BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006262
(653 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QNF|A Chain A, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|B Chain B, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|C Chain C, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
Length = 954
Score = 366 bits (940), Expect = e-101, Method: Compositional matrix adjust.
Identities = 205/620 (33%), Positives = 332/620 (53%), Gaps = 57/620 (9%)
Query: 12 SQARLPKFAIPSYYDLYIKLDLVACTFSGNVNININIIEKTNFIVLNALELNVHEVLFTS 71
++ RLP++ IP +YDL I +L TF G + I + T+ I+L++ L +
Sbjct: 56 NKIRLPEYVIPVHYDLLIHANLTTLTFWGTTKVEITASQPTSTIILHSHHLQISRATLRK 115
Query: 72 SHNQEY--RPSDAIMDKDDEILVLVFDEPLAVGEGILRIIFY-GKLNEHTKGFYKCSYVE 128
+ P + E + L+ EPL VG +I Y G L+E GFYK +Y
Sbjct: 116 GAGERLSEEPLQVLEHPRQEQIALLAPEPLLVGLPYTVVIHYAGNLSETFHGFYKSTYRT 175
Query: 129 KEVK-KNMAVTQFEAVDARRCFPCWDEPALKATFKITLDIPSELTALSNMPILDE-KLNG 186
KE + + +A TQFE AR FPC+DEPA KA+F I + A+SNMP++ +
Sbjct: 176 KEGELRILASTQFEPTAARMAFPCFDEPAFKASFSIKIRREPRHLAISNMPLVKSVTVAE 235
Query: 187 NLKTVYFEESPVMSTYLVAFVVGLFDHIEDTTTNGVKVHVYCPVGKSSEGKHALDVAIKS 246
L +F+ + MSTYLVAF++ F+ + T +GVKV VY K ++ +ALD A+
Sbjct: 236 GLIEDHFDVTVKMSTYLVAFIISDFESVSKITKSGVKVSVYAVPDKINQADYALDAAVTL 295
Query: 247 LGIYTEFFSTPYPLPKLDMVAVSEFHAGAMENFGLIVYRENELLYNEKTSTANRKQIMAI 306
L Y ++FS PYPLPK D+ A+ +F +GAMEN+GL YRE+ LL++ + S+A+ K + +
Sbjct: 296 LEFYEDYFSIPYPLPKQDLAAIPDFQSGAMENWGLTTYRESALLFDAEKSSASSKLGITM 355
Query: 307 STSHEVAHQWFGNLVTMEWWTHLWLNEGFATWISYMATDIMFPEWKMWTQFLRQTSHGLR 366
+ +HE+AHQWFGNLVTMEWW LWLNEGFA ++ +++ + PE K+ F + +
Sbjct: 356 TVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSVTHPELKVGDYFFGKCFDAME 415
Query: 367 LDAQEQSHPIEVEVHRADEIDQVFDAISYNKGSAVIRMLQSYLGEDIFQKSLSLYMKKYA 426
+DA SHP+ V +I ++FD +SY+KG+ ++ ML+ YL D F+ + Y++K++
Sbjct: 416 VDALNSSHPVSTPVENPAQIREMFDDVSYDKGACILNMLREYLSADAFKSGIVQYLQKHS 475
Query: 427 WKNVETEDLWSVLSE---------------------------ESGINITSLMECWTKQKG 459
+KN + EDLW ++ + G+++ ++M WT QKG
Sbjct: 476 YKNTKNEDLWDSMASICPTDGVKGMDGFCSRSQHSSSSSHWHQEGVDVKTMMNTWTLQKG 535
Query: 460 HPVVYVNCKDNLLEFKQSQFV--SSGLQGDGR-WTIPITLSLGSYNNQRNFLLESQSQSV 516
P++ + + + KQ ++ S G G W +P+T + FLL++++ +
Sbjct: 536 FPLITITVRGRNVHMKQEHYMKGSDGAPDTGYLWHVPLTFITSKSDMVHRFLLKTKTDVL 595
Query: 517 DISEMLPSSDGKLCSFKECDETLWIKVNVEQSGFYRVIYDDE----LSARLRKAVENNCL 572
+LP +E WIK NV +G+Y V Y+D+ L+ L+ + +
Sbjct: 596 ----ILP------------EEVEWIKFNVGMNGYYIVHYEDDGWDSLTGLLKGT--HTAV 637
Query: 573 SAADKLGILDDMLALCQACK 592
S+ D+ ++++ L K
Sbjct: 638 SSNDRASLINNAFQLVSIGK 657
>pdb|2YD0|A Chain A, Crystal Structure Of The Soluble Domain Of Human
Endoplasmic Reticulum Aminopeptidase 1 Erap1
Length = 897
Score = 366 bits (940), Expect = e-101, Method: Compositional matrix adjust.
Identities = 205/620 (33%), Positives = 332/620 (53%), Gaps = 57/620 (9%)
Query: 12 SQARLPKFAIPSYYDLYIKLDLVACTFSGNVNININIIEKTNFIVLNALELNVHEVLFTS 71
++ RLP++ IP +YDL I +L TF G + I + T+ I+L++ L +
Sbjct: 5 NKIRLPEYVIPVHYDLLIHANLTTLTFWGTTKVEITASQPTSTIILHSHHLQISRATLRK 64
Query: 72 SHNQEY--RPSDAIMDKDDEILVLVFDEPLAVGEGILRIIFY-GKLNEHTKGFYKCSYVE 128
+ P + E + L+ EPL VG +I Y G L+E GFYK +Y
Sbjct: 65 GAGERLSEEPLQVLEHPRQEQIALLAPEPLLVGLPYTVVIHYAGNLSETFHGFYKSTYRT 124
Query: 129 KEVK-KNMAVTQFEAVDARRCFPCWDEPALKATFKITLDIPSELTALSNMPILDE-KLNG 186
KE + + +A TQFE AR FPC+DEPA KA+F I + A+SNMP++ +
Sbjct: 125 KEGELRILASTQFEPTAARMAFPCFDEPAFKASFSIKIRREPRHLAISNMPLVKSVTVAE 184
Query: 187 NLKTVYFEESPVMSTYLVAFVVGLFDHIEDTTTNGVKVHVYCPVGKSSEGKHALDVAIKS 246
L +F+ + MSTYLVAF++ F+ + T +GVKV VY K ++ +ALD A+
Sbjct: 185 GLIEDHFDVTVKMSTYLVAFIISDFESVSKITKSGVKVSVYAVPDKINQADYALDAAVTL 244
Query: 247 LGIYTEFFSTPYPLPKLDMVAVSEFHAGAMENFGLIVYRENELLYNEKTSTANRKQIMAI 306
L Y ++FS PYPLPK D+ A+ +F +GAMEN+GL YRE+ LL++ + S+A+ K + +
Sbjct: 245 LEFYEDYFSIPYPLPKQDLAAIPDFQSGAMENWGLTTYRESALLFDAEKSSASSKLGITM 304
Query: 307 STSHEVAHQWFGNLVTMEWWTHLWLNEGFATWISYMATDIMFPEWKMWTQFLRQTSHGLR 366
+ +HE+AHQWFGNLVTMEWW LWLNEGFA ++ +++ + PE K+ F + +
Sbjct: 305 TVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSVTHPELKVGDYFFGKCFDAME 364
Query: 367 LDAQEQSHPIEVEVHRADEIDQVFDAISYNKGSAVIRMLQSYLGEDIFQKSLSLYMKKYA 426
+DA SHP+ V +I ++FD +SY+KG+ ++ ML+ YL D F+ + Y++K++
Sbjct: 365 VDALNSSHPVSTPVENPAQIREMFDDVSYDKGACILNMLREYLSADAFKSGIVQYLQKHS 424
Query: 427 WKNVETEDLWSVLSE---------------------------ESGINITSLMECWTKQKG 459
+KN + EDLW ++ + G+++ ++M WT QKG
Sbjct: 425 YKNTKNEDLWDSMASICPTDGVKGMDGFCSRSQHSSSSSHWHQEGVDVKTMMNTWTLQKG 484
Query: 460 HPVVYVNCKDNLLEFKQSQFV--SSGLQGDGR-WTIPITLSLGSYNNQRNFLLESQSQSV 516
P++ + + + KQ ++ S G G W +P+T + FLL++++ +
Sbjct: 485 FPLITITVRGRNVHMKQEHYMKGSDGAPDTGYLWHVPLTFITSKSDMVHRFLLKTKTDVL 544
Query: 517 DISEMLPSSDGKLCSFKECDETLWIKVNVEQSGFYRVIYDDE----LSARLRKAVENNCL 572
+LP +E WIK NV +G+Y V Y+D+ L+ L+ + +
Sbjct: 545 ----ILP------------EEVEWIKFNVGMNGYYIVHYEDDGWDSLTGLLKGT--HTAV 586
Query: 573 SAADKLGILDDMLALCQACK 592
S+ D+ ++++ L K
Sbjct: 587 SSNDRASLINNAFQLVSIGK 606
>pdb|3MDJ|A Chain A, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|B Chain B, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|C Chain C, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
Length = 921
Score = 362 bits (930), Expect = e-100, Method: Compositional matrix adjust.
Identities = 203/620 (32%), Positives = 331/620 (53%), Gaps = 57/620 (9%)
Query: 12 SQARLPKFAIPSYYDLYIKLDLVACTFSGNVNININIIEKTNFIVLNALELNVHEVLFTS 71
++ RLP++ IP +YDL I +L TF G + I + T+ I+L++ L +
Sbjct: 14 NKIRLPEYVIPVHYDLLIHANLTTLTFWGTTKVEITASQPTSTIILHSHHLQISRATLRK 73
Query: 72 SHNQEY--RPSDAIMDKDDEILVLVFDEPLAVGEGILRIIFY-GKLNEHTKGFYKCSYVE 128
+ P + E + L+ EPL VG +I Y G L+E GFYK +Y
Sbjct: 74 GAGERLSEEPLQVLEHPRQEQIALLAPEPLLVGLPYTVVIHYAGNLSETFHGFYKSTYRT 133
Query: 129 KEVK-KNMAVTQFEAVDARRCFPCWDEPALKATFKITLDIPSELTALSNMPILDE-KLNG 186
KE + + +A TQFE AR FPC+DEPA KA+F I + A+SNMP++ +
Sbjct: 134 KEGELRILASTQFEPTAARMAFPCFDEPAFKASFSIKIRREPRHLAISNMPLVKSVTVAE 193
Query: 187 NLKTVYFEESPVMSTYLVAFVVGLFDHIEDTTTNGVKVHVYCPVGKSSEGKHALDVAIKS 246
L +F+ + MSTYLVAF++ F+ + T +GVKV VY K ++ +ALD A+
Sbjct: 194 GLIEDHFDVTVKMSTYLVAFIISDFESVSKITKSGVKVSVYAVPDKINQADYALDAAVTL 253
Query: 247 LGIYTEFFSTPYPLPKLDMVAVSEFHAGAMENFGLIVYRENELLYNEKTSTANRKQIMAI 306
L Y ++FS PYPLPK D+ A+ +F +GAMEN+GL YRE+ LL++ + S+A+ K + +
Sbjct: 254 LEFYEDYFSIPYPLPKQDLAAIPDFQSGAMENWGLTTYRESALLFDAEKSSASSKLDITM 313
Query: 307 STSHEVAHQWFGNLVTMEWWTHLWLNEGFATWISYMATDIMFPEWKMWTQFLRQTSHGLR 366
+ +HE+AHQWFGNLVTMEWW LWLNEGFA ++ +++ + PE K+ F + +
Sbjct: 314 TVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSVTHPELKVGDYFFGKCFDAME 373
Query: 367 LDAQEQSHPIEVEVHRADEIDQVFDAISYNKGSAVIRMLQSYLGEDIFQKSLSLYMKKYA 426
+DA SHP+ V +I ++FD +SY+KG+ ++ ML+ YL D F+ + Y++K++
Sbjct: 374 VDALNSSHPVSTPVENPAQIREMFDDVSYDKGACILNMLREYLSADAFKSGIVQYLQKHS 433
Query: 427 WKNVETEDLWSVLSE---------------------------ESGINITSLMECWTKQKG 459
+KN + EDLW ++ + +++ ++M WT Q+G
Sbjct: 434 YKNTKNEDLWDSMASICPTDGVKGMDGFCSRSQHSSSSSHWHQERVDVKTMMNTWTLQRG 493
Query: 460 HPVVYVNCKDNLLEFKQSQFV--SSGLQGDGR-WTIPITLSLGSYNNQRNFLLESQSQSV 516
P++ + + + KQ ++ S G G W +P+T + FLL++++ +
Sbjct: 494 FPLITITVRGRNVHMKQEHYMKGSDGAPDTGYLWHVPLTFITSKSDMVHRFLLKTKTDVL 553
Query: 517 DISEMLPSSDGKLCSFKECDETLWIKVNVEQSGFYRVIYDDE----LSARLRKAVENNCL 572
+LP +E WIK NV +G+Y V Y+D+ L+ L+ + +
Sbjct: 554 ----ILP------------EEVEWIKFNVGMNGYYIVHYEDDGWDSLTGLLKGT--HTAV 595
Query: 573 SAADKLGILDDMLALCQACK 592
S+ D+ ++++ L K
Sbjct: 596 SSNDRASLINNAFQLVSIGK 615
>pdb|3SE6|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
pdb|3SE6|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
Length = 967
Score = 348 bits (892), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 209/630 (33%), Positives = 329/630 (52%), Gaps = 65/630 (10%)
Query: 13 QARLPKFAIPSYYDLYIKLDLVACTFSGNVNININIIEKTNFIVLNALELNVHEVLFTSS 72
+ RLP IP +YDL++ +L + F + I + + T FI+L++ +L + S
Sbjct: 66 ELRLPSVVIPLHYDLFVHPNLTSLDFVASEKIEVLVSNATQFIILHSKDLEITNATLQSE 125
Query: 73 HNQEY-RPSDAI----MDKDDEILVLVFDEPLAVGEGILRIIFYGKLNEHTKGFYKCSY- 126
+ Y +P + ++I +LV ++ + + + F KL + +GFYK +Y
Sbjct: 126 EDSRYMKPGKELKVLSYPAHEQIALLVPEKLTPHLKYYVAMDFQAKLGDGFEGFYKSTYR 185
Query: 127 VEKEVKKNMAVTQFEAVDARRCFPCWDEPALKATFKITLDIPSELTALSNMPILDE-KLN 185
+ +AVT FE AR FPC+DEP KA F I + S ALSNMP + +L
Sbjct: 186 TLGGETRILAVTDFEPTQARMAFPCFDEPLFKANFSIKIRRESRHIALSNMPKVKTIELE 245
Query: 186 GNLKTVYFEESPVMSTYLVAFVVGLFDHIEDTTTNGVKVHVYCPVGKSSEGKHALDVAIK 245
G L +FE + MSTYLVA++V F + T++GVKV +Y K ++ +AL ++K
Sbjct: 246 GGLLEDHFETTVKMSTYLVAYIVCDFHSLSGFTSSGVKVSIYASPDKRNQTHYALQASLK 305
Query: 246 SLGIYTEFFSTPYPLPKLDMVAVSEFHAGAMENFGLIVYRENELLYNEKTSTANRKQIMA 305
L Y ++F YPL KLD++A+ +F GAMEN+GLI YRE LL++ KTS+A+ K +
Sbjct: 306 LLDFYEKYFDIYYPLSKLDLIAIPDFAPGAMENWGLITYRETSLLFDPKTSSASDKLWVT 365
Query: 306 ISTSHEVAHQWFGNLVTMEWWTHLWLNEGFATWISYMATDIMFPEWKMWTQFLRQTSHGL 365
+HE+AHQWFGNLVTMEWW +WLNEGFA ++ +A + +PE + FL +
Sbjct: 366 RVIAHELAHQWFGNLVTMEWWNDIWLNEGFAKYMELIAVNATYPELQFDDYFLNVCFEVI 425
Query: 366 RLDAQEQSHPIEVEVHRADEIDQVFDAISYNKGSAVIRMLQSYLGEDIFQKSLSLYMKKY 425
D+ S PI +I ++FD +SYNKG+ ++ ML+ +LGE+ FQK + Y+KK+
Sbjct: 426 TKDSLNSSRPISKPAETPTQIQEMFDEVSYNKGACILNMLKDFLGEEKFQKGIIQYLKKF 485
Query: 426 AWKNVETEDLWSVLSEE--------SGI-------------------NITSLMECWTKQK 458
+++N + +DLWS LS G+ + +M WT QK
Sbjct: 486 SYRNAKNDDLWSSLSNSCLESDFTSGGVCHSDPKMTSNMLAFLGENAEVKEMMTTWTLQK 545
Query: 459 GHPVVYVNCKDNLLEFKQSQFVSSGLQGDGRWT---------IPITLSLGSYNNQRNFLL 509
G P++ V L +Q +F+ Q D W IP+T S S N +L
Sbjct: 546 GIPLLVVKQDGCSLRLQQERFLQGVFQEDPEWRALQERYLWHIPLTYSTSSSNVIHRHIL 605
Query: 510 ESQSQSVDISEMLPSSDGKLCSFKECDETLWIKVNVEQSGFYRVIYD----DELSARLRK 565
+S++ ++D+ E +T W+K NV+ +G+Y V Y+ D+L +L +
Sbjct: 606 KSKTDTLDLPE----------------KTSWVKFNVDSNGYYIVHYEGHGWDQLITQLNQ 649
Query: 566 AVENNCLSAADKLGILDDMLALCQACKQPL 595
+ L D++G++ D+ L A + L
Sbjct: 650 --NHTLLRPKDRVGLIHDVFQLVGAGRLTL 677
>pdb|4E36|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
pdb|4E36|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
Length = 967
Score = 345 bits (886), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 208/630 (33%), Positives = 328/630 (52%), Gaps = 65/630 (10%)
Query: 13 QARLPKFAIPSYYDLYIKLDLVACTFSGNVNININIIEKTNFIVLNALELNVHEVLFTSS 72
+ RLP IP +YDL++ +L + F + I + + T FI+L++ +L + S
Sbjct: 66 ELRLPSVVIPLHYDLFVHPNLTSLDFVASEKIEVLVSNATQFIILHSKDLEITNATLQSE 125
Query: 73 HNQEY-RPSDAI----MDKDDEILVLVFDEPLAVGEGILRIIFYGKLNEHTKGFYKCSYV 127
+ Y +P + ++I +LV ++ + + + F KL + +GFYK +Y
Sbjct: 126 EDSRYMKPGKELKVLSYPAHEQIALLVPEKLTPHLKYYVAMDFQAKLGDGFEGFYKSTYR 185
Query: 128 E-KEVKKNMAVTQFEAVDARRCFPCWDEPALKATFKITLDIPSELTALSNMPILDE-KLN 185
+ +AVT FE AR FPC+DEP KA F I + S ALSNMP + +L
Sbjct: 186 TLGGETRILAVTDFEPTQARMAFPCFDEPLFKANFSIKIRRESRHIALSNMPKVKTIELE 245
Query: 186 GNLKTVYFEESPVMSTYLVAFVVGLFDHIEDTTTNGVKVHVYCPVGKSSEGKHALDVAIK 245
G L +FE + MSTYLVA++V F + T++GVKV +Y K ++ +AL ++K
Sbjct: 246 GGLLEDHFETTVKMSTYLVAYIVCDFHSLSGFTSSGVKVSIYASPDKRNQTHYALQASLK 305
Query: 246 SLGIYTEFFSTPYPLPKLDMVAVSEFHAGAMENFGLIVYRENELLYNEKTSTANRKQIMA 305
L Y ++F YPL KLD++A+ +F GAMEN+GLI YRE LL++ KTS+A+ K +
Sbjct: 306 LLDFYEKYFDIYYPLSKLDLIAIPDFAPGAMENWGLITYRETSLLFDPKTSSASDKLWVT 365
Query: 306 ISTSHEVAHQWFGNLVTMEWWTHLWLNEGFATWISYMATDIMFPEWKMWTQFLRQTSHGL 365
+HE+AHQWFGNLVTMEWW +WL EGFA ++ +A + +PE + FL +
Sbjct: 366 RVIAHELAHQWFGNLVTMEWWNDIWLKEGFAKYMELIAVNATYPELQFDDYFLNVCFEVI 425
Query: 366 RLDAQEQSHPIEVEVHRADEIDQVFDAISYNKGSAVIRMLQSYLGEDIFQKSLSLYMKKY 425
D+ S PI +I ++FD +SYNKG+ ++ ML+ +LGE+ FQK + Y+KK+
Sbjct: 426 TKDSLNSSRPISKPAETPTQIQEMFDEVSYNKGACILNMLKDFLGEEKFQKGIIQYLKKF 485
Query: 426 AWKNVETEDLWSVLSEE--------SGI-------------------NITSLMECWTKQK 458
+++N + +DLWS LS G+ + +M WT QK
Sbjct: 486 SYRNAKNDDLWSSLSNSCLESDFTSGGVCHSDPKMTSNMLAFLGENAEVKEMMTTWTLQK 545
Query: 459 GHPVVYVNCKDNLLEFKQSQFVSSGLQGDGRWT---------IPITLSLGSYNNQRNFLL 509
G P++ V L +Q +F+ Q D W IP+T S S N +L
Sbjct: 546 GIPLLVVKQDGCSLRLQQERFLQGVFQEDPEWRALQERYLWHIPLTYSTSSSNVIHRHIL 605
Query: 510 ESQSQSVDISEMLPSSDGKLCSFKECDETLWIKVNVEQSGFYRVIYD----DELSARLRK 565
+S++ ++D+ E +T W+K NV+ +G+Y V Y+ D+L +L +
Sbjct: 606 KSKTDTLDLPE----------------KTSWVKFNVDSNGYYIVHYEGHGWDQLITQLNQ 649
Query: 566 AVENNCLSAADKLGILDDMLALCQACKQPL 595
+ L D++G++ D+ L A + L
Sbjct: 650 --NHTLLRPKDRVGLIHDVFQLVGAGRLTL 677
>pdb|1Z1W|A Chain A, Crystal Structures Of The Tricorn Interacting Facor F3
From Thermoplasma Acidophilum, A Zinc Aminopeptidase In
Three Different Conformations
pdb|1Z5H|A Chain A, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
pdb|1Z5H|B Chain B, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
Length = 780
Score = 337 bits (865), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 197/578 (34%), Positives = 307/578 (53%), Gaps = 59/578 (10%)
Query: 25 YDLYIKLDLVACTFSGNVNININ---IIEKTNFIVLNALELNVHEVLFTSSHNQEYRPSD 81
YDL + D+ TF+G I + I+ + +N +++N + FT P D
Sbjct: 6 YDLTLDFDIQKRTFNGTETITADAGDIVLDAVGLQINWMKVNGRDTAFTYDGQTVRAPGD 65
Query: 82 AIMDKDDEILVLVFDEPLAVGEGILRIIFYGKLNEHTKGFYKCSYVEKEVKKNMAVTQFE 141
+ K + I F GK+++ G Y Y +E M T FE
Sbjct: 66 SQPQK-------------------IEISFAGKVSDSLSGIY---YAGRE--NGMITTHFE 101
Query: 142 AVDARRCFPCWDEPALKATFKITLDIPSELTALSNMPILDEKLNGNLKTVYFEESPVMST 201
A DARR FPC D PA KA F IT+ I + A+SNMP +++ K V F+++P MST
Sbjct: 102 ATDARRMFPCVDHPAYKAVFAITVVIDKDYDAISNMPPKRIEVS-ERKVVEFQDTPRMST 160
Query: 202 YLVAFVVGLFDHIEDTTTNGVKVHVYCPVGKSSEGKHALDVAIKSLGIYTEFFSTPYPLP 261
YL+ +G F + + + + + K K+ LD+A KS+ Y +F PY LP
Sbjct: 161 YLLYVGIGKFRYEYEKYRD---IDLILASLKDIRSKYPLDMARKSVEFYENYFGIPYALP 217
Query: 262 KLDMVAVSEFHAGAMENFGLIVYRENELLYNEKTSTANRKQIMAISTSHEVAHQWFGNLV 321
K+ +++V EF AGAMEN+G I +RE + E ++ ++ + +HE+AHQWFG+LV
Sbjct: 218 KMHLISVPEFGAGAMENWGAITFREIYMDIAENSAVTVKRNSANV-IAHEIAHQWFGDLV 276
Query: 322 TMEWWTHLWLNEGFATWISYMATDIMFPEWKMWTQF-LRQTSHGLRLDAQEQSHPIEVEV 380
TM+WW LWLNE FAT++SY D +FPEW W F + +TS LR D+ + +HPIEV+V
Sbjct: 277 TMKWWNDLWLNESFATFMSYKTMDTLFPEWSFWGDFFVSRTSGALRSDSLKNTHPIEVDV 336
Query: 381 HRADEIDQVFDAISYNKGSAVIRMLQSYLGEDIFQKSLSLYMKKYAWKNVETEDLWSVLS 440
DEI Q+FD ISY KG++++RM++ Y G + F+K +S Y+ + + N E DLW+ +
Sbjct: 337 RDPDEISQIFDEISYGKGASILRMIEDYAGYEEFRKGISKYLNDHKFGNAEGSDLWTAIE 396
Query: 441 EESGINITSLMECWTKQKGHPVVYVNCKDNLLEFKQSQFVSSGLQGDGRWTIPITLSLGS 500
+ SG + +ME W K G+PV+ + + Q++F+ +G + +GRW +P+ +
Sbjct: 397 DVSGKPVKRVMEYWIKNPGYPVIKLKRNGRKITMYQTRFLLNG-EEEGRWPVPVNIK--K 453
Query: 501 YNNQRNFLLESQSQSVDISEMLPSSDGKLCSFKECDETLWIKVNVEQSGFYRVIYDDELS 560
+ LLE ++ +DG IK+N + +GFYRV+YDD
Sbjct: 454 KDGVERILLEDEASI--------EADG------------LIKINADSAGFYRVLYDDATF 493
Query: 561 ARLRKAVENNCLSAADKLGILDDMLA-LCQACKQPLSY 597
+ + + LS D++G++DD+ A L P +Y
Sbjct: 494 SDVMGHYRD--LSPLDRIGLVDDLFAFLLSGHIDPETY 529
>pdb|3Q7J|A Chain A, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
pdb|3Q7J|B Chain B, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
Length = 780
Score = 337 bits (864), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 197/578 (34%), Positives = 307/578 (53%), Gaps = 59/578 (10%)
Query: 25 YDLYIKLDLVACTFSGNVNININ---IIEKTNFIVLNALELNVHEVLFTSSHNQEYRPSD 81
YDL + D+ TF+G I + I+ + +N +++N + FT P D
Sbjct: 6 YDLTLDFDIQKRTFNGTETITADAGDIVLDAVGLQINWMKVNGRDTAFTYDGQTVRAPGD 65
Query: 82 AIMDKDDEILVLVFDEPLAVGEGILRIIFYGKLNEHTKGFYKCSYVEKEVKKNMAVTQFE 141
+ K + I F GK+++ G Y Y +E M T F+
Sbjct: 66 SQPQK-------------------IEISFAGKVSDSLSGIY---YAGRE--NGMITTHFQ 101
Query: 142 AVDARRCFPCWDEPALKATFKITLDIPSELTALSNMPILDEKLNGNLKTVYFEESPVMST 201
A DARR FPC D PA KA F IT+ I + A+SNMP +++ K V F+++P MST
Sbjct: 102 ATDARRMFPCVDHPAYKAVFAITVVIDKDYDAISNMPPKRIEVS-ERKVVEFQDTPRMST 160
Query: 202 YLVAFVVGLFDHIEDTTTNGVKVHVYCPVGKSSEGKHALDVAIKSLGIYTEFFSTPYPLP 261
YL+ +G F + + + + + K K+ LD+A KS+ Y +F PY LP
Sbjct: 161 YLLYVGIGKFRYEYEKYRD---IDLILASLKDIRSKYPLDMARKSVEFYENYFGIPYALP 217
Query: 262 KLDMVAVSEFHAGAMENFGLIVYRENELLYNEKTSTANRKQIMAISTSHEVAHQWFGNLV 321
K+ +++V EF AGAMEN+G I +RE + E ++ ++ A +HE+AHQWFG+LV
Sbjct: 218 KMHLISVPEFGAGAMENWGAITFREIYMDIAENSAVTVKRN-SATVIAHEIAHQWFGDLV 276
Query: 322 TMEWWTHLWLNEGFATWISYMATDIMFPEWKMWTQF-LRQTSHGLRLDAQEQSHPIEVEV 380
TM+WW LWLNE FAT++SY D +FPEW W F + +TS LR D+ + +HPIEV+V
Sbjct: 277 TMKWWNDLWLNESFATFMSYKTMDTLFPEWSFWGDFFVSRTSGALRSDSLKNTHPIEVDV 336
Query: 381 HRADEIDQVFDAISYNKGSAVIRMLQSYLGEDIFQKSLSLYMKKYAWKNVETEDLWSVLS 440
DEI Q+FD ISY KG++++RM++ Y G + F+K +S Y+ + + N E DLW+ +
Sbjct: 337 RDPDEISQIFDEISYGKGASILRMIEDYAGYEEFRKGISKYLNDHKFGNAEGSDLWTAIE 396
Query: 441 EESGINITSLMECWTKQKGHPVVYVNCKDNLLEFKQSQFVSSGLQGDGRWTIPITLSLGS 500
+ SG + +ME W K G+PV+ + + Q++F+ +G + +GRW +P+ +
Sbjct: 397 DVSGKPVKRVMEYWIKNPGYPVIKLKRNGRKITMYQTRFLLNG-EEEGRWPVPVNIK--K 453
Query: 501 YNNQRNFLLESQSQSVDISEMLPSSDGKLCSFKECDETLWIKVNVEQSGFYRVIYDDELS 560
+ LLE ++ +DG IK+N + +GFYRV+YDD
Sbjct: 454 KDGVERILLEDEASI--------EADG------------LIKINADSAGFYRVLYDDATF 493
Query: 561 ARLRKAVENNCLSAADKLGILDDMLA-LCQACKQPLSY 597
+ + + LS D++G++DD+ A L P +Y
Sbjct: 494 SDVMGHYRD--LSPLDRIGLVDDLFAFLLSGHIDPETY 529
>pdb|4FYQ|A Chain A, Human Aminopeptidase N (Cd13)
pdb|4FYR|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Bestatin
pdb|4FYS|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Angiotensin
Iv
pdb|4FYT|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Amastatin
Length = 903
Score = 333 bits (853), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 206/627 (32%), Positives = 332/627 (52%), Gaps = 63/627 (10%)
Query: 15 RLPKFAIPSYYDLYIKLDLVA-----CTFSGNVNININIIEKTNFIVLNALELNV----- 64
RLP P Y + ++ L F G+ + E T+ I++++ +LN
Sbjct: 11 RLPNTLKPDSYRVTLRPYLTPNDRGLYVFKGSSTVRFTCKEATDVIIIHSKKLNYTLSQG 70
Query: 65 HEVLFTSSHNQEYRPSDAIMDKDD-----EILVLVFDEPLAVGEGI-LRIIFYGKLNEHT 118
H V+ + P D +DK + E LV+ L + F G+L +
Sbjct: 71 HRVVLRGVGGSQ--PPD--IDKTELVEPTEYLVVHLKGSLVKDSQYEMDSEFEGELADDL 126
Query: 119 KGFYKCSYVEKEVKKNMAVTQFEAVDARRCFPCWDEPALKATFKITLDIPSELTALSNM- 177
GFY+ Y+E V+K +A TQ +A DAR+ FPC+DEPA+KA F ITL P +LTALSNM
Sbjct: 127 AGFYRSEYMEGNVRKVVATTQMQAADARKSFPCFDEPAMKAEFNITLIHPKDLTALSNML 186
Query: 178 ---PILDEKLNGNLKTVYFEESPVMSTYLVAFVVGLFDHIEDTTTNGVKVHVYC-PVG-K 232
P + N F +P MSTYL+AF+V FD++E +NGV + ++ P
Sbjct: 187 PKGPSTPLPEDPNWNVTEFHTTPKMSTYLLAFIVSEFDYVEKQASNGVLIRIWARPSAIA 246
Query: 233 SSEGKHALDVAIKSLGIYTEFFSTPYPLPKLDMVAVSEFHAGAMENFGLIVYRENELLYN 292
+ G +AL+V L + + TPYPLPK D + + +F+AGAMEN+GL+ YREN LL++
Sbjct: 247 AGHGDYALNVTGPILNFFAGHYDTPYPLPKSDQIGLPDFNAGAMENWGLVTYRENSLLFD 306
Query: 293 EKTSTANRKQIMAISTSHEVAHQWFGNLVTMEWWTHLWLNEGFATWISYMATDIMFPEWK 352
+S+++ K+ + +HE+AHQWFGNLVT+EWW LWLNEGFA+++ Y+ D P W
Sbjct: 307 PLSSSSSNKERVVTVIAHELAHQWFGNLVTIEWWNDLWLNEGFASYVEYLGADYAEPTWN 366
Query: 353 MWT-QFLRQTSHGLRLDAQEQSHPIEV---EVHRADEIDQVFDAISYNKGSAVIRMLQSY 408
+ L + +DA SHP+ E++ +I ++FDAISY+KG++V+RML S+
Sbjct: 367 LKDLMVLNDVYRVMAVDALASSHPLSTPASEINTPAQISELFDAISYSKGASVLRMLSSF 426
Query: 409 LGEDIFQKSLSLYMKKYAWKNVETEDLWSVLSE-------ESGINITSLMECWTKQKGHP 461
L ED+F++ L+ Y+ +A++N +LW L E + + +M WT Q G P
Sbjct: 427 LSEDVFKQGLASYLHTFAYQNTIYLNLWDHLQEAVNNRSIQLPTTVRDIMNRWTLQMGFP 486
Query: 462 VVYVNCKDNLLEFKQSQF-------VSSGLQGDGRWTIPITLSLGSYNNQRNFLLESQSQ 514
V+ V+ L Q F V+ + + W +PIT Q +L++ ++Q
Sbjct: 487 VITVDTSTGTL--SQEHFLLDPDSNVTRPSEFNYVWIVPITSIRDGRQQQDYWLIDVRAQ 544
Query: 515 SVDISEMLPSSDGKLCSFKECDETLWIKVNVEQSGFYRVIYDDELSARLRKAVE--NNCL 572
+++ +S + W+ +N+ +G+YRV YD+E +++ ++ ++ +
Sbjct: 545 ----NDLFSTSGNE-----------WVLLNLNVTGYYRVNYDEENWRKIQTQLQRDHSAI 589
Query: 573 SAADKLGILDDMLALCQACKQPLSYLL 599
++ I++D L A K P++ L
Sbjct: 590 PVINRAQIINDAFNLASAHKVPVTLAL 616
>pdb|4H5H|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Cleaved Poly-Alanine
pdb|4HOM|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Substance P
Length = 908
Score = 323 bits (828), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 205/623 (32%), Positives = 335/623 (53%), Gaps = 54/623 (8%)
Query: 15 RLPKFAIPSYYDLYIKLDLVACT-----FSGNVNININIIEKTNFIVLNALELNV----H 65
RLP +P Y++ ++ L F G + E T+ I++++ +LN H
Sbjct: 9 RLPTTLLPDSYNVTLRPYLTPNADGLYIFKGKSIVRFLCQEPTDVIIIHSKKLNYTTQGH 68
Query: 66 EVLFTSSHNQEYRPSDAI-MDKDDEILVLVFDEPLAVGEGI-LRIIFYGKLNEHTKGFYK 123
V+ + + D + + E LV+ L G + F G+L + GFY+
Sbjct: 69 MVVLRGVGDSQVPEIDRTELVELTEYLVVHLKGSLQPGHMYEMESEFQGELADDLAGFYR 128
Query: 124 CSYVEKEVKKNMAVTQFEAVDARRCFPCWDEPALKATFKITLDIPSELTALSNMPILDEK 183
Y+E VKK +A TQ ++ DAR+ FPC+DEPA+KATF ITL P+ LTALSNMP
Sbjct: 129 SEYMEGNVKKVLATTQMQSTDARKSFPCFDEPAMKATFNITLIHPNNLTALSNMPPKGSS 188
Query: 184 L----NGNLKTVYFEESPVMSTYLVAFVVGLFDHIEDTTTNGVKVHVYCPVGKSSEGK-- 237
+ N FE +PVMSTYL+A++V F + +T NGV + ++ +EG
Sbjct: 189 TPLAEDPNWSVTEFETTPVMSTYLLAYIVSEFQSVNETAQNGVLIRIWARPNAIAEGHGM 248
Query: 238 HALDVAIKSLGIYTEFFSTPYPLPKLDMVAVSEFHAGAMENFGLIVYRENELLYNEKTST 297
+AL+V L + ++T YPLPK D +A+ +F+AGAMEN+GL+ YREN LL++ ++S+
Sbjct: 249 YALNVTGPILNFFANHYNTSYPLPKSDQIALPDFNAGAMENWGLVTYRENALLFDPQSSS 308
Query: 298 ANRKQIMAISTSHEVAHQWFGNLVTMEWWTHLWLNEGFATWISYMATDIMFPEWKMWTQF 357
+ K+ + +HE+AHQWFGNLVT+ WW LWLNEGFA+++ Y+ D P W +
Sbjct: 309 ISNKERVVTVIAHELAHQWFGNLVTLAWWNDLWLNEGFASYVEYLGADHAEPTWNLKDLI 368
Query: 358 LRQTSHG-LRLDAQEQSHPIEV---EVHRADEIDQVFDAISYNKGSAVIRMLQSYLGEDI 413
+ + + +DA SHP+ EV+ +I ++FD+ISY+KG++VIRML ++L ED+
Sbjct: 369 VPGDVYRVMAVDALASSHPLTTPAEEVNTPAQISEMFDSISYSKGASVIRMLSNFLTEDL 428
Query: 414 FQKSLSLYMKKYAWKNVETEDLWSVLSE----ESGI----NITSLMECWTKQKGHPVVYV 465
F++ L+ Y+ +A++N DLW L + ++ I + ++M+ WT Q G PV+ V
Sbjct: 429 FKEGLASYLHAFAYQNTTYLDLWEHLQKAVDAQTSIRLPDTVRAIMDRWTLQMGFPVITV 488
Query: 466 NCKDN-------LLEFKQSQFVSSGLQGDGRWTIPITLSLGSYNNQRNFLLESQSQSVDI 518
+ K LL+ + + SS D W +PI+ S+ + Q ++ L SQ+ +
Sbjct: 489 DTKTGNISQKHFLLDSESNVTRSSAF--DYLWIVPIS-SIKNGVMQDHYWLRDVSQAQND 545
Query: 519 SEMLPSSDGKLCSFKECDETLWIKVNVEQSGFYRVIYDDELSARLRKAVENN--CLSAAD 576
S D W+ +NV +G+++V YD++ ++ ++ N + +
Sbjct: 546 LFKTASDD-------------WVLLNVNVTGYFQVNYDEDNWRMIQHQLQTNLSVIPVIN 592
Query: 577 KLGILDDMLALCQACKQPLSYLL 599
+ ++ D L A P++ L
Sbjct: 593 RAQVIYDSFNLATAHMVPVTLAL 615
>pdb|4FKE|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N
pdb|4FKH|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Alanine
pdb|4FKK|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Bestatin
Length = 909
Score = 323 bits (828), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 205/623 (32%), Positives = 335/623 (53%), Gaps = 54/623 (8%)
Query: 15 RLPKFAIPSYYDLYIKLDLVACT-----FSGNVNININIIEKTNFIVLNALELNV----H 65
RLP +P Y++ ++ L F G + E T+ I++++ +LN H
Sbjct: 10 RLPTTLLPDSYNVTLRPYLTPNADGLYIFKGKSIVRFLCQEPTDVIIIHSKKLNYTTQGH 69
Query: 66 EVLFTSSHNQEYRPSDAI-MDKDDEILVLVFDEPLAVGEGI-LRIIFYGKLNEHTKGFYK 123
V+ + + D + + E LV+ L G + F G+L + GFY+
Sbjct: 70 MVVLRGVGDSQVPEIDRTELVELTEYLVVHLKGSLQPGHMYEMESEFQGELADDLAGFYR 129
Query: 124 CSYVEKEVKKNMAVTQFEAVDARRCFPCWDEPALKATFKITLDIPSELTALSNMPILDEK 183
Y+E VKK +A TQ ++ DAR+ FPC+DEPA+KATF ITL P+ LTALSNMP
Sbjct: 130 SEYMEGNVKKVLATTQMQSTDARKSFPCFDEPAMKATFNITLIHPNNLTALSNMPPKGSS 189
Query: 184 L----NGNLKTVYFEESPVMSTYLVAFVVGLFDHIEDTTTNGVKVHVYCPVGKSSEGK-- 237
+ N FE +PVMSTYL+A++V F + +T NGV + ++ +EG
Sbjct: 190 TPLAEDPNWSVTEFETTPVMSTYLLAYIVSEFQSVNETAQNGVLIRIWARPNAIAEGHGM 249
Query: 238 HALDVAIKSLGIYTEFFSTPYPLPKLDMVAVSEFHAGAMENFGLIVYRENELLYNEKTST 297
+AL+V L + ++T YPLPK D +A+ +F+AGAMEN+GL+ YREN LL++ ++S+
Sbjct: 250 YALNVTGPILNFFANHYNTSYPLPKSDQIALPDFNAGAMENWGLVTYRENALLFDPQSSS 309
Query: 298 ANRKQIMAISTSHEVAHQWFGNLVTMEWWTHLWLNEGFATWISYMATDIMFPEWKMWTQF 357
+ K+ + +HE+AHQWFGNLVT+ WW LWLNEGFA+++ Y+ D P W +
Sbjct: 310 ISNKERVVTVIAHELAHQWFGNLVTLAWWNDLWLNEGFASYVEYLGADHAEPTWNLKDLI 369
Query: 358 LRQTSHG-LRLDAQEQSHPIEV---EVHRADEIDQVFDAISYNKGSAVIRMLQSYLGEDI 413
+ + + +DA SHP+ EV+ +I ++FD+ISY+KG++VIRML ++L ED+
Sbjct: 370 VPGDVYRVMAVDALASSHPLTTPAEEVNTPAQISEMFDSISYSKGASVIRMLSNFLTEDL 429
Query: 414 FQKSLSLYMKKYAWKNVETEDLWSVLSE----ESGI----NITSLMECWTKQKGHPVVYV 465
F++ L+ Y+ +A++N DLW L + ++ I + ++M+ WT Q G PV+ V
Sbjct: 430 FKEGLASYLHAFAYQNTTYLDLWEHLQKAVDAQTSIRLPDTVRAIMDRWTLQMGFPVITV 489
Query: 466 NCKDN-------LLEFKQSQFVSSGLQGDGRWTIPITLSLGSYNNQRNFLLESQSQSVDI 518
+ K LL+ + + SS D W +PI+ S+ + Q ++ L SQ+ +
Sbjct: 490 DTKTGNISQKHFLLDSESNVTRSSAF--DYLWIVPIS-SIKNGVMQDHYWLRDVSQAQND 546
Query: 519 SEMLPSSDGKLCSFKECDETLWIKVNVEQSGFYRVIYDDELSARLRKAVENN--CLSAAD 576
S D W+ +NV +G+++V YD++ ++ ++ N + +
Sbjct: 547 LFKTASDD-------------WVLLNVNVTGYFQVNYDEDNWRMIQHQLQTNLSVIPVIN 593
Query: 577 KLGILDDMLALCQACKQPLSYLL 599
+ ++ D L A P++ L
Sbjct: 594 RAQVIYDSFNLATAHMVPVTLAL 616
>pdb|4F5C|A Chain A, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
pdb|4F5C|B Chain B, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
Length = 959
Score = 323 bits (828), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 206/633 (32%), Positives = 342/633 (54%), Gaps = 54/633 (8%)
Query: 5 LNRNQFKSQARLPKFAIPSYYDLYIKLDLVACT-----FSGNVNININIIEKTNFIVLNA 59
L++++ ++ RLP +P Y++ ++ L F G + E T+ I++++
Sbjct: 43 LDQSKPWNRYRLPTTLLPDSYNVTLRPYLTPNADGLYIFKGKSIVRFICQEPTDVIIIHS 102
Query: 60 LELNV----HEVLFTSSHNQEYRPSDAI-MDKDDEILVLVFDEPLAVGEGI-LRIIFYGK 113
+LN H V+ + + D + + E LV+ L G + F G+
Sbjct: 103 KKLNYTTQGHMVVLRGVGDSQVPEIDRTELVELTEYLVVHLKGSLQPGHMYEMESEFQGE 162
Query: 114 LNEHTKGFYKCSYVEKEVKKNMAVTQFEAVDARRCFPCWDEPALKATFKITLDIPSELTA 173
L + GFY+ Y+E VKK +A TQ ++ DAR+ FPC+DEPA+KATF ITL P+ LTA
Sbjct: 163 LADDLAGFYRSEYMEGNVKKVLATTQMQSTDARKSFPCFDEPAMKATFNITLIHPNNLTA 222
Query: 174 LSNMPILDEKL----NGNLKTVYFEESPVMSTYLVAFVVGLFDHIEDTTTNGVKVHVYCP 229
LSNMP + N FE +PVMSTYL+A++V F + +T NGV + ++
Sbjct: 223 LSNMPPKGSSTPLAEDPNWSVTEFETTPVMSTYLLAYIVSEFQSVNETAQNGVLIRIWAR 282
Query: 230 VGKSSEGK--HALDVAIKSLGIYTEFFSTPYPLPKLDMVAVSEFHAGAMENFGLIVYREN 287
+EG +AL+V L + ++T YPLPK D +A+ +F+AGAMEN+GL+ YREN
Sbjct: 283 PNAIAEGHGMYALNVTGPILNFFANHYNTSYPLPKSDQIALPDFNAGAMENWGLVTYREN 342
Query: 288 ELLYNEKTSTANRKQIMAISTSHEVAHQWFGNLVTMEWWTHLWLNEGFATWISYMATDIM 347
LL++ ++S+ + K+ + +HE+AHQWFGNLVT+ WW LWLNEGFA+++ Y+ D
Sbjct: 343 ALLFDPQSSSISNKERVVTVIAHELAHQWFGNLVTLAWWNDLWLNEGFASYVEYLGADHA 402
Query: 348 FPEWKMWTQFLRQTSHG-LRLDAQEQSHPIEV---EVHRADEIDQVFDAISYNKGSAVIR 403
P W + + + + +DA SHP+ EV+ +I ++FD+ISY+KG++VIR
Sbjct: 403 EPTWNLKDLIVPGDVYRVMAVDALASSHPLTTPAEEVNTPAQISEMFDSISYSKGASVIR 462
Query: 404 MLQSYLGEDIFQKSLSLYMKKYAWKNVETEDLWSVLSE----ESGI----NITSLMECWT 455
ML ++L ED+F++ L+ Y+ +A++N DLW L + ++ I + ++M+ WT
Sbjct: 463 MLSNFLTEDLFKEGLASYLHAFAYQNTTYLDLWEHLQKAVDAQTSIRLPDTVRAIMDRWT 522
Query: 456 KQKGHPVVYVNCKDN-------LLEFKQSQFVSSGLQGDGRWTIPITLSLGSYNNQRNFL 508
Q G PV+ V+ K LL+ + + SS D W +PI+ S+ + Q ++
Sbjct: 523 LQMGFPVITVDTKTGNISQKHFLLDSESNVTRSSAF--DYLWIVPIS-SIKNGVMQDHYW 579
Query: 509 LESQSQSVDISEMLPSSDGKLCSFKECDETLWIKVNVEQSGFYRVIYDDELSARLRKAVE 568
L SQ+ + S D W+ +NV +G+++V YD++ ++ ++
Sbjct: 580 LRDVSQAQNDLFKTASDD-------------WVLLNVNVTGYFQVNYDEDNWRMIQHQLQ 626
Query: 569 NN--CLSAADKLGILDDMLALCQACKQPLSYLL 599
N + ++ ++ D L A P++ L
Sbjct: 627 TNLSVIPVINRAQVIYDSFNLATAHMVPVTLAL 659
>pdb|4HOL|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Poly- Alanine
Length = 908
Score = 322 bits (825), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 204/623 (32%), Positives = 335/623 (53%), Gaps = 54/623 (8%)
Query: 15 RLPKFAIPSYYDLYIKLDLVACT-----FSGNVNININIIEKTNFIVLNALELNV----H 65
RLP +P Y++ ++ L F G + E T+ I++++ +LN H
Sbjct: 9 RLPTTLLPDSYNVTLRPYLTPNADGLYIFKGKSIVRFLCQEPTDVIIIHSKKLNYTTQGH 68
Query: 66 EVLFTSSHNQEYRPSDAI-MDKDDEILVLVFDEPLAVGEGI-LRIIFYGKLNEHTKGFYK 123
V+ + + D + + E LV+ L G + F G+L + GFY+
Sbjct: 69 MVVLRGVGDSQVPEIDRTELVELTEYLVVHLKGSLQPGHMYEMESEFQGELADDLAGFYR 128
Query: 124 CSYVEKEVKKNMAVTQFEAVDARRCFPCWDEPALKATFKITLDIPSELTALSNMPILDEK 183
Y+E VKK +A TQ ++ DAR+ FPC+DEPA+KATF ITL P+ LTALSNMP
Sbjct: 129 SEYMEGNVKKVLATTQMQSTDARKSFPCFDEPAMKATFNITLIHPNNLTALSNMPPKGSS 188
Query: 184 L----NGNLKTVYFEESPVMSTYLVAFVVGLFDHIEDTTTNGVKVHVYCPVGKSSEGK-- 237
+ N FE +PVMSTYL+A++V F + +T NGV + ++ +EG
Sbjct: 189 TPLAEDPNWSVTEFETTPVMSTYLLAYIVSEFQSVNETAQNGVLIRIWARPNAIAEGHGM 248
Query: 238 HALDVAIKSLGIYTEFFSTPYPLPKLDMVAVSEFHAGAMENFGLIVYRENELLYNEKTST 297
+AL+V L + ++T YPLPK D +A+ +F+AGAMEN+GL+ YREN LL++ ++S+
Sbjct: 249 YALNVTGPILNFFANHYNTSYPLPKSDQIALPDFNAGAMENWGLVTYRENALLFDPQSSS 308
Query: 298 ANRKQIMAISTSHEVAHQWFGNLVTMEWWTHLWLNEGFATWISYMATDIMFPEWKMWTQF 357
+ K+ + +H++AHQWFGNLVT+ WW LWLNEGFA+++ Y+ D P W +
Sbjct: 309 ISNKERVVTVIAHQLAHQWFGNLVTLAWWNDLWLNEGFASYVEYLGADHAEPTWNLKDLI 368
Query: 358 LRQTSHG-LRLDAQEQSHPIEV---EVHRADEIDQVFDAISYNKGSAVIRMLQSYLGEDI 413
+ + + +DA SHP+ EV+ +I ++FD+ISY+KG++VIRML ++L ED+
Sbjct: 369 VPGDVYRVMAVDALASSHPLTTPAEEVNTPAQISEMFDSISYSKGASVIRMLSNFLTEDL 428
Query: 414 FQKSLSLYMKKYAWKNVETEDLWSVLSE----ESGI----NITSLMECWTKQKGHPVVYV 465
F++ L+ Y+ +A++N DLW L + ++ I + ++M+ WT Q G PV+ V
Sbjct: 429 FKEGLASYLHAFAYQNTTYLDLWEHLQKAVDAQTSIRLPDTVRAIMDRWTLQMGFPVITV 488
Query: 466 NCKDN-------LLEFKQSQFVSSGLQGDGRWTIPITLSLGSYNNQRNFLLESQSQSVDI 518
+ K LL+ + + SS D W +PI+ S+ + Q ++ L SQ+ +
Sbjct: 489 DTKTGNISQKHFLLDSESNVTRSSAF--DYLWIVPIS-SIKNGVMQDHYWLRDVSQAQND 545
Query: 519 SEMLPSSDGKLCSFKECDETLWIKVNVEQSGFYRVIYDDELSARLRKAVENN--CLSAAD 576
S D W+ +NV +G+++V YD++ ++ ++ N + +
Sbjct: 546 LFKTASDD-------------WVLLNVNVTGYFQVNYDEDNWRMIQHQLQTNLSVIPVIN 592
Query: 577 KLGILDDMLALCQACKQPLSYLL 599
+ ++ D L A P++ L
Sbjct: 593 RAQVIYDSFNLATAHMVPVTLAL 615
>pdb|3EBG|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
pdb|3EBH|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
Complexed With Bestatin
Length = 889
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 108/378 (28%), Positives = 171/378 (45%), Gaps = 39/378 (10%)
Query: 108 IIFYGKLNEHTKGFYKCSYVEKEVKKNMAVTQFEAVDARRCFPCWDEPALKATFKITLDI 167
+I + + N G YK KN+ V+Q EA RR D P + A + +T+
Sbjct: 99 VIIHPETNYALTGLYKS--------KNIIVSQCEATGFRRITFFIDRPDMMAKYDVTVTA 150
Query: 168 PSEL--TALSNMPILDE-KLNGNLKTVYFEESPVMSTYLVAFVVGLFDHIEDT-----TT 219
E LSN ++E ++ G F + P+ YL A V G H+ T T
Sbjct: 151 DKEKYPVLLSNGDKVNEFEIPGGRHGARFNDPPLKPCYLFAVVAGDLKHLSATYITKYTK 210
Query: 220 NGVKVHVYCPVGKSSEGKHALDVAIKSLGIYTEFFSTPYPLPKLDMVAVSEFHAGAMENF 279
V+++V+ S+ + AL+ KS+ ++F Y L +L++VAVS+F+ GAMEN
Sbjct: 211 KKVELYVFSEEKYVSKLQWALECLKKSMAFDEDYFGLEYDLSRLNLVAVSDFNVGAMENK 270
Query: 280 GLIVYRENELLYNEKTSTANRKQIMAISTSHEVAHQWFGNLVTMEWWTHLWLNEGFATWI 339
GL ++ N LL ++K S + HE HQ+ GN VT+ W L L EG
Sbjct: 271 GLNIFNANSLLASKKNSIDFSYARILTVVGHEYFHQYTGNRVTLRDWFQLTLKEGLT--- 327
Query: 340 SYMATDIMFPEWKMWTQFLRQTSHGLRL-------DAQEQSHPIEVEVHRADEIDQVFDA 392
+ + +F E +M + SH L D+ SHPI E + + ++ +
Sbjct: 328 --VHRENLFSE-EMTKTVTTRLSHVDLLRSVQFLEDSSPLSHPIRPESYVS--MENFYTT 382
Query: 393 ISYNKGSAVIRMLQSYLGEDIFQKSLSLYMKKYAWKNVETEDL-------WSVLSEESGI 445
Y+KGS V+RM + LGE+ ++K +Y+KK ED + + ++
Sbjct: 383 TVYDKGSEVMRMYLTILGEEYYKKGFDIYIKKNDGNTATCEDFNYAMEQAYKMKKADNSA 442
Query: 446 NITSLMECWTKQKGHPVV 463
N+ + W Q G P V
Sbjct: 443 NLNQYL-LWFSQSGTPHV 459
>pdb|3Q43|A Chain A, X-Ray Crystal Structure Of Pfa-M1 Bound To Bestatin
Derivative 15
pdb|3Q44|A Chain A, X-Ray Crystal Structure Of Pfa-M1 Bound To Bestatin
Derivative 16
Length = 891
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 108/378 (28%), Positives = 171/378 (45%), Gaps = 39/378 (10%)
Query: 108 IIFYGKLNEHTKGFYKCSYVEKEVKKNMAVTQFEAVDARRCFPCWDEPALKATFKITLDI 167
+I + + N G YK KN+ V+Q EA RR D P + A + +T+
Sbjct: 100 VIIHPETNYALTGLYKS--------KNIIVSQCEATGFRRITFFIDRPDMMAKYDVTVTA 151
Query: 168 PSEL--TALSNMPILDE-KLNGNLKTVYFEESPVMSTYLVAFVVGLFDHIEDT-----TT 219
E LSN ++E ++ G F + P+ YL A V G H+ T T
Sbjct: 152 DKEKYPVLLSNGDKVNEFEIPGGRHGARFNDPPLKPCYLFAVVAGDLKHLSATYITKYTK 211
Query: 220 NGVKVHVYCPVGKSSEGKHALDVAIKSLGIYTEFFSTPYPLPKLDMVAVSEFHAGAMENF 279
V+++V+ S+ + AL+ KS+ ++F Y L +L++VAVS+F+ GAMEN
Sbjct: 212 KKVELYVFSEEKYVSKLQWALECLKKSMAFDEDYFGLEYDLSRLNLVAVSDFNVGAMENK 271
Query: 280 GLIVYRENELLYNEKTSTANRKQIMAISTSHEVAHQWFGNLVTMEWWTHLWLNEGFATWI 339
GL ++ N LL ++K S + HE HQ+ GN VT+ W L L EG
Sbjct: 272 GLNIFNANSLLASKKNSIDFSYARILTVVGHEYFHQYTGNRVTLRDWFQLTLKEGLT--- 328
Query: 340 SYMATDIMFPEWKMWTQFLRQTSHGLRL-------DAQEQSHPIEVEVHRADEIDQVFDA 392
+ + +F E +M + SH L D+ SHPI E + + ++ +
Sbjct: 329 --VHRENLFSE-EMTKTVTTRLSHVDLLRSVQFLEDSSPLSHPIRPESYVS--MENFYTT 383
Query: 393 ISYNKGSAVIRMLQSYLGEDIFQKSLSLYMKKYAWKNVETEDL-------WSVLSEESGI 445
Y+KGS V+RM + LGE+ ++K +Y+KK ED + + ++
Sbjct: 384 TVYDKGSEVMRMYLTILGEEYYKKGFDIYIKKNDGNTATCEDFNYAMEQAYKMKKADNSA 443
Query: 446 NITSLMECWTKQKGHPVV 463
N+ + W Q G P V
Sbjct: 444 NLNQYL-LWFSQSGTPHV 460
>pdb|3EBI|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
Complexed With The Phosphinate Dipeptide Analog
Length = 890
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 108/378 (28%), Positives = 171/378 (45%), Gaps = 39/378 (10%)
Query: 108 IIFYGKLNEHTKGFYKCSYVEKEVKKNMAVTQFEAVDARRCFPCWDEPALKATFKITLDI 167
+I + + N G YK KN+ V+Q EA RR D P + A + +T+
Sbjct: 100 VIIHPETNYALTGLYKS--------KNIIVSQCEATGFRRITFFIDRPDMMAKYDVTVTA 151
Query: 168 PSEL--TALSNMPILDE-KLNGNLKTVYFEESPVMSTYLVAFVVGLFDHIEDT-----TT 219
E LSN ++E ++ G F + P+ YL A V G H+ T T
Sbjct: 152 DKEKYPVLLSNGDKVNEFEIPGGRHGARFNDPPLKPCYLFAVVAGDLKHLSATYITKYTK 211
Query: 220 NGVKVHVYCPVGKSSEGKHALDVAIKSLGIYTEFFSTPYPLPKLDMVAVSEFHAGAMENF 279
V+++V+ S+ + AL+ KS+ ++F Y L +L++VAVS+F+ GAMEN
Sbjct: 212 KKVELYVFSEEKYVSKLQWALECLKKSMAFDEDYFGLEYDLSRLNLVAVSDFNVGAMENK 271
Query: 280 GLIVYRENELLYNEKTSTANRKQIMAISTSHEVAHQWFGNLVTMEWWTHLWLNEGFATWI 339
GL ++ N LL ++K S + HE HQ+ GN VT+ W L L EG
Sbjct: 272 GLNIFNANSLLASKKNSIDFSYARILTVVGHEYFHQYTGNRVTLRDWFQLTLKEGLT--- 328
Query: 340 SYMATDIMFPEWKMWTQFLRQTSHGLRL-------DAQEQSHPIEVEVHRADEIDQVFDA 392
+ + +F E +M + SH L D+ SHPI E + + ++ +
Sbjct: 329 --VHRENLFSE-EMTKTVTTRLSHVDLLRSVQFLEDSSPLSHPIRPESYVS--MENFYTT 383
Query: 393 ISYNKGSAVIRMLQSYLGEDIFQKSLSLYMKKYAWKNVETEDL-------WSVLSEESGI 445
Y+KGS V+RM + LGE+ ++K +Y+KK ED + + ++
Sbjct: 384 TVYDKGSEVMRMYLTILGEEYYKKGFDIYIKKNDGNTATCEDFNYAMEQAYKMKKADNSA 443
Query: 446 NITSLMECWTKQKGHPVV 463
N+ + W Q G P V
Sbjct: 444 NLNQYL-LWFSQSGTPHV 460
>pdb|3T8V|A Chain A, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
Length = 895
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 108/378 (28%), Positives = 170/378 (44%), Gaps = 39/378 (10%)
Query: 108 IIFYGKLNEHTKGFYKCSYVEKEVKKNMAVTQFEAVDARRCFPCWDEPALKATFKITLDI 167
+I + + N G YK KN+ V+Q EA RR D P + A + +T+
Sbjct: 99 VIIHPETNYALTGLYKS--------KNIIVSQCEATGFRRITFFIDRPDMMAKYDVTVTA 150
Query: 168 PSEL--TALSNMPILDE-KLNGNLKTVYFEESPVMSTYLVAFVVGLFDHIEDT-----TT 219
E LSN ++E ++ G F + P+ YL A V G H+ T T
Sbjct: 151 DKEKYPVLLSNGDKVNEFEIPGGRHGARFNDPPLKPCYLFAVVAGDLKHLSATYITKYTK 210
Query: 220 NGVKVHVYCPVGKSSEGKHALDVAIKSLGIYTEFFSTPYPLPKLDMVAVSEFHAGAMENF 279
V+++V+ S+ + AL+ KS+ ++F Y L +L++VAVS+F+ GAMEN
Sbjct: 211 KKVELYVFSEEKYVSKLQWALECLKKSMAFDEDYFGLEYDLSRLNLVAVSDFNVGAMENK 270
Query: 280 GLIVYRENELLYNEKTSTANRKQIMAISTSHEVAHQWFGNLVTMEWWTHLWLNEGFATWI 339
GL ++ N LL ++K S + HE HQ+ GN VT+ W L L EG
Sbjct: 271 GLNIFNANSLLASKKNSIDFSYARILTVVGHEYFHQYTGNRVTLRDWFQLTLKEGLT--- 327
Query: 340 SYMATDIMFPEWKMWTQFLRQTSHGLRL-------DAQEQSHPIEVEVHRADEIDQVFDA 392
+ + +F E +M + SH L D+ SHPI E + + + +
Sbjct: 328 --VHRENLFSE-EMTKTVTTRLSHVDLLRSVQFLEDSSPLSHPIRPESYVS--MANFYTT 382
Query: 393 ISYNKGSAVIRMLQSYLGEDIFQKSLSLYMKKYAWKNVETEDL-------WSVLSEESGI 445
Y+KGS V+RM + LGE+ ++K +Y+KK ED + + ++
Sbjct: 383 TVYDKGSEVMRMYLTILGEEYYKKGFDIYIKKNDGNTATCEDFNYAMEQAYKMKKADNSA 442
Query: 446 NITSLMECWTKQKGHPVV 463
N+ + W Q G P V
Sbjct: 443 NLNQYL-LWFSQSGTPHV 459
>pdb|2DQ6|A Chain A, Crystal Structure Of Aminopeptidase N From Escherichia
Coli
pdb|2DQM|A Chain A, Crystal Structure Of Aminopeptidase N Complexed With
Bestatin
pdb|2ZXG|A Chain A, Aminopeptidase N Complexed With The Aminophosphinic
Inhibitor Of Pl250, A Transition State Analogue
Length = 870
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 99/339 (29%), Positives = 144/339 (42%), Gaps = 17/339 (5%)
Query: 138 TQFEAVDARRCFPCWDEPALKATF--KITLDIPSELTALSNM-PILDEKLNGNLKTVYFE 194
TQ EA R D P + A F KI D LSN + +L V ++
Sbjct: 118 TQCEAEGFRHITYYLDRPDVLARFTTKIIADKIKYPFLLSNGNRVAQGELENGRHWVQWQ 177
Query: 195 ESPVMSTYLVAFVVGLFDHIEDTTTNG----VKVHVYCPVGKSSEGKHALDVAIKSLGIY 250
+ YL A V G FD + DT T V + +Y G A+ S+
Sbjct: 178 DPFPKPCYLFALVAGDFDVLRDTFTTRSGREVALELYVDRGNLDRAPWAMTSLKNSMKWD 237
Query: 251 TEFFSTPYPLPKLDMVAVSEFHAGAMENFGLIVYRENELLYNEKTSTANRKQIMAIST-- 308
E F Y L +VAV F+ GAMEN GL ++ +L +T TA K + I
Sbjct: 238 EERFGLEYDLDIYMIVAVDFFNMGAMENKGLNIFNSKYVL--ARTDTATDKDYLDIERVI 295
Query: 309 SHEVAHQWFGNLVTMEWWTHLWLNEGFATWISYMATDIMFPEWKMWTQFLRQTSHGLRL- 367
HE H W GN VT W L L EG + + + +R T GL+
Sbjct: 296 GHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDLGSRAVNRINNVR-TMRGLQFA 354
Query: 368 -DAQEQSHPIEVEVHRADEIDQVFDAISYNKGSAVIRMLQSYLGEDIFQKSLSLYMKKYA 426
DA +HPI ++ E++ + Y KG+ VIRM+ + LGE+ FQK + LY +++
Sbjct: 355 EDASPMAHPIRPDM--VIEMNNFYTLTVYEKGAEVIRMIHTLLGEENFQKGMQLYFERHD 412
Query: 427 WKNVETEDLWSVLSEESGINITSLMECWTKQKGHPVVYV 465
+D + + S ++++ W Q G P+V V
Sbjct: 413 GSAATCDDFVQAMEDASNVDLSHFRR-WYSQSGTPIVTV 450
>pdb|2HPO|A Chain A, Structure Of Aminopeptidase N From E. Coli Suggests A
Compartmentalized, Gated Active Site
pdb|2HPT|A Chain A, Crystal Structure Of E. Coli Pepn (Aminopeptidase N)in
Complex With Bestatin
pdb|3KED|A Chain A, Crystal Structure Of Aminopeptidase N In Complex With 2,4-
Diaminobutyric Acid
pdb|3B2P|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Arginine
pdb|3B2X|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Lysine
pdb|3B34|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Phenylalanine
pdb|3B37|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Tyrosine
pdb|3B3B|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Tryptophan
pdb|3QJX|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With L-Serine
Length = 891
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 99/339 (29%), Positives = 144/339 (42%), Gaps = 17/339 (5%)
Query: 138 TQFEAVDARRCFPCWDEPALKATF--KITLDIPSELTALSNM-PILDEKLNGNLKTVYFE 194
TQ EA R D P + A F KI D LSN + +L V ++
Sbjct: 139 TQCEAEGFRHITYYLDRPDVLARFTTKIIADKIKYPFLLSNGNRVAQGELENGRHWVQWQ 198
Query: 195 ESPVMSTYLVAFVVGLFDHIEDTTTNG----VKVHVYCPVGKSSEGKHALDVAIKSLGIY 250
+ YL A V G FD + DT T V + +Y G A+ S+
Sbjct: 199 DPFPKPCYLFALVAGDFDVLRDTFTTRSGREVALELYVDRGNLDRAPWAMTSLKNSMKWD 258
Query: 251 TEFFSTPYPLPKLDMVAVSEFHAGAMENFGLIVYRENELLYNEKTSTANRKQIMAIST-- 308
E F Y L +VAV F+ GAMEN GL ++ +L +T TA K + I
Sbjct: 259 EERFGLEYDLDIYMIVAVDFFNMGAMENKGLNIFNSKYVL--ARTDTATDKDYLDIERVI 316
Query: 309 SHEVAHQWFGNLVTMEWWTHLWLNEGFATWISYMATDIMFPEWKMWTQFLRQTSHGLRL- 367
HE H W GN VT W L L EG + + + +R T GL+
Sbjct: 317 GHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDLGSRAVNRINNVR-TMRGLQFA 375
Query: 368 -DAQEQSHPIEVEVHRADEIDQVFDAISYNKGSAVIRMLQSYLGEDIFQKSLSLYMKKYA 426
DA +HPI ++ E++ + Y KG+ VIRM+ + LGE+ FQK + LY +++
Sbjct: 376 EDASPMAHPIRPDM--VIEMNNFYTLTVYEKGAEVIRMIHTLLGEENFQKGMQLYFERHD 433
Query: 427 WKNVETEDLWSVLSEESGINITSLMECWTKQKGHPVVYV 465
+D + + S ++++ W Q G P+V V
Sbjct: 434 GSAATCDDFVQAMEDASNVDLSHFRR-WYSQSGTPIVTV 471
>pdb|3PUU|A Chain A, Crystal Structure Of Glu121gln Mutant Of E. Coli
Aminopeptidase N
Length = 891
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/272 (30%), Positives = 121/272 (44%), Gaps = 14/272 (5%)
Query: 202 YLVAFVVGLFDHIEDTTTNG----VKVHVYCPVGKSSEGKHALDVAIKSLGIYTEFFSTP 257
YL A V G FD + DT T V + +Y G A+ S+ E F
Sbjct: 206 YLFALVAGDFDVLRDTFTTRSGREVALELYVDRGNLDRAPWAMTSLKNSMKWDEERFGLE 265
Query: 258 YPLPKLDMVAVSEFHAGAMENFGLIVYRENELLYNEKTSTANRKQIMAIST--SHEVAHQ 315
Y L +VAV F+ GAMEN GL ++ +L +T TA K + I HE H
Sbjct: 266 YDLDIYMIVAVDFFNMGAMENKGLNIFNSKYVL--ARTDTATDKDYLDIERVIGHEYFHN 323
Query: 316 WFGNLVTMEWWTHLWLNEGFATWISYMATDIMFPEWKMWTQFLRQTSHGLRL--DAQEQS 373
W GN VT W L L EG + + + +R T GL+ DA +
Sbjct: 324 WTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDLGSRAVNRINNVR-TMRGLQFAEDASPMA 382
Query: 374 HPIEVEVHRADEIDQVFDAISYNKGSAVIRMLQSYLGEDIFQKSLSLYMKKYAWKNVETE 433
HPI ++ E++ + Y KG+ VIRM+ + LGE+ FQK + LY +++ +
Sbjct: 383 HPIRPDM--VIEMNNFYTLTVYEKGAEVIRMIHTLLGEENFQKGMQLYFERHDGSAATCD 440
Query: 434 DLWSVLSEESGINITSLMECWTKQKGHPVVYV 465
D + + S ++++ W Q G P+V V
Sbjct: 441 DFVQAMEDASNVDLSHFRR-WYSQSGTPIVTV 471
>pdb|2GTQ|A Chain A, Crystal Structure Of Aminopeptidase N From Human Pathogen
Neisseria Meningitidis
Length = 867
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 99/359 (27%), Positives = 155/359 (43%), Gaps = 25/359 (6%)
Query: 138 TQFEAVDARRCFPCWDEPALKATFKITL--DIPSELTALSNMPILDE-KLNGNLKTVYFE 194
TQ E R+ D P + + F T+ D LSN +D + + V +E
Sbjct: 114 TQCEPEGFRKITFYIDRPDVXSKFTTTIVADKKRYPVLLSNGNKIDGGEFSDGRHWVKWE 173
Query: 195 ESPVMSTYLVAFVVGLFDHIED--TTTNG--VKVHVYCPVGKSSEGKHALDVAIKSLGIY 250
+ +YL A V G ED TT +G VK+ Y + K + A++SL
Sbjct: 174 DPFSKPSYLFALVAGDLAVTEDYFTTXSGRNVKIEFYT----TEADKPKVGFAVESLKNA 229
Query: 251 TEF----FSTPYPLPKLDMVAVSEFHAGAMENFGLIVYRENELLYNEKTSTANRKQIMAI 306
++ F Y L +VAV +F+ GA EN GL ++ +L + +T+T + +
Sbjct: 230 XKWDETRFGLEYDLDIFXVVAVGDFNXGAXENKGLNIFNTKFVLADSRTATDTDFEGIES 289
Query: 307 STSHEVAHQWFGNLVTMEWWTHLWLNEGFATWISY-MATDIMFPEWKMW--TQFLRQTSH 363
HE H W GN VT W L L EG + + D + + LRQ H
Sbjct: 290 VVGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSGDRASRAVRRIENIRLLRQ--H 347
Query: 364 GLRLDAQEQSHPIEVEVHRADEIDQVFDAISYNKGSAVIRMLQSYLGEDIFQKSLSLYMK 423
DA +HP+ + +E + + Y KG+ V+R + LGE+ FQK LY +
Sbjct: 348 QFPEDAGPTAHPVRPASY--EEXNNFYTXTVYEKGAEVVRXYHTLLGEEGFQKGXKLYFQ 405
Query: 424 KYAWKNVETEDLWSVLSEESGINITSLMECWTKQKGHPVVYV--NCKDNLLEFKQSQFV 480
++ + V +D + ++ +GIN+ W Q G PV+ K+N+ E Q V
Sbjct: 406 RHDGQAVTCDDFRAAXADANGINLDQFA-LWYSQAGTPVLEAEGRLKNNIFELTVKQTV 463
>pdb|3U9W|A Chain A, Structure Of Human Leukotriene A4 Hydrolase In Complex
With Inhibitor Sc57461a
Length = 608
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 84/314 (26%), Positives = 142/314 (45%), Gaps = 40/314 (12%)
Query: 138 TQFEAVDARRCFPCWDEPALKATFKITLDIPSELTALSNMPILD----EKLNGNLKTVYF 193
+Q +A+ R PC D P++K T+ + +P EL AL + I D + + + K F
Sbjct: 131 SQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVALMSA-IRDGETPDPEDPSRKIYKF 189
Query: 194 EESPVMSTYLVAFVVGLFDHIE---DTTTNGVKVHVYCPVGKSSEGKHALDVAIKSLGIY 250
+ + YL+A VVG + + T K V + SE + L +A
Sbjct: 190 IQKVPIPCYLIALVVGALESRQIGPRTLVWSEKEQVEKSAYEFSETESMLKIA------- 242
Query: 251 TEFFSTPYPLPKLDMVAVS-EFHAGAMENFGLIVYRENELLYNEKTSTANRKQIMAISTS 309
E PY + D++ + F G MEN + + LL +K+ ++ +
Sbjct: 243 -EDLGGPYVWGQYDLLVLPPSFPYGGMEN-PCLTFVTPTLLAGDKS--------LSNVIA 292
Query: 310 HEVAHQWFGNLVTMEWWTHLWLNEGFATWISYMATDIMFPEWKMWTQFLRQTSHGLRLDA 369
HE++H W GNLVT + W H WLNEG ++ +F E +F + G +
Sbjct: 293 HEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGE-----KFRHFNALGGWGEL 347
Query: 370 QE------QSHPIEVEVHRADEIDQ--VFDAISYNKGSAVIRMLQSYL-GEDIFQKSLSL 420
Q ++HP V +ID + ++ Y KG A++ L+ L G +IF L
Sbjct: 348 QNSVKTFGETHPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKA 407
Query: 421 YMKKYAWKNVETED 434
Y++K+++K++ T+D
Sbjct: 408 YVEKFSYKSITTDD 421
>pdb|1HS6|A Chain A, Structure Of Leukotriene A4 Hydrolase Complexed With
Bestatin.
pdb|2VJ8|A Chain A, Complex Of Human Leukotriene A4 Hydrolase With A
Hydroxamic Acid Inhibitor
pdb|3FTS|A Chain A, Leukotriene A4 Hydrolase In Complex With Resveratrol
pdb|3FTU|A Chain A, Leukotriene A4 Hydrolase In Complex With
Dihydroresveratrol
pdb|3FTV|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment N-
(Pyridin-3-Ylmethyl)aniline
pdb|3FTW|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragments N-
(Pyridin-3-Ylmethyl)aniline And Acetate
pdb|3FTX|A Chain A, Leukotriene A4 Hydrolase In Complex With
Dihydroresveratrol And Bestatin
pdb|3FTY|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 3-
(Benzyloxy)pyridin-2-Amine
pdb|3FU0|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 4-(4-
Fluorobenzoyl)pyridine
pdb|3FU3|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 4-(2-
Amino-1,3-Thiazol-4-Yl)phenol
pdb|3FU5|A Chain A, Leukotriene A4 Hydrolase In Complex With (5-Thiophen-2-
Ylthiophen-2-Yl)methylamine
pdb|3FU6|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment (4-
Thiophen-2-Ylphenyl)methanamine
pdb|3FUD|A Chain A, Leukotriene A4 Hydrolase In Complex With N-Methyl-1-(2-
Thiophen-2-Ylphenyl)methanamine
pdb|3FUE|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Chloroindole And Bestatin
pdb|3FUF|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Fluoroindole And Bestatin
pdb|3FUH|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Hydroxyindole And Bestatin
pdb|3FUI|A Chain A, Leukotriene A4 Hydrolase In Complex With N-Benzyl-4-[(2r)-
Pyrrolidin-2-Ylmethoxy]aniline
pdb|3FUJ|A Chain A, Leukotriene A4 Hydrolase In Complex With
5-[2-(1h-Pyrrol-1- Yl)ethoxy]-1h-Indole
pdb|3FUK|A Chain A, Leukotriene A4 Hydrolase In Complex With 1-[2-(1h-Indol-5-
Yloxy)ethyl]piperidine-4-Carboxylic Acid
pdb|3FUM|A Chain A, Leukotriene A4 Hydrolase In Complex With
(R)-Pyridin-4-Yl[4-
(2-Pyrrolidin-1-Ylethoxy)phenyl]methanol
pdb|3FUN|A Chain A, Leukotriene A4 Hydrolase In Complex With {4-[(2r)-
Pyrrolidin-2-Ylmethoxy]phenyl}(4-Thiophen-3-Ylphenyl)
Methanone
pdb|3FH5|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor
(2r)-2-[(4- Benzylphenoxy)methyl]pyrrolidine.
pdb|3FH7|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor
4-[(2s)-2-{[4-(4-
Chlorophenoxy)phenoxy]methyl}pyrrolidin-1-Yl]butanoate.
pdb|3FH8|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor 1-[2-(4-
Benzylphenoxy)ethyl]pyrrolidine.
pdb|3FHE|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor N-[3-(4-
Benzylphenoxy)propyl]-N-Methyl-Beta-Alanine.
pdb|3FTZ|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment
2-(pyridin-3- Ylmethoxy)aniline
pdb|3FUL|A Chain A, Leukotriene A4 Hydrolase In Complex With
Pyridin-4-Yl[4-(2-Pyrrolidin-
1-Ylethoxy)phenyl]methanone
pdb|4DPR|A Chain A, Structure Of Human Leukotriene A4 Hydrolase In Complex
With Inhibitor Captopril
Length = 611
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 81/311 (26%), Positives = 141/311 (45%), Gaps = 34/311 (10%)
Query: 138 TQFEAVDARRCFPCWDEPALKATFKITLDIPSELTALSNMPILD----EKLNGNLKTVYF 193
+Q +A+ R PC D P++K T+ + +P EL AL + I D + + + K F
Sbjct: 134 SQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVALMSA-IRDGETPDPEDPSRKIYKF 192
Query: 194 EESPVMSTYLVAFVVGLFDHIEDTTTNGVKVHVYCPVGKSSEGKHALDVAIKSLGIYTEF 253
+ + YL+A VVG + + G + V+ + + + L I E
Sbjct: 193 IQKVPIPCYLIALVVGALE----SRQIGPRTLVWSEKEQVEKSAYEFSETESMLKI-AED 247
Query: 254 FSTPYPLPKLDMVAVS-EFHAGAMENFGLIVYRENELLYNEKTSTANRKQIMAISTSHEV 312
PY + D++ + F G MEN + + LL +K+ ++ +HE+
Sbjct: 248 LGGPYVWGQYDLLVLPPSFPYGGMEN-PCLTFVTPTLLAGDKS--------LSNVIAHEI 298
Query: 313 AHQWFGNLVTMEWWTHLWLNEGFATWISYMATDIMFPEWKMWTQFLRQTSHGLRLDAQE- 371
+H W GNLVT + W H WLNEG ++ +F E +F + G + Q
Sbjct: 299 SHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGE-----KFRHFNALGGWGELQNS 353
Query: 372 -----QSHPIEVEVHRADEIDQ--VFDAISYNKGSAVIRMLQSYL-GEDIFQKSLSLYMK 423
++HP V +ID + ++ Y KG A++ L+ L G +IF L Y++
Sbjct: 354 VKTFGETHPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVE 413
Query: 424 KYAWKNVETED 434
K+++K++ T+D
Sbjct: 414 KFSYKSITTDD 424
>pdb|1GW6|A Chain A, Structure Of Leukotriene A4 Hydrolase D375n Mutant
Length = 610
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 81/311 (26%), Positives = 141/311 (45%), Gaps = 34/311 (10%)
Query: 138 TQFEAVDARRCFPCWDEPALKATFKITLDIPSELTALSNMPILD----EKLNGNLKTVYF 193
+Q +A+ R PC D P++K T+ + +P EL AL + I D + + + K F
Sbjct: 133 SQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVALMSA-IRDGETPDPEDPSRKIYKF 191
Query: 194 EESPVMSTYLVAFVVGLFDHIEDTTTNGVKVHVYCPVGKSSEGKHALDVAIKSLGIYTEF 253
+ + YL+A VVG + + G + V+ + + + L I E
Sbjct: 192 IQKVPIPCYLIALVVGALE----SRQIGPRTLVWSEKEQVEKSAYEFSETESMLKI-AED 246
Query: 254 FSTPYPLPKLDMVAVS-EFHAGAMENFGLIVYRENELLYNEKTSTANRKQIMAISTSHEV 312
PY + D++ + F G MEN + + LL +K+ ++ +HE+
Sbjct: 247 LGGPYVWGQYDLLVLPPSFPYGGMEN-PCLTFVTPTLLAGDKS--------LSNVIAHEI 297
Query: 313 AHQWFGNLVTMEWWTHLWLNEGFATWISYMATDIMFPEWKMWTQFLRQTSHGLRLDAQE- 371
+H W GNLVT + W H WLNEG ++ +F E +F + G + Q
Sbjct: 298 SHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGE-----KFRHFNALGGWGELQNS 352
Query: 372 -----QSHPIEVEVHRADEIDQ--VFDAISYNKGSAVIRMLQSYL-GEDIFQKSLSLYMK 423
++HP V +ID + ++ Y KG A++ L+ L G +IF L Y++
Sbjct: 353 VKTFGETHPFTKLVVDLTDIDPNVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVE 412
Query: 424 KYAWKNVETED 434
K+++K++ T+D
Sbjct: 413 KFSYKSITTDD 423
>pdb|2R59|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor Rb3041
pdb|3B7R|L Chain L, Leukotriene A4 Hydrolase Complexed With Inhibitor Rb3040
pdb|3B7U|X Chain X, Leukotriene A4 Hydrolase Complexed With Kelatorphan
Length = 616
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 81/311 (26%), Positives = 141/311 (45%), Gaps = 34/311 (10%)
Query: 138 TQFEAVDARRCFPCWDEPALKATFKITLDIPSELTALSNMPILD----EKLNGNLKTVYF 193
+Q +A+ R PC D P++K T+ + +P EL AL + I D + + + K F
Sbjct: 139 SQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVALMSA-IRDGETPDPEDPSRKIYKF 197
Query: 194 EESPVMSTYLVAFVVGLFDHIEDTTTNGVKVHVYCPVGKSSEGKHALDVAIKSLGIYTEF 253
+ + YL+A VVG + + G + V+ + + + L I E
Sbjct: 198 IQKVPIPCYLIALVVGALE----SRQIGPRTLVWSEKEQVEKSAYEFSETESMLKI-AED 252
Query: 254 FSTPYPLPKLDMVAVS-EFHAGAMENFGLIVYRENELLYNEKTSTANRKQIMAISTSHEV 312
PY + D++ + F G MEN + + LL +K+ ++ +HE+
Sbjct: 253 LGGPYVWGQYDLLVLPPSFPYGGMEN-PCLTFVTPTLLAGDKS--------LSNVIAHEI 303
Query: 313 AHQWFGNLVTMEWWTHLWLNEGFATWISYMATDIMFPEWKMWTQFLRQTSHGLRLDAQE- 371
+H W GNLVT + W H WLNEG ++ +F E +F + G + Q
Sbjct: 304 SHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGE-----KFRHFNALGGWGELQNS 358
Query: 372 -----QSHPIEVEVHRADEIDQ--VFDAISYNKGSAVIRMLQSYL-GEDIFQKSLSLYMK 423
++HP V +ID + ++ Y KG A++ L+ L G +IF L Y++
Sbjct: 359 VKTFGETHPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVE 418
Query: 424 KYAWKNVETED 434
K+++K++ T+D
Sbjct: 419 KFSYKSITTDD 429
>pdb|3CHO|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With 2-Amino-N-[4-(Phenylmethoxy)phenyl]-Acetamide
pdb|3CHP|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With (3s)-3-Amino-4-Oxo-4-[(4-Phenylmethoxyphenyl)
Amino]butanoic Acid
pdb|3CHQ|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With N5-[4-(Phenylmethoxy)phenyl]-L-Glutamine
pdb|3CHR|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With 4-Amino-N-[4-(Phenylmethoxy)phenyl]-Butanamide
pdb|3CHS|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With (2s)-2-Amino-5-[[4-[(2s)-2-Hydroxy-2-Phenyl-
Ethoxy]phenyl]amino]-5-Oxo-Pentanoic Acid
Length = 610
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 81/311 (26%), Positives = 141/311 (45%), Gaps = 34/311 (10%)
Query: 138 TQFEAVDARRCFPCWDEPALKATFKITLDIPSELTALSNMPILD----EKLNGNLKTVYF 193
+Q +A+ R PC D P++K T+ + +P EL AL + I D + + + K F
Sbjct: 133 SQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVALMSA-IRDGETPDPEDPSRKIYKF 191
Query: 194 EESPVMSTYLVAFVVGLFDHIEDTTTNGVKVHVYCPVGKSSEGKHALDVAIKSLGIYTEF 253
+ + YL+A VVG + + G + V+ + + + L I E
Sbjct: 192 IQKVPIPCYLIALVVGALE----SRQIGPRTLVWSEKEQVEKSAYEFSETESMLKI-AED 246
Query: 254 FSTPYPLPKLDMVAVS-EFHAGAMENFGLIVYRENELLYNEKTSTANRKQIMAISTSHEV 312
PY + D++ + F G MEN + + LL +K+ ++ +HE+
Sbjct: 247 LGGPYVWGQYDLLVLPPSFPYGGMEN-PCLTFVTPTLLAGDKS--------LSNVIAHEI 297
Query: 313 AHQWFGNLVTMEWWTHLWLNEGFATWISYMATDIMFPEWKMWTQFLRQTSHGLRLDAQE- 371
+H W GNLVT + W H WLNEG ++ +F E +F + G + Q
Sbjct: 298 SHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGE-----KFRHFNALGGWGELQNS 352
Query: 372 -----QSHPIEVEVHRADEIDQ--VFDAISYNKGSAVIRMLQSYL-GEDIFQKSLSLYMK 423
++HP V +ID + ++ Y KG A++ L+ L G +IF L Y++
Sbjct: 353 VKTFGETHPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVE 412
Query: 424 KYAWKNVETED 434
K+++K++ T+D
Sbjct: 413 KFSYKSITTDD 423
>pdb|1SQM|A Chain A, Structure Of [r563a] Leukotriene A4 Hydrolase
Length = 610
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 84/314 (26%), Positives = 142/314 (45%), Gaps = 40/314 (12%)
Query: 138 TQFEAVDARRCFPCWDEPALKATFKITLDIPSELTALSNMPILD----EKLNGNLKTVYF 193
+Q +A+ R PC D P++K T+ + +P EL AL + I D + + + K F
Sbjct: 133 SQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVALMSA-IRDGETPDPEDPSRKIYKF 191
Query: 194 EESPVMSTYLVAFVVGLFDHIE---DTTTNGVKVHVYCPVGKSSEGKHALDVAIKSLGIY 250
+ + YL+A VVG + + T K V + SE + L +A
Sbjct: 192 IQKVPIPCYLIALVVGALESRQIGPRTLVWSEKEQVEKSAYEFSETESMLKIA------- 244
Query: 251 TEFFSTPYPLPKLDMVAVS-EFHAGAMENFGLIVYRENELLYNEKTSTANRKQIMAISTS 309
E PY + D++ + F G MEN + + LL +K+ ++ +
Sbjct: 245 -EDLGGPYVWGQYDLLVLPPSFPYGGMEN-PCLTFVTPTLLAGDKS--------LSNVIA 294
Query: 310 HEVAHQWFGNLVTMEWWTHLWLNEGFATWISYMATDIMFPEWKMWTQFLRQTSHGLRLDA 369
HE++H W GNLVT + W H WLNEG ++ +F E +F + G +
Sbjct: 295 HEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGE-----KFRHFNALGGWGEL 349
Query: 370 QE------QSHPIEVEVHRADEIDQ--VFDAISYNKGSAVIRMLQSYL-GEDIFQKSLSL 420
Q ++HP V +ID + ++ Y KG A++ L+ L G +IF L
Sbjct: 350 QNSVKTFGETHPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKA 409
Query: 421 YMKKYAWKNVETED 434
Y++K+++K++ T+D
Sbjct: 410 YVEKFSYKSITTDD 423
>pdb|1H19|A Chain A, Structure Of [e271q] Leukotriene A4 Hydrolase
Length = 611
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 83/314 (26%), Positives = 142/314 (45%), Gaps = 40/314 (12%)
Query: 138 TQFEAVDARRCFPCWDEPALKATFKITLDIPSELTALSNMPILD----EKLNGNLKTVYF 193
+Q +A+ R PC D P++K T+ + +P EL AL + I D + + + K F
Sbjct: 134 SQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVALMSA-IRDGETPDPEDPSRKIYKF 192
Query: 194 EESPVMSTYLVAFVVGLFDHIE---DTTTNGVKVHVYCPVGKSSEGKHALDVAIKSLGIY 250
+ + YL+A VVG + + T K V + SE + L +A
Sbjct: 193 IQKVPIPCYLIALVVGALESRQIGPRTLVWSEKEQVEKSAYEFSETESMLKIA------- 245
Query: 251 TEFFSTPYPLPKLDMVAVS-EFHAGAMENFGLIVYRENELLYNEKTSTANRKQIMAISTS 309
E PY + D++ + F G M+N + + LL +K+ ++ +
Sbjct: 246 -EDLGGPYVWGQYDLLVLPPSFPYGGMQN-PCLTFVTPTLLAGDKS--------LSNVIA 295
Query: 310 HEVAHQWFGNLVTMEWWTHLWLNEGFATWISYMATDIMFPEWKMWTQFLRQTSHGLRLDA 369
HE++H W GNLVT + W H WLNEG ++ +F E +F + G +
Sbjct: 296 HEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGE-----KFRHFNALGGWGEL 350
Query: 370 QE------QSHPIEVEVHRADEIDQ--VFDAISYNKGSAVIRMLQSYL-GEDIFQKSLSL 420
Q ++HP V +ID + ++ Y KG A++ L+ L G +IF L
Sbjct: 351 QNSVKTFGETHPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKA 410
Query: 421 YMKKYAWKNVETED 434
Y++K+++K++ T+D
Sbjct: 411 YVEKFSYKSITTDD 424
>pdb|3B7S|A Chain A, [e296q]lta4h In Complex With Rsr Substrate
pdb|3B7T|A Chain A, [e296q]lta4h In Complex With Arg-Ala-Arg Substrate
Length = 616
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 83/314 (26%), Positives = 142/314 (45%), Gaps = 40/314 (12%)
Query: 138 TQFEAVDARRCFPCWDEPALKATFKITLDIPSELTALSNMPILD----EKLNGNLKTVYF 193
+Q +A+ R PC D P++K T+ + +P EL AL + I D + + + K F
Sbjct: 139 SQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVALMSA-IRDGETPDPEDPSRKIYKF 197
Query: 194 EESPVMSTYLVAFVVGLFDHIE---DTTTNGVKVHVYCPVGKSSEGKHALDVAIKSLGIY 250
+ + YL+A VVG + + T K V + SE + L +A
Sbjct: 198 IQKVPIPCYLIALVVGALESRQIGPRTLVWSEKEQVEKSAYEFSETESMLKIA------- 250
Query: 251 TEFFSTPYPLPKLDMVAVS-EFHAGAMENFGLIVYRENELLYNEKTSTANRKQIMAISTS 309
E PY + D++ + F G MEN + + LL +K+ ++ +
Sbjct: 251 -EDLGGPYVWGQYDLLVLPPSFPYGGMEN-PCLTFVTPTLLAGDKS--------LSNVIA 300
Query: 310 HEVAHQWFGNLVTMEWWTHLWLNEGFATWISYMATDIMFPEWKMWTQFLRQTSHGLRLDA 369
H+++H W GNLVT + W H WLNEG ++ +F E +F + G +
Sbjct: 301 HQISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGE-----KFRHFNALGGWGEL 355
Query: 370 QE------QSHPIEVEVHRADEIDQ--VFDAISYNKGSAVIRMLQSYL-GEDIFQKSLSL 420
Q ++HP V +ID + ++ Y KG A++ L+ L G +IF L
Sbjct: 356 QNSVKTFGETHPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKA 415
Query: 421 YMKKYAWKNVETED 434
Y++K+++K++ T+D
Sbjct: 416 YVEKFSYKSITTDD 429
>pdb|3CIA|A Chain A, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|B Chain B, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|C Chain C, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|D Chain D, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
Length = 605
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 98/421 (23%), Positives = 175/421 (41%), Gaps = 35/421 (8%)
Query: 24 YYDLYIKLDLVACTFSGNVNININ-IIEKTNFIVLNALELNVHEVLFTSSHNQEYRPSDA 82
Y DL + D + SG ++++ + ++L+ +L +H V+ +S Q + +
Sbjct: 32 YLDLNVDFD--KKSLSGFAELSLDWFTDNKAPLILDTRDLVIHRVMAKNSQGQWVKVNYD 89
Query: 83 IMDKDDEILV-LVFDEPLAVGEGILRIIFYGKLNEHTKGFYKCSYVEKEVK-KNMAVTQF 140
+ +DD + L + PL ++ Y E G S + K K +Q
Sbjct: 90 LAKRDDVLGSKLTINTPLNAK----KVRVYYNSTEKATGLQWLSAEQTAGKEKPFLFSQN 145
Query: 141 EAVDARRCFPCWDEPALKATFKITLDIPSELTALSNMPILDEKLNGNLKTVYFEESPVMS 200
+A+ AR P D P+++ T+ T I ++ L+ M +E +F +
Sbjct: 146 QAIHARSWIPIQDTPSVRVTY--TARITTDKDLLAVMSANNEPGTERDGDYFFSMPQAIP 203
Query: 201 TYLVAFVVGLFDHIEDTTTNGVKVHVYCPVGKSSEGKHALDVAIKSLGIYTEFFSTPYPL 260
YL+A VG + + G+ Y +E + K+ +Y ++ Y L
Sbjct: 204 PYLIAIGVGDLEFKAMSHQTGIYAESYILDAAVAEFDDTQAMIDKAEQMYGKYRWGRYDL 263
Query: 261 PKLDMVAVSEFHAGAMENFGLIVYRENELLYNEKTSTANRKQIMAISTSHEVAHQWFGNL 320
++ F G MEN L + T A K ++ + +HE+AH W GNL
Sbjct: 264 ----LMLPPSFPFGGMEN--------PRLSFITPTVVAGDKSLVNL-IAHELAHSWSGNL 310
Query: 321 VTMEWWTHLWLNEGFATWI------SYMATDIMFPEWKMWTQFLRQTSHGLRLDAQEQSH 374
VT E W LWLNEGF +++ + TD E + Q L + L LDA +
Sbjct: 311 VTNESWRDLWLNEGFTSYVENRIMEAVFGTDRAVMEQALGAQDL--NAEILELDASDTQL 368
Query: 375 PIEVEVHRADEIDQVFDAISYNKGSAVIRMLQSYLGEDIFQKSLSLYMKKYAWKNVETED 434
I++ + + D F + Y KG + L+ G + F + Y +A++++ T++
Sbjct: 369 YIDL---KGRDPDDAFSGVPYVKGQLFLMYLEEKFGRERFDAFVLEYFDSHAFQSLGTDN 425
Query: 435 L 435
Sbjct: 426 F 426
>pdb|2XQ0|A Chain A, Structure Of Yeast Lta4 Hydrolase In Complex With Bestatin
Length = 632
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 91/361 (25%), Positives = 151/361 (41%), Gaps = 44/361 (12%)
Query: 123 KCSYVE----KEVK--KNMAVTQFEAVDARRCFPCWDEPALKATFKITLDIPSELTALSN 176
KC+ ++ K+ K K +Q EA+ AR FPC+D P++K+TF +++ P + S
Sbjct: 123 KCTALQWLNSKQTKGGKPYVFSQLEAIHARSLFPCFDTPSVKSTFTASIESPLPV-VFSG 181
Query: 177 MPILDEKLNGNLKTVYFEESPVMSTYLVAFVVGLFDHIEDTTTNGVKVHVYCPVGKSSEG 236
+ I D + N+ FE+ + YL+ G + G + VY + +
Sbjct: 182 IRIEDTSKDTNI--YRFEQKVPIPAYLIGIASGDLS----SAPIGPRSTVYTEPFRLKDC 235
Query: 237 KHALDVAIKSLGIYTEFFSTPYPLPKLD-MVAVSEFHAGAMENFGLIVYRENELLYNEKT 295
+ + ++ E Y D +V V + G ME+ + L ++
Sbjct: 236 QWEFENDVEKFIQTAEKIIFEYEWGTYDILVNVDSYPYGGMESPNMTFATPTLLAHD--- 292
Query: 296 STANRKQIMAISTSHEVAHQWFGNLVTMEWWTHLWLNEGFATWISYMATDIM-------- 347
R I I+ HE+AH W GNLVT W H WLNEG W Y+ I+
Sbjct: 293 ----RSNIDVIA--HELAHSWSGNLVTNCSWNHFWLNEG---WTVYLERRIIGAIHGEPT 343
Query: 348 --FPEWKMWTQFLRQTSHGLRLDAQEQSHPIEVEVHRADEIDQVFDAISYNKGSAVIRML 405
F W+ Q S D + S ++ ++ + D F + Y KG ++ L
Sbjct: 344 RHFSALIGWSDL--QNSIDSMKDPERFSTLVQ-NLNDNTDPDDAFSTVPYEKGFNLLFHL 400
Query: 406 QSYLGEDI-FQKSLSLYMKKYAWKNVET----EDLWSVLSEESGINITSLMECWTKQKGH 460
++ LG F + Y KK+A K+++T + L+ E+ I + E W + G
Sbjct: 401 ETILGGKAEFDPFIRHYFKKFAKKSLDTFQFLDTLYEFYPEKKEILDSVDWETWLYKPGM 460
Query: 461 P 461
P
Sbjct: 461 P 461
>pdb|2XPY|A Chain A, Structure Of Native Leukotriene A4 Hydrolase From
Saccharomyces Cerevisiae
pdb|2XPZ|A Chain A, Structure Of Native Yeast Lta4 Hydrolase
Length = 632
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 91/361 (25%), Positives = 149/361 (41%), Gaps = 44/361 (12%)
Query: 123 KCSYVE----KEVK--KNMAVTQFEAVDARRCFPCWDEPALKATFKITLDIPSELTALSN 176
KC+ ++ K+ K K +Q EA+ AR FPC+D P++K+TF +++ P + S
Sbjct: 123 KCTALQWLNSKQTKGGKPYVFSQLEAIHARSLFPCFDTPSVKSTFTASIESPLPV-VFSG 181
Query: 177 MPILDEKLNGNLKTVYFEESPVMSTYLVAFVVGLFDHIEDTTTNGVKVHVYCPVGKSSEG 236
+ I D + N+ FE+ + YL+ G + G + VY + +
Sbjct: 182 IRIEDTSKDTNI--YRFEQKVPIPAYLIGIASGDLS----SAPIGPRSTVYTEPFRLKDC 235
Query: 237 KHALDVAIKSLGIYTEFFSTPYPLPKLD-MVAVSEFHAGAMENFGLIVYRENELLYNEKT 295
+ + ++ E Y D +V V + G ME+ N
Sbjct: 236 QWEFENDVEKFIQTAEKIIFEYEWGTYDILVNVDSYPYGGMES-------PNMTFATPTL 288
Query: 296 STANRKQIMAISTSHEVAHQWFGNLVTMEWWTHLWLNEGFATWISYMATDIM-------- 347
+R I I+ HE+AH W GNLVT W H WLNEG W Y+ I+
Sbjct: 289 IAHDRSNIDVIA--HELAHSWSGNLVTNCSWNHFWLNEG---WTVYLERRIIGAIHGEPT 343
Query: 348 --FPEWKMWTQFLRQTSHGLRLDAQEQSHPIEVEVHRADEIDQVFDAISYNKGSAVIRML 405
F W+ Q S D + S ++ ++ + D F + Y KG ++ L
Sbjct: 344 RHFSALIGWSDL--QNSIDSMKDPERFSTLVQ-NLNDNTDPDDAFSTVPYEKGFNLLFHL 400
Query: 406 QSYLGEDI-FQKSLSLYMKKYAWKNVET----EDLWSVLSEESGINITSLMECWTKQKGH 460
++ LG F + Y KK+A K+++T + L+ E+ I + E W + G
Sbjct: 401 ETILGGKAEFDPFIRHYFKKFAKKSLDTFQFLDTLYEFYPEKKEILDSVDWETWLYKPGM 460
Query: 461 P 461
P
Sbjct: 461 P 461
>pdb|3RJO|A Chain A, Crystal Structure Of Erap1 Peptide Binding Domain
Length = 419
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 63/141 (44%), Gaps = 25/141 (17%)
Query: 459 GHPVVYVNCKDNLLEFKQSQFV--SSGLQGDGR-WTIPITLSLGSYNNQRNFLLESQSQS 515
G P++ + + + KQ ++ S G G W +P+T + FLL++++
Sbjct: 1 GFPLITITVRGRNVHMKQEHYMKGSDGAPDTGYLWHVPLTFITSKSDMVHRFLLKTKTDV 60
Query: 516 VDISEMLPSSDGKLCSFKECDETLWIKVNVEQSGFYRVIYDDE----LSARLRKAVENNC 571
+ +LP +E WIK NV +G+Y V Y+D+ L+ L+ +
Sbjct: 61 L----ILP------------EEVEWIKFNVGMNGYYIVHYEDDGWDSLTGLLKGT--HTA 102
Query: 572 LSAADKLGILDDMLALCQACK 592
+S+ D+ ++++ L K
Sbjct: 103 VSSNDRASLINNAFQLVSIGK 123
>pdb|2Q9F|A Chain A, Crystal Structure Of Human Cytochrome P450 46a1 In Complex
With Cholesterol-3-Sulphate
pdb|2Q9G|A Chain A, Crystal Structure Of Human Cytochrome P450 46a1
pdb|3MDM|A Chain A, Thioperamide Complex Of Cytochrome P450 46a1
pdb|3MDR|A Chain A, Tranylcypromine Complex Of Cytochrome P450 46a1
pdb|3MDR|B Chain B, Tranylcypromine Complex Of Cytochrome P450 46a1
pdb|3MDT|A Chain A, Voriconazole Complex Of Cytochrome P450 46a1
pdb|3MDT|B Chain B, Voriconazole Complex Of Cytochrome P450 46a1
pdb|3MDV|A Chain A, Clotrimazole Complex Of Cytochrome P450 46a1
pdb|3MDV|B Chain B, Clotrimazole Complex Of Cytochrome P450 46a1
pdb|4ENH|A Chain A, Crystal Structure Of Human Cytochrome P450 Cyp46a1 With
Fluvoxamine Bound
pdb|4FIA|A Chain A, Crystal Structure Of Human Cyp46a1 P450 With Bicalutamide
Bound
Length = 456
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 374 HPIEVEVHRADEIDQVFDAISYNKGSAVIRMLQSYLGEDIFQKSL 418
H V V + + + + YNK S + R LQ+ GE +F + L
Sbjct: 33 HKTSVIVTSPESVKKFLMSTKYNKDSKMYRALQTVFGERLFGQGL 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,973,669
Number of Sequences: 62578
Number of extensions: 794232
Number of successful extensions: 1962
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1827
Number of HSP's gapped (non-prelim): 40
length of query: 653
length of database: 14,973,337
effective HSP length: 105
effective length of query: 548
effective length of database: 8,402,647
effective search space: 4604650556
effective search space used: 4604650556
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)