Query 006257
Match_columns 653
No_of_seqs 284 out of 2170
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 20:39:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006257.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006257hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10334 mechanosensitive chan 100.0 1.3E-43 2.9E-48 370.6 36.2 250 103-370 28-278 (286)
2 PRK11465 putative mechanosensi 100.0 2.4E-40 5.3E-45 378.3 43.6 289 64-368 425-723 (741)
3 PRK11281 hypothetical protein; 100.0 2.8E-39 6E-44 384.4 42.9 252 102-370 835-1089(1113)
4 PRK10929 putative mechanosensi 100.0 1.3E-38 2.9E-43 377.4 43.7 251 103-370 833-1086(1109)
5 COG3264 Small-conductance mech 100.0 4.7E-35 1E-39 332.7 36.8 250 104-370 559-811 (835)
6 PF00924 MS_channel: Mechanose 100.0 6.3E-36 1.4E-40 296.0 22.1 203 150-360 2-206 (206)
7 COG0668 MscS Small-conductance 100.0 1.2E-33 2.7E-38 294.9 35.5 211 144-368 82-296 (316)
8 KOG4629 Predicted mechanosensi 99.8 2.8E-18 6E-23 196.2 14.7 219 143-368 478-699 (714)
9 PRK10263 DNA translocase FtsK; 90.4 4.9 0.00011 50.8 15.0 25 18-42 15-39 (1355)
10 COG0053 MMT1 Predicted Co/Zn/C 86.1 54 0.0012 35.4 19.2 33 267-299 244-277 (304)
11 PRK12438 hypothetical protein; 83.8 64 0.0014 40.2 18.9 13 205-217 332-345 (991)
12 PF03699 UPF0182: Uncharacteri 83.0 93 0.002 38.0 19.7 25 148-172 247-271 (774)
13 PRK00068 hypothetical protein; 83.0 61 0.0013 40.3 18.3 19 150-168 261-279 (970)
14 COG2274 SunT ABC-type bacterio 80.2 98 0.0021 37.4 18.6 39 162-200 285-323 (709)
15 PRK11281 hypothetical protein; 79.4 76 0.0017 40.3 17.9 19 147-165 618-636 (1113)
16 COG4956 Integral membrane prot 78.7 31 0.00067 37.5 12.3 11 246-256 187-197 (356)
17 PRK11465 putative mechanosensi 78.0 1.3E+02 0.0027 36.7 18.5 25 145-169 423-447 (741)
18 TIGR01654 bact_immun_7tm bacte 75.0 1.5E+02 0.0033 35.5 18.3 9 294-302 404-412 (679)
19 PRK10334 mechanosensitive chan 71.6 1E+02 0.0022 32.9 14.4 21 285-305 251-271 (286)
20 PRK10263 DNA translocase FtsK; 70.1 1E+02 0.0022 39.6 15.6 29 14-43 15-43 (1355)
21 COG3264 Small-conductance mech 69.8 2.7E+02 0.0059 34.3 18.4 29 343-371 731-759 (835)
22 COG1033 Predicted exporters of 69.8 2.4E+02 0.0052 34.3 18.1 75 115-189 259-337 (727)
23 PRK05886 yajC preprotein trans 68.1 17 0.00037 33.6 6.5 37 209-249 39-75 (109)
24 PRK02509 hypothetical protein; 67.3 3.3E+02 0.0072 34.2 20.0 19 148-166 329-347 (973)
25 TIGR00844 c_cpa1 na(+)/h(+) an 67.1 2.9E+02 0.0063 34.0 18.1 15 603-617 778-792 (810)
26 PF12794 MscS_TM: Mechanosensi 66.9 2E+02 0.0044 31.5 17.3 61 111-177 165-226 (340)
27 PRK10929 putative mechanosensi 66.7 3.4E+02 0.0075 34.7 19.2 16 55-70 588-603 (1109)
28 PF04791 LMBR1: LMBR1-like mem 65.1 1.6E+02 0.0034 33.3 15.0 11 147-157 119-129 (471)
29 PRK05585 yajC preprotein trans 64.4 19 0.0004 33.1 6.0 39 209-251 53-91 (106)
30 PF12794 MscS_TM: Mechanosensi 64.3 2.2E+02 0.0048 31.1 17.2 42 145-186 122-165 (340)
31 PF03176 MMPL: MMPL family; I 64.1 76 0.0016 33.9 11.7 7 176-182 279-285 (333)
32 TIGR00739 yajC preprotein tran 63.7 22 0.00047 31.3 6.1 37 209-249 38-74 (84)
33 PF11449 DUF2899: Protein of u 61.0 1.2E+02 0.0026 33.0 12.1 43 144-186 178-224 (298)
34 COG1480 Predicted membrane-ass 59.3 3.9E+02 0.0085 32.3 17.1 20 179-198 442-461 (700)
35 TIGR00844 c_cpa1 na(+)/h(+) an 58.1 4.4E+02 0.0096 32.5 17.5 29 23-51 207-235 (810)
36 COG1862 YajC Preprotein transl 55.3 38 0.00083 30.7 6.3 40 209-252 44-83 (97)
37 PF15420 Abhydrolase_9_N: Alph 55.1 2.5E+02 0.0055 28.8 18.4 38 15-53 5-42 (208)
38 PF04123 DUF373: Domain of unk 54.8 3.4E+02 0.0073 30.1 16.8 17 8-24 145-161 (344)
39 PRK05415 hypothetical protein; 54.4 3.4E+02 0.0074 30.1 20.4 62 112-177 226-291 (341)
40 TIGR00833 actII Transport prot 53.6 4.4E+02 0.0096 32.8 17.2 26 163-188 293-318 (910)
41 PF05552 TM_helix: Conserved T 53.6 24 0.00051 28.0 4.2 35 100-135 12-46 (53)
42 PF07331 TctB: Tripartite tric 53.1 1.3E+02 0.0027 27.9 9.8 29 148-176 72-100 (141)
43 PRK12438 hypothetical protein; 53.1 5.7E+02 0.012 32.3 20.0 12 145-156 165-176 (991)
44 COG4988 CydD ABC-type transpor 51.9 4.7E+02 0.01 30.9 19.3 12 347-358 425-436 (559)
45 PRK03612 spermidine synthase; 51.5 4.5E+02 0.0097 30.5 21.1 31 148-178 153-183 (521)
46 PF06442 DHFR_2: R67 dihydrofo 50.9 19 0.00042 30.3 3.3 42 194-239 8-50 (78)
47 PRK12911 bifunctional preprote 49.6 4.9E+02 0.011 34.0 16.3 24 147-170 1006-1029(1403)
48 PRK02509 hypothetical protein; 48.9 6.5E+02 0.014 31.7 18.5 32 181-216 194-226 (973)
49 PRK11462 putative transporter; 48.6 3.9E+02 0.0085 30.0 14.5 16 47-62 66-81 (460)
50 COG1377 FlhB Flagellar biosynt 47.9 4.4E+02 0.0096 29.5 17.2 15 345-359 297-311 (363)
51 PF03030 H_PPase: Inorganic H+ 47.6 5.9E+02 0.013 30.9 17.8 25 104-128 74-98 (682)
52 PF07290 DUF1449: Protein of u 47.5 1.5E+02 0.0032 30.4 9.8 17 70-86 62-78 (202)
53 COG4956 Integral membrane prot 47.3 2.3E+02 0.0049 31.1 11.4 21 24-44 45-65 (356)
54 TIGR02865 spore_II_E stage II 47.1 1.8E+02 0.0038 35.6 12.1 13 347-359 468-480 (764)
55 PF14348 DUF4400: Domain of un 46.1 2.8E+02 0.006 27.8 11.6 74 120-197 123-197 (198)
56 PRK00068 hypothetical protein; 45.1 7.4E+02 0.016 31.3 19.0 12 145-156 163-174 (970)
57 COG1459 PulF Type II secretory 44.4 4.4E+02 0.0096 29.7 13.9 30 64-93 158-187 (397)
58 PF03699 UPF0182: Uncharacteri 42.9 7.3E+02 0.016 30.6 19.1 11 145-155 155-165 (774)
59 PLN03223 Polycystin cation cha 42.8 7.6E+02 0.016 32.5 16.3 15 149-163 1328-1342(1634)
60 PRK10845 colicin V production 42.8 3.3E+02 0.0072 26.6 14.3 69 108-177 64-133 (162)
61 KOG2568 Predicted membrane pro 42.3 6.3E+02 0.014 29.6 17.8 16 116-131 354-369 (518)
62 KOG3386 Copper transporter [In 42.2 3.1E+02 0.0068 26.9 10.8 44 143-188 92-135 (155)
63 PRK08156 type III secretion sy 41.8 5.4E+02 0.012 28.7 17.1 9 290-298 288-296 (361)
64 smart00739 KOW KOW (Kyprides, 41.0 46 0.001 22.1 3.6 24 208-232 1-26 (28)
65 PRK09554 feoB ferrous iron tra 40.5 2.1E+02 0.0046 35.0 11.3 58 145-202 509-592 (772)
66 PRK06531 yajC preprotein trans 40.5 72 0.0015 29.8 5.8 38 209-250 37-75 (113)
67 COG1457 CodB Purine-cytosine p 40.0 4.4E+02 0.0096 30.2 13.1 22 66-87 155-176 (442)
68 PF14545 DBB: Dof, BCAP, and B 39.7 1.1E+02 0.0024 29.7 7.1 81 201-287 15-96 (142)
69 PRK13875 conjugal transfer pro 39.6 6.4E+02 0.014 28.9 19.1 29 171-201 234-262 (440)
70 TIGR03796 NHPM_micro_ABC1 NHPM 39.4 7.3E+02 0.016 29.6 18.6 9 583-591 568-576 (710)
71 PF05297 Herpes_LMP1: Herpesvi 39.4 9.9 0.00021 40.6 0.0 15 165-179 129-143 (381)
72 COG4291 Predicted membrane pro 39.2 3.1E+02 0.0066 28.4 10.3 65 128-194 71-135 (228)
73 COG4705 Uncharacterized membra 38.8 4.7E+02 0.01 27.2 15.1 54 164-217 160-217 (258)
74 PF06454 DUF1084: Protein of u 37.4 5.4E+02 0.012 27.5 16.2 35 9-43 11-45 (281)
75 KOG4016 Synaptic vesicle prote 37.3 1.1E+02 0.0023 31.7 6.8 71 141-213 103-174 (233)
76 PF09953 DUF2187: Uncharacteri 37.2 54 0.0012 27.0 3.9 27 209-239 4-30 (57)
77 PF06638 Strabismus: Strabismu 37.1 4.1E+02 0.0089 30.9 12.1 11 37-47 105-115 (505)
78 PRK13022 secF preprotein trans 36.8 5.6E+02 0.012 27.4 12.8 24 148-171 228-251 (289)
79 COG0370 FeoB Fe2+ transport sy 36.7 1.9E+02 0.0041 34.7 9.8 57 145-201 498-576 (653)
80 TIGR00966 3a0501s07 protein-ex 36.1 5.1E+02 0.011 26.8 12.6 23 148-170 199-221 (246)
81 TIGR01129 secD protein-export 36.1 5.3E+02 0.012 29.0 12.9 7 163-169 361-367 (397)
82 PF03845 Spore_permease: Spore 35.5 2.9E+02 0.0062 29.4 10.4 23 19-41 33-55 (320)
83 PRK11715 inner membrane protei 35.4 4.6E+02 0.0099 30.0 12.3 21 167-187 403-423 (436)
84 PRK05702 flhB flagellar biosyn 35.2 4.2E+02 0.0092 29.4 11.8 25 104-128 187-211 (359)
85 PF06123 CreD: Inner membrane 35.2 5.8E+02 0.013 29.2 13.0 15 22-36 298-312 (430)
86 PRK00409 recombination and DNA 35.1 2.2E+02 0.0047 34.9 10.3 46 207-255 635-680 (782)
87 PF12961 DUF3850: Domain of Un 34.4 77 0.0017 27.3 4.6 32 204-235 24-56 (72)
88 KOG3614 Ca2+/Mg2+-permeable ca 34.0 3.2E+02 0.0068 35.4 11.4 33 8-40 780-812 (1381)
89 TIGR02120 GspF general secreti 33.9 6.8E+02 0.015 27.6 15.0 30 64-93 161-190 (399)
90 COG1615 Uncharacterized conser 33.8 9.8E+02 0.021 29.4 14.9 12 205-217 309-320 (885)
91 PRK12911 bifunctional preprote 33.7 4.1E+02 0.0089 34.5 12.3 27 146-172 1338-1364(1403)
92 COG4425 Predicted membrane pro 33.1 8.3E+02 0.018 28.4 14.0 51 75-133 54-104 (588)
93 COG1283 NptA Na+/phosphate sym 33.0 8.7E+02 0.019 28.6 15.6 16 68-83 43-58 (533)
94 PF14045 YIEGIA: YIEGIA protei 32.7 4.9E+02 0.011 28.1 11.1 18 77-94 36-53 (285)
95 COG1030 NfeD Membrane-bound se 32.6 2.8E+02 0.0062 31.6 9.9 11 64-74 226-236 (436)
96 PF13726 Na_H_antiport_2: Na+- 32.4 69 0.0015 28.6 4.1 44 158-201 6-50 (88)
97 PF03176 MMPL: MMPL family; I 32.3 5.6E+02 0.012 27.2 12.0 9 178-186 278-286 (333)
98 COG3671 Predicted membrane pro 32.3 4.5E+02 0.0097 25.0 11.7 41 37-77 38-78 (125)
99 PF02699 YajC: Preprotein tran 32.1 16 0.00036 31.8 0.2 39 207-249 35-73 (82)
100 PF14801 GCD14_N: tRNA methylt 31.3 25 0.00054 28.6 1.1 12 206-217 3-14 (54)
101 PLN03159 cation/H(+) antiporte 31.2 1.1E+03 0.024 29.2 18.0 8 164-171 287-294 (832)
102 PRK03557 zinc transporter ZitB 31.0 6.9E+02 0.015 26.8 19.2 41 145-186 158-198 (312)
103 PRK05812 secD preprotein trans 30.5 7.2E+02 0.016 28.9 13.0 14 156-169 439-452 (498)
104 COG1377 FlhB Flagellar biosynt 30.1 6.9E+02 0.015 28.0 12.2 9 290-298 300-308 (363)
105 PF04156 IncA: IncA protein; 29.7 1.2E+02 0.0026 29.8 5.9 28 161-188 22-50 (191)
106 COG4858 Uncharacterized membra 29.5 5.1E+02 0.011 26.6 10.0 112 74-192 102-214 (226)
107 PF07760 DUF1616: Protein of u 29.1 3.3E+02 0.0071 29.0 9.4 22 167-188 81-102 (287)
108 PF11282 DUF3082: Protein of u 29.0 4.1E+02 0.0088 23.5 9.9 30 108-137 9-38 (82)
109 PRK12468 flhB flagellar biosyn 28.4 8.9E+02 0.019 27.2 16.6 23 103-125 143-165 (386)
110 PF05128 DUF697: Domain of unk 28.3 5.2E+02 0.011 24.9 10.0 20 116-135 50-69 (162)
111 PRK08559 nusG transcription an 28.3 1.7E+02 0.0037 28.2 6.5 47 207-254 93-145 (153)
112 TIGR00328 flhB flagellar biosy 28.3 6.3E+02 0.014 27.9 11.7 25 104-128 180-204 (347)
113 COG4873 Uncharacterized protei 28.1 67 0.0015 27.3 3.1 28 208-239 23-50 (81)
114 PF09378 HAS-barrel: HAS barre 27.9 56 0.0012 27.9 2.8 32 203-234 15-49 (91)
115 PF00575 S1: S1 RNA binding do 27.8 2.9E+02 0.0063 22.4 7.0 46 209-264 2-47 (74)
116 PRK13692 (3R)-hydroxyacyl-ACP 26.9 2.2E+02 0.0047 27.7 7.0 16 202-217 90-105 (159)
117 PF05552 TM_helix: Conserved T 26.9 1.3E+02 0.0029 23.7 4.6 28 24-52 18-45 (53)
118 TIGR01193 bacteriocin_ABC ABC- 26.6 1.2E+03 0.025 28.0 19.4 9 583-591 563-571 (708)
119 TIGR00427 membrane protein, Ma 26.6 4E+02 0.0087 27.0 9.1 31 158-188 58-88 (201)
120 PF14163 SieB: Superinfection 26.2 1.1E+02 0.0023 29.4 4.7 26 106-131 34-59 (151)
121 PRK02983 lysS lysyl-tRNA synth 26.2 1.5E+03 0.032 29.1 15.8 20 340-359 460-479 (1094)
122 PF11674 DUF3270: Protein of u 25.5 3.3E+02 0.0071 24.5 7.2 47 145-191 39-85 (90)
123 PF01914 MarC: MarC family int 25.5 4.7E+02 0.01 26.5 9.4 28 161-188 58-85 (203)
124 COG2211 MelB Na+/melibiose sym 25.4 6.3E+02 0.014 29.2 11.3 11 49-59 71-81 (467)
125 PRK08156 type III secretion sy 25.4 6.9E+02 0.015 27.9 11.3 24 105-128 176-199 (361)
126 PRK12721 secretion system appa 25.3 9.6E+02 0.021 26.6 17.4 16 344-359 289-304 (349)
127 PLN03223 Polycystin cation cha 25.2 5.5E+02 0.012 33.7 11.3 10 208-217 1462-1471(1634)
128 TIGR00405 L26e_arch ribosomal 24.7 1.7E+02 0.0038 27.6 5.8 25 207-232 85-111 (145)
129 TIGR00921 2A067 The (Largely A 24.7 1.2E+03 0.027 27.6 19.2 25 165-189 310-334 (719)
130 PRK13109 flhB flagellar biosyn 24.7 7.7E+02 0.017 27.4 11.5 113 20-132 90-217 (358)
131 PRK12721 secretion system appa 24.2 7.7E+02 0.017 27.3 11.4 24 105-128 181-204 (349)
132 PF01810 LysE: LysE type trans 24.1 6.6E+02 0.014 24.3 14.3 18 147-164 171-188 (191)
133 PF00873 ACR_tran: AcrB/AcrD/A 24.1 9.8E+02 0.021 30.1 13.7 149 18-206 331-480 (1021)
134 COG4317 Uncharacterized protei 24.1 2.3E+02 0.0051 25.1 5.8 44 157-200 12-55 (93)
135 COG1269 NtpI Archaeal/vacuolar 23.7 1.3E+03 0.029 27.7 16.5 8 175-182 525-532 (660)
136 PRK10614 multidrug efflux syst 23.7 1E+03 0.023 30.0 13.8 36 267-302 557-593 (1025)
137 PF08611 DUF1774: Fungal prote 23.5 1.5E+02 0.0033 26.9 4.8 38 167-204 26-64 (97)
138 PRK13024 bifunctional preprote 23.4 1.4E+03 0.031 27.9 15.9 15 156-170 372-386 (755)
139 PRK10739 putative antibiotic t 23.2 6E+02 0.013 25.8 9.6 32 157-188 54-85 (197)
140 PF02933 CDC48_2: Cell divisio 23.1 1.7E+02 0.0037 23.8 4.7 31 204-234 14-44 (64)
141 PRK09108 type III secretion sy 22.9 9.4E+02 0.02 26.7 11.8 112 21-132 84-210 (353)
142 CHL00204 ycf1 Ycf1; Provisiona 22.9 1.3E+03 0.027 31.3 14.1 18 80-97 129-146 (1832)
143 PF02934 GatB_N: GatB/GatE cat 22.8 4E+02 0.0087 28.8 8.6 152 196-360 82-242 (289)
144 COG0601 DppB ABC-type dipeptid 22.8 1E+03 0.022 25.9 20.7 63 141-203 235-306 (317)
145 PF00467 KOW: KOW motif; Inte 22.8 1.3E+02 0.0029 21.3 3.5 22 211-233 1-24 (32)
146 PRK12468 flhB flagellar biosyn 22.7 8.4E+02 0.018 27.4 11.4 24 105-128 188-211 (386)
147 PTZ00243 ABC transporter; Prov 22.6 1.9E+03 0.042 29.2 18.6 16 170-185 498-513 (1560)
148 TIGR01995 PTS-II-ABC-beta PTS 22.5 1.4E+03 0.029 27.3 18.4 31 61-91 138-168 (610)
149 PF06011 TRP: Transient recept 22.5 1.1E+03 0.024 26.4 14.3 18 199-216 367-384 (438)
150 PRK11404 putative PTS system 22.4 9.7E+02 0.021 27.7 12.2 24 62-85 172-196 (482)
151 COG1230 CzcD Co/Zn/Cd efflux s 22.4 1E+03 0.022 25.9 13.5 41 141-182 156-196 (296)
152 PRK10573 type IV pilin biogene 22.3 6.9E+02 0.015 27.5 10.8 29 64-92 159-187 (399)
153 PRK10694 acyl-CoA esterase; Pr 22.2 1.1E+02 0.0024 28.8 3.9 31 202-240 61-91 (133)
154 CHL00084 rpl19 ribosomal prote 22.1 5.6E+02 0.012 24.1 8.3 26 207-232 21-54 (117)
155 PF03739 YjgP_YjgQ: Predicted 22.1 9.1E+02 0.02 25.7 11.4 23 164-186 83-105 (354)
156 cd03452 MaoC_C MaoC_C The C-t 22.1 1.5E+02 0.0032 27.9 4.7 16 202-217 82-97 (142)
157 COG4425 Predicted membrane pro 21.8 1.3E+03 0.028 26.9 13.7 35 16-51 70-104 (588)
158 COG4452 CreD Inner membrane pr 21.7 1.2E+03 0.026 26.5 12.7 23 164-186 394-416 (443)
159 PF05297 Herpes_LMP1: Herpesvi 21.5 31 0.00067 37.1 0.0 12 148-159 173-184 (381)
160 PRK10420 L-lactate permease; P 21.4 1.4E+03 0.03 27.0 14.7 17 110-126 80-96 (551)
161 TIGR02611 conserved hypothetic 21.4 7.1E+02 0.015 23.6 10.5 56 70-132 24-79 (121)
162 COG4781 Membrane domain of mem 21.3 1.1E+03 0.024 25.9 13.6 141 24-164 168-320 (340)
163 PRK11598 putative metal depend 21.2 1.4E+03 0.03 26.9 16.1 11 349-359 308-318 (545)
164 PRK15083 PTS system mannitol-s 20.9 1.5E+03 0.032 27.1 15.2 15 345-359 395-409 (639)
165 COG0342 SecD Preprotein transl 20.8 3.8E+02 0.0083 31.2 8.5 29 157-189 378-406 (506)
166 PRK09579 multidrug efflux prot 20.7 1.8E+03 0.038 28.0 14.9 36 267-302 555-591 (1017)
167 PF08566 Pam17: Mitochondrial 20.7 3.1E+02 0.0068 27.5 6.7 34 167-200 71-104 (173)
168 PF14221 DUF4330: Domain of un 20.6 1.5E+02 0.0032 29.3 4.5 43 209-252 72-117 (168)
169 TIGR00914 2A0601 heavy metal e 20.5 1.2E+03 0.026 29.5 13.5 11 68-78 909-919 (1051)
170 PRK06298 type III secretion sy 20.5 1.2E+03 0.026 25.9 17.4 12 347-358 293-304 (356)
171 TIGR01297 CDF cation diffusion 20.5 9.2E+02 0.02 24.6 21.3 35 267-301 222-258 (268)
172 PF14402 7TM_transglut: 7 tran 20.5 9.7E+02 0.021 26.3 10.8 25 147-171 190-218 (313)
173 COG2274 SunT ABC-type bacterio 20.4 1.6E+03 0.035 27.4 19.3 42 146-188 384-425 (709)
174 PF09926 DUF2158: Uncharacteri 20.3 97 0.0021 25.1 2.6 23 209-233 1-23 (53)
175 cd04466 S1_YloQ_GTPase S1_YloQ 20.0 1.8E+02 0.0039 23.4 4.3 31 207-239 36-66 (68)
No 1
>PRK10334 mechanosensitive channel MscS; Provisional
Probab=100.00 E-value=1.3e-43 Score=370.65 Aligned_cols=250 Identities=18% Similarity=0.247 Sum_probs=222.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHH
Q 006257 103 LLNFVRSLSTVLAFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLG 182 (653)
Q Consensus 103 ll~~l~siliIl~i~~~l~~li~~l~~~l~~~~~~~~~~~~~l~~i~~li~v~i~ii~iiviL~~lGv~i~~lLa~lGi~ 182 (653)
.++++.+++ +++++|++.+++..+.+.+..+.. .+.....++.+++++++++++++++|..+|++++++++++|++
T Consensus 28 ~~~i~~al~-il~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~l~~lGi~~~~l~a~~G~~ 103 (286)
T PRK10334 28 AVNIVAALA-IIIVGLIIARMISNAVNRLMISRK---IDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAA 103 (286)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 345555554 456788889998876554443322 1233456889999999999999999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHhhhhhhccCCccCCcEEEEeecCCCeEEEEEEEcceeeEEEEecCCcEEEEeccccccCcEEec
Q 006257 183 TVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNL 262 (653)
Q Consensus 183 glaiglA~qd~l~Nl~aGi~I~~~rPFrVGD~I~Iki~~~~~~G~VeeIgLrsTT~Irt~dg~~V~IPNs~L~s~~V~N~ 262 (653)
|+++|||+|++++|++||++|+++|||++||||++ ++.+|+|++|+||+ |++|++||+.++|||+.+.++.|+||
T Consensus 104 glaiG~a~q~~l~N~~sGi~i~~~rpf~vGD~I~i----~~~~G~V~~I~~r~-T~i~t~d~~~v~IPNs~~~~~~i~N~ 178 (286)
T PRK10334 104 GLAVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDL----GGVAGTVLSVQIFS-TTMRTADGKIIVIPNGKIIAGNIINF 178 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEE----CCEEEEEEEEEeEE-EEEEcCCCCEEEEcchHhcCCeeEEc
Confidence 99999999999999999999999999999999999 78999999999999 99999999999999999999999999
Q ss_pred cCCCceEEEEEEEeec-CCHHHHHHHHHHHHHHHHcCCCccccccceEEEEeecCCCCceEEEEEEEEEecCChHHHHHH
Q 006257 263 SQKSHWRIKTHLAISH-LDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCV 341 (653)
Q Consensus 263 Sr~~~~ri~v~l~I~y-td~eki~~l~e~L~e~L~s~p~v~~~~~~P~V~v~~~~~~~ssl~i~V~~~v~~~~~~~~~~v 341 (653)
|+.+.+|+.+.++++| +|++++++ .++++++++|.+..+| +|.|.+.++++ ++++++++||+++.+ |+.+
T Consensus 179 s~~~~rr~~~~v~V~y~~d~~~~~~---il~~~~~~~~~vl~~p-~p~v~~~~~~d--ssi~~~v~~wv~~~~---~~~~ 249 (286)
T PRK10334 179 SREPVRRNEFIIGVAYDSDIDQVKQ---ILTNIIQSEDRILKDR-EMTVRLNELGA--SSINFVVRVWSNSGD---LQNV 249 (286)
T ss_pred CCCCeEEEEEEEEecCCCCHHHHHH---HHHHHHHhCCceecCC-CCEEEEEeeeC--ceEEEEEEEEEecch---hHHH
Confidence 9988889999999999 78888887 6788899999999888 88999999997 899999999999764 5789
Q ss_pred HHHHHHHHHHHHHHCCCccCCCcEEEEEe
Q 006257 342 KEAILLDLLRVISHHRARLATPIRTVQKI 370 (653)
Q Consensus 342 r~~I~~~Il~~~~~~GIeia~P~qtV~~~ 370 (653)
+.+++++|+++|+++||++|||+|++++.
T Consensus 250 ~~~~~~~I~~~f~~~gI~ip~p~~~v~~~ 278 (286)
T PRK10334 250 YWDVLERIKREFDAAGISFPYPQMDVNFK 278 (286)
T ss_pred HHHHHHHHHHHHHHCCCcCCCCCeEEEec
Confidence 99999999999999999999999998854
No 2
>PRK11465 putative mechanosensitive channel protein; Provisional
Probab=100.00 E-value=2.4e-40 Score=378.28 Aligned_cols=289 Identities=12% Similarity=0.112 Sum_probs=226.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhc----CCc
Q 006257 64 HVMTSYIQPLMLWTGAILICRALDPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQ-AQKFFMETT----DSG 138 (653)
Q Consensus 64 ~il~sl~~PL~l~i~li~i~~al~~l~lp~~~~~~i~~~ll~~l~siliIl~i~~~l~~li~~-l~~~l~~~~----~~~ 138 (653)
.+++.++ |+.+++++++++.++..+.+..+........+...+..++++++++++++.+.+. +.+++.+.. ...
T Consensus 425 ~~l~~lr-~l~~~~~vl~ll~a~~~l~l~~~~~~~~g~~~i~~l~~i~iil~i~~v~w~l~~~~ie~~l~~~~~~~~~~~ 503 (741)
T PRK11465 425 AALKTAR-ILTVCVAVMLLLNAWGLFDFWNWLQNGAGEKTVDILIRIALILFFSAVGWTVLASLIENRLASDIHGRPLPS 503 (741)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHhcchHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhh
Confidence 4555555 8888888888888887555443211111222333333333344333333333332 223332221 111
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhccCCccCCcEEEEe
Q 006257 139 DARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTK 218 (653)
Q Consensus 139 ~~~~~~l~~i~~li~v~i~ii~iiviL~~lGv~i~~lLa~lGi~glaiglA~qd~l~Nl~aGi~I~~~rPFrVGD~I~Ik 218 (653)
....+..+++++++++++++++++++|+.+|++++++++++|++|+++|||+|++++||++|++|+++|||++||||++
T Consensus 504 ~r~~Tl~~ll~~~~~~~i~~i~~l~vL~~lGi~it~LlA~aGi~GlaiGfaaQ~~l~N~isGi~Il~e~pf~vGD~I~v- 582 (741)
T PRK11465 504 ARTRTLLTLFRNALAVIISTITIMIVLSEIGVNIAPLLAGAGALGLAISFGSQTLVKDIITGVFIQFENGMNTGDLVTI- 582 (741)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCEEEE-
Confidence 2245678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCeEEEEEEEcceeeEEEEecCCcEEEEeccccccCcEEeccCCCceEEEEEEEeec-CCHHHHHHHHHHHHHHHHc
Q 006257 219 IEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISH-LDVHKINSIVADMRKVLAK 297 (653)
Q Consensus 219 i~~~~~~G~VeeIgLrsTT~Irt~dg~~V~IPNs~L~s~~V~N~Sr~~~~ri~v~l~I~y-td~eki~~l~e~L~e~L~s 297 (653)
++++|+||+|++|+ |++|++||+.++|||+.+.+ |+|||+. ..++.++++|+| +|.++++++++++.+.+.+
T Consensus 583 ---~g~~GtVe~I~lRs-T~iRt~dg~~i~IPNs~i~~--v~N~Sr~-~~~~~v~v~V~Y~~Didka~~iL~ev~~el~~ 655 (741)
T PRK11465 583 ---GPLTGTVERMSIRS-VGVRQDTGAYHIIPWSSITT--FANFVRG-IGSVVANYDVDRHEDADKANQALKDAVAELME 655 (741)
T ss_pred ---CCeEEEEEEEeeeE-EEEEcCCCCEEEEECCccee--eEEeccC-ceEEEEEEEeCCCCCHHHHHHHHHHHHHHhhc
Confidence 78999999999999 99999999999999999974 9999985 667888999999 8999999998888888878
Q ss_pred CCCc----cccccceEEEEeecCCCCceEEEEEEEEEecCChHHHHHHHHHHHHHHHHHHHHCCCccCCCcEEEE
Q 006257 298 NPQV----EQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTVQ 368 (653)
Q Consensus 298 ~p~v----~~~~~~P~V~v~~~~~~~ssl~i~V~~~v~~~~~~~~~~vr~~I~~~Il~~~~~~GIeia~P~qtV~ 368 (653)
+|++ ..++ +.+.+.++++ +++++++++|+++. ++|.++++++++|+++|+++||++|+|+.++.
T Consensus 656 dpe~~~~il~~p--~~vgV~~lgd--Ssi~lrvr~~t~p~---~qw~v~rel~~~IK~~Fde~GIeIP~~tv~v~ 723 (741)
T PRK11465 656 NEEIRGLIIGEP--NFAGIVGLTN--TAFTLRVSFTTLPL---KQWTVRFALDSQVKKHFDLAGVRAPVQTYQVL 723 (741)
T ss_pred CccccccccCCC--CeEEEEEecC--ceEEEEEEEEECcc---hHHHHHHHHHHHHHHHHHHCCCCCCCCceEee
Confidence 8864 3333 3578889986 79999999999764 45889999999999999999999987766543
No 3
>PRK11281 hypothetical protein; Provisional
Probab=100.00 E-value=2.8e-39 Score=384.40 Aligned_cols=252 Identities=20% Similarity=0.207 Sum_probs=221.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHH
Q 006257 102 RLLNFVRSLSTVLAFAYCLSSLIQQAQKF-FMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGG 180 (653)
Q Consensus 102 ~ll~~l~siliIl~i~~~l~~li~~l~~~-l~~~~~~~~~~~~~l~~i~~li~v~i~ii~iiviL~~lGv~i~~lLa~lG 180 (653)
++.+++.+++ +++++|++.+++..+.+. ...+... +.....++.++++++++++++++++..+|++.+++.+.+|
T Consensus 835 tl~~Ll~all-Il~i~~~l~r~l~~ll~~~~~~rl~l---~~~~~~~i~~li~y~I~~i~iliaL~~lGi~~t~L~~l~g 910 (1113)
T PRK11281 835 TLGNLLFALI-ILVVTYVLVRNLPGLLEVLVLSRLNL---RQGTSYAITTLLTYIIIAVGAVTAFSTLGVSWDKLQWLVA 910 (1113)
T ss_pred eHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhccC---CchHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHH
Confidence 4555555554 556788888888875543 3333221 1223456889999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHhhhhhhccCCccCCcEEEEeecCCCeEEEEEEEcceeeEEEEecCCcEEEEeccccccCcEE
Q 006257 181 LGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVR 260 (653)
Q Consensus 181 i~glaiglA~qd~l~Nl~aGi~I~~~rPFrVGD~I~Iki~~~~~~G~VeeIgLrsTT~Irt~dg~~V~IPNs~L~s~~V~ 260 (653)
++|+++|||+|++++||+||++|+++|||++||+|++ ++..|+|++|++|+ |+||++||+.|+|||+.|.++.|+
T Consensus 911 aLgVgIGfglQ~ilsNfISGiiIl~eRPfrIGD~I~I----~~~~G~V~~I~lRs-T~Irt~D~~~ViIPNs~~~t~~Ii 985 (1113)
T PRK11281 911 ALSVGLGFGLQEIFANFVSGLIILFERPVRIGDTVTI----GTFSGTVSKIRIRA-TTITDFDRKEVIVPNKAFVTERLI 985 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCEEEE----CCEEEEEEEEEeEE-EEEEcCCCCEEEEechhhhcCceE
Confidence 9999999999999999999999999999999999999 78999999999999 999999999999999999999999
Q ss_pred eccCCC-ceEEEEEEEeec-CCHHHHHHHHHHHHHHHHcCCCccccccceEEEEeecCCCCceEEEEEEEEEecCChHHH
Q 006257 261 NLSQKS-HWRIKTHLAISH-LDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEY 338 (653)
Q Consensus 261 N~Sr~~-~~ri~v~l~I~y-td~eki~~l~e~L~e~L~s~p~v~~~~~~P~V~v~~~~~~~ssl~i~V~~~v~~~~~~~~ 338 (653)
|||..+ .+|+.+.|+|+| +|++++++ .+.+++.++|.+..+| +|.|++.+|++ ++++++++||+++. .++
T Consensus 986 N~S~~~~~~Rv~i~vgV~Y~sDi~~v~~---iL~eaa~~~p~Vl~~P-~P~V~~~~fgd--ssi~~~lr~wv~~~--~~~ 1057 (1113)
T PRK11281 986 NWSLSDTVTRVVIKVGVAYGSDLEKVRE---LLLQAATENPRVMKEP-EPQVFFLNFGA--STLDHELRLYVREL--GDR 1057 (1113)
T ss_pred eCCCCCcceEEEEEEEeCCCCCHHHHHH---HHHHHHHcCcccccCC-CCEEEEEeccC--ceEEEEEEEEEcCH--hhH
Confidence 999987 478999999999 88888777 6888999999999998 88999999996 89999999999864 578
Q ss_pred HHHHHHHHHHHHHHHHHCCCccCCCcEEEEEe
Q 006257 339 LCVKEAILLDLLRVISHHRARLATPIRTVQKI 370 (653)
Q Consensus 339 ~~vr~~I~~~Il~~~~~~GIeia~P~qtV~~~ 370 (653)
+.++++++.+|+++|+++||++|||.++|++.
T Consensus 1058 ~~v~s~L~~~I~~~f~e~GIeIpfPq~~V~i~ 1089 (1113)
T PRK11281 1058 SPTVDELNRRIDRLFRENDINIAFNQLDVFLK 1089 (1113)
T ss_pred HHHHHHHHHHHHHHHHHCCCcCCCCCeeEEec
Confidence 89999999999999999999999999999854
No 4
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=100.00 E-value=1.3e-38 Score=377.44 Aligned_cols=251 Identities=14% Similarity=0.144 Sum_probs=220.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Q 006257 103 LLNFVRSLSTVLAFAYCLSSLIQQAQ-KFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGL 181 (653)
Q Consensus 103 ll~~l~siliIl~i~~~l~~li~~l~-~~l~~~~~~~~~~~~~l~~i~~li~v~i~ii~iiviL~~lGv~i~~lLa~lGi 181 (653)
+.+++.+++ +++++|++.+.+..+. +++.++... +.....++.++++++++++++++++..+|++.+++.+.+|+
T Consensus 833 l~~ll~All-Iliv~~~l~r~l~~lle~~l~~~~~l---~~~~~~~i~~l~~y~I~~ig~l~~L~~lGI~~t~l~al~ga 908 (1109)
T PRK10929 833 LGSVLIAIL-VFIITTQLVRNLPALLELALLQHLDL---TPGTGYAITTITKYLLMLIGGLVGFSMIGIEWSKLQWLVAA 908 (1109)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCC---ChhHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 445555554 4566777788777744 444343221 22335678899999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHhhhhhhccCCccCCcEEEEeecCCCeEEEEEEEcceeeEEEEecCCcEEEEeccccccCcEEe
Q 006257 182 GTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRN 261 (653)
Q Consensus 182 ~glaiglA~qd~l~Nl~aGi~I~~~rPFrVGD~I~Iki~~~~~~G~VeeIgLrsTT~Irt~dg~~V~IPNs~L~s~~V~N 261 (653)
+|+++|||+|++++||+||++|+++|||++||||++ ++.+|+|++|++|+ |+|+++||+.|+|||+.|.++.|+|
T Consensus 909 lGVgIGfAlQ~ilsNfiSGIiIL~erPfrVGD~I~I----~~~~GtV~~I~lRs-T~Irt~Dg~~IiIPNs~~it~~IiN 983 (1109)
T PRK10929 909 LGVGLGFGLQEIFANFISGLIILFEKPIRIGDTVTI----RDLTGSVTKINTRA-TTISDWDRKEIIVPNKAFITEQFIN 983 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEE----CCEEEEEEEEeeeE-EEEEeCCCCEEEEEChhhhcCceEe
Confidence 999999999999999999999999999999999999 78999999999999 9999999999999999999999999
Q ss_pred ccCCCc-eEEEEEEEeec-CCHHHHHHHHHHHHHHHHcCCCccccccceEEEEeecCCCCceEEEEEEEEEecCChHHHH
Q 006257 262 LSQKSH-WRIKTHLAISH-LDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYL 339 (653)
Q Consensus 262 ~Sr~~~-~ri~v~l~I~y-td~eki~~l~e~L~e~L~s~p~v~~~~~~P~V~v~~~~~~~ssl~i~V~~~v~~~~~~~~~ 339 (653)
||+.+. +|+.+.|+|+| +|++++++ .+.+++.++|.+..+| +|.|++.+|++ +++.++++||++.. .+++
T Consensus 984 ~S~~d~~~Rv~i~VgV~Y~sDie~v~~---iL~eaa~~~~~VL~~P-~P~V~~~~fgd--ssi~~elr~wv~~~--~~~~ 1055 (1109)
T PRK10929 984 WSLSDSVTRVVLTIPAPADANSEEVTE---ILLTAARRCSLVLDNP-APEVFLVDLQQ--GIQIFELRIYAAEM--GHRM 1055 (1109)
T ss_pred cCCCCcceEEEEEEEeCCCCCHHHHHH---HHHHHHHhCccccCCC-CCEEEEEecCC--CceEEEEEEEEcCh--hhHH
Confidence 999875 79999999999 89888887 6778999999999888 88999999986 79999999999743 5689
Q ss_pred HHHHHHHHHHHHHHHHCCCccCCCcEEEEEe
Q 006257 340 CVKEAILLDLLRVISHHRARLATPIRTVQKI 370 (653)
Q Consensus 340 ~vr~~I~~~Il~~~~~~GIeia~P~qtV~~~ 370 (653)
.++++++.+|+++|+++||++|||.++|++.
T Consensus 1056 ~v~~el~~~I~~~F~~~GIeIPfPq~~v~i~ 1086 (1109)
T PRK10929 1056 PLRHEIHQLILAGFREHGIDMPFPPFQMRLE 1086 (1109)
T ss_pred HHHHHHHHHHHHHHHHCCCcCCCCCeEEEee
Confidence 9999999999999999999999999999965
No 5
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=4.7e-35 Score=332.73 Aligned_cols=250 Identities=18% Similarity=0.217 Sum_probs=220.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHH
Q 006257 104 LNFVRSLSTVLAFAYCLSSLIQQA-QKFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLG 182 (653)
Q Consensus 104 l~~l~siliIl~i~~~l~~li~~l-~~~l~~~~~~~~~~~~~l~~i~~li~v~i~ii~iiviL~~lGv~i~~lLa~lGi~ 182 (653)
..++.+++ +++++|++.|.+... ...+..+..-+..- -..+.+++.++++.+++++.++.+|+|.+++-..+|.+
T Consensus 559 ~~ll~avl-~~~~~~~l~r~~~~~L~~~vl~r~~~~~G~---r~~I~t~~~Y~~~~i~~l~~lS~~Gi~lssL~~~~gAL 634 (835)
T COG3264 559 GALLQAVL-LFLITYVLTRNLPGWLEVRVLQRLDLDAGT---RYSITTLLGYLLIAIGGLVGLSTLGIDLSSLQWLAGAL 634 (835)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcccCcch---HHHHHHHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHh
Confidence 34445444 455677778887774 44555554432221 24688999999999999999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHhhhhhhccCCccCCcEEEEeecCCCeEEEEEEEcceeeEEEEecCCcEEEEeccccccCcEEec
Q 006257 183 TVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNL 262 (653)
Q Consensus 183 glaiglA~qd~l~Nl~aGi~I~~~rPFrVGD~I~Iki~~~~~~G~VeeIgLrsTT~Irt~dg~~V~IPNs~L~s~~V~N~ 262 (653)
|+.+||++|++++||+||++|+++|||||||||++ |+++|+|.+|+.|+ |+|+++||..|+|||+.|.++.|.||
T Consensus 635 svGiGFGLQ~I~~NFVSGlIiL~ErpvkvGD~It~----g~~~G~V~~I~vRA-T~I~~fd~~~vIVPNs~fI~~qV~NW 709 (835)
T COG3264 635 SVGLGFGLQEIVSNFVSGLIILFERPVKVGDTVTI----GTVSGTVRKISVRA-TTIRTFDRKEVIVPNSAFITEQVINW 709 (835)
T ss_pred hhhhchhHHHHHHHhhhhhhhheecCcccCCEEEE----CCceEEEEEEEeeE-EEEEeCCCCeEEeccHHHHhhheeee
Confidence 99999999999999999999999999999999999 78999999999999 99999999999999999999999999
Q ss_pred cCCC-ceEEEEEEEeec-CCHHHHHHHHHHHHHHHHcCCCccccccceEEEEeecCCCCceEEEEEEEEEecCChHHHHH
Q 006257 263 SQKS-HWRIKTHLAISH-LDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLC 340 (653)
Q Consensus 263 Sr~~-~~ri~v~l~I~y-td~eki~~l~e~L~e~L~s~p~v~~~~~~P~V~v~~~~~~~ssl~i~V~~~v~~~~~~~~~~ 340 (653)
+.++ ..|+.+.|+++| +|++++++ .+.+..+.||.+.++| +|.|++.+|++ +++++++++|+...... ..
T Consensus 710 s~~~~~~R~~i~v~vay~sD~~~V~~---~Ll~~A~~~p~Vl~~P-~P~v~f~~fg~--s~L~fELr~~v~~~~~~--~~ 781 (835)
T COG3264 710 SLRDTTTRLVIPVGVAYGSDPELVRE---LLLEAAREHPRVLKDP-APEVFFTAFGA--SSLDFELRVYVAELGDR--MP 781 (835)
T ss_pred eccCceEEEEEEecccCCCCHHHHHH---HHHHHHHhCCCccCCC-CCeeEeecccc--cceeEEEEEEeeccccc--cc
Confidence 9988 689999999999 89999888 7999999999999999 89999999997 79999999999877443 34
Q ss_pred HHHHHHHHHHHHHHHCCCccCCCcEEEEEe
Q 006257 341 VKEAILLDLLRVISHHRARLATPIRTVQKI 370 (653)
Q Consensus 341 vr~~I~~~Il~~~~~~GIeia~P~qtV~~~ 370 (653)
++++++..|.+.|++|||++|||.+.+++-
T Consensus 782 ~~~~l~~~I~~~fre~gI~ipfpq~~v~l~ 811 (835)
T COG3264 782 VRSELNRAILDRFRENGIEIPFPQREVRLK 811 (835)
T ss_pred hHHHHHHHHHHHHHHcCCCCCCchHheEec
Confidence 999999999999999999999999998854
No 6
>PF00924 MS_channel: Mechanosensitive ion channel; InterPro: IPR006685 Mechanosensitive (MS) channels provide protection against hypo-osmotic shock, responding both to stretching of the cell membrane and to membrane depolarisation. They are present in the membranes of organisms from the three domains of life: bacteria, archaea, and eukarya []. There are two families of MS channels: large-conductance MS channels (MscL) and small-conductance MS channels (MscS or YGGB). The pressure threshold for MscS opening is 50% that of MscL []. The MscS family is much larger and more variable in size and sequence than the MscL family. Much of the diversity in MscS proteins occurs in the size of the transmembrane regions, which ranges from three to eleven transmembrane helices, although the three C-terminal helices are conserved. This family contains sequences form the MscS family of proteins. MscS folds as a homo-heptamer with a cylindrical shape, and can be divided into transmembrane and extramembrane regions: an N-terminal periplasmic region, a transmembrane region, and a C-terminal cytoplasmic region (middle and C-terminal domains). The transmembrane region forms a channel through the membrane that opens into a chamber enclosed by the extramembrane portion, the latter connecting to the cytoplasm through distinct portals [].; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 2OAU_E 2VV5_F.
Probab=100.00 E-value=6.3e-36 Score=295.96 Aligned_cols=203 Identities=25% Similarity=0.414 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhccCCccCCcEEEEeecCCCeEEEEE
Q 006257 150 KAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVE 229 (653)
Q Consensus 150 ~li~v~i~ii~iiviL~~lGv~i~~lLa~lGi~glaiglA~qd~l~Nl~aGi~I~~~rPFrVGD~I~Iki~~~~~~G~Ve 229 (653)
+++.++++++++++++..+|++...+++++|++|+++|||+|++++|+++|++|++++||++||||++ ++..|+|+
T Consensus 2 ~i~~~~~~~~~~~~~l~~~g~~~~~l~~~~g~~~~~i~f~~~~~~~n~~~gi~i~~~~pf~vGD~I~i----~~~~G~V~ 77 (206)
T PF00924_consen 2 KIIRIVIIIVGILIILSILGIDVSSLLASLGVLGLAIGFAFQDIISNFISGIIILFERPFKVGDRIEI----GGVEGRVE 77 (206)
T ss_dssp -HHHHHHHHHHHHHHHHCCT--SCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCC-SS-TT-EEES----SS-EEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccCCCEEEE----EEeehHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999 78999999
Q ss_pred EEcceeeEEEEecCCcEEEEeccccccCcEEeccC-CCceEEEEEEEeec-CCHHHHHHHHHHHHHHHHcCCCccccccc
Q 006257 230 HVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQ-KSHWRIKTHLAISH-LDVHKINSIVADMRKVLAKNPQVEQQRLH 307 (653)
Q Consensus 230 eIgLrsTT~Irt~dg~~V~IPNs~L~s~~V~N~Sr-~~~~ri~v~l~I~y-td~eki~~l~e~L~e~L~s~p~v~~~~~~ 307 (653)
+|+|++ |++|++||++++|||+.|.++.|.|+|+ .+.+++.+.+.++| +|+++++++.+.+.+.++++|.+...+ +
T Consensus 78 ~I~l~~-t~l~~~~g~~v~IPNs~l~~~~i~N~s~~~~~~~~~v~~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~ 155 (206)
T PF00924_consen 78 EIGLRS-TRLRTWDGEIVIIPNSKLISSPIVNYSRSSPYRRVVVEIPVDYDTDPEKIEELREKIEEALRSNPYIFKEP-E 155 (206)
T ss_dssp EE-SSE-EEEEETTS-EEEEEHHHHHCS-EEETTT-SSEEEEEEEEEE-TTS----HHHHHHHHHHHHHH-TTC-TTS--
T ss_pred hcCcce-eeeecCCCCEEEEEchheeeEEEEEeeccCCceeeeeeeeEecCCCchHHHHHHHHHHHHHhcCchhhcCC-C
Confidence 999999 9999999999999999999999999999 77899999999999 788999999999999999999988766 7
Q ss_pred eEEEEeecCCCCceEEEEEEEEEecCChHHHHHHHHHHHHHHHHHHHHCCCcc
Q 006257 308 RRVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARL 360 (653)
Q Consensus 308 P~V~v~~~~~~~ssl~i~V~~~v~~~~~~~~~~vr~~I~~~Il~~~~~~GIei 360 (653)
|.+.+..+++ .++.+.++||++..++.+++.+|++++.++++.|++|||+|
T Consensus 156 ~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~gI~~ 206 (206)
T PF00924_consen 156 PRVVVDEIGD--SSLEFRIRVYVKNQDPEKYWEIRSEIRKRILEILEEHGIEI 206 (206)
T ss_dssp EEEEEEEE-S--SSEEEEEEEEEEC---CCHHHHHHHHHHHHHHHHHHHT---
T ss_pred CeEEEccccC--CceEEEEEEEEEeCchhhHHHHHHHHHHHHHHHHHHccCCC
Confidence 7899999986 69999999999997788899999999999999999999986
No 7
>COG0668 MscS Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.2e-33 Score=294.92 Aligned_cols=211 Identities=22% Similarity=0.365 Sum_probs=193.3
Q ss_pred hHH-HHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhccCCccCCcEEEEeecCC
Q 006257 144 GFQ-FAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGY 222 (653)
Q Consensus 144 ~l~-~i~~li~v~i~ii~iiviL~~lGv~i~~lLa~lGi~glaiglA~qd~l~Nl~aGi~I~~~rPFrVGD~I~Iki~~~ 222 (653)
.+. ++.++.+++++++++++++..+|++++++++++|++|+++|||+|++++|+++|+++++++||++||||++ +
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~lla~~G~~glaigla~q~~~~n~~~Gi~il~~~~f~vGD~I~i----~ 157 (316)
T COG0668 82 TLSVFLSNLLRILILVVALLIVLSVLGVQVTSLLAGLGALGLAIGLALQDLLSNLIAGIFLLLERPFKVGDWIEI----G 157 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhHhheecCcCcCCEEEE----C
Confidence 344 78999999999999999999999999999999999999999999999999999999999999999999999 7
Q ss_pred -CeEEEEEEEcceeeEEEEecCCcEEEEeccccccCcEEeccCCCceEEEEEEEeec-CCHHHHHHHHHHHHHHHHcCCC
Q 006257 223 -EVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISH-LDVHKINSIVADMRKVLAKNPQ 300 (653)
Q Consensus 223 -~~~G~VeeIgLrsTT~Irt~dg~~V~IPNs~L~s~~V~N~Sr~~~~ri~v~l~I~y-td~eki~~l~e~L~e~L~s~p~ 300 (653)
++.|+|++|++++ |++|++||++++|||+.+.++.|.||++...+|+.+.+.++| +|.++++++ +++++...+.
T Consensus 158 ~~~~G~V~~i~~~~-T~ir~~dg~~v~iPNs~i~~~~i~N~s~~~~~~~~~~v~v~~~~~~~~~~~i---~~~~~~~~~~ 233 (316)
T COG0668 158 SGVEGTVEDIGLRS-TTIRTLDGRIVTIPNSKLFTANVVNYSREPGRRVEVKVGVAYDSDLEKALKI---LKEVLEELPE 233 (316)
T ss_pred CCceEEEEEEEEEE-EEEEcCCCCEEEccchhhccCceEeCCCCCcEEEEEEEeeccCCCHHHHHHH---HHHHHHhccc
Confidence 6999999999999 999999999999999999999999999998889999999999 888888885 4455555555
Q ss_pred cc-ccccceEEEEeecCCCCceEEEEEEEEEecCChHHHHHHHHHHHHHHHHHHHHCCCccCCCcEEEE
Q 006257 301 VE-QQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTVQ 368 (653)
Q Consensus 301 v~-~~~~~P~V~v~~~~~~~ssl~i~V~~~v~~~~~~~~~~vr~~I~~~Il~~~~~~GIeia~P~qtV~ 368 (653)
.. .++ +|.+.+.++++ +++.+.+++|++..+ ++..+++++..+++.++++||+++||++.+.
T Consensus 234 ~~~~~~-~~~v~~~~~~~--~~~~i~v~~~t~~~~---~~~~~~~~~~~i~~~~~~~gi~i~~p~~~~~ 296 (316)
T COG0668 234 VLKIEP-EPVIGVSELGD--SGINIRVRFWTNPED---LWSVQRELNLRIKEALEEAGIEIPYPQQSVL 296 (316)
T ss_pred ccccCC-CcEEEEeeccC--CceEEEEEEEecchh---HHHHHHHHHHHHHHHHHHcCCCCCCCCeeEE
Confidence 54 355 67899999996 799999999998865 6899999999999999999999999999977
No 8
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]
Probab=99.77 E-value=2.8e-18 Score=196.21 Aligned_cols=219 Identities=16% Similarity=0.193 Sum_probs=191.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhhHHHHHHHhh-hhhhccCCccCCcEEEEeecC
Q 006257 143 MGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSS-AMIHATRPFVLNEWIQTKIEG 221 (653)
Q Consensus 143 ~~l~~i~~li~v~i~ii~iiviL~~lGv~i~~lLa~lGi~glaiglA~qd~l~Nl~aG-i~I~~~rPFrVGD~I~Iki~~ 221 (653)
..+.-+.+++.+++.++++++.+-.+|++...+++..+-.-+++.|.+.+++++++.+ |++++.+||.+||+|.|
T Consensus 478 taV~kL~~il~~Iv~vv~~~i~lil~~i~~~~~l~~~~sq~v~l~fif~~~~k~~~esiIFlfv~HPyDvGDRv~V---- 553 (714)
T KOG4629|consen 478 TAVNKLDRILNFIVAVVLLVIWLILLGINTSKLLLVISSQLVGLAFIFGNIVKELLESIIFLFVMHPYDVGDRVVV---- 553 (714)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccceeeeeeecccceeeeeehhhHHHHHHHHHhheeecCCCCCCCeEEE----
Confidence 4466777788888888888888889999999999988877888999999999999986 45678899999999999
Q ss_pred CCeEEEEEEEcceeeEEEEecCCcEEEEeccccccCcEEeccCCCceEEEEEEEeec-CCHHHHHHHHHHHHHHHHcCCC
Q 006257 222 YEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISH-LDVHKINSIVADMRKVLAKNPQ 300 (653)
Q Consensus 222 ~~~~G~VeeIgLrsTT~Irt~dg~~V~IPNs~L~s~~V~N~Sr~~~~ri~v~l~I~y-td~eki~~l~e~L~e~L~s~p~ 300 (653)
+++.-.|++++|++ |.+..+||+.+++||+.|.+..|.|+.|++.+...+++.+.. ++.+++.++.+.+.+++++.|+
T Consensus 554 Dg~~~vVeemnLls-TvF~~~dg~kI~~PNS~L~~k~I~N~rRS~~~~~~v~f~i~~~T~~~Ki~~Lk~rI~~ylks~~~ 632 (714)
T KOG4629|consen 554 DGVNLVVEEMNLLS-TVFLRVDGRKIFIPNSVLWTKAISNYRRSPDMGDEVEFLISSSTPFEKIERLKERIAEYLKSSPD 632 (714)
T ss_pred eceEEEEEEeccce-EEEEEECCeEEEeecHHHHhhhhhhhhcCccccccEEEEecCCCCHHHHHHHHHHHHHHHhcCcc
Confidence 56889999999999 999999999999999999999999999999988999999999 8999999999999999999999
Q ss_pred ccccccceEEEEeecCCCCc-eEEEEEEEEEecCChHHHHHHHHHHHHHHHHHHHHCCCccCCCcEEEE
Q 006257 301 VEQQRLHRRVFLDNINPENQ-ALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTVQ 368 (653)
Q Consensus 301 v~~~~~~P~V~v~~~~~~~s-sl~i~V~~~v~~~~~~~~~~vr~~I~~~Il~~~~~~GIeia~P~qtV~ 368 (653)
.+.. .+.+.+.++.+.+. .+.+.+.++.+.++..+++..|.++..++.+.+++.+|++-++++.+.
T Consensus 633 ~~~p--~~~~~i~~~e~~n~v~i~v~~~h~~n~Qd~~~~~~Rr~~~~~~l~~~~~eLdI~y~l~p~~in 699 (714)
T KOG4629|consen 633 DYYP--DLMVVIEEIEDLNSVKICVVVQHKINFQDMKERWSRRTEFVSALTKIMRELDIEYTLYPLDIN 699 (714)
T ss_pred cccc--chhhHHHhhhhcCcceEEEEEEeecchhhHHHHHhhHHHHHHHHHHHHHHcCcceeecCcchh
Confidence 8833 23577777776443 566677778888899999999999999999999999999966655544
No 9
>PRK10263 DNA translocase FtsK; Provisional
Probab=90.42 E-value=4.9 Score=50.78 Aligned_cols=25 Identities=4% Similarity=0.029 Sum_probs=10.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHH
Q 006257 18 SPQALKLVPGIAIIVFATWGLGPLM 42 (653)
Q Consensus 18 ~p~~l~llial~ill~a~~ll~~Ll 42 (653)
.....+.+.-++.++++++.+..++
T Consensus 15 ~~~~~rrL~E~~gIlLlllAlfL~l 39 (1355)
T PRK10263 15 KLSSGRRLLEALLILIVLFAVWLMA 39 (1355)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444555444444333333
No 10
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=86.10 E-value=54 Score=35.36 Aligned_cols=33 Identities=18% Similarity=0.328 Sum_probs=26.2
Q ss_pred ceEEEEEEEeec-CCHHHHHHHHHHHHHHHHcCC
Q 006257 267 HWRIKTHLAISH-LDVHKINSIVADMRKVLAKNP 299 (653)
Q Consensus 267 ~~ri~v~l~I~y-td~eki~~l~e~L~e~L~s~p 299 (653)
...+++.+.++. -+.++..++.+.+.+.+++..
T Consensus 244 ~~~id~~i~v~~~ls~~eah~I~~~ie~~i~~~~ 277 (304)
T COG0053 244 RIFIDVHIEVDPDLSLEEAHEIADEVEKRIKKEF 277 (304)
T ss_pred eEEEEEEEEECCCCChHHHHHHHHHHHHHHHHhc
Confidence 445678888887 688999999999999887654
No 11
>PRK12438 hypothetical protein; Provisional
Probab=83.76 E-value=64 Score=40.25 Aligned_cols=13 Identities=15% Similarity=0.718 Sum_probs=8.1
Q ss_pred ccCCccCC-cEEEE
Q 006257 205 ATRPFVLN-EWIQT 217 (653)
Q Consensus 205 ~~rPFrVG-D~I~I 217 (653)
..+.|.+. |.|+.
T Consensus 332 TR~AYgL~~d~v~~ 345 (991)
T PRK12438 332 TRQAYGIGGDWVQY 345 (991)
T ss_pred HHHHhCCCccceEE
Confidence 33477774 67764
No 12
>PF03699 UPF0182: Uncharacterised protein family (UPF0182); InterPro: IPR005372 This family contains uncharacterised integral membrane proteins.; GO: 0016021 integral to membrane
Probab=83.04 E-value=93 Score=37.97 Aligned_cols=25 Identities=8% Similarity=0.092 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCch
Q 006257 148 AGKAVYSAVWVASASLFMELLGFST 172 (653)
Q Consensus 148 i~~li~v~i~ii~iiviL~~lGv~i 172 (653)
...++.++..++++++++..+--+.
T Consensus 247 ~~~il~~i~~~~A~~~~~~~~~~~~ 271 (774)
T PF03699_consen 247 AYTILAVIALLCAVLFFINIFRRNW 271 (774)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3445555555566666666553343
No 13
>PRK00068 hypothetical protein; Validated
Probab=82.96 E-value=61 Score=40.35 Aligned_cols=19 Identities=5% Similarity=0.209 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 006257 150 KAVYSAVWVASASLFMELL 168 (653)
Q Consensus 150 ~li~v~i~ii~iiviL~~l 168 (653)
.++.++.+++++++++..+
T Consensus 261 ~iL~~ia~i~a~~~~~~~~ 279 (970)
T PRK00068 261 LILLVIAVICAIAVFSSIV 279 (970)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 14
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=80.18 E-value=98 Score=37.43 Aligned_cols=39 Identities=18% Similarity=0.042 Sum_probs=23.9
Q ss_pred HHHHHHhCCchHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 006257 162 SLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSS 200 (653)
Q Consensus 162 iviL~~lGv~i~~lLa~lGi~glaiglA~qd~l~Nl~aG 200 (653)
+.+|...+..++.+..+..++-+++++.++..+.+..--
T Consensus 285 l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~ 323 (709)
T COG2274 285 LAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRK 323 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555566666677788888877776533
No 15
>PRK11281 hypothetical protein; Provisional
Probab=79.40 E-value=76 Score=40.28 Aligned_cols=19 Identities=11% Similarity=0.055 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 006257 147 FAGKAVYSAVWVASASLFM 165 (653)
Q Consensus 147 ~i~~li~v~i~ii~iiviL 165 (653)
.+++-++.++|++..++++
T Consensus 618 ~~~~~~~~~~~~~~pl~~~ 636 (1113)
T PRK11281 618 HFRRQIVRLSLALLPLLFW 636 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333
No 16
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=78.68 E-value=31 Score=37.47 Aligned_cols=11 Identities=18% Similarity=0.329 Sum_probs=7.5
Q ss_pred EEEEecccccc
Q 006257 246 AVHIPNHKFTV 256 (653)
Q Consensus 246 ~V~IPNs~L~s 256 (653)
.++||+-.+.+
T Consensus 187 ~iiiP~FVL~E 197 (356)
T COG4956 187 TIIIPQFVLLE 197 (356)
T ss_pred eEeeeHHHHHH
Confidence 46788877644
No 17
>PRK11465 putative mechanosensitive channel protein; Provisional
Probab=77.96 E-value=1.3e+02 Score=36.70 Aligned_cols=25 Identities=16% Similarity=0.118 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Q 006257 145 FQFAGKAVYSAVWVASASLFMELLG 169 (653)
Q Consensus 145 l~~i~~li~v~i~ii~iiviL~~lG 169 (653)
.+.+.++++.+++++.++.++..+|
T Consensus 423 ~~~~l~~lr~l~~~~~vl~ll~a~~ 447 (741)
T PRK11465 423 LSAALKTARILTVCVAVMLLLNAWG 447 (741)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666665555555555555555
No 18
>TIGR01654 bact_immun_7tm bacteriocin-associated integral membrane (putative immunity) protein. This model represents a family of integral membrane proteins, most of which are about 650 residues in size and predicted to span the membrane seven times. Nearly half of the members of this family are found in association with a member of the lactococcin 972 family of bacteriocins (TIGR01653). Others may be associated with uncharacterized proteins that may also act as bacteriocins. Although this protein is suggested to be an immunity protein, and the bacteriocin is suggested to be exported by a Sec-dependent process, the role of this protein is unclear.
Probab=75.04 E-value=1.5e+02 Score=35.46 Aligned_cols=9 Identities=44% Similarity=0.497 Sum_probs=4.2
Q ss_pred HHHcCCCcc
Q 006257 294 VLAKNPQVE 302 (653)
Q Consensus 294 ~L~s~p~v~ 302 (653)
+|+.+|-..
T Consensus 404 YL~~~~i~~ 412 (679)
T TIGR01654 404 YLSKFPIVS 412 (679)
T ss_pred HHHhCCCcC
Confidence 344555443
No 19
>PRK10334 mechanosensitive channel MscS; Provisional
Probab=71.64 E-value=1e+02 Score=32.93 Aligned_cols=21 Identities=0% Similarity=-0.040 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHcCCCccccc
Q 006257 285 NSIVADMRKVLAKNPQVEQQR 305 (653)
Q Consensus 285 ~~l~e~L~e~L~s~p~v~~~~ 305 (653)
.++.+.+++.++++.--..-|
T Consensus 251 ~~~~~~I~~~f~~~gI~ip~p 271 (286)
T PRK10334 251 WDVLERIKREFDAAGISFPYP 271 (286)
T ss_pred HHHHHHHHHHHHHCCCcCCCC
Confidence 344556666666654433333
No 20
>PRK10263 DNA translocase FtsK; Provisional
Probab=70.09 E-value=1e+02 Score=39.63 Aligned_cols=29 Identities=24% Similarity=0.504 Sum_probs=12.6
Q ss_pred HhcCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 006257 14 ALQCSPQALKLVPGIAIIVFATWGLGPLMR 43 (653)
Q Consensus 14 ~l~~~p~~l~llial~ill~a~~ll~~Llr 43 (653)
.+..+..+..++..+ +++++++++.-|+.
T Consensus 15 ~~~~~rrL~E~~gIl-LlllAlfL~lALiS 43 (1355)
T PRK10263 15 KLSSGRRLLEALLIL-IVLFAVWLMAALLS 43 (1355)
T ss_pred ccchhHHHHHHHHHH-HHHHHHHHHHHHHh
Confidence 344444544444433 33333444444444
No 21
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=69.83 E-value=2.7e+02 Score=34.25 Aligned_cols=29 Identities=24% Similarity=0.127 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHCCCccCCCcEEEEEee
Q 006257 343 EAILLDLLRVISHHRARLATPIRTVQKIF 371 (653)
Q Consensus 343 ~~I~~~Il~~~~~~GIeia~P~qtV~~~~ 371 (653)
+.+.+-++++.++|---+.-|.-.|....
T Consensus 731 ~~V~~~Ll~~A~~~p~Vl~~P~P~v~f~~ 759 (835)
T COG3264 731 ELVRELLLEAAREHPRVLKDPAPEVFFTA 759 (835)
T ss_pred HHHHHHHHHHHHhCCCccCCCCCeeEeec
Confidence 34555778888888877776666655443
No 22
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=69.75 E-value=2.4e+02 Score=34.35 Aligned_cols=75 Identities=7% Similarity=-0.062 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCccccchhHHHHHHHHHHHHH----HHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Q 006257 115 AFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVW----VASASLFMELLGFSTQKWLTAGGLGTVLLTLA 189 (653)
Q Consensus 115 ~i~~~l~~li~~l~~~l~~~~~~~~~~~~~l~~i~~li~v~i~----ii~iiviL~~lGv~i~~lLa~lGi~glaiglA 189 (653)
.++..+...++...++..++......++.....+++...-+++ .+++++.|...+++.-.-++.+-..|++++++
T Consensus 259 lIgiGidy~vh~~nr~~ee~~~~~~~~eAv~~ai~~~g~avl~a~lTT~~GF~Sl~~s~i~~i~~~Gi~~siGi~la~l 337 (727)
T COG1033 259 LIGIGIDYGVHFHNRYEEERRKGRTVEEAVVEAIKHTGPAVLIAALTTAAGFLSLLTSSIPAIKEFGILLSIGIILAFL 337 (727)
T ss_pred HhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555566665554433333333334443332222 22223333344555544444444445555443
No 23
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=68.10 E-value=17 Score=33.61 Aligned_cols=37 Identities=5% Similarity=-0.097 Sum_probs=29.1
Q ss_pred ccCCcEEEEeecCCCeEEEEEEEcceeeEEEEecCCcEEEE
Q 006257 209 FVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHI 249 (653)
Q Consensus 209 FrVGD~I~Iki~~~~~~G~VeeIgLrsTT~Irt~dg~~V~I 249 (653)
.++||+|.. .||..|+|.+|+=-+ ..++..+|..+.+
T Consensus 39 Lk~GD~VvT---~gGi~G~V~~I~d~~-v~leia~gv~i~~ 75 (109)
T PRK05886 39 LQPGDRVHT---TSGLQATIVGITDDT-VDLEIAPGVVTTW 75 (109)
T ss_pred cCCCCEEEE---CCCeEEEEEEEeCCE-EEEEECCCeEEEE
Confidence 689999998 478999999998655 7777666655544
No 24
>PRK02509 hypothetical protein; Provisional
Probab=67.34 E-value=3.3e+02 Score=34.17 Aligned_cols=19 Identities=5% Similarity=-0.145 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 006257 148 AGKAVYSAVWVASASLFME 166 (653)
Q Consensus 148 i~~li~v~i~ii~iiviL~ 166 (653)
+..++.++..+++++++..
T Consensus 329 ~~~iL~~ia~l~A~~~~~~ 347 (973)
T PRK02509 329 VYTILSILAGIIAFWLLWR 347 (973)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444455544444
No 25
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=67.13 E-value=2.9e+02 Score=34.04 Aligned_cols=15 Identities=13% Similarity=0.297 Sum_probs=8.6
Q ss_pred cCCCCCCCchhhhHh
Q 006257 603 IEEGMPSSQPVVKEL 617 (653)
Q Consensus 603 ~~~~~~~~~~~~~~~ 617 (653)
-|+||....+|+++|
T Consensus 778 ~~~~~~~~~~~~~~~ 792 (810)
T TIGR00844 778 SEDEMADDEAESENM 792 (810)
T ss_pred cchhhccchhccccc
Confidence 455665556666554
No 26
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=66.87 E-value=2e+02 Score=31.47 Aligned_cols=61 Identities=13% Similarity=0.135 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCccccchhHHHHHHHHHHHHHHHHH-HHHHHHhCCchHHHHH
Q 006257 111 STVLAFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASA-SLFMELLGFSTQKWLT 177 (653)
Q Consensus 111 liIl~i~~~l~~li~~l~~~l~~~~~~~~~~~~~l~~i~~li~v~i~ii~i-iviL~~lGv~i~~lLa 177 (653)
+..+.++|+..++.+........ . .......++.+...++.++-+ ++++..+|+--+++..
T Consensus 165 i~~~~l~~~~~~l~~~~~~~~~~--~----~~~~~~~~~~l~~~~li~~Pl~li~la~~GY~yTA~~L 226 (340)
T PF12794_consen 165 ILLLLLAVFLWRLLRPGWGLYQP--K----PDSWIHRLRYLWWPLLILAPLALIVLALLGYYYTALQL 226 (340)
T ss_pred HHHHHHHHHHHHHHccccccccC--C----CcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 33444566666666543222221 1 111234466666665555444 3445567777554433
No 27
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=66.69 E-value=3.4e+02 Score=34.68 Aligned_cols=16 Identities=19% Similarity=0.609 Sum_probs=8.3
Q ss_pred ccccchhhHHHHHHHH
Q 006257 55 NSWKKSKTHHVMTSYI 70 (653)
Q Consensus 55 ~~w~~~~~~~il~sl~ 70 (653)
..|.+.....+.+.+.
T Consensus 588 F~w~~~~v~~~~~~~~ 603 (1109)
T PRK10929 588 FGWPRERVARAMRYYL 603 (1109)
T ss_pred cCCCHHHHHHHHHHHH
Confidence 4677755544444333
No 28
>PF04791 LMBR1: LMBR1-like membrane protein; InterPro: IPR006876 This group of uncharacterised proteins have a conserved C-terminal region which is found in LMBR1 and in the lipocalin-1 receptor. LMBR1 was thought to play a role in preaxial polydactyly, but recent evidence now suggests this not to be the case [].
Probab=65.13 E-value=1.6e+02 Score=33.26 Aligned_cols=11 Identities=9% Similarity=0.452 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 006257 147 FAGKAVYSAVW 157 (653)
Q Consensus 147 ~i~~li~v~i~ 157 (653)
+..++..++++
T Consensus 119 l~~n~~~~~~~ 129 (471)
T PF04791_consen 119 LKENLIYYLIF 129 (471)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 29
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=64.44 E-value=19 Score=33.11 Aligned_cols=39 Identities=18% Similarity=0.160 Sum_probs=31.2
Q ss_pred ccCCcEEEEeecCCCeEEEEEEEcceeeEEEEecCCcEEEEec
Q 006257 209 FVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPN 251 (653)
Q Consensus 209 FrVGD~I~Iki~~~~~~G~VeeIgLrsTT~Irt~dg~~V~IPN 251 (653)
.++||+|.. .+|..|+|.+|+=-. ..++..+|..+.+=-
T Consensus 53 Lk~Gd~VvT---~gGi~G~Vv~i~~~~-v~lei~~g~~i~~~r 91 (106)
T PRK05585 53 LAKGDEVVT---NGGIIGKVTKVSEDF-VIIELNDDTEIKIQK 91 (106)
T ss_pred cCCCCEEEE---CCCeEEEEEEEeCCE-EEEEECCCeEEEEEh
Confidence 689999987 478999999998765 888888886665533
No 30
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=64.32 E-value=2.2e+02 Score=31.11 Aligned_cols=42 Identities=14% Similarity=0.166 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHH
Q 006257 145 FQFAGKAVYSAVWVASASLFMELLGF--STQKWLTAGGLGTVLL 186 (653)
Q Consensus 145 l~~i~~li~v~i~ii~iiviL~~lGv--~i~~lLa~lGi~glai 186 (653)
...+++.++.+++++..+++...+.. +....--++|-+++.+
T Consensus 122 ~~~~r~~l~~~~~~~~pl~~~~~~~~~~~~~~~~d~LGrl~~ii 165 (340)
T PF12794_consen 122 VQRLRRQLRWLIWVLVPLLFISIFAENLPDGLARDVLGRLAFII 165 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhhHHHHHHHH
Confidence 55677777777777777666665543 3333333444444444
No 31
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=64.09 E-value=76 Score=33.87 Aligned_cols=7 Identities=43% Similarity=0.358 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 006257 176 LTAGGLG 182 (653)
Q Consensus 176 La~lGi~ 182 (653)
++++|++
T Consensus 279 ~~~~gi~ 285 (333)
T PF03176_consen 279 LAAIGIL 285 (333)
T ss_pred HHHHHHH
Confidence 3333333
No 32
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=63.74 E-value=22 Score=31.27 Aligned_cols=37 Identities=14% Similarity=0.139 Sum_probs=29.7
Q ss_pred ccCCcEEEEeecCCCeEEEEEEEcceeeEEEEecCCcEEEE
Q 006257 209 FVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHI 249 (653)
Q Consensus 209 FrVGD~I~Iki~~~~~~G~VeeIgLrsTT~Irt~dg~~V~I 249 (653)
.++||+|.. .+|..|+|.+|+=-+ ..++..+|..+.+
T Consensus 38 L~~Gd~VvT---~gGi~G~V~~i~d~~-v~vei~~g~~i~~ 74 (84)
T TIGR00739 38 LKKGDKVLT---IGGIIGTVTKIAENT-IVIELNDNTEITF 74 (84)
T ss_pred CCCCCEEEE---CCCeEEEEEEEeCCE-EEEEECCCeEEEE
Confidence 689999998 478999999998766 7777777765554
No 33
>PF11449 DUF2899: Protein of unknown function (DUF2899); InterPro: IPR021552 This is a bacterial family of uncharacterised proteins.
Probab=61.02 E-value=1.2e+02 Score=32.96 Aligned_cols=43 Identities=23% Similarity=0.321 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH----HhCCchHHHHHHHHHHHHHH
Q 006257 144 GFQFAGKAVYSAVWVASASLFME----LLGFSTQKWLTAGGLGTVLL 186 (653)
Q Consensus 144 ~l~~i~~li~v~i~ii~iiviL~----~lGv~i~~lLa~lGi~glai 186 (653)
..+.+....++++|++++.+++. ..|.++..++...++.+..+
T Consensus 178 ~~~a~~hT~~I~~~v~~~~l~~~~~i~~~G~dl~~~l~~~~~~~pli 224 (298)
T PF11449_consen 178 LQKALQHTLFIFVWVFVAFLALELVIEFIGEDLAALLSGNGILQPLI 224 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHhCchHHHHH
Confidence 45667788888899888877665 45888888877666654443
No 34
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=59.25 E-value=3.9e+02 Score=32.25 Aligned_cols=20 Identities=25% Similarity=0.316 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHhhHHHHHHH
Q 006257 179 GGLGTVLLTLAGREIFTNFL 198 (653)
Q Consensus 179 lGi~glaiglA~qd~l~Nl~ 198 (653)
.|++..++++|+-..+.-+|
T Consensus 442 sGl~s~il~iGllP~fE~~F 461 (700)
T COG1480 442 SGLLSGILVLGLLPYFEALF 461 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34444445555545444444
No 35
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=58.14 E-value=4.4e+02 Score=32.52 Aligned_cols=29 Identities=7% Similarity=-0.121 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006257 23 KLVPGIAIIVFATWGLGPLMRQSRNLLLR 51 (653)
Q Consensus 23 ~llial~ill~a~~ll~~Llr~i~~~l~~ 51 (653)
.+++.+++-++++++++++..++++++.+
T Consensus 207 ~~L~~i~~GiliG~vvG~l~~~Ll~~l~r 235 (810)
T TIGR00844 207 TILWECIFGSILGCIIGYCGRKAIRFAEG 235 (810)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555566666677777776665544
No 36
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=55.29 E-value=38 Score=30.71 Aligned_cols=40 Identities=18% Similarity=0.104 Sum_probs=30.6
Q ss_pred ccCCcEEEEeecCCCeEEEEEEEcceeeEEEEecCCcEEEEecc
Q 006257 209 FVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNH 252 (653)
Q Consensus 209 FrVGD~I~Iki~~~~~~G~VeeIgLrsTT~Irt~dg~~V~IPNs 252 (653)
.+.||.|.. .||..|+|.+|+=.. ..|...+|..+.+=-+
T Consensus 44 L~kGD~VvT---~gGi~G~V~~v~d~~-v~I~l~~~~~i~~~k~ 83 (97)
T COG1862 44 LKKGDEVVT---IGGIVGTVTKVGDDT-VEIELGDGTKIKFEKE 83 (97)
T ss_pred ccCCCEEEE---cCCeEEEEEEEecCc-EEEEECCCeEEEEEHH
Confidence 589999987 478999999999876 6666667766665433
No 37
>PF15420 Abhydrolase_9_N: Alpha/beta-hydrolase family N-terminus
Probab=55.13 E-value=2.5e+02 Score=28.76 Aligned_cols=38 Identities=24% Similarity=0.156 Sum_probs=24.6
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006257 15 LQCSPQALKLVPGIAIIVFATWGLGPLMRQSRNLLLRKS 53 (653)
Q Consensus 15 l~~~p~~l~llial~ill~a~~ll~~Llr~i~~~l~~r~ 53 (653)
|-+.+.+.|-++ .++..++.++++-+.+++.+++..+.
T Consensus 5 LlPR~w~~Qgv~-~Gi~~a~GY~~Gv~~~~l~r~~~~~~ 42 (208)
T PF15420_consen 5 LLPRPWLFQGVV-SGISAAIGYGLGVFLRWLWRRLGLPR 42 (208)
T ss_pred cCCCcHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 345666665544 45556667788888888877765543
No 38
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=54.81 E-value=3.4e+02 Score=30.12 Aligned_cols=17 Identities=6% Similarity=0.124 Sum_probs=7.9
Q ss_pred HHHHHHHhcCChhHHHH
Q 006257 8 FTKSYNALQCSPQALKL 24 (653)
Q Consensus 8 l~~~~~~l~~~p~~l~l 24 (653)
+.++...+..-|-+.+.
T Consensus 145 l~~YlKk~l~Dp~~~~~ 161 (344)
T PF04123_consen 145 LGRYLKKALSDPEYRRT 161 (344)
T ss_pred HHHHHHHhhcChhhhce
Confidence 34444444555554443
No 39
>PRK05415 hypothetical protein; Provisional
Probab=54.36 E-value=3.4e+02 Score=30.06 Aligned_cols=62 Identities=11% Similarity=0.048 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCccccchhHHHHHHHHHHHHHH----HHHHHHHHHhCCchHHHHH
Q 006257 112 TVLAFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWV----ASASLFMELLGFSTQKWLT 177 (653)
Q Consensus 112 iIl~i~~~l~~li~~l~~~l~~~~~~~~~~~~~l~~i~~li~v~i~i----i~iiviL~~lGv~i~~lLa 177 (653)
=++.++|.-.++++.+.+.|.-+.... ..+++++.++.-++++ ++.-+.++.+|.++...+.
T Consensus 226 D~l~v~~~n~rmI~~ia~lYG~~lg~~----~~~rL~r~V~~~la~~G~~e~~~~l~~~~l~~~l~~~ls 291 (341)
T PRK05415 226 DMAFIAWRNLRLIRRIAELYGIELGYL----SRIRLFRLVLANIAFAGASELVDDLGMDWLSQDLAAKLS 291 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCchH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 344567778888888777775443321 1234454444444333 2223345566666554433
No 40
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=53.65 E-value=4.4e+02 Score=32.75 Aligned_cols=26 Identities=27% Similarity=0.221 Sum_probs=9.9
Q ss_pred HHHHHhCCchHHHHHHHHHHHHHHHH
Q 006257 163 LFMELLGFSTQKWLTAGGLGTVLLTL 188 (653)
Q Consensus 163 viL~~lGv~i~~lLa~lGi~glaigl 188 (653)
..|...++..-.-++....+|+++++
T Consensus 293 ~~l~~~~~~~~~~~Gi~~a~gvl~a~ 318 (910)
T TIGR00833 293 LALSLARLPSFKTLGVSCAVGVLVAL 318 (910)
T ss_pred HHHHHccChHHHHHHHHHHHHHHHHH
Confidence 33334454433333333333444433
No 41
>PF05552 TM_helix: Conserved TM helix; InterPro: IPR008910 This alignment represents a conserved transmembrane helix as well as some flanking sequence. It is often found in association with a Mechanosensitive (MS) channel IPR006685 from INTERPRO.; PDB: 2VV5_F 2OAU_E.
Probab=53.63 E-value=24 Score=28.00 Aligned_cols=35 Identities=14% Similarity=0.314 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006257 100 KQRLLNFVRSLSTVLAFAYCLSSLIQQAQKFFMETT 135 (653)
Q Consensus 100 ~~~ll~~l~siliIl~i~~~l~~li~~l~~~l~~~~ 135 (653)
..++++++.+++ +++++|++.++++.+.+...++.
T Consensus 12 i~~lP~iv~Ail-Il~vG~~va~~v~~~~~~~l~~~ 46 (53)
T PF05552_consen 12 IAYLPNIVGAIL-ILIVGWWVAKFVRKLVRRLLEKR 46 (53)
T ss_dssp -GGHCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHc
Confidence 355667776665 55678999999988666555554
No 42
>PF07331 TctB: Tripartite tricarboxylate transporter TctB family; InterPro: IPR009936 This entry contains bacterial proteins of around 150 residues in length, which have 4 transmembrane domains. Some of the sequences in the entry are annotated as the TctB subunit of the tripartite tricarboxylate transport(TTT) family. However there is no direct evidence to support this annotation as characterised members of this family are not associated with the entry.
Probab=53.13 E-value=1.3e+02 Score=27.95 Aligned_cols=29 Identities=21% Similarity=0.293 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCchHHHH
Q 006257 148 AGKAVYSAVWVASASLFMELLGFSTQKWL 176 (653)
Q Consensus 148 i~~li~v~i~ii~iiviL~~lGv~i~~lL 176 (653)
..++..+++++++.+..+..+|+-++.++
T Consensus 72 ~~~~~~~~~~~~~y~~~~~~lGf~~at~~ 100 (141)
T PF07331_consen 72 WKRVLLVLGLLVLYVLLLEYLGFIIATFL 100 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 34555555555555566666776554443
No 43
>PRK12438 hypothetical protein; Provisional
Probab=53.11 E-value=5.7e+02 Score=32.31 Aligned_cols=12 Identities=8% Similarity=0.052 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHH
Q 006257 145 FQFAGKAVYSAV 156 (653)
Q Consensus 145 l~~i~~li~v~i 156 (653)
+++++-+..+++
T Consensus 165 LPf~~~l~~~l~ 176 (991)
T PRK12438 165 LPFYRSVLNWLF 176 (991)
T ss_pred cHHHHHHHHHHH
Confidence 555555554443
No 44
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=51.92 E-value=4.7e+02 Score=30.93 Aligned_cols=12 Identities=0% Similarity=0.183 Sum_probs=7.4
Q ss_pred HHHHHHHHHCCC
Q 006257 347 LDLLRVISHHRA 358 (653)
Q Consensus 347 ~~Il~~~~~~GI 358 (653)
.+|.++++++|.
T Consensus 425 e~i~~al~~a~l 436 (559)
T COG4988 425 EEIIAALDQAGL 436 (559)
T ss_pred HHHHHHHHHhcH
Confidence 456666666664
No 45
>PRK03612 spermidine synthase; Provisional
Probab=51.46 E-value=4.5e+02 Score=30.54 Aligned_cols=31 Identities=23% Similarity=0.035 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCchHHHHHH
Q 006257 148 AGKAVYSAVWVASASLFMELLGFSTQKWLTA 178 (653)
Q Consensus 148 i~~li~v~i~ii~iiviL~~lGv~i~~lLa~ 178 (653)
+..+-.++--+++.++++..+|...+.++++
T Consensus 153 ~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a 183 (521)
T PRK03612 153 ADYLGALVGGLAFPFLLLPRLGLIRTAALTG 183 (521)
T ss_pred HHhHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 3333344444455566667888876555443
No 46
>PF06442 DHFR_2: R67 dihydrofolate reductase; InterPro: IPR009159 Dihydrofolate reductase (DHFR) (1.5.1.3 from EC) catalyses the NADPH-dependent reduction of dihydrofolate to tetrahydrofolate, an essential step in de novo synthesis both of glycine and of purines and deoxythymidine phosphate (the precursors of DNA synthesis) [], and important also in the conversion of deoxyuridine monophosphate to deoxythymidine monophosphate. Although DHFR is found ubiquitously in prokaryotes and eukaryotes, and is found in all dividing cells, maintaining levels of fully reduced folate coenzymes, the catabolic steps are still not well understood []. Bacterial species possesses distinct DHFR enzymes (based on their pattern of binding diaminoheterocyclic molecules), but mammalian DHFRs are highly similar []. The active site is situated in the N-terminal half of the sequence, which includes a conserved Pro-Trp dipeptide; the tryptophan has been shown [] to be involved in the binding of substrate by the enzyme. Its central role in DNA precursor synthesis, coupled with its inhibition by antagonists such as trimethoprim and methotrexate, which are used as anti-bacterial or anti-cancer agents, has made DHFR a target of anticancer chemotherapy. However, resistance has developed against some drugs, as a result of changes in DHFR itself []. This entry represents a plasmid-encoded DHFR which shows a high level of resistance to the antibiotic trimethoprim. It is a homotetramer with an unusual pore, which contains the active site, passing through the middle of the molecule []. Its structure is unrelated to that of chromosomal DHFRs.; GO: 0004146 dihydrofolate reductase activity, 0042493 response to drug, 0055114 oxidation-reduction process; PDB: 1VIF_A 3SFM_A 2P4T_A 2GQV_A 2RK2_A 2RH2_A 2RK1_A 1VIE_A.
Probab=50.91 E-value=19 Score=30.26 Aligned_cols=42 Identities=24% Similarity=0.507 Sum_probs=17.8
Q ss_pred HHHHHhhhh-hhccCCccCCcEEEEeecCCCeEEEEEEEcceeeEEE
Q 006257 194 FTNFLSSAM-IHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIV 239 (653)
Q Consensus 194 l~Nl~aGi~-I~~~rPFrVGD~I~Iki~~~~~~G~VeeIgLrsTT~I 239 (653)
+.|..+|-+ +-....|..||+|+ |..|....|.| +||.+ |.+
T Consensus 8 v~~~vag~fa~ps~atf~~gdrvr-kksgaawqg~v--vgwy~-t~l 50 (78)
T PF06442_consen 8 VSNPVAGQFAFPSNATFGMGDRVR-KKSGAAWQGQV--VGWYC-TKL 50 (78)
T ss_dssp -------------S-SS-TT-EEE-ESSSS--EEEE--EEEE---SS
T ss_pred cccccccceecccccccccchhhh-hcccccccceE--eEEEe-ccc
Confidence 345555543 45667999999999 45666677887 48888 654
No 47
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=49.55 E-value=4.9e+02 Score=33.95 Aligned_cols=24 Identities=17% Similarity=-0.007 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCC
Q 006257 147 FAGKAVYSAVWVASASLFMELLGF 170 (653)
Q Consensus 147 ~i~~li~v~i~ii~iiviL~~lGv 170 (653)
.++.++...+..+..++.|..+|.
T Consensus 1006 afs~ILdTnLTTLIA~lPLf~fGt 1029 (1403)
T PRK12911 1006 AFSAIFDSNLTTILASALLLMLDT 1029 (1403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344445544555555555555653
No 48
>PRK02509 hypothetical protein; Provisional
Probab=48.94 E-value=6.5e+02 Score=31.73 Aligned_cols=32 Identities=9% Similarity=0.074 Sum_probs=16.9
Q ss_pred HHHHHHHHHhhHHHHHHHhhhhh-hccCCccCCcEEE
Q 006257 181 LGTVLLTLAGREIFTNFLSSAMI-HATRPFVLNEWIQ 216 (653)
Q Consensus 181 i~glaiglA~qd~l~Nl~aGi~I-~~~rPFrVGD~I~ 216 (653)
++|+.+|+.++ +-..-+.+ +...||.+-|=+-
T Consensus 194 ~~sl~~g~~~~----~~W~~~l~f~n~~~Fg~~DP~F 226 (973)
T PRK02509 194 ILSLAFGLILS----GNWARVLQYFHSTPFNETDPLF 226 (973)
T ss_pred HHHHHHHHHHH----HHHHHHHHHhCCCCCCCCCCCC
Confidence 33444444443 33333333 3445999999764
No 49
>PRK11462 putative transporter; Provisional
Probab=48.59 E-value=3.9e+02 Score=29.95 Aligned_cols=16 Identities=25% Similarity=0.580 Sum_probs=10.5
Q ss_pred HHHHhhccccccchhh
Q 006257 47 NLLLRKSDNSWKKSKT 62 (653)
Q Consensus 47 ~~l~~r~~~~w~~~~~ 62 (653)
..+..|++++|.+++-
T Consensus 66 G~~~D~t~~r~Gr~rp 81 (460)
T PRK11462 66 GLLADRTRSRWGKFRP 81 (460)
T ss_pred eehhccCCCCCCCcch
Confidence 4466678888877433
No 50
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=47.87 E-value=4.4e+02 Score=29.46 Aligned_cols=15 Identities=13% Similarity=0.302 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHCCCc
Q 006257 345 ILLDLLRVISHHRAR 359 (653)
Q Consensus 345 I~~~Il~~~~~~GIe 359 (653)
+=++|.+.-++|||.
T Consensus 297 ~AlkIreiA~e~~Ip 311 (363)
T COG1377 297 VALKIREIAKEHGIP 311 (363)
T ss_pred HHHHHHHHHHHcCCc
Confidence 334555566666654
No 51
>PF03030 H_PPase: Inorganic H+ pyrophosphatase; InterPro: IPR004131 Two types of proteins that hydrolyse inorganic pyrophosphate (PPi), very different in both amino acid sequence and structure, have been characterised to date: soluble and membrane-bound proton-pumping pyrophosphatases (sPPases and H(+)-PPases, respectively). sPPases are ubiquitous proteins that hydrolyse PPi to release heat, whereas H+-PPases, so far unidentified in animal and fungal cells, couple the energy of PPi hydrolysis to proton movement across biological membranes [, ]. The latter type is represented by this group of proteins. H+-PPases (3.6.1.1 from EC) are also called vacuolar-type inorganic pyrophosphatases (V-PPase) or pyrophosphate-energised vacuolar membrane proton pumps []. In plants, vacuoles contain two enzymes for acidifying the interior of the vacuole, the V-ATPase and the V-PPase (V is for vacuolar) []. Two distinct biochemical subclasses of H+-PPases have been characterised to date: K+-stimulated and K+-insensitive [, ]. For additional information please see [, ].; GO: 0004427 inorganic diphosphatase activity, 0009678 hydrogen-translocating pyrophosphatase activity, 0015992 proton transport, 0016020 membrane; PDB: 4A01_A.
Probab=47.56 E-value=5.9e+02 Score=30.85 Aligned_cols=25 Identities=12% Similarity=0.090 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006257 104 LNFVRSLSTVLAFAYCLSSLIQQAQ 128 (653)
Q Consensus 104 l~~l~siliIl~i~~~l~~li~~l~ 128 (653)
+.+++..+.-.+.+|+..++-.+..
T Consensus 74 iaFliGa~~S~laGyiGM~vAt~aN 98 (682)
T PF03030_consen 74 IAFLIGALCSALAGYIGMRVATRAN 98 (682)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3455555555567777777765543
No 52
>PF07290 DUF1449: Protein of unknown function (DUF1449); InterPro: IPR010840 This family consists of several bacterial proteins of around 210 residues in length. The function of this family is unknown.
Probab=47.47 E-value=1.5e+02 Score=30.39 Aligned_cols=17 Identities=29% Similarity=0.557 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHh
Q 006257 70 IQPLMLWTGAILICRAL 86 (653)
Q Consensus 70 ~~PL~l~i~li~i~~al 86 (653)
+-|+++|+++.+.+.++
T Consensus 62 kvPlLI~L~l~l~~F~l 78 (202)
T PF07290_consen 62 KVPLLIWLVLLLSSFGL 78 (202)
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 34777776665544444
No 53
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=47.31 E-value=2.3e+02 Score=31.14 Aligned_cols=21 Identities=14% Similarity=0.248 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006257 24 LVPGIAIIVFATWGLGPLMRQ 44 (653)
Q Consensus 24 llial~ill~a~~ll~~Llr~ 44 (653)
++.++..+++.+|+...+..+
T Consensus 45 ligai~~~li~~~~~~~~~~~ 65 (356)
T COG4956 45 LIGAIIFFLISFWFGKYVLNW 65 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555554444443
No 54
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=47.08 E-value=1.8e+02 Score=35.59 Aligned_cols=13 Identities=8% Similarity=0.281 Sum_probs=9.9
Q ss_pred HHHHHHHHHCCCc
Q 006257 347 LDLLRVISHHRAR 359 (653)
Q Consensus 347 ~~Il~~~~~~GIe 359 (653)
.+|.+.|+++||+
T Consensus 468 ~~i~~~L~~~gi~ 480 (764)
T TIGR02865 468 EKIIRALNKNGIP 480 (764)
T ss_pred HHHHHHHHHCCCe
Confidence 4578888888884
No 55
>PF14348 DUF4400: Domain of unknown function (DUF4400)
Probab=46.10 E-value=2.8e+02 Score=27.79 Aligned_cols=74 Identities=20% Similarity=0.117 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHhhcCCccccchhHHHHHHHHHHHHHHHHHH-HHHHHhCCchHHHHHHHHHHHHHHHHHhhHHHHHH
Q 006257 120 LSSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASAS-LFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNF 197 (653)
Q Consensus 120 l~~li~~l~~~l~~~~~~~~~~~~~l~~i~~li~v~i~ii~ii-viL~~lGv~i~~lLa~lGi~glaiglA~qd~l~Nl 197 (653)
+.-+++.+.++-.++......... +.+...+.+.+++++. ++.-.+-+++.+.+..+ .+.+++|++..-+.+||
T Consensus 123 ~~~~vDGl~~R~iRr~~~g~eSp~---~~h~a~~~~~~~~~~~~~lyL~lP~~i~P~~~~l-~~a~llg~av~~t~s~F 197 (198)
T PF14348_consen 123 LAALVDGLVRRDIRRFGFGRESPF---VYHHAKRSVIPLLILPWVLYLSLPFSIPPNLVPL-PAALLLGLAVWITASNF 197 (198)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHcccccChHHHHH-HHHHHHHHHHHHHHHhc
Confidence 344455544444444332222221 2444444554444444 33334444544444443 44455666666666554
No 56
>PRK00068 hypothetical protein; Validated
Probab=45.11 E-value=7.4e+02 Score=31.30 Aligned_cols=12 Identities=8% Similarity=0.088 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHH
Q 006257 145 FQFAGKAVYSAV 156 (653)
Q Consensus 145 l~~i~~li~v~i 156 (653)
+++++.+..+++
T Consensus 163 LPf~~~l~~~l~ 174 (970)
T PRK00068 163 LPFYRSLLSYLL 174 (970)
T ss_pred hHHHHHHHHHHH
Confidence 556555555443
No 57
>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=44.41 E-value=4.4e+02 Score=29.68 Aligned_cols=30 Identities=27% Similarity=0.404 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCCc
Q 006257 64 HVMTSYIQPLMLWTGAILICRALDPVVLPT 93 (653)
Q Consensus 64 ~il~sl~~PL~l~i~li~i~~al~~l~lp~ 93 (653)
.+..++..|+.++++.+++...+..+++|.
T Consensus 158 Ki~~Al~YP~vll~v~~~v~~~Ll~~VvP~ 187 (397)
T COG1459 158 KIKSALIYPLVLLVVALVVVLFLLIFVVPQ 187 (397)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhcc
Confidence 567788889988888888877777777774
No 58
>PF03699 UPF0182: Uncharacterised protein family (UPF0182); InterPro: IPR005372 This family contains uncharacterised integral membrane proteins.; GO: 0016021 integral to membrane
Probab=42.92 E-value=7.3e+02 Score=30.58 Aligned_cols=11 Identities=9% Similarity=-0.158 Sum_probs=5.5
Q ss_pred HHHHHHHHHHH
Q 006257 145 FQFAGKAVYSA 155 (653)
Q Consensus 145 l~~i~~li~v~ 155 (653)
++++..+..++
T Consensus 155 LPf~~~l~~~l 165 (774)
T PF03699_consen 155 LPFLRFLQSFL 165 (774)
T ss_pred hHHHHHHHHHH
Confidence 55555554443
No 59
>PLN03223 Polycystin cation channel protein; Provisional
Probab=42.77 E-value=7.6e+02 Score=32.48 Aligned_cols=15 Identities=7% Similarity=-0.130 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 006257 149 GKAVYSAVWVASASL 163 (653)
Q Consensus 149 ~~li~v~i~ii~iiv 163 (653)
..++.++++++.+++
T Consensus 1328 pDLa~F~IIF~IVF~ 1342 (1634)
T PLN03223 1328 ADLMHFFVIFGMVFV 1342 (1634)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444433333
No 60
>PRK10845 colicin V production protein; Provisional
Probab=42.77 E-value=3.3e+02 Score=26.58 Aligned_cols=69 Identities=13% Similarity=0.200 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHh-CCchHHHHH
Q 006257 108 RSLSTVLAFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELL-GFSTQKWLT 177 (653)
Q Consensus 108 ~siliIl~i~~~l~~li~~l~~~l~~~~~~~~~~~~~l~~i~~li~v~i~ii~iiviL~~l-Gv~i~~lLa 177 (653)
.+.++++++.+++.+++..+.+.+.+...-+. -+..+..+-.+++..+++..++.++..+ ..+-.+.+.
T Consensus 64 ~af~~iFi~v~~~~~i~~~~l~~l~~~~~Lg~-~dr~lG~ifG~~rg~liv~v~l~~l~~~~~~~~~~~w~ 133 (162)
T PRK10845 64 IAIAVLFIATLIVGAIVNYVIGQLVEKTGLSG-TDRVLGVCFGALRGVLIVAAILFFLDTFTGFSKSEDWS 133 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHH
Confidence 34444555666666666655444444322221 2333445555566666655555455443 443334433
No 61
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=42.31 E-value=6.3e+02 Score=29.62 Aligned_cols=16 Identities=19% Similarity=0.295 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 006257 116 FAYCLSSLIQQAQKFF 131 (653)
Q Consensus 116 i~~~l~~li~~l~~~l 131 (653)
+.|++.+-+....+.+
T Consensus 354 f~~wIF~SL~~Tlk~L 369 (518)
T KOG2568|consen 354 FIYWIFISLAKTLKKL 369 (518)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333343333333333
No 62
>KOG3386 consensus Copper transporter [Inorganic ion transport and metabolism]
Probab=42.23 E-value=3.1e+02 Score=26.90 Aligned_cols=44 Identities=11% Similarity=0.006 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Q 006257 143 MGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTL 188 (653)
Q Consensus 143 ~~l~~i~~li~v~i~ii~iiviL~~lGv~i~~lLa~lGi~glaigl 188 (653)
....+++.+++++=++++-++.|...-+|.. +..+.++|.++|+
T Consensus 92 ~~~h~~qt~l~~~Q~~~sY~LMLifMtfN~~--l~Lavv~Ga~~G~ 135 (155)
T KOG3386|consen 92 SASHLIQTLLYVVQLGFSYLLMLIFMTFNGY--LFLAVVLGAGVGY 135 (155)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH--HHHHHHHHHhhhh
Confidence 3456666677777667776666666655543 3334456666655
No 63
>PRK08156 type III secretion system protein SpaS; Validated
Probab=41.76 E-value=5.4e+02 Score=28.71 Aligned_cols=9 Identities=22% Similarity=0.161 Sum_probs=4.5
Q ss_pred HHHHHHHcC
Q 006257 290 DMRKVLAKN 298 (653)
Q Consensus 290 ~L~e~L~s~ 298 (653)
.|++..++|
T Consensus 288 ~IreiA~e~ 296 (361)
T PRK08156 288 AVRAYAEKV 296 (361)
T ss_pred HHHHHHHHC
Confidence 455555444
No 64
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=41.02 E-value=46 Score=22.10 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=15.8
Q ss_pred CccCCcEEEEeecC--CCeEEEEEEEc
Q 006257 208 PFVLNEWIQTKIEG--YEVSGTVEHVG 232 (653)
Q Consensus 208 PFrVGD~I~Iki~~--~~~~G~VeeIg 232 (653)
+|.+||.|+| +.| .+..|.|.++.
T Consensus 1 ~~~~G~~V~I-~~G~~~g~~g~i~~i~ 26 (28)
T smart00739 1 KFEVGDTVRV-IAGPFKGKVGKVLEVD 26 (28)
T ss_pred CCCCCCEEEE-eECCCCCcEEEEEEEc
Confidence 5789999998 322 23456676653
No 65
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=40.50 E-value=2.1e+02 Score=35.01 Aligned_cols=58 Identities=14% Similarity=0.063 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCc------------------hHHHHHHHHH--------HHHHHHHHhhHHHHHHH
Q 006257 145 FQFAGKAVYSAVWVASASLFMELLGFS------------------TQKWLTAGGL--------GTVLLTLAGREIFTNFL 198 (653)
Q Consensus 145 l~~i~~li~v~i~ii~iiviL~~lGv~------------------i~~lLa~lGi--------~glaiglA~qd~l~Nl~ 198 (653)
-.++.+...+++.+..++-+|..+|.+ ++++++-+|+ .+++.||.+|+.+-.-+
T Consensus 509 ~~Fl~~Ag~iI~~~~iviw~l~~~~~~g~~~~~~~~S~l~~ig~~i~Pi~~plG~~~~nW~~~vali~G~~AKE~vv~tl 588 (772)
T PRK09554 509 KGFVLRAGKVIIIVSIFIGALNSFSLSGKIVDNINDSALASVSRVITPVLKPIGVHEDNWQATVGLFTGAMAKEVVVGTL 588 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCccccccchhhhHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777777632 2234444444 46667999999877766
Q ss_pred hhhh
Q 006257 199 SSAM 202 (653)
Q Consensus 199 aGi~ 202 (653)
+.+.
T Consensus 589 ~~ly 592 (772)
T PRK09554 589 NTLY 592 (772)
T ss_pred HHHH
Confidence 6654
No 66
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=40.46 E-value=72 Score=29.76 Aligned_cols=38 Identities=16% Similarity=0.044 Sum_probs=26.4
Q ss_pred ccCCcEEEEeecCCCeEEEEEEEcce-eeEEEEecCCcEEEEe
Q 006257 209 FVLNEWIQTKIEGYEVSGTVEHVGWW-SPTIVRGEDREAVHIP 250 (653)
Q Consensus 209 FrVGD~I~Iki~~~~~~G~VeeIgLr-sTT~Irt~dg~~V~IP 250 (653)
.++||+|.. .||..|+|.+|+-- .+..++. +|..+.+=
T Consensus 37 Lk~GD~VvT---~GGi~G~V~~I~~~~~~v~le~-~gv~i~v~ 75 (113)
T PRK06531 37 IQKGDEVVT---IGGLYGTVDEVDTEAKTIVLDV-DGVYLTFE 75 (113)
T ss_pred cCCCCEEEE---CCCcEEEEEEEecCCCEEEEEE-CCEEEEEE
Confidence 589999987 47899999999852 1155554 56555443
No 67
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=40.00 E-value=4.4e+02 Score=30.21 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 006257 66 MTSYIQPLMLWTGAILICRALD 87 (653)
Q Consensus 66 l~sl~~PL~l~i~li~i~~al~ 87 (653)
++.+..|+..++++++++..+.
T Consensus 155 l~~~a~~~~~~lf~~l~~~~~~ 176 (442)
T COG1457 155 LERIAVPLLLLLFLYLLALLFR 176 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4455567777777777777665
No 68
>PF14545 DBB: Dof, BCAP, and BANK (DBB) motif,
Probab=39.72 E-value=1.1e+02 Score=29.70 Aligned_cols=81 Identities=10% Similarity=0.086 Sum_probs=48.0
Q ss_pred hhhhccCCccCCcEEEEeecCCCeEEEEEEEcceeeEEEEecCCcEEEEeccccccCcEEeccCCCceEEEEEEEeec-C
Q 006257 201 AMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISH-L 279 (653)
Q Consensus 201 i~I~~~rPFrVGD~I~Iki~~~~~~G~VeeIgLrsTT~Irt~dg~~V~IPNs~L~s~~V~N~Sr~~~~ri~v~l~I~y-t 279 (653)
++|++..++.-||+++|.+...+..-.+....|+...++ .+.+|+--+.-.-..|.+-...-.+.-.-.|.| +
T Consensus 15 vfIiL~~~l~~~~~~eVef~~~n~~~~~~~~~~~N~yt~------~~~aPd~~~~pag~V~v~v~~~g~~~~~~~ikyys 88 (142)
T PF14545_consen 15 VFIILRDPLDEEDTVEVEFESNNKPIRRVPAKWENPYTL------QFKAPDFCLEPAGSVNVRVYCDGVSLGTRQIKYYS 88 (142)
T ss_pred EEEEEeCCCCCCCeEEEEEEeCCCeeEeccceEECCEEE------EEECchhcCCCCceEEEEEEECCEEEEEEeEEEEe
Confidence 678899999999999996554442222344444432222 355677655445555554433333445556777 7
Q ss_pred CHHHHHHH
Q 006257 280 DVHKINSI 287 (653)
Q Consensus 280 d~eki~~l 287 (653)
+.+.++++
T Consensus 89 ~~~el~~l 96 (142)
T PF14545_consen 89 RMRELEQL 96 (142)
T ss_pred cHHHHHHH
Confidence 77776664
No 69
>PRK13875 conjugal transfer protein TrbL; Provisional
Probab=39.63 E-value=6.4e+02 Score=28.94 Aligned_cols=29 Identities=10% Similarity=-0.066 Sum_probs=13.5
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Q 006257 171 STQKWLTAGGLGTVLLTLAGREIFTNFLSSA 201 (653)
Q Consensus 171 ~i~~lLa~lGi~glaiglA~qd~l~Nl~aGi 201 (653)
++..+++.+.+..+.++| -..+-++.+|+
T Consensus 234 tl~e~~~i~laal~ll~L--~~~~P~iAsGL 262 (440)
T PRK13875 234 TIDDAMAIVLAALSLLGL--GIFGPGIANGL 262 (440)
T ss_pred CHHHHHHHHHHHHHHHHH--HHhCcHHHHHh
Confidence 344444443333333333 33366777775
No 70
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=39.44 E-value=7.3e+02 Score=29.58 Aligned_cols=9 Identities=22% Similarity=0.449 Sum_probs=4.4
Q ss_pred ccchhhhee
Q 006257 583 ALEENIVLG 591 (653)
Q Consensus 583 ~~~~~~~~~ 591 (653)
.++|||.+|
T Consensus 568 Ti~eNi~l~ 576 (710)
T TIGR03796 568 TVRDNLTLW 576 (710)
T ss_pred cHHHHhhCC
Confidence 445555443
No 71
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=39.39 E-value=9.9 Score=40.65 Aligned_cols=15 Identities=27% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHHhCCchHHHHHHH
Q 006257 165 MELLGFSTQKWLTAG 179 (653)
Q Consensus 165 L~~lGv~i~~lLa~l 179 (653)
|..+|.+...+++..
T Consensus 129 Lr~~GAs~WtiLaFc 143 (381)
T PF05297_consen 129 LRELGASFWTILAFC 143 (381)
T ss_dssp ---------------
T ss_pred HHHhhhHHHHHHHHH
Confidence 344566655555543
No 72
>COG4291 Predicted membrane protein [Function unknown]
Probab=39.22 E-value=3.1e+02 Score=28.37 Aligned_cols=65 Identities=17% Similarity=0.079 Sum_probs=30.8
Q ss_pred HHHHHhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhhHHH
Q 006257 128 QKFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIF 194 (653)
Q Consensus 128 ~~~l~~~~~~~~~~~~~l~~i~~li~v~i~ii~iiviL~~lGv~i~~lLa~lGi~glaiglA~qd~l 194 (653)
-+++.+...+.+.+ ..+-+...++-+++-++++++.|..-+- .+.+..+..++++++|+..-...
T Consensus 71 p~~l~a~Ar~~Dep-~~~i~avtlvav~vslVslf~~ln~a~~-~~~v~l~~a~~sV~lgWltIh~m 135 (228)
T COG4291 71 PSYLKAHARREDEP-AAAIFAVTLVAVIVSLVSLFLLLNQANS-GQTVHLGFALASVALGWLTIHMM 135 (228)
T ss_pred HHHHHHhccccCCh-HHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCeeehhHHHHHHHHHHHHHHHH
Confidence 34554443333322 2232333444444445555555555442 33444555666666776544433
No 73
>COG4705 Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]
Probab=38.75 E-value=4.7e+02 Score=27.19 Aligned_cols=54 Identities=19% Similarity=0.219 Sum_probs=27.3
Q ss_pred HHHHhCCc-hHHHHHHHHHHHHHHHHHhhHHHHHHH-hhhhhhccCCcc--CCcEEEE
Q 006257 164 FMELLGFS-TQKWLTAGGLGTVLLTLAGREIFTNFL-SSAMIHATRPFV--LNEWIQT 217 (653)
Q Consensus 164 iL~~lGv~-i~~lLa~lGi~glaiglA~qd~l~Nl~-aGi~I~~~rPFr--VGD~I~I 217 (653)
.-+.+|.. .++.+..+|+++++.+.---.=+..++ =++..+++||+- -||...=
T Consensus 160 ltes~glgy~~g~lv~~~vIaliaaayyl~~ld~Vl~FWlAfIlTRPlGAt~GD~Ltk 217 (258)
T COG4705 160 LTESLGLGYIQGALVFAGVIALIAAAYYLTKLDDVLLFWLAFILTRPLGATFGDFLTK 217 (258)
T ss_pred HHhhcCchhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCccchhhhHHhcC
Confidence 33455655 445555666665544221111122222 345567889985 5777653
No 74
>PF06454 DUF1084: Protein of unknown function (DUF1084); InterPro: IPR009457 This entry consists of several hypothetical plant specific proteins of unknown function.
Probab=37.40 E-value=5.4e+02 Score=27.48 Aligned_cols=35 Identities=11% Similarity=0.019 Sum_probs=17.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 006257 9 TKSYNALQCSPQALKLVPGIAIIVFATWGLGPLMR 43 (653)
Q Consensus 9 ~~~~~~l~~~p~~l~llial~ill~a~~ll~~Llr 43 (653)
..-|+.....+.+.+.+......+.+...+.-+++
T Consensus 11 ~~w~~~~~~~~~~~~~~~~~La~iy~~v~~~aliQ 45 (281)
T PF06454_consen 11 NDWWNDVNESDKWQDGLFYALAAIYLLVALVALIQ 45 (281)
T ss_pred cchHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777764444433333333333333333
No 75
>KOG4016 consensus Synaptic vesicle protein Synaptogyrin involved in regulation of Ca2+-dependent exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.35 E-value=1.1e+02 Score=31.74 Aligned_cols=71 Identities=10% Similarity=0.119 Sum_probs=50.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhCCc-hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhccCCccCCc
Q 006257 141 RNMGFQFAGKAVYSAVWVASASLFMELLGFS-TQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNE 213 (653)
Q Consensus 141 ~~~~l~~i~~li~v~i~ii~iiviL~~lGv~-i~~lLa~lGi~glaiglA~qd~l~Nl~aGi~I~~~rPFrVGD 213 (653)
+..+..+....+-.++|+++++.+..+|-++ ......+.|.+=.+|.|.+-+++.=.+. ..+.-+-|++|-
T Consensus 103 raVl~Dl~~SalwtflwfvGFc~l~nqwqvs~p~~~~~~a~saraaIafsffSilsW~~~--A~lA~qR~~~g~ 174 (233)
T KOG4016|consen 103 RAVLADLGVSALWAFLWFVGFCFLANQWQVSKPKENPLGAGSARAAIAFSFFSILSWGGQ--AVLAFQRYRIGA 174 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcCcchHHHHHHHHHHHHHHHHHH--HHHHHHHHHhcC
Confidence 3345677788888999999999999998766 4455566667777777877776654333 335556677775
No 76
>PF09953 DUF2187: Uncharacterized protein conserved in bacteria (DUF2187); InterPro: IPR018690 This family consists of various hypothetical bacterial proteins with known function. It includes the uncharacterised YkvS protein from Bacillus subtilis.
Probab=37.19 E-value=54 Score=27.04 Aligned_cols=27 Identities=33% Similarity=0.230 Sum_probs=21.2
Q ss_pred ccCCcEEEEeecCCCeEEEEEEEcceeeEEE
Q 006257 209 FVLNEWIQTKIEGYEVSGTVEHVGWWSPTIV 239 (653)
Q Consensus 209 FrVGD~I~Iki~~~~~~G~VeeIgLrsTT~I 239 (653)
-.+||+|+++ .+..|+|+.+.=.| ..+
T Consensus 4 a~vGdiIefk---~g~~G~V~kv~eNS-VIV 30 (57)
T PF09953_consen 4 AKVGDIIEFK---DGFTGIVEKVYENS-VIV 30 (57)
T ss_pred cccCcEEEEc---CCcEEEEEEEecCc-EEE
Confidence 3689999984 56999999988666 544
No 77
>PF06638 Strabismus: Strabismus protein; InterPro: IPR009539 This family consists of several strabismus (STB) or Van Gogh-like (VANGL) proteins 1 and 2. The exact function of this family is unknown. It is thought, however that STB1 gene and STB2 may be potent tumour suppressor gene candidates [].; GO: 0007275 multicellular organismal development, 0016021 integral to membrane
Probab=37.06 E-value=4.1e+02 Score=30.91 Aligned_cols=11 Identities=18% Similarity=0.002 Sum_probs=5.8
Q ss_pred HHHHHHHHHHH
Q 006257 37 GLGPLMRQSRN 47 (653)
Q Consensus 37 ll~~Llr~i~~ 47 (653)
++.++...++-
T Consensus 105 flSPiaflvLP 115 (505)
T PF06638_consen 105 FLSPIAFLVLP 115 (505)
T ss_pred HHhhHHHHHhc
Confidence 35666654443
No 78
>PRK13022 secF preprotein translocase subunit SecF; Reviewed
Probab=36.83 E-value=5.6e+02 Score=27.44 Aligned_cols=24 Identities=13% Similarity=0.158 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCc
Q 006257 148 AGKAVYSAVWVASASLFMELLGFS 171 (653)
Q Consensus 148 i~~li~v~i~ii~iiviL~~lGv~ 171 (653)
+++.+...+-.+..++.|..+|.+
T Consensus 228 ~~~~l~TslTTl~~~l~L~~~g~~ 251 (289)
T PRK13022 228 LSRTIITSLTTLLVVLALYLFGGG 251 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcch
Confidence 444454554444444555555643
No 79
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=36.72 E-value=1.9e+02 Score=34.67 Aligned_cols=57 Identities=12% Similarity=0.118 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC----------------CchHHHHHHHHH------HHHHHHHHhhHHHHHHHhhh
Q 006257 145 FQFAGKAVYSAVWVASASLFMELLG----------------FSTQKWLTAGGL------GTVLLTLAGREIFTNFLSSA 201 (653)
Q Consensus 145 l~~i~~li~v~i~ii~iiviL~~lG----------------v~i~~lLa~lGi------~glaiglA~qd~l~Nl~aGi 201 (653)
-.++.++..+++....++-+|+.+| --+.+++..+|+ .+++.||++|+.+-.-++-+
T Consensus 498 k~Fl~kAgtiI~~~svlIW~Ls~~pp~g~~~~~~S~l~~ig~~l~Plf~plG~~~Wqa~v~Li~G~~AKEvvv~tl~~l 576 (653)
T COG0370 498 KEFLKKAGTIILAGSVLIWFLSSFPPGGVDNIKDSILAVIGKALEPLFSPLGFGDWQATVALIFGFIAKEVVVGTLGVL 576 (653)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhCCCcccCchhhhHHHHHHHHHHHhhhhhcCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466676666666666666777765 113455666666 36777999998876555443
No 80
>TIGR00966 3a0501s07 protein-export membrane protein SecF. This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein.
Probab=36.13 E-value=5.1e+02 Score=26.85 Aligned_cols=23 Identities=13% Similarity=0.150 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Q 006257 148 AGKAVYSAVWVASASLFMELLGF 170 (653)
Q Consensus 148 i~~li~v~i~ii~iiviL~~lGv 170 (653)
++.++...+..++.++-|..+|.
T Consensus 199 ~~~ii~ttltti~~flpl~~~~g 221 (246)
T TIGR00966 199 LSRTINTSLTTLLAVLALYVFGG 221 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 44444444444444444444443
No 81
>TIGR01129 secD protein-export membrane protein SecD. SecD from Mycobacterium tuberculosis has a long Pro-rich insert.
Probab=36.06 E-value=5.3e+02 Score=28.95 Aligned_cols=7 Identities=29% Similarity=0.738 Sum_probs=2.8
Q ss_pred HHHHHhC
Q 006257 163 LFMELLG 169 (653)
Q Consensus 163 viL~~lG 169 (653)
+.|..+|
T Consensus 361 l~L~~~g 367 (397)
T TIGR01129 361 LILYVFG 367 (397)
T ss_pred HHHHHHh
Confidence 3333444
No 82
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=35.48 E-value=2.9e+02 Score=29.38 Aligned_cols=23 Identities=13% Similarity=-0.028 Sum_probs=9.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 006257 19 PQALKLVPGIAIIVFATWGLGPL 41 (653)
Q Consensus 19 p~~l~llial~ill~a~~ll~~L 41 (653)
+.|.-.+++..+.++..|...++
T Consensus 33 d~Wi~~ll~~~~~l~~~~l~~~l 55 (320)
T PF03845_consen 33 DAWISVLLGGLIGLLLALLIYYL 55 (320)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH
Confidence 44433444444444444433333
No 83
>PRK11715 inner membrane protein; Provisional
Probab=35.40 E-value=4.6e+02 Score=30.03 Aligned_cols=21 Identities=24% Similarity=0.077 Sum_probs=10.3
Q ss_pred HhCCchHHHHHHHHHHHHHHH
Q 006257 167 LLGFSTQKWLTAGGLGTVLLT 187 (653)
Q Consensus 167 ~lGv~i~~lLa~lGi~glaig 187 (653)
++...--+||.|...+-++++
T Consensus 403 lLq~EDyALL~GSllLF~~La 423 (436)
T PRK11715 403 LLQSEDYALLLGSLLLFAVLA 423 (436)
T ss_pred HHHHhHHHHHHHHHHHHHHHH
Confidence 344444566665555444443
No 84
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=35.25 E-value=4.2e+02 Score=29.44 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006257 104 LNFVRSLSTVLAFAYCLSSLIQQAQ 128 (653)
Q Consensus 104 l~~l~siliIl~i~~~l~~li~~l~ 128 (653)
...+..+++.+++.+++.-+++...
T Consensus 187 ~~~~~~l~~~~~~~~~via~~D~~~ 211 (359)
T PRK05702 187 LDLVLKLLLLVVLALLVIAAIDVPF 211 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555566666666643
No 85
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=35.22 E-value=5.8e+02 Score=29.17 Aligned_cols=15 Identities=13% Similarity=0.073 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 006257 22 LKLVPGIAIIVFATW 36 (653)
Q Consensus 22 l~llial~ill~a~~ 36 (653)
.++-+..+.+.|+.+
T Consensus 298 ~KYgiLFI~LTF~~f 312 (430)
T PF06123_consen 298 VKYGILFIGLTFLAF 312 (430)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 86
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=35.10 E-value=2.2e+02 Score=34.93 Aligned_cols=46 Identities=7% Similarity=0.029 Sum_probs=32.9
Q ss_pred CCccCCcEEEEeecCCCeEEEEEEEcceeeEEEEecCCcEEEEeccccc
Q 006257 207 RPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFT 255 (653)
Q Consensus 207 rPFrVGD~I~Iki~~~~~~G~VeeIgLrsTT~Irt~dg~~V~IPNs~L~ 255 (653)
.+|++||+|.+ .+.+..|+|.+|.=-. ......++-.+.+|-+.|.
T Consensus 635 ~~~~~Gd~V~v--~~~~~~g~v~~i~~~~-~~~V~~g~~k~~v~~~~l~ 680 (782)
T PRK00409 635 EELKVGDEVKY--LSLGQKGEVLSIPDDK-EAIVQAGIMKMKVPLSDLE 680 (782)
T ss_pred cCCCCCCEEEE--ccCCceEEEEEEcCCC-eEEEEECCEEEEEeHHHce
Confidence 56999999998 3456889999994212 2233456788888888774
No 87
>PF12961 DUF3850: Domain of Unknown Function with PDB structure (DUF3850)
Probab=34.44 E-value=77 Score=27.31 Aligned_cols=32 Identities=13% Similarity=0.119 Sum_probs=22.7
Q ss_pred hccCCccCCcEEEEe-ecCCCeEEEEEEEccee
Q 006257 204 HATRPFVLNEWIQTK-IEGYEVSGTVEHVGWWS 235 (653)
Q Consensus 204 ~~~rPFrVGD~I~Ik-i~~~~~~G~VeeIgLrs 235 (653)
.-+|.|++||.+.+. .++++.+|.....-+.+
T Consensus 24 kNDRdf~VGD~L~L~E~~~~~YTGr~~~~~Ity 56 (72)
T PF12961_consen 24 KNDRDFQVGDILVLREWDNGEYTGREIEAEITY 56 (72)
T ss_pred ecCCCCCCCCEEEEEEecCCCccccEEEEEEEE
Confidence 357899999999882 34456778776666655
No 88
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=33.98 E-value=3.2e+02 Score=35.38 Aligned_cols=33 Identities=12% Similarity=-0.023 Sum_probs=23.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHH
Q 006257 8 FTKSYNALQCSPQALKLVPGIAIIVFATWGLGP 40 (653)
Q Consensus 8 l~~~~~~l~~~p~~l~llial~ill~a~~ll~~ 40 (653)
..|-+.++.+.|+...|+..+..++|++++..-
T Consensus 780 ~~~r~~~FysAPIvkFw~~~l~yi~FL~lftYv 812 (1381)
T KOG3614|consen 780 KLRRIRAFYSAPIVKFWLNVLSYIAFLLLFTYV 812 (1381)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHH
Confidence 345566888999988787777777776654433
No 89
>TIGR02120 GspF general secretion pathway protein F. This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher.
Probab=33.94 E-value=6.8e+02 Score=27.57 Aligned_cols=30 Identities=30% Similarity=0.298 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCCc
Q 006257 64 HVMTSYIQPLMLWTGAILICRALDPVVLPT 93 (653)
Q Consensus 64 ~il~sl~~PL~l~i~li~i~~al~~l~lp~ 93 (653)
.+..++..|+.++++.+++...+..+++|.
T Consensus 161 ~i~~al~YP~~ll~~~~~v~~~~~~~v~P~ 190 (399)
T TIGR02120 161 KITTALIYPAVLTVVAIGVVIFLLAYVVPK 190 (399)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhccc
Confidence 566788889877766666655555555553
No 90
>COG1615 Uncharacterized conserved protein [Function unknown]
Probab=33.82 E-value=9.8e+02 Score=29.42 Aligned_cols=12 Identities=8% Similarity=0.158 Sum_probs=8.1
Q ss_pred ccCCccCCcEEEE
Q 006257 205 ATRPFVLNEWIQT 217 (653)
Q Consensus 205 ~~rPFrVGD~I~I 217 (653)
....|.+ |+|+-
T Consensus 309 TR~Ay~l-d~v~~ 320 (885)
T COG1615 309 TREAYGL-DDVTY 320 (885)
T ss_pred HHHHhCC-ceecc
Confidence 3447788 88875
No 91
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=33.72 E-value=4.1e+02 Score=34.55 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCch
Q 006257 146 QFAGKAVYSAVWVASASLFMELLGFST 172 (653)
Q Consensus 146 ~~i~~li~v~i~ii~iiviL~~lGv~i 172 (653)
..+.|-+...+-.+..+++|.+||-+.
T Consensus 1338 QTLsRTI~TSlTTLLallaLllFGG~s 1364 (1403)
T PRK12911 1338 KTLGRTVMTTATTLSVLLILLFVGGGS 1364 (1403)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHcchh
Confidence 345555555555555556666776543
No 92
>COG4425 Predicted membrane protein [Function unknown]
Probab=33.13 E-value=8.3e+02 Score=28.39 Aligned_cols=51 Identities=20% Similarity=0.247 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006257 75 LWTGAILICRALDPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQAQKFFME 133 (653)
Q Consensus 75 l~i~li~i~~al~~l~lp~~~~~~i~~~ll~~l~siliIl~i~~~l~~li~~l~~~l~~ 133 (653)
+++..+++|.++.+-.+|..+. .+-+. ..+.++++|.+.-.+..+..|+..
T Consensus 54 ~~~g~vff~~sLTPSLLPr~~l-------~qgv~-sgf~~A~Gy~~gv~~~wl~~y~el 104 (588)
T COG4425 54 LLMGTVFFWASLTPSLLPRPWL-------FQGVL-SGFSLAAGYGAGVFLHWLWRYLEL 104 (588)
T ss_pred HHHHHHHHHHhcCccccCchHH-------HHHHH-HHHHHHhhhHHHHHHHHHHHHhhC
Confidence 4556778888888877775432 11111 222345666666666555555543
No 93
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=33.02 E-value=8.7e+02 Score=28.60 Aligned_cols=16 Identities=13% Similarity=0.098 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 006257 68 SYIQPLMLWTGAILIC 83 (653)
Q Consensus 68 sl~~PL~l~i~li~i~ 83 (653)
....|++-++..+++.
T Consensus 43 ~t~np~~gvl~Gi~~T 58 (533)
T COG1283 43 FTSNPILGVLAGIVAT 58 (533)
T ss_pred hcCCcHHHHHHHHHHH
Confidence 3344554444444433
No 94
>PF14045 YIEGIA: YIEGIA protein
Probab=32.75 E-value=4.9e+02 Score=28.09 Aligned_cols=18 Identities=28% Similarity=0.344 Sum_probs=10.4
Q ss_pred HHHHHHHHHhccccCCch
Q 006257 77 TGAILICRALDPVVLPTE 94 (653)
Q Consensus 77 i~li~i~~al~~l~lp~~ 94 (653)
+.+.++..+++.+.+|.-
T Consensus 36 i~LG~IAa~LGavaiPAL 53 (285)
T PF14045_consen 36 ISLGFIAAALGAVAIPAL 53 (285)
T ss_pred HHHHHHHHHhhhhhhHHH
Confidence 445556666666666653
No 95
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=32.58 E-value=2.8e+02 Score=31.65 Aligned_cols=11 Identities=9% Similarity=0.277 Sum_probs=6.4
Q ss_pred HHHHHHHHHHH
Q 006257 64 HVMTSYIQPLM 74 (653)
Q Consensus 64 ~il~sl~~PL~ 74 (653)
.++..+..|..
T Consensus 226 ~ll~~ItdP~v 236 (436)
T COG1030 226 RLLNWITDPSV 236 (436)
T ss_pred HHHHHhcCcHH
Confidence 55666666653
No 96
>PF13726 Na_H_antiport_2: Na+-H+ antiporter family
Probab=32.35 E-value=69 Score=28.65 Aligned_cols=44 Identities=18% Similarity=0.231 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhCCch-HHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Q 006257 158 VASASLFMELLGFST-QKWLTAGGLGTVLLTLAGREIFTNFLSSA 201 (653)
Q Consensus 158 ii~iiviL~~lGv~i-~~lLa~lGi~glaiglA~qd~l~Nl~aGi 201 (653)
-+.++++|..+-+++ -+++.++-++|++-|+...++++-|..|+
T Consensus 6 aV~vm~~L~LlR~nVvlalliaalvgGl~~Gl~l~~t~~~~~~Gm 50 (88)
T PF13726_consen 6 AVLVMIVLSLLRVNVVLALLIAALVGGLVGGLGLGETMSAFIDGM 50 (88)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHh
Confidence 344455566666663 36666777778888888888888888775
No 97
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=32.27 E-value=5.6e+02 Score=27.22 Aligned_cols=9 Identities=11% Similarity=-0.071 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 006257 178 AGGLGTVLL 186 (653)
Q Consensus 178 ~lGi~glai 186 (653)
.+..+|+++
T Consensus 278 ~~~~~gi~~ 286 (333)
T PF03176_consen 278 LLAAIGILI 286 (333)
T ss_pred HHHHHHHHH
Confidence 333334444
No 98
>COG3671 Predicted membrane protein [Function unknown]
Probab=32.27 E-value=4.5e+02 Score=24.97 Aligned_cols=41 Identities=17% Similarity=0.372 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHH
Q 006257 37 GLGPLMRQSRNLLLRKSDNSWKKSKTHHVMTSYIQPLMLWT 77 (653)
Q Consensus 37 ll~~Llr~i~~~l~~r~~~~w~~~~~~~il~sl~~PL~l~i 77 (653)
++-+++-.+...+-+.....|..++...+++.+-.-+++++
T Consensus 38 git~lvgvi~AYv~rd~~~~~~~SHy~f~iRTFw~~vl~~i 78 (125)
T COG3671 38 GITPLVGVIFAYVNRDKADSIAASHYEFLIRTFWLAVLWWI 78 (125)
T ss_pred HHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 34455544445555555566666655566665555544443
No 99
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=32.11 E-value=16 Score=31.76 Aligned_cols=39 Identities=10% Similarity=0.011 Sum_probs=0.4
Q ss_pred CCccCCcEEEEeecCCCeEEEEEEEcceeeEEEEecCCcEEEE
Q 006257 207 RPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHI 249 (653)
Q Consensus 207 rPFrVGD~I~Iki~~~~~~G~VeeIgLrsTT~Irt~dg~~V~I 249 (653)
.-.++||+|.+ .+|..|+|.+++=-+ ..++..+|..+.+
T Consensus 35 ~~Lk~Gd~VvT---~gGi~G~V~~i~~~~-v~lei~~g~~i~v 73 (82)
T PF02699_consen 35 ASLKPGDEVVT---IGGIYGTVVEIDDDT-VVLEIAPGVEITV 73 (82)
T ss_dssp G------------------------------------------
T ss_pred HcCCCCCEEEE---CCcEEEEEEEEeCCE-EEEEECCCeEEEE
Confidence 45789999997 478999999998777 7888777765544
No 100
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=31.27 E-value=25 Score=28.57 Aligned_cols=12 Identities=25% Similarity=0.451 Sum_probs=6.8
Q ss_pred cCCccCCcEEEE
Q 006257 206 TRPFVLNEWIQT 217 (653)
Q Consensus 206 ~rPFrVGD~I~I 217 (653)
..||+.||||++
T Consensus 3 ~Gpf~~GdrVQl 14 (54)
T PF14801_consen 3 RGPFRAGDRVQL 14 (54)
T ss_dssp --S--TT-EEEE
T ss_pred cCCCCCCCEEEE
Confidence 359999999998
No 101
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=31.17 E-value=1.1e+03 Score=29.19 Aligned_cols=8 Identities=13% Similarity=0.372 Sum_probs=4.8
Q ss_pred HHHHhCCc
Q 006257 164 FMELLGFS 171 (653)
Q Consensus 164 iL~~lGv~ 171 (653)
+...+|++
T Consensus 287 lae~~Gl~ 294 (832)
T PLN03159 287 ITDAIGTH 294 (832)
T ss_pred HHHHhCcc
Confidence 34566776
No 102
>PRK03557 zinc transporter ZitB; Provisional
Probab=31.02 E-value=6.9e+02 Score=26.80 Aligned_cols=41 Identities=12% Similarity=0.121 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Q 006257 145 FQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLL 186 (653)
Q Consensus 145 l~~i~~li~v~i~ii~iiviL~~lGv~i~~lLa~lGi~glai 186 (653)
......++..+..+++++++ ...|....--++++.++.+++
T Consensus 158 ~h~~~D~l~s~~vlv~~~~~-~~~g~~~~Dpi~~ilis~~i~ 198 (312)
T PRK03557 158 LHVLGDLLGSVGAIIAALII-IWTGWTPADPILSILVSVLVL 198 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHcCCcchhHHHHHHHHHHHH
Confidence 33444444444444443322 234665433344444444444
No 103
>PRK05812 secD preprotein translocase subunit SecD; Reviewed
Probab=30.53 E-value=7.2e+02 Score=28.94 Aligned_cols=14 Identities=21% Similarity=0.321 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHhC
Q 006257 156 VWVASASLFMELLG 169 (653)
Q Consensus 156 i~ii~iiviL~~lG 169 (653)
+..+..++.|..+|
T Consensus 439 lTTlia~l~L~~~g 452 (498)
T PRK05812 439 ITTLIAAIILYALG 452 (498)
T ss_pred HHHHHHHHHHHHHh
Confidence 33333344444444
No 104
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=30.08 E-value=6.9e+02 Score=28.00 Aligned_cols=9 Identities=11% Similarity=0.475 Sum_probs=6.3
Q ss_pred HHHHHHHcC
Q 006257 290 DMRKVLAKN 298 (653)
Q Consensus 290 ~L~e~L~s~ 298 (653)
.|+++.++|
T Consensus 300 kIreiA~e~ 308 (363)
T COG1377 300 KIREIAKEH 308 (363)
T ss_pred HHHHHHHHc
Confidence 677777666
No 105
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=29.69 E-value=1.2e+02 Score=29.83 Aligned_cols=28 Identities=11% Similarity=-0.056 Sum_probs=10.9
Q ss_pred HHHHHHHhCCchHH-HHHHHHHHHHHHHH
Q 006257 161 ASLFMELLGFSTQK-WLTAGGLGTVLLTL 188 (653)
Q Consensus 161 iiviL~~lGv~i~~-lLa~lGi~glaigl 188 (653)
++++|..++.+.+. +.+++|++.+|+|+
T Consensus 22 gI~~Lv~~~~~l~~~~s~~lg~~~lAlg~ 50 (191)
T PF04156_consen 22 GIAALVLFISGLGALISFILGIALLALGV 50 (191)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 33334444443322 22334444444443
No 106
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=29.48 E-value=5.1e+02 Score=26.59 Aligned_cols=112 Identities=10% Similarity=0.055 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccchhHHHHHHHHH
Q 006257 74 MLWTGAILICRALDPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFAGKAVY 153 (653)
Q Consensus 74 ~l~i~li~i~~al~~l~lp~~~~~~i~~~ll~~l~siliIl~i~~~l~~li~~l~~~l~~~~~~~~~~~~~l~~i~~li~ 153 (653)
++++.++.+..++..+.-...... .++..++..++.++...-+-..+.++...+..+...-...+-....++-
T Consensus 102 Ll~lg~~aLlsgitaff~~nA~~~-------GlItlll~a~vgGfamy~my~y~yr~~ad~sqr~~~~K~~lv~~~sm~l 174 (226)
T COG4858 102 LLFLGAMALLSGITAFFQKNAQVY-------GLITLLLTAVVGGFAMYIMYYYAYRMRADNSQRPGTWKYLLVAVLSMLL 174 (226)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcch-------hHHHHHHHHHhhhHHHHHHHHHHHHhhcccccCCchHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhCCchHHH-HHHHHHHHHHHHHHhhH
Q 006257 154 SAVWVASASLFMELLGFSTQKW-LTAGGLGTVLLTLAGRE 192 (653)
Q Consensus 154 v~i~ii~iiviL~~lGv~i~~l-La~lGi~glaiglA~qd 192 (653)
++.+.++-.++=..++..+.++ ++..|.+.+++=|-.|.
T Consensus 175 Wi~v~i~t~~lPtslN~~L~pi~l~IiGav~lalRfylkk 214 (226)
T COG4858 175 WIAVMIATVFLPTSLNPQLPPIALTIIGAVILALRFYLKK 214 (226)
T ss_pred HHHHHHHHhhCCCcCCcCCchHHHHHHHHHHHHHHHHHHH
No 107
>PF07760 DUF1616: Protein of unknown function (DUF1616); InterPro: IPR011674 This is a group of sequences from hypothetical archaeal proteins. The region in question is approximately 330 amino acid residues long.
Probab=29.08 E-value=3.3e+02 Score=29.04 Aligned_cols=22 Identities=18% Similarity=0.173 Sum_probs=16.6
Q ss_pred HhCCchHHHHHHHHHHHHHHHH
Q 006257 167 LLGFSTQKWLTAGGLGTVLLTL 188 (653)
Q Consensus 167 ~lGv~i~~lLa~lGi~glaigl 188 (653)
.+|++..+++.++++..+++++
T Consensus 81 ~~~i~~~~i~~~l~~~t~~~~~ 102 (287)
T PF07760_consen 81 PWGIRLIPILISLSIFTLVLSI 102 (287)
T ss_pred cCCcchhHHHHHHHHHHHHHHH
Confidence 4688988888888777666644
No 108
>PF11282 DUF3082: Protein of unknown function (DUF3082); InterPro: IPR021434 This family of proteins has no known function.
Probab=29.04 E-value=4.1e+02 Score=23.52 Aligned_cols=30 Identities=17% Similarity=0.048 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 006257 108 RSLSTVLAFAYCLSSLIQQAQKFFMETTDS 137 (653)
Q Consensus 108 ~siliIl~i~~~l~~li~~l~~~l~~~~~~ 137 (653)
...++...++|.++++...+..++..+.-.
T Consensus 9 ~Ga~~ag~la~~ly~lt~~i~~~fa~~p~~ 38 (82)
T PF11282_consen 9 SGALIAGGLAYGLYFLTTSIAASFASKPIH 38 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCC
Confidence 344445567888888888877777766544
No 109
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=28.42 E-value=8.9e+02 Score=27.24 Aligned_cols=23 Identities=4% Similarity=0.197 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 006257 103 LLNFVRSLSTVLAFAYCLSSLIQ 125 (653)
Q Consensus 103 ll~~l~siliIl~i~~~l~~li~ 125 (653)
+..++.+++-+++++++++.++.
T Consensus 143 l~el~KsllKv~li~~v~~~~~~ 165 (386)
T PRK12468 143 LAELLKAILKATLVGWVTGLFLW 165 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555544444
No 110
>PF05128 DUF697: Domain of unknown function (DUF697) ; InterPro: IPR021147 Proteins in this entry have no known function.
Probab=28.28 E-value=5.2e+02 Score=24.94 Aligned_cols=20 Identities=10% Similarity=0.152 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 006257 116 FAYCLSSLIQQAQKFFMETT 135 (653)
Q Consensus 116 i~~~l~~li~~l~~~l~~~~ 135 (653)
+.++-.+++..+.+.|..+.
T Consensus 50 ~~~iq~~Mi~~i~~iYG~~~ 69 (162)
T PF05128_consen 50 LLAIQAKMIREIAKIYGLRP 69 (162)
T ss_pred HHHHHHHHHHHHHHHHCCCC
Confidence 45556677776666665443
No 111
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=28.27 E-value=1.7e+02 Score=28.24 Aligned_cols=47 Identities=13% Similarity=0.039 Sum_probs=28.4
Q ss_pred CCccCCcEEEEeecC--CCeEEEEEEEccee-eEEEEec-CCcE--EEEecccc
Q 006257 207 RPFVLNEWIQTKIEG--YEVSGTVEHVGWWS-PTIVRGE-DREA--VHIPNHKF 254 (653)
Q Consensus 207 rPFrVGD~I~Iki~~--~~~~G~VeeIgLrs-TT~Irt~-dg~~--V~IPNs~L 254 (653)
..|++||+|+| ++| .+..|.|.++.-.. ..++.-. .... +.||++.+
T Consensus 93 ~~~~~G~~V~I-~~Gpf~g~~g~V~~vd~~k~~v~v~ll~~~~~~pv~v~~~~~ 145 (153)
T PRK08559 93 EGIKEGDIVEL-IAGPFKGEKARVVRVDESKEEVTVELLEAAVPIPVTVRGDQV 145 (153)
T ss_pred cCCCCCCEEEE-eccCCCCceEEEEEEcCCCCEEEEEEECCcceeeEEEeccEE
Confidence 46999999999 332 34678899886322 0222222 2333 67777665
No 112
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=28.26 E-value=6.3e+02 Score=27.94 Aligned_cols=25 Identities=12% Similarity=0.180 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006257 104 LNFVRSLSTVLAFAYCLSSLIQQAQ 128 (653)
Q Consensus 104 l~~l~siliIl~i~~~l~~li~~l~ 128 (653)
...+..+++.+++.+++.-+++...
T Consensus 180 ~~~~~~l~~~~~~~~~via~~D~~~ 204 (347)
T TIGR00328 180 LDIAKSLLILVLLLLLVIAVFDYFF 204 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555556666666643
No 113
>COG4873 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.14 E-value=67 Score=27.29 Aligned_cols=28 Identities=32% Similarity=0.249 Sum_probs=22.5
Q ss_pred CccCCcEEEEeecCCCeEEEEEEEcceeeEEE
Q 006257 208 PFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIV 239 (653)
Q Consensus 208 PFrVGD~I~Iki~~~~~~G~VeeIgLrsTT~I 239 (653)
--.+||.|+++ ++..|+|++++=-+ +.+
T Consensus 23 ~a~vgniief~---dgl~g~vek~nens-viv 50 (81)
T COG4873 23 IAKVGNIIEFK---DGLTGVVEKVNENS-VIV 50 (81)
T ss_pred eeeccceEEEc---ccceeeeeeecCCc-EEE
Confidence 45799999994 67999999998877 443
No 114
>PF09378 HAS-barrel: HAS barrel domain; InterPro: IPR018538 The HAS barrel is named after HerA-ATP Synthase. In ATP synthases, this domain is implicated in the assembly of the catalytic toroid and docking of accessory subunits, such as the subunit of the ATP synthase complex. Similar roles in docking of the functional partner, the NurA nuclease, and assembly of the HerA toroid complex appear likely for the HAS-barrel of the HerA family []. ; PDB: 3OAA_I.
Probab=27.91 E-value=56 Score=27.94 Aligned_cols=32 Identities=16% Similarity=0.239 Sum_probs=21.7
Q ss_pred hhccC--CccCCcEEEEeec-CCCeEEEEEEEcce
Q 006257 203 IHATR--PFVLNEWIQTKIE-GYEVSGTVEHVGWW 234 (653)
Q Consensus 203 I~~~r--PFrVGD~I~Iki~-~~~~~G~VeeIgLr 234 (653)
+..+. +.++||+|.++.+ +..+-|.|++|...
T Consensus 15 f~~~~~~~v~~GeyV~i~~~~~~~vlG~V~~i~~~ 49 (91)
T PF09378_consen 15 FIVEPSKDVRVGEYVVIEYDDGEKVLGMVTSISRG 49 (91)
T ss_dssp EEEEE-TT-BTTEEEEES----TTEEEEEEEEES-
T ss_pred EEEeCCCCCCcCeEEEEEEechhhhhhhhheeEEc
Confidence 34444 8999999999655 67789999988773
No 115
>PF00575 S1: S1 RNA binding domain; InterPro: IPR003029 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S1 domain was originally identified in ribosomal protein S1 but is found in a large number of RNA-associated proteins. The structure of the S1 RNA-binding domain from the Escherichia coli polynucleotide phosphorylase has been determined using NMR methods and consists of a five-stranded antiparallel beta barrel. Conserved residues on one face of the barrel and adjacent loops form the putative RNA-binding site []. The structure of the S1 domain is very similar to that of cold shock proteins. This suggests that they may both be derived from an ancient nucleic acid-binding protein []. More information about these proteins can be found at Protein of the Month: RNA Exosomes []. This entry does not include translation initiation factor IF-1 S1 domains.; GO: 0003723 RNA binding; PDB: 3L7Z_F 2JE6_I 2JEA_I 2JEB_I 1E3P_A 2Y0S_E 1WI5_A 2BH8_A 2CQO_A 2EQS_A ....
Probab=27.77 E-value=2.9e+02 Score=22.39 Aligned_cols=46 Identities=15% Similarity=0.190 Sum_probs=35.1
Q ss_pred ccCCcEEEEeecCCCeEEEEEEEcceeeEEEEecCCcEEEEeccccccCcEEeccC
Q 006257 209 FVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQ 264 (653)
Q Consensus 209 FrVGD~I~Iki~~~~~~G~VeeIgLrsTT~Irt~dg~~V~IPNs~L~s~~V~N~Sr 264 (653)
+++||.+. |+|.++.-.. ..+.-.++-.-+||.+.+....+.+...
T Consensus 2 ~~~G~iv~---------g~V~~v~~~g-~~V~l~~~~~g~ip~~~l~~~~~~~~~~ 47 (74)
T PF00575_consen 2 LKEGDIVE---------GKVTSVEDFG-VFVDLGNGIEGFIPISELSDDRIDDPSE 47 (74)
T ss_dssp SSTTSEEE---------EEEEEEETTE-EEEEESTSSEEEEEGGGSSSSEESSSHG
T ss_pred CCCCCEEE---------EEEEEEECCE-EEEEECCcEEEEEEeehhcCcccccccc
Confidence 35666554 8999999877 7787778999999999998874444443
No 116
>PRK13692 (3R)-hydroxyacyl-ACP dehydratase subunit HadA; Provisional
Probab=26.94 E-value=2.2e+02 Score=27.70 Aligned_cols=16 Identities=13% Similarity=0.341 Sum_probs=13.7
Q ss_pred hhhccCCccCCcEEEE
Q 006257 202 MIHATRPFVLNEWIQT 217 (653)
Q Consensus 202 ~I~~~rPFrVGD~I~I 217 (653)
-+-+-+|.++||.|.+
T Consensus 90 ~~~f~~PV~~GDtL~~ 105 (159)
T PRK13692 90 VLKFEKPIVAGDKLYC 105 (159)
T ss_pred EEEEeCCccCCCEEEE
Confidence 4568899999999986
No 117
>PF05552 TM_helix: Conserved TM helix; InterPro: IPR008910 This alignment represents a conserved transmembrane helix as well as some flanking sequence. It is often found in association with a Mechanosensitive (MS) channel IPR006685 from INTERPRO.; PDB: 2VV5_F 2OAU_E.
Probab=26.86 E-value=1.3e+02 Score=23.68 Aligned_cols=28 Identities=29% Similarity=0.526 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006257 24 LVPGIAIIVFATWGLGPLMRQSRNLLLRK 52 (653)
Q Consensus 24 llial~ill~a~~ll~~Llr~i~~~l~~r 52 (653)
++.++++++ ++|.+.++++.+.++++++
T Consensus 18 iv~AilIl~-vG~~va~~v~~~~~~~l~~ 45 (53)
T PF05552_consen 18 IVGAILILI-VGWWVAKFVRKLVRRLLEK 45 (53)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 444444444 4555666666666666664
No 118
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=26.63 E-value=1.2e+03 Score=27.95 Aligned_cols=9 Identities=44% Similarity=0.877 Sum_probs=3.8
Q ss_pred ccchhhhee
Q 006257 583 ALEENIVLG 591 (653)
Q Consensus 583 ~~~~~~~~~ 591 (653)
.++|||.+|
T Consensus 563 TI~eNi~l~ 571 (708)
T TIGR01193 563 SILENLLLG 571 (708)
T ss_pred HHHHHHhcc
Confidence 344444443
No 119
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=26.59 E-value=4e+02 Score=27.01 Aligned_cols=31 Identities=19% Similarity=0.410 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Q 006257 158 VASASLFMELLGFSTQKWLTAGGLGTVLLTL 188 (653)
Q Consensus 158 ii~iiviL~~lGv~i~~lLa~lGi~glaigl 188 (653)
++..-.+|..||+++..+-.++|+.-+.+|+
T Consensus 58 ~~~G~~iL~~fgIsl~afrIaGGiiL~~ia~ 88 (201)
T TIGR00427 58 LVFGDTILKLFGISIDAFRIAGGILLFTIAM 88 (201)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 3444457789999999999998888666665
No 120
>PF14163 SieB: Superinfection exclusion protein B
Probab=26.21 E-value=1.1e+02 Score=29.38 Aligned_cols=26 Identities=15% Similarity=0.092 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006257 106 FVRSLSTVLAFAYCLSSLIQQAQKFF 131 (653)
Q Consensus 106 ~l~siliIl~i~~~l~~li~~l~~~l 131 (653)
..+.+++++++++++..++..+.+.+
T Consensus 34 ~~i~~~fl~s~s~li~~~~~~~~~~~ 59 (151)
T PF14163_consen 34 PWIGLIFLFSVSYLIAQLLSFIYKEA 59 (151)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556667777777776654443
No 121
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=26.17 E-value=1.5e+03 Score=29.12 Aligned_cols=20 Identities=15% Similarity=0.027 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHCCCc
Q 006257 340 CVKEAILLDLLRVISHHRAR 359 (653)
Q Consensus 340 ~vr~~I~~~Il~~~~~~GIe 359 (653)
-+.+-++..+...++++|++
T Consensus 460 GvmE~L~~~l~~~~k~~G~~ 479 (1094)
T PRK02983 460 GVIELMVAELALEAESLGIT 479 (1094)
T ss_pred CHHHHHHHHHHHHHHHcCCC
Confidence 35677888889999999976
No 122
>PF11674 DUF3270: Protein of unknown function (DUF3270); InterPro: IPR021688 This family of proteins with unknown function appears to be restricted to Streptococcus.
Probab=25.52 E-value=3.3e+02 Score=24.53 Aligned_cols=47 Identities=15% Similarity=0.094 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhh
Q 006257 145 FQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGR 191 (653)
Q Consensus 145 l~~i~~li~v~i~ii~iiviL~~lGv~i~~lLa~lGi~glaiglA~q 191 (653)
+-++.|+.-+.++.+.+..++-.+++++-.-+..+.+.|+++..+.+
T Consensus 39 LlFF~nIA~FcI~tvlfsFvfLs~kl~t~~Af~~Ai~~Sl~~~~~~~ 85 (90)
T PF11674_consen 39 LLFFANIAFFCIFTVLFSFVFLSLKLNTFWAFPLAILISLAITQLVR 85 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33555665555555544444545555543333333334444444433
No 123
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=25.50 E-value=4.7e+02 Score=26.54 Aligned_cols=28 Identities=29% Similarity=0.551 Sum_probs=22.0
Q ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHH
Q 006257 161 ASLFMELLGFSTQKWLTAGGLGTVLLTL 188 (653)
Q Consensus 161 iiviL~~lGv~i~~lLa~lGi~glaigl 188 (653)
.-.+|..||+++..+-.++|+.-+.+|+
T Consensus 58 G~~iL~~fgIsl~af~IaGGiiL~~ia~ 85 (203)
T PF01914_consen 58 GQLILNFFGISLPAFRIAGGIILFLIAL 85 (203)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 3456778999999999998888666655
No 124
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=25.44 E-value=6.3e+02 Score=29.17 Aligned_cols=11 Identities=9% Similarity=0.749 Sum_probs=7.8
Q ss_pred HHhhccccccc
Q 006257 49 LLRKSDNSWKK 59 (653)
Q Consensus 49 l~~r~~~~w~~ 59 (653)
+..|++.+|.+
T Consensus 71 i~D~t~~r~Gr 81 (467)
T COG2211 71 IVDRTRSRWGR 81 (467)
T ss_pred eeccccccccc
Confidence 55577788877
No 125
>PRK08156 type III secretion system protein SpaS; Validated
Probab=25.37 E-value=6.9e+02 Score=27.89 Aligned_cols=24 Identities=4% Similarity=0.036 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 006257 105 NFVRSLSTVLAFAYCLSSLIQQAQ 128 (653)
Q Consensus 105 ~~l~siliIl~i~~~l~~li~~l~ 128 (653)
..+..+++.+++.+++.-+++...
T Consensus 176 ~~~~~l~~~~~~~~lvia~~D~~~ 199 (361)
T PRK08156 176 ELLVKLVLTFLACALIVLILDFIA 199 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555666666643
No 126
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=25.28 E-value=9.6e+02 Score=26.57 Aligned_cols=16 Identities=13% Similarity=0.237 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHCCCc
Q 006257 344 AILLDLLRVISHHRAR 359 (653)
Q Consensus 344 ~I~~~Il~~~~~~GIe 359 (653)
++=++|++.-++|||.
T Consensus 289 ~~A~~Ir~iA~e~~VP 304 (349)
T PRK12721 289 AQALHIVKLAERNGIP 304 (349)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 3444666666666664
No 127
>PLN03223 Polycystin cation channel protein; Provisional
Probab=25.18 E-value=5.5e+02 Score=33.67 Aligned_cols=10 Identities=0% Similarity=-0.041 Sum_probs=4.6
Q ss_pred CccCCcEEEE
Q 006257 208 PFVLNEWIQT 217 (653)
Q Consensus 208 PFrVGD~I~I 217 (653)
+-|+||-.++
T Consensus 1462 ~~~~~~~lr~ 1471 (1634)
T PLN03223 1462 EARVRRQLRI 1471 (1634)
T ss_pred cHHHHHHHHH
Confidence 4455554443
No 128
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal. This protein contains a KOW domain, shared by bacterial NusG and the L24p/L26e family of ribosomal proteins. Although called archaeal NusG in several publications, it is the only close homolog of eukaryotic L26e in archaeal genomes, shares an operon with L11 in many genomes, and has been sequenced from purified ribosomes. It is here designated as a ribosomal protein for these reasons.
Probab=24.70 E-value=1.7e+02 Score=27.62 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=18.5
Q ss_pred CCccCCcEEEEeecC--CCeEEEEEEEc
Q 006257 207 RPFVLNEWIQTKIEG--YEVSGTVEHVG 232 (653)
Q Consensus 207 rPFrVGD~I~Iki~~--~~~~G~VeeIg 232 (653)
..|++||+|+| ++| .|..|.|+++.
T Consensus 85 ~~~~~Gd~V~I-~~GPf~G~~g~v~~~d 111 (145)
T TIGR00405 85 ESIKKGDIVEI-ISGPFKGERAKVIRVD 111 (145)
T ss_pred cccCCCCEEEE-eecCCCCCeEEEEEEc
Confidence 34999999999 333 34678888875
No 129
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea.
Probab=24.70 E-value=1.2e+03 Score=27.60 Aligned_cols=25 Identities=12% Similarity=0.146 Sum_probs=9.7
Q ss_pred HHHhCCchHHHHHHHHHHHHHHHHH
Q 006257 165 MELLGFSTQKWLTAGGLGTVLLTLA 189 (653)
Q Consensus 165 L~~lGv~i~~lLa~lGi~glaiglA 189 (653)
|...++..-.-++....+|+++++.
T Consensus 310 l~~s~~~~~~~~g~~~~~gv~~~~l 334 (719)
T TIGR00921 310 LALSEFPMVSEFGLGLVAGLITAYL 334 (719)
T ss_pred HHhccChHHHHHHHHHHHHHHHHHH
Confidence 3333444333333333334444443
No 130
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=24.69 E-value=7.7e+02 Score=27.44 Aligned_cols=113 Identities=15% Similarity=0.146 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc-------------hhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 006257 20 QALKLVPGIAIIVFATWGLGPLMRQSRNLLLRKSDNSWKK-------------SKTHHVMTSYIQPLMLWTGAILICRAL 86 (653)
Q Consensus 20 ~~l~llial~ill~a~~ll~~Llr~i~~~l~~r~~~~w~~-------------~~~~~il~sl~~PL~l~i~li~i~~al 86 (653)
.++.+++-+.+++++..++..+++....+-.+.....|++ .....++.++.+-+.+.+++.++....
T Consensus 90 ~~~~~~~p~~~~~~~~~i~~~~~q~G~~fs~k~l~pk~~rlNPi~GlKriFS~~~l~el~KsllK~~~i~~i~~~~~~~~ 169 (358)
T PRK13109 90 AAGRFLLPILLILAVCGLAASLLQNLPRFVLDRIQPKWSRISPMKGWTRIFGTSGQVEFLKSLFKFLSVSVVVLLLLRSE 169 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCceeccccCCCChhhcCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cc--ccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006257 87 DP--VVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQAQKFFM 132 (653)
Q Consensus 87 ~~--l~lp~~~~~~i~~~ll~~l~siliIl~i~~~l~~li~~l~~~l~ 132 (653)
.. +.+.......+...+...+..+++.+++++++.-+++....++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~via~~D~~~q~~~ 217 (358)
T PRK13109 170 RAKAVNAMFVDPSQLPELILTVAIRLVSAVAIATIVLVALDLVWARFH 217 (358)
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 131
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=24.24 E-value=7.7e+02 Score=27.30 Aligned_cols=24 Identities=13% Similarity=0.077 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 006257 105 NFVRSLSTVLAFAYCLSSLIQQAQ 128 (653)
Q Consensus 105 ~~l~siliIl~i~~~l~~li~~l~ 128 (653)
..+..+++.+++.+++.-+++...
T Consensus 181 ~~~~~l~~~~~~~~~via~~D~~~ 204 (349)
T PRK12721 181 TLIFWLWGGLLACYLVFGILDYSF 204 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555556666643
No 132
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=24.15 E-value=6.6e+02 Score=24.29 Aligned_cols=18 Identities=6% Similarity=-0.062 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006257 147 FAGKAVYSAVWVASASLF 164 (653)
Q Consensus 147 ~i~~li~v~i~ii~iivi 164 (653)
.+.++..++++++++.++
T Consensus 171 ~i~~~~g~~li~~av~l~ 188 (191)
T PF01810_consen 171 WINRISGLLLIGFAVYLL 188 (191)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555555555443
No 133
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=24.14 E-value=9.8e+02 Score=30.06 Aligned_cols=149 Identities=10% Similarity=0.159 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccccCCchhhH
Q 006257 18 SPQALKLVPGIAIIVFATWGLGPLMRQSRNLLLRKSDNSWKKSKTHHVMTSYIQPLMLWTGAILICRALDPVVLPTEAGE 97 (653)
Q Consensus 18 ~p~~l~llial~ill~a~~ll~~Llr~i~~~l~~r~~~~w~~~~~~~il~sl~~PL~l~i~li~i~~al~~l~lp~~~~~ 97 (653)
+.+...++.+++++++++++ .-..|+. -++-++.-|+.+++.++++++ +++.-
T Consensus 331 ~~l~~~~~~g~~lv~~vl~l---------------fl~~~r~----~liv~~~IPisi~~t~~~m~~----~g~sl---- 383 (1021)
T PF00873_consen 331 NNLISNLLIGIILVVLVLLL---------------FLRNWRS----ALIVALSIPISILGTFIFMYL----FGISL---- 383 (1021)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---------------HHTSHHH----HHHHHHHHHHHHHHHHHHHHH----TTTTB----
T ss_pred HHHHHHHHHHhHhhhhhhhh---------------hhcchHH----HHHHHHHHHHHHHHHHHHHHH----cCCCc----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CccccchhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHH
Q 006257 98 VVKQRLLNFVRSLSTVLAFAYCLSSLIQQAQKFFMETTD-SGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWL 176 (653)
Q Consensus 98 ~i~~~ll~~l~siliIl~i~~~l~~li~~l~~~l~~~~~-~~~~~~~~l~~i~~li~v~i~ii~iiviL~~lGv~i~~lL 176 (653)
|.+.-..++++++.++=..+--+++.+.++.. ..........-...+..-++......++. ..+++
T Consensus 384 -------N~~SL~gl~laiG~lVDdaIVV~Eni~r~~~~~g~~~~~Aa~~~~~ev~~~i~~stlTti~v------F~Pl~ 450 (1021)
T PF00873_consen 384 -------NIMSLAGLILAIGMLVDDAIVVVENIYRHLEEEGKSPLEAAIEGTKEVAPPILASTLTTIAV------FLPLL 450 (1021)
T ss_dssp -------EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHH------TCGGG
T ss_pred -------hHHHHHhHHHhcccccccceehHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH------hhhhh
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhhhhcc
Q 006257 177 TAGGLGTVLLTLAGREIFTNFLSSAMIHAT 206 (653)
Q Consensus 177 a~lGi~glaiglA~qd~l~Nl~aGi~I~~~ 206 (653)
..-|..|-.+.--+-.++-.++++++..+.
T Consensus 451 f~~G~~g~~~~~l~~~v~~al~~Sllval~ 480 (1021)
T PF00873_consen 451 FMPGIAGQFFRPLALTVIIALIASLLVALT 480 (1021)
T ss_dssp GSBHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hcCCchHHHHHHHHHHHHHHHHHHHHHHHH
No 134
>COG4317 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.10 E-value=2.3e+02 Score=25.10 Aligned_cols=44 Identities=9% Similarity=-0.042 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 006257 157 WVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSS 200 (653)
Q Consensus 157 ~ii~iiviL~~lGv~i~~lLa~lGi~glaiglA~qd~l~Nl~aG 200 (653)
.+++++..|-..-..--..++..|++|+.+|--.-..+..+++|
T Consensus 12 llVGiiyaLl~vrsPAPP~iAlvGllGilvGeq~~p~~~~ll~g 55 (93)
T COG4317 12 LLVGIIYALLKVRSPAPPAIALVGLLGILVGEQIVPWAKRLLGG 55 (93)
T ss_pred HHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34445555555566666888899999999998888888888776
No 135
>COG1269 NtpI Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]
Probab=23.74 E-value=1.3e+03 Score=27.67 Aligned_cols=8 Identities=25% Similarity=0.090 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 006257 175 WLTAGGLG 182 (653)
Q Consensus 175 lLa~lGi~ 182 (653)
...+.|++
T Consensus 525 ~~~~~g~~ 532 (660)
T COG1269 525 MFGAFGIL 532 (660)
T ss_pred HhhhccHH
Confidence 33334444
No 136
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=23.70 E-value=1e+03 Score=30.02 Aligned_cols=36 Identities=14% Similarity=0.374 Sum_probs=27.3
Q ss_pred ceEEEEEEEeec-CCHHHHHHHHHHHHHHHHcCCCcc
Q 006257 267 HWRIKTHLAISH-LDVHKINSIVADMRKVLAKNPQVE 302 (653)
Q Consensus 267 ~~ri~v~l~I~y-td~eki~~l~e~L~e~L~s~p~v~ 302 (653)
...+.+.+.... ++.++..+..+.+.+.+++.|++.
T Consensus 557 ~~~~~v~v~~~~gtsl~~t~~~~~~~~~~l~~~~~V~ 593 (1025)
T PRK10614 557 TGRLMGFIQADQSISFQAMRGKLQDFMKIIRDDPAVD 593 (1025)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHHHHHHHhcCCCeE
Confidence 445566666676 788888888888888888777665
No 137
>PF08611 DUF1774: Fungal protein of unknown function (DUF1774); InterPro: IPR013920 This is a fungal protein of unknown function.
Probab=23.48 E-value=1.5e+02 Score=26.95 Aligned_cols=38 Identities=21% Similarity=0.378 Sum_probs=27.3
Q ss_pred HhCCchHHHHHHHHHHHHHH-HHHhhHHHHHHHhhhhhh
Q 006257 167 LLGFSTQKWLTAGGLGTVLL-TLAGREIFTNFLSSAMIH 204 (653)
Q Consensus 167 ~lGv~i~~lLa~lGi~glai-glA~qd~l~Nl~aGi~I~ 204 (653)
.+|++.+-|.+++|++=+.. .+++|=++.=.++|++..
T Consensus 26 ~~GfslS~L~~slgv~Q~~~kvialQWIFAFvI~avlfv 64 (97)
T PF08611_consen 26 AMGFSLSYLTASLGVGQFFIKVIALQWIFAFVIAAVLFV 64 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777878888888875443 578888888877776644
No 138
>PRK13024 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=23.41 E-value=1.4e+03 Score=27.93 Aligned_cols=15 Identities=13% Similarity=0.162 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHhCC
Q 006257 156 VWVASASLFMELLGF 170 (653)
Q Consensus 156 i~ii~iiviL~~lGv 170 (653)
+..+..++.|..+|.
T Consensus 372 lTTii~~lpL~~~g~ 386 (755)
T PRK13024 372 ITTLIAAAILFFFGT 386 (755)
T ss_pred HHHHHHHHHHHHhcc
Confidence 333333344444453
No 139
>PRK10739 putative antibiotic transporter; Provisional
Probab=23.23 E-value=6e+02 Score=25.77 Aligned_cols=32 Identities=16% Similarity=0.370 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Q 006257 157 WVASASLFMELLGFSTQKWLTAGGLGTVLLTL 188 (653)
Q Consensus 157 ~ii~iiviL~~lGv~i~~lLa~lGi~glaigl 188 (653)
+.+..-.+|..||+++..+=.++|+.-+.+|+
T Consensus 54 f~~~G~~iL~~fGIsl~afrIAGGilL~~ial 85 (197)
T PRK10739 54 FLFAGEKILAFLNLRTETVSISGGIILFLIAI 85 (197)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 33444457789999999999888888666655
No 140
>PF02933 CDC48_2: Cell division protein 48 (CDC48), domain 2; InterPro: IPR004201 This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at the C terminus. The VAT-N domain found in AAA ATPases (IPR003959 from INTERPRO) is a substrate 185-residue recognition domain [].; GO: 0005524 ATP binding; PDB: 1QDN_B 1QCS_A 1CR5_C 3QQ8_A 3HU2_A 3HU1_E 3HU3_A 3QWZ_A 3TIW_B 3QQ7_A ....
Probab=23.11 E-value=1.7e+02 Score=23.78 Aligned_cols=31 Identities=16% Similarity=-0.020 Sum_probs=19.4
Q ss_pred hccCCccCCcEEEEeecCCCeEEEEEEEcce
Q 006257 204 HATRPFVLNEWIQTKIEGYEVSGTVEHVGWW 234 (653)
Q Consensus 204 ~~~rPFrVGD~I~Iki~~~~~~G~VeeIgLr 234 (653)
+..+||..||.|.+.+.+....-.|.++.-.
T Consensus 14 l~~~pv~~Gd~i~~~~~~~~~~~~V~~~~P~ 44 (64)
T PF02933_consen 14 LEGRPVTKGDTIVFPFFGQALPFKVVSTEPS 44 (64)
T ss_dssp HTTEEEETT-EEEEEETTEEEEEEEEEECSS
T ss_pred HcCCCccCCCEEEEEeCCcEEEEEEEEEEcC
Confidence 4568999999999955444444445544443
No 141
>PRK09108 type III secretion system protein HrcU; Validated
Probab=22.90 E-value=9.4e+02 Score=26.68 Aligned_cols=112 Identities=13% Similarity=0.055 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc-------------hhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 006257 21 ALKLVPGIAIIVFATWGLGPLMRQSRNLLLRKSDNSWKK-------------SKTHHVMTSYIQPLMLWTGAILICRALD 87 (653)
Q Consensus 21 ~l~llial~ill~a~~ll~~Llr~i~~~l~~r~~~~w~~-------------~~~~~il~sl~~PL~l~i~li~i~~al~ 87 (653)
...+++-++++++++.++..+++....+-.+.....+++ .....++.++.+-+.+..++..+.....
T Consensus 84 ~~~~~lp~~~~~~~~~i~~~~~q~G~~fs~k~l~Pk~~rlNP~~glKriFS~~~l~el~KsllK~~~~~~v~~~~~~~~~ 163 (353)
T PRK09108 84 ALLLMLPFVAAAALAGILGTAPQTGLQISLKPVMPKFDALNPAAGLKKIFSLRSLIELVKMIVKAVVIAAVLWKGITSLM 163 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCchhcCHhHhHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred c--ccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006257 88 P--VVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQAQKFFM 132 (653)
Q Consensus 88 ~--l~lp~~~~~~i~~~ll~~l~siliIl~i~~~l~~li~~l~~~l~ 132 (653)
. +.+...........+...+..+++.+++.+++.-+++....++.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~ 210 (353)
T PRK09108 164 PLIVGAAYQSPPDLAQILWTVLMKLLAVAAGVFLLVGAADWKIQRWL 210 (353)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 142
>CHL00204 ycf1 Ycf1; Provisional
Probab=22.87 E-value=1.3e+03 Score=31.30 Aligned_cols=18 Identities=22% Similarity=0.357 Sum_probs=11.8
Q ss_pred HHHHHHhccccCCchhhH
Q 006257 80 ILICRALDPVVLPTEAGE 97 (653)
Q Consensus 80 i~i~~al~~l~lp~~~~~ 97 (653)
-+++..+.++.||.....
T Consensus 129 nlifQl~N~~iLpss~La 146 (1832)
T CHL00204 129 NLIFQLFNHFILPSSMLA 146 (1832)
T ss_pred hHHHHHhhHhhcccHHHH
Confidence 445566777888876543
No 143
>PF02934 GatB_N: GatB/GatE catalytic domain; InterPro: IPR006075 Glutamyl-tRNA(Gln) amidotransferase subunit B (6.3.5 from EC) [] is a microbial enzyme that furnishes a means for formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). The enzyme is composed of three subunits: A (an amidase), B and C. It also exists in eukaryotes as a protein targeted to the mitochondria. ; GO: 0016874 ligase activity; PDB: 3H0M_H 3H0R_K 3H0L_K 3AL0_B 3IP4_B 2DF4_B 2G5I_B 2F2A_B 2G5H_B 2DQN_B ....
Probab=22.85 E-value=4e+02 Score=28.83 Aligned_cols=152 Identities=11% Similarity=0.078 Sum_probs=86.5
Q ss_pred HHHhhhhh-hccCCccCCcEEEEeecCCCeEEEEEEEcceeeEEEEecCCcEEEEeccccccCcEEeccCCCceEEEEEE
Q 006257 196 NFLSSAMI-HATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHL 274 (653)
Q Consensus 196 Nl~aGi~I-~~~rPFrVGD~I~Iki~~~~~~G~VeeIgLrsTT~Irt~dg~~V~IPNs~L~s~~V~N~Sr~~~~ri~v~l 274 (653)
++=.|.+| .+..|+-.|=+|.+ ....|.-..|++.. ..+..+.|+.+.-.. =.......|.|.+.--+.+.-
T Consensus 82 DlPkgYQITQ~~~Pi~~~G~i~i----~~~~~~~k~I~I~~-ihlEEDagK~~h~~~--~~~~s~vD~NRaG~PLiEIVT 154 (289)
T PF02934_consen 82 DLPKGYQITQYDNPIAENGYIEI----EFEDGREKRIRIER-IHLEEDAGKSIHDGG--GEDYSLVDYNRAGVPLIEIVT 154 (289)
T ss_dssp TBTTSEEEEESSS-SEEEEEEEE----TECTSSTEEEEEEE-EEEEE---EEEEETT---TTEEEEETTSTT-EEEEEEE
T ss_pred ccCcCccccCCccceecCCEEEE----EecCCceEEEEEEE-EEehhhhhhhccccc--cceeeEEcccCCCccceEEee
Confidence 34466776 46778988999988 22234457889988 999999999998864 112346778887766666666
Q ss_pred EeecCCHHHHHHHHHHHHHHHHcCCCcccccc--ceEE----EEeecCCCCceEEEEEEEEEecCChHHHHHHHHHHHHH
Q 006257 275 AISHLDVHKINSIVADMRKVLAKNPQVEQQRL--HRRV----FLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLD 348 (653)
Q Consensus 275 ~I~ytd~eki~~l~e~L~e~L~s~p~v~~~~~--~P~V----~v~~~~~~~ssl~i~V~~~v~~~~~~~~~~vr~~I~~~ 348 (653)
.-++.+.+.+.+.++.|+..|+...-...... .-+| -+...+... ..-++-+++- ..+..++..+..+
T Consensus 155 ePd~~s~~EA~~~~~~L~~il~~lgvs~~~me~GslR~DvNVSv~~~g~~~----~g~rvEIKNl--nS~~~i~~AI~~E 228 (289)
T PF02934_consen 155 EPDIRSPEEAAAFLKKLRRILRYLGVSDGNMEEGSLRCDVNVSVRPKGEEK----FGTRVEIKNL--NSFRFIEKAIEYE 228 (289)
T ss_dssp -TTB-SHHHHHHHHHHHHHHHHHHTSB--SGGGTSEEEEEEEEECETTSSS----TS-EEEEEEE---SHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCcccCccccCcEEeeceeeecCCCCCC----CcceEEEecc--cCHHHHHHHHHHH
Confidence 66678899999999999998875433222210 1111 111111111 1222334433 3456788888888
Q ss_pred HHHHHH--HCCCcc
Q 006257 349 LLRVIS--HHRARL 360 (653)
Q Consensus 349 Il~~~~--~~GIei 360 (653)
+.+..+ ++|-++
T Consensus 229 i~RQ~~~l~~g~~v 242 (289)
T PF02934_consen 229 IERQIELLENGGEV 242 (289)
T ss_dssp HHHHHHHHHHTT--
T ss_pred HHHHHHHHHcCCCe
Confidence 877664 345433
No 144
>COG0601 DppB ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=22.79 E-value=1e+03 Score=25.94 Aligned_cols=63 Identities=14% Similarity=0.141 Sum_probs=29.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHH-HhCCch-HHHHHH-------HHHHHHHHHHHhhHHHHHHHhhhhh
Q 006257 141 RNMGFQFAGKAVYSAVWVASASLFME-LLGFST-QKWLTA-------GGLGTVLLTLAGREIFTNFLSSAMI 203 (653)
Q Consensus 141 ~~~~l~~i~~li~v~i~ii~iiviL~-~lGv~i-~~lLa~-------lGi~glaiglA~qd~l~Nl~aGi~I 203 (653)
|+..++++..+...+..+++..++.+ +|+++- +.++.- --+.|..+-+++=-++.|+++=+..
T Consensus 235 rNaliP~it~~~~~~~~ll~GavivE~iF~~PGiG~l~~~Ai~~~D~pli~g~~~i~~~~~i~~nli~Dily 306 (317)
T COG0601 235 RNALLPVITVLGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLVIALLVILGNLLVDILY 306 (317)
T ss_pred HhhHHHHHHHHHHHHHHHHhCHhHhhhhcCCCChHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555444434444555555555 566652 222211 1223444445555556666655544
No 145
>PF00467 KOW: KOW motif; InterPro: IPR005824 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The KOW (Kyprides, Ouzounis, Woese) motif is found in a variety of ribosomal proteins and the bacterial transcription antitermination proteins NusG []. ; PDB: 3BBO_W 2HGJ_X 2HGQ_X 2HGU_X 1NPP_B 1M1G_D 1NPR_A 2XHC_A 2KVQ_G 2JVV_A ....
Probab=22.77 E-value=1.3e+02 Score=21.27 Aligned_cols=22 Identities=14% Similarity=0.309 Sum_probs=15.8
Q ss_pred CCcEEEEeecC--CCeEEEEEEEcc
Q 006257 211 LNEWIQTKIEG--YEVSGTVEHVGW 233 (653)
Q Consensus 211 VGD~I~Iki~~--~~~~G~VeeIgL 233 (653)
+||+|.| +.| -+..|.|.+|.-
T Consensus 1 ~Gd~V~V-~~G~~~G~~G~I~~i~~ 24 (32)
T PF00467_consen 1 VGDTVKV-ISGPFKGKIGKIVEIDR 24 (32)
T ss_dssp TTSEEEE-SSSTTTTEEEEEEEEET
T ss_pred CCCEEEE-eEcCCCCceEEEEEEEC
Confidence 5999998 332 357888888764
No 146
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=22.68 E-value=8.4e+02 Score=27.45 Aligned_cols=24 Identities=4% Similarity=-0.082 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 006257 105 NFVRSLSTVLAFAYCLSSLIQQAQ 128 (653)
Q Consensus 105 ~~l~siliIl~i~~~l~~li~~l~ 128 (653)
.++..+++.+++++++.-+++.+.
T Consensus 188 ~~~~~l~~~~~~~~~via~~D~~~ 211 (386)
T PRK12468 188 HLIIFCGLVVVLGLSPMVGFDVFY 211 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555666666643
No 147
>PTZ00243 ABC transporter; Provisional
Probab=22.63 E-value=1.9e+03 Score=29.20 Aligned_cols=16 Identities=19% Similarity=0.119 Sum_probs=8.1
Q ss_pred CchHHHHHHHHHHHHH
Q 006257 170 FSTQKWLTAGGLGTVL 185 (653)
Q Consensus 170 v~i~~lLa~lGi~gla 185 (653)
+++..+++++.+++++
T Consensus 498 Lt~~~vft~laL~~~L 513 (1560)
T PTZ00243 498 LTPEVVFPTIALLGVL 513 (1560)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 3444555555555443
No 148
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=22.54 E-value=1.4e+03 Score=27.35 Aligned_cols=31 Identities=10% Similarity=0.174 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 006257 61 KTHHVMTSYIQPLMLWTGAILICRALDPVVL 91 (653)
Q Consensus 61 ~~~~il~sl~~PL~l~i~li~i~~al~~l~l 91 (653)
.++.++..+...+++++-+++.|.+...+..
T Consensus 138 ~~~~~l~~i~~a~f~fLPiliays~Ak~~~~ 168 (610)
T TIGR01995 138 QTYQILNAMGDAVFYFLPILLAITAAKRFKV 168 (610)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3455666666666666666666666555543
No 149
>PF06011 TRP: Transient receptor potential (TRP) ion channel; InterPro: IPR010308 This family consists of hypothetical proteins of unknown function found in fungi.
Probab=22.53 E-value=1.1e+03 Score=26.41 Aligned_cols=18 Identities=17% Similarity=0.130 Sum_probs=11.8
Q ss_pred hhhhhhccCCccCCcEEE
Q 006257 199 SSAMIHATRPFVLNEWIQ 216 (653)
Q Consensus 199 aGi~I~~~rPFrVGD~I~ 216 (653)
.++.+.+.+.+.+.+..+
T Consensus 367 ~~l~i~f~~~~~~~~~~~ 384 (438)
T PF06011_consen 367 LFLLIAFLPSLNLSEIVR 384 (438)
T ss_pred HHHHHHHhcccCCCcccc
Confidence 445566777787777665
No 150
>PRK11404 putative PTS system transporter subunits IIBC; Provisional
Probab=22.37 E-value=9.7e+02 Score=27.73 Aligned_cols=24 Identities=13% Similarity=-0.165 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHH-HHHHHHHH
Q 006257 62 THHVMTSYIQPLMLWT-GAILICRA 85 (653)
Q Consensus 62 ~~~il~sl~~PL~l~i-~li~i~~a 85 (653)
.+.++..+..-.+.++ -+++.|.+
T Consensus 172 ~~~~l~~ig~a~F~fm~Pil~ayiA 196 (482)
T PRK11404 172 FTWVVESIGYLGFTFMIPIMGAYIA 196 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555444444 33444443
No 151
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=22.36 E-value=1e+03 Score=25.86 Aligned_cols=41 Identities=17% Similarity=0.107 Sum_probs=20.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHH
Q 006257 141 RNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLG 182 (653)
Q Consensus 141 ~~~~l~~i~~li~v~i~ii~iiviL~~lGv~i~~lLa~lGi~ 182 (653)
+-..+.++..++..+..+++.+++. .+|...---+.++.+.
T Consensus 156 r~a~LHvl~D~Lgsv~vIia~i~i~-~~~w~~~Dpi~si~i~ 196 (296)
T COG1230 156 RGAYLHVLGDALGSVGVIIAAIVIR-FTGWSWLDPILSIVIA 196 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCccchHHHHHHH
Confidence 3344667777666666555554433 3343322224444443
No 152
>PRK10573 type IV pilin biogenesis protein; Provisional
Probab=22.34 E-value=6.9e+02 Score=27.53 Aligned_cols=29 Identities=31% Similarity=0.443 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCC
Q 006257 64 HVMTSYIQPLMLWTGAILICRALDPVVLP 92 (653)
Q Consensus 64 ~il~sl~~PL~l~i~li~i~~al~~l~lp 92 (653)
.+..++..|+.++++.+++...+..+++|
T Consensus 159 ~i~~al~YP~~ll~~~~~v~~~~~~~vlP 187 (399)
T PRK10573 159 KVKKALRYPLIILAVALLVVLAMLHFVLP 187 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56667777987776666665555444444
No 153
>PRK10694 acyl-CoA esterase; Provisional
Probab=22.23 E-value=1.1e+02 Score=28.83 Aligned_cols=31 Identities=13% Similarity=0.110 Sum_probs=24.4
Q ss_pred hhhccCCccCCcEEEEeecCCCeEEEEEEEcceeeEEEE
Q 006257 202 MIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVR 240 (653)
Q Consensus 202 ~I~~~rPFrVGD~I~Iki~~~~~~G~VeeIgLrsTT~Ir 240 (653)
-+.|.+|.++||+|++ .++|+.+|=.+ ..++
T Consensus 61 ~i~F~~Pv~~Gd~l~~-------~a~V~~~g~sS-~~v~ 91 (133)
T PRK10694 61 GMTFLRPVAVGDVVCC-------YARCVKTGTTS-ISIN 91 (133)
T ss_pred ceEECCCcccCcEEEE-------EEEEEEccCce-EEEE
Confidence 3578899999999986 47888888877 5443
No 154
>CHL00084 rpl19 ribosomal protein L19
Probab=22.08 E-value=5.6e+02 Score=24.14 Aligned_cols=26 Identities=12% Similarity=0.051 Sum_probs=17.4
Q ss_pred CCccCCcEEEEee--cCC------CeEEEEEEEc
Q 006257 207 RPFVLNEWIQTKI--EGY------EVSGTVEHVG 232 (653)
Q Consensus 207 rPFrVGD~I~Iki--~~~------~~~G~VeeIg 232 (653)
..|++||.|.|.. ..| .++|.|..+.
T Consensus 21 p~f~~GDtV~V~~~i~eg~k~R~q~F~GvvI~~r 54 (117)
T CHL00084 21 PKIRVGDTVKVGVLIQEGNKERVQFYEGTVIAKK 54 (117)
T ss_pred CccCCCCEEEEEEEEecCCeeEeceEEEEEEEEe
Confidence 4699999999832 222 2677777663
No 155
>PF03739 YjgP_YjgQ: Predicted permease YjgP/YjgQ family; InterPro: IPR005495 Members of this family are predicted integral membrane proteins of unknown function. They are about 350 amino acids long, contain about 6 transmembrane regions and may be permeases, although there is no verification of this.; GO: 0016021 integral to membrane
Probab=22.06 E-value=9.1e+02 Score=25.68 Aligned_cols=23 Identities=26% Similarity=0.208 Sum_probs=12.4
Q ss_pred HHHHhCCchHHHHHHHHHHHHHH
Q 006257 164 FMELLGFSTQKWLTAGGLGTVLL 186 (653)
Q Consensus 164 iL~~lGv~i~~lLa~lGi~glai 186 (653)
++...|++...++...-..++++
T Consensus 83 a~~a~GiS~~~l~~p~i~~~l~~ 105 (354)
T PF03739_consen 83 AMRASGISLKRLLRPIIIFALLL 105 (354)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHH
Confidence 44456888766655444443333
No 156
>cd03452 MaoC_C MaoC_C The C-terminal hot dog fold of the MaoC (monoamine oxidase C) dehydratase regulatory protein. Orthologs of MaoC include PaaZ [Escherichia coli] and PaaN [Pseudomonas putida], which are putative ring-opening enzymes involved in phenylacetic acid degradation. The C-terminal domain of MaoC has sequence similarity to (R)-specific enoyl-CoA hydratase,Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. MaoC also has an N-terminal PutA domain like that found in the E. coli PutA proline dehydrogenase and other members of the aldehyde dehydrogenase family.
Probab=22.05 E-value=1.5e+02 Score=27.91 Aligned_cols=16 Identities=19% Similarity=0.181 Sum_probs=13.9
Q ss_pred hhhccCCccCCcEEEE
Q 006257 202 MIHATRPFVLNEWIQT 217 (653)
Q Consensus 202 ~I~~~rPFrVGD~I~I 217 (653)
-+-|.+|..+||.|.+
T Consensus 82 ~~rf~~PV~~GDtl~~ 97 (142)
T cd03452 82 NLRFLEPVYPGDTIQV 97 (142)
T ss_pred eEEECCCCCCCCEEEE
Confidence 4678899999999986
No 157
>COG4425 Predicted membrane protein [Function unknown]
Probab=21.77 E-value=1.3e+03 Score=26.89 Aligned_cols=35 Identities=17% Similarity=0.100 Sum_probs=20.2
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006257 16 QCSPQALKLVPGIAIIVFATWGLGPLMRQSRNLLLR 51 (653)
Q Consensus 16 ~~~p~~l~llial~ill~a~~ll~~Llr~i~~~l~~ 51 (653)
.+.|.+.|-++ .++..++.++++-.++++..++-.
T Consensus 70 LPr~~l~qgv~-sgf~~A~Gy~~gv~~~wl~~y~el 104 (588)
T COG4425 70 LPRPWLFQGVL-SGFSLAAGYGAGVFLHWLWRYLEL 104 (588)
T ss_pred cCchHHHHHHH-HHHHHHhhhHHHHHHHHHHHHhhC
Confidence 34455443333 345555667777777777765544
No 158
>COG4452 CreD Inner membrane protein involved in colicin E2 resistance [Defense mechanisms]
Probab=21.72 E-value=1.2e+03 Score=26.45 Aligned_cols=23 Identities=26% Similarity=0.121 Sum_probs=15.9
Q ss_pred HHHHhCCchHHHHHHHHHHHHHH
Q 006257 164 FMELLGFSTQKWLTAGGLGTVLL 186 (653)
Q Consensus 164 iL~~lGv~i~~lLa~lGi~glai 186 (653)
+..++.-+-.++|++.++.-+++
T Consensus 394 m~glL~~edyALL~Gs~llf~~L 416 (443)
T COG4452 394 MFGLLNSEDYALLLGSLLLFVAL 416 (443)
T ss_pred HHHHhhhhHHHHHHhhHHHHHHH
Confidence 34466777778888888775554
No 159
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=21.53 E-value=31 Score=37.05 Aligned_cols=12 Identities=8% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH
Q 006257 148 AGKAVYSAVWVA 159 (653)
Q Consensus 148 i~~li~v~i~ii 159 (653)
+.-++.++||+-
T Consensus 173 L~LFlaiLIWlY 184 (381)
T PF05297_consen 173 LLLFLAILIWLY 184 (381)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 334455556655
No 160
>PRK10420 L-lactate permease; Provisional
Probab=21.45 E-value=1.4e+03 Score=27.02 Aligned_cols=17 Identities=6% Similarity=0.094 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006257 110 LSTVLAFAYCLSSLIQQ 126 (653)
Q Consensus 110 iliIl~i~~~l~~li~~ 126 (653)
+..+++.+.+++++...
T Consensus 80 I~~II~~Ai~ly~~~~~ 96 (551)
T PRK10420 80 IAWIIIAAVFVYKISVK 96 (551)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555566677777655
No 161
>TIGR02611 conserved hypothetical protein TIGR02611. Members of this family are Actinobacterial putative proteins of about 150 amino acids in length with three apparent transmembrane helix and an unusual motif with consensus sequence PGPGW.
Probab=21.35 E-value=7.1e+02 Score=23.64 Aligned_cols=56 Identities=16% Similarity=0.224 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006257 70 IQPLMLWTGAILICRALDPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQAQKFFM 132 (653)
Q Consensus 70 ~~PL~l~i~li~i~~al~~l~lp~~~~~~i~~~ll~~l~siliIl~i~~~l~~li~~l~~~l~ 132 (653)
.+++...+...++..++..+.+|.+.. +.++..+.++..=.-++.++++...+.+.
T Consensus 24 ~ri~v~v~G~~~~~~Gi~ml~lPGpG~-------l~i~iGl~iLatEf~WA~r~L~~~~r~~~ 79 (121)
T TIGR02611 24 VRPLVLVVGWVVLIVGIITIPLPGPGW-------LTIFIGLAILSLEFVWAQRLLRWGVRKYD 79 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCchH-------HHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 345555555666666665566776532 12333333332223344555555444433
No 162
>COG4781 Membrane domain of membrane-anchored glycerophosphoryl diester phosphodiesterase [Energy production and conversion]
Probab=21.26 E-value=1.1e+03 Score=25.95 Aligned_cols=141 Identities=13% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh------ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccccCCchhhH
Q 006257 24 LVPGIAIIVFATWGLGPLMRQSRNLLLRK------SDNSWKKSKTHHVMTSYIQPLMLWTGAILICRALDPVVLPTEAGE 97 (653)
Q Consensus 24 llial~ill~a~~ll~~Llr~i~~~l~~r------~~~~w~~~~~~~il~sl~~PL~l~i~li~i~~al~~l~lp~~~~~ 97 (653)
+|+..+.+++++|+-.|++-.+-..+..+ -+..|++...+.+.-++..-+......++++..+....++.....
T Consensus 168 ~~l~~~~l~liFyis~RLif~LPl~i~~~~tv~~Air~Swk~TKk~~f~l~~~~~~I~l~~~~l~sL~~s~~~~~~~~vd 247 (340)
T COG4781 168 WWLLILFLALIFYISVRLIFALPLIILDQLTVREAIRESWKKTKKNVFFLAWKLFLILLKIILLLSLIISGILLAQDLVD 247 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHh-----hcCCccccchhHHHHHHHHHHHHHHHHHHHH
Q 006257 98 VVKQRLLNFVRSLSTVLAFAYCLSSLIQQ-AQKFFME-----TTDSGDARNMGFQFAGKAVYSAVWVASASLF 164 (653)
Q Consensus 98 ~i~~~ll~~l~siliIl~i~~~l~~li~~-l~~~l~~-----~~~~~~~~~~~l~~i~~li~v~i~ii~iivi 164 (653)
..+..++--+..+.++..+.++...+... +..++.+ ..++..++..-.+..++...+.+.++++..+
T Consensus 248 ~~g~aliva~~~l~vi~~~~ff~~~~f~~~l~s~L~~~~~~e~~~~~P~~~nK~p~vrr~~fii~s~~a~~~F 320 (340)
T COG4781 248 KIGEALIVAIINLVVIWNLYFFALTFFLVKLASFLVGEADLEELDDLPRRENKDPKVRRKYFIIVSTLAVLFF 320 (340)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhccccccccCchhhhhHHHHHHHHHHHHH
No 163
>PRK11598 putative metal dependent hydrolase; Provisional
Probab=21.23 E-value=1.4e+03 Score=26.93 Aligned_cols=11 Identities=27% Similarity=0.404 Sum_probs=5.3
Q ss_pred HHHHHHHCCCc
Q 006257 349 LLRVISHHRAR 359 (653)
Q Consensus 349 Il~~~~~~GIe 359 (653)
+.+.++++|++
T Consensus 308 l~d~l~~aG~~ 318 (545)
T PRK11598 308 LLDIIQRAGIN 318 (545)
T ss_pred HHHHHHHcCCe
Confidence 44444555543
No 164
>PRK15083 PTS system mannitol-specific transporter subunit IICBA; Provisional
Probab=20.91 E-value=1.5e+03 Score=27.12 Aligned_cols=15 Identities=7% Similarity=-0.212 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHCCCc
Q 006257 345 ILLDLLRVISHHRAR 359 (653)
Q Consensus 345 I~~~Il~~~~~~GIe 359 (653)
+...+.+.+++++++
T Consensus 395 ~~~~l~~~l~~~~i~ 409 (639)
T PRK15083 395 GAGVLRKKVQDAGLS 409 (639)
T ss_pred HHHHHHHHHHHcCCC
Confidence 444677888888765
No 165
>COG0342 SecD Preprotein translocase subunit SecD [Intracellular trafficking and secretion]
Probab=20.81 E-value=3.8e+02 Score=31.21 Aligned_cols=29 Identities=28% Similarity=0.313 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Q 006257 157 WVASASLFMELLGFSTQKWLTAGGLGTVLLTLA 189 (653)
Q Consensus 157 ~ii~iiviL~~lGv~i~~lLa~lGi~glaiglA 189 (653)
.++.++.+|+.+|. -|+..|++|++++++
T Consensus 378 n~~lil~vls~lga----tLtLpgIAGiILtIG 406 (506)
T COG0342 378 NGVLILAVLSLLGA----TLTLPGIAGIILTIG 406 (506)
T ss_pred HHHHHHHHHHHhcc----cccchhhhHHHHhhh
Confidence 44444455555553 345556666666554
No 166
>PRK09579 multidrug efflux protein; Reviewed
Probab=20.70 E-value=1.8e+03 Score=28.05 Aligned_cols=36 Identities=8% Similarity=0.103 Sum_probs=28.9
Q ss_pred ceEEEEEEEeec-CCHHHHHHHHHHHHHHHHcCCCcc
Q 006257 267 HWRIKTHLAISH-LDVHKINSIVADMRKVLAKNPQVE 302 (653)
Q Consensus 267 ~~ri~v~l~I~y-td~eki~~l~e~L~e~L~s~p~v~ 302 (653)
...+.+.+..+. ++.++.++..+.+.+.++++|.+.
T Consensus 555 ~~~~~v~~~~p~gt~l~~t~~~~~~ie~~l~~~p~v~ 591 (1017)
T PRK09579 555 QGIIFMMSSSPQPANLDYLNAYTDEFTPIFKSFPEYY 591 (1017)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHHHHHhcCCCeE
Confidence 445667777777 899999999999999998887655
No 167
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=20.68 E-value=3.1e+02 Score=27.51 Aligned_cols=34 Identities=12% Similarity=0.004 Sum_probs=28.2
Q ss_pred HhCCchHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 006257 167 LLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSS 200 (653)
Q Consensus 167 ~lGv~i~~lLa~lGi~glaiglA~qd~l~Nl~aG 200 (653)
++|+|+--+++++++++.++|+.+..++.|.+=.
T Consensus 71 I~GlDP~~~~g~~t~a~g~lG~L~GP~~G~~vf~ 104 (173)
T PF08566_consen 71 IMGLDPFMVYGLATLACGALGWLVGPSLGNQVFR 104 (173)
T ss_pred ccCcCHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 5688888888888888999999999888887644
No 168
>PF14221 DUF4330: Domain of unknown function (DUF4330)
Probab=20.59 E-value=1.5e+02 Score=29.32 Aligned_cols=43 Identities=23% Similarity=0.257 Sum_probs=30.3
Q ss_pred ccCCcEEEEeecCCCeEE--EEEEEcceeeE-EEEecCCcEEEEecc
Q 006257 209 FVLNEWIQTKIEGYEVSG--TVEHVGWWSPT-IVRGEDREAVHIPNH 252 (653)
Q Consensus 209 FrVGD~I~Iki~~~~~~G--~VeeIgLrsTT-~Irt~dg~~V~IPNs 252 (653)
|+.||.+.+.+. +...| +|.++.....+ ...+.||+.+..|.-
T Consensus 72 ~~~gd~~~~~~r-nqp~G~v~V~~V~~~p~~~~~~~~dG~v~~~~dP 117 (168)
T PF14221_consen 72 IKEGDKTNIVIR-NQPAGQVTVKDVQVLPRTVVVPQPDGSVVEAPDP 117 (168)
T ss_pred ccCCCEEEEecc-CccccceEEEEEEEEccceEEECCCCeEEEccCC
Confidence 899999987433 45567 88888876523 334478988877754
No 169
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=20.54 E-value=1.2e+03 Score=29.49 Aligned_cols=11 Identities=27% Similarity=0.117 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 006257 68 SYIQPLMLWTG 78 (653)
Q Consensus 68 sl~~PL~l~i~ 78 (653)
.+.-|+.+...
T Consensus 909 ~~~iPl~~~g~ 919 (1051)
T TIGR00914 909 FTGIPFALTGG 919 (1051)
T ss_pred HHHHHHHHHHH
Confidence 34445544433
No 170
>PRK06298 type III secretion system protein; Validated
Probab=20.50 E-value=1.2e+03 Score=25.93 Aligned_cols=12 Identities=0% Similarity=-0.064 Sum_probs=5.9
Q ss_pred HHHHHHHHHCCC
Q 006257 347 LDLLRVISHHRA 358 (653)
Q Consensus 347 ~~Il~~~~~~GI 358 (653)
.+|++.-++|||
T Consensus 293 ~~Ir~iA~e~~V 304 (356)
T PRK06298 293 KRIIAEAEKYGV 304 (356)
T ss_pred HHHHHHHHHcCC
Confidence 344455555554
No 171
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=20.49 E-value=9.2e+02 Score=24.62 Aligned_cols=35 Identities=17% Similarity=0.467 Sum_probs=26.0
Q ss_pred ceEEEEEEEeec-CCHHHHHHHHHHHHHHHHc-CCCc
Q 006257 267 HWRIKTHLAISH-LDVHKINSIVADMRKVLAK-NPQV 301 (653)
Q Consensus 267 ~~ri~v~l~I~y-td~eki~~l~e~L~e~L~s-~p~v 301 (653)
...+.+++.++- .+.++..++.+.+++.+++ .|.+
T Consensus 222 ~~~v~~~v~v~~~~~~~~ah~i~~~i~~~i~~~~~~v 258 (268)
T TIGR01297 222 KLFLDVHVVVDPDLDLKQAHDIALEIEREILKRHPGI 258 (268)
T ss_pred CEEEEEEEEECCCCChhHHHHHHHHHHHHHHHhcCCC
Confidence 456778888887 6888888888888876654 3654
No 172
>PF14402 7TM_transglut: 7 transmembrane helices usually fused to an inactive transglutaminase
Probab=20.48 E-value=9.7e+02 Score=26.29 Aligned_cols=25 Identities=12% Similarity=0.061 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HhCCc
Q 006257 147 FAGKAVYSAVWVASASLFME----LLGFS 171 (653)
Q Consensus 147 ~i~~li~v~i~ii~iiviL~----~lGv~ 171 (653)
++.|+..+++.++.++.+++ .+|++
T Consensus 190 lV~RisaVli~VI~ii~~~sv~~~klGl~ 218 (313)
T PF14402_consen 190 LVPRISAVLIVVILIIAAFSVLSYKLGLE 218 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 34455444444444443333 35555
No 173
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=20.42 E-value=1.6e+03 Score=27.37 Aligned_cols=42 Identities=10% Similarity=0.036 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Q 006257 146 QFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTL 188 (653)
Q Consensus 146 ~~i~~li~v~i~ii~iiviL~~lGv~i~~lLa~lGi~glaigl 188 (653)
.++..+..+++..+++..++.. .+.++.++|.-.+.+-..+.
T Consensus 384 ~~l~~l~~v~iL~~G~~lVl~~-~lTlG~LiAf~~l~~~f~~p 425 (709)
T COG2274 384 SLLQQLSSVLILWFGAILVLEG-ELTLGQLVAFNMLAGYFISP 425 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhH
Confidence 3444444444554554444433 66677777776666555443
No 174
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=20.30 E-value=97 Score=25.05 Aligned_cols=23 Identities=30% Similarity=0.257 Sum_probs=17.7
Q ss_pred ccCCcEEEEeecCCCeEEEEEEEcc
Q 006257 209 FVLNEWIQTKIEGYEVSGTVEHVGW 233 (653)
Q Consensus 209 FrVGD~I~Iki~~~~~~G~VeeIgL 233 (653)
|++||.|++| .|+-.-+|..++-
T Consensus 1 f~~GDvV~LK--SGGp~MTV~~v~~ 23 (53)
T PF09926_consen 1 FKIGDVVQLK--SGGPRMTVTEVGP 23 (53)
T ss_pred CCCCCEEEEc--cCCCCeEEEEccc
Confidence 7999999984 3567778887743
No 175
>cd04466 S1_YloQ_GTPase S1_YloQ_GTPase: YloQ GTase family (also known as YjeQ and CpgA), S1-like RNA-binding domain. Proteins in the YloQ GTase family bind the ribosome and have GTPase activity. The precise role of this family is unknown. The protein structure is composed of three domains: an N-terminal S1 domain, a central GTPase domain, and a C-terminal zinc finger domain. This N-terminal S1 domain binds ssRNA. The central GTPase domain contains nucleotide-binding signature motifs: G1 (walker A), G3 (walker B) and G4 motifs. Experiments show that the bacterial YloQ and YjeQ proteins have low intrinsic GTPase activity. The C-terminal zinc-finger domain has structural similarity to a portion of the DNA-repair protein Rad51. This suggests a possible role for this GTPase as a regulator of translation, perhaps as a translation initiation factor. This family is classified based on the N-terminal S1 domain.
Probab=20.02 E-value=1.8e+02 Score=23.38 Aligned_cols=31 Identities=13% Similarity=0.249 Sum_probs=20.6
Q ss_pred CCccCCcEEEEeecCCCeEEEEEEEcceeeEEE
Q 006257 207 RPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIV 239 (653)
Q Consensus 207 rPFrVGD~I~Iki~~~~~~G~VeeIgLrsTT~I 239 (653)
....+||||.+...+ +..|.|+++--|. +.|
T Consensus 36 ~~~~VGD~V~~~~~~-~~~~~I~~vl~R~-s~l 66 (68)
T cd04466 36 NPPAVGDRVEFEPED-DGEGVIEEILPRK-NLL 66 (68)
T ss_pred CCCCCCcEEEEEECC-CCcEEEEEEeccc-eEE
Confidence 356899999873322 3457888887776 443
Done!