 TYTHIN-AISYIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCE 564 (653)
Q Consensus 509 T~I~Ds-Av~~iM~--~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~ae 564 (653)
.+-.|- .....+. ++|++| .| .....+|++.+||++-+..
T Consensus 334 ~~~~~~~~~~~~~~~~~pDl~I-------g~---------s~~~~~a~~~giP~~r~~~ 376 (416)
T cd01980 334 RYRKSLEDDIAAVEEYRPDLAI-------GT---------TPLVQYAKEKGIPALYYTN 376 (416)
T ss_pred ccCCCHHHHHHHHhhcCCCEEE-------eC---------ChhhHHHHHhCCCEEEecC
Confidence 222221 1122222 355543 33 2245689999999987664
No 363
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=24.61 E-value=1.9e+02 Score=31.22 Aligned_cols=72 Identities=15% Similarity=0.165 Sum_probs=44.6
Q ss_pred EEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhh--hccEEEEcceeEe
Q 006256 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIH--EVTRVFLGASSVL 534 (653)
Q Consensus 457 vILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~--~Vd~VllGAdaIl 534 (653)
.||..|.+..-..+++.|.+. .++|++++..|..-+..++.+ -+...+....++..+.+ ++|.|+.+.+.+.
T Consensus 1 kililG~g~~~~~l~~aa~~~--G~~v~~~d~~~~~~~~~~ad~----~~~~~~~d~~~l~~~~~~~~id~v~~~~e~v~ 74 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQRL--GVEVIAVDRYANAPAMQVAHR----SYVINMLDGDALRAVIEREKPDYIVPEIEAIA 74 (380)
T ss_pred CEEEECCCHHHHHHHHHHHHc--CCEEEEEeCCCCCchhhhCce----EEEcCCCCHHHHHHHHHHhCCCEEEeccCccC
Confidence 378889887665777777764 568999999888766654421 11111111123444444 5898888876654
No 364
>PRK15029 arginine decarboxylase; Provisional
Probab=24.60 E-value=2.5e+02 Score=34.37 Aligned_cols=83 Identities=13% Similarity=0.149 Sum_probs=53.1
Q ss_pred EEEEeCCCCCc-------hHHHHHHHHHhCCCCEEEEccc--hHHHHhh--hccEEEEcceeEecCCCeecccchHHHHH
Q 006256 482 RVVIVDSRPKH-------EGKLLLRRLVRKGLSCTYTHIN--AISYIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAM 550 (653)
Q Consensus 482 ~ViV~ESRP~~-------EG~~La~eL~~~GI~vT~I~Ds--Av~~iM~--~Vd~VllGAdaIlaNG~V~NKiGT~~lAl 550 (653)
+|+++|..+.. -...|...|.+.|..|....+. ++..+-. ..|+||+ |..+.+++-+. .|...+--
T Consensus 2 kILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~~~~DlVLL--D~~LPd~dG~~-~~~ell~~ 78 (755)
T PRK15029 2 KVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMF--SYQMEHPDEHQ-NVRQLIGK 78 (755)
T ss_pred eEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCcEEEE--ECCCCCCccch-hHHHHHHH
Confidence 57788877753 3445568899999999988754 3444433 4899999 56677776332 11222222
Q ss_pred HHh-hCCCCeeeeccccc
Q 006256 551 VAY-GFHIPVLVCCEAYK 567 (653)
Q Consensus 551 ~Ak-~~~VPVyV~aetyK 567 (653)
+-+ ..++|||+++..-+
T Consensus 79 IR~~~~~iPIIlLTar~~ 96 (755)
T PRK15029 79 LHERQQNVPVFLLGDREK 96 (755)
T ss_pred HHhhCCCCCEEEEEcCCc
Confidence 322 35899999987664
No 365
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=24.59 E-value=7.1e+02 Score=27.10 Aligned_cols=98 Identities=13% Similarity=0.034 Sum_probs=52.1
Q ss_pred EEEeCChHHHHHHHHHHH--HcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc----cc------hHHHHhh---h
Q 006256 458 LLTYGSSSAVEMILQHAH--ELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH----IN------AISYIIH---E 522 (653)
Q Consensus 458 ILT~g~Ss~Ve~vL~~A~--e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~----Ds------Av~~iM~---~ 522 (653)
|+|.|.+.++..++.... +.|. +|+ +++ |.+.+...+.+ ..|+.+..+. |. .+-..+. .
T Consensus 98 ~iT~Ga~~al~~~~~~l~~~~pGd--~Vl-v~~-P~y~~~~~~~~--~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~ 171 (396)
T PRK09257 98 VQTPGGTGALRVGADFLKRAFPDA--KVW-VSD-PTWPNHRAIFE--AAGLEVKTYPYYDAATKGLDFDAMLADLSQAPA 171 (396)
T ss_pred EecCCccHHHHHHHHHHHHhCCCC--eEE-ECC-CCcccHHHHHH--HcCCcEEEEeccccccCccCHHHHHHHHHhCCC
Confidence 889999888755543322 3343 344 343 77777655433 4677776653 11 1112221 1
Q ss_pred ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 523 Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
.+++++=..-=-..|.++++-=-..++-+|+.|++.++.
T Consensus 172 ~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~ 210 (396)
T PRK09257 172 GDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFL 210 (396)
T ss_pred CCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEE
Confidence 134444332223344444444456777788999987654
No 366
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=24.56 E-value=2e+02 Score=32.25 Aligned_cols=49 Identities=20% Similarity=0.310 Sum_probs=39.7
Q ss_pred ccchHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeec
Q 006256 512 HINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (653)
Q Consensus 512 ~DsAv~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~a 563 (653)
+-.++.++|..=+. .-|.++.=|.|..-+|+-.-.-++++|++|++|..
T Consensus 171 ~PPa~~~ll~~~~~---~idgfi~PGHVstI~G~~~y~~l~~~y~~P~VVaG 219 (364)
T PRK15062 171 VPPAMRALLEDPEL---RIDGFIAPGHVSTIIGTEPYEFLAEEYGIPVVVAG 219 (364)
T ss_pred cHHHHHHHHcCCCC---CccEEEecCEeEEEeccchhHHHHHHcCCCeEEec
Confidence 45577777764332 55778888999999999999999999999998865
No 367
>PRK15418 transcriptional regulator LsrR; Provisional
Probab=24.54 E-value=5.2e+02 Score=28.07 Aligned_cols=88 Identities=17% Similarity=0.146 Sum_probs=49.7
Q ss_pred HHHHHHhccCCCEEEEeCChHHHHHHHHHHHH--cCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc-----h--
Q 006256 445 VKHAVTKIRDGDVLLTYGSSSAVEMILQHAHE--LGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-----A-- 515 (653)
Q Consensus 445 a~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e--~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds-----A-- 515 (653)
+++..+.+++|+ ++-.+|++++..++.+... ..++.+|+-+-+-....... ..+|. .+..+.+++.. .
T Consensus 106 A~~L~~~l~~~~-~IGvswG~Tl~~~~~~l~~~~~~~~~~vV~l~Gg~~~~~~~-~~~~~-~~~~~~~l~aP~~v~s~e~ 182 (318)
T PRK15418 106 AHMLMSLLQPQQ-LLAVGFGEATMNTLQHLSGFISSQQIRLVTLSGGVGPYMTG-IGQLD-AACSVSIIPAPLRASSAEI 182 (318)
T ss_pred HHHHHHhcCCCC-EEEEcchHHHHHHHHhccccCCCCCCEEEEcCCCCCcchhh-HHHHh-ccCCeEEeccCeecCCHHH
Confidence 444555667877 4677999999888866542 33456666443332211111 22342 34445554333 2
Q ss_pred ---------H---HHHhhhccEEEEcceeEec
Q 006256 516 ---------I---SYIIHEVTRVFLGASSVLS 535 (653)
Q Consensus 516 ---------v---~~iM~~Vd~VllGAdaIla 535 (653)
+ ...++++|.+|+|.=.+..
T Consensus 183 ~~~l~~e~~i~~vl~~~~~~Dial~GIG~~~~ 214 (318)
T PRK15418 183 ARTLRNENSVRDVMLAAQAADVAIVGIGAVNQ 214 (318)
T ss_pred HHHHHhChHHHHHHHHHHhCCEEEEEecCCCC
Confidence 2 2233489999999887765
No 368
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=24.52 E-value=1.1e+03 Score=26.96 Aligned_cols=101 Identities=9% Similarity=0.107 Sum_probs=54.0
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCC-CCchHHHHHHHHHh-CCCCEEEEccchHHHHhhhccEEEEcce
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSR-PKHEGKLLLRRLVR-KGLSCTYTHINAISYIIHEVTRVFLGAS 531 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESR-P~~EG~~La~eL~~-~GI~vT~I~DsAv~~iM~~Vd~VllGAd 531 (653)
.|..+..++.+..+..+..-+.+.|-...++++-+. +........++|.+ .+.++.++.+.-..-+...+...-..+|
T Consensus 311 ~Gkrvai~~~~~~~~~l~~~l~elGm~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~~~d~~~l~~~i~~~~~~~D 390 (461)
T TIGR02931 311 ADKRVAIYGNPDLVIGLAEFCLDLEMKPVLLLLGDDNSGYVDDPRIKALQENVDYDMEIVTNADFWELESRIKNQGLELD 390 (461)
T ss_pred CCCeEEEEeCHHHHHHHHHHHHHCCCEEEEEEECCCCcccchhHHHHHHHhhCCCCceEEeCCCHHHHHHHHHhcCCCCC
Confidence 688999998887665666656677887776665543 33323334455533 3334444444333333221111011133
Q ss_pred eEecCCCeecccchHHHHHHHhhCCCCeeeec
Q 006256 532 SVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (653)
Q Consensus 532 aIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~a 563 (653)
-++.| ..-..+|+..+||++.++
T Consensus 391 liig~---------s~~~~~a~k~gip~~~~g 413 (461)
T TIGR02931 391 LILGH---------SKGRFISIDYNIPMVRVG 413 (461)
T ss_pred EEEEC---------cchHHHHHHcCCCEEEec
Confidence 33322 223467889999999773
No 369
>PRK00770 deoxyhypusine synthase-like protein; Provisional
Probab=24.44 E-value=1.2e+02 Score=34.26 Aligned_cols=111 Identities=13% Similarity=0.159 Sum_probs=62.0
Q ss_pred cCCCEEEEeCC---hHHHH-HHHHHHHHcCCeeEEEEeCC------------CCCchHHHHH--HHHHhCCCCE---EEE
Q 006256 453 RDGDVLLTYGS---SSAVE-MILQHAHELGKQFRVVIVDS------------RPKHEGKLLL--RRLVRKGLSC---TYT 511 (653)
Q Consensus 453 ~dGdvILT~g~---Ss~Ve-~vL~~A~e~gk~f~ViV~ES------------RP~~EG~~La--~eL~~~GI~v---T~I 511 (653)
.+..++||++. ++-+. .+|..+.+ .+.+.++|+-. -|.+.|...+ .+|.+.||.= ++|
T Consensus 50 ~~~tvfLtltgamisaGLr~~ii~~LIr-~g~VD~IVTTGAnl~hD~~~alg~~~y~G~~~~dd~~Lr~~GinRI~dv~i 128 (384)
T PRK00770 50 DGVTVGLTLSGAMTPAGFGVSALAPLIE-AGFIDWIISTGANLYHDLHYALGLPLFAGHPFVDDVKLREEGIIRIYDIIF 128 (384)
T ss_pred cCCcEEEEeccchhhhhcChHHHHHHHH-cCCccEEEcCCccHHHHHHHHhCCCcccCCCCCCHHHHHHcCCCcccccCc
Confidence 45677888875 34455 57777776 44678887632 3666776444 6889999653 445
Q ss_pred ccchHHHHhhhccEEEEcce--eEecCCCeecccchH-------------HHHHHHhhCCCCeeeecc
Q 006256 512 HINAISYIIHEVTRVFLGAS--SVLSNGTVCSRVGTA-------------CVAMVAYGFHIPVLVCCE 564 (653)
Q Consensus 512 ~DsAv~~iM~~Vd~VllGAd--aIlaNG~V~NKiGT~-------------~lAl~Ak~~~VPVyV~ae 564 (653)
+....-.+-+-++.++=++. ..+.-+.++..+|-+ .+-..|..++|||||=+-
T Consensus 129 p~e~~~~~e~~l~~il~~~~~~~~~s~~E~i~~LGk~i~~~~~~~~~~e~SiL~~Ayk~~IPVf~Pa~ 196 (384)
T PRK00770 129 DYDVLLETDAFIREILKAEPFQKRMGTAEFHYLLGKYVREVEKQLGVPHKSLLATAYEYGVPIYTSSP 196 (384)
T ss_pred ChHHHHHHHHHHHHHHHhccccCCccHHHHHHHHHHHhhhhcccCCCCcccHHHHHHHcCCCEECCCc
Confidence 44333333333444443332 111122222233333 234567788999998554
No 370
>TIGR02434 CobF precorrin-6A synthase (deacetylating). This model identifies CobF in High GC gram positive, alphaproteobacteria and pseudomonas-related species.
Probab=24.22 E-value=3.2e+02 Score=28.73 Aligned_cols=24 Identities=17% Similarity=0.012 Sum_probs=11.8
Q ss_pred eecccchHHHHHHHhhCCCCeeeec
Q 006256 539 VCSRVGTACVAMVAYGFHIPVLVCC 563 (653)
Q Consensus 539 V~NKiGT~~lAl~Ak~~~VPVyV~a 563 (653)
++-+.|......+++ -+.+++||.
T Consensus 183 vilk~~~~~~~~l~~-~~~~~~v~e 206 (249)
T TIGR02434 183 VVMLDGEQAFQRVDP-EDIDIYWGA 206 (249)
T ss_pred EEEECCccCHHHhcC-CCCEEEEEE
Confidence 444555554444443 355666554
No 371
>PF08032 SpoU_sub_bind: RNA 2'-O ribose methyltransferase substrate binding; InterPro: IPR013123 Most cellular RNAs undergo a number of post-transcriptional nucleoside modifications. While the biological role of many of these modifications is unknown, some have been shown to be necessary for cell growth or for resistance to antibiotics [, ]. One of the most common modifications is 2'O-ribose methylation catalysed by the RNA 2'O-ribose methyltransferases, a large enzyme family that transfer a methyl group from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of the backbone ribose []. This entry represents a substrate-binding domain found in a variety of bacterial and mitochondrial RNA 2'-O ribose methyltransferases. These include the bacterial enzyme RlmB, which specifically methylates the conserved nucleotide guanosine 2251 in 23S RNA, and PET56, which specifically methylates the equivalent guanosine in mitochondrial 21S RNA [, ]. This domain forms a four-stranded mixed beta sheet similar to that found in other RNA binding enzymes []. It shows considerable conformational flexibility which is thought to be important for its ability to bind RNA.; GO: 0008168 methyltransferase activity; PDB: 1GZ0_D 1IPA_A.
Probab=24.22 E-value=1.9e+02 Score=23.77 Aligned_cols=51 Identities=12% Similarity=0.203 Sum_probs=32.5
Q ss_pred HHHHHHHcCC-eeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHh
Q 006256 470 ILQHAHELGK-QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYII 520 (653)
Q Consensus 470 vL~~A~e~gk-~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM 520 (653)
.+.+|.+.+. -.+||+.+..-...-..+...+.+.||++.++++.-+..+-
T Consensus 7 ~V~eaL~~~~~i~~l~~~~~~~~~~~~~i~~~~~~~~i~v~~v~~~~l~~ls 58 (76)
T PF08032_consen 7 AVEEALKSGPRIKKLFVTEEKADKRIKEILKLAKKKGIPVYEVSKKVLDKLS 58 (76)
T ss_dssp HHHHHHHCTGGEEEEEEETT---CCTHHHHHHHHHCT-EEEEE-HHHHHHCT
T ss_pred HHHHHHcCCCCccEEEEEcCccchhHHHHHHHHHHcCCeEEEeCHHHHHHHc
Confidence 3455555554 56788888833333457788889999999999887765543
No 372
>PLN00175 aminotransferase family protein; Provisional
Probab=24.20 E-value=6.9e+02 Score=27.65 Aligned_cols=91 Identities=14% Similarity=0.188 Sum_probs=50.2
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc---------hHHHHh-hhccE
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---------AISYII-HEVTR 525 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds---------Av~~iM-~~Vd~ 525 (653)
.+++|.|.+.++..++....+.| -.|+|.+ |.+.+...+ +...|+.+..+... .+-..+ +++..
T Consensus 117 ~I~vt~G~~~al~~~~~~l~~~g--d~Vlv~~--P~y~~~~~~--~~~~g~~~~~v~~~~~~~~~~~~~l~~~~~~~~k~ 190 (413)
T PLN00175 117 EVTVTSGCTEAIAATILGLINPG--DEVILFA--PFYDSYEAT--LSMAGAKIKTVTLRPPDFAVPEDELKAAFTSKTRA 190 (413)
T ss_pred CEEEeCCHHHHHHHHHHHhCCCC--CEEEEeC--CCchhHHHH--HHHcCCEEEEEECCcccCCCCHHHHHHhcCcCceE
Confidence 57788888777765555443333 4566654 776655433 44578887777421 111111 13333
Q ss_pred EEEcceeEecCCCeecccchH-------HHHHHHhhCCCCee
Q 006256 526 VFLGASSVLSNGTVCSRVGTA-------CVAMVAYGFHIPVL 560 (653)
Q Consensus 526 VllGAdaIlaNG~V~NKiGT~-------~lAl~Ak~~~VPVy 560 (653)
|++ + ..-|..|+. .++-+|+.|++.++
T Consensus 191 i~i-------~-~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii 224 (413)
T PLN00175 191 ILI-------N-TPHNPTGKMFTREELELIASLCKENDVLAF 224 (413)
T ss_pred EEe-------c-CCCCCCCcCCCHHHHHHHHHHHHHcCcEEE
Confidence 332 1 234666664 46777888887444
No 373
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=24.16 E-value=5e+02 Score=28.23 Aligned_cols=61 Identities=20% Similarity=0.281 Sum_probs=37.6
Q ss_pred HHHHhCCCCEEEEccc--------hHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhC----CCCeeeecc
Q 006256 499 RRLVRKGLSCTYTHIN--------AISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGF----HIPVLVCCE 564 (653)
Q Consensus 499 ~eL~~~GI~vT~I~Ds--------Av~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~----~VPVyV~ae 564 (653)
+.|.+.||++++|... .+...+++...|+ ++.++....-.|.....+++.+. ..|+.-++-
T Consensus 221 ~~L~~~Gi~v~vi~~~~l~Pld~~~i~~~~~~~~~vv-----~vEe~~~~gGlg~~la~~l~~~~~~~~~~~i~r~~~ 293 (327)
T PRK09212 221 ELLEKEGISVEVIDLRTLRPLDTETIIESVKKTNRLV-----VVEEGWPFAGVGAEIAALIMKEAFDYLDAPVERVTG 293 (327)
T ss_pred HHHHhcCCcEEEEEEecCCCCCHHHHHHHHHhCCeEE-----EEcCCCCCCCHHHHHHHHHHHhCccccCCCeEEEcC
Confidence 3455556666554322 3445556777775 56777777778888888888774 335554443
No 374
>PF07046 CRA_rpt: Cytoplasmic repetitive antigen (CRA) like repeat; InterPro: IPR009761 This family consists of several repeats of around 42 residues in length. These repeated sequences are found in multiple copies in Trypanosoma cruzi antigens, Q26907 from SWISSPROT contains 23 copies of this repeat [].
Probab=24.15 E-value=86 Score=24.33 Aligned_cols=27 Identities=44% Similarity=0.423 Sum_probs=19.2
Q ss_pred chhhccHHHHHHHHHHHHHHHHHHhhc
Q 006256 191 LKEKTSKAERRAIQEAQRAAKAAAKAE 217 (653)
Q Consensus 191 ~~~~~~kAERRa~QEaqRAaKaa~k~~ 217 (653)
.|.+...|-|.+.-|.||||.+++..+
T Consensus 3 eK~kaaEa~k~aEaeKqraAEA~k~aE 29 (42)
T PF07046_consen 3 EKRKAAEATKVAEAEKQRAAEATKAAE 29 (42)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666777788888888888776544
No 375
>PRK02948 cysteine desulfurase; Provisional
Probab=24.12 E-value=9.1e+02 Score=25.90 Aligned_cols=103 Identities=11% Similarity=0.103 Sum_probs=47.7
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHc--CCeeEEEEeCCCCCchHH-HHHHHHHhCCCCEEEEc-cc----hHHHHhhh---
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHEL--GKQFRVVIVDSRPKHEGK-LLLRRLVRKGLSCTYTH-IN----AISYIIHE--- 522 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~--gk~f~ViV~ESRP~~EG~-~La~eL~~~GI~vT~I~-Ds----Av~~iM~~--- 522 (653)
...+++|-|.+.++..++..+.+. +..-.|++. ...+-.. ...+.+...|+++..+. |. .+..+.+.
T Consensus 60 ~~~i~~~~g~t~a~~~~~~~~~~~~~~~g~~vv~~--~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~ 137 (381)
T PRK02948 60 EQGIYFTSGGTESNYLAIQSLLNALPQNKKHIITT--PMEHASIHSYFQSLESQGYTVTEIPVDKSGLIRLVDLERAITP 137 (381)
T ss_pred CCeEEEeCcHHHHHHHHHHHHHHhccCCCCEEEEC--CcccHHHHHHHHHHHhCCCEEEEEeeCCCCCCCHHHHHHhcCC
Confidence 345666655555555545444321 222344443 2222222 22345666798888875 21 12222221
Q ss_pred ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 523 Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
-+++++=.+.-...|.+.. + -.++-+|+.+++.|+|
T Consensus 138 ~~~lv~~~~~~n~tG~~~~-~--~~I~~l~~~~~~~viv 173 (381)
T PRK02948 138 DTVLASIQHANSEIGTIQP-I--AEIGALLKKYNVLFHS 173 (381)
T ss_pred CCEEEEEECCcCCcEeehh-H--HHHHHHHHHcCCEEEE
Confidence 1222222222223344433 2 2466778888887765
No 376
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=24.09 E-value=1.4e+02 Score=34.14 Aligned_cols=69 Identities=22% Similarity=0.255 Sum_probs=41.6
Q ss_pred CCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEE
Q 006256 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFL 528 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~Vll 528 (653)
|..|+.+|.+..=..+.+..++.| .+|+|.|.||..++.... .|...||.+..-.... .....+|.|++
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G--~~v~v~D~~~~~~~~~~~-~~~~~~i~~~~g~~~~--~~~~~~d~vV~ 75 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLG--AEVTVSDDRPAPEGLAAQ-PLLLEGIEVELGSHDD--EDLAEFDLVVK 75 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCC--CeEEEEcCCCCccchhhh-hhhccCceeecCccch--hccccCCEEEE
Confidence 778999987643224445555545 789999999988655444 5666666665543222 23334555543
No 377
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=24.07 E-value=4.3e+02 Score=26.07 Aligned_cols=52 Identities=13% Similarity=0.188 Sum_probs=32.5
Q ss_pred CCCEEEEeCChHHHHH-HHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcc
Q 006256 454 DGDVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~-vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGA 530 (653)
.|..||..|.+..+.. +...+.++|. +|+++..+. ..+...|+++|.||...
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~--~V~v~~r~~-----------------------~~l~~~l~~aDiVIsat 95 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNA--TVTVCHSKT-----------------------KNLKEHTKQADIVIVAV 95 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCC--EEEEEECCc-----------------------hhHHHHHhhCCEEEEcC
Confidence 5778888888876655 3344444443 566665431 23455788899998754
No 378
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=24.04 E-value=1e+02 Score=27.47 Aligned_cols=87 Identities=14% Similarity=0.040 Sum_probs=51.1
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcceeE
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSV 533 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAdaI 533 (653)
.|..||..|.+.+-..-++.+.+.|-+.+||-.+. ...+ ..+ +++.... ...|..+++||+-.+-
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~-------~~~~----~~i--~~~~~~~-~~~l~~~~lV~~at~d- 70 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI-------EFSE----GLI--QLIRREF-EEDLDGADLVFAATDD- 70 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE-------HHHH----TSC--EEEESS--GGGCTTESEEEE-SS--
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch-------hhhh----hHH--HHHhhhH-HHHHhhheEEEecCCC-
Confidence 47789999998876666777777776666665444 1111 222 2333221 1235566666654322
Q ss_pred ecCCCeecccchHHHHHHHhhCCCCeeeec
Q 006256 534 LSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (653)
Q Consensus 534 laNG~V~NKiGT~~lAl~Ak~~~VPVyV~a 563 (653)
..-.-.++..|+.+++||.++-
T Consensus 71 --------~~~n~~i~~~a~~~~i~vn~~D 92 (103)
T PF13241_consen 71 --------PELNEAIYADARARGILVNVVD 92 (103)
T ss_dssp --------HHHHHHHHHHHHHTTSEEEETT
T ss_pred --------HHHHHHHHHHHhhCCEEEEECC
Confidence 2233568889999999999865
No 379
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=23.82 E-value=4.5e+02 Score=29.92 Aligned_cols=71 Identities=17% Similarity=0.171 Sum_probs=40.8
Q ss_pred CCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcc
Q 006256 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGA 530 (653)
+..|+.+|.+..=..+.+.+++.| ++|++.|.++..+. ...|.+.|+.+.+....-....+..+|.||+..
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~~G--~~v~~~D~~~~~~~---~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp 77 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCARHG--ARLRVADTREAPPN---LAALRAELPDAEFVGGPFDPALLDGVDLVALSP 77 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCC--CEEEEEcCCCCchh---HHHHHhhcCCcEEEeCCCchhHhcCCCEEEECC
Confidence 556888876543223445555555 58899998875432 345777755544433221122345788887754
No 380
>PRK07505 hypothetical protein; Provisional
Probab=23.81 E-value=7.8e+02 Score=26.89 Aligned_cols=101 Identities=17% Similarity=0.118 Sum_probs=51.4
Q ss_pred CEEEEeCChHHHHHHHHHHHH---cCCeeEEEEeCCCCCchHHHH-HHHHHhCCCCEEEEcc---chHHHHhhhccEEEE
Q 006256 456 DVLLTYGSSSAVEMILQHAHE---LGKQFRVVIVDSRPKHEGKLL-LRRLVRKGLSCTYTHI---NAISYIIHEVTRVFL 528 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e---~gk~f~ViV~ESRP~~EG~~L-a~eL~~~GI~vT~I~D---sAv~~iM~~Vd~Vll 528 (653)
+.+++.+.+.+++.+|.-+.. .+.+..|++.+. .+-|.-. ...+...+.++..+.- ..+...+..-+..++
T Consensus 107 ~~~~~~sG~~a~~~ai~~~~~~~~~~~~~~vi~~~~--~~H~s~~~~~~~~~~~~~v~~~~~~d~~~l~~~~~~~~~~~v 184 (402)
T PRK07505 107 SVLTFTSCSAAHLGILPLLASGHLTGGVPPHMVFDK--NAHASLNILKGICADETEVETIDHNDLDALEDICKTNKTVAY 184 (402)
T ss_pred CEEEECChHHHHHHHHHHHHhcccCCCCCCEEEEch--hhhHhHHhhhhhhhcCCeEEEeCCCCHHHHHHHHhcCCCEEE
Confidence 666666667777777755432 112234555542 1223211 1223334556665542 233344432223333
Q ss_pred cceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 529 GASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 529 GAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
=++-+...|.++. -..+.-+|++|++.+++
T Consensus 185 l~~p~~~~G~~~~---~~~i~~l~~~~~~~li~ 214 (402)
T PRK07505 185 VADGVYSMGGIAP---VKELLRLQEKYGLFLYI 214 (402)
T ss_pred EEecccccCCcCC---HHHHHHHHHHcCCEEEE
Confidence 3466777777766 35666788999875443
No 381
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=23.68 E-value=2.3e+02 Score=29.13 Aligned_cols=77 Identities=23% Similarity=0.313 Sum_probs=47.1
Q ss_pred EeCCCCCchHHHHHHHHHhCCCCEEEEcc---chHH---HHhhhccEEEEcceeEecC---------C--CeecccchHH
Q 006256 485 IVDSRPKHEGKLLLRRLVRKGLSCTYTHI---NAIS---YIIHEVTRVFLGASSVLSN---------G--TVCSRVGTAC 547 (653)
Q Consensus 485 V~ESRP~~EG~~La~eL~~~GI~vT~I~D---sAv~---~iM~~Vd~VllGAdaIlaN---------G--~V~NKiGT~~ 547 (653)
|+-..+..+...+++.|.+.||++.-|+. .+.- .+-++..-+++||-+|+.- | -+++..-+-.
T Consensus 13 Vlr~~~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~FivsP~~~~~ 92 (204)
T TIGR01182 13 VIRIDDVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIVSPGLTPE 92 (204)
T ss_pred EEecCCHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEECCCCCHH
Confidence 33444566778888889999988765543 3322 2223455688888766531 1 1344444556
Q ss_pred HHHHHhhCCCCeee
Q 006256 548 VAMVAYGFHIPVLV 561 (653)
Q Consensus 548 lAl~Ak~~~VPVyV 561 (653)
++-.|+++++|++-
T Consensus 93 v~~~~~~~~i~~iP 106 (204)
T TIGR01182 93 LAKHAQDHGIPIIP 106 (204)
T ss_pred HHHHHHHcCCcEEC
Confidence 67777777777774
No 382
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=23.61 E-value=4.2e+02 Score=28.78 Aligned_cols=103 Identities=16% Similarity=0.122 Sum_probs=62.0
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHH-HhCCCCEEEEccchHHHHhhhccEEEEcceeEe
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRL-VRKGLSCTYTHINAISYIIHEVTRVFLGASSVL 534 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL-~~~GI~vT~I~DsAv~~iM~~Vd~VllGAdaIl 534 (653)
|..+.+--...|...|+++.+.|.+.-|++.+.-+.....++..+. .+.|| .++=-|+++.+-....++..-.....
T Consensus 71 DlAvI~vPa~~v~~al~e~~~~Gvk~~vIisaGf~e~g~~~~~~~~ar~~gi--rviGPNc~Gii~~~~~~~~~~~~~~~ 148 (300)
T PLN00125 71 NASVIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKT--RLIGPNCPGIIKPGECKIGIMPGYIH 148 (300)
T ss_pred CEEEEecCHHHHHHHHHHHHHcCCCEEEEECCCCCcccHHHHHHHHHhhcCC--EEECCCCceeecccccceeecCCCCC
Confidence 5656555666777889999998888888888877765444554443 44554 45555555555442211111111223
Q ss_pred cCC--CeecccchHHHHHH--HhhCCCCee
Q 006256 535 SNG--TVCSRVGTACVAMV--AYGFHIPVL 560 (653)
Q Consensus 535 aNG--~V~NKiGT~~lAl~--Ak~~~VPVy 560 (653)
.-| ++++..|++..+++ +..+++-|-
T Consensus 149 ~~G~ValiSQSG~l~~~l~~~~~~~giG~S 178 (300)
T PLN00125 149 KPGRIGIVSRSGTLTYEAVFQTTAVGLGQS 178 (300)
T ss_pred CCCcEEEEeCCccHHHHHHHHHHHcCCCeE
Confidence 345 47999998777765 556666653
No 383
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=23.60 E-value=52 Score=34.70 Aligned_cols=84 Identities=21% Similarity=0.283 Sum_probs=44.0
Q ss_pred HhccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHH-----HHHHHhCCCCEEEEccchHHHHhhhcc
Q 006256 450 TKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-----LRRLVRKGLSCTYTHINAISYIIHEVT 524 (653)
Q Consensus 450 ~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~L-----a~eL~~~GI~vT~I~DsAv~~iM~~Vd 524 (653)
.++.+|.+||-|++--.|. -+++.+-|- .++-.=..|...|+-+ .+.+.+. +++.+|.|..++.--.-+.
T Consensus 118 ~Lv~eGF~VlPY~~~D~v~--akrL~d~Gc--aavMPlgsPIGSg~Gi~n~~~l~~i~~~-~~vPvIvDAGiG~pSdaa~ 192 (247)
T PF05690_consen 118 ILVKEGFVVLPYCTDDPVL--AKRLEDAGC--AAVMPLGSPIGSGRGIQNPYNLRIIIER-ADVPVIVDAGIGTPSDAAQ 192 (247)
T ss_dssp HHHHTT-EEEEEE-S-HHH--HHHHHHTT---SEBEEBSSSTTT---SSTHHHHHHHHHH-GSSSBEEES---SHHHHHH
T ss_pred HHHHCCCEEeecCCCCHHH--HHHHHHCCC--CEEEecccccccCcCCCCHHHHHHHHHh-cCCcEEEeCCCCCHHHHHH
Confidence 3667999999999987652 344444443 4455556787766544 3444322 2556666777665444344
Q ss_pred EEEEcceeEecCCC
Q 006256 525 RVFLGASSVLSNGT 538 (653)
Q Consensus 525 ~VllGAdaIlaNG~ 538 (653)
..=+|||+|+-|-.
T Consensus 193 AMElG~daVLvNTA 206 (247)
T PF05690_consen 193 AMELGADAVLVNTA 206 (247)
T ss_dssp HHHTT-SEEEESHH
T ss_pred HHHcCCceeehhhH
Confidence 44478888888843
No 384
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=23.58 E-value=3.3e+02 Score=29.62 Aligned_cols=107 Identities=9% Similarity=-0.042 Sum_probs=55.3
Q ss_pred hccCCCEEEEeCChHHHHHHH-HHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc----chHHHHhhhccE
Q 006256 451 KIRDGDVLLTYGSSSAVEMIL-QHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI----NAISYIIHEVTR 525 (653)
Q Consensus 451 ~I~dGdvILT~g~Ss~Ve~vL-~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D----sAv~~iM~~Vd~ 525 (653)
+...+.+||..|.+--|..-| +.+.++| ++|++++-++.. ..... ..++.. +..| ..+..++.++|.
T Consensus 17 ~~~~~~~IlVtGgtGfIG~~l~~~L~~~G--~~V~~v~r~~~~----~~~~~-~~~~~~-~~~Dl~d~~~~~~~~~~~D~ 88 (370)
T PLN02695 17 WPSEKLRICITGAGGFIASHIARRLKAEG--HYIIASDWKKNE----HMSED-MFCHEF-HLVDLRVMENCLKVTKGVDH 88 (370)
T ss_pred CCCCCCEEEEECCccHHHHHHHHHHHhCC--CEEEEEEecccc----ccccc-cccceE-EECCCCCHHHHHHHHhCCCE
Confidence 445678888888754443333 3333444 567766533210 00000 011222 2223 233445668898
Q ss_pred EEEcceeEe------cCCC---eecccchHHHHHHHhhCCCCeeeeccc
Q 006256 526 VFLGASSVL------SNGT---VCSRVGTACVAMVAYGFHIPVLVCCEA 565 (653)
Q Consensus 526 VllGAdaIl------aNG~---V~NKiGT~~lAl~Ak~~~VPVyV~aet 565 (653)
||--|-.+. .+-. -.|-.||..+.-+|+.+++.-+|.+.+
T Consensus 89 Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS 137 (370)
T PLN02695 89 VFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASS 137 (370)
T ss_pred EEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCc
Confidence 876553221 1111 136679999999999999865554433
No 385
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=23.57 E-value=9.8e+02 Score=28.44 Aligned_cols=75 Identities=17% Similarity=0.188 Sum_probs=49.0
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHH-hCCCCEEEEccch--HHHHhhhccEEEE
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLV-RKGLSCTYTHINA--ISYIIHEVTRVFL 528 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~-~~GI~vT~I~DsA--v~~iM~~Vd~Vll 528 (653)
.+...|+|++-+.|...|..-....+-=.+-+.-|-|-.+-..|...+. +..|.|-++...| +|..+.-.+.|+.
T Consensus 491 ~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVF 568 (689)
T KOG1000|consen 491 PPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVF 568 (689)
T ss_pred CCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEE
Confidence 4578999999998877777655544444677888888877777776554 3456666655544 4444444554443
No 386
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=23.53 E-value=5.1e+02 Score=27.79 Aligned_cols=94 Identities=19% Similarity=0.249 Sum_probs=50.3
Q ss_pred ccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc-h---------HHHHhh
Q 006256 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-A---------ISYIIH 521 (653)
Q Consensus 452 I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds-A---------v~~iM~ 521 (653)
+...++|+|.|.+.++..++. +.. + . +|++ ..|.+.... ..+...|+++..+... . ...+..
T Consensus 69 ~~~~~i~it~Ga~~~l~~~~~-~~~-~-~-~v~i--~~P~y~~~~--~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~ 140 (354)
T PRK06358 69 LDLENVILGNGATELIFNIVK-VTK-P-K-KVLI--LAPTFAEYE--RALKAFDAEIEYAELTEETNFAANEIVLEEIKE 140 (354)
T ss_pred CChhhEEECCCHHHHHHHHHH-HhC-C-C-cEEE--ecCChHHHH--HHHHHcCCeeEEEeCccccCCCccHHHHHhhcc
Confidence 455678888888888755444 442 2 2 4554 345554333 3345678877776421 1 111112
Q ss_pred hccEEEEcceeEecCCCeecccchH-------HHHHHHhhCCCCeee
Q 006256 522 EVTRVFLGASSVLSNGTVCSRVGTA-------CVAMVAYGFHIPVLV 561 (653)
Q Consensus 522 ~Vd~VllGAdaIlaNG~V~NKiGT~-------~lAl~Ak~~~VPVyV 561 (653)
+++.|++ .|= -|.+|+. .++-+|+.|++.+++
T Consensus 141 ~~~~v~~------~~P--~NPtG~~~~~~~~~~l~~~a~~~~~~ii~ 179 (354)
T PRK06358 141 EIDLVFL------CNP--NNPTGQLISKEEMKKILDKCEKRNIYLII 179 (354)
T ss_pred CCCEEEE------eCC--CCCCCCccCHHHHHHHHHHHHhcCCEEEE
Confidence 3444433 121 3666644 456678888886554
No 387
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=23.46 E-value=3.4e+02 Score=27.78 Aligned_cols=78 Identities=23% Similarity=0.270 Sum_probs=52.1
Q ss_pred EEeCCCCCchHHHHHHHHHhCCCCEEEEcc---chHHHH---hhhccEEEEcceeEecC---------C--CeecccchH
Q 006256 484 VIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---NAISYI---IHEVTRVFLGASSVLSN---------G--TVCSRVGTA 546 (653)
Q Consensus 484 iV~ESRP~~EG~~La~eL~~~GI~vT~I~D---sAv~~i---M~~Vd~VllGAdaIlaN---------G--~V~NKiGT~ 546 (653)
-|+-..+..+...+++.|.+.||++.-|+. .+.-.+ -++...+++||-+|+.- | -+++..-.-
T Consensus 8 ~Vir~~~~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivSP~~~~ 87 (201)
T PRK06015 8 PVLLIDDVEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVSPGTTQ 87 (201)
T ss_pred EEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEECCCCCH
Confidence 345556677888889999999988765543 333322 22566799999877642 1 245566666
Q ss_pred HHHHHHhhCCCCeee
Q 006256 547 CVAMVAYGFHIPVLV 561 (653)
Q Consensus 547 ~lAl~Ak~~~VPVyV 561 (653)
.+.-.|+++++|++-
T Consensus 88 ~vi~~a~~~~i~~iP 102 (201)
T PRK06015 88 ELLAAANDSDVPLLP 102 (201)
T ss_pred HHHHHHHHcCCCEeC
Confidence 677778888888774
No 388
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=23.43 E-value=5.5e+02 Score=28.25 Aligned_cols=93 Identities=13% Similarity=0.208 Sum_probs=56.9
Q ss_pred HHHHHHhccCCCEEEEeCChHHHHHHHHHHHHc-CCeeEEEEeCCCCC-----chHHHHHHHHHh-CCCCE-----EEEc
Q 006256 445 VKHAVTKIRDGDVLLTYGSSSAVEMILQHAHEL-GKQFRVVIVDSRPK-----HEGKLLLRRLVR-KGLSC-----TYTH 512 (653)
Q Consensus 445 a~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~-gk~f~ViV~ESRP~-----~EG~~La~eL~~-~GI~v-----T~I~ 512 (653)
+++..+.|++|| |+-.+|+++|..++....-. .+.++|+-.=.-.. +.--.+++.|.+ .|-+| -++.
T Consensus 105 A~~l~~~l~~gd-vigV~wGrTv~a~~~~l~~~~~~~~~vV~l~GG~~~~~~~~~~~~~~~~~A~k~~~~~~~l~aP~~~ 183 (321)
T COG2390 105 AQYLESLLKPGD-VIGVGWGRTLSAVVDNLPPAPLRDVKVVQLTGGVGHADGSYNANTIALRLAEKLGAESYLLPAPLVA 183 (321)
T ss_pred HHHHHHhCCCCC-EEEEeccHHHHHHHHhcCcCccCCeEEEECCCCCCCCccccCHHHHHHHHHHHhCCcEEeeecCccC
Confidence 444556778999 88889999998888776543 44567776544333 222233444433 34333 3344
Q ss_pred cc-hHHHHh-------------hhccEEEEcceeEecCCC
Q 006256 513 IN-AISYII-------------HEVTRVFLGASSVLSNGT 538 (653)
Q Consensus 513 Ds-Av~~iM-------------~~Vd~VllGAdaIlaNG~ 538 (653)
++ ...-.| +++|+.|+|.-.+.++..
T Consensus 184 ~s~e~r~~l~~e~~v~~vl~~~~~ad~alvGIG~~~~~~~ 223 (321)
T COG2390 184 SSPELREALLQEPSVREVLDLARSADLALVGIGSLSANST 223 (321)
T ss_pred CCHHHHHHHHhCcHHHHHHHHHHhCCEEEEecCCCcccch
Confidence 44 222222 279999999988887765
No 389
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=23.17 E-value=3.3e+02 Score=25.55 Aligned_cols=55 Identities=15% Similarity=0.317 Sum_probs=26.6
Q ss_pred EEEEeCChHHHHHHHHHHHHc----CCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEE
Q 006256 457 VLLTYGSSSAVEMILQHAHEL----GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT 511 (653)
Q Consensus 457 vILT~g~Ss~Ve~vL~~A~e~----gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I 511 (653)
+|.||..+..+..+|....+. ...++|+|++....-+....++.+....-.++++
T Consensus 2 iIp~~n~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~i~~i 60 (181)
T cd04187 2 VVPVYNEEENLPELYERLKAVLESLGYDYEIIFVDDGSTDRTLEILRELAARDPRVKVI 60 (181)
T ss_pred EEeecCchhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCCccHHHHHHHHHhhCCCEEEE
Confidence 355666655554444433221 3456666666555544455555544333234433
No 390
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=23.13 E-value=1.1e+03 Score=26.40 Aligned_cols=60 Identities=10% Similarity=0.002 Sum_probs=37.7
Q ss_pred HHHHHHHHhCCCCEE-EEccchHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeec
Q 006256 495 KLLLRRLVRKGLSCT-YTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (653)
Q Consensus 495 ~~La~eL~~~GI~vT-~I~DsAv~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~a 563 (653)
.++-+.|.+.||++. +++|..+.- ++.. -|+-.+. ++.+.+.+..-.+-+.||||++.+.
T Consensus 168 ~elk~lL~~~Gi~v~~~lpd~~~~e-~~~~----~~~~~~~----~~~~~~~~~A~~Le~~~GiP~~~~~ 228 (407)
T TIGR01279 168 DQLRLELKQLGIPVVGFLPASHFTE-LPVI----GPGTVVA----PLQPYLSDTATTLRRERGAKVLSAP 228 (407)
T ss_pred HHHHHHHHHcCCeEEEEeCCCCcch-hhhc----CCCeEEE----EechHHHHHHHHHHHHhCCccccCC
Confidence 555677889999998 778865432 1111 1222221 4556666666677788999987754
No 391
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=23.13 E-value=2.1e+02 Score=28.23 Aligned_cols=70 Identities=16% Similarity=0.123 Sum_probs=38.8
Q ss_pred HHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcceeEecCC-CeecccchHHHHHHHhhCCCCeeeecccccc
Q 006256 496 LLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNG-TVCSRVGTACVAMVAYGFHIPVLVCCEAYKF 568 (653)
Q Consensus 496 ~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAdaIlaNG-~V~NKiGT~~lAl~Ak~~~VPVyV~aetyKf 568 (653)
.+++.|.+.|++++++.+.. -+.+.|.||++--.....- ......|....-.-+...++|++-+|--+-+
T Consensus 13 ~~~~~l~~~g~~v~v~~~~~---~l~~~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~~~~~pilGiC~G~q~ 83 (198)
T cd01748 13 SVANALERLGAEVIITSDPE---EILSADKLILPGVGAFGDAMANLRERGLIEALKEAIASGKPFLGICLGMQL 83 (198)
T ss_pred HHHHHHHHCCCeEEEEcChH---HhccCCEEEECCCCcHHHHHHHHHHcChHHHHHHHHHCCCcEEEECHHHHH
Confidence 45678888898888887532 2457888877431110000 0011224433333344569999987765443
No 392
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=23.06 E-value=4.6e+02 Score=25.45 Aligned_cols=74 Identities=15% Similarity=0.190 Sum_probs=42.3
Q ss_pred ccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH-HHHHhCCC-CEEEEccchHHHHhhhccEEEEc
Q 006256 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RRLVRKGL-SCTYTHINAISYIIHEVTRVFLG 529 (653)
Q Consensus 452 I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La-~eL~~~GI-~vT~I~DsAv~~iM~~Vd~VllG 529 (653)
+..+.+||-.|+++-... + .+.+.+...+|+.+|-.|.. ...+ +.+...|+ .++++...+-..+-...|.|+++
T Consensus 29 ~~~~~~vLDiG~G~G~~~-~-~la~~~~~~~v~~vD~s~~~--~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~~~ 104 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVS-I-EAALQFPSLQVTAIERNPDA--LRLIKENRQRFGCGNIDIIPGEAPIELPGKADAIFIG 104 (187)
T ss_pred CCCCCEEEEECCcCCHHH-H-HHHHHCCCCEEEEEECCHHH--HHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEEEC
Confidence 357889999999874422 1 12223456789999987642 3344 33344454 46776644322222346777664
No 393
>PRK07671 cystathionine beta-lyase; Provisional
Probab=23.04 E-value=1e+03 Score=26.12 Aligned_cols=90 Identities=16% Similarity=0.263 Sum_probs=46.8
Q ss_pred EEeCChH-HHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHH-HHHHhCCCCEEEEccchHHHHhh----hccEEEEcce
Q 006256 459 LTYGSSS-AVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHINAISYIIH----EVTRVFLGAS 531 (653)
Q Consensus 459 LT~g~Ss-~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La-~eL~~~GI~vT~I~DsAv~~iM~----~Vd~VllGAd 531 (653)
+.++++. ++.. +..+.+.| -+|+|.+ |.+.|. .+. ..+...|+.++++...-...+.. +..+|++-
T Consensus 69 ~~~~sG~aai~~-~~~~l~~G--d~Viv~~--~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~ai~~~tklV~le-- 141 (377)
T PRK07671 69 FAFGSGMAAITA-VMMLFSSG--DHVILTD--DVYGGTYRVMTKVLNRFGIEHTFVDTSNLEEVEEAIRPNTKAIYVE-- 141 (377)
T ss_pred EEeCCHHHHHHH-HHHHhCCC--CEEEECC--CccchHHHHHHHHHhcCCeEEEEECCCCHHHHHHhcCCCCeEEEEE--
Confidence 3355544 4433 33343334 3566644 556543 333 45677899988886332333332 34444441
Q ss_pred eEecCCCeecccch----HHHHHHHhhCCCCeee
Q 006256 532 SVLSNGTVCSRVGT----ACVAMVAYGFHIPVLV 561 (653)
Q Consensus 532 aIlaNG~V~NKiGT----~~lAl~Ak~~~VPVyV 561 (653)
...|..|. -.|+-+|++++++++|
T Consensus 142 ------~P~NPtg~~~dl~~I~~la~~~g~~lvv 169 (377)
T PRK07671 142 ------TPTNPLLKITDIKKISTIAKEKGLLTIV 169 (377)
T ss_pred ------CCCCCCCcccCHHHHHHHHHHcCCEEEE
Confidence 11233333 3577788999987665
No 394
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=23.04 E-value=9.9e+02 Score=26.23 Aligned_cols=43 Identities=21% Similarity=0.230 Sum_probs=30.2
Q ss_pred CCCEEEEccchHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeec
Q 006256 505 GLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (653)
Q Consensus 505 GI~vT~I~DsAv~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~a 563 (653)
+..+..+.+.+ ..+|..+|.+++=+ ||..+ =|-.+|+|++++.
T Consensus 251 ~~~v~~~~~~~-~~~l~aADl~V~~S-------------Gt~tl--Ea~a~G~P~Vv~y 293 (385)
T TIGR00215 251 DLQLHLIDGDA-RKAMFAADAALLAS-------------GTAAL--EAALIKTPMVVGY 293 (385)
T ss_pred CCcEEEECchH-HHHHHhCCEEeecC-------------CHHHH--HHHHcCCCEEEEE
Confidence 45666665544 46888899887654 66554 5667899999984
No 395
>PRK09191 two-component response regulator; Provisional
Probab=23.02 E-value=6.9e+02 Score=24.88 Aligned_cols=92 Identities=20% Similarity=0.243 Sum_probs=50.1
Q ss_pred HHHHHHHHHHH---cCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc---hHHHHhh-hccEEEEcceeEecCCC
Q 006256 466 AVEMILQHAHE---LGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLGASSVLSNGT 538 (653)
Q Consensus 466 ~Ve~vL~~A~e---~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds---Av~~iM~-~Vd~VllGAdaIlaNG~ 538 (653)
+|..-+..|.+ .....+|++++..+... ..+...|...|+.+..+.++ +...+.. ..|.||+..+ +.+|
T Consensus 120 tV~~~l~ra~~~l~~~~~~~~liidd~~~~~-~~l~~~L~~~~~~~~~~~~~~~~~l~~l~~~~~dlvi~d~~--~~~~- 195 (261)
T PRK09191 120 EAEALLDDARAEIARQVATRVLIIEDEPIIA-MDLEQLVESLGHRVTGIARTRAEAVALAKKTRPGLILADIQ--LADG- 195 (261)
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEcCcHHHH-HHHHHHHhcCCCEEEEEECCHHHHHHHHhccCCCEEEEecC--CCCC-
Confidence 44454555543 23345778887665442 23446677788887744433 2222222 4788988764 2221
Q ss_pred eecccchHHHHHHHhhCCCCeeeecc
Q 006256 539 VCSRVGTACVAMVAYGFHIPVLVCCE 564 (653)
Q Consensus 539 V~NKiGT~~lAl~Ak~~~VPVyV~ae 564 (653)
.-|.-.+..+.+..++|+++++.
T Consensus 196 ---~~g~e~l~~l~~~~~~pii~ls~ 218 (261)
T PRK09191 196 ---SSGIDAVNDILKTFDVPVIFITA 218 (261)
T ss_pred ---CCHHHHHHHHHHhCCCCEEEEeC
Confidence 11333344444444899999876
No 396
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=22.95 E-value=9.4e+02 Score=25.91 Aligned_cols=30 Identities=10% Similarity=0.218 Sum_probs=17.1
Q ss_pred eEecC-CCeecccc-hHHHHHHHhhCCCCeee
Q 006256 532 SVLSN-GTVCSRVG-TACVAMVAYGFHIPVLV 561 (653)
Q Consensus 532 aIlaN-G~V~NKiG-T~~lAl~Ak~~~VPVyV 561 (653)
-+..+ |.++..-+ -..++-+|++|++.+++
T Consensus 199 p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~ 230 (413)
T cd00610 199 PIQGEGGVIVPPPGYLKALRELCRKHGILLIA 230 (413)
T ss_pred cccCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 35544 33333333 45566678888887654
No 397
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=22.91 E-value=94 Score=30.84 Aligned_cols=44 Identities=25% Similarity=0.326 Sum_probs=26.7
Q ss_pred HHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCC-EEEEccch
Q 006256 467 VEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLS-CTYTHINA 515 (653)
Q Consensus 467 Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~-vT~I~DsA 515 (653)
...+|+.+++ +.+.|+++=+||...-..+++.| |++ +-+|+.|.
T Consensus 21 ~~~~l~~l~~--~gi~~~i~TgR~~~~~~~~~~~l---~~~~~~~I~~NG 65 (221)
T TIGR02463 21 AAPWLTRLQE--AGIPVILCTSKTAAEVEYLQKAL---GLTGDPYIAENG 65 (221)
T ss_pred HHHHHHHHHH--CCCeEEEEcCCCHHHHHHHHHHc---CCCCCcEEEeCC
Confidence 3466777765 34678888888887655555444 333 44555544
No 398
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=22.73 E-value=8.7e+02 Score=25.18 Aligned_cols=109 Identities=13% Similarity=0.066 Sum_probs=63.8
Q ss_pred HHHHHHHhccCCCEEEEeCChHHHHHHHHHHHHcCCe-eEEE---EeCCCCC----c-----hHH----HHHHHHHhC--
Q 006256 444 IVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQ-FRVV---IVDSRPK----H-----EGK----LLLRRLVRK-- 504 (653)
Q Consensus 444 Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~-f~Vi---V~ESRP~----~-----EG~----~La~eL~~~-- 504 (653)
++..+.++|. +..|+..|.+.+=..++..+...|.. +.++ ++|-.-+ + -|+ .++++|.+.
T Consensus 22 ~g~~~Q~~L~-~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp 100 (245)
T PRK05690 22 FDFDGQEKLK-AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINP 100 (245)
T ss_pred cCHHHHHHhc-CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCC
Confidence 5666677775 47888888876544555555556754 4443 2221111 0 121 123556544
Q ss_pred CCCEEEEc----cchHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeee
Q 006256 505 GLSCTYTH----INAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (653)
Q Consensus 505 GI~vT~I~----DsAv~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~ 562 (653)
.+.++.+. ...+..+++++|.||...|... --+.+.-+|+.+++|++..
T Consensus 101 ~v~i~~~~~~i~~~~~~~~~~~~DiVi~~~D~~~---------~r~~ln~~~~~~~ip~v~~ 153 (245)
T PRK05690 101 HIAIETINARLDDDELAALIAGHDLVLDCTDNVA---------TRNQLNRACFAAKKPLVSG 153 (245)
T ss_pred CCEEEEEeccCCHHHHHHHHhcCCEEEecCCCHH---------HHHHHHHHHHHhCCEEEEe
Confidence 45554443 2234456788999998887431 2356777899999998864
No 399
>PF02550 AcetylCoA_hydro: Acetyl-CoA hydrolase/transferase N-terminal domain; InterPro: IPR003702 This family contains several enzymes which take part in pathways involving acetyl-CoA. Acetyl-CoA hydrolase 3.1.2.1 from EC from yeast catalyses the formation of acetate from acetyl-CoA, CoA transferase (CAT1) 2.8.3 from EC produces succinyl-CoA, and acetate-CoA transferase 2.8.3.8 from EC utilises acyl-CoA and acetate to form acetyl-CoA.; GO: 0003824 catalytic activity, 0006084 acetyl-CoA metabolic process; PDB: 2NVV_C 2G39_A 3D3U_A 3S8D_B 3QLI_B 3QLK_B 3GK7_B 3QDQ_A 3EH7_A 2OAS_A ....
Probab=22.70 E-value=3.8e+02 Score=26.78 Aligned_cols=109 Identities=17% Similarity=0.202 Sum_probs=61.1
Q ss_pred HHHHHHhccCCCEEEEeC--Ch---HHH-HHHHHHHHHcC-----CeeEEEEeC---CC-----------------CCch
Q 006256 445 VKHAVTKIRDGDVLLTYG--SS---SAV-EMILQHAHELG-----KQFRVVIVD---SR-----------------PKHE 493 (653)
Q Consensus 445 a~~a~~~I~dGdvILT~g--~S---s~V-e~vL~~A~e~g-----k~f~ViV~E---SR-----------------P~~E 493 (653)
++.|+++|++|+.|.+-+ .. .++ ..+.+++.+.. ..+.++... .. +++-
T Consensus 12 a~eA~~~Ik~g~~I~~~~~~~~~~p~~l~~aL~~r~~e~~~~~~~~~~~l~~~~~l~~~P~~~~~~~~~~~~~~~~s~f~ 91 (198)
T PF02550_consen 12 AEEAASLIKSGDWIAFGGFTFAGEPKALPEALAQRAEELENVKVYSFISLFHGASLSADPEDPYLAPESAFHFRHNSFFV 91 (198)
T ss_dssp HHHHHTTS-TT-EEEE-SCTGGGS-HHHHHHHHHHHHGHCSEECTCSEEEEEECSSBTTHHHCCHSGCCTCCEEEEESS-
T ss_pred HHHHHHhCCCCCEEEeCCcccccCHHHHHHHHHHHHHHHhccccceeeccccceeecccccccccchhhhhhcccCcccC
Confidence 457889999999999887 32 223 33333443321 235665544 12 2223
Q ss_pred HHHHHHHHHhCC-CCEEEEccchHHHHhh----hccEEEEcceeEecCCCeecccchHHHHHHHhh
Q 006256 494 GKLLLRRLVRKG-LSCTYTHINAISYIIH----EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG 554 (653)
Q Consensus 494 G~~La~eL~~~G-I~vT~I~DsAv~~iM~----~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~ 554 (653)
|. ..+.+.+.| +..+-+..+.+...+. .+|.+++-+.-+-.+|.+.--+|..-.-.+++.
T Consensus 92 ~~-~~R~~~~~G~~~y~p~~ls~~p~~~~~~~~~~Dvaii~vSp~De~Gy~slG~s~~~~~~~ie~ 156 (198)
T PF02550_consen 92 GP-NERKAINQGRVDYVPIHLSEIPRLFRRGFIPIDVAIIQVSPMDEHGYFSLGTSVDYTKAAIEQ 156 (198)
T ss_dssp -H-HHHHHHHTTSSEES--BGGGHHHHHHTTSSH-SEEEEEECEE-TTSEEECTTBHBTHHHHHHH
T ss_pred CH-HHHHHHHCCCeEEECccHHHhHHHHHcCCCCCCEEEEEecCcCCCCCEeecHHHHhHHHHHhc
Confidence 32 346677777 3444456788887776 389999999999999987766664333333444
No 400
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=22.66 E-value=1.8e+02 Score=30.67 Aligned_cols=42 Identities=14% Similarity=0.188 Sum_probs=21.6
Q ss_pred hHHHHHHHHHhCCCCEEEEccch-HHHH---hhhccEEEEcceeEe
Q 006256 493 EGKLLLRRLVRKGLSCTYTHINA-ISYI---IHEVTRVFLGASSVL 534 (653)
Q Consensus 493 EG~~La~eL~~~GI~vT~I~DsA-v~~i---M~~Vd~VllGAdaIl 534 (653)
.|..+++.|.+.|+++.+|.... .... +.+.|+||.-++..+
T Consensus 20 s~~~i~~al~~~g~~~~~i~~~~~~~~~~~~~~~~D~v~~~~~g~~ 65 (299)
T PRK14571 20 SGERVKKALEKLGYEVTVFDVDEDFLKKVDQLKSFDVVFNVLHGTF 65 (299)
T ss_pred HHHHHHHHHHHcCCeEEEEccCchHHHHhhhccCCCEEEEeCCCCC
Confidence 45555566666666665553221 1111 235677777766543
No 401
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=22.66 E-value=9.8e+02 Score=25.73 Aligned_cols=54 Identities=19% Similarity=0.081 Sum_probs=34.9
Q ss_pred HHHHHHHHhCCCCEEEEccchHHHHhhhccEEEE---cceeEecCCCeecccchHHHHH
Q 006256 495 KLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFL---GASSVLSNGTVCSRVGTACVAM 550 (653)
Q Consensus 495 ~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~Vll---GAdaIlaNG~V~NKiGT~~lAl 550 (653)
...++.+.+.|.++..|+.+.-+.+-+.+|.+|. |.+.+. |...-+.||.+..+
T Consensus 148 i~al~~Ak~~Ga~tI~IT~~~~s~La~~aD~~I~~~~g~E~~~--~st~~~s~taqk~i 204 (299)
T PRK05441 148 IGALEYARERGALTIGISCNPGSPLSKEADIAIEVVVGPEVLT--GSTRMKAGTAQKLV 204 (299)
T ss_pred HHHHHHHHHCCCeEEEEECCCCChhhHhCCEEEEcCCCCcccc--ccccccchhHHHHH
Confidence 3445777788999888887665566666787764 566555 34445566655444
No 402
>PRK09148 aminotransferase; Validated
Probab=22.65 E-value=3.9e+02 Score=29.38 Aligned_cols=97 Identities=15% Similarity=0.084 Sum_probs=53.5
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc-------hHHHHhh----hcc
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-------AISYIIH----EVT 524 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds-------Av~~iM~----~Vd 524 (653)
.+++|.|.+..+..++....+.|. +|++ + .|.+.+..... ...|+.+..+... .+-..+. +..
T Consensus 94 ~I~it~G~~~al~~~~~~l~~~gd--~Vl~-~-~P~y~~~~~~~--~~~g~~v~~v~~~~~~~~~~~l~~~~~~~~~~~~ 167 (405)
T PRK09148 94 QVVATLGSKEGFANMAQAITAPGD--VILC-P-NPSYPIHAFGF--IMAGGVIRSVPAEPDEEFFPALERAVRHSIPKPI 167 (405)
T ss_pred cEEEcCChHHHHHHHHHHhcCCCC--EEEE-c-CCCCcccHHHH--HhcCCEEEEEeCCCCCCCccCHHHHHhhccccce
Confidence 689999999888666555544443 4444 3 47776654433 3468888776421 1222232 333
Q ss_pred EEEEc-ceeEecCCCeecccchHHHHHHHhhCCCCee
Q 006256 525 RVFLG-ASSVLSNGTVCSRVGTACVAMVAYGFHIPVL 560 (653)
Q Consensus 525 ~VllG-AdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVy 560 (653)
.|++- .+ -..|.+++.-=-..++-+|+.|++.++
T Consensus 168 ~v~l~~P~--NPtG~~~s~~~l~~l~~~a~~~~~~ii 202 (405)
T PRK09148 168 ALIVNYPS--NPTAYVADLDFYKDVVAFAKKHDIIIL 202 (405)
T ss_pred EEEEeCCC--CCCCcCCCHHHHHHHHHHHHHcCeEEE
Confidence 34331 11 123555554434566677888887444
No 403
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=22.61 E-value=1.6e+02 Score=33.36 Aligned_cols=71 Identities=17% Similarity=0.201 Sum_probs=39.8
Q ss_pred CCCEEEEe--CChHHHHHHHHHHHHc-----C-------CeeEEEEeCCC-----CCchHHHHHHHHHhCCCCEEEEc-c
Q 006256 454 DGDVLLTY--GSSSAVEMILQHAHEL-----G-------KQFRVVIVDSR-----PKHEGKLLLRRLVRKGLSCTYTH-I 513 (653)
Q Consensus 454 dGdvILT~--g~Ss~Ve~vL~~A~e~-----g-------k~f~ViV~ESR-----P~~EG~~La~eL~~~GI~vT~I~-D 513 (653)
+|..+..| |+|.-|+++|..+.+. | ..+.|+|+--. -.....+++..|.+.||.|.+-. +
T Consensus 305 ~g~~~~i~~~~~GiGieRli~~l~e~~~d~~g~~~P~~iaP~qV~Iipi~~~~~~~~~~a~~i~~~L~~~Gi~v~~D~~~ 384 (439)
T PRK12325 305 DGKEVPVHMGSYGIGVSRLVAAIIEASHDDKGIIWPESVAPFKVGIINLKQGDEACDAACEKLYAALSAAGIDVLYDDTD 384 (439)
T ss_pred CCCEEeEEEeeeECCHHHHHHHHHHHhCccCCCcCCCCcCCeEEEEEecCCCCHHHHHHHHHHHHHHHHCCCEEEEECCC
Confidence 45443333 5554455555555443 4 24677766331 11234566788999999887743 3
Q ss_pred chHHHHhhhcc
Q 006256 514 NAISYIIHEVT 524 (653)
Q Consensus 514 sAv~~iM~~Vd 524 (653)
..++.-|+.++
T Consensus 385 ~~lg~ki~~a~ 395 (439)
T PRK12325 385 ERPGAKFATMD 395 (439)
T ss_pred CCHhHHHHHHH
Confidence 45677666543
No 404
>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=22.60 E-value=5.4e+02 Score=28.81 Aligned_cols=111 Identities=18% Similarity=0.112 Sum_probs=66.2
Q ss_pred CCEEEEeC-ChHHHHHHHHHHHHcCCeeEEEEeCCCCCch--HHHHHHHHHhCCCCEEEEc-c----chHHHHhhhccEE
Q 006256 455 GDVLLTYG-SSSAVEMILQHAHELGKQFRVVIVDSRPKHE--GKLLLRRLVRKGLSCTYTH-I----NAISYIIHEVTRV 526 (653)
Q Consensus 455 GdvILT~g-~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~E--G~~La~eL~~~GI~vT~I~-D----sAv~~iM~~Vd~V 526 (653)
+.++|..| .+-+-+.+++...+++...+++++|-.|... ..+.... ..-.++++. | +.+......+..|
T Consensus 4 ~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~---~~~~v~~~~~D~~~~~~i~~a~~~~~Vv 80 (361)
T KOG1430|consen 4 KLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGF---RSGRVTVILGDLLDANSISNAFQGAVVV 80 (361)
T ss_pred CCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhcc---cCCceeEEecchhhhhhhhhhccCceEE
Confidence 34555555 5667777778887777789999999988631 1111111 233455552 2 2333333345233
Q ss_pred EEcc---eeEecCC----CeecccchHHHHHHHhhCCCCeeeecccccc
Q 006256 527 FLGA---SSVLSNG----TVCSRVGTACVAMVAYGFHIPVLVCCEAYKF 568 (653)
Q Consensus 527 llGA---daIlaNG----~V~NKiGT~~lAl~Ak~~~VPVyV~aetyKf 568 (653)
..-| +.+..|. .-+|--||..+=-+|+..||+++|-..+.-.
T Consensus 81 h~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~~lIYtSs~~V 129 (361)
T KOG1430|consen 81 HCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVKRLIYTSSAYV 129 (361)
T ss_pred EeccccCccccccchhhheeecchhHHHHHHHHHHhCCCEEEEecCceE
Confidence 3322 2222221 2368899999999999999999997766533
No 405
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=22.36 E-value=7.5e+02 Score=27.27 Aligned_cols=97 Identities=15% Similarity=0.180 Sum_probs=46.5
Q ss_pred EEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHH-HHHHhCCCCEEEEccchHHHHhh----hccEEEEcce
Q 006256 458 LLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHINAISYIIH----EVTRVFLGAS 531 (653)
Q Consensus 458 ILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La-~eL~~~GI~vT~I~DsAv~~iM~----~Vd~VllGAd 531 (653)
|++-+...++..+|....+.|. +|++ +.|.+.+. .+. ..+...|+.++++....+..+.+ +..+|++--
T Consensus 80 i~~~sG~~Ai~~~l~all~~Gd--~Vl~--~~~~y~~t~~~~~~~~~~~gi~~~~~d~~d~e~l~~~i~~~tklV~ie~- 154 (388)
T PRK07811 80 RAFSSGMAATDCLLRAVLRPGD--HIVI--PNDAYGGTFRLIDKVFTRWGVEYTPVDLSDLDAVRAAITPRTKLIWVET- 154 (388)
T ss_pred EEeCCHHHHHHHHHHHHhCCCC--EEEE--cCCCchHHHHHHHHhCcCCCeEEEEeCCCCHHHHHHhcCcCCeEEEEEC-
Confidence 3333334455555544443333 5555 34666543 333 33445688877764322333322 333443320
Q ss_pred eEecCCCeecccchHHHHHHHhhCCCCeeee
Q 006256 532 SVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (653)
Q Consensus 532 aIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~ 562 (653)
---..|.+ .--..++-+|+.|+++++|=
T Consensus 155 p~NPtg~~---~dl~~I~~la~~~gi~lIvD 182 (388)
T PRK07811 155 PTNPLLSI---TDIAALAELAHDAGAKVVVD 182 (388)
T ss_pred CCCCccee---cCHHHHHHHHHHcCCEEEEE
Confidence 00011222 23345677889999877764
No 406
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=22.30 E-value=1.1e+03 Score=26.01 Aligned_cols=91 Identities=12% Similarity=0.137 Sum_probs=44.8
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc---hHHHHhhh--ccEEEE
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---AISYIIHE--VTRVFL 528 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds---Av~~iM~~--Vd~Vll 528 (653)
.|..|..++....+..+++.+.+.|-....+++.......-.++ +.+ .+-...++.|. .....+.+ .|++|
T Consensus 285 ~gkrv~I~~~~~~~~~~~~~l~elG~~v~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~pdl~i- 360 (406)
T cd01967 285 KGKKVIIYTGGARSWHVIAALRELGMEVVAAGYEFGHDDDYERI-RKI--LDEGTLLVDDYNDLELEELVEKLKPDLIL- 360 (406)
T ss_pred cCCEEEEEccCcchHHHHHHHHHcCCEEEEEEEecCCHHHHHHH-Hhc--CCCCcEEEeCCCHHHHHHHHHhcCCCEEE-
Confidence 47777777554433344455566786654444443322111111 111 12233444332 44444553 45543
Q ss_pred cceeEecCCCeecccchHHHHHHHhhCCCCeeeec
Q 006256 529 GASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (653)
Q Consensus 529 GAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~a 563 (653)
|+......|+..++|++...
T Consensus 361 ---------------g~~~~~~~a~~~gip~~~~~ 380 (406)
T cd01967 361 ---------------SGIKEKYVAQKLGIPFLDLH 380 (406)
T ss_pred ---------------eCCcchHHHHhcCCCEEecC
Confidence 22223466788899997654
No 407
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=22.22 E-value=5e+02 Score=29.02 Aligned_cols=90 Identities=14% Similarity=0.151 Sum_probs=52.9
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcceeEec
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLS 535 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAdaIla 535 (653)
..|+.+|-+..=...++.+...+-.+.|.+.|.++.. .....|.+ ||.+.+-... ... +.++|.||+..- |-.
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~---~~~~~l~~-g~~~~~g~~~-~~~-~~~~d~vV~Spg-I~~ 80 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETP---PGQEQLPE-DVELHSGGWN-LEW-LLEADLVVTNPG-IAL 80 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCc---hhHHHhhc-CCEEEeCCCC-hHH-hccCCEEEECCC-CCC
Confidence 4578887764433445555544444899999988754 22345644 8777654212 222 367888866542 111
Q ss_pred CCCeecccchHHHHHHHhhCCCCeee
Q 006256 536 NGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 536 NG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
+...-..|++.+||++-
T Consensus 81 ---------~~p~~~~a~~~gi~i~~ 97 (438)
T PRK04663 81 ---------ATPEIQQVLAAGIPVVG 97 (438)
T ss_pred ---------CCHHHHHHHHCCCcEEE
Confidence 23566677788888873
No 408
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=22.21 E-value=3e+02 Score=30.09 Aligned_cols=101 Identities=18% Similarity=0.171 Sum_probs=53.6
Q ss_pred ccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCC-----------CEEEEccchH-HHH
Q 006256 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGL-----------SCTYTHINAI-SYI 519 (653)
Q Consensus 452 I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI-----------~vT~I~DsAv-~~i 519 (653)
+...++++|.|...++.. |..+...|. .|+| ..|.+.+...+.+ ..|+ .++.+....- .+.
T Consensus 93 ~~~d~I~it~Ga~~al~~-l~~l~~~gd--~Vlv--~~P~y~~~~~~~~--~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ 165 (402)
T TIGR03542 93 IDPEEIFISDGAKCDVFR-LQSLFGSDN--TVAV--QDPVYPAYVDSNV--MAGRAGVLDDDGRYSKITYLPCTKENNFI 165 (402)
T ss_pred CCHHHEEECCCcHHHHHH-HHHhcCCCC--EEEE--eCCCCcchHHHHH--HcCCccccccccccceEEEeecchhhCCC
Confidence 555678899998888854 445544343 3444 4566665544433 3455 7776653211 111
Q ss_pred h-----hhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCee
Q 006256 520 I-----HEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVL 560 (653)
Q Consensus 520 M-----~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVy 560 (653)
. .++++|+|- .-=-.-|.++++-=-..++-+|++|++.++
T Consensus 166 ~~~~~~~~~~~i~l~-nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI 210 (402)
T TIGR03542 166 PDLPEEPKIDIIYLC-SPNNPTGTVLTKEQLKELVDYANEHGSLIL 210 (402)
T ss_pred CCccccCCceEEEEe-CCCCCCCccCCHHHHHHHHHHHHHcCeEEE
Confidence 1 234445442 111122444444334567778888988654
No 409
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=22.09 E-value=2.3e+02 Score=30.69 Aligned_cols=32 Identities=9% Similarity=0.219 Sum_probs=23.8
Q ss_pred cceeEecCCCeecccchHHHHHHHhhCCCCeeeecccc
Q 006256 529 GASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (653)
Q Consensus 529 GAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~aety 566 (653)
+.|.|..|. .++..+++|+.+|||++..++.+
T Consensus 92 ~pDlVi~d~------~~~~~~~~A~~~giP~v~~~~~~ 123 (392)
T TIGR01426 92 RPDLIVYDI------ASWTGRLLARKWDVPVISSFPTF 123 (392)
T ss_pred CCCEEEECC------ccHHHHHHHHHhCCCEEEEehhh
Confidence 677777765 24456788999999999887654
No 410
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=22.08 E-value=1.6e+02 Score=32.82 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=23.1
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCC
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSR 489 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESR 489 (653)
..||..|.+..-..+++.|.+.|- +|+++++.
T Consensus 3 ~~ililg~g~~~~~~~~~a~~lG~--~~v~~~~~ 34 (450)
T PRK06111 3 QKVLIANRGEIAVRIIRTCQKLGI--RTVAIYSE 34 (450)
T ss_pred ceEEEECCcHHHHHHHHHHHHcCC--eEEEEech
Confidence 368999999876688888988765 45555443
No 411
>PRK12743 oxidoreductase; Provisional
Probab=22.06 E-value=3.6e+02 Score=27.11 Aligned_cols=74 Identities=12% Similarity=0.075 Sum_probs=45.8
Q ss_pred CCEEEEeCChHHHHHHH-HHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEE-cc----chHHHHhh-------
Q 006256 455 GDVLLTYGSSSAVEMIL-QHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT-HI----NAISYIIH------- 521 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL-~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I-~D----sAv~~iM~------- 521 (653)
+.+||..|.|+-|...+ +.+.++| .+|+++..|+.....++..+|...|-.+.++ +| ..+-.++.
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 79 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQG--FDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRLG 79 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC--CEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 35778888777664433 3444444 5788887777766777778888777666654 22 22333333
Q ss_pred hccEEEEcc
Q 006256 522 EVTRVFLGA 530 (653)
Q Consensus 522 ~Vd~VllGA 530 (653)
.+|.||..|
T Consensus 80 ~id~li~~a 88 (256)
T PRK12743 80 RIDVLVNNA 88 (256)
T ss_pred CCCEEEECC
Confidence 467777655
No 412
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=22.05 E-value=6e+02 Score=24.72 Aligned_cols=75 Identities=19% Similarity=0.198 Sum_probs=41.5
Q ss_pred CCEEEEeCChHHHH-HHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc-c----chHHHHhh-------
Q 006256 455 GDVLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-I----NAISYIIH------- 521 (653)
Q Consensus 455 GdvILT~g~Ss~Ve-~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~-D----sAv~~iM~------- 521 (653)
+.+||..|-+..+. .+.+.+.++| .+|+++-.++...-..+..++...+-.+.++. | ..+..++.
T Consensus 5 ~~~vlItG~sg~iG~~l~~~l~~~G--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (248)
T PRK05557 5 GKVALVTGASRGIGRAIAERLAAQG--ANVVINYASSEAGAEALVAEIGALGGKALAVQGDVSDAESVERAVDEAKAEFG 82 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC--CEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 45777777766553 3344455544 46766665554434455566666666655542 2 22222332
Q ss_pred hccEEEEcce
Q 006256 522 EVTRVFLGAS 531 (653)
Q Consensus 522 ~Vd~VllGAd 531 (653)
.+|.||..|-
T Consensus 83 ~id~vi~~ag 92 (248)
T PRK05557 83 GVDILVNNAG 92 (248)
T ss_pred CCCEEEECCC
Confidence 4688877764
No 413
>PRK05942 aspartate aminotransferase; Provisional
Probab=21.99 E-value=4.9e+02 Score=28.30 Aligned_cols=91 Identities=13% Similarity=0.126 Sum_probs=49.9
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc-cch------HHHHh----hhcc
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-INA------ISYII----HEVT 524 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~-DsA------v~~iM----~~Vd 524 (653)
.+|+|.|.+..+..++....+.|. +|+|. .|.+.+...+ +...|+.+..+. |.. +..+. +++.
T Consensus 99 ~i~vt~G~~~al~~~~~~~~~~gd--~Vlv~--~P~y~~~~~~--~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k 172 (394)
T PRK05942 99 EALPLLGSKEGLTHLALAYVNPGD--VVLVP--SPAYPAHFRG--PLIAGAQIYPIILKPENDWLIDLSSIPEEVAQQAK 172 (394)
T ss_pred eEEEccChHHHHHHHHHHhCCCCC--EEEEc--CCCCcchHHH--HHHcCCEEEEeecCCccCCccCHHHHHHhccccce
Confidence 467788888888666555544443 45543 4777664433 234688776663 211 11221 2344
Q ss_pred EEEEcceeEecCCCeecccchH-------HHHHHHhhCCCCee
Q 006256 525 RVFLGASSVLSNGTVCSRVGTA-------CVAMVAYGFHIPVL 560 (653)
Q Consensus 525 ~VllGAdaIlaNG~V~NKiGT~-------~lAl~Ak~~~VPVy 560 (653)
.|++ + ..-|..|+. .++-+|+.|++.++
T Consensus 173 ~i~l-------~-~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI 207 (394)
T PRK05942 173 ILYF-------N-YPSNPTTATAPREFFEEIVAFARKYEIMLV 207 (394)
T ss_pred EEEE-------c-CCCCCCCCcCCHHHHHHHHHHHHHcCeEEE
Confidence 4443 3 234555554 46667889988554
No 414
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=21.98 E-value=3.5e+02 Score=26.98 Aligned_cols=83 Identities=18% Similarity=0.159 Sum_probs=42.8
Q ss_pred EEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcceeEecCCCeeccc-chHHHHHHHhhCCCCee
Q 006256 482 RVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRV-GTACVAMVAYGFHIPVL 560 (653)
Q Consensus 482 ~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAdaIlaNG~V~NKi-GT~~lAl~Ak~~~VPVy 560 (653)
+|.|++--=.+- ..+++.|.+.|+.+.++.+. .-+.++|.++++--... +.....+ +.....--+...++|++
T Consensus 2 ~~~v~~~~~~~~-~~~~~~l~~~G~~~~~~~~~---~~~~~~d~iii~G~~~~--~~~~~~~~~~~~~i~~~~~~~~Pil 75 (200)
T PRK13143 2 MIVIIDYGVGNL-RSVSKALERAGAEVVITSDP---EEILDADGIVLPGVGAF--GAAMENLSPLRDVILEAARSGKPFL 75 (200)
T ss_pred eEEEEECCCccH-HHHHHHHHHCCCeEEEECCH---HHHccCCEEEECCCCCH--HHHHHHHHHHHHHHHHHHHcCCCEE
Confidence 344444332222 45567788888887777542 23457888877541100 0111111 11122223445689999
Q ss_pred eecccccccc
Q 006256 561 VCCEAYKFHE 570 (653)
Q Consensus 561 V~aetyKf~~ 570 (653)
-+|--+-+--
T Consensus 76 gIC~G~q~l~ 85 (200)
T PRK13143 76 GICLGMQLLF 85 (200)
T ss_pred EECHHHHHHh
Confidence 8887665543
No 415
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=21.92 E-value=7.5e+02 Score=26.60 Aligned_cols=96 Identities=18% Similarity=0.095 Sum_probs=50.7
Q ss_pred CCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc-h------HHHHhhhccEEE
Q 006256 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-A------ISYIIHEVTRVF 527 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds-A------v~~iM~~Vd~Vl 527 (653)
+.+|+|.|.+..+..++....+.| -.|+|.+ |.+.+...+ +...|+++..+... . +..+...++
T Consensus 92 ~~vi~t~G~~~~l~~~~~~~~~~g--d~vlv~~--P~y~~~~~~--~~~~G~~v~~v~~~~~~g~~~d~~~l~~~~~--- 162 (383)
T TIGR03540 92 TEVLSLIGSKEGIAHIPLAFVNPG--DIVLVPD--PGYPVYRIG--TLFAGGEPYEMPLKEENGFLPDFDAIPEDIA--- 162 (383)
T ss_pred CeEEECCCcHHHHHHHHHHhCCCC--CEEEEeC--CCCcchHHH--HHhcCCEEEEEecCcccCCccCHHHHHhhcc---
Confidence 357788888888866655444333 3455543 666665544 34577777766421 1 112211111
Q ss_pred EcceeEecCCCeecccch-------HHHHHHHhhCCCCee
Q 006256 528 LGASSVLSNGTVCSRVGT-------ACVAMVAYGFHIPVL 560 (653)
Q Consensus 528 lGAdaIlaNG~V~NKiGT-------~~lAl~Ak~~~VPVy 560 (653)
-+...|+-+ ..-|..|+ ..++-+|+.|++.++
T Consensus 163 ~~~~~v~i~-~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii 201 (383)
T TIGR03540 163 KKAKLMFIN-YPNNPTGAVAPLKFFKELVEFAKEYNIIVC 201 (383)
T ss_pred ccceEEEEe-CCCCCcCccCCHHHHHHHHHHHHHcCEEEE
Confidence 122333333 23467774 455667888887444
No 416
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=21.91 E-value=2.8e+02 Score=25.72 Aligned_cols=48 Identities=13% Similarity=0.312 Sum_probs=26.7
Q ss_pred EEEEeCChHHHHHHHHHHHHcC---CeeEEEEeCCCCCchHHHHHHHHHhC
Q 006256 457 VLLTYGSSSAVEMILQHAHELG---KQFRVVIVDSRPKHEGKLLLRRLVRK 504 (653)
Q Consensus 457 vILT~g~Ss~Ve~vL~~A~e~g---k~f~ViV~ESRP~~EG~~La~eL~~~ 504 (653)
+|.||.....+..+|....++. ..++|+|++.-.......+++++...
T Consensus 2 ii~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~~~ 52 (185)
T cd04179 2 VIPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELAAR 52 (185)
T ss_pred eecccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHHHh
Confidence 3555555556666666665542 46677776655444445555554443
No 417
>PRK09135 pteridine reductase; Provisional
Probab=21.91 E-value=2.2e+02 Score=27.94 Aligned_cols=97 Identities=18% Similarity=0.146 Sum_probs=52.8
Q ss_pred CCCEEEEeCChHHHHHHHHH-HHHcCCeeEEEEeCCCCCchHHHHHHHHHhC-CCCEEEE-c----cchHHHHhh-----
Q 006256 454 DGDVLLTYGSSSAVEMILQH-AHELGKQFRVVIVDSRPKHEGKLLLRRLVRK-GLSCTYT-H----INAISYIIH----- 521 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~-A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~-GI~vT~I-~----DsAv~~iM~----- 521 (653)
.+.+||..|.+.-|..-|.. ..++ ..+|+++..+.......+...|... +-.+.++ . ...+..++.
T Consensus 5 ~~~~vlItGa~g~iG~~l~~~l~~~--g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 82 (249)
T PRK09135 5 SAKVALITGGARRIGAAIARTLHAA--GYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVAA 82 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 45678888887766544443 3333 4678888765544444555555543 2122222 2 234444454
Q ss_pred --hccEEEEcceeEecCCC-----e--------ecccchHHHHHHHh
Q 006256 522 --EVTRVFLGASSVLSNGT-----V--------CSRVGTACVAMVAY 553 (653)
Q Consensus 522 --~Vd~VllGAdaIlaNG~-----V--------~NKiGT~~lAl~Ak 553 (653)
.+|.||-.|-... .+. . .|-.|+..+.-++.
T Consensus 83 ~~~~d~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~ 128 (249)
T PRK09135 83 FGRLDALVNNASSFY-PTPLGSITEAQWDDLFASNLKAPFFLSQAAA 128 (249)
T ss_pred cCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHhchhHHHHHHHHH
Confidence 3687776663221 111 0 57788888877664
No 418
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=21.89 E-value=5.4e+02 Score=28.74 Aligned_cols=91 Identities=12% Similarity=0.190 Sum_probs=50.5
Q ss_pred cCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHh--CCCCEEEEccchHHHHhhhccEEEEcc
Q 006256 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR--KGLSCTYTHINAISYIIHEVTRVFLGA 530 (653)
Q Consensus 453 ~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~--~GI~vT~I~DsAv~~iM~~Vd~VllGA 530 (653)
+...+|+.+|.+..=..+.+.+++.| ++|++.|.++.. ....+|.+ .||.+.+-... . ..+.++|.||+..
T Consensus 4 ~~~~~~~v~G~G~sG~s~a~~L~~~G--~~v~~~D~~~~~---~~~~~l~~~~~g~~~~~~~~~-~-~~~~~~d~vV~sp 76 (448)
T PRK03803 4 QSDGLHIVVGLGKTGLSVVRFLARQG--IPFAVMDSREQP---PGLDTLAREFPDVELRCGGFD-C-ELLVQASEIIISP 76 (448)
T ss_pred ccCCeEEEEeecHhHHHHHHHHHhCC--CeEEEEeCCCCc---hhHHHHHhhcCCcEEEeCCCC-h-HHhcCCCEEEECC
Confidence 34457888876542223344455445 689999987643 23345766 37776653212 1 2245788887765
Q ss_pred eeEecCCCeecccchHHHHHHHhhCCCCee
Q 006256 531 SSVLSNGTVCSRVGTACVAMVAYGFHIPVL 560 (653)
Q Consensus 531 daIlaNG~V~NKiGT~~lAl~Ak~~~VPVy 560 (653)
+|-.+ ...-..|++.++|++
T Consensus 77 -~i~~~---------~p~~~~a~~~~i~i~ 96 (448)
T PRK03803 77 -GLALD---------TPALRAAAAMGIEVI 96 (448)
T ss_pred -CCCCC---------CHHHHHHHHCCCcEE
Confidence 44332 233445556666655
No 419
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=21.78 E-value=4.5e+02 Score=27.23 Aligned_cols=66 Identities=17% Similarity=0.179 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHH---cCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcceeEecC
Q 006256 465 SAVEMILQHAHE---LGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSN 536 (653)
Q Consensus 465 s~Ve~vL~~A~e---~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAdaIlaN 536 (653)
...+.++++|++ .+.++-|=|.=| .+|.+..+.|.+.||+|..+..-++.-.+- +...||+-|..-
T Consensus 63 ~d~e~mi~ea~~l~~~~~ni~IKIP~T---~~Gl~A~~~L~~~GI~vn~T~vfs~~Qa~~---Aa~aGa~yIspy 131 (220)
T PRK12653 63 TTAEGMVNDARKLRSIIADIVVKVPVT---AEGLAAIKMLKAEGIPTLGTAVYGAAQGLL---SALAGAEYVAPY 131 (220)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEeCCC---HHHHHHHHHHHHcCCCeeEEEecCHHHHHH---HHhcCCcEEEee
Confidence 334555666543 345544434333 368898999999999998776544443332 113456655543
No 420
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=21.74 E-value=7.8e+02 Score=26.21 Aligned_cols=108 Identities=14% Similarity=0.098 Sum_probs=57.0
Q ss_pred CCCEEEEeCChHHHHHH-HHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc-c----chHHHHhhhccEEE
Q 006256 454 DGDVLLTYGSSSAVEMI-LQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-I----NAISYIIHEVTRVF 527 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~v-L~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~-D----sAv~~iM~~Vd~Vl 527 (653)
.+.+||..|-+..|..- ++.+.++| .+|+++.-.+ .....+...+.. +-.++++. | ..+..++.++|.||
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G--~~V~~~~r~~-~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 84 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRG--YTVHATLRDP-AKSLHLLSKWKE-GDRLRLFRADLQEEGSFDEAVKGCDGVF 84 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCh-HHHHHHHHhhcc-CCeEEEEECCCCCHHHHHHHHcCCCEEE
Confidence 45678888876555433 34444444 5677664332 223333333332 33455542 2 34555667788888
Q ss_pred EcceeEecCC-----Ce-----ec-----ccchHHHHHHHhhCC-CCeeeeccc
Q 006256 528 LGASSVLSNG-----TV-----CS-----RVGTACVAMVAYGFH-IPVLVCCEA 565 (653)
Q Consensus 528 lGAdaIlaNG-----~V-----~N-----KiGT~~lAl~Ak~~~-VPVyV~aet 565 (653)
--|-..-.+. +. .| -.||..+.-+|+.++ +.-+|...+
T Consensus 85 h~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS 138 (353)
T PLN02896 85 HVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSS 138 (353)
T ss_pred ECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEec
Confidence 7764321111 00 12 268888888777664 655555444
No 421
>PRK09136 5'-methylthioadenosine phosphorylase; Validated
Probab=21.73 E-value=3.8e+02 Score=28.15 Aligned_cols=75 Identities=21% Similarity=0.117 Sum_probs=49.2
Q ss_pred EEEeCChHHHHHHHHHHH-HcCCe-eE--EEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcceeE
Q 006256 458 LLTYGSSSAVEMILQHAH-ELGKQ-FR--VVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSV 533 (653)
Q Consensus 458 ILT~g~Ss~Ve~vL~~A~-e~gk~-f~--ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAdaI 533 (653)
-+++-++..+...++++. +.|-+ ++ ||+.-+-|.+|-..=.+.|.. +|||+|
T Consensus 126 ~~~~~~d~~L~~~~~~~a~~~~~~~~~~Gvy~~~~GP~feT~AE~r~lr~------------------------~Gad~V 181 (245)
T PRK09136 126 DFTHPYSPMLRQRLLAAARAAGVSLVDGGVYAATQGPRLETAAEIARLER------------------------DGCDLV 181 (245)
T ss_pred CCcccCCHHHHHHHHHHHHHcCCcEEeccEEEEeeCCCcCCHHHHHHHHH------------------------cCCCEE
Confidence 345566666655555544 33433 32 888888888876643333332 366666
Q ss_pred ecCCCeecccchHHHHHHHhhCCCCeeeecc
Q 006256 534 LSNGTVCSRVGTACVAMVAYGFHIPVLVCCE 564 (653)
Q Consensus 534 laNG~V~NKiGT~~lAl~Ak~~~VPVyV~ae 564 (653)
= .-|...|.+|+++++||.+++-
T Consensus 182 g--------Ms~~pEa~~A~~~gi~~~~i~~ 204 (245)
T PRK09136 182 G--------MTGMPEAALARELGLPYACLAL 204 (245)
T ss_pred c--------CcHHHHHHHHHHcCCCEEEEEE
Confidence 4 3467889999999999999875
No 422
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=21.68 E-value=2.1e+02 Score=31.78 Aligned_cols=70 Identities=17% Similarity=0.215 Sum_probs=36.8
Q ss_pred EEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhh--hccEEEEcceeE
Q 006256 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIH--EVTRVFLGASSV 533 (653)
Q Consensus 457 vILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~--~Vd~VllGAdaI 533 (653)
.||.+|.+.--..+...+++.+....|++ -|.+.|..+.-+ .+...+.....+-.+.+ ++|.|+.|.+..
T Consensus 2 kvliiG~G~~~~~l~~~l~~~~~~~~i~~---~~~n~g~~~~~~----~~~~~~~d~~~l~~~~~~~~id~vi~~~e~~ 73 (420)
T PRK00885 2 KVLVIGSGGREHALAWKLAQSPLVEKVYV---APGNAGTALLAE----NVVIDVTDIEALVAFAKEEGIDLTVVGPEAP 73 (420)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCEEEE---eCCCHHHHhhcc----ccCCCCCCHHHHHHHHHHhCCCEEEECCchH
Confidence 68999988654455556665443346666 456666544311 11211122123333333 478888877653
No 423
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=21.60 E-value=1e+03 Score=26.98 Aligned_cols=105 Identities=20% Similarity=0.257 Sum_probs=63.1
Q ss_pred hccCCCEEEEeCCh-HHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH-HHHHhCCCCEEEEccc----hHHHHhh-hc
Q 006256 451 KIRDGDVLLTYGSS-SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RRLVRKGLSCTYTHIN----AISYIIH-EV 523 (653)
Q Consensus 451 ~I~dGdvILT~g~S-s~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La-~eL~~~GI~vT~I~Ds----Av~~iM~-~V 523 (653)
.+..|.--+-++.+ .++..++....+.| -+|++.++ =|..=.+++ +-|.+.||.|+|+.+. ....+++ ++
T Consensus 74 ~LEg~~~~~afsSGmaAI~~~~l~ll~~G--D~vl~~~~-~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~t 150 (396)
T COG0626 74 ELEGGEDAFAFSSGMAAISTALLALLKAG--DHVLLPDD-LYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKEPNT 150 (396)
T ss_pred HhhCCCcEEEecCcHHHHHHHHHHhcCCC--CEEEecCC-ccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcccCc
Confidence 34455544444444 34544455555445 46777666 233345665 6778999999988643 2344453 78
Q ss_pred cEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeecc
Q 006256 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCE 564 (653)
Q Consensus 524 d~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~ae 564 (653)
++|++-. -+| =++.-+=--.++-+||.+| ++|+..
T Consensus 151 k~v~lEt---PsN-P~l~v~DI~~i~~~A~~~g--~~vvVD 185 (396)
T COG0626 151 KLVFLET---PSN-PLLEVPDIPAIARLAKAYG--ALVVVD 185 (396)
T ss_pred eEEEEeC---CCC-cccccccHHHHHHHHHhcC--CEEEEE
Confidence 8888864 223 3445555667888999999 444443
No 424
>COG0424 Maf Nucleotide-binding protein implicated in inhibition of septum formation [Cell division and chromosome partitioning]
Probab=21.57 E-value=2.7e+02 Score=28.53 Aligned_cols=71 Identities=20% Similarity=0.272 Sum_probs=45.7
Q ss_pred HHHHHHHHcCCeeEEEEe--CCCCCc--hHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcceeEe-cCCCeeccc
Q 006256 469 MILQHAHELGKQFRVVIV--DSRPKH--EGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVL-SNGTVCSRV 543 (653)
Q Consensus 469 ~vL~~A~e~gk~f~ViV~--ESRP~~--EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAdaIl-aNG~V~NKi 543 (653)
.+|..+ |..|.|++. |..+.. .-.+++.+|+...- .+++...+ -|.+|||||.|+ -||-++.|-
T Consensus 16 elL~~~---gi~f~~~~~~iDE~~~~~~~P~~~v~~LA~~KA-------~~va~~~~-~~~~VigaDtvv~ldgrilgKP 84 (193)
T COG0424 16 ELLEQL---GIPFEVIPSDIDEPLLKAEEPREYVLRLAEEKA-------RAVAARLP-PDALVIGADTVVVLDGRILGKP 84 (193)
T ss_pred HHHHHC---CCCeEEecCCCCCCcccCCCHHHHHHHHHHHHH-------HHHHHhCC-CCCEEEecCeEEEECCEEecCC
Confidence 455544 789999975 333322 24667777766431 01222221 589999999875 588999999
Q ss_pred chHHHHH
Q 006256 544 GTACVAM 550 (653)
Q Consensus 544 GT~~lAl 550 (653)
.+..-|.
T Consensus 85 ~~~~eA~ 91 (193)
T COG0424 85 KDEEEAR 91 (193)
T ss_pred CCHHHHH
Confidence 9987664
No 425
>PRK07049 methionine gamma-lyase; Validated
Probab=21.57 E-value=7.8e+02 Score=27.65 Aligned_cols=55 Identities=16% Similarity=0.094 Sum_probs=34.2
Q ss_pred CCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH--HHHHhCCCCEEEEcc
Q 006256 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL--RRLVRKGLSCTYTHI 513 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La--~eL~~~GI~vT~I~D 513 (653)
.+.|+|-|-+.++..+|....+.|. +|++. .|.+.|.... +.|...|+++..+.|
T Consensus 99 ~~~iv~~sG~~Ai~~~l~al~~~Gd--~Vv~~--~p~Y~~~~~~~~~~l~~~Gi~~v~~~~ 155 (427)
T PRK07049 99 ESAALFSSGMSAIATTLLAFVRPGD--VILHS--QPLYGGTETLLAKTFRNFGVGAVGFAD 155 (427)
T ss_pred CcEEEEccHHHHHHHHHHHHhCCCC--EEEEc--CCCcccHHHHHHHHHHhcCcEEEEEeC
Confidence 3677777777777666666655554 45543 4777666443 446778998555443
No 426
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=21.55 E-value=9.7e+02 Score=25.98 Aligned_cols=71 Identities=7% Similarity=0.098 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHhcc-CC-CEEEEeC-----ChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEE
Q 006256 438 ILADRVIVKHAVTKIR-DG-DVLLTYG-----SSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTY 510 (653)
Q Consensus 438 ~~a~~~Ia~~a~~~I~-dG-dvILT~g-----~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~ 510 (653)
...|+.+++.-.+++. .| .+|-..| .+++++.++..... ..++.|++....-.+ . +..|...|+++..
T Consensus 85 l~~n~~~a~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~---~~~~~VI~gD~~t~~-D-a~rI~~~g~pvvq 159 (290)
T PRK10463 85 LDKNNRLAERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKD---SVPCAVIEGDQQTVN-D-AARIRATGTPAIQ 159 (290)
T ss_pred HHHhHHHHHHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhcc---CCCEEEECCCcCcHH-H-HHHHHhcCCcEEE
Confidence 3455555555555553 23 3333333 35667666655432 236666665544332 2 4567888998877
Q ss_pred Ecc
Q 006256 511 THI 513 (653)
Q Consensus 511 I~D 513 (653)
|.-
T Consensus 160 i~t 162 (290)
T PRK10463 160 VNT 162 (290)
T ss_pred ecC
Confidence 754
No 427
>PRK14852 hypothetical protein; Provisional
Probab=21.46 E-value=9.1e+02 Score=30.73 Aligned_cols=130 Identities=12% Similarity=0.085 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCC---------CCC--ch-
Q 006256 426 HSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDS---------RPK--HE- 493 (653)
Q Consensus 426 ~e~I~~fi~E~i~~a~~~Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ES---------RP~--~E- 493 (653)
.+..+.|.+++.......|+..+.+++. +.+|+..|.+-+=..++......|.. ++.++|- |-. .+
T Consensus 304 ~~~~~~~~~~ry~Rqi~lig~e~Q~kL~-~srVlVvGlGGlGs~ia~~LAraGVG-~I~L~D~D~Ve~SNLNRQ~l~~~~ 381 (989)
T PRK14852 304 LETRDAYTDIAFSRNLGLVDYAGQRRLL-RSRVAIAGLGGVGGIHLMTLARTGIG-NFNLADFDAYSPVNLNRQYGASIA 381 (989)
T ss_pred HHHHHHHHHHHhhchHhhcCHHHHHHHh-cCcEEEECCcHHHHHHHHHHHHcCCC-eEEEEcCCEecccccccccCCChh
Confidence 3555666666433222335566667775 57889998874433344555555764 2332221 211 11
Q ss_pred --HH----HHHHHHHh--CCCCEEEEc----cchHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 494 --GK----LLLRRLVR--KGLSCTYTH----INAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 494 --G~----~La~eL~~--~GI~vT~I~----DsAv~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
|+ -+++.|.+ -.++++.+. ...+..++..+|.||-+.|.+.. .+--+... .|..+||||+.
T Consensus 382 dIG~~Kaevaa~~l~~INP~v~I~~~~~~I~~en~~~fl~~~DiVVDa~D~~~~------~~rr~l~~-~c~~~~IP~I~ 454 (989)
T PRK14852 382 SFGRGKLDVMTERALSVNPFLDIRSFPEGVAAETIDAFLKDVDLLVDGIDFFAL------DIRRRLFN-RALELGIPVIT 454 (989)
T ss_pred hCCChHHHHHHHHHHHHCCCCeEEEEecCCCHHHHHHHhhCCCEEEECCCCccH------HHHHHHHH-HHHHcCCCEEE
Confidence 21 12355654 346666653 34466677889999877775421 12223333 36899999997
Q ss_pred ecc
Q 006256 562 CCE 564 (653)
Q Consensus 562 ~ae 564 (653)
++.
T Consensus 455 ag~ 457 (989)
T PRK14852 455 AGP 457 (989)
T ss_pred eec
Confidence 654
No 428
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=21.46 E-value=6.8e+02 Score=27.26 Aligned_cols=48 Identities=15% Similarity=0.078 Sum_probs=26.9
Q ss_pred EeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEE
Q 006256 460 TYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT 511 (653)
Q Consensus 460 T~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I 511 (653)
+||++..+..+++..++.+....|++ -...-.+.++.|.+.|+++..+
T Consensus 115 ~~G~~~~~~~~i~~ik~~~p~v~Vi~----G~v~t~~~A~~l~~aGaD~I~v 162 (325)
T cd00381 115 AHGHSVYVIEMIKFIKKKYPNVDVIA----GNVVTAEAARDLIDAGADGVKV 162 (325)
T ss_pred CCCCcHHHHHHHHHHHHHCCCceEEE----CCCCCHHHHHHHHhcCCCEEEE
Confidence 45666555566777766554445554 1112235567777777666554
No 429
>cd04252 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP). The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to th
Probab=21.38 E-value=5.7e+02 Score=26.54 Aligned_cols=105 Identities=14% Similarity=0.083 Sum_probs=66.3
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCC-------Cch------HHHHHHHHHhCCCCEEEEcc---------
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRP-------KHE------GKLLLRRLVRKGLSCTYTHI--------- 513 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP-------~~E------G~~La~eL~~~GI~vT~I~D--------- 513 (653)
..||+||.++.+...+... |...+ ++...|- ..+ -.++...|.+.|++..-++-
T Consensus 30 ~~VlVHGgg~~i~~~~~~~---gi~~~-~~~g~RvT~~~~l~~v~~al~~vn~~iv~~l~~~g~~a~~l~~~~~~a~~~~ 105 (248)
T cd04252 30 YPIVVHGAGPQLNEELEAA---GVEPE-YVDGLRVTDPETLAVARKVFLEENLKLVEALERNGARARPITSGVFEAEYLD 105 (248)
T ss_pred cEEEEeCCCHHHHHHHHHc---CCCcE-eeCCcccCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCceEEEEECc
Confidence 5799999999887665543 33221 1111111 111 23445677778876443321
Q ss_pred ---------------chHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCC-eeeecc
Q 006256 514 ---------------NAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIP-VLVCCE 564 (653)
Q Consensus 514 ---------------sAv~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VP-VyV~ae 564 (653)
..+-.++..=...++.-+++..+|.++|--|=...+.+|+..+.- ++.++.
T Consensus 106 ~~d~g~~G~v~~i~~~~i~~~L~~g~IPVi~p~~~~~~g~~~nvnaD~~A~~lA~aL~a~kli~ltd 172 (248)
T cd04252 106 KDKYGLVGKITGVNKAPIEAAIRAGYLPILTSLAETPSGQLLNVNADVAAGELARVLEPLKIVFLNE 172 (248)
T ss_pred CccCCccCceeeECHHHHHHHHHCCCeEEECCceECCCCCEEEECHHHHHHHHHHHcCCCeEEEEEC
Confidence 233344444556788888888999999999999999999999864 555554
No 430
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=21.31 E-value=1.1e+03 Score=25.98 Aligned_cols=99 Identities=13% Similarity=0.137 Sum_probs=53.5
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH-HHH-HhCCCCEEEEccc-------hHHHHh-hhccE
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RRL-VRKGLSCTYTHIN-------AISYII-HEVTR 525 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La-~eL-~~~GI~vT~I~Ds-------Av~~iM-~~Vd~ 525 (653)
.+++|.|.+.+++.++... ...+.-+|++.+ |.+....-+ +.+ ...|+++.++... .+-..+ +++..
T Consensus 131 ~v~~~~g~t~~~~~~~~a~-~~~~g~~Vlv~~--~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~d~~~l~~~i~~~t~~ 207 (447)
T PRK00451 131 NASMYDGATALAEAALMAV-RITKRKKVLVSG--AVHPEYREVLKTYLKGQGIEVVEVPYEDGVTDLEALEAAVDDDTAA 207 (447)
T ss_pred eEEecCcHHHHHHHHHHHH-HhcCCCEEEEeC--ccCHHHHHHHHHHHHhCCcEEEEecCCCCCCCHHHHHHhcCCCeEE
Confidence 4567766666666555433 212334677754 445433333 333 3468988888532 122222 23444
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHhhCCCCeeee
Q 006256 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (653)
Q Consensus 526 VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~ 562 (653)
|++.. . ...|.+ .. --.|+-+||++++.|+|.
T Consensus 208 v~l~~-p-n~tG~v-~~--l~~I~~~a~~~~~~~iv~ 239 (447)
T PRK00451 208 VVVQY-P-NFFGVI-ED--LEEIAEIAHAGGALFIVG 239 (447)
T ss_pred EEEEC-C-CCCCee-CC--HHHHHHHHHHCCCEEEEE
Confidence 44443 2 334433 33 345788999999998883
No 431
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=21.24 E-value=8.9e+02 Score=26.63 Aligned_cols=110 Identities=12% Similarity=0.071 Sum_probs=64.4
Q ss_pred HHHHHHHhccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCC--------CCC-----chHH----HHHHHHHhC--
Q 006256 444 IVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDS--------RPK-----HEGK----LLLRRLVRK-- 504 (653)
Q Consensus 444 Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ES--------RP~-----~EG~----~La~eL~~~-- 504 (653)
++..+.+++. +.+||..|.+.+=..++..+...|..--.+|... |-. .-|+ .++++|.+.
T Consensus 18 ~g~~~q~~L~-~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np 96 (355)
T PRK05597 18 IGQQGQQSLF-DAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNP 96 (355)
T ss_pred cCHHHHHHHh-CCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCC
Confidence 5566667775 4788999887544445555556676522222211 111 1121 223566654
Q ss_pred CCCEEEEc----cchHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeec
Q 006256 505 GLSCTYTH----INAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (653)
Q Consensus 505 GI~vT~I~----DsAv~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~a 563 (653)
.+.++.+. ...+..++..+|.||.+.|.+ .--+.+.-+|+.++|||+.++
T Consensus 97 ~v~v~~~~~~i~~~~~~~~~~~~DvVvd~~d~~---------~~r~~~n~~c~~~~ip~v~~~ 150 (355)
T PRK05597 97 DVKVTVSVRRLTWSNALDELRDADVILDGSDNF---------DTRHLASWAAARLGIPHVWAS 150 (355)
T ss_pred CcEEEEEEeecCHHHHHHHHhCCCEEEECCCCH---------HHHHHHHHHHHHcCCCEEEEE
Confidence 45555442 222345678899999888753 233567889999999988653
No 432
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=21.19 E-value=3.4e+02 Score=26.26 Aligned_cols=73 Identities=14% Similarity=0.187 Sum_probs=45.5
Q ss_pred CCCEEEEeC--ChHHHHHHHHHHHHcCCeeEEEEeCC--CCCc-hHHHHH-HHHHhCCCCEEEEccchHHHHhhhccEEE
Q 006256 454 DGDVLLTYG--SSSAVEMILQHAHELGKQFRVVIVDS--RPKH-EGKLLL-RRLVRKGLSCTYTHINAISYIIHEVTRVF 527 (653)
Q Consensus 454 dGdvILT~g--~Ss~Ve~vL~~A~e~gk~f~ViV~ES--RP~~-EG~~La-~eL~~~GI~vT~I~DsAv~~iM~~Vd~Vl 527 (653)
+|-+|.-.| ++.++..++..+..-|..+.++..+. -|.. +-...+ ....+.|..+++. ..+.-.++.+|.|.
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~--~~~~e~l~~aDvvy 78 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITIT--DDIEEALKGADVVY 78 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEE--SSHHHHHTT-SEEE
T ss_pred CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEE--eCHHHhcCCCCEEE
Confidence 356677777 57888888877877787776666565 2321 222333 3445568778877 45566677777765
Q ss_pred E
Q 006256 528 L 528 (653)
Q Consensus 528 l 528 (653)
.
T Consensus 79 ~ 79 (158)
T PF00185_consen 79 T 79 (158)
T ss_dssp E
T ss_pred E
Confidence 4
No 433
>PRK11175 universal stress protein UspE; Provisional
Probab=21.17 E-value=6.9e+02 Score=25.81 Aligned_cols=61 Identities=11% Similarity=0.022 Sum_probs=35.9
Q ss_pred HHhCCCCEEEEc---cchHHHHhh-----hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeecc
Q 006256 501 LVRKGLSCTYTH---INAISYIIH-----EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCE 564 (653)
Q Consensus 501 L~~~GI~vT~I~---DsAv~~iM~-----~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~ae 564 (653)
+...|+++.... ....-.+.. .+|+||+|++.- +|---.-.|+..-. +.++.++||+|+-+
T Consensus 78 ~~~~~~~~~~~v~~~g~~~~~i~~~a~~~~~DLiV~G~~~~--~~~~~~~~gs~~~~-l~~~~~~pvlvv~~ 146 (305)
T PRK11175 78 YLDAGIPIEIKVVWHNRPFEAIIQEVIAGGHDLVVKMTHQH--DKLESVIFTPTDWH-LLRKCPCPVLMVKD 146 (305)
T ss_pred HhhcCCceEEEEecCCCcHHHHHHHHHhcCCCEEEEeCCCC--cHHHhhccChhHHH-HHhcCCCCEEEecc
Confidence 445788876532 223333332 699999999863 22111123443333 45888999999966
No 434
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=21.12 E-value=1e+03 Score=25.31 Aligned_cols=36 Identities=11% Similarity=-0.078 Sum_probs=29.7
Q ss_pred HHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcc
Q 006256 495 KLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (653)
Q Consensus 495 ~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGA 530 (653)
.++++.+.+.|+++..|+.+.-+.+-+.+|.+|.-.
T Consensus 111 ~~~~~~ak~~g~~vi~iT~~~~s~la~~ad~~l~~~ 146 (326)
T PRK10892 111 LALIPVLKRLHVPLICITGRPESSMARAADIHLCVK 146 (326)
T ss_pred HHHHHHHHHCCCcEEEEECCCCCcccccCCEEEEeC
Confidence 455688899999999999988888888899988643
No 435
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=21.12 E-value=8.2e+02 Score=28.48 Aligned_cols=65 Identities=12% Similarity=0.137 Sum_probs=41.1
Q ss_pred ccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEE
Q 006256 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFL 528 (653)
Q Consensus 452 I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~Vll 528 (653)
.-.|.+|+.+|++..=..+...++. ...+|+|+|..|...- +....|..+. . +..+++.+|.|++
T Consensus 251 ~LaGKtVgVIG~G~IGr~vA~rL~a--~Ga~ViV~e~dp~~a~-----~A~~~G~~~~--~---leell~~ADIVI~ 315 (476)
T PTZ00075 251 MIAGKTVVVCGYGDVGKGCAQALRG--FGARVVVTEIDPICAL-----QAAMEGYQVV--T---LEDVVETADIFVT 315 (476)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCchhHH-----HHHhcCceec--c---HHHHHhcCCEEEE
Confidence 3468999999999855555566654 4457999988776421 1122465432 1 2345678888877
No 436
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=21.09 E-value=1.3e+02 Score=33.68 Aligned_cols=30 Identities=30% Similarity=0.347 Sum_probs=23.1
Q ss_pred EEEEeCChHHHHHHHHHHHHcCCeeEEEEeCC
Q 006256 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDS 488 (653)
Q Consensus 457 vILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ES 488 (653)
+||..|.+..-..+++.|++.|- +|+++++
T Consensus 4 kili~g~g~~~~~~~~aa~~lG~--~vv~~~~ 33 (449)
T TIGR00514 4 KILIANRGEIALRILRACKELGI--KTVAVHS 33 (449)
T ss_pred eEEEeCCCHHHHHHHHHHHHcCC--eEEEEEC
Confidence 68999999877788999987654 5666654
No 437
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=21.08 E-value=8.8e+02 Score=24.61 Aligned_cols=111 Identities=11% Similarity=0.052 Sum_probs=59.8
Q ss_pred HHHHHHHHhccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCC---------CCc----hH----HHHHHHHHh--
Q 006256 443 VIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSR---------PKH----EG----KLLLRRLVR-- 503 (653)
Q Consensus 443 ~Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESR---------P~~----EG----~~La~eL~~-- 503 (653)
.++..+.++|.+ ..|+..|.+.+=..++..+...|.. +++++|-. -.+ -| ..++++|.+
T Consensus 17 ~~g~~~q~~L~~-~~V~ViG~GglGs~ia~~La~~Gvg-~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~ln 94 (212)
T PRK08644 17 RHTPKLLEKLKK-AKVGIAGAGGLGSNIAVALARSGVG-NLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEIN 94 (212)
T ss_pred hcCHHHHHHHhC-CCEEEECcCHHHHHHHHHHHHcCCC-eEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHC
Confidence 367777777764 5678888765433444555555665 33333322 100 12 122355654
Q ss_pred CCCCEEEEc----cchHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhC-CCCeeeecc
Q 006256 504 KGLSCTYTH----INAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGF-HIPVLVCCE 564 (653)
Q Consensus 504 ~GI~vT~I~----DsAv~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~-~VPVyV~ae 564 (653)
..+.++.+. +..+..++..+|.||-..|... -.+.+.-.|..+ ++|++.++.
T Consensus 95 p~v~v~~~~~~i~~~~~~~~~~~~DvVI~a~D~~~---------~r~~l~~~~~~~~~~p~I~~~~ 151 (212)
T PRK08644 95 PFVEIEAHNEKIDEDNIEELFKDCDIVVEAFDNAE---------TKAMLVETVLEHPGKKLVAASG 151 (212)
T ss_pred CCCEEEEEeeecCHHHHHHHHcCCCEEEECCCCHH---------HHHHHHHHHHHhCCCCEEEeeh
Confidence 345665443 3334456678898877755442 123333445555 999998753
No 438
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=21.04 E-value=8.5e+02 Score=24.40 Aligned_cols=109 Identities=14% Similarity=0.069 Sum_probs=61.3
Q ss_pred HHHHHHHhccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCC----------c----hHH----HHHHHHHhCC
Q 006256 444 IVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPK----------H----EGK----LLLRRLVRKG 505 (653)
Q Consensus 444 Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~----------~----EG~----~La~eL~~~G 505 (653)
++..+.++|. +..||..|.+.+-..+++.+...|-. ++.++|.... + -|+ .+++.|.+..
T Consensus 11 ~G~e~Q~~L~-~s~VlIiG~gglG~evak~La~~GVg-~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lN 88 (197)
T cd01492 11 WGLEAQKRLR-SARILLIGLKGLGAEIAKNLVLSGIG-SLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALN 88 (197)
T ss_pred hCHHHHHHHH-hCcEEEEcCCHHHHHHHHHHHHcCCC-EEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHC
Confidence 5556666675 46788888877655666777777865 3333332221 1 121 2235566554
Q ss_pred --CCEEEEcc---chHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeec
Q 006256 506 --LSCTYTHI---NAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (653)
Q Consensus 506 --I~vT~I~D---sAv~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~a 563 (653)
+.++.+.. ...-.++.++|.||...|.+ ---..+.-.|+.+++||+.+.
T Consensus 89 p~v~i~~~~~~~~~~~~~~~~~~dvVi~~~~~~---------~~~~~ln~~c~~~~ip~i~~~ 142 (197)
T cd01492 89 PRVKVSVDTDDISEKPEEFFSQFDVVVATELSR---------AELVKINELCRKLGVKFYATG 142 (197)
T ss_pred CCCEEEEEecCccccHHHHHhCCCEEEECCCCH---------HHHHHHHHHHHHcCCCEEEEE
Confidence 33333321 11334567888888765432 122445668999999996654
No 439
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=20.93 E-value=5.4e+02 Score=28.96 Aligned_cols=59 Identities=8% Similarity=0.086 Sum_probs=35.7
Q ss_pred HHHHHHHHhCCCCEE-EEccchHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeec
Q 006256 495 KLLLRRLVRKGLSCT-YTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (653)
Q Consensus 495 ~~La~eL~~~GI~vT-~I~DsAv~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~a 563 (653)
.++.+.|.+.||++. +++++...-+ +.... |+-.+ +++..+++..-.+ +.+++|++.+.
T Consensus 181 ~el~~lL~~~Gi~v~~~lp~~~~~d~-~~~~~---~~~~~-----~~~~~~~~~A~~L-~~~GiP~~~~~ 240 (427)
T PRK02842 181 DQLTLEFKKLGIGVVGFLPARRFTEL-PAIGP---GTVVA-----LAQPFLSDTARAL-RERGAKVLTAP 240 (427)
T ss_pred HHHHHHHHHcCCeeEEEeCCccHHHH-hhcCc---CcEEE-----EeCHHHHHHHHHH-HHcCCccccCC
Confidence 667788899999986 7777654332 22110 11111 2344455655567 88999998764
No 440
>PRK14362 Maf-like protein; Provisional
Probab=20.92 E-value=5.2e+02 Score=26.54 Aligned_cols=75 Identities=19% Similarity=0.209 Sum_probs=46.4
Q ss_pred cCCeeEEE---EeC-C-CCCchHHHHHHHHHhCCCCEEEEccchHHHHhh-hccEEEEcceeEe-cCCCeecccchHHHH
Q 006256 477 LGKQFRVV---IVD-S-RPKHEGKLLLRRLVRKGLSCTYTHINAISYIIH-EVTRVFLGASSVL-SNGTVCSRVGTACVA 549 (653)
Q Consensus 477 ~gk~f~Vi---V~E-S-RP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~-~Vd~VllGAdaIl-aNG~V~NKiGT~~lA 549 (653)
.|-.|.|+ +.| + .+...-..++.+|+... |- .+.. .-+.++||||.|. -||.++.|=.+..-|
T Consensus 30 ~g~~f~v~~~~~dEe~~~~~~~p~~~v~~lA~~K---------A~-~v~~~~~~~~VI~ADTvV~~~g~ilgKP~~~eeA 99 (207)
T PRK14362 30 MGLPFEVILPGAAEPSPIEGEQPEAYARRAAEAK---------AR-AVAADHAGRLVIAADTVVALDGMILGKPADRADA 99 (207)
T ss_pred CCCCcEEECCCCCCCCCCCCCCHHHHHHHHHHHH---------HH-HHHHhCCCCEEEEeCeEEEeCCEEcCCCCCHHHH
Confidence 38889988 445 3 22222456666666532 11 1111 2367999999965 899999999998766
Q ss_pred --HHHhhCCCCeee
Q 006256 550 --MVAYGFHIPVLV 561 (653)
Q Consensus 550 --l~Ak~~~VPVyV 561 (653)
++-+..|....|
T Consensus 100 ~~~L~~lsG~~H~V 113 (207)
T PRK14362 100 LSMLRRLAGRTHEV 113 (207)
T ss_pred HHHHHHhCCCceEE
Confidence 455555654443
No 441
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=20.90 E-value=1.1e+02 Score=32.78 Aligned_cols=92 Identities=22% Similarity=0.247 Sum_probs=56.4
Q ss_pred HHHhccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHH-----HHHHHhCCCCEEEEccchHHHHhhh
Q 006256 448 AVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-----LRRLVRKGLSCTYTHINAISYIIHE 522 (653)
Q Consensus 448 a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~L-----a~eL~~~GI~vT~I~DsAv~~iM~~ 522 (653)
+-.++.+|.+||-|++--.|. -+++.+.| ..++-.=..|...|+-+ .+.+.+ ..++.+|.|..++.-=.-
T Consensus 130 ae~Lv~eGF~VlPY~~~D~v~--a~rLed~G--c~aVMPlgsPIGSg~Gl~n~~~l~~i~e-~~~vpVivdAGIgt~sDa 204 (267)
T CHL00162 130 AEFLVKKGFTVLPYINADPML--AKHLEDIG--CATVMPLGSPIGSGQGLQNLLNLQIIIE-NAKIPVIIDAGIGTPSEA 204 (267)
T ss_pred HHHHHHCCCEEeecCCCCHHH--HHHHHHcC--CeEEeeccCcccCCCCCCCHHHHHHHHH-cCCCcEEEeCCcCCHHHH
Confidence 334678999999999987651 23444334 34555556677666544 334444 356778888766554333
Q ss_pred ccEEEEcceeEecCCCeecccch
Q 006256 523 VTRVFLGASSVLSNGTVCSRVGT 545 (653)
Q Consensus 523 Vd~VllGAdaIlaNG~V~NKiGT 545 (653)
+...=+|||+|+-|-+++ |.+-
T Consensus 205 ~~AmElGaDgVL~nSaIa-kA~d 226 (267)
T CHL00162 205 SQAMELGASGVLLNTAVA-QAKN 226 (267)
T ss_pred HHHHHcCCCEEeecceee-cCCC
Confidence 444557888888886555 5443
No 442
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=20.90 E-value=85 Score=31.35 Aligned_cols=19 Identities=16% Similarity=0.009 Sum_probs=14.6
Q ss_pred HHHHHHhhCCCCeeeeccc
Q 006256 547 CVAMVAYGFHIPVLVCCEA 565 (653)
Q Consensus 547 ~lAl~Ak~~~VPVyV~aet 565 (653)
.+..+.+.+++|++-+-+.
T Consensus 183 ~~~~l~~~~gi~vlg~ip~ 201 (222)
T PRK00090 183 NLATLERLLPAPLLGELPY 201 (222)
T ss_pred HHHHHHHHcCCCeEEecCC
Confidence 5667788889999977664
No 443
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=20.89 E-value=1.1e+02 Score=32.26 Aligned_cols=97 Identities=16% Similarity=0.139 Sum_probs=57.7
Q ss_pred EEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhh--hccEEEEcceeE-
Q 006256 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIH--EVTRVFLGASSV- 533 (653)
Q Consensus 457 vILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~--~Vd~VllGAdaI- 533 (653)
.||..|.+..|...|..+.++ +.+.|+.+ +|....-. ...++..++. +.|.||-=|--.
T Consensus 2 riLI~GasG~lG~~l~~~l~~-~~~~v~~~-~r~~~dl~----------------d~~~~~~~~~~~~pd~Vin~aa~~~ 63 (286)
T PF04321_consen 2 RILITGASGFLGSALARALKE-RGYEVIAT-SRSDLDLT----------------DPEAVAKLLEAFKPDVVINCAAYTN 63 (286)
T ss_dssp EEEEETTTSHHHHHHHHHHTT-TSEEEEEE-STTCS-TT----------------SHHHHHHHHHHH--SEEEE------
T ss_pred EEEEECCCCHHHHHHHHHHhh-CCCEEEEe-CchhcCCC----------------CHHHHHHHHHHhCCCeEeccceeec
Confidence 689999888888777777653 56788887 55532111 1112222222 234444322100
Q ss_pred ----ecC---CCeecccchHHHHHHHhhCCCCeeeeccccccccc
Q 006256 534 ----LSN---GTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHER 571 (653)
Q Consensus 534 ----laN---G~V~NKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~ 571 (653)
-.| -..+|-.|+..+|-+|+.++++++-++..+=|+..
T Consensus 64 ~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~~li~~STd~VFdG~ 108 (286)
T PF04321_consen 64 VDACEKNPEEAYAINVDATKNLAEACKERGARLIHISTDYVFDGD 108 (286)
T ss_dssp HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEEEEEEGGGS-SS
T ss_pred HHhhhhChhhhHHHhhHHHHHHHHHHHHcCCcEEEeeccEEEcCC
Confidence 001 23477899999999999999999999988878655
No 444
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=20.85 E-value=5.7e+02 Score=27.10 Aligned_cols=109 Identities=10% Similarity=0.045 Sum_probs=58.4
Q ss_pred CCCEEEEeCChHHHHHHH-HHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEE-cc----chHHHHhhhccEEE
Q 006256 454 DGDVLLTYGSSSAVEMIL-QHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT-HI----NAISYIIHEVTRVF 527 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL-~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I-~D----sAv~~iM~~Vd~Vl 527 (653)
.|.+||..|-+..+..-| +.+.++|...+|++++..+.. ...+...+.. -.++++ .| ..+..++.++|.||
T Consensus 3 ~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~-~~~~~~~~~~--~~~~~v~~Dl~d~~~l~~~~~~iD~Vi 79 (324)
T TIGR03589 3 NNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELK-QWEMQQKFPA--PCLRFFIGDVRDKERLTRALRGVDYVV 79 (324)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhH-HHHHHHHhCC--CcEEEEEccCCCHHHHHHHHhcCCEEE
Confidence 366788888765554333 334444534567776543321 1223333322 234433 22 34556677788887
Q ss_pred EcceeEe-c--CCC-----eecccchHHHHHHHhhCCCCeeeeccc
Q 006256 528 LGASSVL-S--NGT-----VCSRVGTACVAMVAYGFHIPVLVCCEA 565 (653)
Q Consensus 528 lGAdaIl-a--NG~-----V~NKiGT~~lAl~Ak~~~VPVyV~aet 565 (653)
--|-... . +-+ -.|-.||..+.-+|+.+++.-+|...+
T Consensus 80 h~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS 125 (324)
T TIGR03589 80 HAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALST 125 (324)
T ss_pred ECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 6543210 0 000 145579999999999998865554443
No 445
>PRK07454 short chain dehydrogenase; Provisional
Probab=20.84 E-value=8.1e+02 Score=24.11 Aligned_cols=74 Identities=19% Similarity=0.082 Sum_probs=41.6
Q ss_pred CCCEEEEeCChHHHHH-HHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEE-cc----chHHHHhh------
Q 006256 454 DGDVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT-HI----NAISYIIH------ 521 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~-vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I-~D----sAv~~iM~------ 521 (653)
++.+||..|.+.-+.. +.+.+.++|. +|+++. |...+..++...+.+.+-.+.++ +| ..+..++.
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGW--DLALVA-RSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQF 81 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEe-CCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4567888887665533 3444555554 677775 44444555566666655555443 33 23334444
Q ss_pred -hccEEEEcc
Q 006256 522 -EVTRVFLGA 530 (653)
Q Consensus 522 -~Vd~VllGA 530 (653)
.+|.||-.|
T Consensus 82 ~~id~lv~~a 91 (241)
T PRK07454 82 GCPDVLINNA 91 (241)
T ss_pred CCCCEEEECC
Confidence 367777655
No 446
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=20.80 E-value=3.8e+02 Score=27.30 Aligned_cols=107 Identities=12% Similarity=0.050 Sum_probs=53.3
Q ss_pred EEEeCChHHHH-HHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHh-CCCCEEEE---ccchHHHHhhh--ccEEEEcc
Q 006256 458 LLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-KGLSCTYT---HINAISYIIHE--VTRVFLGA 530 (653)
Q Consensus 458 ILT~g~Ss~Ve-~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~-~GI~vT~I---~DsAv~~iM~~--Vd~VllGA 530 (653)
||..|-+..+. .+++++.+.|..++|++++..........+..+.. .++.+... ....+..++.. +|.||--|
T Consensus 2 ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~a 81 (317)
T TIGR01181 2 ILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDIGDRELVSRLFTEHQPDAVVHFA 81 (317)
T ss_pred EEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhccCCCcEEEEcCCcCHHHHHHHHhhcCCCEEEEcc
Confidence 55555544333 33444445555578887764322111111222221 23433221 22345566665 88888766
Q ss_pred eeEecCCC--------eecccchHHHHHHHhhC--CCCeeeecc
Q 006256 531 SSVLSNGT--------VCSRVGTACVAMVAYGF--HIPVLVCCE 564 (653)
Q Consensus 531 daIlaNG~--------V~NKiGT~~lAl~Ak~~--~VPVyV~ae 564 (653)
-....+-. -.|-.|+..++-+|+++ ++.++.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss 125 (317)
T TIGR01181 82 AESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHIST 125 (317)
T ss_pred cccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeec
Confidence 43321111 24667888888888875 456554443
No 447
>PRK12828 short chain dehydrogenase; Provisional
Probab=20.78 E-value=5.4e+02 Score=24.98 Aligned_cols=109 Identities=13% Similarity=0.003 Sum_probs=54.6
Q ss_pred CCCEEEEeCChHHHHH-HHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc---cchHHHHhh-------h
Q 006256 454 DGDVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH---INAISYIIH-------E 522 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~-vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~---DsAv~~iM~-------~ 522 (653)
.|.+||..|-+..+.. +.+.+.++| .+|+++...+. ...+...+|...++...... ...+..++. .
T Consensus 6 ~~k~vlItGatg~iG~~la~~l~~~G--~~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (239)
T PRK12828 6 QGKVVAITGGFGGLGRATAAWLAARG--ARVALIGRGAA-PLSQTLPGVPADALRIGGIDLVDPQAARRAVDEVNRQFGR 82 (239)
T ss_pred CCCEEEEECCCCcHhHHHHHHHHHCC--CeEEEEeCChH-hHHHHHHHHhhcCceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence 3678999988765543 334455544 46777776553 22334455655555433321 223333343 3
Q ss_pred ccEEEEcceeEecCC------------CeecccchHHHHHHHh----hCCCCeeeeccc
Q 006256 523 VTRVFLGASSVLSNG------------TVCSRVGTACVAMVAY----GFHIPVLVCCEA 565 (653)
Q Consensus 523 Vd~VllGAdaIlaNG------------~V~NKiGT~~lAl~Ak----~~~VPVyV~aet 565 (653)
+|.||-.|-...... --.|-.|++.+.-++. ..++..+|...+
T Consensus 83 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS 141 (239)
T PRK12828 83 LDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGRIVNIGA 141 (239)
T ss_pred cCEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCCEEEEECc
Confidence 666665543221100 0155667766654442 345555554443
No 448
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=20.76 E-value=2.9e+02 Score=28.84 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=24.0
Q ss_pred hHHHHHHHHHhCCCCEEEEccc-hHHHHh--hhccEEEEcce
Q 006256 493 EGKLLLRRLVRKGLSCTYTHIN-AISYII--HEVTRVFLGAS 531 (653)
Q Consensus 493 EG~~La~eL~~~GI~vT~I~Ds-Av~~iM--~~Vd~VllGAd 531 (653)
.|..+.+.|.+.|+.|.+|..+ -+...+ .++|.||...+
T Consensus 24 s~~~i~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~~~~ 65 (304)
T PRK01372 24 SGAAVLAALREAGYDAHPIDPGEDIAAQLKELGFDRVFNALH 65 (304)
T ss_pred hHHHHHHHHHHCCCEEEEEecCcchHHHhccCCCCEEEEecC
Confidence 4667777888888888777432 222222 25777777543
No 449
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=20.72 E-value=8.5e+02 Score=25.83 Aligned_cols=102 Identities=15% Similarity=0.041 Sum_probs=54.6
Q ss_pred CCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcceeEe
Q 006256 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVL 534 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAdaIl 534 (653)
..+++|.|...++..++ .+ ..| -+|++ ++ |.+.+... .+...|+++..+....+...+.+.+++++--=. -
T Consensus 65 ~~I~it~Gs~~al~~~~-~~-~~g--d~v~v-~~-P~y~~~~~--~~~~~g~~~~~v~~~~~~~~~~~~~~v~l~nP~-N 135 (330)
T PRK05664 65 PQLLPVAGSQAAIQALP-RL-RAP--GRVGV-LS-PCYAEHAH--AWRRAGHQVRELDEAEVEAALDSLDVLVVVNPN-N 135 (330)
T ss_pred CCEEECcCHHHHHHHHH-Hc-cCC--CEEEE-cC-CChHHHHH--HHHHcCCeEEEechhhHhhhhcCCCEEEEeCCc-C
Confidence 36888888888875443 22 223 34444 33 77665543 334568888888765565555555544332110 1
Q ss_pred cCCCeecccchHHHHHHHhhCCCCeeeecccc
Q 006256 535 SNGTVCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (653)
Q Consensus 535 aNG~V~NKiGT~~lAl~Ak~~~VPVyV~aety 566 (653)
..|.+++.-==..++-.|+.+++ ++|+=|.|
T Consensus 136 PTG~~~s~~~l~~l~~~~~~~~~-~iI~DE~y 166 (330)
T PRK05664 136 PTGRRFDPARLLAWHARLAARGG-WLVVDEAF 166 (330)
T ss_pred CCCCccCHHHHHHHHHHHHhcCC-EEEEECCc
Confidence 22443333333345556677787 44444554
No 450
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=20.68 E-value=3.3e+02 Score=30.28 Aligned_cols=104 Identities=13% Similarity=0.114 Sum_probs=69.0
Q ss_pred CCCEEEEeC--ChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHH----HHHHHHh-C-CCCEEEEccch--HHHHhhhc
Q 006256 454 DGDVLLTYG--SSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKL----LLRRLVR-K-GLSCTYTHINA--ISYIIHEV 523 (653)
Q Consensus 454 dGdvILT~g--~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~----La~eL~~-~-GI~vT~I~DsA--v~~iM~~V 523 (653)
+|--|.-+. +-..+..+|+.|-+.+..+-+=+.++.=.+-|.. +++.+.+ . +|||.+-+|.+ .-.+++-+
T Consensus 16 ~~yaV~AfN~~n~e~~~avi~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~v~~~ae~~~~VPVaLHLDHg~~~e~i~~Ai 95 (347)
T PRK13399 16 NGYGVPAFNVNNMEQILAIMEAAEATDSPVILQASRGARKYAGDAMLRHMVLAAAEMYPDIPICLHQDHGNSPATCQSAI 95 (347)
T ss_pred CCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhcCCCcEEEECCCCCCHHHHHHHH
Confidence 344444442 3457778888777766554443433322333433 3455543 4 49999999986 44555545
Q ss_pred cEEEEcceeEecCCCee-----------cccchHHHHHHHhhCCCCee
Q 006256 524 TRVFLGASSVLSNGTVC-----------SRVGTACVAMVAYGFHIPVL 560 (653)
Q Consensus 524 d~VllGAdaIlaNG~V~-----------NKiGT~~lAl~Ak~~~VPVy 560 (653)
+ .|-.+|+-||+-. |--=|-.++-.||.+||.|=
T Consensus 96 ~---~GFtSVMiDgS~l~~~~~~~~~eeNI~~Trevve~Ah~~GvsVE 140 (347)
T PRK13399 96 R---SGFTSVMMDGSLLADGKTPASYDYNVDVTRRVTEMAHAVGVSVE 140 (347)
T ss_pred h---cCCCEEEEeCCCCCCCCCccCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 5 5899999999988 77788999999999998775
No 451
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=20.67 E-value=5.7e+02 Score=26.33 Aligned_cols=66 Identities=11% Similarity=0.091 Sum_probs=40.4
Q ss_pred HHHHHHHhccCCCEEEEeCCh---HHHHHHHHHHHHcCCeeEEEEeCCC-CCchHHHHHHHHHh-CCCCEEEEcc
Q 006256 444 IVKHAVTKIRDGDVLLTYGSS---SAVEMILQHAHELGKQFRVVIVDSR-PKHEGKLLLRRLVR-KGLSCTYTHI 513 (653)
Q Consensus 444 Ia~~a~~~I~dGdvILT~g~S---s~Ve~vL~~A~e~gk~f~ViV~ESR-P~~EG~~La~eL~~-~GI~vT~I~D 513 (653)
|.+.+.+...+ .+++.++.+ .++..++ .+.+.++.|+-+|+. ..-|..+++.++.+ .||++.++.-
T Consensus 31 ~i~~a~~~~~~-~i~vs~SGGKDS~vlL~L~---~~~~~~i~vvfiDTG~~~pet~e~~~~~~~~~gl~l~v~~~ 101 (241)
T PRK02090 31 RLAWALENFGG-RLALVSSFGAEDAVLLHLV---AQVDPDIPVIFLDTGYLFPETYRFIDELTERLLLNLKVYRP 101 (241)
T ss_pred HHHHHHHHcCC-CEEEEecCCHHHHHHHHHH---HhcCCCCcEEEecCCCCCHHHHHHHHHHHHHhCCCEEEECC
Confidence 45555555443 467777653 4443333 334667787766654 44468888877654 5999988854
No 452
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=20.65 E-value=1.4e+02 Score=29.71 Aligned_cols=71 Identities=15% Similarity=0.139 Sum_probs=38.7
Q ss_pred HHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcceeEecC-CCeecccchHHHHHHHhhCCCCeeeecccccc
Q 006256 495 KLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSN-GTVCSRVGTACVAMVAYGFHIPVLVCCEAYKF 568 (653)
Q Consensus 495 ~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAdaIlaN-G~V~NKiGT~~lAl~Ak~~~VPVyV~aetyKf 568 (653)
..+++.|...|++++++.+.. -+.++|.+|++--.-... -......|-...-.-+...++||+-+|--+-+
T Consensus 13 ~~~~~~l~~~g~~v~~~~~~~---~l~~~d~lilpG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PvlGiC~G~Ql 84 (199)
T PRK13181 13 RSVANALKRLGVEAVVSSDPE---EIAGADKVILPGVGAFGQAMRSLRESGLDEALKEHVEKKQPVLGICLGMQL 84 (199)
T ss_pred HHHHHHHHHCCCcEEEEcChH---HhccCCEEEECCCCCHHHHHHHHHHCChHHHHHHHHHCCCCEEEECHhHHH
Confidence 345678888899988885522 245788887742100000 00012234333323334579999988875544
No 453
>PRK06290 aspartate aminotransferase; Provisional
Probab=20.59 E-value=6.8e+02 Score=27.76 Aligned_cols=55 Identities=16% Similarity=0.051 Sum_probs=31.5
Q ss_pred ccCC-CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc
Q 006256 452 IRDG-DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (653)
Q Consensus 452 I~dG-dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~ 512 (653)
+... ++++|.|...++..++......|. .|++.+ |.+.+.... +...|.++..+.
T Consensus 103 ~~~~~~I~it~Gs~~al~~~~~~~~~~gd--~Vlv~~--P~y~~~~~~--~~~~g~~v~~v~ 158 (410)
T PRK06290 103 IDPVTEVIHSIGSKPALAMLPSCFINPGD--VTLMTV--PGYPVTGTH--TKYYGGEVYNLP 158 (410)
T ss_pred CCCcceEEEccCHHHHHHHHHHHhCCCCC--EEEEeC--CCCccHHHH--HHHcCCEEEEEe
Confidence 4433 688998888888555544433332 444433 666654433 334677776664
No 454
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=20.55 E-value=8.6e+02 Score=24.31 Aligned_cols=109 Identities=22% Similarity=0.227 Sum_probs=62.1
Q ss_pred HHHHHHHhccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCC----------------chHH----HHHHHHHh
Q 006256 444 IVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPK----------------HEGK----LLLRRLVR 503 (653)
Q Consensus 444 Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~----------------~EG~----~La~eL~~ 503 (653)
++..+.++|.+ ..|+..|.+.+-..+++.....|-. +++++|..-. .-|+ .+++.|.+
T Consensus 9 ~G~~~q~~L~~-s~VlviG~gglGsevak~L~~~GVg-~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~ 86 (198)
T cd01485 9 WGDEAQNKLRS-AKVLIIGAGALGAEIAKNLVLAGID-SITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQE 86 (198)
T ss_pred cCHHHHHHHhh-CcEEEECCCHHHHHHHHHHHHcCCC-EEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHH
Confidence 45556666654 7788888887555666666666765 3333332211 0121 12345555
Q ss_pred C--CCCEEEEcc------chHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeec
Q 006256 504 K--GLSCTYTHI------NAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (653)
Q Consensus 504 ~--GI~vT~I~D------sAv~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~a 563 (653)
. .+.++.+.. .-...++++.|.||...|. ..--..+.-+|+++++||+.+.
T Consensus 87 lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~---------~~~~~~ln~~c~~~~ip~i~~~ 145 (198)
T cd01485 87 LNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEEN---------YERTAKVNDVCRKHHIPFISCA 145 (198)
T ss_pred HCCCCEEEEEecccccchhhHHHHHhCCCEEEECCCC---------HHHHHHHHHHHHHcCCCEEEEE
Confidence 4 455555432 2234556788887755442 2223446678999999998864
No 455
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=20.48 E-value=1.7e+02 Score=30.92 Aligned_cols=58 Identities=12% Similarity=0.080 Sum_probs=39.5
Q ss_pred ccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc
Q 006256 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI 513 (653)
Q Consensus 452 I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D 513 (653)
+..|++|.+.+.+..-..+=..|+..|.+++|++.++-|.. ....+...|-.++++..
T Consensus 54 ~~~g~~vv~aSsGN~g~alA~~a~~~Gl~~~i~vp~~~~~~----k~~~~~~~GA~v~~~~~ 111 (298)
T TIGR01139 54 LKPGKTIVEPTSGNTGIALAMVAAARGYKLILTMPETMSIE----RRKLLKAYGAELVLTPG 111 (298)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHHcCCeEEEEeCCccCHH----HHHHHHHcCCEEEEECC
Confidence 45667788887776544545566667888888888876532 24556778888887754
No 456
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=20.47 E-value=5.7e+02 Score=27.94 Aligned_cols=94 Identities=22% Similarity=0.356 Sum_probs=49.3
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc----------chHHHHh-hh
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI----------NAISYII-HE 522 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D----------sAv~~iM-~~ 522 (653)
..++|+|-|.+.++..++....+.|. +|++. +|.+.+... .+...|+.+.++.. ..+-..+ ++
T Consensus 96 ~~~ii~t~G~t~al~~~~~~l~~~gd--~Vlv~--~p~y~~~~~--~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 169 (403)
T TIGR01265 96 ADDVVLTSGCSQAIEICIEALANPGA--NILVP--RPGFPLYDT--RAAFSGLEVRLYDLLPEKDWEIDLDGLEALADEK 169 (403)
T ss_pred HHHEEEecChHHHHHHHHHHhCCCCC--EEEEe--CCCchhHHH--HHHHcCCEEEEecCCcccCCccCHHHHHHHhCcC
Confidence 34677888777777555554433343 45443 366554433 23456777766531 1111111 13
Q ss_pred ccEEEEcceeEecCCCeecccchH-------HHHHHHhhCCCCeee
Q 006256 523 VTRVFLGASSVLSNGTVCSRVGTA-------CVAMVAYGFHIPVLV 561 (653)
Q Consensus 523 Vd~VllGAdaIlaNG~V~NKiGT~-------~lAl~Ak~~~VPVyV 561 (653)
..+|++ .|- -|..|+. .++-+|+++++++++
T Consensus 170 ~~~v~i------~~p--~NPtG~~~~~~~~~~i~~~a~~~~~~ii~ 207 (403)
T TIGR01265 170 TVAIVV------INP--SNPCGSVFSRDHLQKIAEVARKLGIPIIA 207 (403)
T ss_pred ccEEEE------ecC--CCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 344433 222 3666654 355678888987765
No 457
>TIGR01694 MTAP 5'-deoxy-5'-methylthioadenosine phosphorylase. In between the trusted and noise cutoffs are: 1) several archaeal sequences which appear to contain several residues characteristic of phosphorylases which act on guanosine or inosine (according to the crystal structure of MTAP and alignments). In any case, these residues are not conserved. 2) sequences from Mycobacterium tuberculosis and Streptomyces coelicolor which have better, although not perfect retention of the active site residues, but considering the general observation that bacteria utilize the MTA/SAH nucleotidase enzyme and a kinase to do this reaction, these have been excluded pending stronger evidence of their function, and 3) a sequence from Drosophila which appears to be a recent divergence (long branch in neighbor-joining trees) and lacks some of the conserved active site residues.
Probab=20.42 E-value=4.6e+02 Score=27.02 Aligned_cols=22 Identities=9% Similarity=-0.057 Sum_probs=18.5
Q ss_pred cchHHHHHHHhhCCCCeeeecc
Q 006256 543 VGTACVAMVAYGFHIPVLVCCE 564 (653)
Q Consensus 543 iGT~~lAl~Ak~~~VPVyV~ae 564 (653)
.=++.++.+|+++|+|+.+++-
T Consensus 181 ME~aa~~~vA~~~gv~~~~i~~ 202 (241)
T TIGR01694 181 MTGVPEAVLARELELCYATLAL 202 (241)
T ss_pred ccHHHHHHHHHHCCCCEEEEEE
Confidence 3467899999999999998864
No 458
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=20.42 E-value=1.7e+02 Score=29.19 Aligned_cols=53 Identities=26% Similarity=0.396 Sum_probs=39.9
Q ss_pred HhccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCC
Q 006256 450 TKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGL 506 (653)
Q Consensus 450 ~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI 506 (653)
+.|++-|.|+-|+-+-....+|+ .||.+-|++-|+-=.+.-.+||..|.+.|.
T Consensus 76 e~I~~AdlVIsHAGaGS~letL~----l~KPlivVvNd~LMDNHQ~ELA~qL~~egy 128 (170)
T KOG3349|consen 76 EDIRSADLVISHAGAGSCLETLR----LGKPLIVVVNDSLMDNHQLELAKQLAEEGY 128 (170)
T ss_pred HHHhhccEEEecCCcchHHHHHH----cCCCEEEEeChHhhhhHHHHHHHHHHhcCc
Confidence 34556677778865443334443 589999999999888888899999999985
No 459
>PRK07682 hypothetical protein; Validated
Probab=20.42 E-value=7.2e+02 Score=26.69 Aligned_cols=51 Identities=22% Similarity=0.283 Sum_probs=29.1
Q ss_pred CCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEE
Q 006256 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT 511 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I 511 (653)
.++++|.|.+.++..+++...+.| -+|++. .|.+.+...+ +...|..+..+
T Consensus 82 ~~i~~t~G~~~al~~~~~~l~~~g--d~vl~~--~p~y~~~~~~--~~~~g~~~~~~ 132 (378)
T PRK07682 82 DEIIVTVGASQALDVAMRAIINPG--DEVLIV--EPSFVSYAPL--VTLAGGVPVPV 132 (378)
T ss_pred CcEEEeCChHHHHHHHHHHhCCCC--CEEEEe--CCCchhhHHH--HHHcCCEEEEe
Confidence 468889888888866665554333 345543 4655544333 23346665555
No 460
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=20.42 E-value=4.4e+02 Score=29.61 Aligned_cols=92 Identities=14% Similarity=0.052 Sum_probs=52.3
Q ss_pred CCCEEEEeCChHHHHH-HHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEccee
Q 006256 454 DGDVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASS 532 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~-vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAda 532 (653)
++..|+.+|-+..=.. +.+.+++ ...+|++.|.++.. ...+|.+.||.+.+ ..... .+..+|.||++..-
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~--~G~~V~~~D~~~~~----~~~~l~~~gi~~~~--~~~~~-~~~~~d~vv~spgi 76 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLN--LGYKVSGSDLKESA----VTQRLLELGAIIFI--GHDAE-NIKDADVVVYSSAI 76 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHh--CCCeEEEECCCCCh----HHHHHHHCCCEEeC--CCCHH-HCCCCCEEEECCCC
Confidence 4557888876532222 2333443 34679999998764 23458888988765 22222 23568888765421
Q ss_pred EecCCCeecccchHHHHHHHhhCCCCeeeecc
Q 006256 533 VLSNGTVCSRVGTACVAMVAYGFHIPVLVCCE 564 (653)
Q Consensus 533 IlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~ae 564 (653)
=. +...-..|+++++||+--.|
T Consensus 77 ~~----------~~~~~~~a~~~~i~i~~~~e 98 (461)
T PRK00421 77 PD----------DNPELVAARELGIPVVRRAE 98 (461)
T ss_pred CC----------CCHHHHHHHHCCCcEEeHHH
Confidence 11 22344566777777774333
No 461
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=20.39 E-value=3.6e+02 Score=26.92 Aligned_cols=37 Identities=11% Similarity=-0.001 Sum_probs=24.1
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeeccc
Q 006256 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (653)
Q Consensus 522 ~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~aet 565 (653)
+=|.+|+ |...|. .--+..++-.||.+|+|++.++..
T Consensus 111 ~~Dv~I~----iS~SG~---t~~~i~~~~~ak~~g~~iI~iT~~ 147 (192)
T PRK00414 111 EGDVLLG----ISTSGN---SGNIIKAIEAARAKGMKVITLTGK 147 (192)
T ss_pred CCCEEEE----EeCCCC---CHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3455553 334442 233456777899999999998864
No 462
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=20.30 E-value=8.2e+02 Score=26.81 Aligned_cols=97 Identities=20% Similarity=0.193 Sum_probs=48.2
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHH-HHH-HHhCCCCEEEEccc-hHHHHhh-hccEEEEcce
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-LRR-LVRKGLSCTYTHIN-AISYIIH-EVTRVFLGAS 531 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~L-a~e-L~~~GI~vT~I~Ds-Av~~iM~-~Vd~VllGAd 531 (653)
.+|+|-|...++..+| .+.+.|. +|++. ++.+.|... ... +...++.+++..|- .+...+. +..+|++..
T Consensus 71 ~~v~~~sG~aAi~~~l-~~l~~GD--~VI~~--~~~yg~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~TklV~les- 144 (364)
T PRK07269 71 YALATSSGMSAIVLAF-SVFPVGS--KVVAV--RDLYGGSFRWFNQQEKEGRFHFTYANTEEELIAAIEEDTDIVYIET- 144 (364)
T ss_pred eEEEeCCHHHHHHHHH-HHhCCCC--EEEEe--cCCcCchHHHHHHHHhcCcEEEEecCCHHHHHHhcCcCceEEEEEC-
Confidence 3455555555665555 4544443 56664 455555432 222 23336777766542 3333332 344443321
Q ss_pred eEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 532 SVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 532 aIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
-.-..|.+. --..++-+|+.++++|+|
T Consensus 145 P~NPtg~~~---di~~I~~la~~~gi~vvv 171 (364)
T PRK07269 145 PTNPLMVEF---DIEKVAKLAHAKGAKVIV 171 (364)
T ss_pred CCCCCCeee---CHHHHHHHHHHcCCEEEE
Confidence 111123222 344567788999998887
No 463
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=20.29 E-value=7.6e+02 Score=29.45 Aligned_cols=77 Identities=18% Similarity=0.301 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHhccCCC-----EEEEeC--ChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH--HHHHhCCCCEEE
Q 006256 440 ADRVIVKHAVTKIRDGD-----VLLTYG--SSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL--RRLVRKGLSCTY 510 (653)
Q Consensus 440 a~~~Ia~~a~~~I~dGd-----vILT~g--~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La--~eL~~~GI~vT~ 510 (653)
-.++|.+-..+...++. +||..| ++..|.+.|+.|.+..++.++|++|--|.- ..++ +.....+=.||+
T Consensus 348 Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNA--ivtL~~~n~~~W~~~Vti 425 (649)
T KOG0822|consen 348 YQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNA--IVTLQNRNFECWDNRVTI 425 (649)
T ss_pred HHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcch--hhhhhhhchhhhcCeeEE
Confidence 34456666667776653 466665 567999999999988899999999999863 1111 334445667888
Q ss_pred EccchHHH
Q 006256 511 THINAISY 518 (653)
Q Consensus 511 I~DsAv~~ 518 (653)
|.--|=.+
T Consensus 426 i~~DMR~w 433 (649)
T KOG0822|consen 426 ISSDMRKW 433 (649)
T ss_pred Eecccccc
Confidence 86444333
No 464
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=20.25 E-value=3.7e+02 Score=26.08 Aligned_cols=90 Identities=16% Similarity=0.140 Sum_probs=48.6
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcceeE
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSV 533 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAdaI 533 (653)
.|..||..|.+.+-...++...+.|..++|| + |.. ..+|.+.+ .+++....--..-+...|.||...|-
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VI---s-p~~-----~~~l~~l~-~i~~~~~~~~~~dl~~a~lViaaT~d- 80 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVV---S-PEI-----CKEMKELP-YITWKQKTFSNDDIKDAHLIYAATNQ- 80 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEE---c-Ccc-----CHHHHhcc-CcEEEecccChhcCCCceEEEECCCC-
Confidence 6889999999987666666666667766655 2 322 22222222 12232211111123455666554322
Q ss_pred ecCCCeecccchHHHHHHHhhCCCCeeeec
Q 006256 534 LSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (653)
Q Consensus 534 laNG~V~NKiGT~~lAl~Ak~~~VPVyV~a 563 (653)
.-+| ..++.+|+.+ ++|.++.
T Consensus 81 ----~e~N----~~i~~~a~~~-~~vn~~d 101 (157)
T PRK06719 81 ----HAVN----MMVKQAAHDF-QWVNVVS 101 (157)
T ss_pred ----HHHH----HHHHHHHHHC-CcEEECC
Confidence 2233 5677788874 6777654
No 465
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=20.20 E-value=6.6e+02 Score=28.56 Aligned_cols=91 Identities=15% Similarity=0.059 Sum_probs=54.0
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcceeE
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSV 533 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAdaI 533 (653)
++..|+.+|.+.+=..+.+.+++.|. .|++.|..+. ...+.|.+.||.+..-... .. .+...|.||+..- |
T Consensus 14 ~~~~v~v~G~G~sG~a~a~~L~~~G~--~V~~~D~~~~----~~~~~l~~~gi~~~~~~~~-~~-~~~~~d~vV~Spg-i 84 (473)
T PRK00141 14 LSGRVLVAGAGVSGRGIAAMLSELGC--DVVVADDNET----ARHKLIEVTGVADISTAEA-SD-QLDSFSLVVTSPG-W 84 (473)
T ss_pred cCCeEEEEccCHHHHHHHHHHHHCCC--EEEEECCChH----HHHHHHHhcCcEEEeCCCc-hh-HhcCCCEEEeCCC-C
Confidence 46679999987654466666666665 7888886542 1233345568877543222 12 2356787766431 1
Q ss_pred ecCCCeecccchHHHHHHHhhCCCCeeee
Q 006256 534 LSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (653)
Q Consensus 534 laNG~V~NKiGT~~lAl~Ak~~~VPVyV~ 562 (653)
- =+...-..|+..++|++-=
T Consensus 85 ~---------~~~p~~~~a~~~gi~v~~~ 104 (473)
T PRK00141 85 R---------PDSPLLVDAQSQGLEVIGD 104 (473)
T ss_pred C---------CCCHHHHHHHHCCCceeeH
Confidence 1 1334556777888888743
No 466
>PRK14058 acetylglutamate/acetylaminoadipate kinase; Provisional
Probab=20.16 E-value=5.4e+02 Score=26.98 Aligned_cols=46 Identities=13% Similarity=0.170 Sum_probs=28.1
Q ss_pred HHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 516 ISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 516 v~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
+..++..=..+|+....+..+|.++|--+=...+++|...+.--++
T Consensus 142 i~~ll~~g~iPVi~~~~~~~~g~~~~i~~D~~A~~lA~~l~A~~li 187 (268)
T PRK14058 142 LKLLLKAGYLPVVAPPALSEEGEPLNVDGDRAAAAIAGALKAEALV 187 (268)
T ss_pred HHHHHHCCCEEEEeCceECCCCcEEecCHHHHHHHHHHHcCCCEEE
Confidence 3334444345666556655677777665666667788888776443
No 467
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=20.15 E-value=1.6e+02 Score=32.52 Aligned_cols=90 Identities=17% Similarity=0.274 Sum_probs=55.0
Q ss_pred HHHHHHhccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeC-CCCCchHH-----HHHHHHHhCCCCEEEEccchHHH
Q 006256 445 VKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVD-SRPKHEGK-----LLLRRLVRKGLSCTYTHINAISY 518 (653)
Q Consensus 445 a~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~E-SRP~~EG~-----~La~eL~~~GI~vT~I~DsAv~~ 518 (653)
.+.+.+++.+|..+|.||.-..++ -+.+.+-|. +-|-- ..|...|+ ...+.+.+. .++.+|+|..++.
T Consensus 187 v~aa~~L~~~Gf~v~~yc~~d~~~--a~~l~~~g~---~avmPl~~pIGsg~gv~~p~~i~~~~e~-~~vpVivdAGIg~ 260 (326)
T PRK11840 187 LKATEILVKEGFQVMVYCSDDPIA--AKRLEDAGA---VAVMPLGAPIGSGLGIQNPYTIRLIVEG-ATVPVLVDAGVGT 260 (326)
T ss_pred HHHHHHHHHCCCEEEEEeCCCHHH--HHHHHhcCC---EEEeeccccccCCCCCCCHHHHHHHHHc-CCCcEEEeCCCCC
Confidence 344556778999999999877552 233333344 22222 44444443 334444444 5678888887765
Q ss_pred HhhhccEEEEcceeEecCCCee
Q 006256 519 IIHEVTRVFLGASSVLSNGTVC 540 (653)
Q Consensus 519 iM~~Vd~VllGAdaIlaNG~V~ 540 (653)
-=.-....=+|||+|+-|=+++
T Consensus 261 ~sda~~AmelGadgVL~nSaIa 282 (326)
T PRK11840 261 ASDAAVAMELGCDGVLMNTAIA 282 (326)
T ss_pred HHHHHHHHHcCCCEEEEcceec
Confidence 5444455568999999997665
No 468
>PLN02512 acetylglutamate kinase
Probab=20.14 E-value=6.4e+02 Score=27.22 Aligned_cols=105 Identities=12% Similarity=0.155 Sum_probs=59.4
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCe----eEEEEeCCCCC-------chHHHHHHHHHhCCCCEEEEcc-----------
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQ----FRVVIVDSRPK-------HEGKLLLRRLVRKGLSCTYTHI----------- 513 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~----f~ViV~ESRP~-------~EG~~La~eL~~~GI~vT~I~D----------- 513 (653)
..||+||.++.+...+.... -... ++|.=.++.+. .=-.+++..|.+.|+++.-++-
T Consensus 81 ~iVlVHGgG~~i~~~~~~~g-i~~~~~~G~rvT~~~~lei~~~~l~g~ln~~lv~~L~~~Gv~av~l~g~d~~~i~a~~~ 159 (309)
T PLN02512 81 RPVLVHGGGPEINSWLKKVG-IEPQFKNGLRVTDAETMEVVEMVLVGKVNKSLVSLINKAGGTAVGLSGKDGRLLRARPS 159 (309)
T ss_pred CEEEEECCcHHHHHHHHHcC-CCCcCCCCCcCCCHHHHHHHHHHHhhHHHHHHHHHHHHcCCCeEEeehhhCCEEEEEEc
Confidence 58999999987766554331 1111 22111111110 0112356788899998877742
Q ss_pred -----------------chHHHHhhhccEEEEcceeEecCCCeecccchHHHH-HHHhhCCCCeeee
Q 006256 514 -----------------NAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVA-MVAYGFHIPVLVC 562 (653)
Q Consensus 514 -----------------sAv~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lA-l~Ak~~~VPVyV~ 562 (653)
..+..++..=...|+...++-.+|..+| +++..+| .+|+..+.--+++
T Consensus 160 ~~~~~~~~~G~i~~v~~~~i~~lL~~g~IPVi~~~~~d~~g~~~~-i~~D~~A~~lA~~L~Ad~li~ 225 (309)
T PLN02512 160 PNSADLGFVGEVTRVDPTVLRPLVDDGHIPVIATVAADEDGQAYN-INADTAAGEIAAALGAEKLIL 225 (309)
T ss_pred CcCccccccceeeecCHHHHHHHHhCCCEEEEeCceECCCCCEec-cCHHHHHHHHHHHcCCCEEEE
Confidence 2233334443456665567778888888 4555554 6899998754443
No 469
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=20.02 E-value=1.4e+03 Score=26.38 Aligned_cols=99 Identities=11% Similarity=0.181 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH----HHHHhC--CCCEEEE--ccchHHHHhh---hccEEEEcceeEe
Q 006256 466 AVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL----RRLVRK--GLSCTYT--HINAISYIIH---EVTRVFLGASSVL 534 (653)
Q Consensus 466 ~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La----~eL~~~--GI~vT~I--~DsAv~~iM~---~Vd~VllGAdaIl 534 (653)
.++..+.-+..+..+--+||-.|.=.+ -.+|| ..|.+. |++|.+. .+..+..++. ++|.|++|+-++
T Consensus 238 ~l~~Y~~~~~~~~~~kv~IvY~S~~Gn-Te~mA~~ia~gl~~~g~gv~v~~~~v~~~~~~~i~~~~~~ad~vilGspT~- 315 (479)
T PRK05452 238 IVELYLKWAADYQEDRITIFYDTMSNN-TRMMADAIAQGIAEVDPRVAVKIFNVARSDKNEILTNVFRSKGVLVGSSTM- 315 (479)
T ss_pred HHHHHHHHhhccCcCcEEEEEECCccH-HHHHHHHHHHHHHhhCCCceEEEEECCCCCHHHHHhHHhhCCEEEEECCcc-
Confidence 344444444432222234455555443 33444 556655 6777665 3445666665 599999999887
Q ss_pred cCCCeecccchHHHHHHHhhCCCCeeeeccccc
Q 006256 535 SNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYK 567 (653)
Q Consensus 535 aNG~V~NKiGT~~lAl~Ak~~~VPVyV~aetyK 567 (653)
||+..-.+-...--+.....+-..+.+..+|-
T Consensus 316 -~~~~~p~~~~fl~~l~~~~l~gK~~~vFGSyg 347 (479)
T PRK05452 316 -NNVMMPKIAGLLEEITGLRFRNKRASAFGSHG 347 (479)
T ss_pred -CCcchHHHHHHHHHhhccCcCCCEEEEEECCC
Confidence 56666655444444444433333444445553
Done!