Query 006262
Match_columns 653
No_of_seqs 308 out of 2106
Neff 8.8
Searched_HMMs 46136
Date Thu Mar 28 20:43:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006262.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006262hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1046 Puromycin-sensitive am 100.0 3E-125 7E-130 1087.0 61.3 624 8-650 23-655 (882)
2 TIGR02412 pepN_strep_liv amino 100.0 4E-108 9E-113 947.0 66.9 597 19-651 13-624 (831)
3 COG0308 PepN Aminopeptidase N 100.0 1.4E-85 2.9E-90 758.6 57.7 574 16-614 13-606 (859)
4 TIGR02414 pepN_proteo aminopep 100.0 4.2E-83 9.1E-88 728.1 61.1 507 17-557 4-539 (863)
5 PRK14015 pepN aminopeptidase N 100.0 1.6E-82 3.4E-87 725.7 63.6 517 6-557 6-551 (875)
6 TIGR02411 leuko_A4_hydro leuko 100.0 4.7E-78 1E-82 670.1 41.1 426 16-468 7-453 (601)
7 PF01433 Peptidase_M1: Peptida 100.0 9E-77 1.9E-81 640.2 37.1 384 15-398 1-390 (390)
8 KOG1047 Bifunctional leukotrie 100.0 7.5E-56 1.6E-60 455.2 29.2 442 1-465 1-459 (613)
9 KOG1932 TATA binding protein a 100.0 3.2E-37 6.9E-42 339.1 32.7 424 22-467 27-505 (1180)
10 PF11838 ERAP1_C: ERAP1-like C 99.8 1.3E-18 2.8E-23 182.8 9.8 112 540-651 1-113 (324)
11 COG3975 Predicted protease wit 99.2 3.6E-10 7.8E-15 118.3 18.8 250 221-478 169-447 (558)
12 PF13485 Peptidase_MA_2: Pepti 99.2 1.7E-11 3.6E-16 109.9 6.8 106 302-421 23-128 (128)
13 PF10460 Peptidase_M30: Peptid 97.8 0.00064 1.4E-08 70.6 15.9 142 301-458 136-285 (366)
14 PF05299 Peptidase_M61: M61 gl 97.1 0.00033 7.1E-09 61.2 2.5 43 304-346 4-57 (122)
15 PF04450 BSP: Peptidase of pla 96.7 0.034 7.4E-07 53.6 13.4 171 239-453 26-204 (205)
16 PF07607 DUF1570: Protein of u 95.9 0.0047 1E-07 54.6 2.3 40 305-344 2-43 (128)
17 PF10026 DUF2268: Predicted Zn 93.4 0.32 6.9E-06 46.8 8.0 100 242-348 4-113 (195)
18 COG4324 Predicted aminopeptida 89.0 0.39 8.4E-06 46.9 3.4 40 302-347 195-234 (376)
19 PF01863 DUF45: Protein of unk 86.6 4.6 9.9E-05 39.0 9.5 94 237-357 108-201 (205)
20 PF10023 DUF2265: Predicted am 86.1 0.71 1.5E-05 47.6 3.5 40 302-347 163-202 (337)
21 PRK04860 hypothetical protein; 85.6 1.4 3E-05 40.8 4.9 70 239-317 5-76 (160)
22 smart00731 SprT SprT homologue 83.4 1.2 2.5E-05 40.7 3.4 67 246-318 6-73 (146)
23 PF12725 DUF3810: Protein of u 80.0 2.2 4.7E-05 44.4 4.4 31 304-346 196-226 (318)
24 PF10989 DUF2808: Protein of u 73.5 43 0.00093 30.4 10.5 48 76-124 76-123 (146)
25 PF03272 Enhancin: Viral enhan 71.8 1.1E+02 0.0024 36.0 15.8 129 306-454 238-377 (775)
26 PF01447 Peptidase_M4: Thermol 69.6 8.3 0.00018 35.3 4.9 27 234-261 67-93 (150)
27 PF12315 DUF3633: Protein of u 68.7 8.2 0.00018 36.9 4.7 41 304-346 93-133 (212)
28 COG2719 SpoVR Uncharacterized 65.1 48 0.001 35.4 9.7 51 306-362 251-301 (495)
29 COG4783 Putative Zn-dependent 64.7 5.1 0.00011 43.1 2.8 58 259-321 90-147 (484)
30 PF04234 CopC: CopC domain; I 64.5 19 0.00042 30.1 5.8 61 52-112 19-82 (97)
31 PF06114 DUF955: Domain of unk 63.9 8.2 0.00018 33.1 3.6 32 286-321 28-59 (122)
32 PRK04351 hypothetical protein; 63.3 7.7 0.00017 35.4 3.3 60 248-315 12-72 (149)
33 PF11940 DUF3458: Domain of un 61.9 74 0.0016 33.8 10.8 72 471-556 6-84 (367)
34 COG1451 Predicted metal-depend 61.1 54 0.0012 32.2 9.0 93 237-356 119-211 (223)
35 COG2372 CopC Uncharacterized p 59.0 33 0.00071 30.2 6.2 60 53-112 47-110 (127)
36 PF10263 SprT-like: SprT-like 56.0 8.8 0.00019 35.3 2.5 19 300-318 56-74 (157)
37 COG3227 LasB Zinc metalloprote 54.1 14 0.00031 39.7 3.8 111 230-347 265-381 (507)
38 COG0501 HtpX Zn-dependent prot 51.4 24 0.00051 36.3 5.1 64 251-322 109-175 (302)
39 PRK10301 hypothetical protein; 49.7 1.1E+02 0.0025 26.8 8.4 26 87-112 84-109 (124)
40 PF01435 Peptidase_M48: Peptid 49.6 19 0.00042 35.0 3.9 69 246-323 36-108 (226)
41 cd04269 ZnMc_adamalysin_II_lik 49.2 74 0.0016 30.3 7.8 14 303-316 130-143 (194)
42 PF13699 DUF4157: Domain of un 47.2 28 0.00061 28.0 3.8 64 245-316 5-73 (79)
43 PF08325 WLM: WLM domain; Int 46.3 14 0.00029 35.2 2.1 25 296-320 74-98 (186)
44 PRK03982 heat shock protein Ht 46.0 38 0.00083 34.7 5.5 66 243-319 70-140 (288)
45 PRK01345 heat shock protein Ht 45.9 34 0.00073 35.6 5.2 69 243-320 69-140 (317)
46 PRK04897 heat shock protein Ht 45.5 26 0.00057 36.1 4.2 68 243-319 82-152 (298)
47 PRK05457 heat shock protein Ht 43.7 33 0.00072 35.1 4.6 68 244-320 80-150 (284)
48 PF01431 Peptidase_M13: Peptid 42.7 24 0.00053 34.0 3.3 33 290-322 22-54 (206)
49 PRK03001 M48 family peptidase; 42.2 37 0.0008 34.7 4.7 19 301-319 121-139 (283)
50 PF13574 Reprolysin_2: Metallo 42.1 17 0.00036 34.2 2.0 13 304-316 111-123 (173)
51 PRK03072 heat shock protein Ht 40.6 41 0.00089 34.5 4.7 68 243-319 72-142 (288)
52 PHA02456 zinc metallopeptidase 40.3 17 0.00038 30.7 1.6 15 303-317 78-92 (141)
53 PF12174 RST: RCD1-SRO-TAF4 (R 39.9 58 0.0012 25.5 4.3 47 399-446 12-58 (70)
54 PRK02870 heat shock protein Ht 38.3 62 0.0013 34.0 5.7 63 245-315 119-184 (336)
55 PRK02391 heat shock protein Ht 37.3 58 0.0013 33.5 5.3 69 243-320 78-149 (296)
56 PF08014 DUF1704: Domain of un 36.1 1.1E+02 0.0024 32.3 7.1 85 244-343 116-213 (349)
57 KOG2661 Peptidase family M48 [ 35.3 98 0.0021 31.9 6.2 20 301-320 272-291 (424)
58 PRK01265 heat shock protein Ht 35.3 64 0.0014 33.6 5.2 66 244-318 86-154 (324)
59 COG2856 Predicted Zn peptidase 34.6 1.4E+02 0.003 29.1 7.1 40 304-343 72-116 (213)
60 cd04279 ZnMc_MMP_like_1 Zinc-d 34.2 1.7E+02 0.0037 26.6 7.5 36 222-257 2-40 (156)
61 cd04272 ZnMc_salivary_gland_MP 32.6 1.1E+02 0.0025 29.7 6.3 13 304-316 145-157 (220)
62 PF14524 Wzt_C: Wzt C-terminal 31.6 78 0.0017 27.9 4.7 25 86-110 83-107 (142)
63 PF01421 Reprolysin: Reprolysi 30.4 72 0.0016 30.5 4.4 14 302-315 129-142 (199)
64 PF09836 DUF2063: Uncharacteri 29.4 31 0.00066 28.6 1.4 31 405-435 55-85 (94)
65 PF04597 Ribophorin_I: Ribopho 28.9 6E+02 0.013 27.8 11.6 83 30-112 10-103 (432)
66 COG3091 SprT Zn-dependent meta 28.8 62 0.0014 29.3 3.3 13 303-315 60-72 (156)
67 smart00675 DM11 Domains in hyp 27.5 4.7E+02 0.01 24.3 8.9 37 27-64 35-71 (164)
68 PF15641 Tox-MPTase5: Metallop 26.8 1.1E+02 0.0024 24.7 4.0 20 301-320 61-81 (109)
69 PF13402 M60-like: Peptidase M 25.7 1.1E+02 0.0023 31.6 5.0 108 234-349 143-259 (307)
70 PF09768 Peptidase_M76: Peptid 24.3 1.8E+02 0.0038 27.4 5.6 25 301-325 68-92 (173)
71 KOG2719 Metalloprotease [Gener 24.0 1.1E+02 0.0023 33.1 4.5 65 248-317 224-293 (428)
72 PF13688 Reprolysin_5: Metallo 23.8 53 0.0011 31.3 2.1 15 302-316 140-154 (196)
73 KOG3607 Meltrins, fertilins an 22.1 2.2E+02 0.0048 33.2 6.9 88 223-315 242-334 (716)
74 PF13205 Big_5: Bacterial Ig-l 21.3 4.7E+02 0.01 21.5 7.6 26 86-111 59-85 (107)
75 PF02671 PAH: Paired amphipath 20.8 2.2E+02 0.0047 20.0 4.3 42 595-643 4-46 (47)
76 PF04293 SpoVR: SpoVR like pro 20.5 2.3E+02 0.0049 30.7 6.2 40 302-347 241-280 (426)
77 COG3590 PepO Predicted metallo 20.1 22 0.00047 39.2 -1.5 60 281-340 461-526 (654)
78 PF06483 ChiC: Chitinase C; I 20.1 5.1E+02 0.011 24.4 7.5 91 21-116 52-146 (180)
No 1
>KOG1046 consensus Puromycin-sensitive aminopeptidase and related aminopeptidases [Amino acid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-125 Score=1086.99 Aligned_cols=624 Identities=45% Similarity=0.771 Sum_probs=572.1
Q ss_pred ccccCCCCCCCCceeeEEEEEEEEccCCceEEEEEEEEEEEecccCEEEEEecCceeEEEEEEecCCcccccccee-ecC
Q 006262 8 NQFKSQARLPKFAIPSYYDLYIKLDLVACTFSGNVNININIIEKTNFIVLNALELNVHEVLFTSSHNQEYRPSDAI-MDK 86 (653)
Q Consensus 8 ~~~~~~~rLp~~~~p~~Y~l~l~~d~~~~~f~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~~~~~~~~~~~~~~~~-~~~ 86 (653)
.++...+|||.+++|+||+|.|.+++....|.|++.|.+.+.++++.|+||+.+++|.++.+.............. .+.
T Consensus 23 ~~~~~~~rLP~~v~P~~Y~l~l~~~l~~~~f~G~v~I~l~v~~~t~~i~Lh~~~l~i~~~~~~~~~~~~~~~~~~~~~~~ 102 (882)
T KOG1046|consen 23 DKFPNEYRLPTNVVPLHYDLTLKPDLEEFTFTGSVKISLEVSEATRFIVLHAKDLKITSASLVSRPSSGSVQLEVSVEEK 102 (882)
T ss_pred ccccccccCCCCCCCceeEEEEecCCcCCcceeEEEEEEEEecccCEEEEEhhhccceeEEEEecCCCCccccccccccc
Confidence 3333678999999999999999999999999999999999999999999999999999999875211111111111 111
Q ss_pred C-CcEEEEEeccCccce-eEEEEEEEEeeecCCCcceEEeeeec-CCeeeeeeecccccCCCCeeeeecCCCCCeeEEEE
Q 006262 87 D-DEILVLVFDEPLAVG-EGILRIIFYGKLNEHTKGFYKCSYVE-KEVKKNMAVTQFEAVDARRCFPCWDEPALKATFKI 163 (653)
Q Consensus 87 ~-~~~l~i~l~~~l~~g-~~~l~i~y~g~~~~~~~G~y~~~y~~-~g~~~~~~~T~~ep~~Ar~~fPc~DeP~~ka~f~l 163 (653)
. .+.+.+.+++++.+| .|+|+|.|.|.+++++.|||+++|.+ .+..+++++|||||++||++|||||||++||+|+|
T Consensus 103 ~~~~~l~~~~~~~l~~~~~y~L~i~f~g~l~~~~~G~y~s~y~~~~~~~~~~~~Tqfept~AR~~FPCfDeP~~KAtF~I 182 (882)
T KOG1046|consen 103 EQEETLVFPLNETLLAGSSYTLTIEFTGKLNDSSEGFYRSSYTDSEGSEKSIAATQFEPTDARRAFPCFDEPAFKATFTI 182 (882)
T ss_pred ccceEEEEEcccccccCCeEEEEEEEeEeecCCcceeeeecccCCCCceEEEEEeccCccchhhcCCCCCcccccCceEE
Confidence 1 167889998999999 79999999999999999999999987 46668999999999999999999999999999999
Q ss_pred EEEeCCCCeEEecCcccce-eecCCEEEEEEEeCCcccceEEEEEEecceeeeecccCCeEEEEEecCCCcchhHHHHHH
Q 006262 164 TLDIPSELTALSNMPILDE-KLNGNLKTVYFEESPVMSTYLVAFVVGLFDHIEDTTTNGVKVHVYCPVGKSSEGKHALDV 242 (653)
Q Consensus 164 ~i~~p~~~~~~sn~~~~~~-~~~~~~~~~~f~~t~~mstyl~a~~vg~f~~~~~~~~~g~~v~v~~~~~~~~~~~~~l~~ 242 (653)
+|.||++++++|||++.++ ..++++++++|++||+||||++||+||+|...+..+.+|+++++|++|+...++++|+++
T Consensus 183 tl~hp~~~~aLSNm~v~~~~~~~~~~~~~~F~~Tp~MstYLvAf~V~~f~~~e~~~~~~v~vrv~a~p~~~~~~~~al~~ 262 (882)
T KOG1046|consen 183 TLVHPKGYTALSNMPVIKEEPVDDGWKTTTFEKTPKMSTYLVAFAVGDFVYVETITKSGVPVRVYARPEKINQGQFALEV 262 (882)
T ss_pred EEEecCCceEeecCcccccccccCCeeEEEEEecCCCchhhheeeeeccccceeecCCCceEEEEeChHHhhHHHHHHHH
Confidence 9999999999999999876 455559999999999999999999999999999888889999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCCcceeecCCCCcccccccccceeecceeeecCCCCCHHHHHHHHHHHHHHHHHHHhcCccC
Q 006262 243 AIKSLGIYTEFFSTPYPLPKLDMVAVSEFHAGAMENFGLIVYRENELLYNEKTSTANRKQIMAISTSHEVAHQWFGNLVT 322 (653)
Q Consensus 243 ~~~~l~~~e~~fg~~yp~~kld~V~~P~~~~game~~Gli~~~e~~ll~~~~~s~~~~~~~~~~~iaHElaHqWfGnlVt 322 (653)
+.++|+||+++||++||++|+|+|++|+|..|||||||||+|+|..+|+++..++..++++++.+||||+|||||||+||
T Consensus 263 ~~~~L~~~e~~f~i~yPLpK~D~iavPdf~~GAMENwGLvtyre~~lL~~~~~ss~~~k~~va~vIaHElAHQWFGNLVT 342 (882)
T KOG1046|consen 263 ATKVLEFYEDYFGIPYPLPKLDLVAVPDFSAGAMENWGLVTYRETALLYDPQTSSSSNKQRVAEVIAHELAHQWFGNLVT 342 (882)
T ss_pred HHHHHHHHHHHhCCCCCCccccEEecCCccccchhcCcceeeeehhhccCCCcCcHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhHhhhhHHHHHHHHHHhhhCCchhhHHHHHHHhh-hhhccccccCCCCceeecCChhhhhhhcccccchhhhHH
Q 006262 323 MEWWTHLWLNEGFATWISYMATDIMFPEWKMWTQFLRQTS-HGLRLDAQEQSHPIEVEVHRADEIDQVFDAISYNKGSAV 401 (653)
Q Consensus 323 ~~~w~d~WL~EGfA~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~p~~~~~~~~~~~~~~f~~i~Y~Kg~~v 401 (653)
|+||+|+|||||||+|+++++++..+|+|..+++++.+.. .++..|+..++||+..++.++.+|...||.++|.||++|
T Consensus 343 m~wW~dLWLnEGfAt~~~~~~v~~~~p~~~~~~~~~~~~l~~~l~~D~l~~shpi~~~v~~~~ei~e~fd~i~Y~KGasv 422 (882)
T KOG1046|consen 343 MKWWNDLWLNEGFATYVEYLAVDHLFPEWDIWEQFLLENLERVLSLDALASSHPISVPVESPSEIDEIFDEISYQKGASV 422 (882)
T ss_pred HhhhhhhhhcccHHHHHHHHhhccCCcchhhHHHHHHHHHHHHhhhhcccccCCeeeecCCcchhhhhhhhhhhhHHHHH
Confidence 9999999999999999999999999999999999887777 579999999999999999999999999999999999999
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHhcccCCCChHHHHHHHHhhcCCCHHHHHHHHhcCCCcceEEEEEeCCEEEEEEEeeec
Q 006262 402 IRMLQSYLGEDIFQKSLSLYMKKYAWKNVETEDLWSVLSEESGINITSLMECWTKQKGHPVVYVNCKDNLLEFKQSQFVS 481 (653)
Q Consensus 402 l~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~sg~~l~~~~~~W~~~~G~P~l~v~~~~~~i~l~Q~rf~~ 481 (653)
+|||+.++|++.|++||+.|+++|+|+|++++|||++|+...+.|++++|+.|+.|+|||+|+|.++++.++++|+||..
T Consensus 423 lRML~~~lGe~~F~~gi~~yL~~~~y~na~~~DLw~~l~~~~~~~v~~~M~~Wt~Q~G~Pvv~V~~~~~~~~l~Q~rf~~ 502 (882)
T KOG1046|consen 423 LRMLESLLGEEVFRKGLRSYLKKHQYSNAKTEDLWDALEEGSGLDVSELMDTWTKQMGYPVVTVERNGDSLTLTQERFLS 502 (882)
T ss_pred HHHHHHHHCHHHHHHHHHHHHHHhccCCCCchhHHHHHhccCCCCHHHHHhhhhcCCCCceEEEEecCCEEEEehhhhcc
Confidence 99999999999999999999999999999999999999988999999999999999999999999999999999999987
Q ss_pred CCC--CCCCeeEEEEEEEECCcccceeeEeecceeEEEecCCCCCCCCccccccccCCCceEEeccCceeEEEEEcCHHH
Q 006262 482 SGL--QGDGRWTIPITLSLGSYNNQRNFLLESQSQSVDISEMLPSSDGKLCSFKECDETLWIKVNVEQSGFYRVIYDDEL 559 (653)
Q Consensus 482 ~~~--~~~~~w~iPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~gyyrV~Yd~~~ 559 (653)
.+. .....|+||++|.+.........|++.++..+.++. . .+||++|.++.|||||+||+++
T Consensus 503 ~~~~~~~~~~w~iPl~~~~~~~~~~~~~~~~~~~~~~~l~~---------------~-~~wi~~N~~~~g~yRV~Yd~~~ 566 (882)
T KOG1046|consen 503 DPDPSEDNYLWWIPLTYTTSGSGSVPKFWLSSKSTTIKLPE---------------S-DQWIKVNLEQTGYYRVNYDDEN 566 (882)
T ss_pred CCCccccCcccceeEEEEcCCCCccceeeecCCCcceecCC---------------C-CeEEEEeCCcceEEEEEeCHHH
Confidence 654 234599999999987665445577887777777764 1 3799999999999999999999
Q ss_pred HHHHHHHHHc-CCCChhcHHHHHHHHHHHHHcCCCCHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHhccChhhHHH
Q 006262 560 SARLRKAVEN-NCLSAADKLGILDDMLALCQACKQPLSYLLLLLDAHRKEHDSMVLSKLINVCYDVVEIITDAMPDAVNE 638 (653)
Q Consensus 560 w~~l~~~l~~-~~i~~~~ra~li~D~~~l~~~g~l~~~~~l~l~~~l~~E~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~ 638 (653)
|..|+++|.. ..+++.+|++||+|+|+|+++|+++++.+|+++.||.+|++|.||..+...+..+.. +.. .+.+..
T Consensus 567 w~~l~~~l~~~~~~~~~~Ra~li~D~~~la~~~~~~~~~~l~l~~~l~~e~~~~p~~~~~~~l~~~~~-~~~--~~~~~~ 643 (882)
T KOG1046|consen 567 WALLIEQLKNHESLSVIDRAQLINDAFALARAGRLPYSIALNLISYLKNETDYVPWSAAIRSLYKLHS-LED--TEIYSK 643 (882)
T ss_pred HHHHHHHHhhcCccCHhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhcccccchHHHHHHHHHHHhh-ccc--chHHHH
Confidence 9999999987 689999999999999999999999999999999999999999999999999999988 554 458999
Q ss_pred HHHHHHHhcccc
Q 006262 639 LKDFSSVSSNLL 650 (653)
Q Consensus 639 ~~~~~~~~~~~~ 650 (653)
++.|+..+..++
T Consensus 644 ~~~~~~~l~~~~ 655 (882)
T KOG1046|consen 644 FKEFVKKLILPI 655 (882)
T ss_pred HHHHHHHHHHHH
Confidence 999999887765
No 2
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=100.00 E-value=4e-108 Score=946.98 Aligned_cols=597 Identities=23% Similarity=0.360 Sum_probs=505.5
Q ss_pred CceeeEEEEEEEEccCCc--eEEEEEEEEEEEecccCEEEEEecCceeEEEEEEecCCccccccceeecCCCcEEEEEec
Q 006262 19 FAIPSYYDLYIKLDLVAC--TFSGNVNININIIEKTNFIVLNALELNVHEVLFTSSHNQEYRPSDAIMDKDDEILVLVFD 96 (653)
Q Consensus 19 ~~~p~~Y~l~l~~d~~~~--~f~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~l~i~l~ 96 (653)
.+.+.||+|+|+++.+.. .+.|+++|+|++.++++.|.||+.+++|.+|.+++ . .......++ ..|.++
T Consensus 13 ~~~~~~Y~l~l~l~~~~~~~~~~~~~~i~~~~~~~~~~l~LD~~~l~I~~v~vng------~-~~~~~~~~~--~~i~l~ 83 (831)
T TIGR02412 13 LITVEHYEIALDLTGADEFFATRCVSTNTVRLSEPGADTFLDLLAAQIESVTLNG------I-LDVAPVYDG--SRIPLP 83 (831)
T ss_pred hccceeEEEEEEccCCccccccceEEEEEEEEcCCCCcEEEEccCCEEEEEEECC------c-ccCccccCC--CEEEcc
Confidence 356999999999976544 55899999999988899999999999999999862 1 122222233 346676
Q ss_pred cCccceeEEEEEEEEeeecCCCcceEEeeeecCCeeeeeeecccccCCCCeeeeecCCCCCeeEEEEEEEeCCCCeEEec
Q 006262 97 EPLAVGEGILRIIFYGKLNEHTKGFYKCSYVEKEVKKNMAVTQFEAVDARRCFPCWDEPALKATFKITLDIPSELTALSN 176 (653)
Q Consensus 97 ~~l~~g~~~l~i~y~g~~~~~~~G~y~~~y~~~g~~~~~~~T~~ep~~Ar~~fPc~DeP~~ka~f~l~i~~p~~~~~~sn 176 (653)
. |.+|.++|+|.|.+.+++.+.|+|+..+..+|+ ++++|||||.+||+||||||||++||+|+++|++|++|+|+||
T Consensus 84 ~-l~~g~~~l~i~~~~~~~~~~~Gl~~~~~~~~g~--~~~~Tq~ep~~Ar~~fPcfDeP~~KAtf~ltit~p~~~~v~sN 160 (831)
T TIGR02412 84 G-LLTGENTLRVEATRAYTNTGEGLHRFVDPVDGE--VYLYTQFEPADARRVFAVFDQPDLKANFKFSVKAPEDWTVISN 160 (831)
T ss_pred C-CCCCceEEEEEEEEEecCCCceEEEEEeCCCCe--EEEEECCCCcCceeeEecCCCCCCceeEEEEEEECCCceEECC
Confidence 5 777889999999999999999999965544443 7789999999999999999999999999999999999999999
Q ss_pred CcccceeecCCEEEEEEEeCCcccceEEEEEEecceeeeecccCCeEEEEEecCCCcch--hHHHHHHHHHHHHHHHHHh
Q 006262 177 MPILDEKLNGNLKTVYFEESPVMSTYLVAFVVGLFDHIEDTTTNGVKVHVYCPVGKSSE--GKHALDVAIKSLGIYTEFF 254 (653)
Q Consensus 177 ~~~~~~~~~~~~~~~~f~~t~~mstyl~a~~vg~f~~~~~~~~~g~~v~v~~~~~~~~~--~~~~l~~~~~~l~~~e~~f 254 (653)
|++.+....++.++++|..|+|||+|++||++|+|..++. ..+|+++++|++|+..+. ++++++.+.++|++|+++|
T Consensus 161 g~~~~~~~~~~~~~~~F~~t~pmstYL~a~~vG~f~~~~~-~~~gvpi~v~~~~~~~~~~~~~~al~~~~~~l~~~e~~f 239 (831)
T TIGR02412 161 SRETDVTPEPADRRWEFPETPKLSTYLTAVAAGPYHSVQD-ESRSYPLGIYARRSLAQYLDADAIFTITRQGLAFFHRKF 239 (831)
T ss_pred CccccccccCCCeEEEecCCCCcccceEEEEEeceEEEee-cCCCEEEEEEECcchhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 9987765556678899999999999999999999998874 357899999999987654 6789999999999999999
Q ss_pred CCCCCCCCcceeecCCCCcccccccccceeecceeeecCCCCCHHHHHHHHHHHHHHHHHHHhcCccCccccchhHhhhh
Q 006262 255 STPYPLPKLDMVAVSEFHAGAMENFGLIVYRENELLYNEKTSTANRKQIMAISTSHEVAHQWFGNLVTMEWWTHLWLNEG 334 (653)
Q Consensus 255 g~~yp~~kld~V~~P~~~~game~~Gli~~~e~~ll~~~~~s~~~~~~~~~~~iaHElaHqWfGnlVt~~~w~d~WL~EG 334 (653)
|+|||++|+|+|++|+|..|||||||+|+|+|. +++.+. .+...++.++.+||||+|||||||+|||+||+|+|||||
T Consensus 240 g~pYP~~k~d~V~vP~f~~GaMEn~Glit~~e~-~l~~~~-~~~~~~~~~~~viaHElAHqWFGnlVT~~wW~dlWLnEG 317 (831)
T TIGR02412 240 GYPYPFKKYDQIFVPEFNAGAMENAGCVTFAEN-FLHRAE-ATRAEKENRAGVILHEMAHMWFGDLVTMRWWNDLWLNES 317 (831)
T ss_pred CCCCCcccCCEEEcCCCCCCcccccceeeechh-hccCCc-CCHHHHHHHHHHHHHHHHHHHhCCEeccccccchhHHHH
Confidence 999999999999999999999999999999999 555544 345567788899999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhCCchhhHHHHHHHhh-hhhccccccCCCCceeecCChhhhhhhcccccchhhhHHHHHHHHhhCHHH
Q 006262 335 FATWISYMATDIMFPEWKMWTQFLRQTS-HGLRLDAQEQSHPIEVEVHRADEIDQVFDAISYNKGSAVIRMLQSYLGEDI 413 (653)
Q Consensus 335 fA~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~p~~~~~~~~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~~~ 413 (653)
||+|++++++++.+|++..|..|..... .++..|+..++||+..++.++.++...|+.++|.||+++||||+..||++.
T Consensus 318 FAty~e~~~~~~~~~~~~~~~~f~~~~~~~a~~~D~~~~t~Pi~~~~~~~~~~~~~fd~isY~KGa~vL~mL~~~lGee~ 397 (831)
T TIGR02412 318 FAEYMGTLASAEATEYTDAWTTFAAQGKQWAYEADQLPTTHPIVADVADLADALSNFDGITYAKGASVLKQLVAWVGEEA 397 (831)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhcccCCCCCccCCCCHHHHHHhccCccchhHHHHHHHHHHHHCHHH
Confidence 9999999999999999999888876554 668889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccCCCChHHHHHHHHhhcCCCHHHHHHHHhcCCCcceEEEEEe--CCEEE-EEEEeeecCCCCCCCee
Q 006262 414 FQKSLSLYMKKYAWKNVETEDLWSVLSEESGINITSLMECWTKQKGHPVVYVNCK--DNLLE-FKQSQFVSSGLQGDGRW 490 (653)
Q Consensus 414 F~~~l~~yl~~~~~~~~~~~df~~~l~~~sg~~l~~~~~~W~~~~G~P~l~v~~~--~~~i~-l~Q~rf~~~~~~~~~~w 490 (653)
|+++||.|+++|+|+|++++|||+++++++|.++++||++|++++|+|+|+|+++ ++.+. +.|.+ .+ ....|
T Consensus 398 F~~glr~Yl~~~~~~nat~~Dl~~~l~~~sg~dl~~~~~~W~~~~G~P~l~v~~~~~~~~~~~~~~~~---~~--~~~~~ 472 (831)
T TIGR02412 398 FFAGVNAYFKRHAFGNATLDDLIDSLAKASGRDLSAWSDAWLETAGVNTLTPEITTDGGVVSALYPES---SG--PPRPH 472 (831)
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHcCCCCceEEEEEEECCCeEEEEEEec---CC--CCCCe
Confidence 9999999999999999999999999999999999999999999999999999875 34444 22221 11 12469
Q ss_pred EEEEEEEECCcccce-----eeEeecceeEEEecCCCCCCCCccccccccCCCceEEeccCceeEEEEEcCHHHHHHHHH
Q 006262 491 TIPITLSLGSYNNQR-----NFLLESQSQSVDISEMLPSSDGKLCSFKECDETLWIKVNVEQSGFYRVIYDDELSARLRK 565 (653)
Q Consensus 491 ~iPl~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~gyyrV~Yd~~~w~~l~~ 565 (653)
.|||.+....+.... .+++...... ++.. + ..++ .+||++|.++.|||||+||+++|+.|++
T Consensus 473 ~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--------~--~~~~-~~~v~~N~~~~gyyrv~yd~~~~~~l~~ 539 (831)
T TIGR02412 473 RIAIGLYDLDRDDLRRTTLVPLTISGERTA--VPQL--------V--GKRA-PALVLLNDDDLTYAKVRLDPTSFDTVLA 539 (831)
T ss_pred eEEEeeeecCCCcceeeeEEEEEEecCcee--ehhh--------c--CCCC-CCEEEEeCCCcEEEEEECCHHHHHHHHH
Confidence 999998654332111 1233322221 1110 0 0112 5899999999999999999999999999
Q ss_pred HHHcCCCChhcHHHHHHHHHHHHHcCCCCHHHHHHHH-HhhhcCCCHHHHHHHHHHHH-HHHHHHhccChhhHHHHHHHH
Q 006262 566 AVENNCLSAADKLGILDDMLALCQACKQPLSYLLLLL-DAHRKEHDSMVLSKLINVCY-DVVEIITDAMPDAVNELKDFS 643 (653)
Q Consensus 566 ~l~~~~i~~~~ra~li~D~~~l~~~g~l~~~~~l~l~-~~l~~E~~~~~w~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~ 643 (653)
+|.. ..++.+|++|++|+|+++++|.++++.+|+++ .||++|+++.||..++..+. .+...+.. ++.+..|++|+
T Consensus 540 ~l~~-~~~~~~R~~l~~d~~~~~~~g~~~~~~~l~l~~~~l~~E~~~~v~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~ 616 (831)
T TIGR02412 540 ALSK-LPDPLSRAVVWASLWDSVRDGELSPDDYLSTVFAHVPSETDYAVVQQVLSQLLRAVAAQYAP--IADRPALLAVA 616 (831)
T ss_pred Hhhh-CCChhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHH
Confidence 9853 23799999999999999999999999999965 89999999999999999999 88888754 56789999998
Q ss_pred HHhccccc
Q 006262 644 SVSSNLLL 651 (653)
Q Consensus 644 ~~~~~~~~ 651 (653)
..+.-.++
T Consensus 617 ~~~~~~~~ 624 (831)
T TIGR02412 617 ALACRSLR 624 (831)
T ss_pred HHHHHHHH
Confidence 87765543
No 3
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-85 Score=758.55 Aligned_cols=574 Identities=36% Similarity=0.583 Sum_probs=485.9
Q ss_pred CCCCcee-eE--EEEEEEEccC--CceEEEEEEEEEEE--ecccCEEEEEecCceeEEEEEEecCCccccccceeecCCC
Q 006262 16 LPKFAIP-SY--YDLYIKLDLV--ACTFSGNVNININI--IEKTNFIVLNALELNVHEVLFTSSHNQEYRPSDAIMDKDD 88 (653)
Q Consensus 16 Lp~~~~p-~~--Y~l~l~~d~~--~~~f~G~v~I~~~~--~~~~~~i~L~~~~l~i~~v~~~~~~~~~~~~~~~~~~~~~ 88 (653)
++..+.| .+ |++.|+++.. ...|+|+++|++.. ..+...|+||+.+|+|.++++++. .....+..+.
T Consensus 13 ~~~~~~~~~~~i~~~~Ld~~~~~~~~~~~g~~~i~~~~~~~~~~~~lvld~~~l~i~~v~idg~------~~~~~~~~~~ 86 (859)
T COG0308 13 LSLDYRPPEYAIYDIDLDLDLDPEKTTFEGSVTIRLDAGWRSGADPLVLDAVGLEIRSVKIDGK------ALTAWYRLDG 86 (859)
T ss_pred ccccCCCccccccceEEEeeecCCccEEEEEEEEEEeccccCCCCeEEEeccccEEEEEEEcCc------cccccccccC
Confidence 4444555 66 7777766554 48999999999987 344444999999999999999741 1111233334
Q ss_pred cEEEEEeccCc-----cceeEEEEEEEEeeec-CCCcceEEeeeecCCeeeeeeecccccCCCCeeeeecCCCCCeeEEE
Q 006262 89 EILVLVFDEPL-----AVGEGILRIIFYGKLN-EHTKGFYKCSYVEKEVKKNMAVTQFEAVDARRCFPCWDEPALKATFK 162 (653)
Q Consensus 89 ~~l~i~l~~~l-----~~g~~~l~i~y~g~~~-~~~~G~y~~~y~~~g~~~~~~~T~~ep~~Ar~~fPc~DeP~~ka~f~ 162 (653)
+.+.|....+. .++...+.+.+.+... +.+.|+|++.+.. ..+++||||+.+||+||||+|+|+.||+|+
T Consensus 87 ~~~~i~~~~~~~~~~~~~~~l~i~~~~~~~~s~~~~~Gly~~~~~~----~~~~~TQ~Ea~~aR~~fpc~D~P~~katf~ 162 (859)
T COG0308 87 DALTITVAPPIPERSERPFTLAITYEFTGPVSNDTLEGLYRSGYGG----KPYLITQCEAEGARRIFPCIDEPDVKATFT 162 (859)
T ss_pred ccceeeeccccccccCCCccEEEEEEecccccCccccceeecCCCC----CeeEEeecccCCCceeeecCCCCCCcceeE
Confidence 44444433332 2346778888888877 6788999887543 678899999999999999999999999999
Q ss_pred EEEEeCCCCeEEecCcccceee-cCCEEEEEEEeCCcccceEEEEEEecceeeeeccc---CCeEEEEEecCCCcchhHH
Q 006262 163 ITLDIPSELTALSNMPILDEKL-NGNLKTVYFEESPVMSTYLVAFVVGLFDHIEDTTT---NGVKVHVYCPVGKSSEGKH 238 (653)
Q Consensus 163 l~i~~p~~~~~~sn~~~~~~~~-~~~~~~~~f~~t~~mstyl~a~~vg~f~~~~~~~~---~g~~v~v~~~~~~~~~~~~ 238 (653)
++|+.++++.++|||+...... .+++.+++|..++|||||++|+++|+|..++.... +++++++|++++....+++
T Consensus 163 ~~i~~~k~~~~iSN~~~~~~~~~~~g~~~~~f~~~~~mptYL~al~~G~~~~~~~~~~~~~~~v~l~iy~~~g~~~~a~~ 242 (859)
T COG0308 163 LTIRADKGPKLISNGNLIDGGTLVDGRKIVKFEDTPPMPTYLFALVAGDLEVFRDKFDTRSRDVPLEIYVPPGVLDRAKY 242 (859)
T ss_pred EEEEecCcceeeecCCccccccccCCcEEEEEcCCCCcchHhhheeeecceeeeeeeccCCCCeeEEEEecCcchhhhhh
Confidence 9999999999999999987643 35589999999999999999999999988775542 4799999999988999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCcceeecCCCCcccccccccceeecceeeecCCCCCHHHHHHHHHHHHHHHHHHHhc
Q 006262 239 ALDVAIKSLGIYTEFFSTPYPLPKLDMVAVSEFHAGAMENFGLIVYRENELLYNEKTSTANRKQIMAISTSHEVAHQWFG 318 (653)
Q Consensus 239 ~l~~~~~~l~~~e~~fg~~yp~~kld~V~~P~~~~game~~Gli~~~e~~ll~~~~~s~~~~~~~~~~~iaHElaHqWfG 318 (653)
+++.+.+.++|||++||+|||+++ ++|++|+|+.|||||||+++|++..+|.+++.++....++++.+|+||+||||||
T Consensus 243 ~~~~~~~~~~~~e~~fg~~y~l~~-~~V~v~~f~~GaMEN~Gl~tf~~~~ll~~~~~at~~~~~~~~~viaHElaHqWfG 321 (859)
T COG0308 243 ALDETKRSIEFYEEYFGLPYALPI-DIVAVPDFSAGAMENWGLVTFREKYLLADPETATDSDYENVEEVIAHELAHQWFG 321 (859)
T ss_pred hHHHHHHHhhhHHHhcCCCCCCcc-cEEeccCCCCccccccceeEEeeeEEeeCcccchhHHHHHHHHHHHHHHhhhccc
Confidence 999999999999999999999999 9999999999999999999999999999988888888899999999999999999
Q ss_pred CccCccccchhHhhhhHHHHHHHHHHhhhCC-chhhHHHHHHHhhh-hhccccccCCCCceeecCChhhhhhhcccccch
Q 006262 319 NLVTMEWWTHLWLNEGFATWISYMATDIMFP-EWKMWTQFLRQTSH-GLRLDAQEQSHPIEVEVHRADEIDQVFDAISYN 396 (653)
Q Consensus 319 nlVt~~~w~d~WL~EGfA~y~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~D~~~~~~p~~~~~~~~~~~~~~f~~i~Y~ 396 (653)
|+|||+||+++|||||||+|+++.+.+.++| .|..|..+...... ++..|+...+||+...+.++.+++..||.++|.
T Consensus 322 nlVT~~~W~~lWLnEgfat~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~hPi~~~~~~~~ei~~~fD~i~Y~ 401 (859)
T COG0308 322 NLVTMKWWDDLWLNEGFATFREVLWSEDLGGRAWKRWEDFRTLRTSIALAEDSLPSSHPIRVDVYDPKEINDFFDAIVYE 401 (859)
T ss_pred ceeeccCHHHHHHhhhhHHHHHHHHHHHhcchHHHHHHHHHHHhhhHHHhhccccccCCcccCCCCccchhhhcchhhcc
Confidence 9999999999999999999999999999999 88888888766554 788899999999999999999999999999999
Q ss_pred hhhHHHHHHHHhhCHHHHHHHHHHHHHhcccCCCChHHHHHHHHhhcCCCHHHHHHHHhcCCCcceEEEEEeCC-EEEEE
Q 006262 397 KGSAVIRMLQSYLGEDIFQKSLSLYMKKYAWKNVETEDLWSVLSEESGINITSLMECWTKQKGHPVVYVNCKDN-LLEFK 475 (653)
Q Consensus 397 Kg~~vl~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~sg~~l~~~~~~W~~~~G~P~l~v~~~~~-~i~l~ 475 (653)
||++|+|||+.++|++.|+++|+.|+++|++++++++|||+++++++|++++++|++|+.|+|+|++.|+..++ .++++
T Consensus 402 KGs~vlrml~~~lG~e~F~kgl~~yf~~h~~~~~~~~Dl~~a~~~~sg~dl~~~~~~w~~q~G~P~l~v~~~~~~~~~l~ 481 (859)
T COG0308 402 KGASVLRMLETLLGEEAFRKGLSLYFKRHAGGNATTMDLWKALEDASGKDLSAFFESWLSQAGYPVLTVSVRYDDFFKLT 481 (859)
T ss_pred hhHHHHHHHHHHHCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhCCcHHHHHHHHHhCCCCCceeeeeeccccEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887 78999
Q ss_pred EEeeecCCCCCCCeeEEEEEEEECCcccceeeEeecceeEEEecCCCCCCCCccccccccCCCceEEeccCceeEEEEEc
Q 006262 476 QSQFVSSGLQGDGRWTIPITLSLGSYNNQRNFLLESQSQSVDISEMLPSSDGKLCSFKECDETLWIKVNVEQSGFYRVIY 555 (653)
Q Consensus 476 Q~rf~~~~~~~~~~w~iPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~gyyrV~Y 555 (653)
|+||...+......|.||+.+............+.+...++.+.... .+.-.-+++|....++|++.|
T Consensus 482 ~~q~~~~~~~~~~~~~iPl~~~~~~~~~~~~~~~~~~~~t~~~~~~~------------~~~~~~~~~~~~~~~~~~~~y 549 (859)
T COG0308 482 QKQFTPPGQEEKRPWPIPLAIKLLDGGGVKVLLLTEGEQTVTFELVG------------IPPFPSLKVNDSAPVFYRVDY 549 (859)
T ss_pred EEEeccCCCccCceeeeccEEEecCCCCceeeeeeccceEEEEeccc------------CCccceeeccCCccceEEEec
Confidence 99998776333458999999988754422334455555566665321 011246889999999999999
Q ss_pred CHHHHHHHHHHHHcCCCChhcHHHHHHHHHHHHHcCCCCHHHHHHHHHhhhcCCCHHHH
Q 006262 556 DDELSARLRKAVENNCLSAADKLGILDDMLALCQACKQPLSYLLLLLDAHRKEHDSMVL 614 (653)
Q Consensus 556 d~~~w~~l~~~l~~~~i~~~~ra~li~D~~~l~~~g~l~~~~~l~l~~~l~~E~~~~~w 614 (653)
+.+.|..++.... .+...+|+.++.|..++..+|..+...+...+....++....++
T Consensus 550 ~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 606 (859)
T COG0308 550 SDQSLSKLLQHDP--RLEAAQRLALVADRRALTAAGKGSAEDKLALVSRAFNAELLYVS 606 (859)
T ss_pred CHHHHHHHHhhhh--hhhHHHHHhhhhhHHHHHHhcccchhHHHHHHHHHhhhhhhHHH
Confidence 9999988877643 67899999999999999999999999988877665544444443
No 4
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=100.00 E-value=4.2e-83 Score=728.12 Aligned_cols=507 Identities=25% Similarity=0.316 Sum_probs=414.2
Q ss_pred CCCceeeEEEEEEEEccCCceEEEEEEEEEEEecccCEEEEEecCceeEEEEEEecCCccccccceeecCCCcEEEEEec
Q 006262 17 PKFAIPSYYDLYIKLDLVACTFSGNVNININIIEKTNFIVLNALELNVHEVLFTSSHNQEYRPSDAIMDKDDEILVLVFD 96 (653)
Q Consensus 17 p~~~~p~~Y~l~l~~d~~~~~f~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~l~i~l~ 96 (653)
|..+...||+|+|+++++..+++|+++|++...++...|+||+.+|+|.+|.+++ ..+ ....+..+++.++|..
T Consensus 4 ~~~~~v~~~~L~l~l~~~~~~v~g~~~i~~~~~~~~~~l~Ld~~~L~I~sV~v~g---~~~--~~~~~~~~~~~L~I~~- 77 (863)
T TIGR02414 4 PPPFLIEKTHLDFDLHEEETVVRARLTVRRNPDGNGAPLVLDGEELKLLSIAIDG---KPL--AAGDYQLDDETLTIAS- 77 (863)
T ss_pred CCCceEEEEEEEEEEeCCCeEEEEEEEEEEecCCCCCcEEEEecCCEEEEEEECC---Eec--CcceEEEcCCEEEEee-
Confidence 5567899999999999999999999999999877777899999999999999862 111 1233555667888874
Q ss_pred cCccceeEEEEEEEEeee--cCCCcceEEeeeecCCeeeeeeecccccCCCCeeeeecCCCCCeeEEEEEEEeCCC-C-e
Q 006262 97 EPLAVGEGILRIIFYGKL--NEHTKGFYKCSYVEKEVKKNMAVTQFEAVDARRCFPCWDEPALKATFKITLDIPSE-L-T 172 (653)
Q Consensus 97 ~~l~~g~~~l~i~y~g~~--~~~~~G~y~~~y~~~g~~~~~~~T~~ep~~Ar~~fPc~DeP~~ka~f~l~i~~p~~-~-~ 172 (653)
+ ++.++|+|.|.+.. +.+..|+|++.+ +++|||||.+||++|||||+|++||+|+++|++|++ | +
T Consensus 78 --~-~~~~~l~i~~~~~p~~n~~l~GlY~s~~--------~~~TQ~Ep~gaR~ifpc~DeP~~kAtf~vtI~~p~~~y~v 146 (863)
T TIGR02414 78 --V-PESFTLEIETEIHPEENTSLEGLYKSGG--------NFCTQCEAEGFRRITYFPDRPDVMSRYTVTITADKKKYPV 146 (863)
T ss_pred --C-CccEEEEEEEEeecccCCCCeEEEEeCC--------eEEEEecCCCCCcCCCCCCCCCCceEEEEEEEECCCcceE
Confidence 2 35789999997644 456789999753 578999999999999999999999999999999986 6 5
Q ss_pred EEecCcccce-eecCCEEEEEEEeCCcccceEEEEEEecceeeeec----ccCCeEEEEEecCCCcchhHHHHHHHHHHH
Q 006262 173 ALSNMPILDE-KLNGNLKTVYFEESPVMSTYLVAFVVGLFDHIEDT----TTNGVKVHVYCPVGKSSEGKHALDVAIKSL 247 (653)
Q Consensus 173 ~~sn~~~~~~-~~~~~~~~~~f~~t~~mstyl~a~~vg~f~~~~~~----~~~g~~v~v~~~~~~~~~~~~~l~~~~~~l 247 (653)
++|||+++.. ...+++.+++|+.++|||+|++||+||+|+.++.. ...++++++|++|+..+.++++++.++++|
T Consensus 147 ~lSNg~~~~~~~~~~g~~~~~f~~t~pmptYLfA~vaGdf~~~~~~~~t~sg~~v~l~iy~~p~~~~~~~~al~~~~~~L 226 (863)
T TIGR02414 147 LLSNGNKIASGELPDGRHWAEWEDPFPKPSYLFALVAGDLDVLEDTFTTKSGREVALRVYVEEGNKDKCDHAMESLKKAM 226 (863)
T ss_pred EEeCCccccceecCCCeEEEEEeCCCCcChhHheEEEeCCEEEEEEeeccCCCceEEEEEEccCcHHHHHHHHHHHHHHH
Confidence 6899987765 34577889999999999999999999999987642 224589999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCcceeecCCCCcccccccccceeecceeeecCCCCCHHHHHHHHHHHHHHHHHHHhcCccCccccc
Q 006262 248 GIYTEFFSTPYPLPKLDMVAVSEFHAGAMENFGLIVYRENELLYNEKTSTANRKQIMAISTSHEVAHQWFGNLVTMEWWT 327 (653)
Q Consensus 248 ~~~e~~fg~~yp~~kld~V~~P~~~~game~~Gli~~~e~~ll~~~~~s~~~~~~~~~~~iaHElaHqWfGnlVt~~~w~ 327 (653)
++||++||+|||++|+++|++|+|..||||||||++|++..++.++...+...++.+..+||||+|||||||+|||+||+
T Consensus 227 ~~~E~~fG~pYPl~k~diVavpdf~~GaMEN~GLi~f~e~~lL~~~~~~td~~~~~i~~VIaHElaHqWfGNlVT~~~W~ 306 (863)
T TIGR02414 227 KWDEEVFGLEYDLDIFMIVAVDDFNMGAMENKGLNIFNSKYVLADPETATDADYERIESVIAHEYFHNWTGNRVTCRDWF 306 (863)
T ss_pred HHHHHHhCCCCChhhccEEecCCCCCccccccceeccccceEEeCCCCCCHHHHHHHHHHHHHHHHHHHhcceeeecchh
Confidence 99999999999999999999999999999999999999999999988767777788899999999999999999999999
Q ss_pred hhHhhhhHHHHHHHHHHhhhCCchhhHHHHHHHhh-hhhccccccCCCCceeecCChhhhhhhcccccchhhhHHHHHHH
Q 006262 328 HLWLNEGFATWISYMATDIMFPEWKMWTQFLRQTS-HGLRLDAQEQSHPIEVEVHRADEIDQVFDAISYNKGSAVIRMLQ 406 (653)
Q Consensus 328 d~WL~EGfA~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~p~~~~~~~~~~~~~~f~~i~Y~Kg~~vl~mL~ 406 (653)
++|||||||+|++..+.....+............. .++..|+...+||+.. .+..+++..|+.++|.||++|+|||+
T Consensus 307 ~LWLnEGfAty~e~~~~~~~~~~~~~~~~~~~~lr~~~f~~D~~p~~~Pi~~--~~~~~i~~~y~~i~Y~KGA~vLrML~ 384 (863)
T TIGR02414 307 QLSLKEGLTVFRDQEFSADMTSRAVKRIEDVRLLRAHQFPEDAGPMAHPVRP--ESYVEINNFYTATVYEKGAEVIRMLH 384 (863)
T ss_pred hhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhcccccccCCCCCC--cchhhHHhccchHHhHHHHHHHHHHH
Confidence 99999999999997666554443111000011111 2355688888888864 34567788899999999999999999
Q ss_pred HhhCHHHHHHHHHHHHHhcccCCCChHHHHHHHHhhcCCCHHHHHHHHhcCCCcceEEEEEeC----C--EEEEEEEeee
Q 006262 407 SYLGEDIFQKSLSLYMKKYAWKNVETEDLWSVLSEESGINITSLMECWTKQKGHPVVYVNCKD----N--LLEFKQSQFV 480 (653)
Q Consensus 407 ~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~sg~~l~~~~~~W~~~~G~P~l~v~~~~----~--~i~l~Q~rf~ 480 (653)
..||++.|+++|+.|+++|++++++++|||+++++++|.|+.+|+ +|+.|+|+|+|+|++++ + +++++|.+..
T Consensus 385 ~~LGee~F~~gLr~Yl~r~~~~~at~~Df~~ale~asg~dL~~f~-~W~~q~G~P~v~v~~~yd~~~~~~~lt~~Q~~~~ 463 (863)
T TIGR02414 385 TLLGEEGFRKGMDLYFSRHDGQAVTCEDFVAAMEDASGRDLNQFR-RWYSQAGTPVLEVKENYDAAKKTYTLTVRQSTPP 463 (863)
T ss_pred HHhCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhCCCHHHHH-HHHcCCCCceeEEEEEEcCCCCEEEEEEEEeCCC
Confidence 999999999999999999999999999999999999999999985 89999999999999863 2 4555565432
Q ss_pred cCCCCCCCeeEEEEEEEEC--Cccc-----------ceeeEeecceeEEEecCCCCCCCCccccccccCCCceEEeccCc
Q 006262 481 SSGLQGDGRWTIPITLSLG--SYNN-----------QRNFLLESQSQSVDISEMLPSSDGKLCSFKECDETLWIKVNVEQ 547 (653)
Q Consensus 481 ~~~~~~~~~w~iPl~~~~~--~~~~-----------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~wi~~N~~~ 547 (653)
..+......|.|||.+..- ++.. ...+.++++++++.++.+. . .-.+-++.+.
T Consensus 464 ~~~~~~~~~~~iPl~i~l~~~~G~~~~~~~~~~~~~~~~l~l~~~~~~f~f~~~~-----------~---~p~~sl~r~f 529 (863)
T TIGR02414 464 TPGQTEKKPLHIPIAVGLLGPNGRKLMLSLDGERDTTRVLELTEAEQTFVFEGIA-----------E---KPVPSLLRGF 529 (863)
T ss_pred CCCCCcCCceEEEEEEEEEeCCCCEeeecccCCCCcceEEEEccCEEEEEEcCCC-----------C---CCeeeecCCC
Confidence 2222334589999998652 2221 1235677888888887532 1 1247788999
Q ss_pred eeEEEEEcCH
Q 006262 548 SGFYRVIYDD 557 (653)
Q Consensus 548 ~gyyrV~Yd~ 557 (653)
+.+-++.|+-
T Consensus 530 sapv~l~~~~ 539 (863)
T TIGR02414 530 SAPVNLEYPY 539 (863)
T ss_pred CceEEEeCCC
Confidence 9999998763
No 5
>PRK14015 pepN aminopeptidase N; Provisional
Probab=100.00 E-value=1.6e-82 Score=725.66 Aligned_cols=517 Identities=26% Similarity=0.333 Sum_probs=417.4
Q ss_pred ccccccCCCCCCCCceeeEEEEEEEEccCCceEEEEEEEEEEE-ecccCEEEEEecCceeEEEEEEecCCccccccceee
Q 006262 6 NRNQFKSQARLPKFAIPSYYDLYIKLDLVACTFSGNVNININI-IEKTNFIVLNALELNVHEVLFTSSHNQEYRPSDAIM 84 (653)
Q Consensus 6 ~~~~~~~~~rLp~~~~p~~Y~l~l~~d~~~~~f~G~v~I~~~~-~~~~~~i~L~~~~l~i~~v~~~~~~~~~~~~~~~~~ 84 (653)
-...+..+|+-| .+...||+|+|+++++..+++|+++|+... .++.+.|+||+.+|+|.+|.+++ ..+... .+
T Consensus 6 ~~~~~~~dy~~~-~~~V~h~dL~l~ld~~~~~v~g~~~i~~~~~~~~~~~l~LD~~~L~I~sV~v~G---~~~~~~--~~ 79 (875)
T PRK14015 6 PQAIYLKDYRPP-DYLIDTVDLDFDLDPDKTRVTARLQVRRNPDAAHSAPLVLDGEDLELLSLALDG---QPLAPS--AY 79 (875)
T ss_pred CCcEehhccCCC-CeEEEEEEEEEEEcCCCcEEEEEEEEEEccCCCCCceEEEEcCCCEEEEEEECC---EEcCcc--ce
Confidence 344566666544 588999999999999999999999999876 46678999999999999999863 111111 44
Q ss_pred cCCCcEEEEEeccCccceeEEEEEEEEeeec--CCCcceEEeeeecCCeeeeeeecccccCCCCeeeeecCCCCCeeEEE
Q 006262 85 DKDDEILVLVFDEPLAVGEGILRIIFYGKLN--EHTKGFYKCSYVEKEVKKNMAVTQFEAVDARRCFPCWDEPALKATFK 162 (653)
Q Consensus 85 ~~~~~~l~i~l~~~l~~g~~~l~i~y~g~~~--~~~~G~y~~~y~~~g~~~~~~~T~~ep~~Ar~~fPc~DeP~~ka~f~ 162 (653)
..+++.|+|.. + ++.++|+|.|.+... ....|+|++.+ +++|||||.+||+||||+|+|+.||+|+
T Consensus 80 ~~~~~~L~I~~---l-~~~~~l~I~y~~~P~~n~~l~Gly~s~~--------~~~TQ~Ep~gAR~~fPc~D~P~~KAtf~ 147 (875)
T PRK14015 80 ELDEEGLTIEN---L-PDRFTLEIETEIDPEANTALEGLYRSGG--------MFCTQCEAEGFRRITYFLDRPDVLARYT 147 (875)
T ss_pred EEcCCEEEEec---C-CccEEEEEEEEEecCCCCCceeeEEECC--------EEEEeccccCcCCcccCCCCCCCCeeEE
Confidence 55577888873 3 335899999987653 45689998642 5789999999999999999999999999
Q ss_pred EEEEeCCC-C-eEEecCccccee-ecCCEEEEEEEeCCcccceEEEEEEecceeeeec--c--cCCeEEEEEecCCCcch
Q 006262 163 ITLDIPSE-L-TALSNMPILDEK-LNGNLKTVYFEESPVMSTYLVAFVVGLFDHIEDT--T--TNGVKVHVYCPVGKSSE 235 (653)
Q Consensus 163 l~i~~p~~-~-~~~sn~~~~~~~-~~~~~~~~~f~~t~~mstyl~a~~vg~f~~~~~~--~--~~g~~v~v~~~~~~~~~ 235 (653)
++|++|++ | +++|||+++++. ..+++.+++|+.++|||+|++||++|+|+.++.. + ..++++++|++|+..+.
T Consensus 148 itI~~p~~~~~~~lSNG~l~~~~~~~~g~~~~~w~~~~PmpsYL~Al~aGdf~~~~d~~~~~~g~~vpl~iy~~p~~~~~ 227 (875)
T PRK14015 148 VRIEADKAKYPVLLSNGNLVESGELPDGRHWATWEDPFPKPSYLFALVAGDLDVLEDTFTTRSGREVALEIYVEPGNLDK 227 (875)
T ss_pred EEEEEccccCeEEecCCccccceeccCCeEEEEEEeCCCcccceEEEEEeCCEEEEEEeeccCCCeEEEEEEEeCCcHHH
Confidence 99999994 8 689999988774 4677889999999999999999999999987642 2 23599999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCCCCCcceeecCCCCcccccccccceeecceeeecCCCCCHHHHHHHHHHHHHHHHHH
Q 006262 236 GKHALDVAIKSLGIYTEFFSTPYPLPKLDMVAVSEFHAGAMENFGLIVYRENELLYNEKTSTANRKQIMAISTSHEVAHQ 315 (653)
Q Consensus 236 ~~~~l~~~~~~l~~~e~~fg~~yp~~kld~V~~P~~~~game~~Gli~~~e~~ll~~~~~s~~~~~~~~~~~iaHElaHq 315 (653)
++++++.+.++|++||++||.|||++|+++|++|+|..|||||||+++|++..++.+++..+...+..+..+||||+|||
T Consensus 228 ~~~al~~~~~~L~~~E~~FG~pYP~~k~diVavp~f~~GaMEN~Gl~~f~~~~lL~~~~~~t~~~~~~i~~vIaHElaHq 307 (875)
T PRK14015 228 CDHAMDSLKKSMKWDEERFGLEYDLDIFMIVAVDDFNMGAMENKGLNIFNSKYVLADPETATDADYERIESVIAHEYFHN 307 (875)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCChhhhCEEeCCCCCCcccccccccccccceEecCcccCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998887666667778899999999999
Q ss_pred HhcCccCccccchhHhhhhHHHHHHHHHHhhhCCc-hhhHHHHHHHhhhhhccccccCCCCceeecCChhhhhhhccccc
Q 006262 316 WFGNLVTMEWWTHLWLNEGFATWISYMATDIMFPE-WKMWTQFLRQTSHGLRLDAQEQSHPIEVEVHRADEIDQVFDAIS 394 (653)
Q Consensus 316 WfGnlVt~~~w~d~WL~EGfA~y~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~p~~~~~~~~~~~~~~f~~i~ 394 (653)
||||+|||+||+++|||||||+|++..+.....+. .............++..|+...+||+.. .+..+++..|+.++
T Consensus 308 WFGNlVT~~~W~dLWLnEGFAty~e~~~~~~~~~~~~~~~~~~~~l~~~~~~~D~~~~a~pi~p--~~~~~i~~~f~~~~ 385 (875)
T PRK14015 308 WTGNRVTCRDWFQLSLKEGLTVFRDQEFSADLGSRAVKRIEDVRVLRAAQFAEDAGPMAHPVRP--DSYIEINNFYTATV 385 (875)
T ss_pred HHhCcceecchhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccccccCCCCCC--cchhhHHhcccchh
Confidence 99999999999999999999999987766554332 1111110000012345577777788753 24457778899999
Q ss_pred chhhhHHHHHHHHhhCHHHHHHHHHHHHHhcccCCCChHHHHHHHHhhcCCCHHHHHHHHhcCCCcceEEEEEeC----C
Q 006262 395 YNKGSAVIRMLQSYLGEDIFQKSLSLYMKKYAWKNVETEDLWSVLSEESGINITSLMECWTKQKGHPVVYVNCKD----N 470 (653)
Q Consensus 395 Y~Kg~~vl~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~sg~~l~~~~~~W~~~~G~P~l~v~~~~----~ 470 (653)
|.||+++||||+..||++.|+++|+.|+++|++++++++|||+++++++|.|+.+|+ +|++|+|+|+++|+++. +
T Consensus 386 Y~KGA~vLrMLr~~lGde~F~~gLr~Yl~~~~~~~at~~Df~~ale~asg~DL~~f~-~W~~q~G~P~l~v~~~~d~~~~ 464 (875)
T PRK14015 386 YEKGAEVIRMLHTLLGEEGFRKGMDLYFERHDGQAVTCEDFVAAMEDASGRDLSQFR-RWYSQAGTPRVTVSDEYDAAAG 464 (875)
T ss_pred hhHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhCCCHHHHH-HHHcCCCCCeEEEEEEEcCCCC
Confidence 999999999999999999999999999999999999999999999999999999986 89999999999999863 3
Q ss_pred --EEEEEEEeeecCCCCCCCeeEEEEEEEECC--ccc----------ceeeEeecceeEEEecCCCCCCCCccccccccC
Q 006262 471 --LLEFKQSQFVSSGLQGDGRWTIPITLSLGS--YNN----------QRNFLLESQSQSVDISEMLPSSDGKLCSFKECD 536 (653)
Q Consensus 471 --~i~l~Q~rf~~~~~~~~~~w~iPl~~~~~~--~~~----------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 536 (653)
+++++|......+......|.|||.+..-+ +.. ...+.++++++++.++.+. ..
T Consensus 465 ~~~ltl~Q~~~~~~~~~~~~~~~iPl~i~l~~~~G~~~~~~~~~~~~~~~l~l~~~~q~f~f~~~~-----------~~- 532 (875)
T PRK14015 465 TYTLTLSQSTPPTPGQPEKQPLHIPVAIGLLDPDGKELPLQLEGEPVERVLELTEAEQTFTFENVA-----------ER- 532 (875)
T ss_pred EEEEEEEEeCCCCCCCCCCceEEEEEEEEEEcCCCceeeccccCCccceEEEEcCCeeEEEEcCCC-----------CC-
Confidence 355666543222333345899999996422 221 2236677888888887531 12
Q ss_pred CCceEEeccCceeEEEEEcCH
Q 006262 537 ETLWIKVNVEQSGFYRVIYDD 557 (653)
Q Consensus 537 ~~~wi~~N~~~~gyyrV~Yd~ 557 (653)
-.+.++.+.+.+-++.|+-
T Consensus 533 --p~~s~~r~fsapv~~~~~~ 551 (875)
T PRK14015 533 --PVPSLLRGFSAPVKLEYDY 551 (875)
T ss_pred --ceEEecCCCCCcEEEeCCC
Confidence 2478889999999998873
No 6
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.
Probab=100.00 E-value=4.7e-78 Score=670.08 Aligned_cols=426 Identities=22% Similarity=0.352 Sum_probs=348.7
Q ss_pred CCCCceeeEEEEEEEEccCCceEEEEEEEEEEEecc-cCEEEEEecCceeEEEEEEecCCccccccceee----cCCCcE
Q 006262 16 LPKFAIPSYYDLYIKLDLVACTFSGNVNININIIEK-TNFIVLNALELNVHEVLFTSSHNQEYRPSDAIM----DKDDEI 90 (653)
Q Consensus 16 Lp~~~~p~~Y~l~l~~d~~~~~f~G~v~I~~~~~~~-~~~i~L~~~~l~i~~v~~~~~~~~~~~~~~~~~----~~~~~~ 90 (653)
=|..++|.||+|+|++|+++.+|+|+|+|++++.++ ++.|+||+.+|+|++|.+++ ....+.. +..++.
T Consensus 7 n~~~~~~~hy~L~L~vd~~~~~~~G~v~i~l~~~~~~~~~i~Ld~~~L~I~~V~v~g------~~~~~~~~~~~~~~g~~ 80 (601)
T TIGR02411 7 NYKDFRTSHTDLNLSVDFTKRKLSGSVTFTLQSLTDNLNSLVLDTSYLDIQKVTING------LPADFAIGERKEPLGSP 80 (601)
T ss_pred CCCCcEEEEEEEEEEEeecCCEEEEEEEEEEEECCCCCcEEEEECCCCEEEEEEECC------cccceEeccccCCCCCe
Confidence 477899999999999999999999999999999765 58899999999999998863 1222222 235688
Q ss_pred EEEEeccCccce-eEEEEEEEEeeecCCCcceEEeeee-cCCeeeeeeecccccCCCCeeeeecCCCCCeeEEEEEEEeC
Q 006262 91 LVLVFDEPLAVG-EGILRIIFYGKLNEHTKGFYKCSYV-EKEVKKNMAVTQFEAVDARRCFPCWDEPALKATFKITLDIP 168 (653)
Q Consensus 91 l~i~l~~~l~~g-~~~l~i~y~g~~~~~~~G~y~~~y~-~~g~~~~~~~T~~ep~~Ar~~fPc~DeP~~ka~f~l~i~~p 168 (653)
|+|.+++++.+| .++|+|.|+|..+ ..|++...+. .+|..+++++|||||.+||+||||||+|++||+|+++|++|
T Consensus 81 L~I~l~~~l~~g~~~~l~I~Y~~~~~--~~gl~~~~~~~t~g~~~py~~Tq~qp~~AR~~fPC~D~P~~Katf~~~I~~P 158 (601)
T TIGR02411 81 LTISLPIATSKNKELVLNISFSTTPK--CTALQWLTPEQTSGKKHPYLFSQCQAIHARSVIPCQDTPSVKSTYTAEVESP 158 (601)
T ss_pred EEEEeCCccCCCceEEEEEEEeecCC--CceeEEecccccCCCCCCEEEECCcccchheeeeecCCcccceEEEEEEeeC
Confidence 999999999999 8999999999753 3577654432 34667788899999999999999999999999999999999
Q ss_pred CCCeEEecCcccceeecCCEEEEEEEeCCcccceEEEEEEecceeeeecccCCeEEEEEecCCCcchhHHHHH-HHHHHH
Q 006262 169 SELTALSNMPILDEKLNGNLKTVYFEESPVMSTYLVAFVVGLFDHIEDTTTNGVKVHVYCPVGKSSEGKHALD-VAIKSL 247 (653)
Q Consensus 169 ~~~~~~sn~~~~~~~~~~~~~~~~f~~t~~mstyl~a~~vg~f~~~~~~~~~g~~v~v~~~~~~~~~~~~~l~-~~~~~l 247 (653)
++|++||....... ++..+++|..++|||+||+||+||+|+..+ .|.++++|++|+....+++++. .+.++|
T Consensus 159 --~~av~sg~~~~~~~-~~~~~~~F~~t~pmptYLia~avG~~~~~~----~g~~~~v~~~p~~~~~~~~~~~~~~~~~l 231 (601)
T TIGR02411 159 --LPVLMSGIPDGETS-NDPGKYLFKQKVPIPAYLIALASGDLASAP----IGPRSSVYSEPEQLEKCQYEFEHDTENFI 231 (601)
T ss_pred --cceeccCCcccccc-CCCceEEEEeCCCcchhhheeeeccceecc----cCCceEEEccchhHHHHHHHHHHhHHHHH
Confidence 88887765544332 345678999999999999999999998653 3678999999998888888888 899999
Q ss_pred HHHHHHhCCCCCCCCcceeec-CCCCcccccccccceeecceeeecCCCCCHHHHHHHHHHHHHHHHHHHhcCccCcccc
Q 006262 248 GIYTEFFSTPYPLPKLDMVAV-SEFHAGAMENFGLIVYRENELLYNEKTSTANRKQIMAISTSHEVAHQWFGNLVTMEWW 326 (653)
Q Consensus 248 ~~~e~~fg~~yp~~kld~V~~-P~~~~game~~Gli~~~e~~ll~~~~~s~~~~~~~~~~~iaHElaHqWfGnlVt~~~w 326 (653)
+++|+++| |||++|+|+|++ |+|+.||||||| ++|.+..++.+.. ....+||||||||||||+||++||
T Consensus 232 ~~~e~~~~-pYp~~k~d~vvlpp~f~~GgMEN~~-ltf~~~~ll~~d~--------s~~~viaHElAHqWfGNlVT~~~W 301 (601)
T TIGR02411 232 KTAEDLIF-PYEWGQYDLLVLPPSFPYGGMENPN-LTFATPTLIAGDR--------SNVDVIAHELAHSWSGNLVTNCSW 301 (601)
T ss_pred HHHHHhCC-CCcCccceEEEecCccccccccccc-ceeeccccccCCh--------hhhhhHHHHHHhhccCceeecCCc
Confidence 99999877 999999999987 789999999999 5777776775432 135799999999999999999999
Q ss_pred chhHhhhhHHHHHHHHHHhhhCCchhhH-HHHHH--HhhhhhccccccCCCCceeecCChh--hhhhhcccccchhhhHH
Q 006262 327 THLWLNEGFATWISYMATDIMFPEWKMW-TQFLR--QTSHGLRLDAQEQSHPIEVEVHRAD--EIDQVFDAISYNKGSAV 401 (653)
Q Consensus 327 ~d~WL~EGfA~y~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~D~~~~~~p~~~~~~~~~--~~~~~f~~i~Y~Kg~~v 401 (653)
+|+|||||||+|++.+++++++|++... ..+.. .....+ +.+...+|+...+.+.. +++..|+.++|.||+++
T Consensus 302 ~d~WLnEGfaty~e~~~~~~~~~e~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~dp~~~f~~i~Y~KGa~~ 379 (601)
T TIGR02411 302 EHFWLNEGWTVYLERRIVGRLYGEKTRHFSALIGWGELQESV--KTLGEDPEYTKLVVDLKDNDPDDAFSSVPYEKGFNF 379 (601)
T ss_pred hHHHHHhhHHHHHHHHHHHHhcCcHHHHHHHHHhHHHHHHHH--HhhcCCCCCCcccccCCCCChhhhccccchhhHHHH
Confidence 9999999999999999999999986431 11111 111112 12233344443332222 56789999999999999
Q ss_pred HHHHHHhhC-HHHHHHHHHHHHHhcccCCCChHHHHHHHHhhc-----CCCHHHH-HHHHhcCCCcceEEEEEe
Q 006262 402 IRMLQSYLG-EDIFQKSLSLYMKKYAWKNVETEDLWSVLSEES-----GINITSL-MECWTKQKGHPVVYVNCK 468 (653)
Q Consensus 402 l~mL~~~lG-~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~s-----g~~l~~~-~~~W~~~~G~P~l~v~~~ 468 (653)
|+||+..|| ++.|+++||.|+++|++++++++|||++|.++. +.+++.+ |++|++++|+|.+.+..+
T Consensus 380 L~mL~~~lG~~~~F~~~lr~Yl~~~~~~s~~t~df~~~l~~~~~~~~~~~~l~~~~~~~Wl~~~G~P~~~~~~~ 453 (601)
T TIGR02411 380 LFYLEQLLGGPAVFDPFLKHYFKKFAYKSLDTYQFKDALYEYFKDTGKVDKLNAVDWDTWLYSPGLPPVKPNFD 453 (601)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhccccchhhhhhHHHHhcCCCCCCcCCCCC
Confidence 999999999 999999999999999999999999999998763 2456666 899999999999876644
No 7
>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification.; InterPro: IPR014782 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M1 (clan MA(E)), the type example being aminopeptidase N from Homo sapiens (Human). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Membrane alanine aminopeptidase (3.4.11.2 from EC) is part of the HEXXH+E group; it consists entirely of aminopeptidases, spread across a wide variety of species []. Functional studies show that CD13/APN catalyzes the removal of single amino acids from the amino terminus of small peptides and probably plays a role in their final digestion; one family member (leukotriene-A4 hydrolase) is known to hydrolyse the epoxide leukotriene-A4 to form an inflammatory mediator []. This hydrolase has been shown to have aminopeptidase activity [], and the zinc ligands of the M1 family were identified by site-directed mutagenesis on this enzyme [] CD13 participates in trimming peptides bound to MHC class II molecules [] and cleaves MIP-1 chemokine, which alters target cell specificity from basophils to eosinophils []. CD13 acts as a receptor for specific strains of RNA viruses (coronaviruses) which cause a relatively large percentage of upper respiratory trace infections. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 2XQ0_A 2XPY_A 2XPZ_A 3SE6_B 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A ....
Probab=100.00 E-value=9e-77 Score=640.24 Aligned_cols=384 Identities=46% Similarity=0.780 Sum_probs=342.3
Q ss_pred CCCCCceeeEEEEEEEEccCCceEEEEEEEEEEEecccCEEEEEecCceeEEEEEEecC-CccccccceeecCCCcEEEE
Q 006262 15 RLPKFAIPSYYDLYIKLDLVACTFSGNVNININIIEKTNFIVLNALELNVHEVLFTSSH-NQEYRPSDAIMDKDDEILVL 93 (653)
Q Consensus 15 rLp~~~~p~~Y~l~l~~d~~~~~f~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~~~~~~-~~~~~~~~~~~~~~~~~l~i 93 (653)
|||+.+.|.||+|+|+++++..+|+|+++|++++.++++.|+||+.+++|.++.+.... ........+.++..++.+.|
T Consensus 1 RLp~~v~p~~Y~L~L~~~~~~~~f~G~v~I~~~~~~~~~~I~L~~~~l~I~~v~~~~~~~~~~~~~~~~~~~~~~~~l~I 80 (390)
T PF01433_consen 1 RLPDDVDPLHYDLDLTPDFEKRTFSGTVTITFEVTEPTNSIVLHAKDLSISSVSLNGNDSSSEYKSSPFEYDDENEKLTI 80 (390)
T ss_dssp S--TTEEEEEEEEEEEEETTTTEEEEEEEEEEEESSTECEEEEEESSEEEEEEEETTEECSCTECCEEEEEECCBTEEEE
T ss_pred CCCCCeEEEEEEEEEEEeCCCCEEEEEEEEEEEEecCCCEEEEEeeccEEEEEeecCccccccccccceeeccccceeeh
Confidence 89999999999999999999999999999999999999999999999999999987411 11112223678888899999
Q ss_pred EeccCccce-eEEEEEEEEeeecCCCcceEEeeeec--CCeeeeeeecccccCCCCeeeeecCCCCCeeEEEEEEEeCCC
Q 006262 94 VFDEPLAVG-EGILRIIFYGKLNEHTKGFYKCSYVE--KEVKKNMAVTQFEAVDARRCFPCWDEPALKATFKITLDIPSE 170 (653)
Q Consensus 94 ~l~~~l~~g-~~~l~i~y~g~~~~~~~G~y~~~y~~--~g~~~~~~~T~~ep~~Ar~~fPc~DeP~~ka~f~l~i~~p~~ 170 (653)
.+++++.+| .|+|+|.|+|.++++..|+|++.|.+ ++...++++||+||.+||+||||||+|.+||+|+++|++|++
T Consensus 81 ~l~~~l~~g~~~~L~I~y~g~~~~~~~G~~~~~y~~~~~~~~~~~~~t~~~p~~ar~~fPc~D~p~~ka~f~~~i~~p~~ 160 (390)
T PF01433_consen 81 TLPKPLPPGSNYTLRIEYSGKISDDSSGLYRSSYTDQTNGNTRWYIYTQFEPNGARRWFPCFDEPSFKATFDLTITHPKD 160 (390)
T ss_dssp EEEEECSTTEEEEEEEEEEEECBSSSSEEEEEEEE-GTSSSETCEEEEE-TTTTGGGTSSB--STTSEEEEEEEEEEETT
T ss_pred hhhhhcccCcEEEEEEEEeecccccccccccceeecccccccCCceeecccccccceeeeeeccCCccceEEEeeecccc
Confidence 999999999 79999999999999899999999986 678889999999999999999999999999999999999999
Q ss_pred CeEEecCccccee-ecCCEEEEEEEeCCcccceEEEEEEecceeeeecccCCeEEEEEecCCCcchhHHHHHHHHHHHHH
Q 006262 171 LTALSNMPILDEK-LNGNLKTVYFEESPVMSTYLVAFVVGLFDHIEDTTTNGVKVHVYCPVGKSSEGKHALDVAIKSLGI 249 (653)
Q Consensus 171 ~~~~sn~~~~~~~-~~~~~~~~~f~~t~~mstyl~a~~vg~f~~~~~~~~~g~~v~v~~~~~~~~~~~~~l~~~~~~l~~ 249 (653)
++|+|||++.+.. ..+++++++|..++|||+|++||+||+|..++..+.+|+++++|++|+..+.++++++.+.+++++
T Consensus 161 ~~~~sng~~~~~~~~~~~~~~~~f~~t~p~~~yl~a~~vg~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~ 240 (390)
T PF01433_consen 161 YTALSNGPLEEEESNDDGWKTTTFETTPPMPTYLFAFAVGDFESVEVTTKSGVPVRVYARPGDEEQLQFALDIAPKALEY 240 (390)
T ss_dssp TEEEESSEEEEEEEETTTEEEEEEEEEEEEEGGG--EEEESEEEEEEETTTEEEEEEEEECTCGGGHHHHHHHHHHHHHH
T ss_pred ceeeccccccccccccccceeEeeecccccCchhhhhhcCcccccccccccccchheeehhhhHHHHHHHHHhhHHHHHH
Confidence 9999999998874 446899999999999999999999999999886666679999999999999999999999999999
Q ss_pred HHHHhCCCCCCCCcceeecCCCCcccccccccceeecceeeecCCCCCHHHHHHHHHHHHHHHHHHHhcCccCccccchh
Q 006262 250 YTEFFSTPYPLPKLDMVAVSEFHAGAMENFGLIVYRENELLYNEKTSTANRKQIMAISTSHEVAHQWFGNLVTMEWWTHL 329 (653)
Q Consensus 250 ~e~~fg~~yp~~kld~V~~P~~~~game~~Gli~~~e~~ll~~~~~s~~~~~~~~~~~iaHElaHqWfGnlVt~~~w~d~ 329 (653)
|+++||+|||++|+|+|++|++..|||||||+|++++..++++++.++...+..+..+||||+|||||||+||++||+|+
T Consensus 241 ~~~~~g~~yp~~k~~~v~~p~~~~~~me~~g~i~~~~~~l~~~~~~~~~~~~~~~~~~iahElahqWfGn~vt~~~w~d~ 320 (390)
T PF01433_consen 241 YEEYFGIPYPFKKLDIVAVPDFPFGGMENWGLITYRESYLLYDPDISTIGDKQEIASLIAHELAHQWFGNLVTPKWWSDL 320 (390)
T ss_dssp HHHHHTS--SSSEEEEEEEST-SSSEE--TTEEEEEGGGTS-STTTS-HHHHHHHHHHHHHHHHTTTBTTTEEESSGGGH
T ss_pred HHhhccccceecceeEEEEeccccccccccccccccccccccCcccccchhhhhhHHHHHHHHHHHHhccCCccccchhh
Confidence 99999999999999999999999999999999999999999999988888889999999999999999999999999999
Q ss_pred HhhhhHHHHHHHHHHhhhCCchhhHHHHHHHhh-hhhccccccCCCCceeecCChhhhhhhcccccchhh
Q 006262 330 WLNEGFATWISYMATDIMFPEWKMWTQFLRQTS-HGLRLDAQEQSHPIEVEVHRADEIDQVFDAISYNKG 398 (653)
Q Consensus 330 WL~EGfA~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~p~~~~~~~~~~~~~~f~~i~Y~Kg 398 (653)
||+||||+|++++++++.+|++.++..+..+.+ .++..|....++|+...+.++.++...|+.++|.||
T Consensus 321 WL~Eg~a~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~~~~~~~~~~~~~f~~~~Y~KG 390 (390)
T PF01433_consen 321 WLNEGFATYLEYLILEKLFGEWQMMELFLVQEMQRALREDALPNSHPLSSEVEDPSDIDDMFDDISYNKG 390 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHGHHHHHHHHHHHHHHHHHHHHTSTTCCCSSSSSSSESCGGGGSSHHHHHHH
T ss_pred hHHHHHHHHHHHHhHhhccCcccchhhhhhhhHHHHHHHhhcCCCcceEeCCCCCCChHHhcCccccCCC
Confidence 999999999999999999999888888877766 779999999999999888899999999999999998
No 8
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=7.5e-56 Score=455.19 Aligned_cols=442 Identities=24% Similarity=0.349 Sum_probs=343.0
Q ss_pred CccccccccccCCCCCCCCceeeEEEEEEEEccCCceEEEEEEEEEEEecccCEEEEEecCceeEEEEEEecCCcccccc
Q 006262 1 MEQKLNRNQFKSQARLPKFAIPSYYDLYIKLDLVACTFSGNVNININIIEKTNFIVLNALELNVHEVLFTSSHNQEYRPS 80 (653)
Q Consensus 1 ~~~~~~~~~~~~~~rLp~~~~p~~Y~l~l~~d~~~~~f~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~~~~~~~~~~~~~ 80 (653)
|+..++++.++ + +..+...|++|++++|++...++|+|.+++++..+...|+|+..+|.|.+|.+++. ....+..
T Consensus 1 m~~~~Dp~s~s-n---~~~~~~~H~~l~~~vdF~~~~i~G~a~l~l~~~~~~~~~~LDt~~l~i~~v~i~~~-~~~~~i~ 75 (613)
T KOG1047|consen 1 MAPRRDPSSAS-N---YRDVTVLHLALNLRVDFEKRGISGSALLTLRLLEDNLKLVLDTRDLSIRNVTINGE-EPPFRIG 75 (613)
T ss_pred CCCCCCccccc-C---hhhhhhheeeeeEEEecccceecceEEEEEEeccCCceeEeeecceeeEEeeccCC-CCCCccC
Confidence 56666666664 3 44556899999999999999999999999998777667999999999999999842 1111221
Q ss_pred c-eeecCCCcEEEEEeccCccce-eEEEEEEEEeeecCCCcceE-EeeeecCCeeeeeeecccccCCCCeeeeecCCCCC
Q 006262 81 D-AIMDKDDEILVLVFDEPLAVG-EGILRIIFYGKLNEHTKGFY-KCSYVEKEVKKNMAVTQFEAVDARRCFPCWDEPAL 157 (653)
Q Consensus 81 ~-~~~~~~~~~l~i~l~~~l~~g-~~~l~i~y~g~~~~~~~G~y-~~~y~~~g~~~~~~~T~~ep~~Ar~~fPc~DeP~~ 157 (653)
. -.+...+..+++..+. .++| ..+|.|.|...- +..++- ...-...|....++.||++..+||..|||+|.|+.
T Consensus 76 ~~~~~~g~~~~~~l~~~~-~~a~~~~~l~i~y~Ts~--~atalqwL~peQT~gk~~PylfsQCQAIhaRsi~PC~DTPav 152 (613)
T KOG1047|consen 76 FRQPFLGSGQKLVLPAPS-SKAGERLQLLIWYETSP--SATALQWLNPEQTSGKKHPYLFSQCQAIHARSIFPCQDTPAV 152 (613)
T ss_pred cccCCCCCceEEEecccc-ccccCceEEEEEEeccC--CcceeEEeccccccCCCCCchHHHHHHhHHheeccccCCCcc
Confidence 1 1122222335554433 3455 889999999653 334552 22233457778899999999999999999999999
Q ss_pred eeEEEEEEEeCCCCeEEecCccccee-ecCCEEEEEEEeCCcccceEEEEEEecceeeeecccCCeEEEEEecCCCcchh
Q 006262 158 KATFKITLDIPSELTALSNMPILDEK-LNGNLKTVYFEESPVMSTYLVAFVVGLFDHIEDTTTNGVKVHVYCPVGKSSEG 236 (653)
Q Consensus 158 ka~f~l~i~~p~~~~~~sn~~~~~~~-~~~~~~~~~f~~t~~mstyl~a~~vg~f~~~~~~~~~g~~v~v~~~~~~~~~~ 236 (653)
|.||+..|.+|.++++++++....+. ...++..++|....|+|+|++||++|+....+ -|.+-+||+.|...+.+
T Consensus 153 K~ty~a~v~vp~~l~a~mSai~~~~~~~~~~~~~f~f~q~~pIP~YLiai~~G~L~s~e----IgpRs~VwaEp~~~~a~ 228 (613)
T KOG1047|consen 153 KSTYTAEVEVPMGLTALMSAIPAGEKPGSNGRAIFRFKQEVPIPSYLIAIAVGDLESRE----IGPRSRVWAEPCLLDAC 228 (613)
T ss_pred eeEEEEEEEcCCcceeeeeccccccCCCCCCcceEEEEeccCchhhhHHHhhccccccc----cCCccceecchhhhHHH
Confidence 99999999999999999988765443 34457889999999999999999999987554 36778999999998888
Q ss_pred HHHHH-HHHHHHHHHHHHhCCCCCCCCcceeecC-CCCcccccccccceeecceeeecCCCCCHHHHHHHHHHHHHHHHH
Q 006262 237 KHALD-VAIKSLGIYTEFFSTPYPLPKLDMVAVS-EFHAGAMENFGLIVYRENELLYNEKTSTANRKQIMAISTSHEVAH 314 (653)
Q Consensus 237 ~~~l~-~~~~~l~~~e~~fg~~yp~~kld~V~~P-~~~~game~~Gli~~~e~~ll~~~~~s~~~~~~~~~~~iaHElaH 314 (653)
++-+. .+.++|+.-|+.+| ||++.+||++++| .|++|||||+-|.+...+ ||-... + ...+|||||||
T Consensus 229 ~~ef~~~~e~~L~~Ae~l~G-pY~WgryDllvlPpSFP~gGMENPcltF~TpT-llaGDr-s-------l~~vIaHEIAH 298 (613)
T KOG1047|consen 229 QEEFAGETEDFLKAAEKLFG-PYVWGRYDLLVLPPSFPFGGMENPCLTFVTPT-LLAGDR-S-------LVDVIAHEIAH 298 (613)
T ss_pred HHHHHhhhHHHHHHHHHHcC-CcccccceEEEecCCCCcccccCcceeeecch-hhcCCc-c-------hhhHHHHHhhh
Confidence 77776 89999999999999 9999999999995 899999999977666665 555443 2 46899999999
Q ss_pred HHhcCccCccccchhHhhhhHHHHHHHHHHhhhCCchhhHHHHHHHhhh-hhccccccCCCCcee---ecCChhhhhhhc
Q 006262 315 QWFGNLVTMEWWTHLWLNEGFATWISYMATDIMFPEWKMWTQFLRQTSH-GLRLDAQEQSHPIEV---EVHRADEIDQVF 390 (653)
Q Consensus 315 qWfGnlVt~~~w~d~WL~EGfA~y~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~D~~~~~~p~~~---~~~~~~~~~~~f 390 (653)
-||||+||...|.+.||||||++|++..++..++|+............. .-..|.+...++... ...+ .+.+..|
T Consensus 299 SWtGNlVTN~sWehfWLNEGfTvylErrI~g~~~g~~~~~f~a~~gw~~L~~~~d~~g~~~~~tkLv~kl~~-~dPDdaf 377 (613)
T KOG1047|consen 299 SWTGNLVTNASWEHFWLNEGFTVYLERRIVGRLYGEAYRQFEALIGWRELRPSMDLFGETSEFTKLVVKLEN-VDPDDAF 377 (613)
T ss_pred hhcccccccCccchhhhcccchhhhhhhhhhhhcchhHHHHHHhcChhhhhhHHHhcCCCcccchhhhhccC-CChHHhh
Confidence 9999999999999999999999999999999999974321111111110 012345555555432 2222 3457889
Q ss_pred ccccchhhhHHHHHHHHhhC-HHHHHHHHHHHHHhcccCCCChHHHHHHHHhhcC----CCH--HHHHHHHhcCCCcceE
Q 006262 391 DAISYNKGSAVIRMLQSYLG-EDIFQKSLSLYMKKYAWKNVETEDLWSVLSEESG----INI--TSLMECWTKQKGHPVV 463 (653)
Q Consensus 391 ~~i~Y~Kg~~vl~mL~~~lG-~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~sg----~~l--~~~~~~W~~~~G~P~l 463 (653)
..+.|.||..+|+.|++.+| ++.|...||.|+++|+++++.++||.+.|-+... +++ .--++.|++.+|.|-.
T Consensus 378 s~VpYeKG~~ll~~Le~~lG~~~~Fd~FLr~Yv~kfa~ksI~t~dfld~Lye~fpe~kk~dil~~vd~~~Wl~~~G~Pp~ 457 (613)
T KOG1047|consen 378 SQVPYEKGFALLFYLEQLLGDPTRFDPFLRAYVHKFAFKSILTQDFLDFLYEYFPELKKKDILDEVDWDLWLNSPGMPPP 457 (613)
T ss_pred hcCchhhhhHHHHHHHHHhCChhhHHHHHHHHHHHhccceecHHHHHHHHHHhCcchhhhhhhccccHHHHhcCCCCCCC
Confidence 99999999999999999999 6779999999999999999999999999877543 222 2247999999999965
Q ss_pred EE
Q 006262 464 YV 465 (653)
Q Consensus 464 ~v 465 (653)
.-
T Consensus 458 ~p 459 (613)
T KOG1047|consen 458 KP 459 (613)
T ss_pred CC
Confidence 43
No 9
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=100.00 E-value=3.2e-37 Score=339.14 Aligned_cols=424 Identities=18% Similarity=0.283 Sum_probs=318.0
Q ss_pred eeEEEEEEE-EccCCceEEEEEEEEEEE-ecccCEEEEEecCceeEEEEEEecC--Cc----------------ccc---
Q 006262 22 PSYYDLYIK-LDLVACTFSGNVNININI-IEKTNFIVLNALELNVHEVLFTSSH--NQ----------------EYR--- 78 (653)
Q Consensus 22 p~~Y~l~l~-~d~~~~~f~G~v~I~~~~-~~~~~~i~L~~~~l~i~~v~~~~~~--~~----------------~~~--- 78 (653)
..|..+.|. +|+....+.|.++|++.. ..+...|.||++++.|.+|.++++. +. .+.
T Consensus 27 ~~hQkv~l~~Idf~~rsi~G~tEitI~P~~~nL~~i~l~~kql~I~sV~V~~~~~~f~y~d~~q~~~~~~~~~~~l~~~s 106 (1180)
T KOG1932|consen 27 VLHQKVSLSNIDFSKRSIIGFTEITIQPLVPNLSVIVLHSKQLRILSVLVNGSPTKFIYNDPTQNDCTDEIWQRVLDPAS 106 (1180)
T ss_pred ceEEEEEeecccceeeEEEeEEEEEEecCCCCcceEEEeccccEEEEEEecCcccceeecchhhhhhhhhhhhhhhhhhh
Confidence 689999998 999999999999999986 4668999999999999999998520 00 000
Q ss_pred ------ccceeecCCCcEEEEEeccCccc-e----eEEEEEEEEeeecCCCcceEEeeeecCCeeeeeeecccc-cCCCC
Q 006262 79 ------PSDAIMDKDDEILVLVFDEPLAV-G----EGILRIIFYGKLNEHTKGFYKCSYVEKEVKKNMAVTQFE-AVDAR 146 (653)
Q Consensus 79 ------~~~~~~~~~~~~l~i~l~~~l~~-g----~~~l~i~y~g~~~~~~~G~y~~~y~~~g~~~~~~~T~~e-p~~Ar 146 (653)
..-...+.+++.|.|.++++++. | ..+|+|.|+..-+..+--|++..|........+..+..+ +.+||
T Consensus 107 ~~~~~~~~y~~l~~~~g~L~I~ipk~~~~~~ee~~~lr~~I~~s~~~pk~gi~Fv~~~~~~~~~~~hvft~~~~~~s~ar 186 (1180)
T KOG1932|consen 107 QSHFLAVQYEDLDEDNGELLIKIPKESKKVGEELKALRLRIDFSVREPKDGIKFVRPNYIVSPRDKHVFTNNTQISSSAR 186 (1180)
T ss_pred hhhhHHHhhhccccCCCeEEEEcCchhhhhhhhccceEEEEEEEccCCCCCeEEeccCcccCcccCceEeecCccccccc
Confidence 00112234568999999988543 3 356778898655555555666655333333444455554 45799
Q ss_pred eeeeecCCCCCeeEEEEEEEeCCCCeEEecCcccceee--cCCEEEEEEEeCCcccceEEEEEEecceeeeecccCCeEE
Q 006262 147 RCFPCWDEPALKATFKITLDIPSELTALSNMPILDEKL--NGNLKTVYFEESPVMSTYLVAFVVGLFDHIEDTTTNGVKV 224 (653)
Q Consensus 147 ~~fPc~DeP~~ka~f~l~i~~p~~~~~~sn~~~~~~~~--~~~~~~~~f~~t~~mstyl~a~~vg~f~~~~~~~~~g~~v 224 (653)
.||||.|.+..+|+|++++++|+.++++|+|.+.++.. +-+.++++|.-+.|+++..+||+||+|+... ...++++
T Consensus 187 ~WfPCvD~~~e~~tWeLeftvp~~~~av~~geLl~~v~~~D~~Kkt~~ys~tvPvA~~~I~~AiG~F~~~~--~P~~~~i 264 (1180)
T KOG1932|consen 187 SWFPCVDSSYERCTWELEFTVPKNLVAVSCGELLEQVETPDLRKKTYHYSLTVPVAPSNIGFAIGPFKSYV--EPSMIDI 264 (1180)
T ss_pred eEEeecCCccccceEEEEEEecccceeccchhhhheeecccccccEEEEEEeccCCccccceeeccccccC--CCccCcc
Confidence 99999999999999999999999999999999988733 3347889999999999999999999999773 2347899
Q ss_pred EEEecCCCcchhHHHHHHHHHHHHHHHHHhCCCCCCCCcceeecCCCCcccccccccceeecceeeecCCCCCHHHHHHH
Q 006262 225 HVYCPVGKSSEGKHALDVAIKSLGIYTEFFSTPYPLPKLDMVAVSEFHAGAMENFGLIVYRENELLYNEKTSTANRKQIM 304 (653)
Q Consensus 225 ~v~~~~~~~~~~~~~l~~~~~~l~~~e~~fg~~yp~~kld~V~~P~~~~game~~Gli~~~e~~ll~~~~~s~~~~~~~~ 304 (653)
..||.|+.........-...++++|||+++|..|||+.+.+|++|....--|....|.++..+ +||..+.. +.....
T Consensus 265 ~~f~LP~~~~~v~nt~~~l~k~iefye~~ls~rYPF~~~k~VFvd~~~~~i~~~asl~I~st~-lLy~~~iI--Dq~~~t 341 (1180)
T KOG1932|consen 265 THFCLPGLEPLVKNTTVYLHKAIEFYEEELSSRYPFSCYKTVFVDEAAVEISSYASLSIFSTS-LLYSKNII--DQTFLT 341 (1180)
T ss_pred eeEecCcchHHhhhHHHHHHHHHHHHHHHhccCCCcceeeEEEecCCcceeeecceeeeeecc-ccchHhhh--hHHHHH
Confidence 999999999988888899999999999999988999999999999877767777788888877 89987643 344456
Q ss_pred HHHHHHHHHHHHhcCccCccccchhHhhhhHHHHHHHHHHhhhCCchhhHHHHHHHhhhhhcccc----ccCCCCceeec
Q 006262 305 AISTSHEVAHQWFGNLVTMEWWTHLWLNEGFATWISYMATDIMFPEWKMWTQFLRQTSHGLRLDA----QEQSHPIEVEV 380 (653)
Q Consensus 305 ~~~iaHElaHqWfGnlVt~~~w~d~WL~EGfA~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~----~~~~~p~~~~~ 380 (653)
...+|-.||.||||-++++..|+|.||.+|+|.|+..+++++..|+.++..+.-.+.-..+..|- ...+.|+....
T Consensus 342 r~~La~aLA~Q~fg~yIsp~~wsD~Wl~~GiagYl~~l~~kk~lGNNEyry~lKk~~d~V~~~d~~~g~i~l~~Pi~~s~ 421 (1180)
T KOG1932|consen 342 RRKLAWALASQWFGVYISPVDWSDFWLLKGIAGYLTGLFVKKFLGNNEYRYQLKKALDAVVDYDVQKGAIYLTRPISPSM 421 (1180)
T ss_pred HHHHHHHHHHhhhEEEeeccchhhhHHHHhHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHhhhccCceeeccCCCcch
Confidence 78899999999999999999999999999999999999999999987765544333323333332 11222333221
Q ss_pred C--------------ChhhhhhhcccccchhhhHHHHHHHHhhCHHHHHHHHHHHHHhcccCCCChHHHHHHHHhhcCCC
Q 006262 381 H--------------RADEIDQVFDAISYNKGSAVIRMLQSYLGEDIFQKSLSLYMKKYAWKNVETEDLWSVLSEESGIN 446 (653)
Q Consensus 381 ~--------------~~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~sg~~ 446 (653)
. .....+..|..-.-.|+..+.+|+++.+|.+-|.+.++..+. .++...
T Consensus 422 k~~~~~~~~lh~~~r~~~~~s~~~~~a~~~k~~~~~~m~~~~i~~e~~~q~f~kv~~-----------------~~~~~~ 484 (1180)
T KOG1932|consen 422 KFKLKGPFHLHISIRHLHTLSGSYGMAFVIKKLLLQRMSGNRINEELSFQVFNKVLE-----------------LASKML 484 (1180)
T ss_pred hhcccCcceeeecccceeecChhHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHH-----------------hhhhhH
Confidence 1 011111112112235888888999999998877666555443 222223
Q ss_pred HHHHHHHHhcCCCcceEEEEE
Q 006262 447 ITSLMECWTKQKGHPVVYVNC 467 (653)
Q Consensus 447 l~~~~~~W~~~~G~P~l~v~~ 467 (653)
++.|++.|++..|+|.+.+..
T Consensus 485 ~k~~~~~Wv~~~g~~~~r~~~ 505 (1180)
T KOG1932|consen 485 LKSFFQTWVYGLGVPILRLGQ 505 (1180)
T ss_pred HHHHHHHHHhccCCeeEEEEE
Confidence 577888888888888887764
No 10
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=99.76 E-value=1.3e-18 Score=182.80 Aligned_cols=112 Identities=30% Similarity=0.423 Sum_probs=97.5
Q ss_pred eEEeccCceeEEEEEcCHHHHHHHHHHHHcCCCChhcHHHHHHHHHHHHHcCCCCHHHHHHHHHhh-hcCCCHHHHHHHH
Q 006262 540 WIKVNVEQSGFYRVIYDDELSARLRKAVENNCLSAADKLGILDDMLALCQACKQPLSYLLLLLDAH-RKEHDSMVLSKLI 618 (653)
Q Consensus 540 wi~~N~~~~gyyrV~Yd~~~w~~l~~~l~~~~i~~~~ra~li~D~~~l~~~g~l~~~~~l~l~~~l-~~E~~~~~w~~~~ 618 (653)
||++|.++.|||||+||+++|+.|+++|..+.|++.+|++||+|+|+++++|+++++.+|+++.|+ ++|++|.||..++
T Consensus 1 wi~~N~~~~GyyRV~Yd~~~~~~l~~~L~~~~l~~~~R~~ll~D~~al~~~g~~~~~~~l~l~~~~~~~E~~~~vw~~~~ 80 (324)
T PF11838_consen 1 WIKLNAGQTGYYRVNYDEENWDALIKQLQSNHLSPLDRAQLLDDLFALARAGRLSYSDFLDLLEYLLPNETDYVVWSTAL 80 (324)
T ss_dssp EEEESGGGSSSSEEEECTTHHHHHHHHHHHHGS-HHHHHHHHHHHHHHHHTTSS-HHHHHHHHGGG-GT--SHHHHHHHH
T ss_pred CEEEeCCceEEEEEeCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCCchHHHHHHH
Confidence 999999999999999999999999999987669999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHhccChhhHHHHHHHHHHhccccc
Q 006262 619 NVCYDVVEIITDAMPDAVNELKDFSSVSSNLLL 651 (653)
Q Consensus 619 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (653)
..|..+.+.+...++.....|++|+..++.++.
T Consensus 81 ~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~ 113 (324)
T PF11838_consen 81 SNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLY 113 (324)
T ss_dssp HHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 999999988773324333459999998887765
No 11
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=99.24 E-value=3.6e-10 Score=118.32 Aligned_cols=250 Identities=14% Similarity=0.173 Sum_probs=159.6
Q ss_pred CeEEEEEecCCCcchhHHHHHHHHHHHHHHHHHhCCCCCCCCcceeec-CCCCcccccccccceeecceeeecCCCCCHH
Q 006262 221 GVKVHVYCPVGKSSEGKHALDVAIKSLGIYTEFFSTPYPLPKLDMVAV-SEFHAGAMENFGLIVYRENELLYNEKTSTAN 299 (653)
Q Consensus 221 g~~v~v~~~~~~~~~~~~~l~~~~~~l~~~e~~fg~~yp~~kld~V~~-P~~~~game~~Gli~~~e~~ll~~~~~s~~~ 299 (653)
+..+.++..-. ..+.+...+.++++++.-.+.|| +-|+.++.+++- -+-.+||||+-.-.........+. +..
T Consensus 169 ph~~~~~g~~p-~~d~~~~~~~~k~ii~~~~~vFg-~~~~~~Y~Fl~~~s~q~~GGlEH~~St~l~~~r~~~~----~~~ 242 (558)
T COG3975 169 PHTIALRGELP-NFDKERLASDTKKIIEAEIKVFG-SAPFDKYVFLLHLSDQIYGGLEHRRSTALIYDRFGFT----DQD 242 (558)
T ss_pred ceeEEEeeccc-cccHHHHHHHHHHHHHHHHHHhc-CCCccceEEEEEecCCCCCCceecccccccccccccc----chh
Confidence 34444444321 23567777888999999999999 789999887765 455678999854333333322221 122
Q ss_pred HHHHHHHHHHHHHHHHHhcCccCccc-----------cchhHhhhhHHHHHHHHHHhhhCCchhhHHHHHHHh---hhhh
Q 006262 300 RKQIMAISTSHEVAHQWFGNLVTMEW-----------WTHLWLNEGFATWISYMATDIMFPEWKMWTQFLRQT---SHGL 365 (653)
Q Consensus 300 ~~~~~~~~iaHElaHqWfGnlVt~~~-----------w~d~WL~EGfA~y~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 365 (653)
..+....+++||..|-|-+-.+.+.- -.-+|+.|||++|+..+..-.. +- --.++|+... ..++
T Consensus 243 ky~~~l~llsHEyfH~WNvKrIrpa~l~p~~~d~en~t~~lW~~EG~T~Yy~~ll~lRs-gl-~~~~~~l~~la~tl~~~ 320 (558)
T COG3975 243 KYQDLLGLLSHEYFHAWNVKRIRPAALEPFNLDKENYTPLLWFSEGFTSYYDRLLALRS-GL-ISLETYLNYLAKTLARY 320 (558)
T ss_pred HHHHHHHHHHHHHHHhccceeccccccCCccccccCCCcceeeecCchHHHHHHHHHHh-cc-CcHHHHHHHHHHHHHHH
Confidence 23566889999999999987666532 2569999999999997654322 11 1112333322 2222
Q ss_pred ccccccCCCCceeecCC-------hhhhhhhcccccchhhhHHHHHHHHhh-----CHHHHHHHHHHHHHhccc--CCCC
Q 006262 366 RLDAQEQSHPIEVEVHR-------ADEIDQVFDAISYNKGSAVIRMLQSYL-----GEDIFQKSLSLYMKKYAW--KNVE 431 (653)
Q Consensus 366 ~~D~~~~~~p~~~~~~~-------~~~~~~~f~~i~Y~Kg~~vl~mL~~~l-----G~~~F~~~l~~yl~~~~~--~~~~ 431 (653)
..-...-.+|+.....+ +++....--.-.|.||++|--+|...| |...+...|+.+.+.+.. +..+
T Consensus 321 ~~~~gRl~~~laEsS~~awik~yr~d~ns~n~~~sYY~kG~lv~L~lDl~iR~r~~~~~SLDdvmram~~~~~~~~~~~t 400 (558)
T COG3975 321 LNTPGRLRQSLAESSFDAWIKYYRPDENSPNRLVSYYQKGALVALLLDLLIRERGGGQKSLDDVMRALWKEFGRAERGYT 400 (558)
T ss_pred hcCCceecccccccccchhHHhhcccccccccchhhhhchhHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCcCccCCC
Confidence 22222222333221111 111111111124999999999998888 466799999999988776 6679
Q ss_pred hHHHHHHHHhhcCCCHHHHHHHHhcCCCcceEEEEEeCCEEEEEEEe
Q 006262 432 TEDLWSVLSEESGINITSLMECWTKQKGHPVVYVNCKDNLLEFKQSQ 478 (653)
Q Consensus 432 ~~df~~~l~~~sg~~l~~~~~~W~~~~G~P~l~v~~~~~~i~l~Q~r 478 (653)
++|+..++++++|.++..||+..+.+..-|.+.---....+++++++
T Consensus 401 ~e~v~av~~~~tg~dl~~f~~~~i~~~~~~~l~~~l~~~gL~~~~~~ 447 (558)
T COG3975 401 PEDVQAVLENVTGLDLATFFDEYIEGTEPPPLNPLLERFGLTFTPKP 447 (558)
T ss_pred HHHHHHHHHhhccccHHHHHHHHhhcCCCCChhhhhhhcceEEEecC
Confidence 99999999999999999999999998886665433223456666654
No 12
>PF13485 Peptidase_MA_2: Peptidase MA superfamily
Probab=99.22 E-value=1.7e-11 Score=109.87 Aligned_cols=106 Identities=24% Similarity=0.409 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHhcCccCccccchhHhhhhHHHHHHHHHHhhhCCchhhHHHHHHHhhhhhccccccCCCCceeecC
Q 006262 302 QIMAISTSHEVAHQWFGNLVTMEWWTHLWLNEGFATWISYMATDIMFPEWKMWTQFLRQTSHGLRLDAQEQSHPIEVEVH 381 (653)
Q Consensus 302 ~~~~~~iaHElaHqWfGnlVt~~~w~d~WL~EGfA~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~p~~~~~~ 381 (653)
.....+++||++|+|+++.+........|++||+|+|++... .. .+......++..+......++.....
T Consensus 23 ~~~~~~l~HE~~H~~~~~~~~~~~~~~~W~~EG~A~y~~~~~----~~------~~~~~~~~~~~~~~~~~~~~l~~~~~ 92 (128)
T PF13485_consen 23 DWLDRVLAHELAHQWFGNYFGGDDNAPRWFNEGLAEYVEGRI----ED------EFDEDLKQAIESGSLPPLEPLNSSFD 92 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCccCchHHHHHHHHHHhcCc----cc------hhHHHHHHHHHcCCCCChHHHhcccc
Confidence 345689999999999999998777788999999999999331 01 11111222222222222222221111
Q ss_pred ChhhhhhhcccccchhhhHHHHHHHHhhCHHHHHHHHHHH
Q 006262 382 RADEIDQVFDAISYNKGSAVIRMLQSYLGEDIFQKSLSLY 421 (653)
Q Consensus 382 ~~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~~~F~~~l~~y 421 (653)
. ...+....|.+|.+++++|+...|++.|++.|+.|
T Consensus 93 ~----~~~~~~~~Y~~~~~~~~~L~~~~G~~~~~~~l~~~ 128 (128)
T PF13485_consen 93 F----SWEDDSLAYYQGYLFVRFLEEKYGREKFKAFLREY 128 (128)
T ss_pred c----cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 1 34455679999999999999999999999999875
No 13
>PF10460 Peptidase_M30: Peptidase M30; InterPro: IPR019501 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family contains metallopeptidases belonging to MEROPS peptidase family M30 (hyicolysin family, clan MA). Hyicolysin has a zinc ion which is liganded by two histidine and one glutamate residue.
Probab=97.81 E-value=0.00064 Score=70.55 Aligned_cols=142 Identities=14% Similarity=0.152 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHHH--hcCccCcc--ccchhHhhhhHHHHHHHHHHhhhCCchhh-HHHHHHHhhhhhccc-cccCCC
Q 006262 301 KQIMAISTSHEVAHQW--FGNLVTME--WWTHLWLNEGFATWISYMATDIMFPEWKM-WTQFLRQTSHGLRLD-AQEQSH 374 (653)
Q Consensus 301 ~~~~~~~iaHElaHqW--fGnlVt~~--~w~d~WL~EGfA~y~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~D-~~~~~~ 374 (653)
...+..++|||+-|+= --+.|... .-.|.|||||+|.-+|.++..+..+..+. ....... +..+ .....+
T Consensus 136 ~~~~~sTlAHEfQHmInfy~~~v~~g~~~~~dtWLnE~lS~~aEdl~s~~~~~~~n~i~d~R~~~----y~~~~~~~~~~ 211 (366)
T PF10460_consen 136 PDTVYSTLAHEFQHMINFYQRGVLHGKQYAMDTWLNEMLSMSAEDLYSSKIDPGYNNIRDSRIPY----YNNYTSGNYNC 211 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHhcCCCcccCccccccHHH----HhhccccCCCc
Confidence 3457889999999974 22344443 23699999999999999887766432111 0000111 1111 011111
Q ss_pred CceeecCChhhhhhhcccccchhhhHHHHHHHHhhCHHHHHHHHHHHHHhcccCCCChHHHHHHHHh-h-cCCCHHHHHH
Q 006262 375 PIEVEVHRADEIDQVFDAISYNKGSAVIRMLQSYLGEDIFQKSLSLYMKKYAWKNVETEDLWSVLSE-E-SGINITSLME 452 (653)
Q Consensus 375 p~~~~~~~~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~-~-sg~~l~~~~~ 452 (653)
.+..- ... .-....|....+++.-|....|.+.+++.|.. ....+..+..++..+ + .+..+.++|.
T Consensus 212 ~l~~w-~~~-----g~~l~sYs~s~~Fg~~L~rQ~G~~~~~~~l~~------~~~tds~avl~aa~~~~~~~~sf~~~l~ 279 (366)
T PF10460_consen 212 SLTAW-SSF-----GDSLASYSSSYSFGAYLYRQYGGDFYKKLLTN------SSSTDSEAVLDAAIKQAGPGNSFGELLR 279 (366)
T ss_pred ceeec-CCC-----ccccccchhHHHHHHHHHHHcChHHHHHHHhc------CCCCcHHHHHHHHHHhhcCCCCHHHHHH
Confidence 12111 111 11235799999999999888899887776652 134566776666543 4 3678999999
Q ss_pred HHhcCC
Q 006262 453 CWTKQK 458 (653)
Q Consensus 453 ~W~~~~ 458 (653)
+|...-
T Consensus 280 ~w~~A~ 285 (366)
T PF10460_consen 280 RWGVAL 285 (366)
T ss_pred HHHHHH
Confidence 997655
No 14
>PF05299 Peptidase_M61: M61 glycyl aminopeptidase; InterPro: IPR007963 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M61 (glycyl aminopeptidase family, clan MA(E)).The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The type example is glycyl aminopeptidase from Sphingomonas capsulata.
Probab=97.08 E-value=0.00033 Score=61.20 Aligned_cols=43 Identities=23% Similarity=0.378 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHhcCccC-----------ccccchhHhhhhHHHHHHHHHHhh
Q 006262 304 MAISTSHEVAHQWFGNLVT-----------MEWWTHLWLNEGFATWISYMATDI 346 (653)
Q Consensus 304 ~~~~iaHElaHqWfGnlVt-----------~~~w~d~WL~EGfA~y~~~~~~~~ 346 (653)
...++|||..|.|-+-.+. +.--+.+|+-|||++|++.+.+.+
T Consensus 4 ~l~l~sHEffH~WnvkrirP~~l~p~dy~~~~~t~~LWv~EG~T~Y~~~l~l~R 57 (122)
T PF05299_consen 4 FLGLLSHEFFHSWNVKRIRPAELGPFDYEKPNYTELLWVYEGFTSYYGDLLLVR 57 (122)
T ss_pred hhhhhhhhccccccceEeccccccCCCCCCCCCCCCEeeeeCcHHHHHHHHHHH
Confidence 4578999999999974444 445567899999999999887654
No 15
>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [].
Probab=96.73 E-value=0.034 Score=53.63 Aligned_cols=171 Identities=16% Similarity=0.195 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHHhCCC-CCCCCcceeec--CCCCccccccc----ccceeecceeeecCCCCCHHHHHHHHHHHHHH
Q 006262 239 ALDVAIKSLGIYTEFFSTP-YPLPKLDMVAV--SEFHAGAMENF----GLIVYRENELLYNEKTSTANRKQIMAISTSHE 311 (653)
Q Consensus 239 ~l~~~~~~l~~~e~~fg~~-yp~~kld~V~~--P~~~~game~~----Gli~~~e~~ll~~~~~s~~~~~~~~~~~iaHE 311 (653)
+..++.+++.+..+.|-.+ .+-+..+.|.+ .++..-|--.- .-|.++.+.+ -... .....+..+..+|.||
T Consensus 26 a~~~L~~a~~~V~~~ly~~~~~~~~v~~Vt~~~~~~~gVA~t~gd~~~~~I~~S~~~i-~~~~-~~~~~~~Ei~Gvl~HE 103 (205)
T PF04450_consen 26 AEQVLRDASRFVWRLLYQSPADRKPVRSVTLILDDMDGVAYTSGDDDHKEIHFSARYI-AKYP-ADGDVRDEIIGVLYHE 103 (205)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCcccEEEEEEECCCeeEEEecCCCccEEEEeHHHH-hhcc-cccchHHHHHHHHHHH
Confidence 4445556666666666432 22333444433 33321111111 3455554422 2211 1123446788999999
Q ss_pred HHHHHhcCccCccccchhHhhhhHHHHHHHHHHhhhCCchhhHHHHHHHhhhhhccccccCCCCceeecCChhhhhhhcc
Q 006262 312 VAHQWFGNLVTMEWWTHLWLNEGFATWISYMATDIMFPEWKMWTQFLRQTSHGLRLDAQEQSHPIEVEVHRADEIDQVFD 391 (653)
Q Consensus 312 laHqWfGnlVt~~~w~d~WL~EGfA~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~p~~~~~~~~~~~~~~f~ 391 (653)
++|-|=.+.-... --||-||+|.|+-..+- ..|. ....|... ..++
T Consensus 104 ~~H~~Q~~~~~~~---P~~liEGIADyVRl~aG--~~~~--------------------~w~~p~~~---------~~wd 149 (205)
T PF04450_consen 104 MVHCWQWDGRGTA---PGGLIEGIADYVRLKAG--YAPP--------------------HWKRPGGG---------DSWD 149 (205)
T ss_pred HHHHhhcCCCCCC---ChhheecHHHHHHHHcC--CCCc--------------------cccCCCCC---------CCcc
Confidence 9997765543322 23899999999976621 1110 01111110 1233
Q ss_pred cccchhhhHHHHHHHH-hhCHHHHHHHHHHHHHhcccCCCChHHHHHHHHhhcCCCHHHHHHH
Q 006262 392 AISYNKGSAVIRMLQS-YLGEDIFQKSLSLYMKKYAWKNVETEDLWSVLSEESGINITSLMEC 453 (653)
Q Consensus 392 ~i~Y~Kg~~vl~mL~~-~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~sg~~l~~~~~~ 453 (653)
-.|.-.|.+|.-|+. ..|+. |.+-|..=+++..+ +.+++|. +.+|+++.++.+.
T Consensus 150 -~gY~~TA~FL~wle~~~~~~g-fV~~LN~~m~~~~y---~~~~~~~---~l~G~~v~~LW~e 204 (205)
T PF04450_consen 150 -DGYRTTARFLDWLEDNRYGKG-FVRRLNEAMRRDKY---SSDDFWK---ELLGKPVDELWAE 204 (205)
T ss_pred -cccHHHHHHHHHHHhcccCcc-HHHHHHHHHhhCCC---CcHhHHH---HHHCcCHHHHHhh
Confidence 378899999999998 66643 66666666666565 4455554 4468888887654
No 16
>PF07607 DUF1570: Protein of unknown function (DUF1570); InterPro: IPR011464 This entry represents hypothetical proteins confined to bacteria.
Probab=95.91 E-value=0.0047 Score=54.56 Aligned_cols=40 Identities=25% Similarity=0.213 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhcCcc--CccccchhHhhhhHHHHHHHHHH
Q 006262 305 AISTSHEVAHQWFGNLV--TMEWWTHLWLNEGFATWISYMAT 344 (653)
Q Consensus 305 ~~~iaHElaHqWfGnlV--t~~~w~d~WL~EGfA~y~~~~~~ 344 (653)
+.+++||.+||=.-|.= ..-.-.=.|+.||||+|+|....
T Consensus 2 ~~T~~HEa~HQl~~N~Gl~~r~~~~P~Wv~EGlA~yFE~~~~ 43 (128)
T PF07607_consen 2 IATIAHEATHQLAFNTGLHPRLADWPRWVSEGLATYFETPGM 43 (128)
T ss_pred chHHHHHHHHHHHHHccccccCCCCchHHHHhHHHHcCCCcc
Confidence 35899999999987742 21111128999999999996644
No 17
>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function.
Probab=93.38 E-value=0.32 Score=46.83 Aligned_cols=100 Identities=12% Similarity=0.077 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhCCCCCCCCcceeecCCCCcc-----cccccccceeecceeee-cCCCCCHHHHHHHHHHHHHHHHHH
Q 006262 242 VAIKSLGIYTEFFSTPYPLPKLDMVAVSEFHAG-----AMENFGLIVYRENELLY-NEKTSTANRKQIMAISTSHEVAHQ 315 (653)
Q Consensus 242 ~~~~~l~~~e~~fg~~yp~~kld~V~~P~~~~g-----ame~~Gli~~~e~~ll~-~~~~s~~~~~~~~~~~iaHElaHq 315 (653)
.+.+.+....+.+ |.+.+++.++|.-+.+ .+...|-..+....+++ -+... ....+..++|||+.|.
T Consensus 4 ~i~~~~~~~~~~~----~~~~i~v~i~p~~~~~~~~~~~~g~~g~~~~~~~i~l~~~~~~~---~~~~l~~~iaHE~hH~ 76 (195)
T PF10026_consen 4 IIEEALEKSIELL----PGPDIPVFIFPADPENPFLIPELGGKGGGAIPGYIFLFLLPNDY---SLEELPALIAHEYHHN 76 (195)
T ss_pred HHHHHHHHHHHHc----CCCCCCEEEEeccCCCcccccccCcccccCCCCEEEEEecCCcc---cHHHHHHHHHHHHHHH
Confidence 3445555555554 4558888766532222 12223444444443444 23222 3446889999999998
Q ss_pred HhcCccC----ccccchhHhhhhHHHHHHHHHHhhhC
Q 006262 316 WFGNLVT----MEWWTHLWLNEGFATWISYMATDIMF 348 (653)
Q Consensus 316 WfGnlVt----~~~w~d~WL~EGfA~y~~~~~~~~~~ 348 (653)
+--..+. -..--|.-+.||+|.+++.....+..
T Consensus 77 ~r~~~~~~~~~~~TLld~~I~EGlAe~f~~~~~g~~~ 113 (195)
T PF10026_consen 77 CRYEQIGWDPEDTTLLDSLIMEGLAEYFAEELYGEEY 113 (195)
T ss_pred HHHhccCCCCCCCCHHHHHHHhhHHHHHHHHHcCCCC
Confidence 6433332 11223667899999999977654443
No 18
>COG4324 Predicted aminopeptidase [General function prediction only]
Probab=88.98 E-value=0.39 Score=46.86 Aligned_cols=40 Identities=28% Similarity=0.191 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHhcCccCccccchhHhhhhHHHHHHHHHHhhh
Q 006262 302 QIMAISTSHEVAHQWFGNLVTMEWWTHLWLNEGFATWISYMATDIM 347 (653)
Q Consensus 302 ~~~~~~iaHElaHqWfGnlVt~~~w~d~WL~EGfA~y~~~~~~~~~ 347 (653)
..++.+|-||+|||=|.- . +|.=+||+||++.+...+++.
T Consensus 195 ~~lA~LIFHELAHQk~Y~--~----~DtAFNEsFAtaVEt~Gvr~W 234 (376)
T COG4324 195 TYLASLIFHELAHQKIYV--N----NDTAFNESFATAVETSGVRKW 234 (376)
T ss_pred HHHHHHHHHHHhhheEee--c----CcchHhHHHHHHHHHHhHHHH
Confidence 457899999999996532 1 466789999999998877654
No 19
>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines.
Probab=86.56 E-value=4.6 Score=39.02 Aligned_cols=94 Identities=19% Similarity=0.338 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCcceeecCCCCcccccccccceeecceeeecCCCCCHHHHHHHHHHHHHHHHHHH
Q 006262 237 KHALDVAIKSLGIYTEFFSTPYPLPKLDMVAVSEFHAGAMENFGLIVYRENELLYNEKTSTANRKQIMAISTSHEVAHQW 316 (653)
Q Consensus 237 ~~~l~~~~~~l~~~e~~fg~~yp~~kld~V~~P~~~~game~~Gli~~~e~~ll~~~~~s~~~~~~~~~~~iaHElaHqW 316 (653)
+.+.+.....+..+++.+|.++ +++.+=-.-. ..|....-|.|++.-. |+.-|. .-+..+|+|||||--
T Consensus 108 ~~~~~~l~~~~~~~~~~~~~~~--~~i~ir~~ks-rWGsc~~~~~I~ln~~-L~~~P~-------~~idYVvvHEL~Hl~ 176 (205)
T PF01863_consen 108 KQAKEYLPERLKKYAKKLGLPP--PKIKIRDMKS-RWGSCSSKGNITLNWR-LVMAPP-------EVIDYVVVHELCHLR 176 (205)
T ss_pred HHHHHHHHHHHHHHHHHcCCCc--ceEEEeehhh-ccccCCCCCcEEeecc-cccCCc-------cHHHHHHHHHHHHhc
Confidence 3445566677778888888643 3333322222 2454555667777766 333332 247889999999987
Q ss_pred hcCccCccccchhHhhhhHHHHHHHHHHhhhCCchhhHHHH
Q 006262 317 FGNLVTMEWWTHLWLNEGFATWISYMATDIMFPEWKMWTQF 357 (653)
Q Consensus 317 fGnlVt~~~w~d~WL~EGfA~y~~~~~~~~~~~~~~~~~~~ 357 (653)
.-| --..+| ..+++..|+|......
T Consensus 177 ~~n-----Hs~~Fw-----------~~v~~~~Pd~k~~~~~ 201 (205)
T PF01863_consen 177 HPN-----HSKRFW-----------ALVEKYMPDYKERRKW 201 (205)
T ss_pred cCC-----CCHHHH-----------HHHHHHCcCHHHHHHH
Confidence 654 333444 4456778887654443
No 20
>PF10023 DUF2265: Predicted aminopeptidase (DUF2265); InterPro: IPR014553 This group represents a predicted aminopeptidase.
Probab=86.06 E-value=0.71 Score=47.63 Aligned_cols=40 Identities=28% Similarity=0.252 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHhcCccCccccchhHhhhhHHHHHHHHHHhhh
Q 006262 302 QIMAISTSHEVAHQWFGNLVTMEWWTHLWLNEGFATWISYMATDIM 347 (653)
Q Consensus 302 ~~~~~~iaHElaHqWfGnlVt~~~w~d~WL~EGfA~y~~~~~~~~~ 347 (653)
..++.+|.||+|||=+. .+ +|.=+||+||++.+...+.+.
T Consensus 163 ~~LA~LIfHELaHq~~Y----v~--~dt~FNEsfAtfVe~~G~~~w 202 (337)
T PF10023_consen 163 GELARLIFHELAHQTLY----VK--GDTAFNESFATFVEREGARRW 202 (337)
T ss_pred hHHHHHHHHHHhhceee----cC--CCchhhHHHHHHHHHHHHHHH
Confidence 35889999999999432 22 466789999999998877654
No 21
>PRK04860 hypothetical protein; Provisional
Probab=85.62 E-value=1.4 Score=40.76 Aligned_cols=70 Identities=19% Similarity=0.246 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCcceeecCCCCccccc--ccccceeecceeeecCCCCCHHHHHHHHHHHHHHHHHHH
Q 006262 239 ALDVAIKSLGIYTEFFSTPYPLPKLDMVAVSEFHAGAME--NFGLIVYRENELLYNEKTSTANRKQIMAISTSHEVAHQW 316 (653)
Q Consensus 239 ~l~~~~~~l~~~e~~fg~~yp~~kld~V~~P~~~~game--~~Gli~~~e~~ll~~~~~s~~~~~~~~~~~iaHElaHqW 316 (653)
+...+...+..-+++||.|++.|++.+-. ....||+. .-+-|.+... ++.+ .....+..+|+||+||.|
T Consensus 5 ~~~~~~~~~~~a~~~f~~~f~~p~~~f~~--R~rtaG~~~l~~~~I~~Np~--ll~~-----~~~~~l~~~v~HEl~H~~ 75 (160)
T PRK04860 5 VMRRLRECLAQANLYFKRTFPEPKVSYTQ--RGTSAGTAWLQSNEIRLNPV--LLLE-----NQQAFIDEVVPHELAHLL 75 (160)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCEEEEee--cchhhcchhHhcCCeeeCHH--HHhh-----CcHHHHHhHHHHHHHHHH
Confidence 34456667777889999888876654322 22224432 1223333322 2221 134557889999999987
Q ss_pred h
Q 006262 317 F 317 (653)
Q Consensus 317 f 317 (653)
-
T Consensus 76 ~ 76 (160)
T PRK04860 76 V 76 (160)
T ss_pred H
Confidence 4
No 22
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=83.41 E-value=1.2 Score=40.73 Aligned_cols=67 Identities=21% Similarity=0.247 Sum_probs=34.0
Q ss_pred HHHHHH-HHhCCCCCCCCcceeecCCCCcccccccccceeecceeeecCCCCCHHHHHHHHHHHHHHHHHHHhc
Q 006262 246 SLGIYT-EFFSTPYPLPKLDMVAVSEFHAGAMENFGLIVYRENELLYNEKTSTANRKQIMAISTSHEVAHQWFG 318 (653)
Q Consensus 246 ~l~~~e-~~fg~~yp~~kld~V~~P~~~~game~~Gli~~~e~~ll~~~~~s~~~~~~~~~~~iaHElaHqWfG 318 (653)
.++-++ .+|+-++|-+ .+..-.... -.||.-..+...+.+++..........+..+|.|||||.+..
T Consensus 6 ~~~~~n~~~F~~~l~~~--~i~w~~r~~----~~~G~~~~~~~~I~ln~~l~~~~~~~~l~~~l~HEm~H~~~~ 73 (146)
T smart00731 6 RLEDASLRVFGRKLPHP--KVVWNKRLR----KTGGRCLLKSAEIRLNPKLLTENGRDRLRETLLHELCHAALY 73 (146)
T ss_pred HHHHHHHHHHCCCCCCC--EEEEehhhh----hhhHHhhcCCCEEEeCHHHHhhccHHHHHhhHHHHHHHHHHH
Confidence 333344 7888777755 222212111 113333333333444433222122345778999999999974
No 23
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=79.99 E-value=2.2 Score=44.40 Aligned_cols=31 Identities=35% Similarity=0.582 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHhcCccCccccchhHhhhhHHHHHHHHHHhh
Q 006262 304 MAISTSHEVAHQWFGNLVTMEWWTHLWLNEGFATWISYMATDI 346 (653)
Q Consensus 304 ~~~~iaHElaHqWfGnlVt~~~w~d~WL~EGfA~y~~~~~~~~ 346 (653)
.-.++|||+|||- | ...|.=|+|+++++..+
T Consensus 196 ~P~T~~HElAHq~-G-----------~a~E~EANFiayLac~~ 226 (318)
T PF12725_consen 196 LPFTICHELAHQL-G-----------FASEDEANFIAYLACIN 226 (318)
T ss_pred ccHHHHHHHHHHh-C-----------CCCHHHHHHHHHHHHhc
Confidence 4578999999994 3 34888899999987644
No 24
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=73.51 E-value=43 Score=30.44 Aligned_cols=48 Identities=21% Similarity=0.420 Sum_probs=34.4
Q ss_pred cccccceeecCCCcEEEEEeccCccceeEEEEEEEEeeecCCCcceEEe
Q 006262 76 EYRPSDAIMDKDDEILVLVFDEPLAVGEGILRIIFYGKLNEHTKGFYKC 124 (653)
Q Consensus 76 ~~~~~~~~~~~~~~~l~i~l~~~l~~g~~~l~i~y~g~~~~~~~G~y~~ 124 (653)
.+....+..+.+++.+.|.+++|++|| -+++|.+.+.-+....|.|.-
T Consensus 76 ~ipl~~v~~~~~~~~i~I~f~~PV~pG-~tv~V~l~~v~NP~~~G~Y~f 123 (146)
T PF10989_consen 76 SIPLAEVEWDEDGRTITITFDEPVPPG-TTVTVVLSPVRNPRSGGTYQF 123 (146)
T ss_pred ccCceEEEEcCCCCEEEEEeCCCCCCC-CEEEEEEEeeeCCCCCCeEEE
Confidence 334456788889999999999999999 455555555445555677653
No 25
>PF03272 Enhancin: Viral enhancin protein; InterPro: IPR004954 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M60 (enhancin family, clan MA(E)). The active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The viral enhancin protein, or enhancing factor, is involved in disruption of the peritrophic membrane and fusion of nucleocapsids with mid-gut cells.; GO: 0016032 viral reproduction
Probab=71.85 E-value=1.1e+02 Score=35.96 Aligned_cols=129 Identities=15% Similarity=0.230 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHhcCcc-CccccchhHhhhhHHHHHHHHHHhhhCCc---hhh---HHHHHHHhhhhhccccccCCCCcee
Q 006262 306 ISTSHEVAHQWFGNLV-TMEWWTHLWLNEGFATWISYMATDIMFPE---WKM---WTQFLRQTSHGLRLDAQEQSHPIEV 378 (653)
Q Consensus 306 ~~iaHElaHqWfGnlV-t~~~w~d~WL~EGfA~y~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~D~~~~~~p~~~ 378 (653)
-.+-|||+|.+=|..+ .-..+++.| |-=||.++++..+...... |-+ ........+.+. ..+..
T Consensus 238 W~~LHEIgHgYd~~F~~n~~~~~EVW-nNI~~d~yQ~~~~~~~e~~~~~wly~~G~r~~~e~~i~~~----i~~~~---- 308 (775)
T PF03272_consen 238 WGALHEIGHGYDFGFTRNGTYLNEVW-NNILADRYQYTYMTQDERQTDGWLYDYGQRERVEREIIAL----IDNNK---- 308 (775)
T ss_pred chhhhhhhhhcceeEeeCCcchhhhh-hhhhhhhhhhhhcChhhhhhccceecCCchHHHHHHHHHH----HhcCC----
Confidence 3678999999988887 444667888 7788888888765421111 110 000000000000 00001
Q ss_pred ecCChhhhhhhccccc-chhhhHHHHHHHHhhCHHHHHHHHHHHHHhcccCCCCh--HHHHHHHHhh-cCCCHHHHHHHH
Q 006262 379 EVHRADEIDQVFDAIS-YNKGSAVIRMLQSYLGEDIFQKSLSLYMKKYAWKNVET--EDLWSVLSEE-SGINITSLMECW 454 (653)
Q Consensus 379 ~~~~~~~~~~~f~~i~-Y~Kg~~vl~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~--~df~~~l~~~-sg~~l~~~~~~W 454 (653)
.|+... -.|=..+..|+...-|+++|++.=+.|=+. .-.+..+ -.+++-+... ++.|+..+++.|
T Consensus 309 ----------~~~~w~~r~rL~~l~~~m~~~~G~~~f~~~n~~~R~~-~~~~~~~~~~~i~d~l~~~~~~~D~~p~~~l~ 377 (775)
T PF03272_consen 309 ----------PFDSWDLRERLIFLTWLMNTKAGKDAFTEMNQEYRQL-NTNGFNPNDHQIFDWLASLYSGYDFTPYFQLV 377 (775)
T ss_pred ----------CcccccHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh-ccCCCCcccccHHHHHHHhhcCCchHhHHHHh
Confidence 122222 235555555888889999998877777554 2222211 2333444444 888999998888
No 26
>PF01447 Peptidase_M4: Thermolysin metallopeptidase, catalytic domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR013856 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases that belong to the MEROPS peptidase family M4 (thermolysin family, clan MA(E)). The protein fold of the peptidase domain of thermolysin, is the type example for members of the clan MA. The thermolysin family is composed only of secreted eubacterial endopeptidases. The zinc-binding residues are H-142, H-146 and E-166, with E-143 acting as the catalytic residue. Thermolysin also contains 4 calcium-binding sites, which contribute to its unusual thermostability. The family also includes enzymes from a number of pathogens, including Legionella and Listeria, and the protein pseudolysin, all with a substrate specificity for an aromatic residue in the P1' position. Three-dimensional structure analysis has shown that the enzymes undergo a hinge-bend motion during catalysis. Pseudolysin has a broader specificity, acting on large molecules such as elastin and collagen, possibly due to its wider active site cleft []. This entry represents a domain found in peptidase M4 family members.; GO: 0004222 metalloendopeptidase activity; PDB: 3NQX_A 3NQZ_B 3NQY_B 1BQB_A 1U4G_A 1EZM_A 3DBK_A 1ESP_A 1NPC_A 1LND_E ....
Probab=69.58 E-value=8.3 Score=35.28 Aligned_cols=27 Identities=22% Similarity=0.161 Sum_probs=20.4
Q ss_pred chhHHHHHHHHHHHHHHHHHhCCCCCCC
Q 006262 234 SEGKHALDVAIKSLGIYTEFFSTPYPLP 261 (653)
Q Consensus 234 ~~~~~~l~~~~~~l~~~e~~fg~~yp~~ 261 (653)
..+..|...+.++.+||++.|| .-++.
T Consensus 67 ~~~vdA~~~~~~v~d~y~~~~g-r~siD 93 (150)
T PF01447_consen 67 SAAVDAHYNAGKVYDYYKNVFG-RNSID 93 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS-S-STT
T ss_pred cHHHHHHHhHHHHHHHHHHHHC-CCCcC
Confidence 4556677788999999999999 55554
No 27
>PF12315 DUF3633: Protein of unknown function (DUF3633); InterPro: IPR022087 This domain family is found in bacteria and eukaryotes, and is approximately 210 amino acids in length. The family is found in association with PF00412 from PFAM.
Probab=68.74 E-value=8.2 Score=36.91 Aligned_cols=41 Identities=17% Similarity=0.232 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHhcCccCccccchhHhhhhHHHHHHHHHHhh
Q 006262 304 MAISTSHEVAHQWFGNLVTMEWWTHLWLNEGFATWISYMATDI 346 (653)
Q Consensus 304 ~~~~iaHElaHqWfGnlVt~~~w~d~WL~EGfA~y~~~~~~~~ 346 (653)
...++|||+.|-|.- ..-----+.++-||++..+++.+++.
T Consensus 93 ~gsiLAHE~mHa~Lr--l~g~~~L~~~vEEGiCqvla~~wL~~ 133 (212)
T PF12315_consen 93 TGSILAHELMHAWLR--LNGFPNLSPEVEEGICQVLAYLWLES 133 (212)
T ss_pred HhhHHHHHHHHHHhc--ccCCCCCChHHHHHHHHHHHHHHHhh
Confidence 457899999999972 11111226789999999999997764
No 28
>COG2719 SpoVR Uncharacterized conserved protein [Function unknown]
Probab=65.11 E-value=48 Score=35.38 Aligned_cols=51 Identities=22% Similarity=0.296 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhcCccCccccchhHhhhhHHHHHHHHHHhhhCCchhhHHHHHHHhh
Q 006262 306 ISTSHEVAHQWFGNLVTMEWWTHLWLNEGFATWISYMATDIMFPEWKMWTQFLRQTS 362 (653)
Q Consensus 306 ~~iaHElaHqWfGnlVt~~~w~d~WL~EGfA~y~~~~~~~~~~~~~~~~~~~~~~~~ 362 (653)
-.|..+.| |+|..-...+ -+|||-|+|..+.++..+|-+...-..++.+.+
T Consensus 251 l~ivR~ea-~YF~PQ~qTk-----VMNEGWAtfWHytiln~lydE~~~~~~~~lEfL 301 (495)
T COG2719 251 LRIVRKEA-QYFYPQRQTK-----VMNEGWATFWHYTILNHLYDEGKLTERAMLEFL 301 (495)
T ss_pred HHHHHHHH-HHhcchHHHH-----HhhhhHHHHHHHHHHHhhhhhcccChHHHHHHH
Confidence 34455554 4444333333 589999999999999988877665555544443
No 29
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=64.69 E-value=5.1 Score=43.08 Aligned_cols=58 Identities=19% Similarity=0.162 Sum_probs=35.6
Q ss_pred CCCCcceeecCCCCcccccccccceeecceeeecCCCCCHHHHHHHHHHHHHHHHHHHhcCcc
Q 006262 259 PLPKLDMVAVSEFHAGAMENFGLIVYRENELLYNEKTSTANRKQIMAISTSHEVAHQWFGNLV 321 (653)
Q Consensus 259 p~~kld~V~~P~~~~game~~Gli~~~e~~ll~~~~~s~~~~~~~~~~~iaHElaHqWfGnlV 321 (653)
|-..++++.|-+-...|...+|--++-.+.++...+ +..+++.+||||++|-==++++
T Consensus 90 ~~~~f~f~lV~d~~iNAFA~~Gg~v~vntGLll~ae-----~esElagViAHEigHv~qrH~a 147 (484)
T COG4783 90 VKTPFTFFLVNDDSINAFATPGGYVVVNTGLLLTAE-----NESELAGVIAHEIGHVAQRHLA 147 (484)
T ss_pred CCCCeEEEEecCCccchhhcCCceEEEehHHHHhcC-----CHHHHHHHHHHHHHHHhhhhHH
Confidence 445578888877666666665544333333443322 3456899999999995444433
No 30
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=64.48 E-value=19 Score=30.12 Aligned_cols=61 Identities=15% Similarity=0.189 Sum_probs=31.0
Q ss_pred cCEEEEEec-Cce--eEEEEEEecCCccccccceeecCCCcEEEEEeccCccceeEEEEEEEEe
Q 006262 52 TNFIVLNAL-ELN--VHEVLFTSSHNQEYRPSDAIMDKDDEILVLVFDEPLAVGEGILRIIFYG 112 (653)
Q Consensus 52 ~~~i~L~~~-~l~--i~~v~~~~~~~~~~~~~~~~~~~~~~~l~i~l~~~l~~g~~~l~i~y~g 112 (653)
...|.|... .++ ...+.+.......+.......+.....+++.++.+|++|.|+|.-+-.+
T Consensus 19 P~~v~L~F~e~v~~~~s~v~v~~~~g~~v~~~~~~~~~~~~~~~~~l~~~l~~G~YtV~wrvvs 82 (97)
T PF04234_consen 19 PEEVTLTFSEPVEPGFSSVTVTDPDGKRVDLGEPTVDGDGKTLTVPLPPPLPPGTYTVSWRVVS 82 (97)
T ss_dssp -SSEEEEESS---CCC-EEEEEEEEETTSCTCEEEEEESTTEEEEEESS---SEEEEEEEEEEE
T ss_pred CCEEEEEeCCCCccCccEEEEEcCCCceeecCcceecCCceEEEEECCCCCCCceEEEEEEEEe
Confidence 445555543 233 5566665421122233333334456799999998899999988765544
No 31
>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function. A conserved H-E-X-X-H motif is suggestive of a catalytic active site and shows similarity to IPR001915 from INTERPRO.; PDB: 3DTE_A 3DTK_A 3DTI_A.
Probab=63.86 E-value=8.2 Score=33.14 Aligned_cols=32 Identities=16% Similarity=0.172 Sum_probs=20.1
Q ss_pred cceeeecCCCCCHHHHHHHHHHHHHHHHHHHhcCcc
Q 006262 286 ENELLYNEKTSTANRKQIMAISTSHEVAHQWFGNLV 321 (653)
Q Consensus 286 e~~ll~~~~~s~~~~~~~~~~~iaHElaHqWfGnlV 321 (653)
...++.++..+ ..+...+++|||+|.+++..-
T Consensus 28 ~~~I~in~~~~----~~~~~f~laHELgH~~~~~~~ 59 (122)
T PF06114_consen 28 NPIIFINSNLS----PERQRFTLAHELGHILLHHGD 59 (122)
T ss_dssp TTEEEEESSS-----HHHHHHHHHHHHHHHHHHH-H
T ss_pred CCEEEECCCCC----HHHHHHHHHHHHHHHHhhhcc
Confidence 33455555522 223467899999999998654
No 32
>PRK04351 hypothetical protein; Provisional
Probab=63.34 E-value=7.7 Score=35.43 Aligned_cols=60 Identities=17% Similarity=0.278 Sum_probs=30.4
Q ss_pred HHHHHHhCCCCCCCCcceeecCCC-CcccccccccceeecceeeecCCCCCHHHHHHHHHHHHHHHHHH
Q 006262 248 GIYTEFFSTPYPLPKLDMVAVSEF-HAGAMENFGLIVYRENELLYNEKTSTANRKQIMAISTSHEVAHQ 315 (653)
Q Consensus 248 ~~~e~~fg~~yp~~kld~V~~P~~-~~game~~Gli~~~e~~ll~~~~~s~~~~~~~~~~~iaHElaHq 315 (653)
++-+++|+.|+|. .+..-... ..||.- .++...+-+++..-.......+..+|+|||+|-
T Consensus 12 ~~s~~~F~~~f~~---~v~~n~RlrttgG~~-----~l~~~~I~lnp~ll~~~~~~~l~~vv~HElcH~ 72 (149)
T PRK04351 12 EISLEYFGKPFRH---QAYFNKRLRTTGGRY-----LLKDHHIEFNPKMLEEYGLEELIGIIKHELCHY 72 (149)
T ss_pred HHHHHHhCCCCCc---EEEEeccchhhhhee-----ecCCCeEEeCHHHHhhccHHHHHhhHHHHHHHH
Confidence 3446889877762 33332222 122221 122333333333222222456789999999995
No 33
>PF11940 DUF3458: Domain of unknown function (DUF3458); InterPro: IPR024601 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain, which contains a conserved FSAPV sequence motif, is found in the C-terminal of alanyl aminopeptidases that belong to MEROPS peptidase family M1 (aminopeptidase N, clan MA). ; PDB: 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A 3PUU_A 3B37_A 3B2P_A 3B3B_A ....
Probab=61.90 E-value=74 Score=33.85 Aligned_cols=72 Identities=19% Similarity=0.166 Sum_probs=39.6
Q ss_pred EEEEEEEeeecCCCCCCCeeEEEEEEEECC--ccc-----ceeeEeecceeEEEecCCCCCCCCccccccccCCCceEEe
Q 006262 471 LLEFKQSQFVSSGLQGDGRWTIPITLSLGS--YNN-----QRNFLLESQSQSVDISEMLPSSDGKLCSFKECDETLWIKV 543 (653)
Q Consensus 471 ~i~l~Q~rf~~~~~~~~~~w~iPl~~~~~~--~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~wi~~ 543 (653)
+++++|..-...+...+..|.|||.+..-+ +.. ...+.+++.++++.+..+. + .-..-+
T Consensus 6 ~Ltl~Q~~p~tpgq~~K~P~~IPv~~gLl~~~G~~~~~~~~~vl~L~~~~qtf~F~~v~-----------~---~PvpSl 71 (367)
T PF11940_consen 6 TLTLSQSTPPTPGQPEKQPLHIPVRVGLLDPDGKELPLRLERVLELTEAEQTFTFEGVS-----------E---KPVPSL 71 (367)
T ss_dssp EEEEEEEE--BTTBSS-----EEEEEEEE-TTS-B-SEEESEEEEE-SSEEEEEES--------------S-----EEEE
T ss_pred EEEEEecCCCCCCCCCCCCeeeeeEEEEECCCCCCccCCCCceEEeccCeEEEEEeCCC-----------C---Cceeeh
Confidence 577889876555555566899999985533 222 1235678888999887642 1 236788
Q ss_pred ccCceeEEEEEcC
Q 006262 544 NVEQSGFYRVIYD 556 (653)
Q Consensus 544 N~~~~gyyrV~Yd 556 (653)
+-+.+.+-++.||
T Consensus 72 lRgFSAPV~l~~~ 84 (367)
T PF11940_consen 72 LRGFSAPVKLEYD 84 (367)
T ss_dssp STTG-SSSEEE--
T ss_pred hcCcccceEecCC
Confidence 9999999999987
No 34
>COG1451 Predicted metal-dependent hydrolase [General function prediction only]
Probab=61.11 E-value=54 Score=32.21 Aligned_cols=93 Identities=16% Similarity=0.244 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCcceeecCCCCcccccccccceeecceeeecCCCCCHHHHHHHHHHHHHHHHHHH
Q 006262 237 KHALDVAIKSLGIYTEFFSTPYPLPKLDMVAVSEFHAGAMENFGLIVYRENELLYNEKTSTANRKQIMAISTSHEVAHQW 316 (653)
Q Consensus 237 ~~~l~~~~~~l~~~e~~fg~~yp~~kld~V~~P~~~~game~~Gli~~~e~~ll~~~~~s~~~~~~~~~~~iaHElaHqW 316 (653)
+.+.+.....+..+.+.+|.++.--++. ..-. -||-.+... .+.++-... ......+..+++||+||-=
T Consensus 119 ~~~~~~l~~~~~~~~~~l~~~~~~~~ik--~~k~-------~WGScs~~~-~i~~~~~l~-~~p~~~i~YVvvHELaHLk 187 (223)
T COG1451 119 EILREILEIRLKEYAKKLGVPPRAIKLK--NMKR-------RWGSCSKAG-EIRFNWRLV-MAPEEVIDYVVVHELAHLK 187 (223)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccceeee--eccc-------eeeeecCCC-cEEeehhhh-cCCHHHHHHHHHHHHHHHh
Confidence 3555667777788888888765422222 1111 244333333 132222211 1123457889999999998
Q ss_pred hcCccCccccchhHhhhhHHHHHHHHHHhhhCCchhhHHH
Q 006262 317 FGNLVTMEWWTHLWLNEGFATWISYMATDIMFPEWKMWTQ 356 (653)
Q Consensus 317 fGnlVt~~~w~d~WL~EGfA~y~~~~~~~~~~~~~~~~~~ 356 (653)
..|- -..+| ..++.++|++.....
T Consensus 188 e~nH-----s~~Fw-----------~lv~~~~P~~~~~~~ 211 (223)
T COG1451 188 EKNH-----SKRFW-----------RLVEKYMPDYRAAKR 211 (223)
T ss_pred hhhc-----cHHHH-----------HHHHHHCCChHHHHH
Confidence 8772 22344 445677888765544
No 35
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=59.03 E-value=33 Score=30.18 Aligned_cols=60 Identities=17% Similarity=0.186 Sum_probs=36.2
Q ss_pred CEEEEEec---CceeEEEEEEecCCccccccceeecCCC-cEEEEEeccCccceeEEEEEEEEe
Q 006262 53 NFIVLNAL---ELNVHEVLFTSSHNQEYRPSDAIMDKDD-EILVLVFDEPLAVGEGILRIIFYG 112 (653)
Q Consensus 53 ~~i~L~~~---~l~i~~v~~~~~~~~~~~~~~~~~~~~~-~~l~i~l~~~l~~g~~~l~i~y~g 112 (653)
..|.|+.. ...+..+++.+.+...........+..+ .+++|.++++|++|.|+|.-+..+
T Consensus 47 ~~i~L~Fse~ve~~fs~~~l~~~d~~~v~t~~~~~~~~~~~~l~v~l~~~L~aG~Y~v~WrvvS 110 (127)
T COG2372 47 AAITLEFSEGVEPGFSGAKLTGPDGEEVATAGTKLDEQNHTQLEVPLPQPLKAGVYTVDWRVVS 110 (127)
T ss_pred eeEEEecCCccCCCcceeEEECCCCCccccCcccccccCCcEEEecCcccCCCCcEEEEEEEEe
Confidence 35666644 2344566665432223333333333333 469999999999999998877654
No 36
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=55.97 E-value=8.8 Score=35.26 Aligned_cols=19 Identities=21% Similarity=0.092 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 006262 300 RKQIMAISTSHEVAHQWFG 318 (653)
Q Consensus 300 ~~~~~~~~iaHElaHqWfG 318 (653)
....+..+|.|||+|.|..
T Consensus 56 ~~~~~~~tL~HEm~H~~~~ 74 (157)
T PF10263_consen 56 PEEELIDTLLHEMAHAAAY 74 (157)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3557889999999999984
No 37
>COG3227 LasB Zinc metalloprotease (elastase) [Amino acid transport and metabolism]
Probab=54.12 E-value=14 Score=39.73 Aligned_cols=111 Identities=15% Similarity=0.180 Sum_probs=59.6
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHhCCCCCCC--CcceeecCCCCcccccccccceeecceeeecCCCCC-HHHHHHHHH
Q 006262 230 VGKSSEGKHALDVAIKSLGIYTEFFSTPYPLP--KLDMVAVSEFHAGAMENFGLIVYRENELLYNEKTST-ANRKQIMAI 306 (653)
Q Consensus 230 ~~~~~~~~~~l~~~~~~l~~~e~~fg~~yp~~--kld~V~~P~~~~game~~Gli~~~e~~ll~~~~~s~-~~~~~~~~~ 306 (653)
++....+..|-..+.++.+||.++||. -.++ -+.++..--| | -++.-....-..++|...-.. .........
T Consensus 265 ~~~~~a~~dAh~~~g~vyD~yk~~fgr-~S~Dn~g~~l~s~vHy--G--~~ynNAfWdG~qMvyGDGDG~~f~~~S~sLD 339 (507)
T COG3227 265 PSSDEAAVDAHYNAGKVYDYYKNTFGR-NSYDNNGMPLVSTVHY--G--KNYNNAFWDGDQMVYGDGDGSFFTPFSGSLD 339 (507)
T ss_pred ccchhhhHHHHhhcchHHHHHHHHhcc-cCcCCCCCceEEEEee--c--cccccccccCceeEeecCCcceecccccccc
Confidence 334445666777889999999999993 3333 2334332222 1 111122222233444332110 000111246
Q ss_pred HHHHHHHHHHhc---CccCccccchhHhhhhHHHHHHHHHHhhh
Q 006262 307 STSHEVAHQWFG---NLVTMEWWTHLWLNEGFATWISYMATDIM 347 (653)
Q Consensus 307 ~iaHElaHqWfG---nlVt~~~w~d~WL~EGfA~y~~~~~~~~~ 347 (653)
++||||.|.--+ +++.-.-- -=|||+|+.-+.-.+....
T Consensus 340 VvAHElTHGvtq~tA~L~Y~~qs--GALNEsfSDvfG~~i~~~~ 381 (507)
T COG3227 340 VVAHELTHGVTQQTAGLIYRGQS--GALNESFSDVFGTLIEQYV 381 (507)
T ss_pred eehhhhcchhhhhccCceecCCC--CchhhHHHHHHHHHHHHHh
Confidence 899999996544 45544332 2489999999986654433
No 38
>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]
Probab=51.38 E-value=24 Score=36.26 Aligned_cols=64 Identities=17% Similarity=0.181 Sum_probs=40.5
Q ss_pred HHHhCCCCCCCCcceeecCCCCccccccc---ccceeecceeeecCCCCCHHHHHHHHHHHHHHHHHHHhcCccC
Q 006262 251 TEFFSTPYPLPKLDMVAVSEFHAGAMENF---GLIVYRENELLYNEKTSTANRKQIMAISTSHEVAHQWFGNLVT 322 (653)
Q Consensus 251 e~~fg~~yp~~kld~V~~P~~~~game~~---Gli~~~e~~ll~~~~~s~~~~~~~~~~~iaHElaHqWfGnlVt 322 (653)
...-+++ +.+++.++-.|...+-++... |.|.+.+. ++- ..+..++..++|||++|.=-++.+.
T Consensus 109 a~~~~~~-~~~~v~i~~~~~~NAFa~g~~~~~~~V~vt~g-Ll~------~l~~dEl~aVlaHElgHi~~rd~~~ 175 (302)
T COG0501 109 ARQAGIP-HMPEVYILETPQPNAFALGGGPKNGRVVVTTG-LLD------LLNDDELEAVLAHELGHIKNRHTLV 175 (302)
T ss_pred HHHCCCC-CCCeeEEecCCCccceecCCCCCCeeEEecHH-HHh------hCCHHHHHHHHHHHHHHHhcccHHH
Confidence 3344533 246777776666555566654 77777666 332 1134568899999999998776654
No 39
>PRK10301 hypothetical protein; Provisional
Probab=49.66 E-value=1.1e+02 Score=26.84 Aligned_cols=26 Identities=15% Similarity=0.225 Sum_probs=19.5
Q ss_pred CCcEEEEEeccCccceeEEEEEEEEe
Q 006262 87 DDEILVLVFDEPLAVGEGILRIIFYG 112 (653)
Q Consensus 87 ~~~~l~i~l~~~l~~g~~~l~i~y~g 112 (653)
+...+.+.++.+|++|.|+|+-+-.+
T Consensus 84 ~~~~~~v~l~~~L~~G~YtV~Wrvvs 109 (124)
T PRK10301 84 DQKQLIVPLADSLKPGTYTVDWHVVS 109 (124)
T ss_pred CCcEEEEECCCCCCCccEEEEEEEEe
Confidence 34568888888899999987655544
No 40
>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification. ; InterPro: IPR001915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M48 (Ste24 endopeptidase family, clan M-); members of both subfamily are represented. The members of this set of proteins are mostly described as probable protease htpX homologue (3.4.24 from EC) or CAAX prenyl protease 1, which proteolytically removes the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and Golgi, binding one zinc ion per subunit. In Saccharomyces cerevisiae (Baker's yeast) Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification is complete. The Ste24p contains multiple predicted membrane spans, a zinc metalloprotease motif (HEXXH), and a COOH-terminal ER retrieval signal (KKXX). The HEXXH protease motif is critical for Ste24p activity, since Ste24p fails to function when conserved residues within this motif are mutated. The Ste24p homologues occur in a diverse group of organisms, including Escherichia coli, Schizosaccharomyces pombe (Fission yeast), Haemophilus influenzae, and Homo sapiens (Human), which indicates that the gene is highly conserved throughout evolution. Ste24p and the proteins related to it define a subfamily of proteins that are likely to function as intracellular, membrane-associated zinc metalloproteases []. HtpX is a zinc-dependent endoprotease member of the membrane-localized proteolytic system in E. coli, which participates in the proteolytic quality control of membrane proteins in conjunction with FtsH, a membrane-bound and ATP-dependent protease. Biochemical characterisation revealed that HtpX undergoes self-degradation upon cell disruption or membrane solubilization. It can also degraded casein and cleaves solubilized membrane proteins, for example, SecY []. Expression of HtpX in the plasma membrane is under the control of CpxR, with the metalloproteinase active site of HtpX located on the cytosolic side of the membrane. This suggests a potential role for HtpX in the response to mis-folded proteins [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 3CQB_A 3C37_B.
Probab=49.58 E-value=19 Score=35.02 Aligned_cols=69 Identities=17% Similarity=0.196 Sum_probs=34.8
Q ss_pred HHHHHHHHhCCCCCCCCcceeecCCCCcccccccc-c---ceeecceeeecCCCCCHHHHHHHHHHHHHHHHHHHhcCcc
Q 006262 246 SLGIYTEFFSTPYPLPKLDMVAVSEFHAGAMENFG-L---IVYRENELLYNEKTSTANRKQIMAISTSHEVAHQWFGNLV 321 (653)
Q Consensus 246 ~l~~~e~~fg~~yp~~kld~V~~P~~~~game~~G-l---i~~~e~~ll~~~~~s~~~~~~~~~~~iaHElaHqWfGnlV 321 (653)
.++-+.+..|.+.|.+++-++-.|. ..|.-..+ . |.+... ++... +..++..++|||++|-.-++..
T Consensus 36 ~v~~l~~~~~~~~~~~~v~v~~~~~--~NA~~~g~~~~~~I~v~~~-ll~~~------~~~el~aVlaHElgH~~~~h~~ 106 (226)
T PF01435_consen 36 IVEELARRAGLGIPPPRVYVIDSPS--PNAFATGGGPRKRIVVTSG-LLESL------SEDELAAVLAHELGHIKHRHIL 106 (226)
T ss_dssp HHHHHHHHHHCTSS--EEEEE--SS--EEEEEETTTC--EEEEEHH-HHHHS------SHHHHHHHHHHHHHHHHTTHCC
T ss_pred HHHHHHHHhcCCCCCCeEEEEcCCC--CcEEEEccCCCcEEEEeCh-hhhcc------cHHHHHHHHHHHHHHHHcCCcc
Confidence 3333333345456655554444444 33333222 2 444444 33211 2456889999999999987765
Q ss_pred Cc
Q 006262 322 TM 323 (653)
Q Consensus 322 t~ 323 (653)
..
T Consensus 107 ~~ 108 (226)
T PF01435_consen 107 KS 108 (226)
T ss_dssp CC
T ss_pred hH
Confidence 44
No 41
>cd04269 ZnMc_adamalysin_II_like Zinc-dependent metalloprotease; adamalysin_II_like subfamily. Adamalysin II is a snake venom zinc endopeptidase. This subfamily contains other snake venom metalloproteinases, as well as membrane-anchored metalloproteases belonging to the ADAM family. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=49.24 E-value=74 Score=30.26 Aligned_cols=14 Identities=29% Similarity=0.710 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHH
Q 006262 303 IMAISTSHEVAHQW 316 (653)
Q Consensus 303 ~~~~~iaHElaHqW 316 (653)
..+.++||||+|++
T Consensus 130 ~~a~~~AHElGH~l 143 (194)
T cd04269 130 LFAVTMAHELGHNL 143 (194)
T ss_pred HHHHHHHHHHHhhc
Confidence 45789999999996
No 42
>PF13699 DUF4157: Domain of unknown function (DUF4157)
Probab=47.24 E-value=28 Score=27.98 Aligned_cols=64 Identities=11% Similarity=0.099 Sum_probs=31.5
Q ss_pred HHHHHHHHHhCCCCCCCCcceeecCCCCc--ccccccccceeecceeeecCCC---CCHHHHHHHHHHHHHHHHHHH
Q 006262 245 KSLGIYTEFFSTPYPLPKLDMVAVSEFHA--GAMENFGLIVYRENELLYNEKT---STANRKQIMAISTSHEVAHQW 316 (653)
Q Consensus 245 ~~l~~~e~~fg~~yp~~kld~V~~P~~~~--game~~Gli~~~e~~ll~~~~~---s~~~~~~~~~~~iaHElaHqW 316 (653)
.+...+|..||.+ +.+..+-.=|.-.. ..|.- --+|.... +.+.+.. ++. .-..+++||++|-+
T Consensus 5 ~~r~~~e~~~G~d--l~~Vrvh~~~~a~~~~~~~~A-~A~T~G~~-I~f~~g~~~~~s~----~~~~llaHEl~Hv~ 73 (79)
T PF13699_consen 5 SIRSRLERAFGAD--LSDVRVHTGPAASRAAAALGA-RAFTVGND-IYFAPGKYNPDSP----EGRALLAHELAHVV 73 (79)
T ss_pred HHHHHHHHHhCCC--ccceEEEeCCchhhhhhccCC-eEEEECCE-EEEcCCCcCCCCC----CcchhHhHHHHHHH
Confidence 3456789999955 55655544332111 11111 12333333 4442221 111 13478999999954
No 43
>PF08325 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1-like metalloprotease) domain is a globular domain related to the zincin-like superfamily of Zn-dependent peptidase. Since the WLM domain contains all known active site residues of zincins, it is predicted to be a catalytically active peptidase domain. The WLM domain is a eukaryotic domain represented in plants, fungi, Plasmodium, and kinetoplastids. By contrast, it is absent in animals, Cryptosporidium, and Microsporidia, suggesting that it has been lost on multiple occasions during the evolution of eukaryotes. The WLM domain is found either in stand-alone form or in association with other domains such as the RanBP2 zinc finger , the ubiquitin domain, or the PUB/PUG domain. This domain could function as a specific de-SUMOylating domain of distinct protein complexes in the nucleus and the cytoplasm []. It has been suggested to form a segregated alpha/beta structure with eight helices and five strands. Proteins containign this domain include yeast WSS1 (a weak suppressor of the Ub-related protein SMT3), and various putative metalloproteases from plant and fungal species.
Probab=46.26 E-value=14 Score=35.24 Aligned_cols=25 Identities=20% Similarity=0.126 Sum_probs=19.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhcCc
Q 006262 296 STANRKQIMAISTSHEVAHQWFGNL 320 (653)
Q Consensus 296 s~~~~~~~~~~~iaHElaHqWfGnl 320 (653)
........+..++.|||||.++|+-
T Consensus 74 ~~fl~~~~i~~t~lHELaH~~~~~H 98 (186)
T PF08325_consen 74 GGFLPYETILGTMLHELAHNVHGPH 98 (186)
T ss_pred CCEeeHHHHHHHHHHHHHhcccCCc
Confidence 3334456788999999999999883
No 44
>PRK03982 heat shock protein HtpX; Provisional
Probab=45.98 E-value=38 Score=34.69 Aligned_cols=66 Identities=17% Similarity=0.206 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhCCCCCCCCcceeecCCCCcccccc-----cccceeecceeeecCCCCCHHHHHHHHHHHHHHHHHHHh
Q 006262 243 AIKSLGIYTEFFSTPYPLPKLDMVAVSEFHAGAMEN-----FGLIVYRENELLYNEKTSTANRKQIMAISTSHEVAHQWF 317 (653)
Q Consensus 243 ~~~~l~~~e~~fg~~yp~~kld~V~~P~~~~game~-----~Gli~~~e~~ll~~~~~s~~~~~~~~~~~iaHElaHqWf 317 (653)
..+.++-+.+..|+| .+++-++ |+-...|+-. -|.|.+.+. ++- ..+..++..++|||++|-=-
T Consensus 70 L~~~v~~la~~~g~~--~p~v~v~--~~~~~NAfa~G~~~~~~~V~vt~g-Ll~------~l~~~El~AVlAHElgHi~~ 138 (288)
T PRK03982 70 LYRIVERLAERANIP--KPKVAIV--PTQTPNAFATGRDPKHAVVAVTEG-ILN------LLNEDELEGVIAHELTHIKN 138 (288)
T ss_pred HHHHHHHHHHHcCCC--CCeEEEE--eCCCcceEEeccCCCCeEEEeehH-HHh------hCCHHHHHHHHHHHHHHHHc
Confidence 344555555666754 4555444 3322223221 234434433 221 11345688999999999865
Q ss_pred cC
Q 006262 318 GN 319 (653)
Q Consensus 318 Gn 319 (653)
++
T Consensus 139 ~h 140 (288)
T PRK03982 139 RD 140 (288)
T ss_pred CC
Confidence 54
No 45
>PRK01345 heat shock protein HtpX; Provisional
Probab=45.93 E-value=34 Score=35.63 Aligned_cols=69 Identities=17% Similarity=0.108 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhCCCCCCCCcceeecCCCCcccccc---cccceeecceeeecCCCCCHHHHHHHHHHHHHHHHHHHhcC
Q 006262 243 AIKSLGIYTEFFSTPYPLPKLDMVAVSEFHAGAMEN---FGLIVYRENELLYNEKTSTANRKQIMAISTSHEVAHQWFGN 319 (653)
Q Consensus 243 ~~~~l~~~e~~fg~~yp~~kld~V~~P~~~~game~---~Gli~~~e~~ll~~~~~s~~~~~~~~~~~iaHElaHqWfGn 319 (653)
..+.++-+.+..|+| .+++-++-.+...+-+... -+.|.+.+. |+-. .+..++..++|||++|.=-++
T Consensus 69 L~~~v~~La~~agi~--~p~v~vid~~~~NAFa~G~~~~~~~V~vt~g-LL~~------L~~dEL~aVlAHElgHi~~~d 139 (317)
T PRK01345 69 LYRMVRDLARRAGLP--MPKVYIIDNPQPNAFATGRNPENAAVAATTG-LLQR------LSPEEVAGVMAHELAHVKNRD 139 (317)
T ss_pred HHHHHHHHHHHcCCC--CCcEEEEcCCCcceEEecCCCCCeEEEechH-HHhh------CCHHHHHHHHHHHHHHHHcCC
Confidence 345666666777765 4565544333222222221 123444433 3221 123568899999999986555
Q ss_pred c
Q 006262 320 L 320 (653)
Q Consensus 320 l 320 (653)
.
T Consensus 140 ~ 140 (317)
T PRK01345 140 T 140 (317)
T ss_pred H
Confidence 3
No 46
>PRK04897 heat shock protein HtpX; Provisional
Probab=45.51 E-value=26 Score=36.12 Aligned_cols=68 Identities=13% Similarity=0.090 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhCCCCCCCCcceeecCCCCccccc---ccccceeecceeeecCCCCCHHHHHHHHHHHHHHHHHHHhcC
Q 006262 243 AIKSLGIYTEFFSTPYPLPKLDMVAVSEFHAGAME---NFGLIVYRENELLYNEKTSTANRKQIMAISTSHEVAHQWFGN 319 (653)
Q Consensus 243 ~~~~l~~~e~~fg~~yp~~kld~V~~P~~~~game---~~Gli~~~e~~ll~~~~~s~~~~~~~~~~~iaHElaHqWfGn 319 (653)
..+.++-+.+..|+ |.|++-++--+...+-+.. +-+.|.+.+. ++- ..+..++..++|||++|-=-|+
T Consensus 82 L~~~v~~la~~~gi--p~p~v~v~~~~~~NAfa~G~~~~~~~v~vt~g-Ll~------~l~~~El~aVlAHElgHi~~~d 152 (298)
T PRK04897 82 LWHIVEDMAMVAQI--PMPRVFIIDDPSPNAFATGSSPKNAAVAVTTG-LLA------IMNREELEGVIGHEISHIRNYD 152 (298)
T ss_pred HHHHHHHHHHHcCC--CCCcEEEecCCCCceEEeccCCCCcEEEeehH-HHh------hCCHHHHHHHHHHHHHHHhcCC
Confidence 44556666666775 4667766543322221211 1233444332 211 1124568899999999965444
No 47
>PRK05457 heat shock protein HtpX; Provisional
Probab=43.68 E-value=33 Score=35.07 Aligned_cols=68 Identities=18% Similarity=0.255 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhCCCCCCCCcceeecCCCCcccc---cccccceeecceeeecCCCCCHHHHHHHHHHHHHHHHHHHhcCc
Q 006262 244 IKSLGIYTEFFSTPYPLPKLDMVAVSEFHAGAM---ENFGLIVYRENELLYNEKTSTANRKQIMAISTSHEVAHQWFGNL 320 (653)
Q Consensus 244 ~~~l~~~e~~fg~~yp~~kld~V~~P~~~~gam---e~~Gli~~~e~~ll~~~~~s~~~~~~~~~~~iaHElaHqWfGnl 320 (653)
.+.++-+.+..|+ |.|++-++-.+...+-+. .+-+.|.+... ++- ..+..++..++|||++|.=-|+.
T Consensus 80 ~~~v~~la~~~g~--p~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~g-Ll~------~L~~~El~aVlAHElgHi~~~d~ 150 (284)
T PRK05457 80 VETVARQARQAGI--GMPEVAIYHSPEINAFATGASKNNSLVAVSTG-LLQ------NMSRDEVEAVLAHEISHIANGDM 150 (284)
T ss_pred HHHHHHHHHhCCC--CCCCEEEEeCCCceEEEecCCCCCeEEEeehH-Hhh------hCCHHHHHHHHHHHHHHHHcCCH
Confidence 3455556666775 567776664433222222 12233444433 221 11345688999999999876653
No 48
>PF01431 Peptidase_M13: Peptidase family M13 This is family M13 in the peptidase classification. ; InterPro: IPR018497 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M13 (neprilysin family, clan MA(E)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. M13 peptidases are well-studied proteases found in a wide range of organisms including mammals and bacteria. In mammals they participate in processes such as cardiovascular development, blood-pressure regulation, nervous control of respiration, and regulation of the function of neuropeptides in the central nervous system. In bacteria they may be used for digestion of milk [, ]. The family includes eukaryotic and prokaryotic oligopeptidases, as well as some of the proteins responsible for the molecular basis of the blood group antigens e.g. Kell []. Neprilysin (3.4.24.11 from EC), is another member of this group, it is variously known as common acute lymphoblastic leukemia antigen (CALLA), enkephalinase (gp100) and neutral endopeptidase metalloendopeptidase (NEP). It is a plasma membrane-bound mammalian enzyme that is able to digest biologically-active peptides, including enkephalins []. The zinc ligands of neprilysin are known and are analogous to those in thermolysin, a related peptidase [, ]. Neprilysins, like thermolysin, are inhibited by phosphoramidon, which appears to selectively inhibit this family in mammals. The enzymes are all oligopeptidases, digesting oligo- and polypeptides, but not proteins []. Neprilysin consists of a short cytoplasmic domain, a membrane-spanning region and a large extracellular domain. The cytoplasmic domain contains a conformationally-restrained octapeptide, which is thought to act as a stop transfer sequence that prevents proteolysis and secretion [, ].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2QPJ_A 1R1I_A 1R1J_A 1Y8J_A 1R1H_A 1DMT_A 2YB9_A 3DWB_A 3ZUK_A.
Probab=42.68 E-value=24 Score=33.98 Aligned_cols=33 Identities=12% Similarity=0.171 Sum_probs=19.6
Q ss_pred eecCCCCCHHHHHHHHHHHHHHHHHHHhcCccC
Q 006262 290 LYNEKTSTANRKQIMAISTSHEVAHQWFGNLVT 322 (653)
Q Consensus 290 l~~~~~s~~~~~~~~~~~iaHElaHqWfGnlVt 322 (653)
+|++........-.+-.+|||||+|-.-...+.
T Consensus 22 ~f~~~~p~~~~yg~lG~ilahel~hafd~~g~~ 54 (206)
T PF01431_consen 22 FFDPNYPPALNYGGLGFILAHELMHAFDPEGIN 54 (206)
T ss_dssp T--TTS-HHHHHHTHHHHHHHHHHHCTSTTGGG
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 344444444455557789999999976444433
No 49
>PRK03001 M48 family peptidase; Provisional
Probab=42.17 E-value=37 Score=34.73 Aligned_cols=19 Identities=21% Similarity=0.226 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 006262 301 KQIMAISTSHEVAHQWFGN 319 (653)
Q Consensus 301 ~~~~~~~iaHElaHqWfGn 319 (653)
..++..++|||++|-=-++
T Consensus 121 ~~El~aVlAHElgHi~~~h 139 (283)
T PRK03001 121 EREIRGVMAHELAHVKHRD 139 (283)
T ss_pred HHHHHHHHHHHHHHHhCCC
Confidence 4568899999999976544
No 50
>PF13574 Reprolysin_2: Metallo-peptidase family M12B Reprolysin-like; PDB: 1KAP_P 1JIW_P 1AKL_A 1OM7_A 1OM8_A 1O0T_A 1OM6_A 1H71_P 1O0Q_A 1OMJ_A ....
Probab=42.10 E-value=17 Score=34.18 Aligned_cols=13 Identities=31% Similarity=0.314 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHH
Q 006262 304 MAISTSHEVAHQW 316 (653)
Q Consensus 304 ~~~~iaHElaHqW 316 (653)
-..++||||+||+
T Consensus 111 ~~~~~aHElGH~l 123 (173)
T PF13574_consen 111 GIDTFAHELGHQL 123 (173)
T ss_dssp HHHHHHHHHHHHH
T ss_pred eeeeehhhhHhhc
Confidence 3567999999997
No 51
>PRK03072 heat shock protein HtpX; Provisional
Probab=40.59 E-value=41 Score=34.50 Aligned_cols=68 Identities=16% Similarity=0.183 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhCCCCCCCCcceeecCCCCccccc-cc--ccceeecceeeecCCCCCHHHHHHHHHHHHHHHHHHHhcC
Q 006262 243 AIKSLGIYTEFFSTPYPLPKLDMVAVSEFHAGAME-NF--GLIVYRENELLYNEKTSTANRKQIMAISTSHEVAHQWFGN 319 (653)
Q Consensus 243 ~~~~l~~~e~~fg~~yp~~kld~V~~P~~~~game-~~--Gli~~~e~~ll~~~~~s~~~~~~~~~~~iaHElaHqWfGn 319 (653)
..+.++-+.+..|+ |.|++-++-.+...+-+.. ++ +.+...+. ++- ..+..++..++|||++|-=-|+
T Consensus 72 L~~~v~~la~~~g~--p~p~vyv~~~~~~NAFa~G~~~~~~~v~vt~g-Ll~------~l~~~El~aVlAHElgHi~~~d 142 (288)
T PRK03072 72 MYRIVRELSTAARQ--PMPRLYISPTAAPNAFATGRNPRNAAVCCTEG-ILQ------ILNERELRGVLGHELSHVYNRD 142 (288)
T ss_pred HHHHHHHHHHHcCC--CCCCEEEecCCCCceEEecCCCCCcEEEecHH-HHH------hCCHHHHHHHHHHHHHHHhcCC
Confidence 44566666677775 4567655544332221111 11 12333322 321 1124568899999999965544
No 52
>PHA02456 zinc metallopeptidase motif-containing protein
Probab=40.26 E-value=17 Score=30.66 Aligned_cols=15 Identities=27% Similarity=0.446 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHh
Q 006262 303 IMAISTSHEVAHQWF 317 (653)
Q Consensus 303 ~~~~~iaHElaHqWf 317 (653)
....+++||++|-|=
T Consensus 78 GC~~TL~HEL~H~WQ 92 (141)
T PHA02456 78 GCRDTLAHELNHAWQ 92 (141)
T ss_pred chHHHHHHHHHHHHh
Confidence 456789999999994
No 53
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=39.89 E-value=58 Score=25.54 Aligned_cols=47 Identities=15% Similarity=0.169 Sum_probs=39.0
Q ss_pred hHHHHHHHHhhCHHHHHHHHHHHHHhcccCCCChHHHHHHHHhhcCCC
Q 006262 399 SAVIRMLQSYLGEDIFQKSLSLYMKKYAWKNVETEDLWSVLSEESGIN 446 (653)
Q Consensus 399 ~~vl~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~sg~~ 446 (653)
+.++.+|...++.+.+ ..|..++++++-+.++-++|.+.+....|..
T Consensus 12 ~~L~~~l~~~l~~~~~-~~l~~~Y~~~k~~kIsR~~fvr~lR~IVGD~ 58 (70)
T PF12174_consen 12 PMLFSALSKHLPPSKM-DLLQKHYEEFKKKKISREEFVRKLRQIVGDQ 58 (70)
T ss_pred HHHHHHHHHHCCHHHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 5789999999998885 4566667778888899999999999988843
No 54
>PRK02870 heat shock protein HtpX; Provisional
Probab=38.31 E-value=62 Score=33.97 Aligned_cols=63 Identities=14% Similarity=0.181 Sum_probs=32.2
Q ss_pred HHHHHHHHHhCCCCCCCCcceeecCCCCccccc---ccccceeecceeeecCCCCCHHHHHHHHHHHHHHHHHH
Q 006262 245 KSLGIYTEFFSTPYPLPKLDMVAVSEFHAGAME---NFGLIVYRENELLYNEKTSTANRKQIMAISTSHEVAHQ 315 (653)
Q Consensus 245 ~~l~~~e~~fg~~yp~~kld~V~~P~~~~game---~~Gli~~~e~~ll~~~~~s~~~~~~~~~~~iaHElaHq 315 (653)
++++-+....|+|+ .+++-++-.+...+-++. .-+.|.+.+. ++- ..+..++..++|||++|-
T Consensus 119 ~~ve~La~~ag~p~-~p~V~vi~~~~~NAFA~G~~~~~~~Ivvt~G-LL~------~L~~dEL~aVlAHELgHi 184 (336)
T PRK02870 119 NVVEELLVAAGLRF-MPKVYIIDAPYMNAFASGYSEKSAMVAITTG-LLE------KLDRDELQAVMAHELSHI 184 (336)
T ss_pred HHHHHHHHHcCCCC-CCeEEEEcCCCCceEEecCCCCCcEEEEehH-Hhh------hCCHHHHHHHHHHHHHHH
Confidence 44444445557543 345554433322222221 2245555544 321 113456889999999996
No 55
>PRK02391 heat shock protein HtpX; Provisional
Probab=37.33 E-value=58 Score=33.51 Aligned_cols=69 Identities=12% Similarity=0.097 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhCCCCCCCCcceeecCCCCccccc---ccccceeecceeeecCCCCCHHHHHHHHHHHHHHHHHHHhcC
Q 006262 243 AIKSLGIYTEFFSTPYPLPKLDMVAVSEFHAGAME---NFGLIVYRENELLYNEKTSTANRKQIMAISTSHEVAHQWFGN 319 (653)
Q Consensus 243 ~~~~l~~~e~~fg~~yp~~kld~V~~P~~~~game---~~Gli~~~e~~ll~~~~~s~~~~~~~~~~~iaHElaHqWfGn 319 (653)
..+.++-+.+..|+| .|++-++-.+...+.+.. .-+.|.+.+. ++-. -+..++..++|||++|--=++
T Consensus 78 L~~~v~~la~~~~~~--~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~g-Ll~~------L~~~El~aVlaHElgHi~~~d 148 (296)
T PRK02391 78 LHAMVERLCALADLP--KPRVAVADSDVPNAFATGRSPKNAVVCVTTG-LMRR------LDPDELEAVLAHELSHVKNRD 148 (296)
T ss_pred HHHHHHHHHHHcCCC--CCcEEEEeCCCCceEEecCCCCCcEEEecHH-HHhh------CCHHHHHHHHHHHHHHHHcCC
Confidence 335555556677754 456665544332222211 1223443333 2211 123568899999999976655
Q ss_pred c
Q 006262 320 L 320 (653)
Q Consensus 320 l 320 (653)
.
T Consensus 149 i 149 (296)
T PRK02391 149 V 149 (296)
T ss_pred H
Confidence 3
No 56
>PF08014 DUF1704: Domain of unknown function (DUF1704); InterPro: IPR012548 This family contains many hypothetical proteins.
Probab=36.06 E-value=1.1e+02 Score=32.28 Aligned_cols=85 Identities=14% Similarity=0.109 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhCCCCCCCCcceeecCCCCcccccccccceeecceeeecCCCCCHHHHHHHHHHHHHHHH-HH-------
Q 006262 244 IKSLGIYTEFFSTPYPLPKLDMVAVSEFHAGAMENFGLIVYRENELLYNEKTSTANRKQIMAISTSHEVA-HQ------- 315 (653)
Q Consensus 244 ~~~l~~~e~~fg~~yp~~kld~V~~P~~~~game~~Gli~~~e~~ll~~~~~s~~~~~~~~~~~iaHEla-Hq------- 315 (653)
..+-++..+|++. . --++.+.+.++..++||-.-+-|.++.+.. .....+..++.||+. |.
T Consensus 116 ~~~~~~~~~y~~~-~-~~~~~V~~sddl~a~A~v~~~~l~I~~~~~---------fs~~~l~~L~~HEigvH~lt~~Ng~ 184 (349)
T PF08014_consen 116 SRLQERLKKYFGK-E-GFEVKVELSDDLLARAMVSGDRLKINKNAM---------FSERDLEALLHHEIGVHLLTTLNGR 184 (349)
T ss_pred HHHHHHHHHHhcc-c-CceEEEEEcCCcchhhcccCCeeEEcCCCC---------cCHHHHHHHHHHhhhhhhccccccc
Confidence 3344555666662 2 235566666788778876555555444321 134567889999994 52
Q ss_pred -----HhcCccCccccchhHhhhhHHHHHHHHH
Q 006262 316 -----WFGNLVTMEWWTHLWLNEGFATWISYMA 343 (653)
Q Consensus 316 -----WfGnlVt~~~w~d~WL~EGfA~y~~~~~ 343 (653)
|++...... .=..||+|.+.|+..
T Consensus 185 ~QPl~~l~~Glp~~----~~TQEGLAvl~E~l~ 213 (349)
T PF08014_consen 185 AQPLKILSLGLPGY----TPTQEGLAVLSEYLS 213 (349)
T ss_pred cCCcHHhCCCCCCC----CCCchHHHHHHHHHh
Confidence 333222111 123799999999764
No 57
>KOG2661 consensus Peptidase family M48 [Posttranslational modification, protein turnover, chaperones]
Probab=35.28 E-value=98 Score=31.93 Aligned_cols=20 Identities=25% Similarity=0.245 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHhcCc
Q 006262 301 KQIMAISTSHEVAHQWFGNL 320 (653)
Q Consensus 301 ~~~~~~~iaHElaHqWfGnl 320 (653)
...++.+++||+|||=-++.
T Consensus 272 ddglAtvLgHE~aHaVarH~ 291 (424)
T KOG2661|consen 272 DDGLATVLGHEIAHAVARHA 291 (424)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 34689999999999987764
No 58
>PRK01265 heat shock protein HtpX; Provisional
Probab=35.26 E-value=64 Score=33.63 Aligned_cols=66 Identities=17% Similarity=0.087 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhCCCCCCCCcceeecCCCCcccccc---cccceeecceeeecCCCCCHHHHHHHHHHHHHHHHHHHhc
Q 006262 244 IKSLGIYTEFFSTPYPLPKLDMVAVSEFHAGAMEN---FGLIVYRENELLYNEKTSTANRKQIMAISTSHEVAHQWFG 318 (653)
Q Consensus 244 ~~~l~~~e~~fg~~yp~~kld~V~~P~~~~game~---~Gli~~~e~~ll~~~~~s~~~~~~~~~~~iaHElaHqWfG 318 (653)
.+.++-+.+..|+ |.+++-++-.+...+-+... -+.|.+.+. ++- ..+..++..++|||++|-=-+
T Consensus 86 ~~~v~~la~~~g~--~~p~vyv~~~~~~NAfa~G~~~~~~~Ivvt~g-Ll~------~l~~~El~aVlAHElgHik~~ 154 (324)
T PRK01265 86 YSIVAEVAKYNGI--RVPKVYIADVPFPNAFAYGSPIAGKRIAITLP-LLK------ILNRDEIKAVAGHELGHLKHR 154 (324)
T ss_pred HHHHHHHHHHcCC--CCCeEEEecCCCCCeEEeccCCCCCEEEEehH-HHh------hCCHHHHHHHHHHHHHHHHcc
Confidence 3455555666775 45666555433222112111 133444333 221 113456889999999995443
No 59
>COG2856 Predicted Zn peptidase [Amino acid transport and metabolism]
Probab=34.59 E-value=1.4e+02 Score=29.08 Aligned_cols=40 Identities=13% Similarity=-0.023 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHhcCccC-----ccccchhHhhhhHHHHHHHHH
Q 006262 304 MAISTSHEVAHQWFGNLVT-----MEWWTHLWLNEGFATWISYMA 343 (653)
Q Consensus 304 ~~~~iaHElaHqWfGnlVt-----~~~w~d~WL~EGfA~y~~~~~ 343 (653)
-..++|||+.|-|+.--.. ...|...=..|.-|++++...
T Consensus 72 ~rFtlAHELGH~llH~~~~~~~~~~~~~~~~~~~E~~AN~FAa~l 116 (213)
T COG2856 72 KRFTLAHELGHALLHTDLNTRFDAEPTLQQDRKIEAEANAFAAEL 116 (213)
T ss_pred HHHHHHHHHhHHHhccccchhhhcccccchhHHHHHHHHHHHHHH
Confidence 4578999999999976531 122233344677777777543
No 60
>cd04279 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MMP_like sub-family 1. A group of bacterial, archaeal, and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=34.20 E-value=1.7e+02 Score=26.60 Aligned_cols=36 Identities=11% Similarity=0.098 Sum_probs=24.2
Q ss_pred eEEEEEecCCCc---chhHHHHHHHHHHHHHHHHHhCCC
Q 006262 222 VKVHVYCPVGKS---SEGKHALDVAIKSLGIYTEFFSTP 257 (653)
Q Consensus 222 ~~v~v~~~~~~~---~~~~~~l~~~~~~l~~~e~~fg~~ 257 (653)
.++++|..+... .......+.+.+++...++..++.
T Consensus 2 ~~i~~~i~~~~~~~~~~~~~~~~~v~~A~~~W~~~~~l~ 40 (156)
T cd04279 2 SPIRVYIDPTPAPPDSRAQSWLQAVKQAAAEWENVGPLK 40 (156)
T ss_pred CCeEEEEcCCCCccccchHHHHHHHHHHHHHHHHhCCeE
Confidence 467888877543 234556777888888888876543
No 61
>cd04272 ZnMc_salivary_gland_MPs Zinc-dependent metalloprotease, salivary_gland_MPs. Metalloproteases secreted by the salivary glands of arthropods.
Probab=32.64 E-value=1.1e+02 Score=29.74 Aligned_cols=13 Identities=31% Similarity=0.406 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHH
Q 006262 304 MAISTSHEVAHQW 316 (653)
Q Consensus 304 ~~~~iaHElaHqW 316 (653)
.+.++|||++|..
T Consensus 145 ~~~~~AHElGH~l 157 (220)
T cd04272 145 GVYTMTHELAHLL 157 (220)
T ss_pred cHHHHHHHHHHHh
Confidence 4689999999985
No 62
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=31.61 E-value=78 Score=27.87 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=16.6
Q ss_pred CCCcEEEEEeccCccceeEEEEEEE
Q 006262 86 KDDEILVLVFDEPLAVGEGILRIIF 110 (653)
Q Consensus 86 ~~~~~l~i~l~~~l~~g~~~l~i~y 110 (653)
.....+.+.++.+|.+|.|.+.+..
T Consensus 83 ~g~~~~~~~i~~~L~~G~Y~i~v~l 107 (142)
T PF14524_consen 83 GGTYEVTFTIPKPLNPGEYSISVGL 107 (142)
T ss_dssp T-EEEEEEEEE--B-SEEEEEEEEE
T ss_pred CCEEEEEEEEcCccCCCeEEEEEEE
Confidence 3344677778888999999998888
No 63
>PF01421 Reprolysin: Reprolysin (M12B) family zinc metalloprotease This Prosite motif covers only the active site.; InterPro: IPR001590 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12B (adamalysin family, clan (MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The adamalysins are zinc dependent endopeptidases found in snake venom. There are some mammalian proteins such as P78325 from SWISSPROT, and fertilin Q28472 from SWISSPROT. Fertilin and closely related proteins appear to not have some active site residues and may not be active enzymes. CD156 (also called ADAM8 (3.4.24 from EC) or MS2 human) has been implicated in extravasation of leukocytes. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2E3X_A 2W15_A 2W14_A 2W13_A 2W12_A 1ND1_A 3K7L_A 2DW2_A 2DW0_B 2DW1_A ....
Probab=30.43 E-value=72 Score=30.51 Aligned_cols=14 Identities=29% Similarity=0.501 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHH
Q 006262 302 QIMAISTSHEVAHQ 315 (653)
Q Consensus 302 ~~~~~~iaHElaHq 315 (653)
...+.++|||++|.
T Consensus 129 ~~~a~~~AHelGH~ 142 (199)
T PF01421_consen 129 LSFAVIIAHELGHN 142 (199)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 34678999999995
No 64
>PF09836 DUF2063: Uncharacterized protein conserved in bacteria (DUF2063); InterPro: IPR018640 This entry contains proteins that have no known function. ; PDB: 3DEE_A.
Probab=29.41 E-value=31 Score=28.64 Aligned_cols=31 Identities=19% Similarity=0.445 Sum_probs=22.6
Q ss_pred HHHhhCHHHHHHHHHHHHHhcccCCCChHHH
Q 006262 405 LQSYLGEDIFQKSLSLYMKKYAWKNVETEDL 435 (653)
Q Consensus 405 L~~~lG~~~F~~~l~~yl~~~~~~~~~~~df 435 (653)
++.+||++.|....+.|+.++.-.+.+..++
T Consensus 55 ~~~llG~~~f~~la~~y~~~~p~~s~~l~~~ 85 (94)
T PF09836_consen 55 VRALLGEEFFDALARAYIRAHPSRSPDLNDY 85 (94)
T ss_dssp GGGGS-HHHHHHHHHHHHHSGGGG-S-GGGH
T ss_pred HHHHhCHHHHHHHHHHHHHhCCCCCCcHHHH
Confidence 4678899999999999999988666654433
No 65
>PF04597 Ribophorin_I: Ribophorin I; InterPro: IPR007676 Ribophorin I is an essential subunit of oligosaccharyltransferase (OST), which is also known as dolichyl-diphosphooligosaccharide--protein glycosyltransferase, (2.4.1.119 from EC). OST catalyses the transfer of an oligosaccharide from dolichol pyrophosphate to selected asparagine residues of nascent polypeptides as they are translocated into the lumen of the rough endoplasmic reticulum. Ribophorin I and OST48 are thought to be responsible for OST catalytic activity []. Both yeast and mammalian proteins are glycosylated but the sites are not conserved. Glycosylation may contribute towards general solubility but is unlikely to be involved in a specific biochemical function []. Most family members are predicted to have a transmembrane helix at the C terminus of this region.; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0006486 protein glycosylation, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=28.86 E-value=6e+02 Score=27.75 Aligned_cols=83 Identities=13% Similarity=0.108 Sum_probs=43.6
Q ss_pred EEccCCceEEEEEEEEEEEec--ccCEEEE--Eec---CceeEEEEEEecCCcccc---ccceeecCCCcEEEEEeccCc
Q 006262 30 KLDLVACTFSGNVNININIIE--KTNFIVL--NAL---ELNVHEVLFTSSHNQEYR---PSDAIMDKDDEILVLVFDEPL 99 (653)
Q Consensus 30 ~~d~~~~~f~G~v~I~~~~~~--~~~~i~L--~~~---~l~i~~v~~~~~~~~~~~---~~~~~~~~~~~~l~i~l~~~l 99 (653)
++|+.+....=++.|++++.. +.+...+ ... .+..-++........... ...+.-....+...|.|++||
T Consensus 10 ~idl~~~~vk~~~~i~i~N~g~~p~~~y~~~l~~~~~~~ls~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~pl 89 (432)
T PF04597_consen 10 TIDLSKSYVKETIEITIKNIGDEPVSEYYFALPNDEADHLSYVSAKDKDKKKKLKVSKEITEVNSGSEIKYYEITLPKPL 89 (432)
T ss_pred EEEccCcEEEEEEEEEEEECCCCCceEEEEEECchhhccEEEEEEEECCCccccccccccccccCCCCcceEEEECCCCC
Confidence 346666666666777777653 3344333 321 233333333221100001 112222223356999999999
Q ss_pred cce-eEEEEEEEEe
Q 006262 100 AVG-EGILRIIFYG 112 (653)
Q Consensus 100 ~~g-~~~l~i~y~g 112 (653)
.|| +.+|.|.|.-
T Consensus 90 ~~~~~~~l~v~~~~ 103 (432)
T PF04597_consen 90 APGEKVTLTVEYVL 103 (432)
T ss_pred CCCCEEEEEEEEEe
Confidence 999 8888888763
No 66
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=28.85 E-value=62 Score=29.35 Aligned_cols=13 Identities=31% Similarity=0.493 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHH
Q 006262 303 IMAISTSHEVAHQ 315 (653)
Q Consensus 303 ~~~~~iaHElaHq 315 (653)
.+..+|.|||||-
T Consensus 60 f~~~vV~HELaHl 72 (156)
T COG3091 60 FIEQVVPHELAHL 72 (156)
T ss_pred HHHHHHHHHHHHH
Confidence 4678899998873
No 67
>smart00675 DM11 Domains in hypothetical proteins in Drosophila including 2 in CG15241 and CG9329.
Probab=27.53 E-value=4.7e+02 Score=24.32 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=26.1
Q ss_pred EEEEEccCCceEEEEEEEEEEEecccCEEEEEecCcee
Q 006262 27 LYIKLDLVACTFSGNVNININIIEKTNFIVLNALELNV 64 (653)
Q Consensus 27 l~l~~d~~~~~f~G~v~I~~~~~~~~~~i~L~~~~l~i 64 (653)
|++..+.+..+++|.+++.-. .+|++.|.++..-+..
T Consensus 35 l~~~~d~~~i~vsGn~t~~wd-i~P~DrI~~~~~~~~~ 71 (164)
T smart00675 35 LVVDMDPDGLHISGNITVIWD-VQPTDRISARVSVMHF 71 (164)
T ss_pred eEEEEcCCeEEEeeeEEEEEe-cCCCCeEEEEEEEEEe
Confidence 344457778899999999774 4678888887654433
No 68
>PF15641 Tox-MPTase5: Metallopeptidase toxin 5
Probab=26.82 E-value=1.1e+02 Score=24.73 Aligned_cols=20 Identities=20% Similarity=0.484 Sum_probs=12.5
Q ss_pred HHHHHHHHHHH-HHHHHhcCc
Q 006262 301 KQIMAISTSHE-VAHQWFGNL 320 (653)
Q Consensus 301 ~~~~~~~iaHE-laHqWfGnl 320 (653)
...+..+|.|| +-|-||--.
T Consensus 61 ra~lr~~iiheelhhrw~~rg 81 (109)
T PF15641_consen 61 RAELRNTIIHEELHHRWWKRG 81 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 33456677776 667787543
No 69
>PF13402 M60-like: Peptidase M60-like family; PDB: 4FCA_A.
Probab=25.70 E-value=1.1e+02 Score=31.55 Aligned_cols=108 Identities=17% Similarity=0.052 Sum_probs=55.3
Q ss_pred chhHHHHHHHHHHHHHHHHHhCCCCCC--------CCcceeecCCCCccccc-ccccceeecceeeecCCCCCHHHHHHH
Q 006262 234 SEGKHALDVAIKSLGIYTEFFSTPYPL--------PKLDMVAVSEFHAGAME-NFGLIVYRENELLYNEKTSTANRKQIM 304 (653)
Q Consensus 234 ~~~~~~l~~~~~~l~~~e~~fg~~yp~--------~kld~V~~P~~~~game-~~Gli~~~e~~ll~~~~~s~~~~~~~~ 304 (653)
.+.+..++...++++...++.|++... ++..+|.-+..+.|.|- ..+-|.+.... .+.- -.......-
T Consensus 143 ~d~~~ll~~~D~ii~~~~el~Gl~~~~~~~~~~~~~~~r~v~~v~~~~g~m~a~g~~i~~~~~~--~~~~-l~~~~~~~~ 219 (307)
T PF13402_consen 143 EDPEELLRFWDRIIDAEYELAGLDKSSPGPENNPMPNNRFVFDVQISAGYMHASGYPIGFPPNW--MNEL-LNPNPLRKG 219 (307)
T ss_dssp SSSHHHHHHHHHHHHHHHHHTT-BSS--GGGB--S--EEEEEETT----SEEEETTEEEEETT----HHH-H-HHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhCCCcccCCccccCcccceEEEeccccccceeecCCcEEeeCcH--Hhcc-cCHhHcCCC
Confidence 345677788888999999999977732 22367766777667776 33344443320 0000 000001112
Q ss_pred HHHHHHHHHHHHhcCccCccccchhHhhhhHHHHHHHHHHhhhCC
Q 006262 305 AISTSHEVAHQWFGNLVTMEWWTHLWLNEGFATWISYMATDIMFP 349 (653)
Q Consensus 305 ~~~iaHElaHqWfGnlVt~~~w~d~WL~EGfA~y~~~~~~~~~~~ 349 (653)
.--++||+.|+-= ..+=.|.. +-|.-.+.++..+.....+
T Consensus 220 ~WG~~HE~GH~~Q---~~~~~~~g--~~EvTnNi~sl~~~~~~~~ 259 (307)
T PF13402_consen 220 GWGPWHELGHNHQ---QGPWTWSG--MGEVTNNIYSLYVQEKFGN 259 (307)
T ss_dssp -HHHHHHHHHHH----BGGG--TT---TTTTHHHHHHHHHHHTT-
T ss_pred CeeehhhhhhhcC---ccccccCC--CCchhhHHHHHHHHHHHhc
Confidence 3479999999842 22111333 5788888888776666553
No 70
>PF09768 Peptidase_M76: Peptidase M76 family; InterPro: IPR019165 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. Mitochondrial inner membrane protease ATP23 has two roles in the assembly of mitochondrial ATPase. Firstly, it acts as a protease that removes the N-terminal 10 residues of mitochondrial ATPase CF(0) subunit 6 (ATP6) at the intermembrane space side. Secondly, it is involved in the correct assembly of the membrane-embedded ATPase CF(0) particle, probably mediating association of ATP6 with the subunit 9 ring [, ].; GO: 0004222 metalloendopeptidase activity
Probab=24.25 E-value=1.8e+02 Score=27.37 Aligned_cols=25 Identities=16% Similarity=0.379 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHhcCccCccc
Q 006262 301 KQIMAISTSHEVAHQWFGNLVTMEW 325 (653)
Q Consensus 301 ~~~~~~~iaHElaHqWfGnlVt~~~ 325 (653)
+..+..+++|||.|.|=--...++|
T Consensus 68 ~~~l~~~l~HELIHayD~cr~kvD~ 92 (173)
T PF09768_consen 68 QGHLEDTLTHELIHAYDHCRAKVDW 92 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCc
Confidence 4557889999999998433333443
No 71
>KOG2719 consensus Metalloprotease [General function prediction only]
Probab=24.01 E-value=1.1e+02 Score=33.06 Aligned_cols=65 Identities=17% Similarity=0.275 Sum_probs=32.8
Q ss_pred HHHHHHhCCCCCCCCcceeecCCCCcccccc---cccceeecceeeecCCCC--CHHHHHHHHHHHHHHHHHHHh
Q 006262 248 GIYTEFFSTPYPLPKLDMVAVSEFHAGAMEN---FGLIVYRENELLYNEKTS--TANRKQIMAISTSHEVAHQWF 317 (653)
Q Consensus 248 ~~~e~~fg~~yp~~kld~V~~P~~~~game~---~Gli~~~e~~ll~~~~~s--~~~~~~~~~~~iaHElaHqWf 317 (653)
+.+.+-.| +|..|+-++-.... ++-.| .|+-.. ..-.+||.-.. ...+..++..++|||++|-=-
T Consensus 224 e~la~s~g--fp~~k~~vi~~s~r--s~hsNAyfyG~~~~-KRIvIyDtLl~~~~~~~~eel~AVl~HELGHW~~ 293 (428)
T KOG2719|consen 224 ERLADSVG--FPLSKYRVIDGSKR--SSHSNAYFYGLCKN-KRIVIYDTLLLEEEHLNNEELVAVLAHELGHWKL 293 (428)
T ss_pred HHHHHhcC--CCceEEEEEecCCC--CCCCCeeeeecccc-ceEEEehhhhhhhhccccHHHHHHHHHHhhHHHH
Confidence 33334444 88899888874221 12222 233111 11234443210 001235688999999999543
No 72
>PF13688 Reprolysin_5: Metallo-peptidase family M12; PDB: 2FV5_B 3EWJ_A 3KME_A 3L0T_B 1BKC_E 3G42_D 2I47_D 2FV9_B 3LEA_A 1ZXC_B ....
Probab=23.81 E-value=53 Score=31.25 Aligned_cols=15 Identities=33% Similarity=0.401 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHH
Q 006262 302 QIMAISTSHEVAHQW 316 (653)
Q Consensus 302 ~~~~~~iaHElaHqW 316 (653)
.....++||||+|.+
T Consensus 140 ~~~~~~~AHEiGH~l 154 (196)
T PF13688_consen 140 YNGAITFAHEIGHNL 154 (196)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred CceehhhHHhHHHhc
Confidence 345689999999987
No 73
>KOG3607 consensus Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family [Posttranslational modification, protein turnover, chaperones]
Probab=22.08 E-value=2.2e+02 Score=33.24 Aligned_cols=88 Identities=13% Similarity=0.160 Sum_probs=46.2
Q ss_pred EEEEEecCCCcchhHHHHHHHHHHHHHHHHHhCCCCCCCCcceeecCCCC--cccccccc-cce--eecceeeecCCCCC
Q 006262 223 KVHVYCPVGKSSEGKHALDVAIKSLGIYTEFFSTPYPLPKLDMVAVSEFH--AGAMENFG-LIV--YRENELLYNEKTST 297 (653)
Q Consensus 223 ~v~v~~~~~~~~~~~~~l~~~~~~l~~~e~~fg~~yp~~kld~V~~P~~~--~game~~G-li~--~~e~~ll~~~~~s~ 297 (653)
.+.+|+.+......+.+.+.....+.+=..++...-|.+-..++..-.+. ..|+...| +-. ++..-..+.++
T Consensus 242 ~lE~Wt~~dki~~~~~~~~tL~~F~~wr~~~l~~r~~hD~a~L~~~~~~~~~~~G~a~~~~mCs~~~s~gv~~~~~~--- 318 (716)
T KOG3607|consen 242 GLEIWTDGNKIDVSEDLRETLHNFLKWRKSYLTTRLPHDAAHLLSGILFYGKYVGLAYFGGMCSPGHSGGVNKFHSD--- 318 (716)
T ss_pred EEEecCCCCeecccccHHHHHHHHHHHHHhhccccCCCCceEEEEeeeccCceeceeecccccCcccccceeecCcc---
Confidence 46788888877766677777777777766666533454444443321221 12333222 111 12221111111
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006262 298 ANRKQIMAISTSHEVAHQ 315 (653)
Q Consensus 298 ~~~~~~~~~~iaHElaHq 315 (653)
.....+.++||||+|-
T Consensus 319 --~~~~~a~v~AhelgH~ 334 (716)
T KOG3607|consen 319 --ILLAFAVVLAHELGHN 334 (716)
T ss_pred --cchhHHHHHHHHHHhh
Confidence 1234688999999996
No 74
>PF13205 Big_5: Bacterial Ig-like domain
Probab=21.34 E-value=4.7e+02 Score=21.53 Aligned_cols=26 Identities=23% Similarity=0.170 Sum_probs=22.0
Q ss_pred CCCcEEEEEeccCccce-eEEEEEEEE
Q 006262 86 KDDEILVLVFDEPLAVG-EGILRIIFY 111 (653)
Q Consensus 86 ~~~~~l~i~l~~~l~~g-~~~l~i~y~ 111 (653)
..+..+.|.+.++|.+| .|+|.|.-.
T Consensus 59 ~~~~~~~i~p~~~L~~~t~Y~v~i~~~ 85 (107)
T PF13205_consen 59 WDGNTLTITPSQPLKPGTTYTVTIDSG 85 (107)
T ss_pred ccCCEEEEEECCcCCCCCEEEEEECCC
Confidence 55689999999999999 999998544
No 75
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat. The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....
Probab=20.80 E-value=2.2e+02 Score=19.96 Aligned_cols=42 Identities=24% Similarity=0.391 Sum_probs=25.5
Q ss_pred HHHHHHHHHhhhcC-CCHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHH
Q 006262 595 LSYLLLLLDAHRKE-HDSMVLSKLINVCYDVVEIITDAMPDAVNELKDFS 643 (653)
Q Consensus 595 ~~~~l~l~~~l~~E-~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 643 (653)
|..+++++.-..++ .+.. .....+..+|.+. |+....|+.|+
T Consensus 4 Y~~FL~il~~y~~~~~~~~------~v~~~v~~Ll~~h-pdLl~~F~~Fl 46 (47)
T PF02671_consen 4 YNEFLKILNDYKKGRISRS------EVIEEVSELLRGH-PDLLEEFNRFL 46 (47)
T ss_dssp HHHHHHHHHHHHCTCSCHH------HHHHHHHHHTTT--HHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcCCCHH------HHHHHHHHHHccC-HHHHHHHHhhC
Confidence 56777777665553 2322 1334566677764 78888888774
No 76
>PF04293 SpoVR: SpoVR like protein; InterPro: IPR007390 One of the family members P37875 from SWISSPROT is Bacillus subtilis stage V sporulation protein R, which is involved in spore cortex formation []. Little is known about cortex biosynthesis, except that it depends on several sigma E controlled genes, including spoVR [].
Probab=20.54 E-value=2.3e+02 Score=30.72 Aligned_cols=40 Identities=23% Similarity=0.365 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHhcCccCccccchhHhhhhHHHHHHHHHHhhh
Q 006262 302 QIMAISTSHEVAHQWFGNLVTMEWWTHLWLNEGFATWISYMATDIM 347 (653)
Q Consensus 302 ~~~~~~iaHElaHqWfGnlVt~~~w~d~WL~EGfA~y~~~~~~~~~ 347 (653)
++-.-.|..+.|.-.+.-.-| + =||||.|+|.-+.++.++
T Consensus 241 qrdIl~iVR~ea~YF~PQ~qT-K-----IMNEGWAsywH~~im~~l 280 (426)
T PF04293_consen 241 QRDILRIVREEAQYFYPQIQT-K-----IMNEGWASYWHYRIMREL 280 (426)
T ss_pred HHHHHHHHHHHHHHhcchhhh-h-----hhccchHHHHHHHHHhhc
Confidence 333344555555433332222 2 289999999999988776
No 77
>COG3590 PepO Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=20.10 E-value=22 Score=39.25 Aligned_cols=60 Identities=17% Similarity=0.299 Sum_probs=35.5
Q ss_pred cceeeccee---eecCCCCCHHHHHHHHHHHHHHHHHHHhcCccCcc---ccchhHhhhhHHHHHH
Q 006262 281 LIVYRENEL---LYNEKTSTANRKQIMAISTSHEVAHQWFGNLVTME---WWTHLWLNEGFATWIS 340 (653)
Q Consensus 281 li~~~e~~l---l~~~~~s~~~~~~~~~~~iaHElaHqWfGnlVt~~---~w~d~WL~EGfA~y~~ 340 (653)
.|+|....| +|+++.++..+.-.+-.+|+|||.|..=-+.-..+ .-+|.|..|--+.|-+
T Consensus 461 ~IVFPAAILQ~PFfd~ea~~a~NYGgIGaVIgHEI~HgFDdqGakfD~~GnL~dWWT~eD~~aF~~ 526 (654)
T COG3590 461 EIVFPAAILQAPFFDPEADSAANYGGIGAVIGHEIGHGFDDQGAKFDGDGNLNDWWTDEDAAAFKE 526 (654)
T ss_pred eEeeeHHhcCCCCCCCCcchhhcccCccceehhhhcccccCCccccCCCCcHHhhcCHHHHHHHHH
Confidence 455554421 56777777777777889999999997642222111 1233455666665544
No 78
>PF06483 ChiC: Chitinase C; InterPro: IPR009470 This ~170 aa region is found at the C-terminal to the catalytic domain (IPR001223 from INTERPRO) found in members of glycoside hydrolase family 18.
Probab=20.08 E-value=5.1e+02 Score=24.36 Aligned_cols=91 Identities=12% Similarity=0.135 Sum_probs=48.0
Q ss_pred eeeEEEEEEEEccCCceEEEEEEEEEEEecccCEEEEEecCceeEEEEEEec-CCccccccceeecCCCcEEEEEecc--
Q 006262 21 IPSYYDLYIKLDLVACTFSGNVNININIIEKTNFIVLNALELNVHEVLFTSS-HNQEYRPSDAIMDKDDEILVLVFDE-- 97 (653)
Q Consensus 21 ~p~~Y~l~l~~d~~~~~f~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~~~~~-~~~~~~~~~~~~~~~~~~l~i~l~~-- 97 (653)
.|++++|.|+=+ ....+-|=.+|+|.....+..+.=+..+..++-+.-... +...+.. .+.+-+++.|+|+.
T Consensus 52 YPI~Pkl~iTNn-s~~~iPGGt~~~FD~ptSa~~~~kdqSG~g~~vi~sght~~g~NiGG----L~gdfHrvs~tlp~wq 126 (180)
T PF06483_consen 52 YPINPKLTITNN-SGQTIPGGTEFEFDYPTSAPDNAKDQSGFGLKVISSGHTAAGNNIGG----LKGDFHRVSFTLPAWQ 126 (180)
T ss_pred CCcCCcEEEEcC-CCcccCCccEEEEccccCCccccccccCCcEEEEecCCcccCCcccc----cCCceEEEEEECCCcc
Confidence 455555555422 344566667777776544433322333333333221100 0111111 12223467788874
Q ss_pred Cccce-eEEEEEEEEeeecC
Q 006262 98 PLAVG-EGILRIIFYGKLNE 116 (653)
Q Consensus 98 ~l~~g-~~~l~i~y~g~~~~ 116 (653)
.|+|| ++.|.+.|--.++.
T Consensus 127 slapG~s~~~~~~YyLPiSg 146 (180)
T PF06483_consen 127 SLAPGASVELDMVYYLPISG 146 (180)
T ss_pred ccCCCCEEEEeEEEEeccCC
Confidence 79999 99999999877754
Done!