Query 006256
Match_columns 653
No_of_seqs 275 out of 1464
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 20:09:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006256.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006256hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3a11_A Translation initiation 100.0 3.4E-71 1.2E-75 587.0 29.6 313 309-648 14-327 (338)
2 2yvk_A Methylthioribose-1-phos 100.0 2.5E-71 8.7E-76 593.9 26.2 321 297-651 36-373 (374)
3 2a0u_A Initiation factor 2B; S 100.0 4.5E-70 1.5E-74 585.8 30.5 314 298-638 26-369 (383)
4 1t9k_A Probable methylthioribo 100.0 2.3E-70 7.9E-75 581.9 25.9 311 297-644 14-341 (347)
5 1t5o_A EIF2BD, translation ini 100.0 1.3E-69 4.6E-74 576.8 28.0 310 300-645 12-338 (351)
6 1vb5_A Translation initiation 100.0 4.4E-63 1.5E-67 511.9 25.4 274 328-640 2-275 (276)
7 3ecs_A Translation initiation 100.0 1.2E-62 4E-67 516.5 23.2 283 349-648 21-306 (315)
8 1w2w_B 5-methylthioribose-1-ph 100.0 6.3E-48 2.1E-52 379.6 7.6 163 478-640 2-183 (191)
9 1w2w_A 5-methylthioribose-1-ph 99.9 8.5E-23 2.9E-27 203.4 13.4 166 296-481 14-208 (211)
10 1uj6_A Ribose 5-phosphate isom 98.1 1.1E-05 3.6E-10 81.3 10.0 116 440-571 8-130 (227)
11 2f8m_A Ribose 5-phosphate isom 97.9 3E-05 1E-09 78.9 8.6 119 439-571 11-137 (244)
12 1lk5_A D-ribose-5-phosphate is 97.8 6E-05 2E-09 76.0 9.6 118 440-572 6-130 (229)
13 1m0s_A Ribose-5-phosphate isom 97.8 3.7E-05 1.3E-09 77.0 7.6 119 440-572 6-126 (219)
14 3kwm_A Ribose-5-phosphate isom 97.6 0.0001 3.5E-09 74.2 8.5 120 440-572 12-132 (224)
15 3hhe_A Ribose-5-phosphate isom 97.4 0.00031 1E-08 71.9 8.9 119 440-572 27-149 (255)
16 1xtz_A Ribose-5-phosphate isom 97.4 0.00017 5.7E-09 74.2 6.9 118 440-571 21-152 (264)
17 1o8b_A Ribose 5-phosphate isom 97.4 4E-05 1.4E-09 76.8 1.2 118 440-571 6-125 (219)
18 3l7o_A Ribose-5-phosphate isom 97.2 0.00072 2.5E-08 68.0 8.3 118 440-572 4-127 (225)
19 2pjm_A Ribose-5-phosphate isom 97.2 0.0017 5.7E-08 65.4 10.5 118 440-572 6-129 (226)
20 3uw1_A Ribose-5-phosphate isom 96.7 0.0029 9.9E-08 64.2 8.0 119 441-572 15-138 (239)
21 4gmk_A Ribose-5-phosphate isom 91.6 0.46 1.6E-05 47.8 8.3 114 440-571 7-129 (228)
22 3ixq_A Ribose-5-phosphate isom 87.6 1.2 4.1E-05 44.7 7.6 117 441-571 7-128 (226)
23 2hj0_A Putative citrate lyase, 81.4 12 0.00042 41.6 13.0 113 440-566 252-417 (519)
24 3hgm_A Universal stress protei 79.1 19 0.00065 31.1 11.1 60 499-562 77-147 (147)
25 3i6i_A Putative leucoanthocyan 78.3 5.7 0.00019 40.4 8.5 101 456-563 11-118 (346)
26 3g0t_A Putative aminotransfera 77.9 12 0.0004 38.8 10.9 104 453-561 104-220 (437)
27 3ic5_A Putative saccharopine d 77.0 19 0.00066 29.8 10.2 98 455-568 5-105 (118)
28 3s3t_A Nucleotide-binding prot 76.3 23 0.00079 30.6 10.8 59 500-562 77-145 (146)
29 1poi_B Glutaconate coenzyme A- 76.1 11 0.00037 38.3 9.7 93 441-540 8-116 (260)
30 1jeo_A MJ1247, hypothetical pr 75.6 19 0.00065 33.1 10.5 84 446-530 31-133 (180)
31 1vim_A Hypothetical protein AF 74.7 23 0.0008 33.5 11.2 83 446-528 38-139 (200)
32 1m3s_A Hypothetical protein YC 73.0 25 0.00084 32.5 10.7 83 446-528 28-129 (186)
33 1jw9_B Molybdopterin biosynthe 72.8 17 0.00057 36.1 10.0 109 444-563 21-153 (249)
34 3rrl_A Succinyl-COA:3-ketoacid 71.9 11 0.00038 37.7 8.4 22 522-543 151-172 (235)
35 3rrl_B Succinyl-COA:3-ketoacid 71.4 4.2 0.00014 40.1 5.1 94 441-541 2-111 (207)
36 2g39_A Acetyl-COA hydrolase; c 71.0 77 0.0026 35.0 15.7 95 446-542 19-144 (497)
37 4dq6_A Putative pyridoxal phos 70.3 18 0.00063 36.4 9.9 101 454-561 90-202 (391)
38 3dlo_A Universal stress protei 70.0 50 0.0017 29.5 11.8 103 457-562 27-154 (155)
39 2z08_A Universal stress protei 69.8 46 0.0016 28.5 11.1 55 504-562 73-136 (137)
40 2o8r_A Polyphosphate kinase; s 69.7 5.6 0.00019 46.0 6.3 47 464-511 384-432 (705)
41 3h14_A Aminotransferase, class 69.5 22 0.00076 36.1 10.3 102 453-561 90-199 (391)
42 3e8x_A Putative NAD-dependent 69.0 12 0.0004 35.7 7.7 98 454-566 20-132 (236)
43 3d3u_A 4-hydroxybutyrate COA-t 68.6 29 0.00099 37.5 11.5 43 524-566 307-360 (439)
44 3sho_A Transcriptional regulat 68.5 40 0.0014 31.0 11.0 37 493-529 102-138 (187)
45 3llv_A Exopolyphosphatase-rela 67.7 19 0.00067 31.5 8.3 91 455-562 6-101 (141)
46 4gx0_A TRKA domain protein; me 67.5 5.3 0.00018 44.1 5.4 107 447-564 315-441 (565)
47 1qz9_A Kynureninase; kynurenin 66.6 27 0.00092 35.7 10.3 100 455-561 89-200 (416)
48 3dqp_A Oxidoreductase YLBE; al 64.4 8.3 0.00028 36.3 5.5 100 457-565 2-106 (219)
49 1k6d_A Acetate COA-transferase 64.4 20 0.00069 35.2 8.4 42 522-569 148-193 (220)
50 3idf_A USP-like protein; unive 64.3 14 0.00049 31.8 6.6 60 499-562 73-137 (138)
51 1kmj_A Selenocysteine lyase; p 64.3 1.2E+02 0.0041 30.3 14.6 101 455-561 86-199 (406)
52 2yv1_A Succinyl-COA ligase [AD 64.2 7.2 0.00025 40.0 5.3 107 454-562 70-180 (294)
53 1x92_A APC5045, phosphoheptose 64.1 92 0.0032 28.9 13.4 37 493-529 128-167 (199)
54 1t3i_A Probable cysteine desul 62.7 1E+02 0.0035 31.1 13.7 101 455-561 91-204 (420)
55 2dr1_A PH1308 protein, 386AA l 62.5 48 0.0017 33.1 11.1 97 457-561 74-181 (386)
56 2gas_A Isoflavone reductase; N 62.5 26 0.00088 34.4 8.9 99 455-562 2-110 (307)
57 3kax_A Aminotransferase, class 62.4 24 0.00084 35.4 8.9 101 454-561 82-194 (383)
58 3c85_A Putative glutathione-re 62.0 27 0.00092 32.0 8.4 86 455-556 39-130 (183)
59 3ezs_A Aminotransferase ASPB; 61.4 47 0.0016 33.3 10.8 104 453-561 81-192 (376)
60 1oi7_A Succinyl-COA synthetase 61.4 7.5 0.00026 39.8 4.8 107 454-562 64-174 (288)
61 2w48_A Sorbitol operon regulat 61.1 10 0.00036 38.8 5.9 89 442-531 93-213 (315)
62 3qli_A Coenzyme A transferase; 61.1 14 0.00049 40.5 7.2 96 445-541 29-159 (455)
63 3etn_A Putative phosphosugar i 61.1 30 0.001 33.4 8.9 37 493-529 121-159 (220)
64 3dzz_A Putative pyridoxal 5'-p 61.0 34 0.0011 34.5 9.6 101 454-561 85-198 (391)
65 3l9w_A Glutathione-regulated p 60.8 16 0.00056 39.2 7.6 92 455-563 4-100 (413)
66 3lvm_A Cysteine desulfurase; s 60.3 75 0.0026 32.4 12.3 102 455-561 86-198 (423)
67 3tnj_A Universal stress protei 59.5 87 0.003 27.0 11.6 58 503-564 82-147 (150)
68 1jmv_A USPA, universal stress 59.4 83 0.0029 26.8 10.8 58 501-564 73-138 (141)
69 1qyd_A Pinoresinol-lariciresin 59.3 37 0.0013 33.4 9.4 102 456-562 5-114 (313)
70 4ds3_A Phosphoribosylglycinami 59.3 19 0.00063 35.5 7.0 74 457-534 11-99 (209)
71 1xr4_A Putative citrate lyase 58.8 38 0.0013 37.6 10.2 115 446-561 50-202 (509)
72 2oas_A ATOA, 4-hydroxybutyrate 58.8 12 0.0004 40.8 6.0 97 446-542 10-130 (436)
73 2yva_A DNAA initiator-associat 57.9 1.2E+02 0.004 28.0 13.1 36 493-528 124-162 (196)
74 1eg5_A Aminotransferase; PLP-d 57.7 1.4E+02 0.0049 29.5 13.6 101 455-561 62-176 (384)
75 1y8q_A Ubiquitin-like 1 activa 57.6 1.3E+02 0.0045 31.2 13.7 108 444-562 26-156 (346)
76 3fdb_A Beta C-S lyase, putativ 57.0 42 0.0014 33.6 9.5 102 453-561 80-188 (377)
77 3l8a_A METC, putative aminotra 57.0 79 0.0027 32.6 11.9 100 455-561 120-232 (421)
78 2gm3_A Unknown protein; AT3G01 56.7 36 0.0012 30.7 8.2 44 522-569 124-168 (175)
79 4eb5_A Probable cysteine desul 56.7 1.6E+02 0.0054 29.2 13.9 96 456-558 62-170 (382)
80 4gqb_A Protein arginine N-meth 56.7 14 0.00049 42.2 6.5 69 456-527 359-433 (637)
81 3f9t_A TDC, L-tyrosine decarbo 56.6 1.3E+02 0.0043 29.9 13.0 100 454-561 86-206 (397)
82 3fdx_A Putative filament prote 56.4 94 0.0032 26.5 10.8 36 522-562 106-142 (143)
83 2huf_A Alanine glyoxylate amin 56.0 62 0.0021 32.5 10.7 98 456-561 72-179 (393)
84 2hj0_A Putative citrate lyase, 55.8 54 0.0018 36.5 10.8 116 447-562 54-206 (519)
85 3tqr_A Phosphoribosylglycinami 55.7 28 0.00095 34.4 7.6 75 457-535 9-97 (215)
86 1svv_A Threonine aldolase; str 55.4 32 0.0011 34.0 8.2 101 455-561 67-182 (359)
87 2xbl_A Phosphoheptose isomeras 55.3 1.3E+02 0.0044 27.7 12.3 37 492-528 130-166 (198)
88 3ua3_A Protein arginine N-meth 54.9 43 0.0015 38.9 10.0 86 441-528 393-501 (745)
89 1x87_A Urocanase protein; stru 54.8 39 0.0013 37.6 9.1 114 374-491 211-366 (551)
90 1vjo_A Alanine--glyoxylate ami 54.7 48 0.0016 33.5 9.6 98 456-561 87-194 (393)
91 3mt0_A Uncharacterized protein 54.3 1.6E+02 0.0056 28.6 13.7 98 465-568 22-132 (290)
92 2xhz_A KDSD, YRBH, arabinose 5 54.2 75 0.0026 29.0 10.1 43 488-530 106-148 (183)
93 2nvv_A Acetyl-COA hydrolase/tr 54.0 39 0.0013 37.4 9.3 96 446-542 9-139 (506)
94 3fxa_A SIS domain protein; str 53.8 74 0.0025 29.7 10.1 37 493-529 107-143 (201)
95 3vax_A Putative uncharacterize 53.7 1.8E+02 0.0063 29.1 13.9 101 455-561 81-194 (400)
96 2dum_A Hypothetical protein PH 53.7 26 0.0009 31.3 6.7 61 500-564 86-156 (170)
97 1qyc_A Phenylcoumaran benzylic 53.7 37 0.0013 33.2 8.3 99 455-562 4-111 (308)
98 3isl_A Purine catabolism prote 53.7 1.2E+02 0.0043 30.5 12.5 98 457-562 64-172 (416)
99 2lpm_A Two-component response 53.4 18 0.00063 32.2 5.5 78 478-564 6-87 (123)
100 2i2w_A Phosphoheptose isomeras 53.4 1.4E+02 0.0049 28.2 12.2 36 493-528 146-181 (212)
101 1yaa_A Aspartate aminotransfer 53.3 83 0.0029 32.1 11.2 102 454-561 96-214 (412)
102 2yv2_A Succinyl-COA synthetase 53.2 11 0.00037 38.8 4.4 105 455-561 72-180 (297)
103 2bfw_A GLGA glycogen synthase; 53.2 50 0.0017 29.8 8.6 99 453-562 34-145 (200)
104 1xr4_A Putative citrate lyase 52.7 30 0.001 38.4 8.1 147 440-637 249-448 (509)
105 3ruf_A WBGU; rossmann fold, UD 52.6 83 0.0028 31.4 10.9 109 454-565 24-151 (351)
106 1nri_A Hypothetical protein HI 52.5 1.5E+02 0.0051 30.1 12.9 63 485-549 147-212 (306)
107 2r6j_A Eugenol synthase 1; phe 52.4 36 0.0012 33.7 8.1 96 457-562 13-113 (318)
108 2nu8_A Succinyl-COA ligase [AD 52.3 11 0.00038 38.4 4.3 106 454-561 64-173 (288)
109 3ab8_A Putative uncharacterize 52.0 71 0.0024 30.7 9.9 83 473-562 177-267 (268)
110 1c7n_A Cystalysin; transferase 51.7 62 0.0021 32.8 9.9 101 454-561 89-202 (399)
111 3kgw_A Alanine-glyoxylate amin 51.7 76 0.0026 31.6 10.4 97 457-561 77-183 (393)
112 2gn4_A FLAA1 protein, UDP-GLCN 51.5 45 0.0015 34.0 8.7 111 454-567 20-144 (344)
113 4egb_A DTDP-glucose 4,6-dehydr 51.4 25 0.00086 35.2 6.7 110 454-565 23-149 (346)
114 2fr1_A Erythromycin synthase, 51.4 66 0.0023 35.0 10.5 112 452-565 223-361 (486)
115 2yvq_A Carbamoyl-phosphate syn 51.4 61 0.0021 29.6 8.7 94 453-562 24-131 (143)
116 3lk7_A UDP-N-acetylmuramoylala 51.1 33 0.0011 36.9 8.0 92 454-560 8-100 (451)
117 2z61_A Probable aspartate amin 50.9 70 0.0024 32.1 10.0 97 454-561 89-188 (370)
118 2e7j_A SEP-tRNA:Cys-tRNA synth 50.8 1.1E+02 0.0037 30.3 11.4 96 456-561 71-182 (371)
119 1qgn_A Protein (cystathionine 50.8 86 0.0029 33.6 11.2 98 456-561 131-235 (445)
120 1wv2_A Thiazole moeity, thiazo 50.8 1.1E+02 0.0038 31.3 11.2 111 449-564 66-195 (265)
121 3cai_A Possible aminotransfera 50.6 1.1E+02 0.0036 31.0 11.4 101 455-561 87-200 (406)
122 3kcq_A Phosphoribosylglycinami 50.5 24 0.00082 34.8 6.2 74 457-534 12-95 (215)
123 2ahu_A Putative enzyme YDIF; C 50.4 1.4E+02 0.0047 33.2 13.0 43 522-564 180-227 (531)
124 1vp4_A Aminotransferase, putat 50.4 71 0.0024 33.0 10.2 102 454-561 109-226 (425)
125 1lc5_A COBD, L-threonine-O-3-p 50.4 65 0.0022 32.3 9.7 98 455-561 77-184 (364)
126 3jtx_A Aminotransferase; NP_28 50.2 49 0.0017 33.5 8.8 103 454-561 90-206 (396)
127 3cdk_A Succinyl-COA:3-ketoacid 50.0 73 0.0025 31.7 9.8 44 522-571 151-198 (241)
128 2x5d_A Probable aminotransfera 50.0 44 0.0015 34.3 8.5 100 455-561 100-210 (412)
129 3loq_A Universal stress protei 49.9 1.3E+02 0.0043 29.5 11.5 104 457-564 173-290 (294)
130 1uwk_A Urocanate hydratase; hy 49.8 39 0.0013 37.6 8.2 114 374-491 216-371 (557)
131 1lss_A TRK system potassium up 49.7 57 0.002 27.7 8.0 90 455-561 4-99 (140)
132 3dhn_A NAD-dependent epimerase 49.6 35 0.0012 31.8 7.1 100 456-565 5-112 (227)
133 3hdj_A Probable ornithine cycl 49.6 67 0.0023 33.1 9.7 87 454-546 120-215 (313)
134 2zc0_A Alanine glyoxylate tran 49.5 55 0.0019 33.3 9.1 102 454-561 98-213 (407)
135 1d2f_A MALY protein; aminotran 49.4 73 0.0025 32.2 9.9 101 454-561 87-200 (390)
136 2fp4_A Succinyl-COA ligase [GD 49.4 16 0.00054 37.8 4.9 105 455-561 72-181 (305)
137 4dik_A Flavoprotein; TM0755, e 49.0 1.3E+02 0.0045 32.1 12.2 68 496-566 285-361 (410)
138 3cis_A Uncharacterized protein 49.0 1.4E+02 0.0047 29.5 11.7 59 505-567 100-164 (309)
139 3fwz_A Inner membrane protein 49.0 65 0.0022 28.3 8.4 92 456-564 8-106 (140)
140 2bkw_A Alanine-glyoxylate amin 49.0 1.2E+02 0.004 30.3 11.3 99 455-561 60-174 (385)
141 2fkn_A Urocanate hydratase; ro 48.9 39 0.0013 37.6 7.9 114 374-491 212-367 (552)
142 3acz_A Methionine gamma-lyase; 48.9 62 0.0021 33.4 9.4 98 456-561 76-179 (389)
143 2q7w_A Aspartate aminotransfer 48.7 1.1E+02 0.0037 30.8 11.1 104 454-561 92-210 (396)
144 1mjh_A Protein (ATP-binding do 48.7 44 0.0015 29.5 7.3 61 500-564 91-159 (162)
145 3dfz_A SIRC, precorrin-2 dehyd 48.6 14 0.00048 36.6 4.2 93 454-563 30-122 (223)
146 3cwc_A Putative glycerate kina 48.6 13 0.00046 39.9 4.3 62 492-567 269-330 (383)
147 2z9v_A Aspartate aminotransfer 48.4 92 0.0031 31.3 10.5 99 455-561 60-169 (392)
148 3olq_A Universal stress protei 48.3 1.9E+02 0.0066 28.3 12.7 98 465-566 22-152 (319)
149 3c1o_A Eugenol synthase; pheny 48.0 64 0.0022 31.9 9.1 98 456-562 5-111 (321)
150 2cb1_A O-acetyl homoserine sul 47.4 59 0.002 33.7 9.1 98 456-561 73-175 (412)
151 3cvj_A Putative phosphoheptose 47.3 93 0.0032 30.1 10.0 41 488-528 118-169 (243)
152 2ord_A Acoat, acetylornithine 47.2 1.5E+02 0.0052 30.0 12.0 33 454-487 97-135 (397)
153 3ndn_A O-succinylhomoserine su 46.9 56 0.0019 34.4 8.9 97 456-561 98-201 (414)
154 3mad_A Sphingosine-1-phosphate 46.7 46 0.0016 35.7 8.3 99 458-563 164-276 (514)
155 2ctz_A O-acetyl-L-homoserine s 46.7 60 0.002 34.0 9.0 97 456-561 75-179 (421)
156 3ilh_A Two component response 46.4 66 0.0023 27.1 7.8 58 457-514 37-101 (146)
157 2g1u_A Hypothetical protein TM 46.3 65 0.0022 28.7 8.1 93 453-562 17-116 (155)
158 3qhx_A Cystathionine gamma-syn 46.3 71 0.0024 33.0 9.5 97 456-561 83-186 (392)
159 3zrp_A Serine-pyruvate aminotr 46.1 80 0.0027 31.4 9.5 97 456-561 56-162 (384)
160 2ch1_A 3-hydroxykynurenine tra 45.8 81 0.0028 31.7 9.6 98 456-561 71-178 (396)
161 2hmt_A YUAA protein; RCK, KTN, 45.8 63 0.0022 27.5 7.6 91 455-561 6-101 (144)
162 1m32_A 2-aminoethylphosphonate 45.7 94 0.0032 30.5 9.9 98 456-561 58-166 (366)
163 3k6m_A Succinyl-COA:3-ketoacid 45.5 32 0.0011 38.0 6.8 96 440-541 262-373 (481)
164 2dou_A Probable N-succinyldiam 45.4 98 0.0034 31.0 10.1 99 456-561 89-196 (376)
165 1tq8_A Hypothetical protein RV 45.4 1.1E+02 0.0037 27.5 9.5 62 499-564 88-158 (163)
166 2rfv_A Methionine gamma-lyase; 45.0 1E+02 0.0035 31.5 10.4 98 456-561 81-184 (398)
167 2okj_A Glutamate decarboxylase 44.7 1.7E+02 0.006 31.1 12.5 103 454-561 151-280 (504)
168 2wm3_A NMRA-like family domain 44.4 55 0.0019 32.1 7.9 108 455-566 5-116 (299)
169 1jkx_A GART;, phosphoribosylgl 43.9 53 0.0018 32.1 7.5 74 457-534 4-92 (212)
170 1zud_1 Adenylyltransferase THI 43.8 1.6E+02 0.0055 29.0 11.2 109 444-563 18-150 (251)
171 2yrr_A Aminotransferase, class 43.7 66 0.0023 31.5 8.4 96 456-561 54-159 (353)
172 1ajs_A Aspartate aminotransfer 43.7 1.4E+02 0.0047 30.4 11.0 104 454-561 97-221 (412)
173 2ay1_A Aroat, aromatic amino a 43.6 1.1E+02 0.0039 30.7 10.3 101 455-561 90-207 (394)
174 1tk9_A Phosphoheptose isomeras 43.5 1.9E+02 0.0065 26.2 11.4 42 487-528 119-160 (188)
175 3ftb_A Histidinol-phosphate am 42.4 65 0.0022 32.0 8.1 97 454-561 78-182 (361)
176 2aef_A Calcium-gated potassium 42.4 35 0.0012 32.7 5.9 90 455-563 9-103 (234)
177 1id1_A Putative potassium chan 42.1 1.1E+02 0.0036 27.2 8.8 97 456-564 4-106 (153)
178 3fg9_A Protein of universal st 41.9 1.4E+02 0.0049 25.9 9.6 59 500-562 87-155 (156)
179 3e48_A Putative nucleoside-dip 41.8 36 0.0012 33.2 6.0 102 457-566 2-107 (289)
180 3olq_A Universal stress protei 41.7 1.5E+02 0.0052 29.0 10.7 62 499-564 235-305 (319)
181 4ggj_A Mitochondrial cardiolip 41.2 32 0.0011 32.8 5.3 55 458-513 64-119 (196)
182 2bwn_A 5-aminolevulinate synth 40.9 2.8E+02 0.0097 27.9 12.9 72 482-561 134-213 (401)
183 3da8_A Probable 5'-phosphoribo 40.7 43 0.0015 33.0 6.3 73 458-534 17-102 (215)
184 4f4e_A Aromatic-amino-acid ami 40.6 1.4E+02 0.0047 30.7 10.5 100 456-561 119-233 (420)
185 3trj_A Phosphoheptose isomeras 40.3 2.1E+02 0.0071 27.0 11.0 37 492-528 128-167 (201)
186 1n8p_A Cystathionine gamma-lya 40.2 69 0.0024 33.2 8.2 97 456-561 72-177 (393)
187 4id9_A Short-chain dehydrogena 40.1 52 0.0018 32.8 7.0 99 454-565 18-126 (347)
188 4eu9_A Succinyl-COA:acetate co 39.9 1.2E+02 0.004 33.5 10.4 96 445-541 17-147 (514)
189 3q2o_A Phosphoribosylaminoimid 39.9 8.5 0.00029 40.2 1.1 75 451-531 10-84 (389)
190 1ek6_A UDP-galactose 4-epimera 39.9 1.4E+02 0.0046 29.7 10.1 108 456-565 3-132 (348)
191 2pln_A HP1043, response regula 39.8 96 0.0033 26.0 7.8 77 478-566 16-96 (137)
192 1elu_A L-cysteine/L-cystine C- 39.7 1.8E+02 0.0061 28.9 11.0 99 455-561 77-193 (390)
193 3ri6_A O-acetylhomoserine sulf 39.7 1.8E+02 0.006 30.9 11.4 96 458-561 100-202 (430)
194 2jl1_A Triphenylmethane reduct 39.6 72 0.0024 30.8 7.8 102 457-565 2-107 (287)
195 1e5e_A MGL, methionine gamma-l 39.6 1.7E+02 0.0058 30.2 11.1 98 456-561 79-183 (404)
196 1iay_A ACC synthase 2, 1-amino 39.5 1.1E+02 0.0037 31.5 9.6 102 453-561 107-226 (428)
197 3s2u_A UDP-N-acetylglucosamine 39.4 2E+02 0.0068 29.5 11.5 92 455-562 180-278 (365)
198 2fq6_A Cystathionine beta-lyas 39.1 60 0.0021 34.3 7.6 96 456-561 99-204 (415)
199 3nnk_A Ureidoglycine-glyoxylat 39.1 1.9E+02 0.0064 29.1 11.1 98 456-561 65-173 (411)
200 2z5l_A Tylkr1, tylactone synth 39.0 1.2E+02 0.004 33.3 10.1 112 452-565 256-391 (511)
201 3fsl_A Aromatic-amino-acid ami 38.9 2.1E+02 0.0073 28.6 11.5 100 456-561 97-211 (397)
202 3cg0_A Response regulator rece 38.8 92 0.0032 26.0 7.5 82 478-566 7-92 (140)
203 3a2b_A Serine palmitoyltransfe 38.8 2E+02 0.0067 29.0 11.2 96 456-561 105-208 (398)
204 2o1b_A Aminotransferase, class 38.7 1.1E+02 0.0036 31.5 9.3 100 455-561 110-219 (404)
205 1j32_A Aspartate aminotransfer 38.6 84 0.0029 31.7 8.4 101 454-561 90-201 (388)
206 3uwc_A Nucleotide-sugar aminot 38.4 62 0.0021 32.4 7.3 92 455-562 54-158 (374)
207 3ia7_A CALG4; glycosysltransfe 38.4 70 0.0024 32.2 7.7 23 546-568 114-136 (402)
208 1lnq_A MTHK channels, potassiu 38.4 50 0.0017 33.6 6.6 91 455-564 115-210 (336)
209 1gd9_A Aspartate aminotransfer 38.1 96 0.0033 31.2 8.7 101 454-561 86-198 (389)
210 2o0r_A RV0858C (N-succinyldiam 38.0 1.6E+02 0.0055 30.0 10.5 99 456-561 88-198 (411)
211 1mio_B Nitrogenase molybdenum 37.9 4.1E+02 0.014 28.5 14.9 94 454-563 311-410 (458)
212 3ly1_A Putative histidinol-pho 37.9 90 0.0031 30.9 8.3 98 454-561 68-178 (354)
213 3rsc_A CALG2; TDP, enediyne, s 37.7 79 0.0027 32.3 8.1 22 547-568 131-152 (415)
214 1o1y_A Conserved hypothetical 37.7 26 0.0009 34.4 4.3 86 478-564 10-101 (239)
215 1byr_A Protein (endonuclease); 37.4 1E+02 0.0036 27.1 7.9 54 458-511 32-87 (155)
216 3ec7_A Putative dehydrogenase; 37.2 2.2E+02 0.0074 29.2 11.4 112 457-572 25-154 (357)
217 1gc0_A Methionine gamma-lyase; 37.2 1.5E+02 0.005 30.4 10.1 98 456-561 82-185 (398)
218 1hdo_A Biliverdin IX beta redu 37.2 55 0.0019 29.7 6.1 104 456-566 4-112 (206)
219 3cog_A Cystathionine gamma-lya 36.8 1.2E+02 0.0043 31.4 9.6 97 456-561 84-187 (403)
220 1sb8_A WBPP; epimerase, 4-epim 36.5 1.7E+02 0.0057 29.3 10.2 110 454-565 26-153 (352)
221 3dyd_A Tyrosine aminotransfera 36.4 81 0.0028 32.7 8.0 102 453-561 117-229 (427)
222 3h2s_A Putative NADH-flavin re 35.9 53 0.0018 30.4 5.9 99 457-563 2-104 (224)
223 3t6k_A Response regulator rece 35.8 1.4E+02 0.0049 25.1 8.3 79 480-566 4-88 (136)
224 1cs1_A CGS, protein (cystathio 35.7 2.6E+02 0.009 28.2 11.6 97 456-561 69-172 (386)
225 3mt0_A Uncharacterized protein 35.6 2.3E+02 0.0078 27.5 10.8 62 500-565 207-277 (290)
226 3cis_A Uncharacterized protein 35.6 3.3E+02 0.011 26.7 12.7 57 504-564 244-306 (309)
227 2qzj_A Two-component response 35.5 1.2E+02 0.004 25.7 7.7 79 480-566 4-85 (136)
228 2zyj_A Alpha-aminodipate amino 35.5 1.1E+02 0.0036 31.2 8.6 102 454-561 91-201 (397)
229 3fwk_A FMN adenylyltransferase 35.5 3.1E+02 0.011 28.4 12.1 91 443-533 45-171 (308)
230 3nra_A Aspartate aminotransfer 35.4 91 0.0031 31.5 8.0 100 455-561 103-217 (407)
231 3gpi_A NAD-dependent epimerase 34.7 34 0.0012 33.3 4.5 49 517-565 57-109 (286)
232 3eod_A Protein HNR; response r 34.7 1.4E+02 0.0047 24.7 7.9 80 479-566 6-89 (130)
233 2h1q_A Hypothetical protein; Z 34.5 96 0.0033 31.6 7.9 89 453-571 139-227 (270)
234 3mz0_A Inositol 2-dehydrogenas 34.5 1.9E+02 0.0066 29.2 10.3 113 457-573 4-134 (344)
235 1meo_A Phosophoribosylglycinam 34.4 63 0.0021 31.5 6.3 70 457-530 4-87 (209)
236 1yiz_A Kynurenine aminotransfe 34.3 1.4E+02 0.0048 30.6 9.4 99 456-561 103-220 (429)
237 1o4s_A Aspartate aminotransfer 34.3 1.6E+02 0.0055 29.8 9.8 101 454-561 101-212 (389)
238 2zcu_A Uncharacterized oxidore 34.3 96 0.0033 29.8 7.7 99 458-565 2-104 (286)
239 1v2d_A Glutamine aminotransfer 34.3 2.1E+02 0.0072 28.6 10.5 100 455-561 79-190 (381)
240 3rht_A (gatase1)-like protein; 34.0 28 0.00094 35.3 3.8 81 481-568 5-91 (259)
241 3ke3_A Putative serine-pyruvat 33.9 3.8E+02 0.013 27.0 12.7 99 457-562 54-174 (379)
242 2wsi_A FAD synthetase; transfe 33.9 2.7E+02 0.0093 28.4 11.3 89 444-532 41-167 (306)
243 3nhm_A Response regulator; pro 33.9 1.6E+02 0.0055 24.3 8.2 56 454-514 26-86 (133)
244 4adb_A Succinylornithine trans 33.8 2.8E+02 0.0096 27.8 11.5 101 456-561 98-222 (406)
245 2r5f_A Transcriptional regulat 33.7 84 0.0029 31.4 7.3 100 444-545 47-174 (264)
246 1qg8_A Protein (spore coat pol 33.7 1.1E+02 0.0039 28.7 8.0 55 457-512 6-61 (255)
247 2dgk_A GAD-beta, GADB, glutama 33.7 2.9E+02 0.01 28.7 11.9 98 457-562 106-229 (452)
248 3npg_A Uncharacterized DUF364 33.7 85 0.0029 31.5 7.3 96 453-575 114-209 (249)
249 3nmy_A Xometc, cystathionine g 33.6 1.3E+02 0.0045 31.4 9.1 96 456-561 84-187 (400)
250 1zh2_A KDP operon transcriptio 33.5 1.4E+02 0.0049 23.9 7.7 77 481-565 2-81 (121)
251 1zgz_A Torcad operon transcrip 33.1 1.4E+02 0.0049 24.2 7.6 78 481-566 3-83 (122)
252 2z1d_A Hydrogenase expression/ 33.1 58 0.002 34.8 6.1 51 509-563 177-227 (372)
253 3auf_A Glycinamide ribonucleot 32.9 1.1E+02 0.0038 30.2 7.9 75 458-535 27-115 (229)
254 3asa_A LL-diaminopimelate amin 32.7 1E+02 0.0035 31.4 7.9 100 454-561 95-201 (400)
255 3e2y_A Kynurenine-oxoglutarate 32.7 1.2E+02 0.0042 30.6 8.5 100 455-561 86-205 (410)
256 1fc4_A 2-amino-3-ketobutyrate 32.5 2.8E+02 0.0095 27.9 11.2 96 456-561 107-212 (401)
257 1u08_A Hypothetical aminotrans 32.4 2.9E+02 0.0099 27.6 11.2 99 456-561 93-201 (386)
258 3ez1_A Aminotransferase MOCR f 32.2 1.1E+02 0.0038 31.3 8.1 105 453-561 86-212 (423)
259 3p9x_A Phosphoribosylglycinami 31.9 80 0.0027 31.0 6.6 75 457-535 6-95 (211)
260 3eh7_A 4-hydroxybutyrate COA-t 31.6 81 0.0028 34.2 7.2 95 446-541 19-138 (434)
261 4dqv_A Probable peptide synthe 31.5 1.4E+02 0.0049 31.8 9.2 112 454-565 72-214 (478)
262 1xq6_A Unknown protein; struct 31.4 1.7E+02 0.0059 27.2 8.8 106 454-565 3-133 (253)
263 1bw0_A TAT, protein (tyrosine 31.2 1.9E+02 0.0066 29.3 9.8 101 454-561 104-215 (416)
264 2ywr_A Phosphoribosylglycinami 31.1 1.9E+02 0.0066 28.0 9.2 75 458-535 6-94 (216)
265 3gk7_A 4-hydroxybutyrate COA-t 31.0 94 0.0032 33.9 7.6 97 445-542 14-135 (448)
266 4hvk_A Probable cysteine desul 30.9 3.9E+02 0.013 26.1 14.8 98 456-561 62-172 (382)
267 3hvy_A Cystathionine beta-lyas 30.8 84 0.0029 33.6 7.1 96 460-562 98-218 (427)
268 3m2p_A UDP-N-acetylglucosamine 30.7 1.7E+02 0.0059 28.6 9.0 99 456-564 3-108 (311)
269 1e6u_A GDP-fucose synthetase; 30.6 1.1E+02 0.0036 30.1 7.4 26 541-566 83-108 (321)
270 3aow_A Putative uncharacterize 30.5 1.3E+02 0.0045 31.6 8.6 102 454-561 140-255 (448)
271 3i16_A Aluminum resistance pro 30.4 98 0.0034 33.1 7.6 97 460-562 97-218 (427)
272 4gek_A TRNA (CMO5U34)-methyltr 30.4 1.4E+02 0.0049 29.3 8.3 83 441-527 57-144 (261)
273 2zay_A Response regulator rece 30.2 1.2E+02 0.0042 25.6 6.9 81 478-566 6-92 (147)
274 3frk_A QDTB; aminotransferase, 30.1 69 0.0024 32.2 6.1 94 456-561 53-156 (373)
275 2qxy_A Response regulator; reg 30.1 1E+02 0.0035 25.9 6.4 78 480-566 4-85 (142)
276 3st7_A Capsular polysaccharide 30.0 1E+02 0.0035 31.3 7.3 18 541-558 69-86 (369)
277 3ew7_A LMO0794 protein; Q8Y8U8 29.7 92 0.0031 28.6 6.4 99 457-565 2-103 (221)
278 3tqx_A 2-amino-3-ketobutyrate 29.7 2.4E+02 0.008 28.2 10.0 96 456-561 105-210 (399)
279 3nbm_A PTS system, lactose-spe 29.5 22 0.00075 31.4 1.9 55 501-564 30-86 (108)
280 3mc6_A Sphingosine-1-phosphate 29.5 1.2E+02 0.0042 31.9 8.2 100 455-561 127-241 (497)
281 2jis_A Cysteine sulfinic acid 29.4 4.2E+02 0.014 28.2 12.5 105 454-563 165-296 (515)
282 1tt5_A APPBP1, amyloid protein 29.2 4.1E+02 0.014 29.4 12.5 108 444-562 22-155 (531)
283 3osu_A 3-oxoacyl-[acyl-carrier 29.2 1.1E+02 0.0038 29.2 7.1 105 455-562 4-138 (246)
284 2o0m_A Transcriptional regulat 29.1 58 0.002 33.7 5.4 91 442-533 125-246 (345)
285 3jvi_A Protein tyrosine phosph 29.1 64 0.0022 30.0 5.1 72 457-528 6-89 (161)
286 2rjn_A Response regulator rece 29.0 1.4E+02 0.0047 25.6 7.1 80 479-566 6-89 (154)
287 3kcn_A Adenylate cyclase homol 29.0 53 0.0018 28.3 4.4 57 454-514 26-85 (151)
288 1pff_A Methionine gamma-lyase; 29.0 1.5E+02 0.0052 29.0 8.3 98 456-561 15-119 (331)
289 1gy8_A UDP-galactose 4-epimera 29.0 1.7E+02 0.0059 29.6 8.9 108 456-565 3-144 (397)
290 2ejb_A Probable aromatic acid 28.9 1.2E+02 0.004 29.2 7.1 20 469-488 19-38 (189)
291 2r2n_A Kynurenine/alpha-aminoa 28.9 2.6E+02 0.009 28.7 10.4 51 456-512 110-160 (425)
292 7aat_A Aspartate aminotransfer 28.8 2.2E+02 0.0076 28.7 9.6 55 454-512 94-151 (401)
293 3av3_A Phosphoribosylglycinami 28.7 1.4E+02 0.0047 29.0 7.7 71 457-530 7-90 (212)
294 1qkk_A DCTD, C4-dicarboxylate 28.6 1.3E+02 0.0043 25.9 6.8 79 480-566 3-85 (155)
295 3hzh_A Chemotaxis response reg 28.3 1.4E+02 0.0047 26.0 7.0 80 478-565 34-120 (157)
296 3orq_A N5-carboxyaminoimidazol 28.3 42 0.0014 35.0 4.1 71 452-532 9-83 (377)
297 3rui_A Ubiquitin-like modifier 28.2 5.4E+02 0.018 26.9 13.0 109 448-569 28-175 (340)
298 3ruy_A Ornithine aminotransfer 28.2 2.8E+02 0.0096 27.8 10.3 104 455-561 94-221 (392)
299 1g0o_A Trihydroxynaphthalene r 28.2 1.7E+02 0.0058 28.5 8.4 99 454-555 28-152 (283)
300 2a3n_A Putative glucosamine-fr 28.1 3.2E+02 0.011 28.1 10.8 36 493-528 117-152 (355)
301 2cy8_A D-phgat, D-phenylglycin 28.1 1.6E+02 0.0053 30.7 8.5 102 456-561 115-240 (453)
302 3ele_A Amino transferase; RER0 28.0 1.8E+02 0.0063 29.2 8.9 103 453-561 98-216 (398)
303 1bs0_A Protein (8-amino-7-oxon 27.9 2.7E+02 0.0094 27.7 10.1 97 456-561 101-203 (384)
304 3nzo_A UDP-N-acetylglucosamine 27.9 2E+02 0.0068 29.9 9.3 111 454-566 34-166 (399)
305 3h1g_A Chemotaxis protein CHEY 27.8 1.7E+02 0.0058 24.3 7.3 78 480-565 5-90 (129)
306 2ri0_A Glucosamine-6-phosphate 27.7 1.7E+02 0.0058 28.1 8.2 91 447-541 20-134 (234)
307 3m6m_D Sensory/regulatory prot 27.6 1.1E+02 0.0036 26.3 6.1 79 479-565 13-99 (143)
308 3f0h_A Aminotransferase; RER07 27.6 1.9E+02 0.0064 28.7 8.7 98 456-561 72-179 (376)
309 1vl0_A DTDP-4-dehydrorhamnose 27.5 92 0.0032 30.1 6.2 25 540-564 89-113 (292)
310 3lou_A Formyltetrahydrofolate 27.5 1.5E+02 0.0052 30.4 8.1 73 457-535 99-185 (292)
311 3g7q_A Valine-pyruvate aminotr 27.3 74 0.0025 32.4 5.7 107 452-561 96-218 (417)
312 1wx0_A Transaldolase; structur 27.3 2.2E+02 0.0074 28.1 8.9 49 464-515 69-120 (223)
313 3jyo_A Quinate/shikimate dehyd 27.1 2.4E+02 0.0082 28.4 9.4 72 454-527 126-199 (283)
314 3b46_A Aminotransferase BNA3; 27.0 1.3E+02 0.0043 31.5 7.6 52 455-512 119-170 (447)
315 2x4g_A Nucleoside-diphosphate- 27.0 1.4E+02 0.0049 29.4 7.7 103 456-565 14-126 (342)
316 2j48_A Two-component sensor ki 26.8 1.7E+02 0.0058 23.0 6.9 77 482-566 3-85 (119)
317 1orr_A CDP-tyvelose-2-epimeras 26.7 61 0.0021 32.1 4.9 104 457-563 3-123 (347)
318 1i4n_A Indole-3-glycerol phosp 26.6 29 0.001 35.0 2.5 101 525-644 119-222 (251)
319 4e4t_A Phosphoribosylaminoimid 26.6 55 0.0019 34.8 4.7 77 451-533 31-107 (419)
320 1xi9_A Putative transaminase; 26.6 3E+02 0.01 27.9 10.2 100 455-561 102-212 (406)
321 3ppl_A Aspartate aminotransfer 26.5 2.7E+02 0.0091 28.5 9.9 99 452-561 93-220 (427)
322 3sc6_A DTDP-4-dehydrorhamnose 26.4 48 0.0017 32.1 4.0 26 540-565 82-107 (287)
323 1v4v_A UDP-N-acetylglucosamine 26.3 3.9E+02 0.013 26.5 10.9 69 477-562 227-299 (376)
324 3kht_A Response regulator; PSI 26.3 1.7E+02 0.0059 24.6 7.2 80 479-566 4-91 (144)
325 3tcm_A Alanine aminotransferas 26.2 3.2E+02 0.011 29.1 10.8 103 453-561 156-275 (500)
326 1mvo_A PHOP response regulator 26.2 2.6E+02 0.0088 23.0 8.2 77 481-565 4-84 (136)
327 1f0k_A MURG, UDP-N-acetylgluco 26.1 3.7E+02 0.013 26.3 10.6 66 480-562 212-280 (364)
328 1smk_A Malate dehydrogenase, g 26.0 2.5E+02 0.0085 28.7 9.4 100 456-558 9-118 (326)
329 1b93_A Protein (methylglyoxal 26.0 2.6E+02 0.0089 26.1 8.7 102 455-567 12-124 (152)
330 2pb2_A Acetylornithine/succiny 25.9 4.9E+02 0.017 26.7 11.8 102 455-561 115-240 (420)
331 3rqi_A Response regulator prot 25.9 1.8E+02 0.0061 26.1 7.5 79 480-566 7-89 (184)
332 1b5p_A Protein (aspartate amin 25.9 2E+02 0.0068 29.0 8.7 100 455-561 92-202 (385)
333 3oy2_A Glycosyltransferase B73 25.8 1.1E+02 0.0038 31.0 6.7 98 455-562 184-303 (413)
334 3ffh_A Histidinol-phosphate am 25.7 1.4E+02 0.0048 29.7 7.3 98 454-561 84-192 (363)
335 3heb_A Response regulator rece 25.3 1.6E+02 0.0055 25.1 6.9 58 457-514 32-98 (152)
336 3vps_A TUNA, NAD-dependent epi 25.1 71 0.0024 31.1 5.0 26 541-566 95-120 (321)
337 3enk_A UDP-glucose 4-epimerase 25.1 2.3E+02 0.0078 27.9 8.8 109 454-565 4-129 (341)
338 3d3u_A 4-hydroxybutyrate COA-t 25.0 58 0.002 35.2 4.6 96 445-541 14-135 (439)
339 3lec_A NADB-rossmann superfami 24.9 1E+02 0.0035 30.5 6.0 78 447-528 14-96 (230)
340 3tsa_A SPNG, NDP-rhamnosyltran 24.9 1.6E+02 0.0054 29.7 7.7 20 546-565 125-144 (391)
341 2qr3_A Two-component system re 24.6 1.6E+02 0.0056 24.4 6.6 84 480-566 3-90 (140)
342 3ilh_A Two component response 24.6 2.6E+02 0.0087 23.2 7.9 82 477-566 6-102 (146)
343 3e9k_A Kynureninase; kynurenin 24.5 1.9E+02 0.0064 30.2 8.4 102 454-561 128-249 (465)
344 3rq1_A Aminotransferase class 24.5 2.4E+02 0.0082 28.7 9.0 100 456-561 104-224 (418)
345 3jzl_A Putative cystathionine 24.5 1.5E+02 0.0051 31.3 7.6 95 461-562 83-201 (409)
346 3oks_A 4-aminobutyrate transam 24.3 3.6E+02 0.012 28.2 10.5 103 456-561 124-266 (451)
347 2ydy_A Methionine adenosyltran 24.3 1.8E+02 0.006 28.4 7.7 100 455-566 2-112 (315)
348 3hv2_A Response regulator/HD d 24.3 1.4E+02 0.0048 25.6 6.2 80 479-566 13-96 (153)
349 2fnu_A Aminotransferase; prote 24.2 1.2E+02 0.0042 30.0 6.6 94 456-561 49-153 (375)
350 3eag_A UDP-N-acetylmuramate:L- 24.2 1.9E+02 0.0066 29.3 8.2 89 456-561 5-95 (326)
351 3oj0_A Glutr, glutamyl-tRNA re 24.2 1.1E+02 0.0038 26.8 5.6 68 454-529 20-87 (144)
352 3gt7_A Sensor protein; structu 24.1 2E+02 0.0068 24.8 7.3 80 479-566 6-91 (154)
353 3r0j_A Possible two component 24.1 2.2E+02 0.0075 26.9 8.1 78 479-564 22-103 (250)
354 4fzr_A SSFS6; structural genom 24.0 1.2E+02 0.0043 30.7 6.7 36 469-512 34-69 (398)
355 1fg7_A Histidinol phosphate am 23.9 1.7E+02 0.0057 29.4 7.6 53 455-512 76-128 (356)
356 3rss_A Putative uncharacterize 23.8 5.4E+02 0.019 28.2 12.2 113 440-560 35-156 (502)
357 1pjq_A CYSG, siroheme synthase 23.8 1.5E+02 0.0051 32.0 7.5 95 454-565 11-106 (457)
358 1fmc_A 7 alpha-hydroxysteroid 23.8 4.4E+02 0.015 24.5 10.3 107 454-564 10-145 (255)
359 3r5x_A D-alanine--D-alanine li 23.7 74 0.0025 31.4 4.8 39 494-532 24-65 (307)
360 3mm4_A Histidine kinase homolo 23.7 2.4E+02 0.0081 26.0 8.1 78 479-564 60-159 (206)
361 3ip3_A Oxidoreductase, putativ 23.6 1.3E+02 0.0043 30.6 6.6 113 457-572 4-135 (337)
362 3rft_A Uronate dehydrogenase; 23.5 1.2E+02 0.004 29.4 6.2 98 455-565 3-111 (267)
363 1omo_A Alanine dehydrogenase; 23.4 3.6E+02 0.012 27.5 10.0 74 453-531 123-196 (322)
364 2r25_B Osmosensing histidine p 23.4 2.6E+02 0.009 23.3 7.8 57 457-513 29-89 (133)
365 2hq1_A Glucose/ribitol dehydro 23.3 3.1E+02 0.011 25.6 9.0 75 454-530 4-91 (247)
366 2w8t_A SPT, serine palmitoyltr 23.3 4.9E+02 0.017 26.6 11.3 95 456-561 126-229 (427)
367 1vef_A Acetylornithine/acetyl- 23.3 4.2E+02 0.014 26.5 10.5 100 455-561 105-224 (395)
368 2oga_A Transaminase; PLP-depen 23.3 2.9E+02 0.01 28.0 9.4 93 456-561 80-183 (399)
369 3lab_A Putative KDPG (2-keto-3 23.2 1.9E+02 0.0065 28.6 7.5 67 485-561 18-90 (217)
370 3f6p_A Transcriptional regulat 23.2 2.1E+02 0.0073 23.3 7.0 76 482-565 4-82 (120)
371 1iz0_A Quinone oxidoreductase; 23.2 2.3E+02 0.008 27.9 8.4 53 452-511 123-176 (302)
372 2egx_A Putative acetylglutamat 23.2 5.5E+02 0.019 25.3 12.3 47 516-562 143-189 (269)
373 1ja9_A 4HNR, 1,3,6,8-tetrahydr 23.1 1.6E+02 0.0055 28.1 7.0 99 454-555 20-144 (274)
374 4dad_A Putative pilus assembly 23.1 59 0.002 27.7 3.4 81 478-566 18-105 (146)
375 3slg_A PBGP3 protein; structur 23.1 65 0.0022 32.5 4.3 104 455-564 24-141 (372)
376 3s1x_A Probable transaldolase; 22.9 4.2E+02 0.014 26.2 10.0 50 464-516 63-115 (223)
377 3n0v_A Formyltetrahydrofolate 22.9 1.9E+02 0.0064 29.6 7.7 73 457-535 94-180 (286)
378 2iss_D Glutamine amidotransfer 22.7 94 0.0032 29.4 5.1 82 478-568 18-103 (208)
379 1qo0_D AMIR; binding protein, 22.5 49 0.0017 30.1 3.0 78 479-566 11-89 (196)
380 3ps9_A TRNA 5-methylaminomethy 22.4 1.6E+02 0.0056 32.8 7.8 66 446-513 203-303 (676)
381 2qbu_A Precorrin-2 methyltrans 22.4 2.2E+02 0.0076 27.1 7.8 49 472-521 88-139 (232)
382 3l4e_A Uncharacterized peptida 22.4 93 0.0032 30.1 5.1 106 458-563 5-120 (206)
383 3ab8_A Putative uncharacterize 22.4 2.3E+02 0.008 26.9 8.0 64 501-567 83-152 (268)
384 3two_A Mannitol dehydrogenase; 22.3 1.3E+02 0.0044 30.5 6.4 53 451-510 173-225 (348)
385 3i42_A Response regulator rece 22.2 2.1E+02 0.0073 23.3 6.8 79 480-566 3-87 (127)
386 3kr9_A SAM-dependent methyltra 22.1 1.4E+02 0.0047 29.4 6.3 78 447-528 8-90 (225)
387 1qv9_A F420-dependent methylen 22.0 2.4E+02 0.0083 28.7 7.9 49 466-515 52-101 (283)
388 3fbg_A Putative arginate lyase 21.9 2.6E+02 0.009 28.2 8.7 53 454-513 150-203 (346)
389 3op7_A Aminotransferase class 21.9 1.8E+02 0.006 29.1 7.2 100 455-561 82-192 (375)
390 3sho_A Transcriptional regulat 21.9 4.4E+02 0.015 23.7 11.0 90 445-565 29-123 (187)
391 2gb3_A Aspartate aminotransfer 21.8 1.3E+02 0.0044 30.8 6.3 100 455-561 103-212 (409)
392 3lte_A Response regulator; str 21.8 3.3E+02 0.011 22.2 8.1 52 479-531 5-59 (132)
393 3mje_A AMPHB; rossmann fold, o 21.8 3.4E+02 0.012 29.7 10.0 109 456-565 240-375 (496)
394 4hc4_A Protein arginine N-meth 21.8 1.3E+02 0.0045 31.8 6.5 68 454-527 83-154 (376)
395 4dzr_A Protein-(glutamine-N5) 21.8 96 0.0033 28.1 4.8 72 453-528 29-107 (215)
396 3grc_A Sensor protein, kinase; 21.8 2.7E+02 0.0091 23.1 7.4 80 479-566 5-90 (140)
397 4gud_A Imidazole glycerol phos 21.7 50 0.0017 31.2 3.0 75 482-566 4-82 (211)
398 1s8n_A Putative antiterminator 21.7 2.8E+02 0.0095 25.1 8.1 80 479-566 12-95 (205)
399 1mb3_A Cell division response 21.6 3.2E+02 0.011 22.0 8.0 76 482-565 3-84 (124)
400 2a9v_A GMP synthase; structura 21.6 88 0.003 30.0 4.7 81 479-564 12-93 (212)
401 3r5e_A Transaldolase; pentose 21.5 1.6E+02 0.0053 31.5 6.9 66 452-520 100-172 (360)
402 1eq2_A ADP-L-glycero-D-mannohe 21.5 2.2E+02 0.0074 27.5 7.6 103 458-564 2-116 (310)
403 3cnb_A DNA-binding response re 21.5 2.1E+02 0.0071 23.7 6.7 80 479-566 7-94 (143)
404 4b4o_A Epimerase family protei 21.4 1.3E+02 0.0045 29.3 6.0 19 541-559 82-100 (298)
405 1xdp_A Polyphosphate kinase; P 21.4 1.7E+02 0.0059 33.6 7.7 42 469-511 383-427 (687)
406 3jte_A Response regulator rece 21.3 78 0.0027 26.7 3.9 56 455-513 27-85 (143)
407 2r85_A PURP protein PF1517; AT 21.3 1.5E+02 0.0051 29.3 6.5 30 457-489 4-33 (334)
408 3ffr_A Phosphoserine aminotran 21.2 1.7E+02 0.0059 28.6 6.9 96 456-562 63-167 (362)
409 1jbe_A Chemotaxis protein CHEY 21.2 3.1E+02 0.011 22.2 7.6 79 479-565 3-88 (128)
410 3bh0_A DNAB-like replicative h 21.1 4.9E+02 0.017 26.1 10.5 22 547-568 212-233 (315)
411 5nul_A Flavodoxin; electron tr 21.1 1.4E+02 0.0049 25.7 5.7 64 498-563 20-86 (138)
412 3dr4_A Putative perosamine syn 21.1 1.9E+02 0.0066 29.1 7.4 89 456-561 73-176 (391)
413 1yio_A Response regulatory pro 21.0 2.5E+02 0.0086 25.4 7.6 79 480-566 4-86 (208)
414 2jba_A Phosphate regulon trans 21.0 2.5E+02 0.0084 22.8 6.9 77 481-565 3-85 (127)
415 2aeu_A Hypothetical protein MJ 21.0 3.4E+02 0.012 27.5 9.4 93 455-563 77-179 (374)
416 4gsl_A Ubiquitin-like modifier 21.0 7.5E+02 0.026 28.1 12.7 106 447-563 319-463 (615)
417 4hv4_A UDP-N-acetylmuramate--L 21.0 2E+02 0.0068 31.2 7.9 89 454-561 21-110 (494)
418 3l5o_A Uncharacterized protein 20.9 2.1E+02 0.0073 29.1 7.6 88 454-571 140-227 (270)
419 4da9_A Short-chain dehydrogena 20.9 3.5E+02 0.012 26.4 9.1 76 454-531 28-116 (280)
420 2ggs_A 273AA long hypothetical 20.9 90 0.0031 29.7 4.6 97 457-565 2-108 (273)
421 3awd_A GOX2181, putative polyo 20.8 5E+02 0.017 24.3 10.0 107 454-563 12-148 (260)
422 3ot5_A UDP-N-acetylglucosamine 20.7 7.1E+02 0.024 25.8 11.9 70 477-562 254-326 (403)
423 2x6t_A ADP-L-glycero-D-manno-h 20.7 1.9E+02 0.0065 28.9 7.2 106 455-564 46-163 (357)
424 3euc_A Histidinol-phosphate am 20.7 2.8E+02 0.0094 27.5 8.4 100 455-561 86-197 (367)
425 2vqe_K 30S ribosomal protein S 20.7 2.1E+02 0.0072 26.0 6.7 46 466-514 64-111 (129)
426 2pl1_A Transcriptional regulat 20.6 2.7E+02 0.0092 22.3 7.0 76 482-565 2-81 (121)
427 3uog_A Alcohol dehydrogenase; 20.6 3.2E+02 0.011 27.8 9.1 54 451-511 186-239 (363)
428 1edo_A Beta-keto acyl carrier 20.6 1.8E+02 0.0061 27.2 6.6 106 455-563 1-136 (244)
429 3qp9_A Type I polyketide synth 20.5 2.4E+02 0.0083 30.9 8.5 112 452-565 248-402 (525)
430 4ffc_A 4-aminobutyrate aminotr 20.5 3.4E+02 0.011 28.5 9.4 103 456-561 127-264 (453)
431 3cg4_A Response regulator rece 20.4 2.2E+02 0.0076 23.6 6.6 79 479-565 6-90 (142)
432 3ius_A Uncharacterized conserv 20.4 1.7E+02 0.0058 28.1 6.6 93 456-565 6-103 (286)
433 3vp6_A Glutamate decarboxylase 20.4 7.3E+02 0.025 26.5 12.3 101 455-562 155-284 (511)
434 3bcv_A Putative glycosyltransf 20.3 1.7E+02 0.0059 27.0 6.4 56 457-512 10-66 (240)
435 3t18_A Aminotransferase class 20.3 3.4E+02 0.012 27.4 9.2 100 456-561 103-223 (413)
436 3a9z_A Selenocysteine lyase; P 20.2 6.8E+02 0.023 25.3 12.0 20 455-474 79-98 (432)
437 3h5i_A Response regulator/sens 20.1 3.3E+02 0.011 22.7 7.8 80 480-566 5-88 (140)
438 1ax4_A Tryptophanase; tryptoph 20.1 3.4E+02 0.011 28.0 9.2 51 455-509 92-147 (467)
439 3b1d_A Betac-S lyase; HET: PLP 25.5 22 0.00075 36.3 0.0 22 455-476 90-111 (392)
440 3o1l_A Formyltetrahydrofolate 20.0 2.2E+02 0.0077 29.3 7.6 74 457-536 109-196 (302)
No 1
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A*
Probab=100.00 E-value=3.4e-71 Score=586.98 Aligned_cols=313 Identities=25% Similarity=0.398 Sum_probs=275.9
Q ss_pred ceecccCcchhhhhhcccchhHHHHHHHHhhhcCcccchHHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHH
Q 006256 309 YEHGTQLPVLQSKFFQLDTLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFL 388 (653)
Q Consensus 309 ~~~~~~~~~~~~~~~ai~~mhPAI~~LGl~~~~~~i~Gsnaraiaml~a~~~vI~dy~~p~~~~~~rdL~~~L~~~i~~L 388 (653)
-.+|..|.++++++.+|+.| +++|+.+.+++.+.+|..+++.+.+. ...+|.+.|+.++++|
T Consensus 14 ~~~~~~~~~~~~~~~aI~~m--------------~VrGApai~iaaa~~l~~~~~~~~~~----~~~~l~~~l~~~~~~L 75 (338)
T 3a11_A 14 GRHMAVVKEVLEIAEKIKNM--------------EIRGAGKIARSAAYALQLQAEKSKAT----NVDEFWKEMKQAAKIL 75 (338)
T ss_dssp -----CCSHHHHHHHHHHTC--------------SSCSHHHHHHHHHHHHHHHHHHCCCC----SHHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCHHHHHHHHHhC--------------cEeCcHHHHHHHHHHHHHHHHhccCC----CHHHHHHHHHHHHHHH
Confidence 34566777777766665554 56666666777777777777766542 3578999999999999
Q ss_pred HhcCCccccHHHHHHHHHHHHHh-cCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEeCChHHH
Q 006256 389 IDCRPLSVSMGNAIRFLKSQIAK-IPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAV 467 (653)
Q Consensus 389 ~~aRPtsVsmgNAIr~lk~~I~~-~~~~~~~~eaK~~L~e~I~~fi~E~i~~a~~~Ia~~a~~~I~dGdvILT~g~Ss~V 467 (653)
.++|||++||+|+++++++.+.+ .....+.+++|+.+++.+++|++| +..+++.|+++|+++|.+|++|||||||.+|
T Consensus 76 ~~aRPtav~L~~a~~~~~~~i~~~~~~~~~~~~~k~~l~~~a~~~~~e-~~~~~~~I~~~g~~~I~~g~~ILTh~~S~tv 154 (338)
T 3a11_A 76 FETRPTAVSLPNALRYVMHRGKIAYSSGADLEQLRFVIINAAKEFIHN-SEKALERIGEFGAKRIEDGDVIMTHCHSKAA 154 (338)
T ss_dssp HTTCTTCSHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHTTCCTTCEEEECSCCHHH
T ss_pred HHhCCChHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCEEEEeCCcHHH
Confidence 99999999999999999998864 222346789999999999999998 4568999999999999999999999999999
Q ss_pred HHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcceeEecCCCeecccchHH
Q 006256 468 EMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTAC 547 (653)
Q Consensus 468 e~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~ 547 (653)
.++|+.|+++|++|+|||+||||++||+.++++|.+.||+||||+|||++|+|++||+||||||+|++||+++||+|||+
T Consensus 155 l~~l~~A~~~gk~~~V~v~EtRP~~qGrltA~eL~~~GI~vtlI~Dsa~~~~M~~Vd~VivGAd~V~anG~v~NKiGT~~ 234 (338)
T 3a11_A 155 ISVMKTAWEQGKDIKVIVTETRPKWQGKITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTAL 234 (338)
T ss_dssp HHHHHHHHHTTCCCEEEEECCTTTTHHHHHHHHHHHTTCCEEEECGGGTTTTGGGCSEEEECCSEECTTSCEEEETTHHH
T ss_pred HHHHHHHHHCCCeEEEEEeCCCCchhhHHHHHHHHhCCCCEEEEehHHHHHHHHhCCEEEECccEEecCCCEeecccHHH
Confidence 99999999999999999999999999988889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCeeeeccccccccccccCcccccccCCcccccccCCCcccccCCCccCCCCcccccccccccCCCCccEE
Q 006256 548 VAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGDPDSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDYVSLI 627 (653)
Q Consensus 548 lAl~Ak~~~VPVyV~aetyKf~~~~~~ds~~~nElrdp~ev~~~~g~~~~~~l~~~~~~~~l~v~Np~FDvTPpeLIt~I 627 (653)
+|++||+||||||||||+|||++.++.|..++||+|+|+|++.+ |.. ..| +++++++||+|||||++|||+|
T Consensus 235 lAl~Ak~~~vPfyV~a~~~k~d~~~~~g~~i~iE~r~~~ev~~~-g~~-----~~w--~~~v~v~NPaFDvTP~~lIt~i 306 (338)
T 3a11_A 235 IALTAKEHRVWTMIAAETYKFHPETMLGQLVEIEMRDPTEVIPE-DEL-----KTW--PKNIEVWNPAFDVTPPEYVDVI 306 (338)
T ss_dssp HHHHHHHTTCEEEEECCGGGBCSCCSSSSCCCCCBCCGGGTSCH-HHH-----TTS--CTTEEECCBSEEEECGGGCSEE
T ss_pred HHHHHHHcCCCEEEecccceecccCCCCcccccccCCHHHcccc-ccc-----ccC--CCCceecCcceeccCHHHcCEE
Confidence 99999999999999999999999999999999999999999865 321 113 5789999999999999999999
Q ss_pred EeCCCCCCCCCHHHHHHHhhc
Q 006256 628 ITDYGMIPPTSVPVIVREYGR 648 (653)
Q Consensus 628 ITE~Gvi~PssV~~ilrey~~ 648 (653)
|||.|+++|++|+.+|++||.
T Consensus 307 ITE~Gv~~p~~v~~~L~e~y~ 327 (338)
T 3a11_A 307 ITERGIIPPYAAIDILREEFG 327 (338)
T ss_dssp EETTEEECGGGHHHHHHHHHC
T ss_pred ecCCCccCchhHHHHHHHHhC
Confidence 999999999999999999996
No 2
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=100.00 E-value=2.5e-71 Score=593.86 Aligned_cols=321 Identities=21% Similarity=0.333 Sum_probs=288.2
Q ss_pred cCccccc--ccCCcceecccCcchhhhhhcccch----hHHHHHHHHhhhcCcccchHHHHHHHHHHHHHHHHhcCCCCc
Q 006256 297 RNRVELF--RHLPQYEHGTQLPVLQSKFFQLDTL----HPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPA 370 (653)
Q Consensus 297 ~~~v~lf--~hLP~~~~~~~~~~~~~~~~ai~~m----hPAI~~LGl~~~~~~i~Gsnaraiaml~a~~~vI~dy~~p~~ 370 (653)
.+.|.|| +.||++++|+.|.++++++.+|+.| +|+| +.++|+++++++++.. +
T Consensus 36 ~~~l~ilDq~~lP~~~~~~~~~~~~~~~~aIk~m~VrGApaI--------------giaaa~~l~l~~~~~~----~--- 94 (374)
T 2yvk_A 36 ETAITILNQQKLPDETEYLELTTKEDVFDAIVTLKVRGAPAI--------------GITAAFGLALAAKDIE----T--- 94 (374)
T ss_dssp SSCEEEECGGGTTTCCCEEEECSHHHHHHHHHTTSSCSHHHH--------------HHHHHHHHHHHHTTCC----C---
T ss_pred CCEEEEEecCCCCCeEEEEEeCCHHHHHHHHHhCccCCcHHH--------------HHHHHHHHHHHHHhcc----C---
Confidence 3479999 9999999999999999999999999 6998 5588899988876532 1
Q ss_pred cchHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006256 371 KTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVT 450 (653)
Q Consensus 371 ~~~~rdL~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~~~~~~~~~~eaK~~L~e~I~~fi~E~i~~a~~~Ia~~a~~ 450 (653)
...++|.+.|+.++++|.+||||++||+|+++++++.+.+. .+.+++|+.+++.+++|++| +..+++.|+++|++
T Consensus 95 -~~~~~l~~~l~~~~~~L~~aRPtavnL~~ai~r~~~~i~~~---~~~~~~k~~l~~~a~~~~~e-~~~~~~~I~~~g~~ 169 (374)
T 2yvk_A 95 -DNVTEFRRRLEDIKQYLNSSRPTAINLSWALERLSHSVENA---ISVNEAKTNLVHEAIQIQVE-DEETCRLIGQNALQ 169 (374)
T ss_dssp -SCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHHHHTTTC---SSHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHGG
T ss_pred -CCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 23578999999999999999999999999999999888543 35788999999999999998 45799999999999
Q ss_pred hccCCCEEEEeCCh--------HHHHHHHHHHHHcCCeeEEEEeCCCCCchHHH-HHHHHHhCCCCEEEEccchHHHHhh
Q 006256 451 KIRDGDVLLTYGSS--------SAVEMILQHAHELGKQFRVVIVDSRPKHEGKL-LLRRLVRKGLSCTYTHINAISYIIH 521 (653)
Q Consensus 451 ~I~dGdvILT~g~S--------s~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~-La~eL~~~GI~vT~I~DsAv~~iM~ 521 (653)
+|.+|++||||||| .++.++|+.|+++|++|+|||+||||++||.+ ++++|.+.||+||||+|||++|+|+
T Consensus 170 ~I~~g~~ILThcnsg~Lat~g~gTal~~l~~A~~~gk~~~V~v~EtRP~~qG~rltA~eL~~~GIpvtlI~Dsa~~~~M~ 249 (374)
T 2yvk_A 170 LFKKGDRIMTICNAGSIATSRYGTALAPFYLAKQKDLGLHIYACETRPVLQGSRLTAWELMQGGIDVTLITDSMAAHTMK 249 (374)
T ss_dssp GCCTTCEEEECSCCSTTTSSSSCSTTHHHHHHHHTTCCCEEEEECCTTTTHHHHTHHHHHHTTTCEEEEECGGGHHHHHH
T ss_pred HhCCCCEEEEecCCCccccCCCcHHHHHHHHHHHcCCEEEEEEeCCCCccccHHHHHHHHHHcCCCEEEEehhHHHHHhh
Confidence 99999999999976 35669999999999999999999999999986 4799999999999999999999999
Q ss_pred h--ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeeccccccccccccCcccccccCCcccccccCCCccccc
Q 006256 522 E--VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGDPDSISKVPGREDINH 599 (653)
Q Consensus 522 ~--Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~~~ds~~~nElrdp~ev~~~~g~~~~~~ 599 (653)
+ ||+||||||+|++||+++||+|||++|++||+||||||||||+|||++.++.|..+.+|+|+|+|+..+.|.
T Consensus 250 ~~~Vd~ViVGAD~V~aNG~v~NKiGTy~lAl~Ak~~~vPfyV~ap~~k~d~~~~~g~~i~iEer~~~Ev~~~~g~----- 324 (374)
T 2yvk_A 250 EKQISAVIVGADRIAKNGDTANKIGTYGLAILANAFDIPFFVAAPLSTFDTKVKCGADIPIEERDPEEVRQISGV----- 324 (374)
T ss_dssp HTTCCEEEECCSEEETTCCEEEETTHHHHHHHHHHTTCCEEEECCGGGEETTCSSGGGSCCCBCCTHHHHEETTE-----
T ss_pred hcCCCEEEECccEEecCCCEEecccHHHHHHHHHHcCCCEEEecccceeCccCCCccccccccCCHHHhcccCCc-----
Confidence 8 999999999999999999999999999999999999999999999999999998899999999999876542
Q ss_pred CCCccCCCCcccccccccccCCCCccEEEeCCCCCCCCCHHHHHHHhhcCCC
Q 006256 600 LDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMIPPTSVPVIVREYGRGQL 651 (653)
Q Consensus 600 l~~~~~~~~l~v~Np~FDvTPpeLIt~IITE~Gvi~PssV~~ilrey~~~~~ 651 (653)
+..+++++++||+|||||++|||+||||.|+++|++...+.+-|..+++
T Consensus 325 ---~~~~~~v~v~NPaFDvTP~~lIt~iITE~Gv~~P~~~~~l~~~~~~~~~ 373 (374)
T 2yvk_A 325 ---RTAPSNVPVFNPAFDITPHDLISGIITEKGIMTGNYEEEIEQLFKGEKV 373 (374)
T ss_dssp ---ECSCTTCCBCCBSEEEECGGGCSEEEETTEEECSCHHHHHHHHTCC---
T ss_pred ---eecCCCcceeCcceeccCHHHCCEEeccCCccCcchHHHHHHHhhhccC
Confidence 3456889999999999999999999999999999988877765655543
No 3
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5
Probab=100.00 E-value=4.5e-70 Score=585.76 Aligned_cols=314 Identities=20% Similarity=0.307 Sum_probs=285.3
Q ss_pred Cccccc--ccCCcceecccCcchhhhhhcccch----hHHHHHHHHhhhcCcccchHHHHHHHHHHHHHHHHhcCCCCcc
Q 006256 298 NRVELF--RHLPQYEHGTQLPVLQSKFFQLDTL----HPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAK 371 (653)
Q Consensus 298 ~~v~lf--~hLP~~~~~~~~~~~~~~~~ai~~m----hPAI~~LGl~~~~~~i~Gsnaraiaml~a~~~vI~dy~~p~~~ 371 (653)
+.|.|| +.||+++.|+.|.++++++.+|+.| +|+| +.++|++|+++++++.....|.
T Consensus 26 ~~l~ildq~~lP~~~~~~~~~~~~~~~~aIk~m~VrGApaI--------------giaaa~~l~l~~~~~~~~~~~~--- 88 (383)
T 2a0u_A 26 GSLRLLDQRKLPLETVFDDVLTVEDIWSAIKEMRVRGAPAI--------------AVSAALGIAVATQRKAANGELK--- 88 (383)
T ss_dssp TEEEEECTTTTTTCCCEEEECSHHHHHHHHHTTSSCSHHHH--------------HHHHHHHHHHHHHHHHHHSSCC---
T ss_pred CEEEEEecCCCCCceEEEEcCCHHHHHHHHHhCCCCCcHHH--------------HHHHHHHHHHHHHhhcccccCC---
Confidence 479999 9999999999999999999999999 6999 5689999999999987654332
Q ss_pred chHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006256 372 TLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTK 451 (653)
Q Consensus 372 ~~~rdL~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~~~~~~~~~~eaK~~L~e~I~~fi~E~i~~a~~~Ia~~a~~~ 451 (653)
..++|.+.|+..+++|.++|||++||+|+++++++.+.+...+.+.+++|+.+++.+++|++|. ..+++.|+++|+++
T Consensus 89 -~~~~l~~~l~~~~~~L~~aRPtavnL~na~~r~~~~i~~~~~~~~~~~~k~~l~~~a~~i~~e~-~~~~~~I~~~g~~~ 166 (383)
T 2a0u_A 89 -SGREVQTFLLTSCDFVMTSRPTAVNLFNCLRDLKAQVDKLDPTKAAAEVAQAFVELAEAVYTND-VAFNEGIMRHGAAH 166 (383)
T ss_dssp -CHHHHHHHHHHHHHHHTTSCCSCSHHHHHHHHHHHHHHHSCTTSCSHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 3578899999999999999999999999999999998764333457889999999999999984 57999999999999
Q ss_pred cc--------CCCEEEEeCCh--------HHHHHHHHHHHHcCCeeEEEEeCCCCCchHHH-HHHHHHhCCCCEEEEccc
Q 006256 452 IR--------DGDVLLTYGSS--------SAVEMILQHAHELGKQFRVVIVDSRPKHEGKL-LLRRLVRKGLSCTYTHIN 514 (653)
Q Consensus 452 I~--------dGdvILT~g~S--------s~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~-La~eL~~~GI~vT~I~Ds 514 (653)
|. +|++||||||| .++.++|+.|+++|++|+|||+||||++||.+ ++++|.+.||+||||+||
T Consensus 167 I~~~~~~~~~~g~~ILThcnsg~Lat~g~gTal~~l~~A~~~gk~~~V~v~EtRP~~qGarltA~eL~~~GIpvtlI~Ds 246 (383)
T 2a0u_A 167 ILAAAKAEGRDKVSILTICNTGALATSRYGTALGVVRQLFYDGKLERVYACETRPWNQGARLTVYECVQEDIPCTLICDG 246 (383)
T ss_dssp HHHHHHHTTCSSEEEEECSCCSTTTSSSSCSHHHHHHHHHHTTCEEEEEEECCTTTTHHHHTHHHHHHHTTCCEEEECGG
T ss_pred hhhhccccCCCCCEEEEecCCcchhcCCCchHHHHHHHHHHcCCeEEEEEeCCCCccchHHHHHHHHHHcCCCEEEEehh
Confidence 99 99999999987 46679999999999999999999999999986 579999999999999999
Q ss_pred hHHHHhhh--ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeeccccccccccccCcccccccCCccccccc-
Q 006256 515 AISYIIHE--VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGDPDSISKV- 591 (653)
Q Consensus 515 Av~~iM~~--Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~~~ds~~~nElrdp~ev~~~- 591 (653)
|++|+|++ ||+||||||+|++||+++||+|||++|++||+||||||||||+|||++.++.|..+.+|+|+|+|++.+
T Consensus 247 a~~~~M~~~~Vd~ViVGAD~V~aNG~v~NKiGTy~lAl~Ak~~~vPfyV~ap~~k~d~~~~~g~~i~iEer~~~Ev~~~~ 326 (383)
T 2a0u_A 247 AASSLMLNRKIDAVVVGADRICQNGDTANKIGTYNLAVSAKFHGVKLYVAAPTTTLDVKTASGNHVEIEEREPTEITTNL 326 (383)
T ss_dssp GHHHHHHHSCCCEEEECCSEECTTCCEEEETTHHHHHHHHHHTTCCEEEECCGGGBCTTCCSGGGSCCCBCCTHHHHBCT
T ss_pred HHHHHhhcCCCCEEEECccEEecCCCEeecccHHHHHHHHHHcCCCEEEeCCcceecCcCCCccccccccCCHHHhcccc
Confidence 99999998 999999999999999999999999999999999999999999999999999998899999999999877
Q ss_pred -CCCcccccCCCccCCCC--cccccccccccCCCCcc-EEEeCCCCCCCCC
Q 006256 592 -PGREDINHLDGWDKSEN--LQLLNLIYDATPSDYVS-LIITDYGMIPPTS 638 (653)
Q Consensus 592 -~g~~~~~~l~~~~~~~~--l~v~Np~FDvTPpeLIt-~IITE~Gvi~Pss 638 (653)
.|.. ..+++ ++++||+|||||++||| +||||.|+++|+.
T Consensus 327 ~~g~~--------~a~~~~~v~v~NPaFDvTP~~lIt~~iITE~Gv~~p~~ 369 (383)
T 2a0u_A 327 VTKQR--------VVADGPHLSIWNPVFDITPSELITGGIITEKGVQAPAA 369 (383)
T ss_dssp TTCCB--------CSCCCTTEEECCBSEEEECGGGCCSEEECSSCEECCCS
T ss_pred cCCce--------ecCCCCceeeecccccccChHHCCcEEEccCCccCCcc
Confidence 3421 23456 99999999999999999 9999999998764
No 4
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=100.00 E-value=2.3e-70 Score=581.91 Aligned_cols=311 Identities=21% Similarity=0.304 Sum_probs=282.0
Q ss_pred cCccccc--ccCCcceecccCcchhhhhhcccch----hHHHHHHHHhhhcCcccchHHHHHHHHHHHHHHHHhcCCCCc
Q 006256 297 RNRVELF--RHLPQYEHGTQLPVLQSKFFQLDTL----HPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPA 370 (653)
Q Consensus 297 ~~~v~lf--~hLP~~~~~~~~~~~~~~~~ai~~m----hPAI~~LGl~~~~~~i~Gsnaraiaml~a~~~vI~dy~~p~~ 370 (653)
.+.|.|| +.||++++|..|.++++.+.+|++| +|+| +.++|++|++++++... .
T Consensus 14 ~~~~~~ldq~~lP~~~~~~~~~~~~~~~~aIk~m~VrGAp~i--------------g~aaa~~l~l~~~~~~~--~---- 73 (347)
T 1t9k_A 14 GNSLKLLDQRKLPFIEEYVECKTHEEVAHAIKEMIVRGAPAI--------------GVAAAFGYVLGLRDYKT--G---- 73 (347)
T ss_dssp SSCEEEECTTTTTTCCCEEEECSHHHHHHHHHHTSSCSHHHH--------------HHHHHHHHHHHHHTCCS--S----
T ss_pred CCEEEEEeCCCCCCceEEEEeCCHHHHHHHHHhCCcCCcHHH--------------HHHHHHHHHHHHHhccc--C----
Confidence 3479999 9999999999999999999999999 6998 55889999999876321 0
Q ss_pred cchHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006256 371 KTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVT 450 (653)
Q Consensus 371 ~~~~rdL~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~~~~~~~~~~eaK~~L~e~I~~fi~E~i~~a~~~Ia~~a~~ 450 (653)
... +.|+.++++|.+||||++||+|+++++++.+.+.. +.+++|+.+++.+++|++| +..+++.|+++|++
T Consensus 74 --~~~---~~l~~~~~~L~~aRPtav~l~~a~~~~~~~i~~~~---~~~~~k~~l~~~~~~~~~e-~~~~~~~I~~~g~~ 144 (347)
T 1t9k_A 74 --SLT---DWMKQVKETLARTRPTAVNLFWALNRMEKVFFENA---DRENLFEILENEALKMAYE-DIEVNKAIGKNGAQ 144 (347)
T ss_dssp --CHH---HHHHHHHHHHHTSCSSCTHHHHHHHHHHHHHHTTT---TCTTHHHHHHHHHHHHHHH-HHHHHHHHHHHHHT
T ss_pred --CHH---HHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 112 44999999999999999999999999999987542 4567999999999999998 55689999999999
Q ss_pred hccCCCEEEEeCChH--------HHHHHHHHHHHcCCeeEEEEeCCCCCchHHH-HHHHHHhCCCCEEEEccchHHHHhh
Q 006256 451 KIRDGDVLLTYGSSS--------AVEMILQHAHELGKQFRVVIVDSRPKHEGKL-LLRRLVRKGLSCTYTHINAISYIIH 521 (653)
Q Consensus 451 ~I~dGdvILT~g~Ss--------~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~-La~eL~~~GI~vT~I~DsAv~~iM~ 521 (653)
+|++|++|||||||. ++.++|+.|+++|++|+|||+||||++||.+ ++++|.+.||+||||+|||++|+|+
T Consensus 145 ~I~~g~~ILThcns~~lat~~~gtvl~~l~~A~~~gk~~~V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~M~ 224 (347)
T 1t9k_A 145 LIKDGSTILTHCNAGALATVDYGTALGVIRAAVESGKRIRVFADETRPYLQGARLTAWELMKDGIEVYVITDNMAGWLMK 224 (347)
T ss_dssp TSCTTEEEEECSCCSGGGSSSSCSHHHHHHHHHHTTCCEEEEEECCTTTTHHHHTHHHHHHTTTCEEEEECGGGHHHHHH
T ss_pred HhCCCCEEEEecCCCccccCCccHHHHHHHHHHHCCCeEEEEEeCCCCccccHHHHHHHHHhCCCCEEEEehhHHHHHhh
Confidence 999999999999998 8889999999999999999999999999987 5799999999999999999999998
Q ss_pred h--ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeeccccccccccccCcccccccCCcccccccCCCccccc
Q 006256 522 E--VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGDPDSISKVPGREDINH 599 (653)
Q Consensus 522 ~--Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~~~ds~~~nElrdp~ev~~~~g~~~~~~ 599 (653)
+ ||+||||||+|++||+++||+|||++|++||+||||||||||+|||++.++.+..+++|+|+|+|+..+.|.
T Consensus 225 ~~~Vd~VivGAd~V~aNG~v~NKiGT~~lAl~Ak~~~vPfyV~ap~~k~d~~~~~g~~i~iE~r~~~ev~~~~g~----- 299 (347)
T 1t9k_A 225 RGLIDAVVVGADRIALNGDTANKIGTYSLAVLAKRNNIPFYVAAPVSTIDPTIRSGEEIPIEERRPEEVTHCGGN----- 299 (347)
T ss_dssp TTCCSEEEECCSEEETTSCEEEETTHHHHHHHHHHTTCCEEEECCGGGEETTCSSGGGSCCCBCCTHHHHEETTE-----
T ss_pred cCCCCEEEECccEEecCCCEEecccHHHHHHHHHHcCCCEEEecccceeccccCCccccccccCChHhccccCCe-----
Confidence 7 999999999999999999999999999999999999999999999999999998899999999999876542
Q ss_pred CCCccCCCCcccccccccccCCCCccEEEeCCCCCCCCCHHHHHH
Q 006256 600 LDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMIPPTSVPVIVR 644 (653)
Q Consensus 600 l~~~~~~~~l~v~Np~FDvTPpeLIt~IITE~Gvi~PssV~~ilr 644 (653)
+..+++++++||+|||||++|||+||||.|+++|++...+.+
T Consensus 300 ---~~~~~~v~v~NPaFDvTP~~lIt~iITE~Gv~~p~~~~~l~~ 341 (347)
T 1t9k_A 300 ---RIAPEGVKVLNPAFDVTENTLITAIITEKGVIRPPFEENIKK 341 (347)
T ss_dssp ---ECSCTTCEECCBSEEEECGGGCSEEEETTEEECSSHHHHHHH
T ss_pred ---eccCCCccccCcccccCCHHHCCEEeccCCccCcchHHHHHH
Confidence 345788999999999999999999999999999999877664
No 5
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5
Probab=100.00 E-value=1.3e-69 Score=576.84 Aligned_cols=310 Identities=23% Similarity=0.325 Sum_probs=280.8
Q ss_pred cccc--ccCCcceecccCcchhhhhhcccch----hHHHHHHHHhhhcCcccchHHHHHHHHHHHHHHHHhcCCCCccch
Q 006256 300 VELF--RHLPQYEHGTQLPVLQSKFFQLDTL----HPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTL 373 (653)
Q Consensus 300 v~lf--~hLP~~~~~~~~~~~~~~~~ai~~m----hPAI~~LGl~~~~~~i~Gsnaraiaml~a~~~vI~dy~~p~~~~~ 373 (653)
|.|| +.||++++|+.|.++++++.+|+.| +|+| +.++|++|++++++. .+ ..
T Consensus 12 l~~ldq~~lP~~~~~~~~~~~~~~~~aIk~m~VrGApai--------------~iaaa~~l~l~~~~~----~~----~~ 69 (351)
T 1t5o_A 12 LKLIDQTKLPEKLEVIECRNVEELADAIKKLAVRGAPAL--------------EAAGAYGIALAARER----EF----AD 69 (351)
T ss_dssp EEEECGGGTTTCCCEEEECSHHHHHHHHHTTSSCSHHHH--------------HHHHHHHHHHHTTSS----CC----SC
T ss_pred EEEEecCCCCCeEEEEEeCCHHHHHHHHHhCCcCCcHHH--------------HHHHHHHHHHHHHhc----cC----CC
Confidence 8889 9999999999999999999999999 6988 557888888877542 11 23
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 006256 374 SRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIR 453 (653)
Q Consensus 374 ~rdL~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~~~~~~~~~~eaK~~L~e~I~~fi~E~i~~a~~~Ia~~a~~~I~ 453 (653)
..+|.+.|+.++++|.+||||++||+|+++++++.+.+ ..+.+++|+.+++.+++|++|. ..+++.|+++|+++|+
T Consensus 70 ~~~l~~~l~~~~~~L~~aRPtav~l~~a~~~~~~~i~~---~~~~~~~k~~l~~~~~~~~~e~-~~~~~~I~~~g~~~I~ 145 (351)
T 1t5o_A 70 VDELKEHLKKAADFLASTRPTAVNLFVGIERALNAALK---GESVEEVKELALREAEKLAEED-VERNRKMGEYGAELLE 145 (351)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHTT---CSSHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhh---cCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhC
Confidence 57899999999999999999999999999999998864 2467889999999999999984 5699999999999999
Q ss_pred CCCEEEEeCCh--------HHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHH-HHHHHhCCCCEEEEccchHHHHhhh--
Q 006256 454 DGDVLLTYGSS--------SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-LRRLVRKGLSCTYTHINAISYIIHE-- 522 (653)
Q Consensus 454 dGdvILT~g~S--------s~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~L-a~eL~~~GI~vT~I~DsAv~~iM~~-- 522 (653)
+|++||||||| .++.++|+.|+++|++|+|||+||||++||.+| +++|.+.||+||||+|||++|+|++
T Consensus 146 ~g~~ILThcnsg~lat~g~gtal~~l~~A~~~gk~~~V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~M~~~~ 225 (351)
T 1t5o_A 146 DGDVVLTYCNAGRLATVDWGTALGVVRSAVEQGKEIRVIACETRPLNQGSRLTCWELMEDGIDVTLITDSMVGIVMQKGM 225 (351)
T ss_dssp TTCEEEECSCCSSSSSSSSCSHHHHHHHHHHTTCCCEEEEECCTTTTHHHHTHHHHHHHTTCCEEEECGGGHHHHHHTTC
T ss_pred CCCEEEEecCCccccccCCChHHHHHHHHHHCCCEEEEEEeCCCcccccHHHHHHHHHhCCCCEEEEehhHHHHHhhcCC
Confidence 99999999975 356699999999999999999999999999875 7999999999999999999999987
Q ss_pred ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeeccccccccccccCcccccccCCcccccccCCCcccccCCC
Q 006256 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGDPDSISKVPGREDINHLDG 602 (653)
Q Consensus 523 Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~~~ds~~~nElrdp~ev~~~~g~~~~~~l~~ 602 (653)
||+||||||+|++|| ++||+|||++|++||+||||||||||+|||++. +.+..+++|+|+|+|+..+.|.
T Consensus 226 Vd~VivGAd~V~aNG-v~NKiGT~~lAl~Ak~~~vPfyV~a~~~k~d~~-~~g~~i~iEer~~~ev~~~~g~-------- 295 (351)
T 1t5o_A 226 VDKVIVGADRIVRDA-VFNKIGTYTVSVVAKHHNIPFYVAAPKATFDWE-RTAKDVVIEERPREELIFCGKR-------- 295 (351)
T ss_dssp CSEEEECCSEEETTE-EEEETTHHHHHHHHHHTTCCEEEECCGGGBCTT-CCGGGCCCCBCCTHHHHEETTE--------
T ss_pred CCEEEECccchhhcC-cccccCHHHHHHHHHHcCCCEEEeCccceeccc-cCCCccccccCCHHHhcccCCe--------
Confidence 999999999999999 999999999999999999999999999999999 8888889999999999876542
Q ss_pred ccCCCCcccccccccccCCCCccEEEeCCCCCCCCCHHHHHHH
Q 006256 603 WDKSENLQLLNLIYDATPSDYVSLIITDYGMIPPTSVPVIVRE 645 (653)
Q Consensus 603 ~~~~~~l~v~Np~FDvTPpeLIt~IITE~Gvi~PssV~~ilre 645 (653)
+..+++++++||+|||||++|||+||||.|+++|++...+.+-
T Consensus 296 ~~~~~~v~v~NPaFDvTP~~lIt~iITE~Gv~~p~~~~~l~~~ 338 (351)
T 1t5o_A 296 QIAPLNVKVYNPAFDPTPLENVTALITEYGVIYPPYEVNVPKV 338 (351)
T ss_dssp ECSCTTCEECCBSEEEEEGGGCSEEEETTEEECSCHHHHHHHH
T ss_pred eecCCCcceeCccccCCCHHHCCEEEeCCCccCcchHHHHHHH
Confidence 2456889999999999999999999999999999998766643
No 6
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5
Probab=100.00 E-value=4.4e-63 Score=511.90 Aligned_cols=274 Identities=26% Similarity=0.327 Sum_probs=257.4
Q ss_pred hhHHHHHHHHhhhcCcccchHHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHH
Q 006256 328 LHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKS 407 (653)
Q Consensus 328 mhPAI~~LGl~~~~~~i~Gsnaraiaml~a~~~vI~dy~~p~~~~~~rdL~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~ 407 (653)
+||.+..+...+.+++++|+.++|++++.+|..+++++ ++ .+|++.|+.++++|.++||+++||+|+++++
T Consensus 2 l~~~~~~~~~~i~~~~vrGa~~i~~aa~~~l~~~~~~~-~~------~~~~~~l~~~~~~L~~~RPtav~l~~a~~~~-- 72 (276)
T 1vb5_A 2 LPERVLEILREMKRERIKGASWLAKKGAEAFLTLAEEL-DE------SLLEDAIMELREEVVKVNPSMASLYNLARFI-- 72 (276)
T ss_dssp CCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHS-CT------TTHHHHHHHHHHHHHHHCTTCHHHHHHHHHS--
T ss_pred CcccHHHHHHHHHhCcEeCcHHHHHHHHHHHHHHHHhc-CH------HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHc--
Confidence 58899999999999999999999999999999999887 32 4678889999999999999999999999998
Q ss_pred HHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeC
Q 006256 408 QIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVD 487 (653)
Q Consensus 408 ~I~~~~~~~~~~eaK~~L~e~I~~fi~E~i~~a~~~Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~E 487 (653)
+ .+++|+.+++.+++|++| +..++++|+++++++|++|++|||||+|+++..+|+.|+++|++|+|||+|
T Consensus 73 ---~------~~~~k~~l~~~~~~~~~~-~~~~~~~Ia~~a~~~I~~g~~IlT~~~s~Tv~~~l~~a~~~~~~~~V~v~e 142 (276)
T 1vb5_A 73 ---P------VTNRRDILKSRALEFLRR-MEEAKRELASIGAQLIDDGDVIITHSFSSTVLEIIRTAKERKKRFKVILTE 142 (276)
T ss_dssp ---C------CCSCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCTTEEEECCSCCHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred ---C------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHccCCCEEEEeCCChHHHHHHHHHHHcCCeEEEEEeC
Confidence 1 245678899999999987 788999999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeeccccc
Q 006256 488 SRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYK 567 (653)
Q Consensus 488 SRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~aetyK 567 (653)
|||++||+.++++|.+.||+||||+|++++++|++||+||+|||+|++||+++||+|||++|++||+|++|||||||+||
T Consensus 143 trP~~qG~~~a~~L~~~gI~vtli~dsa~~~~m~~vd~vivGAd~i~~nG~v~nkiGt~~iA~~A~~~~vp~~V~a~~~K 222 (276)
T 1vb5_A 143 SSPDYEGLHLARELEFSGIEFEVITDAQMGLFCREASIAIVGADMITKDGYVVNKAGTYLLALACHENAIPFYVAAETYK 222 (276)
T ss_dssp CTTTTHHHHHHHHHHHTTCCEEEECGGGHHHHHTTCSEEEECCSEECTTSCEEEETTHHHHHHHHHHTTCCEEEECCGGG
T ss_pred CCcchhhHHHHHHHHHCCCCEEEEcHHHHHHHHccCCEEEEcccEEecCCCEeechhHHHHHHHHHHcCCCEEEeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCcccccccCCcccccccCCCcccccCCCccCCCCcccccccccccCCCCccEEEeCCCCCCCCCHH
Q 006256 568 FHERVQLDSICSNELGDPDSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMIPPTSVP 640 (653)
Q Consensus 568 f~~~~~~ds~~~nElrdp~ev~~~~g~~~~~~l~~~~~~~~l~v~Np~FDvTPpeLIt~IITE~Gvi~PssV~ 640 (653)
|++. ..+..+.||+|+++| ++++++||+||+||++|||+||||.|+++|++|+
T Consensus 223 ~~~~-~~~~~i~iE~r~~~e-------------------~~v~v~np~fD~tP~~lI~~iITe~Gv~~p~~v~ 275 (276)
T 1vb5_A 223 FHPT-LKSGDVMLMERDLIR-------------------GNVRIRNVLFDVTPWKYVRGIITELGIVIPPRDI 275 (276)
T ss_dssp BCSS-CCGGGCCCCBCCCEE-------------------TTEECCCBCEEEECGGGCSEEEETTEEECTTTTC
T ss_pred cCcc-cCccccccccCCccc-------------------cCccccCCCeEecCHHHCCEEEeCCCccCccccC
Confidence 9999 778888999999875 3578999999999999999999999999999875
No 7
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=100.00 E-value=1.2e-62 Score=516.47 Aligned_cols=283 Identities=24% Similarity=0.334 Sum_probs=239.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhcC-CCccHHHHHHHHHH
Q 006256 349 ARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIP-ISLSESEAKATLHS 427 (653)
Q Consensus 349 araiaml~a~~~vI~dy~~p~~~~~~rdL~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~~~~-~~~~~~eaK~~L~e 427 (653)
+.+++.+.+|.++++...+ ++..+|.+.|+.++++|.++|| ++||+|+++++++.|.... ...+.+++|+.|++
T Consensus 21 s~aiAAi~aL~~~l~~s~~----~T~~el~~~l~~a~~~L~~~r~-avsl~~a~~~~~~~i~~~~~~~~~~~~~k~~l~~ 95 (315)
T 3ecs_A 21 ASAVAAIRTLLEFLKRDKG----ETIQGLRANLTSAIETLCGVDS-SVAVSSGGELFLRFISLASLEYSDYSKCKKIMIE 95 (315)
T ss_dssp CHHHHHHHHHHHHHTCCC--------CHHHHHHHHHHHTTTTTSC-CHHHHHHHHHHHHHCC-----------CTTHHHH
T ss_pred HHHHHHHHHHHHHHHhCCC----CCHHHHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHHHHHhhcccCCHHHHHHHHHH
Confidence 4557888999999986543 3557899999999999999997 8999999999988763321 22356889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCC
Q 006256 428 DIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLS 507 (653)
Q Consensus 428 ~I~~fi~E~i~~a~~~Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~ 507 (653)
.++.|+++ +..+++.|+++|+++|++|++|||||+|++|+++|+.|+++|++|+|||+||||++||.+|+++|.+.||+
T Consensus 96 ~~~~~~~~-~~~a~~~I~~~~~~~I~~g~~ILTh~~S~tv~~~l~~A~~~gk~~~V~v~EsrP~~qG~~la~~L~~~gI~ 174 (315)
T 3ecs_A 96 RGELFLRR-ISLSRNKIADLCHTFIKDGATILTHAYSRVVLRVLEAAVAAKKRFSVYVTESQPDLSGKKMAKALCHLNVP 174 (315)
T ss_dssp HHHHHHHH-HTTHHHHHHHHHGGGCCTTEEEEECSCCHHHHHHHHHHHTTTCCEEEEEECCTTTTHHHHHHHHHHTTTCC
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHcCCCCEEEEcCCcHHHHHHHHHHHHcCCeEEEEEecCCCcchHHHHHHHHHHcCCC
Confidence 99999855 88999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccchHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeeccccccccccccCc-ccccccCCcc
Q 006256 508 CTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDS-ICSNELGDPD 586 (653)
Q Consensus 508 vT~I~DsAv~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~~~ds-~~~nElrdp~ 586 (653)
||||+|+|++|+|++||+||+|||+|++||+++||+|||++|++||+||||||||||+|||++.++++. .+.+|++++.
T Consensus 175 vtli~Dsa~~~~m~~vd~VivGAd~i~~nG~v~nkiGT~~iAl~Ak~~~vP~~V~a~~~K~~~~~~~~~~~i~~e~~~~~ 254 (315)
T 3ecs_A 175 VTVVLDAAVGYIMEKADLVIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLFPLNQQDVPDKFKYKA 254 (315)
T ss_dssp EEEECGGGHHHHGGGCSEEEEECSEECTTSCEEEETTHHHHHHHHHHTTCCEEEECCGGGBCSCCCSSGGGSCGGGTC--
T ss_pred EEEEehhHHHHHHHhCCEEEECceEEecCCCeeehhhhHHHHHHHHHhCCCEEEEeccccccccCCCCcccCCccccChh
Confidence 999999999999999999999999999999999999999999999999999999999999999988765 4578999998
Q ss_pred cccccCCCcccccCCCccCCCCcccccccccccCCCCccEEEeCCCCCCCCCHHH-HHHHhhc
Q 006256 587 SISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMIPPTSVPV-IVREYGR 648 (653)
Q Consensus 587 ev~~~~g~~~~~~l~~~~~~~~l~v~Np~FDvTPpeLIt~IITE~Gvi~PssV~~-ilrey~~ 648 (653)
+++..+ ..+++++++||+|||||++|||+||||.|+++|++|+. +++.|+.
T Consensus 255 ev~~~~-----------~~~~~v~v~NP~fDvTP~~lIt~iITe~Gv~~p~~vs~eLik~~~~ 306 (315)
T 3ecs_A 255 DTLKVA-----------QTGQDLKEEHPWVDYTAPSLITLLFTDLGVLTPSAVSDELIKLYLA 306 (315)
T ss_dssp ----------------------CCBCCCSEEEECGGGCSEEEETTEEECGGGHHHHHHHHHTC
T ss_pred hccccc-----------cCCCcCcCCCCCccCCCHHHcCEEEcCCCCCCcchhhHHHHHHHHH
Confidence 876432 24568999999999999999999999999999999986 5555653
No 8
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=100.00 E-value=6.3e-48 Score=379.58 Aligned_cols=163 Identities=22% Similarity=0.314 Sum_probs=147.5
Q ss_pred CCeeEEEEeCCCCCchHHHH-HHHHHhCCCCEEEEccchHHHHhhh----ccEEEEcceeEecCCCeecccchHHHHHHH
Q 006256 478 GKQFRVVIVDSRPKHEGKLL-LRRLVRKGLSCTYTHINAISYIIHE----VTRVFLGASSVLSNGTVCSRVGTACVAMVA 552 (653)
Q Consensus 478 gk~f~ViV~ESRP~~EG~~L-a~eL~~~GI~vT~I~DsAv~~iM~~----Vd~VllGAdaIlaNG~V~NKiGT~~lAl~A 552 (653)
||+|+|||+||||++||.+| +++|.+.||+||||+|+|++|+|++ ||+||||||+|++||+++||+|||++|++|
T Consensus 2 ~k~~~V~v~EsRP~~qG~rlta~eL~~~gI~vtlI~Dsa~~~~m~~~~~~Vd~VivGAd~v~~nG~v~nkiGT~~~Al~A 81 (191)
T 1w2w_B 2 PRMGHVFPLETRPYNQGSRLTAYELVYDKIPSTLITDSSIAYRIRTSPIPIKAAFVGADRIVRNGDTANKIGTLQLAVIC 81 (191)
T ss_dssp CEEEEEEEBCCTTTTHHHHTHHHHHHHHTCCBEEBCGGGHHHHHHHCSSCEEEEEECCSEECTTSCEEEETTHHHHHHHH
T ss_pred CcEEEEEEcCCCCccccHHHHHHHHHHcCCCEEEEechHHHHHHHhCCCCCCEEEECccEEecCCCEEecccHHHHHHHH
Confidence 68999999999999999875 7999999999999999999999998 999999999999999999999999999999
Q ss_pred hhCCCCeeeeccccccccccccCcccccccCCcccccccCCC----ccc----------ccCCCccCCCCcccccccccc
Q 006256 553 YGFHIPVLVCCEAYKFHERVQLDSICSNELGDPDSISKVPGR----EDI----------NHLDGWDKSENLQLLNLIYDA 618 (653)
Q Consensus 553 k~~~VPVyV~aetyKf~~~~~~ds~~~nElrdp~ev~~~~g~----~~~----------~~l~~~~~~~~l~v~Np~FDv 618 (653)
|+|+||||||||+|||++++++|..+.+|+|+|+|+...+|. .+. .....|..+++++++||+||+
T Consensus 82 k~~~vPf~V~a~~~k~~~~~~~g~~i~iE~r~~~ev~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~v~Np~fDv 161 (191)
T 1w2w_B 82 KQFGIKFFVVAPKTTIDNVTETGDDIIVEERNPEEFKVVTGTVINPENGSLILNESGEPITGKVGIAPLEINVWNPAFDI 161 (191)
T ss_dssp HHHTCEEEEECCGGGBCSSCCSGGGCCCCBCCTHHHHEEEEEEBCTTTCCBCBCTTSCBCEEEEECSCTTCEECCBSEEE
T ss_pred HHcCCCEEEecccceeeeccCCcceeecccCCHHHhccccCccccccccccccccccccccccccccCCCcccccccccc
Confidence 999999999999999999999998899999999999876542 000 001225678899999999999
Q ss_pred cCCCCccEEEeCCCCCCCCCHH
Q 006256 619 TPSDYVSLIITDYGMIPPTSVP 640 (653)
Q Consensus 619 TPpeLIt~IITE~Gvi~PssV~ 640 (653)
||++|||+||||.|+++|+.+.
T Consensus 162 TP~~lIt~iITE~Gv~~ps~~~ 183 (191)
T 1w2w_B 162 TPHELIDGIITEEGVFTKNSSG 183 (191)
T ss_dssp ECGGGCSEEEETTEEECCCTTS
T ss_pred CCHHHcCEEEecCcccCCCCcc
Confidence 9999999999999999997654
No 9
>1w2w_A 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=99.88 E-value=8.5e-23 Score=203.41 Aligned_cols=166 Identities=13% Similarity=0.185 Sum_probs=139.0
Q ss_pred ccCccccc--ccCCcceecccCcchhhhhhcccch----hHHHHHHHHhhhcCcccchHHHHHHHHHHHHHHHHhcCCCC
Q 006256 296 ARNRVELF--RHLPQYEHGTQLPVLQSKFFQLDTL----HPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPP 369 (653)
Q Consensus 296 ~~~~v~lf--~hLP~~~~~~~~~~~~~~~~ai~~m----hPAI~~LGl~~~~~~i~Gsnaraiaml~a~~~vI~dy~~p~ 369 (653)
..+.|.|| +.||++++|+.|++++++|.+|++| +|+| +.++|++|++++++.-.. .+..
T Consensus 14 ~~~~l~iLDQ~~LP~e~~~~~~~~~~~v~~AIk~M~VRGAPaI--------------giaAA~glal~a~~~~~~-~~~~ 78 (211)
T 1w2w_A 14 ENVSVKVLDQLLLPYTTKYVPIHTIDDGYSVIKSMQVRGAPAI--------------AIVGSLSVLTEVQLIKHN-PTSD 78 (211)
T ss_dssp TSCEEEEECTTTTTTCCCEEECCSHHHHHHHHHTTSSCSHHHH--------------HHHHHHHHHHHHHHHHHC-TTST
T ss_pred CCCEEEEEecCCCCCcEEEEEeCCHHHHHHHHHCCcccCchHH--------------HHHHHHHHHHHHHhcccc-CChh
Confidence 33479999 9999999999999999999999999 6999 569999999999875311 1110
Q ss_pred -----ccchHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006256 370 -----AKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVI 444 (653)
Q Consensus 370 -----~~~~~rdL~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~~~~~~~~~~eaK~~L~e~I~~fi~E~i~~a~~~I 444 (653)
.-....+|...|+..+++|.++|||+|||+|++++|++.+... .+.+++++.+++.++.|++| ...+++.|
T Consensus 79 ~~~~~~~~~~~~~~~~l~~~~~~L~~sRPTAVNL~~Al~r~~~~~~~~---~~~~~~~~~l~~~a~~i~~e-d~~~n~~I 154 (211)
T 1w2w_A 79 VATLYSLVNWESTKTVLNKRLDFLLSSRPTAVNLSNSLVEIKNILKSS---SDLKAFDGSLYNYVCELIDE-DLANNMKM 154 (211)
T ss_dssp GGGGSCTTCHHHHHHHHHHHHHHHHTSCCSCSHHHHHHHHHHHHHHTC---SSHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred hcccccccchHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 0011237888899999999999999999999999999988644 35677899999999999988 55799999
Q ss_pred HHHHHHhc------c---CCCEEEEeCCh---------HHHHHHHHHHHHcCCee
Q 006256 445 VKHAVTKI------R---DGDVLLTYGSS---------SAVEMILQHAHELGKQF 481 (653)
Q Consensus 445 a~~a~~~I------~---dGdvILT~g~S---------s~Ve~vL~~A~e~gk~f 481 (653)
++||+++| . +|++||||||+ +++ ++|+.||++|+.|
T Consensus 155 G~~Ga~lI~~~~~~~~~~dg~~ILTHCNtG~LAT~g~GTAL-gvIr~a~~~Gk~~ 208 (211)
T 1w2w_A 155 GDNGAKYLIDVLQKDGFKDEFAVLTICNTGSLATSGYGTAL-GVIRSLWKDSLAK 208 (211)
T ss_dssp HHHHHHHHHHHHHHTTCCSEEEEEECSCCSGGGSSSSCSHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccCCCCCeEEeECCCchHhhcCcchHH-HHHHHHHHcCCcc
Confidence 99999999 7 89999999998 555 9999999998865
No 10
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomi initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A* 1uj4_A*
Probab=98.08 E-value=1.1e-05 Score=81.31 Aligned_cols=116 Identities=15% Similarity=0.060 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCChHHHHHHHHHHHHc----CCe-eEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc
Q 006256 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHEL----GKQ-FRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN 514 (653)
Q Consensus 440 a~~~Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~----gk~-f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds 514 (653)
..+.|++.|+++|++|++|..-+.|++. .+++...+. +.+ ++| |+.| ...+.+|.+.||++..+.+
T Consensus 8 ~K~~IA~~Aa~~I~dg~~I~LgsGST~~-~~~~~L~~~~~~~~l~~itv-VTnS------~~~a~~l~~~gi~v~~l~~- 78 (227)
T 1uj6_A 8 YKKEAAHAAIAYVQDGMVVGLGTGSTAR-YAVLELARRLREGELKGVVG-VPTS------RATEELAKREGIPLVDLPP- 78 (227)
T ss_dssp HHHHHHHHHHTTCCTTCEEEECCSHHHH-HHHHHHHHHHHTTSSCSCEE-EESS------HHHHHHHHHTTCCBCCCCT-
T ss_pred HHHHHHHHHHHHCCCCCEEEEcCCHHHH-HHHHHHhhhhhhcCCCCEEE-ECCc------HHHHHHHHhCCCeEEEcCC-
Confidence 4567999999999999999976666655 566666443 224 776 4444 5667788888998887722
Q ss_pred hHHHHhhhccEEEEcceeEecCCCeecccchHHH--HHHHhhCCCCeeeeccccccccc
Q 006256 515 AISYIIHEVTRVFLGASSVLSNGTVCSRVGTACV--AMVAYGFHIPVLVCCEAYKFHER 571 (653)
Q Consensus 515 Av~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~l--Al~Ak~~~VPVyV~aetyKf~~~ 571 (653)
.++|+.|+|||.|-.++......|.+.+ +++++. ...|||+|+..||...
T Consensus 79 ------~~~D~af~Gadgvd~~~~~~~~~g~a~~kekiva~~-a~~~ivlaD~sK~~~~ 130 (227)
T 1uj6_A 79 ------EGVDLAIDGADEIAPGLALIKGMGGALLREKIVERV-AKEFIVIADHTKKVPV 130 (227)
T ss_dssp ------TCEEEEEECCSEEEGGGEEECCTTSCHHHHHHHHHT-EEEEEEEEEGGGBCSS
T ss_pred ------CcCCEEEECCCccCccccEECCHHHHHHHHHHHHhc-cCCEEEEEEcchhccc
Confidence 3799999999999999855555566655 456653 3489999999999876
No 11
>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium; 2.09A {Plasmodium falciparum}
Probab=97.86 E-value=3e-05 Score=78.91 Aligned_cols=119 Identities=15% Similarity=0.124 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHH-hccCCCEEEEeCChHHHHHHHHHHHHc---C-C-eeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc
Q 006256 439 LADRVIVKHAVT-KIRDGDVLLTYGSSSAVEMILQHAHEL---G-K-QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (653)
Q Consensus 439 ~a~~~Ia~~a~~-~I~dGdvILT~g~Ss~Ve~vL~~A~e~---g-k-~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~ 512 (653)
...++|++.|++ +|++|++|. .|.+||+..+++...+. + . .++| |+-| ...+.+|.+.||++..+-
T Consensus 11 ~~K~~iA~~Aa~~~I~dg~~Ig-LgsGST~~~~~~~L~~~~~~~~l~~itv-VTnS------~~~a~~l~~~gi~v~~l~ 82 (244)
T 2f8m_A 11 SLKKIVAYKAVDEYVQSNMTIG-LGTGSTVFYVLERIDNLLKSGKLKDVVC-IPTS------IDTELKARKLGIPLTTLE 82 (244)
T ss_dssp HHHHHHHHHHHHHHCCTTCEEE-ECCSTTTHHHHHHHHHHHHHTSSCSCEE-EESS------HHHHHHHHHHTCCBCCCC
T ss_pred HHHHHHHHHHHHHhCCCCCEEE-EcChHHHHHHHHHHhhhhhccCCCCEEE-ECCc------HHHHHHHHHCCCeEEEec
Confidence 366789999999 999999988 66666666777766543 2 1 5665 4433 345667777799887662
Q ss_pred cchHHHHhhhccEEEEcceeEecCCCeecccchHHHHH-HHhhCCCCeeeeccccccc-cc
Q 006256 513 INAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAM-VAYGFHIPVLVCCEAYKFH-ER 571 (653)
Q Consensus 513 DsAv~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl-~Ak~~~VPVyV~aetyKf~-~~ 571 (653)
.+.++|+.|.|||.|-.+++++.--|-+.+-- +.-....-|||+++..||. +.
T Consensus 83 ------~~~~iD~afdGaDeId~~~glikg~g~Al~kekiva~~A~~~ivlaD~SK~~~~~ 137 (244)
T 2f8m_A 83 ------KHSNIDITIDGTDEIDLNLNLIKGRGGALVREKLVASSSSLLIIIGDESKLCTNG 137 (244)
T ss_dssp ------SSCCBSEEEECCSEECTTCCEECCTTSCHHHHHHHHHTBSCEEEEEEGGGBCSSC
T ss_pred ------ccCcCCEEEECCcccCCCCCcccCHHHHHHHHHHHHHhhCcEEEEEECCcccccc
Confidence 33489999999999999977776666655544 2445677899999999998 65
No 12
>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A {Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB: 1lk7_A*
Probab=97.80 E-value=6e-05 Score=75.98 Aligned_cols=118 Identities=15% Similarity=0.149 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCChHHHHHHHHHHHHc---CC--eeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc
Q 006256 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHEL---GK--QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN 514 (653)
Q Consensus 440 a~~~Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~---gk--~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds 514 (653)
..+.|++.|+++|++|++|. .+.|||+..+++...+. +. +++| |+-| ...+.+|.+.||++..+ .
T Consensus 6 ~K~~IA~~Aa~~I~dg~~I~-LdsGST~~~~a~~L~~~~~~~~l~~itv-VTnS------~~~a~~l~~~gi~vi~l--~ 75 (229)
T 1lk5_A 6 MKKIAAKEALKFIEDDMVIG-LGTGSTTAYFIKLLGEKLKRGEISDIVG-VPTS------YQAKLLAIEHDIPIASL--D 75 (229)
T ss_dssp HHHHHHHHHGGGCCTTCEEE-ECCSHHHHHHHHHHHHHHHTTSSCSCEE-EESS------HHHHHHHHHTTCCBCCG--G
T ss_pred HHHHHHHHHHHhCCCCCEEE-EcChHHHHHHHHHHhhhhhhccCCCEEE-ECCc------HHHHHHHHhCCCeEEEe--C
Confidence 45679999999999999998 56666665777766543 21 5666 4433 35567777789887653 2
Q ss_pred hHHHHhhhccEEEEcceeEecCCCeecccchHHHH--HHHhhCCCCeeeecccccccccc
Q 006256 515 AISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVA--MVAYGFHIPVLVCCEAYKFHERV 572 (653)
Q Consensus 515 Av~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lA--l~Ak~~~VPVyV~aetyKf~~~~ 572 (653)
. +.++|+.|+|||.|-.++++..-.|-+.+- +++ ....-+|++|+..||....
T Consensus 76 ~----~~~~D~af~Gadgid~~~g~~~~~~~a~~kekiv~-~~A~~~ivlaD~SK~~~~l 130 (229)
T 1lk5_A 76 Q----VDAIDVAVDGADEVDPNLNLIKGRGAALTMEKIIE-YRAGTFIVLVDERKLVDYL 130 (229)
T ss_dssp G----CSCEEEEEECCSEECTTCCEECCTTSCHHHHHHHH-HTEEEEEEEEEGGGBCSST
T ss_pred C----cccCCEEEECCCeECCCCCeecCHHHHHHHHHHHH-HhcCCeEEEEchhhhhhhc
Confidence 1 147999999999999887665544444433 233 3445899999999998753
No 13
>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase, northeast structural genomics consortium, IR21, structural genomics, PSI; HET: CIT; 1.90A {Haemophilus influenzae} SCOP: c.124.1.4 d.58.40.1
Probab=97.77 E-value=3.7e-05 Score=77.00 Aligned_cols=119 Identities=14% Similarity=0.188 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHH
Q 006256 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYI 519 (653)
Q Consensus 440 a~~~Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~i 519 (653)
..++|++.|+++|++|++|. .+.|||+..+++...+...+++|.|+-| ...+.+|.+.||++..+ ..
T Consensus 6 ~K~~IA~~Aa~~I~dg~~I~-LdsGST~~~la~~L~~~~~~itv~VTnS------~~~a~~l~~~gi~vi~l--~~---- 72 (219)
T 1m0s_A 6 MKKLAAQAALQYVKADRIVG-VGSGSTVNCFIEALGTIKDKIQGAVAAS------KESEELLRKQGIEVFNA--ND---- 72 (219)
T ss_dssp HHHHHHHHHGGGCCTTSEEE-ECCSHHHHHHHHHHHTTGGGSCEEEESS------HHHHHHHHHTTCCBCCG--GG----
T ss_pred HHHHHHHHHHHhCCCCCEEE-EcChHHHHHHHHHHhccCCCEEEEECCh------HHHHHHHHhCCCeEEEe--Cc----
Confidence 45679999999999999998 5666666677777654311577746554 35567777788887653 21
Q ss_pred hhhccEEEEcceeEecCCCeecccchHHHH--HHHhhCCCCeeeecccccccccc
Q 006256 520 IHEVTRVFLGASSVLSNGTVCSRVGTACVA--MVAYGFHIPVLVCCEAYKFHERV 572 (653)
Q Consensus 520 M~~Vd~VllGAdaIlaNG~V~NKiGT~~lA--l~Ak~~~VPVyV~aetyKf~~~~ 572 (653)
+.++|+.|+|||.|-.++++..--|-..+- ++++ ...-+|++++..||....
T Consensus 73 ~~~~D~af~Gadgid~~~g~~~~~~~a~~kekiv~~-~A~~~ivlaD~SK~~~~l 126 (219)
T 1m0s_A 73 VSSLDIYVDGADEINPQKMMIKGGGAALTREKIVAA-LAKKFICIVDSSKQVDVL 126 (219)
T ss_dssp CSCEEEEEECCSEECTTSCEECCTTSCHHHHHHHHH-HEEEEEEEEEGGGBCSST
T ss_pred cccCCEEEECcCeECCCCCeecCHHHHHHHHHHHHH-hcCcEEEEEeCcHHhhcc
Confidence 147999999999999886665543433333 3333 334899999999998753
No 14
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119, center for structu genomics of infectious diseases, csgid; 2.32A {Francisella tularensis subsp}
Probab=97.65 E-value=0.0001 Score=74.15 Aligned_cols=120 Identities=14% Similarity=0.148 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHH
Q 006256 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYI 519 (653)
Q Consensus 440 a~~~Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~i 519 (653)
..+.|++.|+++|++|++|.. |.+||+..+++...+..+++++.|+-| ...+..|.+.||++..+.+
T Consensus 12 ~K~~iA~~A~~~V~~g~~Igl-gsGST~~~~i~~L~~~~~~itv~VtnS------~~~a~~l~~~gi~l~~l~~------ 78 (224)
T 3kwm_A 12 LKKLAATEAAKSITTEITLGV-GTGSTVGFLIEELVNYRDKIKTVVSSS------EDSTRKLKALGFDVVDLNY------ 78 (224)
T ss_dssp HHHHHHHHHHTTCCSSEEEEE-CCSHHHHHHHHHGGGCTTTEEEEEESC------HHHHHHHHHTTCCBCCHHH------
T ss_pred HHHHHHHHHHHhCCCCCEEEE-CCcHHHHHHHHHHHhhcCceEEEECCc------HHHHHHHHHcCCeEEecCc------
Confidence 456789999999999987765 566666577777655445677766655 3456778888998765421
Q ss_pred hhhccEEEEcceeEecCCCeecccchHHHH-HHHhhCCCCeeeecccccccccc
Q 006256 520 IHEVTRVFLGASSVLSNGTVCSRVGTACVA-MVAYGFHIPVLVCCEAYKFHERV 572 (653)
Q Consensus 520 M~~Vd~VllGAdaIlaNG~V~NKiGT~~lA-l~Ak~~~VPVyV~aetyKf~~~~ 572 (653)
..++|+.|.|||.|-.++.++---|...+= =+......-|||+++..||.++.
T Consensus 79 ~~~iD~afdGADevd~~~~liKGgg~al~rEKiva~~A~~~iviaD~sK~~~~L 132 (224)
T 3kwm_A 79 AGEIDLYIDGADECNNHKELIKGGGAALTREKICVAAAKKFICIIDESKKVNTL 132 (224)
T ss_dssp HCSEEEEEECCSEECTTSCEECCSSSCHHHHHHHHHTEEEEEEEEEGGGBCSSB
T ss_pred cccccEEEECCCccccccCeecCchhhHHHHHHHHHhcCcEEEEEeCchhhhhc
Confidence 258999999999999998876644443331 22223445789999999999763
No 15
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, STRU genomics, seattle structural genomics center for infectious; HET: 5RP; 2.30A {Bartonella henselae}
Probab=97.44 E-value=0.00031 Score=71.91 Aligned_cols=119 Identities=17% Similarity=0.133 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCChHHHHHHHHHHHH---cCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchH
Q 006256 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHE---LGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAI 516 (653)
Q Consensus 440 a~~~Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e---~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv 516 (653)
..+.|++.|+++|++|++|.. |.+||+..+++...+ +|.+++| |.-| ...+..|.+.||++..+.+
T Consensus 27 ~K~~iA~~A~~~V~dg~vIgL-GsGST~~~~i~~L~~~~~~gl~Itv-VttS------~~ta~~l~~~GI~l~~l~~--- 95 (255)
T 3hhe_A 27 LKKMAALKALEFVEDDMRLGI-GSGSTVNEFIPLLGERVANGLRVTC-VATS------QYSEQLCHKFGVPISTLEK--- 95 (255)
T ss_dssp HHHHHHHHHHTTCCTTEEEEE-CCSHHHHHHHHHHHHHHHTTCCEEE-EESS------HHHHHHHHHTTCCBCCTTT---
T ss_pred HHHHHHHHHHHhCCCCCEEEE-CCcHHHHHHHHHHHHhhccCCcEEE-EcCC------HHHHHHHHHcCCcEEeccc---
Confidence 345688999999999987665 666666567766544 2334553 3333 3456778888998775432
Q ss_pred HHHhhhccEEEEcceeEecCCCeecccchHHHH-HHHhhCCCCeeeecccccccccc
Q 006256 517 SYIIHEVTRVFLGASSVLSNGTVCSRVGTACVA-MVAYGFHIPVLVCCEAYKFHERV 572 (653)
Q Consensus 517 ~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lA-l~Ak~~~VPVyV~aetyKf~~~~ 572 (653)
+.++|+.|.|||.|-.+..++---|...+= =+......-|||+++..||.++.
T Consensus 96 ---~~~iD~afdGADeVD~~~~lIKGgG~al~rEKiva~~A~~~ivIaD~SK~v~~L 149 (255)
T 3hhe_A 96 ---IPELDLDIDGADEIGPEMTLIKGGGGALLHEKIVASASRAMFVIADETKMVKTL 149 (255)
T ss_dssp ---CCSBSEEEECCSEECGGGCEECCTTSCHHHHHHHHHTBSCEEEEEEGGGBCSSS
T ss_pred ---ccccCEEEECCCccccccCeeeCchhhhHHHHHHHHhcCcEEEEEeCCCChhhh
Confidence 247999999999999987776533332221 22233456799999999999763
No 16
>1xtz_A Ribose-5-phosphate isomerase; yeast; 2.10A {Saccharomyces cerevisiae}
Probab=97.43 E-value=0.00017 Score=74.22 Aligned_cols=118 Identities=18% Similarity=0.164 Sum_probs=82.2
Q ss_pred HHHHHHHHHHH-hcc--CCCEEEEeCChHHHHHHHHHHHHc---CC------eeEEEEeCCCCCchHHHHHHHHHhCCCC
Q 006256 440 ADRVIVKHAVT-KIR--DGDVLLTYGSSSAVEMILQHAHEL---GK------QFRVVIVDSRPKHEGKLLLRRLVRKGLS 507 (653)
Q Consensus 440 a~~~Ia~~a~~-~I~--dGdvILT~g~Ss~Ve~vL~~A~e~---gk------~f~ViV~ESRP~~EG~~La~eL~~~GI~ 507 (653)
..++|++.|++ +|. +|++|. .|.+||+..+++...+. +. +++| |+-| ...+..|.+.||+
T Consensus 21 ~K~~IA~~Aa~~~I~~~dg~~Ig-LgsGST~~~~a~~L~~~~~~~~l~~~~~~itv-VTnS------~~~a~~l~~~gi~ 92 (264)
T 1xtz_A 21 AKRAAAYRAVDENLKFDDHKIIG-IGSGSTVVYVAERIGQYLHDPKFYEVASKFIC-IPTG------FQSRNLILDNKLQ 92 (264)
T ss_dssp HHHHHHHHHHHHHCCTTTCCEEE-ECCCSSTHHHHHHHHHHHTSTTTHHHHTTCEE-EESS------HHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHhccCCCCCCEEE-EcChHHHHHHHHHHhHhhhccccccccCCEEE-ECCc------HHHHHHHHHCCCe
Confidence 45679999998 999 999988 56666555677766543 22 3665 4433 3556777788987
Q ss_pred EEEEccchHHHHhhhccEEEEcceeEecCCCeecccchHHHHH-HHhhCCCCeeeeccccccc-cc
Q 006256 508 CTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAM-VAYGFHIPVLVCCEAYKFH-ER 571 (653)
Q Consensus 508 vT~I~DsAv~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl-~Ak~~~VPVyV~aetyKf~-~~ 571 (653)
+..+ .. +.++|+.|+|||.|-.++.++.--|-+.+-- +......-|||+++..||. ++
T Consensus 93 v~~l--~~----~~~iD~afdGADgId~~~~likg~g~A~~kekiva~~A~~~IvlaD~SK~~~~~ 152 (264)
T 1xtz_A 93 LGSI--EQ----YPRIDIAFDGADEVDENLQLIKGGGACLFQEKLVSTSAKTFIVVADSRKKSPKH 152 (264)
T ss_dssp ECCT--TT----CCSEEEEEECCSEECTTSCEECCTTSCHHHHHHHHTTEEEEEEEEEGGGBCSSS
T ss_pred EEEe--hh----cCcCCEEEECCcccCCCCCeecCHHHHHHHHHHHHHhhCcEEEEEEcccccccc
Confidence 6555 22 2479999999999998876665555544433 2334556899999999999 54
No 17
>1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein ST initiative, MCSG, midwest center for structural genomics; HET: ABF; 1.25A {Escherichia coli} SCOP: c.124.1.4 d.58.40.1 PDB: 1lkz_A 1ks2_A* 3enq_A 3env_A* 3enw_A*
Probab=97.36 E-value=4e-05 Score=76.78 Aligned_cols=118 Identities=14% Similarity=0.143 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHH
Q 006256 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYI 519 (653)
Q Consensus 440 a~~~Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~i 519 (653)
..++|++.|+++|++|++|.. +.|||+..+++...+...+++|.|+-|-+ .+.+|.+.||++..+ +.
T Consensus 6 ~K~~IA~~Aa~lI~dg~~I~L-dsGST~~~la~~L~~~~~~itv~VTnS~~------~a~~l~~~gi~vi~l--~~---- 72 (219)
T 1o8b_A 6 LKKAVGWAALQYVQPGTIVGV-GTGSTAAHFIDALGTMKGQIEGAVSSSDA------STEKLKSLGIHVFDL--NE---- 72 (219)
T ss_dssp -----------------CEEE-CCSCC---------------CCEEESCCC------------------CCG--GG----
T ss_pred HHHHHHHHHHHhCCCCCEEEE-cChHHHHHHHHHHhccCCCEEEEECCcHH------HHHHHHhCCCeEEEe--Cc----
Confidence 446799999999999999984 55555546666664332156664666643 244555567765443 22
Q ss_pred hhhccEEEEcceeEecCCCeecccchHHHH--HHHhhCCCCeeeeccccccccc
Q 006256 520 IHEVTRVFLGASSVLSNGTVCSRVGTACVA--MVAYGFHIPVLVCCEAYKFHER 571 (653)
Q Consensus 520 M~~Vd~VllGAdaIlaNG~V~NKiGT~~lA--l~Ak~~~VPVyV~aetyKf~~~ 571 (653)
+.++|+.|+|||.|-.++.+..--|-+.+- ++++ ...-+|++++..||...
T Consensus 73 ~~~~D~af~Gadgid~~~~~~~~~~~a~~kekiv~~-~A~~~ivlaD~SK~~~~ 125 (219)
T 1o8b_A 73 VDSLGIYVDGADEINGHMQMIKGGGAALTREKIIAS-VAEKFICIADASKQVDI 125 (219)
T ss_dssp CSCEEEEEECCSEECTTSCEECCCCC-HHHHHHHHH-HEEEEEEEEEGGGBCSS
T ss_pred cCcCCEEEECcceECCCCCeecCHHHHHHHHHHHHH-hcCcEEEEEeCcccccc
Confidence 247999999999999887766433444433 3333 33389999999999876
No 18
>3l7o_A Ribose-5-phosphate isomerase A; RPIA; 1.70A {Streptococcus mutans}
Probab=97.20 E-value=0.00072 Score=68.02 Aligned_cols=118 Identities=15% Similarity=0.124 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCChHHHHHHHHHHHHc----CCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccch
Q 006256 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHEL----GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA 515 (653)
Q Consensus 440 a~~~Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~----gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsA 515 (653)
..+.|++.|+++|++|++|.. |.+||+..+++...+. +.++++ |.-| .+.+..|.+.||++..+.+
T Consensus 4 ~K~~iA~~A~~~V~dg~vIgL-GsGST~~~~i~~L~~~~~~~~~~i~~-VttS------~~t~~~l~~~Gi~l~~l~~-- 73 (225)
T 3l7o_A 4 LKKIAGVRAAQYVEDGMIVGL-GTGSTAYYFVEEVGRRVQEEGLQVIG-VTTS------SRTTAQAQALGIPLKSIDE-- 73 (225)
T ss_dssp HHHHHHHHHHTTCCTTCEEEE-CCSTTHHHHHHHHHHHHHHHCCCCEE-EESS------HHHHHHHHHHTCCBCCGGG--
T ss_pred HHHHHHHHHHHhCCCCCEEEE-CCcHHHHHHHHHHHHhhhhcCCCEEE-EcCC------HHHHHHHhccCceEEecCc--
Confidence 345789999999999998776 4444444666665443 556666 4433 3445677778998865432
Q ss_pred HHHHhhhccEEEEcceeEecCCCeecccchHHH--HHHHhhCCCCeeeecccccccccc
Q 006256 516 ISYIIHEVTRVFLGASSVLSNGTVCSRVGTACV--AMVAYGFHIPVLVCCEAYKFHERV 572 (653)
Q Consensus 516 v~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~l--Al~Ak~~~VPVyV~aetyKf~~~~ 572 (653)
..++|+.|.|||.|-.+..++---|.+.+ -++| ....-|||+++..||.++.
T Consensus 74 ----~~~iD~a~dGADevd~~~~liKGgG~al~rEKiva-~~A~~~iviaD~sK~~~~L 127 (225)
T 3l7o_A 74 ----VDSVDVTVDGADEVDPNFNGIKGGGGALLMEKIVG-TLTKDYIWVVDESKMVDTL 127 (225)
T ss_dssp ----SSCEEEEEECCSEECTTSCEECCTTSCHHHHHHHH-HTEEEEEEEEEGGGBCSSS
T ss_pred ----ccccCEEEEcCCccCcccCeecCchhhhHHHHHHH-HhCCeEEEEEecccchhhc
Confidence 34899999999999999887664444333 2222 2345689999999998763
No 19
>2pjm_A Ribose-5-phosphate isomerase A; 3D-structure, structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; 1.78A {Methanocaldococcus jannaschii} PDB: 3ixq_A*
Probab=97.17 E-value=0.0017 Score=65.43 Aligned_cols=118 Identities=15% Similarity=0.084 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCChHHHHHHHHHHHHc----CCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccch
Q 006256 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHEL----GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA 515 (653)
Q Consensus 440 a~~~Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~----gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsA 515 (653)
..+.|++.|+++|++|++|.. +.|||+..+++...+. +.+++| |+-| ...+..|.+.||++.-+ +.
T Consensus 6 ~K~~iA~~A~~~I~~g~~Igl-gsGST~~~~~~~L~~~~~~~~l~itv-VtnS------~~~a~~l~~~gi~v~~l--~~ 75 (226)
T 2pjm_A 6 LKLKVAKEAVKLVKDGMVIGL-GTGSTAALFIRELGNRIREEELTVFG-IPTS------FEAKMLAMQYEIPLVTL--DE 75 (226)
T ss_dssp HHHHHHHHHGGGCCTTCEEEE-CCSHHHHHHHHHHHHHHHHHTCCCEE-EESS------HHHHHHHHHTTCCBCCT--TT
T ss_pred HHHHHHHHHHHHCCCCCEEEE-CCCHHHHHHHHHHHhhhhccCCcEEE-EeCc------HHHHHHHHhcCCeEEee--cc
Confidence 446799999999999998776 4455544666665432 335554 3333 34556788899987632 21
Q ss_pred HHHHhhhccEEEEcceeEecC-CCeecccchHHH-HHHHhhCCCCeeeecccccccccc
Q 006256 516 ISYIIHEVTRVFLGASSVLSN-GTVCSRVGTACV-AMVAYGFHIPVLVCCEAYKFHERV 572 (653)
Q Consensus 516 v~~iM~~Vd~VllGAdaIlaN-G~V~NKiGT~~l-Al~Ak~~~VPVyV~aetyKf~~~~ 572 (653)
+. +|+.|.|||.|-.+ +.++---|...+ --+-.....-|||+++..||.++.
T Consensus 76 ----~~-iD~afdGaDevd~~t~~likGgg~al~rEKiva~~A~~~IviaD~sK~~~~L 129 (226)
T 2pjm_A 76 ----YD-VDIAFDGADEVEETTLFLIKGGGGCHTQEKIVDYNANEFVVLVDESKLVKKL 129 (226)
T ss_dssp ----CC-CSEEEECCSEEETTTCCEECCTTSCHHHHHHHHHHSSEEEEEEEGGGEESST
T ss_pred ----cc-CCEEEEcCceeccccCceeeccchhhHHHHHHHHHhCcEEEEEecchhhhcc
Confidence 33 99999999999999 766554443322 112223345789999999999764
No 20
>3uw1_A Ribose-5-phosphate isomerase A; ssgcid, seattle structural genomics center for infectious DI isomerase, ribose isomerase; HET: R5P; 1.71A {Burkholderia thailandensis} PDB: 3u7j_A*
Probab=96.74 E-value=0.0029 Score=64.20 Aligned_cols=119 Identities=17% Similarity=0.204 Sum_probs=79.4
Q ss_pred HHHHHHHHHHhccC----CCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchH
Q 006256 441 DRVIVKHAVTKIRD----GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAI 516 (653)
Q Consensus 441 ~~~Ia~~a~~~I~d----GdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv 516 (653)
.+.|++.|+++|++ |++|-. |.+||+..++++..+..++++.+|.-| ...+..|.+.||++..+.+
T Consensus 15 K~~aA~~A~~~V~d~~~~g~vIGL-GtGST~~~~i~~L~~~~~~i~~~V~tS------~~t~~~~~~~Gi~l~~l~~--- 84 (239)
T 3uw1_A 15 KRLVGEAAARYVTDNVPQGAVIGV-GTGSTANCFIDALAAVKDRYRGAVSSS------VATTERLKSHGIRVFDLNE--- 84 (239)
T ss_dssp HHHHHHHHHHHHHHHSCTTCEEEE-CCSHHHHHHHHHHHTTGGGSCEEEESS------HHHHHHHHHTTCCBCCGGG---
T ss_pred HHHHHHHHHHHhhccCcCCCEEEE-CccHHHHHHHHHHHhhhccceEEeCCc------HHHHHHHHHcCCcEEeccc---
Confidence 34577778888887 887665 666666677777765434565445443 3556778889998864322
Q ss_pred HHHhhhccEEEEcceeEecCCCeecccchHHHH-HHHhhCCCCeeeecccccccccc
Q 006256 517 SYIIHEVTRVFLGASSVLSNGTVCSRVGTACVA-MVAYGFHIPVLVCCEAYKFHERV 572 (653)
Q Consensus 517 ~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lA-l~Ak~~~VPVyV~aetyKf~~~~ 572 (653)
..++|+.|.|||-|-.|+.++--=|.+.+= =+......-|||+++..||.++.
T Consensus 85 ---~~~iD~a~DGADeVd~~l~lIKGgGgal~rEKiva~~A~~~ivIaD~sK~v~~L 138 (239)
T 3uw1_A 85 ---IESLQVYVDGADEIDESGAMIKGGGGALTREKIVASVAETFVCIADASKRVAML 138 (239)
T ss_dssp ---CSCEEEEEECCSEECTTCCEECCSSSCHHHHHHHHHHEEEEEEEEEGGGBCSSB
T ss_pred ---ccccCEEEECCcccCcccCEecCchHHHHHHHHHHHhCCcEEEEEecchhhhhc
Confidence 247999999999999998776633332211 11122234689999999998753
No 21
>4gmk_A Ribose-5-phosphate isomerase A; D-ribose-5-phosphate isomerase family, ribose 5-phosphate isomerisation; 1.72A {Lactobacillus salivarius}
Probab=91.65 E-value=0.46 Score=47.84 Aligned_cols=114 Identities=18% Similarity=0.176 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCChHHHHHHHHHHHH----cCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccch
Q 006256 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHE----LGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA 515 (653)
Q Consensus 440 a~~~Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e----~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsA 515 (653)
..+..++.|+++|++|. |+=.|.+||+..++.+..+ .+. .+.++-| ..+....+.+.||++.-+.+
T Consensus 7 ~K~~aa~~A~~~V~~gm-vvGlGTGSTv~~~i~~L~~~~~~~~l--~i~~V~t-----S~~t~~~a~~~Gi~l~~l~~-- 76 (228)
T 4gmk_A 7 LKQLVGTKAVEWIKDGM-IVGLGTGSTVKYMVDALGKRVNEEGL--DIVGVTT-----SIRTAEQAKSLGIVIKDIDE-- 76 (228)
T ss_dssp HHHHHHHHHGGGCCTTC-EEEECCSHHHHHHHHHHHHHHHHHCC--CCEEEES-----SHHHHHHHHHTTCCBCCGGG--
T ss_pred HHHHHHHHHHHhCCCCC-EEEECchHHHHHHHHHHHHHHhhcCC--cEEEEeC-----cHHHHHHHHHcCCceeChHH--
Confidence 44567888999999987 5567777777777776644 233 3333322 23445667778999876554
Q ss_pred HHHHhhhccEEEEcceeEecCCCeecccchH-----HHHHHHhhCCCCeeeeccccccccc
Q 006256 516 ISYIIHEVTRVFLGASSVLSNGTVCSRVGTA-----CVAMVAYGFHIPVLVCCEAYKFHER 571 (653)
Q Consensus 516 v~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~-----~lAl~Ak~~~VPVyV~aetyKf~~~ 571 (653)
..++|..|=|||-|-.|..++--=|.+ .+|.+|++ |+|+++..|+.++
T Consensus 77 ----~~~iD~~iDGADEvd~~l~lIKGGGgal~rEKivA~~a~~----fI~IaD~sK~v~~ 129 (228)
T 4gmk_A 77 ----VDHIDLTIDGADEISSDFQGIKGGGAALLYEKIVATKSNK----NMWIVDESKMVDD 129 (228)
T ss_dssp ----SSCEEEEEECCSEECTTSCEECCTTSCHHHHHHHHHHEEE----EEEEEEGGGBCSS
T ss_pred ----CCccceEeccHHHhhhchhhhhcchHHHHHHHHHHHhhhh----eEEEeccccccCc
Confidence 247999999999999998877555533 34555554 7999999999876
No 22
>3ixq_A Ribose-5-phosphate isomerase A; structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; HET: PGO; 1.78A {Methanocaldococcus jannaschii}
Probab=87.58 E-value=1.2 Score=44.73 Aligned_cols=117 Identities=15% Similarity=0.135 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhccCCCEEEEeCChHHHHHHHHHHHHcC--CeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHH
Q 006256 441 DRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELG--KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISY 518 (653)
Q Consensus 441 ~~~Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~g--k~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~ 518 (653)
.+..++.|+++|++|. |+=.|.+||+..++.+..++. ....|+.+.|. .+....+.+.||+++.+.+ +
T Consensus 7 K~~aa~~A~~~V~~gm-vvGlGTGSTv~~~I~~L~~~~~~~~l~i~~v~tS-----~~t~~~a~~~gi~l~~l~~--~-- 76 (226)
T 3ixq_A 7 KLKVAKEAVKLVKDGM-VIGLGTGSTAALFIRELGNRIREEELTVFGIPTS-----FEAKMLAMQYEIPLVTLDE--Y-- 76 (226)
T ss_dssp HHHHHHHHGGGCCTTC-EEEECCSHHHHHHHHHHHHHHHHHTCCCEEEESS-----HHHHHHHHHTTCCBCCTTT--C--
T ss_pred HHHHHHHHHHhCCCCC-EEEeCcHHHHHHHHHHHHHhhhhcCCeeEeeccc-----HHHHHHHHhcCCCcccccc--c--
Confidence 3457788999999987 556788888878887765421 12345544442 2333456678998765533 1
Q ss_pred HhhhccEEEEcceeEecCC-CeecccchHHHH--HHHhhCCCCeeeeccccccccc
Q 006256 519 IIHEVTRVFLGASSVLSNG-TVCSRVGTACVA--MVAYGFHIPVLVCCEAYKFHER 571 (653)
Q Consensus 519 iM~~Vd~VllGAdaIlaNG-~V~NKiGT~~lA--l~Ak~~~VPVyV~aetyKf~~~ 571 (653)
.+|..|=|||-|-..+ .++--=|.+.+= ++| ....-|+|+++..|+.+.
T Consensus 77 ---~iDl~iDGADEvd~~~l~lIKGGGgAl~rEKivA-~~a~~~I~I~D~sK~v~~ 128 (226)
T 3ixq_A 77 ---DVDIAFDGADEVEETTLFLIKGGGGCHTQEKIVD-YNANEFVVLVDESKLVKK 128 (226)
T ss_dssp ---CCSEEEECCSEEETTTCCEECCTTSCHHHHHHHH-HHSSEEEEEEEGGGEESS
T ss_pred ---cccEEEeCcchhccccceEEecchHHHHHHHHHH-HHhhheEEEeccccchhh
Confidence 3899999999997433 333333332211 122 234567999999999875
No 23
>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein., structural genomics, PSI-2, protein STR initiative; HET: CIT; 2.70A {Streptococcus mutans}
Probab=81.37 E-value=12 Score=41.62 Aligned_cols=113 Identities=22% Similarity=0.208 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHhc------cCCCEEEEeCCh---HHHHHHHHHH-HHcCCeeEE---EEeCCCCCchHHHHHHHHHhCCC
Q 006256 440 ADRVIVKHAVTKI------RDGDVLLTYGSS---SAVEMILQHA-HELGKQFRV---VIVDSRPKHEGKLLLRRLVRKGL 506 (653)
Q Consensus 440 a~~~Ia~~a~~~I------~dGdvILT~g~S---s~Ve~vL~~A-~e~gk~f~V---iV~ESRP~~EG~~La~eL~~~GI 506 (653)
..+.|+++++++| +||.+| =.|-+ .+|...|..- .+.+-.-.+ -+.+ -...|.+.|.
T Consensus 252 ~~~~IA~~~a~~i~~~g~l~dG~~l-qlGiG~ip~aV~~~L~~~~~~l~i~se~g~~g~~~---------~~~~lieaG~ 321 (519)
T 2hj0_A 252 KELLIAEYAAKVITSSPYYKEGFSF-QTGTGGASLAVTRFMREQMIKDDIKANFALGGITN---------AMVELLEEGL 321 (519)
T ss_dssp HHHHHHHHHHHHHHTSTTCSTTCEE-ECCSSHHHHHHHHHHHHHHHHSCCCEEEECSEECH---------HHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhcccCCCCCEE-EeccChHHHHHHHHHhhhcccceeeeceeccCcCh---------hHHHHHHCCC
Confidence 3456888888886 898544 44544 4566666554 333333232 1111 1345555553
Q ss_pred CE-E--------------------EEccchHHH--------HhhhccEEEEcceeEecCCCeeccc-----------chH
Q 006256 507 SC-T--------------------YTHINAISY--------IIHEVTRVFLGASSVLSNGTVCSRV-----------GTA 546 (653)
Q Consensus 507 ~v-T--------------------~I~DsAv~~--------iM~~Vd~VllGAdaIlaNG~V~NKi-----------GT~ 546 (653)
-- + .+.++...| ++.+.|..|+||=-|-.+|.+.|-. |..
T Consensus 322 i~~~~~~~~f~~G~~~~~~~n~~~~~~~~~~~~~n~~n~p~~i~~ldv~ilga~eVD~~Gnvn~~~~~gg~~~~G~GG~~ 401 (519)
T 2hj0_A 322 VDKILDVQDFDHPSAVSLDRNAEKHYEIDANMYASPLSKGSVINQLDICVLSALEVDTNFNVNVMTGSDGVIRGASGGHC 401 (519)
T ss_dssp EEEEEESEESSHHHHHHHHHTTTTEEECCHHHHHCSSSSCCGGGGCSEEEECCSEECTTCCEECSBCTTCCBCCBCTTHH
T ss_pred CCCCccccccccchHHHHHhCcHhhEEEchHHhhccCCCHHHhccCCeeeeeeEEEccCCceeeeeccCCeEecccccHH
Confidence 22 1 233444555 4668999999999999999888766 233
Q ss_pred HHHHHHhhCCCCeeeecccc
Q 006256 547 CVAMVAYGFHIPVLVCCEAY 566 (653)
Q Consensus 547 ~lAl~Ak~~~VPVyV~aety 566 (653)
-++.-|+. +++++++.
T Consensus 402 D~~~gA~~----~ii~~~~t 417 (519)
T 2hj0_A 402 DTAFAAKM----SLVISPLV 417 (519)
T ss_dssp HHHHHSSE----EEEECCSE
T ss_pred HHhhccCe----EEEEEccc
Confidence 44555553 66777654
No 24
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=79.08 E-value=19 Score=31.13 Aligned_cols=60 Identities=27% Similarity=0.278 Sum_probs=35.8
Q ss_pred HHHHhCCCCE---EEE-c-cchHHHHh---h--hccEEEEcceeEecCCCeec-ccchHHHHHHHhhCCCCeeee
Q 006256 499 RRLVRKGLSC---TYT-H-INAISYII---H--EVTRVFLGASSVLSNGTVCS-RVGTACVAMVAYGFHIPVLVC 562 (653)
Q Consensus 499 ~eL~~~GI~v---T~I-~-DsAv~~iM---~--~Vd~VllGAdaIlaNG~V~N-KiGT~~lAl~Ak~~~VPVyV~ 562 (653)
..+.+.|+++ +.. . .+....++ . ++|+|++|++. .|.+-. -.|+..-. +.++.++||+|+
T Consensus 77 ~~~~~~g~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~---~~~~~~~~~Gs~~~~-vl~~~~~pVlvV 147 (147)
T 3hgm_A 77 TRATELGVPADKVRAFVKGGRPSRTIVRFARKRECDLVVIGAQG---TNGDKSLLLGSVAQR-VAGSAHCPVLVV 147 (147)
T ss_dssp HHHHHTTCCGGGEEEEEEESCHHHHHHHHHHHTTCSEEEECSSC---TTCCSCCCCCHHHHH-HHHHCSSCEEEC
T ss_pred HHHHhcCCCccceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCC---CccccceeeccHHHH-HHhhCCCCEEEC
Confidence 4456689887 432 2 23333333 3 69999999975 233333 24665444 455667999985
No 25
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=78.32 E-value=5.7 Score=40.35 Aligned_cols=101 Identities=15% Similarity=0.118 Sum_probs=64.5
Q ss_pred CEEEEeCChHHHHHHH-HHHHHcCCeeEEEEeCCCC--CchHHHHHHHHHhCCCCEEEEcc---chHHHHhhhccEEEEc
Q 006256 456 DVLLTYGSSSAVEMIL-QHAHELGKQFRVVIVDSRP--KHEGKLLLRRLVRKGLSCTYTHI---NAISYIIHEVTRVFLG 529 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL-~~A~e~gk~f~ViV~ESRP--~~EG~~La~eL~~~GI~vT~I~D---sAv~~iM~~Vd~VllG 529 (653)
.+||..|-+..+...| +.+.+.| ++|+++.-.+ ..+-......|...|+.+..... ..+..++.+. |
T Consensus 11 ~~IlVtGatG~iG~~l~~~L~~~g--~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~-----~ 83 (346)
T 3i6i_A 11 GRVLIAGATGFIGQFVATASLDAH--RPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEH-----E 83 (346)
T ss_dssp CCEEEECTTSHHHHHHHHHHHHTT--CCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHT-----T
T ss_pred CeEEEECCCcHHHHHHHHHHHHCC--CCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhC-----C
Confidence 4688888765554433 4444556 4566665444 22334445677788887655432 3455566621 4
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCC-CCeeeec
Q 006256 530 ASSVLSNGTVCSRVGTACVAMVAYGFH-IPVLVCC 563 (653)
Q Consensus 530 AdaIlaNG~V~NKiGT~~lAl~Ak~~~-VPVyV~a 563 (653)
+|.|+.+.+..|-.|+..+.-+|+..+ ++.+|.+
T Consensus 84 ~d~Vi~~a~~~n~~~~~~l~~aa~~~g~v~~~v~S 118 (346)
T 3i6i_A 84 IDIVVSTVGGESILDQIALVKAMKAVGTIKRFLPS 118 (346)
T ss_dssp CCEEEECCCGGGGGGHHHHHHHHHHHCCCSEEECS
T ss_pred CCEEEECCchhhHHHHHHHHHHHHHcCCceEEeec
Confidence 555555556679999999999999999 9988864
No 26
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=77.85 E-value=12 Score=38.75 Aligned_cols=104 Identities=9% Similarity=0.056 Sum_probs=57.9
Q ss_pred cCCCEEEEeCChHHHHHHHHHHH--HcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc---------hHHHHh-
Q 006256 453 RDGDVLLTYGSSSAVEMILQHAH--ELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---------AISYII- 520 (653)
Q Consensus 453 ~dGdvILT~g~Ss~Ve~vL~~A~--e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds---------Av~~iM- 520 (653)
....+++|-|.+.++..++..+. +.|...+|++. .|.+.+...+ +...|+.+..+... .+-..+
T Consensus 104 ~~~~i~~t~g~t~al~~~~~~l~~~~~gd~~~Vl~~--~p~~~~~~~~--~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~ 179 (437)
T 3g0t_A 104 PARACVPTVGSMQGCFVSFLVANRTHKNREYGTLFI--DPGFNLNKLQ--CRILGQKFESFDLFEYRGEKLREKLESYLQ 179 (437)
T ss_dssp CGGGEEEESHHHHHHHHHHHHHTTSCTTCSCCEEEE--ESCCHHHHHH--HHHHTCCCEEEEGGGGCTTHHHHHHHHHHT
T ss_pred CcccEEEeCCHHHHHHHHHHHHhcCCCCCccEEEEe--CCCcHhHHHH--HHHcCCEEEEEeecCCCCccCHHHHHHHHh
Confidence 34577888887778866666654 44442256655 4666665433 33468888777532 222333
Q ss_pred -hhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 521 -HEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 521 -~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
.++.+|++ +.---..|.++..---..++-+|++|++.+++
T Consensus 180 ~~~~~~v~l-~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~ 220 (437)
T 3g0t_A 180 TGQFCSIIY-SNPNNPTWQCMTDEELRIIGELATKHDVIVIE 220 (437)
T ss_dssp TTCCCEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred cCCceEEEE-eCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEE
Confidence 23555655 22212234333332233467789999998776
No 27
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=77.03 E-value=19 Score=29.82 Aligned_cols=98 Identities=15% Similarity=0.071 Sum_probs=61.4
Q ss_pred CCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc---chHHHHhhhccEEEEcce
Q 006256 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---NAISYIIHEVTRVFLGAS 531 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D---sAv~~iM~~Vd~VllGAd 531 (653)
+..|+..|.+..=..+++.+.+.| .++|++++-.+. -+..+...|+....... ..+..++..+|.||..+
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~~~g-~~~v~~~~r~~~-----~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~- 77 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLKTSS-NYSVTVADHDLA-----ALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAA- 77 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCS-SEEEEEEESCHH-----HHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECS-
T ss_pred cCeEEEECCCHHHHHHHHHHHhCC-CceEEEEeCCHH-----HHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECC-
Confidence 457888888654444455555555 367887775432 12344466766543322 34555667788887665
Q ss_pred eEecCCCeecccchHHHHHHHhhCCCCeeeecccccc
Q 006256 532 SVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKF 568 (653)
Q Consensus 532 aIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~aetyKf 568 (653)
| ...+..++..|...+++++.++....+
T Consensus 78 -----~----~~~~~~~~~~~~~~g~~~~~~~~~~~~ 105 (118)
T 3ic5_A 78 -----P----FFLTPIIAKAAKAAGAHYFDLTEDVAA 105 (118)
T ss_dssp -----C----GGGHHHHHHHHHHTTCEEECCCSCHHH
T ss_pred -----C----chhhHHHHHHHHHhCCCEEEecCcHHH
Confidence 1 123678888999999999988765543
No 28
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=76.35 E-value=23 Score=30.65 Aligned_cols=59 Identities=15% Similarity=0.077 Sum_probs=34.8
Q ss_pred HHHhCCC-CEEEE--ccchHHHHhh------hccEEEEcceeEecCCCeec-ccchHHHHHHHhhCCCCeeee
Q 006256 500 RLVRKGL-SCTYT--HINAISYIIH------EVTRVFLGASSVLSNGTVCS-RVGTACVAMVAYGFHIPVLVC 562 (653)
Q Consensus 500 eL~~~GI-~vT~I--~DsAv~~iM~------~Vd~VllGAdaIlaNG~V~N-KiGT~~lAl~Ak~~~VPVyV~ 562 (653)
.+.+.|+ +++.. .......++. ++|+|++|++.- |.+-. -.|+..-.+ .++.++||+|+
T Consensus 77 ~~~~~g~~~~~~~~~~g~~~~~I~~~~a~~~~~dliV~G~~~~---~~~~~~~~Gs~~~~v-l~~~~~pVlvV 145 (146)
T 3s3t_A 77 FVATTSAPNLKTEISYGIPKHTIEDYAKQHPEIDLIVLGATGT---NSPHRVAVGSTTSYV-VDHAPCNVIVI 145 (146)
T ss_dssp HHTTSSCCCCEEEEEEECHHHHHHHHHHHSTTCCEEEEESCCS---SCTTTCSSCHHHHHH-HHHCSSEEEEE
T ss_pred HHHhcCCcceEEEEecCChHHHHHHHHHhhcCCCEEEECCCCC---CCcceEEEcchHHHH-hccCCCCEEEe
Confidence 4455788 76543 2223333332 699999999752 22222 256654444 56667999986
No 29
>1poi_B Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} SCOP: c.124.1.3
Probab=76.14 E-value=11 Score=38.30 Aligned_cols=93 Identities=15% Similarity=0.234 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhccCCCEEEE-eCChHHHHHHHHHHHHcCCeeEEEE----eCCCCCc---hHHHHHHHHHhCCCCEEEEc
Q 006256 441 DRVIVKHAVTKIRDGDVLLT-YGSSSAVEMILQHAHELGKQFRVVI----VDSRPKH---EGKLLLRRLVRKGLSCTYTH 512 (653)
Q Consensus 441 ~~~Ia~~a~~~I~dGdvILT-~g~Ss~Ve~vL~~A~e~gk~f~ViV----~ESRP~~---EG~~La~eL~~~GI~vT~I~ 512 (653)
.+.|+.++++.|+||++|-+ +|-..+|..++...+ ++.+.+.. +...|.. .+.. ..|.. .+..+.
T Consensus 8 ~e~Ia~~aA~~i~dG~~v~lGiGiP~~va~~~~~~~--~~~l~l~~E~G~lg~~p~~~~~~~~d--~~~~~---~a~~~~ 80 (260)
T 1poi_B 8 KEMQAVTIAKQIKNGQVVTVGTGLPLIGASVAKRVY--APDCHIIVESGLMDCSPVEVPRSVGD--LRFMA---HCGCIW 80 (260)
T ss_dssp HHHHHHHHHTTCCTTCEEECCSSHHHHHHHHHHHTT--CTTCEEEETTTEEEECCSSCCSSTTC--HHHHT---SEEEEC
T ss_pred HHHHHHHHHHhCCCCCEEEeCCCHHHHHHHHHHHhc--CCCEEEEEeCceecCcccCcccCccC--CCcEe---ehhhhc
Confidence 45799999999999987665 232334544444322 34444442 2223421 1110 11111 244566
Q ss_pred cchHHHH------hh--hccEEEEcceeEecCCCee
Q 006256 513 INAISYI------IH--EVTRVFLGASSVLSNGTVC 540 (653)
Q Consensus 513 DsAv~~i------M~--~Vd~VllGAdaIlaNG~V~ 540 (653)
++.-.|- +. ++|..|+||--|-.+|.+.
T Consensus 81 ~~~~~fd~~~~~~~~~g~~Dv~ilGa~qVD~~Gnvn 116 (260)
T 1poi_B 81 PNVRFVGFEINEYLHKANRLIAFIGGAQIDPYGNVN 116 (260)
T ss_dssp CHHHHHHHHHHHHHHTCCCEEEEECCSEECTTCCEE
T ss_pred CHHHHhcccchhhhhcCCccEEEeChHHhCCCCCcc
Confidence 6654433 33 6999999999999999998
No 30
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=75.56 E-value=19 Score=33.10 Aligned_cols=84 Identities=7% Similarity=0.034 Sum_probs=50.4
Q ss_pred HHHHHhccCCCEEEEeCChH--HHHHHHHH-HHHcCCee----------------EEEEeCCCCCchHHHHHHHHHhCCC
Q 006256 446 KHAVTKIRDGDVLLTYGSSS--AVEMILQH-AHELGKQF----------------RVVIVDSRPKHEGKLLLRRLVRKGL 506 (653)
Q Consensus 446 ~~a~~~I~dGdvILT~g~Ss--~Ve~vL~~-A~e~gk~f----------------~ViV~ESRP~~EG~~La~eL~~~GI 506 (653)
+.+++.|.+...|..+|.+. .+...+.. ...-|+.. -+++.-|+-..+-.++++.+.+.|+
T Consensus 31 ~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vi~iS~sG~t~~~~~~~~~ak~~g~ 110 (180)
T 1jeo_A 31 DSLIDRIIKAKKIFIFGVGRSGYIGRCFAMRLMHLGFKSYFVGETTTPSYEKDDLLILISGSGRTESVLTVAKKAKNINN 110 (180)
T ss_dssp HHHHHHHHHCSSEEEECCHHHHHHHHHHHHHHHHTTCCEEETTSTTCCCCCTTCEEEEEESSSCCHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHhCCEEEEEeecHHHHHHHHHHHHHHHcCCeEEEeCCCccccCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCC
Confidence 44555666677899998764 23222222 22233321 1222233333345566788999999
Q ss_pred CEEEEccchHHHHhhhccEEEEcc
Q 006256 507 SCTYTHINAISYIIHEVTRVFLGA 530 (653)
Q Consensus 507 ~vT~I~DsAv~~iM~~Vd~VllGA 530 (653)
++..|+++.-+ +.+.+|.+|.-.
T Consensus 111 ~vi~IT~~~~s-l~~~ad~~l~~~ 133 (180)
T 1jeo_A 111 NIIAIVCECGN-VVEFADLTIPLE 133 (180)
T ss_dssp CEEEEESSCCG-GGGGCSEEEECC
T ss_pred cEEEEeCCCCh-HHHhCCEEEEeC
Confidence 99999997766 667789887643
No 31
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=74.70 E-value=23 Score=33.50 Aligned_cols=83 Identities=12% Similarity=0.063 Sum_probs=51.4
Q ss_pred HHHHHhccCCCEEEEeCChH--HHHHHH-HHHHHcCCeeE----------------EEEeCCCCCchHHHHHHHHHhCCC
Q 006256 446 KHAVTKIRDGDVLLTYGSSS--AVEMIL-QHAHELGKQFR----------------VVIVDSRPKHEGKLLLRRLVRKGL 506 (653)
Q Consensus 446 ~~a~~~I~dGdvILT~g~Ss--~Ve~vL-~~A~e~gk~f~----------------ViV~ESRP~~EG~~La~eL~~~GI 506 (653)
+.+++.|.+...|..+|.++ .+...+ .....-|+... +++.-|+-..+-.++++.+.+.|+
T Consensus 38 ~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~ 117 (200)
T 1vim_A 38 GEMIKLIDSARSIFVIGAGRSGYIAKAFAMRLMHLGYTVYVVGETVTPRITDQDVLVGISGSGETTSVVNISKKAKDIGS 117 (200)
T ss_dssp HHHHHHHHHSSCEEEECSHHHHHHHHHHHHHHHHTTCCEEETTSTTCCCCCTTCEEEEECSSSCCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhcCCEEEEEEecHHHHHHHHHHHHHHhcCCeEEEeCCccccCCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCC
Confidence 44555666677888898754 232222 22222333211 112222223345667788899999
Q ss_pred CEEEEccchHHHHhhhccEEEE
Q 006256 507 SCTYTHINAISYIIHEVTRVFL 528 (653)
Q Consensus 507 ~vT~I~DsAv~~iM~~Vd~Vll 528 (653)
++..|+++.-+.+.+.+|.+|.
T Consensus 118 ~vI~IT~~~~s~La~~ad~~l~ 139 (200)
T 1vim_A 118 KLVAVTGKRDSSLAKMADVVMV 139 (200)
T ss_dssp EEEEEESCTTSHHHHHCSEEEE
T ss_pred eEEEEECCCCChHHHhCCEEEE
Confidence 9999999887788888999886
No 32
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=72.95 E-value=25 Score=32.49 Aligned_cols=83 Identities=12% Similarity=0.006 Sum_probs=49.5
Q ss_pred HHHHHhccCCCEEEEeCChH--HHHHHHH-HHHHcCCee---------------EEE-EeCCCCCchHHHHHHHHHhCCC
Q 006256 446 KHAVTKIRDGDVLLTYGSSS--AVEMILQ-HAHELGKQF---------------RVV-IVDSRPKHEGKLLLRRLVRKGL 506 (653)
Q Consensus 446 ~~a~~~I~dGdvILT~g~Ss--~Ve~vL~-~A~e~gk~f---------------~Vi-V~ESRP~~EG~~La~eL~~~GI 506 (653)
+.++++|.+...|..+|.+. .+...+. ...+-|+.. -|| +.-|+-..+-.++++.+.+.|+
T Consensus 28 ~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vI~iS~sG~t~~~~~~~~~ak~~g~ 107 (186)
T 1m3s_A 28 DQLADHILSSHQIFTAGAGRSGLMAKSFAMRLMHMGFNAHIVGEILTPPLAEGDLVIIGSGSGETKSLIHTAAKAKSLHG 107 (186)
T ss_dssp HHHHHHHHHCSCEEEECSHHHHHHHHHHHHHHHHTTCCEEETTSTTCCCCCTTCEEEEECSSSCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCeEEEEecCHHHHHHHHHHHHHHhcCCeEEEeCcccccCCCCCCEEEEEcCCCCcHHHHHHHHHHHHCCC
Confidence 34445565667888888764 2222222 222223221 122 2222223345566788999999
Q ss_pred CEEEEccchHHHHhhhccEEEE
Q 006256 507 SCTYTHINAISYIIHEVTRVFL 528 (653)
Q Consensus 507 ~vT~I~DsAv~~iM~~Vd~Vll 528 (653)
++..|+++.-+.+-+.+|.+|.
T Consensus 108 ~vi~IT~~~~s~l~~~ad~~l~ 129 (186)
T 1m3s_A 108 IVAALTINPESSIGKQADLIIR 129 (186)
T ss_dssp EEEEEESCTTSHHHHHCSEEEE
T ss_pred EEEEEECCCCCchHHhCCEEEE
Confidence 9999999877777778998875
No 33
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Probab=72.77 E-value=17 Score=36.13 Aligned_cols=109 Identities=12% Similarity=0.059 Sum_probs=68.0
Q ss_pred HHHHHHHhccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCC------------------chHHHHHHHHHhC-
Q 006256 444 IVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPK------------------HEGKLLLRRLVRK- 504 (653)
Q Consensus 444 Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~------------------~EG~~La~eL~~~- 504 (653)
++..+.+.+. +..||..|.+.+=..++..+...|.. ++.++|.... ..-..++++|.+.
T Consensus 21 ~g~~~q~~l~-~~~VlVvG~Gg~G~~va~~La~~Gv~-~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n 98 (249)
T 1jw9_B 21 FDFDGQEALK-DSRVLIVGLGGLGCAASQYLASAGVG-NLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRIN 98 (249)
T ss_dssp THHHHHHHHH-HCEEEEECCSHHHHHHHHHHHHHTCS-EEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHC
T ss_pred cCHHHHHHHh-CCeEEEEeeCHHHHHHHHHHHHcCCC-eEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHC
Confidence 4445555554 46899999876555556666666754 5555555441 1223444666653
Q ss_pred -CCCEEEEc----cchHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeec
Q 006256 505 -GLSCTYTH----INAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (653)
Q Consensus 505 -GI~vT~I~----DsAv~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~a 563 (653)
++.++.+. +..+..++.++|.||...|..- --+.+.-.|+.+++|++.++
T Consensus 99 p~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~---------~~~~l~~~~~~~~~p~i~~~ 153 (249)
T 1jw9_B 99 PHIAITPVNALLDDAELAALIAEHDLVLDCTDNVA---------VRNQLNAGCFAAKVPLVSGA 153 (249)
T ss_dssp TTSEEEEECSCCCHHHHHHHHHTSSEEEECCSSHH---------HHHHHHHHHHHHTCCEEEEE
T ss_pred CCcEEEEEeccCCHhHHHHHHhCCCEEEEeCCCHH---------HHHHHHHHHHHcCCCEEEee
Confidence 56666543 2234556788999998876542 23667778889999988764
No 34
>3rrl_A Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori}
Probab=71.88 E-value=11 Score=37.73 Aligned_cols=22 Identities=14% Similarity=-0.022 Sum_probs=19.2
Q ss_pred hccEEEEcceeEecCCCeeccc
Q 006256 522 EVTRVFLGASSVLSNGTVCSRV 543 (653)
Q Consensus 522 ~Vd~VllGAdaIlaNG~V~NKi 543 (653)
++|..|+.|...-.+|.+.-.-
T Consensus 151 ~~DvAli~a~~aD~~GN~~~~~ 172 (235)
T 3rrl_A 151 TGDYGLIKAYKSDTLGNLVFRK 172 (235)
T ss_dssp CEEEEEEECSEEETTCCEECCG
T ss_pred CCeEEEEEeeecCCCceEEEec
Confidence 5799999999999999987654
No 35
>3rrl_B Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori} PDB: 3cdk_B
Probab=71.35 E-value=4.2 Score=40.10 Aligned_cols=94 Identities=21% Similarity=0.299 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhccCCCEEEE-eCChHHHHHHHHHHHHcCCeeEEEEeCCC-----CCc-hHHHHHHHHHhCCC------C
Q 006256 441 DRVIVKHAVTKIRDGDVLLT-YGSSSAVEMILQHAHELGKQFRVVIVDSR-----PKH-EGKLLLRRLVRKGL------S 507 (653)
Q Consensus 441 ~~~Ia~~a~~~I~dGdvILT-~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESR-----P~~-EG~~La~eL~~~GI------~ 507 (653)
++.|+..++..|+||++|-. +|-.+.|..++. ++.+ .+..|+- |.- +|. .-..|...|- +
T Consensus 2 r~~Ia~raA~el~dG~~vnlGIGiP~~va~~~~-----~~~v-~l~~E~G~~g~~p~p~~~~-~d~~~in~G~~~~t~~~ 74 (207)
T 3rrl_B 2 REAIIKRAAKELKEGMYVNLGIGLPTLVANEVS-----GMNI-VFQSENGLLGIGAYPLEGS-VDADLINAGKETITVVP 74 (207)
T ss_dssp HHHHHHHHHTTCCTTCEEEECTTGGGGGGGGGS-----SSCC-EEEETTTEEEECCCCCTTC-CCTTCBCTTSBBCCEEE
T ss_pred hHHHHHHHHHhCCCCCEEEECCChHHHHHHhcc-----CCcE-EEEeccceecCcCCCCccc-cCHhHeecCCceeeecC
Confidence 35799999999999986543 343345544333 4443 3344543 332 121 1133444452 2
Q ss_pred EEEEccchHHHH-hh--hccEEEEcceeEecCCCeec
Q 006256 508 CTYTHINAISYI-IH--EVTRVFLGASSVLSNGTVCS 541 (653)
Q Consensus 508 vT~I~DsAv~~i-M~--~Vd~VllGAdaIlaNG~V~N 541 (653)
..-+.|++-.+- ++ ++|..|+||--|-.+|.+.|
T Consensus 75 ~~~~~~~~~~F~~~~gG~~Dvailga~qVD~~Gnvn~ 111 (207)
T 3rrl_B 75 GASFFNSADSFAMIRGGHIDLAILGGMEVSQNGDLAN 111 (207)
T ss_dssp EEEECCHHHHHHHHHTTCCSEEEECCSEEETTSCEEC
T ss_pred CceeeCCHHHHHHHhCCCeeEEEECHHHHCcCCCccc
Confidence 233556554444 44 69999999999999999875
No 36
>2g39_A Acetyl-COA hydrolase; coenzyme A transferase, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: c.124.1.2 c.124.1.2
Probab=70.99 E-value=77 Score=34.99 Aligned_cols=95 Identities=13% Similarity=0.160 Sum_probs=55.4
Q ss_pred HHHHHhccCCCEEEEeCCh------HHHHHHHHHHHHcCCeeEEEEe-CCCCCc-----------------hHHHHHHHH
Q 006256 446 KHAVTKIRDGDVLLTYGSS------SAVEMILQHAHELGKQFRVVIV-DSRPKH-----------------EGKLLLRRL 501 (653)
Q Consensus 446 ~~a~~~I~dGdvILT~g~S------s~Ve~vL~~A~e~gk~f~ViV~-ESRP~~-----------------EG~~La~eL 501 (653)
+.|+.+|+||++|.+.|+. .++..+.+.+.+...+++++.. ...|.. .|.. .+++
T Consensus 19 eEAv~~IkdGdtV~~gGf~~~G~P~~Li~AL~~r~~~~dl~Ltl~~~~~~g~~~~~~l~~~g~v~~~~~~~~~~~-~r~~ 97 (497)
T 2g39_A 19 AEAADLIQDGMTVGMSGFTRAGEAKAVPQALAMRAKERPLRISLMTGASLGNDLDKQLTEAGVLARRMPFQVDST-LRKA 97 (497)
T ss_dssp HHHHTTCCTTCEEEECCBTTBSCCCHHHHHHHHHHHHSCCCEEEECSSCCCTTHHHHHHHTTCEEEEESCCCCHH-HHHH
T ss_pred HHHHhhCCCCCEEEECCCCCCCCHHHHHHHHHHhhhcCCceEEEEecccccccchHHHhcCCceEEEEeeCCCHH-HHHH
Confidence 4566789999999999874 3454444444322222445431 223332 2222 3344
Q ss_pred HhCCCCEEEEc--cchHHHHhh-----hccEEEEcceeEecCCCeecc
Q 006256 502 VRKGLSCTYTH--INAISYIIH-----EVTRVFLGASSVLSNGTVCSR 542 (653)
Q Consensus 502 ~~~GI~vT~I~--DsAv~~iM~-----~Vd~VllGAdaIlaNG~V~NK 542 (653)
.+.|- ++|++ .+.+..++. ++|..|+-|...-.+|.+.-.
T Consensus 98 i~~G~-v~fvP~~ls~~~~~l~~~~l~~~DVAlI~as~aDe~Gnls~~ 144 (497)
T 2g39_A 98 INAGE-VMFIDQHLSETVEQLRNHQLKLPDIAVIEAAAITEQGHIVPT 144 (497)
T ss_dssp HHTTS-SEECCCCTTTHHHHHHTTSSCCCSEEEEEESEECTTSCEECC
T ss_pred HHcCC-CeEECCccccHHHHHHcCCcCCCCEEEEEecccCCCceEEEe
Confidence 55553 44543 344444443 489999999999999987654
No 37
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=70.34 E-value=18 Score=36.41 Aligned_cols=101 Identities=9% Similarity=0.153 Sum_probs=55.8
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc------------hHHHHhh
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN------------AISYIIH 521 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds------------Av~~iM~ 521 (653)
...+++|-|.+.++..++..+.+.| -+|++. .|.+.+...+ +...|+.+..+... .+-..+.
T Consensus 90 ~~~v~~~~g~~~a~~~~~~~~~~~g--d~vl~~--~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~ 163 (391)
T 4dq6_A 90 SEWLIYSPGVIPAISLLINELTKAN--DKIMIQ--EPVYSPFNSV--VKNNNRELIISPLQKLENGNYIMDYEDIENKIK 163 (391)
T ss_dssp GGGEEEESCHHHHHHHHHHHHSCTT--CEEEEC--SSCCTHHHHH--HHHTTCEEEECCCEECTTSCEECCHHHHHHHCT
T ss_pred HHHeEEcCChHHHHHHHHHHhCCCC--CEEEEc--CCCCHHHHHH--HHHcCCeEEeeeeeecCCCceEeeHHHHHHHhh
Confidence 3467778777778876666654333 355553 3667665443 34568877766422 2333333
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 522 ~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
+ .++++=.+---..|.++..---..++-+|++|++.+++
T Consensus 164 ~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 202 (391)
T 4dq6_A 164 D-VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIIS 202 (391)
T ss_dssp T-EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred c-CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEe
Confidence 4 33332222222234444444444566789999998776
No 38
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=70.02 E-value=50 Score=29.51 Aligned_cols=103 Identities=15% Similarity=0.190 Sum_probs=54.6
Q ss_pred EEEEeCC-hHH----HHHHHHHHHHcCCeeEEE-EeCCCCC-c-----hHHHH----HHHHHhCCCCEEE---Ecc-chH
Q 006256 457 VLLTYGS-SSA----VEMILQHAHELGKQFRVV-IVDSRPK-H-----EGKLL----LRRLVRKGLSCTY---THI-NAI 516 (653)
Q Consensus 457 vILT~g~-Ss~----Ve~vL~~A~e~gk~f~Vi-V~ESRP~-~-----EG~~L----a~eL~~~GI~vT~---I~D-sAv 516 (653)
+++-+.. |.. ++..+..|...+..+.++ |.+..+. . ++.+. ...|.+.|+++.. +.. ...
T Consensus 27 ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~v~~G~~~ 106 (155)
T 3dlo_A 27 IVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGRTKDEDIIEAKETLSWAVSIIRKEGAEGEEHLLVRGKEPP 106 (155)
T ss_dssp EEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEESSSCHH
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCcccHHHHHHHHHHHHHHHHHHHhcCCCceEEEEecCCCHH
Confidence 4445566 643 333333444445565554 4443221 1 22222 2456678998764 322 222
Q ss_pred HHH---hh--hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeee
Q 006256 517 SYI---IH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (653)
Q Consensus 517 ~~i---M~--~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~ 562 (653)
-.+ .. ++|+|++|+..--.-+.. -.|+..-. +.++..+||+|+
T Consensus 107 ~~I~~~a~~~~~DLIV~G~~g~~~~~~~--~lGSv~~~-vl~~a~~PVLvV 154 (155)
T 3dlo_A 107 DDIVDFADEVDAIAIVIGIRKRSPTGKL--IFGSVARD-VILKANKPVICI 154 (155)
T ss_dssp HHHHHHHHHTTCSEEEEECCEECTTSCE--ECCHHHHH-HHHHCSSCEEEE
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCCCCE--EeccHHHH-HHHhCCCCEEEe
Confidence 333 33 699999999875222221 25655444 456778999986
No 39
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=69.77 E-value=46 Score=28.54 Aligned_cols=55 Identities=16% Similarity=0.242 Sum_probs=32.0
Q ss_pred CCC-CEEE--EccchHHHHh---h--hccEEEEcceeEecCCCeec-ccchHHHHHHHhhCCCCeeee
Q 006256 504 KGL-SCTY--THINAISYII---H--EVTRVFLGASSVLSNGTVCS-RVGTACVAMVAYGFHIPVLVC 562 (653)
Q Consensus 504 ~GI-~vT~--I~DsAv~~iM---~--~Vd~VllGAdaIlaNG~V~N-KiGT~~lAl~Ak~~~VPVyV~ 562 (653)
.|+ +++. ........++ . ++|+|++|++.- |.+-. -.|+..-.+ .++.++||+|+
T Consensus 73 ~g~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~---~~~~~~~~Gs~~~~v-l~~~~~pVlvv 136 (137)
T 2z08_A 73 TGVPKEDALLLEGVPAEAILQAARAEKADLIVMGTRGL---GALGSLFLGSQSQRV-VAEAPCPVLLV 136 (137)
T ss_dssp HCCCGGGEEEEESSHHHHHHHHHHHTTCSEEEEESSCT---TCCSCSSSCHHHHHH-HHHCSSCEEEE
T ss_pred cCCCccEEEEEecCHHHHHHHHHHHcCCCEEEECCCCC---chhhhhhhccHHHHH-HhcCCCCEEEe
Confidence 687 5533 3333333333 3 699999999852 22221 256655444 45578999986
No 40
>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4
Probab=69.69 E-value=5.6 Score=46.04 Aligned_cols=47 Identities=28% Similarity=0.341 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHcCCeeEEEEeCCCCCch--HHHHHHHHHhCCCCEEEE
Q 006256 464 SSAVEMILQHAHELGKQFRVVIVDSRPKHE--GKLLLRRLVRKGLSCTYT 511 (653)
Q Consensus 464 Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~E--G~~La~eL~~~GI~vT~I 511 (653)
|..+ ..|.+|+++|++.+|+|--.....| ....+++|.++|+.|.|-
T Consensus 384 s~Iv-~ALi~AA~rGv~V~vLvel~arfdee~ni~wa~~Le~aGv~Vv~g 432 (705)
T 2o8r_A 384 SSII-SALEAAAQSGKKVSVFVELKARFDEENNLRLSERMRRSGIRIVYS 432 (705)
T ss_dssp CHHH-HHHHHHHHTTCEEEEEECCCSCC----CHHHHHHHHHHTCEEEEC
T ss_pred HHHH-HHHHHHHHCCCEEEEEEeCCCCcchhhhHHHHHHHHHCCCEEEEc
Confidence 3444 5677777888888888764333333 567778888889888774
No 41
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=69.51 E-value=22 Score=36.14 Aligned_cols=102 Identities=18% Similarity=0.147 Sum_probs=56.3
Q ss_pred cCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc-------hHHHHhh-hcc
Q 006256 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-------AISYIIH-EVT 524 (653)
Q Consensus 453 ~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds-------Av~~iM~-~Vd 524 (653)
....+++|-|.+.++..+++.+.+.| -+|++.+ |.+.+.. ..+...|+.+..+... .+..+-. ++.
T Consensus 90 ~~~~v~~t~g~~~al~~~~~~l~~~g--d~vl~~~--p~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~ 163 (391)
T 3h14_A 90 DPGRVVITPGSSGGFLLAFTALFDSG--DRVGIGA--PGYPSYR--QILRALGLVPVDLPTAPENRLQPVPADFAGLDLA 163 (391)
T ss_dssp CGGGEEEESSHHHHHHHHHHHHCCTT--CEEEEEE--SCCHHHH--HHHHHTTCEEEEEECCGGGTTSCCHHHHTTSCCS
T ss_pred CHHHEEEecChHHHHHHHHHHhcCCC--CEEEEcC--CCCccHH--HHHHHcCCEEEEeecCcccCCCCCHHHHHhcCCe
Confidence 34567888887778876666554434 3555543 5665554 3345678888887532 1222222 344
Q ss_pred EEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 525 ~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
+|++- ..--..|.++..---..++-+|+.|++.+++
T Consensus 164 ~v~i~-~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 199 (391)
T 3h14_A 164 GLMVA-SPANPTGTMLDHAAMGALIEAAQAQGASFIS 199 (391)
T ss_dssp EEEEE-SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred EEEEC-CCCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 44442 1111234333333344567789999987775
No 42
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=68.99 E-value=12 Score=35.67 Aligned_cols=98 Identities=14% Similarity=0.078 Sum_probs=58.2
Q ss_pred CCCEEEEeCChHHHHHH-HHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCC-CEEEEccch--HHHHhhhccEEEEc
Q 006256 454 DGDVLLTYGSSSAVEMI-LQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGL-SCTYTHINA--ISYIIHEVTRVFLG 529 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~v-L~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI-~vT~I~DsA--v~~iM~~Vd~VllG 529 (653)
.|.+||..|-+.-+... .+.+.++| .+|+++.-++.. +.+|...|+ .+ +..|-. +...+..+|.|
T Consensus 20 ~~~~ilVtGatG~iG~~l~~~L~~~G--~~V~~~~R~~~~-----~~~~~~~~~~~~-~~~Dl~~~~~~~~~~~D~v--- 88 (236)
T 3e8x_A 20 QGMRVLVVGANGKVARYLLSELKNKG--HEPVAMVRNEEQ-----GPELRERGASDI-VVANLEEDFSHAFASIDAV--- 88 (236)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSGGG-----HHHHHHTTCSEE-EECCTTSCCGGGGTTCSEE---
T ss_pred CCCeEEEECCCChHHHHHHHHHHhCC--CeEEEEECChHH-----HHHHHhCCCceE-EEcccHHHHHHHHcCCCEE---
Confidence 46789999887655433 34455555 467766544322 234555676 33 334432 22233344544
Q ss_pred ceeEecCCCee-----------cccchHHHHHHHhhCCCCeeeecccc
Q 006256 530 ASSVLSNGTVC-----------SRVGTACVAMVAYGFHIPVLVCCEAY 566 (653)
Q Consensus 530 AdaIlaNG~V~-----------NKiGT~~lAl~Ak~~~VPVyV~aety 566 (653)
+.|.+.. |-.|+..+.-+|+..++.-+|...+|
T Consensus 89 ----i~~ag~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~ 132 (236)
T 3e8x_A 89 ----VFAAGSGPHTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSV 132 (236)
T ss_dssp ----EECCCCCTTSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCT
T ss_pred ----EECCCCCCCCCccccchhhHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 4444433 77889999999999998877776664
No 43
>3d3u_A 4-hydroxybutyrate COA-transferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.80A {Porphyromonas gingivalis}
Probab=68.60 E-value=29 Score=37.54 Aligned_cols=43 Identities=9% Similarity=-0.113 Sum_probs=24.7
Q ss_pred cEEEEcceeEecCCCeecc-cchHH---------HHHHHhh-CCCCeeeecccc
Q 006256 524 TRVFLGASSVLSNGTVCSR-VGTAC---------VAMVAYG-FHIPVLVCCEAY 566 (653)
Q Consensus 524 d~VllGAdaIlaNG~V~NK-iGT~~---------lAl~Ak~-~~VPVyV~aety 566 (653)
|..|+||=-|-.+|.+.+- +|+-+ ++.-|+. .+=.+++|+++.
T Consensus 307 dv~i~ga~evD~~G~vn~~~~g~~~~~G~GG~~D~~~~A~~s~~gk~ii~~~~t 360 (439)
T 3d3u_A 307 MVSINSCLEMDLMGQAASESIGYEQFSGSGGQVDFLRGAKRSKGGISIMAFPST 360 (439)
T ss_dssp EEEEECCSCEETTSCC--------------CHHHHHHHHTTSTTCEEEEECCSE
T ss_pred cEEEehheEecCCCCEeeeccCCeeecccccHHHHhhcccccCCCeEEEEEeee
Confidence 8999999999999998754 44432 2444442 233567777654
No 44
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=68.53 E-value=40 Score=31.00 Aligned_cols=37 Identities=11% Similarity=0.084 Sum_probs=30.6
Q ss_pred hHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEc
Q 006256 493 EGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLG 529 (653)
Q Consensus 493 EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllG 529 (653)
+-.++++.+.+.|+++..|+++.-+.+-+.+|.+|.-
T Consensus 102 ~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~ 138 (187)
T 3sho_A 102 DTVAALAGAAERGVPTMALTDSSVSPPARIADHVLVA 138 (187)
T ss_dssp HHHHHHHHHHHTTCCEEEEESCTTSHHHHHCSEEEEC
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCCcchhhCcEEEEe
Confidence 4556678889999999999998877777889988863
No 45
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=67.73 E-value=19 Score=31.47 Aligned_cols=91 Identities=13% Similarity=0.081 Sum_probs=52.9
Q ss_pred CCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHh-----hhccEEEEc
Q 006256 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYII-----HEVTRVFLG 529 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM-----~~Vd~VllG 529 (653)
+..|+..|++..=..+.+.+.++| ++|+++|..|. -+.++.+.|+.+.+. |..-...+ .++|.||+.
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g--~~V~~id~~~~-----~~~~~~~~~~~~~~g-d~~~~~~l~~~~~~~~d~vi~~ 77 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAG--KKVLAVDKSKE-----KIELLEDEGFDAVIA-DPTDESFYRSLDLEGVSAVLIT 77 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTT--CCEEEEESCHH-----HHHHHHHTTCEEEEC-CTTCHHHHHHSCCTTCSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CeEEEEECCHH-----HHHHHHHCCCcEEEC-CCCCHHHHHhCCcccCCEEEEe
Confidence 457888898875444455555555 46777776542 345666778765443 33222223 356777654
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCCeeee
Q 006256 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (653)
Q Consensus 530 AdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~ 562 (653)
.. +.-....++..|+..+++.+++
T Consensus 78 ~~---------~~~~n~~~~~~a~~~~~~~iia 101 (141)
T 3llv_A 78 GS---------DDEFNLKILKALRSVSDVYAIV 101 (141)
T ss_dssp CS---------CHHHHHHHHHHHHHHCCCCEEE
T ss_pred cC---------CHHHHHHHHHHHHHhCCceEEE
Confidence 43 2233466788888887544443
No 46
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=67.51 E-value=5.3 Score=44.07 Aligned_cols=107 Identities=11% Similarity=0.106 Sum_probs=48.9
Q ss_pred HHHHhccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchH----------
Q 006256 447 HAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAI---------- 516 (653)
Q Consensus 447 ~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv---------- 516 (653)
.+-..|..||+|+..|....++.+..........-+|+|+-. ..-|..++++|.+.|+++++|..+.-
T Consensus 315 ~~~~~l~~GD~L~v~g~~~~l~~~~~~~~~~~~~~~viIiG~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~i~ 392 (565)
T 4gx0_A 315 QRETVLTEQSLLVLAGTKSQLAALEYLIGEAPEDELIFIIGH--GRIGCAAAAFLDRKPVPFILIDRQESPVCNDHVVVY 392 (565)
T ss_dssp --------------------------------CCCCEEEECC--SHHHHHHHHHHHHTTCCEEEEESSCCSSCCSSCEEE
T ss_pred CCCcEeCCCCEEEEEeCHHHHHHHHHHhcCCCCCCCEEEECC--CHHHHHHHHHHHHCCCCEEEEECChHHHhhcCCEEE
Confidence 445567789999999988777654433322112256777655 34588999999999999999863321
Q ss_pred ----------HHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeecc
Q 006256 517 ----------SYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCE 564 (653)
Q Consensus 517 ----------~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~ae 564 (653)
..-+.++|.|++..+. .-=+..+++.||..+....|++-
T Consensus 393 gD~t~~~~L~~agi~~ad~vi~~~~~---------d~~ni~~~~~ak~l~~~~~iiar 441 (565)
T 4gx0_A 393 GDATVGQTLRQAGIDRASGIIVTTND---------DSTNIFLTLACRHLHSHIRIVAR 441 (565)
T ss_dssp SCSSSSTHHHHHTTTSCSEEEECCSC---------HHHHHHHHHHHHHHCSSSEEEEE
T ss_pred eCCCCHHHHHhcCccccCEEEEECCC---------chHHHHHHHHHHHHCCCCEEEEE
Confidence 1112356666554432 23457788999999987666554
No 47
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=66.58 E-value=27 Score=35.68 Aligned_cols=100 Identities=15% Similarity=0.219 Sum_probs=51.9
Q ss_pred CCEEEEeCChHHHHHHHHHHH------HcCCeeEEEEeCCCCCchHHHHH-HHHHhC---CCCEEEEc-cchHHHHhh-h
Q 006256 455 GDVLLTYGSSSAVEMILQHAH------ELGKQFRVVIVDSRPKHEGKLLL-RRLVRK---GLSCTYTH-INAISYIIH-E 522 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~------e~gk~f~ViV~ESRP~~EG~~La-~eL~~~---GI~vT~I~-DsAv~~iM~-~ 522 (653)
..+++|-|.+..+..+|+.+. +.|. +|++++ .+.+.+...+ ..+.+. |+.+.++. ...+-..+. +
T Consensus 89 ~~v~~~~g~t~al~~al~~~~~~~~~~~~gd--~vii~~-~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~l~~~i~~~ 165 (416)
T 1qz9_A 89 GEVVVTDTTSINLFKVLSAALRVQATRSPER--RVIVTE-TSNFPTDLYIAEGLADMLQQGYTLRLVDSPEELPQAIDQD 165 (416)
T ss_dssp TSEEECSCHHHHHHHHHHHHHHHHHHHSTTC--CEEEEE-TTSCHHHHHHHHHHHHHHCSSCEEEEESSGGGHHHHCSTT
T ss_pred ccEEEeCChhHHHHHHHHhhcccccccCCCC--cEEEEc-CCCCCchHHHHHHHHHHhcCCceEEEeCcHHHHHHHhCCC
Confidence 467777665556655565543 3343 344443 3444432222 233332 88888886 334433443 3
Q ss_pred ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 523 Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
+.+|++ ...-...|.+.. --.|+-+|++||+.+++
T Consensus 166 ~~~v~~-~~~~nptG~~~~---l~~i~~l~~~~~~~li~ 200 (416)
T 1qz9_A 166 TAVVML-THVNYKTGYMHD---MQALTALSHECGALAIW 200 (416)
T ss_dssp EEEEEE-ESBCTTTCBBCC---HHHHHHHHHHHTCEEEE
T ss_pred ceEEEE-eccccCcccccC---HHHHHHHHHHcCCEEEE
Confidence 333332 222223355544 35677789999987766
No 48
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=64.42 E-value=8.3 Score=36.30 Aligned_cols=100 Identities=8% Similarity=0.056 Sum_probs=56.1
Q ss_pred EEEEeCChHHHHHHH-HHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEE--cc--chHHHHhhhccEEEEcce
Q 006256 457 VLLTYGSSSAVEMIL-QHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT--HI--NAISYIIHEVTRVFLGAS 531 (653)
Q Consensus 457 vILT~g~Ss~Ve~vL-~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I--~D--sAv~~iM~~Vd~VllGAd 531 (653)
+||..|-+..+...| +.+.++| .+|+++.-++... ..+ .++.+... .| ..+..++.++|.||--|-
T Consensus 2 ~ilItGatG~iG~~l~~~L~~~g--~~V~~~~R~~~~~-----~~~--~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag 72 (219)
T 3dqp_A 2 KIFIVGSTGRVGKSLLKSLSTTD--YQIYAGARKVEQV-----PQY--NNVKAVHFDVDWTPEEMAKQLHGMDAIINVSG 72 (219)
T ss_dssp EEEEESTTSHHHHHHHHHHTTSS--CEEEEEESSGGGS-----CCC--TTEEEEECCTTSCHHHHHTTTTTCSEEEECCC
T ss_pred eEEEECCCCHHHHHHHHHHHHCC--CEEEEEECCccch-----hhc--CCceEEEecccCCHHHHHHHHcCCCEEEECCc
Confidence 577777666554444 3444444 6777665443210 001 23332222 12 234455667777776554
Q ss_pred eEecCCCeecccchHHHHHHHhhCCCCeeeeccc
Q 006256 532 SVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (653)
Q Consensus 532 aIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~aet 565 (653)
....+---+|-.|+..+.-+|+..+++-+|...+
T Consensus 73 ~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS 106 (219)
T 3dqp_A 73 SGGKSLLKVDLYGAVKLMQAAEKAEVKRFILLST 106 (219)
T ss_dssp CTTSSCCCCCCHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCCCcEeEeHHHHHHHHHHHHHhCCCEEEEECc
Confidence 3333333458889999999999999876665444
No 49
>1k6d_A Acetate COA-transferase alpha subunit; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Escherichia coli} SCOP: c.124.1.2
Probab=64.36 E-value=20 Score=35.17 Aligned_cols=42 Identities=12% Similarity=0.148 Sum_probs=27.8
Q ss_pred hccEEEEcceeEecCCCeeccc--c--hHHHHHHHhhCCCCeeeeccccccc
Q 006256 522 EVTRVFLGASSVLSNGTVCSRV--G--TACVAMVAYGFHIPVLVCCEAYKFH 569 (653)
Q Consensus 522 ~Vd~VllGAdaIlaNG~V~NKi--G--T~~lAl~Ak~~~VPVyV~aetyKf~ 569 (653)
++|..|+-|...-.+|.+.-.. + +..+|.+|| .|+++.-++.
T Consensus 148 ~~DVAli~a~~aD~~Gn~~~~~~~~~~~~~~a~aA~------~VIveVn~~v 193 (220)
T 1k6d_A 148 RADLALIRAHRCDTLGNLTYQLSARNFNPLIALAAD------ITLVEPDELV 193 (220)
T ss_dssp CEEEEEEEEEEEETTCCEECCHHHHTTHHHHHHHEE------EEEEEEEEEE
T ss_pred CCcEEEEEeecCCCCceEEEecCCccccHHHHHhcC------EEEEEEcccc
Confidence 5899999999999999977652 2 223455555 5555543333
No 50
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=64.28 E-value=14 Score=31.77 Aligned_cols=60 Identities=13% Similarity=0.119 Sum_probs=34.5
Q ss_pred HHHHhCCCCEEEEc--cchHHH---HhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeee
Q 006256 499 RRLVRKGLSCTYTH--INAISY---IIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (653)
Q Consensus 499 ~eL~~~GI~vT~I~--DsAv~~---iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~ 562 (653)
..|.+.|++++... ....-. +..++|+|++|++.- |.+-.-.|+..-. +.++..+||+|+
T Consensus 73 ~~~~~~g~~~~~~v~~g~~~~~I~~~a~~~dliV~G~~~~---~~~~~~~Gs~~~~-vl~~~~~pVlvv 137 (138)
T 3idf_A 73 TFFTEKGINPFVVIKEGEPVEMVLEEAKDYNLLIIGSSEN---SFLNKIFASHQDD-FIQKAPIPVLIV 137 (138)
T ss_dssp HHHHTTTCCCEEEEEESCHHHHHHHHHTTCSEEEEECCTT---STTSSCCCCTTCH-HHHHCSSCEEEE
T ss_pred HHHHHCCCCeEEEEecCChHHHHHHHHhcCCEEEEeCCCc---chHHHHhCcHHHH-HHhcCCCCEEEe
Confidence 34556788875532 222222 233899999999752 2222222554333 355667999986
No 51
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=64.27 E-value=1.2e+02 Score=30.30 Aligned_cols=101 Identities=12% Similarity=0.182 Sum_probs=54.2
Q ss_pred CCEEEEeCChHHHHHHHHHHHH--cCCeeEEEEeCCCCCchHHHH-HHH-HHhCCCCEEEEcc--------chHHHHhh-
Q 006256 455 GDVLLTYGSSSAVEMILQHAHE--LGKQFRVVIVDSRPKHEGKLL-LRR-LVRKGLSCTYTHI--------NAISYIIH- 521 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~e--~gk~f~ViV~ESRP~~EG~~L-a~e-L~~~GI~vT~I~D--------sAv~~iM~- 521 (653)
..+++|.|.+.++..+++.+.+ .+..-+|++.+ |.+.|... ... +...|+.+.++.. ..+-..+.
T Consensus 86 ~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~ 163 (406)
T 1kmj_A 86 EELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQ--MEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDE 163 (406)
T ss_dssp GGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEET--TCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHCCT
T ss_pred CeEEEeCChhHHHHHHHHHhhhhcCCCCCEEEEec--ccchHHHHHHHHHHHhCCCEEEEEecCCCCCcCHHHHHHHhcc
Confidence 4677887777788766665521 12334566653 44444322 222 3345888877753 23333332
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 522 ~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
++.+|++ ..---..|.+.. --.++-+|++|++.+++
T Consensus 164 ~~~~v~~-~~~~nptG~~~~---l~~i~~l~~~~~~~li~ 199 (406)
T 1kmj_A 164 KTRLLAI-THVSNVLGTENP---LAEMITLAHQHGAKVLV 199 (406)
T ss_dssp TEEEEEE-ESBCTTTCCBCC---HHHHHHHHHHTTCEEEE
T ss_pred CCeEEEE-eCCCccccCcCC---HHHHHHHHHHcCCEEEE
Confidence 3333433 222222355555 35677789999987765
No 52
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=64.20 E-value=7.2 Score=40.04 Aligned_cols=107 Identities=19% Similarity=0.202 Sum_probs=71.5
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcceeE
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSV 533 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAdaI 533 (653)
+-|+++.+-....+..++.+|.+.|.+.-|++.+.-|..+-.++.+...+.|+ .++-.|+++.+-+...+.......+
T Consensus 70 ~~Dv~ii~vp~~~~~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi--~viGPNc~Gii~~~~~~~~~~~~~~ 147 (294)
T 2yv1_A 70 DANASVIFVPAPFAKDAVFEAIDAGIELIVVITEHIPVHDTMEFVNYAEDVGV--KIIGPNTPGIASPKVGKLGIIPMEV 147 (294)
T ss_dssp CCCEEEECCCHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTC--EEECSSCCEEEETTTEEEECCCGGG
T ss_pred CCCEEEEccCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCC--EEEcCCCceeeccCcceeeecccCC
Confidence 34788888888888899999999887766666676665555666677777787 4666666655544433332222223
Q ss_pred ecCC--CeecccchHHHHH--HHhhCCCCeeee
Q 006256 534 LSNG--TVCSRVGTACVAM--VAYGFHIPVLVC 562 (653)
Q Consensus 534 laNG--~V~NKiGT~~lAl--~Ak~~~VPVyV~ 562 (653)
..-| +++++.||+..++ .+...++.|--+
T Consensus 148 ~~~G~va~vSqSG~l~~~~~~~~~~~g~G~s~~ 180 (294)
T 2yv1_A 148 LKEGSVGMVSRSGTLTYEIAHQIKKAGFGVSTC 180 (294)
T ss_dssp CCEEEEEEEESCSHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCEEEEECCHHHHHHHHHHHHhCCCCeEEE
Confidence 3344 5789999998887 456777877533
No 53
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=64.11 E-value=92 Score=28.89 Aligned_cols=37 Identities=0% Similarity=-0.289 Sum_probs=29.9
Q ss_pred hHHHHHHHHHhCCCCEEEEccchHHHHhhh---ccEEEEc
Q 006256 493 EGKLLLRRLVRKGLSCTYTHINAISYIIHE---VTRVFLG 529 (653)
Q Consensus 493 EG~~La~eL~~~GI~vT~I~DsAv~~iM~~---Vd~VllG 529 (653)
+=.++++.+.+.|+++..|+++.-+.+.+. +|.+|.-
T Consensus 128 ~~i~~~~~ak~~g~~vI~IT~~~~s~La~~~~~ad~~l~~ 167 (199)
T 1x92_A 128 NVIQAIQAAHDREMLVVALTGRDGGGMASLLLPEDVEIRV 167 (199)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHCCTTCEEEEC
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCCcHHhccccCCEEEEe
Confidence 445667888999999999999877777777 8988753
No 54
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=62.74 E-value=1e+02 Score=31.14 Aligned_cols=101 Identities=14% Similarity=0.174 Sum_probs=54.1
Q ss_pred CCEEEEeCChHHHHHHHHHHHH--cCCeeEEEEeCCCCCchHHHH--HHHHHhCCCCEEEEccc--------hHHHHhh-
Q 006256 455 GDVLLTYGSSSAVEMILQHAHE--LGKQFRVVIVDSRPKHEGKLL--LRRLVRKGLSCTYTHIN--------AISYIIH- 521 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~e--~gk~f~ViV~ESRP~~EG~~L--a~eL~~~GI~vT~I~Ds--------Av~~iM~- 521 (653)
..+++|.|.+.++..++..+.+ .+..-+|++. .|.+.|... ...+...|+.+..+... .+-..+.
T Consensus 91 ~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~Vl~~--~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~ 168 (420)
T 1t3i_A 91 REIVYTRNATEAINLVAYSWGMNNLKAGDEIITT--VMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLSE 168 (420)
T ss_dssp GGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEE--TTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHCCT
T ss_pred CeEEEcCChHHHHHHHHHHhhhcccCCCCEEEEC--cchhHHHHHHHHHHHHhcCcEEEEeccCCCCCcCHHHHHHhhCC
Confidence 4677887777788766666511 1223356654 355555332 12233468888777531 2222222
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 522 ~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
++..|++ ..--...|.+.. --.++-+|++|++.+++
T Consensus 169 ~~~~v~~-~~~~nptG~~~~---l~~i~~l~~~~~~~li~ 204 (420)
T 1t3i_A 169 KTKLVTV-VHISNTLGCVNP---AEEIAQLAHQAGAKVLV 204 (420)
T ss_dssp TEEEEEE-ESBCTTTCBBCC---HHHHHHHHHHTTCEEEE
T ss_pred CceEEEE-eCCcccccCcCC---HHHHHHHHHHcCCEEEE
Confidence 2333333 222222455554 35677889999987776
No 55
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=62.52 E-value=48 Score=33.11 Aligned_cols=97 Identities=16% Similarity=0.150 Sum_probs=56.4
Q ss_pred EEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc--------chHHHHh---hhccE
Q 006256 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYII---HEVTR 525 (653)
Q Consensus 457 vILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D--------sAv~~iM---~~Vd~ 525 (653)
+++|.|.+.++..++..+.+.| -+|++. .|.+.|..+...+...|+.+..+.. ..+-..+ +++..
T Consensus 74 v~~~~g~t~a~~~~~~~l~~~g--d~vl~~--~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~ 149 (386)
T 2dr1_A 74 LLVPSSGTGIMEASIRNGVSKG--GKVLVT--IIGAFGKRYKEVVESNGRKAVVLEYEPGKAVKPEDLDDALRKNPDVEA 149 (386)
T ss_dssp EEESSCHHHHHHHHHHHHSCTT--CEEEEE--ESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHCTTCCE
T ss_pred EEEeCChHHHHHHHHHHhhcCC--CeEEEE--cCCchhHHHHHHHHHhCCceEEEecCCCCCCCHHHHHHHHhcCCCCcE
Confidence 5666666677766666554333 356654 4566664444556667888777642 2233344 23555
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 526 VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
|++- .---..|.+.. --.++-+|++|++.+++
T Consensus 150 v~~~-~~~nptG~~~~---l~~i~~l~~~~~~~li~ 181 (386)
T 2dr1_A 150 VTIT-YNETSTGVLNP---LPELAKVAKEHDKLVFV 181 (386)
T ss_dssp EEEE-SEETTTTEECC---HHHHHHHHHHTTCEEEE
T ss_pred EEEE-eecCCcchhCC---HHHHHHHHHHcCCeEEE
Confidence 5543 32233455433 36677789999987765
No 56
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}
Probab=62.51 E-value=26 Score=34.40 Aligned_cols=99 Identities=10% Similarity=0.040 Sum_probs=54.9
Q ss_pred CCEEEEeCChHHHH-HHHHHHHHcCCeeEEEEeCCCC-C--c--hHHHHHHHHHhCCCCEEEEc--c-chHHHHhhhccE
Q 006256 455 GDVLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRP-K--H--EGKLLLRRLVRKGLSCTYTH--I-NAISYIIHEVTR 525 (653)
Q Consensus 455 GdvILT~g~Ss~Ve-~vL~~A~e~gk~f~ViV~ESRP-~--~--EG~~La~eL~~~GI~vT~I~--D-sAv~~iM~~Vd~ 525 (653)
+.+||..|-+..+. .+++.+.++| ++|+++.-++ . . +-...+.+|...|+.+.... | ..+..++..+|.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~ 79 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAG--NPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDI 79 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHT--CCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSE
T ss_pred CcEEEEECCCchHHHHHHHHHHhCC--CcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCCCE
Confidence 34677777643332 2233444556 4555554333 1 1 22233456667787654432 2 245556666666
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHhhCC-CCeeee
Q 006256 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFH-IPVLVC 562 (653)
Q Consensus 526 VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~-VPVyV~ 562 (653)
||.- .+...-.|+..+.-+|+..+ +.-+|.
T Consensus 80 vi~~-------a~~~~~~~~~~l~~aa~~~g~v~~~v~ 110 (307)
T 2gas_A 80 VICA-------AGRLLIEDQVKIIKAIKEAGNVKKFFP 110 (307)
T ss_dssp EEEC-------SSSSCGGGHHHHHHHHHHHCCCSEEEC
T ss_pred EEEC-------CcccccccHHHHHHHHHhcCCceEEee
Confidence 6543 33333567888888888888 887774
No 57
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=62.39 E-value=24 Score=35.38 Aligned_cols=101 Identities=11% Similarity=0.098 Sum_probs=56.2
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc-----------chHHHHhh-
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-----------NAISYIIH- 521 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D-----------sAv~~iM~- 521 (653)
...+++|.|.+.++..++..+.+.| -+|++.+ |.+.|... .+...|+.+..+.. ..+-..+.
T Consensus 82 ~~~v~~~~g~~~a~~~~~~~l~~~g--d~vl~~~--~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~ 155 (383)
T 3kax_A 82 KEWIVFSAGIVPALSTSIQAFTKEN--ESVLVQP--PIYPPFFE--MVTTNNRQLCVSPLQKQNDTYAIDFEHLEKQFQQ 155 (383)
T ss_dssp GGGEEEESCHHHHHHHHHHHHCCTT--CEEEECS--SCCHHHHH--HHHHTTCEEEECCCEEETTEEECCHHHHHHHHTT
T ss_pred hhhEEEcCCHHHHHHHHHHHhCCCC--CEEEEcC--CCcHHHHH--HHHHcCCEEEeccceecCCcEEEcHHHHHHHhCc
Confidence 3467888777778876666664334 3555533 66666543 34456777666541 12333332
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 522 ~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
++..|++ ..---..|.++..---..++-+|++|++.+++
T Consensus 156 ~~~~v~i-~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 194 (383)
T 3kax_A 156 GVKLMLL-CSPHNPIGRVWKKEELTKLGSLCTKYNVIVVA 194 (383)
T ss_dssp TCCEEEE-ESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred CCeEEEE-eCCCCCCCcCcCHHHHHHHHHHHHHCCCEEEE
Confidence 5666665 33222334444333333455569999998876
No 58
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=62.00 E-value=27 Score=32.05 Aligned_cols=86 Identities=12% Similarity=0.061 Sum_probs=48.8
Q ss_pred CCEEEEeCChHHHHHHHHHHHHc-CCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHH-----hhhccEEEE
Q 006256 455 GDVLLTYGSSSAVEMILQHAHEL-GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYI-----IHEVTRVFL 528 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~e~-gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~i-----M~~Vd~Vll 528 (653)
++.|+.+|.+..=..+.+.+.+. |. .|+++|..|. -+..|.+.|+.+.+........+ +.++|.||+
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~--~V~vid~~~~-----~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~ 111 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGK--ISLGIEIREE-----AAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLL 111 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCS--CEEEEESCHH-----HHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEE
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCC--eEEEEECCHH-----HHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEE
Confidence 66888999987655555666665 54 6777776542 24556778887654321111111 334566655
Q ss_pred cceeEecCCCeecccchHHHHHHHhhCC
Q 006256 529 GASSVLSNGTVCSRVGTACVAMVAYGFH 556 (653)
Q Consensus 529 GAdaIlaNG~V~NKiGT~~lAl~Ak~~~ 556 (653)
-.. +......++.+++..+
T Consensus 112 ~~~---------~~~~~~~~~~~~~~~~ 130 (183)
T 3c85_A 112 AMP---------HHQGNQTALEQLQRRN 130 (183)
T ss_dssp CCS---------SHHHHHHHHHHHHHTT
T ss_pred eCC---------ChHHHHHHHHHHHHHC
Confidence 332 1223345566777776
No 59
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=61.39 E-value=47 Score=33.30 Aligned_cols=104 Identities=12% Similarity=-0.010 Sum_probs=60.2
Q ss_pred cCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccch-------H-HHHhhhcc
Q 006256 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA-------I-SYIIHEVT 524 (653)
Q Consensus 453 ~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsA-------v-~~iM~~Vd 524 (653)
....+++|-|.+.++..+++.+.+.+..-+|++. .|.+.+... .+...|+.+..+.... + ..+-+++.
T Consensus 81 ~~~~i~~t~g~~~al~~~~~~~~~~~~gd~vl~~--~p~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~ 156 (376)
T 3ezs_A 81 KENELISTLGSREVLFNFPSFVLFDYQNPTIAYP--NPFYQIYEG--AAKFIKAKSLLMPLTKENDFTPSLNEKELQEVD 156 (376)
T ss_dssp CGGGEEEESSSHHHHHHHHHHHTTTCSSCEEEEE--ESCCTHHHH--HHHHTTCEEEEEECCGGGTSCCCCCHHHHHHCS
T ss_pred CHHHEEECcCcHHHHHHHHHHHcCCCCCCEEEEe--cCCcHhHHH--HHHHcCCEEEEcccCCCCCcchhHHhhhccCCC
Confidence 3457888888888887777666544103355554 455555433 3556788888775221 1 12224677
Q ss_pred EEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 525 ~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
.|++- .---..|.++..---..++-+|++|++.+++
T Consensus 157 ~v~~~-~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 192 (376)
T 3ezs_A 157 LVILN-SPNNPTGRTLSLEELISWVKLALKHDFILIN 192 (376)
T ss_dssp EEEEC-SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred EEEEc-CCCCCcCCCCCHHHHHHHHHHHHHcCcEEEE
Confidence 77663 2222335444443344566678999987765
No 60
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=61.37 E-value=7.5 Score=39.81 Aligned_cols=107 Identities=17% Similarity=0.131 Sum_probs=72.5
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcceeE
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSV 533 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAdaI 533 (653)
+-|+++.+-....+..++.+|.+.|.+.-|++.+.-|..+-.++.+...+.|| .++-.|+++.+-+...+.......+
T Consensus 64 ~~Dv~Ii~vp~~~~~~~~~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~a~~~gi--~vigPNc~Gii~~~~~~~~~~~~~~ 141 (288)
T 1oi7_A 64 EVDASIIFVPAPAAADAALEAAHAGIPLIVLITEGIPTLDMVRAVEEIKALGS--RLIGGNCPGIISAEETKIGIMPGHV 141 (288)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTC--EEEESSSCEEEETTTEEEESSCGGG
T ss_pred CCCEEEEecCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCC--EEEeCCCCeEEcCCCceeEEcccCC
Confidence 34788888888888899999999888766777776665554566667777776 4666676666555433333322223
Q ss_pred ecCC--CeecccchHHHHHH--HhhCCCCeeee
Q 006256 534 LSNG--TVCSRVGTACVAMV--AYGFHIPVLVC 562 (653)
Q Consensus 534 laNG--~V~NKiGT~~lAl~--Ak~~~VPVyV~ 562 (653)
..-| +++++.||+..+++ +...++.|--+
T Consensus 142 ~~~G~va~vsqSG~l~~~~~~~~~~~g~G~s~~ 174 (288)
T 1oi7_A 142 FKRGRVGIISRSGTLTYEAAAALSQAGLGTTTT 174 (288)
T ss_dssp CCEEEEEEEESCHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 3334 57899999988876 66678877533
No 61
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=61.14 E-value=10 Score=38.78 Aligned_cols=89 Identities=13% Similarity=0.210 Sum_probs=54.7
Q ss_pred HHHHHHHHHh----ccCCCEEEEeCChHHHHHHHHHHHHc--CCeeEEEEeCC------CCCchHHHHHHHHHhC-CCCE
Q 006256 442 RVIVKHAVTK----IRDGDVLLTYGSSSAVEMILQHAHEL--GKQFRVVIVDS------RPKHEGKLLLRRLVRK-GLSC 508 (653)
Q Consensus 442 ~~Ia~~a~~~----I~dGdvILT~g~Ss~Ve~vL~~A~e~--gk~f~ViV~ES------RP~~EG~~La~eL~~~-GI~v 508 (653)
+.|++.|+++ |.+|++|. .++|+++..+....... .+.++|+-+.+ .|......|++.|.+. |+++
T Consensus 93 ~~ia~~AA~~l~~~i~~~~~ig-l~~GsT~~~~~~~L~~~~~~~~~~vv~l~ggl~~~~~~~~~~~~i~~~la~~~~~~~ 171 (315)
T 2w48_A 93 SAMGQHGALLVDRLLEPGDIIG-FSWGRAVRSLVENLPQRSQSRQVICVPIIGGPSGKLESRYHVNTLTYGAAARLKAES 171 (315)
T ss_dssp HHHHHHHHHHHHHHCCTTCEEE-ECCSHHHHHHHTTSCCCSSCCCCEEEESBCBCTTSSCGGGCHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHhCCCCCEEE-ECChHHHHHHHHhhccccCCCCcEEEEcCCCCCCCCccccCHHHHHHHHHHHHCCce
Confidence 4566666664 88888755 57888886766655322 14577776643 3344455677887765 8777
Q ss_pred EEEcc-----ch-H-HHHh------------hhccEEEEcce
Q 006256 509 TYTHI-----NA-I-SYII------------HEVTRVFLGAS 531 (653)
Q Consensus 509 T~I~D-----sA-v-~~iM------------~~Vd~VllGAd 531 (653)
.++.- +. . -.++ .++|+.|+|.-
T Consensus 172 ~~l~~P~~~~~~~~~~~l~~~~~~~~~l~~~~~~DiailGIG 213 (315)
T 2w48_A 172 HLADFPALLDNPLIRNGIMQSQHFKTISSYWDSLDVALVGIG 213 (315)
T ss_dssp CCCCSBSBCSSHHHHHHHHHSHHHHHHHHHHTTCSEEEECCB
T ss_pred eEeeCCcccCCHHHHHHHHhChHHHHHHHHHhcCCEEEEccC
Confidence 54421 11 2 1112 26999999987
No 62
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A
Probab=61.12 E-value=14 Score=40.51 Aligned_cols=96 Identities=16% Similarity=0.154 Sum_probs=62.1
Q ss_pred HHHHHHhccCCCEEEEeCChH---HHHHHHHHHHH--cCCeeEEEEeCC-------------------CCCchHHHHHHH
Q 006256 445 VKHAVTKIRDGDVLLTYGSSS---AVEMILQHAHE--LGKQFRVVIVDS-------------------RPKHEGKLLLRR 500 (653)
Q Consensus 445 a~~a~~~I~dGdvILT~g~Ss---~Ve~vL~~A~e--~gk~f~ViV~ES-------------------RP~~EG~~La~e 500 (653)
++.|+++|++|++|.+-|... .+...|.+-.+ .-+.+++|..-+ ++++.| ...+.
T Consensus 29 aeEAv~lIkdGdtV~~gG~~g~P~~L~~AL~~r~~~g~~~~ltl~~~~~~G~~~~~~~~~~~~~~~~~~~~f~~-~~~R~ 107 (455)
T 3qli_A 29 PEEAVSSIASGSHLSMGMFAAEPPALLKALADRATRGDIGDLRVYYFETAKIAGDTILRYELNNRIKPYSMFVT-AVERA 107 (455)
T ss_dssp HHHHTTTCCTTCEEEECSGGGSCHHHHHHHHHHHHTTCCCSEEEEESSCCHHHHHTTTCGGGTTTEEEEESSCC-HHHHH
T ss_pred HHHHHHhCCCCCEEEECCcccCHHHHHHHHHHHHhhCCCcceEEEEecccccchhhhhChhhcCcEEEeeCcCC-hhHHH
Confidence 456788999999999987653 23233322222 234567764211 134455 33566
Q ss_pred HHhCC--------CCEEEEccchHHHHhh---hccEEEEcceeEecCCCeec
Q 006256 501 LVRKG--------LSCTYTHINAISYIIH---EVTRVFLGASSVLSNGTVCS 541 (653)
Q Consensus 501 L~~~G--------I~vT~I~DsAv~~iM~---~Vd~VllGAdaIlaNG~V~N 541 (653)
+.+.| +..+-+..+.+..++. .+|.+|+.|...-.+|.+.-
T Consensus 108 ~i~~G~~~~~~~~~~y~p~~ls~~p~~~~~~~~iDVAli~vs~~D~~G~~s~ 159 (455)
T 3qli_A 108 LIRRGIEDGGRKVVNYVPSNFHQAPRLLAEEIGIDTFMHTVSPMDCHGYFSL 159 (455)
T ss_dssp HHHHHHHTTTCCCCCCCCCCGGGHHHHHHTTTCCSEEEEEECCCCTTSEEEC
T ss_pred HHhCCCcccCcCcEEEECccHHHHHHHHHhcCCCCEEEEEEecCCCCceEEE
Confidence 77777 4445556788888886 58999999999999998754
No 63
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=61.11 E-value=30 Score=33.45 Aligned_cols=37 Identities=19% Similarity=-0.029 Sum_probs=30.5
Q ss_pred hHHHHHHHHHh--CCCCEEEEccchHHHHhhhccEEEEc
Q 006256 493 EGKLLLRRLVR--KGLSCTYTHINAISYIIHEVTRVFLG 529 (653)
Q Consensus 493 EG~~La~eL~~--~GI~vT~I~DsAv~~iM~~Vd~VllG 529 (653)
+=.++++.+.+ .|+++..|+++.-+.+-+.+|.+|.-
T Consensus 121 ~~i~~~~~ak~~~~Ga~vI~IT~~~~s~La~~aD~~l~~ 159 (220)
T 3etn_A 121 EIVELTQLAHNLNPGLKFIVITGNPDSPLASESDVCLST 159 (220)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEESCTTSHHHHHSSEEEEC
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCChhHHhCCEEEEc
Confidence 44566788889 99999999998878888889998873
No 64
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=61.00 E-value=34 Score=34.45 Aligned_cols=101 Identities=9% Similarity=0.115 Sum_probs=56.4
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc-----------chHHHHhh-
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-----------NAISYIIH- 521 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D-----------sAv~~iM~- 521 (653)
...+++|-|.+.++..++..+.+.| -+|++. .|.+.+.. ..+...|..+..+.. ..+-..+.
T Consensus 85 ~~~i~~~~g~~~a~~~~~~~l~~~g--d~vl~~--~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~ 158 (391)
T 3dzz_A 85 EDWCVFASGVVPAISAMVRQFTSPG--DQILVQ--EPVYNMFY--SVIEGNGRRVISSDLIYENSKYSVNWADLEEKLAT 158 (391)
T ss_dssp GGGEEEESCHHHHHHHHHHHHSCTT--CEEEEC--SSCCHHHH--HHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTS
T ss_pred HHHEEECCCHHHHHHHHHHHhCCCC--CeEEEC--CCCcHHHH--HHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhc
Confidence 3467777777778866666654333 345543 35665543 334456777666532 23333443
Q ss_pred -hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 522 -~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
++..|++ .+.--..|.+++.---..++-+|+.|++.+++
T Consensus 159 ~~~~~v~i-~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 198 (391)
T 3dzz_A 159 PSVRMMVF-CNPHNPIGYAWSEEEVKRIAELCAKHQVLLIS 198 (391)
T ss_dssp TTEEEEEE-ESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred cCceEEEE-ECCCCCCCcccCHHHHHHHHHHHHHCCCEEEE
Confidence 4445544 22223345555444445667789999998776
No 65
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=60.77 E-value=16 Score=39.16 Aligned_cols=92 Identities=10% Similarity=0.109 Sum_probs=59.4
Q ss_pred CCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHh-----hhccEEEEc
Q 006256 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYII-----HEVTRVFLG 529 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM-----~~Vd~VllG 529 (653)
++.|+..|++..=..+.+.+.+.| +.|+|+|..|. .+.+|.+.|+++.+- |..=..++ .+++.||+.
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g--~~vvvId~d~~-----~v~~~~~~g~~vi~G-Dat~~~~L~~agi~~A~~viv~ 75 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSG--VKMVVLDHDPD-----HIETLRKFGMKVFYG-DATRMDLLESAGAAKAEVLINA 75 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTT--CCEEEEECCHH-----HHHHHHHTTCCCEES-CTTCHHHHHHTTTTTCSEEEEC
T ss_pred CCeEEEECCCHHHHHHHHHHHHCC--CCEEEEECCHH-----HHHHHHhCCCeEEEc-CCCCHHHHHhcCCCccCEEEEC
Confidence 466889999876555555565555 56777787754 356777889987654 33322233 367888776
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCCeeeec
Q 006256 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (653)
Q Consensus 530 AdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~a 563 (653)
.+ +..-+..+++.||.++..+.|++
T Consensus 76 ~~---------~~~~n~~i~~~ar~~~p~~~Iia 100 (413)
T 3l9w_A 76 ID---------DPQTNLQLTEMVKEHFPHLQIIA 100 (413)
T ss_dssp CS---------SHHHHHHHHHHHHHHCTTCEEEE
T ss_pred CC---------ChHHHHHHHHHHHHhCCCCeEEE
Confidence 54 24556778889999876544433
No 66
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=60.30 E-value=75 Score=32.38 Aligned_cols=102 Identities=18% Similarity=0.207 Sum_probs=56.8
Q ss_pred CCEEEEeCChHHHHHHHHHHHH--cCCeeEEEEeCCCCCchHHHH-HHHHHhCCCCEEEEccc--------hHHHHhhhc
Q 006256 455 GDVLLTYGSSSAVEMILQHAHE--LGKQFRVVIVDSRPKHEGKLL-LRRLVRKGLSCTYTHIN--------AISYIIHEV 523 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~e--~gk~f~ViV~ESRP~~EG~~L-a~eL~~~GI~vT~I~Ds--------Av~~iM~~V 523 (653)
..+++|.|.+.++..+|+.+.+ .+..-+|++. .|.+.+... +..+...|+.+.++... .+-..+.+=
T Consensus 86 ~~v~~~~ggt~a~~~a~~~l~~~~~~~gd~Vl~~--~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~ 163 (423)
T 3lvm_A 86 REIVFTSGATESDNLAIKGAANFYQKKGKHIITS--KTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRDD 163 (423)
T ss_dssp GGEEEESSHHHHHHHHHHHHHHHHTTTCCEEEEE--TTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHCCTT
T ss_pred CeEEEeCChHHHHHHHHHHHHHhhccCCCEEEEC--CccchHHHHHHHHHHHcCCEEEEeccCCCCccCHHHHHHhcCCC
Confidence 3678888877777666665543 1223455554 355555433 34556789998888632 222223221
Q ss_pred cEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 524 d~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
.++|+=..---..|.+.. --.|+-+|+.|++.+++
T Consensus 164 ~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~ 198 (423)
T 3lvm_A 164 TILVSIMHVNNEIGVVQD---IAAIGEMCRARGIIYHV 198 (423)
T ss_dssp EEEEECCSBCTTTCBBCC---HHHHHHHHHHHTCEEEE
T ss_pred cEEEEEeCCCCCCccccC---HHHHHHHHHHcCCEEEE
Confidence 233332222223455544 34577789999987765
No 67
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=59.45 E-value=87 Score=27.04 Aligned_cols=58 Identities=16% Similarity=0.118 Sum_probs=31.7
Q ss_pred hCCCC---EEEEccchHHHHh---h--hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeecc
Q 006256 503 RKGLS---CTYTHINAISYII---H--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCE 564 (653)
Q Consensus 503 ~~GI~---vT~I~DsAv~~iM---~--~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~ae 564 (653)
+.|++ +.+......-.++ . ++|+|++|++.-- | +---.|+..-.+ .++..+||+|+-+
T Consensus 82 ~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~--~-~~~~~Gs~~~~v-l~~~~~pVlvv~~ 147 (150)
T 3tnj_A 82 TLGIDPAHRWLVWGEPREEIIRIAEQENVDLIVVGSHGRH--G-LALLLGSTANSV-LHYAKCDVLAVRL 147 (150)
T ss_dssp HHTCCGGGEEEEESCHHHHHHHHHHHTTCSEEEEEEC-----------CCCHHHHH-HHHCSSEEEEEEC
T ss_pred HcCCCcceEEEecCCHHHHHHHHHHHcCCCEEEEecCCCC--C-cCeEecchHHHH-HHhCCCCEEEEeC
Confidence 35776 3333333333333 3 7999999998632 2 223456665555 4556799999754
No 68
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=59.42 E-value=83 Score=26.84 Aligned_cols=58 Identities=12% Similarity=0.053 Sum_probs=34.6
Q ss_pred HHhCCCCE--EEEc-cchHHHHh---h--hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeecc
Q 006256 501 LVRKGLSC--TYTH-INAISYII---H--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCE 564 (653)
Q Consensus 501 L~~~GI~v--T~I~-DsAv~~iM---~--~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~ae 564 (653)
+.+.|+++ +.+. ......++ . ++|+|++|.+ .+ . ..+.|+. .--+.++.++||+|+-+
T Consensus 73 ~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~---~~-~-~~~lgs~-~~~vl~~~~~pVlvv~~ 138 (141)
T 1jmv_A 73 AESVDYPISEKLSGSGDLGQVLSDAIEQYDVDLLVTGHH---QD-F-WSKLMSS-TRQVMNTIKIDMLVVPL 138 (141)
T ss_dssp HHHSSSCCCCEEEEEECHHHHHHHHHHHTTCCEEEEEEC---CC-C-HHHHHHH-HHHHHTTCCSEEEEEEC
T ss_pred HHHcCCCceEEEEecCCHHHHHHHHHHhcCCCEEEEeCC---Cc-h-hhhhcch-HHHHHhcCCCCEEEeeC
Confidence 34568875 2332 22333333 2 4999999987 22 2 3446743 33456777899999843
No 69
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2
Probab=59.34 E-value=37 Score=33.37 Aligned_cols=102 Identities=10% Similarity=0.026 Sum_probs=57.6
Q ss_pred CEEEEeCChHHHH-HHHHHHHHcCCeeEEEEeCCCCC---chHHHHHHHHHhCCCCEEEEc--c-chHHHHhhhccEEEE
Q 006256 456 DVLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPK---HEGKLLLRRLVRKGLSCTYTH--I-NAISYIIHEVTRVFL 528 (653)
Q Consensus 456 dvILT~g~Ss~Ve-~vL~~A~e~gk~f~ViV~ESRP~---~EG~~La~eL~~~GI~vT~I~--D-sAv~~iM~~Vd~Vll 528 (653)
.+||..|-+..+. .+++.+.+.| ++|+++.-.+. .+..+.+..|...|+.+.... | ..+..++..+|.||.
T Consensus 5 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~ 82 (313)
T 1qyd_A 5 SRVLIVGGTGYIGKRIVNASISLG--HPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVIS 82 (313)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHTT--CCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEE
T ss_pred CEEEEEcCCcHHHHHHHHHHHhCC--CcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEEEE
Confidence 4677777543332 2334444555 56666644332 122333345666676543321 2 345666777777765
Q ss_pred cceeEecCCCeecccchHHHHHHHhhCC-CCeeee
Q 006256 529 GASSVLSNGTVCSRVGTACVAMVAYGFH-IPVLVC 562 (653)
Q Consensus 529 GAdaIlaNG~V~NKiGT~~lAl~Ak~~~-VPVyV~ 562 (653)
-|-.... -.|-.|+..+.-+|+..+ +.-+|.
T Consensus 83 ~a~~~~~---~~~~~~~~~l~~aa~~~g~v~~~v~ 114 (313)
T 1qyd_A 83 ALAGGVL---SHHILEQLKLVEAIKEAGNIKRFLP 114 (313)
T ss_dssp CCCCSSS---STTTTTHHHHHHHHHHSCCCSEEEC
T ss_pred CCccccc---hhhHHHHHHHHHHHHhcCCCceEEe
Confidence 4432111 126778999999999998 888774
No 70
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=59.28 E-value=19 Score=35.47 Aligned_cols=74 Identities=18% Similarity=0.222 Sum_probs=46.5
Q ss_pred EEEEeCChHHHHHHHHHHHHcCC-eeEEEEeC-CCCCchHHHHHHHHHhCCCCEEEEcc----------chHHHHhh--h
Q 006256 457 VLLTYGSSSAVEMILQHAHELGK-QFRVVIVD-SRPKHEGKLLLRRLVRKGLSCTYTHI----------NAISYIIH--E 522 (653)
Q Consensus 457 vILT~g~Ss~Ve~vL~~A~e~gk-~f~ViV~E-SRP~~EG~~La~eL~~~GI~vT~I~D----------sAv~~iM~--~ 522 (653)
.||.-|.++.++.+|... +.+. .++|..+= .+|...|.+.| .+.|||+.++.. ..+...+. +
T Consensus 11 ~vl~SG~gsnl~all~~~-~~~~l~~~I~~Visn~~~a~~l~~A---~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~ 86 (209)
T 4ds3_A 11 VIFISGGGSNMEALIRAA-QAPGFPAEIVAVFSDKAEAGGLAKA---EAAGIATQVFKRKDFASKEAHEDAILAALDVLK 86 (209)
T ss_dssp EEEESSCCHHHHHHHHHH-TSTTCSEEEEEEEESCTTCTHHHHH---HHTTCCEEECCGGGSSSHHHHHHHHHHHHHHHC
T ss_pred EEEEECCcHHHHHHHHHH-HcCCCCcEEEEEEECCcccHHHHHH---HHcCCCEEEeCccccCCHHHHHHHHHHHHHhcC
Confidence 578888999987766554 4443 45554333 47777775443 467999998752 34444554 5
Q ss_pred ccEEEEcc-eeEe
Q 006256 523 VTRVFLGA-SSVL 534 (653)
Q Consensus 523 Vd~VllGA-daIl 534 (653)
+|.+++-+ -.|+
T Consensus 87 ~Dliv~agy~~il 99 (209)
T 4ds3_A 87 PDIICLAGYMRLL 99 (209)
T ss_dssp CSEEEESSCCSCC
T ss_pred CCEEEEeccccCc
Confidence 88887754 3444
No 71
>1xr4_A Putative citrate lyase alpha chain/citrate-ACP TR; the midwest center for structural genomics, MCSG, structural genomics; 2.37A {Salmonella typhimurium} SCOP: c.124.1.2 c.124.1.2
Probab=58.83 E-value=38 Score=37.56 Aligned_cols=115 Identities=14% Similarity=0.165 Sum_probs=68.4
Q ss_pred HHHHHh--ccCCCEEEEeCCh----HHHHHHHHHHHHcC-CeeEEEEeCCCCC-------------------chHHHHHH
Q 006256 446 KHAVTK--IRDGDVLLTYGSS----SAVEMILQHAHELG-KQFRVVIVDSRPK-------------------HEGKLLLR 499 (653)
Q Consensus 446 ~~a~~~--I~dGdvILT~g~S----s~Ve~vL~~A~e~g-k~f~ViV~ESRP~-------------------~EG~~La~ 499 (653)
+.|+++ |++|++|...+.. .++..+.+++.+++ ++++++-....+. +-|..+ +
T Consensus 50 eEAv~~~~IkdG~tV~~gg~~G~P~~Li~AL~~r~~~~g~kdLtli~~s~g~~~~~l~~~i~~g~v~r~~~~~~g~~~-r 128 (509)
T 1xr4_A 50 EEAIRRSGLKNGMTISFHHAFRGGDKVVNMVMAKLAEMGFRDLTLASSSLIDAHWPLIEHIKNGVVRQIYTSGLRGKL-G 128 (509)
T ss_dssp HHHHHHTTCCTTCEEEECCTTGGGCCHHHHHHHHHHHTTCCSEEEEESCCCGGGTTHHHHHHTTSEEEEEESBCCHHH-H
T ss_pred HHHhcCCCCCCcCEEEECCccCCHHHHHHHHHHHHHhcCCcceEEEecCCcCcchhHHHHhhcCceEEEEEccCCHHH-H
Confidence 355667 8999999988754 35555555555444 4677775422221 112222 2
Q ss_pred HHHh---CCCCEEEEccchHHHHhh----hccEEEEcceeEecCCCeecccc-----hHHHHHHHhhCCCCeee
Q 006256 500 RLVR---KGLSCTYTHINAISYIIH----EVTRVFLGASSVLSNGTVCSRVG-----TACVAMVAYGFHIPVLV 561 (653)
Q Consensus 500 eL~~---~GI~vT~I~DsAv~~iM~----~Vd~VllGAdaIlaNG~V~NKiG-----T~~lAl~Ak~~~VPVyV 561 (653)
++.+ ..+++.|..-....+++. .+|..|+.|...-.+|.+.-+-| +...+.++.....-|++
T Consensus 129 ~~i~~G~~~~P~~~s~~~g~p~ll~~~~l~iDVAlI~as~aD~~Gnls~~~g~~~~~s~~~~~a~a~~A~~VIa 202 (509)
T 1xr4_A 129 EEISAGLMENPVQIHSHGGRVKLIQSGELNIDVAFLGVPCCDEFGNANGFSGKSRCGSLGYAQVDAQYAKCVVL 202 (509)
T ss_dssp HHHHHTCCSSCEEECCHHHHHHHHHTTSSCCSEEEEEESEEETTCCEESSSSSSCCCCCTTHHHHHHHCSEEEE
T ss_pred HHHHcCCCcCCeeEeccCCHHHHHhcCCCCceEEEEEeccCCCCceEEEeCCCCcccchHHHHHHHhhCCEEEE
Confidence 2322 236777764334677775 58999999999999999874323 44444545554444444
No 72
>2oas_A ATOA, 4-hydroxybutyrate coenzyme A transferase; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; HET: COA; 2.40A {Shewanella oneidensis}
Probab=58.81 E-value=12 Score=40.75 Aligned_cols=97 Identities=12% Similarity=0.145 Sum_probs=58.5
Q ss_pred HHHHHhccCCCEEEEeCChHHHHHHHHHHHHcC---CeeEEEEeCC-C----------------CCchHHHHHHHHHhCC
Q 006256 446 KHAVTKIRDGDVLLTYGSSSAVEMILQHAHELG---KQFRVVIVDS-R----------------PKHEGKLLLRRLVRKG 505 (653)
Q Consensus 446 ~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~g---k~f~ViV~ES-R----------------P~~EG~~La~eL~~~G 505 (653)
+.|+++|++|++|...|+...-+.++....+++ ++++++..-+ . +++-|..+.+...+-+
T Consensus 10 eeAv~~IkdG~tI~~ggf~g~P~~Li~AL~~r~~~~kdLtl~~~~s~g~~~~~~~~l~~~i~~~~~~~~~~lr~~i~~G~ 89 (436)
T 2oas_A 10 LEAVSLIRSGETLWTHSMGATPKVLLDALAKHALTLDNITLLQLHTEGAESLSHPSLLGHLRHRCFFGGVPTRPLLQSGD 89 (436)
T ss_dssp HHHHTTCCTTCEEEECCBTTCCHHHHHHHHHHGGGCCSEEEEESSBSSCGGGGSGGGTTTEEEEESSCCTTTHHHHHTTS
T ss_pred HHHHhhCCCCCEEEECCccCcHHHHHHHHHHhhccCCCEEEEEecccCChhhhHHHhcCcEEEeecCCCHHHHHHHHcCC
Confidence 456778999999999887533333344444332 6788876321 1 1222223333333344
Q ss_pred CCEEEEccchHHHHhh----hccEEEEcceeEecCCCeecc
Q 006256 506 LSCTYTHINAISYIIH----EVTRVFLGASSVLSNGTVCSR 542 (653)
Q Consensus 506 I~vT~I~DsAv~~iM~----~Vd~VllGAdaIlaNG~V~NK 542 (653)
+..+-+..+.+..++. .+|..|+.|...-.+|.+.-.
T Consensus 90 ~~y~P~~ls~~~~~l~~~~l~~DVAlI~as~aD~~Gn~s~~ 130 (436)
T 2oas_A 90 ADYVPIFLSEVPKLFRSGEQKIDTAIIQVSPPDKHGMCSLG 130 (436)
T ss_dssp SEECCCCGGGHHHHHHTTSSCCSEEEEEECCCCTTCEEECT
T ss_pred CeeeCCccccHHHHHHcCCCCCCEEEEEeccCCCCceEEEe
Confidence 4444444555554444 589999999999999987643
No 73
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=57.93 E-value=1.2e+02 Score=28.04 Aligned_cols=36 Identities=3% Similarity=-0.208 Sum_probs=28.0
Q ss_pred hHHHHHHHHHhCCCCEEEEccchHHHHhhh---ccEEEE
Q 006256 493 EGKLLLRRLVRKGLSCTYTHINAISYIIHE---VTRVFL 528 (653)
Q Consensus 493 EG~~La~eL~~~GI~vT~I~DsAv~~iM~~---Vd~Vll 528 (653)
+=.++++.+.+.|+++..|+++.-+.+.+. +|.+|.
T Consensus 124 ~~i~~~~~ak~~g~~vI~IT~~~~s~la~~~~~ad~~l~ 162 (196)
T 2yva_A 124 DIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIR 162 (196)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHTTCCTTSEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCchhhhcccCCCEEEE
Confidence 335566888899999999999877777666 888775
No 74
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=57.70 E-value=1.4e+02 Score=29.51 Aligned_cols=101 Identities=16% Similarity=0.254 Sum_probs=55.9
Q ss_pred CCEEEEeCChHHHHHHHHHHHH--cCCeeEEEEeCCCCCchHHHH-HHHHHhCCCCEEEEccc--------hHHHHhh-h
Q 006256 455 GDVLLTYGSSSAVEMILQHAHE--LGKQFRVVIVDSRPKHEGKLL-LRRLVRKGLSCTYTHIN--------AISYIIH-E 522 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~e--~gk~f~ViV~ESRP~~EG~~L-a~eL~~~GI~vT~I~Ds--------Av~~iM~-~ 522 (653)
..+++|-|.+.++..+++.+.. ....-+|++. .|.+.+... +..+...|+.+..+... .+-..+. +
T Consensus 62 ~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~--~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~ 139 (384)
T 1eg5_A 62 SEIFFTSCATESINWILKTVAETFEKRKRTIITT--PIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDED 139 (384)
T ss_dssp GGEEEESCHHHHHHHHHHHHHHHTTTTCCEEEEC--TTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCTT
T ss_pred CeEEEECCHHHHHHHHHHhhhhhccCCCCEEEEC--CCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhCCC
Confidence 4677777777788776666542 0122355553 455655533 45566779888777531 2222222 3
Q ss_pred ccEEEEcceeEecCCCeecccchHHHHHHHhhCC--CCeee
Q 006256 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFH--IPVLV 561 (653)
Q Consensus 523 Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~--VPVyV 561 (653)
+.+|++ ..--...|.++. --.|+-+|++|+ +.+++
T Consensus 140 ~~~v~~-~~~~nptG~~~~---~~~i~~l~~~~~~~~~li~ 176 (384)
T 1eg5_A 140 TFLVSI-MAANNEVGTIQP---VEDVTRIVKKKNKETLVHV 176 (384)
T ss_dssp EEEEEE-ESBCTTTCBBCC---HHHHHHHHHHHCTTCEEEE
T ss_pred CeEEEE-ECCCCCcccccC---HHHHHHHHHhcCCceEEEE
Confidence 334443 222223466555 256777889999 76554
No 75
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*
Probab=57.58 E-value=1.3e+02 Score=31.22 Aligned_cols=108 Identities=13% Similarity=0.039 Sum_probs=67.6
Q ss_pred HHHHHHHhccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCC---------CCc---------hHHHHHHHHHhC-
Q 006256 444 IVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSR---------PKH---------EGKLLLRRLVRK- 504 (653)
Q Consensus 444 Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESR---------P~~---------EG~~La~eL~~~- 504 (653)
++..+.+.+. +..||..|.+.+=..++..+...|.. ++.++|.. -.+ --..++..|.+.
T Consensus 26 ~G~~~q~~L~-~~~VlivG~GGlG~~ia~~La~~Gvg-~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~ln 103 (346)
T 1y8q_A 26 WGLEAQKRLR-ASRVLLVGLKGLGAEIAKNLILAGVK-GLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLN 103 (346)
T ss_dssp HCHHHHHHHH-TCEEEEECCSHHHHHHHHHHHHHTCS-EEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTC
T ss_pred hCHHHHHHHh-CCeEEEECCCHHHHHHHHHHHHcCCC-EEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHC
Confidence 5566777776 57888898876555566666666765 44444322 111 123344677764
Q ss_pred -CCCEEEEccch---HHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeee
Q 006256 505 -GLSCTYTHINA---ISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (653)
Q Consensus 505 -GI~vT~I~DsA---v~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~ 562 (653)
++.++.+...- ...++...|.||.+.|.+ ---+.+.-+|+.+++||+.+
T Consensus 104 p~v~v~~~~~~~~~~~~~~~~~~dvVv~~~d~~---------~~r~~ln~~~~~~~ip~i~~ 156 (346)
T 1y8q_A 104 PMVDVKVDTEDIEKKPESFFTQFDAVCLTCCSR---------DVIVKVDQICHKNSIKFFTG 156 (346)
T ss_dssp TTSEEEEECSCGGGCCHHHHTTCSEEEEESCCH---------HHHHHHHHHHHHTTCEEEEE
T ss_pred CCeEEEEEecccCcchHHHhcCCCEEEEcCCCH---------HHHHHHHHHHHHcCCCEEEE
Confidence 57777765421 345667899998776543 22345777899999999875
No 76
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=57.01 E-value=42 Score=33.63 Aligned_cols=102 Identities=12% Similarity=0.065 Sum_probs=55.8
Q ss_pred cCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc------chHHHHhh-hccE
Q 006256 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI------NAISYIIH-EVTR 525 (653)
Q Consensus 453 ~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D------sAv~~iM~-~Vd~ 525 (653)
....+++|-|.+.++..+++.+.+.| -+|++.+ |.+.+... .+...|+.+..+.. ..+-..+. +...
T Consensus 80 ~~~~i~~t~g~~~a~~~~~~~~~~~g--d~vl~~~--~~~~~~~~--~~~~~g~~~~~~~~~~~~d~~~l~~~l~~~~~~ 153 (377)
T 3fdb_A 80 RPEWIFPIPDVVRGLYIAIDHFTPAQ--SKVIVPT--PAYPPFFH--LLSATQREGIFIDATGGINLHDVEKGFQAGARS 153 (377)
T ss_dssp CGGGEEEESCHHHHHHHHHHHHSCTT--CCEEEEE--SCCTHHHH--HHHHHTCCEEEEECTTSCCHHHHHHHHHTTCCE
T ss_pred CHHHEEEeCChHHHHHHHHHHhcCCC--CEEEEcC--CCcHhHHH--HHHHcCCEEEEccCCCCCCHHHHHHHhccCCCE
Confidence 34467888777778876666554333 3455543 55655433 34446888888753 23333443 3444
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 526 VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
|++-. ---..|.++..---..++-+|+.|++.+++
T Consensus 154 v~i~~-p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 188 (377)
T 3fdb_A 154 ILLCN-PYNPLGMVFAPEWLNELCDLAHRYDARVLV 188 (377)
T ss_dssp EEEES-SBTTTTBCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred EEEeC-CCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 44321 112234433333334456678999988876
No 77
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=56.96 E-value=79 Score=32.58 Aligned_cols=100 Identities=17% Similarity=0.097 Sum_probs=58.2
Q ss_pred CCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc-----------chHHHHhh--
Q 006256 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-----------NAISYIIH-- 521 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D-----------sAv~~iM~-- 521 (653)
..+++|-|.+.+++.+|+.+. +..-+|++.+ |.+.|...+ +...|..+..+.. ..+-..+.
T Consensus 120 ~~v~~~~g~~ea~~~a~~~~~--~~gd~Vi~~~--~~y~~~~~~--~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~~ 193 (421)
T 3l8a_A 120 EDILFIDGVVPAISIALQAFS--EKGDAVLINS--PVYYPFART--IRLNDHRLVENSLQIINGRFEIDFEQLEKDIIDN 193 (421)
T ss_dssp GGEEEESCHHHHHHHHHHHHS--CTEEEEEEEE--SCCHHHHHH--HHHTTEEEEEEECEEETTEEECCHHHHHHHHHHT
T ss_pred HHEEEcCCHHHHHHHHHHHhc--CCCCEEEECC--CCcHHHHHH--HHHCCCEEEeccccccCCCeeeCHHHHHHHhhcc
Confidence 456777776778877777664 3344566543 666665433 3446766665531 23444443
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 522 ~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
++.+|++ ..---..|.++.+----.++-+|++|++.+++
T Consensus 194 ~~~~vil-~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~ 232 (421)
T 3l8a_A 194 NVKIYLL-CSPHNPGGRVWDNDDLIKIAELCKKHGVILVS 232 (421)
T ss_dssp TEEEEEE-ESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred CCeEEEE-CCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 4555555 33333345454444455677789999987775
No 78
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=56.74 E-value=36 Score=30.68 Aligned_cols=44 Identities=16% Similarity=0.132 Sum_probs=25.4
Q ss_pred hccEEEEcceeEecCCCeec-ccchHHHHHHHhhCCCCeeeeccccccc
Q 006256 522 EVTRVFLGASSVLSNGTVCS-RVGTACVAMVAYGFHIPVLVCCEAYKFH 569 (653)
Q Consensus 522 ~Vd~VllGAdaIlaNG~V~N-KiGT~~lAl~Ak~~~VPVyV~aetyKf~ 569 (653)
++|+|++|++.- |.+-. -.|+..-.+ .++.++||+|+-+..+-.
T Consensus 124 ~~DLIVmG~~g~---~~~~~~~~Gsva~~v-l~~a~~pVlvv~~~~~~~ 168 (175)
T 2gm3_A 124 RPDFLVVGSRGL---GRFQKVFVGTVSAFC-VKHAECPVMTIKRNADET 168 (175)
T ss_dssp CCSEEEEEECCC---C--------CHHHHH-HHHCSSCEEEEECCGGGS
T ss_pred CCCEEEEeCCCC---ChhhhhhcCchHHHH-HhCCCCCEEEEcCCcCCC
Confidence 599999998753 22211 256554444 455679999997654433
No 79
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=56.71 E-value=1.6e+02 Score=29.21 Aligned_cols=96 Identities=17% Similarity=0.196 Sum_probs=51.4
Q ss_pred CEEEEeCChHHHHHHHHHHH----HcCCeeEEEEeCCCCCchHHHHH-HHHHhCCCCEEEEccc--------hHHHHhhh
Q 006256 456 DVLLTYGSSSAVEMILQHAH----ELGKQFRVVIVDSRPKHEGKLLL-RRLVRKGLSCTYTHIN--------AISYIIHE 522 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~----e~gk~f~ViV~ESRP~~EG~~La-~eL~~~GI~vT~I~Ds--------Av~~iM~~ 522 (653)
.+++|.|.+.++..++..+. +.|. +|++. .|.+.+...+ ..|...|+.+.++... .+-..+.+
T Consensus 62 ~v~~~~g~t~a~~~~~~~l~~~~~~~gd--~Vl~~--~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~ 137 (382)
T 4eb5_A 62 TVVFTSGATEANNLAIIGYAMRNARKGK--HILVS--AVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRD 137 (382)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHGGGCC--EEEEE--TTCCHHHHHHHHHHTTTTCEEEEECBCTTSCBCHHHHHHHCCT
T ss_pred eEEEcCchHHHHHHHHHHHHhhccCCCC--EEEEC--CCcchHHHHHHHHHHhCCcEEEEeccCCCCccCHHHHHHHhcC
Confidence 56777776777766666554 3443 56654 3444444333 4455679988888521 22222221
Q ss_pred ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCC
Q 006256 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIP 558 (653)
Q Consensus 523 Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VP 558 (653)
-.++|+-.+--...|.++. --.++-+|++|++.
T Consensus 138 ~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~ 170 (382)
T 4eb5_A 138 DTILVSVQHANNEIGTIQP---VEEISEVLAGKAAL 170 (382)
T ss_dssp TEEEEECCSBCTTTCBBCC---HHHHHHHHTTSSEE
T ss_pred CCeEEEEeccCCCccccCC---HHHHHHHHHHCCCE
Confidence 1233333322223355544 24677788999876
No 80
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=56.68 E-value=14 Score=42.19 Aligned_cols=69 Identities=14% Similarity=0.262 Sum_probs=45.5
Q ss_pred CEEEEeCChH--HHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHh---CCCCEEEEccchHHHHhh-hccEEE
Q 006256 456 DVLLTYGSSS--AVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR---KGLSCTYTHINAISYIIH-EVTRVF 527 (653)
Q Consensus 456 dvILT~g~Ss--~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~---~GI~vT~I~DsAv~~iM~-~Vd~Vl 527 (653)
.+||..|.++ .+...|+.+.+.+++++||.+|--|. ...++++.+ .+=.||+|.-.+=-.-++ +||.+|
T Consensus 359 ~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~---A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIV 433 (637)
T 4gqb_A 359 QVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPN---AVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIV 433 (637)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHH---HHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEE
T ss_pred cEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHH---HHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEE
Confidence 5799998776 67778888888889999999998774 334444332 233577776443322333 566665
No 81
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=56.59 E-value=1.3e+02 Score=29.93 Aligned_cols=100 Identities=15% Similarity=0.106 Sum_probs=55.7
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHc-----------CCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc--------
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHEL-----------GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-------- 514 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~-----------gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds-------- 514 (653)
...+++|.|.+.++..++..+... ++.-+|++.+ |.+.+..-+ +...|+.+..+...
T Consensus 86 ~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~~gd~vl~~~--~~~~~~~~~--~~~~g~~~~~v~~~~~~~~d~~ 161 (397)
T 3f9t_A 86 DAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSKNEHPKIIVPI--TAHFSFEKG--REMMDLEYIYAPIKEDYTIDEK 161 (397)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCEEEEET--TCCTHHHHH--HHHHTCEEEEECBCTTSSBCHH
T ss_pred CCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEECC--cchhHHHHH--HHHcCceeEEEeeCCCCcCCHH
Confidence 345677777777777777666543 1234566643 455553322 33348888888532
Q ss_pred hHHHHhhh--ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 515 AISYIIHE--VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 515 Av~~iM~~--Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
.+-..+.+ ..+|++- .--...|.+.. --.|+-+|++|++.+++
T Consensus 162 ~l~~~i~~~~~~~v~~~-~~~nptG~~~~---l~~i~~l~~~~~~~li~ 206 (397)
T 3f9t_A 162 FVKDAVEDYDVDGIIGI-AGTTELGTIDN---IEELSKIAKENNIYIHV 206 (397)
T ss_dssp HHHHHHHHSCCCEEEEE-BSCTTTCCBCC---HHHHHHHHHHHTCEEEE
T ss_pred HHHHHHhhcCCeEEEEE-CCCCCCCCCCC---HHHHHHHHHHhCCeEEE
Confidence 33334443 4444432 22233444432 34577789999987776
No 82
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=56.37 E-value=94 Score=26.49 Aligned_cols=36 Identities=19% Similarity=0.261 Sum_probs=24.5
Q ss_pred hccEEEEcceeEecCCCeec-ccchHHHHHHHhhCCCCeeee
Q 006256 522 EVTRVFLGASSVLSNGTVCS-RVGTACVAMVAYGFHIPVLVC 562 (653)
Q Consensus 522 ~Vd~VllGAdaIlaNG~V~N-KiGT~~lAl~Ak~~~VPVyV~ 562 (653)
++|++++|++. +| +-. -.|+..-. +.++.++||+|+
T Consensus 106 ~~dliV~G~~~---~~-~~~~~~Gs~~~~-v~~~~~~pVlvv 142 (143)
T 3fdx_A 106 PADLVIIASHR---PD-ITTYLLGSNAAA-VVRHAECSVLVV 142 (143)
T ss_dssp TCSEEEEESSC---TT-CCSCSSCHHHHH-HHHHCSSEEEEE
T ss_pred CCCEEEEeCCC---CC-CeeeeeccHHHH-HHHhCCCCEEEe
Confidence 69999999983 33 322 24665444 456778999986
No 83
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=56.04 E-value=62 Score=32.53 Aligned_cols=98 Identities=17% Similarity=0.148 Sum_probs=54.4
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc--------chHHHHhh--hccE
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIH--EVTR 525 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D--------sAv~~iM~--~Vd~ 525 (653)
.+++|.|.+.++..+++.+.+.| -+|++.+ |.+-|..+...+...|+.+.++.. ..+-..+. ++..
T Consensus 72 ~i~~~~g~t~a~~~~~~~~~~~g--d~vl~~~--~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~ 147 (393)
T 2huf_A 72 TFCLSASGHGGMEATLCNLLEDG--DVILIGH--TGHWGDRSADMATRYGADVRVVKSKVGQSLSLDEIRDALLIHKPSV 147 (393)
T ss_dssp EEEESSCHHHHHHHHHHHHCCTT--CEEEEEE--SSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSE
T ss_pred EEEEcCcHHHHHHHHHHHHhCCC--CEEEEEC--CCcchHHHHHHHHHcCCeeEEEeCCCCCCCCHHHHHHHHhccCCcE
Confidence 35666676777766666654333 3566654 334444333444567888877752 12333333 3555
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 526 VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
|++ .+.--..|.+.. --.++-+|++|++.+++
T Consensus 148 v~~-~~~~nptG~~~~---l~~i~~~~~~~~~~li~ 179 (393)
T 2huf_A 148 LFL-TQGDSSTGVLQG---LEGVGALCHQHNCLLIV 179 (393)
T ss_dssp EEE-ESEETTTTEECC---CTTHHHHHHHTTCEEEE
T ss_pred EEE-EccCCCccccCC---HHHHHHHHHHcCCEEEE
Confidence 554 222223355444 24577788999987765
No 84
>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein., structural genomics, PSI-2, protein STR initiative; HET: CIT; 2.70A {Streptococcus mutans}
Probab=55.79 E-value=54 Score=36.50 Aligned_cols=116 Identities=19% Similarity=0.266 Sum_probs=69.4
Q ss_pred HHHHh--ccCCCEEEEeCCh----HHHHHHHHHHHHcC-CeeEEEEeCCCCCchHH------------------HHHHHH
Q 006256 447 HAVTK--IRDGDVLLTYGSS----SAVEMILQHAHELG-KQFRVVIVDSRPKHEGK------------------LLLRRL 501 (653)
Q Consensus 447 ~a~~~--I~dGdvILT~g~S----s~Ve~vL~~A~e~g-k~f~ViV~ESRP~~EG~------------------~La~eL 501 (653)
.|+++ |+||++|...|+. .++..++....+++ +.++++.....+...|. .-.+++
T Consensus 54 EAv~~~~IkdG~tV~~gGf~g~P~~l~~~Li~AL~~r~~kdLtli~~s~g~~~~~l~~~~~~g~v~r~~~~~~g~~~r~~ 133 (519)
T 2hj0_A 54 EAIEKTRLKDGMTISFHHHFREGDYVMNMVLDEIAKMGIKDISIAPSSIANVHEPLIDHIKNGVVTNITSSGLRDKVGAA 133 (519)
T ss_dssp HHHHHTTCCTTCEEEECCTTGGGBCHHHHHHHHHHHTTCCSEEEEESCCCGGGTTHHHHHHTTSEEEEEESBCHHHHHHH
T ss_pred HHHhcCCCCCCCEEEECCccCCchHHHHHHHHHHHhcCCCCeEEEeecCCCcchhHHhHhhcCcEEEEEecCCCcHHHHH
Confidence 45567 9999999999875 24445565555544 45777765222221110 112344
Q ss_pred HhCCC---CEEEEccchHHHHhh----hccEEEEcceeEecCCCeec---cc--chHHHHHHHhhCCCCeeee
Q 006256 502 VRKGL---SCTYTHINAISYIIH----EVTRVFLGASSVLSNGTVCS---RV--GTACVAMVAYGFHIPVLVC 562 (653)
Q Consensus 502 ~~~GI---~vT~I~DsAv~~iM~----~Vd~VllGAdaIlaNG~V~N---Ki--GT~~lAl~Ak~~~VPVyV~ 562 (653)
.+.|- |+.|-......+++. .+|..|+.|...-.+|.+.- +. |+...+.++.....-|++-
T Consensus 134 i~~G~~~~P~~l~~~gG~~~ll~~~~l~~DVAlI~as~aD~~Gnls~~~g~s~~~s~~~~~~~a~~A~~VIaE 206 (519)
T 2hj0_A 134 ISEGIMENPVIIRSHGGRARAIATDDIHIDVAFLGAPSSDAYGNANGTRGKTTCGSLGYAMIDAKYADQVVIV 206 (519)
T ss_dssp HHTTCCSSCEEECCHHHHHHHHHHTSSCCSEEEEEESEECTTSCEESSSSSSCCSCCHHHHHHHHHCSEEEEE
T ss_pred HHCCCCCCCceeeccCCHHHHHhcCCCCCcEEEEEecccCCCCcEEEecCccccccchhhHHHHhhCCEEEEE
Confidence 55564 555433233677775 48999999999999999873 32 3445555555555544443
No 85
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=55.69 E-value=28 Score=34.35 Aligned_cols=75 Identities=15% Similarity=0.183 Sum_probs=47.1
Q ss_pred EEEEeCChHHHHHHHHHHHHcCCeeEEEEeC-CCCCchHHHHHHHHHhCCCCEEEEc----------cchHHHHhh--hc
Q 006256 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVD-SRPKHEGKLLLRRLVRKGLSCTYTH----------INAISYIIH--EV 523 (653)
Q Consensus 457 vILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~E-SRP~~EG~~La~eL~~~GI~vT~I~----------DsAv~~iM~--~V 523 (653)
.||.-|+++.++.+|.... .|..++|..+= .+|...|.+.| .+.|||+.++. |..+...++ ++
T Consensus 9 avl~SG~Gsnl~all~~~~-~~~~~eI~~Vis~~~~a~~~~~A---~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~ 84 (215)
T 3tqr_A 9 VVLISGNGTNLQAIIGAIQ-KGLAIEIRAVISNRADAYGLKRA---QQADIPTHIIPHEEFPSRTDFESTLQKTIDHYDP 84 (215)
T ss_dssp EEEESSCCHHHHHHHHHHH-TTCSEEEEEEEESCTTCHHHHHH---HHTTCCEEECCGGGSSSHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCcHHHHHHHHHHH-cCCCCEEEEEEeCCcchHHHHHH---HHcCCCEEEeCccccCchhHhHHHHHHHHHhcCC
Confidence 3566689999977666554 44445655443 37777775544 45799998874 334445555 58
Q ss_pred cEEEEcc-eeEec
Q 006256 524 TRVFLGA-SSVLS 535 (653)
Q Consensus 524 d~VllGA-daIla 535 (653)
|.+++-+ -.|+.
T Consensus 85 Dliv~agy~~il~ 97 (215)
T 3tqr_A 85 KLIVLAGFMRKLG 97 (215)
T ss_dssp SEEEESSCCSCCC
T ss_pred CEEEEccchhhCC
Confidence 8888744 34443
No 86
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=55.39 E-value=32 Score=34.03 Aligned_cols=101 Identities=13% Similarity=0.092 Sum_probs=57.2
Q ss_pred CCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc-------hHHHHhhh-----
Q 006256 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-------AISYIIHE----- 522 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds-------Av~~iM~~----- 522 (653)
..+++|.|.+.++..+++.+.+.| -+|++. .|.+.+...+..+...|+++..+... .+-..+.+
T Consensus 67 ~~v~~~~g~t~a~~~~~~~~~~~g--d~vl~~--~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~ 142 (359)
T 1svv_A 67 ADVHFISGGTQTNLIACSLALRPW--EAVIAT--QLGHISTHETGAIEATGHKVVTAPCPDGKLRVADIESALHENRSEH 142 (359)
T ss_dssp SEEEEESCHHHHHHHHHHHHCCTT--EEEEEE--TTSHHHHSSTTHHHHTTCCEEEECCTTSCCCHHHHHHHHHHSCSTT
T ss_pred ccEEEeCCchHHHHHHHHHHhCCC--CEEEEc--ccchHHHHHHHHHhcCCCeeEEEeCCCCeecHHHHHHHHHHHHhcc
Confidence 357778787888877776664333 356654 45555543322355679998888632 33333433
Q ss_pred ---ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 523 ---VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 523 ---Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
+..|++- . ....|.++..-=-..++-+|++|++.+++
T Consensus 143 ~~~~~~v~~~-~-~~ptG~~~~~~~l~~i~~~~~~~~~~li~ 182 (359)
T 1svv_A 143 MVIPKLVYIS-N-TTEVGTQYTKQELEDISASCKEHGLYLFL 182 (359)
T ss_dssp SCEEEEEEEE-S-SCTTSCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred CCCceEEEEE-c-CCCCceecCHHHHHHHHHHHHHhCCEEEE
Confidence 3445443 2 22335555431123466788999987776
No 87
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=55.32 E-value=1.3e+02 Score=27.69 Aligned_cols=37 Identities=14% Similarity=0.020 Sum_probs=28.6
Q ss_pred chHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEE
Q 006256 492 HEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFL 528 (653)
Q Consensus 492 ~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~Vll 528 (653)
.+-.++++.+.+.|+++..|+++.-+.+.+.+|.+|.
T Consensus 130 ~~~~~~~~~ak~~g~~vI~IT~~~~s~L~~~ad~~l~ 166 (198)
T 2xbl_A 130 PNILAAFREAKAKGMTCVGFTGNRGGEMRELCDLLLE 166 (198)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECSCCCTHHHHCSEEEE
T ss_pred HHHHHHHHHHHHCCCeEEEEECCCCCcHHHhCCEEEE
Confidence 3445667888889999999998776677777888774
No 88
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=54.91 E-value=43 Score=38.95 Aligned_cols=86 Identities=15% Similarity=0.121 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhccC---CCEEEEeCChH--HHHHHHHHHHHcC---------CeeEEEEeCCCCCchHHHHHHHHHhCC-
Q 006256 441 DRVIVKHAVTKIRD---GDVLLTYGSSS--AVEMILQHAHELG---------KQFRVVIVDSRPKHEGKLLLRRLVRKG- 505 (653)
Q Consensus 441 ~~~Ia~~a~~~I~d---GdvILT~g~Ss--~Ve~vL~~A~e~g---------k~f~ViV~ESRP~~EG~~La~eL~~~G- 505 (653)
.++|.++..+++.+ +.+||..|.++ .+..+|+.+...| ...+||.+|--|.-. ..++.....|
T Consensus 393 ~~AI~~al~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~--~~l~~~~~Ng~ 470 (745)
T 3ua3_A 393 GEAVVGALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAI--VTLKYMNVRTW 470 (745)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHH--HHHHHHHHHTT
T ss_pred HHHHHHHHHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHH--HHHHHHHhcCC
Confidence 34455554555543 35899999887 4444566665445 678999999977433 2222222233
Q ss_pred -CCEEEEccchHHHHh-------hhccEEEE
Q 006256 506 -LSCTYTHINAISYII-------HEVTRVFL 528 (653)
Q Consensus 506 -I~vT~I~DsAv~~iM-------~~Vd~Vll 528 (653)
=.+|+|.-.+=-+-+ .+||.+|-
T Consensus 471 ~d~VtVI~gd~eev~lp~~~~~~ekVDIIVS 501 (745)
T 3ua3_A 471 KRRVTIIESDMRSLPGIAKDRGFEQPDIIVS 501 (745)
T ss_dssp TTCSEEEESCGGGHHHHHHHTTCCCCSEEEE
T ss_pred CCeEEEEeCchhhcccccccCCCCcccEEEE
Confidence 358888755544444 47888763
No 89
>1x87_A Urocanase protein; structural genomics, protein STR initiative, MCSG, PSI, midwest center for structural genomi; HET: MSE NAD; 2.40A {Geobacillus stearothermophilus} SCOP: e.51.1.1
Probab=54.78 E-value=39 Score=37.59 Aligned_cols=114 Identities=25% Similarity=0.344 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccc-HHHHHHHHHHHHHhc--------------------CCCccHHHHHHHHHHHHHHH
Q 006256 374 SRDLTAKISSYVSFLIDCRPLSVS-MGNAIRFLKSQIAKI--------------------PISLSESEAKATLHSDIERF 432 (653)
Q Consensus 374 ~rdL~~~L~~~i~~L~~aRPtsVs-mgNAIr~lk~~I~~~--------------------~~~~~~~eaK~~L~e~I~~f 432 (653)
..+|.+.|...-+...+-+|+|+. +||+..-+-+.+++. +.+++.+|+.+...++-+.|
T Consensus 211 ~~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~~i~~DlvtDQTSaHdp~~GY~P~g~t~ee~~~l~~~dp~~~ 290 (551)
T 1x87_A 211 TDSLDAALEMAKQAKEEKKALSIGLVGNAAEVLPRLVETGFVPDVLTDQTSAHDPLNGYIPAGLTLDEAAELRARDPKQY 290 (551)
T ss_dssp ESCHHHHHHHHHHHHHTTCCEEEEEESCHHHHHHHHHHTTCCCSEECCCSCTTCTTTTCCCTTCCHHHHHHHHHHCHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHCCCCCCCCCCCccccCcccccCCCCCCHHHHHHHHHhCHHHH
Confidence 346666777777778888999987 499988776665441 11347899999998888888
Q ss_pred HHHHHHHHHHHHHHHHH---HhccCCCEEEEeCCh-----------------HHHHHHHHHHHHcCCe-eEEEEeCCCCC
Q 006256 433 INEKIILADRVIVKHAV---TKIRDGDVLLTYGSS-----------------SAVEMILQHAHELGKQ-FRVVIVDSRPK 491 (653)
Q Consensus 433 i~E~i~~a~~~Ia~~a~---~~I~dGdvILT~g~S-----------------s~Ve~vL~~A~e~gk~-f~ViV~ESRP~ 491 (653)
.+. +.+.+.+|.. ++-..|..+.-|||+ +-|..+|+-.+..|+. ||=+++-..|.
T Consensus 291 ~~~----~~~Sm~rhv~am~~~~~~G~~~fDYGN~~r~~a~~aG~~~aF~~P~fV~~~irPlF~~G~GPFRWvalSGdpe 366 (551)
T 1x87_A 291 IAR----AKQSIAAHVRAMLAMQKQGAVTFDYGNNIRQVAKDEGVDDAFSFPGFVPAYIRPLFCEGKGPFRWVALSGDPE 366 (551)
T ss_dssp HHH----HHHHHHHHHHHHHHHHHTTCEECBCSSCHHHHHHHTTCTTGGGSCBHHHHTTHHHHHTTCEEEEEEETTCCHH
T ss_pred HHH----HHHHHHHHHHHHHHHHHCCCeeeeccHHHHHHHHhCChhhcCCCCccHHHHhhhHhhcCCCCceeEEcCCCHH
Confidence 654 6666766644 344578888888886 3355666666667774 88777766664
No 90
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=54.72 E-value=48 Score=33.49 Aligned_cols=98 Identities=18% Similarity=0.148 Sum_probs=56.7
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc--------chHHHHhh--hccE
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIH--EVTR 525 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D--------sAv~~iM~--~Vd~ 525 (653)
.+++|.|.+.++..++..+.+.|. +|++. .|.+.|..+...+...|+.+..+.. ..+-..+. ++..
T Consensus 87 ~v~~t~g~t~al~~~~~~~~~~gd--~Vl~~--~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~ 162 (393)
T 1vjo_A 87 TIAVSGTGTAAMEATIANAVEPGD--VVLIG--VAGYFGNRLVDMAGRYGADVRTISKPWGEVFSLEELRTALETHRPAI 162 (393)
T ss_dssp EEEESSCHHHHHHHHHHHHCCTTC--EEEEE--ESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSE
T ss_pred EEEEeCchHHHHHHHHHhccCCCC--EEEEE--cCChhHHHHHHHHHHcCCceEEEecCCCCCCCHHHHHHHHhhCCceE
Confidence 467777777788777766644343 56554 3666664444556668888877752 22333333 3555
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 526 VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
|++- .--...|.+.. + -.++-+|++|++.+++
T Consensus 163 v~~~-~~~nptG~~~~-l--~~i~~l~~~~~~~li~ 194 (393)
T 1vjo_A 163 LALV-HAETSTGARQP-L--EGVGELCREFGTLLLV 194 (393)
T ss_dssp EEEE-SEETTTTEECC-C--TTHHHHHHHHTCEEEE
T ss_pred EEEe-ccCCCcceecc-H--HHHHHHHHHcCCEEEE
Confidence 5542 22233455543 2 3567788888987665
No 91
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=54.32 E-value=1.6e+02 Score=28.62 Aligned_cols=98 Identities=11% Similarity=0.037 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHH----HHHHHhCCCCEEEEcc---chHHHHhh-----hccEEEEccee
Q 006256 465 SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLL----LRRLVRKGLSCTYTHI---NAISYIIH-----EVTRVFLGASS 532 (653)
Q Consensus 465 s~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~L----a~eL~~~GI~vT~I~D---sAv~~iM~-----~Vd~VllGAda 532 (653)
.++...+.-|...+..++++.+.. | .+..+. ...+...|++++.... +....++. .+|+|++|.+.
T Consensus 22 ~al~~A~~la~~~~a~l~ll~v~~-~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dliV~G~~~ 99 (290)
T 3mt0_A 22 LALKRAQLIAGVTQSHLHLLVCEK-R-RDHSAALNDLAQELREEGYSVSTNQAWKDSLHQTIIAEQQAEGCGLIIKQHFP 99 (290)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEECS-S-SCCHHHHHHHHHHHHHTTCCEEEEEECSSSHHHHHHHHHHHHTCSEEEEECCC
T ss_pred HHHHHHHHHHHhcCCeEEEEEeeC-c-HHHHHHHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhcCCCEEEEeccc
Confidence 466666666766777777665433 3 333332 3556678999877542 23333333 58999999975
Q ss_pred EecCCCeec-ccchHHHHHHHhhCCCCeeeecccccc
Q 006256 533 VLSNGTVCS-RVGTACVAMVAYGFHIPVLVCCEAYKF 568 (653)
Q Consensus 533 IlaNG~V~N-KiGT~~lAl~Ak~~~VPVyV~aetyKf 568 (653)
- |.+-. -.|+..-.+ .++.++||+|+-+...+
T Consensus 100 ~---~~~~~~~~gs~~~~v-l~~~~~PVlvv~~~~~~ 132 (290)
T 3mt0_A 100 D---NPLKKAILTPDDWKL-LRFAPCPVLMTKTARPW 132 (290)
T ss_dssp S---CTTSTTSCCHHHHHH-HHHCSSCEEEECCCSCS
T ss_pred C---CchhhcccCHHHHHH-HhcCCCCEEEecCCCCC
Confidence 2 22222 256655544 56788999999755444
No 92
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=54.21 E-value=75 Score=28.95 Aligned_cols=43 Identities=14% Similarity=-0.047 Sum_probs=33.3
Q ss_pred CCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcc
Q 006256 488 SRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (653)
Q Consensus 488 SRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGA 530 (653)
|+-..+-.++++.+.+.|+++..|+++.-+.+.+.+|.+|.-.
T Consensus 106 sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~la~~ad~~l~~~ 148 (183)
T 2xhz_A 106 SGESSEITALIPVLKRLHVPLICITGRPESSMARAADVHLCVK 148 (183)
T ss_dssp SSCCHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHSSEEEECC
T ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCChhHHhCCEEEEeC
Confidence 3333455667788999999999999988888888899887643
No 93
>2nvv_A Acetyl-COA hydrolase/transferase family protein; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Porphyromonas gingivalis}
Probab=54.05 E-value=39 Score=37.43 Aligned_cols=96 Identities=17% Similarity=0.221 Sum_probs=57.3
Q ss_pred HHHHHhccCCCEEEEeCCh------HHHHHHHHHHHH---cCC--eeEEEEe-CCCC-----------------CchHHH
Q 006256 446 KHAVTKIRDGDVLLTYGSS------SAVEMILQHAHE---LGK--QFRVVIV-DSRP-----------------KHEGKL 496 (653)
Q Consensus 446 ~~a~~~I~dGdvILT~g~S------s~Ve~vL~~A~e---~gk--~f~ViV~-ESRP-----------------~~EG~~ 496 (653)
+.|+.+|+||++|...|+. .++..+.+.+.+ .|. +++++.. -..| ++.|..
T Consensus 9 eEAv~~IkdGdtV~~gGf~~~G~P~~Li~AL~~r~~~~~~~g~~~~Ltl~~~~s~g~~~~~~l~~~g~v~~~~~~~~~~~ 88 (506)
T 2nvv_A 9 EEAAEFVHHNDNVGFSGFTPAGNPKVVPAAIAKRAIAAHEKGNPFKIGMFTGASTGARLDGVLAQADAVKFRTPYQSNKD 88 (506)
T ss_dssp HHHHTTCCTTCEEEECCSSSTTCCCSHHHHHHHHHHHHHTTTCCCCEEEECSSCCCTTTHHHHHHTTCEEEEESCCCCHH
T ss_pred HHHHhhCCCCCEEEECCCCCCCCHHHHHHHHHHhHHhhccccCCceEEEEEecCCCcchhHHhccCCceEEEeeeCCCHH
Confidence 4566789999999999874 355555555443 332 4555542 1122 222333
Q ss_pred HHHHHHhCC-CCEEEEccchHHHHhh-----hccEEEEcceeEecCCCeecc
Q 006256 497 LLRRLVRKG-LSCTYTHINAISYIIH-----EVTRVFLGASSVLSNGTVCSR 542 (653)
Q Consensus 497 La~eL~~~G-I~vT~I~DsAv~~iM~-----~Vd~VllGAdaIlaNG~V~NK 542 (653)
.+++.+.| +.++-+..+.+..++. ++|..|+-|...-.+|.+.-.
T Consensus 89 -~r~~i~~G~i~~~P~~ls~v~~~l~~~~l~~~DVAlI~as~aDe~Gnls~~ 139 (506)
T 2nvv_A 89 -LRNLINNGSTSYFDLHLSTLAQDLRYGFYGKVDVAIIEVADVTEDGKILPT 139 (506)
T ss_dssp -HHHHHHTTSSEECCCCGGGHHHHHHTTSSCCCCEEEEEESEECTTSEEECC
T ss_pred -HHHHHHcCCCeEeCCCcccHHHHHHcCCcCCCCEEEEEecccCCCceEEEe
Confidence 33444445 3333334455554543 489999999999999987654
No 94
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=53.77 E-value=74 Score=29.69 Aligned_cols=37 Identities=24% Similarity=0.039 Sum_probs=30.2
Q ss_pred hHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEc
Q 006256 493 EGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLG 529 (653)
Q Consensus 493 EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllG 529 (653)
+=.++++.+.+.|+++..|+++.-+.+-+.+|.+|.-
T Consensus 107 ~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~ 143 (201)
T 3fxa_A 107 ELLNLIPACKTKGSTLIGVTENPDSVIAKEADIFFPV 143 (201)
T ss_dssp HHHTTHHHHHHHTCEEEEEESCTTSHHHHHCSEEEEC
T ss_pred HHHHHHHHHHHcCCeEEEEECCCCChhHHhCCEEEEc
Confidence 4445568888999999999998888888889998863
No 95
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=53.74 E-value=1.8e+02 Score=29.07 Aligned_cols=101 Identities=14% Similarity=0.206 Sum_probs=53.5
Q ss_pred CCEEEEeCChHHHHHHHHHHH----HcCCeeEEEEeCCCCCchHHHH-HHHHHhCCCCEEEEccc-----hHHHHhhhc-
Q 006256 455 GDVLLTYGSSSAVEMILQHAH----ELGKQFRVVIVDSRPKHEGKLL-LRRLVRKGLSCTYTHIN-----AISYIIHEV- 523 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~----e~gk~f~ViV~ESRP~~EG~~L-a~eL~~~GI~vT~I~Ds-----Av~~iM~~V- 523 (653)
..+++|-|.+.++..+++.+. +.|.. +|++.+ +.+-+... ...+...|+.+.++... -+..+-..+
T Consensus 81 ~~v~~~~g~t~al~~~~~~l~~~~~~~gd~-~Vl~~~--~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~ 157 (400)
T 3vax_A 81 DELIFTSGATESNNIALLGLAPYGERTGRR-HIITSA--IEHKAVLEPLEHLAGRGFEVDFLTPGPSGRISVEGVMERLR 157 (400)
T ss_dssp GGEEEESCHHHHHHHHHHTTHHHHHHHTCC-EEEEET--TSCHHHHHHHHHHHTTTCEEEEECCCTTCCCCHHHHHTTCC
T ss_pred CcEEEeCCHHHHHHHHHHHHHHhhccCCCC-EEEECc--cccHhHHHHHHHHHhcCCeEEEEccCCCCCcCHHHHHHhcC
Confidence 357777776777766666543 33431 566643 33333322 24455679998888632 122222211
Q ss_pred --cEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 524 --TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 524 --d~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
.++|+=..---..|.+.. --.|+-+|+.|++.+++
T Consensus 158 ~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~ 194 (400)
T 3vax_A 158 PDTLLVSLMHVNNETGVIQP---VAELAQQLRATPTYLHV 194 (400)
T ss_dssp TTEEEEECCSBCTTTCBBCC---HHHHHHHHTTSSCEEEE
T ss_pred CCceEEEEECCCCCceeeCc---HHHHHHHHHhcCCEEEE
Confidence 233322222222344433 25677789999987775
No 96
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=53.71 E-value=26 Score=31.34 Aligned_cols=61 Identities=16% Similarity=0.152 Sum_probs=35.6
Q ss_pred HHHhCCCCEEE---Ecc-ch---HHHHhh--hccEEEEcceeEecCCCeec-ccchHHHHHHHhhCCCCeeeecc
Q 006256 500 RLVRKGLSCTY---THI-NA---ISYIIH--EVTRVFLGASSVLSNGTVCS-RVGTACVAMVAYGFHIPVLVCCE 564 (653)
Q Consensus 500 eL~~~GI~vT~---I~D-sA---v~~iM~--~Vd~VllGAdaIlaNG~V~N-KiGT~~lAl~Ak~~~VPVyV~ae 564 (653)
.|...|++++. +.. .. +..+.. ++|+|++|++.- +.+-. -.|+..-- +.++.++||+|+-+
T Consensus 86 ~~~~~g~~~~~~~~~~~g~~~~~I~~~a~~~~~DlIV~G~~g~---~~~~~~~~Gsv~~~-vl~~~~~PVlvv~~ 156 (170)
T 2dum_A 86 EVKRAFRAKNVRTIIRFGIPWDEIVKVAEEENVSLIILPSRGK---LSLSHEFLGSTVMR-VLRKTKKPVLIIKE 156 (170)
T ss_dssp HHHHHTTCSEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCC---CC--TTCCCHHHHH-HHHHCSSCEEEECC
T ss_pred HHHHcCCceeeeeEEecCChHHHHHHHHHHcCCCEEEECCCCC---CccccceechHHHH-HHHhCCCCEEEEcc
Confidence 44556888765 322 22 222333 799999999853 22322 25654444 45557899999854
No 97
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2
Probab=53.70 E-value=37 Score=33.21 Aligned_cols=99 Identities=10% Similarity=0.091 Sum_probs=56.6
Q ss_pred CCEEEEeCChHHHH-HHHHHHHHcCCeeEEEEeCCCCC----chHHHHHHHHHhCCCCEEEEc--c-chHHHHhhhccEE
Q 006256 455 GDVLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPK----HEGKLLLRRLVRKGLSCTYTH--I-NAISYIIHEVTRV 526 (653)
Q Consensus 455 GdvILT~g~Ss~Ve-~vL~~A~e~gk~f~ViV~ESRP~----~EG~~La~eL~~~GI~vT~I~--D-sAv~~iM~~Vd~V 526 (653)
+.+||..|-+..+. .+++.+.++| ++|+++.-.+. .+-...+..|...|+.+.... | .++..+++.+|.|
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~v 81 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLG--HPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVV 81 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTT--CCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCC--CCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEE
Confidence 34678887643332 2234444556 46666543332 122333456667777554332 2 3455666666666
Q ss_pred EEcceeEecCCCeecccchHHHHHHHhhCC-CCeeee
Q 006256 527 FLGASSVLSNGTVCSRVGTACVAMVAYGFH-IPVLVC 562 (653)
Q Consensus 527 llGAdaIlaNG~V~NKiGT~~lAl~Ak~~~-VPVyV~ 562 (653)
|.-| +..+-.|+..++-+|+..+ ++-+|.
T Consensus 82 i~~a-------~~~~~~~~~~l~~aa~~~g~v~~~v~ 111 (308)
T 1qyc_A 82 ISTV-------GSLQIESQVNIIKAIKEVGTVKRFFP 111 (308)
T ss_dssp EECC-------CGGGSGGGHHHHHHHHHHCCCSEEEC
T ss_pred EECC-------cchhhhhHHHHHHHHHhcCCCceEee
Confidence 5433 3344568888888899888 888774
No 98
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=53.66 E-value=1.2e+02 Score=30.47 Aligned_cols=98 Identities=18% Similarity=0.100 Sum_probs=55.9
Q ss_pred EEEEeCCh-HHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc--------hHHHHhh--hccE
Q 006256 457 VLLTYGSS-SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN--------AISYIIH--EVTR 525 (653)
Q Consensus 457 vILT~g~S-s~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds--------Av~~iM~--~Vd~ 525 (653)
++++.+.+ .++..++..+.+ ..-+|++.+ |.+-|..+...+...|+.+..+... .+-..+. ++..
T Consensus 64 ~~~~~~s~t~al~~~~~~l~~--~gd~Vl~~~--~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~ 139 (416)
T 3isl_A 64 AYPIDGTSRAGIEAVLASVIE--PEDDVLIPI--YGRFGYLLTEIAERYGANVHMLECEWGTVFDPEDIIREIKKVKPKI 139 (416)
T ss_dssp EEEEESCHHHHHHHHHHHHCC--TTCEEEEEE--SSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSE
T ss_pred EEEecCcHHHHHHHHHHHhcC--CCCEEEEec--CCcccHHHHHHHHhcCCeeEEEecCCCCCCCHHHHHHHHhhCCCcE
Confidence 34344444 566666655543 334666655 4555544556677789988887532 3334443 3444
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHhhCCCCeeee
Q 006256 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (653)
Q Consensus 526 VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~ 562 (653)
|++- +--...|.+.. --.++-+|++|++.+++=
T Consensus 140 v~~~-~~~nptG~~~~---l~~i~~l~~~~~~~li~D 172 (416)
T 3isl_A 140 VAMV-HGETSTGRIHP---LKAIGEACRTEDALFIVD 172 (416)
T ss_dssp EEEE-SEETTTTEECC---CHHHHHHHHHTTCEEEEE
T ss_pred EEEE-ccCCCCceecC---HHHHHHHHHHcCCEEEEE
Confidence 4333 33333454444 356888899999988763
No 99
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=53.41 E-value=18 Score=32.17 Aligned_cols=78 Identities=15% Similarity=0.194 Sum_probs=50.2
Q ss_pred CCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc---hHHHHhh-hccEEEEcceeEecCCCeecccchHHHHHHHh
Q 006256 478 GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAY 553 (653)
Q Consensus 478 gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds---Av~~iM~-~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak 553 (653)
.++.+|.|+|..|... ..+...|.+.|..|+.+..+ |+..+-. ..|.||+ |--+.+.+ | +.++-.-+
T Consensus 6 ~r~~rILiVdD~~~~~-~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~~~~Dlvll--Di~mP~~~-----G-~el~~~lr 76 (123)
T 2lpm_A 6 ERRLRVLVVEDESMIA-MLIEDTLCELGHEVAATASRMQEALDIARKGQFDIAII--DVNLDGEP-----S-YPVADILA 76 (123)
T ss_dssp CCCCCEEEESSSTTTS-HHHHHHHHHHCCCCCBCSCCHHHHHHHHHHCCSSEEEE--CSSSSSCC-----S-HHHHHHHH
T ss_pred CCCCEEEEEeCCHHHH-HHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCCCEEEE--ecCCCCCC-----H-HHHHHHHH
Confidence 4678899999988762 23446788889988654433 2333222 5788888 44555432 3 34555556
Q ss_pred hCCCCeeeecc
Q 006256 554 GFHIPVLVCCE 564 (653)
Q Consensus 554 ~~~VPVyV~ae 564 (653)
..++||++++.
T Consensus 77 ~~~ipvI~lTa 87 (123)
T 2lpm_A 77 ERNVPFIFATG 87 (123)
T ss_dssp HTCCSSCCBCT
T ss_pred cCCCCEEEEec
Confidence 78999988765
No 100
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=53.37 E-value=1.4e+02 Score=28.15 Aligned_cols=36 Identities=6% Similarity=-0.143 Sum_probs=28.4
Q ss_pred hHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEE
Q 006256 493 EGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFL 528 (653)
Q Consensus 493 EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~Vll 528 (653)
+=.++++.+.+.|+++..|+++.-+.+.+.+|.+|.
T Consensus 146 ~~i~~~~~ak~~G~~vIaIT~~~~s~La~~aD~~l~ 181 (212)
T 2i2w_A 146 NVIKAIAAAREKGMKVITLTGKDGGKMAGTADIEIR 181 (212)
T ss_dssp HHHHHHHHHHHHTCEEEEEEETTCGGGTTCSSEEEE
T ss_pred HHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEE
Confidence 445667888889999999998876666677888876
No 101
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=53.28 E-value=83 Score=32.10 Aligned_cols=102 Identities=12% Similarity=0.058 Sum_probs=53.2
Q ss_pred CCCEEE--EeCChHHHHHHH--HHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc----------chHHHH
Q 006256 454 DGDVLL--TYGSSSAVEMIL--QHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI----------NAISYI 519 (653)
Q Consensus 454 dGdvIL--T~g~Ss~Ve~vL--~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D----------sAv~~i 519 (653)
...+++ |.|.+.+++.++ ..+...|. +|++.+ |.+.+.. ..+...|+++..+.. ..+-..
T Consensus 96 ~~~i~~~~t~g~~~a~~~~~~~~~~~~~gd--~Vl~~~--p~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~ 169 (412)
T 1yaa_A 96 EDRVISVQSLSGTGALHISAKFFSKFFPDK--LVYLSK--PTWANHM--AIFENQGLKTATYPYWANETKSLDLNGFLNA 169 (412)
T ss_dssp TTCEEEEEEEHHHHHHHHHHHHHHHHCTTC--CEEEEE--SCCTTHH--HHHHTTTCCEEEEECEETTTTEECHHHHHHH
T ss_pred cceEEEEeccchHhHHHHHHHHHHHhCCCC--EEEEeC--CCCccHH--HHHHHcCceEEEEeeecCCCCccCHHHHHHH
Confidence 346777 877777775552 23333332 455553 5555543 334456888777643 123333
Q ss_pred hhh---ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 520 IHE---VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 520 M~~---Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
+.+ .+++++=...-...|.+++.-=-..++-+|+.|++.+++
T Consensus 170 l~~~~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~ 214 (412)
T 1yaa_A 170 IQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALF 214 (412)
T ss_dssp HHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 333 244544233323334444332233567788899987665
No 102
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=53.20 E-value=11 Score=38.76 Aligned_cols=105 Identities=19% Similarity=0.174 Sum_probs=69.5
Q ss_pred CCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcceeEe
Q 006256 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVL 534 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAdaIl 534 (653)
-|+++.+-....+..++.+|.+.|.+.-|++.+.-|..+-.++.+.+.+.|| .++-.|+++.+-+...+..+-...+.
T Consensus 72 ~DvaIi~vp~~~~~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi--~viGPNc~Gii~~~~~~~~~~~~~~~ 149 (297)
T 2yv2_A 72 INTSIVFVPAPFAPDAVYEAVDAGIRLVVVITEGIPVHDTMRFVNYARQKGA--TIIGPNCPGAITPGQAKVGIMPGHIF 149 (297)
T ss_dssp CCEEEECCCGGGHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTC--EEECSSSCEEEETTTEEEESCCGGGC
T ss_pred CCEEEEecCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCC--EEEcCCCCeeEcccccceeecccCCC
Confidence 4777777777777788999999887766666666665555666677777777 46666666655544333322222233
Q ss_pred cCC--CeecccchHHHHHH--HhhCCCCeee
Q 006256 535 SNG--TVCSRVGTACVAMV--AYGFHIPVLV 561 (653)
Q Consensus 535 aNG--~V~NKiGT~~lAl~--Ak~~~VPVyV 561 (653)
.-| +++++.|++..+++ +...++.|--
T Consensus 150 ~~G~va~vSqSG~l~~~~~~~~~~~g~G~s~ 180 (297)
T 2yv2_A 150 KEGGVAVVSRSGTLTYEISYMLTRQGIGQST 180 (297)
T ss_dssp CEEEEEEEESCHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCCCeeE
Confidence 334 57899999988775 4557777753
No 103
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=53.18 E-value=50 Score=29.84 Aligned_cols=99 Identities=13% Similarity=0.099 Sum_probs=58.5
Q ss_pred cCCCEEEEeCChH----HH---HHHHHHHH--HcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEE-E---ccchHHHH
Q 006256 453 RDGDVLLTYGSSS----AV---EMILQHAH--ELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTY-T---HINAISYI 519 (653)
Q Consensus 453 ~dGdvILT~g~Ss----~V---e~vL~~A~--e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~-I---~DsAv~~i 519 (653)
.+..+|+..|+-. -+ ..++.... +++..++++++-..+...-..+-..+.+.| .+++ + ....+..+
T Consensus 34 ~~~~~i~~~G~~~~~~K~~~~li~a~~~l~~~~~~~~~~l~i~G~~~~~~~~~l~~~~~~~~-~v~~~~g~~~~~~~~~~ 112 (200)
T 2bfw_A 34 DEGVTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVREL 112 (200)
T ss_dssp CSCEEEEEESCBCSSSSCHHHHHHHHHHHTTSGGGGGEEEEEECCBCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHH
T ss_pred CCCCEEEEeeccccccCCHHHHHHHHHHHHhhccCCCeEEEEECCCChHHHHHHHHHHHhcC-CEEEEeccCCHHHHHHH
Confidence 3455777777532 22 23344443 444578888886654112233444555666 7777 2 33478889
Q ss_pred hhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeee
Q 006256 520 IHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (653)
Q Consensus 520 M~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~ 562 (653)
|..+|.+|+-... .| .| ...+=|-.+|+||++.
T Consensus 113 ~~~ad~~l~ps~~---e~-----~~--~~~~Ea~a~G~PvI~~ 145 (200)
T 2bfw_A 113 YGSVDFVIIPSYF---EP-----FG--LVALEAMCLGAIPIAS 145 (200)
T ss_dssp HTTCSEEEECCSC---CS-----SC--HHHHHHHHTTCEEEEE
T ss_pred HHHCCEEEECCCC---CC-----cc--HHHHHHHHCCCCEEEe
Confidence 9999999885422 22 23 3345667789998774
No 104
>1xr4_A Putative citrate lyase alpha chain/citrate-ACP TR; the midwest center for structural genomics, MCSG, structural genomics; 2.37A {Salmonella typhimurium} SCOP: c.124.1.2 c.124.1.2
Probab=52.68 E-value=30 Score=38.44 Aligned_cols=147 Identities=22% Similarity=0.232 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHhc------cCCCEEEEeCCh---HHHHHHHHHH-HHcCCeeEE---EEeCCCCCchHHHHHHHHHhCCC
Q 006256 440 ADRVIVKHAVTKI------RDGDVLLTYGSS---SAVEMILQHA-HELGKQFRV---VIVDSRPKHEGKLLLRRLVRKGL 506 (653)
Q Consensus 440 a~~~Ia~~a~~~I------~dGdvILT~g~S---s~Ve~vL~~A-~e~gk~f~V---iV~ESRP~~EG~~La~eL~~~GI 506 (653)
..+.|+++++++| +|| -.|=+|-+ .+|...|..- .+.+-.-.+ -+.+ . ...|.+.|+
T Consensus 249 ~~~~IA~~~a~~i~~~g~~~dG-~~lqlGIG~ip~aV~~~l~~~~~~l~i~se~g~~g~~d--------~-~~~l~e~G~ 318 (509)
T 1xr4_A 249 RELLIARQAANVIEHSGYFCDG-FSLQTGTGGASLAVTRFLEDKMRRHNITASFGLGGITG--------T-MVDLHEKGL 318 (509)
T ss_dssp HHHHHHHHHHHHHHTTSCCSTT-EEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEEEECH--------H-HHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhcCcCCCC-CEEEeccChHHHHHHHHhhhhcccceeecccccCCcCC--------c-cHhHHhCCC
Confidence 3467999999999 999 45555554 5677777664 333433333 1111 1 245666664
Q ss_pred -----CEEEEccchH-----------------------HHHhhhccEEEEcceeEecCCCeeccc--c---------hHH
Q 006256 507 -----SCTYTHINAI-----------------------SYIIHEVTRVFLGASSVLSNGTVCSRV--G---------TAC 547 (653)
Q Consensus 507 -----~vT~I~DsAv-----------------------~~iM~~Vd~VllGAdaIlaNG~V~NKi--G---------T~~ 547 (653)
+++-....+. ++...+.|..|+||=-|-.+|.+.+-. | ...
T Consensus 319 i~~~~~~~~f~~g~~~~~~~n~~~~~~~~~~~~n~~~~~~~~~~ldiai~galevD~~G~vn~~~~~~g~~~~G~GG~~D 398 (509)
T 1xr4_A 319 IKALLDTQSFDGDAARSLAQNPHHIEISTNQYANPASKGAACERLNVVMLSALEIDVNFNVNVMTGSNGVLRGASGGHSD 398 (509)
T ss_dssp BSCEEEEEECSHHHHHHHHHCTTEEECCHHHHTCTTCSCCGGGGCSEEEECCSEECTTCCEECSBCTTSCBCSBCTTHHH
T ss_pred ccCCcceeEeeccHHHHHHhCCcceEEeccccccCcchhhhhcCCCeEEeeeEEEccCCceeeeeccCCeEecccccHHH
Confidence 1211111111 023346799999999999888887766 2 233
Q ss_pred HHHHHhhCCCCeeeeccccccccccccCcccccccCCcccccccCCCcccccCCCccCCCCcccccccccccCCCCccEE
Q 006256 548 VAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGDPDSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDYVSLI 627 (653)
Q Consensus 548 lAl~Ak~~~VPVyV~aetyKf~~~~~~ds~~~nElrdp~ev~~~~g~~~~~~l~~~~~~~~l~v~Np~FDvTPpeLIt~I 627 (653)
++.-|+. +++|+++.. +. .+ .|. +.+ ..=.||-+.|+.|
T Consensus 399 ~~~gA~~----sii~~~~t~-------~~-------~s-kIV-----------------~~~-----~~v~t~~~~V~~i 437 (509)
T 1xr4_A 399 TAAGADL----TIITAPLVR-------GR-------IP-CVV-----------------EKV-----LTTVTPGASVDVL 437 (509)
T ss_dssp HHHHSSE----EEEECCSEE-------TT-------EE-SBC-----------------SSC-----SSCSBCGGGCCEE
T ss_pred HhhccCe----EEEEEcccC-------CC-------CC-eEe-----------------eCC-----CCcccCcCeeCEE
Confidence 4555552 466666432 10 00 011 001 1113688999999
Q ss_pred EeCCCCCC-CC
Q 006256 628 ITDYGMIP-PT 637 (653)
Q Consensus 628 ITE~Gvi~-Ps 637 (653)
|||+|+.. +.
T Consensus 438 VTE~Gva~~l~ 448 (509)
T 1xr4_A 438 VTDHGIAVNPA 448 (509)
T ss_dssp EETTEEEECTT
T ss_pred ECCcEEEEcCC
Confidence 99999988 54
No 105
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=52.61 E-value=83 Score=31.40 Aligned_cols=109 Identities=11% Similarity=0.040 Sum_probs=61.8
Q ss_pred CCCEEEEeCChHHHHHHH-HHHHHcCCeeEEEEeCCCCCchHHHHHHHHHh-------CCCCEEEEc--c-chHHHHhhh
Q 006256 454 DGDVLLTYGSSSAVEMIL-QHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-------KGLSCTYTH--I-NAISYIIHE 522 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL-~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~-------~GI~vT~I~--D-sAv~~iM~~ 522 (653)
.+.+||..|-+..|..-| +.+.++| .+|+++.-++...-. ....|.. .++.+.... | ..+..++..
T Consensus 24 ~~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 100 (351)
T 3ruf_A 24 SPKTWLITGVAGFIGSNLLEKLLKLN--QVVIGLDNFSTGHQY-NLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKG 100 (351)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEECCSSCCHH-HHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTT
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCCCCchh-hhhhhhhccccccCCceEEEEccCCCHHHHHHHhcC
Confidence 467899888766554433 4445555 577777655443222 2233333 444443322 1 235556667
Q ss_pred ccEEEEcceeEecCC--------CeecccchHHHHHHHhhCCCCeeeeccc
Q 006256 523 VTRVFLGASSVLSNG--------TVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (653)
Q Consensus 523 Vd~VllGAdaIlaNG--------~V~NKiGT~~lAl~Ak~~~VPVyV~aet 565 (653)
+|.||--|-....+. --.|-.||..+.-+|+.+++.-+|.+.+
T Consensus 101 ~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS 151 (351)
T 3ruf_A 101 VDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAAS 151 (351)
T ss_dssp CSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred CCEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEec
Confidence 777765543211000 1357889999999999999876665544
No 106
>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3
Probab=52.51 E-value=1.5e+02 Score=30.09 Aligned_cols=63 Identities=17% Similarity=0.006 Sum_probs=40.9
Q ss_pred EeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEE---cceeEecCCCeecccchHHHH
Q 006256 485 IVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFL---GASSVLSNGTVCSRVGTACVA 549 (653)
Q Consensus 485 V~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~Vll---GAdaIlaNG~V~NKiGT~~lA 549 (653)
+.-|.--.+=..+++.+.+.|+++..|+++.-+.+-+.+|.+|. |.+.+ .|....+.||.++.
T Consensus 147 IS~SG~T~~vi~al~~Ak~~Ga~~IaIT~~~~S~La~~AD~~I~~~~g~E~~--~~st~~~s~ta~~~ 212 (306)
T 1nri_A 147 IAASGRTPYVIAGLQYAKSLGALTISIASNPKSEMAEIADIAIETIVGPEIL--TGSSRLKSGTAQKM 212 (306)
T ss_dssp ECTTSCCHHHHHHHHHHHHHTCEEEEEESSTTCHHHHHSSEEEECCCCSCSS--TTCTTTHHHHHHHH
T ss_pred EECCCCCHHHHHHHHHHHHCCCEEEEEECCCCChHHHhCCEEEEcCCCCccc--cCcccchhHHHHHH
Confidence 33333333455667888889999999999887777778998875 33322 23344566665443
No 107
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*
Probab=52.37 E-value=36 Score=33.71 Aligned_cols=96 Identities=10% Similarity=0.097 Sum_probs=55.5
Q ss_pred EEEEeCChHHHH-HHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc--c-chHHHHhhhccEEEEccee
Q 006256 457 VLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH--I-NAISYIIHEVTRVFLGASS 532 (653)
Q Consensus 457 vILT~g~Ss~Ve-~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~--D-sAv~~iM~~Vd~VllGAda 532 (653)
+||..|-+..+. .+++.+.++| ++|+++.-.+. +-......|...|+.+.... | .++..+++.+|.||.-|
T Consensus 13 ~ilVtGatG~iG~~l~~~L~~~g--~~V~~l~R~~~-~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a-- 87 (318)
T 2r6j_A 13 KILIFGGTGYIGNHMVKGSLKLG--HPTYVFTRPNS-SKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISAL-- 87 (318)
T ss_dssp CEEEETTTSTTHHHHHHHHHHTT--CCEEEEECTTC-SCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECC--
T ss_pred eEEEECCCchHHHHHHHHHHHCC--CcEEEEECCCC-chhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEECC--
Confidence 678777643332 2334444556 45665543332 22333456677787664432 2 34556666666665533
Q ss_pred EecCCCeecccchHHHHHHHhhCC-CCeeee
Q 006256 533 VLSNGTVCSRVGTACVAMVAYGFH-IPVLVC 562 (653)
Q Consensus 533 IlaNG~V~NKiGT~~lAl~Ak~~~-VPVyV~ 562 (653)
+..+-.++..+.-+|+..+ +..+|.
T Consensus 88 -----~~~~~~~~~~l~~aa~~~g~v~~~v~ 113 (318)
T 2r6j_A 88 -----AFPQILDQFKILEAIKVAGNIKRFLP 113 (318)
T ss_dssp -----CGGGSTTHHHHHHHHHHHCCCCEEEC
T ss_pred -----chhhhHHHHHHHHHHHhcCCCCEEEe
Confidence 3334567888888888888 888774
No 108
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=52.26 E-value=11 Score=38.45 Aligned_cols=106 Identities=14% Similarity=0.155 Sum_probs=69.4
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcceeE
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSV 533 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAdaI 533 (653)
+-|.++.+-....+..++.+|.+.|.+.-|++.+.-+..+-.+|.+...+.|+. ++-.|+++.+-+..-+...-...+
T Consensus 64 ~~D~viI~tP~~~~~~~~~ea~~~Gi~~iVi~t~G~~~~~~~~l~~~A~~~gv~--liGPNc~Gi~~p~~~~~~~~~~~~ 141 (288)
T 2nu8_A 64 GATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVR--MIGPNTPGVITPGECKIGIQPGHI 141 (288)
T ss_dssp CCCEEEECCCGGGHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTCE--EECSSCCEEEETTTEEEESSCTTS
T ss_pred CCCEEEEecCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE--EEecCCcceecCCcceeEecccCC
Confidence 347777777777777889999998887767777877776667777777788873 565666555544322221111122
Q ss_pred ecCC--CeecccchHHHHHH--HhhCCCCeee
Q 006256 534 LSNG--TVCSRVGTACVAMV--AYGFHIPVLV 561 (653)
Q Consensus 534 laNG--~V~NKiGT~~lAl~--Ak~~~VPVyV 561 (653)
..-| +++++.||+..+++ +...++.|--
T Consensus 142 ~~~G~i~~vsqSG~l~~~~~~~~~~~g~G~s~ 173 (288)
T 2nu8_A 142 HKPGKVGIVSRSGTLTYEAVKQTTDYGFGQST 173 (288)
T ss_dssp CCEEEEEEEESCHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCCCEEEEECcHHHHHHHHHHHHhcCCCEEE
Confidence 3334 46888999776665 5667777753
No 109
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=52.04 E-value=71 Score=30.67 Aligned_cols=83 Identities=23% Similarity=0.199 Sum_probs=45.5
Q ss_pred HHHHcCCeeEEEEeCCCCCc---hHHHHHHHHHhCCCCEEEE--ccchHHHHhh---hccEEEEcceeEecCCCeecccc
Q 006256 473 HAHELGKQFRVVIVDSRPKH---EGKLLLRRLVRKGLSCTYT--HINAISYIIH---EVTRVFLGASSVLSNGTVCSRVG 544 (653)
Q Consensus 473 ~A~e~gk~f~ViV~ESRP~~---EG~~La~eL~~~GI~vT~I--~DsAv~~iM~---~Vd~VllGAdaIlaNG~V~NKiG 544 (653)
.|...+-.++|+-+...+.. .-.++...|.+.|+++++. ..+..-.++. +.|++++|+ .+ .+- -.|
T Consensus 177 la~~~~a~l~ll~v~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~g~~~~~i~~~a~~~dliV~G~-~~--~~~---~~G 250 (268)
T 3ab8_A 177 LARALGLGVRVVSVHEDPARAEAWALEAEAYLRDHGVEASALVLGGDAADHLLRLQGPGDLLALGA-PV--RRL---VFG 250 (268)
T ss_dssp HHHHHTCCEEEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSCHHHHHHHHCCTTEEEEEEC-CC--SCC---SSC
T ss_pred hhhcCCCEEEEEEEcCcHHHHHHHHHHHHHHHHHcCCceEEEEeCCChHHHHHHHHHhCCEEEECC-cc--ccc---Eec
Confidence 33344656676654432211 1123456778889988764 2333333333 449999999 11 111 246
Q ss_pred hHHHHHHHhhCCCCeeee
Q 006256 545 TACVAMVAYGFHIPVLVC 562 (653)
Q Consensus 545 T~~lAl~Ak~~~VPVyV~ 562 (653)
+..-.+ .++..+||+|+
T Consensus 251 s~~~~v-l~~~~~pvlvv 267 (268)
T 3ab8_A 251 STAERV-IRNAQGPVLTA 267 (268)
T ss_dssp CHHHHH-HHHCSSCEEEE
T ss_pred cHHHHH-HhcCCCCEEEe
Confidence 554444 45668999986
No 110
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=51.73 E-value=62 Score=32.77 Aligned_cols=101 Identities=11% Similarity=0.056 Sum_probs=54.8
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc-----------chHHHHhh-
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-----------NAISYIIH- 521 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D-----------sAv~~iM~- 521 (653)
...+++|.|.+.++..+++.+.+.| -+|++ ..|.+.|...+ +...|+.+..+.. ..+-..+.
T Consensus 89 ~~~v~~t~g~~~a~~~~~~~l~~~g--d~vl~--~~p~~~~~~~~--~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~ 162 (399)
T 1c7n_A 89 TDWIINTAGVVPAVFNAVREFTKPG--DGVII--ITPVYYPFFMA--IKNQERKIIECELLEKDGYYTIDFQKLEKLSKD 162 (399)
T ss_dssp GGGEEEESSHHHHHHHHHHHHCCTT--CEEEE--CSSCCTHHHHH--HHTTTCEEEECCCEEETTEEECCHHHHHHHHTC
T ss_pred hhhEEEcCCHHHHHHHHHHHhcCCC--CEEEE--cCCCcHhHHHH--HHHcCCEEEecccccCCCCEEEcHHHHHHHhcc
Confidence 3457778777778876666553333 35555 34667665433 3456776665532 12233332
Q ss_pred -hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 522 -~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
++.+|++ ..--...|.++..-=-..++-+|++|++.+++
T Consensus 163 ~~~~~v~~-~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~ 202 (399)
T 1c7n_A 163 KNNKALLF-CSPHNPVGRVWKKDELQKIKDIVLKSDLMLWS 202 (399)
T ss_dssp TTEEEEEE-ESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEE
T ss_pred CCCcEEEE-cCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEE
Confidence 3445544 22222234444332234566788999997765
No 111
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=51.72 E-value=76 Score=31.65 Aligned_cols=97 Identities=15% Similarity=0.057 Sum_probs=57.3
Q ss_pred EEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc--------chHHHHhh--hccEE
Q 006256 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIH--EVTRV 526 (653)
Q Consensus 457 vILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D--------sAv~~iM~--~Vd~V 526 (653)
+++|.|.+.++..+++.+.+.| -+|++.+ +.+-|..+...+...|+.+..+.. ..+-..+. ++..|
T Consensus 77 v~~~~gg~~al~~~~~~~~~~g--d~vl~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v 152 (393)
T 3kgw_A 77 LVVSGSGHCAMETALFNLLEPG--DSFLTGT--NGIWGMRAAEIADRIGARVHQMIKKPGEHYTLQEVEEGLAQHKPVLL 152 (393)
T ss_dssp EEESCCTTTHHHHHHHHHCCTT--CEEEEEE--SSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEE
T ss_pred EEEeCCcHHHHHHHHHhcCCCC--CEEEEEe--CCchhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhCCCcEE
Confidence 6777777888877777664333 3566653 444444555666778988877752 23333443 35555
Q ss_pred EEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 527 FLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 527 llGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
++- .-=-..|.+.. --.|+-+|+.|++.+++
T Consensus 153 ~~~-~~~nptG~~~~---l~~i~~l~~~~~~~li~ 183 (393)
T 3kgw_A 153 FLV-HGESSTGVVQP---LDGFGELCHRYQCLLLV 183 (393)
T ss_dssp EEE-SEETTTTEECC---CTTHHHHHHHTTCEEEE
T ss_pred EEe-ccCCcchhhcc---HHHHHHHHHHcCCEEEE
Confidence 443 22233454444 23577789999987776
No 112
>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*
Probab=51.45 E-value=45 Score=34.04 Aligned_cols=111 Identities=9% Similarity=0.101 Sum_probs=62.8
Q ss_pred CCCEEEEeCChHHHHHHH-HHHHHc-CCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc----chHHHHhhhccEEE
Q 006256 454 DGDVLLTYGSSSAVEMIL-QHAHEL-GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI----NAISYIIHEVTRVF 527 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL-~~A~e~-gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D----sAv~~iM~~Vd~Vl 527 (653)
.|.+||..|-+..+..-| +.+.++ |. .+|+++...+ .....+..+|...++.+. +.| ..+..++..+|.||
T Consensus 20 ~~k~vlVTGatG~iG~~l~~~L~~~~g~-~~V~~~~r~~-~~~~~~~~~~~~~~v~~~-~~Dl~d~~~l~~~~~~~D~Vi 96 (344)
T 2gn4_A 20 DNQTILITGGTGSFGKCFVRKVLDTTNA-KKIIVYSRDE-LKQSEMAMEFNDPRMRFF-IGDVRDLERLNYALEGVDICI 96 (344)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHCCC-SEEEEEESCH-HHHHHHHHHHCCTTEEEE-ECCTTCHHHHHHHTTTCSEEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhhCCC-CEEEEEECCh-hhHHHHHHHhcCCCEEEE-ECCCCCHHHHHHHHhcCCEEE
Confidence 467888888765554333 344454 43 2666665432 222334445543444332 233 35666777788777
Q ss_pred EcceeEec--------CCCeecccchHHHHHHHhhCCCCeeeeccccc
Q 006256 528 LGASSVLS--------NGTVCSRVGTACVAMVAYGFHIPVLVCCEAYK 567 (653)
Q Consensus 528 lGAdaIla--------NG~V~NKiGT~~lAl~Ak~~~VPVyV~aetyK 567 (653)
--|-.... .---.|-.||..++-+|..+++.-+|...+.+
T Consensus 97 h~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~~~V~~SS~~ 144 (344)
T 2gn4_A 97 HAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIALSTDK 144 (344)
T ss_dssp ECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCGG
T ss_pred ECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCCc
Confidence 65521110 00013668999999999999998777766643
No 113
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}
Probab=51.40 E-value=25 Score=35.20 Aligned_cols=110 Identities=10% Similarity=0.102 Sum_probs=63.5
Q ss_pred CCCEEEEeCChHHHHH-HHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHH-hCCCCEEEE-cc----chHHHHhhh--cc
Q 006256 454 DGDVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLV-RKGLSCTYT-HI----NAISYIIHE--VT 524 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~-vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~-~~GI~vT~I-~D----sAv~~iM~~--Vd 524 (653)
.+.+||..|-+..|.. +++.+.++|..++|++.+..+..........+. ..+ ++++ .| ..+..++.. +|
T Consensus 23 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~Dl~d~~~~~~~~~~~~~d 100 (346)
T 4egb_A 23 NAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLNNVKSIQDHPN--YYFVKGEIQNGELLEHVIKERDVQ 100 (346)
T ss_dssp -CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCCGGGGTTTTTCTT--EEEEECCTTCHHHHHHHHHHHTCC
T ss_pred CCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccchhhhhhhccCCC--eEEEEcCCCCHHHHHHHHhhcCCC
Confidence 4567888888665543 344556678788999887554322111111111 123 3443 22 345666766 88
Q ss_pred EEEEcceeEecCCC--------eecccchHHHHHHHhhCCCCeeeeccc
Q 006256 525 RVFLGASSVLSNGT--------VCSRVGTACVAMVAYGFHIPVLVCCEA 565 (653)
Q Consensus 525 ~VllGAdaIlaNG~--------V~NKiGT~~lAl~Ak~~~VPVyV~aet 565 (653)
.||--|-....+.. -.|-.||..+.-+|+.++++-+|.+.+
T Consensus 101 ~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS 149 (346)
T 4egb_A 101 VIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIKLVQVST 149 (346)
T ss_dssp EEEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTSEEEEEEE
T ss_pred EEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 88866543321111 357789999999999999985554443
No 114
>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*
Probab=51.37 E-value=66 Score=34.99 Aligned_cols=112 Identities=16% Similarity=0.241 Sum_probs=70.5
Q ss_pred ccCCCEEEEeCChHHHHHHH-HHHHHcCCeeEEEEeCCCCC-c-hHHHHHHHHHhCCCCEEEE-cc----chHHHHhhhc
Q 006256 452 IRDGDVLLTYGSSSAVEMIL-QHAHELGKQFRVVIVDSRPK-H-EGKLLLRRLVRKGLSCTYT-HI----NAISYIIHEV 523 (653)
Q Consensus 452 I~dGdvILT~g~Ss~Ve~vL-~~A~e~gk~f~ViV~ESRP~-~-EG~~La~eL~~~GI~vT~I-~D----sAv~~iM~~V 523 (653)
+..+.+||..|-+.-+...| +.+.++|.. +|+++.-++. . .-.++..+|...|..++++ +| .++..++.++
T Consensus 223 ~~~~~~vLITGgtGgIG~~la~~La~~G~~-~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~i 301 (486)
T 2fr1_A 223 WKPTGTVLVTGGTGGVGGQIARWLARRGAP-HLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGI 301 (486)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHHTCS-EEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTS
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHcCCC-EEEEEcCCCCCcHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHHHH
Confidence 44567888888776554433 444455543 4555433322 2 2356678898899888876 34 3566667665
Q ss_pred ------cEEEEcceeEecCCCe-------------ecccchHHHHHHHhhCCCCeeeeccc
Q 006256 524 ------TRVFLGASSVLSNGTV-------------CSRVGTACVAMVAYGFHIPVLVCCEA 565 (653)
Q Consensus 524 ------d~VllGAdaIlaNG~V-------------~NKiGT~~lAl~Ak~~~VPVyV~aet 565 (653)
|.||-.|- +..+|.+ .|-.|+..+.-+++.++..++|++.+
T Consensus 302 ~~~g~ld~VIh~AG-~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~V~~SS 361 (486)
T 2fr1_A 302 GDDVPLSAVFHAAA-TLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLTAFVLFSS 361 (486)
T ss_dssp CTTSCEEEEEECCC-CCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCSEEEEEEE
T ss_pred HhcCCCcEEEECCc-cCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcC
Confidence 77766553 3334432 25678888888888888888887765
No 115
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=51.36 E-value=61 Score=29.56 Aligned_cols=94 Identities=15% Similarity=0.157 Sum_probs=60.4
Q ss_pred cCCCEEEEeCChH--HHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc----------chHHHHh
Q 006256 453 RDGDVLLTYGSSS--AVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI----------NAISYII 520 (653)
Q Consensus 453 ~dGdvILT~g~Ss--~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D----------sAv~~iM 520 (653)
..| ++++.+... -+..+.+..+ ...|++|.+++ .++.|.+.||+|+.|.. ..+.-++
T Consensus 24 ~~g-vliSv~d~dK~~l~~~a~~l~--~lGf~i~AT~G--------Ta~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i 92 (143)
T 2yvq_A 24 QKG-ILIGIQQSFRPRFLGVAEQLH--NEGFKLFATEA--------TSDWLNANNVPATPVAWPSQEGQNPSLSSIRKLI 92 (143)
T ss_dssp CSE-EEEECCGGGHHHHHHHHHHHH--TTTCEEEEEHH--------HHHHHHHTTCCCEEECCGGGC-----CBCHHHHH
T ss_pred CCC-EEEEecccchHHHHHHHHHHH--HCCCEEEECch--------HHHHHHHcCCeEEEEEeccCCCcccccccHHHHH
Confidence 357 777766532 2334445444 35788887643 35678899999999963 3355555
Q ss_pred h--hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeee
Q 006256 521 H--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (653)
Q Consensus 521 ~--~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~ 562 (653)
+ ++|+||-=.+ |.--...-.|.+=-+|=.|+||++--
T Consensus 93 ~~g~i~lVInt~~-----~~~~~~~d~~~iRR~Av~~~IP~~T~ 131 (143)
T 2yvq_A 93 RDGSIDLVINLPN-----NNTKFVHDNYVIRRTAVDSGIPLLTN 131 (143)
T ss_dssp HTTSCCEEEECCC-----CCGGGHHHHHHHHHHHHHTTCCEECS
T ss_pred HCCCceEEEECCC-----CCCcCCccHHHHHHHHHHhCCCeEcC
Confidence 5 7999986442 21111345677778899999998753
No 116
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=51.12 E-value=33 Score=36.86 Aligned_cols=92 Identities=18% Similarity=0.234 Sum_probs=53.9
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhh-ccEEEEccee
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHE-VTRVFLGASS 532 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~-Vd~VllGAda 532 (653)
.|..|+.+|-+.+=..+-+.++++| ++|.+.|.++..+. .++..|.+.||++.+-.+.. .++.. +|.||++.-
T Consensus 8 ~~k~v~viG~G~sG~s~A~~l~~~G--~~V~~~D~~~~~~~-~~~~~L~~~gi~~~~g~~~~--~~~~~~~d~vv~spg- 81 (451)
T 3lk7_A 8 ENKKVLVLGLARSGEAAARLLAKLG--AIVTVNDGKPFDEN-PTAQSLLEEGIKVVCGSHPL--ELLDEDFCYMIKNPG- 81 (451)
T ss_dssp TTCEEEEECCTTTHHHHHHHHHHTT--CEEEEEESSCGGGC-HHHHHHHHTTCEEEESCCCG--GGGGSCEEEEEECTT-
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCC--CEEEEEeCCcccCC-hHHHHHHhCCCEEEECCChH--HhhcCCCCEEEECCc-
Confidence 3678888887543223334444444 78899999875432 34578999999887644422 23445 788876532
Q ss_pred EecCCCeecccchHHHHHHHhhCCCCee
Q 006256 533 VLSNGTVCSRVGTACVAMVAYGFHIPVL 560 (653)
Q Consensus 533 IlaNG~V~NKiGT~~lAl~Ak~~~VPVy 560 (653)
|-. +...-..|++.|+||+
T Consensus 82 i~~---------~~p~~~~a~~~gi~v~ 100 (451)
T 3lk7_A 82 IPY---------NNPMVKKALEKQIPVL 100 (451)
T ss_dssp SCT---------TSHHHHHHHHTTCCEE
T ss_pred CCC---------CChhHHHHHHCCCcEE
Confidence 111 1233445666666655
No 117
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=50.90 E-value=70 Score=32.08 Aligned_cols=97 Identities=16% Similarity=0.167 Sum_probs=56.2
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc-c-chHHHHhh-hccEEEEcc
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-I-NAISYIIH-EVTRVFLGA 530 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~-D-sAv~~iM~-~Vd~VllGA 530 (653)
...+++|.|.+.++..+++.+.+.| -+|++.+ |.+.|.... +...|+.+..+. | ..+-..+. ++..|++ .
T Consensus 89 ~~~v~~~~g~~~a~~~~~~~~~~~g--d~vl~~~--p~~~~~~~~--~~~~g~~~~~v~~d~~~l~~~l~~~~~~v~~-~ 161 (370)
T 2z61_A 89 PDNIIITGGSSLGLFFALSSIIDDG--DEVLIQN--PCYPCYKNF--IRFLGAKPVFCDFTVESLEEALSDKTKAIII-N 161 (370)
T ss_dssp GGGEEEESSHHHHHHHHHHHHCCTT--CEEEEES--SCCTHHHHH--HHHTTCEEEEECSSHHHHHHHCCSSEEEEEE-E
T ss_pred hhhEEECCChHHHHHHHHHHhcCCC--CEEEEeC--CCchhHHHH--HHHcCCEEEEeCCCHHHHHHhcccCceEEEE-c
Confidence 3467888887788877666654333 3565543 556564433 455788888875 2 22222332 3444544 2
Q ss_pred eeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 531 SSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 531 daIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
.---..|.++..- ++-+|++|++.+++
T Consensus 162 ~p~nptG~~~~~~----l~~~~~~~~~~li~ 188 (370)
T 2z61_A 162 SPSNPLGEVIDRE----IYEFAYENIPYIIS 188 (370)
T ss_dssp SSCTTTCCCCCHH----HHHHHHHHCSEEEE
T ss_pred CCCCCcCcccCHH----HHHHHHHcCCEEEE
Confidence 2212346666554 77788999987665
No 118
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=50.84 E-value=1.1e+02 Score=30.34 Aligned_cols=96 Identities=20% Similarity=0.163 Sum_probs=54.9
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc--cc--------hHHHHhh----
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH--IN--------AISYIIH---- 521 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~--Ds--------Av~~iM~---- 521 (653)
.+++|.|.+.++..++..+.+.| -+|++. .|.+.|...+ +...|+.+..+. .. .+-..+.
T Consensus 71 ~v~~~~g~t~a~~~~~~~~~~~g--d~vl~~--~~~~~~~~~~--~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~ 144 (371)
T 2e7j_A 71 VARVTNGAREAKFAVMHSLAKKD--AWVVMD--ENCHYSSYVA--AERAGLNIALVPKTDYPDYAITPENFAQTIEETKK 144 (371)
T ss_dssp EEEEESSHHHHHHHHHHHHCCTT--CEEEEE--TTCCHHHHHH--HHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTT
T ss_pred EEEEeCChHHHHHHHHHHHhCCC--CEEEEc--cCcchHHHHH--HHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcc
Confidence 56666666677766666654333 355554 4556555544 566798888886 22 2333343
Q ss_pred --hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 522 --EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 522 --~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
++ ++|+=..--...|.++.- -.++-+|++|++.+++
T Consensus 145 ~~~~-~~v~~~~~~nptG~~~~~---~~i~~~~~~~~~~li~ 182 (371)
T 2e7j_A 145 RGEV-VLALITYPDGNYGNLPDV---KKIAKVCSEYDVPLLV 182 (371)
T ss_dssp TSCE-EEEEEESSCTTTCCCCCH---HHHHHHHHTTTCCEEE
T ss_pred cCCe-EEEEEECCCCCCcccCCH---HHHHHHHHHcCCeEEE
Confidence 22 233222222334555542 6777889999998876
No 119
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=50.76 E-value=86 Score=33.62 Aligned_cols=98 Identities=14% Similarity=0.092 Sum_probs=54.5
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHH-HH-HHHhCCCCEEEEccc---hHHHHhhh-c-cEEEE
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-LR-RLVRKGLSCTYTHIN---AISYIIHE-V-TRVFL 528 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~L-a~-eL~~~GI~vT~I~Ds---Av~~iM~~-V-d~Vll 528 (653)
+.|++-+.+.++..+|+...+.| -+|++.+ |.+.|..- .. .+...|+.++++... .+...+.. . .+|++
T Consensus 131 ~~v~~~sG~~Ai~~al~~l~~~G--d~Vi~~~--~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~ai~~~tv~lV~l 206 (445)
T 1qgn_A 131 STLLMASGMCASTVMLLALVPAG--GHIVTTT--DCYRKTRIFIETILPKMGITATVIDPADVGALELALNQKKVNLFFT 206 (445)
T ss_dssp EEEEESCHHHHHHHHHHHHSCSS--CEEEEET--TSCHHHHHHHHHTGGGGTCEEEEECSSCHHHHHHHHHHSCEEEEEE
T ss_pred cEEEeCCHHHHHHHHHHHHhCCC--CEEEEcC--CCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHhccCCCCEEEE
Confidence 34554444456655555444334 3666655 66766432 23 366789999998632 34444443 3 44544
Q ss_pred cceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 529 GASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 529 GAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
..---..|.+.. --.|+-+|++|+++|+|
T Consensus 207 -e~p~NptG~v~d---l~~I~~la~~~g~~liv 235 (445)
T 1qgn_A 207 -ESPTNPFLRCVD---IELVSKLCHEKGALVCI 235 (445)
T ss_dssp -ESSCTTTCCCCC---HHHHHHHHHHTTCEEEE
T ss_pred -eCCCCCCCcccC---HHHHHHHHHHcCCEEEE
Confidence 211112244332 34678889999998776
No 120
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=50.76 E-value=1.1e+02 Score=31.31 Aligned_cols=111 Identities=22% Similarity=0.284 Sum_probs=59.6
Q ss_pred HHhccC-CCEEEEe--CChHHHH--HHHHHHHH---cCCeeEEEEe-CCC---CCc-hHHHHHHHHHhCCCCEE-EEccc
Q 006256 449 VTKIRD-GDVLLTY--GSSSAVE--MILQHAHE---LGKQFRVVIV-DSR---PKH-EGKLLLRRLVRKGLSCT-YTHIN 514 (653)
Q Consensus 449 ~~~I~d-GdvILT~--g~Ss~Ve--~vL~~A~e---~gk~f~ViV~-ESR---P~~-EG~~La~eL~~~GI~vT-~I~Ds 514 (653)
.++|.. +-++|-- |+-++=+ .+-+-|.| ...-+++.|. |.+ |.. +-.+.+++|.+.|+.+- |+.|+
T Consensus 66 ~~~i~~~~~~~lpNTag~~ta~eAv~~a~lare~~~~~~~iKlEv~~d~~~llpD~~~tv~aa~~L~~~Gf~Vlpy~~dd 145 (265)
T 1wv2_A 66 LDVIPPDRYTILPNTAGCYDAVEAVRTCRLARELLDGHNLVKLEVLADQKTLFPNVVETLKAAEQLVKDGFDVMVYTSDD 145 (265)
T ss_dssp ----CTTTSEEEEECTTCCSHHHHHHHHHHHHTTTTSCCEEEECCBSCTTTCCBCHHHHHHHHHHHHTTTCEEEEEECSC
T ss_pred HhhhhhcCCEECCcCCCCCCHHHHHHHHHHHHHHcCCCCeEEEEeecCccccCcCHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 345554 6677744 3333322 23334445 2344777776 444 222 34455799999999998 77765
Q ss_pred -hHHHHhhhccEEEEcceeEecCCCee--c--ccchHHHHHHHhhCCCCeeeecc
Q 006256 515 -AISYIIHEVTRVFLGASSVLSNGTVC--S--RVGTACVAMVAYGFHIPVLVCCE 564 (653)
Q Consensus 515 -Av~~iM~~Vd~VllGAdaIlaNG~V~--N--KiGT~~lAl~Ak~~~VPVyV~ae 564 (653)
..+.-+.++ |++.|+.-|..+ + -.--..|-.+.+..++||++-+.
T Consensus 146 ~~~akrl~~~-----G~~aVmPlg~pIGsG~Gi~~~~lI~~I~e~~~vPVI~eGG 195 (265)
T 1wv2_A 146 PIIARQLAEI-----GCIAVMPLAGLIGSGLGICNPYNLRIILEEAKVPVLVDAG 195 (265)
T ss_dssp HHHHHHHHHS-----CCSEEEECSSSTTCCCCCSCHHHHHHHHHHCSSCBEEESC
T ss_pred HHHHHHHHHh-----CCCEEEeCCccCCCCCCcCCHHHHHHHHhcCCCCEEEeCC
Confidence 445555432 444444433210 0 01134667777788999998654
No 121
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=50.63 E-value=1.1e+02 Score=31.03 Aligned_cols=101 Identities=15% Similarity=0.222 Sum_probs=52.0
Q ss_pred CCEEEEeCChHHHHHHHHHHH-HcCCeeEEEEeCCCCCchHHHHH-HHHHh-CCCCEEEEccc---------hHHHHhh-
Q 006256 455 GDVLLTYGSSSAVEMILQHAH-ELGKQFRVVIVDSRPKHEGKLLL-RRLVR-KGLSCTYTHIN---------AISYIIH- 521 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~-e~gk~f~ViV~ESRP~~EG~~La-~eL~~-~GI~vT~I~Ds---------Av~~iM~- 521 (653)
..+++|-|.+.++..+++... ..++.-+|++.+ |.+.+.... ..|.+ .|+.+.++... .+-..+.
T Consensus 87 ~~v~~~~g~t~al~~~~~~l~~~~~~gd~vi~~~--~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~l~~ 164 (406)
T 3cai_A 87 GGVVLGADRAVLLSLLAEASSSRAGLGYEVIVSR--LDDEANIAPWLRAAHRYGAKVKWAEVDIETGELPTWQWESLISK 164 (406)
T ss_dssp GGEEEESCHHHHHHHHHHHTGGGGBTTCEEEEET--TSCGGGTHHHHHHHHHHBCEEEEECCCTTTCCCCGGGHHHHCCT
T ss_pred CeEEEeCChHHHHHHHHHHHhhccCCCCEEEEcC--CccHHHHHHHHHHHHhcCCeEEEEecCcccCCcCHHHHHHHhCC
Confidence 457777777777755444331 112223566643 555443222 33333 58888877532 2333332
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 522 ~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
++.+|++ ...-...|.+.. --.|+-+|+.|++.+++
T Consensus 165 ~~~~v~~-~~~~nptG~~~~---l~~i~~l~~~~~~~li~ 200 (406)
T 3cai_A 165 STRLVAV-NSASGTLGGVTD---LRAMTKLVHDVGALVVV 200 (406)
T ss_dssp TEEEEEE-ESBCTTTCBBCC---CHHHHHHHHHTTCEEEE
T ss_pred CceEEEE-eCCcCCccccCC---HHHHHHHHHHcCCEEEE
Confidence 3333333 222223355544 25677889999987765
No 122
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=50.45 E-value=24 Score=34.79 Aligned_cols=74 Identities=22% Similarity=0.271 Sum_probs=45.8
Q ss_pred EEEEeCChHHHHHHHHHHHHcCC-eeEEEEeC-CCCCchHHHHHHHHHhCCCCEEEEc-----cchHHHHhh--hccEEE
Q 006256 457 VLLTYGSSSAVEMILQHAHELGK-QFRVVIVD-SRPKHEGKLLLRRLVRKGLSCTYTH-----INAISYIIH--EVTRVF 527 (653)
Q Consensus 457 vILT~g~Ss~Ve~vL~~A~e~gk-~f~ViV~E-SRP~~EG~~La~eL~~~GI~vT~I~-----DsAv~~iM~--~Vd~Vl 527 (653)
.||.-|.++.++.+|... +.+. ..+|..+= .+|...|.+. ..+.|||+.++. +..+...++ ++|.++
T Consensus 12 ~vl~SG~gsnl~all~~~-~~~~~~~~I~~Vis~~~~a~~l~~---A~~~gIp~~~~~~~~~~~~~~~~~L~~~~~Dliv 87 (215)
T 3kcq_A 12 GVLISGRGSNLEALAKAF-STEESSVVISCVISNNAEARGLLI---AQSYGIPTFVVKRKPLDIEHISTVLREHDVDLVC 87 (215)
T ss_dssp EEEESSCCHHHHHHHHHT-CCC-CSEEEEEEEESCTTCTHHHH---HHHTTCCEEECCBTTBCHHHHHHHHHHTTCSEEE
T ss_pred EEEEECCcHHHHHHHHHH-HcCCCCcEEEEEEeCCcchHHHHH---HHHcCCCEEEeCcccCChHHHHHHHHHhCCCEEE
Confidence 578888999987766554 4443 35544333 4777777544 456799998864 234555555 588887
Q ss_pred Ecce-eEe
Q 006256 528 LGAS-SVL 534 (653)
Q Consensus 528 lGAd-aIl 534 (653)
+-+- .|+
T Consensus 88 lagy~~IL 95 (215)
T 3kcq_A 88 LAGFMSIL 95 (215)
T ss_dssp ESSCCSCC
T ss_pred EeCCceEe
Confidence 7443 444
No 123
>2ahu_A Putative enzyme YDIF; COA transferase, glutamyl thioester, structural genomi montreal-kingston bacterial structural genomics initiative; 1.90A {Escherichia coli} SCOP: c.124.1.3 c.124.1.2 PDB: 2ahv_A* 2ahw_A*
Probab=50.44 E-value=1.4e+02 Score=33.23 Aligned_cols=43 Identities=14% Similarity=0.003 Sum_probs=33.8
Q ss_pred hccEEEEcceeEecCCCeeccc--ch---HHHHHHHhhCCCCeeeecc
Q 006256 522 EVTRVFLGASSVLSNGTVCSRV--GT---ACVAMVAYGFHIPVLVCCE 564 (653)
Q Consensus 522 ~Vd~VllGAdaIlaNG~V~NKi--GT---~~lAl~Ak~~~VPVyV~ae 564 (653)
.+|..|+-|...-.+|.+.-.. +. ..+|++||..+--|+|-++
T Consensus 180 ~~DVAlI~a~~aD~~Gn~~~~~~~~~~~~~~~a~aAk~~gg~VIveVn 227 (531)
T 2ahu_A 180 APDIAFIRATTCDSEGYATFEDEVMYLDALVIAQAVHNNGGIVMMQVQ 227 (531)
T ss_dssp CCSEEEEECSEEETTCCEECTTSSCCTTHHHHHHHHHTTTCEEEEEES
T ss_pred CCeEEEEEcccCCCCceEEEcCcccccCHHHHHHhHhhcCCEEEEEEc
Confidence 5899999999999999977653 22 3678999987777777665
No 124
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=50.38 E-value=71 Score=32.98 Aligned_cols=102 Identities=14% Similarity=0.169 Sum_probs=53.5
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc-------chHHHHhh-----
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-------NAISYIIH----- 521 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D-------sAv~~iM~----- 521 (653)
...+++|.|.+.++..+++.+.+.| -+|++.+ |.+.|... .+...|+.+..+.. ..+-..+.
T Consensus 109 ~~~v~~t~G~~~al~~~~~~l~~~g--d~Vl~~~--p~y~~~~~--~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~ 182 (425)
T 1vp4_A 109 EDNLIFTVGSQQALDLIGKLFLDDE--SYCVLDD--PAYLGAIN--AFRQYLANFVVVPLEDDGMDLNVLERKLSEFDKN 182 (425)
T ss_dssp GGGEEEEEHHHHHHHHHHHHHCCTT--CEEEEEE--SCCHHHHH--HHHTTTCEEEEEEEETTEECHHHHHHHHHHHHHT
T ss_pred cccEEEeccHHHHHHHHHHHhCCCC--CEEEEeC--CCcHHHHH--HHHHcCCEEEEeccCCCCCCHHHHHHHHHhhhhc
Confidence 3467888888888866666553333 3555533 55656433 34457887776642 22333333
Q ss_pred ----hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 522 ----EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 522 ----~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
++..|++=..--...|.++..-=-..++-+|++|++.+++
T Consensus 183 ~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~ 226 (425)
T 1vp4_A 183 GKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVE 226 (425)
T ss_dssp TCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred ccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 2333332111111224443321123577788999987765
No 125
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=50.36 E-value=65 Score=32.28 Aligned_cols=98 Identities=15% Similarity=0.165 Sum_probs=53.5
Q ss_pred CCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccch------HHHHhh----hcc
Q 006256 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA------ISYIIH----EVT 524 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsA------v~~iM~----~Vd 524 (653)
..+++|.|.+.++..+++.+ .| -+|++. .|.+.|.... +...|.++..+.... +..++. ++.
T Consensus 77 ~~v~~~~g~~~al~~~~~~~--~g--d~vl~~--~p~y~~~~~~--~~~~g~~~~~v~~~~~~~~~~l~~~~~~~~~~~~ 148 (364)
T 1lc5_A 77 SWILAGNGETESIFTVASGL--KP--RRAMIV--TPGFAEYGRA--LAQSGCEIRRWSLREADGWQLTDAILEALTPDLD 148 (364)
T ss_dssp GGEEEESSHHHHHHHHHHHH--CC--SEEEEE--ESCCTHHHHH--HHHTTCEEEEEECCGGGTTCCCTTHHHHCCTTCC
T ss_pred HHEEECCCHHHHHHHHHHHc--CC--CeEEEe--CCCcHHHHHH--HHHcCCeEEEEeCCcccccchhHHHHHhccCCCC
Confidence 46788888788886666655 45 355554 3666664433 445688887775321 111222 344
Q ss_pred EEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 525 ~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
+|++ .+--...|.++..-=--.++-+|++|++.+++
T Consensus 149 ~v~i-~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 184 (364)
T 1lc5_A 149 CLFL-CTPNNPTGLLPERPLLQAIADRCKSLNINLIL 184 (364)
T ss_dssp EEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred EEEE-eCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEE
Confidence 4544 22212234444332124566788999988775
No 126
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=50.20 E-value=49 Score=33.47 Aligned_cols=103 Identities=17% Similarity=0.078 Sum_probs=58.3
Q ss_pred CC-CEEEEeCChHHHHHHHHHHHHcCC---eeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc---------hHHHHh
Q 006256 454 DG-DVLLTYGSSSAVEMILQHAHELGK---QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---------AISYII 520 (653)
Q Consensus 454 dG-dvILT~g~Ss~Ve~vL~~A~e~gk---~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds---------Av~~iM 520 (653)
.. .+++|.|.+.++..+++.+.+.|. +-+|++. .|.+.+... .+...|+.+..+... .+-..+
T Consensus 90 ~~~~i~~t~g~~~al~~~~~~~~~~g~~~~~d~vl~~--~p~~~~~~~--~~~~~g~~~~~v~~~~~g~~~d~~~l~~~~ 165 (396)
T 3jtx_A 90 ADNEILPVLGSREALFSFVQTVLNPVSDGIKPAIVSP--NPFYQIYEG--ATLLGGGEIHFANCPAPSFNPDWRSISEEV 165 (396)
T ss_dssp TTTSEEEESSHHHHHHHHHHHHCCC---CCCCEEEEE--ESCCHHHHH--HHHHTTCEEEEEECCTTTCCCCGGGSCHHH
T ss_pred CCCeEEEcCCcHHHHHHHHHHHhCCCCccCCCEEEEc--CCCcHhHHH--HHHHcCCEEEEeecCCCCCccCHHHHHHhh
Confidence 44 788888888888776666644332 1355553 466666544 345578888777521 222223
Q ss_pred -hhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 521 -HEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 521 -~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
+++.+|++- .---..|.++..---..++-+|++|++.+++
T Consensus 166 ~~~~~~v~l~-~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 206 (396)
T 3jtx_A 166 WKRTKLVFVC-SPNNPSGSVLDLDGWKEVFDLQDKYGFIIAS 206 (396)
T ss_dssp HHTEEEEEEE-SSCTTTCCCCCHHHHHHHHHHHHHHCCEEEE
T ss_pred ccCcEEEEEE-CCCCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 245555542 2222335554444444477788999987765
No 127
>3cdk_A Succinyl-COA:3-ketoacid-coenzyme A transferase subunit A; CO-expressed complex, hetero-tetramer, structural genomics, PSI-2; 2.59A {Bacillus subtilis}
Probab=50.00 E-value=73 Score=31.67 Aligned_cols=44 Identities=18% Similarity=0.105 Sum_probs=30.1
Q ss_pred hccEEEEcceeEecCCCeecc--cc--hHHHHHHHhhCCCCeeeeccccccccc
Q 006256 522 EVTRVFLGASSVLSNGTVCSR--VG--TACVAMVAYGFHIPVLVCCEAYKFHER 571 (653)
Q Consensus 522 ~Vd~VllGAdaIlaNG~V~NK--iG--T~~lAl~Ak~~~VPVyV~aetyKf~~~ 571 (653)
++|..|+-|...-.+|.+.-. .+ ...+|.+|| +|+++.-++.++
T Consensus 151 ~~DVAlI~a~~aD~~Gn~~~~~~~~~~~~~~a~aAk------~VIveVn~~vp~ 198 (241)
T 3cdk_A 151 TGDVAIVKAWKADTMGNLIFRKTARNFNPIAAMAGK------ITIAEAEEIVEA 198 (241)
T ss_dssp CEEEEEEEEEEEETTCCEECCGGGCTTHHHHHHHEE------EEEEEEEEEECT
T ss_pred CCcEEEEEeccCCCCCeEEEecCchhhHHHHHHhCC------EEEEEEeCCCCc
Confidence 589999999999999997665 22 344555666 566654444443
No 128
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=49.98 E-value=44 Score=34.29 Aligned_cols=100 Identities=12% Similarity=0.130 Sum_probs=54.1
Q ss_pred CCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccch-------HHHHhh----hc
Q 006256 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA-------ISYIIH----EV 523 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsA-------v~~iM~----~V 523 (653)
..+++|.|.+.++..+++.+.+.| -+|++.+ |.+.|.... +...|+.+..+.... +..+-. ++
T Consensus 100 ~~v~~t~g~~~a~~~~~~~~~~~g--d~Vl~~~--p~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~ 173 (412)
T 2x5d_A 100 SEAIVTIGSKEGLAHLMLATLDHG--DTILVPN--PSYPIHIYG--AVIAGAQVRSVPLVPGIDFFNELERAIRESIPKP 173 (412)
T ss_dssp TSEEEESCHHHHHHHHHHHHCCTT--CEEEEEE--SCCHHHHHH--HHHHTCEEEEEECSTTSCHHHHHHHHHHTEESCC
T ss_pred cCEEEcCChHHHHHHHHHHhCCCC--CEEEEcC--CCchhHHHH--HHHcCCEEEEeecCCccCCCCCHHHHHHhcccCc
Confidence 467888887778876666554333 3566543 666665443 334688877775321 122222 34
Q ss_pred cEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 524 d~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
..|++ .+---..|.++..---..++-+|+.|++.+++
T Consensus 174 ~~v~l-~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 210 (412)
T 2x5d_A 174 RMMIL-GFPSNPTAQCVELDFFERVVALAKQYDVMVVH 210 (412)
T ss_dssp SEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred eEEEE-CCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 45555 22211234433321124567788999987765
No 129
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=49.89 E-value=1.3e+02 Score=29.46 Aligned_cols=104 Identities=20% Similarity=0.343 Sum_probs=57.0
Q ss_pred EEEEeCChH----HHHHHHHHHHHcCCeeEEEEeCCCCC-ch-HHHHHHHHHhCCCCEEEE--ccchHHHHhh-----hc
Q 006256 457 VLLTYGSSS----AVEMILQHAHELGKQFRVVIVDSRPK-HE-GKLLLRRLVRKGLSCTYT--HINAISYIIH-----EV 523 (653)
Q Consensus 457 vILT~g~Ss----~Ve~vL~~A~e~gk~f~ViV~ESRP~-~E-G~~La~eL~~~GI~vT~I--~DsAv~~iM~-----~V 523 (653)
+++-+..|. ++...+.-|...+..++|+-+...+. .+ -.++...|.+.|+++++. ..+....++. ++
T Consensus 173 Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~g~~~~~I~~~a~~~~~ 252 (294)
T 3loq_A 173 VLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDGDKTADLRVMEEVIGAEGIEVHVHIESGTPHKAILAKREEINA 252 (294)
T ss_dssp EEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSCCHHHHHHHHHHHHHTTCCEEEEEECSCHHHHHHHHHHHTTC
T ss_pred EEEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCchHHHHHHHHHHHHHHcCCcEEEEEecCCHHHHHHHHHHhcCc
Confidence 344455553 34444444444566777665543332 11 234456788899986554 3333333333 68
Q ss_pred cEEEEcceeEecCCCeec-ccchHHHHHHHhhCCCCeeeecc
Q 006256 524 TRVFLGASSVLSNGTVCS-RVGTACVAMVAYGFHIPVLVCCE 564 (653)
Q Consensus 524 d~VllGAdaIlaNG~V~N-KiGT~~lAl~Ak~~~VPVyV~ae 564 (653)
|++++|+..- |.+-. -.|+..-. +.++..+||+|+=+
T Consensus 253 dLlV~G~~~~---~~~~~~~~Gs~~~~-vl~~~~~pvLvv~~ 290 (294)
T 3loq_A 253 TTIFMGSRGA---GSVMTMILGSTSES-VIRRSPVPVFVCKR 290 (294)
T ss_dssp SEEEEECCCC---SCHHHHHHHCHHHH-HHHHCSSCEEEECS
T ss_pred CEEEEeCCCC---CCccceeeCcHHHH-HHhcCCCCEEEECC
Confidence 9999999742 22222 13444333 44677899999754
No 130
>1uwk_A Urocanate hydratase; hydrolase, urocanase, imidazolonepropionate, histidine metabolism, lyase; HET: NAD URO; 1.19A {Pseudomonas putida} SCOP: e.51.1.1 PDB: 1w1u_A* 1uwl_A* 2v7g_A*
Probab=49.82 E-value=39 Score=37.62 Aligned_cols=114 Identities=15% Similarity=0.289 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccc-HHHHHHHHHHHHHh-c-------------------CCCccHHHHHHHHHHHHHHH
Q 006256 374 SRDLTAKISSYVSFLIDCRPLSVS-MGNAIRFLKSQIAK-I-------------------PISLSESEAKATLHSDIERF 432 (653)
Q Consensus 374 ~rdL~~~L~~~i~~L~~aRPtsVs-mgNAIr~lk~~I~~-~-------------------~~~~~~~eaK~~L~e~I~~f 432 (653)
..+|.+.|...-+...+-+|+|+. +||+..-+-+.+++ + +.+++.+|+.+...++-+.|
T Consensus 216 ~~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~~i~~DlvtDQTSaHdp~~GY~P~g~t~ee~~~l~~~dp~~~ 295 (557)
T 1uwk_A 216 ATDLDDALVRIAKYTAEGKAISIALHGNAAEILPELVKRGVRPDMVTDQTSAHDPLNGYLPAGWTWEQYRDRAQTEPAAV 295 (557)
T ss_dssp CSSHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHHTCCCSEECCCSCTTCTTTSCCCTTCCHHHHHHHHHHCHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHCCCCCCCCCCCccccCcccccCCCCCCHHHHHHHHHhCHHHH
Confidence 346667777777778888999987 49998766665544 1 11357899999998888888
Q ss_pred HHHHHHHHHHHHHHHHH---HhccCCCEEEEeCCh-----------------HHHHHHHHHHHHcCCe-eEEEEeCCCCC
Q 006256 433 INEKIILADRVIVKHAV---TKIRDGDVLLTYGSS-----------------SAVEMILQHAHELGKQ-FRVVIVDSRPK 491 (653)
Q Consensus 433 i~E~i~~a~~~Ia~~a~---~~I~dGdvILT~g~S-----------------s~Ve~vL~~A~e~gk~-f~ViV~ESRP~ 491 (653)
.+. +.+.+.+|.. ++-..|..+.=|||+ +-|..+|+-.+..|+. ||=+++-..|.
T Consensus 296 ~~~----~~~Sm~rhv~Am~~~~~~G~~~fDYGN~~r~~a~~aG~~~aF~~P~fV~~~irPlF~~G~GPFRWvalSGdpe 371 (557)
T 1uwk_A 296 VKA----AKQSMAVHVQAMLDFQKQGVPTFDYGNNIRQMAKEEGVADAFDFPGFVPAYIRPLFCRGVGPFRWAALSGEAE 371 (557)
T ss_dssp HHH----HHHHHHHHHHHHHHHHHTTCCBCBCSSCHHHHHHHTTCTTGGGSCBHHHHTTHHHHTTTCBCEEEEETTCCHH
T ss_pred HHH----HHHHHHHHHHHHHHHHHCCCeeeeccHHHHHHHHhCChhhcCCCCccHHHHhhhHhhcCCCCceeEEcCCCHH
Confidence 654 5666666643 344578888888875 2345566666666764 77777766664
No 131
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=49.67 E-value=57 Score=27.72 Aligned_cols=90 Identities=11% Similarity=0.117 Sum_probs=47.7
Q ss_pred CCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHh-CCCCEEEEccc-hHHHH----hhhccEEEE
Q 006256 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-KGLSCTYTHIN-AISYI----IHEVTRVFL 528 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~-~GI~vT~I~Ds-Av~~i----M~~Vd~Vll 528 (653)
+..|+.+|.+..=..+...+.+.| .+|+++|..+. .+..|.+ .|+.+.. .|. ....+ +.++|.||+
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g--~~v~~~d~~~~-----~~~~~~~~~~~~~~~-~d~~~~~~l~~~~~~~~d~vi~ 75 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKG--HDIVLIDIDKD-----ICKKASAEIDALVIN-GDCTKIKTLEDAGIEDADMYIA 75 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHH-----HHHHHHHHCSSEEEE-SCTTSHHHHHHTTTTTCSEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CeEEEEECCHH-----HHHHHHHhcCcEEEE-cCCCCHHHHHHcCcccCCEEEE
Confidence 356888898765444455555555 56777776442 2334443 3665432 222 11111 457888887
Q ss_pred cceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 529 GASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 529 GAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
-...- -. ...++.+|+.+++.-+|
T Consensus 76 ~~~~~-----~~----~~~~~~~~~~~~~~~ii 99 (140)
T 1lss_A 76 VTGKE-----EV----NLMSSLLAKSYGINKTI 99 (140)
T ss_dssp CCSCH-----HH----HHHHHHHHHHTTCCCEE
T ss_pred eeCCc-----hH----HHHHHHHHHHcCCCEEE
Confidence 75321 11 13456678888765433
No 132
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=49.62 E-value=35 Score=31.84 Aligned_cols=100 Identities=13% Similarity=0.036 Sum_probs=57.8
Q ss_pred CEEEEeCChHHHHHHHH-HHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc-c----chHHHHhhhccEEEEc
Q 006256 456 DVLLTYGSSSAVEMILQ-HAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-I----NAISYIIHEVTRVFLG 529 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~-~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~-D----sAv~~iM~~Vd~VllG 529 (653)
.+||..|-+..|...|. .+.++| .+|+++.-++... . .+ ..+ ++++. | ..+..++.++|.||--
T Consensus 5 ~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~-~----~~-~~~--~~~~~~Dl~d~~~~~~~~~~~d~vi~~ 74 (227)
T 3dhn_A 5 KKIVLIGASGFVGSALLNEALNRG--FEVTAVVRHPEKI-K----IE-NEH--LKVKKADVSSLDEVCEVCKGADAVISA 74 (227)
T ss_dssp CEEEEETCCHHHHHHHHHHHHTTT--CEEEEECSCGGGC-C----CC-CTT--EEEECCCTTCHHHHHHHHTTCSEEEEC
T ss_pred CEEEEEcCCchHHHHHHHHHHHCC--CEEEEEEcCcccc-h----hc-cCc--eEEEEecCCCHHHHHHHhcCCCEEEEe
Confidence 47888887766654443 444444 6788776554321 0 01 122 33332 2 3456667788888876
Q ss_pred ceeEecCCC--eecccchHHHHHHHhhCCCCeeeeccc
Q 006256 530 ASSVLSNGT--VCSRVGTACVAMVAYGFHIPVLVCCEA 565 (653)
Q Consensus 530 AdaIlaNG~--V~NKiGT~~lAl~Ak~~~VPVyV~aet 565 (653)
|-....+-. -.|-.|+..+.-+|+.+++.-+|...+
T Consensus 75 a~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss 112 (227)
T 3dhn_A 75 FNPGWNNPDIYDETIKVYLTIIDGVKKAGVNRFLMVGG 112 (227)
T ss_dssp CCC------CCSHHHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred CcCCCCChhHHHHHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 533222211 127789999999999999876666554
No 133
>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}
Probab=49.61 E-value=67 Score=33.05 Aligned_cols=87 Identities=16% Similarity=0.190 Sum_probs=56.2
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHh-CCCCEEEEccchHHHHhhhccEEEEcce-
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-KGLSCTYTHINAISYIIHEVTRVFLGAS- 531 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~-~GI~vT~I~DsAv~~iM~~Vd~VllGAd- 531 (653)
+..+|+.+|.+..-...++...+.....+|+|.+-. .-.+|+.+|.+ .|++++.. .+..++.++|.|+.-.-
T Consensus 120 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~---~a~~la~~l~~~~g~~~~~~---~~~eav~~aDIVi~aT~s 193 (313)
T 3hdj_A 120 RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY---ASPEILERIGRRCGVPARMA---APADIAAQADIVVTATRS 193 (313)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT---CCHHHHHHHHHHHTSCEEEC---CHHHHHHHCSEEEECCCC
T ss_pred CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc---HHHHHHHHHHHhcCCeEEEe---CHHHHHhhCCEEEEccCC
Confidence 567899999987655555554443334466666655 45567777764 48887665 34566789999986431
Q ss_pred -------eEecCCCeecccchH
Q 006256 532 -------SVLSNGTVCSRVGTA 546 (653)
Q Consensus 532 -------aIlaNG~V~NKiGT~ 546 (653)
..+..|..++-+|++
T Consensus 194 ~~pvl~~~~l~~G~~V~~vGs~ 215 (313)
T 3hdj_A 194 TTPLFAGQALRAGAFVGAIGSS 215 (313)
T ss_dssp SSCSSCGGGCCTTCEEEECCCS
T ss_pred CCcccCHHHcCCCcEEEECCCC
Confidence 124556777777765
No 134
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=49.49 E-value=55 Score=33.28 Aligned_cols=102 Identities=13% Similarity=0.182 Sum_probs=52.8
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc-------chHHHHhh-----
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-------NAISYIIH----- 521 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D-------sAv~~iM~----- 521 (653)
...+++|.|.+.++..+++.+.+.| -+|++.+ |.+.|.. ..+...|+.+..+.. ..+-..+.
T Consensus 98 ~~~v~~t~g~t~a~~~~~~~~~~~g--d~vl~~~--p~~~~~~--~~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~ 171 (407)
T 2zc0_A 98 PENIVITIGGTGALDLLGRVLIDPG--DVVITEN--PSYINTL--LAFEQLGAKIEGVPVDNDGMRVDLLEEKIKELKAK 171 (407)
T ss_dssp GGGEEEESHHHHHHHHHHHHHCCTT--CEEEEEE--SCCHHHH--HHHHTTTCEEEEEEEETTEECHHHHHHHHHHHHHT
T ss_pred cceEEEecCHHHHHHHHHHHhcCCC--CEEEEeC--CChHHHH--HHHHHcCCEEEEcccCCCCCCHHHHHHHHHhhhcc
Confidence 3467778777778876666654333 3555544 5565543 334557888777642 22333343
Q ss_pred --hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 522 --EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 522 --~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
++..|++=...-...|.++..-=--.++-+|+.|++.+++
T Consensus 172 ~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~ 213 (407)
T 2zc0_A 172 GQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIE 213 (407)
T ss_dssp TCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred cCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 2323322111111123322210012677788999988776
No 135
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=49.42 E-value=73 Score=32.21 Aligned_cols=101 Identities=15% Similarity=0.110 Sum_probs=54.4
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc-----------chHHHHhh-
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-----------NAISYIIH- 521 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D-----------sAv~~iM~- 521 (653)
...+++|.|.+.++..+++.+.+.| -+|++. .|.+.|...+ +...|..+..+.. ..+-..+.
T Consensus 87 ~~~v~~t~g~~~al~~~~~~l~~~g--d~vl~~--~p~y~~~~~~--~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~ 160 (390)
T 1d2f_A 87 SQTVVYGPSVIYMVSELIRQWSETG--EGVVIH--TPAYDAFYKA--IEGNQRTVMPVALEKQADGWFCDMGKLEAVLAK 160 (390)
T ss_dssp GGGEEEESCHHHHHHHHHHHSSCTT--CEEEEE--ESCCHHHHHH--HHHTTCEEEEEECEECSSSEECCHHHHHHHHTS
T ss_pred HHHEEEcCCHHHHHHHHHHHhcCCC--CEEEEc--CCCcHHHHHH--HHHCCCEEEEeecccCCCccccCHHHHHHHhcc
Confidence 3467888777778866666553333 355553 3666665433 3456877766642 12233332
Q ss_pred -hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 522 -~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
++.+|++- .--...|.++..-=-..++-+|++|++.+++
T Consensus 161 ~~~~~v~l~-~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 200 (390)
T 1d2f_A 161 PECKIMLLC-SPQNPTGKVWTCDELEIMADLCERHGVRVIS 200 (390)
T ss_dssp TTEEEEEEE-SSCTTTCCCCCTTHHHHHHHHHHHTTCEEEE
T ss_pred CCCeEEEEe-CCCCCCCcCcCHHHHHHHHHHHHHcCCEEEE
Confidence 34455442 2212234444332223566788999997775
No 136
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Probab=49.40 E-value=16 Score=37.77 Aligned_cols=105 Identities=15% Similarity=0.154 Sum_probs=71.6
Q ss_pred CCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhC-CCCEEEEccchHHHHhhhccEEEEcceeE
Q 006256 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRK-GLSCTYTHINAISYIIHEVTRVFLGASSV 533 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~-GI~vT~I~DsAv~~iM~~Vd~VllGAdaI 533 (653)
-|.++.+-....+..++.++.+.|.+.-|++.+.-+..+-.++.+.+.+. |+. +|-.|+++.+.+...+...-...+
T Consensus 72 vD~avI~vP~~~~~~~~~e~i~~Gi~~iv~~t~G~~~~~~~~l~~~a~~~~gi~--liGPnc~Gii~p~~~~~~~~~~~~ 149 (305)
T 2fp4_A 72 ATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTR--LIGPNCPGVINPGECKIGIMPGHI 149 (305)
T ss_dssp CCEEEECCCHHHHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHTTCSSCE--EECSSSCEEEETTTEEEESSCGGG
T ss_pred CCEEEEecCHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHhcCCcE--EEeCCCCeEecccccceeeccccC
Confidence 47777777777888899999998887667777777766555777777777 874 676777766655432222111222
Q ss_pred ecCC--CeecccchHHHHHH--HhhCCCCeee
Q 006256 534 LSNG--TVCSRVGTACVAMV--AYGFHIPVLV 561 (653)
Q Consensus 534 laNG--~V~NKiGT~~lAl~--Ak~~~VPVyV 561 (653)
..-| +++++.||+..+++ +...++.|--
T Consensus 150 ~~~G~va~vSqSG~l~~~~~~~~~~~g~G~S~ 181 (305)
T 2fp4_A 150 HKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSL 181 (305)
T ss_dssp CCEEEEEEEESCSHHHHHHHHHHHHTTCCEEE
T ss_pred CCCCCEEEEecchHHHHHHHHHHHhcCCCeeE
Confidence 3334 57899999988876 5667777753
No 137
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=49.05 E-value=1.3e+02 Score=32.08 Aligned_cols=68 Identities=19% Similarity=0.230 Sum_probs=47.0
Q ss_pred HHHHHHHhCCCCEEEE--cc---chHHHHhh---hccEEEEcceeEecCCCeecccchHHHHHHHhhC-CCCeeeecccc
Q 006256 496 LLLRRLVRKGLSCTYT--HI---NAISYIIH---EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGF-HIPVLVCCEAY 566 (653)
Q Consensus 496 ~La~eL~~~GI~vT~I--~D---sAv~~iM~---~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~-~VPVyV~aety 566 (653)
.+++.|.+.|+++.++ .| ..++.++. +++.+++|+-++ ||++.-.+-.+..-+.+..+ |+++.+ ..+|
T Consensus 285 ~ia~gl~~~Gv~~~~~~~~d~~~~~~s~i~~~i~~~~~ivlGspT~--~~~~~p~~~~~l~~l~~~~~~~K~~~~-FGSy 361 (410)
T 4dik_A 285 KAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDSEALIFGVSTY--EAEIHPLMRFTLLEIIDKANYEKPVLV-FGVH 361 (410)
T ss_dssp HHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHSTTCSEEEEEECCT--TSSSCHHHHHHHHHHHHHCCCCCEEEE-EEEC
T ss_pred HHHHHHHhcCCceEEEEeccCCCCCHHHHHHHHHhCCeEEEEeCCc--CCcCCHHHHHHHHHHHhcccCCCEEEE-EECC
Confidence 3346788899998754 33 23677766 789999999887 67788877766666666655 555544 4454
No 138
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=49.00 E-value=1.4e+02 Score=29.48 Aligned_cols=59 Identities=10% Similarity=0.156 Sum_probs=36.5
Q ss_pred CCCEEEEcc--c---hHHHHhhhccEEEEcceeEecCCCeec-ccchHHHHHHHhhCCCCeeeeccccc
Q 006256 505 GLSCTYTHI--N---AISYIIHEVTRVFLGASSVLSNGTVCS-RVGTACVAMVAYGFHIPVLVCCEAYK 567 (653)
Q Consensus 505 GI~vT~I~D--s---Av~~iM~~Vd~VllGAdaIlaNG~V~N-KiGT~~lAl~Ak~~~VPVyV~aetyK 567 (653)
|++++.... . .+..+..++|+||+|.+.- |.+-. -.|+..-. +.++.++||+|+-+.++
T Consensus 100 ~~~~~~~~~~g~~~~~I~~~a~~~DliV~G~~g~---~~~~~~~~Gs~~~~-vl~~~~~PVlvv~~~~~ 164 (309)
T 3cis_A 100 PPTVHSEIVPAAAVPTLVDMSKDAVLMVVGCLGS---GRWPGRLLGSVSSG-LLRHAHCPVVIIHDEDS 164 (309)
T ss_dssp CSCEEEEEESSCHHHHHHHHGGGEEEEEEESSCT---TCCTTCCSCHHHHH-HHHHCSSCEEEECTTCC
T ss_pred CceEEEEEecCCHHHHHHHHhcCCCEEEECCCCC---ccccccccCcHHHH-HHHhCCCCEEEEcCCcc
Confidence 888876432 2 2223334799999998752 22222 25665544 45566999999977654
No 139
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=48.97 E-value=65 Score=28.34 Aligned_cols=92 Identities=11% Similarity=0.124 Sum_probs=53.4
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHh-----hhccEEEEcc
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYII-----HEVTRVFLGA 530 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM-----~~Vd~VllGA 530 (653)
+.|+..|++..=..+.+.+.+.| +.|+++|..|. .+.+|.+.|+++.+ -|..-..++ .++|.||+..
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~g--~~v~vid~~~~-----~~~~~~~~g~~~i~-gd~~~~~~l~~a~i~~ad~vi~~~ 79 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLASD--IPLVVIETSRT-----RVDELRERGVRAVL-GNAANEEIMQLAHLECAKWLILTI 79 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTT--CCEEEEESCHH-----HHHHHHHTTCEEEE-SCTTSHHHHHHTTGGGCSEEEECC
T ss_pred CCEEEECcCHHHHHHHHHHHHCC--CCEEEEECCHH-----HHHHHHHcCCCEEE-CCCCCHHHHHhcCcccCCEEEEEC
Confidence 57888999876555566666555 46777777653 35567778987643 343322222 3667776543
Q ss_pred eeEecCCCeecccchHHHHHHHhhC--CCCeeeecc
Q 006256 531 SSVLSNGTVCSRVGTACVAMVAYGF--HIPVLVCCE 564 (653)
Q Consensus 531 daIlaNG~V~NKiGT~~lAl~Ak~~--~VPVyV~ae 564 (653)
.. ..-+..+++.|+.. ++.+++-+.
T Consensus 80 ~~---------~~~n~~~~~~a~~~~~~~~iiar~~ 106 (140)
T 3fwz_A 80 PN---------GYEAGEIVASARAKNPDIEIIARAH 106 (140)
T ss_dssp SC---------HHHHHHHHHHHHHHCSSSEEEEEES
T ss_pred CC---------hHHHHHHHHHHHHHCCCCeEEEEEC
Confidence 22 12234466667765 455554443
No 140
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=48.96 E-value=1.2e+02 Score=30.25 Aligned_cols=99 Identities=9% Similarity=0.030 Sum_probs=55.6
Q ss_pred CCEEEEeCChHHHHHHHHHHH---HcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc---------chHHHHhh-
Q 006256 455 GDVLLTYGSSSAVEMILQHAH---ELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---------NAISYIIH- 521 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~---e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D---------sAv~~iM~- 521 (653)
..+++|.|.+.++..+++.+. +.| -+|++.++ |.+.+ .+...+...|+.+..+.. ..+-..+.
T Consensus 60 ~~v~~~~g~t~al~~~~~~~~~~~~~g--d~vlv~~~-~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~ 135 (385)
T 2bkw_A 60 QPFVLAGSGTLGWDIFASNFILSKAPN--KNVLVVST-GTFSD-RFADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQ 135 (385)
T ss_dssp EEEEEESCTTHHHHHHHHHHSCTTCSC--CEEEEECS-SHHHH-HHHHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHH
T ss_pred ceEEEcCchHHHHHHHHHHHhccCCCC--CeEEEEcC-CcchH-HHHHHHHHcCCceEEEecCCCCCCCCHHHHHHHHhc
Confidence 357778787888876666553 333 36766654 33322 223445667988887753 12333343
Q ss_pred -hccEEEEcceeEecCCCeecccchHHHHHHHhhC--CCCeee
Q 006256 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGF--HIPVLV 561 (653)
Q Consensus 522 -~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~--~VPVyV 561 (653)
++..|++ .+--...|.+.. -..++-+|++| ++.+++
T Consensus 136 ~~~~~v~~-~~~~nptG~~~~---l~~i~~~~~~~~~~~~li~ 174 (385)
T 2bkw_A 136 NSYGAVTV-THVDTSTAVLSD---LKAISQAIKQTSPETFFVV 174 (385)
T ss_dssp SCCSEEEE-ESEETTTTEECC---HHHHHHHHHHHCTTSEEEE
T ss_pred CCCCEEEE-EccCCCcCeEcC---HHHHHHHHHhhCCCCEEEE
Confidence 3455544 222223355443 34677788998 887665
No 141
>2fkn_A Urocanate hydratase; rossman fold, lyase; HET: NAD; 2.20A {Bacillus subtilis}
Probab=48.86 E-value=39 Score=37.62 Aligned_cols=114 Identities=20% Similarity=0.318 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccc-HHHHHHHHHHHHHhc--------------------CCCccHHHHHHHHHHHHHHH
Q 006256 374 SRDLTAKISSYVSFLIDCRPLSVS-MGNAIRFLKSQIAKI--------------------PISLSESEAKATLHSDIERF 432 (653)
Q Consensus 374 ~rdL~~~L~~~i~~L~~aRPtsVs-mgNAIr~lk~~I~~~--------------------~~~~~~~eaK~~L~e~I~~f 432 (653)
..+|.+.|...-+...+-+|+|+. +||+..-+-+.+++. +.+++.+|+.+...++-+.|
T Consensus 212 ~~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~~i~~DlvtDQTSaHdp~~GY~P~g~t~ee~~~l~~~dp~~~ 291 (552)
T 2fkn_A 212 TASIEEALAWAEEAKLAGKPLSIALLGNAAEVHHTLLNRGVKIDIVTDQTSAHDPLIGYVPEGYSLDEADRLRQDTPELY 291 (552)
T ss_dssp ESCHHHHHHHHHHHHHTTCCEEEEEESCHHHHHHHHHTTTCCCSEECCCSCTTCTTTTCCCTTCCHHHHHHHHHHCHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHCCCCCCCCCCCccccCcccccCCCCCCHHHHHHHHHhCHHHH
Confidence 346667777777778888999987 499988776665441 11347899999998888888
Q ss_pred HHHHHHHHHHHHHHHHH---HhccCCCEEEEeCCh-----------------HHHHHHHHHHHHcCC-eeEEEEeCCCCC
Q 006256 433 INEKIILADRVIVKHAV---TKIRDGDVLLTYGSS-----------------SAVEMILQHAHELGK-QFRVVIVDSRPK 491 (653)
Q Consensus 433 i~E~i~~a~~~Ia~~a~---~~I~dGdvILT~g~S-----------------s~Ve~vL~~A~e~gk-~f~ViV~ESRP~ 491 (653)
.+. +.+.+.+|.. ++-..|..+.=|||+ +-|..+|+-.+..|+ .||=+++-..|.
T Consensus 292 ~~~----~~~Sm~rhv~am~~~~~~G~~~fDYGN~~r~~a~~aG~~~aF~~P~fV~~~irPlF~~G~GPFRWvalSGdpe 367 (552)
T 2fkn_A 292 VRL----AKQSMKKHVEAMLAFQQKGSIVFDYGNNIRQVAKDEGLENAFDFPGFVPAYIRPLFCEGKGPFRWAALSGDPA 367 (552)
T ss_dssp HHH----HHHHHHHHHHHHHHHHHHTCEECBCSSCHHHHHHHTTCTTGGGSCBHHHHTTHHHHTTTCCCEEEEETTCCHH
T ss_pred HHH----HHHHHHHHHHHHHHHHHCCCeeeeccHHHHHHHHhCChhhcCCCCccHHHHhhhHhhcCCCCceeEEcCCCHH
Confidence 654 5666666644 344578888888886 234555666666666 477777766663
No 142
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=48.86 E-value=62 Score=33.35 Aligned_cols=98 Identities=14% Similarity=0.092 Sum_probs=53.2
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHHHH-HHhCCCCEEEEccchHHHH---hh-hccEEEEc
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLLRR-LVRKGLSCTYTHINAISYI---IH-EVTRVFLG 529 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La~e-L~~~GI~vT~I~DsAv~~i---M~-~Vd~VllG 529 (653)
+.|++-+.+.++..+++.+.+.| -+|++.+ |.+.|. ..... +...|+.+.++....+..+ +. ++..|++
T Consensus 76 ~~i~~~sG~~ai~~~~~~~~~~g--d~vl~~~--~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~- 150 (389)
T 3acz_A 76 GSAAFGSGMGAISSSTLAFLQKG--DHLIAGD--TLYGCTVSLFTHWLPRFGIEVDLIDTSDVEKVKAAWKPNTKMVYL- 150 (389)
T ss_dssp EEEEESSHHHHHHHHHTTTCCTT--CEEEEES--SCCHHHHHHHHHHHHHTTCEEEEECTTCHHHHHHTCCTTEEEEEE-
T ss_pred eEEEeCCHHHHHHHHHHHHhCCC--CEEEEeC--CCchHHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCCCeEEEE-
Confidence 45555554445655554443333 3566654 566653 33333 5778999999864333333 22 3344444
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 530 AdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
..---..|.+.. --.++-+|++|++.++|
T Consensus 151 ~~~~nptG~~~~---l~~i~~~~~~~~~~liv 179 (389)
T 3acz_A 151 ESPANPTCKVSD---IKGIAVVCHERGARLVV 179 (389)
T ss_dssp ESSCTTTCCCCC---HHHHHHHHHHHTCEEEE
T ss_pred ECCCCCCCeecC---HHHHHHHHHHcCCEEEE
Confidence 222222344443 35677889999987765
No 143
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=48.69 E-value=1.1e+02 Score=30.84 Aligned_cols=104 Identities=14% Similarity=0.054 Sum_probs=51.9
Q ss_pred CCCEEE--EeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc---c-------hHHHHhh
Q 006256 454 DGDVLL--TYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---N-------AISYIIH 521 (653)
Q Consensus 454 dGdvIL--T~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D---s-------Av~~iM~ 521 (653)
...+++ |.|.+.+++.+++.+..-...-+|++. .|.+.|.... +...|+.+..+.. . .+-..+.
T Consensus 92 ~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~Vl~~--~p~y~~~~~~--~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~ 167 (396)
T 2q7w_A 92 DKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVS--NPSWPNHKSV--FNSAGLEVREYAYYDAENHTLDFDALINSLN 167 (396)
T ss_dssp TTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEE--ESCCTHHHHH--HHHTTCEEEEEECEETTTTEECHHHHHHHHT
T ss_pred cccEEEEecccchhhHHHHHHHHHHhCCCCEEEEc--CCCchhHHHH--HHHcCCceEEEecccCCCCCcCHHHHHHHHH
Confidence 345665 777677776655444321222355554 3666665433 3446887776643 1 2223333
Q ss_pred h---ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 522 E---VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 522 ~---Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
+ -+++++=..---..|.++..-=-..++-+|++|++.+++
T Consensus 168 ~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 210 (396)
T 2q7w_A 168 EAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLF 210 (396)
T ss_dssp TCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred hCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 2 134443222222334443332223477788888887665
No 144
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=48.65 E-value=44 Score=29.48 Aligned_cols=61 Identities=16% Similarity=0.125 Sum_probs=36.2
Q ss_pred HHHhCCCCEEEEc--cchHHHH---hh--hccEEEEcceeEecCCCeec-ccchHHHHHHHhhCCCCeeeecc
Q 006256 500 RLVRKGLSCTYTH--INAISYI---IH--EVTRVFLGASSVLSNGTVCS-RVGTACVAMVAYGFHIPVLVCCE 564 (653)
Q Consensus 500 eL~~~GI~vT~I~--DsAv~~i---M~--~Vd~VllGAdaIlaNG~V~N-KiGT~~lAl~Ak~~~VPVyV~ae 564 (653)
.|...|++++... ......+ .. ++|+|++|++.- |.+-. -.|+..-.+ .++..+||+|+-+
T Consensus 91 ~~~~~g~~~~~~v~~G~~~~~I~~~a~~~~~dlIV~G~~g~---~~~~~~~~GSv~~~v-l~~~~~pVlvv~~ 159 (162)
T 1mjh_A 91 ELEDVGFKVKDIIVVGIPHEEIVKIAEDEGVDIIIMGSHGK---TNLKEILLGSVTENV-IKKSNKPVLVVKR 159 (162)
T ss_dssp HHHHTTCEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCS---SCCTTCSSCHHHHHH-HHHCCSCEEEECC
T ss_pred HHHHcCCceEEEEcCCCHHHHHHHHHHHcCCCEEEEcCCCC---CCccceEecchHHHH-HHhCCCCEEEEeC
Confidence 4556788876542 2222222 33 699999999853 22222 256654444 4556899999843
No 145
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=48.63 E-value=14 Score=36.63 Aligned_cols=93 Identities=12% Similarity=0.082 Sum_probs=53.1
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcceeE
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSV 533 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAdaI 533 (653)
.|..||..|.+.+-..-++.+.+.|-.+ +|++.....+ +..|.+.| .++++...--...+..+|+||...+.
T Consensus 30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~V--tVvap~~~~~----l~~l~~~~-~i~~i~~~~~~~dL~~adLVIaAT~d- 101 (223)
T 3dfz_A 30 KGRSVLVVGGGTIATRRIKGFLQEGAAI--TVVAPTVSAE----INEWEAKG-QLRVKRKKVGEEDLLNVFFIVVATND- 101 (223)
T ss_dssp TTCCEEEECCSHHHHHHHHHHGGGCCCE--EEECSSCCHH----HHHHHHTT-SCEEECSCCCGGGSSSCSEEEECCCC-
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEE--EEECCCCCHH----HHHHHHcC-CcEEEECCCCHhHhCCCCEEEECCCC-
Confidence 5789999999987767677777777654 4444433322 33454444 34555332212234467777644322
Q ss_pred ecCCCeecccchHHHHHHHhhCCCCeeeec
Q 006256 534 LSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (653)
Q Consensus 534 laNG~V~NKiGT~~lAl~Ak~~~VPVyV~a 563 (653)
.-+ ...++..|+ .+|||-|+-
T Consensus 102 ----~~~----N~~I~~~ak-~gi~VNvvD 122 (223)
T 3dfz_A 102 ----QAV----NKFVKQHIK-NDQLVNMAS 122 (223)
T ss_dssp ----THH----HHHHHHHSC-TTCEEEC--
T ss_pred ----HHH----HHHHHHHHh-CCCEEEEeC
Confidence 122 245777788 999987764
No 146
>3cwc_A Putative glycerate kinase 2; structural genomics, center for structural genomics of infec diseases, csgid, IDP122, transferase; 2.23A {Salmonella typhimurium LT2}
Probab=48.56 E-value=13 Score=39.90 Aligned_cols=62 Identities=15% Similarity=0.174 Sum_probs=41.7
Q ss_pred chHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeeccccc
Q 006256 492 HEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYK 567 (653)
Q Consensus 492 ~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~aetyK 567 (653)
..|.++.-++.. +--.++.+|+||.|=-++-. ....----..+|-+||.|+|||+++|.+..
T Consensus 269 ~~Gi~~v~~~~~------------l~~~l~~ADLVITGEG~~D~--Qtl~GK~p~gVa~~A~~~~vPviaiaG~~~ 330 (383)
T 3cwc_A 269 RRGIEIVTDALH------------LEACLADADLVITGEGRIDS--QTIHGKVPIGVANIAKRYNKPVIGIAGSLT 330 (383)
T ss_dssp ECHHHHHHHHTT------------HHHHHHHCSEEEECCEESCC------CHHHHHHHHHHHHTTCCEEEEEEECC
T ss_pred ccHHHHHHHHhC------------hHhhhcCCCEEEECCCCCcC--cCCCCcHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 457777655542 34557789999999755532 223223346688899999999999998653
No 147
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=48.37 E-value=92 Score=31.26 Aligned_cols=99 Identities=14% Similarity=0.064 Sum_probs=57.1
Q ss_pred CCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc--------chHHHHhh---hc
Q 006256 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIH---EV 523 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D--------sAv~~iM~---~V 523 (653)
..+++|.|.+.++..+++.+.+.| -+|++.+ |.+-|..+...+...|+.+.++.. ..+-..+. ++
T Consensus 60 ~~v~~t~g~t~a~~~~~~~~~~~g--d~Vl~~~--~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~ 135 (392)
T 2z9v_A 60 KPVILHGEPVLGLEAAAASLISPD--DVVLNLA--SGVYGKGFGYWAKRYSPHLLEIEVPYNEAIDPQAVADMLKAHPEI 135 (392)
T ss_dssp CCEEESSCTHHHHHHHHHHHCCTT--CCEEEEE--SSHHHHHHHHHHHHHCSCEEEEECCTTSCCCHHHHHHHHHHCTTC
T ss_pred CEEEEeCCchHHHHHHHHHhcCCC--CEEEEec--CCcccHHHHHHHHHcCCceEEeeCCCCCCCCHHHHHHHHhcCCCC
Confidence 467777777778877666654333 3566543 444444333444556888887742 23334442 34
Q ss_pred cEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 524 d~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
..|++ ..--...|.+.. --.++-+|++|++.+++
T Consensus 136 ~~v~~-~~~~nptG~~~~---l~~i~~l~~~~~~~li~ 169 (392)
T 2z9v_A 136 TVVSV-CHHDTPSGTINP---IDAIGALVSAHGAYLIV 169 (392)
T ss_dssp CEEEE-ESEEGGGTEECC---HHHHHHHHHHTTCEEEE
T ss_pred cEEEE-eccCCCCceecc---HHHHHHHHHHcCCeEEE
Confidence 45544 333333455544 34677789999987765
No 148
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=48.30 E-value=1.9e+02 Score=28.26 Aligned_cols=98 Identities=12% Similarity=0.071 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHcCCeeEEEE-eCCCCCc-------------------hHHHH----HHHHHhCCCCEEEEcc---chHH
Q 006256 465 SAVEMILQHAHELGKQFRVVI-VDSRPKH-------------------EGKLL----LRRLVRKGLSCTYTHI---NAIS 517 (653)
Q Consensus 465 s~Ve~vL~~A~e~gk~f~ViV-~ESRP~~-------------------EG~~L----a~eL~~~GI~vT~I~D---sAv~ 517 (653)
.++...+.-|...+..+.++. ++..|.. ++.+. ...+...|++++.... ....
T Consensus 22 ~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~g~~~~ 101 (319)
T 3olq_A 22 PALRRAVYIVQRNGGRIKAFLPVYDLSYDMTTLLSPDERNAMRKGVINQKTAWIKQQARYYLEAGIQIDIKVIWHNRPYE 101 (319)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEECCGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECSCHHH
T ss_pred HHHHHHHHHHHHcCCeEEEEEEecccchhhccccChhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEEEEEEecCChHH
Confidence 356666666666677777654 3433320 11112 2334467998876533 3333
Q ss_pred HHhh-----hccEEEEcceeEecCCCeecc-cchHHHHHHHhhCCCCeeeecccc
Q 006256 518 YIIH-----EVTRVFLGASSVLSNGTVCSR-VGTACVAMVAYGFHIPVLVCCEAY 566 (653)
Q Consensus 518 ~iM~-----~Vd~VllGAdaIlaNG~V~NK-iGT~~lAl~Ak~~~VPVyV~aety 566 (653)
.++. .+|+|++|.+.- +.+-.. .|+....+ .++.++||+|+-+..
T Consensus 102 ~i~~~a~~~~~DLiV~G~~g~---~~~~~~~~Gs~~~~v-l~~~~~PVlvv~~~~ 152 (319)
T 3olq_A 102 AIIEEVITDKHDLLIKMAHQH---DKLGSLIFTPLDWQL-LRKCPAPVWMVKDKE 152 (319)
T ss_dssp HHHHHHHHHTCSEEEEEEBCC-----CCSCBCCHHHHHH-HHHCSSCEEEEESSC
T ss_pred HHHHHHHhcCCCEEEEecCcC---chhhcccccccHHHH-HhcCCCCEEEecCcc
Confidence 3333 589999999853 222222 57766555 467789999997654
No 149
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}
Probab=47.99 E-value=64 Score=31.87 Aligned_cols=98 Identities=8% Similarity=0.090 Sum_probs=55.1
Q ss_pred CEEEEeCChHHHH-HHHHHHHHcCCeeEEEEeCCCC-C---chHHHHHHHHHhCCCCEEEEc--c-chHHHHhhhccEEE
Q 006256 456 DVLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRP-K---HEGKLLLRRLVRKGLSCTYTH--I-NAISYIIHEVTRVF 527 (653)
Q Consensus 456 dvILT~g~Ss~Ve-~vL~~A~e~gk~f~ViV~ESRP-~---~EG~~La~eL~~~GI~vT~I~--D-sAv~~iM~~Vd~Vl 527 (653)
.+||..|-+..+. .+++.+.++| ++|+++.-.+ . .+....+..|...|+.+.... | .++..++..+|.||
T Consensus 5 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~d~vi 82 (321)
T 3c1o_A 5 EKIIIYGGTGYIGKFMVRASLSFS--HPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVDIVI 82 (321)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHTT--CCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred cEEEEEcCCchhHHHHHHHHHhCC--CcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCCCEEE
Confidence 4577777643332 2234444456 4566654433 1 122333445667787654432 2 34556666666665
Q ss_pred EcceeEecCCCeecccchHHHHHHHhhCC-CCeeee
Q 006256 528 LGASSVLSNGTVCSRVGTACVAMVAYGFH-IPVLVC 562 (653)
Q Consensus 528 lGAdaIlaNG~V~NKiGT~~lAl~Ak~~~-VPVyV~ 562 (653)
.-| +...-.++..+.-+|+..+ +.-+|.
T Consensus 83 ~~a-------~~~~~~~~~~l~~aa~~~g~v~~~v~ 111 (321)
T 3c1o_A 83 SAL-------PFPMISSQIHIINAIKAAGNIKRFLP 111 (321)
T ss_dssp ECC-------CGGGSGGGHHHHHHHHHHCCCCEEEC
T ss_pred ECC-------CccchhhHHHHHHHHHHhCCccEEec
Confidence 433 3334677888888888888 887774
No 150
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=47.44 E-value=59 Score=33.72 Aligned_cols=98 Identities=16% Similarity=0.138 Sum_probs=54.5
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHHHH-HHhCCCCEEEEccc--hHHHHhh-hccEEEEcc
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLLRR-LVRKGLSCTYTHIN--AISYIIH-EVTRVFLGA 530 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La~e-L~~~GI~vT~I~Ds--Av~~iM~-~Vd~VllGA 530 (653)
++++|-|.+.++..+|..+.+.| -+|++.+ |.+.+. ..... +...|+.+.++... .+-..+. ++..|++ .
T Consensus 73 ~~~~~~~gt~a~~~al~~l~~~g--d~vi~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~i~~~~~~v~~-~ 147 (412)
T 2cb1_A 73 EAVVLASGQAATFAALLALLRPG--DEVVAAK--GLFGQTIGLFGQVLSLMGVTVRYVDPEPEAVREALSAKTRAVFV-E 147 (412)
T ss_dssp EEEEESSHHHHHHHHHHTTCCTT--CEEEEET--TCCHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHCCTTEEEEEE-E
T ss_pred cEEEECCHHHHHHHHHHHHhCCC--CEEEEeC--CCchhHHHHHHHHHHHcCCEEEEECCCHHHHHHHhccCCeEEEE-e
Confidence 56777666667766665553333 3566644 555543 22333 56689999988643 2222222 3344444 2
Q ss_pred eeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 531 SSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 531 daIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
..--..|.+.. --.++-+|++|++.+++
T Consensus 148 ~~~n~~G~~~~---l~~i~~l~~~~~~~li~ 175 (412)
T 2cb1_A 148 TVANPALLVPD---LEALATLAEEAGVALVV 175 (412)
T ss_dssp SSCTTTCCCCC---HHHHHHHHHHHTCEEEE
T ss_pred CCCCCCccccc---HHHHHHHHHHcCCEEEE
Confidence 11223454442 45677889999998776
No 151
>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA) sandwich, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125}
Probab=47.28 E-value=93 Score=30.07 Aligned_cols=41 Identities=10% Similarity=-0.151 Sum_probs=31.7
Q ss_pred CCCCchHHHHHHHHHhCCCCEEEEccchHH-----------HHhhhccEEEE
Q 006256 488 SRPKHEGKLLLRRLVRKGLSCTYTHINAIS-----------YIIHEVTRVFL 528 (653)
Q Consensus 488 SRP~~EG~~La~eL~~~GI~vT~I~DsAv~-----------~iM~~Vd~Vll 528 (653)
|+--.+=.++++.+.+.|+++..|+++.-+ .+.+.+|.+|.
T Consensus 118 SG~t~~~i~~~~~Ak~~G~~vI~IT~~~~s~~~~~~~~~g~~La~~aD~~l~ 169 (243)
T 3cvj_A 118 SGRNTVPVEMAIESRNIGAKVIAMTSMKHSQKVTSRHKSGKKLYEYADVVLD 169 (243)
T ss_dssp SCCSHHHHHHHHHHHHHTCEEEEEECHHHHHHSCCCSTTSCCGGGGCSEEEE
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCcccccccccCCCcCcHHHhCCEEEE
Confidence 333345567778899999999999998776 67778998885
No 152
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=47.22 E-value=1.5e+02 Score=29.96 Aligned_cols=33 Identities=21% Similarity=0.298 Sum_probs=19.7
Q ss_pred CCCEEEEeCChHHHHHHHHHHHH------cCCeeEEEEeC
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHE------LGKQFRVVIVD 487 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e------~gk~f~ViV~E 487 (653)
...+++|.|.+.++..+|+.+.. .|+. +|++.+
T Consensus 97 ~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~~~-~vi~~~ 135 (397)
T 2ord_A 97 GGKVFFANTGTEANEAAIKIARKYGKKKSEKKY-RILSAH 135 (397)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHHHHHHHCTTCC-EEEEEB
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHHhhcCCCCCc-eEEEEc
Confidence 34567777777788776665543 2333 566664
No 153
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=46.88 E-value=56 Score=34.41 Aligned_cols=97 Identities=18% Similarity=0.143 Sum_probs=52.9
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHH-H-HHHHhCCCCEEEEccch---HHHHhh-hccEEEEc
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-L-RRLVRKGLSCTYTHINA---ISYIIH-EVTRVFLG 529 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~L-a-~eL~~~GI~vT~I~DsA---v~~iM~-~Vd~VllG 529 (653)
++|+|-+.+.++..+|..+.+.| -+|++. .|.+.|... . ..+...|+.++++.... +-..+. ++.+|++
T Consensus 98 ~~~~~~sG~~Ai~~al~~l~~~G--d~Vi~~--~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~ai~~~t~~v~l- 172 (414)
T 3ndn_A 98 AAFATASGMAAVFTSLGALLGAG--DRLVAA--RSLFGSCFVVCSEILPRWGVQTVFVDGDDLSQWERALSVPTQAVFF- 172 (414)
T ss_dssp EEEEESSHHHHHHHHHHTTCCTT--CEEEEE--SCCCHHHHHHHHTHHHHTTCEEEEECTTCHHHHHHHTSSCCSEEEE-
T ss_pred cEEEECCHHHHHHHHHHHHhCCC--CEEEEc--CCccchHHHHHHHHHHHcCcEEEEeCCCCHHHHHHhcCCCCeEEEE-
Confidence 34555444456655555443333 355554 355655433 3 23567899999986433 333333 4555555
Q ss_pred ceeEe-cCCCeecccchHHHHHHHhhCCCCeee
Q 006256 530 ASSVL-SNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 530 AdaIl-aNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
+.+. ..|.+.. --.|+-+|++|+++++|
T Consensus 173 -e~p~NptG~~~~---l~~i~~la~~~g~~liv 201 (414)
T 3ndn_A 173 -ETPSNPMQSLVD---IAAVTELAHAAGAKVVL 201 (414)
T ss_dssp -ESSCTTTCCCCC---HHHHHHHHHHTTCEEEE
T ss_pred -ECCCCCCCcccc---HHHHHHHHHHcCCEEEE
Confidence 2222 2233322 34677889999998776
No 154
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=46.71 E-value=46 Score=35.71 Aligned_cols=99 Identities=17% Similarity=0.160 Sum_probs=55.8
Q ss_pred EEEeCChHHHHHHHHHHHHcCC------eeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc--------hHHHHhhhc
Q 006256 458 LLTYGSSSAVEMILQHAHELGK------QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN--------AISYIIHEV 523 (653)
Q Consensus 458 ILT~g~Ss~Ve~vL~~A~e~gk------~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds--------Av~~iM~~V 523 (653)
++|.|.+.++..+|+.+.+.|. +-+|++. .|.+.+.. ..+...|+.+..+.-. ++-..+.+-
T Consensus 164 ~~t~ggt~a~~~al~a~~~~g~~~~g~~~d~Vi~~--~~~~~~~~--~~~~~~G~~v~~v~~~~~~~~d~~~Le~~i~~~ 239 (514)
T 3mad_A 164 TVTSGGTESLLLAMKTYRDWARATKGITAPEAVVP--VSAHAAFD--KAAQYFGIKLVRTPLDADYRADVAAMREAITPN 239 (514)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHHHHCCSSCEEEEE--TTSCTHHH--HHHHHHTCEEEEECBCTTSCBCHHHHHHHCCTT
T ss_pred EEcCcHHHHHHHHHHHHHHHhhhhcCCCCCeEEEe--CccchHHH--HHHHHcCCeeEEeeeCCCCCCCHHHHHHHhccC
Confidence 7888877788777776654431 1356663 45555533 3334458888888622 233333322
Q ss_pred cEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeec
Q 006256 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (653)
Q Consensus 524 d~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~a 563 (653)
.++|+...--...|.+.. --.|+-+|+.|+++++|=+
T Consensus 240 ~~~v~~~~~~nptG~~~~---l~~i~~la~~~~i~livDe 276 (514)
T 3mad_A 240 TVVVAGSAPGYPHGVVDP---IPEIAALAAEHGIGCHVDA 276 (514)
T ss_dssp EEEEEEETTCTTTCCCCC---HHHHHHHHHHHTCEEEEEC
T ss_pred CEEEEEeCCCCCCccccC---HHHHHHHHHHhCCeEEEec
Confidence 234433322223355443 3567888999999888743
No 155
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=46.71 E-value=60 Score=33.97 Aligned_cols=97 Identities=15% Similarity=0.135 Sum_probs=53.8
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHH--HHHhCCCCEEEE-ccc---hHHHHhh-hccEEEE
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLR--RLVRKGLSCTYT-HIN---AISYIIH-EVTRVFL 528 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~--eL~~~GI~vT~I-~Ds---Av~~iM~-~Vd~Vll 528 (653)
+.|++-+.+.++..+|..+...| -+|++ +.|.+.|..... .+...|+.++++ ... .+-..+. ++.+|++
T Consensus 75 ~~v~~~sGt~A~~~~l~~~~~~g--d~vi~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~i~~~~~~v~~ 150 (421)
T 2ctz_A 75 AALATASGHAAQFLALTTLAQAG--DNIVS--TPNLYGGTFNQFKVTLKRLGIEVRFTSREERPEEFLALTDEKTRAWWV 150 (421)
T ss_dssp EEEEESSHHHHHHHHHHHHCCTT--CEEEE--CSCCCHHHHHHHHTHHHHTTCEEEECCTTCCHHHHHHHCCTTEEEEEE
T ss_pred ceEEecCHHHHHHHHHHHHhCCC--CEEEE--eCCCchHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHhhccCCeEEEE
Confidence 34544443556666665553333 35655 345666654432 256789999988 532 3333333 3334443
Q ss_pred cceeEec-CCCeecccchHHHHHHHhhCCCCeee
Q 006256 529 GASSVLS-NGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 529 GAdaIla-NG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
+.+.. .|.+.. --.++-+|++|+++++|
T Consensus 151 --~~~~n~~G~~~~---l~~i~~~a~~~g~~liv 179 (421)
T 2ctz_A 151 --ESIGNPALNIPD---LEALAQAAREKGVALIV 179 (421)
T ss_dssp --ESSCTTTCCCCC---HHHHHHHHHHHTCEEEE
T ss_pred --ECCCCCCCcccC---HHHHHHHHHHcCCEEEE
Confidence 33332 344443 45678899999998776
No 156
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=46.42 E-value=66 Score=27.05 Aligned_cols=58 Identities=14% Similarity=0.098 Sum_probs=39.2
Q ss_pred EEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCC-CCchHHHHHHHHHh------CCCCEEEEccc
Q 006256 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSR-PKHEGKLLLRRLVR------KGLSCTYTHIN 514 (653)
Q Consensus 457 vILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESR-P~~EG~~La~eL~~------~GI~vT~I~Ds 514 (653)
.|.+..........|....+.+..+.++++|-. |...|..+++.|.+ ..+++.+++..
T Consensus 37 ~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~~~ii~~t~~ 101 (146)
T 3ilh_A 37 EIQSVTSGNAAINKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQHFQPMKNKSIVCLLSSS 101 (146)
T ss_dssp EEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHHHHHCGGGTTTCEEEEECSS
T ss_pred eeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCHHHHHHHHHHhhhhccCCCeEEEEeCC
Confidence 566666655443555554445577888888754 88899999998887 45666666543
No 157
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=46.31 E-value=65 Score=28.72 Aligned_cols=93 Identities=17% Similarity=0.194 Sum_probs=50.9
Q ss_pred cCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHH-hCCCCEEEEccch----HHHH-hhhccEE
Q 006256 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLV-RKGLSCTYTHINA----ISYI-IHEVTRV 526 (653)
Q Consensus 453 ~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~-~~GI~vT~I~DsA----v~~i-M~~Vd~V 526 (653)
..++.|+.+|.+..=..+.+.+.+.| ++|++++..|.. +..|. ..|+.+.. .|.. +... +..+|.|
T Consensus 17 ~~~~~v~IiG~G~iG~~la~~L~~~g--~~V~vid~~~~~-----~~~~~~~~g~~~~~-~d~~~~~~l~~~~~~~ad~V 88 (155)
T 2g1u_A 17 QKSKYIVIFGCGRLGSLIANLASSSG--HSVVVVDKNEYA-----FHRLNSEFSGFTVV-GDAAEFETLKECGMEKADMV 88 (155)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCGGG-----GGGSCTTCCSEEEE-SCTTSHHHHHTTTGGGCSEE
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCC--CeEEEEECCHHH-----HHHHHhcCCCcEEE-ecCCCHHHHHHcCcccCCEE
Confidence 45789999999876545555665556 478888766542 22344 45665432 2211 1111 4467777
Q ss_pred EEcceeEecCCCeecccchHHHHHHHhh-CCCCeeee
Q 006256 527 FLGASSVLSNGTVCSRVGTACVAMVAYG-FHIPVLVC 562 (653)
Q Consensus 527 llGAdaIlaNG~V~NKiGT~~lAl~Ak~-~~VPVyV~ 562 (653)
|+.... ..-...++.+++. ++...+|+
T Consensus 89 i~~~~~---------~~~~~~~~~~~~~~~~~~~iv~ 116 (155)
T 2g1u_A 89 FAFTND---------DSTNFFISMNARYMFNVENVIA 116 (155)
T ss_dssp EECSSC---------HHHHHHHHHHHHHTSCCSEEEE
T ss_pred EEEeCC---------cHHHHHHHHHHHHHCCCCeEEE
Confidence 665432 1122445566776 66554444
No 158
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=46.27 E-value=71 Score=33.01 Aligned_cols=97 Identities=15% Similarity=0.110 Sum_probs=54.2
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHH-HHHHhCCCCEEEEccchHHHH---hh-hccEEEEc
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHINAISYI---IH-EVTRVFLG 529 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La-~eL~~~GI~vT~I~DsAv~~i---M~-~Vd~VllG 529 (653)
+.|+|-+.+.++..+|..+.+.| -+|++. .|.+.|. .+. ..+...|+.++++....+..+ +. ++.+|++
T Consensus 83 ~~~~~~sGt~A~~~al~~~~~~g--d~Vi~~--~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~- 157 (392)
T 3qhx_A 83 FGRAFSSGMAAADCALRAMLRPG--DHVVIP--DDAYGGTFRLIDKVFTGWNVEYTPVALADLDAVRAAIRPTTRLIWV- 157 (392)
T ss_dssp EEEEESSHHHHHHHHHHHHCCTT--CEEEEE--TTCCHHHHHHHHHTGGGGTCEEEEECTTCHHHHHHHCCTTEEEEEE-
T ss_pred cEEEECCHHHHHHHHHHHHhCCC--CEEEEe--CCCcchHHHHHHHHHHhcCcEEEEeCCCCHHHHHHhhCCCCeEEEE-
Confidence 45666555567766666554334 355553 4555554 333 334678999999964333333 32 3444443
Q ss_pred ceeEe-cCCCeecccchHHHHHHHhhCCCCeee
Q 006256 530 ASSVL-SNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 530 AdaIl-aNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
+.+. ..|.+.. --.|+-+|++|++.++|
T Consensus 158 -~~~~nptG~~~~---l~~i~~la~~~g~~li~ 186 (392)
T 3qhx_A 158 -ETPTNPLLSIAD---IAGIAQLGADSSAKVLV 186 (392)
T ss_dssp -ESSCTTTCCCCC---HHHHHHHHHHHTCEEEE
T ss_pred -ECCCCCCcEEec---HHHHHHHHHHcCCEEEE
Confidence 2222 2232222 35678889999998776
No 159
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=46.09 E-value=80 Score=31.38 Aligned_cols=97 Identities=13% Similarity=0.082 Sum_probs=54.5
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc--------chHHHHhhh--ccE
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIHE--VTR 525 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D--------sAv~~iM~~--Vd~ 525 (653)
.+++|.|.+.++. +|..+.+.| -+|++.+ |.+-|..+...+...|+.+..+.. ..+-..+.+ +..
T Consensus 56 ~v~~~~g~t~al~-~~~~~~~~g--d~vi~~~--~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~ 130 (384)
T 3zrp_A 56 PLIIPGGGTSAME-SVTSLLKPN--DKILVVS--NGVFGDRWEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEVRKSEYKL 130 (384)
T ss_dssp EEEEESCHHHHHH-HGGGGCCTT--CEEEEEC--SSHHHHHHHHHHTTSSCEEEEECCSTTCCCCHHHHHHHHHHSCEEE
T ss_pred EEEEcCCcHHHHH-HHHhhcCCC--CEEEEec--CCcchHHHHHHHHHcCCcEEEecCCCCCCCCHHHHHHHHHhCCCcE
Confidence 3677777777887 666554333 3566654 334444444445667988888752 223333433 333
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 526 VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
|++ ..-=...|.+.. --.|+-+|+.|++.+++
T Consensus 131 v~~-~~~~nptG~~~~---l~~i~~l~~~~~~~li~ 162 (384)
T 3zrp_A 131 VAL-THVETSTGVREP---VKDVINKIRKYVELIVV 162 (384)
T ss_dssp EEE-ESEETTTTEECC---HHHHHHHHGGGEEEEEE
T ss_pred EEE-eCCCCCCceECc---HHHHHHHHHhcCCEEEE
Confidence 333 232233454443 34577789999987766
No 160
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=45.84 E-value=81 Score=31.72 Aligned_cols=98 Identities=16% Similarity=0.159 Sum_probs=56.5
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc--------chHHHHhh--hccE
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIH--EVTR 525 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D--------sAv~~iM~--~Vd~ 525 (653)
.+++|.|.+.++..+++.+.+.|. +|++. .|.+.+..+...+...|+.+.++.. ..+-..+. ++..
T Consensus 71 ~v~~~~g~t~al~~~~~~~~~~gd--~vl~~--~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~ 146 (396)
T 2ch1_A 71 TMCVSGSAHAGMEAMLSNLLEEGD--RVLIA--VNGIWAERAVEMSERYGADVRTIEGPPDRPFSLETLARAIELHQPKC 146 (396)
T ss_dssp EEEESSCHHHHHHHHHHHHCCTTC--EEEEE--ESSHHHHHHHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSE
T ss_pred EEEECCcHHHHHHHHHHHhcCCCC--eEEEE--cCCcccHHHHHHHHHcCCceEEecCCCCCCCCHHHHHHHHHhCCCCE
Confidence 356666666777666666544343 55554 3556665433455667988887752 12333333 3556
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 526 VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
|++ ..---..|.++. --.++-+|++|++.+++
T Consensus 147 v~~-~~~~nptG~~~~---~~~i~~l~~~~~~~li~ 178 (396)
T 2ch1_A 147 LFL-THGDSSSGLLQP---LEGVGQICHQHDCLLIV 178 (396)
T ss_dssp EEE-ESEETTTTEECC---CTTHHHHHHHTTCEEEE
T ss_pred EEE-ECCCCCCceecC---HHHHHHHHHHcCCEEEE
Confidence 655 332234466555 23567788889986655
No 161
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=45.81 E-value=63 Score=27.52 Aligned_cols=91 Identities=12% Similarity=0.148 Sum_probs=49.0
Q ss_pred CCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccch----HHHH-hhhccEEEEc
Q 006256 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA----ISYI-IHEVTRVFLG 529 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsA----v~~i-M~~Vd~VllG 529 (653)
+..|+.+|.+..=..+.+.+.+.|. +|++++..+ .-+..+.+.|+.+ +..|.. +..+ +.++|.||+.
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~~g~--~v~~~d~~~-----~~~~~~~~~~~~~-~~~d~~~~~~l~~~~~~~~d~vi~~ 77 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHRMGH--EVLAVDINE-----EKVNAYASYATHA-VIANATEENELLSLGIRNFEYVIVA 77 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTC--CCEEEESCH-----HHHHTTTTTCSEE-EECCTTCHHHHHTTTGGGCSEEEEC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCC--EEEEEeCCH-----HHHHHHHHhCCEE-EEeCCCCHHHHHhcCCCCCCEEEEC
Confidence 4568888887654455555666664 566666543 1233455556643 222321 1111 4567777765
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 530 AdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
+..- .--...++..|+.++++.+|
T Consensus 78 ~~~~--------~~~~~~~~~~~~~~~~~~ii 101 (144)
T 2hmt_A 78 IGAN--------IQASTLTTLLLKELDIPNIW 101 (144)
T ss_dssp CCSC--------HHHHHHHHHHHHHTTCSEEE
T ss_pred CCCc--------hHHHHHHHHHHHHcCCCeEE
Confidence 4320 01123567788888887444
No 162
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=45.74 E-value=94 Score=30.55 Aligned_cols=98 Identities=21% Similarity=0.226 Sum_probs=53.1
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc--------chHHHHhhh---cc
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIHE---VT 524 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D--------sAv~~iM~~---Vd 524 (653)
.+++|.|.+.++..+++.+.+.|. +|++.+ .|.+.. .+...+...|+.+..+.. ..+-..+.+ +.
T Consensus 58 ~v~~~~g~t~a~~~~~~~~~~~gd--~vi~~~-~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~ 133 (366)
T 1m32_A 58 SVLLQGSGSYAVEAVLGSALGPQD--KVLIVS-NGAYGA-RMVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNADPTIS 133 (366)
T ss_dssp EEEEESCHHHHHHHHHHHSCCTTC--CEEEEE-SSHHHH-HHHHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHHCTTCC
T ss_pred EEEEecChHHHHHHHHHHhcCCCC--eEEEEe-CCCccH-HHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcCCCeE
Confidence 477777777788666665543333 455543 333322 233344556888877742 223333432 33
Q ss_pred EEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 525 ~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
.|++ ...=...|.++. --.++-+|++|++.+++
T Consensus 134 ~v~~-~~~~nptG~~~~---l~~i~~l~~~~~~~li~ 166 (366)
T 1m32_A 134 HIAM-VHSETTTGMLNP---IDEVGALAHRYGKTYIV 166 (366)
T ss_dssp EEEE-ESEETTTTEECC---HHHHHHHHHHHTCEEEE
T ss_pred EEEE-ecccCCcceecC---HHHHHHHHHHcCCEEEE
Confidence 3332 221122376665 34677789999987665
No 163
>3k6m_A Succinyl-COA:3-ketoacid-coenzyme A transferase 1, mitochondrial; SCOT, COA transferase, dynamic domain, glycerol, mitochondri transferase; 1.50A {Sus scrofa} PDB: 1m3e_A* 1o9l_A 1ooy_A 2nrc_A 2nrb_A 3oxo_A* 1ooz_A 1ope_A 3dlx_A
Probab=45.49 E-value=32 Score=37.98 Aligned_cols=96 Identities=18% Similarity=0.190 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCh--HHHHHHHHHHHHcCCeeEEEEeCC-----CCCchHHHHHHHHHhCCC-CEE--
Q 006256 440 ADRVIVKHAVTKIRDGDVLLTYGSS--SAVEMILQHAHELGKQFRVVIVDS-----RPKHEGKLLLRRLVRKGL-SCT-- 509 (653)
Q Consensus 440 a~~~Ia~~a~~~I~dGdvILT~g~S--s~Ve~vL~~A~e~gk~f~ViV~ES-----RP~~EG~~La~eL~~~GI-~vT-- 509 (653)
.++.|+.+++..|+||++|- .|-+ ++|..++ ..++.+ .+..|+ .|+...-..-..|.+.|- .++
T Consensus 262 ~~~~Ia~raA~el~dG~~vn-lGIGiP~~v~~~~----~~~~~l-~l~~E~G~~g~~p~~~~~~~d~~~in~Gk~~~t~~ 335 (481)
T 3k6m_A 262 VRERIIKRAALEFEDGMYAN-LGIGIPLLASNFI----SPNMTV-HLQSENGILGLGPYPLQNEVDADLINAGKETVTVL 335 (481)
T ss_dssp CHHHHHHHHGGGCCTTEEEE-ECTTHHHHHGGGC----CTTSCE-EEEETTTEEEECCCCCGGGCCTTCBCTTSBBCCEE
T ss_pred HHHHHHHHHHHhcCCCCEEE-EccCHHHHHHhhh----ccCCcE-EEEECCcEeCCccCCCCCccCcccccCCCceEecc
Confidence 45679999999999997543 3554 3443333 234433 333443 444321111123444552 232
Q ss_pred ---EEccchHHHHh-h--hccEEEEcceeEecCCCeec
Q 006256 510 ---YTHINAISYII-H--EVTRVFLGASSVLSNGTVCS 541 (653)
Q Consensus 510 ---~I~DsAv~~iM-~--~Vd~VllGAdaIlaNG~V~N 541 (653)
-+.|+.-.|-| . ++|..|+||=-|-.+|.+.|
T Consensus 336 ~g~~~~~~~~~F~~~~gG~~Dv~ilga~qVD~~Gnvn~ 373 (481)
T 3k6m_A 336 PGASYFSSDESFAMIRGGHVNLTMLGAMQVSKYGDLAN 373 (481)
T ss_dssp EEEEECCHHHHHHHHHTTCCSEEEECCSEEETTCCEEC
T ss_pred ccceecCCHHHeeeecCCCeEEEEechHhccCCCCccc
Confidence 23455544444 4 69999999999999999854
No 164
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=45.42 E-value=98 Score=31.04 Aligned_cols=99 Identities=12% Similarity=0.012 Sum_probs=54.9
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc--------chHHHHh-hhccEE
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYII-HEVTRV 526 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D--------sAv~~iM-~~Vd~V 526 (653)
.+++|-|.+.++..+++.+.+.| -+|++. .|.+.|.... +...|+.+..+.. ..+-..+ .++..|
T Consensus 89 ~v~~~~g~~~a~~~~~~~l~~~g--d~vl~~--~p~y~~~~~~--~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v 162 (376)
T 2dou_A 89 EALALIGSQEGLAHLLLALTEPE--DLLLLP--EVAYPSYFGA--ARVASLRTFLIPLREDGLADLKAVPEGVWREAKVL 162 (376)
T ss_dssp SEEEESSHHHHHHHHHHHHCCTT--CEEEEE--SSCCHHHHHH--HHHTTCEEEEECBCTTSSBCGGGSCHHHHHHEEEE
T ss_pred cEEEcCCcHHHHHHHHHHhcCCC--CEEEEC--CCCcHhHHHH--HHHcCCEEEEeeCCCCCCCCHHHHHHhhccCceEE
Confidence 67888887778876666554333 356554 4667665433 4457888877752 1222222 345555
Q ss_pred EEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 527 FLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 527 llGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
++- .---..|.++..-=-..++-+|++|++.+++
T Consensus 163 ~l~-~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 196 (376)
T 2dou_A 163 LLN-YPNNPTGAVADWGYFEEALGLARKHGLWLIH 196 (376)
T ss_dssp EEC-SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred EEC-CCCCCcCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 553 2112234443321123466788999997765
No 165
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=45.38 E-value=1.1e+02 Score=27.50 Aligned_cols=62 Identities=11% Similarity=0.209 Sum_probs=36.3
Q ss_pred HHHHhCCCC-EEEEc--cchHHHHhh-----hccEEEEcceeEecCCCeec-ccchHHHHHHHhhCCCCeeeecc
Q 006256 499 RRLVRKGLS-CTYTH--INAISYIIH-----EVTRVFLGASSVLSNGTVCS-RVGTACVAMVAYGFHIPVLVCCE 564 (653)
Q Consensus 499 ~eL~~~GI~-vT~I~--DsAv~~iM~-----~Vd~VllGAdaIlaNG~V~N-KiGT~~lAl~Ak~~~VPVyV~ae 564 (653)
..|...|++ ++... ....-.++. ++|+|++|+..- |.+-. -.|+..--+ .++..+||+|+-+
T Consensus 88 ~~~~~~gv~~v~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~---~~~~~~~lGSva~~v-l~~a~~PVlvV~~ 158 (163)
T 1tq8_A 88 ERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGL---STIAGRLLGSVPANV-SRRAKVDVLIVHT 158 (163)
T ss_dssp HHHHTTTCCEEEEEEECSSHHHHHHHHHHHTTCSEEEEECCCC---CSHHHHHTBBHHHHH-HHHTTCEEEEECC
T ss_pred HHHHHcCCCeEEEEEecCCHHHHHHHHHHhcCCCEEEECCCCC---CcccceeeccHHHHH-HHhCCCCEEEEeC
Confidence 345567998 65432 333333333 699999999743 22211 246554444 4556799999843
No 166
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=45.01 E-value=1e+02 Score=31.52 Aligned_cols=98 Identities=15% Similarity=0.106 Sum_probs=54.2
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH-HH-HHhCCCCEEEEccchHHHHhh----hccEEEEc
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RR-LVRKGLSCTYTHINAISYIIH----EVTRVFLG 529 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La-~e-L~~~GI~vT~I~DsAv~~iM~----~Vd~VllG 529 (653)
+.|++-+.+.++..+|+.+.+.| -+|++. .|.+.+.... .. +...|+.+.++....+..+-. ++..|++
T Consensus 81 ~~i~~~sG~~a~~~~l~~~~~~g--d~vi~~--~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~- 155 (398)
T 2rfv_A 81 AGLATASGISAITTTLLTLCQQG--DHIVSA--SAIYGCTHAFLSHSMPKFGINVRFVDAAKPEEIRAAMRPETKVVYI- 155 (398)
T ss_dssp EEEEESSHHHHHHHHHHHHCCTT--CEEEEE--SSSCHHHHHHHHTHHHHTTCEEEEECTTSHHHHHHHCCTTEEEEEE-
T ss_pred cEEEECCHHHHHHHHHHHHhCCC--CEEEEc--CCCcccHHHHHHHHHHHcCCEEEEeCCCCHHHHHHhcCCCCeEEEE-
Confidence 55666555556666665554333 356654 4566665433 22 367899998886433333332 3334443
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 530 AdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
..---..|.+.. -..++-+|++|++.+++
T Consensus 156 ~~~~nptG~~~~---l~~i~~l~~~~~~~li~ 184 (398)
T 2rfv_A 156 ETPANPTLSLVD---IETVAGIAHQQGALLVV 184 (398)
T ss_dssp ESSBTTTTBCCC---HHHHHHHHHHTTCEEEE
T ss_pred ECCCCCCCcccC---HHHHHHHHHHcCCEEEE
Confidence 221122344443 45677889999987765
No 167
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=44.68 E-value=1.7e+02 Score=31.07 Aligned_cols=103 Identities=15% Similarity=0.107 Sum_probs=54.1
Q ss_pred CCCEEEEeCChHHHHHHHHHHHH--------cC----CeeEEEEeCCCCCchHHHHHHHHHhCCC-CEEEEccc------
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHE--------LG----KQFRVVIVDSRPKHEGKLLLRRLVRKGL-SCTYTHIN------ 514 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e--------~g----k~f~ViV~ESRP~~EG~~La~eL~~~GI-~vT~I~Ds------ 514 (653)
.+..++|-|-+.++...|..+.+ .| .+..|++.+ +.+-...-+..+...|. .+..|...
T Consensus 151 ~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~--~~h~s~~~~~~~~g~g~~~v~~v~~~~~~~~d 228 (504)
T 2okj_A 151 DGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSE--QSHYSIKKAGAALGFGTDNVILIKCNERGKII 228 (504)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEET--TSCTHHHHHHHHTTSCGGGEEEECBCTTSCBC
T ss_pred CCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECC--cchHHHHHHHHHcCCCcccEEEEecCCCCCCC
Confidence 34678887777777666666642 35 244677754 33333332323333344 77777532
Q ss_pred --hHHHHhhh------ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 515 --AISYIIHE------VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 515 --Av~~iM~~------Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
++-..+.+ ..++|+....-...|.+. . --.|+-+|+.|++.|+|
T Consensus 229 ~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~-~--l~~I~~la~~~g~~lhv 280 (504)
T 2okj_A 229 PADFEAKILEAKQKGYVPFYVNATAGTTVYGAFD-P--IQEIADICEKYNLWLHV 280 (504)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBC-C--HHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcC-C--HHHHHHHHHHcCCEEEE
Confidence 23333433 234444322222224332 2 24677889999998876
No 168
>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A
Probab=44.38 E-value=55 Score=32.05 Aligned_cols=108 Identities=14% Similarity=0.145 Sum_probs=58.3
Q ss_pred CCEEEEeCChHHHHH-HHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc--c-chHHHHhhhccEEEEcc
Q 006256 455 GDVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH--I-NAISYIIHEVTRVFLGA 530 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~-vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~--D-sAv~~iM~~Vd~VllGA 530 (653)
+.+||..|-+..+.. +++.+.++|. ++|+++.-.|... -+..|...|+.+.... | ..+..++..+|.||.-|
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~~V~~~~R~~~~~---~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a 80 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGT-FKVRVVTRNPRKK---AAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVT 80 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCS-SEEEEEESCTTSH---HHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECC
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCC-ceEEEEEcCCCCH---HHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeC
Confidence 357888887655433 3344444452 5677665444322 1245556676554321 2 34556677777777654
Q ss_pred eeEecCCCeecccchHHHHHHHhhCCCCeeeecccc
Q 006256 531 SSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (653)
Q Consensus 531 daIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~aety 566 (653)
...-....-.|-.|+..+.-+|+..++.-+|.+.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~aa~~~gv~~iv~~S~~ 116 (299)
T 2wm3_A 81 NYWESCSQEQEVKQGKLLADLARRLGLHYVVYSGLE 116 (299)
T ss_dssp CHHHHTCHHHHHHHHHHHHHHHHHHTCSEEEECCCC
T ss_pred CCCccccchHHHHHHHHHHHHHHHcCCCEEEEEcCc
Confidence 211100111233467777777777888777765543
No 169
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=43.92 E-value=53 Score=32.10 Aligned_cols=74 Identities=18% Similarity=0.168 Sum_probs=43.6
Q ss_pred EEEEeCChHHHHHHHHHHHHcCC-eeEEE-EeCCCCCchHHHHHHHHHhCCCCEEEEc----------cchHHHHhh--h
Q 006256 457 VLLTYGSSSAVEMILQHAHELGK-QFRVV-IVDSRPKHEGKLLLRRLVRKGLSCTYTH----------INAISYIIH--E 522 (653)
Q Consensus 457 vILT~g~Ss~Ve~vL~~A~e~gk-~f~Vi-V~ESRP~~EG~~La~eL~~~GI~vT~I~----------DsAv~~iM~--~ 522 (653)
.||.-|+++.++.+|.. .+++. .+.|. |+-.+|...|.+. ..+.|||+.++. |..+...++ +
T Consensus 4 ~vl~Sg~gsnl~ali~~-~~~~~~~~~i~~Vis~~~~~~~~~~---A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~ 79 (212)
T 1jkx_A 4 VVLISGNGSNLQAIIDA-CKTNKIKGTVRAVFSNKADAFGLER---ARQAGIATHTLIASAFDSREAYDRELIHEIDMYA 79 (212)
T ss_dssp EEEESSCCHHHHHHHHH-HHTTSSSSEEEEEEESCTTCHHHHH---HHHTTCEEEECCGGGCSSHHHHHHHHHHHHGGGC
T ss_pred EEEEECCcHHHHHHHHH-HHcCCCCceEEEEEeCCCchHHHHH---HHHcCCcEEEeCcccccchhhccHHHHHHHHhcC
Confidence 47777888888666554 44443 34443 3333455556444 456899998864 233444444 5
Q ss_pred ccEEEEcce-eEe
Q 006256 523 VTRVFLGAS-SVL 534 (653)
Q Consensus 523 Vd~VllGAd-aIl 534 (653)
+|.+++-+- .|+
T Consensus 80 ~Dliv~agy~~il 92 (212)
T 1jkx_A 80 PDVVVLAGFMRIL 92 (212)
T ss_dssp CSEEEESSCCSCC
T ss_pred CCEEEEeChhhhC
Confidence 788877443 444
No 170
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=43.84 E-value=1.6e+02 Score=28.96 Aligned_cols=109 Identities=13% Similarity=0.130 Sum_probs=67.4
Q ss_pred HHHHHHHhccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCC---------CCC---------chHHHHHHHHHhC-
Q 006256 444 IVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDS---------RPK---------HEGKLLLRRLVRK- 504 (653)
Q Consensus 444 Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ES---------RP~---------~EG~~La~eL~~~- 504 (653)
++..+.+.+. +..||..|.+.+=..++..+...|.. ++.++|. |-. .....++++|.+.
T Consensus 18 ~g~~~q~~l~-~~~VlvvG~GglG~~va~~La~~Gvg-~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n 95 (251)
T 1zud_1 18 IALDGQQKLL-DSQVLIIGLGGLGTPAALYLAGAGVG-TLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLN 95 (251)
T ss_dssp THHHHHHHHH-TCEEEEECCSTTHHHHHHHHHHTTCS-EEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHC
T ss_pred cCHHHHHHHh-cCcEEEEccCHHHHHHHHHHHHcCCC-eEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHC
Confidence 4556666665 57888998865444455566666764 4444443 221 1233445666653
Q ss_pred -CCCEEEEc----cchHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeec
Q 006256 505 -GLSCTYTH----INAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (653)
Q Consensus 505 -GI~vT~I~----DsAv~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~a 563 (653)
++.++.+. +..+..++.++|.||...|..- --+.+.-.|+.+++|++.+.
T Consensus 96 p~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~---------~r~~l~~~~~~~~~p~i~~~ 150 (251)
T 1zud_1 96 PDIQLTALQQRLTGEALKDAVARADVVLDCTDNMA---------TRQEINAACVALNTPLITAS 150 (251)
T ss_dssp TTSEEEEECSCCCHHHHHHHHHHCSEEEECCSSHH---------HHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEECCCCHH---------HHHHHHHHHHHhCCCEEEEe
Confidence 66776654 2345667788999988766432 23567778888999987654
No 171
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=43.72 E-value=66 Score=31.47 Aligned_cols=96 Identities=14% Similarity=0.072 Sum_probs=52.7
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc--------chHHHHhh--hccE
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIH--EVTR 525 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D--------sAv~~iM~--~Vd~ 525 (653)
.+++|.|.+.++..+++.+.+ -+|++.+ |.+-|..+...+...|+.+..+.. ..+-..+. ++..
T Consensus 54 ~v~~t~g~t~a~~~~~~~~~~----d~vl~~~--~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~ 127 (353)
T 2yrr_A 54 VAALAGSGSLGMEAGLANLDR----GPVLVLV--NGAFSQRVAEMAALHGLDPEVLDFPPGEPVDPEAVARALKRRRYRM 127 (353)
T ss_dssp EEEESSCHHHHHHHHHHTCSC----CCEEEEE--CSHHHHHHHHHHHHTTCCEEEEECCTTSCCCHHHHHHHHHHSCCSE
T ss_pred eEEEcCCcHHHHHHHHHHhcC----CcEEEEc--CCCchHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHHhCCCCE
Confidence 466666666677555544422 2466553 334444334445668998887752 12333333 3444
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 526 VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
|++ ..--...|.+.. --.++-+|++|++.+++
T Consensus 128 v~~-~~~~nptG~~~~---~~~i~~l~~~~~~~li~ 159 (353)
T 2yrr_A 128 VAL-VHGETSTGVLNP---AEAIGALAKEAGALFFL 159 (353)
T ss_dssp EEE-ESEETTTTEECC---HHHHHHHHHHHTCEEEE
T ss_pred EEE-EccCCCcceecC---HHHHHHHHHHcCCeEEE
Confidence 544 333334466554 34677788999987665
No 172
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=43.65 E-value=1.4e+02 Score=30.37 Aligned_cols=104 Identities=13% Similarity=0.043 Sum_probs=53.1
Q ss_pred CCCEEE--EeCChHHHHHHHHH--HHHcCC---eeEEEEeCCCCCchHHHHHHHHHhCCCC-EEEEcc----------ch
Q 006256 454 DGDVLL--TYGSSSAVEMILQH--AHELGK---QFRVVIVDSRPKHEGKLLLRRLVRKGLS-CTYTHI----------NA 515 (653)
Q Consensus 454 dGdvIL--T~g~Ss~Ve~vL~~--A~e~gk---~f~ViV~ESRP~~EG~~La~eL~~~GI~-vT~I~D----------sA 515 (653)
...+++ |.|.+.+++.+++- ....|+ .-+|++.+ |.+.|... .+...|++ +..+.. ..
T Consensus 97 ~~~v~~~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~--p~y~~~~~--~~~~~g~~~~~~~~~~~~~~~~~d~~~ 172 (412)
T 1ajs_A 97 EKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSS--PTWENHNG--VFTTAGFKDIRSYRYWDTEKRGLDLQG 172 (412)
T ss_dssp TTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEE--SCCTHHHH--HHHHTTCSCEEEEECEETTTTEECHHH
T ss_pred CCcEEEEECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcC--CCcHHHHH--HHHHcCCceeEEEeeecCCCCccCHHH
Confidence 456777 88877787666432 223341 03566553 66666443 34456887 766642 12
Q ss_pred HHHHhhh---ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 516 ISYIIHE---VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 516 v~~iM~~---Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
+-..+.+ -+++++=+.---..|.+++.-=--.++-+|+.|++.+++
T Consensus 173 l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 221 (412)
T 1ajs_A 173 FLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFF 221 (412)
T ss_dssp HHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 3333332 123332232223334433322122577788899987665
No 173
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=43.58 E-value=1.1e+02 Score=30.74 Aligned_cols=101 Identities=16% Similarity=0.096 Sum_probs=51.7
Q ss_pred CCEEE--EeCChHHHHHHHHHHHH--cCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc----------chHHHHh
Q 006256 455 GDVLL--TYGSSSAVEMILQHAHE--LGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI----------NAISYII 520 (653)
Q Consensus 455 GdvIL--T~g~Ss~Ve~vL~~A~e--~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D----------sAv~~iM 520 (653)
..+++ |.|.+.+++.+++.+.. .|. +|++. .|.+.|.... +...|..+..+.. ..+-..+
T Consensus 90 ~~v~~~~~~g~~~a~~~~~~~~~~~~~gd--~vl~~--~p~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l 163 (394)
T 2ay1_A 90 ETTATLATVGGTGALRQALELARMANPDL--RVFVS--DPTWPNHVSI--MNFMGLPVQTYRYFDAETRGVDFEGMKADL 163 (394)
T ss_dssp GGEEEEEEEHHHHHHHHHHHHHHHHCTTC--CEEEE--ESCCHHHHHH--HHHHTCCEEEEECEETTTTEECHHHHHHHH
T ss_pred ccEEEEecCCchhHHHHHHHHHHhcCCCC--EEEEc--CCCChhHHHH--HHHcCCceEEEecccccCCccCHHHHHHHH
Confidence 45666 77777777666655443 343 45554 3667665433 3345777766642 1233333
Q ss_pred hh---ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 521 HE---VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 521 ~~---Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
.+ .+++++=..---..|.++..-=-..++-+|++|++.+++
T Consensus 164 ~~~~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~ 207 (394)
T 2ay1_A 164 AAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLI 207 (394)
T ss_dssp HTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 32 234444222222234333221122466678888887665
No 174
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=43.51 E-value=1.9e+02 Score=26.24 Aligned_cols=42 Identities=7% Similarity=-0.046 Sum_probs=31.9
Q ss_pred CCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEE
Q 006256 487 DSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFL 528 (653)
Q Consensus 487 ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~Vll 528 (653)
-|+--.+=.++++.+.+.|+++..|+++.-+.+-+.+|.+|.
T Consensus 119 ~sG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~L~~~ad~~l~ 160 (188)
T 1tk9_A 119 TSGKSPNVLEALKKAKELNMLCLGLSGKGGGMMNKLCDHNLV 160 (188)
T ss_dssp SSSCCHHHHHHHHHHHHTTCEEEEEEEGGGTTHHHHCSEEEE
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEeCCCCcchHHcCCEEEE
Confidence 333334456667888999999999999887777778998874
No 175
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=42.44 E-value=65 Score=31.98 Aligned_cols=97 Identities=18% Similarity=0.266 Sum_probs=51.0
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc--------chHHHHhhhccE
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIHEVTR 525 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D--------sAv~~iM~~Vd~ 525 (653)
...+++|-|.+.++..+++.+ -+|++.+ |.+.+... .+...|+.+..+.. ..+-..+.+...
T Consensus 78 ~~~i~~~~g~t~al~~~~~~~------d~vi~~~--~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 147 (361)
T 3ftb_A 78 DIGIVLGNGASEIIELSISLF------EKILIIV--PSYAEYEI--NAKKHGVSVVFSYLDENMCIDYEDIISKIDDVDS 147 (361)
T ss_dssp SCEEEEESSHHHHHHHHHTTC------SEEEEEE--SCCTHHHH--HHHHTTCEEEEEECCTTSCCCHHHHHHHTTTCSE
T ss_pred cceEEEcCCHHHHHHHHHHHc------CcEEEec--CChHHHHH--HHHHcCCeEEEeecCcccCCCHHHHHHhccCCCE
Confidence 345666666666776555443 3555543 55655433 34456888888752 133344444233
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 526 VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
|++ ..---..|.++..---..++-+|+.|++.+++
T Consensus 148 v~i-~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 182 (361)
T 3ftb_A 148 VII-GNPNNPNGGLINKEKFIHVLKLAEEKKKTIII 182 (361)
T ss_dssp EEE-ETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred EEE-eCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEE
Confidence 322 11111223333322234466778899998776
No 176
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=42.37 E-value=35 Score=32.68 Aligned_cols=90 Identities=11% Similarity=0.035 Sum_probs=52.5
Q ss_pred CCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHH-----hhhccEEEEc
Q 006256 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYI-----IHEVTRVFLG 529 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~i-----M~~Vd~VllG 529 (653)
...|+..|++..-..+.+.+.+. .+ |+++|..|.. +.++. .|+.+.+ -|..-... +.++|.||+.
T Consensus 9 ~~~viI~G~G~~G~~la~~L~~~--g~-v~vid~~~~~-----~~~~~-~~~~~i~-gd~~~~~~l~~a~i~~ad~vi~~ 78 (234)
T 2aef_A 9 SRHVVICGWSESTLECLRELRGS--EV-FVLAEDENVR-----KKVLR-SGANFVH-GDPTRVSDLEKANVRGARAVIVD 78 (234)
T ss_dssp -CEEEEESCCHHHHHHHHHSTTS--EE-EEEESCGGGH-----HHHHH-TTCEEEE-SCTTCHHHHHHTTCTTCSEEEEC
T ss_pred CCEEEEECCChHHHHHHHHHHhC--Ce-EEEEECCHHH-----HHHHh-cCCeEEE-cCCCCHHHHHhcCcchhcEEEEc
Confidence 45788999987665555555443 45 8888876542 34445 6766543 23221122 4467777764
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCCeeeec
Q 006256 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (653)
Q Consensus 530 AdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~a 563 (653)
.+ +..-...+++.|+.++....+++
T Consensus 79 ~~---------~d~~n~~~~~~a~~~~~~~~iia 103 (234)
T 2aef_A 79 LE---------SDSETIHCILGIRKIDESVRIIA 103 (234)
T ss_dssp CS---------CHHHHHHHHHHHHHHCSSSEEEE
T ss_pred CC---------CcHHHHHHHHHHHHHCCCCeEEE
Confidence 32 22345678889999887544443
No 177
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=42.09 E-value=1.1e+02 Score=27.15 Aligned_cols=97 Identities=11% Similarity=0.160 Sum_probs=52.2
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc--cch-HHHH-hhhccEEEEcce
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH--INA-ISYI-IHEVTRVFLGAS 531 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~--DsA-v~~i-M~~Vd~VllGAd 531 (653)
..|+..|++..=..+.+.+.+.| +.|+++|..|.. -.+.+.++...|+.+.+-. |.. +... +.++|.||+..+
T Consensus 4 ~~vlI~G~G~vG~~la~~L~~~g--~~V~vid~~~~~-~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~ 80 (153)
T 1id1_A 4 DHFIVCGHSILAINTILQLNQRG--QNVTVISNLPED-DIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSD 80 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTT--CCEEEEECCCHH-HHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSS
T ss_pred CcEEEECCCHHHHHHHHHHHHCC--CCEEEEECCChH-HHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecC
Confidence 45777898876666666666655 467777765421 1112233345677654432 111 2222 456777776543
Q ss_pred eEecCCCeecccchHHHHHHHhhC-C-CCeeeecc
Q 006256 532 SVLSNGTVCSRVGTACVAMVAYGF-H-IPVLVCCE 564 (653)
Q Consensus 532 aIlaNG~V~NKiGT~~lAl~Ak~~-~-VPVyV~ae 564 (653)
. ..-...+++.|+.. + ..+++.+.
T Consensus 81 ~---------d~~n~~~~~~a~~~~~~~~ii~~~~ 106 (153)
T 1id1_A 81 N---------DADNAFVVLSAKDMSSDVKTVLAVS 106 (153)
T ss_dssp C---------HHHHHHHHHHHHHHTSSSCEEEECS
T ss_pred C---------hHHHHHHHHHHHHHCCCCEEEEEEC
Confidence 2 12235677788876 4 34444443
No 178
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=41.88 E-value=1.4e+02 Score=25.89 Aligned_cols=59 Identities=15% Similarity=0.159 Sum_probs=34.6
Q ss_pred HHHhCCCC-EEEE--c-cchHHHHh------hhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeee
Q 006256 500 RLVRKGLS-CTYT--H-INAISYII------HEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (653)
Q Consensus 500 eL~~~GI~-vT~I--~-DsAv~~iM------~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~ 562 (653)
.+.+.|++ ++.. . .+..-.++ .++|+|++|++.--.-+ --.|+..-.+ .++..+||+|+
T Consensus 87 ~~~~~g~~~~~~~v~~~g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~---~~~Gs~~~~v-l~~a~~PVlvV 155 (156)
T 3fg9_A 87 LAEQRGVNQVEPLVYEGGDVDDVILEQVIPEFKPDLLVTGADTEFPHS---KIAGAIGPRL-ARKAPISVIVV 155 (156)
T ss_dssp HHHHHTCSSEEEEEEECSCHHHHHHHTHHHHHCCSEEEEETTCCCTTS---SSCSCHHHHH-HHHCSSEEEEE
T ss_pred HHHHcCCCceEEEEEeCCCHHHHHHHHHHHhcCCCEEEECCCCCCccc---eeecchHHHH-HHhCCCCEEEe
Confidence 35567884 5443 2 22222222 25799999998632221 2467765444 56678999986
No 179
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}
Probab=41.78 E-value=36 Score=33.19 Aligned_cols=102 Identities=9% Similarity=0.004 Sum_probs=54.4
Q ss_pred EEEEeCChHHHHHHH-HHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc--c-chHHHHhhhccEEEEccee
Q 006256 457 VLLTYGSSSAVEMIL-QHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH--I-NAISYIIHEVTRVFLGASS 532 (653)
Q Consensus 457 vILT~g~Ss~Ve~vL-~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~--D-sAv~~iM~~Vd~VllGAda 532 (653)
+||..|-+..+...| +.+.+. ...+|+++.-+|.. +..|...|+.+.... | ..+..++..+|.||.-|-.
T Consensus 2 ~ilVtGatG~iG~~l~~~L~~~-~g~~V~~~~R~~~~-----~~~~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~ 75 (289)
T 3e48_A 2 NIMLTGATGHLGTHITNQAIAN-HIDHFHIGVRNVEK-----VPDDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSI 75 (289)
T ss_dssp CEEEETTTSHHHHHHHHHHHHT-TCTTEEEEESSGGG-----SCGGGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred EEEEEcCCchHHHHHHHHHhhC-CCCcEEEEECCHHH-----HHHhhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCC
Confidence 467777655444333 333333 13445554333321 122344565544332 2 3455666677777664422
Q ss_pred EecCCCeecccchHHHHHHHhhCCCCeeeecccc
Q 006256 533 VLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (653)
Q Consensus 533 IlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~aety 566 (653)
. +..-.|-.|+..+.-+|+..++.-+|...+|
T Consensus 76 ~--~~~~~~~~~~~~l~~aa~~~gv~~iv~~Ss~ 107 (289)
T 3e48_A 76 I--HPSFKRIPEVENLVYAAKQSGVAHIIFIGYY 107 (289)
T ss_dssp C--CSHHHHHHHHHHHHHHHHHTTCCEEEEEEES
T ss_pred C--ccchhhHHHHHHHHHHHHHcCCCEEEEEccc
Confidence 1 1112345778888889999998877776664
No 180
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=41.71 E-value=1.5e+02 Score=29.02 Aligned_cols=62 Identities=10% Similarity=0.007 Sum_probs=36.2
Q ss_pred HHHHhCCCC---EEEEccchHHHHhh-----hccEEEEcceeEecCCCeec-ccchHHHHHHHhhCCCCeeeecc
Q 006256 499 RRLVRKGLS---CTYTHINAISYIIH-----EVTRVFLGASSVLSNGTVCS-RVGTACVAMVAYGFHIPVLVCCE 564 (653)
Q Consensus 499 ~eL~~~GI~---vT~I~DsAv~~iM~-----~Vd~VllGAdaIlaNG~V~N-KiGT~~lAl~Ak~~~VPVyV~ae 564 (653)
..+.+.|++ +.+...+..-.++. ++|++++|+.. .|.+-. -.|+..-. +.++..+||+|+=+
T Consensus 235 ~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dLiV~G~~g---~~~~~~~~~Gsv~~~-vl~~~~~pVLvv~~ 305 (319)
T 3olq_A 235 ELRQKFSIPEEKTHVKEGLPEQVIPQVCEELNAGIVVLGILG---RTGLSAAFLGNTAEQ-LIDHIKCDLLAIKP 305 (319)
T ss_dssp HHHHHTTCCGGGEEEEESCHHHHHHHHHHHTTEEEEEEECCS---CCSTHHHHHHHHHHH-HHTTCCSEEEEECC
T ss_pred HHHHHhCCCcccEEEecCCcHHHHHHHHHHhCCCEEEEeccC---ccCCccccccHHHHH-HHhhCCCCEEEECC
Confidence 344567774 44555444444443 68999999874 222221 23544333 44667899999854
No 181
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=41.17 E-value=32 Score=32.83 Aligned_cols=55 Identities=18% Similarity=0.178 Sum_probs=36.1
Q ss_pred EEEeCCh-HHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc
Q 006256 458 LLTYGSS-SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI 513 (653)
Q Consensus 458 ILT~g~S-s~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D 513 (653)
|.+|..+ .-|...|..|+++|...+|++....-...+ .....|.+.||++.+...
T Consensus 64 i~~y~~~~~~i~~aL~~aa~rGV~Vrii~D~~~~~~~~-~~~~~l~~~gi~v~~~~~ 119 (196)
T 4ggj_A 64 LCLFAFSSPQLGRAVQLLHQRGVRVRVITDCDYMALNG-SQIGLLRKAGIQVRHDQD 119 (196)
T ss_dssp EEESCBCCHHHHHHHHHHHHTTCEEEEEESSCCC---C-CHHHHHHHTTCEEEECCS
T ss_pred EEEEEeCCHHHHHHHHHHHHcCCcEEEEEecccccccH-HHHHHHHhcCCCcccccc
Confidence 5566543 345577888999999999988543332222 234678999999876543
No 182
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=40.87 E-value=2.8e+02 Score=27.85 Aligned_cols=72 Identities=11% Similarity=0.030 Sum_probs=39.0
Q ss_pred EEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc---hHHHHhh-----hccEEEEcceeEecCCCeecccchHHHHHHHh
Q 006256 482 RVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---AISYIIH-----EVTRVFLGASSVLSNGTVCSRVGTACVAMVAY 553 (653)
Q Consensus 482 ~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds---Av~~iM~-----~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak 553 (653)
.|++.+ |.+.+.... +...|+.+..+..+ .+-.++. ++.+|++ ...-...|.+.. --.++-+|+
T Consensus 134 ~Vl~~~--~~~~~~~~~--~~~~g~~~~~v~~~d~~~le~~l~~~~~~~~~~v~~-~~~~nptG~~~~---l~~i~~l~~ 205 (401)
T 2bwn_A 134 IIYSDS--LNHASMIEG--IKRNAGPKRIFRHNDVAHLRELIAADDPAAPKLIAF-ESVYSMDGDFGP---IKEICDIAE 205 (401)
T ss_dssp EEEEET--TCCHHHHHH--HHHSCCCEEEECTTCHHHHHHHHHHSCTTSCEEEEE-ESBCTTTCCBCC---HHHHHHHHH
T ss_pred EEEECc--hhhHHHHHH--HHHcCCeEEEEcCCCHHHHHHHHHhhccCCceEEEE-ecCcCCCCCcCC---HHHHHHHHH
Confidence 555543 566554433 34478888888632 3344444 2233332 222223355544 356777899
Q ss_pred hCCCCeee
Q 006256 554 GFHIPVLV 561 (653)
Q Consensus 554 ~~~VPVyV 561 (653)
+|++.++|
T Consensus 206 ~~~~~li~ 213 (401)
T 2bwn_A 206 EFGALTYI 213 (401)
T ss_dssp HHTCEEEE
T ss_pred HcCCEEEE
Confidence 99987665
No 183
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=40.72 E-value=43 Score=33.01 Aligned_cols=73 Identities=19% Similarity=0.110 Sum_probs=43.7
Q ss_pred EEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc----------cchHHHHhh--hccE
Q 006256 458 LLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH----------INAISYIIH--EVTR 525 (653)
Q Consensus 458 ILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~----------DsAv~~iM~--~Vd~ 525 (653)
||.-|+++.++.+|... +....++|..+=|.|-..+.+ .-.+.|||+..+. |..+...+. ++|.
T Consensus 17 vl~SG~gsnl~all~~~-~~~~~~eI~~Vis~~~a~~~~---~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dl 92 (215)
T 3da8_A 17 VLASGTGSLLRSLLDAA-VGDYPARVVAVGVDRECRAAE---IAAEASVPVFTVRLADHPSRDAWDVAITAATAAHEPDL 92 (215)
T ss_dssp EEESSCCHHHHHHHHHS-STTCSEEEEEEEESSCCHHHH---HHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHTTCCSE
T ss_pred EEEeCChHHHHHHHHHH-hccCCCeEEEEEeCCchHHHH---HHHHcCCCEEEeCcccccchhhhhHHHHHHHHhhCCCE
Confidence 45558899987766554 323345665555554444433 3456799999885 234444554 5888
Q ss_pred EEEcc-eeEe
Q 006256 526 VFLGA-SSVL 534 (653)
Q Consensus 526 VllGA-daIl 534 (653)
+++-+ -.|+
T Consensus 93 ivlagy~~iL 102 (215)
T 3da8_A 93 VVSAGFMRIL 102 (215)
T ss_dssp EEEEECCSCC
T ss_pred EEEcCchhhC
Confidence 88744 3444
No 184
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=40.65 E-value=1.4e+02 Score=30.75 Aligned_cols=100 Identities=16% Similarity=0.093 Sum_probs=52.2
Q ss_pred CEEEEeCChHHHHHHHH--HHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc----c------hHHHHhh--
Q 006256 456 DVLLTYGSSSAVEMILQ--HAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI----N------AISYIIH-- 521 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~--~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D----s------Av~~iM~-- 521 (653)
.+++|.|.+.++..+++ .....| -+|++.+ |.+.+.. ..+...|..+..+.- + .+-..+.
T Consensus 119 ~i~~t~G~t~al~~~~~~~~~~~~g--d~Vlv~~--p~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 192 (420)
T 4f4e_A 119 VTAQALGGTGALKIGADFLRTLNPK--AKVAISD--PSWENHR--ALFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNGY 192 (420)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHCTT--CCEEEEE--SCCHHHH--HHHHHTTCCEEEEECEETTTTEECHHHHHHHHTTC
T ss_pred EEEECCccHHHHHHHHHHHHHhCCC--CEEEEeC--CCcHhHH--HHHHHcCCeEEEeeeeccccCccCHHHHHHHHHhC
Confidence 57888888777766533 223333 3455543 6666653 334456877777642 1 2223333
Q ss_pred -hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 522 -~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
.-+++++=...--..|.+++.---..++-+|++|++.+++
T Consensus 193 ~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~ 233 (420)
T 4f4e_A 193 EPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFL 233 (420)
T ss_dssp CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEE
Confidence 1223333222222234444433334677788889887665
No 185
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=40.26 E-value=2.1e+02 Score=27.04 Aligned_cols=37 Identities=0% Similarity=-0.255 Sum_probs=26.4
Q ss_pred chHHHHHHHHHhCCCCEEEEccchHHHHhhhc---cEEEE
Q 006256 492 HEGKLLLRRLVRKGLSCTYTHINAISYIIHEV---TRVFL 528 (653)
Q Consensus 492 ~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~V---d~Vll 528 (653)
.+=.++++.+.+.|+++..|+++.-+.+-+.+ |.+|.
T Consensus 128 ~~~~~~~~~ak~~g~~vi~iT~~~~s~la~~a~~~d~~l~ 167 (201)
T 3trj_A 128 ENILSAVEEAHDLEMKVIALTGGSGGALQNMYNTDDIELR 167 (201)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEETTCCGGGGTCCTTCEEEE
T ss_pred HHHHHHHHHHHHCCCcEEEEECCCCCHHHHhhccCCEEEE
Confidence 34456667788888888888877666666667 77764
No 186
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=40.17 E-value=69 Score=33.18 Aligned_cols=97 Identities=16% Similarity=0.122 Sum_probs=52.9
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHH--HHHhCCCCEEEEccc--hHHHHhh-hccEEEEcc
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLR--RLVRKGLSCTYTHIN--AISYIIH-EVTRVFLGA 530 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~--eL~~~GI~vT~I~Ds--Av~~iM~-~Vd~VllGA 530 (653)
+.|++-+.+.++..+|. ..+.| -+|++.+ |.+.|..-.. .+...|+.++++... .+-..+. ++.+|++ .
T Consensus 72 ~~i~~~sGt~a~~~al~-~~~~g--d~Vi~~~--~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~l~~~i~~~t~lv~~-~ 145 (393)
T 1n8p_A 72 YGLAFSSGSATTATILQ-SLPQG--SHAVSIG--DVYGGTHRYFTKVANAHGVETSFTNDLLNDLPQLIKENTKLVWI-E 145 (393)
T ss_dssp EEEEESCHHHHHHHHHH-TSCSS--CEEEEES--SCCHHHHHHHHHTSTTTCSCCEEESSHHHHHHHHSCSSEEEEEE-C
T ss_pred cEEEECChHHHHHHHHH-HcCCC--CEEEEeC--CCchHHHHHHHHHHHHcCcEEEEeCCChHHHHHhcccCceEEEE-E
Confidence 45555444556666666 43333 3666654 6776643332 456679999998632 2333332 2334443 2
Q ss_pred eeEecCCCeecccchHHHHHHHhhC----CCCeee
Q 006256 531 SSVLSNGTVCSRVGTACVAMVAYGF----HIPVLV 561 (653)
Q Consensus 531 daIlaNG~V~NKiGT~~lAl~Ak~~----~VPVyV 561 (653)
..--..|.+.. --.|+-+|++| +++|+|
T Consensus 146 ~~~nptG~~~~---l~~i~~la~~~~~~~~~~liv 177 (393)
T 1n8p_A 146 TPTNPTLKVTD---IQKVADLIKKHAAGQDVILVV 177 (393)
T ss_dssp SSCTTTCCCCC---HHHHHHHHHHHTTTTTCEEEE
T ss_pred CCCCCcceecC---HHHHHHHHHHhCCCCCCEEEE
Confidence 11123344442 34677788999 887776
No 187
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*
Probab=40.14 E-value=52 Score=32.83 Aligned_cols=99 Identities=19% Similarity=0.108 Sum_probs=55.2
Q ss_pred CCCEEEEeCChHHHHHHH-HHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc--c-chHHHHhhhccEEEEc
Q 006256 454 DGDVLLTYGSSSAVEMIL-QHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH--I-NAISYIIHEVTRVFLG 529 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL-~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~--D-sAv~~iM~~Vd~VllG 529 (653)
.+.+||..|-+.-|..-| +.+.++| ++|+++.-++.. .++.+.... | ..+..++..+|.||--
T Consensus 18 ~~~~vlVtGatG~iG~~l~~~L~~~G--~~V~~~~r~~~~-----------~~~~~~~~Dl~d~~~~~~~~~~~d~vih~ 84 (347)
T 4id9_A 18 GSHMILVTGSAGRVGRAVVAALRTQG--RTVRGFDLRPSG-----------TGGEEVVGSLEDGQALSDAIMGVSAVLHL 84 (347)
T ss_dssp ---CEEEETTTSHHHHHHHHHHHHTT--CCEEEEESSCCS-----------SCCSEEESCTTCHHHHHHHHTTCSEEEEC
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCC--CEEEEEeCCCCC-----------CCccEEecCcCCHHHHHHHHhCCCEEEEC
Confidence 356788888765554333 3444445 567776555432 344443321 2 2455666677777755
Q ss_pred ceeEecCCC------eecccchHHHHHHHhhCCCCeeeeccc
Q 006256 530 ASSVLSNGT------VCSRVGTACVAMVAYGFHIPVLVCCEA 565 (653)
Q Consensus 530 AdaIlaNG~------V~NKiGT~~lAl~Ak~~~VPVyV~aet 565 (653)
|-....+.. -.|-.||..+.-+|+.+++.-+|.+.+
T Consensus 85 A~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~V~~SS 126 (347)
T 4id9_A 85 GAFMSWAPADRDRMFAVNVEGTRRLLDAASAAGVRRFVFASS 126 (347)
T ss_dssp CCCCCSSGGGHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred CcccCcchhhHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECC
Confidence 432211111 136678999999999999866665544
No 188
>4eu9_A Succinyl-COA:acetate coenzyme A transferase; HET: COA; 1.48A {Acetobacter aceti} PDB: 4eua_A* 4eu3_A* 4eu4_A* 4eu5_A* 4eu6_A* 4eu7_A* 4eu8_A* 4eub_A* 4euc_A* 4eud_A*
Probab=39.92 E-value=1.2e+02 Score=33.51 Aligned_cols=96 Identities=21% Similarity=0.386 Sum_probs=57.3
Q ss_pred HHHHHHhccCCCEEEEeCCh-----HHHHHHH-HHH---HHcCCe--eEEEEeC-CCCCchHH----------------H
Q 006256 445 VKHAVTKIRDGDVLLTYGSS-----SAVEMIL-QHA---HELGKQ--FRVVIVD-SRPKHEGK----------------L 496 (653)
Q Consensus 445 a~~a~~~I~dGdvILT~g~S-----s~Ve~vL-~~A---~e~gk~--f~ViV~E-SRP~~EG~----------------~ 496 (653)
++.|+++|++||+|.+.|+. .++-..| +++ +..+.. +.++... ..|..++. .
T Consensus 17 aeEAv~~IkdGd~V~~~Gf~~~G~P~~L~~ALa~R~~~~~~~g~~~~i~l~~~~~~~~~~~~~l~~~g~i~~~~~~~~~~ 96 (514)
T 4eu9_A 17 AETASELIKHGDVVGTSGFTGAGYPKEVPKALAQRMEAAHDRGEKYQISLITGASTGPQLDGELAKANGVYFRSPFNTDA 96 (514)
T ss_dssp HHHHHTTCCTTCEEEECCBTTBSCCCHHHHHHHHHHHHHHHTTCCCCEEEECSSCCCTTTHHHHHHTTCEEEEESCCCCH
T ss_pred HHHHHHhCCCCCEEEECCCCCCcCHHHHHHHHHHHHHHhhcCCcceeEEEEEecCcCcccccccccCCCEEEEEecCCCH
Confidence 34677899999999998652 2332333 222 234444 4444332 23444332 1
Q ss_pred HHHHHHhCCCCEEEE--ccchHHHHhh-----hccEEEEcceeEecCCCeec
Q 006256 497 LLRRLVRKGLSCTYT--HINAISYIIH-----EVTRVFLGASSVLSNGTVCS 541 (653)
Q Consensus 497 La~eL~~~GI~vT~I--~DsAv~~iM~-----~Vd~VllGAdaIlaNG~V~N 541 (653)
..+++.+.| .+.|+ ..+.++..+. .+|..|+-+..+-.+|.+.-
T Consensus 97 ~~R~~i~~G-~~~y~p~~ls~~~~~~~~~~~~~iDVAlI~as~~De~Gnis~ 147 (514)
T 4eu9_A 97 TMRNRINAG-ETEYFDNHLGQVAGRAVQGNYGKFNIALVEATAITEDGGIVP 147 (514)
T ss_dssp HHHHHHHTT-SSEECCCCGGGHHHHHHHTTTCCCCEEEEEEEEECTTCCEEE
T ss_pred HHHHHHHcC-CeeEECccccchHHHHHhccCCCceEEEEEEEcCCCCceEEe
Confidence 235666666 34444 4566664443 58999999999999999853
No 189
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=39.89 E-value=8.5 Score=40.21 Aligned_cols=75 Identities=16% Similarity=0.244 Sum_probs=43.7
Q ss_pred hccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcc
Q 006256 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (653)
Q Consensus 451 ~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGA 530 (653)
.+..|.+|+..|.+..-..+++.|++.| ++|++++..|...+..++ +.-+...|....++-.+.+++|.|..+-
T Consensus 10 ~~~~~k~IlIlG~G~~g~~la~aa~~~G--~~vi~~d~~~~~~~~~~a----d~~~~~~~~d~~~l~~~~~~~dvI~~~~ 83 (389)
T 3q2o_A 10 IILPGKTIGIIGGGQLGRMMALAAKEMG--YKIAVLDPTKNSPCAQVA----DIEIVASYDDLKAIQHLAEISDVVTYEF 83 (389)
T ss_dssp CCCTTSEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSTTCTTTTTC----SEEEECCTTCHHHHHHHHHTCSEEEESC
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEeCCCCCchHHhC----CceEecCcCCHHHHHHHHHhCCEeeecc
Confidence 3457889999999987667788887655 577888776654333222 1100001111123445556677776664
Q ss_pred e
Q 006256 531 S 531 (653)
Q Consensus 531 d 531 (653)
+
T Consensus 84 e 84 (389)
T 3q2o_A 84 E 84 (389)
T ss_dssp C
T ss_pred c
Confidence 4
No 190
>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*
Probab=39.89 E-value=1.4e+02 Score=29.69 Aligned_cols=108 Identities=15% Similarity=0.099 Sum_probs=52.7
Q ss_pred CEEEEeCChHHHHHH-HHHHHHcCCeeEEEEeCCCCCc-----hHHHHHHHHH---hCCCCEEEE--cc-chHHHHhh--
Q 006256 456 DVLLTYGSSSAVEMI-LQHAHELGKQFRVVIVDSRPKH-----EGKLLLRRLV---RKGLSCTYT--HI-NAISYIIH-- 521 (653)
Q Consensus 456 dvILT~g~Ss~Ve~v-L~~A~e~gk~f~ViV~ESRP~~-----EG~~La~eL~---~~GI~vT~I--~D-sAv~~iM~-- 521 (653)
.+||..|-+..|..- ++.+.++| .+|++++-.+.. +....+.+|. ..++.+... .| .++..++.
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 80 (348)
T 1ek6_A 3 EKVLVTGGAGYIGSHTVLELLEAG--YLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKY 80 (348)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTT--CCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC--CEEEEEecCCcccccccccHHHHHHHHhccCCceEEEECCCCCHHHHHHHHHhc
Confidence 467888766555433 34445555 456666422211 0112223333 234433222 12 24555565
Q ss_pred hccEEEEcceeEecC--------CCeecccchHHHHHHHhhCCCCeeeeccc
Q 006256 522 EVTRVFLGASSVLSN--------GTVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (653)
Q Consensus 522 ~Vd~VllGAdaIlaN--------G~V~NKiGT~~lAl~Ak~~~VPVyV~aet 565 (653)
.+|.||--|-..... ---.|-.||..+.-+|+.+++.-+|.+.+
T Consensus 81 ~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS 132 (348)
T 1ek6_A 81 SFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSS 132 (348)
T ss_dssp CEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCCCEEEEECc
Confidence 355555433211000 00125678999998999899876665544
No 191
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=39.79 E-value=96 Score=25.99 Aligned_cols=77 Identities=18% Similarity=0.170 Sum_probs=44.3
Q ss_pred CCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc--hHHHHhh-hccEEEEcceeEecCCCeecccchHHHHHHHhh
Q 006256 478 GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN--AISYIIH-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG 554 (653)
Q Consensus 478 gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds--Av~~iM~-~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~ 554 (653)
....+|+|+|..+.. ...+...|...|+.|....+. ++..+-. ..|.|| +.+. -|-..+..+-+.
T Consensus 16 ~~~~~ilivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi------~~~~-----~g~~~~~~l~~~ 83 (137)
T 2pln_A 16 RGSMRVLLIEKNSVL-GGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVM------VSDK-----NALSFVSRIKEK 83 (137)
T ss_dssp TTCSEEEEECSCHHH-HHHHHHHHHHTTCEEEEESCHHHHHHHHHHSCCSEEE------ECST-----THHHHHHHHHHH
T ss_pred CCCCeEEEEeCCHHH-HHHHHHHHHHcCcEEEEeCCHHHHHHHHHcCCCCEEE------EcCc-----cHHHHHHHHHhc
Confidence 456788888876643 233456677788887765543 2222222 467777 3222 243334444333
Q ss_pred C-CCCeeeecccc
Q 006256 555 F-HIPVLVCCEAY 566 (653)
Q Consensus 555 ~-~VPVyV~aety 566 (653)
. ++|+++++...
T Consensus 84 ~~~~~ii~ls~~~ 96 (137)
T 2pln_A 84 HSSIVVLVSSDNP 96 (137)
T ss_dssp STTSEEEEEESSC
T ss_pred CCCccEEEEeCCC
Confidence 5 89999987643
No 192
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=39.72 E-value=1.8e+02 Score=28.90 Aligned_cols=99 Identities=17% Similarity=0.313 Sum_probs=55.3
Q ss_pred CCEEEEeCChHHHHHHHHHH-HHcCCeeEEEEeCCCCCchHHHHH-HH-HHhCCCCEEEEccc-------hHHHHhh---
Q 006256 455 GDVLLTYGSSSAVEMILQHA-HELGKQFRVVIVDSRPKHEGKLLL-RR-LVRKGLSCTYTHIN-------AISYIIH--- 521 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A-~e~gk~f~ViV~ESRP~~EG~~La-~e-L~~~GI~vT~I~Ds-------Av~~iM~--- 521 (653)
..+++|.|.+.++..+++.+ .+.| -+|++. .|.+.+.... .. ....|+.+..+... .+..+-.
T Consensus 77 ~~v~~~~g~t~a~~~~~~~~~~~~g--d~vl~~--~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~ 152 (390)
T 1elu_A 77 NTITITDNVTTGCDIVLWGLDWHQG--DEILLT--DCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLG 152 (390)
T ss_dssp GGEEEESSHHHHHHHHHHHSCCCTT--CEEEEE--TTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCC
T ss_pred HHEEEeCChHHHHHHHHhCCCCCCC--CEEEEe--cCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcC
Confidence 36788878777887666655 3333 356654 4666665543 23 34468888887532 1222222
Q ss_pred -hccEEEEcceeEecCCCeecccchHHHHHHHh----hCCCCeee
Q 006256 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAY----GFHIPVLV 561 (653)
Q Consensus 522 -~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak----~~~VPVyV 561 (653)
++..|++ ..--...|.++. --.++-+|+ .|++.+++
T Consensus 153 ~~~~~v~~-~~~~nptG~~~~---~~~i~~l~~~~~~~~~~~li~ 193 (390)
T 1elu_A 153 PKTRLVIL-SHLLWNTGQVLP---LAEIMAVCRRHQGNYPVRVLV 193 (390)
T ss_dssp TTEEEEEE-ESBCTTTCCBCC---HHHHHHHHHHCCSSSCCEEEE
T ss_pred CCceEEEE-eccccCCceecC---HHHHHHHHhhhhhhcCcEEEE
Confidence 2334433 222223455555 346777888 88887665
No 193
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=39.67 E-value=1.8e+02 Score=30.92 Aligned_cols=96 Identities=18% Similarity=0.256 Sum_probs=51.8
Q ss_pred EEEeCCh-HHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHH-HH-HHHhCCCCEEEEccch---HHHHhhhccEEEEcce
Q 006256 458 LLTYGSS-SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-LR-RLVRKGLSCTYTHINA---ISYIIHEVTRVFLGAS 531 (653)
Q Consensus 458 ILT~g~S-s~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~L-a~-eL~~~GI~vT~I~DsA---v~~iM~~Vd~VllGAd 531 (653)
.+.++++ .++..+|..+.+.| -+|++. .|.+.|..- .. .+...|+.++++...- +...+..-+++|+ .+
T Consensus 100 ~v~~~sG~~Ai~~al~al~~~G--d~Vi~~--~~~y~~~~~~~~~~~~~~G~~~~~v~~~d~~~l~~ai~~~t~~v~-~e 174 (430)
T 3ri6_A 100 VLALGSGMAAISTAILTLARAG--DSVVTT--DRLFGHTLSLFQKTLPSFGIEVRFVDVMDSLAVEHACDETTKLLF-LE 174 (430)
T ss_dssp EEEESCHHHHHHHHHHHHCCTT--CEEEEE--TTCCHHHHHHHHTHHHHTTCEEEEECTTCHHHHHHHCCTTEEEEE-EE
T ss_pred EEEECCHHHHHHHHHHHHhCCC--CEEEEc--CCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHhhCCCCeEEE-EE
Confidence 4444444 45555555443333 356554 455655443 32 5678899999996433 3333332223333 22
Q ss_pred eE-ecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 532 SV-LSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 532 aI-laNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
.. -..|.+.. --.++-+|++|+++++|
T Consensus 175 ~p~NptG~~~d---l~~i~~la~~~g~~liv 202 (430)
T 3ri6_A 175 TISNPQLQVAD---LEALSKVVHAKGIPLVV 202 (430)
T ss_dssp SSCTTTCCCCC---HHHHHHHHHTTTCCEEE
T ss_pred CCCCCCCeecC---HHHHHHHHHHcCCEEEE
Confidence 22 22344432 24677889999999886
No 194
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D
Probab=39.64 E-value=72 Score=30.79 Aligned_cols=102 Identities=10% Similarity=0.091 Sum_probs=55.4
Q ss_pred EEEEeCChHHHHHHH-HHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc--c-chHHHHhhhccEEEEccee
Q 006256 457 VLLTYGSSSAVEMIL-QHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH--I-NAISYIIHEVTRVFLGASS 532 (653)
Q Consensus 457 vILT~g~Ss~Ve~vL-~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~--D-sAv~~iM~~Vd~VllGAda 532 (653)
+||..|-+..+..-| +.+.++...++|+++.-.+.. +..|...++.+.... | ..+..++..+|.||--|-.
T Consensus 2 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~-----~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~~ 76 (287)
T 2jl1_A 2 SIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEK-----ASTLADQGVEVRHGDYNQPESLQKAFAGVSKLLFISGP 76 (287)
T ss_dssp CEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTT-----THHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred eEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHH-----HhHHhhcCCeEEEeccCCHHHHHHHHhcCCEEEEcCCC
Confidence 467777765554433 334333114567766544321 123444566543321 2 3455667778877754421
Q ss_pred EecCCCeecccchHHHHHHHhhCCCCeeeeccc
Q 006256 533 VLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (653)
Q Consensus 533 IlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~aet 565 (653)
- -+.-+|-.||..+.-+|+.+++.-+|...+
T Consensus 77 ~--~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss 107 (287)
T 2jl1_A 77 H--YDNTLLIVQHANVVKAARDAGVKHIAYTGY 107 (287)
T ss_dssp C--SCHHHHHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred C--cCchHHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 1 111236678888888888888866655444
No 195
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=39.62 E-value=1.7e+02 Score=30.23 Aligned_cols=98 Identities=9% Similarity=0.073 Sum_probs=53.7
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHH-HH-HHHhCCCCEEEEcc---chHHHHhh-hccEEEEc
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-LR-RLVRKGLSCTYTHI---NAISYIIH-EVTRVFLG 529 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~L-a~-eL~~~GI~vT~I~D---sAv~~iM~-~Vd~VllG 529 (653)
+.|++-+.+.++..++....+.| -+|++. .|.+.+... .. .+...|+.+.++.. ..+...+. ++.+|++
T Consensus 79 ~~i~~~~g~~ai~~~~~~l~~~g--d~Vl~~--~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~t~~v~l- 153 (404)
T 1e5e_A 79 ACVATSSGMGAIAATVLTILKAG--DHLISD--ECLYGCTHALFEHALTKFGIQVDFINTAIPGEVKKHMKPNTKIVYF- 153 (404)
T ss_dssp EEEEESSHHHHHHHHHHHHCCTT--CEEEEE--SCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHHCCTTEEEEEE-
T ss_pred cEEEeCChHHHHHHHHHHHhCCC--CEEEEe--CCCchhHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCCCcEEEE-
Confidence 45555555556655555443333 356654 566655433 22 36678999998863 23333333 3334443
Q ss_pred ceeEecCCCeecccchHHHHHHHhh-CCCCeee
Q 006256 530 ASSVLSNGTVCSRVGTACVAMVAYG-FHIPVLV 561 (653)
Q Consensus 530 AdaIlaNG~V~NKiGT~~lAl~Ak~-~~VPVyV 561 (653)
..---..|.+.. --.++-+|++ |++.|++
T Consensus 154 ~~p~NptG~v~~---l~~i~~la~~~~~~~li~ 183 (404)
T 1e5e_A 154 ETPANPTLKIID---MERVCKDAHSQEGVLVIA 183 (404)
T ss_dssp ESSCTTTCCCCC---HHHHHHHHHTSTTCEEEE
T ss_pred ECCCCCCCcccC---HHHHHHHHHhhcCCEEEE
Confidence 211123344442 3567778999 9988775
No 196
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=39.48 E-value=1.1e+02 Score=31.46 Aligned_cols=102 Identities=18% Similarity=0.167 Sum_probs=54.5
Q ss_pred cCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHH-hCCCCEEEEccc----------hHHHHhh
Q 006256 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLV-RKGLSCTYTHIN----------AISYIIH 521 (653)
Q Consensus 453 ~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~-~~GI~vT~I~Ds----------Av~~iM~ 521 (653)
....+++|-|.+.++..+++.+.+.| -+|++. +|.+.|... .+. ..|+.+..+... .+-..+.
T Consensus 107 ~~~~i~~~~G~~~ai~~~~~~~~~~g--d~Vl~~--~p~y~~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~ 180 (428)
T 1iay_A 107 DPERVVMAGGATGANETIIFCLADPG--DAFLVP--SPYYPAFNR--DLRWRTGVQLIPIHCESSNNFKITSKAVKEAYE 180 (428)
T ss_dssp CTTSCEEEEHHHHHHHHHHHHHCCTT--CEEEEE--SSCCTTHHH--HTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHH
T ss_pred ChhhEEEccChHHHHHHHHHHhCCCC--CeEEEc--cCCCcchHH--HHHHhcCCEEEEeecCCccCCcCCHHHHHHHHH
Confidence 34567888887778866666554333 356654 466655432 132 468887777421 1222332
Q ss_pred -------hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 522 -------EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 522 -------~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
++.+|++ +.---..|.++.+-=-..++-+|+.|++.+++
T Consensus 181 ~~~~~~~~~~~v~l-~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 226 (428)
T 1iay_A 181 NAQKSNIKVKGLIL-TNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVC 226 (428)
T ss_dssp HHHHTTCCEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEE
T ss_pred HHHhcCCceEEEEE-cCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEE
Confidence 2344444 22212235544332234466678889987765
No 197
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=39.38 E-value=2e+02 Score=29.45 Aligned_cols=92 Identities=15% Similarity=0.147 Sum_probs=55.9
Q ss_pred CCEEEEeCCh---HHHHHHHHHHHHc---CCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc-cchHHHHhhhccEEE
Q 006256 455 GDVLLTYGSS---SAVEMILQHAHEL---GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-INAISYIIHEVTRVF 527 (653)
Q Consensus 455 GdvILT~g~S---s~Ve~vL~~A~e~---gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~-DsAv~~iM~~Vd~Vl 527 (653)
..+||++|-| ..+...+.++.+. ...+.|++.-.+... ..+...+.+.++++.+.. ..-+..+|..+|+||
T Consensus 180 ~~~ilv~gGs~g~~~~~~~~~~al~~l~~~~~~~vi~~~G~~~~--~~~~~~~~~~~~~~~v~~f~~dm~~~l~~aDlvI 257 (365)
T 3s2u_A 180 RVNLLVLGGSLGAEPLNKLLPEALAQVPLEIRPAIRHQAGRQHA--EITAERYRTVAVEADVAPFISDMAAAYAWADLVI 257 (365)
T ss_dssp CCEEEECCTTTTCSHHHHHHHHHHHTSCTTTCCEEEEECCTTTH--HHHHHHHHHTTCCCEEESCCSCHHHHHHHCSEEE
T ss_pred CcEEEEECCcCCccccchhhHHHHHhcccccceEEEEecCcccc--ccccceecccccccccccchhhhhhhhccceEEE
Confidence 4578888765 2344555555442 334566655444332 244566778888888764 234677888999886
Q ss_pred EcceeEecCCCeecccchHHHHHHHhhCCCCeeee
Q 006256 528 LGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (653)
Q Consensus 528 lGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~ 562 (653)
. +.|...++- +-.+|+|++++
T Consensus 258 ~-------------raG~~Tv~E-~~a~G~P~Ili 278 (365)
T 3s2u_A 258 C-------------RAGALTVSE-LTAAGLPAFLV 278 (365)
T ss_dssp E-------------CCCHHHHHH-HHHHTCCEEEC
T ss_pred e-------------cCCcchHHH-HHHhCCCeEEe
Confidence 2 445444443 44579998865
No 198
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=39.08 E-value=60 Score=34.30 Aligned_cols=96 Identities=16% Similarity=0.128 Sum_probs=50.9
Q ss_pred CEEEEeCChH-HHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH--HHHHhCCCCEEEEccc---hHHHHhh-hccEEEE
Q 006256 456 DVLLTYGSSS-AVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL--RRLVRKGLSCTYTHIN---AISYIIH-EVTRVFL 528 (653)
Q Consensus 456 dvILT~g~Ss-~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La--~eL~~~GI~vT~I~Ds---Av~~iM~-~Vd~Vll 528 (653)
+.|++ +.++ ++..+|....+.| -+|++.+ |.+.|..-. ..|...|++++++... .+...+. +..+|++
T Consensus 99 ~~i~~-ssGt~Ai~~al~~l~~~G--d~Vi~~~--~~y~~~~~~~~~~l~~~G~~v~~v~~~d~~~le~ai~~~tklV~~ 173 (415)
T 2fq6_A 99 GCVLF-PCGAAAVANSILAFIEQG--DHVLMTN--TAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFL 173 (415)
T ss_dssp EEEEE-SSHHHHHHHHHHTTCCTT--CEEEEET--TSCHHHHHHHHHTGGGGTCEEEEECTTCGGGGGGGCCTTEEEEEE
T ss_pred eEEEe-CCHHHHHHHHHHHHhCCC--CEEEEeC--CCchHHHHHHHHHHHHcCcEEEEECCCCHHHHHHhhccCCcEEEE
Confidence 34444 4443 5544444333333 3666654 566665433 2356789999998532 2222332 2334443
Q ss_pred cceeEe-cCCCeecccchHHHHHHHhh--CCCCeee
Q 006256 529 GASSVL-SNGTVCSRVGTACVAMVAYG--FHIPVLV 561 (653)
Q Consensus 529 GAdaIl-aNG~V~NKiGT~~lAl~Ak~--~~VPVyV 561 (653)
+.+. ..|.+. . --.|+-+|++ |+++|+|
T Consensus 174 --e~~~NptG~v~-d--l~~I~~la~~~~~g~~liv 204 (415)
T 2fq6_A 174 --ESPGSITMEVH-D--VPAIVAAVRSVVPDAIIMI 204 (415)
T ss_dssp --ESSCTTTCCCC-C--HHHHHHHHHHHCTTCEEEE
T ss_pred --ECCCCCCCEee-c--HHHHHHHHHhhcCCCEEEE
Confidence 2222 224333 2 2568888999 9998876
No 199
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=39.06 E-value=1.9e+02 Score=29.06 Aligned_cols=98 Identities=14% Similarity=0.108 Sum_probs=55.8
Q ss_pred CEEEEeCC-hHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc--------chHHHHhh--hcc
Q 006256 456 DVLLTYGS-SSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIH--EVT 524 (653)
Q Consensus 456 dvILT~g~-Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D--------sAv~~iM~--~Vd 524 (653)
+.|+..+. +.++..++..+.+.| -+|++.+ |.+-|..+...+...|+.+..+.. ..+-..+. ++.
T Consensus 65 ~~v~~~~sgt~al~~~~~~~~~~g--d~Vl~~~--~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~ 140 (411)
T 3nnk_A 65 WTMLVDGTSRAGIEAILVSAIRPG--DKVLVPV--FGRFGHLLCEIARRCRAEVHTIEVPWGEVFTPDQVEDAVKRIRPR 140 (411)
T ss_dssp EEEEEESCHHHHHHHHHHHHCCTT--CEEEEEE--CSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCS
T ss_pred cEEEECCCcHHHHHHHHHHhcCCC--CEEEEec--CCchHHHHHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHhhCCCe
Confidence 33444444 456766666664333 3566654 555555555667778998888752 23344443 456
Q ss_pred EEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 525 ~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
.|++- ..=-..|.+.. + -.|+-+|++|++.+++
T Consensus 141 ~v~~~-~~~nptG~~~~-l--~~i~~l~~~~~~~li~ 173 (411)
T 3nnk_A 141 LLLTV-QGDTSTTMLQP-L--AELGEICRRYDALFYT 173 (411)
T ss_dssp EEEEE-SEETTTTEECC-C--TTHHHHHHHHTCEEEE
T ss_pred EEEEe-CCCCCcceecc-H--HHHHHHHHHcCCEEEE
Confidence 66553 22223444433 2 2577789999987776
No 200
>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}
Probab=39.00 E-value=1.2e+02 Score=33.33 Aligned_cols=112 Identities=16% Similarity=0.240 Sum_probs=67.5
Q ss_pred ccCCCEEEEeCChHHHHHHH-HHHHHcCCeeEEEEeCCCC-Cch-HHHHHHHHHhCCCCEEEE-cc----chHHHHhhh-
Q 006256 452 IRDGDVLLTYGSSSAVEMIL-QHAHELGKQFRVVIVDSRP-KHE-GKLLLRRLVRKGLSCTYT-HI----NAISYIIHE- 522 (653)
Q Consensus 452 I~dGdvILT~g~Ss~Ve~vL-~~A~e~gk~f~ViV~ESRP-~~E-G~~La~eL~~~GI~vT~I-~D----sAv~~iM~~- 522 (653)
+..+.+||..|-+.-+...| +.+.++|.. +|+++.-++ ..+ -.++..+|...|..++++ +| .++..++.+
T Consensus 256 ~~~~~~vLITGgtGgIG~~lA~~La~~G~~-~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~~ 334 (511)
T 2z5l_A 256 WQPSGTVLITGGMGAIGRRLARRLAAEGAE-RLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDVAERDALAALVTAY 334 (511)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTTCS-EEEEEESSGGGSTTHHHHHHHHHTTTCEEEEEECCSSCHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhCCCc-EEEEEecCCcccHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHhcC
Confidence 34567788888776664444 344444543 455443332 222 345668898889888876 33 356666765
Q ss_pred -ccEEEEcceeEecCCCe-------------ecccchHHHHHHHhhC-CCCeeeeccc
Q 006256 523 -VTRVFLGASSVLSNGTV-------------CSRVGTACVAMVAYGF-HIPVLVCCEA 565 (653)
Q Consensus 523 -Vd~VllGAdaIlaNG~V-------------~NKiGT~~lAl~Ak~~-~VPVyV~aet 565 (653)
+|.||--|- +..+|.+ .|-.|+..+.-+++.+ +..++|++.+
T Consensus 335 ~ld~VVh~AG-v~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~~V~~SS 391 (511)
T 2z5l_A 335 PPNAVFHTAG-ILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADIKGLDAFVLFSS 391 (511)
T ss_dssp CCSEEEECCC-CCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSCTTCCCEEEEEE
T ss_pred CCcEEEECCc-ccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeC
Confidence 888877663 3334322 2556777777777766 6777776654
No 201
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=38.90 E-value=2.1e+02 Score=28.62 Aligned_cols=100 Identities=12% Similarity=0.063 Sum_probs=49.4
Q ss_pred CEEEEeCChHHHHHHHHH--HHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc----c------hHHHHhh--
Q 006256 456 DVLLTYGSSSAVEMILQH--AHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI----N------AISYIIH-- 521 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~--A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D----s------Av~~iM~-- 521 (653)
.+++|.|.+.++..+++- ..+.| -+|++. .|.+.+.. ..+...|..+..+.- + .+-..+.
T Consensus 97 ~i~~t~g~~~a~~~~~~~~~~~~~g--d~vl~~--~p~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~ 170 (397)
T 3fsl_A 97 ATIQTLGGSGALKVGADFLKRYFPE--SGVWVS--DPTWENHV--AIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTL 170 (397)
T ss_dssp EEEEESHHHHHHHHHHHHHHHHCTT--CCEEEE--SSCCHHHH--HHHHHTTCCEEEECCEETTTTEECHHHHHHHHTTC
T ss_pred EEEEcCCcHHHHHHHHHHHHhcCCC--CeEEEe--CCCchhHH--HHHHHcCCceEEEeeeeccCCcCcHHHHHHHHHhC
Confidence 567777777777655432 22333 245553 36665543 334457887777743 2 2223333
Q ss_pred -hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 522 -~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
.-+++++=..---..|.+++.---..++-+|++|++.+++
T Consensus 171 ~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 211 (397)
T 3fsl_A 171 QAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFL 211 (397)
T ss_dssp CTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEE
Confidence 1123332221112223333322223677788888887665
No 202
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=38.83 E-value=92 Score=25.99 Aligned_cols=82 Identities=15% Similarity=0.109 Sum_probs=47.3
Q ss_pred CCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEE-Eccc--hHHHHhh-hccEEEEcceeEecCCCeecccchHHHHHHHh
Q 006256 478 GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTY-THIN--AISYIIH-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAY 553 (653)
Q Consensus 478 gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~-I~Ds--Av~~iM~-~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak 553 (653)
....+|+|+|..+.. ...+...|...|+.+.. ..+. ++.++-. ..|.||+..+- .+| .-|.-.+..+-+
T Consensus 7 ~~~~~iLivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~~--~~~----~~g~~~~~~l~~ 79 (140)
T 3cg0_A 7 DDLPGVLIVEDGRLA-AATLRIQLESLGYDVLGVFDNGEEAVRCAPDLRPDIALVDIML--CGA----LDGVETAARLAA 79 (140)
T ss_dssp -CCCEEEEECCBHHH-HHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHCCSEEEEESSC--CSS----SCHHHHHHHHHH
T ss_pred CCCceEEEEECCHHH-HHHHHHHHHHCCCeeEEEECCHHHHHHHHHhCCCCEEEEecCC--CCC----CCHHHHHHHHHh
Confidence 356788888877643 33345667777888875 4432 2333322 57899887542 111 123333444444
Q ss_pred hCCCCeeeecccc
Q 006256 554 GFHIPVLVCCEAY 566 (653)
Q Consensus 554 ~~~VPVyV~aety 566 (653)
..++|+++++...
T Consensus 80 ~~~~~ii~ls~~~ 92 (140)
T 3cg0_A 80 GCNLPIIFITSSQ 92 (140)
T ss_dssp HSCCCEEEEECCC
T ss_pred CCCCCEEEEecCC
Confidence 4789999988643
No 203
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=38.76 E-value=2e+02 Score=29.03 Aligned_cols=96 Identities=8% Similarity=-0.042 Sum_probs=52.8
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc---chHHHHhhh-----ccEEE
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---NAISYIIHE-----VTRVF 527 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D---sAv~~iM~~-----Vd~Vl 527 (653)
++++|.|.+.++..+++.+.+.| -.|++. .|.+.+...+ +...|..+..+.. ..+-..+.+ +.+|+
T Consensus 105 ~v~~~~ggt~a~~~~~~~~~~~g--d~V~~~--~p~~~~~~~~--~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~v~ 178 (398)
T 3a2b_A 105 AAILFSTGFQSNLGPLSCLMGRN--DYILLD--ERDHASIIDG--SRLSFSKVIKYGHNNMEDLRAKLSRLPEDSAKLIC 178 (398)
T ss_dssp EEEEESSHHHHHHHHHHHSSCTT--CEEEEE--TTCCHHHHHH--HHHSSSEEEEECTTCHHHHHHHHHTSCSSSCEEEE
T ss_pred cEEEECCHHHHHHHHHHHHhCCC--CEEEEC--CccCHHHHHH--HHHcCCceEEeCCCCHHHHHHHHHhhccCCceEEE
Confidence 56777777777766666553333 345544 4556554333 4456888777753 233344443 33444
Q ss_pred EcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 528 LGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 528 lGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
+.. .-...|.+.. --.++-+|++|++.+++
T Consensus 179 ~~~-~~nptG~~~~---~~~l~~~~~~~~~~li~ 208 (398)
T 3a2b_A 179 TDG-IFSMEGDIVN---LPELTSIANEFDAAVMV 208 (398)
T ss_dssp EES-BCTTTCCBCC---HHHHHHHHHHHTCEEEE
T ss_pred EeC-CCCCCCCccC---HHHHHHHHHHcCcEEEE
Confidence 321 1122354443 35677788999987665
No 204
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=38.65 E-value=1.1e+02 Score=31.50 Aligned_cols=100 Identities=11% Similarity=0.099 Sum_probs=54.1
Q ss_pred CCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc---------hHHHHh-hhcc
Q 006256 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---------AISYII-HEVT 524 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds---------Av~~iM-~~Vd 524 (653)
..+++|-|.+.++..+++.+.+.| -+|++. .|.+.|...+ +...|..+..+... .+-..+ .++.
T Consensus 110 ~~v~~t~G~~~al~~~~~~l~~~g--d~Vl~~--~p~y~~~~~~--~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~ 183 (404)
T 2o1b_A 110 DEVCILYGTKNGLVAVPTCVINPG--DYVLLP--DPGYTDYLAG--VLLADGKPVPLNLEPPHYLPDWSKVDSQIIDKTK 183 (404)
T ss_dssp TSEEEESSHHHHHHHHHHHHCCTT--CEEEEE--ESCCSSHHHH--HHHTTCEEEEEECCTTTCCCCGGGSCHHHHHHEE
T ss_pred ccEEEcCCcHHHHHHHHHHhcCCC--CEEEEc--CCCchhHHHH--HHHCCCEEEEeccCcccCcCCHHHHHHhhccCce
Confidence 467888887778877666554333 355554 3555554433 34568877776421 121222 3455
Q ss_pred EEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 525 ~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
.|++- .--...|.++..-=-..++-+|+.|++.+++
T Consensus 184 ~v~l~-~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 219 (404)
T 2o1b_A 184 LIYLT-YPNNPTGSTATKEVFDEAIAKFKGTDTKIVH 219 (404)
T ss_dssp EEEEC-SSCTTTCCCCCHHHHHHHHHHHTTSSCEEEE
T ss_pred EEEEc-CCCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 56552 2212234443321123467788999987765
No 205
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=38.63 E-value=84 Score=31.66 Aligned_cols=101 Identities=17% Similarity=0.118 Sum_probs=53.1
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccch-------HHHH---hh-h
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA-------ISYI---IH-E 522 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsA-------v~~i---M~-~ 522 (653)
...+++|.|.+.++..+++.+.+.|. +|++. .|.+.+... .+...|+.+..+.... +..+ +. +
T Consensus 90 ~~~v~~~~g~~~a~~~~~~~~~~~gd--~vl~~--~~~~~~~~~--~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 163 (388)
T 1j32_A 90 ADNILVTNGGKQSIFNLMLAMIEPGD--EVIIP--APFWVSYPE--MVKLAEGTPVILPTTVETQFKVSPEQIRQAITPK 163 (388)
T ss_dssp GGGEEEESHHHHHHHHHHHHHCCTTC--EEEEE--SSCCTHHHH--HHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCTT
T ss_pred hhhEEEcCCHHHHHHHHHHHhcCCCC--EEEEc--CCCChhHHH--HHHHcCCEEEEecCCcccCCCCCHHHHHHhcCcC
Confidence 34678888777788777766644443 55554 345555433 3445788887775321 1222 21 2
Q ss_pred ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 523 Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
+..|++ ..---..|.++.+-=-..++-+|++|++.+++
T Consensus 164 ~~~v~~-~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 201 (388)
T 1j32_A 164 TKLLVF-NTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLS 201 (388)
T ss_dssp EEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred ceEEEE-eCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 333433 11111223333322223566688899987776
No 206
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=38.41 E-value=62 Score=32.36 Aligned_cols=92 Identities=13% Similarity=0.147 Sum_probs=50.7
Q ss_pred CCEEEEeCChHHHHHHHHHH-HHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc--------hHHHHhhhccE
Q 006256 455 GDVLLTYGSSSAVEMILQHA-HELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN--------AISYIIHEVTR 525 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A-~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds--------Av~~iM~~Vd~ 525 (653)
.++|+|-+-+.++..+|..+ .+.| -+|++. .|.+.+.. .-+...|+.+.++... .+-..+.+=.+
T Consensus 54 ~~~~~~~~gt~a~~~~~~~~~~~~g--d~v~~~--~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~~~~ 127 (374)
T 3uwc_A 54 PHAIGVGTGTDALAMSFKMLNIGAG--DEVITC--ANTFIASV--GAIVQAGATPVLVDSENGYVIDPEKIEAAITDKTK 127 (374)
T ss_dssp SEEEEESCHHHHHHHHHHHTTCCTT--CEEEEE--SSSCHHHH--HHHHHTTCEEEEECBCTTSSBCGGGTGGGCCTTEE
T ss_pred CcEEEeCCHHHHHHHHHHHcCCCCC--CEEEEC--CCccHHHH--HHHHHcCCEEEEEecCCCCCcCHHHHHHhCCCCce
Confidence 35677766666776666554 3333 355554 34555543 3355679988888632 11111111123
Q ss_pred EEEcceeEecCCCeecccch----HHHHHHHhhCCCCeeee
Q 006256 526 VFLGASSVLSNGTVCSRVGT----ACVAMVAYGFHIPVLVC 562 (653)
Q Consensus 526 VllGAdaIlaNG~V~NKiGT----~~lAl~Ak~~~VPVyV~ 562 (653)
+|+ +.|..|+ -.++-+|+.|++.+++=
T Consensus 128 ~v~----------~~n~~G~~~~~~~i~~~~~~~~~~li~D 158 (374)
T 3uwc_A 128 AIM----------PVHYTGNIADMPALAKIAKKHNLHIVED 158 (374)
T ss_dssp EEC----------CBCGGGCCCCHHHHHHHHHHTTCEEEEE
T ss_pred EEE----------EeCCcCCcCCHHHHHHHHHHcCCEEEEe
Confidence 333 2334443 45777899999988763
No 207
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=38.40 E-value=70 Score=32.18 Aligned_cols=23 Identities=9% Similarity=0.130 Sum_probs=17.0
Q ss_pred HHHHHHHhhCCCCeeeecccccc
Q 006256 546 ACVAMVAYGFHIPVLVCCEAYKF 568 (653)
Q Consensus 546 ~~lAl~Ak~~~VPVyV~aetyKf 568 (653)
+...++|+..+||++.++..+-+
T Consensus 114 ~~~~~aA~~~giP~v~~~~~~~~ 136 (402)
T 3ia7_A 114 IAGRLLAARWDRPAVRLTGGFAA 136 (402)
T ss_dssp HHHHHHHHHHTCCEEEEESSCCC
T ss_pred HHHHHHHHhhCCCEEEEeccccc
Confidence 33567889999999988765543
No 208
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=38.36 E-value=50 Score=33.56 Aligned_cols=91 Identities=12% Similarity=0.070 Sum_probs=56.2
Q ss_pred CCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHH-----hhhccEEEEc
Q 006256 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYI-----IHEVTRVFLG 529 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~i-----M~~Vd~VllG 529 (653)
.+.|+..|++..-..+.+.+.++| . |+++|..|.. +. |.+.|+++.+- |..-... +.++|.|++-
T Consensus 115 ~~~viI~G~G~~g~~l~~~L~~~g--~-v~vid~~~~~-----~~-~~~~~~~~i~g-d~~~~~~L~~a~i~~a~~vi~~ 184 (336)
T 1lnq_A 115 SRHVVICGWSESTLECLRELRGSE--V-FVLAEDENVR-----KK-VLRSGANFVHG-DPTRVSDLEKANVRGARAVIVD 184 (336)
T ss_dssp -CEEEEESCCHHHHHHHTTGGGSC--E-EEEESCGGGH-----HH-HHHTTCEEEES-CTTSHHHHHHTCSTTEEEEEEC
T ss_pred cCCEEEECCcHHHHHHHHHHHhCC--c-EEEEeCChhh-----hh-HHhCCcEEEEe-CCCCHHHHHhcChhhccEEEEc
Confidence 457899999887666666665544 4 7788876642 33 56678775443 3332222 3356666654
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCCeeeecc
Q 006256 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCE 564 (653)
Q Consensus 530 AdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~ae 564 (653)
.+ +..-+..+++.||+++....+++.
T Consensus 185 ~~---------~d~~n~~~~~~ar~~~~~~~iiar 210 (336)
T 1lnq_A 185 LE---------SDSETIHCILGIRKIDESVRIIAE 210 (336)
T ss_dssp CS---------SHHHHHHHHHHHHTTCTTSEEEEE
T ss_pred CC---------ccHHHHHHHHHHHHHCCCCeEEEE
Confidence 32 234567788999999876555543
No 209
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=38.15 E-value=96 Score=31.23 Aligned_cols=101 Identities=14% Similarity=0.124 Sum_probs=53.1
Q ss_pred CCC-EEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc-------hHHHHhh----
Q 006256 454 DGD-VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-------AISYIIH---- 521 (653)
Q Consensus 454 dGd-vILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds-------Av~~iM~---- 521 (653)
... +++|.|.+.++..+++.+.+.| -+|++.+ |.+.|... .+...|+.+..+... .+..+-.
T Consensus 86 ~~~~v~~~~g~~~a~~~~~~~~~~~g--d~vl~~~--~~~~~~~~--~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~ 159 (389)
T 1gd9_A 86 PKTEIMVLLGANQAFLMGLSAFLKDG--EEVLIPT--PAFVSYAP--AVILAGGKPVEVPTYEEDEFRLNVDELKKYVTD 159 (389)
T ss_dssp TTTSEEEESSTTHHHHHHHTTTCCTT--CEEEEEE--SCCTTHHH--HHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCT
T ss_pred CCCeEEEcCChHHHHHHHHHHhCCCC--CEEEEcC--CCchhHHH--HHHHCCCEEEEeccCCccCCCCCHHHHHHhcCc
Confidence 346 8888888888877666554333 3555543 44555432 234468888777521 1222222
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 522 ~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
++..|++ ..---..|.++..-=-..++-+|++|++.+++
T Consensus 160 ~~~~v~~-~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~ 198 (389)
T 1gd9_A 160 KTRALII-NSPCNPTGAVLTKKDLEEIADFVVEHDLIVIS 198 (389)
T ss_dssp TEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CceEEEE-ECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 2333433 21111234333322233466688999987765
No 210
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=38.01 E-value=1.6e+02 Score=29.97 Aligned_cols=99 Identities=18% Similarity=0.247 Sum_probs=52.0
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc--------hHHHH---hh-hc
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN--------AISYI---IH-EV 523 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds--------Av~~i---M~-~V 523 (653)
.+++|.|.+.++..+++.+.+.| -+|++.+ |.+.|.. ..+...|+.+..+... .+..+ +. ++
T Consensus 88 ~v~~t~g~~~al~~~~~~~~~~g--d~Vl~~~--~~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~ 161 (411)
T 2o0r_A 88 EVLVTVGATEAIAAAVLGLVEPG--SEVLLIE--PFYDSYS--PVVAMAGAHRVTVPLVPDGRGFALDADALRRAVTPRT 161 (411)
T ss_dssp SEEEEEHHHHHHHHHHHHHCCTT--CEEEEEE--SCCTTHH--HHHHHTTCEEEEEECEEETTEEECCHHHHHHHCCTTE
T ss_pred eEEEeCCHHHHHHHHHHHhcCCC--CEEEEeC--CCcHhHH--HHHHHcCCEEEEeeccccccCCCCCHHHHHHhhccCc
Confidence 68888888888877666654333 3566543 4454543 2345678877766421 12222 22 23
Q ss_pred cEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 524 d~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
.+|++- .---..|.++..-=-..++-+|+.|++.+++
T Consensus 162 ~~v~l~-~~~nptG~~~~~~~l~~i~~~~~~~~~~li~ 198 (411)
T 2o0r_A 162 RALIIN-SPHNPTGAVLSATELAAIAEIAVAANLVVIT 198 (411)
T ss_dssp EEEEEE-SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred eEEEEe-CCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 334331 1111223332211114677789999987775
No 211
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=37.87 E-value=4.1e+02 Score=28.47 Aligned_cols=94 Identities=15% Similarity=0.102 Sum_probs=55.4
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCC-CCEEEEc--cc-hHHHHhh--hccEEE
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKG-LSCTYTH--IN-AISYIIH--EVTRVF 527 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~G-I~vT~I~--Ds-Av~~iM~--~Vd~Vl 527 (653)
.|..|+.++....+..+.+-+.+.|-....+++.+.....-.++.+.|.+.| ..+.++. |. .+..+++ ++|++|
T Consensus 311 ~gkrv~i~~~~~~~~~l~~~L~elG~~vv~v~~~~~~~~~~~~~~~ll~~~~~~~~~v~~~~d~~~l~~~i~~~~pDl~i 390 (458)
T 1mio_B 311 QGKKVALLGDPDEIIALSKFIIELGAIPKYVVTGTPGMKFQKEIDAMLAEAGIEGSKVKVEGDFFDVHQWIKNEGVDLLI 390 (458)
T ss_dssp TTCEEEEEECHHHHHHHHHHHHTTTCEEEEEEESSCCHHHHHHHHHHHHTTTCCSCEEEESCBHHHHHHHHHHSCCSEEE
T ss_pred CCCEEEEEcCchHHHHHHHHHHHCCCEEEEEEeCCCCHHHHHHHHHHHHhcCCCCCEEEECCCHHHHHHHHHhcCCCEEE
Confidence 6888999988776656555556677766665666643322334444455555 5544444 32 2444454 466665
Q ss_pred EcceeEecCCCeecccchHHHHHHHhhCCCCeeeec
Q 006256 528 LGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (653)
Q Consensus 528 lGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~a 563 (653)
-|-. -.-+|+..++|++.+.
T Consensus 391 g~~~----------------~~~~a~k~gip~~~~~ 410 (458)
T 1mio_B 391 SNTY----------------GKFIAREENIPFVRFG 410 (458)
T ss_dssp ESGG----------------GHHHHHHHTCCEEECS
T ss_pred eCcc----------------hHHHHHHcCCCEEEee
Confidence 3321 2345788899999764
No 212
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=37.85 E-value=90 Score=30.90 Aligned_cols=98 Identities=16% Similarity=0.155 Sum_probs=50.6
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc--------hHHHHhh---h
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN--------AISYIIH---E 522 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds--------Av~~iM~---~ 522 (653)
...+++|.|.+.++..++..+.+.| -+|++.+ |.+.+.. ..+...|+++..+... .+-..+. +
T Consensus 68 ~~~i~~~~g~~~a~~~~~~~l~~~g--d~vl~~~--~~~~~~~--~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~~ 141 (354)
T 3ly1_A 68 APSILLTAGSSEGIRAAIEAYASLE--AQLVIPE--LTYGDGE--HFAKIAGMKVTKVKMLDNWAFDIEGLKAAVAAYSG 141 (354)
T ss_dssp GGGEEEESHHHHHHHHHHHHHCCTT--CEEEEES--SSCTHHH--HHHHHTTCEEEEECCCTTSCCCHHHHHHHHHTCSS
T ss_pred hHHEEEeCChHHHHHHHHHHHhCCC--CeEEECC--CCchHHH--HHHHHcCCEEEEecCCCCCCCCHHHHHHHhccCCC
Confidence 3467777777777766665543333 3566544 5555543 3344678888887532 3444443 4
Q ss_pred ccEEEEcceeEecCCCeecccchHHHHHHHhh--CCCCeee
Q 006256 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYG--FHIPVLV 561 (653)
Q Consensus 523 Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~--~~VPVyV 561 (653)
+..|++ ...-...|.++..- .+.-+++. |++.+++
T Consensus 142 ~~~v~l-~~p~nptG~~~~~~---~l~~l~~~~~~~~~li~ 178 (354)
T 3ly1_A 142 PSIVYL-VNPNNPTGTITPAD---VIEPWIASKPANTMFIV 178 (354)
T ss_dssp CEEEEE-ESSCTTTCCCCCHH---HHHHHHHTCCTTEEEEE
T ss_pred CCEEEE-eCCCCCcCCCcCHH---HHHHHHHhCCCCeEEEE
Confidence 555554 22222234333322 24444444 6765554
No 213
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=37.71 E-value=79 Score=32.25 Aligned_cols=22 Identities=14% Similarity=0.199 Sum_probs=16.8
Q ss_pred HHHHHHhhCCCCeeeecccccc
Q 006256 547 CVAMVAYGFHIPVLVCCEAYKF 568 (653)
Q Consensus 547 ~lAl~Ak~~~VPVyV~aetyKf 568 (653)
...++|+..+||++.+...+-+
T Consensus 131 ~~~~aA~~~giP~v~~~~~~~~ 152 (415)
T 3rsc_A 131 AGQLLAARWRRPAVRLSAAFAS 152 (415)
T ss_dssp HHHHHHHHTTCCEEEEESSCCC
T ss_pred HHHHHHHHhCCCEEEEEecccc
Confidence 3567799999999988865543
No 214
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=37.68 E-value=26 Score=34.42 Aligned_cols=86 Identities=14% Similarity=0.111 Sum_probs=50.6
Q ss_pred CCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccch---HHHHhhhccEEEEcceeEecCCCe-ecccchHHHHHH--
Q 006256 478 GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA---ISYIIHEVTRVFLGASSVLSNGTV-CSRVGTACVAMV-- 551 (653)
Q Consensus 478 gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsA---v~~iM~~Vd~VllGAdaIlaNG~V-~NKiGT~~lAl~-- 551 (653)
....+|.|+.-.|...-..+.+.|...|++++++.-.. +...+.++|.+|+.=-.....+.. ..... ..+.++
T Consensus 10 ~~~~~~~~i~~~~~~~~~~i~~~l~~~G~~v~v~~~~~~~~~~~~l~~~Dglil~GG~~~~~~~~~~~~l~-~~~~~i~~ 88 (239)
T 1o1y_A 10 HHHVRVLAIRHVEIEDLGMMEDIFREKNWSFDYLDTPKGEKLERPLEEYSLVVLLGGYMGAYEEEKYPFLK-YEFQLIEE 88 (239)
T ss_dssp CCCCEEEEECSSTTSSCTHHHHHHHHTTCEEEEECGGGTCCCSSCGGGCSEEEECCCSCCTTCTTTCTHHH-HHHHHHHH
T ss_pred cceeEEEEEECCCCCCchHHHHHHHhCCCcEEEeCCcCccccccchhcCCEEEECCCCccccCCccChhHH-HHHHHHHH
Confidence 45678999988887665567788999999998765332 122345788877732111111111 11111 223333
Q ss_pred HhhCCCCeeeecc
Q 006256 552 AYGFHIPVLVCCE 564 (653)
Q Consensus 552 Ak~~~VPVyV~ae 564 (653)
|...++|++-+|=
T Consensus 89 ~~~~~~PiLGIC~ 101 (239)
T 1o1y_A 89 ILKKEIPFLGICL 101 (239)
T ss_dssp HHHHTCCEEEETH
T ss_pred HHHCCCCEEEEch
Confidence 3456899997775
No 215
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=37.40 E-value=1e+02 Score=27.07 Aligned_cols=54 Identities=13% Similarity=0.249 Sum_probs=37.1
Q ss_pred EEEeCCh-HHHHHHHHHHHHcCCeeEEEEeCCCCC-chHHHHHHHHHhCCCCEEEE
Q 006256 458 LLTYGSS-SAVEMILQHAHELGKQFRVVIVDSRPK-HEGKLLLRRLVRKGLSCTYT 511 (653)
Q Consensus 458 ILT~g~S-s~Ve~vL~~A~e~gk~f~ViV~ESRP~-~EG~~La~eL~~~GI~vT~I 511 (653)
|.++-.+ ..+...|..|.++|.+.+|++....-. .......+.|.+.|+++.+.
T Consensus 32 i~~~~~~~~~i~~aL~~a~~rGV~Vril~~~~~~~~~~~~~~~~~L~~~gv~v~~~ 87 (155)
T 1byr_A 32 MMAYSFTAPDIMKALVAAKKRGVDVKIVIDERGNTGRASIAAMNYIANSGIPLRTD 87 (155)
T ss_dssp EEESSBCCHHHHHHHHHHHHTTCEEEEEEESTTCCSHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHCCCEEEEEEeCccccccccHHHHHHHHHCCCeEEEc
Confidence 4444433 345567888888999999888765432 23455668899999998765
No 216
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=37.25 E-value=2.2e+02 Score=29.21 Aligned_cols=112 Identities=9% Similarity=-0.066 Sum_probs=60.8
Q ss_pred EEEEeCChHHHHHHHHHHHHcCCeeEEE-EeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcc-----
Q 006256 457 VLLTYGSSSAVEMILQHAHELGKQFRVV-IVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA----- 530 (653)
Q Consensus 457 vILT~g~Ss~Ve~vL~~A~e~gk~f~Vi-V~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGA----- 530 (653)
.|..+|.+..-...+....+....++|+ |++..+.. ...++.+ .||.+....|-.-..--.++|.|++..
T Consensus 25 rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~-~~~~a~~---~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h 100 (357)
T 3ec7_A 25 KAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGR-AQAALDK---YAIEAKDYNDYHDLINDKDVEVVIITASNEAH 100 (357)
T ss_dssp EEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTH-HHHHHHH---HTCCCEEESSHHHHHHCTTCCEEEECSCGGGH
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHH-HHHHHHH---hCCCCeeeCCHHHHhcCCCCCEEEEcCCcHHH
Confidence 6888888875444444444244567765 66655532 2223322 355455444422211123577777643
Q ss_pred ------------eeEecCCCeecccchHHHHHHHhhCCCCeeeecccccccccc
Q 006256 531 ------------SSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERV 572 (653)
Q Consensus 531 ------------daIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~ 572 (653)
+.++.-=-..+--....+.-+|+..++.++.++-.+.|.+.+
T Consensus 101 ~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~~v~~~~R~~p~~ 154 (357)
T 3ec7_A 101 ADVAVAALNANKYVFCEKPLAVTAADCQRVIEAEQKNGKRMVQIGFMRRYDKGY 154 (357)
T ss_dssp HHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHTSCCEEEECGGGGSHHH
T ss_pred HHHHHHHHHCCCCEEeecCccCCHHHHHHHHHHHHHhCCeEEEEeecccCCHHH
Confidence 333333333344455566677888888886556666776654
No 217
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=37.23 E-value=1.5e+02 Score=30.43 Aligned_cols=98 Identities=15% Similarity=0.099 Sum_probs=53.1
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHH-HHHH-HhCCCCEEEEccchHHHH---hh-hccEEEEc
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-LRRL-VRKGLSCTYTHINAISYI---IH-EVTRVFLG 529 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~L-a~eL-~~~GI~vT~I~DsAv~~i---M~-~Vd~VllG 529 (653)
+.|++-+.+.++..+|..+.+.| -+|++.+ |.+.+... ...+ ...|+.+.++....+..+ +. ++..|++.
T Consensus 82 ~~i~~~sG~~a~~~~l~~~~~~g--d~vl~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~~~~~~v~~~ 157 (398)
T 1gc0_A 82 AGLALASGMGAITSTLWTLLRPG--DEVLLGN--TLYGCTFAFLHHGIGEFGVKLRHVDMADLQALEAAMTPATRVIYFE 157 (398)
T ss_dssp EEEEESSHHHHHHHHHHHHCCTT--CEEEEES--SCCSHHHHHHHHTGGGGTCEEEEECTTCHHHHHHHCCTTEEEEEEE
T ss_pred cEEEECCHHHHHHHHHHHHhcCC--CEEEEeC--CCchhHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCCCeEEEEE
Confidence 45555554556666565554333 3566543 45555433 3333 667999998863333333 32 34445442
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 530 AdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
..--..|.+.. --.++-+|++|++.++|
T Consensus 158 -~~~nptG~~~~---l~~i~~l~~~~~~~li~ 185 (398)
T 1gc0_A 158 -SPANPNMHMAD---IAGVAKIARKHGATVVV 185 (398)
T ss_dssp -SSCTTTCCCCC---HHHHHHHHGGGTCEEEE
T ss_pred -CCCCCCccccc---HHHHHHHHHHcCCEEEE
Confidence 11112344442 35677789999998775
No 218
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=37.21 E-value=55 Score=29.67 Aligned_cols=104 Identities=10% Similarity=0.127 Sum_probs=57.2
Q ss_pred CEEEEeCChHHHHH-HHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEE--cc-chHHHHhhhccEEEEcce
Q 006256 456 DVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT--HI-NAISYIIHEVTRVFLGAS 531 (653)
Q Consensus 456 dvILT~g~Ss~Ve~-vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I--~D-sAv~~iM~~Vd~VllGAd 531 (653)
.+||..|-+.-+.. +++.+.++| .+|+++.-++... ..+...++.+... .| ..+..++..+|.||.-|-
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g--~~V~~~~r~~~~~-----~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~ 76 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAG--YEVTVLVRDSSRL-----PSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLG 76 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCGGGS-----CSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCC
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCC--CeEEEEEeChhhc-----ccccCCceEEEEecCCCHHHHHHHHcCCCEEEECcc
Confidence 46888887665543 344555555 5677665443210 0111234333221 12 345666777888876542
Q ss_pred eEec-CCCeecccchHHHHHHHhhCCCCeeeecccc
Q 006256 532 SVLS-NGTVCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (653)
Q Consensus 532 aIla-NG~V~NKiGT~~lAl~Ak~~~VPVyV~aety 566 (653)
.... +-.-+|-.|+..+.-+|+.+++.-+|...+.
T Consensus 77 ~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~Ss~ 112 (206)
T 1hdo_A 77 TRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSA 112 (206)
T ss_dssp CTTCCSCCCHHHHHHHHHHHHHHHHTCCEEEEECCG
T ss_pred CCCCCCccchHHHHHHHHHHHHHHhCCCeEEEEeee
Confidence 2110 1122466788898888998898766655544
No 219
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=36.78 E-value=1.2e+02 Score=31.39 Aligned_cols=97 Identities=16% Similarity=0.156 Sum_probs=51.4
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHH-HH-HHHhCCCCEEEEccch---HHHHhh-hccEEEEc
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-LR-RLVRKGLSCTYTHINA---ISYIIH-EVTRVFLG 529 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~L-a~-eL~~~GI~vT~I~DsA---v~~iM~-~Vd~VllG 529 (653)
+.|++-+.+.++..++. ..+.| -+|++.+ |.+.|... .. .+...|+.++++.... +...+. ++.+|++
T Consensus 84 ~~i~~~sG~~ai~~~~~-l~~~g--d~Vl~~~--~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~~i~~~t~~v~~- 157 (403)
T 3cog_A 84 YCLAFASGLAATVTITH-LLKAG--DQIICMD--DVYGGTNRYFRQVASEFGLKISFVDCSKIKLLEAAITPETKLVWI- 157 (403)
T ss_dssp EEEEESCHHHHHHHHHT-TSCTT--CEEEEES--SCCHHHHHHHHHTGGGGTCEEEEECTTSHHHHHHHCCTTEEEEEE-
T ss_pred cEEEECCHHHHHHHHHH-HhCCC--CEEEEeC--CCcchHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCcCCeEEEE-
Confidence 34444443456655555 43333 3566654 66766432 33 3466899999986432 222332 3334443
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCC-CCeee
Q 006256 530 ASSVLSNGTVCSRVGTACVAMVAYGFH-IPVLV 561 (653)
Q Consensus 530 AdaIlaNG~V~NKiGT~~lAl~Ak~~~-VPVyV 561 (653)
..---..|.+.. --.++-+|++|+ +.++|
T Consensus 158 ~~p~nptG~~~~---l~~i~~la~~~g~~~liv 187 (403)
T 3cog_A 158 ETPTNPTQKVID---IEGCAHIVHKHGDIILVV 187 (403)
T ss_dssp ESSCTTTCCCCC---HHHHHHHHTSSSCCEEEE
T ss_pred ECCCCCCCeeeC---HHHHHHHHHHcCCCEEEE
Confidence 211223354443 356777889998 76665
No 220
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Probab=36.54 E-value=1.7e+02 Score=29.29 Aligned_cols=110 Identities=13% Similarity=0.042 Sum_probs=59.6
Q ss_pred CCCEEEEeCChHHHHHHH-HHHHHcCCeeEEEEeCCCCCchHHHH---HHHHH---hCCCCEEEE--cc-chHHHHhhhc
Q 006256 454 DGDVLLTYGSSSAVEMIL-QHAHELGKQFRVVIVDSRPKHEGKLL---LRRLV---RKGLSCTYT--HI-NAISYIIHEV 523 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL-~~A~e~gk~f~ViV~ESRP~~EG~~L---a~eL~---~~GI~vT~I--~D-sAv~~iM~~V 523 (653)
.+.+||..|.+.-|...| +.+.++| .+|+++.-++......+ ..++. ..++.+... .| ..+..++..+
T Consensus 26 ~~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 103 (352)
T 1sb8_A 26 QPKVWLITGVAGFIGSNLLETLLKLD--QKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV 103 (352)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC
T ss_pred cCCeEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCC
Confidence 456888888866554443 4444555 57777754443211122 11111 234433222 11 2455666777
Q ss_pred cEEEEcceeEecC---CC-----eecccchHHHHHHHhhCCCCeeeeccc
Q 006256 524 TRVFLGASSVLSN---GT-----VCSRVGTACVAMVAYGFHIPVLVCCEA 565 (653)
Q Consensus 524 d~VllGAdaIlaN---G~-----V~NKiGT~~lAl~Ak~~~VPVyV~aet 565 (653)
|.||--|-..... .+ -+|-.||..+.-+|+.+++.-+|.+.+
T Consensus 104 d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS 153 (352)
T 1sb8_A 104 DYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAAS 153 (352)
T ss_dssp SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred CEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Confidence 7777654321100 00 146789999999999999876665444
No 221
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=36.45 E-value=81 Score=32.72 Aligned_cols=102 Identities=19% Similarity=0.236 Sum_probs=56.4
Q ss_pred cCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc-------hHHHHhh----
Q 006256 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-------AISYIIH---- 521 (653)
Q Consensus 453 ~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds-------Av~~iM~---- 521 (653)
...++++|.|.+.++..+++.+.+.| -+|++. .|.+.+.. ..+...|+.+..+... .+..+..
T Consensus 117 ~~~~v~~t~g~t~al~~~~~~l~~~g--d~vl~~--~p~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~ 190 (427)
T 3dyd_A 117 EAKDVILTSGCSQAIDLCLAVLANPG--QNILVP--RPGFSLYK--TLAESMGIEVKLYNLLPEKSWEIDLKQLEYLIDE 190 (427)
T ss_dssp CGGGEEEESSHHHHHHHHHHHHCCTT--CEEEEE--ESCCTHHH--HHHHHTTCEEEEEEEEGGGTTEECHHHHHSSCCT
T ss_pred ChHHEEEecCcHHHHHHHHHHhcCCC--CEEEEc--CCCchhHH--HHHHHcCCEEEEEecccccCCCCCHHHHHHHhcc
Confidence 34578888888888877666654333 356654 36665544 3345678887776421 1222322
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 522 ~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
+...|++- +.--..|.++.+----.++-+|+.|++.+++
T Consensus 191 ~~~~v~i~-~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~ 229 (427)
T 3dyd_A 191 KTACLIVN-NPSNPCGSVFSKRHLQKILAVAARQCVPILA 229 (427)
T ss_dssp TEEEEEEE-SSCTTTCCCCCHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCEEEEE-CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 22233321 1112234444333345677789999998876
No 222
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=35.94 E-value=53 Score=30.44 Aligned_cols=99 Identities=10% Similarity=-0.018 Sum_probs=56.2
Q ss_pred EEEEeCChHHHHHH-HHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEE--ccchHHHHhhhccEEEEcceeE
Q 006256 457 VLLTYGSSSAVEMI-LQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT--HINAISYIIHEVTRVFLGASSV 533 (653)
Q Consensus 457 vILT~g~Ss~Ve~v-L~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I--~DsAv~~iM~~Vd~VllGAdaI 533 (653)
.||..|-+.-+... ++.+.++| .+|+++.-++. . +.+|...++.+... .|... ..+..+|.||--|-..
T Consensus 2 kilVtGatG~iG~~l~~~L~~~g--~~V~~~~R~~~----~-~~~~~~~~~~~~~~D~~d~~~-~~~~~~d~vi~~ag~~ 73 (224)
T 3h2s_A 2 KIAVLGATGRAGSAIVAEARRRG--HEVLAVVRDPQ----K-AADRLGATVATLVKEPLVLTE-ADLDSVDAVVDALSVP 73 (224)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHH----H-HHHHTCTTSEEEECCGGGCCH-HHHTTCSEEEECCCCC
T ss_pred EEEEEcCCCHHHHHHHHHHHHCC--CEEEEEEeccc----c-cccccCCCceEEecccccccH-hhcccCCEEEECCccC
Confidence 47777776555433 34455555 46666643321 1 23444556654432 23223 5666788777655332
Q ss_pred -ecCCCeecccchHHHHHHHhhCCCCeeeec
Q 006256 534 -LSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (653)
Q Consensus 534 -laNG~V~NKiGT~~lAl~Ak~~~VPVyV~a 563 (653)
...-.-.|-.||..+.-+|+..+..|++++
T Consensus 74 ~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~S 104 (224)
T 3h2s_A 74 WGSGRGYLHLDFATHLVSLLRNSDTLAVFIL 104 (224)
T ss_dssp TTSSCTHHHHHHHHHHHHTCTTCCCEEEEEC
T ss_pred CCcchhhHHHHHHHHHHHHHHHcCCcEEEEe
Confidence 111223488899999999999996666664
No 223
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=35.80 E-value=1.4e+02 Score=25.12 Aligned_cols=79 Identities=15% Similarity=0.092 Sum_probs=44.9
Q ss_pred eeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHH--HHhh-hccEEEEcceeEecCCCeecccchHHHHHHHh---
Q 006256 480 QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAIS--YIIH-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAY--- 553 (653)
Q Consensus 480 ~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~--~iM~-~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak--- 553 (653)
..+|+|+|..+.. ...+...|.+.|..|....+..-+ .+-. ..|.||+..+ +.+. -|.-.+..+-+
T Consensus 4 ~~~iLivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--lp~~-----~g~~~~~~lr~~~~ 75 (136)
T 3t6k_A 4 PHTLLIVDDDDTV-AEMLELVLRGAGYEVRRAASGEEALQQIYKNLPDALICDVL--LPGI-----DGYTLCKRVRQHPL 75 (136)
T ss_dssp CCEEEEECSCHHH-HHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSS-----CHHHHHHHHHHSGG
T ss_pred CCEEEEEeCCHHH-HHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCC--CCCC-----CHHHHHHHHHcCCC
Confidence 4577787776654 233446677788877765543322 2222 4788888543 3332 24444444433
Q ss_pred hCCCCeeeecccc
Q 006256 554 GFHIPVLVCCEAY 566 (653)
Q Consensus 554 ~~~VPVyV~aety 566 (653)
..++|+++++...
T Consensus 76 ~~~~pii~~t~~~ 88 (136)
T 3t6k_A 76 TKTLPILMLTAQG 88 (136)
T ss_dssp GTTCCEEEEECTT
T ss_pred cCCccEEEEecCC
Confidence 2379999988643
No 224
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=35.71 E-value=2.6e+02 Score=28.19 Aligned_cols=97 Identities=15% Similarity=0.068 Sum_probs=52.6
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHH-HHHH-HhCCCCEEEEccc---hHHHHhh-hccEEEEc
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-LRRL-VRKGLSCTYTHIN---AISYIIH-EVTRVFLG 529 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~L-a~eL-~~~GI~vT~I~Ds---Av~~iM~-~Vd~VllG 529 (653)
+.|++-+.+.++..+++.+.+ +.-+|++.+ |.+.|... .+.+ ...|+.+.++... .+-..+. ++..|++-
T Consensus 69 ~~i~~~sGt~a~~~~~~~~~~--~g~~vl~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~~~~~~v~~~ 144 (386)
T 1cs1_A 69 GAVLTNTGMSAIHLVTTVFLK--PGDLLVAPH--DCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVE 144 (386)
T ss_dssp EEEEESSHHHHHHHHHHHHCC--TTCEEEEET--TCCHHHHHHHHHHHTTTSCEEEEECTTCHHHHHHHHHTCCSEEEEE
T ss_pred cEEEeCCHHHHHHHHHHHHhC--CCCEEEEec--CCcHhHHHHHHHHHHhcCCEEEEeCCCCHHHHHHhhccCCcEEEEe
Confidence 445443335566555555433 334566654 66665332 2333 5679998888632 2333333 45556552
Q ss_pred ceeEe-cCCCeecccchHHHHHHHhhCCCCeee
Q 006256 530 ASSVL-SNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 530 AdaIl-aNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
.+. ..|.+.. -..++-+|++|++.+++
T Consensus 145 --~~~nptG~~~~---l~~i~~l~~~~~~~li~ 172 (386)
T 1cs1_A 145 --SPSNPLLRVVD---IAKICHLAREVGAVSVV 172 (386)
T ss_dssp --CSCTTTCCCCC---HHHHHHHHHHTTCEEEE
T ss_pred --CCCCCCCcccC---HHHHHHHHHHcCCEEEE
Confidence 222 2244442 35677789999987765
No 225
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=35.60 E-value=2.3e+02 Score=27.53 Aligned_cols=62 Identities=15% Similarity=0.082 Sum_probs=36.2
Q ss_pred HHHhCCCC---EEEEccchHHHHhh-----hccEEEEcceeEecCCCeec-ccchHHHHHHHhhCCCCeeeeccc
Q 006256 500 RLVRKGLS---CTYTHINAISYIIH-----EVTRVFLGASSVLSNGTVCS-RVGTACVAMVAYGFHIPVLVCCEA 565 (653)
Q Consensus 500 eL~~~GI~---vT~I~DsAv~~iM~-----~Vd~VllGAdaIlaNG~V~N-KiGT~~lAl~Ak~~~VPVyV~aet 565 (653)
.+.+.|++ +.+...+..-.++. ++|++++|+..- |.+-. -.|+-.-.+ .++-.+||+|+=+.
T Consensus 207 ~~~~~g~~~~~~~v~~g~~~~~I~~~a~~~~~dLiVmG~~g~---~~~~~~~~Gsv~~~v-l~~~~~pVLvv~~~ 277 (290)
T 3mt0_A 207 FQAEYGFSDEQLHIEEGPADVLIPRTAQKLDAVVTVIGTVAR---TGLSGALIGNTAEVV-LDTLESDVLVLKPD 277 (290)
T ss_dssp HHHHHTCCTTTEEEEESCHHHHHHHHHHHHTCSEEEEECCSS---CCGGGCCSCHHHHHH-HTTCSSEEEEECCH
T ss_pred HHHHcCCCcceEEEeccCHHHHHHHHHHhcCCCEEEECCCCC---cCCcceecchHHHHH-HhcCCCCEEEECCC
Confidence 34455774 34444444333333 499999999752 22322 256654444 56678999998543
No 226
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=35.56 E-value=3.3e+02 Score=26.68 Aligned_cols=57 Identities=19% Similarity=0.179 Sum_probs=34.3
Q ss_pred CCCCEEEEc--cc---hHHHHhhhccEEEEcceeEecCCCeecc-cchHHHHHHHhhCCCCeeeecc
Q 006256 504 KGLSCTYTH--IN---AISYIIHEVTRVFLGASSVLSNGTVCSR-VGTACVAMVAYGFHIPVLVCCE 564 (653)
Q Consensus 504 ~GI~vT~I~--Ds---Av~~iM~~Vd~VllGAdaIlaNG~V~NK-iGT~~lAl~Ak~~~VPVyV~ae 564 (653)
.|+++++.. .+ .+-.+..++|++++|+..- |.+-.. .|+..-.++ ++..+||+|+=+
T Consensus 244 ~~~~~~~~~~~g~~~~~I~~~a~~adliV~G~~~~---~~~~~~l~Gsv~~~vl-~~~~~pVlvv~~ 306 (309)
T 3cis_A 244 PNVAITRVVVRDQPARQLVQRSEEAQLVVVGSRGR---GGYAGMLVGSVGETVA-QLARTPVIVARE 306 (309)
T ss_dssp TTSCEEEEEESSCHHHHHHHHHTTCSEEEEESSCS---SCCTTCSSCHHHHHHH-HHCSSCEEEECC
T ss_pred CCCcEEEEEEcCCHHHHHHHhhCCCCEEEECCCCC---CCccccccCcHHHHHH-hcCCCCEEEeCC
Confidence 488876532 22 2333334799999999752 222222 465555554 667899999854
No 227
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=35.51 E-value=1.2e+02 Score=25.67 Aligned_cols=79 Identities=22% Similarity=0.228 Sum_probs=45.3
Q ss_pred eeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccch--HHHHhh-hccEEEEcceeEecCCCeecccchHHHHHHHhhCC
Q 006256 480 QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA--ISYIIH-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFH 556 (653)
Q Consensus 480 ~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsA--v~~iM~-~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~ 556 (653)
..+|+|+|..+.. ...+...|...|+.|....+.. +..+-. ..|.||+..+ +.+. -|--.+..+-+...
T Consensus 4 ~~~Ilivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~--l~~~-----~g~~l~~~l~~~~~ 75 (136)
T 2qzj_A 4 QTKILIIDGDKDN-CQKLKGFLEEKGISIDLAYNCEEAIGKIFSNKYDLIFLEII--LSDG-----DGWTLCKKIRNVTT 75 (136)
T ss_dssp CCEEEEECSCHHH-HHHHHHHHHTTTCEEEEESSHHHHHHHHHHCCCSEEEEESE--ETTE-----EHHHHHHHHHTTCC
T ss_pred CCeEEEEcCCHHH-HHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCEEEEeCC--CCCC-----CHHHHHHHHccCCC
Confidence 4577888876643 2334466777788776555432 222222 4788888653 3321 24334444444458
Q ss_pred CCeeeecccc
Q 006256 557 IPVLVCCEAY 566 (653)
Q Consensus 557 VPVyV~aety 566 (653)
+|+++++...
T Consensus 76 ~~ii~ls~~~ 85 (136)
T 2qzj_A 76 CPIVYMTYIN 85 (136)
T ss_dssp CCEEEEESCC
T ss_pred CCEEEEEcCC
Confidence 9999887643
No 228
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=35.48 E-value=1.1e+02 Score=31.15 Aligned_cols=102 Identities=16% Similarity=0.167 Sum_probs=52.9
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc-------chHHHHhh--hcc
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-------NAISYIIH--EVT 524 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D-------sAv~~iM~--~Vd 524 (653)
...+++|.|.+.++..+++.+.+.| -+|++. .|.+.|.... +...|.++..+.. ..+-..+. ++.
T Consensus 91 ~~~v~~~~g~~~al~~~~~~~~~~g--d~Vl~~--~p~y~~~~~~--~~~~g~~~~~~~~~~~~~d~~~l~~~l~~~~~~ 164 (397)
T 2zyj_A 91 PEEVLITTGSQQALDLVGKVFLDEG--SPVLLE--APSYMGAIQA--FRLQGPRFLTVPAGEEGPDLDALEEVLKRERPR 164 (397)
T ss_dssp GGGEEEESHHHHHHHHHHHHHCCTT--CEEEEE--ESCCHHHHHH--HHTTCCEEEEEEEETTEECHHHHHHHHHHCCCS
T ss_pred hhhEEEeccHHHHHHHHHHHhCCCC--CEEEEe--CCCcHHHHHH--HHHcCCEEEecCcCCCCCCHHHHHHHHhhcCCe
Confidence 3467777777777766666553333 345553 3566664433 4456877776642 12333333 244
Q ss_pred EEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 525 ~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
.|++=..--...|.++..-=-..++-+|++|++.+++
T Consensus 165 ~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~ 201 (397)
T 2zyj_A 165 FLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVE 201 (397)
T ss_dssp CEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEE
T ss_pred EEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 4433111112224433321112567788899988775
No 229
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=35.45 E-value=3.1e+02 Score=28.45 Aligned_cols=91 Identities=12% Similarity=0.229 Sum_probs=52.3
Q ss_pred HHHHHHHHhccC--CCEEEEeCCh---HHHHHHHHHHHHc-------------------CCeeEEEEeCCCCC-chHHHH
Q 006256 443 VIVKHAVTKIRD--GDVLLTYGSS---SAVEMILQHAHEL-------------------GKQFRVVIVDSRPK-HEGKLL 497 (653)
Q Consensus 443 ~Ia~~a~~~I~d--GdvILT~g~S---s~Ve~vL~~A~e~-------------------gk~f~ViV~ESRP~-~EG~~L 497 (653)
.|.+.+++.... +..+|.|+.+ .++..++.++... ...|.|+-+||.=. -|=.++
T Consensus 45 ~iLrea~~~f~~~~~~ialSfSGGKDStVLLhL~~kal~~~~~~~~~~~~~~~~~~~~p~~~ipvifiDTG~~FpET~ef 124 (308)
T 3fwk_A 45 ILINETFPKWSPLNGEISFSYNGGKDCQVLLLLYLSCLWEYYIVKLSQSQFDGKFHRFPLTKLPTVFIDHDDTFKTLENF 124 (308)
T ss_dssp HHHHHTTTTSCSSSSSEEEECCSSHHHHHHHHHHHHHHHHHHTCCE-----------------EEEECCCTTCCHHHHHH
T ss_pred HHHHHHHHHcccccCCEEEEecCChhHHHHHHHHHHHhhhhcccccccccccccccccCCCCccEEEEeCCCCCHHHHHH
Confidence 355666666654 6788888764 4555655555310 14789998887544 467777
Q ss_pred HHHHH-hCCCCEEEEccc-------hHHHHhh---hccEEEEcceeE
Q 006256 498 LRRLV-RKGLSCTYTHIN-------AISYIIH---EVTRVFLGASSV 533 (653)
Q Consensus 498 a~eL~-~~GI~vT~I~Ds-------Av~~iM~---~Vd~VllGAdaI 533 (653)
..++. +.|+++.++.-. +...+++ .++.+|.|.-+-
T Consensus 125 ~d~~~~~ygL~L~v~~p~~~~~~~~~cc~~~K~~P~~~AwitG~RR~ 171 (308)
T 3fwk_A 125 IEETSLRYSLSLYESDRDKCETMAEAFETFLQVFPETKAIVIGIRHT 171 (308)
T ss_dssp HHHHHHHTTEEEEECCTTSCCCHHHHHHHHHHHCTTCCEEECCCCTT
T ss_pred HHHHHHHhCCcEEEeCCCCCHHHHHHHHHHHHhCCCCCEEEEEeecC
Confidence 76664 468877665321 2233333 356777776554
No 230
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=35.43 E-value=91 Score=31.48 Aligned_cols=100 Identities=14% Similarity=0.149 Sum_probs=53.8
Q ss_pred CCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc--------------chHHHHh
Q 006256 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------------NAISYII 520 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D--------------sAv~~iM 520 (653)
..+++|-|.+.++..++..+.+.| -+|++. .|.+.+.. ..+...|..+..+.. ..+-..+
T Consensus 103 ~~i~~~~g~~~a~~~~~~~l~~~g--d~vl~~--~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l 176 (407)
T 3nra_A 103 DGLIITPGTQGALFLAVAATVARG--DKVAIV--QPDYFANR--KLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAF 176 (407)
T ss_dssp TSEEEESHHHHHHHHHHHTTCCTT--CEEEEE--ESCCTHHH--HHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHH
T ss_pred CcEEEeCCcHHHHHHHHHHhCCCC--CEEEEc--CCcccchH--HHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHH
Confidence 467777776677766665543333 345553 35555543 334456777766643 1233333
Q ss_pred h-hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 521 H-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 521 ~-~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
. +...|++ .+.--..|.++..----.++-+|+.|++.+++
T Consensus 177 ~~~~~~v~~-~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 217 (407)
T 3nra_A 177 KAGARVFLF-SNPNNPAGVVYSAEEIGQIAALAARYGATVIA 217 (407)
T ss_dssp HTTCCEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred hhCCcEEEE-cCCCCCCCcccCHHHHHHHHHHHHHcCCEEEE
Confidence 3 4555544 22222235444433345567788999987775
No 231
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}
Probab=34.72 E-value=34 Score=33.34 Aligned_cols=49 Identities=8% Similarity=-0.016 Sum_probs=29.5
Q ss_pred HHHhhh-ccEEEEcceeEecC---CCeecccchHHHHHHHhhCCCCeeeeccc
Q 006256 517 SYIIHE-VTRVFLGASSVLSN---GTVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (653)
Q Consensus 517 ~~iM~~-Vd~VllGAdaIlaN---G~V~NKiGT~~lAl~Ak~~~VPVyV~aet 565 (653)
..++.. +|.||--|-....+ -.-.|-.||..+.-+|+..++.-+|.+.+
T Consensus 57 ~~~~~~~~d~vih~a~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~~~v~~SS 109 (286)
T 3gpi_A 57 ASIVHLRPEILVYCVAASEYSDEHYRLSYVEGLRNTLSALEGAPLQHVFFVSS 109 (286)
T ss_dssp TTGGGGCCSEEEECHHHHHHC-----CCSHHHHHHHHHHTTTSCCCEEEEEEE
T ss_pred HHhhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEcc
Confidence 334444 77776544211111 11246789999999999999876665554
No 232
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=34.69 E-value=1.4e+02 Score=24.65 Aligned_cols=80 Identities=14% Similarity=0.116 Sum_probs=44.5
Q ss_pred CeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHH-Hhh--hccEEEEcceeEecCCCeecccchHHHHHHHh-h
Q 006256 479 KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISY-IIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAY-G 554 (653)
Q Consensus 479 k~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~-iM~--~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak-~ 554 (653)
...+|.++|..+.. ...+...|.+.|..+....+..-+. .+. ..|.||+..+-- + .-|--.+..+-+ .
T Consensus 6 ~~~~ilivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~--~-----~~g~~~~~~l~~~~ 77 (130)
T 3eod_A 6 VGKQILIVEDEQVF-RSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMP--R-----MNGLKLLEHIRNRG 77 (130)
T ss_dssp TTCEEEEECSCHHH-HHHHHHHHHHTTCEEEEESCHHHHHHHHTTCCCSEEEECCC------------CHHHHHHHHHTT
T ss_pred CCCeEEEEeCCHHH-HHHHHHHHHhCCceEEEeCCHHHHHHHHhcCCCCEEEEecCCC--C-----CCHHHHHHHHHhcC
Confidence 34577888776543 2334466777888777655433222 222 478888876532 2 223333433333 3
Q ss_pred CCCCeeeecccc
Q 006256 555 FHIPVLVCCEAY 566 (653)
Q Consensus 555 ~~VPVyV~aety 566 (653)
.++|+++++...
T Consensus 78 ~~~~ii~~t~~~ 89 (130)
T 3eod_A 78 DQTPVLVISATE 89 (130)
T ss_dssp CCCCEEEEECCC
T ss_pred CCCCEEEEEcCC
Confidence 479999988643
No 233
>2h1q_A Hypothetical protein; ZP_00559375.1, structural genomics, PSI-2, protein structure initiative; 2.01A {Desulfitobacterium hafniense dcb-2} PDB: 3l5o_A
Probab=34.50 E-value=96 Score=31.60 Aligned_cols=89 Identities=16% Similarity=0.215 Sum_probs=62.8
Q ss_pred cCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEccee
Q 006256 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASS 532 (653)
Q Consensus 453 ~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAda 532 (653)
..|..|..+|+-..+...+ .+.++|+|+|-.|.. |. +++.+.-++++++|.||+=..+
T Consensus 139 ~~g~kV~vIG~~P~i~~~l------~~~~~v~V~d~~p~~------------g~----~p~~~~e~ll~~aD~viiTGsT 196 (270)
T 2h1q_A 139 VKGKKVGVVGHFPHLESLL------EPICDLSILEWSPEE------------GD----YPLPASEFILPECDYVYITCAS 196 (270)
T ss_dssp TTTSEEEEESCCTTHHHHH------TTTSEEEEEESSCCT------------TC----EEGGGHHHHGGGCSEEEEETHH
T ss_pred cCCCEEEEECCCHHHHHHH------hCCCCEEEEECCCCC------------CC----CChHHHHHHhhcCCEEEEEeee
Confidence 3578999999987665433 235789999988862 32 3788899999999999987665
Q ss_pred EecCCCeecccchHHHHHHHhhCCCCeeeeccccccccc
Q 006256 533 VLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHER 571 (653)
Q Consensus 533 IlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~ 571 (653)
+. ||++ -..+.+ |+ ....++++.+|.-+.+.
T Consensus 197 lv-N~Ti-----~~lL~~-~~-~a~~vvl~GPS~p~~P~ 227 (270)
T 2h1q_A 197 VV-DKTL-----PRLLEL-SR-NARRITLVGPGTPLAPV 227 (270)
T ss_dssp HH-HTCH-----HHHHHH-TT-TSSEEEEESTTCCCCGG
T ss_pred ee-cCCH-----HHHHHh-Cc-cCCeEEEEecChhhhHH
Confidence 54 4432 222333 33 45699999999877775
No 234
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=34.47 E-value=1.9e+02 Score=29.22 Aligned_cols=113 Identities=7% Similarity=0.004 Sum_probs=55.9
Q ss_pred EEEEeCChHHHHHHHHHHHHcCCeeEEE-EeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcc-----
Q 006256 457 VLLTYGSSSAVEMILQHAHELGKQFRVV-IVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA----- 530 (653)
Q Consensus 457 vILT~g~Ss~Ve~vL~~A~e~gk~f~Vi-V~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGA----- 530 (653)
.|..+|.+..-...+....+....++++ |++..+. ....+ ..+.||.+....|-.-..--.++|.|++..
T Consensus 4 rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~-~~~~~---~~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h 79 (344)
T 3mz0_A 4 RIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQE-AAQKV---VEQYQLNATVYPNDDSLLADENVDAVLVTSWGPAH 79 (344)
T ss_dssp EEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHH-HHHHH---HHHTTCCCEEESSHHHHHHCTTCCEEEECSCGGGH
T ss_pred EEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHH-HHHHH---HHHhCCCCeeeCCHHHHhcCCCCCEEEECCCchhH
Confidence 4666777664433343333234456655 4444321 11112 123465555444422111112477777643
Q ss_pred ------------eeEecCCCeecccchHHHHHHHhhCCCCeeeeccccccccccc
Q 006256 531 ------------SSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQ 573 (653)
Q Consensus 531 ------------daIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~~ 573 (653)
+.++.-=-..+--....+.-+|+..++.++.++..+.|++.++
T Consensus 80 ~~~~~~al~~Gk~vl~EKP~a~~~~e~~~l~~~a~~~g~~~~~v~~~~r~~p~~~ 134 (344)
T 3mz0_A 80 ESSVLKAIKAQKYVFCEKPLATTAEGCMRIVEEEIKVGKRLVQVGFMRRYDSGYV 134 (344)
T ss_dssp HHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHHSSCCEEECCGGGGSHHHH
T ss_pred HHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHHCCEEEEEecccccCHHHH
Confidence 2233222233444455566678888888866666677766543
No 235
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=34.43 E-value=63 Score=31.51 Aligned_cols=70 Identities=17% Similarity=0.279 Sum_probs=42.8
Q ss_pred EEEEeCChHHHHHHHHHHHHcCC-eeEEEEe-CCCCCchHHHHHHHHHhCCCCEEEEcc----------chHHHHhh--h
Q 006256 457 VLLTYGSSSAVEMILQHAHELGK-QFRVVIV-DSRPKHEGKLLLRRLVRKGLSCTYTHI----------NAISYIIH--E 522 (653)
Q Consensus 457 vILT~g~Ss~Ve~vL~~A~e~gk-~f~ViV~-ESRP~~EG~~La~eL~~~GI~vT~I~D----------sAv~~iM~--~ 522 (653)
.||.-|+++.++.++. +.+++. .+.|.++ -.+|...|.+. ..+.|||+.++.. ..+...++ +
T Consensus 4 aVl~SG~Gs~L~aLi~-~~~~~~~~~~I~~Vvs~~~~~~~~~~---A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~ 79 (209)
T 1meo_A 4 AVLISGTGSNLQALID-STREPNSSAQIDIVISNKAAVAGLDK---AERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFS 79 (209)
T ss_dssp EEEESSSCTTHHHHHH-HHHSTTCSCEEEEEEESSTTCHHHHH---HHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHTT
T ss_pred EEEEECCchHHHHHHH-HHhcCCCCcEEEEEEeCCCChHHHHH---HHHcCCCEEEECccccCchhhhhHHHHHHHHhcC
Confidence 4777889999977665 444443 4555433 33455567543 4578999987642 23444444 5
Q ss_pred ccEEEEcc
Q 006256 523 VTRVFLGA 530 (653)
Q Consensus 523 Vd~VllGA 530 (653)
+|.+++-+
T Consensus 80 ~Dliv~a~ 87 (209)
T 1meo_A 80 IDIVCLAG 87 (209)
T ss_dssp CCEEEEES
T ss_pred CCEEEEcc
Confidence 78877644
No 236
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=34.35 E-value=1.4e+02 Score=30.58 Aligned_cols=99 Identities=16% Similarity=0.205 Sum_probs=53.7
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc---------------hHHHHh
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---------------AISYII 520 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds---------------Av~~iM 520 (653)
.+++|.|.+.++..+++.+.+.| -+|++.+ |.+.|...+ +...|+.+..+... .+..+-
T Consensus 103 ~v~~~~g~~~a~~~~~~~~~~~g--d~Vl~~~--p~y~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 176 (429)
T 1yiz_A 103 EVLVTVGAYEALYATIQGHVDEG--DEVIIIE--PFFDCYEPM--VKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELE 176 (429)
T ss_dssp SEEEESHHHHHHHHHHHHHCCTT--CEEEEEE--SCCTTHHHH--HHHTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHH
T ss_pred CEEEecChHHHHHHHHHHhcCCC--CEEEEcC--CCchhHHHH--HHHcCCEEEEEeCCcccccccccccCcccCHHHHH
Confidence 67888887788877776654333 3566654 666564433 44578887777421 122222
Q ss_pred h----hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 521 H----EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 521 ~----~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
. ++..|++- .---..|.++.+-=--.++-+|+.|++.+++
T Consensus 177 ~~l~~~~~~v~~~-~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 220 (429)
T 1yiz_A 177 ALFNEKTKMIIIN-TPHNPLGKVMDRAELEVVANLCKKWNVLCVS 220 (429)
T ss_dssp HHCCTTEEEEEEE-SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHhccCceEEEEC-CCCCCCCccCCHHHHHHHHHHHHHcCcEEEE
Confidence 2 34444442 2212234443322223466688999987665
No 237
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=34.31 E-value=1.6e+02 Score=29.77 Aligned_cols=101 Identities=14% Similarity=0.145 Sum_probs=53.0
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc-------hHHHHhh----h
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-------AISYIIH----E 522 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds-------Av~~iM~----~ 522 (653)
...+++|.|.+.++..+++.+.+.| -+|++.+ |.+.|... .+...|+.+..+... .+..+-. +
T Consensus 101 ~~~v~~~~g~t~al~~~~~~l~~~g--d~Vl~~~--~~~~~~~~--~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 174 (389)
T 1o4s_A 101 PDQVVVTNGAKQALFNAFMALLDPG--DEVIVFS--PVWVSYIP--QIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGK 174 (389)
T ss_dssp GGGEEEESHHHHHHHHHHHHHCCTT--CEEEEEE--SCCTTHHH--HHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCTT
T ss_pred HHHEEEecCHHHHHHHHHHHhCCCC--CEEEEcC--CCchhHHH--HHHHcCCEEEEEecCCccCCCCCHHHHHHhcccC
Confidence 3467778777778876666554333 3565543 44444332 344578888777532 1222222 2
Q ss_pred ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 523 Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
+.+|++ ..---..|.++..-=-..++-+|+.|++.+++
T Consensus 175 ~~~v~~-~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 212 (389)
T 1o4s_A 175 TKAVLI-NSPNNPTGVVYRREFLEGLVRLAKKRNFYIIS 212 (389)
T ss_dssp EEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred ceEEEE-cCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 333433 11111234443322234566788899987775
No 238
>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*
Probab=34.27 E-value=96 Score=29.76 Aligned_cols=99 Identities=12% Similarity=0.122 Sum_probs=48.2
Q ss_pred EEEeCChHHHHHHHH-HHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc--c-chHHHHhhhccEEEEcceeE
Q 006256 458 LLTYGSSSAVEMILQ-HAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH--I-NAISYIIHEVTRVFLGASSV 533 (653)
Q Consensus 458 ILT~g~Ss~Ve~vL~-~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~--D-sAv~~iM~~Vd~VllGAdaI 533 (653)
||..|-+..+..-|. .+.++...++|+++.-++.. ...|...++.+.... | ..+..++..+|.||--|-..
T Consensus 2 ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~-----~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~~ 76 (286)
T 2zcu_A 2 IAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAK-----AQALAAQGITVRQADYGDEAALTSALQGVEKLLLISSSE 76 (286)
T ss_dssp EEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTT-----CHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECC---
T ss_pred EEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHh-----hhhhhcCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCCCC
Confidence 566676555544333 33333114566666544322 123334555443221 1 34556666777777543211
Q ss_pred ecCCCeecccchHHHHHHHhhCCCCeeeeccc
Q 006256 534 LSNGTVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (653)
Q Consensus 534 laNG~V~NKiGT~~lAl~Ak~~~VPVyV~aet 565 (653)
.+ .|-.||..+.-+|+.++++-+|...+
T Consensus 77 -~~---~~~~~~~~l~~a~~~~~~~~~v~~Ss 104 (286)
T 2zcu_A 77 -VG---QRAPQHRNVINAAKAAGVKFIAYTSL 104 (286)
T ss_dssp ---------CHHHHHHHHHHHHTCCEEEEEEE
T ss_pred -ch---HHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 11 34567777777777777765554443
No 239
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=34.26 E-value=2.1e+02 Score=28.60 Aligned_cols=100 Identities=18% Similarity=0.260 Sum_probs=52.3
Q ss_pred CCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc--------hHHHHhh----h
Q 006256 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN--------AISYIIH----E 522 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds--------Av~~iM~----~ 522 (653)
..+++|.|.+.++..+++.+.+.| -+|++.+ |.+.+... .+...|+.+..+... .+..+-. +
T Consensus 79 ~~v~~~~g~~~a~~~~~~~~~~~g--d~Vl~~~--~~~~~~~~--~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~ 152 (381)
T 1v2d_A 79 ESVVVTSGATEALYVLLQSLVGPG--DEVVVLE--PFFDVYLP--DAFLAGAKARLVRLDLTPEGFRLDLSALEKALTPR 152 (381)
T ss_dssp GGEEEESSHHHHHHHHHHHHCCTT--CEEEEEE--SCCTTHHH--HHHHTTCEEEEEECEEETTEEECCHHHHHTTCCTT
T ss_pred hhEEEcCChHHHHHHHHHHhCCCC--CEEEEcC--CCchhHHH--HHHHcCCEEEEEeCCCCCccCCcCHHHHHHhcCcC
Confidence 357888777778877776664333 3555543 44444432 345578887777532 1222222 2
Q ss_pred ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 523 Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
+..|++- .---..|.++..-=-..++-+|+.|++.+++
T Consensus 153 ~~~v~~~-~~~nptG~~~~~~~l~~i~~~~~~~~~~li~ 190 (381)
T 1v2d_A 153 TRALLLN-TPMNPTGLVFGERELEAIARLARAHDLFLIS 190 (381)
T ss_dssp EEEEEEE-SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CEEEEEC-CCCCCCCCccCHHHHHHHHHHHHHcCCEEEE
Confidence 3334331 1111123333221124566788899987776
No 240
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=34.00 E-value=28 Score=35.31 Aligned_cols=81 Identities=7% Similarity=-0.007 Sum_probs=53.7
Q ss_pred eEEEEeCCCCCchHHHH-HHHHHhCCCCEEEEccchHH---HHhhhccEEEEcceeEecCCCeecccchHHHHHHHhh--
Q 006256 481 FRVVIVDSRPKHEGKLL-LRRLVRKGLSCTYTHINAIS---YIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG-- 554 (653)
Q Consensus 481 f~ViV~ESRP~~EG~~L-a~eL~~~GI~vT~I~DsAv~---~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~-- 554 (653)
-+|.++++..+.+|... ...|.+.|++|+++....+. .-+.+.|.||++ | +.. +.+.-.++..+.+.
T Consensus 5 ~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~~yDvIIl~-d-~~~-----~~l~~~~~~~L~~yV~ 77 (259)
T 3rht_A 5 TRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLAKQDLVILS-D-YPA-----ERMTAQAIDQLVTMVK 77 (259)
T ss_dssp -CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHHHTCSEEEEE-S-CCG-----GGBCHHHHHHHHHHHH
T ss_pred ceEEEECCCCchhHHHHHHHHHHhCCceEEEecccccccChhHHhcCCEEEEc-C-Ccc-----ccCCHHHHHHHHHHHH
Confidence 46777787766666654 57799999999999877663 467899999986 2 111 23444555555544
Q ss_pred CCCCeeeecccccc
Q 006256 555 FHIPVLVCCEAYKF 568 (653)
Q Consensus 555 ~~VPVyV~aetyKf 568 (653)
.|-=++++.....|
T Consensus 78 ~GGgLi~~gG~~s~ 91 (259)
T 3rht_A 78 AGCGLVMLGGWESY 91 (259)
T ss_dssp TTCEEEEECSTTSS
T ss_pred hCCeEEEecCcccc
Confidence 36677777654444
No 241
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=33.92 E-value=3.8e+02 Score=26.98 Aligned_cols=99 Identities=11% Similarity=0.062 Sum_probs=51.1
Q ss_pred EEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCC--CEEEEc-----------------cchHH
Q 006256 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGL--SCTYTH-----------------INAIS 517 (653)
Q Consensus 457 vILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI--~vT~I~-----------------DsAv~ 517 (653)
+++|-|-+.+++.++. +... .-+|++.+ +.+-|..+...+...|+ .+.++. ...+-
T Consensus 54 v~~~~sgt~a~~~~~~-~~~~--gd~vi~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~d~~~l~ 128 (379)
T 3ke3_A 54 VIIPGSGTYGMEAVAR-QLTI--DEDCLIIR--NGWFSYRWTQILEKGKFAKSSTVLTAERTEDTEAPKPFAPVDIETAV 128 (379)
T ss_dssp EEEESCHHHHHHHHHH-HHCT--TCEEEEEE--CSHHHHHHHHHHHHHCCSSEEEEEECEESSCCSSCCCEECCCHHHHH
T ss_pred EEEcCChhHHHHHHHH-hCCC--CCeEEEEe--CCchhHHHHHHHHHhCCCCceEEEeccccccccccCCCCCCCHHHHH
Confidence 4444454556766553 3333 34677765 44556655555555665 444442 12344
Q ss_pred HHhh--hccEEEEcceeEecCCCeecccc-hHHHHHHHhhCCCCeeee
Q 006256 518 YIIH--EVTRVFLGASSVLSNGTVCSRVG-TACVAMVAYGFHIPVLVC 562 (653)
Q Consensus 518 ~iM~--~Vd~VllGAdaIlaNG~V~NKiG-T~~lAl~Ak~~~VPVyV~ 562 (653)
..+. +...|++- +.=...| ++...+ --.++-+|+.|++.++|=
T Consensus 129 ~~i~~~~~~~v~~~-~~~~~~G-~~~~~~~l~~i~~~~~~~~~~li~D 174 (379)
T 3ke3_A 129 AKIKEDKSAIVYAP-HVETSSG-IILSEEYIKALSEAVHSVGGLLVID 174 (379)
T ss_dssp HHHHHHTCSEEEEE-SEETTTT-EECCHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHhhcCCcEEEEE-eecCCCc-eeCCHHHHHHHHHHHHHcCCEEEEE
Confidence 4443 45555441 1111234 333322 335777899999888764
No 242
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=33.90 E-value=2.7e+02 Score=28.35 Aligned_cols=89 Identities=13% Similarity=0.220 Sum_probs=51.1
Q ss_pred HHHHHHHhccC--CCEEEEeCC---hHHHHHHHHHHH-Hc------------------CCeeEEEEeCC-CCCchHHHHH
Q 006256 444 IVKHAVTKIRD--GDVLLTYGS---SSAVEMILQHAH-EL------------------GKQFRVVIVDS-RPKHEGKLLL 498 (653)
Q Consensus 444 Ia~~a~~~I~d--GdvILT~g~---Ss~Ve~vL~~A~-e~------------------gk~f~ViV~ES-RP~~EG~~La 498 (653)
|.+.+.+.... +.+++.++. |+++..++..+. +. +..+.|+.+++ ....|-.+++
T Consensus 41 il~~~~~~~~~~~~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg~~fpet~~fv 120 (306)
T 2wsi_A 41 LLSEIFVRWSPLNGEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQEETFPTLENFV 120 (306)
T ss_dssp HHHTTTTTSCSSSSSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCTTCCHHHHHHH
T ss_pred HHHHHHHHcccccCCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCCCCCHHHHHHH
Confidence 34444444432 467888865 456656665542 11 35577776665 4455677788
Q ss_pred HHHH-hCCCCEEEEcc---------chHHHHhh---hccEEEEccee
Q 006256 499 RRLV-RKGLSCTYTHI---------NAISYIIH---EVTRVFLGASS 532 (653)
Q Consensus 499 ~eL~-~~GI~vT~I~D---------sAv~~iM~---~Vd~VllGAda 532 (653)
.++. +.|+++..+.- .++-.+++ ..+.+|+|..+
T Consensus 121 ~~~~~~ygl~l~v~~~~~~~~~~l~~~~~~~~k~~p~~~aii~G~Rr 167 (306)
T 2wsi_A 121 LETSERYCLSLYESQRQSGASVNMADAFRDFIKIYPETEAIVIGIRH 167 (306)
T ss_dssp HHHHHHTTEEEEECCC-----CCHHHHHHHHHHHCTTCCEEECCCCC
T ss_pred HHHHHHcCCCEEEEeCCccccccHHHHHHHHHhhCCCCcEEEEEEec
Confidence 6664 57998876632 13333333 36788888644
No 243
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=33.86 E-value=1.6e+02 Score=24.27 Aligned_cols=56 Identities=16% Similarity=0.078 Sum_probs=36.4
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCC-CCchHHHHHHHHHhC----CCCEEEEccc
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSR-PKHEGKLLLRRLVRK----GLSCTYTHIN 514 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESR-P~~EG~~La~eL~~~----GI~vT~I~Ds 514 (653)
.|..|.+....... +..+.+ ..+.++++|-. |...|..+++.|.+. ++++.+++..
T Consensus 26 ~~~~v~~~~~~~~a---~~~l~~--~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~ 86 (133)
T 3nhm_A 26 GEFDCTTAADGASG---LQQALA--HPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGY 86 (133)
T ss_dssp TTSEEEEESSHHHH---HHHHHH--SCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESC
T ss_pred CCcEEEEECCHHHH---HHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCC
Confidence 45556666655433 222222 35778887754 778899999999875 6777777654
No 244
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=33.85 E-value=2.8e+02 Score=27.82 Aligned_cols=101 Identities=15% Similarity=0.105 Sum_probs=52.3
Q ss_pred CEEEEeCChHHHHHHHHHHHH-------cCCeeEEEEeCCCCCchHHHH-HHHHHh----------CCCCEEEEccchHH
Q 006256 456 DVLLTYGSSSAVEMILQHAHE-------LGKQFRVVIVDSRPKHEGKLL-LRRLVR----------KGLSCTYTHINAIS 517 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e-------~gk~f~ViV~ESRP~~EG~~L-a~eL~~----------~GI~vT~I~DsAv~ 517 (653)
.+++|-|.+.+++.+|+.+.. .|+. +|++.+ |.+.|..+ +..+.. .+..+..+.-..+.
T Consensus 98 ~v~~~~gg~~a~~~al~~~~~~~~~~~~~g~~-~vi~~~--~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 174 (406)
T 4adb_A 98 RVFFCNSGAEANEAALKLARKFAHDRYGSHKS-GIVAFK--NAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYNDIN 174 (406)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHHTCTTCC-EEEEET--TCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECTTCHH
T ss_pred eEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEC--CCcCCCcHHHhhccCCccccccCCCCCCCceEeCCCcHH
Confidence 677777777788777765543 3333 555543 23333222 122221 12355555322233
Q ss_pred HHhh----hccEEEEcceeEecCCCee--cccchHHHHHHHhhCCCCeee
Q 006256 518 YIIH----EVTRVFLGASSVLSNGTVC--SRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 518 ~iM~----~Vd~VllGAdaIlaNG~V~--NKiGT~~lAl~Ak~~~VPVyV 561 (653)
.+-. ++.+|++- -+...|+++ ..-=-..++-+|++|++.+++
T Consensus 175 ~l~~~l~~~~~~v~~~--p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~ 222 (406)
T 4adb_A 175 SASALIDDSTCAVIVE--PIQGEGGVVPASNAFLQGLRELCNRHNALLIF 222 (406)
T ss_dssp HHHTTCSTTEEEEEEC--SEETTTTSEECCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHhcCCeEEEEEe--CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 3322 33444443 356666655 444445677789999997775
No 245
>2r5f_A Transcriptional regulator, putative; transcription regulator, sugar-binding domain, structural GE PFAM04198, PSI-2; 2.10A {Pseudomonas syringae PV} SCOP: c.124.1.8
Probab=33.72 E-value=84 Score=31.37 Aligned_cols=100 Identities=16% Similarity=0.184 Sum_probs=52.5
Q ss_pred HHHHHHHhccCCCEEEEeC-ChHHHHHHHHHHHHcC--C-eeEEEEeC-CCC---CchHHHHHHHHHhC-CCCEEEEccc
Q 006256 444 IVKHAVTKIRDGDVLLTYG-SSSAVEMILQHAHELG--K-QFRVVIVD-SRP---KHEGKLLLRRLVRK-GLSCTYTHIN 514 (653)
Q Consensus 444 Ia~~a~~~I~dGdvILT~g-~Ss~Ve~vL~~A~e~g--k-~f~ViV~E-SRP---~~EG~~La~eL~~~-GI~vT~I~Ds 514 (653)
.+++..+.|.++++ |-.+ +++++..+..+..+.. + +.+|+-++ +-+ ...-..|.+.|.+. |+++.++.-.
T Consensus 47 aA~~l~~~l~~~~v-iGla~~G~T~~~~~~~l~~~~~~~~~v~~v~L~ggl~~~~~~~~~~~~~~la~~~~~~~~~l~~P 125 (264)
T 2r5f_A 47 AAHYLETSLSAQDH-IGISSWSSTIRAMVSHMHPQPGKQSAQEVVQLLGGVGNKGAFEATLLTQRLATLLNCPAFLLPSQ 125 (264)
T ss_dssp HHHHHHHHCCTTCE-EEECTTCHHHHHHHHTCCC--CCCCCSEEEECEECCC--CHHHHHHHHHHHHHHHTSCEECCCCC
T ss_pred HHHHHHHhCCCCCE-EEECcchHHHHHHHHhhccccCCCCCcEEEECCCCCCCccccCHHHHHHHHHHHhCCeeEEeeCC
Confidence 34455556777665 6667 9999988777664322 3 56666444 322 22334566777654 7776543221
Q ss_pred ----------------hHHHHh---hhccEEEEcceeEecCCCeecccch
Q 006256 515 ----------------AISYII---HEVTRVFLGASSVLSNGTVCSRVGT 545 (653)
Q Consensus 515 ----------------Av~~iM---~~Vd~VllGAdaIlaNG~V~NKiGT 545 (653)
.+..++ .++|..|+|-=...+||.++| -|+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~Di~l~GIG~~~~~~~i~~-~g~ 174 (264)
T 2r5f_A 126 SIEQSVESKQRIVEMEEVKEVLHRFDSITLAIVGIGELEPSQLLRN-SGN 174 (264)
T ss_dssp ----------CCHHHHHHHHHHHHTTTCCEEEECCEECC-----------
T ss_pred cccCCHHHHHHHHcChHHHHHHHHHhcCCEEEEecCCCCCCccHhh-cCC
Confidence 122222 269999999888777899976 575
No 246
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=33.71 E-value=1.1e+02 Score=28.69 Aligned_cols=55 Identities=15% Similarity=0.285 Sum_probs=35.1
Q ss_pred EEEEeCChHHHHHHHHHHHHcC-CeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc
Q 006256 457 VLLTYGSSSAVEMILQHAHELG-KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (653)
Q Consensus 457 vILT~g~Ss~Ve~vL~~A~e~g-k~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~ 512 (653)
+|.||.....+...|....++. ..++|||+|...-.+-..+++++.. .-.++++.
T Consensus 6 iIp~yn~~~~l~~~l~Sl~~q~~~~~eiivvDd~S~d~t~~~~~~~~~-~~~i~~i~ 61 (255)
T 1qg8_A 6 IMTSYNKSDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLN-DNRVRFYQ 61 (255)
T ss_dssp EEEESSCTTTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGG-STTEEEEE
T ss_pred EEEcCCCHHHHHHHHHHHHhccCCceEEEEEECCCCchHHHHHHHHhh-cCCEEEEe
Confidence 4556666677777777766543 4688888876655555555555544 45666664
No 247
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=33.70 E-value=2.9e+02 Score=28.71 Aligned_cols=98 Identities=13% Similarity=-0.080 Sum_probs=54.4
Q ss_pred EEEEeCChHHHHHHHHHHHH--------cC---CeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc------hHHHH
Q 006256 457 VLLTYGSSSAVEMILQHAHE--------LG---KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN------AISYI 519 (653)
Q Consensus 457 vILT~g~Ss~Ve~vL~~A~e--------~g---k~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds------Av~~i 519 (653)
.++|-|.+.++...|..+.. .| .+.+|++.+ .+ ..+.+.+...|+.+.+|... -+..+
T Consensus 106 ~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~---~h--~~~~~~~~~~G~~v~~v~~~~~~~~~d~~~l 180 (452)
T 2dgk_A 106 GTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP---VQ--ICWHKFARYWDVELREIPMRPGQLFMDPKRM 180 (452)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS---CC--HHHHHHHHHTTCEEEECCCBTTBCSCCHHHH
T ss_pred eEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC---Cc--HHHHHHHHHcCceEEEEecCCCCCeECHHHH
Confidence 67777777766555554432 34 234677755 22 22234445579988888532 12222
Q ss_pred ---hhhccEEEEcceeEecCCCeecccchHHHHHHHhhC------CCCeeee
Q 006256 520 ---IHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGF------HIPVLVC 562 (653)
Q Consensus 520 ---M~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~------~VPVyV~ 562 (653)
+.+-+++|+....-...|.+.. --.|+-+|++| ++.|+|=
T Consensus 181 ~~~i~~~t~~v~~~~~~n~tG~~~~---l~~I~~ia~~~~~~~~~~~~l~vD 229 (452)
T 2dgk_A 181 IEACDENTIGVVPTFGVTYTGNYEF---PQPLHDALDKFQADTGIDIDMHID 229 (452)
T ss_dssp HHHCCTTEEEEECBBSCTTTCBBCC---HHHHHHHHHHHHHHHCCCCCEEEE
T ss_pred HHHHhhCCEEEEEEcCCcCCcccCC---HHHHHHHHHHHhhccCCCCcEEEE
Confidence 2222455555555455565532 24566777774 8888773
No 248
>3npg_A Uncharacterized DUF364 family protein; protein with unknown function from DUF364 family, structural genomics; 2.70A {Pyrococcus horikoshii}
Probab=33.69 E-value=85 Score=31.49 Aligned_cols=96 Identities=16% Similarity=0.111 Sum_probs=63.2
Q ss_pred cCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEccee
Q 006256 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASS 532 (653)
Q Consensus 453 ~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAda 532 (653)
..+..|..+|+-..+...|+ .+ ++|+|+|=.|.+-|.. ...|..-.++++++|.||+=..+
T Consensus 114 ~~~~kV~vIG~~p~l~~~l~-----~~-~~v~V~d~~p~~~~~~-------------~~~~~~e~~~l~~~D~v~iTGsT 174 (249)
T 3npg_A 114 DEIKRIAIIGNMPPVVRTLK-----EK-YEVYVFERNMKLWDRD-------------TYSDTLEYHILPEVDGIIASASC 174 (249)
T ss_dssp SCCSEEEEESCCHHHHHHHT-----TT-SEEEEECCSGGGCCSS-------------EECGGGHHHHGGGCSEEEEETTH
T ss_pred cCCCEEEEECCCHHHHHHHh-----cc-CCEEEEECCCcccCCC-------------CCChhHHHhhhccCCEEEEEeee
Confidence 35689999999886533332 23 8999999999864421 12565555799999999986655
Q ss_pred EecCCCeecccchHHHHHHHhhCCCCeeeeccccccccccccC
Q 006256 533 VLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLD 575 (653)
Q Consensus 533 IlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~~~d 575 (653)
+. ||++ -..+.+ |+ ....++++.+|.-+.+..-.+
T Consensus 175 lv-N~Ti-----~~lL~~-~~-~~~~vvl~GPS~~~~P~~~~~ 209 (249)
T 3npg_A 175 IV-NGTL-----DMILDR-AK-KAKLIVITGPTGQLLPEFLKG 209 (249)
T ss_dssp HH-HTCH-----HHHHHH-CS-SCSEEEEESGGGCSCGGGGTT
T ss_pred ec-cCCH-----HHHHHh-Cc-ccCeEEEEecCchhhHHHHhh
Confidence 54 4332 222222 23 345789999998888776433
No 249
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=33.57 E-value=1.3e+02 Score=31.39 Aligned_cols=96 Identities=16% Similarity=0.213 Sum_probs=51.5
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHH-HH-HH-HHhCCCCEEEEccchHHHH---hh-hccEEEE
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKL-LL-RR-LVRKGLSCTYTHINAISYI---IH-EVTRVFL 528 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~-La-~e-L~~~GI~vT~I~DsAv~~i---M~-~Vd~Vll 528 (653)
+.|++-+.+.++.. +....+.| -+|++. .|.+.|.. +. .. +...|+.++++....+..+ +. ++.+|++
T Consensus 84 ~~~~~~sG~~Ai~~-~~~l~~~g--d~Vi~~--~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~ 158 (400)
T 3nmy_A 84 RAFAFASGMAATST-VMELLDAG--SHVVAM--DDLYGGTFRLFERVRRRTAGLDFSFVDLTDPAAFKAAIRADTKMVWI 158 (400)
T ss_dssp EEEEESSHHHHHHH-HHTTSCTT--CEEEEE--SSCCHHHHHHHHHTHHHHHCCEEEEECTTSHHHHHHHCCTTEEEEEE
T ss_pred CEEEecCHHHHHHH-HHHHcCCC--CEEEEe--CCCchHHHHHHHHhhHhhcCeEEEEECCCCHHHHHHHhccCCCEEEE
Confidence 34444444455644 33333233 356654 35565443 33 33 5667999999874433333 32 3444444
Q ss_pred cceeEe-cCCCeecccchHHHHHHHhhCCCCeee
Q 006256 529 GASSVL-SNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 529 GAdaIl-aNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
+.+. ..|.+.. --.++-+|++|+++++|
T Consensus 159 --e~~~np~G~~~~---l~~i~~la~~~g~~liv 187 (400)
T 3nmy_A 159 --ETPTNPMLKLVD---IAAIAVIARKHGLLTVV 187 (400)
T ss_dssp --ESSCTTTCCCCC---HHHHHHHHHHTTCEEEE
T ss_pred --ECCCCCCCeeec---HHHHHHHHHHcCCEEEE
Confidence 2232 2344443 45677889999998876
No 250
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=33.54 E-value=1.4e+02 Score=23.93 Aligned_cols=77 Identities=17% Similarity=0.186 Sum_probs=43.2
Q ss_pred eEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHH--HHhh-hccEEEEcceeEecCCCeecccchHHHHHHHhhCCC
Q 006256 481 FRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAIS--YIIH-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHI 557 (653)
Q Consensus 481 f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~--~iM~-~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~V 557 (653)
.+|+|+|..+.. ...+...|...|+.+....+..-+ .+.. ..|.||+..+ +.+. -|--.+..+.+...+
T Consensus 2 ~~ilivdd~~~~-~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~D~~--l~~~-----~g~~~~~~l~~~~~~ 73 (121)
T 1zh2_A 2 TNVLIVEDEQAI-RRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLG--LPDG-----DGIEFIRDLRQWSAV 73 (121)
T ss_dssp CEEEEECSCHHH-HHHHHHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEEESE--ETTE-----EHHHHHHHHHTTCCC
T ss_pred cEEEEEeCCHHH-HHHHHHHHhcCCCEEEEeCCHHHHHHHHhcCCCCEEEEeCC--CCCC-----cHHHHHHHHHhCCCC
Confidence 357777776543 233445667778877655543222 2222 4788888543 3321 243344444455679
Q ss_pred Ceeeeccc
Q 006256 558 PVLVCCEA 565 (653)
Q Consensus 558 PVyV~aet 565 (653)
|+++++..
T Consensus 74 ~ii~~s~~ 81 (121)
T 1zh2_A 74 PVIVLSAR 81 (121)
T ss_dssp CEEEEESC
T ss_pred cEEEEECC
Confidence 99988764
No 251
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=33.12 E-value=1.4e+02 Score=24.16 Aligned_cols=78 Identities=17% Similarity=0.218 Sum_probs=43.4
Q ss_pred eEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHH-HHhh--hccEEEEcceeEecCCCeecccchHHHHHHHhhCCC
Q 006256 481 FRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAIS-YIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHI 557 (653)
Q Consensus 481 f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~-~iM~--~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~V 557 (653)
.+|+|+|..+.. ...+...|...|..+....+..-+ ..+. ..|.||+..+ +.+. -|...+..+.+...+
T Consensus 3 ~~ilivdd~~~~-~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~--l~~~-----~g~~~~~~l~~~~~~ 74 (122)
T 1zgz_A 3 HHIVIVEDEPVT-QARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDIN--LPDE-----NGLMLTRALRERSTV 74 (122)
T ss_dssp CEEEEECSSHHH-HHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSS-----CHHHHHHHHHTTCCC
T ss_pred cEEEEEECCHHH-HHHHHHHHHHCCCeEEEecCHHHHHHHHhcCCCCEEEEeCC--CCCC-----ChHHHHHHHHhcCCC
Confidence 357777766543 233445666778777655543222 2222 4788888543 3322 243444444445678
Q ss_pred Ceeeecccc
Q 006256 558 PVLVCCEAY 566 (653)
Q Consensus 558 PVyV~aety 566 (653)
|+++++...
T Consensus 75 ~ii~~s~~~ 83 (122)
T 1zgz_A 75 GIILVTGRS 83 (122)
T ss_dssp EEEEEESSC
T ss_pred CEEEEECCC
Confidence 998887643
No 252
>2z1d_A Hydrogenase expression/formation protein HYPD; [NIFE] hydrogenase maturation, [4Fe-4S] cluster, thiol redox binding protein; HET: CSW; 2.07A {Thermococcus kodakarensis}
Probab=33.06 E-value=58 Score=34.82 Aligned_cols=51 Identities=16% Similarity=0.223 Sum_probs=42.8
Q ss_pred EEEccchHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeec
Q 006256 509 TYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (653)
Q Consensus 509 T~I~DsAv~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~a 563 (653)
...+..++.++|..=+ .-|.++.=|.|..-+|+-.---+|.+|++|++|..
T Consensus 177 h~l~pPa~~all~~~~----~idgfi~PGHVstIiG~~~y~~l~~~y~~P~VVaG 227 (372)
T 2z1d_A 177 HRLTPPAVEVLLKQGT----VFQGLIAPGHVSTIIGVKGWEYLTEKYGIPQVVAG 227 (372)
T ss_dssp EECHHHHHHHHHHTSC----CCSEEEEEHHHHHHHTTHHHHHHHHHHCCCEEEEC
T ss_pred ccccHHHHHHHHcCCC----cCcEEEecCeeeEEeccchhHHHHHHcCCCEEEcC
Confidence 3445678888887655 66888888999999999999999999999998865
No 253
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=32.91 E-value=1.1e+02 Score=30.20 Aligned_cols=75 Identities=21% Similarity=0.229 Sum_probs=42.1
Q ss_pred EEEeCChHHHHHHHHHHHHcCCeeEEE-EeCCCCCchHHHHHHHHHhCCCCEEEEcc----------chHHHHhh--hcc
Q 006256 458 LLTYGSSSAVEMILQHAHELGKQFRVV-IVDSRPKHEGKLLLRRLVRKGLSCTYTHI----------NAISYIIH--EVT 524 (653)
Q Consensus 458 ILT~g~Ss~Ve~vL~~A~e~gk~f~Vi-V~ESRP~~EG~~La~eL~~~GI~vT~I~D----------sAv~~iM~--~Vd 524 (653)
||..|.++....+|....+....++|. |+-.+|...|.+. ..+.|||+.++.. ..+...++ ++|
T Consensus 27 ~l~SG~g~~~~~~l~~l~~~~~~~~I~~Vvt~~~~~~~~~~---A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~D 103 (229)
T 3auf_A 27 VLISGSGTNLQAILDGCREGRIPGRVAVVISDRADAYGLER---ARRAGVDALHMDPAAYPSRTAFDAALAERLQAYGVD 103 (229)
T ss_dssp EEESSCCHHHHHHHHHHHTTSSSEEEEEEEESSTTCHHHHH---HHHTTCEEEECCGGGSSSHHHHHHHHHHHHHHTTCS
T ss_pred EEEeCCcHHHHHHHHHHHhCCCCCeEEEEEcCCCchHHHHH---HHHcCCCEEEECcccccchhhccHHHHHHHHhcCCC
Confidence 344488888777776655432234443 2223465555443 4568999987642 23334444 578
Q ss_pred EEEEcce-eEec
Q 006256 525 RVFLGAS-SVLS 535 (653)
Q Consensus 525 ~VllGAd-aIla 535 (653)
.+|+-+- .|+.
T Consensus 104 liv~agy~~IL~ 115 (229)
T 3auf_A 104 LVCLAGYMRLVR 115 (229)
T ss_dssp EEEESSCCSCCC
T ss_pred EEEEcChhHhCC
Confidence 8877433 4443
No 254
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=32.69 E-value=1e+02 Score=31.44 Aligned_cols=100 Identities=15% Similarity=0.099 Sum_probs=52.2
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCC-EEEEccchH-HHH--h---hhccEE
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLS-CTYTHINAI-SYI--I---HEVTRV 526 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~-vT~I~DsAv-~~i--M---~~Vd~V 526 (653)
...+++|-|.+.++.. +..+...| -+|++. .|.+.|... .+...|+. +.++....- .+. + .++..|
T Consensus 95 ~~~v~~~~G~~~al~~-~~~~~~~g--d~Vl~~--~p~y~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~v 167 (400)
T 3asa_A 95 AKEIFISDGAKVDLFR-LLSFFGPN--QTVAIQ--DPSYPAYLD--IARLTGAKEIIALPCLQENAFFPEFPEDTHIDIL 167 (400)
T ss_dssp GGGEEEESCHHHHHHH-HHHHHCSS--CEEEEE--ESCCHHHHH--HHHHTTCSEEEEEECCGGGTTCCCCCTTCCCSEE
T ss_pred HHHEEEccChHHHHHH-HHHHcCCC--CEEEEC--CCCcHHHHH--HHHHcCCcceEecccchhcCcccChhhccCccEE
Confidence 4467888887777755 44444333 356654 366766543 34557888 777753211 111 1 234455
Q ss_pred EEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 527 FLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 527 llGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
++- ..-...|.++..-=-..++-+|++|++.+++
T Consensus 168 ~l~-~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 201 (400)
T 3asa_A 168 CLC-SPNNPTGTVLNKDQLRAIVHYAIEHEILILF 201 (400)
T ss_dssp EEE-SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred EEe-CCCCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 552 2112224443321122466678999986664
No 255
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=32.67 E-value=1.2e+02 Score=30.57 Aligned_cols=100 Identities=13% Similarity=0.139 Sum_probs=54.1
Q ss_pred CCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc----------------hHHH
Q 006256 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN----------------AISY 518 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds----------------Av~~ 518 (653)
..+++|.|.+.++..+++.+.+.|. +|++. .|.+.+... .+...|..+..+... .+..
T Consensus 86 ~~i~~~~g~~~a~~~~~~~~~~~gd--~vl~~--~p~~~~~~~--~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~ 159 (410)
T 3e2y_A 86 EEILVAVGAYGSLFNSIQGLVDPGD--EVIIM--VPFYDCYEP--MVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRE 159 (410)
T ss_dssp TSEEEESHHHHHHHHHHHHHCCTTC--EEEEE--ESCCTTHHH--HHHHTTCEEEEEECEECCCCSSCCBGGGEECCHHH
T ss_pred CCEEEeCCcHHHHHHHHHHhcCCCC--EEEEe--CCCchhhHH--HHHHcCCEEEEEeccccccccccccccCCcCCHHH
Confidence 4688888877888777766644343 45553 455544432 344568777666422 1222
Q ss_pred Hhh----hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 519 IIH----EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 519 iM~----~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
+-. ++.+|++- .---..|.++.+---..++-+|+.|++.+++
T Consensus 160 l~~~~~~~~~~v~~~-~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 205 (410)
T 3e2y_A 160 LESKFSSKTKAIILN-TPHNPLGKVYTRQELQVIADLCVKHDTLCIS 205 (410)
T ss_dssp HHTTCCTTEEEEEEE-SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHhhcCCCceEEEEe-CCCCCCCcCcCHHHHHHHHHHHHHcCcEEEE
Confidence 222 34444432 1112234444333344567788999987775
No 256
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=32.55 E-value=2.8e+02 Score=27.86 Aligned_cols=96 Identities=9% Similarity=0.004 Sum_probs=52.3
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc---chHHHHhh-------hccE
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---NAISYIIH-------EVTR 525 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D---sAv~~iM~-------~Vd~ 525 (653)
+.|++-+.+.++..+++.+.+.| -.|++.+ |.+.+. ...+...|+++..+.. ..+-..+. ++.+
T Consensus 107 ~~i~~~sGs~a~~~~~~~~~~~g--d~v~~~~--~~~~~~--~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~ 180 (401)
T 1fc4_A 107 DAILYSSCFDANGGLFETLLGAE--DAIISDA--LNHASI--IDGVRLCKAKRYRYANNDMQELEARLKEAREAGARHVL 180 (401)
T ss_dssp EEEEESCHHHHHHTTHHHHCCTT--CEEEEET--TCCHHH--HHHHHTSCSEEEEECTTCHHHHHHHHHHHHHTTCSSEE
T ss_pred cEEEeCChHHHHHHHHHHHcCCC--CEEEEcc--hhHHHH--HHHHHHcCCceEEECCCCHHHHHHHHHHhhccCCCceE
Confidence 45555444556655555543333 3555533 444332 2345678998888752 23444444 2445
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 526 VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
|++ ..---..|.+.. -..++-+|+.|++.+++
T Consensus 181 v~~-~~~~nptG~~~~---~~~i~~l~~~~~~~li~ 212 (401)
T 1fc4_A 181 IAT-DGVFSMDGVIAN---LKGVCDLADKYDALVMV 212 (401)
T ss_dssp EEE-ESEETTTTEECC---HHHHHHHHHHTTEEEEE
T ss_pred EEE-eCCcCCCCCCCC---HHHHHHHHHHcCCEEEE
Confidence 544 333334565555 46677889999986665
No 257
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=32.39 E-value=2.9e+02 Score=27.63 Aligned_cols=99 Identities=17% Similarity=0.155 Sum_probs=51.7
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc------hHHHHhh----hccE
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN------AISYIIH----EVTR 525 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds------Av~~iM~----~Vd~ 525 (653)
.+++|.|.+.++..+++.+.+.| -+|++.+ |.+.+... .+...|+.+..+... .+..+-. ++..
T Consensus 93 ~v~~~~g~~~a~~~~~~~~~~~g--d~vl~~~--p~~~~~~~--~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~ 166 (386)
T 1u08_A 93 DITVTAGATEALYAAITALVRNG--DEVICFD--PSYDSYAP--AIALSGGIVKRMALQPPHFRVDWQEFAALLSERTRL 166 (386)
T ss_dssp TEEEESSHHHHHHHHHHHHCCTT--CEEEEEE--SCCTTHHH--HHHHTTCEEEEEECCTTTCCCCHHHHHHHCCTTEEE
T ss_pred CEEEcCChHHHHHHHHHHhCCCC--CEEEEeC--CCchhHHH--HHHHcCCEEEEeecCcccCcCCHHHHHHhhcccCEE
Confidence 67888887778876666554333 3566543 44545332 345578888777521 1222222 3344
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 526 VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
|++- .---..|.++..-=-..++-+|++|++.+++
T Consensus 167 v~l~-~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 201 (386)
T 1u08_A 167 VILN-TPHNPSATVWQQADFAALWQAIAGHEIFVIS 201 (386)
T ss_dssp EEEE-SSCTTTCCCCCHHHHHHHHHHHTTSCCEEEE
T ss_pred EEEe-CCCCCCCccCCHHHHHHHHHHHHHcCcEEEE
Confidence 4431 1111223333221114566788999987665
No 258
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=32.23 E-value=1.1e+02 Score=31.32 Aligned_cols=105 Identities=14% Similarity=0.183 Sum_probs=53.3
Q ss_pred cCCCEEEEeCChHHHH--HHHHHHHH--cCC-------eeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc-------c
Q 006256 453 RDGDVLLTYGSSSAVE--MILQHAHE--LGK-------QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-------N 514 (653)
Q Consensus 453 ~dGdvILT~g~Ss~Ve--~vL~~A~e--~gk-------~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D-------s 514 (653)
....+++|-|.+.++. .+++.... .|. .-+|++.+ |.+.+...+ +...|+.+..+.. .
T Consensus 86 ~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~--p~y~~~~~~--~~~~g~~~~~v~~~~~g~d~~ 161 (423)
T 3ez1_A 86 KAENVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTV--PGYDRHFLL--LQTLGFELLTVDMQSDGPDVD 161 (423)
T ss_dssp CGGGEEECSSCHHHHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEE--SCCHHHHHH--HHHHTCEEEEEEEETTEECHH
T ss_pred ChhhEEEeCCcHHHHHHHHHHHHHhccCCCccccccCCCCEEEEcC--CCcHHHHHH--HHHcCCEEEeccCCCCCCCHH
Confidence 3447788888887875 44444443 221 24566543 666665443 4445777766532 2
Q ss_pred hHHHHhh---hccEEEEcceeEecCCCeecccchHHHHHHH-hhCCCCeee
Q 006256 515 AISYIIH---EVTRVFLGASSVLSNGTVCSRVGTACVAMVA-YGFHIPVLV 561 (653)
Q Consensus 515 Av~~iM~---~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~A-k~~~VPVyV 561 (653)
.+-..+. ++.+|++=...=-..|.++..---..++-+| ++|++.+++
T Consensus 162 ~l~~~l~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~ 212 (423)
T 3ez1_A 162 AVERLAGTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFA 212 (423)
T ss_dssp HHHHHHHSCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEE
T ss_pred HHHHHHhhCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEE
Confidence 3444442 3333332211112234444333323556666 888886654
No 259
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=31.89 E-value=80 Score=30.99 Aligned_cols=75 Identities=13% Similarity=0.234 Sum_probs=43.5
Q ss_pred EEEEeCChHHHHHHHHHHHHcCC-eeEEE-EeCCCCCchHHHHHHHHHhCCCCEEEEcc----------chHHHHhh--h
Q 006256 457 VLLTYGSSSAVEMILQHAHELGK-QFRVV-IVDSRPKHEGKLLLRRLVRKGLSCTYTHI----------NAISYIIH--E 522 (653)
Q Consensus 457 vILT~g~Ss~Ve~vL~~A~e~gk-~f~Vi-V~ESRP~~EG~~La~eL~~~GI~vT~I~D----------sAv~~iM~--~ 522 (653)
.||.-|+++.++.+|. +.+.|. ..+|. |+-.+|...+.+. -.+.|||+.++.. ..+...++ +
T Consensus 6 avl~Sg~Gsnl~ali~-~~~~~~l~~eI~~Visn~~~a~v~~~---A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~ 81 (211)
T 3p9x_A 6 AIFASGSGTNAEAIIQ-SQKAGQLPCEVALLITDKPGAKVVER---VKVHEIPVCALDPKTYPSKEAYEIEVVQQLKEKQ 81 (211)
T ss_dssp EEECCTTCHHHHHHHH-HHHTTCCSSEEEEEEESCSSSHHHHH---HHTTTCCEEECCGGGSSSHHHHHHHHHHHHHHTT
T ss_pred EEEEeCCchHHHHHHH-HHHcCCCCcEEEEEEECCCCcHHHHH---HHHcCCCEEEeChhhcCchhhhHHHHHHHHHhcC
Confidence 4677788899977655 444453 23333 2234665544443 3567999987753 23444454 5
Q ss_pred ccEEEEcc-eeEec
Q 006256 523 VTRVFLGA-SSVLS 535 (653)
Q Consensus 523 Vd~VllGA-daIla 535 (653)
+|.+++-+ -.|+.
T Consensus 82 ~Dliv~agy~~Il~ 95 (211)
T 3p9x_A 82 IDFVVLAGYMRLVG 95 (211)
T ss_dssp CCEEEESSCCSCCC
T ss_pred CCEEEEeCchhhcC
Confidence 88887744 34443
No 260
>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis}
Probab=31.58 E-value=81 Score=34.22 Aligned_cols=95 Identities=12% Similarity=0.106 Sum_probs=50.6
Q ss_pred HHHHHhccCCCEEEEeCChHHHHHHHHHHHHc---CCeeEEEEeCC-CC----------------CchHHHHHHHHHhCC
Q 006256 446 KHAVTKIRDGDVLLTYGSSSAVEMILQHAHEL---GKQFRVVIVDS-RP----------------KHEGKLLLRRLVRKG 505 (653)
Q Consensus 446 ~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~---gk~f~ViV~ES-RP----------------~~EG~~La~eL~~~G 505 (653)
+.|+++|++||+|.+.+....=..++....++ -+.++++..-+ .+ ++.|.. .+++.+.|
T Consensus 19 eEAv~~IkdGd~V~~~g~~g~P~~L~~ALa~r~~~l~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~r~~i~~G 97 (434)
T 3eh7_A 19 EEAVKHIKNGERVALSHAAGVPQSCVDALVQQADLFQNVEIYHMLCLGEGKYMAPEMAPHFRHITNFVGGN-SRKAVEEN 97 (434)
T ss_dssp HHHHTTCCTTCEEEECCGGGCCHHHHHHHHHSTTTC--CEEECCBCTTCC------------------------------
T ss_pred HHHHHhCCCcCEEEECCccCCHHHHHHHHHHhHhhcCCeEEEEeccCCchhhcChhhhCeEEEecCcCCHH-HHHHHHCC
Confidence 45667899999999998543222223333322 24566653221 11 112211 23344444
Q ss_pred -CCEEEEccchHHHHhh----hccEEEEcceeEecCCCeec
Q 006256 506 -LSCTYTHINAISYIIH----EVTRVFLGASSVLSNGTVCS 541 (653)
Q Consensus 506 -I~vT~I~DsAv~~iM~----~Vd~VllGAdaIlaNG~V~N 541 (653)
+.+.-+..+.+..++. .+|.+|+.|...-.+|.+.-
T Consensus 98 ~~~~~p~~ls~~~~~~~~g~~~~DVAli~as~~D~~Gn~s~ 138 (434)
T 3eh7_A 98 RADFIPVFFYEVPSMIRKDILHIDVAIVQLSMPDENGYCSF 138 (434)
T ss_dssp CTTCCCCCGGGHHHHHHTTSSCCSEEEEEECCCCTTSEEEC
T ss_pred CccccChhHHHHHHHHHhCCCCCcEEEEEEecCCCCCCEEe
Confidence 3333345677777776 48999999999999998864
No 261
>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}
Probab=31.49 E-value=1.4e+02 Score=31.80 Aligned_cols=112 Identities=13% Similarity=0.058 Sum_probs=60.5
Q ss_pred CCCEEEEeCChHHHHHH-HHHHHHcCC-eeEEEEeCCCCCch-HHH-H-----------H---HHHHhCCCCEEEEcc--
Q 006256 454 DGDVLLTYGSSSAVEMI-LQHAHELGK-QFRVVIVDSRPKHE-GKL-L-----------L---RRLVRKGLSCTYTHI-- 513 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~v-L~~A~e~gk-~f~ViV~ESRP~~E-G~~-L-----------a---~eL~~~GI~vT~I~D-- 513 (653)
.+.+||..|-+.-|... ++.+.+.+. ..+|+++.-++..+ ... + . ..+...++.+.....
T Consensus 72 ~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~~ 151 (478)
T 4dqv_A 72 ELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRLEVVAGDKSE 151 (478)
T ss_dssp CCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHHHHHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEECCTTS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcHHHHHHHHHHHHhcchhhhhhhhhhccCceEEEEeECCC
Confidence 56788888876555433 344444432 36788876544322 111 1 0 111123443332211
Q ss_pred -------chHHHHhhhccEEEEcceeEecCC----CeecccchHHHHHHHhhCCCCeeeeccc
Q 006256 514 -------NAISYIIHEVTRVFLGASSVLSNG----TVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (653)
Q Consensus 514 -------sAv~~iM~~Vd~VllGAdaIlaNG----~V~NKiGT~~lAl~Ak~~~VPVyV~aet 565 (653)
..+..++.++|.||--|-.+-.+. --.|-.||..++-+|+.+++.-+|...+
T Consensus 152 ~~~gld~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~~V~iSS 214 (478)
T 4dqv_A 152 PDLGLDQPMWRRLAETVDLIVDSAAMVNAFPYHELFGPNVAGTAELIRIALTTKLKPFTYVST 214 (478)
T ss_dssp GGGGCCHHHHHHHHHHCCEEEECCSSCSBSSCCEEHHHHHHHHHHHHHHHTSSSCCCEEEEEE
T ss_pred cccCCCHHHHHHHHcCCCEEEECccccCCcCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEee
Confidence 246667778888876543221110 1147789999999999999854444443
No 262
>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*
Probab=31.44 E-value=1.7e+02 Score=27.15 Aligned_cols=106 Identities=11% Similarity=0.042 Sum_probs=62.1
Q ss_pred CCCEEEEeCChHHHHHH-HHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEE--cc-chHHHHhhhccEEEEc
Q 006256 454 DGDVLLTYGSSSAVEMI-LQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT--HI-NAISYIIHEVTRVFLG 529 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~v-L~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I--~D-sAv~~iM~~Vd~VllG 529 (653)
.+.+||..|-+..+..- ++.+.+++...+|+++.-++. . ..+| ..++.+... .| ..+..++..+|.||--
T Consensus 3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~----~-~~~~-~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ 76 (253)
T 1xq6_A 3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQ----G-KEKI-GGEADVFIGDITDADSINPAFQGIDALVIL 76 (253)
T ss_dssp SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHH----H-HHHT-TCCTTEEECCTTSHHHHHHHHTTCSEEEEC
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCC----c-hhhc-CCCeeEEEecCCCHHHHHHHHcCCCEEEEe
Confidence 35678888876655433 444555543567877754431 1 1223 345544332 12 4566778889988876
Q ss_pred ceeEecC-----------CC----------eecccchHHHHHHHhhCCCCeeeeccc
Q 006256 530 ASSVLSN-----------GT----------VCSRVGTACVAMVAYGFHIPVLVCCEA 565 (653)
Q Consensus 530 AdaIlaN-----------G~----------V~NKiGT~~lAl~Ak~~~VPVyV~aet 565 (653)
|-..... -. -+|-.|+..+.-+|+.+++.-+|...+
T Consensus 77 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS 133 (253)
T 1xq6_A 77 TSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGS 133 (253)
T ss_dssp CCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEE
T ss_pred ccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcCCCEEEEEcC
Confidence 5432110 10 256789999999999888876665443
No 263
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=31.24 E-value=1.9e+02 Score=29.28 Aligned_cols=101 Identities=14% Similarity=0.188 Sum_probs=51.9
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc-c------hHHHHhh----h
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-N------AISYIIH----E 522 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D-s------Av~~iM~----~ 522 (653)
...+++|.|.+.++..+++.+.+.| -+|++.+ |.+.|... .+...|+.+..+.. . .+..+-. +
T Consensus 104 ~~~v~~~~g~~~al~~~~~~l~~~g--d~vl~~~--p~y~~~~~--~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 177 (416)
T 1bw0_A 104 KDNVVLCSGGSHGILMAITAICDAG--DYALVPQ--PGFPHYET--VCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDK 177 (416)
T ss_dssp GGGEEEESHHHHHHHHHHHHHCCTT--CEEEEEE--SCCTHHHH--HHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTT
T ss_pred cceEEEeCChHHHHHHHHHHhCCCC--CEEEEcC--CCcHhHHH--HHHHcCcEEEEeecCcccCCCCCHHHHHHHhccC
Confidence 4467888887778866666554333 3566543 44555433 34557888776642 1 1222222 2
Q ss_pred ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 523 Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
..+|++ .+---..|.++.+-=-..++-+|+.|++.+++
T Consensus 178 ~~~v~i-~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 215 (416)
T 1bw0_A 178 TKLLIV-TNPSNPCGSNFSRKHVEDIVRLAEELRLPLFS 215 (416)
T ss_dssp EEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEE-eCCCCCCCcccCHHHHHHHHHHHHHcCCEEEE
Confidence 222322 11111223333221134466678999988775
No 264
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=31.12 E-value=1.9e+02 Score=28.00 Aligned_cols=75 Identities=16% Similarity=0.239 Sum_probs=42.7
Q ss_pred EEEeCChHHHHHHHHHHHHcCCeeEEE-EeCCCCCchHHHHHHHHHhCCCCEEEEcc----------chHHHHhh--hcc
Q 006256 458 LLTYGSSSAVEMILQHAHELGKQFRVV-IVDSRPKHEGKLLLRRLVRKGLSCTYTHI----------NAISYIIH--EVT 524 (653)
Q Consensus 458 ILT~g~Ss~Ve~vL~~A~e~gk~f~Vi-V~ESRP~~EG~~La~eL~~~GI~vT~I~D----------sAv~~iM~--~Vd 524 (653)
||..|.++....+|....+.+....|. |+-.+|...|.+.| .+.||++.++.. ..+...++ ++|
T Consensus 6 vl~SG~g~~~~~~l~~l~~~~~~~~i~~Vvs~~~~~~~~~~A---~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~D 82 (216)
T 2ywr_A 6 VLVSGRGSNLQAIIDAIESGKVNASIELVISDNPKAYAIERC---KKHNVECKVIQRKEFPSKKEFEERMALELKKKGVE 82 (216)
T ss_dssp EEECSCCHHHHHHHHHHHTTSSCEEEEEEEESCTTCHHHHHH---HHHTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCC
T ss_pred EEEeCCcHHHHHHHHHHHhCCCCCeEEEEEeCCCChHHHHHH---HHcCCCEEEeCcccccchhhhhHHHHHHHHhcCCC
Confidence 444488887777777665544333433 33334555565444 456999987642 23334444 678
Q ss_pred EEEEcce-eEec
Q 006256 525 RVFLGAS-SVLS 535 (653)
Q Consensus 525 ~VllGAd-aIla 535 (653)
.+++-+- .|+.
T Consensus 83 liv~a~y~~il~ 94 (216)
T 2ywr_A 83 LVVLAGFMRILS 94 (216)
T ss_dssp EEEESSCCSCCC
T ss_pred EEEEeCchhhCC
Confidence 8877443 4443
No 265
>3gk7_A 4-hydroxybutyrate COA-transferase; alpha/beta protein; HET: SPD; 1.85A {Clostridium aminobutyricum} PDB: 3qdq_A*
Probab=31.04 E-value=94 Score=33.94 Aligned_cols=97 Identities=18% Similarity=0.170 Sum_probs=58.8
Q ss_pred HHHHHHhccCCCEEEEeCCh---HHHHHHHHHHHHcCCeeEEEEeCC-C------C----------CchHHHHHHHHHhC
Q 006256 445 VKHAVTKIRDGDVLLTYGSS---SAVEMILQHAHELGKQFRVVIVDS-R------P----------KHEGKLLLRRLVRK 504 (653)
Q Consensus 445 a~~a~~~I~dGdvILT~g~S---s~Ve~vL~~A~e~gk~f~ViV~ES-R------P----------~~EG~~La~eL~~~ 504 (653)
++.|+++|++|++|-.++.. ..|-..|.+..++-+.++++-.-+ . | ++-|.. .+++.+.
T Consensus 14 aeeA~~~ik~G~~v~~~~~~~~p~~l~~al~~~~~~l~~v~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~r~~i~~ 92 (448)
T 3gk7_A 14 ADEAVKSIKSGDRVLFAHCVAEPPVLVEAMVANAAAYKNVTVSHMVTLGKGEYSKPEYKENFTFEGWFTSPS-TRGSIAE 92 (448)
T ss_dssp HHHHGGGCCTTCEEEECSGGGCCHHHHHHHHHTGGGCSSEEEEESSCSSCCGGGSGGGTTTEEEEESSCCTT-THHHHHH
T ss_pred HHHHHHhCCCcCEEEECCCCCCHHHHHHHHHHHHHhhcCeEEEEeeccCCccccChHHhCcEEEecCcCCHH-HHhHHhC
Confidence 34567799999999998754 333333332222335677775411 1 1 122222 2455555
Q ss_pred C-CCEEEEccchHHHHhh----hccEEEEcceeEecCCCeecc
Q 006256 505 G-LSCTYTHINAISYIIH----EVTRVFLGASSVLSNGTVCSR 542 (653)
Q Consensus 505 G-I~vT~I~DsAv~~iM~----~Vd~VllGAdaIlaNG~V~NK 542 (653)
| +..+-+..+.+..++. .+|.+|+.|...-.+|.+.-.
T Consensus 93 G~~~~~p~~ls~~p~~~~~g~~~~DVAli~as~~D~~Gn~s~g 135 (448)
T 3gk7_A 93 GHGQFVPVFFHEVPSLIRKDIFHVDVFMVMVSPPDHNGFCCVG 135 (448)
T ss_dssp TSSEECCCCGGGHHHHHHTTTTCCSEEEEEECCCCTTSEEECC
T ss_pred CCeeEECchHHhHHHHHHhCCCCCCEEEEEEecCCCCCcEEec
Confidence 5 2232345677887776 489999999999999988643
No 266
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=30.87 E-value=3.9e+02 Score=26.11 Aligned_cols=98 Identities=15% Similarity=0.189 Sum_probs=51.6
Q ss_pred CEEEEeCChHHHHHHHHHHH----HcCCeeEEEEeCCCCCchHHHHH-HHHHhCCCCEEEEccc--------hHHHHhhh
Q 006256 456 DVLLTYGSSSAVEMILQHAH----ELGKQFRVVIVDSRPKHEGKLLL-RRLVRKGLSCTYTHIN--------AISYIIHE 522 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~----e~gk~f~ViV~ESRP~~EG~~La-~eL~~~GI~vT~I~Ds--------Av~~iM~~ 522 (653)
.+++|.|.+.++..++..+. +.| -+|++.+ |.+-+...+ ..+...|+.+.++... .+-..+.+
T Consensus 62 ~i~~~~g~~~a~~~~~~~~~~~~~~~g--d~vi~~~--~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~ 137 (382)
T 4hvk_A 62 TVVFTSGATEANNLAIIGYAMRNARKG--KHILVSA--VEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRD 137 (382)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHGGGC--CEEEEET--TCCHHHHHHHHHHHHTTCEEEEECBCTTSCBCHHHHHHHCCT
T ss_pred eEEEECCchHHHHHHHHHhhhhhcCCC--CEEEECC--CCcHHHHHHHHHHHhcCCEEEEeccCCCCCcCHHHHHHHhcc
Confidence 46677666667766555544 334 3566643 344444333 4556789999888632 22222222
Q ss_pred ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 523 Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
=.++++=..---..|.+.. --.++-+|+.|++ |++
T Consensus 138 ~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~-li~ 172 (382)
T 4hvk_A 138 DTILVSVQHANNEIGTIQP---VEEISEVLAGKAA-LHI 172 (382)
T ss_dssp TEEEEECCSBCTTTCBBCC---HHHHHHHHSSSSE-EEE
T ss_pred CceEEEEECCCCCceeeCC---HHHHHHHHHHcCE-EEE
Confidence 1233332222223344433 3467778999998 554
No 267
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=30.82 E-value=84 Score=33.62 Aligned_cols=96 Identities=10% Similarity=0.048 Sum_probs=53.9
Q ss_pred EeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHH--------HHHHhCCCCEEEEcc-------chHHHHhh--
Q 006256 460 TYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL--------RRLVRKGLSCTYTHI-------NAISYIIH-- 521 (653)
Q Consensus 460 T~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La--------~eL~~~GI~vT~I~D-------sAv~~iM~-- 521 (653)
|.+.+.++..+|....+ ..-+|++.+ .|.+.|. .+. ..|...|+.+..+.. ..+-..+.
T Consensus 98 ~~sGt~A~~~al~all~--pGD~Vl~~~-~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~~~d~e~l~~~i~~~ 174 (427)
T 3hvy_A 98 FVNGTHAIGAALFGNLR--PNDTMMSIC-GMPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDLKDGKVDINTVKEELKKD 174 (427)
T ss_dssp CCSHHHHHHHHHHHTCC--TTCEEEECS-SSCCGGGHHHHTCCTTCCSCCTGGGTCEEEECCCBTTBCCHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHHhcC--CCCEEEEeC-CCCchhHHHHhccccchhhhHHHHcCCEEEEecCCCCCcCHHHHHHHhhCC
Confidence 44444566555554433 334666655 3445444 344 345667998887643 34444454
Q ss_pred -hccEEEEcceeEecCCCeecccch----HHHHHHHhh--CCCCeeee
Q 006256 522 -EVTRVFLGASSVLSNGTVCSRVGT----ACVAMVAYG--FHIPVLVC 562 (653)
Q Consensus 522 -~Vd~VllGAdaIlaNG~V~NKiGT----~~lAl~Ak~--~~VPVyV~ 562 (653)
+..+|++.... |...|..|+ ..++-+|++ |++.++|=
T Consensus 175 ~~tklV~i~~s~----gyp~nptg~v~dl~~i~~ia~~~~~g~~livD 218 (427)
T 3hvy_A 175 DSIKLIHIQRST----GYGWRKSLRIAEIAEIIKSIREVNENVIVFVD 218 (427)
T ss_dssp TTEEEEEEESSC----CSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEE
T ss_pred CCCEEEEEECCC----CCCCCccccHHHHHHHHHHHHHhCCCCEEEEE
Confidence 45566554322 335566665 356667888 89887763
No 268
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=30.71 E-value=1.7e+02 Score=28.57 Aligned_cols=99 Identities=11% Similarity=0.061 Sum_probs=53.0
Q ss_pred CEEEEeCChHHHHHHH-HHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc--chHHHHhhhccEEEEccee
Q 006256 456 DVLLTYGSSSAVEMIL-QHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--NAISYIIHEVTRVFLGASS 532 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL-~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D--sAv~~iM~~Vd~VllGAda 532 (653)
.+||..|-+..|..-| +.+.++| .+|+++.-++... . |. ++.+..... ..+..++..+|.||--|-.
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~--~----~~--~~~~~~~Dl~~~~~~~~~~~~d~Vih~a~~ 72 (311)
T 3m2p_A 3 LKIAVTGGTGFLGQYVVESIKNDG--NTPIILTRSIGNK--A----IN--DYEYRVSDYTLEDLINQLNDVDAVVHLAAT 72 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCCC-------------CCEEEECCCCHHHHHHHTTTCSEEEECCCC
T ss_pred CEEEEECCCcHHHHHHHHHHHhCC--CEEEEEeCCCCcc--c----CC--ceEEEEccccHHHHHHhhcCCCEEEEcccc
Confidence 4688888765554333 4444545 4677665443221 1 21 554432222 3344555667777654432
Q ss_pred EecC----CCeecccchHHHHHHHhhCCCCeeeecc
Q 006256 533 VLSN----GTVCSRVGTACVAMVAYGFHIPVLVCCE 564 (653)
Q Consensus 533 IlaN----G~V~NKiGT~~lAl~Ak~~~VPVyV~ae 564 (653)
...+ ---.|-.||..+.-+|+..+++-+|.+.
T Consensus 73 ~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~S 108 (311)
T 3m2p_A 73 RGSQGKISEFHDNEILTQNLYDACYENNISNIVYAS 108 (311)
T ss_dssp CCSSSCGGGTHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEc
Confidence 2111 0124677999999999999998444433
No 269
>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*
Probab=30.58 E-value=1.1e+02 Score=30.09 Aligned_cols=26 Identities=8% Similarity=-0.055 Sum_probs=19.9
Q ss_pred cccchHHHHHHHhhCCCCeeeecccc
Q 006256 541 SRVGTACVAMVAYGFHIPVLVCCEAY 566 (653)
Q Consensus 541 NKiGT~~lAl~Ak~~~VPVyV~aety 566 (653)
|-.||..+.-+|+.+++.-+|.+.+.
T Consensus 83 n~~~~~~l~~~~~~~~~~~~v~~SS~ 108 (321)
T 1e6u_A 83 NMMIESNIIHAAHQNDVNKLLFLGSS 108 (321)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEccH
Confidence 66799999999999998666655543
No 270
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=30.46 E-value=1.3e+02 Score=31.56 Aligned_cols=102 Identities=17% Similarity=0.148 Sum_probs=52.8
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc-------chHHHHhh-----
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-------NAISYIIH----- 521 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D-------sAv~~iM~----- 521 (653)
..++++|.|.+.++..+++.+.+.| -+|++. .|.+.|...+ +...|+.+..+.. ..+-..+.
T Consensus 140 ~~~v~~t~G~~~al~~~~~~l~~~G--d~Vlv~--~p~y~~~~~~--~~~~g~~~~~v~~~~~g~d~~~L~~~l~~~~~~ 213 (448)
T 3aow_A 140 DNDIMITSGSQQALDLIGRVFLNPG--DIVVVE--APTYLAALQA--FNFYEPQYIQIPLDDEGMKVEILEEKLKELKSQ 213 (448)
T ss_dssp TSEEEEESSHHHHHHHHHHHHCCTT--CEEEEE--ESCCHHHHHH--HHTTCCEEEEEEEETTEECHHHHHHHHHHHHHT
T ss_pred hhhEEEeCcHHHHHHHHHHHHcCCC--CEEEEe--CCChHHHHHH--HHHcCCEEEEeccCCCCCCHHHHHHHHhhhhcc
Confidence 3467788777778866666554334 355553 3666665443 3446887776642 23333443
Q ss_pred --hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 522 --EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 522 --~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
++.+|++=..---..|.++..-=--.|+-+|+.|++.+++
T Consensus 214 ~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~ 255 (448)
T 3aow_A 214 GKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVE 255 (448)
T ss_dssp TCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred CCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 2222222111111123333221123577788999987765
No 271
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=30.42 E-value=98 Score=33.08 Aligned_cols=97 Identities=15% Similarity=0.115 Sum_probs=54.0
Q ss_pred EeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH--------HHHHhCCCCEEEEcc--------chHHHHhh--
Q 006256 460 TYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL--------RRLVRKGLSCTYTHI--------NAISYIIH-- 521 (653)
Q Consensus 460 T~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La--------~eL~~~GI~vT~I~D--------sAv~~iM~-- 521 (653)
|.+.+.++..+|....+.| -+|++.+..++..-..+. ..|...|+.++++.. ..+-..+.
T Consensus 97 ~~sGt~Ai~~al~all~pG--D~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~ 174 (427)
T 3i16_A 97 FVNGTHALGAALFGNLRPG--NTMLSVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKED 174 (427)
T ss_dssp CCSHHHHHHHHHHHHCCTT--CEEEESSSSCCGGGHHHHTCSCCCSSCCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTC
T ss_pred CccHHHHHHHHHHHHhCCC--CEEEEeCCCccHHHHHHHhccccchHHHHHHcCCEEEEecCccCCCcCHHHHHHHhhCC
Confidence 4444456655555444333 356665533333333344 456677998888753 23444443
Q ss_pred -hccEEEEcceeEecCCCeecccchH----HHHHHHhh--CCCCeeee
Q 006256 522 -EVTRVFLGASSVLSNGTVCSRVGTA----CVAMVAYG--FHIPVLVC 562 (653)
Q Consensus 522 -~Vd~VllGAdaIlaNG~V~NKiGT~----~lAl~Ak~--~~VPVyV~ 562 (653)
+..+|++.. +-|...|..|+. .++-+|+. |++.|+|=
T Consensus 175 ~~tklV~i~~----s~~~p~nptg~i~dl~~i~~la~~~~~g~~livD 218 (427)
T 3i16_A 175 ESITLVHIQR----STGYGWRRALLIEDIKSIVDCVKNIRKDIICFVD 218 (427)
T ss_dssp TTEEEEEEEC----SCCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred CCCEEEEEEc----CCCCCCCCcccHHHHHHHHHHHHHhCCCCEEEEE
Confidence 344554432 124466777763 46677888 89888763
No 272
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=30.38 E-value=1.4e+02 Score=29.35 Aligned_cols=83 Identities=12% Similarity=0.077 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhccCCCEEEEeCChHHHHHHHHHHHHc--CCeeEEEEeCCCCCchHHHHH-HHHHhCC--CCEEEEccch
Q 006256 441 DRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHEL--GKQFRVVIVDSRPKHEGKLLL-RRLVRKG--LSCTYTHINA 515 (653)
Q Consensus 441 ~~~Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~--gk~f~ViV~ESRP~~EG~~La-~eL~~~G--I~vT~I~DsA 515 (653)
.+.|+..+..++++|.+||=.|+|+-. ++..+.+. ....+|+-+|-.|.. .+.+ +.+.+.| .+|+++...+
T Consensus 57 ~~~i~~l~~~~~~~~~~vLDlGcGtG~--~~~~la~~~~~~~~~v~gvD~s~~m--l~~A~~~~~~~~~~~~v~~~~~D~ 132 (261)
T 4gek_A 57 ISMIGMLAERFVQPGTQVYDLGCSLGA--ATLSVRRNIHHDNCKIIAIDNSPAM--IERCRRHIDAYKAPTPVDVIEGDI 132 (261)
T ss_dssp HHHHHHHHHHHCCTTCEEEEETCTTTH--HHHHHHHTCCSSSCEEEEEESCHHH--HHHHHHHHHTSCCSSCEEEEESCT
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCCCH--HHHHHHHhcCCCCCEEEEEECCHHH--HHHHHHHHHhhccCceEEEeeccc
Confidence 345777788889999999999998732 11222222 245789988865532 2334 3455555 4688887554
Q ss_pred HHHHhhhccEEE
Q 006256 516 ISYIIHEVTRVF 527 (653)
Q Consensus 516 v~~iM~~Vd~Vl 527 (653)
...-....|.|+
T Consensus 133 ~~~~~~~~d~v~ 144 (261)
T 4gek_A 133 RDIAIENASMVV 144 (261)
T ss_dssp TTCCCCSEEEEE
T ss_pred ccccccccccce
Confidence 332223444443
No 273
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=30.17 E-value=1.2e+02 Score=25.60 Aligned_cols=81 Identities=15% Similarity=0.183 Sum_probs=48.4
Q ss_pred CCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccch--HHHHhh-hccEEEEcceeEecCCCeecccchHHHHHHHh-
Q 006256 478 GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA--ISYIIH-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAY- 553 (653)
Q Consensus 478 gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsA--v~~iM~-~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak- 553 (653)
....+|+|+|..+.. ...+...|...|+.|....+.. +..+-. ..|.||+..+- .+ .-|--.+..+-+
T Consensus 6 ~~~~~iLivd~~~~~-~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l--~~-----~~g~~~~~~l~~~ 77 (147)
T 2zay_A 6 GKWWRIMLVDTQLPA-LAASISALSQEGFDIIQCGNAIEAVPVAVKTHPHLIITEANM--PK-----ISGMDLFNSLKKN 77 (147)
T ss_dssp --CEEEEEECTTGGG-GHHHHHHHHHHTEEEEEESSHHHHHHHHHHHCCSEEEEESCC--SS-----SCHHHHHHHHHTS
T ss_pred CCCceEEEEeCCHHH-HHHHHHHHHHcCCeEEEeCCHHHHHHHHHcCCCCEEEEcCCC--CC-----CCHHHHHHHHHcC
Confidence 456788988887654 3345566777888887655432 222222 48999887543 22 124334444443
Q ss_pred --hCCCCeeeecccc
Q 006256 554 --GFHIPVLVCCEAY 566 (653)
Q Consensus 554 --~~~VPVyV~aety 566 (653)
..++|+++++...
T Consensus 78 ~~~~~~pii~ls~~~ 92 (147)
T 2zay_A 78 PQTASIPVIALSGRA 92 (147)
T ss_dssp TTTTTSCEEEEESSC
T ss_pred cccCCCCEEEEeCCC
Confidence 4579999998754
No 274
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=30.14 E-value=69 Score=32.21 Aligned_cols=94 Identities=15% Similarity=0.174 Sum_probs=48.3
Q ss_pred CEEEEeCChHHHHHHHHHH-HHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc---------hHHHHhhhccE
Q 006256 456 DVLLTYGSSSAVEMILQHA-HELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---------AISYIIHEVTR 525 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A-~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds---------Av~~iM~~Vd~ 525 (653)
.+|+|-+.+.++..+|..+ ...| -+|++. .|.+.+... -+...|+.+.++... .+-..+.+=.+
T Consensus 53 ~~i~~~sgt~al~~~l~~l~~~~g--d~Vi~~--~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~ 126 (373)
T 3frk_A 53 YCIGCGNGLDALHLILKGYDIGFG--DEVIVP--SNTFIATAL--AVSYTGAKPIFVEPDIRTYNIDPSLIESAITEKTK 126 (373)
T ss_dssp EEEEESCHHHHHHHHHHHTTCCTT--CEEEEE--TTSCTHHHH--HHHHHSCEEEEECEETTTTEECGGGTGGGCCTTEE
T ss_pred eEEEeCCHHHHHHHHHHHcCCCCc--CEEEEC--CCCcHHHHH--HHHHcCCEEEEEeccccccCcCHHHHHHhcCCCCe
Confidence 5666666666776666554 3223 355554 345555333 345568887777532 11111211123
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 526 VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
+|+ ..-..|.+.. --.++-+|+.|++.|++
T Consensus 127 ~v~---~~n~~G~~~~---l~~i~~l~~~~~~~li~ 156 (373)
T 3frk_A 127 AII---AVHLYGQPAD---MDEIKRIAKKYNLKLIE 156 (373)
T ss_dssp EEE---EECCTTCCCC---HHHHHHHHHHHTCEEEE
T ss_pred EEE---EECCCcCccc---HHHHHHHHHHcCCEEEE
Confidence 333 1112343211 24677789999998876
No 275
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=30.06 E-value=1e+02 Score=25.90 Aligned_cols=78 Identities=12% Similarity=0.113 Sum_probs=43.1
Q ss_pred eeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHH-HHhh--hccEEEEcceeEecCCCeecccchHHHHHHHhh-C
Q 006256 480 QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAIS-YIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG-F 555 (653)
Q Consensus 480 ~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~-~iM~--~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~-~ 555 (653)
..+|+|+|..+.. ...+...|.+.|+.|....+..-+ ..+. ..|.||+.. +.+. -|.-.+..+-+. .
T Consensus 4 ~~~iLivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~---~~~~-----~g~~~~~~l~~~~~ 74 (142)
T 2qxy_A 4 TPTVMVVDESRIT-FLAVKNALEKDGFNVIWAKNEQEAFTFLRREKIDLVFVDV---FEGE-----ESLNLIRRIREEFP 74 (142)
T ss_dssp CCEEEEECSCHHH-HHHHHHHHGGGTCEEEEESSHHHHHHHHTTSCCSEEEEEC---TTTH-----HHHHHHHHHHHHCT
T ss_pred CCeEEEEeCCHHH-HHHHHHHHHhCCCEEEEECCHHHHHHHHhccCCCEEEEeC---CCCC-----cHHHHHHHHHHHCC
Confidence 4567777766543 233446677778877755443222 2222 478888865 2221 233333333333 3
Q ss_pred CCCeeeecccc
Q 006256 556 HIPVLVCCEAY 566 (653)
Q Consensus 556 ~VPVyV~aety 566 (653)
++|+++++...
T Consensus 75 ~~pii~ls~~~ 85 (142)
T 2qxy_A 75 DTKVAVLSAYV 85 (142)
T ss_dssp TCEEEEEESCC
T ss_pred CCCEEEEECCC
Confidence 69999988754
No 276
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Probab=30.03 E-value=1e+02 Score=31.26 Aligned_cols=18 Identities=6% Similarity=-0.309 Sum_probs=10.9
Q ss_pred cccchHHHHHHHhhCCCC
Q 006256 541 SRVGTACVAMVAYGFHIP 558 (653)
Q Consensus 541 NKiGT~~lAl~Ak~~~VP 558 (653)
|-.||..++-+|+.+++.
T Consensus 69 n~~~~~~l~~a~~~~~~~ 86 (369)
T 3st7_A 69 NVSYLDHVLDILTRNTKK 86 (369)
T ss_dssp CCBHHHHHHHHHTTCSSC
T ss_pred HHHHHHHHHHHHHHhCCC
Confidence 555666666666666654
No 277
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=29.68 E-value=92 Score=28.55 Aligned_cols=99 Identities=12% Similarity=0.064 Sum_probs=56.7
Q ss_pred EEEEeCChHHHHH-HHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEE--ccchHHHHhhhccEEEEcceeE
Q 006256 457 VLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT--HINAISYIIHEVTRVFLGASSV 533 (653)
Q Consensus 457 vILT~g~Ss~Ve~-vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I--~DsAv~~iM~~Vd~VllGAdaI 533 (653)
.||..|-+.-+.. +++.+.++| ++|+++.-++.. ..+|. .++.+... .|... ..+..+|.||.-|-..
T Consensus 2 kvlVtGatG~iG~~l~~~L~~~g--~~V~~~~R~~~~-----~~~~~-~~~~~~~~D~~d~~~-~~~~~~d~vi~~ag~~ 72 (221)
T 3ew7_A 2 KIGIIGATGRAGSRILEEAKNRG--HEVTAIVRNAGK-----ITQTH-KDINILQKDIFDLTL-SDLSDQNVVVDAYGIS 72 (221)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCSHH-----HHHHC-SSSEEEECCGGGCCH-HHHTTCSEEEECCCSS
T ss_pred eEEEEcCCchhHHHHHHHHHhCC--CEEEEEEcCchh-----hhhcc-CCCeEEeccccChhh-hhhcCCCEEEECCcCC
Confidence 4777776554433 344455555 577776554421 22333 55544332 23223 6667888888755432
Q ss_pred ecCCCeecccchHHHHHHHhhCCCCeeeeccc
Q 006256 534 LSNGTVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (653)
Q Consensus 534 laNG~V~NKiGT~~lAl~Ak~~~VPVyV~aet 565 (653)
. ...-.|-.||..+.-+|+..+++-+|...+
T Consensus 73 ~-~~~~~~~~~~~~l~~a~~~~~~~~~v~~SS 103 (221)
T 3ew7_A 73 P-DEAEKHVTSLDHLISVLNGTVSPRLLVVGG 103 (221)
T ss_dssp T-TTTTSHHHHHHHHHHHHCSCCSSEEEEECC
T ss_pred c-cccchHHHHHHHHHHHHHhcCCceEEEEec
Confidence 2 223457788899999999987665554433
No 278
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=29.65 E-value=2.4e+02 Score=28.19 Aligned_cols=96 Identities=9% Similarity=0.051 Sum_probs=51.4
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc---chHHHHhhh-------ccE
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---NAISYIIHE-------VTR 525 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D---sAv~~iM~~-------Vd~ 525 (653)
+.|++-+.+.++..+|....+ +.-.|++. .|.+.+.. ..+...|+++..+.. ..+-..+.+ +.+
T Consensus 105 ~~i~~~sGt~a~~~~l~~~~~--~gd~v~~~--~~~~~~~~--~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~ 178 (399)
T 3tqx_A 105 DTILYSSCFDANGGLFETLLG--PEDAIISD--ELNHASII--DGIRLCKAQRYRYKNNAMGDLEAKLKEADEKGARFKL 178 (399)
T ss_dssp EEEEESCHHHHHHTTHHHHCC--TTCEEEEE--TTCCHHHH--HHHHSCCSEEEEECTTCTTHHHHHHHHHHTTTCSSEE
T ss_pred cEEEECchHHHHHHHHHHhcC--CCCEEEEC--CcccHHHH--HHHHHcCCceeEeCCCCHHHHHHHHHhhhccCCCceE
Confidence 344444445566555544432 33345543 45555432 345567888777742 344444543 334
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 526 VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
|++.. .--..|.+.. --.++-+|++|++.+++
T Consensus 179 v~~~~-~~nptG~~~~---l~~i~~l~~~~~~~li~ 210 (399)
T 3tqx_A 179 IATDG-VFSMDGIIAD---LKSICDLADKYNALVMV 210 (399)
T ss_dssp EEEES-EETTTTEECC---HHHHHHHHHHTTCEEEE
T ss_pred EEEeC-CCCCCCCcCC---HHHHHHHHHHcCCEEEE
Confidence 44433 2234455544 45677889999987765
No 279
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=29.48 E-value=22 Score=31.36 Aligned_cols=55 Identities=9% Similarity=-0.067 Sum_probs=35.6
Q ss_pred HHhCCCCEEEE--ccchHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeecc
Q 006256 501 LVRKGLSCTYT--HINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCE 564 (653)
Q Consensus 501 L~~~GI~vT~I--~DsAv~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~ae 564 (653)
..+.||++... ..+.+...+.+.|.|++|-..-+.-. .+--.|..++|||.|+-.
T Consensus 30 a~~~gi~v~i~a~~~~~~~~~~~~~DvvLLgPQV~y~~~---------~ik~~~~~~~ipV~vI~~ 86 (108)
T 3nbm_A 30 ANLTEVRVIANSGAYGAHYDIMGVYDLIILAPQVRSYYR---------EMKVDAERLGIQIVATRG 86 (108)
T ss_dssp HHHHTCSEEEEEEETTSCTTTGGGCSEEEECGGGGGGHH---------HHHHHHTTTTCEEEECCH
T ss_pred HHHCCCceEEEEcchHHHHhhccCCCEEEEChHHHHHHH---------HHHHHhhhcCCcEEEeCH
Confidence 34457777764 34444555678999999976543321 244556778999998653
No 280
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=29.47 E-value=1.2e+02 Score=31.93 Aligned_cols=100 Identities=15% Similarity=0.236 Sum_probs=54.7
Q ss_pred CCEEEEeCChHHHHHHHHHHHH-----cCC-eeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccch---------HHHH
Q 006256 455 GDVLLTYGSSSAVEMILQHAHE-----LGK-QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA---------ISYI 519 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~e-----~gk-~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsA---------v~~i 519 (653)
..+++|.|.+.++..+++.+.+ .|. +-+|++. +|.+.+.. ..+...|+.+..+.... +-..
T Consensus 127 ~~~~~~~ggt~a~~~a~~a~~~~~~~~~g~~~~~Vi~~--~~~h~~~~--~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~ 202 (497)
T 3mc6_A 127 GCGTTTSGGTESLLLACLSAKMYALHHRGITEPEIIAP--VTAHAGFD--KAAYYFGMKLRHVELDPTTYQVDLGKVKKF 202 (497)
T ss_dssp CCEEEESSHHHHHHHHHHHHHHHHHHHSCCSSCEEEEE--TTSCHHHH--HHHHHSCCEEEEECBCTTTCSBCTTTTGGG
T ss_pred CeEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEe--CCccHHHH--HHHHHcCCeEEEEecCcccCcCCHHHHHHH
Confidence 4678888877777776666643 231 1256653 45554432 33445699888885322 1111
Q ss_pred hhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 520 IHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 520 M~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
+.+-.++|+...--...|.+.. + -.|+-+|+.||++++|
T Consensus 203 i~~~~~~v~~~~p~nptG~~~~-l--~~i~~la~~~g~~liv 241 (497)
T 3mc6_A 203 INKNTVLLVGSAPNFPHGIADD-I--EGLGKIAQKYKLPLHV 241 (497)
T ss_dssp CCSSEEEEEEETTCTTTCCCCS-C--TTTTTHHHHTTCCEEE
T ss_pred HhhCCEEEEEECCCCCCCcCCC-H--HHHHHHHHHhCCEEEE
Confidence 1111234433322223454433 2 2466789999999887
No 281
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=29.39 E-value=4.2e+02 Score=28.22 Aligned_cols=105 Identities=15% Similarity=0.061 Sum_probs=54.2
Q ss_pred CCCEEEEeCChHHHHHHHHHHHH--------cCC----eeEEEEeCCCCCchHHHHHHHHHhCCC-CEEEEccc------
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHE--------LGK----QFRVVIVDSRPKHEGKLLLRRLVRKGL-SCTYTHIN------ 514 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e--------~gk----~f~ViV~ESRP~~EG~~La~eL~~~GI-~vT~I~Ds------ 514 (653)
.+..++|-|-+.++...|..+.+ .|. +..|++.+.- +-...-+..+...|. .+..|...
T Consensus 165 ~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~--h~s~~~~~~~~g~g~~~v~~v~~~~~~~~d 242 (515)
T 2jis_A 165 SGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKEC--HYSIQKGAAFLGLGTDSVRVVKADERGKMV 242 (515)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTS--CTHHHHHHHHTTSCGGGEEEECBCTTSCBC
T ss_pred CCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCc--cHHHHHHHHHcCCCCCcEEEEecCCCCcCC
Confidence 35678887777766666665531 352 4577777642 212222222222233 77777531
Q ss_pred --hHHHHhhh------ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeec
Q 006256 515 --AISYIIHE------VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (653)
Q Consensus 515 --Av~~iM~~------Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~a 563 (653)
++-..+.+ ..++|+....-...|.+. . --.|+-+|++||+.|+|=+
T Consensus 243 ~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~-~--l~~I~~la~~~g~~l~vD~ 296 (515)
T 2jis_A 243 PEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFD-P--LEAIADVCQRHGLWLHVDA 296 (515)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBC-C--HHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCcc-C--HHHHHHHHHHcCCeEEEeh
Confidence 23333433 134444322212234433 2 3467888999999988743
No 282
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*
Probab=29.21 E-value=4.1e+02 Score=29.36 Aligned_cols=108 Identities=16% Similarity=0.171 Sum_probs=67.6
Q ss_pred HHHHHHHhccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCc--------------hH----HHHHHHHHhC-
Q 006256 444 IVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKH--------------EG----KLLLRRLVRK- 504 (653)
Q Consensus 444 Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~--------------EG----~~La~eL~~~- 504 (653)
++..+.+.+. +..||..|.+.+=..++..+...|.. ++.++|..... -| ..++..|.+.
T Consensus 22 ~G~~~q~~L~-~~~VlvvG~GGlGseiak~La~aGVg-~itlvD~D~Ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~lN 99 (531)
T 1tt5_A 22 WGDHGQEALE-SAHVCLINATATGTEILKNLVLPGIG-SFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELN 99 (531)
T ss_dssp HHHHHHHHHH-HCEEEEECCSHHHHHHHHHHHTTTCS-EEEEECCCBBCHHHHHHCTTCCGGGBTSBHHHHHHHHHHTTC
T ss_pred cCHHHHHHHh-cCeEEEECcCHHHHHHHHHHHHcCCC-eEEEEeCCEechhhcccCccCChhhcCcHHHHHHHHHHHHhC
Confidence 6667777776 46788888876555666676667765 45555543311 12 2233666665
Q ss_pred -CCCEEEEccchHH------HHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeee
Q 006256 505 -GLSCTYTHINAIS------YIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (653)
Q Consensus 505 -GI~vT~I~DsAv~------~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~ 562 (653)
+++++.+...--. .++...|.||.+.|.+- --+.+.-.|+.+++|++.+
T Consensus 100 p~v~v~~~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~---------~r~~ln~~c~~~~iplI~~ 155 (531)
T 1tt5_A 100 SDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPES---------TSLRLADVLWNSQIPLLIC 155 (531)
T ss_dssp TTSBCCEESSCHHHHHHSCGGGGGGCSEEEEESCCHH---------HHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEeCCCcchhhhhhHHHhcCCCEEEEeCCCHH---------HHHHHHHHHHHcCCCEEEE
Confidence 4777777643221 34567899987765432 3356667889999999876
No 283
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*
Probab=29.19 E-value=1.1e+02 Score=29.21 Aligned_cols=105 Identities=12% Similarity=0.161 Sum_probs=63.6
Q ss_pred CCEEEEeCChHHHHHHH-HHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEE-cc----chHHHHhh-------
Q 006256 455 GDVLLTYGSSSAVEMIL-QHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT-HI----NAISYIIH------- 521 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL-~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I-~D----sAv~~iM~------- 521 (653)
+.+||..|-++-+...| +...++| .+|++++.+.......+..+|...|..+.++ +| ..+..++.
T Consensus 4 ~k~~lVTGas~gIG~~ia~~l~~~G--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 81 (246)
T 3osu_A 4 TKSALVTGASRGIGRSIALQLAEEG--YNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFG 81 (246)
T ss_dssp SCEEEETTCSSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC--CEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 56788888776654444 3344444 5788877776666677778888888888765 33 23444444
Q ss_pred hccEEEEcceeEecCCCe-------------ecccchHHHHHHH----hhCCCCeeee
Q 006256 522 EVTRVFLGASSVLSNGTV-------------CSRVGTACVAMVA----YGFHIPVLVC 562 (653)
Q Consensus 522 ~Vd~VllGAdaIlaNG~V-------------~NKiGT~~lAl~A----k~~~VPVyV~ 562 (653)
++|.+|--|- +...+.+ +|-.|++.+.-.+ +..+...+|.
T Consensus 82 ~id~lv~nAg-~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~ 138 (246)
T 3osu_A 82 SLDVLVNNAG-ITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIIN 138 (246)
T ss_dssp CCCEEEECCC-CCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCCEEEECCC-CCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 5787776653 2222221 3677888877666 3344444444
No 284
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=29.10 E-value=58 Score=33.69 Aligned_cols=91 Identities=7% Similarity=0.039 Sum_probs=53.1
Q ss_pred HHHHHHHHH----hccC-CCEEEEeCChHHHHHHHHHHHHc---CCeeEEEEeCC----CCCchHHHHHHHHHhC-CCCE
Q 006256 442 RVIVKHAVT----KIRD-GDVLLTYGSSSAVEMILQHAHEL---GKQFRVVIVDS----RPKHEGKLLLRRLVRK-GLSC 508 (653)
Q Consensus 442 ~~Ia~~a~~----~I~d-GdvILT~g~Ss~Ve~vL~~A~e~---gk~f~ViV~ES----RP~~EG~~La~eL~~~-GI~v 508 (653)
+.|++.|++ +|.+ |++ +-.++|+++..+.....+. .++++|+-++. .|......|++.|.+. |+++
T Consensus 125 ~~ia~~AA~~l~~~i~~~~~~-igl~~GsT~~~~~~~L~~~~~~~~~v~vv~l~ggl~~~~~~~~~~i~~~la~~~~~~~ 203 (345)
T 2o0m_A 125 SDFGDVLTNTLNLLLPNGENT-IAVMGGTTMAMVAENMGSLETEKRHNLFVPARGGIGEAVSVQANSISAVMANKTGGNY 203 (345)
T ss_dssp HHHHHHHHHHHHHHCCSEEEE-EEECCSHHHHHHHHTCCCCCCSSEEEEEEESBSCCCCCGGGSHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHHHhcCcCCCE-EEECCcHHHHHHHHHhhhccCCCCCcEEEEcCCcCCCCcccCHHHHHHHHHHHhCCce
Confidence 346666665 4888 655 4568888887776665432 13566665442 2233455677888765 8877
Q ss_pred EEE--ccc---hH-HHHh------------hhccEEEEcceeE
Q 006256 509 TYT--HIN---AI-SYII------------HEVTRVFLGASSV 533 (653)
Q Consensus 509 T~I--~Ds---Av-~~iM------------~~Vd~VllGAdaI 533 (653)
..+ ++. .. -.++ ..+|+.|+|.-.+
T Consensus 204 ~~l~~P~~~~~~~~~~l~~~~~~~~~l~~~~~~DiailGIG~~ 246 (345)
T 2o0m_A 204 RALYVPEQLSRETYNSLLQEPSIQEVLTLISHANCVVHSIGRA 246 (345)
T ss_dssp CCCCCCSSCCHHHHHHHHTCHHHHHHHHHHHTCSEEEECCEEH
T ss_pred EEEeccccCCHHHHHHHHhChHHHHHHHHHHcCCEEEEccCCc
Confidence 643 211 11 1112 2699999998744
No 285
>3jvi_A Protein tyrosine phosphatase; niaid, ssgcid, seattle structural genomics center for infect disease, parasitic protozoan, dysentery; 1.80A {Entamoeba histolytica} PDB: 3js5_A* 3ily_A 3ido_A*
Probab=29.08 E-value=64 Score=30.01 Aligned_cols=72 Identities=15% Similarity=0.142 Sum_probs=48.3
Q ss_pred EEEEe-----CChHHHHHHHHHHHH-cCC--eeEEEEeCCCCCchH----HHHHHHHHhCCCCEEEEccchHHHHhhhcc
Q 006256 457 VLLTY-----GSSSAVEMILQHAHE-LGK--QFRVVIVDSRPKHEG----KLLLRRLVRKGLSCTYTHINAISYIIHEVT 524 (653)
Q Consensus 457 vILT~-----g~Ss~Ve~vL~~A~e-~gk--~f~ViV~ESRP~~EG----~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd 524 (653)
.||.. |+|..-|.++++..+ .|. .|.|.-.-+.++..| .+....|.+.||+.....-.--...+.+.|
T Consensus 6 ~vLFVC~gN~cRSpmAE~~~~~~~~~~gl~~~~~v~SAGt~~~~~G~~~~~~a~~~l~~~Gid~~~~ar~l~~~~~~~~D 85 (161)
T 3jvi_A 6 KLLFVCLGNICRSPAAEAVMKKVIQNHHLTEKYICDSAGTCSYHEGQQADSRMRKVGKSRGYQVDSISRPVVSSDFKNFD 85 (161)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHTTCGGGEEEEEEESCCTTTTCBCCHHHHHHHHHTTCCCCCBCCBCCHHHHHHCS
T ss_pred EEEEECCCchhHHHHHHHHHHHHHHHcCCCCcEEEEeeecCCcccCCCCCHHHHHHHHHcCcCCCCeeeECCHHHhcCCC
Confidence 46665 457888898988654 443 688888888987666 344588999999874322222233456788
Q ss_pred EEEE
Q 006256 525 RVFL 528 (653)
Q Consensus 525 ~Vll 528 (653)
.||.
T Consensus 86 lIl~ 89 (161)
T 3jvi_A 86 YIFA 89 (161)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8865
No 286
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=29.03 E-value=1.4e+02 Score=25.60 Aligned_cols=80 Identities=19% Similarity=0.088 Sum_probs=45.9
Q ss_pred CeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchH-HHHhh--hccEEEEcceeEecCCCeecccchHHHHHHHhh-
Q 006256 479 KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAI-SYIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG- 554 (653)
Q Consensus 479 k~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv-~~iM~--~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~- 554 (653)
+..+|+|+|..+.. ...+...|...|+.|....+..- -..+. ..|.||+..+- .+ .-|-..+..+.+.
T Consensus 6 ~~~~iLivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l--~~-----~~g~~~~~~l~~~~ 77 (154)
T 2rjn_A 6 KNYTVMLVDDEQPI-LNSLKRLIKRLGCNIITFTSPLDALEALKGTSVQLVISDMRM--PE-----MGGEVFLEQVAKSY 77 (154)
T ss_dssp SCCEEEEECSCHHH-HHHHHHHHHTTTCEEEEESCHHHHHHHHTTSCCSEEEEESSC--SS-----SCHHHHHHHHHHHC
T ss_pred CCCeEEEEcCCHHH-HHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEecCC--CC-----CCHHHHHHHHHHhC
Confidence 45678888876543 23344667778887775554322 22222 47888887542 22 1233344444443
Q ss_pred CCCCeeeecccc
Q 006256 555 FHIPVLVCCEAY 566 (653)
Q Consensus 555 ~~VPVyV~aety 566 (653)
.++|+++++...
T Consensus 78 ~~~~ii~ls~~~ 89 (154)
T 2rjn_A 78 PDIERVVISGYA 89 (154)
T ss_dssp TTSEEEEEECGG
T ss_pred CCCcEEEEecCC
Confidence 479999987654
No 287
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=29.01 E-value=53 Score=28.33 Aligned_cols=57 Identities=21% Similarity=0.172 Sum_probs=35.2
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCC-CCchHHHHHHHHHhC--CCCEEEEccc
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSR-PKHEGKLLLRRLVRK--GLSCTYTHIN 514 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESR-P~~EG~~La~eL~~~--GI~vT~I~Ds 514 (653)
.|..|.+....... +..+. +...|.++++|-. |...|..+++.|.+. .+++.+++..
T Consensus 26 ~~~~v~~~~~~~~a---~~~l~-~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 85 (151)
T 3kcn_A 26 FDFEVTTCESGPEA---LACIK-KSDPFSVIMVDMRMPGMEGTEVIQKARLISPNSVYLMLTGN 85 (151)
T ss_dssp TTSEEEEESSHHHH---HHHHH-HSCCCSEEEEESCCSSSCHHHHHHHHHHHCSSCEEEEEECG
T ss_pred cCceEEEeCCHHHH---HHHHH-cCCCCCEEEEeCCCCCCcHHHHHHHHHhcCCCcEEEEEECC
Confidence 45566666555433 22222 2445777877754 788899999888764 4566666543
No 288
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=28.99 E-value=1.5e+02 Score=29.00 Aligned_cols=98 Identities=13% Similarity=0.064 Sum_probs=53.3
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH-HH-HHhCCCCEEEEccc---hHHHHhh-hccEEEEc
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RR-LVRKGLSCTYTHIN---AISYIIH-EVTRVFLG 529 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La-~e-L~~~GI~vT~I~Ds---Av~~iM~-~Vd~VllG 529 (653)
+.|++.+.+.++..++..+.+.| -+|++. .|.+.+.... .. +...|+.+.++... .+-..+. ++..|++
T Consensus 15 ~~i~~~sG~~a~~~~~~~~~~~g--~~v~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~~~~~~v~~- 89 (331)
T 1pff_A 15 ACAATASGMGAIAASVWTFLKAG--DHLISD--DCLYGCTHALFEHQLRKFGVEVDFIDMAVPGNIEKHLKPNTRIVYF- 89 (331)
T ss_dssp EEEEESSHHHHHHHHHHHHCCTT--CEEEEE--SCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHTCCTTEEEEEE-
T ss_pred eEEEeCChHHHHHHHHHHhcCCC--CEEEEc--CCCcchHHHHHHHHHHhcCCEEEEeCCCCHHHHHHhhcCCCeEEEE-
Confidence 45555444556655555443333 456665 4666664333 33 45689999888532 2322332 3444444
Q ss_pred ceeEecCCCeecccchHHHHHHHhh-CCCCeee
Q 006256 530 ASSVLSNGTVCSRVGTACVAMVAYG-FHIPVLV 561 (653)
Q Consensus 530 AdaIlaNG~V~NKiGT~~lAl~Ak~-~~VPVyV 561 (653)
...--..|.+.. -..++-+|++ |++++++
T Consensus 90 ~~~~nptG~~~~---~~~i~~~~~~~~~~~li~ 119 (331)
T 1pff_A 90 ETPANPTLKVID---IEDAVKQARKQKDILVIV 119 (331)
T ss_dssp ESSCTTTCCCCC---HHHHHHHHTTSSSCEEEE
T ss_pred ECCCCCcCcccC---HHHHHHHHhhhcCCEEEE
Confidence 222223355543 4567778999 9988776
No 289
>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*
Probab=28.97 E-value=1.7e+02 Score=29.60 Aligned_cols=108 Identities=13% Similarity=0.101 Sum_probs=54.8
Q ss_pred CEEEEeCChHHHHHH-HHHHH-HcCCeeEEEEeCCCCCch--------HHHHHHHHHhC-C----CC---EEEE-cc---
Q 006256 456 DVLLTYGSSSAVEMI-LQHAH-ELGKQFRVVIVDSRPKHE--------GKLLLRRLVRK-G----LS---CTYT-HI--- 513 (653)
Q Consensus 456 dvILT~g~Ss~Ve~v-L~~A~-e~gk~f~ViV~ESRP~~E--------G~~La~eL~~~-G----I~---vT~I-~D--- 513 (653)
.+||..|-+.-|..- ++.+. ++| .+|++++-.+... -..+...|.+. + -. ++++ .|
T Consensus 3 m~vlVTGatG~iG~~l~~~L~~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d 80 (397)
T 1gy8_A 3 MRVLVCGGAGYIGSHFVRALLRDTN--HSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRN 80 (397)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCC--CEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTC
T ss_pred CEEEEECCCCHHHHHHHHHHHHhCC--CEEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCCC
Confidence 467777766555433 34444 555 5777775433221 22332223322 1 12 3333 33
Q ss_pred -chHHHHhh--h-ccEEEEcceeEecCC--------CeecccchHHHHHHHhhCCCCeeeeccc
Q 006256 514 -NAISYIIH--E-VTRVFLGASSVLSNG--------TVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (653)
Q Consensus 514 -sAv~~iM~--~-Vd~VllGAdaIlaNG--------~V~NKiGT~~lAl~Ak~~~VPVyV~aet 565 (653)
..+..++. . +|.||--|-...... --+|-.||..+.-+|+.+++.-+|.+.+
T Consensus 81 ~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~iv~~SS 144 (397)
T 1gy8_A 81 EDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSS 144 (397)
T ss_dssp HHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhCCCEEEEECC
Confidence 24455565 3 666665443211000 0135679999999999999865555444
No 290
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=28.91 E-value=1.2e+02 Score=29.18 Aligned_cols=20 Identities=30% Similarity=0.310 Sum_probs=11.1
Q ss_pred HHHHHHHHcCCeeEEEEeCC
Q 006256 469 MILQHAHELGKQFRVVIVDS 488 (653)
Q Consensus 469 ~vL~~A~e~gk~f~ViV~ES 488 (653)
.+++.+.+.|-..+|++.++
T Consensus 19 ~l~~~L~~~g~~V~vv~T~~ 38 (189)
T 2ejb_A 19 KLLQVLEELDFSVDLVISRN 38 (189)
T ss_dssp HHHHHHHHTTCEEEEEECHH
T ss_pred HHHHHHHHCCCEEEEEEChh
Confidence 34455555566666666554
No 291
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=28.88 E-value=2.6e+02 Score=28.67 Aligned_cols=51 Identities=22% Similarity=0.255 Sum_probs=31.7
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~ 512 (653)
.+++|.|.+.++..+++...+.| -+|++. .|.+.+... .+...|+.+..+.
T Consensus 110 ~i~~t~G~~~al~~~~~~l~~~g--d~Vlv~--~p~y~~~~~--~~~~~g~~~~~v~ 160 (425)
T 2r2n_A 110 DLCVTSGSQQGLCKVFEMIINPG--DNVLLD--EPAYSGTLQ--SLHPLGCNIINVA 160 (425)
T ss_dssp EEEEESSHHHHHHHHHHHHCCTT--CEEEEE--SSCCHHHHH--HHGGGTCEEEEEC
T ss_pred cEEEeCcHHHHHHHHHHHhCCCC--CEEEEe--CCCcHHHHH--HHHHcCCEEEEeC
Confidence 57777777778866666554334 355554 466766443 3455788877764
No 292
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=28.76 E-value=2.2e+02 Score=28.68 Aligned_cols=55 Identities=9% Similarity=0.073 Sum_probs=28.9
Q ss_pred CCCEEE--EeCChHHHHHHHHHHHH-cCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc
Q 006256 454 DGDVLL--TYGSSSAVEMILQHAHE-LGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (653)
Q Consensus 454 dGdvIL--T~g~Ss~Ve~vL~~A~e-~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~ 512 (653)
...+++ |.|.+.++..++..+.. .+..-+|++.+ |.+.+..- .+...|..+..+.
T Consensus 94 ~~~i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~--p~~~~~~~--~~~~~g~~~~~~~ 151 (401)
T 7aat_A 94 SGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPK--PSWGNHTP--IFRDAGLQLQAYR 151 (401)
T ss_dssp TTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEE--SCCTTHHH--HHHHTTCEEEEEE
T ss_pred cCceEEEecCcchHHHHHHHHHHHHhccCCCEEEEcC--CCchhHHH--HHHHcCCeeEeee
Confidence 445655 77777776544443321 12223555543 66655432 3345687777765
No 293
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=28.73 E-value=1.4e+02 Score=29.02 Aligned_cols=71 Identities=17% Similarity=0.205 Sum_probs=40.8
Q ss_pred EEEEeCChHHHHHHHHHHHHcCCeeEEEEeC-CCCCchHHHHHHHHHhCCCCEEEEccc----------hHHHHhh--hc
Q 006256 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVD-SRPKHEGKLLLRRLVRKGLSCTYTHIN----------AISYIIH--EV 523 (653)
Q Consensus 457 vILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~E-SRP~~EG~~La~eL~~~GI~vT~I~Ds----------Av~~iM~--~V 523 (653)
.||..|.++....+|....+....+.|.++= .+|...+.+ ...+.|||+.++... .+...+. ++
T Consensus 7 ~vl~sG~g~~~~~~l~~l~~~~l~~~I~~Vit~~~~~~v~~---~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 83 (212)
T 3av3_A 7 AVFASGSGTNFQAIVDAAKRGDLPARVALLVCDRPGAKVIE---RAARENVPAFVFSPKDYPSKAAFESEILRELKGRQI 83 (212)
T ss_dssp EEECCSSCHHHHHHHHHHHTTCCCEEEEEEEESSTTCHHHH---HHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTC
T ss_pred EEEEECCcHHHHHHHHHHHhCCCCCeEEEEEeCCCCcHHHH---HHHHcCCCEEEeCcccccchhhhHHHHHHHHHhcCC
Confidence 4677788888777776655432234543222 335544443 445689999876432 3334444 57
Q ss_pred cEEEEcc
Q 006256 524 TRVFLGA 530 (653)
Q Consensus 524 d~VllGA 530 (653)
|.+++-+
T Consensus 84 Dliv~a~ 90 (212)
T 3av3_A 84 DWIALAG 90 (212)
T ss_dssp CEEEESS
T ss_pred CEEEEch
Confidence 8777654
No 294
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=28.56 E-value=1.3e+02 Score=25.90 Aligned_cols=79 Identities=11% Similarity=0.052 Sum_probs=45.7
Q ss_pred eeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHH-hh--hccEEEEcceeEecCCCeecccchHHHHHHHhh-C
Q 006256 480 QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYI-IH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG-F 555 (653)
Q Consensus 480 ~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~i-M~--~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~-~ 555 (653)
..+|+|+|..+.. ...+...|...|+.|....+..-+.- +. ..|.||+..+- .+ .-|.-.+..+-+. .
T Consensus 3 ~~~ILivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dliild~~l--~~-----~~g~~~~~~l~~~~~ 74 (155)
T 1qkk_A 3 APSVFLIDDDRDL-RKAMQQTLELAGFTVSSFASATEALAGLSADFAGIVISDIRM--PG-----MDGLALFRKILALDP 74 (155)
T ss_dssp -CEEEEECSCHHH-HHHHHHHHHHTTCEEEEESCHHHHHHTCCTTCCSEEEEESCC--SS-----SCHHHHHHHHHHHCT
T ss_pred CCEEEEEeCCHHH-HHHHHHHHHHcCcEEEEECCHHHHHHHHHhCCCCEEEEeCCC--CC-----CCHHHHHHHHHhhCC
Confidence 4578888877643 33445677788888776554322221 22 47888887542 22 2243344444443 4
Q ss_pred CCCeeeecccc
Q 006256 556 HIPVLVCCEAY 566 (653)
Q Consensus 556 ~VPVyV~aety 566 (653)
++|+++++...
T Consensus 75 ~~pii~ls~~~ 85 (155)
T 1qkk_A 75 DLPMILVTGHG 85 (155)
T ss_dssp TSCEEEEECGG
T ss_pred CCCEEEEECCC
Confidence 79999988654
No 295
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=28.28 E-value=1.4e+02 Score=25.95 Aligned_cols=80 Identities=19% Similarity=0.216 Sum_probs=46.7
Q ss_pred CCeeEEEEeCCCCCchHHHHHHHHHhCCCCEE-EEccc--hHHHHhh---hccEEEEcceeEecCCCeecccchHHHHHH
Q 006256 478 GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCT-YTHIN--AISYIIH---EVTRVFLGASSVLSNGTVCSRVGTACVAMV 551 (653)
Q Consensus 478 gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT-~I~Ds--Av~~iM~---~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~ 551 (653)
+..++|+|+|..+.. ...+...|.+.|+.+. ...+. ++..+-. ..|+||+..+- .+ .-|--.+..+
T Consensus 34 ~~~~~Ilivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~l--~~-----~~g~~~~~~l 105 (157)
T 3hzh_A 34 GIPFNVLIVDDSVFT-VKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITM--PK-----MDGITCLSNI 105 (157)
T ss_dssp TEECEEEEECSCHHH-HHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSC--SS-----SCHHHHHHHH
T ss_pred CCceEEEEEeCCHHH-HHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEEeccC--CC-----ccHHHHHHHH
Confidence 456789999887653 3344567788898886 33332 2222222 56888887542 22 2233333333
Q ss_pred Hh-hCCCCeeeeccc
Q 006256 552 AY-GFHIPVLVCCEA 565 (653)
Q Consensus 552 Ak-~~~VPVyV~aet 565 (653)
-+ ..++|+++++..
T Consensus 106 r~~~~~~~ii~ls~~ 120 (157)
T 3hzh_A 106 MEFDKNARVIMISAL 120 (157)
T ss_dssp HHHCTTCCEEEEESC
T ss_pred HhhCCCCcEEEEecc
Confidence 33 347999998864
No 296
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=28.28 E-value=42 Score=34.97 Aligned_cols=71 Identities=14% Similarity=0.226 Sum_probs=45.2
Q ss_pred ccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc---c-chHHHHhhhccEEE
Q 006256 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH---I-NAISYIIHEVTRVF 527 (653)
Q Consensus 452 I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~---D-sAv~~iM~~Vd~Vl 527 (653)
+..|.+|+..|.+..-.++++.|++.| ++|++++..|...+..++ + -.++. | .++..+..++|.|.
T Consensus 9 ~~~~~~IlIlG~G~lg~~la~aa~~lG--~~viv~d~~~~~p~~~~a----d----~~~~~~~~d~~~l~~~~~~~dvi~ 78 (377)
T 3orq_A 9 LKFGATIGIIGGGQLGKMMAQSAQKMG--YKVVVLDPSEDCPCRYVA----H----EFIQAKYDDEKALNQLGQKCDVIT 78 (377)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCTTCTTGGGS----S----EEEECCTTCHHHHHHHHHHCSEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCChhhhhC----C----EEEECCCCCHHHHHHHHHhCCcce
Confidence 456889999999987767788888765 577888876664443332 1 12221 1 23555556788777
Q ss_pred Eccee
Q 006256 528 LGASS 532 (653)
Q Consensus 528 lGAda 532 (653)
.+-+.
T Consensus 79 ~~~E~ 83 (377)
T 3orq_A 79 YEFEN 83 (377)
T ss_dssp ESSTT
T ss_pred ecccc
Confidence 76543
No 297
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*
Probab=28.22 E-value=5.4e+02 Score=26.92 Aligned_cols=109 Identities=16% Similarity=0.168 Sum_probs=67.4
Q ss_pred HHHhccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCC------C------------chHHHHHHHHHhC--CCC
Q 006256 448 AVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRP------K------------HEGKLLLRRLVRK--GLS 507 (653)
Q Consensus 448 a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP------~------------~EG~~La~eL~~~--GI~ 507 (653)
+.+.|. +..||.+|.+.+=..+++.+...|.. ++.++|... . .-...++..|.+. ++.
T Consensus 28 g~~kL~-~~~VlIvGaGGlGs~va~~La~aGVg-~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~inP~v~ 105 (340)
T 3rui_A 28 NLDIIK-NTKVLLLGAGTLGCYVSRALIAWGVR-KITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMD 105 (340)
T ss_dssp CHHHHH-TCEEEEECCSHHHHHHHHHHHHTTCC-EEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHHCTTCE
T ss_pred hHHHHh-CCEEEEECCCHHHHHHHHHHHHcCCC-EEEEecCCEeccccccccccCChhhcChHHHHHHHHHHHHhCCCCE
Confidence 334443 57899999886655556666666865 333333211 1 1122344666654 566
Q ss_pred EEEEcc-------------------chHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeecccccc
Q 006256 508 CTYTHI-------------------NAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKF 568 (653)
Q Consensus 508 vT~I~D-------------------sAv~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~aetyKf 568 (653)
++.+.. ..+..++.++|.||...|... --+.+.-+|..+++|++-.+ +.|
T Consensus 106 v~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~l~~~DlVvd~tDn~~---------tR~lin~~c~~~~~plI~aa--~G~ 174 (340)
T 3rui_A 106 ATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRE---------SRWLPSLLSNIENKTVINAA--LGF 174 (340)
T ss_dssp EEEECCCCCCTTSCCSCHHHHHHHHHHHHHHHHHCSEEEECCSSTG---------GGHHHHHHHHHTTCEEEEEE--ECS
T ss_pred EEEEeccccccCcccchhhhhcCCHHHHHhhhccCCEEEecCCCHH---------HHHHHHHHHHHcCCcEEEee--ecc
Confidence 666642 124556788999998877543 24788899999999998754 444
Q ss_pred c
Q 006256 569 H 569 (653)
Q Consensus 569 ~ 569 (653)
.
T Consensus 175 ~ 175 (340)
T 3rui_A 175 D 175 (340)
T ss_dssp S
T ss_pred e
Confidence 3
No 298
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=28.21 E-value=2.8e+02 Score=27.80 Aligned_cols=104 Identities=13% Similarity=0.095 Sum_probs=52.9
Q ss_pred CCEEEEeCChHHHHHHHHHHHHc--------CCeeEEEEeCCCCCchHHHHH-HHHHhC----------CCCEEEEccc-
Q 006256 455 GDVLLTYGSSSAVEMILQHAHEL--------GKQFRVVIVDSRPKHEGKLLL-RRLVRK----------GLSCTYTHIN- 514 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~e~--------gk~f~ViV~ESRP~~EG~~La-~eL~~~----------GI~vT~I~Ds- 514 (653)
..+++|-|.+.+++.+|+.+... ...-+|++.+ |.+.|..+. ..+... ...+..+..+
T Consensus 94 ~~v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 171 (392)
T 3ruy_A 94 EMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCE--DNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYGD 171 (392)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEET--TCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECTTC
T ss_pred CEEEEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEc--CCcCCCCHhhhhccCChhhccccCCCCCCCeeeCccc
Confidence 35677776677887777765543 1223555543 223232222 122111 1134555432
Q ss_pred --hHHHHhh-hccEEEEcceeEecCCCeecccc-hHHHHHHHhhCCCCeee
Q 006256 515 --AISYIIH-EVTRVFLGASSVLSNGTVCSRVG-TACVAMVAYGFHIPVLV 561 (653)
Q Consensus 515 --Av~~iM~-~Vd~VllGAdaIlaNG~V~NKiG-T~~lAl~Ak~~~VPVyV 561 (653)
.+-..+. ++.+|++-. ---..|.++..-. --.|+-+|++|++.+++
T Consensus 172 ~~~l~~~l~~~~~~v~~~~-~~nptG~~~~~~~~l~~i~~l~~~~~~~li~ 221 (392)
T 3ruy_A 172 LEALKAAITPNTAAFILEP-IQGEAGINIPPAGFLKEALEVCKKENVLFVA 221 (392)
T ss_dssp HHHHHHHCCTTEEEEEECS-SBSTTTSBCCCTTHHHHHHHHHHTTTCEEEE
T ss_pred HHHHHHHhccCeEEEEEeC-ccCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 2333332 444555432 2223366665666 66788899999988776
No 299
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Probab=28.16 E-value=1.7e+02 Score=28.53 Aligned_cols=99 Identities=17% Similarity=0.245 Sum_probs=57.5
Q ss_pred CCCEEEEeCChHHHHHHH-HHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEE-cc----chHHHHhh------
Q 006256 454 DGDVLLTYGSSSAVEMIL-QHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT-HI----NAISYIIH------ 521 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL-~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I-~D----sAv~~iM~------ 521 (653)
.|.+||..|-|+-+...+ +.+.++| .+|+++..++......+..+|.+.|..+.++ +| ..+..++.
T Consensus 28 ~~k~vlVTGas~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 105 (283)
T 1g0o_A 28 EGKVALVTGAGRGIGREMAMELGRRG--CKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIF 105 (283)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 467888888877664433 3444555 5688776654333345567787788777765 34 23333333
Q ss_pred -hccEEEEcceeEecCCCe-------------ecccchHHHHHHHhhC
Q 006256 522 -EVTRVFLGASSVLSNGTV-------------CSRVGTACVAMVAYGF 555 (653)
Q Consensus 522 -~Vd~VllGAdaIlaNG~V-------------~NKiGT~~lAl~Ak~~ 555 (653)
++|.||--|-. ...+.+ +|-.|++.+.-++..+
T Consensus 106 g~iD~lv~~Ag~-~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~ 152 (283)
T 1g0o_A 106 GKLDIVCSNSGV-VSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKH 152 (283)
T ss_dssp SCCCEEEECCCC-CCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCc-CCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 46777665532 222221 3567777777666554
No 300
>2a3n_A Putative glucosamine-fructose-6-phosphate aminotr; structural genomics, joint center for structural genomics; HET: MSE; 1.23A {Salmonella typhimurium}
Probab=28.13 E-value=3.2e+02 Score=28.08 Aligned_cols=36 Identities=17% Similarity=0.054 Sum_probs=29.1
Q ss_pred hHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEE
Q 006256 493 EGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFL 528 (653)
Q Consensus 493 EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~Vll 528 (653)
+-.+.++.+.+.|+++..|+++.-+.+.+.+|.+|.
T Consensus 117 e~~~a~~~ak~~Ga~vi~IT~~~~S~La~~ad~~l~ 152 (355)
T 2a3n_A 117 ESVAIAEWCKAQGIRVVAITKNADSPLAQAATWHIP 152 (355)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCTTSHHHHTCSEEEE
T ss_pred HHHHHHHHHHHCCCeEEEEECCCCChhhHhCCEEEE
Confidence 345556888889999999999887888888998875
No 301
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=28.05 E-value=1.6e+02 Score=30.74 Aligned_cols=102 Identities=13% Similarity=0.073 Sum_probs=44.6
Q ss_pred CEEEEeCChHHHHHHHHHHHH-cCCeeEEEEeCCCCCchHHHHH-HHHH--------hCCCC------EEEEc--c-chH
Q 006256 456 DVLLTYGSSSAVEMILQHAHE-LGKQFRVVIVDSRPKHEGKLLL-RRLV--------RKGLS------CTYTH--I-NAI 516 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e-~gk~f~ViV~ESRP~~EG~~La-~eL~--------~~GI~------vT~I~--D-sAv 516 (653)
.+++|.|-+.+++.+|+.|.. .++ -+|++.+ |.+-|.... ..+. ..|++ +..+. | ..+
T Consensus 115 ~v~~~~gg~eA~~~al~~ar~~~~~-~~vi~~~--~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l 191 (453)
T 2cy8_A 115 KLRFTGSGTETTLLALRVARAFTGR-RMILRFE--GHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRPDDIEGM 191 (453)
T ss_dssp EEEEESCHHHHHHHHHHHHHHHHCC-CEEEEEC--C----------------------------CGGGEEEECTTCHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHHHhhCC-CEEEEEc--CCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCCCCHHHH
Confidence 466777777788777776432 233 3677777 555554432 1111 13553 33332 2 233
Q ss_pred HHHhhh---ccEEEEcceeEecC-CCeecccch-HHHHHHHhhCCCCeee
Q 006256 517 SYIIHE---VTRVFLGASSVLSN-GTVCSRVGT-ACVAMVAYGFHIPVLV 561 (653)
Q Consensus 517 ~~iM~~---Vd~VllGAdaIlaN-G~V~NKiGT-~~lAl~Ak~~~VPVyV 561 (653)
-..+.+ -.++|+ ++-+..+ |.++..-+- -.|+-+|++|++.+++
T Consensus 192 e~~l~~~~~~~~~vi-~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~ 240 (453)
T 2cy8_A 192 REVFANHGSDIAAFI-AEPVGSHFGVTPVSDSFLREGAELARQYGALFIL 240 (453)
T ss_dssp HHHHHHHGGGEEEEE-ECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHhcCCCEEEEE-ECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 344432 112322 3334333 334433332 3466789999996654
No 302
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=28.03 E-value=1.8e+02 Score=29.18 Aligned_cols=103 Identities=11% Similarity=0.089 Sum_probs=55.6
Q ss_pred cCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc------hHHHHhh----h
Q 006256 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN------AISYIIH----E 522 (653)
Q Consensus 453 ~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds------Av~~iM~----~ 522 (653)
....+++|.|.+.++..+++.+.+.|+ -+|++.+ |.+.+.. ..+...|+.+..+... .+..+-. +
T Consensus 98 ~~~~i~~~~g~~~al~~~~~~l~~~g~-d~vl~~~--p~~~~~~--~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~ 172 (398)
T 3ele_A 98 NADNLYMTMGAAASLSICFRALTSDAY-DEFITIA--PYFPEYK--VFVNAAGARLVEVPADTEHFQIDFDALEERINAH 172 (398)
T ss_dssp CGGGEEEESSHHHHHHHHHHHHCCSTT-CEEEEES--SCCTHHH--HHHHHTTCEEEEECCCTTTSSCCHHHHHHTCCTT
T ss_pred ChHHEEEccCHHHHHHHHHHHHcCCCC-CEEEEeC--CCchhhH--HHHHHcCCEEEEEecCCcCCcCCHHHHHHHhCcC
Confidence 345678888877788776666644441 3555543 4555543 2344578888888532 1222222 3
Q ss_pred ccEEEEcceeEecCCCeecccchHHHHHHHhh------CCCCeee
Q 006256 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYG------FHIPVLV 561 (653)
Q Consensus 523 Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~------~~VPVyV 561 (653)
+.+|++- .---..|.++..---..++-+|+. |++.+++
T Consensus 173 ~~~v~~~-~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~ 216 (398)
T 3ele_A 173 TRGVIIN-SPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIA 216 (398)
T ss_dssp EEEEEEC-SSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEE
T ss_pred CCEEEEc-CCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEE
Confidence 4445442 222233444443334455567777 8887665
No 303
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=27.93 E-value=2.7e+02 Score=27.72 Aligned_cols=97 Identities=12% Similarity=0.060 Sum_probs=49.3
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc---hHHHHhhhc---cEEEEc
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---AISYIIHEV---TRVFLG 529 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds---Av~~iM~~V---d~VllG 529 (653)
+.|++-+.+.++..+++.+.+.| -.|++. .|.+.+.. ..+...|..+..+... .+-..+.+. .++++=
T Consensus 101 ~~i~~~sGt~a~~~~~~~~~~~g--d~v~~~--~~~~~~~~--~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~ 174 (384)
T 1bs0_A 101 RALLFISGFAANQAVIAAMMAKE--DRIAAD--RLSHASLL--EAASLSPSQLRRFAHNDVTHLARLLASPCPGQQMVVT 174 (384)
T ss_dssp EEEEESCHHHHHHHHHHHHCCTT--CEEEEE--TTCCHHHH--HHHHTSSSEEEEECTTCHHHHHHHHHSCCSSCEEEEE
T ss_pred cEEEeCCcHHHHHHHHHHhCCCC--cEEEEc--ccccHHHH--HHHHHcCCCEEEeCCCCHHHHHHHHHhcCCCCeEEEE
Confidence 34544444666666555443223 344443 35554332 3344568888777522 233334332 333332
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 530 AdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
..---..|.++. --.++-+|++|++.+++
T Consensus 175 ~~~~nptG~~~~---l~~i~~l~~~~~~~li~ 203 (384)
T 1bs0_A 175 EGVFSMDGDSAP---LAEIQQVTQQHNGWLMV 203 (384)
T ss_dssp ESBCTTTCCBCC---HHHHHHHHHHTTCEEEE
T ss_pred eCCCCCCCCccC---HHHHHHHHHHcCcEEEE
Confidence 222233465554 35677789999987665
No 304
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A {Vibrio fischeri} PDB: 3pvz_A*
Probab=27.93 E-value=2e+02 Score=29.94 Aligned_cols=111 Identities=9% Similarity=0.007 Sum_probs=61.2
Q ss_pred CCCEEEEeCChHHHHHHHH-HHHHcCCeeEEEEeCCCCCchHHHHHHHHHhC----CCCEEEE----ccc-hHHHHhh--
Q 006256 454 DGDVLLTYGSSSAVEMILQ-HAHELGKQFRVVIVDSRPKHEGKLLLRRLVRK----GLSCTYT----HIN-AISYIIH-- 521 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~-~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~----GI~vT~I----~Ds-Av~~iM~-- 521 (653)
.|.+||..|-+..+..-|. .+.+.| ..+|++++-.+ ..-..+..+|.+. +..++++ .|. .+..++.
T Consensus 34 ~~k~vLVTGatG~IG~~l~~~L~~~g-~~~V~~~~r~~-~~~~~~~~~l~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 111 (399)
T 3nzo_A 34 SQSRFLVLGGAGSIGQAVTKEIFKRN-PQKLHVVDISE-NNMVELVRDIRSSFGYINGDFQTFALDIGSIEYDAFIKADG 111 (399)
T ss_dssp HTCEEEEETTTSHHHHHHHHHHHTTC-CSEEEEECSCH-HHHHHHHHHHHHHTCCCSSEEEEECCCTTSHHHHHHHHHCC
T ss_pred CCCEEEEEcCChHHHHHHHHHHHHCC-CCEEEEEECCc-chHHHHHHHHHHhcCCCCCcEEEEEEeCCCHHHHHHHHHhC
Confidence 3678888887655544443 344444 24677776432 2223344555542 2345554 232 2334442
Q ss_pred hccEEEEcceeEec----C------CCeecccchHHHHHHHhhCCCCeeeecccc
Q 006256 522 EVTRVFLGASSVLS----N------GTVCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (653)
Q Consensus 522 ~Vd~VllGAdaIla----N------G~V~NKiGT~~lAl~Ak~~~VPVyV~aety 566 (653)
++|.||--|-.... | .--.|-.||..++-+|+.+++.-+|...+.
T Consensus 112 ~~D~Vih~Aa~~~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~gv~r~V~iSS~ 166 (399)
T 3nzo_A 112 QYDYVLNLSALKHVRSEKDPFTLMRMIDVNVFNTDKTIQQSIDAGAKKYFCVSTD 166 (399)
T ss_dssp CCSEEEECCCCCCGGGGSSHHHHHHHHHHHTHHHHHHHHHHHHTTCSEEEEECCS
T ss_pred CCCEEEECCCcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 67877754421110 0 112567899999999999998766665553
No 305
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=27.84 E-value=1.7e+02 Score=24.25 Aligned_cols=78 Identities=13% Similarity=0.195 Sum_probs=43.0
Q ss_pred eeEEEEeCCCCCchHHHHHHHHHhCCCC-EEEEccchHH--HHhh--hccEEEEcceeEecCCCeecccchHHHHHHHhh
Q 006256 480 QFRVVIVDSRPKHEGKLLLRRLVRKGLS-CTYTHINAIS--YIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG 554 (653)
Q Consensus 480 ~f~ViV~ESRP~~EG~~La~eL~~~GI~-vT~I~DsAv~--~iM~--~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~ 554 (653)
.++|+|+|..+.. ...+...|.+.|.. +....+..-+ .+-. ..|.||+..+ +.++ -|.-.+..+-+.
T Consensus 5 ~~~iLivdd~~~~-~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~--~p~~-----~g~~~~~~lr~~ 76 (129)
T 3h1g_A 5 SMKLLVVDDSSTM-RRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWN--MPEM-----NGLDLVKKVRSD 76 (129)
T ss_dssp -CCEEEECSCHHH-HHHHHHHHHHTTCCCEEEESSHHHHHHHHHHCTTCCEEEECSC--CSSS-----CHHHHHHHHHTS
T ss_pred CcEEEEEeCCHHH-HHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhCCCCCEEEEeCC--CCCC-----CHHHHHHHHHhc
Confidence 4578888877643 33344677788886 4444433222 2222 4788887543 3332 244444444332
Q ss_pred ---CCCCeeeeccc
Q 006256 555 ---FHIPVLVCCEA 565 (653)
Q Consensus 555 ---~~VPVyV~aet 565 (653)
.++|+++++..
T Consensus 77 ~~~~~~pii~~s~~ 90 (129)
T 3h1g_A 77 SRFKEIPIIMITAE 90 (129)
T ss_dssp TTCTTCCEEEEESC
T ss_pred CCCCCCeEEEEeCC
Confidence 37899998864
No 306
>2ri0_A Glucosamine-6-phosphate deaminase; carbohydrate metabolism,; HET: BTB; 1.60A {Streptococcus mutans} PDB: 2ri1_A*
Probab=27.75 E-value=1.7e+02 Score=28.10 Aligned_cols=91 Identities=13% Similarity=0.120 Sum_probs=52.5
Q ss_pred HHHHhccC-CCEEEEeCChHHHHHHHHHHHHcC---CeeEEEEeC---CCC----CchHHHHHHHHHh-CCCCEEEEccc
Q 006256 447 HAVTKIRD-GDVLLTYGSSSAVEMILQHAHELG---KQFRVVIVD---SRP----KHEGKLLLRRLVR-KGLSCTYTHIN 514 (653)
Q Consensus 447 ~a~~~I~d-GdvILT~g~Ss~Ve~vL~~A~e~g---k~f~ViV~E---SRP----~~EG~~La~eL~~-~GI~vT~I~Ds 514 (653)
+..+.|.+ ++ ++-.+++++...++....+.+ .+.+|+-++ +-| ...-..+.+.|.+ .+++..++.+.
T Consensus 20 ~l~~~i~~~~~-~i~ls~G~T~~~~~~~L~~~~~~~~~v~v~~ldEr~gv~~~~~~sn~~~~~~~l~~~~~~~~~~~~~~ 98 (234)
T 2ri0_A 20 MLEEEITFGAK-TLGLATGSTPLELYKEIRESHLDFSDMVSINLDEYVGLSADDKQSYAYFMKQNLFAAKPFKKSYLPNG 98 (234)
T ss_dssp HHHHHHHTTCC-EEEECCSSTTHHHHHHHHTSCCCCTTCEEEESEEETTCCTTSTTSHHHHHHHHTTTTSCCSEEECCCT
T ss_pred HHHHHHHhCCC-EEEEcCCCCHHHHHHHHHhcCCChhheEEEeCeeecCCCCCChHHHHHHHHHHHhccCCCcHhhcCCC
Confidence 33444443 46 777888887777777665422 456777666 233 2222334455554 48888887653
Q ss_pred hH----------HHHhh--hccEEEEcceeEecCCCeec
Q 006256 515 AI----------SYIIH--EVTRVFLGASSVLSNGTVCS 541 (653)
Q Consensus 515 Av----------~~iM~--~Vd~VllGAdaIlaNG~V~N 541 (653)
.. ...+. .+|.+|+|-- .||.+..
T Consensus 99 ~~~~~~~~~~~y~~~i~~~~~Dl~llGiG---~dgh~a~ 134 (234)
T 2ri0_A 99 LAADLAKETEYYDQILAQYPIDLQILGIG---RNAHIGF 134 (234)
T ss_dssp TCSCHHHHHHHHHHHHHHSCCSEEEECCC---TTSCBTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCEEEEccC---CCCCchh
Confidence 21 11122 4899999854 6766543
No 307
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=27.62 E-value=1.1e+02 Score=26.28 Aligned_cols=79 Identities=14% Similarity=0.165 Sum_probs=41.2
Q ss_pred CeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHH-HHhh--hccEEEEcceeEecCCCeecccchHHHHHHHh--
Q 006256 479 KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAIS-YIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAY-- 553 (653)
Q Consensus 479 k~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~-~iM~--~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak-- 553 (653)
+..+|+|+|..+.. ...+...|.+.|..|....+..-+ ..+. ..|.||+..+ +.++ -|.-.+..+-+
T Consensus 13 ~~~~iLivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--mp~~-----~g~~~~~~lr~~~ 84 (143)
T 3m6m_D 13 RSMRMLVADDHEAN-RMVLQRLLEKAGHKVLCVNGAEQVLDAMAEEDYDAVIVDLH--MPGM-----NGLDMLKQLRVMQ 84 (143)
T ss_dssp --CEEEEECSSHHH-HHHHHHHHHC--CEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSS-----CHHHHHHHHHHHH
T ss_pred ccceEEEEeCCHHH-HHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEeCC--CCCC-----CHHHHHHHHHhch
Confidence 45678888876643 223345667778877765543221 1222 4788888543 3332 23333333321
Q ss_pred ---hCCCCeeeeccc
Q 006256 554 ---GFHIPVLVCCEA 565 (653)
Q Consensus 554 ---~~~VPVyV~aet 565 (653)
...+|+++++..
T Consensus 85 ~~~~~~~pii~~s~~ 99 (143)
T 3m6m_D 85 ASGMRYTPVVVLSAD 99 (143)
T ss_dssp HTTCCCCCEEEEESC
T ss_pred hccCCCCeEEEEeCC
Confidence 135899998764
No 308
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=27.56 E-value=1.9e+02 Score=28.71 Aligned_cols=98 Identities=8% Similarity=0.116 Sum_probs=51.3
Q ss_pred CEEEEeCC-hHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc--------hHHHHhh-hccE
Q 006256 456 DVLLTYGS-SSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN--------AISYIIH-EVTR 525 (653)
Q Consensus 456 dvILT~g~-Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds--------Av~~iM~-~Vd~ 525 (653)
++|++.+. +.+++.+++.+.+.| -+|++.+. +++ |..+...+...|+.+..+... .+-..+. ++.+
T Consensus 72 ~~i~~~~ggt~al~~~~~~~~~~g--d~vi~~~~-~~~-~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~~ 147 (376)
T 3f0h_A 72 KAVFMTCSSTGSMEAVVMNCFTKK--DKVLVIDG-GSF-GHRFVQLCEIHEIPYVALKLEHGKKLTKEKLYEYDNQNFTG 147 (376)
T ss_dssp EEEEESSCHHHHHHHHHHHHCCTT--CCEEEEES-SHH-HHHHHHHHHHTTCCEEEEECCTTCCCCHHHHHTTTTSCCCE
T ss_pred eEEEEcCChhHHHHHHHHhccCCC--CeEEEEeC-Chh-hHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHhhccCceE
Confidence 45553344 456666665554333 34555432 222 344445566779888877422 1111121 3344
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 526 VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
|++- .-=-..|.++. --.|+-+|+.|++++++
T Consensus 148 v~~~-~~~nptG~~~~---l~~i~~l~~~~~~~li~ 179 (376)
T 3f0h_A 148 LLVN-VDETSTAVLYD---TMMIGEFCKKNNMFFVC 179 (376)
T ss_dssp EEEE-SEETTTTEECC---HHHHHHHHHHTTCEEEE
T ss_pred EEEe-cccCCcceecC---HHHHHHHHHHcCCEEEE
Confidence 4432 21223455544 55677889999998876
No 309
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2
Probab=27.50 E-value=92 Score=30.14 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=18.6
Q ss_pred ecccchHHHHHHHhhCCCCeeeecc
Q 006256 540 CSRVGTACVAMVAYGFHIPVLVCCE 564 (653)
Q Consensus 540 ~NKiGT~~lAl~Ak~~~VPVyV~ae 564 (653)
+|-.||..+.-+|+.+++.|+.+..
T Consensus 89 ~nv~~~~~l~~a~~~~~~~iv~~SS 113 (292)
T 1vl0_A 89 INAIGPKNLAAAAYSVGAEIVQIST 113 (292)
T ss_dssp HHTHHHHHHHHHHHHHTCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCeEEEech
Confidence 4667899999889888885555544
No 310
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=27.45 E-value=1.5e+02 Score=30.36 Aligned_cols=73 Identities=21% Similarity=0.300 Sum_probs=43.5
Q ss_pred EEEEeCChHHHHHHHHHHHHcCC-eeEEE-EeCCCCCchHHHHHHHHHhCCCCEEEEcc---------chHHHHhh--hc
Q 006256 457 VLLTYGSSSAVEMILQHAHELGK-QFRVV-IVDSRPKHEGKLLLRRLVRKGLSCTYTHI---------NAISYIIH--EV 523 (653)
Q Consensus 457 vILT~g~Ss~Ve~vL~~A~e~gk-~f~Vi-V~ESRP~~EG~~La~eL~~~GI~vT~I~D---------sAv~~iM~--~V 523 (653)
.||.-|+++.++.+|. +++.|. ..+|. |+-.+|...+ + ..+.|||+.+++. ..+...++ ++
T Consensus 99 ~vl~Sg~g~~l~~ll~-~~~~g~l~~~i~~Visn~~~~~~--~---A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~ 172 (292)
T 3lou_A 99 LIMVSKLEHCLADLLF-RWKMGELKMDIVGIVSNHPDFAP--L---AAQHGLPFRHFPITADTKAQQEAQWLDVFETSGA 172 (292)
T ss_dssp EEEECSCCHHHHHHHH-HHHHTSSCCEEEEEEESSSTTHH--H---HHHTTCCEEECCCCSSCHHHHHHHHHHHHHHHTC
T ss_pred EEEEcCCCcCHHHHHH-HHHcCCCCcEEEEEEeCcHHHHH--H---HHHcCCCEEEeCCCcCCHHHHHHHHHHHHHHhCC
Confidence 4777788899977655 444453 34433 3344555432 2 3467999998752 23444554 58
Q ss_pred cEEEEcce-eEec
Q 006256 524 TRVFLGAS-SVLS 535 (653)
Q Consensus 524 d~VllGAd-aIla 535 (653)
|.|++-.- .|+.
T Consensus 173 Dlivla~y~~il~ 185 (292)
T 3lou_A 173 ELVILARYMQVLS 185 (292)
T ss_dssp SEEEESSCCSCCC
T ss_pred CEEEecCchhhCC
Confidence 88887443 4543
No 311
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=27.31 E-value=74 Score=32.36 Aligned_cols=107 Identities=17% Similarity=0.132 Sum_probs=52.6
Q ss_pred ccCCCEEEEeCChHHHHHHHHHHHHcCC---eeEEEEeCCCCCchHHHHH-HH---HHhCCCCEEEEccc---------h
Q 006256 452 IRDGDVLLTYGSSSAVEMILQHAHELGK---QFRVVIVDSRPKHEGKLLL-RR---LVRKGLSCTYTHIN---------A 515 (653)
Q Consensus 452 I~dGdvILT~g~Ss~Ve~vL~~A~e~gk---~f~ViV~ESRP~~EG~~La-~e---L~~~GI~vT~I~Ds---------A 515 (653)
+....+|+|-|.+.++..+++.+.+.|. ..+|++.+ .|.+.|...+ .. +...+..+..+... .
T Consensus 96 ~~~~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~vi~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 174 (417)
T 3g7q_A 96 IEPQNIALTNGSQSAFFYLFNLFAGRRADGSTKKVLFPL-APEYIGYADSGLEDDLFVSARPNIELLPEGQFKYHVDFEH 174 (417)
T ss_dssp CCGGGEEEESCHHHHHHHHHHHHSBC----CCBEEEESS-CCCHHHHHC-----CCEEECCCEEEEEGGGEEEEECCGGG
T ss_pred CCcccEEEeCCcHHHHHHHHHHHcCCCccCCcceEEEeC-CCccccchhhccchhhhccccCcccccCCcccccccCHHH
Confidence 3445788888888888666665543322 23677654 4666665433 11 22334444444322 1
Q ss_pred HHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 516 ISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 516 v~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
+- +-+++.+|++- .---..|.++..---..|+-+|++|++.+++
T Consensus 175 l~-~~~~~~~v~~~-~p~NptG~~~~~~~~~~l~~~a~~~~~~li~ 218 (417)
T 3g7q_A 175 LH-IGEETGMICVS-RPTNPTGNVITDEELMKLDRLANQHNIPLVI 218 (417)
T ss_dssp CC-CCTTEEEEEEE-SSCTTTCCCCCHHHHHHHHHHHHHTTCCEEE
T ss_pred hc-cccCceEEEEC-CCCCCCCCccCHHHHHHHHHHHHHcCCEEEE
Confidence 11 11123333331 1112233333333345567789999998776
No 312
>1wx0_A Transaldolase; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferas; 2.27A {Thermus thermophilus HB8} SCOP: c.1.10.1
Probab=27.26 E-value=2.2e+02 Score=28.11 Aligned_cols=49 Identities=18% Similarity=0.272 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHH---cCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccch
Q 006256 464 SSAVEMILQHAHE---LGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA 515 (653)
Q Consensus 464 Ss~Ve~vL~~A~e---~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsA 515 (653)
|.-.+.++.+|++ ...++-|=|.=| .||.+.+++|.+.||+|.++..=+
T Consensus 69 a~d~e~~i~eA~~l~~~~~nv~IKIP~T---~eGl~A~~~L~~~GI~vN~TliFS 120 (223)
T 1wx0_A 69 ALEAEAMVAEGRRLAAIHPNIVVKLPTT---EEGLKACKRLSAEGIKVNMTLIFS 120 (223)
T ss_dssp CSSHHHHHHHHHHHHHHCTTEEEEEESS---HHHHHHHHHHHHTTCCEEEEEECS
T ss_pred cCCHHHHHHHHHHHHhhCCCEEEEeCCC---HHHHHHHHHHHHCCCcEEEEEeCC
Confidence 4444566666653 345555556555 599999999999999987765433
No 313
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A
Probab=27.09 E-value=2.4e+02 Score=28.40 Aligned_cols=72 Identities=11% Similarity=0.093 Sum_probs=45.2
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhC--CCCEEEEccchHHHHhhhccEEE
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRK--GLSCTYTHINAISYIIHEVTRVF 527 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~--GI~vT~I~DsAv~~iM~~Vd~Vl 527 (653)
.|.++|..|.+-+-..++..+.+.|-. +|+|+ +|-......++.++... ++.+..+....+...+.++|.||
T Consensus 126 ~~k~vlVlGaGG~g~aia~~L~~~G~~-~v~i~-~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVI 199 (283)
T 3jyo_A 126 KLDSVVQVGAGGVGNAVAYALVTHGVQ-KLQVA-DLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVV 199 (283)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCS-EEEEE-CSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEE
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCC-EEEEE-ECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEE
Confidence 467888888876655556666655542 44444 44444556677777654 45666665556666777788776
No 314
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=27.05 E-value=1.3e+02 Score=31.52 Aligned_cols=52 Identities=17% Similarity=0.230 Sum_probs=32.4
Q ss_pred CCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc
Q 006256 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~ 512 (653)
..+++|.|.+.++..+++.+.+.| -+|++.+ |.+.+... .+...|..+..+.
T Consensus 119 ~~v~~t~G~~~al~~~~~~l~~~g--d~Vlv~~--p~y~~~~~--~~~~~g~~~~~v~ 170 (447)
T 3b46_A 119 ENVTVTTGANEGILSCLMGLLNAG--DEVIVFE--PFFDQYIP--NIELCGGKVVYVP 170 (447)
T ss_dssp GGEEEESHHHHHHHHHHHHHCCTT--CEEEEEE--SCCTTHHH--HHHHTTCEEEEEE
T ss_pred hhEEEeCCHHHHHHHHHHHHcCCC--CEEEEeC--CCchhHHH--HHHHcCCEEEEEe
Confidence 367888777778877776664434 3566655 66666443 3445677776664
No 315
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}
Probab=26.95 E-value=1.4e+02 Score=29.36 Aligned_cols=103 Identities=11% Similarity=0.120 Sum_probs=56.3
Q ss_pred CEEEEeCChHHHHHH-HHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc--c-chHHHHhhhccEEEEcce
Q 006256 456 DVLLTYGSSSAVEMI-LQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH--I-NAISYIIHEVTRVFLGAS 531 (653)
Q Consensus 456 dvILT~g~Ss~Ve~v-L~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~--D-sAv~~iM~~Vd~VllGAd 531 (653)
.+||..|-+..+..- ++.+.++| .+|+++.-++... ..|.+.++.+.... | ..+..++..+|.||--|-
T Consensus 14 M~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~-----~~l~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a~ 86 (342)
T 2x4g_A 14 VKYAVLGATGLLGHHAARAIRAAG--HDLVLIHRPSSQI-----QRLAYLEPECRVAEMLDHAGLERALRGLDGVIFSAG 86 (342)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTT--CEEEEEECTTSCG-----GGGGGGCCEEEECCTTCHHHHHHHTTTCSEEEEC--
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC--CEEEEEecChHhh-----hhhccCCeEEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence 478888876555433 34455555 5677765444321 12333455443321 2 345666777888876553
Q ss_pred eEecC-CC-----eecccchHHHHHHHhhCCCCeeeeccc
Q 006256 532 SVLSN-GT-----VCSRVGTACVAMVAYGFHIPVLVCCEA 565 (653)
Q Consensus 532 aIlaN-G~-----V~NKiGT~~lAl~Ak~~~VPVyV~aet 565 (653)
..-.. .+ -+|-.||..+.-+|+.+++.-+|.+.+
T Consensus 87 ~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS 126 (342)
T 2x4g_A 87 YYPSRPRRWQEEVASALGQTNPFYAACLQARVPRILYVGS 126 (342)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHTCSCEEEECC
T ss_pred cCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECC
Confidence 22110 01 145678999999999889865665544
No 316
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=26.77 E-value=1.7e+02 Score=23.01 Aligned_cols=77 Identities=5% Similarity=0.117 Sum_probs=44.1
Q ss_pred EEEEeCCCCCchHHHHHHHHHhCCCCEEEEccch--HHHHhh-hccEEEEcceeEecCCCeecccchHHHHHHHhh---C
Q 006256 482 RVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA--ISYIIH-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG---F 555 (653)
Q Consensus 482 ~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsA--v~~iM~-~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~---~ 555 (653)
+|+++|..+.. ...+...|...|+.|....+.. +..+-. ..|.||+..+. .+ .-|...+..+.+. .
T Consensus 3 ~iliv~~~~~~-~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~~~dlii~d~~~--~~-----~~~~~~~~~l~~~~~~~ 74 (119)
T 2j48_A 3 HILLLEEEDEA-ATVVCEMLTAAGFKVIWLVDGSTALDQLDLLQPIVILMAWPP--PD-----QSCLLLLQHLREHQADP 74 (119)
T ss_dssp EEEEECCCHHH-HHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEECST--TC-----CTHHHHHHHHHHTCCCS
T ss_pred EEEEEeCCHHH-HHHHHHHHHhCCcEEEEecCHHHHHHHHHhcCCCEEEEecCC--CC-----CCHHHHHHHHHhccccC
Confidence 56777766543 2334566777888777665432 222222 47888876542 21 2244444445444 5
Q ss_pred CCCeeeecccc
Q 006256 556 HIPVLVCCEAY 566 (653)
Q Consensus 556 ~VPVyV~aety 566 (653)
++|+++++...
T Consensus 75 ~~~ii~~~~~~ 85 (119)
T 2j48_A 75 HPPLVLFLGEP 85 (119)
T ss_dssp SCCCEEEESSC
T ss_pred CCCEEEEeCCC
Confidence 79999988753
No 317
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2
Probab=26.66 E-value=61 Score=32.11 Aligned_cols=104 Identities=15% Similarity=0.143 Sum_probs=56.2
Q ss_pred EEEEeCChHHHHHH-HHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEE-cc----chHHHHhhh--ccEEEE
Q 006256 457 VLLTYGSSSAVEMI-LQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT-HI----NAISYIIHE--VTRVFL 528 (653)
Q Consensus 457 vILT~g~Ss~Ve~v-L~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I-~D----sAv~~iM~~--Vd~Vll 528 (653)
+||..|-+.-|..- ++.+.++| .+|++++-.........+..|...+ .++++ .| .++..++.. +|.||-
T Consensus 3 ~vlVTGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~l~~~~-~~~~~~~Dl~d~~~~~~~~~~~~~d~vih 79 (347)
T 1orr_A 3 KLLITGGCGFLGSNLASFALSQG--IDLIVFDNLSRKGATDNLHWLSSLG-NFEFVHGDIRNKNDVTRLITKYMPDSCFH 79 (347)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT--CEEEEEECCCSTTHHHHHHHHHTTC-CCEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred EEEEeCCCchhHHHHHHHHHhCC--CEEEEEeCCCccCchhhhhhhccCC-ceEEEEcCCCCHHHHHHHHhccCCCEEEE
Confidence 57777766555433 34444545 5677775322111223344555444 23332 23 345666777 888876
Q ss_pred cceeEecC-----C---CeecccchHHHHHHHhhCCCC-eeeec
Q 006256 529 GASSVLSN-----G---TVCSRVGTACVAMVAYGFHIP-VLVCC 563 (653)
Q Consensus 529 GAdaIlaN-----G---~V~NKiGT~~lAl~Ak~~~VP-VyV~a 563 (653)
-|-....+ - --.|-.||..+.-+|+.+++. -+|.+
T Consensus 80 ~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~ 123 (347)
T 1orr_A 80 LAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYS 123 (347)
T ss_dssp CCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred CCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEe
Confidence 55322110 0 014667999999999998886 34433
No 318
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=26.64 E-value=29 Score=35.01 Aligned_cols=101 Identities=14% Similarity=0.151 Sum_probs=56.4
Q ss_pred EEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeeccccccccc-ccc-Ccc-cccccCCcccccccCCCcccccCC
Q 006256 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHER-VQL-DSI-CSNELGDPDSISKVPGREDINHLD 601 (653)
Q Consensus 525 ~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~-~~~-ds~-~~nElrdp~ev~~~~g~~~~~~l~ 601 (653)
....|||+|+-+......--...+.-.|+.+|.-++|++.+..=..+ ..+ +.. +-.+.++- .
T Consensus 119 a~~~GAD~ilLi~a~l~~~~l~~l~~~a~~lGl~~lvEv~~~eE~~~A~~l~g~~iIGinnr~l---------------~ 183 (251)
T 1i4n_A 119 ASSVGADAILIIARILTAEQIKEIYEAAEELGMDSLVEVHSREDLEKVFSVIRPKIIGINTRDL---------------D 183 (251)
T ss_dssp HHHTTCSEEEEEGGGSCHHHHHHHHHHHHTTTCEEEEEECSHHHHHHHHTTCCCSEEEEECBCT---------------T
T ss_pred HHHcCCCEEEEecccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCCEEEEeCccc---------------c
Confidence 44579999998888766633344455788899999999876531111 112 211 11111111 0
Q ss_pred CccCCCCcccccccccccCCCCccEEEeCCCCCCCCCHHHHHH
Q 006256 602 GWDKSENLQLLNLIYDATPSDYVSLIITDYGMIPPTSVPVIVR 644 (653)
Q Consensus 602 ~~~~~~~l~v~Np~FDvTPpeLIt~IITE~Gvi~PssV~~ilr 644 (653)
++ ..+++...-....+|.+. .+|+|-|+.+|..+..+.+
T Consensus 184 t~--~~d~~~~~~l~~~ip~~~--~vIaEsGI~t~edv~~~~~ 222 (251)
T 1i4n_A 184 TF--EIKKNVLWELLPLVPDDT--VVVAESGIKDPRELKDLRG 222 (251)
T ss_dssp TC--CBCTTHHHHHGGGSCTTS--EEEEESCCCCGGGHHHHTT
T ss_pred cC--CCCHHHHHHHHHhCCCCC--EEEEeCCCCCHHHHHHHHH
Confidence 00 011111112233456653 5899999999998877654
No 319
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=26.61 E-value=55 Score=34.82 Aligned_cols=77 Identities=21% Similarity=0.261 Sum_probs=50.8
Q ss_pred hccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcc
Q 006256 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (653)
Q Consensus 451 ~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGA 530 (653)
.|..|.+||..|.+..-.++++.|.+.| ++|++++..|..-+..++ +.-+...|....++..+..++|.|+.|-
T Consensus 31 ~~~~~~~IlIlG~G~lg~~~~~aa~~lG--~~v~v~d~~~~~p~~~~a----d~~~~~~~~d~~~l~~~a~~~D~V~~~~ 104 (419)
T 4e4t_A 31 PILPGAWLGMVGGGQLGRMFCFAAQSMG--YRVAVLDPDPASPAGAVA----DRHLRAAYDDEAALAELAGLCEAVSTEF 104 (419)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCTTCHHHHHS----SEEECCCTTCHHHHHHHHHHCSEEEECC
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEECCCCcCchhhhC----CEEEECCcCCHHHHHHHHhcCCEEEEcc
Confidence 4778999999999987667788887765 467888877776555543 2111111111234555567899999887
Q ss_pred eeE
Q 006256 531 SSV 533 (653)
Q Consensus 531 daI 533 (653)
+.+
T Consensus 105 e~~ 107 (419)
T 4e4t_A 105 ENV 107 (419)
T ss_dssp TTC
T ss_pred CcC
Confidence 655
No 320
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=26.60 E-value=3e+02 Score=27.87 Aligned_cols=100 Identities=15% Similarity=0.116 Sum_probs=50.0
Q ss_pred CCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc-------hHHHHhh----hc
Q 006256 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-------AISYIIH----EV 523 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds-------Av~~iM~----~V 523 (653)
..+++|.|.+.++..++..+.+.| -+|++.+ |.+.+... .+...|+.+..+... .+..+-. ++
T Consensus 102 ~~v~~t~g~~~al~~~~~~l~~~g--d~Vl~~~--~~~~~~~~--~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~ 175 (406)
T 1xi9_A 102 DDVRVTAAVTEALQLIFGALLDPG--DEILVPG--PSYPPYTG--LVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITDRT 175 (406)
T ss_dssp GGEEEESHHHHHHHHHHHHHCCTT--CEEEEEE--SCCHHHHH--HHHHTTCEEEEEEEEGGGTSEECHHHHHHHCCTTE
T ss_pred HHEEEcCChHHHHHHHHHHhCCCC--CEEEEcC--CCCccHHH--HHHHcCCEEEEeecCCCcCCcCCHHHHHHhhCcCc
Confidence 467777777777766666554333 3555543 45555433 334568777666421 1222222 22
Q ss_pred cEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 524 d~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
..|++- .---..|.++..-=-..++-+|+.|++.+++
T Consensus 176 ~~v~i~-~p~nptG~~~~~~~l~~i~~~a~~~~~~li~ 212 (406)
T 1xi9_A 176 KAIAVI-NPNNPTGALYDKKTLEEILNIAGEYEIPVIS 212 (406)
T ss_dssp EEEEEE-SSCTTTCCCCCHHHHHHHHHHHHHHTCCEEE
T ss_pred eEEEEE-CCCCCCCCCcCHHHHHHHHHHHHHcCCEEEE
Confidence 333331 1111223332222234566678889987765
No 321
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=26.46 E-value=2.7e+02 Score=28.53 Aligned_cols=99 Identities=12% Similarity=0.077 Sum_probs=53.3
Q ss_pred ccCCCEEEEeCChHHHH--HHHHHHHH--cC--------CeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc------
Q 006256 452 IRDGDVLLTYGSSSAVE--MILQHAHE--LG--------KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI------ 513 (653)
Q Consensus 452 I~dGdvILT~g~Ss~Ve--~vL~~A~e--~g--------k~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D------ 513 (653)
+....+++|-|.+.++. .++..... .| ..-+|+|.+ |.+.+.. ..+...|..+..+..
T Consensus 93 ~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~--p~y~~~~--~~~~~~g~~~~~v~~~~~g~d 168 (427)
T 3ppl_A 93 VPVEQVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPV--PGYDRHF--SITERFGFEMISVPMNEDGPD 168 (427)
T ss_dssp SCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEE--SCCHHHH--HHHHHTTCEEEEEEEETTEEC
T ss_pred CCcceEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcC--CCcHHHH--HHHHHcCCEEEEeCCCCCCCC
Confidence 34457888888887773 44444443 21 134566543 6665543 344557888777642
Q ss_pred -chHHHHhh--hccEEEEcceeEecCCCeecccchH-------HHHHHH-hhCCCCeee
Q 006256 514 -NAISYIIH--EVTRVFLGASSVLSNGTVCSRVGTA-------CVAMVA-YGFHIPVLV 561 (653)
Q Consensus 514 -sAv~~iM~--~Vd~VllGAdaIlaNG~V~NKiGT~-------~lAl~A-k~~~VPVyV 561 (653)
..+-..+. ++. .|+-+...-|..|+. .++-+| +.|++.|++
T Consensus 169 ~~~l~~~l~~~~~~-------~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~ 220 (427)
T 3ppl_A 169 MDAVEELVKNPQVK-------GMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVW 220 (427)
T ss_dssp HHHHHHHTTSTTEE-------EEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEE
T ss_pred HHHHHHHHhcCCCe-------EEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEE
Confidence 12333331 222 233344445666653 566667 888876554
No 322
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0
Probab=26.40 E-value=48 Score=32.10 Aligned_cols=26 Identities=12% Similarity=0.105 Sum_probs=20.1
Q ss_pred ecccchHHHHHHHhhCCCCeeeeccc
Q 006256 540 CSRVGTACVAMVAYGFHIPVLVCCEA 565 (653)
Q Consensus 540 ~NKiGT~~lAl~Ak~~~VPVyV~aet 565 (653)
.|-.||..+.-+|+.+++.|+.+...
T Consensus 82 ~n~~~~~~l~~~~~~~~~~~v~~SS~ 107 (287)
T 3sc6_A 82 INAIGARNVAVASQLVGAKLVYISTD 107 (287)
T ss_dssp HHTHHHHHHHHHHHHHTCEEEEEEEG
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEchh
Confidence 46678999999999999986665544
No 323
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=26.29 E-value=3.9e+02 Score=26.48 Aligned_cols=69 Identities=9% Similarity=0.080 Sum_probs=39.6
Q ss_pred cCCeeEEEEe-CCCCCchHHHHHHHHHhCCCCEEEE---ccchHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHH
Q 006256 477 LGKQFRVVIV-DSRPKHEGKLLLRRLVRKGLSCTYT---HINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVA 552 (653)
Q Consensus 477 ~gk~f~ViV~-ESRP~~EG~~La~eL~~~GI~vT~I---~DsAv~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~A 552 (653)
+...+++++. ...+ +-+..++++....=.++++ ...-+..+|..+|.+++.. |+. .+=|
T Consensus 227 ~~~~~~lv~~~g~~~--~~~~~l~~~~~~~~~v~~~g~~g~~~~~~~~~~ad~~v~~S-------------~g~--~lEA 289 (376)
T 1v4v_A 227 AFPHLTFVYPVHLNP--VVREAVFPVLKGVRNFVLLDPLEYGSMAALMRASLLLVTDS-------------GGL--QEEG 289 (376)
T ss_dssp HCTTSEEEEECCSCH--HHHHHHHHHHTTCTTEEEECCCCHHHHHHHHHTEEEEEESC-------------HHH--HHHH
T ss_pred hCCCeEEEEECCCCH--HHHHHHHHHhccCCCEEEECCCCHHHHHHHHHhCcEEEECC-------------cCH--HHHH
Confidence 3445676665 2222 1123334443321256666 3336778889999887542 333 4467
Q ss_pred hhCCCCeeee
Q 006256 553 YGFHIPVLVC 562 (653)
Q Consensus 553 k~~~VPVyV~ 562 (653)
-.+|+|++++
T Consensus 290 ~a~G~PvI~~ 299 (376)
T 1v4v_A 290 AALGVPVVVL 299 (376)
T ss_dssp HHTTCCEEEC
T ss_pred HHcCCCEEec
Confidence 7899999975
No 324
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=26.27 E-value=1.7e+02 Score=24.57 Aligned_cols=80 Identities=21% Similarity=0.384 Sum_probs=45.0
Q ss_pred CeeEEEEeCCCCCchHHHHHHHHHhCCCCE--EEEccchHH-HHhh--hccEEEEcceeEecCCCeecccchHHHHHHHh
Q 006256 479 KQFRVVIVDSRPKHEGKLLLRRLVRKGLSC--TYTHINAIS-YIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAY 553 (653)
Q Consensus 479 k~f~ViV~ESRP~~EG~~La~eL~~~GI~v--T~I~DsAv~-~iM~--~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak 553 (653)
...+|+|+|..+.. ...+...|.+.|..+ ....+..-+ ..+. ..|.||+..+- .+ .-|.-.+..+-+
T Consensus 4 ~~~~ILivdd~~~~-~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~D~~l--~~-----~~g~~~~~~lr~ 75 (144)
T 3kht_A 4 RSKRVLVVEDNPDD-IALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIGL--PI-----ANGFEVMSAVRK 75 (144)
T ss_dssp -CEEEEEECCCHHH-HHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTTC--GG-----GCHHHHHHHHHS
T ss_pred CCCEEEEEeCCHHH-HHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcCCCCEEEEeCCC--CC-----CCHHHHHHHHHh
Confidence 35688888876643 233456778888874 333332221 2222 47888886542 22 224444444443
Q ss_pred ---hCCCCeeeecccc
Q 006256 554 ---GFHIPVLVCCEAY 566 (653)
Q Consensus 554 ---~~~VPVyV~aety 566 (653)
..++|+++++...
T Consensus 76 ~~~~~~~pii~~s~~~ 91 (144)
T 3kht_A 76 PGANQHTPIVILTDNV 91 (144)
T ss_dssp SSTTTTCCEEEEETTC
T ss_pred cccccCCCEEEEeCCC
Confidence 3579999998643
No 325
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=26.22 E-value=3.2e+02 Score=29.13 Aligned_cols=103 Identities=13% Similarity=0.099 Sum_probs=51.3
Q ss_pred cCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc-c---------chHHHHhhh
Q 006256 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-I---------NAISYIIHE 522 (653)
Q Consensus 453 ~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~-D---------sAv~~iM~~ 522 (653)
...++++|-|.+.++..++.... .+..-.|+|.+ |.+.+..- .+...|..+..+. | ..+-..+.+
T Consensus 156 ~~~~i~~t~G~~~al~~~~~~l~-~~~gd~Vlv~~--p~y~~~~~--~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~ 230 (500)
T 3tcm_A 156 NADDIFLTDGASPGVHLMMQLLI-RNEKDGILVPI--PQYPLYSA--SIALHGGALVPYYLNESTGWGLETSDVKKQLED 230 (500)
T ss_dssp CGGGEEEESSSHHHHHHHHHHHC-CSTTEEEEEEE--SCCTHHHH--HHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHH
T ss_pred CcccEEEcCCHHHHHHHHHHHHc-CCCCCEEEEeC--CCcHhHHH--HHHHcCCEEEEEecccccCCCCCHHHHHHHHHH
Confidence 34578888888888866555442 12233555543 55544332 3344577766553 2 122233332
Q ss_pred -------ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 523 -------VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 523 -------Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
+..|++- .-=-..|.+++.---..|+-+|+.|++.+++
T Consensus 231 ~~~~~~~~k~ivl~-~p~NPtG~~~s~~~l~~i~~la~~~~~~li~ 275 (500)
T 3tcm_A 231 ARSRGINVRALVVI-NPGNPTGQVLAEENQYDIVKFCKNEGLVLLA 275 (500)
T ss_dssp HHHTTCEEEEEEEE-SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHhcCCCceEEEEE-CCCCCCcccCCHHHHHHHHHHHHHcCCEEEE
Confidence 2233221 1111224444433344566678888887665
No 326
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=26.18 E-value=2.6e+02 Score=23.02 Aligned_cols=77 Identities=16% Similarity=0.179 Sum_probs=42.9
Q ss_pred eEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccch--HHHHhh-hccEEEEcceeEecCCCeecccchHHHHHHHhh-CC
Q 006256 481 FRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA--ISYIIH-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG-FH 556 (653)
Q Consensus 481 f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsA--v~~iM~-~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~-~~ 556 (653)
.+|+|+|..+.. ...+...|...|+.|....+.. +..+-. ..|.||+..+ +.+. -|.-.+..+.+. ..
T Consensus 4 ~~ilivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvl~D~~--l~~~-----~g~~~~~~l~~~~~~ 75 (136)
T 1mvo_A 4 KKILVVDDEESI-VTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVM--LPKL-----DGIEVCKQLRQQKLM 75 (136)
T ss_dssp CEEEEECSCHHH-HHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESS--CSSS-----CHHHHHHHHHHTTCC
T ss_pred CEEEEEECCHHH-HHHHHHHHHHCCcEEEEecCHHHHHHHHhhcCCCEEEEecC--CCCC-----CHHHHHHHHHcCCCC
Confidence 367777766543 2234456777788776555432 222222 4788888654 2222 243344444333 57
Q ss_pred CCeeeeccc
Q 006256 557 IPVLVCCEA 565 (653)
Q Consensus 557 VPVyV~aet 565 (653)
+|+++++..
T Consensus 76 ~~ii~~s~~ 84 (136)
T 1mvo_A 76 FPILMLTAK 84 (136)
T ss_dssp CCEEEEECT
T ss_pred CCEEEEECC
Confidence 899988764
No 327
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=26.09 E-value=3.7e+02 Score=26.34 Aligned_cols=66 Identities=11% Similarity=0.079 Sum_probs=40.7
Q ss_pred eeEE-EEeCCCCCchHHHHHHHHHhCCC-CEEEEcc-chHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCC
Q 006256 480 QFRV-VIVDSRPKHEGKLLLRRLVRKGL-SCTYTHI-NAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFH 556 (653)
Q Consensus 480 ~f~V-iV~ESRP~~EG~~La~eL~~~GI-~vT~I~D-sAv~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~ 556 (653)
.+++ +++-..+. .++-..+.+.|+ .|++.-- .-+..+|..+|.+++-. | ....+=|-.+|
T Consensus 212 ~~~~l~i~G~~~~---~~l~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~~s------g--------~~~~~EAma~G 274 (364)
T 1f0k_A 212 SVTIWHQSGKGSQ---QSVEQAYAEAGQPQHKVTEFIDDMAAAYAWADVVVCRS------G--------ALTVSEIAAAG 274 (364)
T ss_dssp GEEEEEECCTTCH---HHHHHHHHHTTCTTSEEESCCSCHHHHHHHCSEEEECC------C--------HHHHHHHHHHT
T ss_pred CcEEEEEcCCchH---HHHHHHHhhcCCCceEEecchhhHHHHHHhCCEEEECC------c--------hHHHHHHHHhC
Confidence 5674 44444442 334444555565 4665532 46778889999988753 2 34445667789
Q ss_pred CCeeee
Q 006256 557 IPVLVC 562 (653)
Q Consensus 557 VPVyV~ 562 (653)
+||++.
T Consensus 275 ~Pvi~~ 280 (364)
T 1f0k_A 275 LPALFV 280 (364)
T ss_dssp CCEEEC
T ss_pred CCEEEe
Confidence 999986
No 328
>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A
Probab=25.98 E-value=2.5e+02 Score=28.71 Aligned_cols=100 Identities=5% Similarity=-0.115 Sum_probs=57.5
Q ss_pred CEEEEeC-ChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEE--Ecc-chHHHHhhhccEEEEcce
Q 006256 456 DVLLTYG-SSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTY--THI-NAISYIIHEVTRVFLGAS 531 (653)
Q Consensus 456 dvILT~g-~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~--I~D-sAv~~iM~~Vd~VllGAd 531 (653)
..|+..| .+.+=..++..+.++|.-.+|+++|-.+. +| .+.+|.+...+..+ +.+ ......++.+|.||+-|-
T Consensus 9 mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~-~~--~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag 85 (326)
T 1smk_A 9 FKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA-PG--VTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAG 85 (326)
T ss_dssp EEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSH-HH--HHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCc-Hh--HHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCC
Confidence 4688888 44322222333344565467777776554 44 34566665444333 222 245566889999999876
Q ss_pred eEecCCC------eecccchHHHHHHHhhCCCC
Q 006256 532 SVLSNGT------VCSRVGTACVAMVAYGFHIP 558 (653)
Q Consensus 532 aIlaNG~------V~NKiGT~~lAl~Ak~~~VP 558 (653)
.-...|. -.|--++..++-.++.++..
T Consensus 86 ~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~ 118 (326)
T 1smk_A 86 VPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPR 118 (326)
T ss_dssp CCCCSSCCCSHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 5444442 23446777788777776543
No 329
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=25.97 E-value=2.6e+02 Score=26.09 Aligned_cols=102 Identities=11% Similarity=0.096 Sum_probs=60.8
Q ss_pred CCEEEEeCChH--HHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHh-CCCCEEEEcc-c-----hHHHHhh--hc
Q 006256 455 GDVLLTYGSSS--AVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-KGLSCTYTHI-N-----AISYIIH--EV 523 (653)
Q Consensus 455 GdvILT~g~Ss--~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~-~GI~vT~I~D-s-----Av~~iM~--~V 523 (653)
|.+.|+...+. .+..+.+...+.=..|++|.+++ .++.|.+ .||+|+.+.- . -+...+. +|
T Consensus 12 g~V~lsv~D~dK~~~v~~ak~~~~ll~Gf~l~AT~g--------Ta~~L~e~~Gl~v~~v~k~~eGG~p~I~d~I~~geI 83 (152)
T 1b93_A 12 KHIALVAHDHCKQMLMSWVERHQPLLEQHVLYATGT--------TGNLISRATGMNVNAMLSGPMGGDQQVGALISEGKI 83 (152)
T ss_dssp CEEEEEECGGGHHHHHHHHHHTHHHHTTSEEEEETT--------HHHHHHHHHCCCCEEECCGGGTHHHHHHHHHHTTCC
T ss_pred CEEEEEEehhhHHHHHHHHHHHHHHhCCCEEEEccH--------HHHHHHHHhCceeEEEEecCCCCCchHHHHHHCCCc
Confidence 44555544332 22244444443323688998876 4567777 8999999842 1 2555565 79
Q ss_pred cEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeeccccc
Q 006256 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYK 567 (653)
Q Consensus 524 d~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~aetyK 567 (653)
|+||-=-|-+ |.-....-.+.+=-+|-.||||++---.+-+
T Consensus 84 dlVInt~~pl---~~~~h~~D~~~IrR~A~~~~IP~~T~latA~ 124 (152)
T 1b93_A 84 DVLIFFWDPL---NAVPHDPDVKALLRLATVWNIPVATNVATAD 124 (152)
T ss_dssp CEEEEECCTT---SCCTTHHHHHHHHHHHHHTTCCEESSHHHHH
T ss_pred cEEEEcCCcc---cCCcccccHHHHHHHHHHcCCCEEeCHHHHH
Confidence 9998532200 3222234457777899999999986544433
No 330
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=25.91 E-value=4.9e+02 Score=26.72 Aligned_cols=102 Identities=14% Similarity=0.166 Sum_probs=50.3
Q ss_pred CCEEEEeCChHHHHHHHHHHHH-------cCCeeEEEEeCCCCCchHHHH-HHHH-----HhCCC-----CEEEEccc--
Q 006256 455 GDVLLTYGSSSAVEMILQHAHE-------LGKQFRVVIVDSRPKHEGKLL-LRRL-----VRKGL-----SCTYTHIN-- 514 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~e-------~gk~f~ViV~ESRP~~EG~~L-a~eL-----~~~GI-----~vT~I~Ds-- 514 (653)
..+++|-|.+.+++.+|+.+.. .|+ -+|++.+ |.+-|... +..+ ...|. .+..+.-.
T Consensus 115 ~~v~~~~ggteA~~~al~~~~~~~~~~~~~g~-~~vi~~~--~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~ 191 (420)
T 2pb2_A 115 ERVLFMNSGTEANETAFKLARHYACVRHSPFK-TKIIAFH--NAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPFNDL 191 (420)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHHHHTCTTC-CEEEEET--TCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECTTCH
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHhhhccCCCC-CEEEEEe--CCcCCcCHHHHHhcCCccccccCCCCCCCeEEecCCCH
Confidence 3567777777788777776643 243 3666665 43433321 1112 11221 25555422
Q ss_pred -hHHHHhh-hccEEEEcceeEecCCCe--ecccchHHHHHHHhhCCCCeee
Q 006256 515 -AISYIIH-EVTRVFLGASSVLSNGTV--CSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 515 -Av~~iM~-~Vd~VllGAdaIlaNG~V--~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
.+-..+. ++.+|++ +.+...|++ +..-=--.++-+|++|++.+++
T Consensus 192 ~~le~~i~~~~~~vi~--~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~ 240 (420)
T 2pb2_A 192 HAVKAVMDDHTCAVVV--EPIQGEGGVQAATPEFLKGLRDLCDEHQALLVF 240 (420)
T ss_dssp HHHHHHCCTTEEEEEE--CSEETTTTSEECCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHhccCceEEEE--eCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEE
Confidence 2333332 2333433 334444443 2222224566789999997765
No 331
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=25.90 E-value=1.8e+02 Score=26.14 Aligned_cols=79 Identities=16% Similarity=0.183 Sum_probs=46.3
Q ss_pred eeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHH-Hhh--hccEEEEcceeEecCCCeecccchHHHHHHHh-hC
Q 006256 480 QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISY-IIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAY-GF 555 (653)
Q Consensus 480 ~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~-iM~--~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak-~~ 555 (653)
..+|.|+|..|.. ...+...|...|..|....+..-+. .+. ..|.||+..+ +.++ -|.-.+..+-+ ..
T Consensus 7 ~~~iLivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--lp~~-----~g~~~~~~l~~~~~ 78 (184)
T 3rqi_A 7 DKNFLVIDDNEVF-AGTLARGLERRGYAVRQAHNKDEALKLAGAEKFEFITVXLH--LGND-----SGLSLIAPLCDLQP 78 (184)
T ss_dssp CCEEEEECSCHHH-HHHHHHHHHHTTCEEEEECSHHHHHHHHTTSCCSEEEECSE--ETTE-----ESHHHHHHHHHHCT
T ss_pred CCeEEEEcCCHHH-HHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCCCCEEEEecc--CCCc-----cHHHHHHHHHhcCC
Confidence 4578888877654 2233466777888876555543222 222 4788888543 3332 24444444433 45
Q ss_pred CCCeeeecccc
Q 006256 556 HIPVLVCCEAY 566 (653)
Q Consensus 556 ~VPVyV~aety 566 (653)
++||++++...
T Consensus 79 ~~~ii~lt~~~ 89 (184)
T 3rqi_A 79 DARILVLTGYA 89 (184)
T ss_dssp TCEEEEEESSC
T ss_pred CCCEEEEeCCC
Confidence 79999988754
No 332
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=25.85 E-value=2e+02 Score=29.03 Aligned_cols=100 Identities=14% Similarity=0.119 Sum_probs=50.6
Q ss_pred CCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccch-------HHHHhh----hc
Q 006256 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA-------ISYIIH----EV 523 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsA-------v~~iM~----~V 523 (653)
..+++|.|.+.++..+++...+.| -+|++.+ |.+.+.. ..+...|+.+..+.... +..+-. +.
T Consensus 92 ~~i~~t~g~~~al~~~~~~l~~~g--d~Vlv~~--p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~ 165 (385)
T 1b5p_A 92 EETIVTVGGSQALFNLFQAILDPG--DEVIVLS--PYWVSYP--EMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRT 165 (385)
T ss_dssp GGEEEESHHHHHHHHHHHHHCCTT--CEEEEEE--SCCTHHH--HHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCTTE
T ss_pred HHEEEcCChHHHHHHHHHHhcCCC--CEEEEcC--CCchhHH--HHHHHcCCEEEEeecCcccCCCCCHHHHHHhcCCCC
Confidence 467888777778866666554333 3555543 4454433 33445688877775321 122211 22
Q ss_pred cEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 524 d~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
.+|++ ++---..|.++++-=-..++-+|+.|++.|++
T Consensus 166 ~~v~~-~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~ 202 (385)
T 1b5p_A 166 KALVV-NSPNNPTGAVYPKEVLEALARLAVEHDFYLVS 202 (385)
T ss_dssp EEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred EEEEE-eCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEE
Confidence 22322 11111123333322224567788899987665
No 333
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=25.83 E-value=1.1e+02 Score=31.00 Aligned_cols=98 Identities=10% Similarity=0.084 Sum_probs=57.3
Q ss_pred CCEEEEeCCh------HHHHHHHHHHHHcCCeeEEEEeCCCCCchH----HHHHHHHHhCCCCE--------EE----Ec
Q 006256 455 GDVLLTYGSS------SAVEMILQHAHELGKQFRVVIVDSRPKHEG----KLLLRRLVRKGLSC--------TY----TH 512 (653)
Q Consensus 455 GdvILT~g~S------s~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG----~~La~eL~~~GI~v--------T~----I~ 512 (653)
..+|+..|+- ..+...+....+++..++++++-..+..++ ..+.+.+.+.|+.- .. +.
T Consensus 184 ~~~il~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~~ 263 (413)
T 3oy2_A 184 DVLFLNMNRNTARKRLDIYVLAAARFISKYPDAKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVLT 263 (413)
T ss_dssp SEEEECCSCSSGGGTHHHHHHHHHHHHHHCTTCCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCC
T ss_pred ceEEEEcCCCchhcCcHHHHHHHHHHHHhCCCcEEEEEeCCcccchhhHHHHHHHHHHHcCcccccccccceeeccCcCC
Confidence 4467777762 122244444455566677666644443322 33334455578772 22 33
Q ss_pred cchHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeee
Q 006256 513 INAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (653)
Q Consensus 513 DsAv~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~ 562 (653)
+..+..+|..+|.+++-.. . =|.-...+=|-.+|+||++.
T Consensus 264 ~~~~~~~~~~adv~v~pS~--~--------E~~~~~~lEAma~G~PvI~s 303 (413)
T 3oy2_A 264 DERVDMMYNACDVIVNCSS--G--------EGFGLCSAEGAVLGKPLIIS 303 (413)
T ss_dssp HHHHHHHHHHCSEEEECCS--C--------CSSCHHHHHHHTTTCCEEEE
T ss_pred HHHHHHHHHhCCEEEeCCC--c--------CCCCcHHHHHHHcCCCEEEc
Confidence 4578899999999988432 1 12223556678899999973
No 334
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=25.71 E-value=1.4e+02 Score=29.67 Aligned_cols=98 Identities=12% Similarity=0.180 Sum_probs=50.8
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc--------hHHHHhh-hcc
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN--------AISYIIH-EVT 524 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds--------Av~~iM~-~Vd 524 (653)
...+++|-|.+.++..++....+.|. +|++.+ |.+.+.. ..+...|+.+..+... .+-..+. ++.
T Consensus 84 ~~~v~~~~g~t~a~~~~~~~~~~~gd--~vl~~~--~~~~~~~--~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~ 157 (363)
T 3ffh_A 84 EEELIFTAGVDELIELLTRVLLDTTT--NTVMAT--PTFVQYR--QNALIEGAEVREIPLLQDGEHDLEGMLNAIDEKTT 157 (363)
T ss_dssp GGGEEEESSHHHHHHHHHHHHCSTTC--EEEEEE--SSCHHHH--HHHHHHTCEEEEEECCTTSCCCHHHHHHHCCTTEE
T ss_pred hhhEEEeCCHHHHHHHHHHHHccCCC--EEEEcC--CChHHHH--HHHHHcCCEEEEecCCCCCCcCHHHHHHhcccCCC
Confidence 34677777777777666665543343 566654 5565533 3345568888887533 2222222 344
Q ss_pred EEEEcceeEecCCCeecccchHHHHHHHhhC--CCCeee
Q 006256 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGF--HIPVLV 561 (653)
Q Consensus 525 ~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~--~VPVyV 561 (653)
.|++ ...--..|.++.. -.+.-+++.+ ++.+++
T Consensus 158 ~v~~-~~p~nptG~~~~~---~~l~~l~~~~~~~~~li~ 192 (363)
T 3ffh_A 158 IVWI-CNPNNPTGNYIEL---ADIQAFLDRVPSDVLVVL 192 (363)
T ss_dssp EEEE-ESSCTTTCCCCCH---HHHHHHHTTSCTTSEEEE
T ss_pred EEEE-eCCCCCcCCCcCH---HHHHHHHHhCCCCcEEEE
Confidence 5554 2222223433322 2455556665 766654
No 335
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=25.34 E-value=1.6e+02 Score=25.09 Aligned_cols=58 Identities=10% Similarity=0.147 Sum_probs=37.6
Q ss_pred EEEEeCChHHHHHHHHHHH----HcCCeeEEEEeCC-CCCchHHHHHHHHHh----CCCCEEEEccc
Q 006256 457 VLLTYGSSSAVEMILQHAH----ELGKQFRVVIVDS-RPKHEGKLLLRRLVR----KGLSCTYTHIN 514 (653)
Q Consensus 457 vILT~g~Ss~Ve~vL~~A~----e~gk~f~ViV~ES-RP~~EG~~La~eL~~----~GI~vT~I~Ds 514 (653)
.|.+...+......|.... .....+.++++|- -|...|..+++.|.+ .++++.+++..
T Consensus 32 ~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~~pii~~t~~ 98 (152)
T 3heb_A 32 EIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVKENPHTRRSPVVILTTT 98 (152)
T ss_dssp CEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHHHSTTTTTSCEEEEESC
T ss_pred eEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHHhcccccCCCEEEEecC
Confidence 5666666554333343111 1246788888885 488899999999987 35777777654
No 336
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}
Probab=25.12 E-value=71 Score=31.14 Aligned_cols=26 Identities=8% Similarity=0.070 Sum_probs=20.8
Q ss_pred cccchHHHHHHHhhCCCCeeeecccc
Q 006256 541 SRVGTACVAMVAYGFHIPVLVCCEAY 566 (653)
Q Consensus 541 NKiGT~~lAl~Ak~~~VPVyV~aety 566 (653)
|-.||..+.-+|+.+++.-+|.+.+.
T Consensus 95 n~~~~~~ll~a~~~~~v~~~v~~SS~ 120 (321)
T 3vps_A 95 NVDSGRHLLALCTSVGVPKVVVGSTC 120 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEEEG
T ss_pred HHHHHHHHHHHHHHcCCCeEEEecCH
Confidence 67799999999999998777765543
No 337
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=25.09 E-value=2.3e+02 Score=27.89 Aligned_cols=109 Identities=14% Similarity=0.110 Sum_probs=57.8
Q ss_pred CCCEEEEeCChHHHHHHH-HHHHHcCCeeEEEEeCCCCCchHHHHHHHHHh-CCCCEEEEc-c----chHHHHhh--hcc
Q 006256 454 DGDVLLTYGSSSAVEMIL-QHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-KGLSCTYTH-I----NAISYIIH--EVT 524 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL-~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~-~GI~vT~I~-D----sAv~~iM~--~Vd 524 (653)
.+.+||..|-+.-+..-| +.+.++| .+|++++-++.. ...+..++.. .+-.++++. | ..+..++. .+|
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~G--~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAHG--YDVVIADNLVNS-KREAIARIEKITGKTPAFHETDVSDERALARIFDAHPIT 80 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHTT--CEEEEECCCSSS-CTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSCCC
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHCC--CcEEEEecCCcc-hHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccCCc
Confidence 356788888766554433 3444545 567777544332 2223333322 133344442 2 34556666 566
Q ss_pred EEEEcceeEecCC--------CeecccchHHHHHHHhhCCCCeeeeccc
Q 006256 525 RVFLGASSVLSNG--------TVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (653)
Q Consensus 525 ~VllGAdaIlaNG--------~V~NKiGT~~lAl~Ak~~~VPVyV~aet 565 (653)
.||--|-....+. --.|-.||..+.-+|+.+++.-+|...+
T Consensus 81 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS 129 (341)
T 3enk_A 81 AAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKRIVFSSS 129 (341)
T ss_dssp EEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred EEEECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCCCEEEEEec
Confidence 6665442110000 0126678999988999999866665544
No 338
>3d3u_A 4-hydroxybutyrate COA-transferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.80A {Porphyromonas gingivalis}
Probab=25.01 E-value=58 Score=35.18 Aligned_cols=96 Identities=11% Similarity=0.055 Sum_probs=48.0
Q ss_pred HHHHH-HhccCCCEEEEeCChHHHHHHHHHHHHc---CCeeEEEEeC--CCC---------------CchHHHHHHHHHh
Q 006256 445 VKHAV-TKIRDGDVLLTYGSSSAVEMILQHAHEL---GKQFRVVIVD--SRP---------------KHEGKLLLRRLVR 503 (653)
Q Consensus 445 a~~a~-~~I~dGdvILT~g~Ss~Ve~vL~~A~e~---gk~f~ViV~E--SRP---------------~~EG~~La~eL~~ 503 (653)
++.|+ ++|+||++|...++...=+.++....++ -++++|+-.- ..+ ++-|.. .+++.+
T Consensus 14 a~eAv~~~IkdG~tV~~ggf~g~P~~Li~AL~~~~~~~~dLtli~~~~~~~~~~~~~~l~~~i~~~~~~~g~~-~r~~i~ 92 (439)
T 3d3u_A 14 ADEAVVDSLKPGTKVVFGHAAAAPVRFSQAMYRQREKLENITVFHMLYFGDAPHLAPEMRSHVHPTLNFLEGN-SRPASR 92 (439)
T ss_dssp HHHHHHHHCCTTCEEEECCBTTCCHHHHHHHHHTTTTCCSEEEECSCBSSCCTTSSGGGTTTEEEEC-------------
T ss_pred HHHHHHhhCCCcCEEEECcccChHHHHHHHHHHhhCCCCCEEEEEecCCCcchhccHHhCCcEEEEECCCChH-HHHHHH
Confidence 44566 7899999999998752222333333332 2567776431 111 111222 233444
Q ss_pred CC-CCEEEEccchHH-HHhh---hccEEEEcceeEecCCCeec
Q 006256 504 KG-LSCTYTHINAIS-YIIH---EVTRVFLGASSVLSNGTVCS 541 (653)
Q Consensus 504 ~G-I~vT~I~DsAv~-~iM~---~Vd~VllGAdaIlaNG~V~N 541 (653)
.| +..+-+..+.+. |+.. .+|..|+.|...-.+|.+.-
T Consensus 93 ~G~~~~~P~~ls~~~~~l~~~~l~~DVAlI~as~~D~~Gnls~ 135 (439)
T 3d3u_A 93 DRRVDFIPCHFHEVPELFRQGFFPLDVAVVQVSTPNEEGYCSF 135 (439)
T ss_dssp --------CCGGGHHHHHTTSSSCCSEEEEEEECCCTTSEEEC
T ss_pred cCCCeEECCCcchHHHHHHcCCCCCCEEEEEEecCCCCceEEE
Confidence 44 223333334343 4442 58999999999999998755
No 339
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=24.88 E-value=1e+02 Score=30.47 Aligned_cols=78 Identities=15% Similarity=0.141 Sum_probs=52.9
Q ss_pred HHHHhccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH-HHHHhCCC--CEEEEccchHHHHhh--
Q 006256 447 HAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RRLVRKGL--SCTYTHINAISYIIH-- 521 (653)
Q Consensus 447 ~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La-~eL~~~GI--~vT~I~DsAv~~iM~-- 521 (653)
...+++..|++||=.|+++....+. +.+.|..-+|+.+|-.|.. .+.| +.+...|+ .++++.-+....+-+
T Consensus 14 ~i~~~v~~g~~VlDIGtGsG~l~i~--la~~~~~~~V~AvDi~~~a--l~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~ 89 (230)
T 3lec_A 14 KVANYVPKGARLLDVGSDHAYLPIF--LLQMGYCDFAIAGEVVNGP--YQSALKNVSEHGLTSKIDVRLANGLSAFEEAD 89 (230)
T ss_dssp HHHTTSCTTEEEEEETCSTTHHHHH--HHHTTCEEEEEEEESSHHH--HHHHHHHHHHTTCTTTEEEEECSGGGGCCGGG
T ss_pred HHHHhCCCCCEEEEECCchHHHHHH--HHHhCCCCEEEEEECCHHH--HHHHHHHHHHcCCCCcEEEEECchhhcccccc
Confidence 3456888999999999998654432 3345777789999876542 3445 56777887 478877665554444
Q ss_pred hccEEEE
Q 006256 522 EVTRVFL 528 (653)
Q Consensus 522 ~Vd~Vll 528 (653)
.+|.|++
T Consensus 90 ~~D~Ivi 96 (230)
T 3lec_A 90 NIDTITI 96 (230)
T ss_dssp CCCEEEE
T ss_pred ccCEEEE
Confidence 4787764
No 340
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=24.87 E-value=1.6e+02 Score=29.67 Aligned_cols=20 Identities=10% Similarity=0.033 Sum_probs=15.3
Q ss_pred HHHHHHHhhCCCCeeeeccc
Q 006256 546 ACVAMVAYGFHIPVLVCCEA 565 (653)
Q Consensus 546 ~~lAl~Ak~~~VPVyV~aet 565 (653)
+..+++|+..+||++...-.
T Consensus 125 ~~~~~aa~~~giP~v~~~~~ 144 (391)
T 3tsa_A 125 LIGRVLGGLLDLPVVLHRWG 144 (391)
T ss_dssp HHHHHHHHHTTCCEEEECCS
T ss_pred hHHHHHHHHhCCCEEEEecC
Confidence 44667899999999887543
No 341
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=24.62 E-value=1.6e+02 Score=24.39 Aligned_cols=84 Identities=13% Similarity=0.060 Sum_probs=43.5
Q ss_pred eeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccch-HHHHhh--hccEEEEcceeEecCCCeecccchHHHHHHHhh-C
Q 006256 480 QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA-ISYIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG-F 555 (653)
Q Consensus 480 ~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsA-v~~iM~--~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~-~ 555 (653)
..+|+|+|..+.. ...+...|...|+.|....+.. +-..+. ..|.||+..+- ..+..-..-|--.+..+-+. .
T Consensus 3 ~~~ilivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~~--~~~~~~~~~g~~~~~~l~~~~~ 79 (140)
T 2qr3_A 3 LGTIIIVDDNKGV-LTAVQLLLKNHFSKVITLSSPVSLSTVLREENPEVVLLDMNF--TSGINNGNEGLFWLHEIKRQYR 79 (140)
T ss_dssp CCEEEEECSCHHH-HHHHHHHHTTTSSEEEEECCHHHHHHHHHHSCEEEEEEETTT--TC-----CCHHHHHHHHHHHCT
T ss_pred CceEEEEeCCHHH-HHHHHHHHHhCCcEEEEeCCHHHHHHHHHcCCCCEEEEeCCc--CCCCCCCccHHHHHHHHHhhCc
Confidence 4577777776543 2334466777788777554432 222222 47888876542 10000012233333333333 4
Q ss_pred CCCeeeecccc
Q 006256 556 HIPVLVCCEAY 566 (653)
Q Consensus 556 ~VPVyV~aety 566 (653)
++|+++++...
T Consensus 80 ~~~ii~ls~~~ 90 (140)
T 2qr3_A 80 DLPVVLFTAYA 90 (140)
T ss_dssp TCCEEEEEEGG
T ss_pred CCCEEEEECCC
Confidence 79999988643
No 342
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=24.62 E-value=2.6e+02 Score=23.24 Aligned_cols=82 Identities=9% Similarity=-0.038 Sum_probs=48.3
Q ss_pred cCCeeEEEEeCCCCCchHHHHHHHHHhCCC--CEEEEccch--HHHHh------hhccEEEEcceeEecCCCeecccchH
Q 006256 477 LGKQFRVVIVDSRPKHEGKLLLRRLVRKGL--SCTYTHINA--ISYII------HEVTRVFLGASSVLSNGTVCSRVGTA 546 (653)
Q Consensus 477 ~gk~f~ViV~ESRP~~EG~~La~eL~~~GI--~vT~I~DsA--v~~iM------~~Vd~VllGAdaIlaNG~V~NKiGT~ 546 (653)
..+..+|+|+|..+.. ...+...|...|. .|....+.. +..+- ...|.||+..+ +.++ -|--
T Consensus 6 ~~~~~~iLivdd~~~~-~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~--l~~~-----~g~~ 77 (146)
T 3ilh_A 6 TRKIDSVLLIDDDDIV-NFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDIN--MPGI-----NGWE 77 (146)
T ss_dssp -CCEEEEEEECSCHHH-HHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESS--CSSS-----CHHH
T ss_pred cCccceEEEEeCCHHH-HHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCC--CCCC-----CHHH
Confidence 3567889999887654 3334467778887 666555432 22322 23799988654 2322 2434
Q ss_pred HHHHHHh-----hCCCCeeeecccc
Q 006256 547 CVAMVAY-----GFHIPVLVCCEAY 566 (653)
Q Consensus 547 ~lAl~Ak-----~~~VPVyV~aety 566 (653)
.+..+-+ ...+|+++++...
T Consensus 78 ~~~~l~~~~~~~~~~~~ii~~t~~~ 102 (146)
T 3ilh_A 78 LIDLFKQHFQPMKNKSIVCLLSSSL 102 (146)
T ss_dssp HHHHHHHHCGGGTTTCEEEEECSSC
T ss_pred HHHHHHHhhhhccCCCeEEEEeCCC
Confidence 4444444 3579999887654
No 343
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=24.52 E-value=1.9e+02 Score=30.20 Aligned_cols=102 Identities=11% Similarity=0.139 Sum_probs=53.4
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHcC-CeeEEEEeCCCCCchHHHHH--HHHHhCCCCE-----EEEcc--------chHH
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHELG-KQFRVVIVDSRPKHEGKLLL--RRLVRKGLSC-----TYTHI--------NAIS 517 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~g-k~f~ViV~ESRP~~EG~~La--~eL~~~GI~v-----T~I~D--------sAv~ 517 (653)
.+.+++|-|.+..+..++..+.+.+ ++.+|++. .|.+-+.... ..+...|+.+ .++.. ..+-
T Consensus 128 ~~~v~~t~g~t~al~~~~~~~~~~~~~~~~Vl~~--~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~~~~~~~~d~~~l~ 205 (465)
T 3e9k_A 128 EKEIALMNALTVNLHLLMLSFFKPTPKRYKILLE--AKAFPSDHYAIESQLQLHGLNIEESMRMIKPREGEETLRIEDIL 205 (465)
T ss_dssp GGGEEECSCHHHHHHHHHHHHCCCCSSSCEEEEE--TTCCHHHHHHHHHHHHHTTCCHHHHEEEECCCTTCSSCCHHHHH
T ss_pred cCCEEEECCHHHHHHHHHHHhccccCCCCEEEEc--CCcCCchHHHHHHHHHHcCCcceeeeEEEecCCCCCccCHHHHH
Confidence 3467777777777765555553333 23445553 3555554432 3455678764 23321 2344
Q ss_pred HHhh----hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 518 YIIH----EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 518 ~iM~----~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
..+. ++ ++|+-..-=...|.+.. -..|+-+|+.||+.|++
T Consensus 206 ~~i~~~~~~~-~lv~~~~~~n~tG~~~~---l~~i~~la~~~g~~vi~ 249 (465)
T 3e9k_A 206 EVIEKEGDSI-AVILFSGVHFYTGQHFN---IPAITKAGQAKGCYVGF 249 (465)
T ss_dssp HHHHHHGGGE-EEEEEESBCTTTCBBCC---HHHHHHHHHHTTCEEEE
T ss_pred HHHHhcCCCe-EEEEEeCcccCcceeec---HHHHHHHHHHcCCEEEE
Confidence 4443 23 33333332233454443 25677789999988775
No 344
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=24.50 E-value=2.4e+02 Score=28.66 Aligned_cols=100 Identities=10% Similarity=0.052 Sum_probs=54.7
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc---------chHHHHhh-----
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---------NAISYIIH----- 521 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D---------sAv~~iM~----- 521 (653)
.+++|.|.+.++..+++...+.| -+|++.+ |.+.+... .+...|..+..+.. ..+-..+.
T Consensus 104 ~i~~t~g~~~al~~~~~~l~~~g--d~Vl~~~--p~~~~~~~--~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~ 177 (418)
T 3rq1_A 104 RSIATAGGTGGIHHLIHNYTEPG--DEVLTAD--WYWGAYRV--ICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAAK 177 (418)
T ss_dssp EEEEESHHHHHHHHHHHHHSCTT--CEEEEES--SCCTHHHH--HHHHTTCEEEEECSBCTTSSBCHHHHHHHHHHHHHH
T ss_pred cEEECCchHHHHHHHHHHhcCCC--CEEEECC--CCchhHHH--HHHHcCCEEEEEeeeCCCCCcCHHHHHHHHHHhhcc
Confidence 56777777777766665554333 3566654 66655543 34557888877752 12223333
Q ss_pred hccEEEEccee-EecCCCeecccchHHHHHHHh------hCCCCeee
Q 006256 522 EVTRVFLGASS-VLSNGTVCSRVGTACVAMVAY------GFHIPVLV 561 (653)
Q Consensus 522 ~Vd~VllGAda-IlaNG~V~NKiGT~~lAl~Ak------~~~VPVyV 561 (653)
+..++++=..- --..|.++..---..++-+|+ .|++.+++
T Consensus 178 ~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~ 224 (418)
T 3rq1_A 178 QTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGI 224 (418)
T ss_dssp CSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEE
T ss_pred CCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEE
Confidence 23323322111 234576666666566777777 67776554
No 345
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=24.47 E-value=1.5e+02 Score=31.35 Aligned_cols=95 Identities=11% Similarity=-0.003 Sum_probs=51.3
Q ss_pred eCCh-HHHHHHHHHHHHcCCeeEEEEeCCCCCchHHH-HH-------HHHHhCCCCEEEEcc-----c---hHHHHhh-h
Q 006256 461 YGSS-SAVEMILQHAHELGKQFRVVIVDSRPKHEGKL-LL-------RRLVRKGLSCTYTHI-----N---AISYIIH-E 522 (653)
Q Consensus 461 ~g~S-s~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~-La-------~eL~~~GI~vT~I~D-----s---Av~~iM~-~ 522 (653)
++++ .++..+|....+.| -+|++.+ .|.+.+.. +. ..|...|+.+..+.. . .+-..+. +
T Consensus 83 ~~sGt~Ai~~al~all~~G--D~Vl~~~-~~~y~~~~~~~~~~g~~~~~l~~~G~~~~~v~~~~~g~~d~e~l~~ai~~~ 159 (409)
T 3jzl_A 83 IISGTHAISTVLFGILRPD--DELLYIT-GQPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLLENGDVDFPRIAKKMTPK 159 (409)
T ss_dssp SCSHHHHHHHHHHHHCCTT--CEEEECS-SSCCTTHHHHHTSSSSSSSCTGGGTCEEEECCCCTTSCCCHHHHHHHCCTT
T ss_pred CccHHHHHHHHHHHhcCCC--CEEEEeC-CCCcHhHHHHHhcccchhhHHHHcCCEEEEeCCCCCCCcCHHHHHHhccCC
Confidence 3444 45555555443333 3566655 34444443 33 356678998888753 1 2333332 2
Q ss_pred ccEEEEcceeEecCCCeecccchH----HHHHHHhh--CCCCeeee
Q 006256 523 VTRVFLGASSVLSNGTVCSRVGTA----CVAMVAYG--FHIPVLVC 562 (653)
Q Consensus 523 Vd~VllGAdaIlaNG~V~NKiGT~----~lAl~Ak~--~~VPVyV~ 562 (653)
..+|++.. +-|...|..|+. .++-+|+. |+++|+|=
T Consensus 160 tklV~i~~----s~g~p~nptg~v~~l~~I~~la~~~~~~~~livD 201 (409)
T 3jzl_A 160 TKMIGIQR----SRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVD 201 (409)
T ss_dssp EEEEEEEC----SCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred CeEEEEEC----CCCCCCCCcCccccHHHHHHHHHhhCCCCEEEEe
Confidence 33443321 234466777764 46678888 89988763
No 346
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=24.34 E-value=3.6e+02 Score=28.18 Aligned_cols=103 Identities=17% Similarity=0.104 Sum_probs=54.3
Q ss_pred CEEEEeCChHHHHHHHHHHHH-cCCeeEEEEeCCCCCchHHHHH-HHHHh------CCC-----CEEEEccc--------
Q 006256 456 DVLLTYGSSSAVEMILQHAHE-LGKQFRVVIVDSRPKHEGKLLL-RRLVR------KGL-----SCTYTHIN-------- 514 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e-~gk~f~ViV~ESRP~~EG~~La-~eL~~------~GI-----~vT~I~Ds-------- 514 (653)
.+++|-|-+.+++..|+.|.. .|+. .|++.+ +.+.|..+. ..+.. .+. .+..+...
T Consensus 124 ~v~~~~sGseA~~~Alk~a~~~~g~~-~ii~~~--~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (451)
T 3oks_A 124 RSALFNSGSEAVENAVKIARSHTHKP-AVVAFD--HAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEF 200 (451)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHCCC-EEEEET--TCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGG
T ss_pred EEEEeCcHHHHHHHHHHHHHHhcCCC-eEEEEc--CCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCcccccccc
Confidence 577777777788888877764 3443 455443 334444332 22211 111 34454322
Q ss_pred ----------hHHHH---hhh----ccEEEEcceeEecCCCeecccc--hHHHHHHHhhCCCCeee
Q 006256 515 ----------AISYI---IHE----VTRVFLGASSVLSNGTVCSRVG--TACVAMVAYGFHIPVLV 561 (653)
Q Consensus 515 ----------Av~~i---M~~----Vd~VllGAdaIlaNG~V~NKiG--T~~lAl~Ak~~~VPVyV 561 (653)
.+..+ +.+ -+..++=.+-+..+|+++..-- --.|+-+|++|++.+++
T Consensus 201 g~~~~~~~~~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~ 266 (451)
T 3oks_A 201 GKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIA 266 (451)
T ss_dssp CTTTTTCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEE
T ss_pred ccccchhhHHHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEE
Confidence 22222 111 1233333456788877665433 34466789999997764
No 347
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A
Probab=24.31 E-value=1.8e+02 Score=28.44 Aligned_cols=100 Identities=13% Similarity=0.089 Sum_probs=47.6
Q ss_pred CCEEEEeCChHHHHHHH-HHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhh--ccEEEEcce
Q 006256 455 GDVLLTYGSSSAVEMIL-QHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHE--VTRVFLGAS 531 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL-~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~--Vd~VllGAd 531 (653)
+.+||..|-+.-|..-| +.+.++| .+|+++.-++...+ -+.+-+.....+..++.. +|.||--|-
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~----------~~~~Dl~d~~~~~~~~~~~~~d~vih~A~ 69 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQNN--WHAVGCGFRRARPK----------FEQVNLLDSNAVHHIIHDFQPHVIVHCAA 69 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTT--CEEEEEC----------------------------CHHHHHHHCCSEEEECC-
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCC--CeEEEEccCCCCCC----------eEEecCCCHHHHHHHHHhhCCCEEEECCc
Confidence 35688888766554444 3444444 67777753221111 112222222344455554 788776553
Q ss_pred eEecC--------CCeecccchHHHHHHHhhCCCCeeeecccc
Q 006256 532 SVLSN--------GTVCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (653)
Q Consensus 532 aIlaN--------G~V~NKiGT~~lAl~Ak~~~VPVyV~aety 566 (653)
....+ ---+|-.||..+.-+|+.+++.|+.+....
T Consensus 70 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~ 112 (315)
T 2ydy_A 70 ERRPDVVENQPDAASQLNVDASGNLAKEAAAVGAFLIYISSDY 112 (315)
T ss_dssp ------------------CHHHHHHHHHHHHHTCEEEEEEEGG
T ss_pred ccChhhhhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEchHH
Confidence 22111 112477899999999998888766555433
No 348
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=24.25 E-value=1.4e+02 Score=25.64 Aligned_cols=80 Identities=14% Similarity=0.084 Sum_probs=45.7
Q ss_pred CeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHH-HHhh--hccEEEEcceeEecCCCeecccchHHHHHHHhh-
Q 006256 479 KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAIS-YIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG- 554 (653)
Q Consensus 479 k~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~-~iM~--~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~- 554 (653)
...+|+|+|..+.. ...+...|.+.|+.|....+..-+ ..+. ..|+||+..+- .+ .-|.-.+..+-+.
T Consensus 13 ~~~~ILivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l--~~-----~~g~~~~~~l~~~~ 84 (153)
T 3hv2_A 13 RRPEILLVDSQEVI-LQRLQQLLSPLPYTLHFARDATQALQLLASREVDLVISAAHL--PQ-----MDGPTLLARIHQQY 84 (153)
T ss_dssp SCCEEEEECSCHHH-HHHHHHHHTTSSCEEEEESSHHHHHHHHHHSCCSEEEEESCC--SS-----SCHHHHHHHHHHHC
T ss_pred CCceEEEECCCHHH-HHHHHHHhcccCcEEEEECCHHHHHHHHHcCCCCEEEEeCCC--Cc-----CcHHHHHHHHHhHC
Confidence 45678888776643 333446677778777766543222 2222 47888886542 22 2233344434333
Q ss_pred CCCCeeeecccc
Q 006256 555 FHIPVLVCCEAY 566 (653)
Q Consensus 555 ~~VPVyV~aety 566 (653)
.++|+++++...
T Consensus 85 ~~~~ii~~s~~~ 96 (153)
T 3hv2_A 85 PSTTRILLTGDP 96 (153)
T ss_dssp TTSEEEEECCCC
T ss_pred CCCeEEEEECCC
Confidence 479999988643
No 349
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=24.23 E-value=1.2e+02 Score=29.99 Aligned_cols=94 Identities=14% Similarity=0.202 Sum_probs=49.7
Q ss_pred CEEEEeCChHHHHHHHHHH---HHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc--------hHHHHhhhcc
Q 006256 456 DVLLTYGSSSAVEMILQHA---HELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN--------AISYIIHEVT 524 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A---~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds--------Av~~iM~~Vd 524 (653)
.+++|.|.+.++..+++.+ .+.| -+|++. .|.+.+...+ +...|+.+.++... .+-..+.+-.
T Consensus 49 ~v~~~~ggt~al~~~~~~~~~~~~~g--d~Vl~~--~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~ 122 (375)
T 2fnu_A 49 HALVFNSATSALLTLYRNFSEFSADR--NEIITT--PISFVATANM--LLESGYTPVFAGIKNDGNIDELALEKLINERT 122 (375)
T ss_dssp EEEEESCHHHHHHHHHHHSSCCCTTS--CEEEEC--SSSCTHHHHH--HHHTTCEEEECCBCTTSSBCGGGSGGGCCTTE
T ss_pred eEEEeCCHHHHHHHHHHHhcccCCCC--CEEEEC--CCccHhHHHH--HHHCCCEEEEeccCCCCCCCHHHHHhhcCcCc
Confidence 5677766666776666655 3333 356553 4556555443 33478888776422 1111111112
Q ss_pred EEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 525 ~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
++|+-.+. .|.+.. --.++-+|++|++++++
T Consensus 123 ~~v~~~~~---tG~~~~---l~~i~~l~~~~~~~li~ 153 (375)
T 2fnu_A 123 KAIVSVDY---AGKSVE---VESVQKLCKKHSLSFLS 153 (375)
T ss_dssp EEEEEECG---GGCCCC---HHHHHHHHHHHTCEEEE
T ss_pred eEEEEeCC---cCCccC---HHHHHHHHHHcCCEEEE
Confidence 33222222 454433 25677788999988776
No 350
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=24.18 E-value=1.9e+02 Score=29.32 Aligned_cols=89 Identities=13% Similarity=0.092 Sum_probs=51.0
Q ss_pred CEEEEeCChHHHHH-HHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHh-hhccEEEEcceeE
Q 006256 456 DVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYII-HEVTRVFLGASSV 533 (653)
Q Consensus 456 dvILT~g~Ss~Ve~-vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM-~~Vd~VllGAdaI 533 (653)
..|+.+|-+-+=.. +-+.+++ +.++|.+.|.++..+ +..+|.+.||++.+-.+.. .+. ..+|.||++.- |
T Consensus 5 ~~i~~iGiGg~Gms~~A~~L~~--~G~~V~~~D~~~~~~---~~~~L~~~gi~v~~g~~~~--~l~~~~~d~vV~Spg-i 76 (326)
T 3eag_A 5 KHIHIIGIGGTFMGGLAAIAKE--AGFEVSGCDAKMYPP---MSTQLEALGIDVYEGFDAA--QLDEFKADVYVIGNV-A 76 (326)
T ss_dssp CEEEEESCCSHHHHHHHHHHHH--TTCEEEEEESSCCTT---HHHHHHHTTCEEEESCCGG--GGGSCCCSEEEECTT-C
T ss_pred cEEEEEEECHHHHHHHHHHHHh--CCCEEEEEcCCCCcH---HHHHHHhCCCEEECCCCHH--HcCCCCCCEEEECCC-c
Confidence 45777766432211 2223344 346889999987643 4567888999887543321 233 35788876541 2
Q ss_pred ecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 534 LSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 534 laNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
-. ....-..|++.|+||+=
T Consensus 77 ~~---------~~p~~~~a~~~gi~v~~ 95 (326)
T 3eag_A 77 KR---------GMDVVEAILNLGLPYIS 95 (326)
T ss_dssp CT---------TCHHHHHHHHTTCCEEE
T ss_pred CC---------CCHHHHHHHHcCCcEEe
Confidence 11 12344567777888774
No 351
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}
Probab=24.15 E-value=1.1e+02 Score=26.79 Aligned_cols=68 Identities=13% Similarity=0.181 Sum_probs=36.5
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEc
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLG 529 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllG 529 (653)
.|.+|+.+|.+..=..++..+.+.| ++|++.+-.+. ....++.++ |+.+. ....+..++.++|.||.-
T Consensus 20 ~~~~v~iiG~G~iG~~~a~~l~~~g--~~v~v~~r~~~-~~~~~a~~~---~~~~~--~~~~~~~~~~~~Divi~a 87 (144)
T 3oj0_A 20 GGNKILLVGNGMLASEIAPYFSYPQ--YKVTVAGRNID-HVRAFAEKY---EYEYV--LINDIDSLIKNNDVIITA 87 (144)
T ss_dssp CCCEEEEECCSHHHHHHGGGCCTTT--CEEEEEESCHH-HHHHHHHHH---TCEEE--ECSCHHHHHHTCSEEEEC
T ss_pred cCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEcCCHH-HHHHHHHHh---CCceE--eecCHHHHhcCCCEEEEe
Confidence 3889999998765544444444434 45777664432 223344433 44332 223344455677777653
No 352
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=24.10 E-value=2e+02 Score=24.78 Aligned_cols=80 Identities=14% Similarity=0.106 Sum_probs=46.5
Q ss_pred CeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHH-HHhh--hccEEEEcceeEecCCCeecccchHHHHHHHhh-
Q 006256 479 KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAIS-YIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG- 554 (653)
Q Consensus 479 k~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~-~iM~--~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~- 554 (653)
+..+|+|+|..+.. ...+...|.+.|+.|....+..-+ ..+. ..|.||+..+- .++ -|.-.+..+-+.
T Consensus 6 ~~~~ILivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlii~D~~l--~~~-----~g~~~~~~lr~~~ 77 (154)
T 3gt7_A 6 RAGEILIVEDSPTQ-AEHLKHILEETGYQTEHVRNGREAVRFLSLTRPDLIISDVLM--PEM-----DGYALCRWLKGQP 77 (154)
T ss_dssp -CCEEEEECSCHHH-HHHHHHHHHTTTCEEEEESSHHHHHHHHTTCCCSEEEEESCC--SSS-----CHHHHHHHHHHST
T ss_pred CCCcEEEEeCCHHH-HHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCCC--CCC-----CHHHHHHHHHhCC
Confidence 45678888876643 333456777788887666554322 2222 57888886542 222 244444444333
Q ss_pred --CCCCeeeecccc
Q 006256 555 --FHIPVLVCCEAY 566 (653)
Q Consensus 555 --~~VPVyV~aety 566 (653)
.++|+++++...
T Consensus 78 ~~~~~pii~~s~~~ 91 (154)
T 3gt7_A 78 DLRTIPVILLTILS 91 (154)
T ss_dssp TTTTSCEEEEECCC
T ss_pred CcCCCCEEEEECCC
Confidence 479999988643
No 353
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=24.06 E-value=2.2e+02 Score=26.94 Aligned_cols=78 Identities=18% Similarity=0.144 Sum_probs=0.0
Q ss_pred CeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhh---hccEEEEcceeEecCCCeecccchHHHHHHHhhC
Q 006256 479 KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIH---EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGF 555 (653)
Q Consensus 479 k~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~---~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~ 555 (653)
...+|+|+|..|.. ...+...|...|+.|....+..-+.-+- ..|.||+ |.-+.+++ |--.+..+-+.+
T Consensus 22 ~~~~ILivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvll--D~~lp~~~-----g~~~~~~lr~~~ 93 (250)
T 3r0j_A 22 PEARVLVVDDEANI-VELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVIL--DVXMPGMD-----GFGVLRRLRADG 93 (250)
T ss_dssp SSCEEEEECSCHHH-HHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEE--ESCCSSSC-----HHHHHHHHHHTT
T ss_pred CCceEEEEECCHHH-HHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEE--eCCCCCCC-----HHHHHHHHHhcC
Q ss_pred -CCCeeeecc
Q 006256 556 -HIPVLVCCE 564 (653)
Q Consensus 556 -~VPVyV~ae 564 (653)
++|+++++.
T Consensus 94 ~~~~ii~lt~ 103 (250)
T 3r0j_A 94 IDAPALFLTA 103 (250)
T ss_dssp CCCCEEEEEC
T ss_pred CCCCEEEEEC
No 354
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=23.98 E-value=1.2e+02 Score=30.66 Aligned_cols=36 Identities=14% Similarity=0.074 Sum_probs=22.9
Q ss_pred HHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc
Q 006256 469 MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (653)
Q Consensus 469 ~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~ 512 (653)
.+.+.+.++|...+|++.+ .+...+...|+++.-+.
T Consensus 34 ~La~~L~~~GheV~v~~~~--------~~~~~~~~~G~~~~~~~ 69 (398)
T 4fzr_A 34 PLSWALRAAGHEVLVAASE--------NMGPTVTGAGLPFAPTC 69 (398)
T ss_dssp HHHHHHHHTTCEEEEEEEG--------GGHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHCCCEEEEEcCH--------HHHHHHHhCCCeeEecC
Confidence 4455556677766666532 23456777899887775
No 355
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=23.94 E-value=1.7e+02 Score=29.40 Aligned_cols=53 Identities=19% Similarity=0.301 Sum_probs=31.7
Q ss_pred CCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc
Q 006256 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~ 512 (653)
..+++|.|.+.++..+++...+.|+ -+|++. .|.+.+...+ +...|..+..+.
T Consensus 76 ~~v~~~~G~~~ai~~~~~~~~~~g~-d~Vl~~--~p~~~~~~~~--~~~~g~~~~~v~ 128 (356)
T 1fg7_A 76 EQVLVSRGADEGIELLIRAFCEPGK-DAILYC--PPTYGMYSVS--AETIGVECRTVP 128 (356)
T ss_dssp GGEEEESHHHHHHHHHHHHHCCTTT-CEEEEC--SSSCTHHHHH--HHHHTCEEEECC
T ss_pred HHEEEcCCHHHHHHHHHHHHhCCCC-CEEEEe--CCChHHHHHH--HHHcCCEEEEee
Confidence 4577887777777666655543341 356654 4777775544 233577777664
No 356
>3rss_A Putative uncharacterized protein; unknown function, ADP/ATP-dependent NAD(P)H-hydrate dehydrat lyase; HET: NAP; 1.95A {Thermotoga maritima} PDB: 3rrb_A* 2ax3_A* 3rre_A* 3rrj_A* 3rs8_A* 3rs9_A* 3rsf_A* 3rsg_A* 3rrf_A* 3rsq_A* 3rt7_A* 3rt9_A* 3rta_A* 3rtb_A* 3rtc_A* 3rtd_A* 3rte_A* 3rtg_A* 3ru2_A* 3ru3_A*
Probab=23.79 E-value=5.4e+02 Score=28.18 Aligned_cols=113 Identities=12% Similarity=0.103 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhcc--CCCEEEEeCCh-----HHHHHHHHHHHHcCCeeEEEEeCCCCCc-hHHHHHHHHHhCCCCEEEE
Q 006256 440 ADRVIVKHAVTKIR--DGDVLLTYGSS-----SAVEMILQHAHELGKQFRVVIVDSRPKH-EGKLLLRRLVRKGLSCTYT 511 (653)
Q Consensus 440 a~~~Ia~~a~~~I~--dGdvILT~g~S-----s~Ve~vL~~A~e~gk~f~ViV~ESRP~~-EG~~La~eL~~~GI~vT~I 511 (653)
|-..+++...+.+. .+..|+.+|-+ -.+ -+-+++++.|.+.+||++... .. +.+.-...|.+.|+++.
T Consensus 35 Ag~a~a~~i~~~~~~~~~~~v~VlcG~GNNGGDGl-v~AR~L~~~G~~V~v~~~~~~-~~~~~~~~~~~~~~~g~~~~-- 110 (502)
T 3rss_A 35 AGISVVLAMEEELGNLSDYRFLVLCGGGNNGGDGF-VVARNLLGVVKDVLVVFLGKK-KTPDCEYNYGLYKKFGGKVV-- 110 (502)
T ss_dssp HHHHHHHHHHHHHSCCTTCEEEEEECSSHHHHHHH-HHHHHHTTTSSEEEEEECCSS-CCHHHHHHHHHHHHTTCCEE--
T ss_pred HHHHHHHHHHHhcCccCCCEEEEEECCCCCHHHHH-HHHHHHHHCCCeEEEEEECCC-CCHHHHHHHHHHHhCCCcee--
Confidence 44555655555554 35677777642 222 223566667888888877544 33 23333467888999875
Q ss_pred ccchHHHHhhhccEEEEcceeEecCCCeecccchHHHHH-HHhhCCCCee
Q 006256 512 HINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAM-VAYGFHIPVL 560 (653)
Q Consensus 512 ~DsAv~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl-~Ak~~~VPVy 560 (653)
. ......+...|.|| |+|+--|--=.--|-+.-.+ ..+..+.||+
T Consensus 111 ~-~~~~~~~~~~dliV---DalfG~Gl~~~l~~~~~~~i~~iN~~~~~vv 156 (502)
T 3rss_A 111 E-QFEPSILNEFDVVV---DAIFGTGLRGEITGEYAEIINLVNKSGKVVV 156 (502)
T ss_dssp S-CCCGGGGGGCSEEE---EESCSTTCCSCCCHHHHHHHHHHHTTCCEEE
T ss_pred c-ccccccCCCCCEEE---EeCccCCCCCCCcHHHHHHHHHHHcCCCCEE
Confidence 1 11112245677765 77776653212223333222 2344566665
No 357
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=23.77 E-value=1.5e+02 Score=31.99 Aligned_cols=95 Identities=12% Similarity=-0.033 Sum_probs=54.2
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcceeE
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSV 533 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAdaI 533 (653)
.|..||..|.+.+-...++.+.+.|-. |+|++..... . ..+|.+.| .++++...--...+..++.||..
T Consensus 11 ~~~~vlVvGgG~va~~k~~~L~~~ga~--V~vi~~~~~~---~-~~~l~~~~-~i~~~~~~~~~~~l~~~~lVi~a---- 79 (457)
T 1pjq_A 11 RDRDCLIVGGGDVAERKARLLLEAGAR--LTVNALTFIP---Q-FTVWANEG-MLTLVEGPFDETLLDSCWLAIAA---- 79 (457)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBE--EEEEESSCCH---H-HHHHHTTT-SCEEEESSCCGGGGTTCSEEEEC----
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCcCE--EEEEcCCCCH---H-HHHHHhcC-CEEEEECCCCccccCCccEEEEc----
Confidence 478899999998766767777777765 5555543322 2 23444322 24444322111123345555442
Q ss_pred ecCCCe-ecccchHHHHHHHhhCCCCeeeeccc
Q 006256 534 LSNGTV-CSRVGTACVAMVAYGFHIPVLVCCEA 565 (653)
Q Consensus 534 laNG~V-~NKiGT~~lAl~Ak~~~VPVyV~aet 565 (653)
-|+- + ...++..|+.++|||-|+.+.
T Consensus 80 --t~~~~~----n~~i~~~a~~~~i~vn~~d~~ 106 (457)
T 1pjq_A 80 --TDDDTV----NQRVSDAAESRRIFCNVVDAP 106 (457)
T ss_dssp --CSCHHH----HHHHHHHHHHTTCEEEETTCT
T ss_pred --CCCHHH----HHHHHHHHHHcCCEEEECCCc
Confidence 2221 2 346888999999998776654
No 358
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Probab=23.77 E-value=4.4e+02 Score=24.55 Aligned_cols=107 Identities=11% Similarity=0.073 Sum_probs=60.9
Q ss_pred CCCEEEEeCChHHHHHHH-HHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEE-cc----chHHHHhh------
Q 006256 454 DGDVLLTYGSSSAVEMIL-QHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT-HI----NAISYIIH------ 521 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL-~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I-~D----sAv~~iM~------ 521 (653)
.|.+||..|-+.-+..-| +.+.++| .+|++++-++ .....+..+|...|-.+.++ +| ..+..++.
T Consensus 10 ~~~~vlVtGasggiG~~la~~l~~~G--~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 86 (255)
T 1fmc_A 10 DGKCAIITGAGAGIGKEIAITFATAG--ASVVVSDINA-DAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKL 86 (255)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHTTT--CEEEEEESCH-HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCC--CEEEEEcCCH-HHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 467888888877665444 3344444 5777775443 23445567777777677665 33 23444454
Q ss_pred -hccEEEEcceeEecCCCe------------ecccchHHHHHHHh----hCCCCeeeecc
Q 006256 522 -EVTRVFLGASSVLSNGTV------------CSRVGTACVAMVAY----GFHIPVLVCCE 564 (653)
Q Consensus 522 -~Vd~VllGAdaIlaNG~V------------~NKiGT~~lAl~Ak----~~~VPVyV~ae 564 (653)
.+|.||--|-.. ..+.. +|-.|++.+.-.+. ..+...+|...
T Consensus 87 ~~~d~vi~~Ag~~-~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~s 145 (255)
T 1fmc_A 87 GKVDILVNNAGGG-GPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTIT 145 (255)
T ss_dssp SSCCEEEECCCCC-CCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred CCCCEEEECCCCC-CCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEc
Confidence 578877655322 12211 46678877766553 33555555443
No 359
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=23.72 E-value=74 Score=31.44 Aligned_cols=39 Identities=10% Similarity=0.164 Sum_probs=17.7
Q ss_pred HHHHHHHHHhCCCCEEEEccc---hHHHHhhhccEEEEccee
Q 006256 494 GKLLLRRLVRKGLSCTYTHIN---AISYIIHEVTRVFLGASS 532 (653)
Q Consensus 494 G~~La~eL~~~GI~vT~I~Ds---Av~~iM~~Vd~VllGAda 532 (653)
|..+++.|.+.|++|.++... ..-.-+.++|.||.+.|.
T Consensus 24 ~~~v~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~~~~~ 65 (307)
T 3r5x_A 24 GNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 65 (307)
T ss_dssp HHHHHHHSCTTTEEEEEEECSSGGGHHHHTTTCSEEEECCCS
T ss_pred HHHHHHHHHHCCCEEEEEcccCchhHHHhccCCCEEEEeCCC
Confidence 444444455555554444322 111112356777766544
No 360
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=23.70 E-value=2.4e+02 Score=26.04 Aligned_cols=78 Identities=13% Similarity=0.198 Sum_probs=0.0
Q ss_pred CeeEEEEeCCCCCchHHHHHHHHHhCCC-CEEEEccchHHHHhh----------------hccEEEEcceeEecCCCeec
Q 006256 479 KQFRVVIVDSRPKHEGKLLLRRLVRKGL-SCTYTHINAISYIIH----------------EVTRVFLGASSVLSNGTVCS 541 (653)
Q Consensus 479 k~f~ViV~ESRP~~EG~~La~eL~~~GI-~vT~I~DsAv~~iM~----------------~Vd~VllGAdaIlaNG~V~N 541 (653)
...+|+|+|..|.. -..|...|.+.|+ .|....+..-+.-+- ..|+||+ |.-+.+.+
T Consensus 60 ~~~~ILiVdDd~~~-~~~l~~~L~~~g~~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlill--D~~lp~~~--- 133 (206)
T 3mm4_A 60 RGKRVLVVDDNFIS-RKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFM--DCQMPEMD--- 133 (206)
T ss_dssp TTCEEEEECSCHHH-HHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEE--ESCCSSSC---
T ss_pred CCCEEEEEeCCHHH-HHHHHHHHHHcCCCeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEE--cCCCCCCC---
Q ss_pred ccchHHHHHHHhh-----CCCCeeeecc
Q 006256 542 RVGTACVAMVAYG-----FHIPVLVCCE 564 (653)
Q Consensus 542 KiGT~~lAl~Ak~-----~~VPVyV~ae 564 (653)
|.-.+..+-+. .++||++++.
T Consensus 134 --G~el~~~lr~~~~~~~~~~piI~ls~ 159 (206)
T 3mm4_A 134 --GYEATREIRKVEKSYGVRTPIIAVSG 159 (206)
T ss_dssp --HHHHHHHHHHHHHTTTCCCCEEEEES
T ss_pred --HHHHHHHHHhhhhhcCCCCcEEEEEC
No 361
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}
Probab=23.55 E-value=1.3e+02 Score=30.59 Aligned_cols=113 Identities=9% Similarity=0.025 Sum_probs=57.4
Q ss_pred EEEEeCChHHHHHHHHHHHHcCCeeEEE-EeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEccee---
Q 006256 457 VLLTYGSSSAVEMILQHAHELGKQFRVV-IVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASS--- 532 (653)
Q Consensus 457 vILT~g~Ss~Ve~vL~~A~e~gk~f~Vi-V~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAda--- 532 (653)
.|..+|.+......+... ...++|+ |++..+.....+++..+.+.|+.+....|-.-..--.++|.|++..-.
T Consensus 4 rvgiiG~G~~~~~~~~~l---~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~~H 80 (337)
T 3ip3_A 4 KICVIGSSGHFRYALEGL---DEECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLEKEKPDILVINTVFSLN 80 (337)
T ss_dssp EEEEECSSSCHHHHHTTC---CTTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEECSSHHHHHHHHCCSEEEECSSHHHH
T ss_pred EEEEEccchhHHHHHHhc---CCCcEEEEEecCCchhhHHHHHHHHHHcCCCCcccCCHHHHhcCCCCCEEEEeCCcchH
Confidence 456666654332323222 3456655 566666434455566666678766555442222222468888875321
Q ss_pred ------EecCCC--------eecccchHHHHHHHhhCCCCe-eeecccccccccc
Q 006256 533 ------VLSNGT--------VCSRVGTACVAMVAYGFHIPV-LVCCEAYKFHERV 572 (653)
Q Consensus 533 ------IlaNG~--------V~NKiGT~~lAl~Ak~~~VPV-yV~aetyKf~~~~ 572 (653)
.+..|- ..+.--...+.-+|+.+++.+ +.++..+.|++.+
T Consensus 81 ~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~~~v~~~~R~~p~~ 135 (337)
T 3ip3_A 81 GKILLEALERKIHAFVEKPIATTFEDLEKIRSVYQKVRNEVFFTAMFGIRYRPHF 135 (337)
T ss_dssp HHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTTTCCEEECCGGGGSHHH
T ss_pred HHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEecccccCCHHH
Confidence 222331 223334445566777777773 3344456666544
No 362
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*
Probab=23.47 E-value=1.2e+02 Score=29.37 Aligned_cols=98 Identities=12% Similarity=0.104 Sum_probs=56.4
Q ss_pred CCEEEEeCChHHHHHHHHH-HHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEE-cc----chHHHHhhhccEEEE
Q 006256 455 GDVLLTYGSSSAVEMILQH-AHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT-HI----NAISYIIHEVTRVFL 528 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~-A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I-~D----sAv~~iM~~Vd~Vll 528 (653)
+.+||..|-+.-+...|.. +.++ ..+|++++-.+.... +-.++++ .| ..+..++.++|.||-
T Consensus 3 ~k~vlVTGasg~IG~~la~~L~~~--G~~V~~~~r~~~~~~----------~~~~~~~~~Dl~d~~~~~~~~~~~D~vi~ 70 (267)
T 3rft_A 3 MKRLLVTGAAGQLGRVMRERLAPM--AEILRLADLSPLDPA----------GPNEECVQCDLADANAVNAMVAGCDGIVH 70 (267)
T ss_dssp EEEEEEESTTSHHHHHHHHHTGGG--EEEEEEEESSCCCCC----------CTTEEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhc--CCEEEEEecCCcccc----------CCCCEEEEcCCCCHHHHHHHHcCCCEEEE
Confidence 3467777877666544443 3333 467777765543211 2234433 22 345666667777665
Q ss_pred cceeEecCCC-----eecccchHHHHHHHhhCCCCeeeeccc
Q 006256 529 GASSVLSNGT-----VCSRVGTACVAMVAYGFHIPVLVCCEA 565 (653)
Q Consensus 529 GAdaIlaNG~-----V~NKiGT~~lAl~Ak~~~VPVyV~aet 565 (653)
-|-. ..... -+|-.||+.+.-+|+.+++.-+|...+
T Consensus 71 ~Ag~-~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS 111 (267)
T 3rft_A 71 LGGI-SVEKPFEQILQGNIIGLYNLYEAARAHGQPRIVFASS 111 (267)
T ss_dssp CCSC-CSCCCHHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCC-cCcCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 4422 11111 257899999999999999866665443
No 363
>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A
Probab=23.44 E-value=3.6e+02 Score=27.46 Aligned_cols=74 Identities=12% Similarity=0.095 Sum_probs=45.7
Q ss_pred cCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcce
Q 006256 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGAS 531 (653)
Q Consensus 453 ~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAd 531 (653)
.+..+|+.+|.+..-...++.+.+.....+|+|.+-. .....+|+.++...++++. . ++ +..++ ++|.|+.-.-
T Consensus 123 ~~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~-~~~a~~la~~~~~~~~~~~-~-~~-~~e~v-~aDvVi~aTp 196 (322)
T 1omo_A 123 KNSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVR-EKAAKKFVSYCEDRGISAS-V-QP-AEEAS-RCDVLVTTTP 196 (322)
T ss_dssp TTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSS-HHHHHHHHHHHHHTTCCEE-E-CC-HHHHT-SSSEEEECCC
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCC-HHHHHHHHHHHHhcCceEE-E-CC-HHHHh-CCCEEEEeeC
Confidence 3678999999987655555554443334466666543 3345567777776667766 3 33 33445 8999987543
No 364
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=23.40 E-value=2.6e+02 Score=23.28 Aligned_cols=57 Identities=12% Similarity=0.129 Sum_probs=37.7
Q ss_pred EEEEeCChHHHHHHHHHHHHcCCeeEEEEeC-CCCCchHHHHHHHHHh-C--CCCEEEEcc
Q 006256 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVD-SRPKHEGKLLLRRLVR-K--GLSCTYTHI 513 (653)
Q Consensus 457 vILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~E-SRP~~EG~~La~eL~~-~--GI~vT~I~D 513 (653)
+|.+..++......+......+..+.++++| .-|...|..+++.|.+ . .+++.+++.
T Consensus 29 ~v~~~~~~~~al~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~~~ii~lt~ 89 (133)
T 2r25_B 29 NIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDLGYTSPIVALTA 89 (133)
T ss_dssp CEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHHHHHSCCCSCEEEEES
T ss_pred eEEEECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCChHHHHHHHHhhcCCCCCEEEEEC
Confidence 4666666654434455444445568888887 4588899999998875 2 467766654
No 365
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}
Probab=23.30 E-value=3.1e+02 Score=25.56 Aligned_cols=75 Identities=12% Similarity=0.185 Sum_probs=46.8
Q ss_pred CCCEEEEeCChHHHHHHH-HHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEE-cc----chHHHHhh------
Q 006256 454 DGDVLLTYGSSSAVEMIL-QHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT-HI----NAISYIIH------ 521 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL-~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I-~D----sAv~~iM~------ 521 (653)
.|.+||..|-+.-+...| +.+.++| .+|+++..|.......+..+|...|..+.++ .| ..+..++.
T Consensus 4 ~~~~vlItGasggiG~~~a~~l~~~G--~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (247)
T 2hq1_A 4 KGKTAIVTGSSRGLGKAIAWKLGNMG--ANIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNPEDVENMVKTAMDAF 81 (247)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTT--CEEEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCC--CEEEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHhc
Confidence 356788888776654433 3444555 5788886665555566667787778777765 23 23444444
Q ss_pred -hccEEEEcc
Q 006256 522 -EVTRVFLGA 530 (653)
Q Consensus 522 -~Vd~VllGA 530 (653)
.+|.||--|
T Consensus 82 ~~~d~vi~~A 91 (247)
T 2hq1_A 82 GRIDILVNNA 91 (247)
T ss_dssp SCCCEEEECC
T ss_pred CCCCEEEECC
Confidence 577777655
No 366
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=23.30 E-value=4.9e+02 Score=26.62 Aligned_cols=95 Identities=17% Similarity=0.065 Sum_probs=48.6
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc---hHHHHhhh-----ccEEE
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---AISYIIHE-----VTRVF 527 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds---Av~~iM~~-----Vd~Vl 527 (653)
+.|++-+.+.++..+|..+. ++.-.|++. .|.+.+..- -+...|..+..+... .+-.++.+ +.+|+
T Consensus 126 ~~i~~~sGs~a~~~al~~l~--~~gd~vl~~--~~~h~~~~~--~~~~~g~~~~~~~~~d~~~le~~l~~~~~~~~~~v~ 199 (427)
T 2w8t_A 126 GAIVFSTGYMANLGIISTLA--GKGEYVILD--ADSHASIYD--GCQQGNAEIVRFRHNSVEDLDKRLGRLPKEPAKLVV 199 (427)
T ss_dssp EEEEESCHHHHHHHHHHHHS--CTTCEEEEE--TTCCHHHHH--HHHHSCSEEEEECTTCHHHHHHHHHTSCSSSCEEEE
T ss_pred ceEEecCcHHHHHHHHHHhc--CCCCEEEEC--CcccHHHHH--HHHHcCCeeEEeCCCCHHHHHHHHHhccCCCCeEEE
Confidence 44554444456655555443 333345553 344443322 233457777666432 33344443 33444
Q ss_pred EcceeEe-cCCCeecccchHHHHHHHhhCCCCeee
Q 006256 528 LGASSVL-SNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 528 lGAdaIl-aNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
+ +.+. ..|.+.. --.|+-+|+.|++.++|
T Consensus 200 ~--~~~~n~tG~~~~---l~~l~~l~~~~g~~li~ 229 (427)
T 2w8t_A 200 L--EGVYSMLGDIAP---LKEMVAVAKKHGAMVLV 229 (427)
T ss_dssp E--ESEETTTTEECC---HHHHHHHHHHTTCEEEE
T ss_pred E--cCCCCCCCCccC---HHHHHHHHHHcCCEEEE
Confidence 4 3344 3354443 45677789999987765
No 367
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=23.26 E-value=4.2e+02 Score=26.50 Aligned_cols=100 Identities=12% Similarity=0.047 Sum_probs=47.5
Q ss_pred CCEEEEeCChHHHHHHHHHHH--HcCCeeEEEEeCCCCCchHHH-HHHHHHhCCC------------CEEEEc--c-chH
Q 006256 455 GDVLLTYGSSSAVEMILQHAH--ELGKQFRVVIVDSRPKHEGKL-LLRRLVRKGL------------SCTYTH--I-NAI 516 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~--e~gk~f~ViV~ESRP~~EG~~-La~eL~~~GI------------~vT~I~--D-sAv 516 (653)
..+++|.|.+.++..+|+.+. ..| -+|++.+. .+.|.. .+..+ .|. ++..+. | ..+
T Consensus 105 ~~v~~~~gg~~a~~~al~~~~~~~~~--~~vi~~~~--~y~~~~~~~~~~--~g~~~~~~~~~p~~~~~~~~~~~d~~~l 178 (395)
T 1vef_A 105 NRVFPVNSGTEANEAALKFARAHTGR--KKFVAAMR--GFSGRTMGSLSV--TWEPKYREPFLPLVEPVEFIPYNDVEAL 178 (395)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHSC--CEEEEETT--CCCCSSHHHHHT--CCCHHHHGGGCSCSSCEEEECTTCHHHH
T ss_pred CEEEEcCcHHHHHHHHHHHHHHHhCC--CeEEEEcC--CcCCCchhhhhh--cCCcccccccCCCCCCeeEeCCCcHHHH
Confidence 356777777777777666542 333 35676653 222211 11111 122 244443 2 223
Q ss_pred HHHhhhccEEEEcceeEecC-CCeecccc-hHHHHHHHhhCCCCeee
Q 006256 517 SYIIHEVTRVFLGASSVLSN-GTVCSRVG-TACVAMVAYGFHIPVLV 561 (653)
Q Consensus 517 ~~iM~~Vd~VllGAdaIlaN-G~V~NKiG-T~~lAl~Ak~~~VPVyV 561 (653)
-..+.+-.++|+ ...+..+ |.++..-+ --.|+-+|++|++.+++
T Consensus 179 ~~~i~~~~~~v~-~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~ 224 (395)
T 1vef_A 179 KRAVDEETAAVI-LEPVQGEGGVRPATPEFLRAAREITQEKGALLIL 224 (395)
T ss_dssp HHHCCTTEEEEE-ECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHhccCEEEEE-EeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEE
Confidence 333322123433 3334432 44444333 34577789999997765
No 368
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=23.26 E-value=2.9e+02 Score=27.96 Aligned_cols=93 Identities=9% Similarity=0.032 Sum_probs=46.7
Q ss_pred CEEEEeCChHHHHHHHHHH-HHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc------hHHHH---hh-hcc
Q 006256 456 DVLLTYGSSSAVEMILQHA-HELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN------AISYI---IH-EVT 524 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A-~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds------Av~~i---M~-~Vd 524 (653)
+.|+|-+.+.++..+|+.+ .+.| -+|++.+ |.+.+.. ..+...|+.+.++... .+..+ +. ++.
T Consensus 80 ~~v~~~~Gt~a~~~~l~~~~~~~g--d~vl~~~--~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~ 153 (399)
T 2oga_A 80 HAVGVNSGMDALQLALRGLGIGPG--DEVIVPS--HTYIASW--LAVSATGATPVPVEPHEDHPTLDPLLVEKAITPRTR 153 (399)
T ss_dssp EEEEESCHHHHHHHHHHHTTCCTT--CEEEEES--SSCTHHH--HHHHHTTCEEEEECBCSSSSSBCHHHHHHHCCTTEE
T ss_pred eEEEecCHHHHHHHHHHHhCCCCc--CEEEECC--CccHHHH--HHHHHCCCEEEEEecCCCCCCcCHHHHHHhcCCCCe
Confidence 5666655555665555544 2223 3566554 4455532 3445678888877521 12222 22 222
Q ss_pred EEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 525 ~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
.|++ . -..|.+.. --.++-+|+.+++.+++
T Consensus 154 ~v~~--~--n~tG~~~~---l~~i~~l~~~~~~~li~ 183 (399)
T 2oga_A 154 ALLP--V--HLYGHPAD---MDALRELADRHGLHIVE 183 (399)
T ss_dssp EECC--B--CGGGCCCC---HHHHHHHHHHHTCEECE
T ss_pred EEEE--e--CCcCCccC---HHHHHHHHHHcCCEEEE
Confidence 3332 1 12233221 24677788889987765
No 369
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=23.25 E-value=1.9e+02 Score=28.58 Aligned_cols=67 Identities=22% Similarity=0.169 Sum_probs=42.6
Q ss_pred EeCCCCCchHHHHHHHHHhCCCCEEEEccc------hHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCC
Q 006256 485 IVDSRPKHEGKLLLRRLVRKGLSCTYTHIN------AISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIP 558 (653)
Q Consensus 485 V~ESRP~~EG~~La~eL~~~GI~vT~I~Ds------Av~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VP 558 (653)
|+-.....+...+++.|.+.||++.-|+.+ ++..+-+++.-+++||..|+ |..-+-.|...|--
T Consensus 18 Vir~~~~~~a~~~a~al~~gGi~~iEvt~~t~~a~~~I~~l~~~~p~~~IGAGTVl----------t~~~a~~ai~AGA~ 87 (217)
T 3lab_A 18 VIVIDDLVHAIPMAKALVAGGVHLLEVTLRTEAGLAAISAIKKAVPEAIVGAGTVC----------TADDFQKAIDAGAQ 87 (217)
T ss_dssp EECCSCGGGHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHCTTSEEEEECCC----------SHHHHHHHHHHTCS
T ss_pred EEEcCCHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCCeEeecccc----------CHHHHHHHHHcCCC
Confidence 344445578999999999999988777532 33444446666899996554 33344444445555
Q ss_pred eee
Q 006256 559 VLV 561 (653)
Q Consensus 559 VyV 561 (653)
|+|
T Consensus 88 fiv 90 (217)
T 3lab_A 88 FIV 90 (217)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 370
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=23.19 E-value=2.1e+02 Score=23.33 Aligned_cols=76 Identities=16% Similarity=0.307 Sum_probs=44.5
Q ss_pred EEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHH-Hhh--hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCC
Q 006256 482 RVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISY-IIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIP 558 (653)
Q Consensus 482 ~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~-iM~--~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VP 558 (653)
+|.|+|..|.. ...+...|.+.|..|....+..-+. .+. ..|.||+..+ +.++ -|--.+..+-+.+++|
T Consensus 4 ~ilivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlii~D~~--~p~~-----~g~~~~~~lr~~~~~~ 75 (120)
T 3f6p_A 4 KILVVDDEKPI-ADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIM--LPNK-----DGVEVCREVRKKYDMP 75 (120)
T ss_dssp EEEEECSCHHH-HHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCSEEEEETT--STTT-----HHHHHHHHHHTTCCSC
T ss_pred eEEEEECCHHH-HHHHHHHHHhCCEEEEEeCCHHHHHHHHhhCCCCEEEEeCC--CCCC-----CHHHHHHHHHhcCCCC
Confidence 67777766543 2233466777788777655432221 222 4788887543 3332 3545555565667899
Q ss_pred eeeeccc
Q 006256 559 VLVCCEA 565 (653)
Q Consensus 559 VyV~aet 565 (653)
+++++..
T Consensus 76 ii~~t~~ 82 (120)
T 3f6p_A 76 IIMLTAK 82 (120)
T ss_dssp EEEEEES
T ss_pred EEEEECC
Confidence 9998764
No 371
>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D
Probab=23.19 E-value=2.3e+02 Score=27.87 Aligned_cols=53 Identities=28% Similarity=0.372 Sum_probs=33.5
Q ss_pred ccCCCEEEEeCChHHHH-HHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEE
Q 006256 452 IRDGDVLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT 511 (653)
Q Consensus 452 I~dGdvILT~g~Ss~Ve-~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I 511 (653)
+..|++||.+|.+..+. .++..|+..|- +|+++++.+.. .+++ .+.|....+-
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga--~Vi~~~~~~~~--~~~~---~~~ga~~~~~ 176 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAMGL--RVLAAASRPEK--LALP---LALGAEEAAT 176 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTTC--EEEEEESSGGG--SHHH---HHTTCSEEEE
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHH---HhcCCCEEEE
Confidence 77899999999855553 33445555554 78888876532 2333 3457765443
No 372
>2egx_A Putative acetylglutamate kinase; struc genomics, NPPSFA, national project on protein structural AN functional analyses; 1.92A {Thermus thermophilus} PDB: 3u6u_A
Probab=23.17 E-value=5.5e+02 Score=25.28 Aligned_cols=47 Identities=13% Similarity=0.140 Sum_probs=28.8
Q ss_pred HHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeee
Q 006256 516 ISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (653)
Q Consensus 516 v~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~ 562 (653)
+-.++..-..+|+..-++-.+|.+.|--+=...|++|...+--.+++
T Consensus 143 i~~ll~~g~ipVi~~v~~~~~g~~~~~~~D~~Aa~lA~~l~Ad~li~ 189 (269)
T 2egx_A 143 LDLLLQAGYLPVLTPPALSYENEAINTDGDQIAALLATLYGAEALVY 189 (269)
T ss_dssp HHHHHHTTCEEEEECCEEETTSCEEEECHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHCCCEEEEcCcEECCCCCEEEeCHHHHHHHHHHHcCCCEEEE
Confidence 34445555566776555667777765444455667888888764443
No 373
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2
Probab=23.14 E-value=1.6e+02 Score=28.08 Aligned_cols=99 Identities=14% Similarity=0.072 Sum_probs=55.7
Q ss_pred CCCEEEEeCChHHHHHH-HHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEE-cc----chHHHHhh------
Q 006256 454 DGDVLLTYGSSSAVEMI-LQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT-HI----NAISYIIH------ 521 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~v-L~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I-~D----sAv~~iM~------ 521 (653)
.|.+||..|-+.-+..- .+.+.++| .+|+++..+.......+..+|.+.|..+.++ .| ..+..++.
T Consensus 20 ~~k~vlItGasggiG~~la~~l~~~G--~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 97 (274)
T 1ja9_A 20 AGKVALTTGAGRGIGRGIAIELGRRG--ASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHF 97 (274)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC--CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 46788888887666433 34455555 4677765433333445667788778777765 33 24444554
Q ss_pred -hccEEEEcceeEecCCC-------------eecccchHHHHHHHhhC
Q 006256 522 -EVTRVFLGASSVLSNGT-------------VCSRVGTACVAMVAYGF 555 (653)
Q Consensus 522 -~Vd~VllGAdaIlaNG~-------------V~NKiGT~~lAl~Ak~~ 555 (653)
.+|.||--|-. ...+. -+|-.|++.+.-.+..+
T Consensus 98 ~~~d~vi~~Ag~-~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~ 144 (274)
T 1ja9_A 98 GGLDFVMSNSGM-EVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKH 144 (274)
T ss_dssp SCEEEEECCCCC-CCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCC-CCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666554421 11111 13566777776655443
No 374
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=23.07 E-value=59 Score=27.73 Aligned_cols=81 Identities=10% Similarity=0.027 Sum_probs=47.0
Q ss_pred CCeeEEEEeCCCCCchHHHHHHHHHhCC-CCEEEEccch-HH-HHh---hhccEEEEcceeEecCCCeecccchHHHHHH
Q 006256 478 GKQFRVVIVDSRPKHEGKLLLRRLVRKG-LSCTYTHINA-IS-YII---HEVTRVFLGASSVLSNGTVCSRVGTACVAMV 551 (653)
Q Consensus 478 gk~f~ViV~ESRP~~EG~~La~eL~~~G-I~vT~I~DsA-v~-~iM---~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~ 551 (653)
....+|+|+|..+.. ...+...|.+.| +.|....+.. .. .+. ...|+||+..+ +.+ .-|--.+..+
T Consensus 18 ~~~~~ilivdd~~~~-~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~--l~~-----~~g~~~~~~l 89 (146)
T 4dad_A 18 QGMINILVASEDASR-LAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGA--ALD-----TAELAAIEKL 89 (146)
T ss_dssp GGGCEEEEECSCHHH-HHHHHHHHHHHCSCEEEEECCCHHHHTTCHHHHTTCSEEEEECT--TCC-----HHHHHHHHHH
T ss_pred CCCCeEEEEeCCHHH-HHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCCCCEEEEeCC--CCC-----ccHHHHHHHH
Confidence 345788888877654 233446677777 8887766654 22 222 35788888654 222 2233333333
Q ss_pred Hhh-CCCCeeeecccc
Q 006256 552 AYG-FHIPVLVCCEAY 566 (653)
Q Consensus 552 Ak~-~~VPVyV~aety 566 (653)
-+. .++||++++...
T Consensus 90 ~~~~~~~~ii~lt~~~ 105 (146)
T 4dad_A 90 SRLHPGLTCLLVTTDA 105 (146)
T ss_dssp HHHCTTCEEEEEESCC
T ss_pred HHhCCCCcEEEEeCCC
Confidence 333 479999988643
No 375
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}
Probab=23.06 E-value=65 Score=32.54 Aligned_cols=104 Identities=10% Similarity=0.049 Sum_probs=56.0
Q ss_pred CCEEEEeCChHHHHHHHH-HHHHcCCeeEEEEeCCCCCchHHHHHHHHH-hCCCCEEEEc---c-chHHHHhhhccEEEE
Q 006256 455 GDVLLTYGSSSAVEMILQ-HAHELGKQFRVVIVDSRPKHEGKLLLRRLV-RKGLSCTYTH---I-NAISYIIHEVTRVFL 528 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~-~A~e~gk~f~ViV~ESRP~~EG~~La~eL~-~~GI~vT~I~---D-sAv~~iM~~Vd~Vll 528 (653)
+.+||..|-+..|...|. .+.++ ..++|+++.-.+... ..|. ..++.+.... | ..+..++..+|.||-
T Consensus 24 ~~~vlVtGatG~iG~~l~~~L~~~-~g~~V~~~~r~~~~~-----~~~~~~~~v~~~~~Dl~~d~~~~~~~~~~~d~Vih 97 (372)
T 3slg_A 24 AKKVLILGVNGFIGHHLSKRILET-TDWEVFGMDMQTDRL-----GDLVKHERMHFFEGDITINKEWVEYHVKKCDVILP 97 (372)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHH-SSCEEEEEESCCTTT-----GGGGGSTTEEEEECCTTTCHHHHHHHHHHCSEEEE
T ss_pred CCEEEEECCCChHHHHHHHHHHhC-CCCEEEEEeCChhhh-----hhhccCCCeEEEeCccCCCHHHHHHHhccCCEEEE
Confidence 467888887655544333 34444 135777776444211 1111 2344333221 2 245566778888876
Q ss_pred cceeEecCCC--------eecccchHHHHHHHhhCCCCeeeecc
Q 006256 529 GASSVLSNGT--------VCSRVGTACVAMVAYGFHIPVLVCCE 564 (653)
Q Consensus 529 GAdaIlaNG~--------V~NKiGT~~lAl~Ak~~~VPVyV~ae 564 (653)
-|-....... -.|-.||..+.-+|+.++..|+.+..
T Consensus 98 ~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~v~~SS 141 (372)
T 3slg_A 98 LVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPST 141 (372)
T ss_dssp CBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHTCEEEEECC
T ss_pred cCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhCCcEEEeCc
Confidence 4432211110 24678999999999988855544443
No 376
>3s1x_A Probable transaldolase; alpha-beta barrel, conformational selection, domain swapping transferase; HET: I22; 1.65A {Thermoplasma acidophilum} PDB: 3s1u_A* 3s1v_A* 3s0c_A* 3s1w_A*
Probab=22.92 E-value=4.2e+02 Score=26.17 Aligned_cols=50 Identities=20% Similarity=0.227 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHH---HcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchH
Q 006256 464 SSAVEMILQHAH---ELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAI 516 (653)
Q Consensus 464 Ss~Ve~vL~~A~---e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv 516 (653)
+.-.+.++.+|+ +.+.++-|=|.=| .+|.+.+++|.+.||+|.++..-++
T Consensus 63 a~d~e~mi~eA~~L~~~~~nv~IKIP~T---~eGl~A~~~L~~~GI~vn~TlifS~ 115 (223)
T 3s1x_A 63 STKYEGMVEEARKIHGLGDNAVVKIPMT---EDGLRAIKTLSSEHINTNCTLVFNP 115 (223)
T ss_dssp CCSHHHHHHHHHHHHHTCTTEEEEEESS---HHHHHHHHHHHHTTCCEEEEEECSH
T ss_pred cCCHHHHHHHHHHHHHhCCCEEEEeCCC---HHHHHHHHHHHHCCCcEEEEEeCCH
Confidence 344445565554 3456665556555 3899999999999999877765433
No 377
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=22.92 E-value=1.9e+02 Score=29.56 Aligned_cols=73 Identities=21% Similarity=0.300 Sum_probs=42.9
Q ss_pred EEEEeCChHHHHHHHHHHHHcCC-eeEEE-EeCCCCCchHHHHHHHHHhCCCCEEEEcc---------chHHHHhh--hc
Q 006256 457 VLLTYGSSSAVEMILQHAHELGK-QFRVV-IVDSRPKHEGKLLLRRLVRKGLSCTYTHI---------NAISYIIH--EV 523 (653)
Q Consensus 457 vILT~g~Ss~Ve~vL~~A~e~gk-~f~Vi-V~ESRP~~EG~~La~eL~~~GI~vT~I~D---------sAv~~iM~--~V 523 (653)
.||.-|+++.++.+|. +++.|. ..+|. |+-.+|...+ + -.+.|||+.+++. ..+...++ ++
T Consensus 94 ~vl~Sg~g~~l~~ll~-~~~~g~l~~~i~~Visn~~~~~~--~---A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~ 167 (286)
T 3n0v_A 94 VIMVSKADHCLNDLLY-RQRIGQLGMDVVAVVSNHPDLEP--L---AHWHKIPYYHFALDPKDKPGQERKVLQVIEETGA 167 (286)
T ss_dssp EEEESSCCHHHHHHHH-HHHTTSSCCEEEEEEESSSTTHH--H---HHHTTCCEEECCCBTTBHHHHHHHHHHHHHHHTC
T ss_pred EEEEeCCCCCHHHHHH-HHHCCCCCcEEEEEEeCcHHHHH--H---HHHcCCCEEEeCCCcCCHHHHHHHHHHHHHhcCC
Confidence 4677788899976554 455553 34433 3334565432 2 3468999998752 23444554 58
Q ss_pred cEEEEcce-eEec
Q 006256 524 TRVFLGAS-SVLS 535 (653)
Q Consensus 524 d~VllGAd-aIla 535 (653)
|.+++-.- .|+.
T Consensus 168 Dlivla~y~~il~ 180 (286)
T 3n0v_A 168 ELVILARYMQVLS 180 (286)
T ss_dssp SEEEESSCCSCCC
T ss_pred CEEEecccccccC
Confidence 88887443 4443
No 378
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=22.65 E-value=94 Score=29.44 Aligned_cols=82 Identities=11% Similarity=0.194 Sum_probs=43.9
Q ss_pred CCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcceeEecCCCeec----ccchHHHHHHHh
Q 006256 478 GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCS----RVGTACVAMVAY 553 (653)
Q Consensus 478 gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAdaIlaNG~V~N----KiGT~~lAl~Ak 553 (653)
+++.+|.|++- +.+ =..+.+.|.+.|+.++++.+.. -+.++|.+|++=- +..++. ..+...+-.-+.
T Consensus 18 ~~~~~I~ii~~-~~~-~~~~~~~l~~~g~~~~~~~~~~---~l~~~d~iil~GG----~~~~~~~~~~~~~~~~~i~~~~ 88 (208)
T 2iss_D 18 GSHMKIGVLGV-QGD-VREHVEALHKLGVETLIVKLPE---QLDMVDGLILPGG----ESTTMIRILKEMDMDEKLVERI 88 (208)
T ss_dssp --CCEEEEECS-SSC-HHHHHHHHHHTTCEEEEECSGG---GGGGCSEEEECSS----CHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCcEEEEEEC-CCc-hHHHHHHHHHCCCEEEEeCChH---HHhhCCEEEECCC----cHHHHHhhhhhhhHHHHHHHHH
Confidence 34567777764 332 2334577888999998887542 1457888776321 001111 111222222233
Q ss_pred hCCCCeeeecccccc
Q 006256 554 GFHIPVLVCCEAYKF 568 (653)
Q Consensus 554 ~~~VPVyV~aetyKf 568 (653)
..++|++-+|--+-+
T Consensus 89 ~~g~PilGIC~G~Ql 103 (208)
T 2iss_D 89 NNGLPVFATCAGVIL 103 (208)
T ss_dssp HTTCCEEEETHHHHH
T ss_pred HCCCeEEEECHHHHH
Confidence 578999987765443
No 379
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=22.49 E-value=49 Score=30.12 Aligned_cols=78 Identities=17% Similarity=0.195 Sum_probs=45.6
Q ss_pred CeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhh-CCC
Q 006256 479 KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG-FHI 557 (653)
Q Consensus 479 k~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~-~~V 557 (653)
+..+|+|+|..+.. ...+...|...|+.|....+..-+. -...|.||+..+ +.+. + |. .+..+.+. ..+
T Consensus 11 ~~~~iLivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~al-~~~~dlvl~D~~--mp~~---~--g~-l~~~~~~~~~~~ 80 (196)
T 1qo0_D 11 RELQVLVLNPPGEV-SDALVLQLIRIGCSVRQCWPPPEAF-DVPVDVVFTSIF--QNRH---H--DE-IAALLAAGTPRT 80 (196)
T ss_dssp GGCEEEEESCTTHH-HHHHHHHHHHHTCEEEEECSCCSSC-SSCCSEEEEECC--SSTH---H--HH-HHHHHHHSCTTC
T ss_pred cCCeEEEEcCChhH-HHHHHHHHHHcCCeEEEecCchhhC-CCCCCEEEEeCC--CCcc---c--hH-HHHHHhccCCCC
Confidence 45678888877654 2233456667788877666543211 225788887643 2221 1 44 34444444 589
Q ss_pred Ceeeecccc
Q 006256 558 PVLVCCEAY 566 (653)
Q Consensus 558 PVyV~aety 566 (653)
||++++...
T Consensus 81 ~ii~lt~~~ 89 (196)
T 1qo0_D 81 TLVALVEYE 89 (196)
T ss_dssp EEEEEECCC
T ss_pred CEEEEEcCC
Confidence 999987653
No 380
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=22.41 E-value=1.6e+02 Score=32.85 Aligned_cols=66 Identities=27% Similarity=0.261 Sum_probs=47.2
Q ss_pred HHHHHhccCCCEEEEeCChHHHHHHHHHHHH---c----C-C---------------------------eeEEEEeCCCC
Q 006256 446 KHAVTKIRDGDVLLTYGSSSAVEMILQHAHE---L----G-K---------------------------QFRVVIVDSRP 490 (653)
Q Consensus 446 ~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e---~----g-k---------------------------~f~ViV~ESRP 490 (653)
...+.+..+|-++.||+....|...|..|-- . + + .+.|+|+-+-
T Consensus 203 ~~l~~~~~~g~~~~t~~~~~~vr~~L~~aGf~v~~~~~~g~krem~~~~~~~~~~~~~~~~~~~~~~~~~~DVvIIGgG- 281 (676)
T 3ps9_A 203 NAMARLARPGGTLATFTSAGFVRRGLQDAGFTMQKRKGFGRKREMLCGVMEQTLPLPCSAPWFNRTGSSKREAAIIGGG- 281 (676)
T ss_dssp HHHHHHEEEEEEEEESCCCHHHHHHHHHHTCEEEEEECSTTCCEEEEEECCSCCCCCCSCGGGCCCCCSCCEEEEECCS-
T ss_pred HHHHHHhCCCCEEEeccCcHHHHHHHHhCCeEEEeccccccchhhhheeccccccccccCCcccCccCCCCCEEEECCC-
Confidence 3344577889999999999999888877630 0 0 0 1355555543
Q ss_pred CchHHHHHHHHHhCCCCEEEEcc
Q 006256 491 KHEGKLLLRRLVRKGLSCTYTHI 513 (653)
Q Consensus 491 ~~EG~~La~eL~~~GI~vT~I~D 513 (653)
.-|.-.|..|.+.|++|+++--
T Consensus 282 -iaGlsaA~~La~~G~~V~vlEk 303 (676)
T 3ps9_A 282 -IASALLSLALLRRGWQVTLYCA 303 (676)
T ss_dssp -HHHHHHHHHHHTTTCEEEEEES
T ss_pred -HHHHHHHHHHHHCCCeEEEEeC
Confidence 3577888999999999999963
No 381
>2qbu_A Precorrin-2 methyltransferase; HET: SAH; 2.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=22.40 E-value=2.2e+02 Score=27.08 Aligned_cols=49 Identities=14% Similarity=0.154 Sum_probs=34.6
Q ss_pred HHHHHcCCeeEEEEeCCCCCc--hHHHHHHHHHhCCCCEEEEc-cchHHHHhh
Q 006256 472 QHAHELGKQFRVVIVDSRPKH--EGKLLLRRLVRKGLSCTYTH-INAISYIIH 521 (653)
Q Consensus 472 ~~A~e~gk~f~ViV~ESRP~~--EG~~La~eL~~~GI~vT~I~-DsAv~~iM~ 521 (653)
.+..++|++ -|++..+-|.. -|..+++.|.+.||++.+|+ .+++.++..
T Consensus 88 ~~~~~~g~~-V~~l~~GDP~i~~~~~~l~~~~~~~gi~v~viPGiSs~~aa~a 139 (232)
T 2qbu_A 88 AAELEDGRD-VAFITLGDPSIYSTFSYLQQRIEDMGFKTEMVPGVTSFTACAA 139 (232)
T ss_dssp HHHHHTTCC-EEEEESBCTTBSCSHHHHHHHHHHTTCCEEEECCCCHHHHHHH
T ss_pred HHHHHCCCe-EEEEeCCCCccchhHHHHHHHHHHCCCcEEEeCCccHHHHHHH
Confidence 333345665 45666788876 46777888999999999997 566666554
No 382
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=22.40 E-value=93 Score=30.05 Aligned_cols=106 Identities=9% Similarity=-0.019 Sum_probs=54.1
Q ss_pred EEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCC----c-hHHHHHHHHHhCCCCEEEEc----c-chHHHHhhhccEEE
Q 006256 458 LLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPK----H-EGKLLLRRLVRKGLSCTYTH----I-NAISYIIHEVTRVF 527 (653)
Q Consensus 458 ILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~----~-EG~~La~eL~~~GI~vT~I~----D-sAv~~iM~~Vd~Vl 527 (653)
++-.|++.-+...|..-.++-..-+|.++.+.-. . -...+.+.|.+.|+.++.+. + ......+.++|.++
T Consensus 5 l~l~s~~~~~~~~~~~f~~~~~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~ad~I~ 84 (206)
T 3l4e_A 5 LFLTSSFKDVVPLFTEFESNLQGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLRKNDFIY 84 (206)
T ss_dssp EEEESCGGGCHHHHHHHSCCCTTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHHSSEEE
T ss_pred eEEeecccchHHHHHHHHHHcCCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHhCCEEE
Confidence 5556666666565654422112235555543221 1 23455688999999988873 2 22334567888888
Q ss_pred EcceeEecCCCeecccchHHHHHHHhhCCCCeeeec
Q 006256 528 LGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (653)
Q Consensus 528 lGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~a 563 (653)
++==.-+.=...+.+.|-..+=.-+-..|+|++-.|
T Consensus 85 l~GG~~~~l~~~L~~~gl~~~l~~~~~~G~p~~G~s 120 (206)
T 3l4e_A 85 VTGGNTFFLLQELKRTGADKLILEEIAAGKLYIGES 120 (206)
T ss_dssp ECCSCHHHHHHHHHHHTHHHHHHHHHHTTCEEEEET
T ss_pred ECCCCHHHHHHHHHHCChHHHHHHHHHcCCeEEEEC
Confidence 752111100112233343333222233589999544
No 383
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=22.38 E-value=2.3e+02 Score=26.91 Aligned_cols=64 Identities=14% Similarity=0.094 Sum_probs=37.2
Q ss_pred HHhCCCCEEEEc--cchHHHH---hhhccEEEEcceeEecCCCee-cccchHHHHHHHhhCCCCeeeeccccc
Q 006256 501 LVRKGLSCTYTH--INAISYI---IHEVTRVFLGASSVLSNGTVC-SRVGTACVAMVAYGFHIPVLVCCEAYK 567 (653)
Q Consensus 501 L~~~GI~vT~I~--DsAv~~i---M~~Vd~VllGAdaIlaNG~V~-NKiGT~~lAl~Ak~~~VPVyV~aetyK 567 (653)
+...|++++... ......+ -.++|+|++|.+.- ++.+- --.|+..-.++ ++.++||+|+-+.++
T Consensus 83 ~~~~g~~~~~~~~~g~~~~~I~~~~~~~dliV~G~~g~--~~~~~~~~~Gs~~~~v~-~~a~~PVlvv~~~~~ 152 (268)
T 3ab8_A 83 ALAAGVAVEAVLEEGVPHEAILRRARAADLLVLGRSGE--AHGDGFGGLGSTADRVL-RASPVPVLLAPGEPV 152 (268)
T ss_dssp HHHTTCCEEEEEEEECHHHHHHHHHTTCSEEEEESSCT--TSCTTCCSCCHHHHHHH-HHCSSCEEEECSSCC
T ss_pred HHhCCCCeEEEEecCCHHHHHHhhccCCCEEEEeccCC--CccccccccchhHHHHH-HhCCCCEEEECCCCC
Confidence 445677765432 1122222 23799999998852 10221 22576555554 667899999976553
No 384
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=22.33 E-value=1.3e+02 Score=30.53 Aligned_cols=53 Identities=19% Similarity=0.234 Sum_probs=34.5
Q ss_pred hccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEE
Q 006256 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTY 510 (653)
Q Consensus 451 ~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~ 510 (653)
.+..|++||.+|-+.+=...+..|+..|- +||+++..+.. .+++ .+.|.+..+
T Consensus 173 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga--~Vi~~~~~~~~--~~~~---~~lGa~~v~ 225 (348)
T 3two_A 173 KVTKGTKVGVAGFGGLGSMAVKYAVAMGA--EVSVFARNEHK--KQDA---LSMGVKHFY 225 (348)
T ss_dssp TCCTTCEEEEESCSHHHHHHHHHHHHTTC--EEEEECSSSTT--HHHH---HHTTCSEEE
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCC--eEEEEeCCHHH--HHHH---HhcCCCeec
Confidence 46789999999976432334445555554 79998877653 2333 456877666
No 385
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=22.25 E-value=2.1e+02 Score=23.29 Aligned_cols=79 Identities=13% Similarity=0.095 Sum_probs=45.2
Q ss_pred eeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHH-HHhh--hccEEEEcceeEecCCCeecccchHHHHHHHh---
Q 006256 480 QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAIS-YIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAY--- 553 (653)
Q Consensus 480 ~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~-~iM~--~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak--- 553 (653)
+.+|+|+|..+.. ...+...|.+.|..|....+..-+ ..+. ..|.||+..+- .+ .-|--.+..+-+
T Consensus 3 ~~~ilivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~D~~l--~~-----~~g~~~~~~l~~~~~ 74 (127)
T 3i42_A 3 LQQALIVEDYQAA-AETFKELLEMLGFQADYVMSGTDALHAMSTRGYDAVFIDLNL--PD-----TSGLALVKQLRALPM 74 (127)
T ss_dssp CEEEEEECSCHHH-HHHHHHHHHHTTEEEEEESSHHHHHHHHHHSCCSEEEEESBC--SS-----SBHHHHHHHHHHSCC
T ss_pred cceEEEEcCCHHH-HHHHHHHHHHcCCCEEEECCHHHHHHHHHhcCCCEEEEeCCC--CC-----CCHHHHHHHHHhhhc
Confidence 3577788776543 333456677788877766554322 2222 57888887542 22 224334444444
Q ss_pred hCCCCeeeecccc
Q 006256 554 GFHIPVLVCCEAY 566 (653)
Q Consensus 554 ~~~VPVyV~aety 566 (653)
..++|+++++...
T Consensus 75 ~~~~~ii~~s~~~ 87 (127)
T 3i42_A 75 EKTSKFVAVSGFA 87 (127)
T ss_dssp SSCCEEEEEECC-
T ss_pred cCCCCEEEEECCc
Confidence 3579999988643
No 386
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=22.14 E-value=1.4e+02 Score=29.40 Aligned_cols=78 Identities=17% Similarity=0.147 Sum_probs=52.2
Q ss_pred HHHHhccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH-HHHHhCCCC--EEEEccchHHHHhh--
Q 006256 447 HAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RRLVRKGLS--CTYTHINAISYIIH-- 521 (653)
Q Consensus 447 ~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La-~eL~~~GI~--vT~I~DsAv~~iM~-- 521 (653)
...+++..|++||=.|+++-...+. +...+..-+|+-+|-.|. -.++| +.+...|+. ++++.-+....+-.
T Consensus 8 ~l~~~v~~g~~VlDIGtGsG~l~i~--la~~~~~~~V~avDi~~~--al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~ 83 (225)
T 3kr9_A 8 LVASFVSQGAILLDVGSDHAYLPIE--LVERGQIKSAIAGEVVEG--PYQSAVKNVEAHGLKEKIQVRLANGLAAFEETD 83 (225)
T ss_dssp HHHTTSCTTEEEEEETCSTTHHHHH--HHHTTSEEEEEEEESSHH--HHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGG
T ss_pred HHHHhCCCCCEEEEeCCCcHHHHHH--HHHhCCCCEEEEEECCHH--HHHHHHHHHHHcCCCceEEEEECchhhhcccCc
Confidence 3456888999999999998653432 334577778999987654 23455 567778884 77776555433322
Q ss_pred hccEEEE
Q 006256 522 EVTRVFL 528 (653)
Q Consensus 522 ~Vd~Vll 528 (653)
.+|.|++
T Consensus 84 ~~D~Ivi 90 (225)
T 3kr9_A 84 QVSVITI 90 (225)
T ss_dssp CCCEEEE
T ss_pred CCCEEEE
Confidence 4787775
No 387
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=22.02 E-value=2.4e+02 Score=28.69 Aligned_cols=49 Identities=24% Similarity=0.216 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHH-HHhCCCCEEEEccch
Q 006256 466 AVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRR-LVRKGLSCTYTHINA 515 (653)
Q Consensus 466 ~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~e-L~~~GI~vT~I~DsA 515 (653)
++...+.-|.+.+..|.||+. --|..-|-.-+++ |.+.||||.+|.|.-
T Consensus 52 ~~~~~~~~~~~~~pDfvI~is-PN~a~PGP~~ARE~l~~~~iP~IvI~D~p 101 (283)
T 1qv9_A 52 AVEMALDIAEDFEPDFIVYGG-PNPAAPGPSKAREMLADSEYPAVIIGDAP 101 (283)
T ss_dssp HHHHHHHHHHHHCCSEEEEEC-SCTTSHHHHHHHHHHHTSSSCEEEEEEGG
T ss_pred HHHHhhhhhhhcCCCEEEEEC-CCCCCCCchHHHHHHHhCCCCEEEEcCCc
Confidence 343333334455778766654 4466788888865 678999999999964
No 388
>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}
Probab=21.94 E-value=2.6e+02 Score=28.22 Aligned_cols=53 Identities=25% Similarity=0.360 Sum_probs=31.9
Q ss_pred CCCEEEEeCChHHHH-HHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc
Q 006256 454 DGDVLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI 513 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve-~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D 513 (653)
.|++||.+|-+..|. .+++.|...| .+||++++.+. -.+++++ .|.+..+-..
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~G--a~Vi~~~~~~~--~~~~~~~---lGa~~vi~~~ 203 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYG--LRVITTASRNE--TIEWTKK---MGADIVLNHK 203 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT--CEEEEECCSHH--HHHHHHH---HTCSEEECTT
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcC--CEEEEEeCCHH--HHHHHHh---cCCcEEEECC
Confidence 799999996444443 3344455555 48999987653 3444444 4766554433
No 389
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=21.90 E-value=1.8e+02 Score=29.07 Aligned_cols=100 Identities=17% Similarity=0.168 Sum_probs=56.0
Q ss_pred CCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc----------hHHHHhh-hc
Q 006256 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN----------AISYIIH-EV 523 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds----------Av~~iM~-~V 523 (653)
..+++|.|.+.++..++..+.+.| -+|++. .|.+.+.. ..+...|..+..+... .+-..+. ++
T Consensus 82 ~~v~~~~g~~~a~~~~~~~l~~~g--d~Vl~~--~~~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~ 155 (375)
T 3op7_A 82 EQILQTNGATGANLLVLYSLIEPG--DHVISL--YPTYQQLY--DIPKSLGAEVDLWQIEEENGWLPDLEKLRQLIRPTT 155 (375)
T ss_dssp GGEEEESHHHHHHHHHHHHHCCTT--CEEEEE--ESSCTHHH--HHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTC
T ss_pred hhEEEcCChHHHHHHHHHHhcCCC--CEEEEe--CCCchhHH--HHHHHcCCEEEEEeccccCCCCCCHHHHHHhhccCC
Confidence 467777777777766666554333 345553 35555533 3345678877766421 2222222 45
Q ss_pred cEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 524 d~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
..|++- .--...|.++..---..++-+|+.|++.+++
T Consensus 156 ~~v~~~-~~~nptG~~~~~~~l~~i~~la~~~~~~li~ 192 (375)
T 3op7_A 156 KMICIN-NANNPTGAVMDRTYLEELVEIASEVGAYILS 192 (375)
T ss_dssp CEEEEE-SSCTTTCCCCCHHHHHHHHHHHHTTTCEEEE
T ss_pred eEEEEc-CCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 555542 2223445555444456677789999998776
No 390
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=21.87 E-value=4.4e+02 Score=23.72 Aligned_cols=90 Identities=14% Similarity=0.117 Sum_probs=55.2
Q ss_pred HHHHHHhccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc-cc-hHHHHhh-
Q 006256 445 VKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-IN-AISYIIH- 521 (653)
Q Consensus 445 a~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~-Ds-Av~~iM~- 521 (653)
.+.++++|.+...|..+|.++.-. + +..+...|...|++|.++. +. .....+.
T Consensus 29 l~~~~~~i~~a~~I~i~G~G~S~~-~-----------------------a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 84 (187)
T 3sho_A 29 IEAAVEAICRADHVIVVGMGFSAA-V-----------------------AVFLGHGLNSLGIRTTVLTEGGSTLTITLAN 84 (187)
T ss_dssp HHHHHHHHHHCSEEEEECCGGGHH-H-----------------------HHHHHHHHHHTTCCEEEECCCTHHHHHHHHT
T ss_pred HHHHHHHHHhCCEEEEEecCchHH-H-----------------------HHHHHHHHHhcCCCEEEecCCchhHHHHHhc
Confidence 445566666677888888765321 1 1134456667889998888 33 3322333
Q ss_pred --hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeeccc
Q 006256 522 --EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (653)
Q Consensus 522 --~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~aet 565 (653)
+=|.||+ |...|.. .-+..++-.||..|+++++++..
T Consensus 85 ~~~~d~~i~----iS~sG~t---~~~~~~~~~ak~~g~~vi~IT~~ 123 (187)
T 3sho_A 85 LRPTDLMIG----VSVWRYL---RDTVAALAGAAERGVPTMALTDS 123 (187)
T ss_dssp CCTTEEEEE----ECCSSCC---HHHHHHHHHHHHTTCCEEEEESC
T ss_pred CCCCCEEEE----EeCCCCC---HHHHHHHHHHHHCCCCEEEEeCC
Confidence 3354443 3334532 34667778999999999998863
No 391
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=21.84 E-value=1.3e+02 Score=30.78 Aligned_cols=100 Identities=14% Similarity=0.152 Sum_probs=49.7
Q ss_pred CCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccch------HHHHhh----hcc
Q 006256 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA------ISYIIH----EVT 524 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsA------v~~iM~----~Vd 524 (653)
..+++|.|.+.++..+++.+.+.| -+|++.+ |.+.+...+ +...|+.+..+.... +..+-. ++.
T Consensus 103 ~~v~~~~g~t~a~~~~~~~~~~~g--d~Vl~~~--~~~~~~~~~--~~~~g~~~~~v~~~~~~~~~~~~~l~~~l~~~~~ 176 (409)
T 2gb3_A 103 ENVLVTNGGSEAILFSFAVIANPG--DEILVLE--PFYANYNAF--AKIAGVKLIPVTRRMEEGFAIPQNLESFINERTK 176 (409)
T ss_dssp GGEEEESHHHHHHHHHHHHHCCTT--CEEEEEE--SCCTHHHHH--HHHHTCEEEEEECCGGGTSCCCTTGGGGCCTTEE
T ss_pred HHEEEeCCHHHHHHHHHHHhCCCC--CEEEEcC--CCchhHHHH--HHHcCCEEEEeccCCCCCCccHHHHHHhhCcCCe
Confidence 467888777778877666654333 3555543 445454333 344577777764321 111111 222
Q ss_pred EEEEcceeEecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 525 ~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
.|++- .---..|.++..-=-..++-+|++|++.+++
T Consensus 177 ~v~~~-~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 212 (409)
T 2gb3_A 177 GIVLS-NPCNPTGVVYGKDEMRYLVEIAERHGLFLIV 212 (409)
T ss_dssp EEEEE-SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred EEEEC-CCCCCCCCCcCHHHHHHHHHHHHHcCCEEEE
Confidence 33321 1101123332221123566688999998776
No 392
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=21.81 E-value=3.3e+02 Score=22.21 Aligned_cols=52 Identities=19% Similarity=0.178 Sum_probs=30.8
Q ss_pred CeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHH-HHhh--hccEEEEcce
Q 006256 479 KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAIS-YIIH--EVTRVFLGAS 531 (653)
Q Consensus 479 k~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~-~iM~--~Vd~VllGAd 531 (653)
...+|+|+|..+.. ...+...|.+.|..|....+..-+ ..+. ..|.||+..+
T Consensus 5 ~~~~ilivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~ 59 (132)
T 3lte_A 5 QSKRILVVDDDQAM-AAAIERVLKRDHWQVEIAHNGFDAGIKLSTFEPAIMTLDLS 59 (132)
T ss_dssp --CEEEEECSCHHH-HHHHHHHHHHTTCEEEEESSHHHHHHHHHHTCCSEEEEESC
T ss_pred CCccEEEEECCHHH-HHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEEecC
Confidence 34678888876654 333456677788887766554322 2222 5788888654
No 393
>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*
Probab=21.78 E-value=3.4e+02 Score=29.65 Aligned_cols=109 Identities=17% Similarity=0.229 Sum_probs=64.2
Q ss_pred CEEEEeCChHHHHHHH-HHHHHcCCeeEEEEeCCCC-Cch-HHHHHHHHHhCCCCEEEE-cc----chHHHHhhh-----
Q 006256 456 DVLLTYGSSSAVEMIL-QHAHELGKQFRVVIVDSRP-KHE-GKLLLRRLVRKGLSCTYT-HI----NAISYIIHE----- 522 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL-~~A~e~gk~f~ViV~ESRP-~~E-G~~La~eL~~~GI~vT~I-~D----sAv~~iM~~----- 522 (653)
.++|..|-+.-+...| +...++|.. +|+++.-++ ..+ -.++..+|.+.|..++++ +| .++..++.+
T Consensus 240 ~~vLITGgsgGIG~alA~~La~~Ga~-~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~i~~~g 318 (496)
T 3mje_A 240 GSVLVTGGTGGIGGRVARRLAEQGAA-HLVLTSRRGADAPGAAELRAELEQLGVRVTIAACDAADREALAALLAELPEDA 318 (496)
T ss_dssp SEEEEETCSSHHHHHHHHHHHHTTCS-EEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTCCTTS
T ss_pred CEEEEECCCCchHHHHHHHHHHCCCc-EEEEEeCCCCChHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHhC
Confidence 6777777766554433 344455543 444443322 223 356778999999999887 33 346666653
Q ss_pred -ccEEEEcceeEecCCCe-------------ecccchHHHHHHHhhCCCCeeeeccc
Q 006256 523 -VTRVFLGASSVLSNGTV-------------CSRVGTACVAMVAYGFHIPVLVCCEA 565 (653)
Q Consensus 523 -Vd~VllGAdaIlaNG~V-------------~NKiGT~~lAl~Ak~~~VPVyV~aet 565 (653)
+|.||-.|-....++.+ .|-.|++.+.-++..+...++|++.+
T Consensus 319 ~ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~~~~~iV~~SS 375 (496)
T 3mje_A 319 PLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTADLDLDAFVLFSS 375 (496)
T ss_dssp CEEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTSCCSEEEEEEE
T ss_pred CCeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeC
Confidence 56666555332233332 24457777777777777777776554
No 394
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=21.77 E-value=1.3e+02 Score=31.82 Aligned_cols=68 Identities=18% Similarity=0.228 Sum_probs=42.1
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHH-HHhCCC--CEEEEccchHHHHhh-hccEEE
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRR-LVRKGL--SCTYTHINAISYIIH-EVTRVF 527 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~e-L~~~GI--~vT~I~DsAv~~iM~-~Vd~Vl 527 (653)
.|.+||=+|+++-+..++ |++.|.+ +||.+|..|. ...+++ +...|+ .+++|.-.+--.-++ ++|.||
T Consensus 83 ~~k~VLDvG~GtGiLs~~--Aa~aGA~-~V~ave~s~~---~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~Dviv 154 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIF--CAQAGAR-RVYAVEASAI---WQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIV 154 (376)
T ss_dssp TTCEEEEETCTTSHHHHH--HHHTTCS-EEEEEECSTT---HHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEE
T ss_pred CCCEEEEeCCCccHHHHH--HHHhCCC-EEEEEeChHH---HHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEE
Confidence 588999999998554432 3445654 8999998775 355644 345565 478876443222233 566655
No 395
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=21.76 E-value=96 Score=28.12 Aligned_cols=72 Identities=17% Similarity=0.187 Sum_probs=35.0
Q ss_pred cCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH-HHHHhCCCCEEEEccchHHHHh------hhccE
Q 006256 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RRLVRKGLSCTYTHINAISYII------HEVTR 525 (653)
Q Consensus 453 ~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La-~eL~~~GI~vT~I~DsAv~~iM------~~Vd~ 525 (653)
..+.+||=.|+++-. ++..+.+.+...+|+.+|-.|.. ..++ +.+...|+.++++...+...+- ...|.
T Consensus 29 ~~~~~vLDiG~G~G~--~~~~l~~~~~~~~v~~vD~~~~~--~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~ 104 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGC--IAVSIALACPGVSVTAVDLSMDA--LAVARRNAERFGAVVDWAAADGIEWLIERAERGRPWHA 104 (215)
T ss_dssp CTTEEEEEEESSBCH--HHHHHHHHCTTEEEEEEECC---------------------CCHHHHHHHHHHHHHTTCCBSE
T ss_pred CCCCEEEEecCCHhH--HHHHHHHhCCCCeEEEEECCHHH--HHHHHHHHHHhCCceEEEEcchHhhhhhhhhccCcccE
Confidence 568899999987643 12333334556789999987753 2333 3455566677777655555333 34677
Q ss_pred EEE
Q 006256 526 VFL 528 (653)
Q Consensus 526 Vll 528 (653)
|+.
T Consensus 105 i~~ 107 (215)
T 4dzr_A 105 IVS 107 (215)
T ss_dssp EEE
T ss_pred EEE
Confidence 765
No 396
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=21.76 E-value=2.7e+02 Score=23.14 Aligned_cols=80 Identities=15% Similarity=0.238 Sum_probs=46.6
Q ss_pred CeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHH-HHhh--hccEEEEcceeEecCCCeecccchHHHHHHHh--
Q 006256 479 KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAIS-YIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAY-- 553 (653)
Q Consensus 479 k~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~-~iM~--~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak-- 553 (653)
...+|+|+|..+.. ...+...|.+.|+.|....+..-+ ..+. ..|.||+..+ +.+ .-|.-.+..+-+
T Consensus 5 ~~~~iLivdd~~~~-~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~--l~~-----~~g~~~~~~l~~~~ 76 (140)
T 3grc_A 5 PRPRILICEDDPDI-ARLLNLMLEKGGFDSDMVHSAAQALEQVARRPYAAMTVDLN--LPD-----QDGVSLIRALRRDS 76 (140)
T ss_dssp CCSEEEEECSCHHH-HHHHHHHHHHTTCEEEEECSHHHHHHHHHHSCCSEEEECSC--CSS-----SCHHHHHHHHHTSG
T ss_pred CCCCEEEEcCCHHH-HHHHHHHHHHCCCeEEEECCHHHHHHHHHhCCCCEEEEeCC--CCC-----CCHHHHHHHHHhCc
Confidence 34678888876643 233446677788887666554322 2222 5788888654 222 224444444443
Q ss_pred -hCCCCeeeecccc
Q 006256 554 -GFHIPVLVCCEAY 566 (653)
Q Consensus 554 -~~~VPVyV~aety 566 (653)
..++|+++++...
T Consensus 77 ~~~~~~ii~~s~~~ 90 (140)
T 3grc_A 77 RTRDLAIVVVSANA 90 (140)
T ss_dssp GGTTCEEEEECTTH
T ss_pred ccCCCCEEEEecCC
Confidence 3589999988754
No 397
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=21.70 E-value=50 Score=31.18 Aligned_cols=75 Identities=17% Similarity=0.211 Sum_probs=41.8
Q ss_pred EEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcceeEecCCCeecccchHH----HHHHHhhCCC
Q 006256 482 RVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTAC----VAMVAYGFHI 557 (653)
Q Consensus 482 ~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~----lAl~Ak~~~V 557 (653)
+|.|+|---.+- ..+.+.|.+.|++++++.+.. .+..+|.+|| +-|+-....+-.. +.-.+.+.++
T Consensus 4 ~I~iiD~g~~n~-~si~~al~~~G~~~~v~~~~~---~l~~~D~lil------PG~g~~~~~~~~~~~~~~i~~~~~~~~ 73 (211)
T 4gud_A 4 NVVIIDTGCANI-SSVKFAIERLGYAVTISRDPQ---VVLAADKLFL------PGVGTASEAMKNLTERDLIELVKRVEK 73 (211)
T ss_dssp CEEEECCCCTTH-HHHHHHHHHTTCCEEEECCHH---HHHHCSEEEE------CCCSCHHHHHHHHHHTTCHHHHHHCCS
T ss_pred EEEEEECCCChH-HHHHHHHHHCCCEEEEECCHH---HHhCCCEEEE------CCCCCHHHHHHHHHhcChHHHHHHcCC
Confidence 355555322111 346688999999999887643 3567888766 2212111111110 1223556799
Q ss_pred Ceeeecccc
Q 006256 558 PVLVCCEAY 566 (653)
Q Consensus 558 PVyV~aety 566 (653)
||+-+|=-+
T Consensus 74 PvlGIClG~ 82 (211)
T 4gud_A 74 PLLGICLGM 82 (211)
T ss_dssp CEEEETHHH
T ss_pred CEEEEchhH
Confidence 999777433
No 398
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=21.70 E-value=2.8e+02 Score=25.09 Aligned_cols=80 Identities=16% Similarity=0.100 Sum_probs=46.4
Q ss_pred CeeEEEEeCCCCCchHHHHHHHHHhCCCCEE-EEccc--hHHHHhh-hccEEEEcceeEecCCCeecccchHHHHHHHhh
Q 006256 479 KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCT-YTHIN--AISYIIH-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG 554 (653)
Q Consensus 479 k~f~ViV~ESRP~~EG~~La~eL~~~GI~vT-~I~Ds--Av~~iM~-~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~ 554 (653)
...+|+|+|..|.. ...+...|...|+.|. ...+. ++..+-. ..|.||+..+- .+ .-|--.+..+.+.
T Consensus 12 m~~~iLivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~~al~~~~~~~~dlvi~D~~~--p~-----~~g~~~~~~l~~~ 83 (205)
T 1s8n_A 12 VPRRVLIAEDEALI-RMDLAEMLREEGYEIVGEAGDGQEAVELAELHKPDLVIMDVKM--PR-----RDGIDAASEIASK 83 (205)
T ss_dssp CCCEEEEECSSHHH-HHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEESSC--SS-----SCHHHHHHHHHHT
T ss_pred CCccEEEEECCHHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCCEEEEeCCC--CC-----CChHHHHHHHHhc
Confidence 34688888887654 2233466777888877 34332 2222222 57888886432 22 2244445555555
Q ss_pred CCCCeeeecccc
Q 006256 555 FHIPVLVCCEAY 566 (653)
Q Consensus 555 ~~VPVyV~aety 566 (653)
+..||++++...
T Consensus 84 ~~~pii~lt~~~ 95 (205)
T 1s8n_A 84 RIAPIVVLTAFS 95 (205)
T ss_dssp TCSCEEEEEEGG
T ss_pred CCCCEEEEecCC
Confidence 667999987644
No 399
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=21.61 E-value=3.2e+02 Score=21.96 Aligned_cols=76 Identities=20% Similarity=0.225 Sum_probs=41.1
Q ss_pred EEEEeCCCCCchHHHHHHHHHhCCCCEEEEccch--HHHHhh-hccEEEEcceeEecCCCeecccchHHHHHHHhh---C
Q 006256 482 RVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA--ISYIIH-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG---F 555 (653)
Q Consensus 482 ~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsA--v~~iM~-~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~---~ 555 (653)
+|+++|..+.. ...+...|...|+.+....+.. +.++-. ..|.||+..+ +.+. -|.-.+..+-+. .
T Consensus 3 ~ilivdd~~~~-~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~--l~~~-----~g~~~~~~l~~~~~~~ 74 (124)
T 1mb3_A 3 KVLIVEDNELN-MKLFHDLLEAQGYETLQTREGLSALSIARENKPDLILMDIQ--LPEI-----SGLEVTKWLKEDDDLA 74 (124)
T ss_dssp EEEEECSCHHH-HHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEESB--CSSS-----BHHHHHHHHHHSTTTT
T ss_pred EEEEEcCCHHH-HHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCCCCEEEEeCC--CCCC-----CHHHHHHHHHcCcccc
Confidence 57777766543 2334466777788776554432 222222 4788888653 2322 243333444332 3
Q ss_pred CCCeeeeccc
Q 006256 556 HIPVLVCCEA 565 (653)
Q Consensus 556 ~VPVyV~aet 565 (653)
++|+++++..
T Consensus 75 ~~~ii~~s~~ 84 (124)
T 1mb3_A 75 HIPVVAVTAF 84 (124)
T ss_dssp TSCEEEEC--
T ss_pred CCcEEEEECC
Confidence 7899998764
No 400
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=21.61 E-value=88 Score=29.96 Aligned_cols=81 Identities=15% Similarity=0.143 Sum_probs=45.9
Q ss_pred CeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEE-cceeEecCCCeecccchHHHHHHHhhCCC
Q 006256 479 KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFL-GASSVLSNGTVCSRVGTACVAMVAYGFHI 557 (653)
Q Consensus 479 k~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~Vll-GAdaIlaNG~V~NKiGT~~lAl~Ak~~~V 557 (653)
...+|.++|....+ -..+++.|.+.|+.+.++....-.--+.++|.+|| |.. .|+++.......+.-.+...++
T Consensus 12 ~~~~i~~id~~~~~-~~~~~~~l~~~G~~~~vv~~~~~~~~l~~~DglIl~GG~----p~~~~~~~~~~~l~~~~~~~~~ 86 (212)
T 2a9v_A 12 HMLKIYVVDNGGQW-THREWRVLRELGVDTKIVPNDIDSSELDGLDGLVLSGGA----PNIDEELDKLGSVGKYIDDHNY 86 (212)
T ss_dssp CCCBEEEEEESCCT-TCHHHHHHHHTTCBCCEEETTSCGGGGTTCSEEEEEEEC----SCGGGTGGGHHHHHHHHHHCCS
T ss_pred ccceEEEEeCCCcc-HHHHHHHHHHCCCEEEEEeCCCCHHHHhCCCEEEECCCC----CCCCcccccchhHHHHHHhCCC
Confidence 34567777766555 33466788888988888764321112335787777 331 2333332122222233457899
Q ss_pred Ceeeecc
Q 006256 558 PVLVCCE 564 (653)
Q Consensus 558 PVyV~ae 564 (653)
|++-+|-
T Consensus 87 PiLGIC~ 93 (212)
T 2a9v_A 87 PILGICV 93 (212)
T ss_dssp CEEEETH
T ss_pred CEEEECh
Confidence 9997774
No 401
>3r5e_A Transaldolase; pentose phosphate pathway, TIM barrel fold, transferase; 2.10A {Corynebacterium glutamicum}
Probab=21.52 E-value=1.6e+02 Score=31.46 Aligned_cols=66 Identities=18% Similarity=0.152 Sum_probs=40.6
Q ss_pred ccCCCEEEEeC--ChHHHHHHHHHHHH---c--CCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHh
Q 006256 452 IRDGDVLLTYG--SSSAVEMILQHAHE---L--GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYII 520 (653)
Q Consensus 452 I~dGdvILT~g--~Ss~Ve~vL~~A~e---~--gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM 520 (653)
+.+|.+=+-.. .|.-.+.++.+|++ . +.++-|=|.=|. +|.+.+++|.+.||+|.++..=++..+.
T Consensus 100 ~~~G~VS~EV~prla~d~e~mi~eA~~L~~li~~~nv~IKIP~T~---eGl~A~~~L~~eGI~vNvTliFS~~Qa~ 172 (360)
T 3r5e_A 100 GYDGRVSIEVDPRISADRDATLAQAKELWAKVDRPNVMIKIPATP---GSLPAITDALAEGISVNVTLIFSVARYR 172 (360)
T ss_dssp TSSSEEEEECCGGGTTCHHHHHHHHHHHHHHHCCTTEEEEEESST---THHHHHHHHHHTTCCEEEEEECSHHHHH
T ss_pred CCCccEEEEecccccCCHHHHHHHHHHHHHhhCCCCeEEEeCCCH---HHHHHHHHHHHcCCceeeeeccCHHHHH
Confidence 44665443332 24444455555543 1 345555565563 8999999999999999877665554443
No 402
>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2
Probab=21.51 E-value=2.2e+02 Score=27.52 Aligned_cols=103 Identities=12% Similarity=0.121 Sum_probs=54.3
Q ss_pred EEEeCChHHHHHHH-HHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhh-----ccEEEEcce
Q 006256 458 LLTYGSSSAVEMIL-QHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHE-----VTRVFLGAS 531 (653)
Q Consensus 458 ILT~g~Ss~Ve~vL-~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~-----Vd~VllGAd 531 (653)
||..|-+..+..-| +.+.++| ..+|+++...+...- ...|....+.+.+-....+..++.. +|.||--|-
T Consensus 2 vlVtGatG~iG~~l~~~L~~~g-~~~V~~~~r~~~~~~---~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~a~ 77 (310)
T 1eq2_A 2 IIVTGGAGFIGSNIVKALNDKG-ITDILVVDNLKDGTK---FVNLVDLNIADYMDKEDFLIQIMAGEEFGDVEAIFHEGA 77 (310)
T ss_dssp EEEETTTSHHHHHHHHHHHTTT-CCCEEEEECCSSGGG---GHHHHTSCCSEEEEHHHHHHHHHTTCCCSSCCEEEECCS
T ss_pred EEEEcCccHHHHHHHHHHHHCC-CcEEEEEccCCCCch---hhhcCcceeccccccHHHHHHHHhccccCCCcEEEECcc
Confidence 66667655554333 4444445 146666654433211 1122222255555444556666664 788776543
Q ss_pred eEecC-CC-----eecccchHHHHHHHhhCCCCeeeecc
Q 006256 532 SVLSN-GT-----VCSRVGTACVAMVAYGFHIPVLVCCE 564 (653)
Q Consensus 532 aIlaN-G~-----V~NKiGT~~lAl~Ak~~~VPVyV~ae 564 (653)
..... .+ -.|-.||..+.-+|+.+++.|+.+..
T Consensus 78 ~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS 116 (310)
T 1eq2_A 78 CSSTTEWDGKYMMDNNYQYSKELLHYCLEREIPFLYASS 116 (310)
T ss_dssp CCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred cccCcccCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEee
Confidence 22110 01 13567899999899988885554443
No 403
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=21.49 E-value=2.1e+02 Score=23.72 Aligned_cols=80 Identities=14% Similarity=0.136 Sum_probs=46.5
Q ss_pred CeeEEEEeCCCCCchHHHHHHHHHh-CCCC-EEEEccch-HHHHhh--hccEEEEcceeEecCCCeecccchHHHHHHHh
Q 006256 479 KQFRVVIVDSRPKHEGKLLLRRLVR-KGLS-CTYTHINA-ISYIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAY 553 (653)
Q Consensus 479 k~f~ViV~ESRP~~EG~~La~eL~~-~GI~-vT~I~DsA-v~~iM~--~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak 553 (653)
...+|+|+|..+.. ...+...|.. .|+. |....+.. +-..+. ..|.||+..+- .+ .-|...+..+.+
T Consensus 7 ~~~~iLivdd~~~~-~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l--~~-----~~g~~~~~~l~~ 78 (143)
T 3cnb_A 7 NDFSILIIEDDKEF-ADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTVKPDVVMLDLMM--VG-----MDGFSICHRIKS 78 (143)
T ss_dssp --CEEEEECSCHHH-HHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHTCCSEEEEETTC--TT-----SCHHHHHHHHHT
T ss_pred CCceEEEEECCHHH-HHHHHHHHHhccCccEEEEECCHHHHHHHHHhcCCCEEEEeccc--CC-----CcHHHHHHHHHh
Confidence 45788888887654 3344566777 8998 66665432 222233 47888887543 22 224333444443
Q ss_pred ---hCCCCeeeecccc
Q 006256 554 ---GFHIPVLVCCEAY 566 (653)
Q Consensus 554 ---~~~VPVyV~aety 566 (653)
..++|+++++...
T Consensus 79 ~~~~~~~~ii~~s~~~ 94 (143)
T 3cnb_A 79 TPATANIIVIAMTGAL 94 (143)
T ss_dssp STTTTTSEEEEEESSC
T ss_pred CccccCCcEEEEeCCC
Confidence 3579999988754
No 404
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=21.39 E-value=1.3e+02 Score=29.34 Aligned_cols=19 Identities=16% Similarity=-0.085 Sum_probs=13.9
Q ss_pred cccchHHHHHHHhhCCCCe
Q 006256 541 SRVGTACVAMVAYGFHIPV 559 (653)
Q Consensus 541 NKiGT~~lAl~Ak~~~VPV 559 (653)
|--||..++-+++..+++.
T Consensus 82 ~v~~t~~l~~~~~~~~~~~ 100 (298)
T 4b4o_A 82 RLETTQLLAKAITKAPQPP 100 (298)
T ss_dssp HHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHHHHhCCCc
Confidence 4568888888888876653
No 405
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*
Probab=21.36 E-value=1.7e+02 Score=33.63 Aligned_cols=42 Identities=24% Similarity=0.369 Sum_probs=19.2
Q ss_pred HHHHHHHHcCCeeEEEEeCCCCCc-h--HHHHHHHHHhCCCCEEEE
Q 006256 469 MILQHAHELGKQFRVVIVDSRPKH-E--GKLLLRRLVRKGLSCTYT 511 (653)
Q Consensus 469 ~vL~~A~e~gk~f~ViV~ESRP~~-E--G~~La~eL~~~GI~vT~I 511 (653)
..|..|+++|+..+|++. ....+ + ....+++|.++||.+.+.
T Consensus 383 ~AL~~AA~rGV~VrVLvd-~~a~~~~~~n~~~~~~L~~aGV~V~~~ 427 (687)
T 1xdp_A 383 DSMIHAAHNGKKVTVVVE-LQARFDEEANIHWAKRLTEAGVHVIFS 427 (687)
T ss_dssp HHHHHHHHTTCEEEEEEC-TTCSSTTTTTTTTTHHHHHHTCEEEEC
T ss_pred HHHHHHHhcCCEEEEEEC-CCcccchhhHHHHHHHHHHCCCEEEEe
Confidence 444555555555555442 22221 1 223345555556555443
No 406
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=21.34 E-value=78 Score=26.72 Aligned_cols=56 Identities=29% Similarity=0.316 Sum_probs=35.0
Q ss_pred CCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCC-CCchHHHHHHHHHhC--CCCEEEEcc
Q 006256 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSR-PKHEGKLLLRRLVRK--GLSCTYTHI 513 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESR-P~~EG~~La~eL~~~--GI~vT~I~D 513 (653)
|..|.+.....-. +....+....+.++++|.. |...|..+++.|.+. .+++.+++.
T Consensus 27 g~~v~~~~~~~~a---~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~ 85 (143)
T 3jte_A 27 GNEVLTASSSTEG---LRIFTENCNSIDVVITDMKMPKLSGMDILREIKKITPHMAVIILTG 85 (143)
T ss_dssp TCEEEEESSHHHH---HHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEEEC
T ss_pred CceEEEeCCHHHH---HHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEEC
Confidence 5566666555433 3333333456777877754 778899999888775 456666554
No 407
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=21.32 E-value=1.5e+02 Score=29.33 Aligned_cols=30 Identities=37% Similarity=0.475 Sum_probs=12.8
Q ss_pred EEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCC
Q 006256 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSR 489 (653)
Q Consensus 457 vILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESR 489 (653)
+|+..|.++. ..+++.|.+.| ++|++++..
T Consensus 4 ~Ililg~g~~-~~l~~a~~~~G--~~v~~~~~~ 33 (334)
T 2r85_A 4 RIATYASHSA-LQILKGAKDEG--FETIAFGSS 33 (334)
T ss_dssp EEEEESSTTH-HHHHHHHHHTT--CCEEEESCG
T ss_pred EEEEECChhH-HHHHHHHHhCC--CEEEEEECC
Confidence 3455544422 23444444433 345554443
No 408
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=21.21 E-value=1.7e+02 Score=28.62 Aligned_cols=96 Identities=13% Similarity=0.075 Sum_probs=50.3
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc--------hHHHHhhhccEEE
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN--------AISYIIHEVTRVF 527 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds--------Av~~iM~~Vd~Vl 527 (653)
.+++|.|.+.++..++.... .. +|+++..-.+ +..+...+...|+.+.++... .+- +-+++.+|+
T Consensus 63 ~v~~~~g~t~al~~~~~~l~---~~-~~i~~~~~~~--~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~-~~~~~~~v~ 135 (362)
T 3ffr_A 63 EVLFLASATEIWERIIQNCV---EK-KSFHCVNGSF--SKRFYEFAGELGREAYKEEAAFGKGFYPADIT-VPADAEIIC 135 (362)
T ss_dssp EEEEESCHHHHHHHHHHHHC---SS-EEEEEECSHH--HHHHHHHHHHTTCEEEEEECCTTCCCCGGGCC-CCTTCCEEE
T ss_pred EEEEeCCchHHHHHHHHhcc---CC-cEEEEcCcHH--HHHHHHHHHHhCCCeEEEecCCCCCCCHHHHh-ccCCccEEE
Confidence 35666555556655554442 23 6666655333 233444566679988887532 111 112344444
Q ss_pred EcceeEecCCCeecccchHHHHHHHhhC-CCCeeee
Q 006256 528 LGASSVLSNGTVCSRVGTACVAMVAYGF-HIPVLVC 562 (653)
Q Consensus 528 lGAdaIlaNG~V~NKiGT~~lAl~Ak~~-~VPVyV~ 562 (653)
+- +-=-..|.+.. --.++-+|+.| ++.|+|=
T Consensus 136 ~~-~~~nptG~~~~---l~~i~~la~~~p~~~li~D 167 (362)
T 3ffr_A 136 LT-HNETSSGVSMP---VEDINTFRDKNKDALIFVD 167 (362)
T ss_dssp EE-SEETTTTEECC---HHHHTTSGGGSTTSEEEEE
T ss_pred EE-cCCCCcceeCC---HHHHHHHHHhCCCCEEEEe
Confidence 43 22223354443 23466689999 9887763
No 409
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=21.16 E-value=3.1e+02 Score=22.24 Aligned_cols=79 Identities=14% Similarity=0.166 Sum_probs=43.7
Q ss_pred CeeEEEEeCCCCCchHHHHHHHHHhCCC-CEEEEccch--HHHHhh-hccEEEEcceeEecCCCeecccchHHHHHHHh-
Q 006256 479 KQFRVVIVDSRPKHEGKLLLRRLVRKGL-SCTYTHINA--ISYIIH-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAY- 553 (653)
Q Consensus 479 k~f~ViV~ESRP~~EG~~La~eL~~~GI-~vT~I~DsA--v~~iM~-~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak- 553 (653)
+..+|+|+|..+.. ...+...|...|+ .+....+.. +..+.. ..|.||+..+ +.+. -|.-.+..+-+
T Consensus 3 ~~~~ilivdd~~~~-~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~--l~~~-----~g~~l~~~l~~~ 74 (128)
T 1jbe_A 3 KELKFLVVDDFSTM-RRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWN--MPNM-----DGLELLKTIRAX 74 (128)
T ss_dssp TTCCEEEECSCHHH-HHHHHHHHHHTTCCCEEEESSHHHHHHHHTTCCCCEEEEESC--CSSS-----CHHHHHHHHHC-
T ss_pred CccEEEEECCCHHH-HHHHHHHHHHcCCcEEEeeCCHHHHHHHHHhcCCCEEEEeCC--CCCC-----CHHHHHHHHHhh
Confidence 45678888887653 2334466777788 455554432 222222 4788887543 3322 23333334433
Q ss_pred --hCCCCeeeeccc
Q 006256 554 --GFHIPVLVCCEA 565 (653)
Q Consensus 554 --~~~VPVyV~aet 565 (653)
...+|+++++..
T Consensus 75 ~~~~~~~ii~~s~~ 88 (128)
T 1jbe_A 75 XAMSALPVLMVTAE 88 (128)
T ss_dssp -CCTTCCEEEEESS
T ss_pred cccCCCcEEEEecC
Confidence 236899988764
No 410
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=21.12 E-value=4.9e+02 Score=26.08 Aligned_cols=22 Identities=9% Similarity=0.085 Sum_probs=17.6
Q ss_pred HHHHHHhhCCCCeeeecccccc
Q 006256 547 CVAMVAYGFHIPVLVCCEAYKF 568 (653)
Q Consensus 547 ~lAl~Ak~~~VPVyV~aetyKf 568 (653)
.+-.+||+++|||++++...+-
T Consensus 212 ~Lk~lAk~~~i~vi~lsql~r~ 233 (315)
T 3bh0_A 212 DLKKMARELDVVVIALSQLSRQ 233 (315)
T ss_dssp HHHHHHHHHTCEEEEEECCCGG
T ss_pred HHHHHHHHhCCeEEEEeecCcc
Confidence 3556799999999999987643
No 411
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=21.07 E-value=1.4e+02 Score=25.71 Aligned_cols=64 Identities=9% Similarity=0.079 Sum_probs=36.9
Q ss_pred HHHHHhCCCCEEEEccchH-HHHhhhccEEEEcceeEecCCCeec--ccchHHHHHHHhhCCCCeeeec
Q 006256 498 LRRLVRKGLSCTYTHINAI-SYIIHEVTRVFLGASSVLSNGTVCS--RVGTACVAMVAYGFHIPVLVCC 563 (653)
Q Consensus 498 a~eL~~~GI~vT~I~DsAv-~~iM~~Vd~VllGAdaIlaNG~V~N--KiGT~~lAl~Ak~~~VPVyV~a 563 (653)
++.|.+.|++|+++..... ..-+.+.|.|++|+-.. . |+..- .+-.+.--+...-.++++.+++
T Consensus 20 a~~l~~~g~~v~~~~~~~~~~~~l~~~d~iiig~pty-~-~g~~p~~~~~~fl~~l~~~l~~k~~~~f~ 86 (138)
T 5nul_A 20 AKGIIESGKDVNTINVSDVNIDELLNEDILILGCSAM-T-DEVLEESEFEPFIEEISTKISGKKVALFG 86 (138)
T ss_dssp HHHHHHTTCCCEEEEGGGCCHHHHTTCSEEEEEECCB-T-TTBCCTTTHHHHHHHHGGGCTTCEEEEEE
T ss_pred HHHHHHCCCeEEEEEhhhCCHHHHhhCCEEEEEcCcc-C-CCCCChHHHHHHHHHHHhhcCCCEEEEEE
Confidence 4566778888888754432 23456899999998543 2 33332 2333322222224578887766
No 412
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=21.05 E-value=1.9e+02 Score=29.09 Aligned_cols=89 Identities=11% Similarity=0.076 Sum_probs=49.1
Q ss_pred CEEEEeCChHHHHHHHHHH-HHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccc------hHHHH---hh-hcc
Q 006256 456 DVLLTYGSSSAVEMILQHA-HELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN------AISYI---IH-EVT 524 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A-~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds------Av~~i---M~-~Vd 524 (653)
..|+|-+.+.++..+|..+ ...| -+|++. .|.+.+...+ +...|+.+.++... .+..+ +. ++.
T Consensus 73 ~~i~~~~gt~al~~~l~~~~~~~g--d~vl~~--~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~ 146 (391)
T 3dr4_A 73 HAIACNNGTTALHLALVAMGIGPG--DEVIVP--SLTYIASANS--VTYCGATPVLVDNDPRTFNLDAAKLEALITPRTK 146 (391)
T ss_dssp EEEEESSHHHHHHHHHHHHTCCTT--CEEEEE--SSSCTHHHHH--HHHTTCEEEEECBCTTTCSBCGGGSGGGCCTTEE
T ss_pred cEEEeCCHHHHHHHHHHHcCCCCc--CEEEEC--CCchHHHHHH--HHHCCCEEEEEecCccccCcCHHHHHHhcCCCce
Confidence 5677766666776666655 3333 356654 4556555433 44568888877532 11111 11 223
Q ss_pred EEEEcceeEecCCCeecccch----HHHHHHHhhCCCCeee
Q 006256 525 RVFLGASSVLSNGTVCSRVGT----ACVAMVAYGFHIPVLV 561 (653)
Q Consensus 525 ~VllGAdaIlaNG~V~NKiGT----~~lAl~Ak~~~VPVyV 561 (653)
.|++ .|..|+ -.++-+|+.|++.+++
T Consensus 147 ~v~~-----------~n~tG~~~~~~~i~~l~~~~~~~li~ 176 (391)
T 3dr4_A 147 AIMP-----------VHLYGQICDMDPILEVARRHNLLVIE 176 (391)
T ss_dssp EECC-----------BCGGGCCCCHHHHHHHHHHTTCEEEE
T ss_pred EEEE-----------ECCCCChhhHHHHHHHHHHcCCEEEE
Confidence 3331 234443 4577789999998876
No 413
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=21.03 E-value=2.5e+02 Score=25.35 Aligned_cols=79 Identities=13% Similarity=0.045 Sum_probs=43.5
Q ss_pred eeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHH-Hhh--hccEEEEcceeEecCCCeecccchHHHHHHHh-hC
Q 006256 480 QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISY-IIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAY-GF 555 (653)
Q Consensus 480 ~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~-iM~--~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak-~~ 555 (653)
..+|+|+|..|.. ...+...|...|+.|....+..-+. .+. ..|.||+..+ +.++ -|--.+..+-+ ..
T Consensus 4 ~~~ilivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--lp~~-----~g~~~~~~l~~~~~ 75 (208)
T 1yio_A 4 KPTVFVVDDDMSV-REGLRNLLRSAGFEVETFDCASTFLEHRRPEQHGCLVLDMR--MPGM-----SGIELQEQLTAISD 75 (208)
T ss_dssp CCEEEEECSCHHH-HHHHHHHHHTTTCEEEEESSHHHHHHHCCTTSCEEEEEESC--CSSS-----CHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCHHH-HHHHHHHHHhCCceEEEcCCHHHHHHhhhccCCCEEEEeCC--CCCC-----CHHHHHHHHHhcCC
Confidence 3467788776654 2233456667788777554432222 122 4688887543 3332 24333333333 34
Q ss_pred CCCeeeecccc
Q 006256 556 HIPVLVCCEAY 566 (653)
Q Consensus 556 ~VPVyV~aety 566 (653)
++||++++...
T Consensus 76 ~~~ii~ls~~~ 86 (208)
T 1yio_A 76 GIPIVFITAHG 86 (208)
T ss_dssp CCCEEEEESCT
T ss_pred CCCEEEEeCCC
Confidence 79999988654
No 414
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=20.98 E-value=2.5e+02 Score=22.76 Aligned_cols=77 Identities=14% Similarity=0.175 Sum_probs=43.3
Q ss_pred eEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHH-Hhh--hccEEEEcceeEecCCCeecccchHHHHHHHhh---
Q 006256 481 FRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISY-IIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG--- 554 (653)
Q Consensus 481 f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~-iM~--~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~--- 554 (653)
.+|.|+|..+.. ...+...|...|+.+....+..-+. .+. ..|.||+..+ +.++ -|.-.+..+-+.
T Consensus 3 ~~ilivdd~~~~-~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~dlvi~D~~--l~~~-----~g~~~~~~l~~~~~~ 74 (127)
T 2jba_A 3 RRILVVEDEAPI-REMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLAWM--LPGG-----SGIQFIKHLRRESMT 74 (127)
T ss_dssp CEEEEECSCHHH-HHHHHHHHHHTTCEEEEECSHHHHHTTCSSSCCSEEEEESE--ETTE-----EHHHHHHHHHTSTTT
T ss_pred cEEEEEcCCHHH-HHHHHHHHHHCCceEEEeCCHHHHHHHHhccCCCEEEEecC--CCCC-----CHHHHHHHHHhCccc
Confidence 367777776643 2334466777888776554432222 122 4788887543 3322 244444444443
Q ss_pred CCCCeeeeccc
Q 006256 555 FHIPVLVCCEA 565 (653)
Q Consensus 555 ~~VPVyV~aet 565 (653)
.++|+++++..
T Consensus 75 ~~~~ii~~s~~ 85 (127)
T 2jba_A 75 RDIPVVMLTAR 85 (127)
T ss_dssp TTSCEEEEEET
T ss_pred CCCCEEEEeCC
Confidence 47999998764
No 415
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=20.97 E-value=3.4e+02 Score=27.49 Aligned_cols=93 Identities=15% Similarity=-0.014 Sum_probs=48.5
Q ss_pred CCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchH-HHHHHHHHhCCCCEEEEccchHHHHh--h-hccE-EEEc
Q 006256 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEG-KLLLRRLVRKGLSCTYTHINAISYII--H-EVTR-VFLG 529 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG-~~La~eL~~~GI~vT~I~DsAv~~iM--~-~Vd~-VllG 529 (653)
.++|+|-|.+.++..+|..+ .|. +|++.+ |.+.| ..+...+...|+.+..+.| ...+- . ++.+ |++
T Consensus 77 ~~~~~~~ggt~a~~~~~~~~--~gd--~Vl~~~--~~y~~~~~~~~~~~~~g~~~~~v~d--~~~l~~~~~~~~~~v~~- 147 (374)
T 2aeu_A 77 DKCVGFNRTSSAILATILAL--KPK--KVIHYL--PELPGHPSIERSCKIVNAKYFESDK--VGEILNKIDKDTLVIIT- 147 (374)
T ss_dssp EEEEEESSHHHHHHHHHHHH--CCS--EEEEEC--SSSSCCTHHHHHHHHTTCEEEEESC--HHHHHTTCCTTEEEEEE-
T ss_pred ceEEEEcChHHHHHHHHHhC--CCC--EEEEec--CCCCccHHHHHHHHHcCcEEEEeCC--HHHHHhcCCCccEEEEE-
Confidence 34666655566776666644 443 566654 32222 1222345567998887732 22221 1 2333 333
Q ss_pred ceeEecCCCeecccc-----hHHHHHHHhhCCCCeeeec
Q 006256 530 ASSVLSNGTVCSRVG-----TACVAMVAYGFHIPVLVCC 563 (653)
Q Consensus 530 AdaIlaNG~V~NKiG-----T~~lAl~Ak~~~VPVyV~a 563 (653)
. ..-|..| --.++-+|+.|++++++=.
T Consensus 148 -----~--~p~nptG~~~~~l~~i~~l~~~~~~~li~De 179 (374)
T 2aeu_A 148 -----G--STMDLKVIELENFKKVINTAKNKEAIVFVDD 179 (374)
T ss_dssp -----C--BCTTSCBCCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred -----c--cCCCCCCCCcccHHHHHHHHHHcCCEEEEEC
Confidence 1 1234555 2345667899999887644
No 416
>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A
Probab=20.96 E-value=7.5e+02 Score=28.09 Aligned_cols=106 Identities=17% Similarity=0.167 Sum_probs=66.1
Q ss_pred HHHHhccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCC---------C-----chH----HHHHHHHHhC--CC
Q 006256 447 HAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRP---------K-----HEG----KLLLRRLVRK--GL 506 (653)
Q Consensus 447 ~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP---------~-----~EG----~~La~eL~~~--GI 506 (653)
.+.+.|. +..||.+|.+.+=..+++.+...|.. ++.++|... . .-| ..++..|.+. ++
T Consensus 319 ~g~ekL~-~arVLIVGaGGLGs~vA~~La~aGVG-~ItLvD~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~L~~iNP~V 396 (615)
T 4gsl_A 319 LNLDIIK-NTKVLLLGAGTLGCYVSRALIAWGVR-KITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLM 396 (615)
T ss_dssp CCHHHHH-TCEEEEECCSHHHHHHHHHHHHTTCC-EEEEECCCBCCTTGGGTSTTCCGGGTTSBHHHHHHHHHHHHCTTC
T ss_pred hhHHHHh-CCeEEEECCCHHHHHHHHHHHHcCCC-EEEEEcCCCCcccCcccccCCChhhcChHHHHHHHHHHHhhCCCc
Confidence 3444554 57899999886544556666666865 444444322 1 012 2334666654 56
Q ss_pred CEEEEcc-------------------chHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeec
Q 006256 507 SCTYTHI-------------------NAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (653)
Q Consensus 507 ~vT~I~D-------------------sAv~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~a 563 (653)
.++.+.. ..+..++.++|.||.+.|..-. -+.+..+|..+++|++-++
T Consensus 397 ~v~~~~~~Ipm~gh~v~~e~~~~l~~~~l~~ll~~~DlVvd~tDn~~t---------R~~ln~~c~~~~~PlI~aa 463 (615)
T 4gsl_A 397 DATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRES---------RWLPSLLSNIENKTVINAA 463 (615)
T ss_dssp EEEEECCCCCCTTCCCSCHHHHHHHHHHHHHHHHHCSEEEECCSSGGG---------THHHHHHHHHTTCEEEEEE
T ss_pred EEEEeeccccccCccccchhhhcCCHHHHHHHhhcCCEEEecCCCHHH---------HHHHHHHHHHcCCeEEEEE
Confidence 6666542 1244567889999988875532 3578889999999999764
No 417
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=20.96 E-value=2e+02 Score=31.17 Aligned_cols=89 Identities=15% Similarity=0.151 Sum_probs=51.9
Q ss_pred CCCEEEEeCChHH-HHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEccee
Q 006256 454 DGDVLLTYGSSSA-VEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASS 532 (653)
Q Consensus 454 dGdvILT~g~Ss~-Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAda 532 (653)
+...|+.+|-+.+ +-.+-+.++++ .++|.+.|.++. .++.+|.+.||++.+-.+.. .+..+|.||++.-
T Consensus 21 ~~~~v~viGiG~sG~s~~A~~l~~~--G~~V~~~D~~~~----~~~~~l~~~gi~~~~g~~~~---~~~~~d~vV~Spg- 90 (494)
T 4hv4_A 21 RVRHIHFVGIGGAGMGGIAEVLANE--GYQISGSDLAPN----SVTQHLTALGAQIYFHHRPE---NVLDASVVVVSTA- 90 (494)
T ss_dssp -CCEEEEETTTSTTHHHHHHHHHHT--TCEEEEECSSCC----HHHHHHHHTTCEEESSCCGG---GGTTCSEEEECTT-
T ss_pred cCCEEEEEEEcHhhHHHHHHHHHhC--CCeEEEEECCCC----HHHHHHHHCCCEEECCCCHH---HcCCCCEEEECCC-
Confidence 4467888875421 11122333443 468889998754 34567999999887644432 2456888876531
Q ss_pred EecCCCeecccchHHHHHHHhhCCCCeee
Q 006256 533 VLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (653)
Q Consensus 533 IlaNG~V~NKiGT~~lAl~Ak~~~VPVyV 561 (653)
|-. +...-..|++.++||+=
T Consensus 91 i~~---------~~p~~~~a~~~gi~v~~ 110 (494)
T 4hv4_A 91 ISA---------DNPEIVAAREARIPVIR 110 (494)
T ss_dssp SCT---------TCHHHHHHHHTTCCEEE
T ss_pred CCC---------CCHHHHHHHHCCCCEEc
Confidence 111 22445567778888773
No 418
>3l5o_A Uncharacterized protein from DUF364 family; RARE metals, siderophores, adenosyl binding site; 2.01A {Desulfitobacterium hafniense}
Probab=20.89 E-value=2.1e+02 Score=29.09 Aligned_cols=88 Identities=16% Similarity=0.164 Sum_probs=60.1
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcceeE
Q 006256 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSV 533 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAdaI 533 (653)
.|+.|..+|+=..+.+++ .+.+.++|+|-.|.. |. .+|.+..++++++|.||+=+.++
T Consensus 140 ~g~kV~vIG~fP~i~~~~------~~~~~l~V~E~~p~~------------g~----~p~~~~~~~lp~~D~viiTgstl 197 (270)
T 3l5o_A 140 KGKKVGVVGHFPHLESLL------EPICDLSILEWSPEE------------GD----YPLPASEFILPECDYVYITCASV 197 (270)
T ss_dssp TTSEEEEESCCTTHHHHH------TTTSEEEEEESSCCT------------TC----EEGGGHHHHGGGCSEEEEETHHH
T ss_pred CCCEEEEECCchhHHHHH------hcCCCEEEEECCCCC------------CC----CChhHHHHhhccCCEEEEEeehh
Confidence 578999999977664433 234678888988842 22 47889999999999999876555
Q ss_pred ecCCCeecccchHHHHHHHhhCCCCeeeeccccccccc
Q 006256 534 LSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHER 571 (653)
Q Consensus 534 laNG~V~NKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~ 571 (653)
. | ||..-=|--......|+++.||.-+++.
T Consensus 198 v------N--~Tl~~lL~~~~~a~~vvl~GPStp~~P~ 227 (270)
T 3l5o_A 198 V------D--KTLPRLLELSRNARRITLVGPGTPLAPV 227 (270)
T ss_dssp H------H--TCHHHHHHHTTTSSEEEEESTTCCCCGG
T ss_pred h------c--CCHHHHHhhCCCCCEEEEECCCchhhHH
Confidence 4 3 2333222222334678888999888775
No 419
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}
Probab=20.88 E-value=3.5e+02 Score=26.43 Aligned_cols=76 Identities=11% Similarity=0.143 Sum_probs=49.1
Q ss_pred CCCEEEEeCChHHHHHHH-HHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc-c----chHHHHhh------
Q 006256 454 DGDVLLTYGSSSAVEMIL-QHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-I----NAISYIIH------ 521 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL-~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~-D----sAv~~iM~------ 521 (653)
.|.+||..|-++-+...| +...++| .+|++++.|.......++.+|...|..+.++. | ..+..++.
T Consensus 28 ~~k~~lVTGas~GIG~aia~~la~~G--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 105 (280)
T 4da9_A 28 ARPVAIVTGGRRGIGLGIARALAASG--FDIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVAEF 105 (280)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHHHH
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCC--CeEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 467888888776664433 3344444 47888876655556667788888888887762 3 23444444
Q ss_pred -hccEEEEcce
Q 006256 522 -EVTRVFLGAS 531 (653)
Q Consensus 522 -~Vd~VllGAd 531 (653)
.+|.+|--|-
T Consensus 106 g~iD~lvnnAg 116 (280)
T 4da9_A 106 GRIDCLVNNAG 116 (280)
T ss_dssp SCCCEEEEECC
T ss_pred CCCCEEEECCC
Confidence 5788877663
No 420
>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}
Probab=20.87 E-value=90 Score=29.74 Aligned_cols=97 Identities=10% Similarity=0.030 Sum_probs=52.5
Q ss_pred EEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhh--ccEEEEcceeEe
Q 006256 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHE--VTRVFLGASSVL 534 (653)
Q Consensus 457 vILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~--Vd~VllGAdaIl 534 (653)
+||..|-+.-+...|.....+| .+|+++.-++..+ .|+.+-+.....+..++.. +|.||--|-...
T Consensus 2 ~ilVtGatG~iG~~l~~~L~~g--~~V~~~~r~~~~~----------~~~~~Dl~~~~~~~~~~~~~~~d~vi~~a~~~~ 69 (273)
T 2ggs_A 2 RTLITGASGQLGIELSRLLSER--HEVIKVYNSSEIQ----------GGYKLDLTDFPRLEDFIIKKRPDVIINAAAMTD 69 (273)
T ss_dssp CEEEETTTSHHHHHHHHHHTTT--SCEEEEESSSCCT----------TCEECCTTSHHHHHHHHHHHCCSEEEECCCCCC
T ss_pred EEEEECCCChhHHHHHHHHhcC--CeEEEecCCCcCC----------CCceeccCCHHHHHHHHHhcCCCEEEECCcccC
Confidence 4677777665655454443344 6787776554321 2322221112345556665 777765443211
Q ss_pred cCC--------CeecccchHHHHHHHhhCCCCeeeeccc
Q 006256 535 SNG--------TVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (653)
Q Consensus 535 aNG--------~V~NKiGT~~lAl~Ak~~~VPVyV~aet 565 (653)
.+. --+|-.|+..+.-+|+..++.|+.++..
T Consensus 70 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~iv~~SS~ 108 (273)
T 2ggs_A 70 VDKCEIEKEKAYKINAEAVRHIVRAGKVIDSYIVHISTD 108 (273)
T ss_dssp HHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEG
T ss_pred hhhhhhCHHHHHHHhHHHHHHHHHHHHHhCCeEEEEecc
Confidence 100 0135678999998898888866655543
No 421
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}
Probab=20.83 E-value=5e+02 Score=24.30 Aligned_cols=107 Identities=16% Similarity=0.124 Sum_probs=59.9
Q ss_pred CCCEEEEeCChHHHHHHH-HHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEE-cc----chHHHHhh------
Q 006256 454 DGDVLLTYGSSSAVEMIL-QHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT-HI----NAISYIIH------ 521 (653)
Q Consensus 454 dGdvILT~g~Ss~Ve~vL-~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I-~D----sAv~~iM~------ 521 (653)
.|.+||..|-+.-+..-| +.+.++| .+|++++-++ .....+..+|...|..+.++ .| ..+..++.
T Consensus 12 ~~k~vlItGasggiG~~la~~l~~~G--~~V~~~~r~~-~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 88 (260)
T 3awd_A 12 DNRVAIVTGGAQNIGLACVTALAEAG--ARVIIADLDE-AMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHEQE 88 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCH-HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC--CEEEEEeCCH-HHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 467888888877664433 4445555 5787776432 23345567777777777765 33 23444444
Q ss_pred -hccEEEEcceeEecCCC-------------eecccchHHHHHHHhh----CCCCeeeec
Q 006256 522 -EVTRVFLGASSVLSNGT-------------VCSRVGTACVAMVAYG----FHIPVLVCC 563 (653)
Q Consensus 522 -~Vd~VllGAdaIlaNG~-------------V~NKiGT~~lAl~Ak~----~~VPVyV~a 563 (653)
.+|.||--|-.....+. -+|-.|++.+.-.+.. .+...+|..
T Consensus 89 ~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~ 148 (260)
T 3awd_A 89 GRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVIVAI 148 (260)
T ss_dssp SCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEE
Confidence 47888776532221221 1366777777655543 244444443
No 422
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=20.73 E-value=7.1e+02 Score=25.77 Aligned_cols=70 Identities=14% Similarity=0.057 Sum_probs=40.0
Q ss_pred cCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc---chHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHh
Q 006256 477 LGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---NAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAY 553 (653)
Q Consensus 477 ~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D---sAv~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak 553 (653)
+...+++++.-. |...-++.++++....-.+.++.- .-+.++|..+|+|+... |+.+ +=|-
T Consensus 254 ~~~~~~~v~~~~-~~~~~~~~l~~~~~~~~~v~l~~~l~~~~~~~l~~~ad~vv~~S-------------Gg~~--~EA~ 317 (403)
T 3ot5_A 254 SREDTELVYPMH-LNPAVREKAMAILGGHERIHLIEPLDAIDFHNFLRKSYLVFTDS-------------GGVQ--EEAP 317 (403)
T ss_dssp HCTTEEEEEECC-SCHHHHHHHHHHHTTCTTEEEECCCCHHHHHHHHHHEEEEEECC-------------HHHH--HHGG
T ss_pred hCCCceEEEecC-CCHHHHHHHHHHhCCCCCEEEeCCCCHHHHHHHHHhcCEEEECC-------------ccHH--HHHH
Confidence 345567666421 221223334443222225666531 26788899999875331 5544 6788
Q ss_pred hCCCCeeee
Q 006256 554 GFHIPVLVC 562 (653)
Q Consensus 554 ~~~VPVyV~ 562 (653)
.+|+|+++.
T Consensus 318 a~g~PvV~~ 326 (403)
T 3ot5_A 318 GMGVPVLVL 326 (403)
T ss_dssp GTTCCEEEC
T ss_pred HhCCCEEEe
Confidence 899999986
No 423
>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*
Probab=20.73 E-value=1.9e+02 Score=28.89 Aligned_cols=106 Identities=12% Similarity=0.164 Sum_probs=55.4
Q ss_pred CCEEEEeCChHHHHHHH-HHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhh-----hccEEEE
Q 006256 455 GDVLLTYGSSSAVEMIL-QHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIH-----EVTRVFL 528 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL-~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~-----~Vd~Vll 528 (653)
+.+||..|-+..|..-| +.+.++| ..+|+++...+.... ...|....+.+.+-....+..++. ++|.||-
T Consensus 46 ~~~vlVtGatG~iG~~l~~~L~~~g-~~~V~~~~r~~~~~~---~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~Vih 121 (357)
T 2x6t_A 46 GRMIIVTGGAGFIGSNIVKALNDKG-ITDILVVDNLKDGTK---FVNLVDLNIADYMDKEDFLIQIMAGEEFGDVEAIFH 121 (357)
T ss_dssp --CEEEETTTSHHHHHHHHHHHHTT-CCCEEEEECCSSGGG---GGGTTTSCCSEEEEHHHHHHHHHTTCCCSSCCEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC-CcEEEEEecCCCcch---hhcccCceEeeecCcHHHHHHHHhhcccCCCCEEEE
Confidence 45688888766554433 4444555 145666654433210 111212224555444455666665 3777776
Q ss_pred cceeEecCC-C-----eecccchHHHHHHHhhCCCCeeeecc
Q 006256 529 GASSVLSNG-T-----VCSRVGTACVAMVAYGFHIPVLVCCE 564 (653)
Q Consensus 529 GAdaIlaNG-~-----V~NKiGT~~lAl~Ak~~~VPVyV~ae 564 (653)
-|-...... + -+|-.||..+.-+|+..++.|+.+..
T Consensus 122 ~A~~~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~r~V~~SS 163 (357)
T 2x6t_A 122 EGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREIPFLYASS 163 (357)
T ss_dssp CCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred CCcccCCccCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcc
Confidence 553221100 0 13667899999889888885554443
No 424
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=20.71 E-value=2.8e+02 Score=27.48 Aligned_cols=100 Identities=20% Similarity=0.180 Sum_probs=53.1
Q ss_pred CCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc--------chHHHHhh--hcc
Q 006256 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIH--EVT 524 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D--------sAv~~iM~--~Vd 524 (653)
..+++|-|.+.++..+++.+.+.| -+|++.+ |.+.+.. ..+...|+.+..+.. ..+-..+. ++.
T Consensus 86 ~~i~~~~g~t~a~~~~~~~~~~~g--d~Vl~~~--~~~~~~~--~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~ 159 (367)
T 3euc_A 86 MEVLLGNGSDEIISMLALAAARPG--AKVMAPV--PGFVMYA--MSAQFAGLEFVGVPLRADFTLDRGAMLAAMAEHQPA 159 (367)
T ss_dssp CEEEEEEHHHHHHHHHHHHTCCTT--CEEEEEE--SCSCCSC--HHHHTTTCEEEEEECCTTSCCCHHHHHHHHHHHCCS
T ss_pred ceEEEcCCHHHHHHHHHHHHcCCC--CEEEEcC--CCHHHHH--HHHHHcCCeEEEecCCCCCCCCHHHHHHHhhccCCC
Confidence 456777776777766665553334 3455543 3333322 234567888877752 22333333 466
Q ss_pred EEEEcceeEecCCCeecccchHHHHHHHhhC--CCCeee
Q 006256 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGF--HIPVLV 561 (653)
Q Consensus 525 ~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~--~VPVyV 561 (653)
+|++- ..--..|.++..---..++-+|+.| |+.+++
T Consensus 160 ~v~~~-~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~ 197 (367)
T 3euc_A 160 IVYLA-YPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVV 197 (367)
T ss_dssp EEEEE-SSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEE
T ss_pred EEEEc-CCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEE
Confidence 66662 2222344444433334555678888 887765
No 425
>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ...
Probab=20.65 E-value=2.1e+02 Score=26.05 Aligned_cols=46 Identities=20% Similarity=0.187 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHcCC-eeEEEEeCCCCCchHHHHH-HHHHhCCCCEEEEccc
Q 006256 466 AVEMILQHAHELGK-QFRVVIVDSRPKHEGKLLL-RRLVRKGLSCTYTHIN 514 (653)
Q Consensus 466 ~Ve~vL~~A~e~gk-~f~ViV~ESRP~~EG~~La-~eL~~~GI~vT~I~Ds 514 (653)
+.+.+.+.|.+.|. .++|+|=-- ..|++.+ +.|...|+.++.|.|.
T Consensus 64 aa~~~~~~~~~~Gi~~v~V~vkG~---G~Gre~airaL~~~Gl~I~~I~Dv 111 (129)
T 2vqe_K 64 AALDAAKKAMAYGMQSVDVIVRGT---GAGREQAIRALQASGLQVKSIVDD 111 (129)
T ss_dssp HHHHHHHHHHTTTCCEEEEEEESC---CTTHHHHHHHHHTSSSEEEECEEC
T ss_pred HHHHHHHHHHHhCCeEEEEEEECC---CCCHHHHHHHHHHCCCEEEEEEEc
Confidence 45677777877774 467776443 3577776 8899999999999884
No 426
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=20.61 E-value=2.7e+02 Score=22.29 Aligned_cols=76 Identities=14% Similarity=0.184 Sum_probs=41.8
Q ss_pred EEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHH-HHhh--hccEEEEcceeEecCCCeecccchHHHHHHH-hhCCC
Q 006256 482 RVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAIS-YIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVA-YGFHI 557 (653)
Q Consensus 482 ~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~-~iM~--~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~A-k~~~V 557 (653)
+|.++|..+.. ...+...|...|..|....+..-+ ..+. ..|.||+..+ +.++ -|.-.+..+- ...++
T Consensus 2 ~ilivdd~~~~-~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~dlil~D~~--l~~~-----~g~~~~~~l~~~~~~~ 73 (121)
T 2pl1_A 2 RVLVVEDNALL-RHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLG--LPDE-----DGLSLIRRWRSNDVSL 73 (121)
T ss_dssp EEEEECSCHHH-HHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSC--CSSS-----CHHHHHHHHHHTTCCS
T ss_pred eEEEEeCcHHH-HHHHHHHHhhcCCEEEEeCCHHHHHHHHhccCCCEEEEecC--CCCC-----CHHHHHHHHHhcCCCC
Confidence 56777766533 233446677788887766554322 2222 4788887543 2322 1332333333 23579
Q ss_pred Ceeeeccc
Q 006256 558 PVLVCCEA 565 (653)
Q Consensus 558 PVyV~aet 565 (653)
|+++++..
T Consensus 74 ~ii~~s~~ 81 (121)
T 2pl1_A 74 PILVLTAR 81 (121)
T ss_dssp CEEEEESC
T ss_pred CEEEEecC
Confidence 99998764
No 427
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}
Probab=20.58 E-value=3.2e+02 Score=27.78 Aligned_cols=54 Identities=20% Similarity=0.214 Sum_probs=32.2
Q ss_pred hccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEE
Q 006256 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT 511 (653)
Q Consensus 451 ~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I 511 (653)
.+..|++||.+|.+.+=...+..|...|- +||+++..+. -.++++ +.|....+-
T Consensus 186 ~~~~g~~VlV~G~G~vG~~a~qla~~~Ga--~Vi~~~~~~~--~~~~~~---~lGa~~vi~ 239 (363)
T 3uog_A 186 HLRAGDRVVVQGTGGVALFGLQIAKATGA--EVIVTSSSRE--KLDRAF---ALGADHGIN 239 (363)
T ss_dssp CCCTTCEEEEESSBHHHHHHHHHHHHTTC--EEEEEESCHH--HHHHHH---HHTCSEEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC--EEEEEecCch--hHHHHH---HcCCCEEEc
Confidence 35689999999954322233444555554 7888886542 334444 457765554
No 428
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G
Probab=20.57 E-value=1.8e+02 Score=27.25 Aligned_cols=106 Identities=10% Similarity=0.091 Sum_probs=55.9
Q ss_pred CCEEEEeCChHHHHHHH-HHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEE-cc----chHHHHhh-------
Q 006256 455 GDVLLTYGSSSAVEMIL-QHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT-HI----NAISYIIH------- 521 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL-~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I-~D----sAv~~iM~------- 521 (653)
|.+||..|-+.-+..-| +.+.++| .+|+++..|.......+..+|...|-.+.++ .| ..+..++.
T Consensus 1 ~k~vlVTGasggiG~~la~~l~~~G--~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 78 (244)
T 1edo_A 1 SPVVVVTGASRGIGKAIALSLGKAG--CKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWG 78 (244)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSS
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC--CEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 34677777766554333 3344444 4677755555444455556676666566554 33 23444444
Q ss_pred hccEEEEcceeEecCCC-------------eecccchHHHHHHHhhC----CCCeeeec
Q 006256 522 EVTRVFLGASSVLSNGT-------------VCSRVGTACVAMVAYGF----HIPVLVCC 563 (653)
Q Consensus 522 ~Vd~VllGAdaIlaNG~-------------V~NKiGT~~lAl~Ak~~----~VPVyV~a 563 (653)
.+|.||--|-. ...+. -+|-.|++.+.-.+..+ +...+|..
T Consensus 79 ~id~li~~Ag~-~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ 136 (244)
T 1edo_A 79 TIDVVVNNAGI-TRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINI 136 (244)
T ss_dssp CCSEEEECCCC-CCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCEEEECCCC-CCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 46777765532 22221 13566777776655442 44444443
No 429
>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae}
Probab=20.47 E-value=2.4e+02 Score=30.89 Aligned_cols=112 Identities=12% Similarity=0.105 Sum_probs=66.5
Q ss_pred ccCCCEEEEeCChHHHHHHH-HHHHHcCCeeEEEEe-CCCC------------CchHHHHHHHHHhCCCCEEEE-cc---
Q 006256 452 IRDGDVLLTYGSSSAVEMIL-QHAHELGKQFRVVIV-DSRP------------KHEGKLLLRRLVRKGLSCTYT-HI--- 513 (653)
Q Consensus 452 I~dGdvILT~g~Ss~Ve~vL-~~A~e~gk~f~ViV~-ESRP------------~~EG~~La~eL~~~GI~vT~I-~D--- 513 (653)
+..|.++|..|-+.-+...| +...++|.. +|+++ .-++ .....++..+|.+.|..++++ +|
T Consensus 248 ~~~~~~vLITGgsgGIG~~lA~~La~~G~~-~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvtd 326 (525)
T 3qp9_A 248 WQADGTVLVTGAEEPAAAEAARRLARDGAG-HLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLGATATVVTCDLTD 326 (525)
T ss_dssp SCTTSEEEESSTTSHHHHHHHHHHHHHTCC-EEEEEECCCC---------------CHHHHHHHHHHTCEEEEEECCTTS
T ss_pred ecCCCEEEEECCCCcHHHHHHHHHHHcCCC-EEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcCCEEEEEECCCCC
Confidence 55678888888776654433 344455643 23333 3222 122356678898899999887 33
Q ss_pred -chHHHHhhh------ccEEEEcceeEecCCCe-------------ecccchHHHHHHHhhCC-----CCeeeeccc
Q 006256 514 -NAISYIIHE------VTRVFLGASSVLSNGTV-------------CSRVGTACVAMVAYGFH-----IPVLVCCEA 565 (653)
Q Consensus 514 -sAv~~iM~~------Vd~VllGAdaIlaNG~V-------------~NKiGT~~lAl~Ak~~~-----VPVyV~aet 565 (653)
.++..++.+ +|.||-.| .+..+|.+ .|-.|++.+.-++..+. ..++|++.+
T Consensus 327 ~~~v~~~~~~i~~~g~id~vVh~A-Gv~~~~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~~~~~~~~~~~iV~~SS 402 (525)
T 3qp9_A 327 AEAAARLLAGVSDAHPLSAVLHLP-PTVDSEPLAATDADALARVVTAKATAALHLDRLLREAAAAGGRPPVLVLFSS 402 (525)
T ss_dssp HHHHHHHHHTSCTTSCEEEEEECC-CCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC----CCCEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCcEEEECC-cCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCEEEEECC
Confidence 346666654 46666555 33444433 25568888887777765 667776554
No 430
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=20.46 E-value=3.4e+02 Score=28.46 Aligned_cols=103 Identities=17% Similarity=0.097 Sum_probs=52.2
Q ss_pred CEEEEeCChHHHHHHHHHHHH-cCCeeEEEEeCCCCCchHHHHH-HHHHhC------CC-----CEEEEccc--------
Q 006256 456 DVLLTYGSSSAVEMILQHAHE-LGKQFRVVIVDSRPKHEGKLLL-RRLVRK------GL-----SCTYTHIN-------- 514 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e-~gk~f~ViV~ESRP~~EG~~La-~eL~~~------GI-----~vT~I~Ds-------- 514 (653)
.+++|-|-+.+++..|+.|.. .|+ -.|++.+ |.+.|..+. ..+... +. .+..+...
T Consensus 127 ~v~~~~sGseA~~~alk~a~~~~g~-~~ii~~~--~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 203 (453)
T 4ffc_A 127 RTALFNSGAEAVENAIKVARLATGR-PAVVAFD--NAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPG 203 (453)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHCC-CEEEEET--TCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTT
T ss_pred EEEEeCcHHHHHHHHHHHHHHhcCC-CEEEEEc--CccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccc
Confidence 577777777888888877654 243 3455543 334444332 222111 11 34444322
Q ss_pred -----hHHH-------HhhhccEEEEcceeEecCCCeecc-cchH-HHHHHHhhCCCCeee
Q 006256 515 -----AISY-------IIHEVTRVFLGASSVLSNGTVCSR-VGTA-CVAMVAYGFHIPVLV 561 (653)
Q Consensus 515 -----Av~~-------iM~~Vd~VllGAdaIlaNG~V~NK-iGT~-~lAl~Ak~~~VPVyV 561 (653)
.... .+..-+..++=.+-+..+|+++-. -+-+ .|+-+|++|++.+++
T Consensus 204 ~~~~~~~~~~~~~l~~~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~ 264 (453)
T 4ffc_A 204 LTGEEAARRAISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIA 264 (453)
T ss_dssp CCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEE
T ss_pred cchHHHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEE
Confidence 1111 111112333334557777665543 3322 366789999997764
No 431
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=20.42 E-value=2.2e+02 Score=23.63 Aligned_cols=79 Identities=13% Similarity=0.059 Sum_probs=45.6
Q ss_pred CeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchH-HHHhh--hccEEEEcceeEecCCCeecccchHHHHHHHh--
Q 006256 479 KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAI-SYIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAY-- 553 (653)
Q Consensus 479 k~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv-~~iM~--~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak-- 553 (653)
...+|+|+|..+.. ...+...|...|+.|....+..- -..+. ..|.||+..+- .+ .-|.-.+..+.+
T Consensus 6 ~~~~iLivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l--~~-----~~g~~~~~~l~~~~ 77 (142)
T 3cg4_A 6 HKGDVMIVDDDAHV-RIAVKTILSDAGFHIISADSGGQCIDLLKKGFSGVVLLDIMM--PG-----MDGWDTIRAILDNS 77 (142)
T ss_dssp CCCEEEEECSCHHH-HHHHHHHHHHTTCEEEEESSHHHHHHHHHTCCCEEEEEESCC--SS-----SCHHHHHHHHHHTT
T ss_pred CCCeEEEEcCCHHH-HHHHHHHHHHCCeEEEEeCCHHHHHHHHHhcCCCEEEEeCCC--CC-----CCHHHHHHHHHhhc
Confidence 45678888876543 33345667777888776654322 22222 47888886543 22 224334444443
Q ss_pred -hCCCCeeeeccc
Q 006256 554 -GFHIPVLVCCEA 565 (653)
Q Consensus 554 -~~~VPVyV~aet 565 (653)
..++|+++++..
T Consensus 78 ~~~~~pii~~s~~ 90 (142)
T 3cg4_A 78 LEQGIAIVMLTAK 90 (142)
T ss_dssp CCTTEEEEEEECT
T ss_pred ccCCCCEEEEECC
Confidence 346899998764
No 432
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=20.41 E-value=1.7e+02 Score=28.09 Aligned_cols=93 Identities=13% Similarity=0.134 Sum_probs=41.8
Q ss_pred CEEEEeCChHHHHHH-HHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcceeEe
Q 006256 456 DVLLTYGSSSAVEMI-LQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVL 534 (653)
Q Consensus 456 dvILT~g~Ss~Ve~v-L~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAdaIl 534 (653)
.+||..|. ..|..- ++.+.++| ++|+++.-++.. ...|...|+.+.......+. +..+|.||--|
T Consensus 6 ~~ilVtGa-G~iG~~l~~~L~~~g--~~V~~~~r~~~~-----~~~~~~~~~~~~~~D~~d~~--~~~~d~vi~~a---- 71 (286)
T 3ius_A 6 GTLLSFGH-GYTARVLSRALAPQG--WRIIGTSRNPDQ-----MEAIRASGAEPLLWPGEEPS--LDGVTHLLIST---- 71 (286)
T ss_dssp CEEEEETC-CHHHHHHHHHHGGGT--CEEEEEESCGGG-----HHHHHHTTEEEEESSSSCCC--CTTCCEEEECC----
T ss_pred CcEEEECC-cHHHHHHHHHHHHCC--CEEEEEEcChhh-----hhhHhhCCCeEEEecccccc--cCCCCEEEECC----
Confidence 35666675 433333 33333444 456655443321 12344455443332211111 44555555433
Q ss_pred cCCCeec--ccchHHHHHHHhh--CCCCeeeeccc
Q 006256 535 SNGTVCS--RVGTACVAMVAYG--FHIPVLVCCEA 565 (653)
Q Consensus 535 aNG~V~N--KiGT~~lAl~Ak~--~~VPVyV~aet 565 (653)
+... .-.+..+.-+|+. .++.-+|.+.+
T Consensus 72 ---~~~~~~~~~~~~l~~a~~~~~~~~~~~v~~Ss 103 (286)
T 3ius_A 72 ---APDSGGDPVLAALGDQIAARAAQFRWVGYLST 103 (286)
T ss_dssp ---CCBTTBCHHHHHHHHHHHHTGGGCSEEEEEEE
T ss_pred ---CccccccHHHHHHHHHHHhhcCCceEEEEeec
Confidence 2221 1224555556666 67776665544
No 433
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=20.36 E-value=7.3e+02 Score=26.48 Aligned_cols=101 Identities=12% Similarity=0.123 Sum_probs=54.6
Q ss_pred CCEEEEeCChHHHHHHHHHHHH--------cC----CeeEEEEeCCCCCchHHHHHHHHHhCCC---CEEEEcc------
Q 006256 455 GDVLLTYGSSSAVEMILQHAHE--------LG----KQFRVVIVDSRPKHEGKLLLRRLVRKGL---SCTYTHI------ 513 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~e--------~g----k~f~ViV~ESRP~~EG~~La~eL~~~GI---~vT~I~D------ 513 (653)
+..|+|-|.+.++...|..+.+ .| .+..||+.+.- +-. +.+.+.-.|+ .+.+|..
T Consensus 155 ~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~--H~s--~~~~~~~~g~g~~~~~~v~~d~~~~~ 230 (511)
T 3vp6_A 155 GDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQS--HYS--IKKAGAALGFGTDNVILIKCNERGKI 230 (511)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTS--CTH--HHHHHHHTTSCGGGEEEECBCTTSCB
T ss_pred CceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCc--hHH--HHHHHHHcCCCCCcEEEeecCCCCcc
Confidence 3567777766655555554433 23 35567776532 212 2233334455 7887752
Q ss_pred --chHHHHhhhc------cEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeee
Q 006256 514 --NAISYIIHEV------TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (653)
Q Consensus 514 --sAv~~iM~~V------d~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~ 562 (653)
..+-..+.+- .++|+....-...|.+ ..+ -.|+-+|+.||+.++|=
T Consensus 231 d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~v-d~l--~~I~~ia~~~~~~lhvD 284 (511)
T 3vp6_A 231 IPADFEAKILEAKQKGYVPFYVNATAGTTVYGAF-DPI--QEIADICEKYNLWLHVD 284 (511)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCB-CCH--HHHHHHHHHHTCEEEEE
T ss_pred CHHHHHHHHHHHHhcCCCcEEEEEecCCCCCccc-ccH--HHHHHHHHHcCCEEEEE
Confidence 2344444332 4455544333344544 333 55788899999998873
No 434
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=20.31 E-value=1.7e+02 Score=27.01 Aligned_cols=56 Identities=7% Similarity=0.143 Sum_probs=29.3
Q ss_pred EEEEeCChHHHHHHHHHHHHcC-CeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc
Q 006256 457 VLLTYGSSSAVEMILQHAHELG-KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (653)
Q Consensus 457 vILT~g~Ss~Ve~vL~~A~e~g-k~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~ 512 (653)
+|.||.....+..+|....++. ..++|||+|...-.+-.++++++.+..-.++++.
T Consensus 10 iIp~yn~~~~l~~~l~Sl~~q~~~~~eiIvvDd~S~d~t~~~~~~~~~~~~~i~~i~ 66 (240)
T 3bcv_A 10 IVPIYNVEKYLDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYAAQYPNIKVIH 66 (240)
T ss_dssp EEEESSCTTTHHHHHHHHHTCSSSSEEEEEEECCCSSSHHHHHHHHHHHCSSEEEEE
T ss_pred EEecCCCHHHHHHHHHHHHhCcCCCeEEEEEECCCCcCHHHHHHHHHhhCCCEEEEE
Confidence 3445555555666666655432 3566766665444444455555544333445553
No 435
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=20.28 E-value=3.4e+02 Score=27.41 Aligned_cols=100 Identities=14% Similarity=-0.007 Sum_probs=53.8
Q ss_pred CEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc---------chHHHHhh-----
Q 006256 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---------NAISYIIH----- 521 (653)
Q Consensus 456 dvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D---------sAv~~iM~----- 521 (653)
.+++|-|.+.++..+++...+.| -+|++.+ |.+.+...+ +...|..+..+.. ..+-..+.
T Consensus 103 ~i~~t~g~~~al~~~~~~~~~~g--d~Vl~~~--p~~~~~~~~--~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~ 176 (413)
T 3t18_A 103 SAIATPGGTGAIRSAIFSYLDEG--DPLICHD--YYWAPYRKI--CEEFGRNFKTFEFFTDDFAFNIDVYKEAIDEGIRD 176 (413)
T ss_dssp EEEEESHHHHHHHHHHHHHCCSS--CEEEEES--SCCTHHHHH--HHHHTCEEEEECCBCTTSSBCHHHHHHHHHHHHHH
T ss_pred cEEEcCccHHHHHHHHHHhcCCC--CEEEECC--CCcccHHHH--HHHhCCeEEEeeccCCCCCcCHHHHHHHHHHHhhc
Confidence 56777777777766666554333 3566544 666555433 3345777777652 12323333
Q ss_pred hccEEEEccee-EecCCCeecccchHHHHHHHh------hCCCCeee
Q 006256 522 EVTRVFLGASS-VLSNGTVCSRVGTACVAMVAY------GFHIPVLV 561 (653)
Q Consensus 522 ~Vd~VllGAda-IlaNG~V~NKiGT~~lAl~Ak------~~~VPVyV 561 (653)
+..++++=..- --..|.++..---..++-+|+ .|++.+++
T Consensus 177 ~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~ 223 (413)
T 3t18_A 177 SDRIASLINSPGNNPTGYSLSDEEWDEVITFLKEKAEDKDKKITLIV 223 (413)
T ss_dssp CSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTTSTTCEEEEEE
T ss_pred CCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Confidence 23323332221 133466666555556666777 78876654
No 436
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=20.21 E-value=6.8e+02 Score=25.26 Aligned_cols=20 Identities=15% Similarity=0.517 Sum_probs=13.9
Q ss_pred CCEEEEeCChHHHHHHHHHH
Q 006256 455 GDVLLTYGSSSAVEMILQHA 474 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A 474 (653)
..+++|.|.+.++..++..+
T Consensus 79 ~~v~~~~g~t~a~~~~~~~~ 98 (432)
T 3a9z_A 79 QDIIFTSGGTESNNLVIHST 98 (432)
T ss_dssp GGEEEESCHHHHHHHHHHHH
T ss_pred CeEEEeCChHHHHHHHHHHH
Confidence 46788877777776666554
No 437
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=20.15 E-value=3.3e+02 Score=22.71 Aligned_cols=80 Identities=13% Similarity=0.175 Sum_probs=47.9
Q ss_pred eeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccch--HHHHhh--hccEEEEcceeEecCCCeecccchHHHHHHHhhC
Q 006256 480 QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA--ISYIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGF 555 (653)
Q Consensus 480 ~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsA--v~~iM~--~Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~ 555 (653)
..+|+|+|..+.. ...+...|.+.|+.|....+.. +..+.. ..|.||+..+ +.+| .-|.-.+..+-+..
T Consensus 5 ~~~ilivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~--l~~~----~~g~~~~~~l~~~~ 77 (140)
T 3h5i_A 5 DKKILIVEDSKFQ-AKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIE--LGEG----MDGVQTALAIQQIS 77 (140)
T ss_dssp -CEEEEECSCHHH-HHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCSEEEEESS--CSSS----CCHHHHHHHHHHHC
T ss_pred CcEEEEEeCCHHH-HHHHHHHHHHcCCEEEEecChHHHHHHHhcCCCCCEEEEecc--CCCC----CCHHHHHHHHHhCC
Confidence 4578888876654 3334567778888877665532 233322 4788888653 2221 23444455555557
Q ss_pred CCCeeeecccc
Q 006256 556 HIPVLVCCEAY 566 (653)
Q Consensus 556 ~VPVyV~aety 566 (653)
++|+++++...
T Consensus 78 ~~~ii~ls~~~ 88 (140)
T 3h5i_A 78 ELPVVFLTAHT 88 (140)
T ss_dssp CCCEEEEESSS
T ss_pred CCCEEEEECCC
Confidence 89999988743
No 438
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=20.15 E-value=3.4e+02 Score=28.02 Aligned_cols=51 Identities=12% Similarity=0.093 Sum_probs=27.7
Q ss_pred CCEEEEeCChHHHHHHHHHHHH----cCCe-eEEEEeCCCCCchHHHHHHHHHhCCCCEE
Q 006256 455 GDVLLTYGSSSAVEMILQHAHE----LGKQ-FRVVIVDSRPKHEGKLLLRRLVRKGLSCT 509 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~e----~gk~-f~ViV~ESRP~~EG~~La~eL~~~GI~vT 509 (653)
..+++|.|-+.++..+|+.+.. .|.. ..|++. .+.+.... ..+...|..+.
T Consensus 92 ~~v~~t~ggt~A~~~al~~~~~~~~~~Gd~~~~viv~--~~~~~~~~--~~~~~~g~~~~ 147 (467)
T 1ax4_A 92 DYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFIS--NFHFDTTA--AHVELNGCKAI 147 (467)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEE--SSCCHHHH--HHHHHTTCEEE
T ss_pred CcEEEcCCcHHHHHHHHHHHHHhhccCCCccceEEEe--ccccchhh--HHHhccCCcee
Confidence 3577777777777777776655 4543 125555 45544322 22333455444
No 439
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*
Probab=25.47 E-value=22 Score=36.33 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=12.9
Q ss_pred CCEEEEeCChHHHHHHHHHHHH
Q 006256 455 GDVLLTYGSSSAVEMILQHAHE 476 (653)
Q Consensus 455 GdvILT~g~Ss~Ve~vL~~A~e 476 (653)
..+++|.|.+.++..+++.+.+
T Consensus 90 ~~v~~~~g~~~a~~~~~~~~~~ 111 (392)
T 3b1d_A 90 EDIVFVEGVVPAISIAIQAFTK 111 (392)
Confidence 3566666666666655555543
No 440
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=20.03 E-value=2.2e+02 Score=29.27 Aligned_cols=74 Identities=11% Similarity=0.191 Sum_probs=43.6
Q ss_pred EEEEeCChHHHHHHHHHHHHcCC-eeEEEE-eCCCCCchHHHHHHHHHhCCCCEEEEc---------cchHHHHhh--hc
Q 006256 457 VLLTYGSSSAVEMILQHAHELGK-QFRVVI-VDSRPKHEGKLLLRRLVRKGLSCTYTH---------INAISYIIH--EV 523 (653)
Q Consensus 457 vILT~g~Ss~Ve~vL~~A~e~gk-~f~ViV-~ESRP~~EG~~La~eL~~~GI~vT~I~---------DsAv~~iM~--~V 523 (653)
.||.-|+++.++.+|. +++.|. ..+|.+ +-.+|...+ + -.+.|||+.++. |..+...++ ++
T Consensus 109 ~vl~Sg~g~nl~~ll~-~~~~g~l~~~I~~Visn~~~~~~--~---A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~ 182 (302)
T 3o1l_A 109 VLMASRESHCLADLLH-RWHSDELDCDIACVISNHQDLRS--M---VEWHDIPYYHVPVDPKDKEPAFAEVSRLVGHHQA 182 (302)
T ss_dssp EEEECSCCHHHHHHHH-HHHTTCSCSEEEEEEESSSTTHH--H---HHTTTCCEEECCCCSSCCHHHHHHHHHHHHHTTC
T ss_pred EEEEeCCchhHHHHHH-HHHCCCCCcEEEEEEECcHHHHH--H---HHHcCCCEEEcCCCcCCHHHHHHHHHHHHHHhCC
Confidence 5777788899866554 555554 344443 334665432 2 346799998873 123444554 58
Q ss_pred cEEEEcce-eEecC
Q 006256 524 TRVFLGAS-SVLSN 536 (653)
Q Consensus 524 d~VllGAd-aIlaN 536 (653)
|.|++-.- .|++.
T Consensus 183 DliVlagym~IL~~ 196 (302)
T 3o1l_A 183 DVVVLARYMQILPP 196 (302)
T ss_dssp SEEEESSCCSCCCT
T ss_pred CEEEHhHhhhhcCH
Confidence 88887443 45543
Done!