Query 006257
Match_columns 653
No_of_seqs 284 out of 2170
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 20:11:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006257.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006257hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vv5_A MSCS, small-conductance 100.0 4.8E-43 1.6E-47 364.9 32.5 248 105-370 30-278 (286)
2 3udc_A Small-conductance mecha 100.0 6.9E-41 2.4E-45 348.4 37.5 215 143-371 63-278 (285)
3 3udc_A Small-conductance mecha 76.5 49 0.0017 33.5 14.9 31 285-316 250-280 (285)
4 2vv5_A MSCS, small-conductance 67.8 60 0.002 32.9 13.1 62 24-92 31-92 (286)
5 1nz9_A Transcription antitermi 60.8 22 0.00075 27.4 6.4 38 207-246 3-45 (58)
6 2e6z_A Transcription elongatio 60.0 10 0.00034 29.8 4.3 46 207-254 6-56 (59)
7 2do3_A Transcription elongatio 55.9 28 0.00097 28.5 6.3 44 205-249 14-59 (69)
8 3cnr_A Type IV fimbriae assemb 38.4 22 0.00076 31.8 3.5 23 195-217 27-50 (117)
9 4a2n_B Isoprenylcysteine carbo 27.4 2.1E+02 0.0073 27.2 8.7 21 172-192 73-93 (194)
10 3exz_A MAOC-like dehydratase; 26.7 1.3E+02 0.0045 27.0 6.8 16 202-217 85-100 (154)
11 3ip4_B Aspartyl/glutamyl-tRNA( 25.6 3.6E+02 0.012 29.7 11.0 154 195-365 84-246 (483)
12 3h0l_B Aspartyl/glutamyl-tRNA( 23.6 4.7E+02 0.016 28.7 11.5 151 195-361 86-245 (478)
13 3p8b_B Transcription antitermi 23.2 56 0.0019 29.9 3.5 28 206-234 89-118 (152)
14 4b6m_A Tubulin-specific chaper 20.2 89 0.0031 26.4 3.8 25 207-233 4-28 (84)
No 1
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=100.00 E-value=4.8e-43 Score=364.93 Aligned_cols=248 Identities=18% Similarity=0.255 Sum_probs=220.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Q 006257 105 NFVRSLSTVLAFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTV 184 (653)
Q Consensus 105 ~~l~siliIl~i~~~l~~li~~l~~~l~~~~~~~~~~~~~l~~i~~li~v~i~ii~iiviL~~lGv~i~~lLa~lGi~gl 184 (653)
+++.++ ++++++|++.+++..+.+.+..+.. .+.....++.+++++++++++++++|..+|++++++++++|++|+
T Consensus 30 ~i~~~~-~i~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~i~~i~~~~~l~~~gi~~~~l~a~~g~~g~ 105 (286)
T 2vv5_A 30 NIVAAL-AIIIVGLIIARMISNAVNRLMISRK---IDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGL 105 (286)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSTTHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 344434 3456788888888775544443322 234456789999999999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHhhhhhhccCCccCCcEEEEeecCCCeEEEEEEEcceeeEEEEecCCcEEEEeccccccCcEEeccC
Q 006257 185 LLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQ 264 (653)
Q Consensus 185 aiglA~qd~l~Nl~aGi~I~~~rPFrVGD~I~Iki~~~~~~G~VeeIgLrsTT~Irt~dg~~V~IPNs~L~s~~V~N~Sr 264 (653)
++|||+|++++|++||++|+++|||++||||++ ++.+|+|++|+||+ |++|++||+.++|||+.+.++.|+|||+
T Consensus 106 aig~a~q~~l~n~~sGi~i~~~~pf~vGD~I~i----~g~~G~V~~I~l~~-T~i~t~dg~~v~IPNs~l~~~~i~N~s~ 180 (286)
T 2vv5_A 106 VVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDL----GGVAGTVLSVQIFS-TTMRTADGKIIVIPNGKIIAGNIINFSR 180 (286)
T ss_dssp HHHHHHTHHHHHHHHHHHHHTTCSSCTTCEEES----SSCEEEEEEECSSE-EEEECTTSCEEEEEHHHHHTSCEEESSS
T ss_pred HHHHHHHHHHHHHHhhhHHHhcCCccCCCEEEE----CCEEEEEEEEEeEE-EEEEeCCCCEEEechHHHhhCceEECCC
Confidence 999999999999999999999999999999999 68999999999999 9999999999999999999999999999
Q ss_pred CCceEEEEEEEeec-CCHHHHHHHHHHHHHHHHcCCCccccccceEEEEeecCCCCceEEEEEEEEEecCChHHHHHHHH
Q 006257 265 KSHWRIKTHLAISH-LDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCVKE 343 (653)
Q Consensus 265 ~~~~ri~v~l~I~y-td~eki~~l~e~L~e~L~s~p~v~~~~~~P~V~v~~~~~~~ssl~i~V~~~v~~~~~~~~~~vr~ 343 (653)
.+.+|+.+.++++| +|++++++ .++++++++|.+..++ +|.|.+.++++ ++++++++||+++. +|+.+|+
T Consensus 181 ~~~~r~~~~v~v~y~~d~~~v~~---~l~~~~~~~~~vl~~p-~p~v~v~~~~~--~~i~~~v~~~~~~~---~~~~~~~ 251 (286)
T 2vv5_A 181 EPVRRNEFIIGVAYDSDIDQVKQ---ILTNIIQSEDRILKDR-EMTVRLNELGA--SSINFVVRVWSNSG---DLQNVYW 251 (286)
T ss_dssp SSEEEEEEEEEECTTSCHHHHHH---HHHHHHHHCTTBCTTS-CEEEEEEEECS--SSEEEEEEEEEETT---THHHHHH
T ss_pred CCcEEEEEEEEEcCCCCHHHHHH---HHHHHHHhCcccccCC-CCEEEEEEecC--CeEEEEEEEEEccc---hHHHHHH
Confidence 98889999999999 88888777 6888899999998887 78999999986 79999999999975 4689999
Q ss_pred HHHHHHHHHHHHCCCccCCCcEEEEEe
Q 006257 344 AILLDLLRVISHHRARLATPIRTVQKI 370 (653)
Q Consensus 344 ~I~~~Il~~~~~~GIeia~P~qtV~~~ 370 (653)
+++.+|+++|+++||++|||+|++++.
T Consensus 252 ~l~~~i~~~~~~~gI~ip~P~~~v~~~ 278 (286)
T 2vv5_A 252 DVLERIKREFDAAGISFPYPQMDVNFK 278 (286)
T ss_dssp HHHHHHHHHHHHHTCCCCCCEEEEEEE
T ss_pred HHHHHHHHHHHHCCCcCCCCceEEEec
Confidence 999999999999999999999999854
No 2
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=100.00 E-value=6.9e-41 Score=348.43 Aligned_cols=215 Identities=18% Similarity=0.268 Sum_probs=190.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhccCCccCCcEEEEeecCC
Q 006257 143 MGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGY 222 (653)
Q Consensus 143 ~~l~~i~~li~v~i~ii~iiviL~~lGv~i~~lLa~lGi~glaiglA~qd~l~Nl~aGi~I~~~rPFrVGD~I~Iki~~~ 222 (653)
....++.+++++++++++++++|..+|++++++++++|++|+++|||+|++++|++||++|+++|||++||||++ +
T Consensus 63 tl~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~l~a~~g~~g~aig~a~q~~l~n~~~Gi~i~~~~pf~vGD~I~i----~ 138 (285)
T 3udc_A 63 TLTSLTKNAVRYIIYFLAGASILKLFNIDMTSLLAVAGIGSLAIGFGAQNLVKDMISGFFIIFEDQFSVGDYVTI----N 138 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTSCCTTCEEEE----T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccCCCEEEE----C
Confidence 456789999999999999999999999999999999999999999999999999999999999999999999999 7
Q ss_pred CeEEEEEEEcceeeEEEEecCCcEEEEeccccccCcEEeccCCCceEEEEEEEeec-CCHHHHHHHHHHHHHHHHcCCCc
Q 006257 223 EVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISH-LDVHKINSIVADMRKVLAKNPQV 301 (653)
Q Consensus 223 ~~~G~VeeIgLrsTT~Irt~dg~~V~IPNs~L~s~~V~N~Sr~~~~ri~v~l~I~y-td~eki~~l~e~L~e~L~s~p~v 301 (653)
+.+|+|++|+||+ |++|++||+.++|||+.+ ..+.|||+.. .|..+.++++| +|.+++.++++++.+.+.+.+..
T Consensus 139 ~~~G~V~~I~l~~-T~i~t~d~~~v~iPN~~l--~~i~N~s~~~-~~~~~~v~v~~~~d~~~v~~~l~~i~~~~~~~~~~ 214 (285)
T 3udc_A 139 GISGTVEEIGLRV-TKIRGFSDGLHIIPNGEI--KMVTNLTKDS-MMAVVNIAFPIDEDVDKIIEGLQEICEEVKKSRDD 214 (285)
T ss_dssp TEEEEEEEECSSE-EEEEETTTEEEEEEGGGC--SCEEECSSSC-EEEEEEEEEETTSCHHHHHHHHHHHHHHHHHHCSS
T ss_pred CEEEEEEEeeeeE-EEEecCCCCEEEeccccc--ccccccCCCC-ceEEEEEeeecCCCHHHHHHHHHHHHHHHHhcccc
Confidence 8999999999999 999999999999999999 4599999854 55568999999 89999888776665555444333
Q ss_pred cccccceEEEEeecCCCCceEEEEEEEEEecCChHHHHHHHHHHHHHHHHHHHHCCCccCCCcEEEEEee
Q 006257 302 EQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIF 371 (653)
Q Consensus 302 ~~~~~~P~V~v~~~~~~~ssl~i~V~~~v~~~~~~~~~~vr~~I~~~Il~~~~~~GIeia~P~qtV~~~~ 371 (653)
..++ +|.+.+.++++ ++++++++||+++.+ ++.++++++.+|+++|+++||++|||+|+|++..
T Consensus 215 ~~~~-~~~v~~~~~~~--s~i~~~v~~~~~~~~---~~~~~~~l~~~I~~~f~~~gI~ipfP~~~v~~~~ 278 (285)
T 3udc_A 215 LIEG-PTVLGITDMQD--SKLVIMVYAKTQPMQ---KWAVERDIRYRVKKMFDQKNISFPYPQMDVNFKR 278 (285)
T ss_dssp BSSC-CEEEEEEEEET--TEEEEEEEEEESTTC---HHHHHHHHHHHHHHHHHHTTCCCCCCCCEEEEEE
T ss_pred cccC-cccccccccCC--CEEEEEEEEEECcch---HHHHHHHHHHHHHHHHHHCCCcCcCCCEEEEeCc
Confidence 3333 46788999986 799999999997654 5789999999999999999999999999999654
No 3
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=76.48 E-value=49 Score=33.48 Aligned_cols=31 Identities=10% Similarity=0.100 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHcCCCccccccceEEEEeecC
Q 006257 285 NSIVADMRKVLAKNPQVEQQRLHRRVFLDNIN 316 (653)
Q Consensus 285 ~~l~e~L~e~L~s~p~v~~~~~~P~V~v~~~~ 316 (653)
.++...+.+.++++.=-..-| +..+.+.+..
T Consensus 250 ~~l~~~I~~~f~~~gI~ipfP-~~~v~~~~~~ 280 (285)
T 3udc_A 250 RDIRYRVKKMFDQKNISFPYP-QMDVNFKRVK 280 (285)
T ss_dssp HHHHHHHHHHHHHTTCCCCCC-CCEEEEEEC-
T ss_pred HHHHHHHHHHHHHCCCcCcCC-CEEEEeCcCC
Confidence 345566667776654333333 3345555543
No 4
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=67.82 E-value=60 Score=32.92 Aligned_cols=62 Identities=18% Similarity=0.139 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccccCC
Q 006257 24 LVPGIAIIVFATWGLGPLMRQSRNLLLRKSDNSWKKSKTHHVMTSYIQPLMLWTGAILICRALDPVVLP 92 (653)
Q Consensus 24 llial~ill~a~~ll~~Llr~i~~~l~~r~~~~w~~~~~~~il~sl~~PL~l~i~li~i~~al~~l~lp 92 (653)
++.+++++++ +|++.++++.+++++.++. ..+. .+...+.+-+.++++++++..++..++++
T Consensus 31 i~~~~~i~~i-~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~i~~~~i~~i~~~~~l~~~gi~ 92 (286)
T 2vv5_A 31 IVAALAIIIV-GLIIARMISNAVNRLMISR--KIDA----TVADFLSALVRYGIIAFTLIAALGRVGVQ 92 (286)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHH--CSCH----HHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHhc--CCCh----HHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3444444433 4445555554444444432 1222 22223334444444445555555555544
No 5
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=60.79 E-value=22 Score=27.42 Aligned_cols=38 Identities=13% Similarity=0.155 Sum_probs=25.6
Q ss_pred CCccCCcEEEEeecC--CCeEEEEEEEcce---eeEEEEecCCcE
Q 006257 207 RPFVLNEWIQTKIEG--YEVSGTVEHVGWW---SPTIVRGEDREA 246 (653)
Q Consensus 207 rPFrVGD~I~Iki~~--~~~~G~VeeIgLr---sTT~Irt~dg~~ 246 (653)
-+|++||.|+| ++| .+..|.|+++..- . +...+.-|+.
T Consensus 3 ~~~~~Gd~V~V-~~Gpf~g~~g~v~~v~~~k~~v-~V~v~~~Gr~ 45 (58)
T 1nz9_A 3 VAFREGDQVRV-VSGPFADFTGTVTEINPERGKV-KVMVTIFGRE 45 (58)
T ss_dssp CSCCTTCEEEE-CSGGGTTCEEEEEEEETTTTEE-EEEEESSSSE
T ss_pred cccCCCCEEEE-eecCCCCcEEEEEEEcCCCCEE-EEEEEeCCCE
Confidence 37899999999 443 2688999999752 3 3334444444
No 6
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.99 E-value=10 Score=29.84 Aligned_cols=46 Identities=13% Similarity=0.268 Sum_probs=28.6
Q ss_pred CCccCCcEEEEeecC--CCeEEEEEEEcceeeEEEEe---cCCcEEEEecccc
Q 006257 207 RPFVLNEWIQTKIEG--YEVSGTVEHVGWWSPTIVRG---EDREAVHIPNHKF 254 (653)
Q Consensus 207 rPFrVGD~I~Iki~~--~~~~G~VeeIgLrsTT~Irt---~dg~~V~IPNs~L 254 (653)
-.|.+||.|+| ++| .+..|+|+++.--- .++.- .-.+.+-+|++.+
T Consensus 6 ~~f~~GD~V~V-~~Gpf~g~~G~V~evd~e~-v~V~v~~fg~~tpvel~~~qv 56 (59)
T 2e6z_A 6 SGFQPGDNVEV-CEGELINLQGKILSVDGNK-ITIMPKHEDLKDMLEFPAQEL 56 (59)
T ss_dssp SSCCTTSEEEE-CSSTTTTCEEEECCCBTTE-EEEEECCSSCCSCEEEETTTE
T ss_pred ccCCCCCEEEE-eecCCCCCEEEEEEEeCCE-EEEEEEecCCCceEEEcHHHE
Confidence 47999999999 333 45789999987643 33332 1133555555544
No 7
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=55.88 E-value=28 Score=28.51 Aligned_cols=44 Identities=11% Similarity=0.151 Sum_probs=29.2
Q ss_pred ccCCccCCcEEEEeecC--CCeEEEEEEEcceeeEEEEecCCcEEEE
Q 006257 205 ATRPFVLNEWIQTKIEG--YEVSGTVEHVGWWSPTIVRGEDREAVHI 249 (653)
Q Consensus 205 ~~rPFrVGD~I~Iki~~--~~~~G~VeeIgLrsTT~Irt~dg~~V~I 249 (653)
+.+-|++||.|+| +.| .+..|.|.++.=-..|.+-+..++.+.+
T Consensus 14 LrK~F~~GDHVkV-i~G~~~getGlVV~v~~d~v~v~SD~t~~Ei~V 59 (69)
T 2do3_A 14 LRKYFKMGDHVKV-IAGRFEGDTGLIVRVEENFVILFSDLTMHELKV 59 (69)
T ss_dssp CCSSCCTTCEEEE-SSSTTTTCEEEEEEECSSCEEEEESSSCSEEEE
T ss_pred ceeeccCCCeEEE-eccEEcCceEEEEEEeCCEEEEEeCCCCCEEEE
Confidence 4578999999999 544 4578999998644424554555544444
No 8
>3cnr_A Type IV fimbriae assembly protein; PILZ, xanthomonas citri, type IV pilus assembly, unknown function; HET: MSE; 1.90A {Xanthomonas axonopodis PV} PDB: 3dsg_A
Probab=38.41 E-value=22 Score=31.78 Aligned_cols=23 Identities=4% Similarity=0.144 Sum_probs=19.3
Q ss_pred HHHH-hhhhhhccCCccCCcEEEE
Q 006257 195 TNFL-SSAMIHATRPFVLNEWIQT 217 (653)
Q Consensus 195 ~Nl~-aGi~I~~~rPFrVGD~I~I 217 (653)
.||- +|++|-.++||.+||.|.+
T Consensus 27 ~~is~GGlFI~T~~~~~~G~~V~l 50 (117)
T 3cnr_A 27 PFVKGGGIFVPTPKRYMLGDEVFL 50 (117)
T ss_dssp TTBTTCEEEEECCSCCCTTCEEEE
T ss_pred cccCCCeEEEeeCCccCCCCEEEE
Confidence 3444 6799999999999999887
No 9
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans}
Probab=27.39 E-value=2.1e+02 Score=27.20 Aligned_cols=21 Identities=10% Similarity=-0.093 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhH
Q 006257 172 TQKWLTAGGLGTVLLTLAGRE 192 (653)
Q Consensus 172 i~~lLa~lGi~glaiglA~qd 192 (653)
....+..+|++-.++|+++.-
T Consensus 73 ~p~~~~~~G~~l~l~G~~l~~ 93 (194)
T 4a2n_B 73 LPDSIRLFALIVTFLNIGLFT 93 (194)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHH
Confidence 445555556655555555433
No 10
>3exz_A MAOC-like dehydratase; Q2RSA1_rhort, NESG, RRR103A, structur genomics, PSI-2, protein structure initiative; 2.30A {Rhodospirillum rubrum}
Probab=26.75 E-value=1.3e+02 Score=27.05 Aligned_cols=16 Identities=6% Similarity=0.030 Sum_probs=13.8
Q ss_pred hhhccCCccCCcEEEE
Q 006257 202 MIHATRPFVLNEWIQT 217 (653)
Q Consensus 202 ~I~~~rPFrVGD~I~I 217 (653)
-+-|.+|..+||.|.+
T Consensus 85 ~~rF~~PV~~GD~L~~ 100 (154)
T 3exz_A 85 ELSWPNPTRPGDELHV 100 (154)
T ss_dssp EEECSSCCCTTCEEEE
T ss_pred EEEEcCCCCCCCEEEE
Confidence 4668899999999986
No 11
>3ip4_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_B 2dqn_B* 2g5h_B 2g5i_B* 2f2a_B
Probab=25.57 E-value=3.6e+02 Score=29.70 Aligned_cols=154 Identities=11% Similarity=0.112 Sum_probs=98.4
Q ss_pred HHHHhhhhhh-ccCCccCCcEEEEeecCCCeEEEEEEEcceeeEEEEecCCcEEEEeccccccCcEEeccCCCceEEEEE
Q 006257 195 TNFLSSAMIH-ATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTH 273 (653)
Q Consensus 195 ~Nl~aGi~I~-~~rPFrVGD~I~Iki~~~~~~G~VeeIgLrsTT~Irt~dg~~V~IPNs~L~s~~V~N~Sr~~~~ri~v~ 273 (653)
.++=.|++|. ++.|+-.|=+|.+..+ |.-..|++.. ..+..+.|+.++-.+ .....|.|.+---+.+.
T Consensus 84 pDlPkgYQITQ~~~Pia~~G~l~i~~~-----~~~k~I~I~r-ihlEEDagK~~h~~~-----~slvD~NRaGvPLiEIV 152 (483)
T 3ip4_B 84 PDNPKAYQISQFDQPIGENGYIDIEVD-----GETKRIGITR-LHMEEDAGKSTHKGE-----YSLVDLNRQGTPLIEIV 152 (483)
T ss_dssp TTBTTSEEEECSSSCSEEEEEEEECSS-----SSCEEEEEEE-EEEEECCCEEEEETT-----EEEEECTTTTCEEEEEE
T ss_pred CCCCcCccccccccCeecCCEEEEEec-----CceEEEeEEE-EeecchhhhhccCCC-----ceEEecCCCCCceEEEe
Confidence 4455688874 7889999999998332 2236799998 999999999998643 46788888876666666
Q ss_pred EEeecCCHHHHHHHHHHHHHHHHcCCCcccccc--ceEEE----EeecCCCCceEEEEEEEEEecCChHHHHHHHHHHHH
Q 006257 274 LAISHLDVHKINSIVADMRKVLAKNPQVEQQRL--HRRVF----LDNINPENQALLILVSCFVKTSHHEEYLCVKEAILL 347 (653)
Q Consensus 274 l~I~ytd~eki~~l~e~L~e~L~s~p~v~~~~~--~P~V~----v~~~~~~~ssl~i~V~~~v~~~~~~~~~~vr~~I~~ 347 (653)
-.=+..+++.+.+.++.|+..|+...-...+.- .-+|- +...+.. .+.-++-+++- ..+..++..|..
T Consensus 153 TePd~~s~eeA~a~~~~L~~ilr~lgvsd~~meeGslR~DvNVSvr~~g~~----~~GtRvEiKNl--nS~~~v~~AI~y 226 (483)
T 3ip4_B 153 SEPDIRSPKEAYAYLEKLRSIIQYTGVSDVKMEEGSLRCDANISLRPYGQE----KFGTKAELKNL--NSFNYVRKGLEY 226 (483)
T ss_dssp ECSCBCSHHHHHHHHHHHHHHHHHHTSCCCCGGGTSEEEEEEEEEEETTSC----CCCCEEEEECC--CSHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcccCceEeeeeEeecCCCCC----CCcceEEEecc--cCHHHHHHHHHH
Confidence 666678899999999999998876532111110 11111 1111110 12234555554 335678888888
Q ss_pred HHHHHHH--HCCCccCCCcE
Q 006257 348 DLLRVIS--HHRARLATPIR 365 (653)
Q Consensus 348 ~Il~~~~--~~GIeia~P~q 365 (653)
++.+..+ +.|-++.-++|
T Consensus 227 Ei~RQ~~~le~Gg~v~qETR 246 (483)
T 3ip4_B 227 EEKRQEEELLNGGEIGQETR 246 (483)
T ss_dssp HHHHHHHHHHHTCCCCEEEE
T ss_pred HHHHHHHHHHcCCcEeccce
Confidence 8877664 45555544444
No 12
>3h0l_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_B 3h0r_B*
Probab=23.62 E-value=4.7e+02 Score=28.71 Aligned_cols=151 Identities=10% Similarity=0.148 Sum_probs=96.4
Q ss_pred HHHHhhhhhh-ccCCccCCcEEEEeecCCCeEEEEEEEcceeeEEEEecCCcEEEEeccccccCcEEeccCCCceEEEEE
Q 006257 195 TNFLSSAMIH-ATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTH 273 (653)
Q Consensus 195 ~Nl~aGi~I~-~~rPFrVGD~I~Iki~~~~~~G~VeeIgLrsTT~Irt~dg~~V~IPNs~L~s~~V~N~Sr~~~~ri~v~ 273 (653)
.++=.|++|. ++.|+-.|=+|.+..++ |....|++.. .++..+.|+.++-. +.....|.|.+---+.+.
T Consensus 86 pDlPkgYQITQ~~~Pia~~G~l~i~~~~----g~~k~I~I~r-ihlEEDagK~~h~~-----~~slvD~NRaGvPLiEIV 155 (478)
T 3h0l_B 86 PDLPKGYQISQYEKPLATNGWVELNLPN----GEKKKVRIRR-LHIEEDAGKNIHEG-----DKTLVDLNRAGTPLMEIV 155 (478)
T ss_dssp TTCTTSEEEEESSSCSEEEEEEEEECTT----SCEEEEEEEE-EEEEECCCEEEEET-----TEEEEECSSTTCEEEEEE
T ss_pred CCCCcccchhccccCeecCCEEEEEecC----CceEEEeeEE-EEecccccccccCC-----CceEEecCCCCCceEEEe
Confidence 3455688874 78899999999984332 3457899998 99999999999872 346778888776666665
Q ss_pred EEeecCCHHHHHHHHHHHHHHHHcCCCcccccc--ceEEE----EeecCCCCceEEEEEEEEEecCChHHHHHHHHHHHH
Q 006257 274 LAISHLDVHKINSIVADMRKVLAKNPQVEQQRL--HRRVF----LDNINPENQALLILVSCFVKTSHHEEYLCVKEAILL 347 (653)
Q Consensus 274 l~I~ytd~eki~~l~e~L~e~L~s~p~v~~~~~--~P~V~----v~~~~~~~ssl~i~V~~~v~~~~~~~~~~vr~~I~~ 347 (653)
-.=+..+++.+.+.++.|+..|+...-...+.- .-+|- +...+.. .+--++-+++- ..+..++..|..
T Consensus 156 TePd~~s~eeA~a~~~~L~~ilr~lgvsd~~meeGslR~DvNVSvr~~g~~----~~GtRvEiKNl--nS~~~v~~AI~y 229 (478)
T 3h0l_B 156 TEPDIRTPEEARLFLEKLRNIMRYAGVSKADMEKGQLRCDINVSIRPKGSK----EFGTRVEIKNV--NSFRFVQKALEY 229 (478)
T ss_dssp ECTTBCSHHHHHHHHHHHHHHHHHHTSCCCCGGGTSEEEEEEEEEEETTCC----SCCCCEEEECC--CSHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHhCcCccccccCceEeeeeEEeccCCCC----CCcceEEEecc--ccHHHHHHHHHH
Confidence 555667899999999999998876532222110 11111 1111110 02234445544 335678888888
Q ss_pred HHHHHHH--HCCCccC
Q 006257 348 DLLRVIS--HHRARLA 361 (653)
Q Consensus 348 ~Il~~~~--~~GIeia 361 (653)
++.+..+ +.|-++.
T Consensus 230 Ei~RQ~~~le~Gg~V~ 245 (478)
T 3h0l_B 230 EIERQINVVEEGGEVV 245 (478)
T ss_dssp HHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHcCCCee
Confidence 8777653 3565544
No 13
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=23.21 E-value=56 Score=29.91 Aligned_cols=28 Identities=11% Similarity=0.095 Sum_probs=21.4
Q ss_pred cCCccCCcEEEEeecC--CCeEEEEEEEcce
Q 006257 206 TRPFVLNEWIQTKIEG--YEVSGTVEHVGWW 234 (653)
Q Consensus 206 ~rPFrVGD~I~Iki~~--~~~~G~VeeIgLr 234 (653)
...|.+||+|+| ++| .+..|.|++++..
T Consensus 89 ~~~~~~Gd~VrI-~~Gpf~g~~g~V~~vd~~ 118 (152)
T 3p8b_B 89 VSGLEPGDLVEV-IAGPFKGQKAKVVKIDES 118 (152)
T ss_dssp TTTCCTTCEEEE-CSSTTTTCEEEEEEEETT
T ss_pred cccCCCCCEEEE-eeecCCCCEEEEEEEeCC
Confidence 347999999999 333 3578999999753
No 14
>4b6m_A Tubulin-specific chaperone, putative; structural protein; 1.59A {Trypanosoma brucei}
Probab=20.20 E-value=89 Score=26.41 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=19.4
Q ss_pred CCccCCcEEEEeecCCCeEEEEEEEcc
Q 006257 207 RPFVLNEWIQTKIEGYEVSGTVEHVGW 233 (653)
Q Consensus 207 rPFrVGD~I~Iki~~~~~~G~VeeIgL 233 (653)
+.++|||+|++ ..++..|+|.-||-
T Consensus 4 ~~i~vG~Rv~v--~~~~~~G~VryvG~ 28 (84)
T 4b6m_A 4 ETIHVGDRCLC--RPGDRLGSVRFVGR 28 (84)
T ss_dssp -CCCTTCEEEE--TTTTEEEEEEEEEE
T ss_pred cCcccCCEEEE--cCCCeEEEEEEEec
Confidence 46899999998 34567899998884
Done!