RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 006256
(653 letters)
>d1vb5a_ c.124.1.5 (A:) Putative eIF-2B subunit 2-like protein
PH0440 {Pyrococcus horikoshii [TaxId: 53953]}
Length = 274
Score = 171 bits (434), Expect = 2e-49
Identities = 65/253 (25%), Positives = 110/253 (43%), Gaps = 33/253 (13%)
Query: 388 LIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKH 447
++ P S+ N RF+ + + L S F+ + A R +
Sbjct: 54 VVKVNPSMASLYNLARFI-----------PVTNRRDILKSRALEFLRR-MEEAKRELASI 101
Query: 448 AVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLS 507
I DGDV++T+ SS V I++ A E K+F+V++ +S P +EG L R L G+
Sbjct: 102 GAQLIDDGDVIITHSFSSTVLEIIRTAKERKKRFKVILTESSPDYEGLHLARELEFSGIE 161
Query: 508 CTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYK 567
+ E + +GA + +G V ++ GT +A+ + IP V E YK
Sbjct: 162 FEVITDAQMGLFCREASIAIVGADMITKDGYVVNKAGTYLLALACHENAIPFYVAAETYK 221
Query: 568 FHERVQLDSICSNELGDPDSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDYVSLI 627
FH ++ + E R+ I N+++ N+++D TP YV I
Sbjct: 222 FHPTLKSGDVMLME------------RDLIR--------GNVRIRNVLFDVTPWKYVRGI 261
Query: 628 ITDYGMI-PPTSV 639
IT+ G++ PP +
Sbjct: 262 ITELGIVIPPRDI 274
>d2a0ua1 c.124.1.5 (A:10-383) Initiation factor 2b {Leishmania major
[TaxId: 5664]}
Length = 374
Score = 169 bits (429), Expect = 1e-47
Identities = 59/298 (19%), Positives = 125/298 (41%), Gaps = 23/298 (7%)
Query: 361 AIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESE 420
A + + R++ + + F++ RP +V++ N +R LK+Q+ K+ + + +E
Sbjct: 68 ATQRKAANGELKSGREVQTFLLTSCDFVMTSRPTAVNLFNCLRDLKAQVDKLDPTKAAAE 127
Query: 421 AKATLHSDIERFINEKIILADRV-------IVKHAVTKIRDGDVLLTYGSS--------S 465
E + + + I+ A + RD +LT ++
Sbjct: 128 VAQAFVELAEAVYTNDVAFNEGIMRHGAAHILAAAKAEGRDKVSILTICNTGALATSRYG 187
Query: 466 AVEMILQHAHELGKQFRVVIVDSRPKHEG-KLLLRRLVRKGLSCTYTHINAISYIIH--E 522
+++ GK RV ++RP ++G +L + V++ + CT A S ++ +
Sbjct: 188 TALGVVRQLFYDGKLERVYACETRPWNQGARLTVYECVQEDIPCTLICDGAASSLMLNRK 247
Query: 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNEL 582
+ V +GA + NG +++GT +A+ A + + V + + E
Sbjct: 248 IDAVVVGADRICQNGDTANKIGTYNLAVSAKFHGVKLYVAAPTTTLDVKTASGNHVEIEE 307
Query: 583 GDPDSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDYVS-LIITDYGMIPPTSV 639
+P I+ + DG +L + N ++D TPS+ ++ IIT+ G+ P +
Sbjct: 308 REPTEITTNLVTKQRVVADG----PHLSIWNPVFDITPSELITGGIITEKGVQAPAAS 361
>g1w2w.1 c.124.1.5 (A:,B:) Putative methylthioribose-1-phosphate
isomerase Ypr118W {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 402
Score = 156 bits (396), Expect = 1e-42
Identities = 54/336 (16%), Positives = 114/336 (33%), Gaps = 40/336 (11%)
Query: 344 ICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIR 403
I G + + D +T + ++ + FL+ RP +V++ N++
Sbjct: 58 IVGSLSVLTEVQLIKHNPTSDVATLYSLVNWESTKTVLNKRLDFLLSSRPTAVNLSNSLV 117
Query: 404 FLKSQIAKIPISLSESEAKAT-----LHSDIERFINEKIILADRVIVKHAVTKIRDGDVL 458
+K+ + + + + D+ + A +I +D +
Sbjct: 118 EIKNILKSSSDLKAFDGSLYNYVCELIDEDLANNMKMGDNGAKYLIDVLQKDGFKDEFAV 177
Query: 459 LTYGSS----------------SAVEMILQHAHELGKQFRVVIVDSRPKHEG-KLLLRRL 501
LT ++ S + L + + V +++RP ++G +L L
Sbjct: 178 LTICNTGSLATSGYGTALGVIRSLWKDSLAKTDKCPRMGHVFPLETRPYNQGSRLTAYEL 237
Query: 502 VRKGLSCTYTHINAISYIIHE----VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHI 557
V + T ++I+Y I + F+GA ++ NG +++GT +A++ F I
Sbjct: 238 VYDKIPSTLITDSSIAYRIRTSPIPIKAAFVGADRIVRNGDTANKIGTLQLAVICKQFGI 297
Query: 558 PVLVCCEAYKFHERVQLDSICSNELGDPDSISKVPGREDINHLDGWDKS----------- 606
V + E +P+ V G +
Sbjct: 298 KFFVVAPKTTIDNVTETGDDIIVEERNPEEFKVVTGTVINPENGSLILNESGEPITGKVG 357
Query: 607 ---ENLQLLNLIYDATPSDYVSLIITDYGMIPPTSV 639
+ + N +D TP + + IIT+ G+ S
Sbjct: 358 IAPLEINVWNPAFDITPHELIDGIITEEGVFTKNSS 393
>d1t5oa_ c.124.1.5 (A:) Putative eIF-2B delta-subunit {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 340
Score = 135 bits (341), Expect = 1e-35
Identities = 62/280 (22%), Positives = 120/280 (42%), Gaps = 28/280 (10%)
Query: 379 AKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKII 438
+ FL RP +V++ I + + E L + E+ +
Sbjct: 74 EHLKKAADFLASTRPTAVNLFVGIE----RALNAALKGESVEEVKELALREAEKLAEEDV 129
Query: 439 LADRVIVKHAVTKIRDGDVLLTYGSS--------SAVEMILQHAHELGKQFRVVIVDSRP 490
+R + ++ + DGDV+LTY ++ +++ A E GK+ RV+ ++RP
Sbjct: 130 ERNRKMGEYGAELLEDGDVVLTYCNAGRLATVDWGTALGVVRSAVEQGKEIRVIACETRP 189
Query: 491 KHEG-KLLLRRLVRKGLSCTYTHINAISYIIH--EVTRVFLGASSVLSNGTVCSRVGTAC 547
++G +L L+ G+ T + + ++ V +V +GA ++ + V +++GT
Sbjct: 190 LNQGSRLTCWELMEDGIDVTLITDSMVGIVMQKGMVDKVIVGADRIVRD-AVFNKIGTYT 248
Query: 548 VAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGDPDSISKVPGREDINHLDGWDKSE 607
V++VA +IP V F + E P E I
Sbjct: 249 VSVVAKHHNIPFYVAAPKATFDWERTAKDVVIEE---------RPREELIFCGKRQIAPL 299
Query: 608 NLQLLNLIYDATPSDYVSLIITDYGMIPP---TSVPVIVR 644
N+++ N +D TP + V+ +IT+YG+I P +VP +++
Sbjct: 300 NVKVYNPAFDPTPLENVTALITEYGVIYPPYEVNVPKVLK 339
>d1t9ka_ c.124.1.5 (A:) Probable methylthioribose-1-phosphate
isomerase TM0911 {Thermotoga maritima [TaxId: 2336]}
Length = 340
Score = 135 bits (340), Expect = 1e-35
Identities = 54/263 (20%), Positives = 111/263 (42%), Gaps = 23/263 (8%)
Query: 388 LIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKH 447
L RP +V++ A+ ++ + + E + + I ++ I K+
Sbjct: 82 LARTRPTAVNLFWALNRMEKVFFENADRENLFEILENEALKM----AYEDIEVNKAIGKN 137
Query: 448 AVTKIRDGDVLLTYGSSSAVEMI--------LQHAHELGKQFRVVIVDSRPKHEG-KLLL 498
I+DG +LT+ ++ A+ + ++ A E GK+ RV ++RP +G +L
Sbjct: 138 GAQLIKDGSTILTHCNAGALATVDYGTALGVIRAAVESGKRIRVFADETRPYLQGARLTA 197
Query: 499 RRLVRKGLSCTYTHINAISYIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFH 556
L++ G+ N +++ + V +GA + NG +++GT +A++A +
Sbjct: 198 WELMKDGIEVYVITDNMAGWLMKRGLIDAVVVGADRIALNGDTANKIGTYSLAVLAKRNN 257
Query: 557 IPVLVCCEAYKFHERVQLDSICSNELGDPDSISKVPGREDINHLDGWDKSENLQLLNLIY 616
IP V ++ E P+ ++ G E +++LN +
Sbjct: 258 IPFYVAAPVSTIDPTIRSGEEIPIEERRPEEVTHCGGN--------RIAPEGVKVLNPAF 309
Query: 617 DATPSDYVSLIITDYGMIPPTSV 639
D T + ++ IIT+ G+I P
Sbjct: 310 DVTENTLITAIITEKGVIRPPFE 332
>d2guka1 d.360.1.1 (A:4-114) Hypothetical protein PG1857
{Porphyromonas gingivalis [TaxId: 837]}
Length = 111
Score = 32.0 bits (73), Expect = 0.056
Identities = 12/73 (16%), Positives = 23/73 (31%), Gaps = 15/73 (20%)
Query: 465 SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEV- 523
S + + + H +E K R +++ + + RL + I Y
Sbjct: 5 SDLRVFMHHIYEFEKGVRSMVLATLANDDIPYAEERLRSRQ----------IPYFAQPTP 54
Query: 524 ----TRVFLGASS 532
T +F G
Sbjct: 55 NTERTNLFFGCKE 67
>d1m0sa1 c.124.1.4 (A:1-126,A:199-219) D-ribose-5-phosphate
isomerase (RpiA), catalytic domain {Haemophilus
influenzae [TaxId: 727]}
Length = 147
Score = 28.6 bits (63), Expect = 1.2
Identities = 9/72 (12%), Positives = 25/72 (34%), Gaps = 1/72 (1%)
Query: 442 RVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRL 501
++ + A+ ++ ++ GS S V ++ + + + + S+ E
Sbjct: 8 KLAAQAALQYVKADRIVGV-GSGSTVNCFIEALGTIKDKIQGAVAASKESEELLRKQGIE 66
Query: 502 VRKGLSCTYTHI 513
V + I
Sbjct: 67 VFNANDVSSLDI 78
>d1uj4a1 c.124.1.4 (A:3-131,A:206-227) D-ribose-5-phosphate
isomerase (RpiA), catalytic domain {Thermus thermophilus
[TaxId: 274]}
Length = 151
Score = 27.8 bits (61), Expect = 2.6
Identities = 16/131 (12%), Positives = 33/131 (25%), Gaps = 11/131 (8%)
Query: 442 RVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRL 501
+ A+ ++DG V+ G+ S + ++ + V P L
Sbjct: 8 KEAAHAAIAYVQDGMVVGL-GTGSTARYAVLELARRLREGELKGVVGVPTSRATEEL--- 63
Query: 502 VRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561
I + V GA + + +G A + +
Sbjct: 64 ------AKREGIPLVDLPPEGVDLAIDGADEIAPGLALIKGMGGALLREKIVERVAKEFI 117
Query: 562 C-CEAYKFHER 571
+ K
Sbjct: 118 VIADHTKKVPV 128
>d1ooya1 c.124.1.3 (A:261-481) Succinate:CoA transferase, C-terminal
domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 221
Score = 28.2 bits (62), Expect = 2.8
Identities = 8/43 (18%), Positives = 12/43 (27%), Gaps = 1/43 (2%)
Query: 440 ADRVIVKHAVTKIRDGDVL-LTYGSSSAVEMILQHAHELGKQF 481
I+K A + DG L G + + Q
Sbjct: 2 VRERIIKRAALEFEDGMYANLGIGIPLLASNFISPNMTVHLQS 44
>d2gqba1 a.282.1.1 (A:1-130) Hypothetical protein RPA2825
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 130
Score = 27.4 bits (61), Expect = 3.0
Identities = 13/49 (26%), Positives = 20/49 (40%)
Query: 211 KAAAKAEGIKTPAATALANAKPTKSTRPSPQRNDSPVVVAASEKKGGDR 259
AAA G + PA T A PT + D ++ + K G++
Sbjct: 15 SAAASPGGAQAPATTGAAGTAPTAPQPTAAPSIDVAPILDKAVKAKGEK 63
>d2ahua2 c.124.1.2 (A:4-276) Putative enzyme YdiF N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 273
Score = 28.1 bits (62), Expect = 3.1
Identities = 14/88 (15%), Positives = 25/88 (28%), Gaps = 13/88 (14%)
Query: 448 AVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFR-------------VVIVDSRPKHEG 494
AV I D L G+ + L +++ + D +
Sbjct: 18 AVNYIPDEATLCVLGAGGGILEATTLITALADKYKQTQTPRNLSIISPTGLGDRADRGIS 77
Query: 495 KLLLRRLVRKGLSCTYTHINAISYIIHE 522
L LV+ L + IS + +
Sbjct: 78 PLAQEGLVKWALCGHWGQSPRISDLAEQ 105
>d2ahua1 c.124.1.3 (A:283-529) Putative enzyme YdiF C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 247
Score = 28.1 bits (62), Expect = 3.3
Identities = 5/37 (13%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 440 ADRVIVKHAVTKIRDGDVL-LTYGSSSAVEMILQHAH 475
+++ + A+ ++R G V + G + + ++ +
Sbjct: 5 QRKLVARRALFEMRKGAVGNVGVGIADGIGLVAREEG 41
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 26.8 bits (59), Expect = 4.5
Identities = 23/100 (23%), Positives = 33/100 (33%), Gaps = 31/100 (31%)
Query: 125 VKQQGAASSFPGGGFEV---PPSVKAPSSVPASGLTTVSVVKLPPGISENAGGSVSVEVQ 181
V + +S G FEV PPS AS +
Sbjct: 5 VIELNKCTS--GQSFEVILKPPSFDGVPEFNAS-------------------------LP 37
Query: 182 SDRALNSKPLKEKTSKAE-RRAIQEAQRAAKAAAKAEGIK 220
R + + +++K AE RR QEA+ A K E +
Sbjct: 38 RRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHER 77
>d1zcha1 d.90.1.1 (A:1-249) Hypothetical oxidoreductase YcnD
{Bacillus subtilis [TaxId: 1423]}
Length = 249
Score = 27.5 bits (60), Expect = 5.0
Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 7/83 (8%)
Query: 544 GTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGDPDSISKVPGR---EDINHL 600
G V + A + L E + + V S +G P S R E +NH
Sbjct: 129 GLGTVPIGAVRGNPQEL--IELLELPKYVFPLSGLV--IGHPADRSAKKPRLPQEAVNHQ 184
Query: 601 DGWDKSENLQLLNLIYDATPSDY 623
+ + + L YD S+Y
Sbjct: 185 ETYLNQDELTSHIQAYDEQMSEY 207
>d1lk5a1 c.124.1.4 (A:1-130,A:211-229) D-ribose-5-phosphate
isomerase (RpiA), catalytic domain {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 149
Score = 26.6 bits (58), Expect = 6.1
Identities = 19/131 (14%), Positives = 39/131 (29%), Gaps = 10/131 (7%)
Query: 442 RVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRL 501
++ K A+ I D V+ G+ S ++ E K+ + + P +L
Sbjct: 8 KIAAKEALKFIEDDMVIGL-GTGSTTAYFIKLLGEKLKRGEISDIVGVPTS----YQAKL 62
Query: 502 VRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561
+ ++ + I GA V N + G A + +
Sbjct: 63 LAIEHDIPIASLDQVDAIDV----AVDGADEVDPNLNLIKGRGAALTMEKIIEYRAGTFI 118
Query: 562 C-CEAYKFHER 571
+ K +
Sbjct: 119 VLVDERKLVDY 129
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.131 0.378
Gapped
Lambda K H
0.267 0.0474 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,334,418
Number of extensions: 109507
Number of successful extensions: 340
Number of sequences better than 10.0: 1
Number of HSP's gapped: 330
Number of HSP's successfully gapped: 17
Length of query: 653
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 562
Effective length of database: 1,158,166
Effective search space: 650889292
Effective search space used: 650889292
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.0 bits)