BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006257
(653 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q56X46|MSL2_ARATH Mechanosensitive ion channel protein 2, chloroplastic
OS=Arabidopsis thaliana GN=MSL2 PE=2 SV=1
Length = 673
Score = 769 bits (1987), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/642 (61%), Positives = 470/642 (73%), Gaps = 73/642 (11%)
Query: 1 MKAASMAFTKSYNALQCSPQALKLVPGIAIIVFATWGLGPLMRQSRNLLLRKSDNSWKKS 60
+KA ++ TKS+ +Q P KLVP +A++VF+ WGL P RQ RN+LL K+DN WKKS
Sbjct: 90 VKAVTVVLTKSHGLMQQFPFVYKLVPAVALLVFSLWGLVPFARQGRNILLNKNDNGWKKS 149
Query: 61 KTHHVMTSYIQPLMLWTGAILICRALDPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCL 120
T+HVMTSY+QPL+LW GA+ ICRALDPVVLPTEA ++VK RLLNFVRSLSTVLAFAYCL
Sbjct: 150 GTYHVMTSYVQPLLLWLGALFICRALDPVVLPTEASKIVKDRLLNFVRSLSTVLAFAYCL 209
Query: 121 SSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGG 180
SSLIQQ QK F ET++ D RNMGFQFAGKA+YSAVWVA+ SLFMELLGFSTQKWLTAGG
Sbjct: 210 SSLIQQTQKLFSETSNPSDTRNMGFQFAGKALYSAVWVAAVSLFMELLGFSTQKWLTAGG 269
Query: 181 LGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVR 240
LGTVL+TLAGREI TNFLSS MIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTI+R
Sbjct: 270 LGTVLITLAGREILTNFLSSVMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIIR 329
Query: 241 GEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVADMRKVLAKNPQ 300
GEDREA+HIPNHKFTVNVVRNL+QK+HWRIKTHLAISHLDV+KIN+IVADMRKVLAKNP
Sbjct: 330 GEDREAIHIPNHKFTVNVVRNLTQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPM 389
Query: 301 VEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARL 360
VEQQRLHRRVFL+N+ PENQAL IL+SCFVKTSHHEEYL VKEAILLDLLRVISHHRARL
Sbjct: 390 VEQQRLHRRVFLENVIPENQALSILISCFVKTSHHEEYLGVKEAILLDLLRVISHHRARL 449
Query: 361 ATPIRTVQKIFSDADLENVPFADTIYNRGGGASNRPLLLIEPPYRINGEDKTKSQTRPSR 420
ATPIRT++K++++ D+EN PF +++Y GG S RPL+LIEP Y+INGEDK+KSQ R ++
Sbjct: 450 ATPIRTIRKMYTETDVENTPFGESMY--GGVTSRRPLMLIEPAYKINGEDKSKSQNRAAK 507
Query: 421 SSGEQDGKTTPRLTPDVKADSKVSVSSKSDSKADAKIPEAPNSDTREDKNGAAAHMSDPK 480
+ EQ+ K ++ K +S D KA+ K+ E+P SDT
Sbjct: 508 PTAEQENK---------GSNPKSKETSSPDLKANVKVGESPVSDT--------------- 543
Query: 481 VADKVTVKSTSKSFPKTKSKVAEISSSEPKVLGSTSDNPT-KDRKVSDSKQPKIVGQGNA 539
+KV E + ++P V+ + S PT KD + S +++PK G
Sbjct: 544 ------------------NKVPEETVAKP-VIKAVSKPPTPKDTETSGTEKPKAKRSGGT 584
Query: 540 TQNSKIDNPSISSSGGSDKAGGLQESKQESNKLPSTQPPVSRPALEENIVLGVALEGSKR 599
+++K D S+S S LEENIVLGVALEGSKR
Sbjct: 585 IKSTKTDETDSSTSSASRS------------------------TLEENIVLGVALEGSKR 620
Query: 600 TLPIEEGM--PSSQPVVKELTTANRN-GNVSSTAEKEKKDGQ 638
TLPIEE + P + KELT A R+ GN A+KE+KD Q
Sbjct: 621 TLPIEEEIHSPPMETDAKELTGARRSGGNGPLVADKEQKDSQ 662
>sp|Q8L7W1|MSL3_ARATH Mechanosensitive ion channel protein 3, chloroplastic
OS=Arabidopsis thaliana GN=MSL3 PE=2 SV=1
Length = 678
Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/609 (56%), Positives = 440/609 (72%), Gaps = 44/609 (7%)
Query: 1 MKAASMAFTKSYNALQCSPQALKLVPGIAIIVFATWGLGPLMRQSRNLLLRK-SDNSWKK 59
+K+ ++ FT+ Y+AL +P +KL+P + I+ FATWGL PL+R +R L K +D + +K
Sbjct: 91 LKSTAVIFTRVYDALGGNPHLVKLIPAVGILAFATWGLRPLLRLARTTLFEKGNDANSQK 150
Query: 60 SKTHHVMTSYIQPLMLWTGAILICRALDPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYC 119
S T +++ SY+QPL+LW+GAIL+CR LDP+VLP+ AG+ +KQRLL F RS+STVLAF+ C
Sbjct: 151 SSTQYIVVSYLQPLLLWSGAILLCRTLDPIVLPSSAGQAIKQRLLIFARSISTVLAFSCC 210
Query: 120 LSSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAG 179
LSSL+QQ QKFFMET + D RNMGF FAGKAVY+A WVA+ASLFMELLGFSTQKWLTAG
Sbjct: 211 LSSLLQQVQKFFMETNNPADTRNMGFSFAGKAVYTAAWVAAASLFMELLGFSTQKWLTAG 270
Query: 180 GLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIV 239
GLGTVLLTLAGREI TNFLSS MIHATRPFVLNEWIQTKI GYEVSGTVE VGWWSPTI+
Sbjct: 271 GLGTVLLTLAGREILTNFLSSIMIHATRPFVLNEWIQTKIGGYEVSGTVEQVGWWSPTII 330
Query: 240 RGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVADMRKVLAKNP 299
RG+DREAVHIPNH+F+VN+VRNL+QK+HWRIKTHLAISHLDV KIN+IVADMRKVL+KNP
Sbjct: 331 RGDDREAVHIPNHQFSVNIVRNLTQKTHWRIKTHLAISHLDVSKINNIVADMRKVLSKNP 390
Query: 300 QVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRAR 359
Q+EQQ++HRRVFL++I+PENQAL IL+SCFVKTS EEYLCVKEA+LLDLL VI HH AR
Sbjct: 391 QIEQQKIHRRVFLEDIDPENQALRILISCFVKTSRFEEYLCVKEAVLLDLLTVIRHHGAR 450
Query: 360 LATPIRTVQKIFSDADLENVPFADTIYNRGGGASNRPLLLIEPPYRINGEDKTKSQTRPS 419
LATPIRTVQ++ ++A+++ F+D ++N+ A NR +LIEP Y+IN +D +KS PS
Sbjct: 451 LATPIRTVQRMRNEAEVDTAGFSDIVFNQA--AMNRRYMLIEPSYKINSDDNSKS---PS 505
Query: 420 RSSGEQDGKTTPRLTPDVKADSKVSVSSKSDSKADAKIPEAPNSDTREDKNGAAAHMSDP 479
S G++ +P +P K++ + + E P+ E +N + +S+
Sbjct: 506 PSPGQK----SP--SPGQKSEER-------------DLQEEPSETKAETENNGSVPVSNA 546
Query: 480 KVAD-KVTVKSTSKSFPKTKSKVAEISSSEPKVLGSTSDNPTKDRKVSDSKQPKIVGQGN 538
K + K + S S + K S STSD P + S+ K+ + VG +
Sbjct: 547 KKENQKAALGSNSNTGTKGSST-------------STSDQPVAQK--SEEKKKESVGDPH 591
Query: 539 ATQNSKI--DNPSISSSGGSDKAGGLQESKQESNKLPSTQPPVSRPALEENIVLGVALEG 596
+ ++ D +I + S G +++ ES S LEEN+VLGVAL+G
Sbjct: 592 KAEKDEVSDDEATIEQTLKSKAKQGSEKNNGESKARDGGGSGTS-SLLEENLVLGVALDG 650
Query: 597 SKRTLPIEE 605
SKRTLPI+E
Sbjct: 651 SKRTLPIDE 659
>sp|P0AEB5|YNAI_ECOLI MscS family inner membrane protein YnaI OS=Escherichia coli (strain
K12) GN=ynaI PE=1 SV=1
Length = 343
Score = 103 bits (258), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 112/211 (53%), Gaps = 8/211 (3%)
Query: 158 VASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQT 217
V L+ E G S LT GG+G + + +AG++I +NF S M++ RPF + +WI++
Sbjct: 128 VVLVLLYGEHFGMSLSGLLTFGGIGGLAVGMAGKDILSNFFSGIMLYFDRPFSIGDWIRS 187
Query: 218 KIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAIS 277
E GTV +G W T + D +++PN F+ V N + ++ RI T + +
Sbjct: 188 PDRNIE--GTVAEIG-WRITKITTFDNRPLYVPNSLFSSISVENPGRMTNRRITTTIGLR 244
Query: 278 HLDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINP-ENQALLILVSCFVKTSHHE 336
+ D K+ IV +R++L +P ++Q R+ L N + +L I+V CF KT+
Sbjct: 245 YEDAAKVGVIVEAVREMLKNHPAIDQ----RQTLLVYFNQFADSSLNIMVYCFTKTTVWA 300
Query: 337 EYLCVKEAILLDLLRVISHHRARLATPIRTV 367
E+L ++ + L ++ ++ H A A P +T+
Sbjct: 301 EWLAAQQDVYLKIIDIVQSHGADFAFPSQTL 331
>sp|P0AEB6|YNAI_ECO57 MscS family inner membrane protein YnaI OS=Escherichia coli O157:H7
GN=ynaI PE=3 SV=1
Length = 343
Score = 103 bits (258), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 112/211 (53%), Gaps = 8/211 (3%)
Query: 158 VASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQT 217
V L+ E G S LT GG+G + + +AG++I +NF S M++ RPF + +WI++
Sbjct: 128 VVLVLLYGEHFGMSLSGLLTFGGIGGLAVGMAGKDILSNFFSGIMLYFDRPFSIGDWIRS 187
Query: 218 KIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAIS 277
E GTV +G W T + D +++PN F+ V N + ++ RI T + +
Sbjct: 188 PDRNIE--GTVAEIG-WRITKITTFDNRPLYVPNSLFSSISVENPGRMTNRRITTTIGLR 244
Query: 278 HLDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINP-ENQALLILVSCFVKTSHHE 336
+ D K+ IV +R++L +P ++Q R+ L N + +L I+V CF KT+
Sbjct: 245 YEDAAKVGVIVEAVREMLKNHPAIDQ----RQTLLVYFNQFADSSLNIMVYCFTKTTVWA 300
Query: 337 EYLCVKEAILLDLLRVISHHRARLATPIRTV 367
E+L ++ + L ++ ++ H A A P +T+
Sbjct: 301 EWLAAQQDVYLKIIDIVQSHGADFAFPSQTL 331
>sp|O25170|Y415_HELPY Uncharacterized MscS family protein HP_0415 OS=Helicobacter pylori
(strain ATCC 700392 / 26695) GN=HP_0415 PE=3 SV=1
Length = 623
Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 117/262 (44%), Gaps = 37/262 (14%)
Query: 132 METTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGR 191
M T + + R K VY +++ + ++ LGF+ + + G+G + + LA +
Sbjct: 349 MATKSTHNFRKEVINLILKVVYFLIFIVALLGVLKQLGFNVSAIIASLGIGGLAVALAVK 408
Query: 192 EIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPN 251
++ NF +S ++ F +WI EV GTV +G TI R D + +PN
Sbjct: 409 DVLANFFASVILLLDNSFSQGDWIVCG----EVEGTVVEMGLRRTTI-RAFDNALLSVPN 463
Query: 252 HKFTVNVVRNLS-QKSHWRIKTHLAISHLDVHK-INSIVADMRKVLAKNPQV-------- 301
+ +RN S +K RIK + +++ + V D++++L +P++
Sbjct: 464 SELAGKPIRNWSRRKVGRRIKMEIGLTYSSSQSALQLCVKDIKEMLENHPKIANGADSAL 523
Query: 302 ----EQQRLHRR----------------VFLDNINPENQALLILVSCFVKTSHHEEYLCV 341
+ + + ++ VFLD + ++ ILV CF KT EE+L V
Sbjct: 524 QNVSDYRYMFKKDIVSIDDFLGYKNNLFVFLDQF--ADSSINILVYCFSKTVVWEEWLEV 581
Query: 342 KEAILLDLLRVISHHRARLATP 363
KE ++L ++ ++ H A P
Sbjct: 582 KEDVMLKIMGIVEKHHLSFAFP 603
>sp|Q9ZKG7|Y415_HELPJ Uncharacterized MscS family protein jhp_0969 OS=Helicobacter pylori
(strain J99) GN=jhp_0969 PE=3 SV=1
Length = 623
Score = 73.6 bits (179), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 112/244 (45%), Gaps = 37/244 (15%)
Query: 150 KAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPF 209
K VY +++ + ++ LGF+ + + G+G + + LA +++ NF +S ++ F
Sbjct: 367 KVVYFLIFIVALLGVLKQLGFNVSAIIASLGIGGLAVALAVKDVLANFFASVILLLDNSF 426
Query: 210 VLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLS-QKSHW 268
+WI EV GTV +G TI R D + +PN + +RN S +K
Sbjct: 427 SQGDWIVCG----EVEGTVVEMGLRRTTI-RAFDNALLSVPNSELAGKPIRNWSRRKVGR 481
Query: 269 RIKTHLAISHLDVHK-INSIVADMRKVLAKNPQV------------EQQRLHRR------ 309
RIK + +++ + V D++++L +P++ + + + ++
Sbjct: 482 RIKMEIGLTYSSSQSALQLCVKDIKEMLENHPKIANGADSALQNASDYRYMFKKDIVSID 541
Query: 310 ----------VFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRAR 359
VFLD + ++ ILV CF KT EE+L VKE ++L ++ ++ H
Sbjct: 542 DFLGYKNNLFVFLDQF--ADSSINILVYCFSKTVVWEEWLEVKEDVMLKIMGIVEKHHLS 599
Query: 360 LATP 363
A P
Sbjct: 600 FAFP 603
>sp|O66994|Y812_AQUAE Uncharacterized MscS family protein aq_812 OS=Aquifex aeolicus
(strain VF5) GN=aq_812 PE=3 SV=1
Length = 368
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 134/266 (50%), Gaps = 13/266 (4%)
Query: 106 FVRSLSTVL---AFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASAS 162
F+++ S ++ A L+ + +FF++ A +G F K + + V V +
Sbjct: 104 FLKTFSLLILGWAIIRFLNLFHNKIVEFFVKVGGKDFAEEVG-DFILKILKAFVVVIVGA 162
Query: 163 LFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGY 222
++ G + L + GL + ++LA ++ F N LS +I +P + E ++ K
Sbjct: 163 SLLQEWGVNIGAILASVGLLGLAVSLAAKDTFENILSGLIILLDKPVKVGETVKVK---- 218
Query: 223 EVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISH-LDV 281
+ G+VE +G S T +R D+ V IPN N V N ++++ R++ ++ + +
Sbjct: 219 DFMGSVEDIGLRS-TKIRTFDKSLVTIPNRDIVNNHVENFTRRNKRRVRFYIGVVYSTKR 277
Query: 282 HKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCV 341
++ +I+ ++R++L ++P V + V+ +N + +L IL+ + T+ +EEYL +
Sbjct: 278 EQLENILKEIRELLKEHPGVAKDE-KFYVYFENYG--DSSLNILIQYYANTNDYEEYLKI 334
Query: 342 KEAILLDLLRVISHHRARLATPIRTV 367
E I L ++ ++ + + A P R+V
Sbjct: 335 IEDINLKIMEIVEKNGSSFAFPSRSV 360
>sp|Q8VZL4|MSL1_ARATH Mechanosensitive ion channel protein 1, mitochondrial
OS=Arabidopsis thaliana GN=MSL1 PE=2 SV=1
Length = 497
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 92/198 (46%), Gaps = 9/198 (4%)
Query: 166 ELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVS 225
E G + Q LT GG+G V A R+I N LS + +RPF + + I+ V
Sbjct: 301 EACGVAVQSILTVGGVGGVATAFAARDILGNVLSGLSMQFSRPFSMGD----TIKAGSVE 356
Query: 226 GTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWR-IKTHLAISHLDVHKI 284
G V +G + +++ E + V +PN F+ V+ N S ++ WR I + + + D+ I
Sbjct: 357 GQVIEMGLTTTSLLNAE-KFPVLVPNSLFSSQVIVNKS-RAQWRAIASKIPLQIDDLDMI 414
Query: 285 NSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEA 344
I +++++L N +V + +L + L I C + EE ++
Sbjct: 415 PQISNEIKEMLRSNTKVFLGKEAPHCYLSRVEKSFAELTI--GCNLIRMGKEELYNTQQE 472
Query: 345 ILLDLLRVISHHRARLAT 362
+LL+ +++I H L T
Sbjct: 473 VLLEAVKIIKKHGVSLGT 490
>sp|Q58543|MSMJL_METJA Large-conductance mechanosensitive channel MscMJLR
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1143
PE=1 SV=1
Length = 361
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 77/154 (50%), Gaps = 14/154 (9%)
Query: 188 LAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAV 247
LA + + +N ++ +I +PF + WI T G SG VE +G S T +R D +
Sbjct: 181 LASQNLVSNLIAGLIILTDKPFKIGNWI-TFSGG---SGIVEDIGIRS-TKIRATDNSII 235
Query: 248 HIPNHKFTVNVVRNLSQKSHWRIKTHLAISH-LDVHKINSIVADMRKVLAKNPQVEQQ-- 304
+PN K +++N+ K+ W++ T + +++ V KI ++ +L ++P VE +
Sbjct: 236 VVPNSKLIDEIIQNVPSKNKWKVSTTIGVTYNTPVEKIRKAEEIIKNILLEHPNVEDEPI 295
Query: 305 RLHRRVFLDNINPENQALLILVSCFVKTSHHEEY 338
++ + F D +L I V ++K S + Y
Sbjct: 296 TVYFKEFGD------WSLNIQVVYYIKNSRYNGY 323
>sp|O07594|YHDY_BACSU Uncharacterized MscS family protein YhdY OS=Bacillus subtilis
(strain 168) GN=yhdY PE=3 SV=1
Length = 371
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/218 (19%), Positives = 95/218 (43%), Gaps = 10/218 (4%)
Query: 147 FAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHAT 206
F K + + S S+ + + ++ GLG + LA ++ +NF +I
Sbjct: 136 FLSKLLRFVIIALSVSVIAQEFNYDVNGFVAGLGLGGLAFALAAKDTISNFFGGIIIITE 195
Query: 207 RPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKS 266
+PF + +W++T V+G+VE + + S T R V +PN ++ + N ++ +
Sbjct: 196 KPFTIGDWVETS----TVTGSVEDITFRS-TRFRTAQGALVTVPNSTLSMEAITNWTRMT 250
Query: 267 HWRIKTHLAISHLD-VHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLIL 325
+I + +S+ + + + +R +L ++ V+ + + V D L
Sbjct: 251 KRQITFSIHVSYATPIENLERSIHSLRTMLLEHEGVDNEII--MVNFDTFADSYYNLFF- 307
Query: 326 VSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATP 363
+ + KT+ E L ++E I ++ ++ + A P
Sbjct: 308 -NFYTKTTVWAENLNIREDINYKIIEILGAEGVQFAYP 344
>sp|P42531|Y1270_CORGL Uncharacterized protein Cgl1270/cg1434 OS=Corynebacterium
glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 /
LMG 3730 / NCIMB 10025) GN=Cgl1270 PE=4 SV=2
Length = 491
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 66/163 (40%), Gaps = 11/163 (6%)
Query: 132 METTDSGDARNMGFQFAGKAVYSAVWVASASLF---MELLGFSTQKWLTAGGLGTVLLTL 188
+E+ D FAG VY A VA L M+ GFS + + + L
Sbjct: 8 VESAADADTTKNQLAFAGVGVYIAQIVAFFMLAVSAMQAFGFSLAGAAIPATIASAAIGL 67
Query: 189 AGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVH 248
+ I +FL+ I + F + +W++ + G V GTV + + T +R +E V
Sbjct: 68 GAQSIVADFLAGFFILTEKQFGVGDWVRFEGNGIVVEGTVIEITMRA-TKIRTIAQETVI 126
Query: 249 IPNH--KFTVNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVA 289
IPN K +N N S R + I L I ++A
Sbjct: 127 IPNSTAKVCINNSNNWS-----RAVVVIPIPMLGSENITDVIA 164
>sp|Q57634|MSMJS_METJA Small-conductance mechanosensitive channel MscMJ
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0170
PE=1 SV=1
Length = 350
Score = 40.8 bits (94), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 80/175 (45%), Gaps = 13/175 (7%)
Query: 196 NFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFT 255
NF++ +I +PF L W+ K++G E G VE +G S T +R D + IPN +
Sbjct: 182 NFIAGILILIDKPFSLGHWV--KVKGAE--GIVEEIGIRS-TRIRTFDYTLITIPNSELL 236
Query: 256 VNVVRNLSQKSHWRIKTHLAISH-LDVHKINSIVADMRKVLAKNP-QVEQQRLHRRVFLD 313
+ + NL+ + R+ + +++ V KI +++++ +P + R+H R + D
Sbjct: 237 DSAIENLTVRDRRRVLMTIGLTYNTPVEKIKRAKEIIKEIVENHPATLPPYRVHFREYGD 296
Query: 314 NINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTVQ 368
+L + V FV+ + YL + I L + +A P TV
Sbjct: 297 ------WSLNLRVEYFVRNMGFDYYLNAVDEINLKIKEEFEKEGIEMAFPTYTVY 345
>sp|Q6A026|PDS5A_MOUSE Sister chromatid cohesion protein PDS5 homolog A OS=Mus musculus
GN=Pds5a PE=3 SV=3
Length = 1332
Score = 36.2 bits (82), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 79/173 (45%), Gaps = 30/173 (17%)
Query: 420 RSSGEQDGKTTPRLTPDVKADSKVSVSSKSDSKADAKIPEAPNSDTREDKNGAAAHMSDP 479
RS+G + G ++ A+S++S S+ S S+ + EA + E++ +S
Sbjct: 1157 RSAGTETGS-------NINANSELSPSAGSRSREQSS--EASETGVSENEENPVRIISVT 1207
Query: 480 KVADKVTVKSTSKSFPKTKSKVAEISSSEPK---VLGSTSDNPTK-DRKVSDS------- 528
V + TVK+ K +S ISS K V + ++N K D KV +S
Sbjct: 1208 PVKNIDTVKN--KEINSDQSTQGNISSDRGKKRIVTAAGAENIQKPDEKVDESGPPAPSK 1265
Query: 529 ----KQPKIVGQGNATQNSKIDNPSISSSGGSDKAGGLQESKQESN-KLPSTQ 576
++PK QGNAT+N ++ P S G +A G QES + N K P Q
Sbjct: 1266 PRRGRRPKSESQGNATKNDDLNKP---VSKGRKRAAGSQESLEAGNAKAPKLQ 1315
>sp|A4L9P7|PDS5A_RAT Sister chromatid cohesion protein PDS5 homolog A OS=Rattus norvegicus
GN=Pds5a PE=2 SV=1
Length = 1333
Score = 33.1 bits (74), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Query: 519 PTKDRKVSDSKQPKIVGQGNATQNSKIDNPSISSSGGSDKAGGLQESKQESN-KLPSTQ 576
P+K R+ ++PK QGNAT+N + P S G +A G QES + N K P Q
Sbjct: 1264 PSKPRR---GRRPKSESQGNATKNDDLSKP---VSKGRKRAAGSQESLEAGNAKAPKLQ 1316
>sp|P39955|SAP1_YEAST Protein SAP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SAP1 PE=1 SV=1
Length = 897
Score = 33.1 bits (74), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 84/195 (43%), Gaps = 36/195 (18%)
Query: 428 KTTPRLTPDVKADSKVSVSSKSDSKADAKIPEAPNSDTREDKNGAAAH---MSDPKVADK 484
K+TP K+++K + S + S + PNS ++ K A A ++ KVA
Sbjct: 404 KSTPTFITRSKSNTKPIIKSNASSPTSSLT--VPNSVIQKPKTAAMAAKRVLNSKKVASN 461
Query: 485 VTVKSTSKSFPKTKSKVAEISSSEPKVLGSTSDNPTKDRKVSDSK-------QPKIVGQG 537
+ +T KS P KSK A++ +S K TS +P+ R VS+SK Q K +
Sbjct: 462 PALNTTKKSHPILKSKTAKVPNSSSK---KTSSHPS--RPVSNSKPYSHGASQNKKPSKN 516
Query: 538 NATQNS----------KIDNPSISSSGGSD---KAGGLQESKQESNKLPSTQPPVSRPAL 584
T S KI +P I G D A L E ++E P V R L
Sbjct: 517 QTTSMSKTNRKIPAQKKIGSPKIEDVGTEDATEHATSLNEQREE----PEIDKKVLREIL 572
Query: 585 EENIVLGVALEGSKR 599
E+ I+ +L+G R
Sbjct: 573 EDEII--DSLQGVDR 585
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.128 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 234,137,164
Number of Sequences: 539616
Number of extensions: 9759681
Number of successful extensions: 31103
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 609
Number of HSP's that attempted gapping in prelim test: 24857
Number of HSP's gapped (non-prelim): 3807
length of query: 653
length of database: 191,569,459
effective HSP length: 124
effective length of query: 529
effective length of database: 124,657,075
effective search space: 65943592675
effective search space used: 65943592675
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 65 (29.6 bits)