Your job contains 1 sequence.
>006263
MPVNLTPNSISLINGGDVNSKPLVQVMDIKLIGSTQERYRFLISDSVSTQHAMLATQLND
RVKTGQVKKGSVVQLIDYICSTVQNRKIIVVLNMETIILDCEPIGNPKIFSESELTAQKT
IPSNNLPQPVRVNNYSAPNSGTFNLQNSGTFNSQNPGSFSTPNSGTFRAPNAGSIVRSFQ
PTVQPPYQPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNAR
GDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNE
WEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILR
KNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFS
GKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQI
KNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQ
EIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIR
SRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKSFRK
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 006263
(653 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2054577 - symbol:RPA1A "replication protein A ... 2289 2.0e-237 1
UNIPROTKB|Q9AVL8 - symbol:OsRPA70a "Replication protein A... 1899 4.3e-196 1
TAIR|locus:2163553 - symbol:RPA70C species:3702 "Arabidop... 1478 6.0e-172 2
TAIR|locus:2134766 - symbol:AT4G19130 species:3702 "Arabi... 1574 1.2e-161 1
UNIPROTKB|Q65XV7 - symbol:P0016H04.11 "Os05g0111000 prote... 1236 3.3e-147 2
ZFIN|ZDB-GENE-030912-3 - symbol:rpa1 "replication protein... 792 4.3e-92 2
UNIPROTKB|P27694 - symbol:RPA1 "Replication protein A 70 ... 774 8.9e-92 2
MGI|MGI:1915525 - symbol:Rpa1 "replication protein A1" sp... 765 1.7e-90 2
UNIPROTKB|Q0VCV0 - symbol:RPA1 "Replication protein A1, 7... 761 9.0e-90 2
UNIPROTKB|I3LHB2 - symbol:RPA1 "Uncharacterized protein" ... 750 6.3e-89 2
UNIPROTKB|F1RHH4 - symbol:RPA1 "Uncharacterized protein" ... 750 1.0e-88 2
UNIPROTKB|E2R436 - symbol:RPA1 "Uncharacterized protein" ... 735 5.6e-88 2
UNIPROTKB|Q5ZJJ2 - symbol:RPA1 "Replication protein A 70 ... 744 1.2e-87 2
RGD|1307376 - symbol:Rpa1 "replication protein A1" specie... 451 1.8e-84 3
FB|FBgn0010173 - symbol:RpA-70 "Replication Protein A 70"... 704 4.0e-83 2
ASPGD|ASPL0000065893 - symbol:AN7423 species:162425 "Emer... 700 4.0e-83 2
POMBASE|SPBC660.13c - symbol:ssb1 "DNA replication factor... 660 4.0e-81 2
TAIR|locus:2173527 - symbol:RPA70D species:3702 "Arabidop... 726 5.1e-81 2
TAIR|locus:2142808 - symbol:RPA70B "RPA70-kDa subunit B" ... 748 8.3e-81 2
SGD|S000000065 - symbol:RFA1 "Subunit of heterotrimeric R... 726 3.6e-78 2
CGD|CAL0004564 - symbol:RFA1 species:5476 "Candida albica... 675 1.8e-72 2
UNIPROTKB|I3LSJ9 - symbol:I3LSJ9 "Uncharacterized protein... 414 6.1e-62 3
WB|WBGene00017546 - symbol:rpa-1 species:6239 "Caenorhabd... 481 1.3e-49 2
UNIPROTKB|Q19537 - symbol:rpa-1 "Probable replication fac... 481 1.3e-49 2
GENEDB_PFALCIPARUM|PFD0470c - symbol:PFD0470c "replicatio... 468 5.8e-45 2
UNIPROTKB|Q9U0J0 - symbol:PFD0470c "Replication factor a ... 468 5.8e-45 2
DICTYBASE|DDB_G0289513 - symbol:rfa1 "putative replicatio... 282 2.1e-21 1
TAIR|locus:2011521 - symbol:AT1G52950 "AT1G52950" species... 221 7.3e-15 1
UNIPROTKB|I3L2M5 - symbol:RPA1 "Replication protein A 70 ... 158 1.6e-10 1
UNIPROTKB|I3L524 - symbol:RPA1 "Replication protein A 70 ... 156 2.7e-10 1
WB|WBGene00019858 - symbol:R03H10.6 species:6239 "Caenorh... 126 6.8e-05 1
>TAIR|locus:2054577 [details] [associations]
symbol:RPA1A "replication protein A 1A" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IEA] [GO:0006260 "DNA replication"
evidence=IEA;ISS] [GO:0000790 "nuclear chromatin" evidence=IDA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IGI;RCA]
[GO:0007141 "male meiosis I" evidence=IMP] [GO:0009555 "pollen
development" evidence=IMP] [GO:0048232 "male gamete generation"
evidence=IMP] [GO:0051026 "chiasma assembly" evidence=IMP]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=RCA] [GO:0006312 "mitotic recombination"
evidence=RCA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0007062 "sister chromatid
cohesion" evidence=RCA] [GO:0007129 "synapsis" evidence=RCA]
[GO:0007140 "male meiosis" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009560
"embryo sac egg cell differentiation" evidence=RCA] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0009793 "embryo development
ending in seed dormancy" evidence=RCA] [GO:0009845 "seed
germination" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] [GO:0010182 "sugar mediated signaling pathway"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0010332 "response to
gamma radiation" evidence=RCA] [GO:0016444 "somatic cell DNA
recombination" evidence=RCA] [GO:0016567 "protein ubiquitination"
evidence=RCA] [GO:0019915 "lipid storage" evidence=RCA] [GO:0032204
"regulation of telomere maintenance" evidence=RCA] [GO:0032504
"multicellular organism reproduction" evidence=RCA] [GO:0042138
"meiotic DNA double-strand break formation" evidence=RCA]
[GO:0043247 "telomere maintenance in response to DNA damage"
evidence=RCA] [GO:0043687 "post-translational protein modification"
evidence=RCA] [GO:0045132 "meiotic chromosome segregation"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0050826 "response to freezing"
evidence=RCA] InterPro:IPR004365 InterPro:IPR004591
InterPro:IPR007199 Pfam:PF01336 Pfam:PF04057 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0009555 GO:GO:0003677 GO:GO:0006260
GO:GO:0000790 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0007131 GO:GO:0007141 GO:GO:0051026 GO:GO:0048232
InterPro:IPR013955 Pfam:PF08646 eggNOG:COG1599 KO:K07466
TIGRFAMs:TIGR00617 HOGENOM:HOG000162322 OMA:ICQVNRF EMBL:AC006420
HSSP:P27694 UniGene:At.22213 UniGene:At.71077 EMBL:BT005946
EMBL:AK118699 IPI:IPI00523631 PIR:B84478 RefSeq:NP_178690.1
ProteinModelPortal:Q9SKI4 SMR:Q9SKI4 IntAct:Q9SKI4 STRING:Q9SKI4
PaxDb:Q9SKI4 PRIDE:Q9SKI4 EnsemblPlants:AT2G06510.1 GeneID:815209
KEGG:ath:AT2G06510 TAIR:At2g06510 InParanoid:Q9SKI4
PhylomeDB:Q9SKI4 ProtClustDB:CLSN2683265 ArrayExpress:Q9SKI4
Genevestigator:Q9SKI4 Uniprot:Q9SKI4
Length = 640
Score = 2289 (810.8 bits), Expect = 2.0e-237, P = 2.0e-237
Identities = 444/655 (67%), Positives = 534/655 (81%)
Query: 1 MPVNLTPNSISLINGGDVNSKPLVQVMDIKLIGSTQER----YRFLISDSVSTQHAMLAT 56
MPV+LTPN+I+ I+ GDVN KPL+QV++IK+IG +QER YRFLISD VS QHAM+A
Sbjct: 1 MPVSLTPNAITAIHDGDVNLKPLLQVLEIKMIGRSQERSQERYRFLISDGVSAQHAMVAV 60
Query: 57 QLNDRVKTGQVKKGSVVQLIDYICSTVQNRKIIVVLNMETIILDCEPIGNPKIFSESELT 116
QLNDRVK+GQ +KGS+VQLIDYICS V+ RK+IVVLNMETI+ E IGNP IF E++
Sbjct: 61 QLNDRVKSGQFEKGSIVQLIDYICSDVKGRKLIVVLNMETIVQQSETIGNPTIFGETDTE 120
Query: 117 AQKTIP-SNNLPQPVRVNNYSAPN-SGTFNLQNSGTFNSQNPGSFSTPNSGTFRAPNAGS 174
AQKT + N+P P RV ++ P + N N QN + +TP+ FR P S
Sbjct: 121 AQKTFSGTGNIPPPNRVV-FNEPMVQHSVNRAPPRGVNIQNQAN-NTPS---FR-P---S 171
Query: 175 IVRSFXXXXXXXXXXXXNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLR 234
+ S+ ++RNHGPI+KNEAPAR+IPIAALNPYQGRWAIKARVTAKGD+R
Sbjct: 172 VQPSYQPPA--------SYRNHGPIMKNEAPARVIPIAALNPYQGRWAIKARVTAKGDIR 223
Query: 235 RYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNF 294
RYNNA+GDGKVFSFDLLD DGGEIRVTCFNA+VDRFY++ EVG+VYLISKGSLKPAQKNF
Sbjct: 224 RYNNAKGDGKVFSFDLLDYDGGEIRVTCFNALVDRFYDVTEVGKVYLISKGSLKPAQKNF 283
Query: 295 NHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAEXXXXXXXXXXXXXXXP 354
NHLKNEWEIFLE+TSTV+LC +ED SIPKQQFSFR IS+IE+AE P
Sbjct: 284 NHLKNEWEIFLESTSTVELCPDEDGSIPKQQFSFRPISDIENAENNTILDVIGVVTSVNP 343
Query: 355 SVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSG 414
SVPILRKNGMET RRILNLKD SG++VE+TLWG+FCN++G++L+EMVD F PVL++K+G
Sbjct: 344 SVPILRKNGMETHRRILNLKDESGKAVEVTLWGEFCNRDGRQLEEMVDSAFHPVLAIKAG 403
Query: 415 KVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGG-AKNEI 473
KV+DFSGKS+GTI STQLFINPDF EAH+LR WFD GGK+ A+ SISR+ GG ++NEI
Sbjct: 404 KVSDFSGKSVGTISSTQLFINPDFPEAHKLRTWFDYGGKDTASFSISRDTMPGGVSRNEI 463
Query: 474 HKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSG-NR 532
K VSQIK EGLGRS+KPDW+TV+A I+FIK+DSFCYTACPLMIGD+QCNKKVT+SG NR
Sbjct: 464 RKNVSQIKEEGLGRSDKPDWITVKATISFIKTDSFCYTACPLMIGDKQCNKKVTRSGTNR 523
Query: 533 WQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDD 592
W CDRCNQE DECDYRYLLQ QIQD TGLTW+TAFQE+GEEI+GCPAK+LY +KYEL+ +
Sbjct: 524 WLCDRCNQESDECDYRYLLQVQIQDHTGLTWITAFQETGEEIMGCPAKKLYAMKYELEKE 583
Query: 593 VRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLI 647
F EI+R R+F+QY+ +LKIKEE YGDEQRVK+TV++ D+VNY+SES+Y+LDL+
Sbjct: 584 EEFAEIVRDRLFHQYMLKLKIKEESYGDEQRVKMTVVKVDKVNYTSESKYMLDLL 638
>UNIPROTKB|Q9AVL8 [details] [associations]
symbol:OsRPA70a "Replication protein A 70kDa" species:39947
"Oryza sativa Japonica Group" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR004365 InterPro:IPR004591
InterPro:IPR007199 Pfam:PF01336 Pfam:PF04057 GO:GO:0009555
GO:GO:0003677 GO:GO:0006260 GO:GO:0000790 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0007131 GO:GO:0007141
GO:GO:0051026 GO:GO:0048232 InterPro:IPR013955 Pfam:PF08646
TIGRFAMs:TIGR00617 HSSP:P27694 EMBL:AB042415
ProteinModelPortal:Q9AVL8 IntAct:Q9AVL8 STRING:Q9AVL8
KEGG:dosa:Os02t0776800-01 Gramene:Q9AVL8 Uniprot:Q9AVL8
Length = 654
Score = 1899 (673.5 bits), Expect = 4.3e-196, P = 4.3e-196
Identities = 368/659 (55%), Positives = 480/659 (72%)
Query: 5 LTPNSISLINGGDVNSKPLVQVMDIKLI-----GSTQ-ERYRFLISDSVSTQHAMLATQL 58
LTPN ++ GD N KP++Q+++++ + G T+ ER+R ++SD + A+ A QL
Sbjct: 4 LTPNGVAAALAGDTNLKPVLQIVELRGVQVNGAGVTRGERFRAVVSDGTAASSALFAAQL 63
Query: 59 NDRVKTGQVKKGSVVQLIDYICSTVQNRKIIVVLNMETIILDCEPIGNPKIFSESELTAQ 118
+D ++G +++GS+VQL +Y+ + V R+IIV+LN+E ++ +CE IGNP SE+
Sbjct: 64 SDHARSGALRRGSIVQLSEYVINEVGPRRIIVILNLEVLVSECEIIGNPTALSET----- 118
Query: 119 KTIPSNNLPQPVRVNNYS-APNSGTF--NLQNSGTFNSQNPGSFSTP---NSGTFRAPNA 172
+ +P P RV ++ AP G N N+ T S N F NS F A
Sbjct: 119 ----GSPIPNPTRVEQFNGAPQYGLMAGNSSNTTTKPSDNVPLFQNSMAGNSSNF-ATRP 173
Query: 173 GSIVRSFXXXXXXXXXXXXNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGD 232
V F N++NHG I+KNEAPARIIPI+ALNPYQGRWAIKARVTAKGD
Sbjct: 174 SDKVPVFQPTVQPSYRPAPNYKNHGAIMKNEAPARIIPISALNPYQGRWAIKARVTAKGD 233
Query: 233 LRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQK 292
+RRY+NA+GDGKVFSFDLLDSDGGEIRVTCFNA++DRFYE++EVG+VY++S+G+L+PAQK
Sbjct: 234 IRRYHNAKGDGKVFSFDLLDSDGGEIRVTCFNALLDRFYEVVEVGKVYVVSRGNLRPAQK 293
Query: 293 NFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAEXXXXXXXXXXXXXX 352
N+NHL NEWEI LE STVDLC +E+ SIP Q+F FR I+EIE A+
Sbjct: 294 NYNHLNNEWEILLENGSTVDLCPDENSSIPTQRFDFRPINEIEDAQNNAILDIIGVVTSV 353
Query: 353 XPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVK 412
P I RKNGMETQ+R +NLKD SGRSVE+T+WGDFCN+EG +LQ MV+ G FPVL+VK
Sbjct: 354 NPCTTIQRKNGMETQKRTMNLKDMSGRSVEVTMWGDFCNREGSQLQGMVERGIFPVLAVK 413
Query: 413 SGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNE 472
+GKV+DFSGKS+GTI STQ FINPD AEAH LR+WFDSGG++A T SISR+I G ++NE
Sbjct: 414 AGKVSDFSGKSVGTISSTQFFINPDSAEAHSLRQWFDSGGRDAFTQSISRDITPGASRNE 473
Query: 473 IHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGN- 531
I KTV+QIK+EGLG +KPDW+TV+A + F K++SF YTACP MIGDRQCNKKVT+S N
Sbjct: 474 IRKTVAQIKDEGLGMGDKPDWITVKATVIFFKNESFFYTACPNMIGDRQCNKKVTKSTNG 533
Query: 532 RWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQD 591
W CD+C++E +ECDYRYLLQ QIQD +G WVTAFQE+G+E+LGC A EL LK ++
Sbjct: 534 NWTCDKCDREFEECDYRYLLQFQIQDHSGTAWVTAFQEAGQELLGCSATELNALKE--RE 591
Query: 592 DVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKS 650
D RF + + + +F +YL RLK+KEE YGDE++VK T ++ ++V+ S ES++LLDLISKS
Sbjct: 592 DPRFADTMLNCLFQEYLLRLKVKEESYGDERKVKNTAVKVEKVDPSGESKFLLDLISKS 650
>TAIR|locus:2163553 [details] [associations]
symbol:RPA70C species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006260 "DNA replication" evidence=IEA;ISS] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR001878 InterPro:IPR004365
InterPro:IPR004591 InterPro:IPR007199 Pfam:PF01336 Pfam:PF04057
SMART:SM00343 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003677 GO:GO:0006260 GO:GO:0008270 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AB018113 InterPro:IPR013955
Pfam:PF08646 eggNOG:COG1599 KO:K07466 TIGRFAMs:TIGR00617
HOGENOM:HOG000162322 HSSP:P27694 OMA:RWTIKVR IPI:IPI00525234
RefSeq:NP_199353.1 UniGene:At.30014 ProteinModelPortal:Q9FHJ6
SMR:Q9FHJ6 STRING:Q9FHJ6 PaxDb:Q9FHJ6 PRIDE:Q9FHJ6
EnsemblPlants:AT5G45400.1 GeneID:834576 KEGG:ath:AT5G45400
TAIR:At5g45400 InParanoid:Q9FHJ6 PhylomeDB:Q9FHJ6
ProtClustDB:CLSN2687493 Genevestigator:Q9FHJ6 Uniprot:Q9FHJ6
Length = 853
Score = 1478 (525.3 bits), Expect = 6.0e-172, Sum P(2) = 6.0e-172
Identities = 268/456 (58%), Positives = 354/456 (77%)
Query: 195 NHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSD 254
N GP+ +NEAP RI PIAALNPYQGRW IK RVT+K DLRR+NN RG+GK+FSFDLLD+D
Sbjct: 286 NRGPVARNEAPPRINPIAALNPYQGRWTIKVRVTSKADLRRFNNPRGEGKLFSFDLLDAD 345
Query: 255 GGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLC 314
GGEIRVTCFN VD+F++ I VG VYLIS+G+LKPAQKNFNHL N++EI L++ ST+ C
Sbjct: 346 GGEIRVTCFNDAVDQFFDKIVVGNVYLISRGNLKPAQKNFNHLPNDYEIHLDSASTIQPC 405
Query: 315 TEEDDSIPKQQFSFRHISEIESAEXXXXXXXXXXXXXXXPSVPILRKNGMETQRRILNLK 374
E+D +IP+ F FR+I +IE+ E P+V I+RKN E Q+R L LK
Sbjct: 406 -EDDGTIPRYHFHFRNIGDIENMENNSTTDVIGIVSSISPTVAIMRKNLTEVQKRSLQLK 464
Query: 375 DTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFI 434
D SGRSVE+T+WG+FCN EGQKLQ + D G FPVL++K+G++ +F+GK + TI ++Q FI
Sbjct: 465 DMSGRSVEVTMWGNFCNAEGQKLQNLCDSGVFPVLALKAGRIGEFNGKQVSTIGASQFFI 524
Query: 435 NPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWV 494
PDF EA ELR+W++ G+NA SISRE + G + E+ K ++QIK+E LG SEKPDW+
Sbjct: 525 EPDFPEARELRQWYEREGRNAHFTSISREFSGVG-RQEVRKVIAQIKDEKLGTSEKPDWI 583
Query: 495 TVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQA 553
TV A I+F+K ++FCYTACP+M GDR C+KKVT +G+ W+C++C++ +DECDYRY+LQ
Sbjct: 584 TVCATISFMKVENFCYTACPIMNGDRPCSKKVTNNGDGTWRCEKCDKCVDECDYRYILQI 643
Query: 554 QIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKI 613
Q+QD T LTW TAFQE+GEEI+G AK+LY +KYE QD+ +F +IIRS F +Y+F+LKI
Sbjct: 644 QLQDHTDLTWATAFQEAGEEIMGMSAKDLYYVKYENQDEEKFEDIIRSVAFTKYIFKLKI 703
Query: 614 KEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 649
KEE Y DEQRVK TV++A+++NYSS +R++L+ I K
Sbjct: 704 KEETYSDEQRVKATVVKAEKLNYSSNTRFMLEAIDK 739
Score = 215 (80.7 bits), Expect = 6.0e-172, Sum P(2) = 6.0e-172
Identities = 50/130 (38%), Positives = 75/130 (57%)
Query: 1 MPVNLTPNSISLINGGDVNSK----PLVQVMDIKLIGS----TQE---RYRFLISDSVST 49
M V+LT + + G+V S+ P++QV ++KLI S QE RY+FL+SD
Sbjct: 1 MAVSLTEGVVMKMLNGEVTSETDMMPVLQVTELKLIQSKLHQNQESSNRYKFLLSDGTDL 60
Query: 50 QHAMLATQLNDRVKTGQVKKGSVVQLIDYICSTVQNRKIIVVLNMETIILDCEPIGNPKI 109
ML T LN V G ++ GSV++L YIC+ +Q R+I+V++ +E I+ C IGNPK
Sbjct: 61 AAGMLNTSLNSLVNQGTIQLGSVIRLTHYICNLIQTRRIVVIMQLEVIVEKCNIIGNPKE 120
Query: 110 FSESELTAQK 119
S + Q+
Sbjct: 121 PGHSSINPQR 130
>TAIR|locus:2134766 [details] [associations]
symbol:AT4G19130 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=RCA] [GO:0010332 "response to gamma radiation"
evidence=RCA] InterPro:IPR001878 InterPro:IPR004365
InterPro:IPR004591 InterPro:IPR007199 Pfam:PF01336 Pfam:PF04057
PROSITE:PS50158 SMART:SM00343 GO:GO:0005634 EMBL:CP002687
GO:GO:0003677 GO:GO:0006260 GO:GO:0008270 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR013955 Pfam:PF08646
KO:K07466 TIGRFAMs:TIGR00617 OMA:QNKWVIK IPI:IPI00546271
RefSeq:NP_567576.2 UniGene:At.26624 UniGene:At.73929
ProteinModelPortal:F4JSG3 SMR:F4JSG3 PRIDE:F4JSG3
EnsemblPlants:AT4G19130.1 GeneID:827651 KEGG:ath:AT4G19130
Uniprot:F4JSG3
Length = 784
Score = 1574 (559.1 bits), Expect = 1.2e-161, P = 1.2e-161
Identities = 313/647 (48%), Positives = 439/647 (67%)
Query: 22 PLVQVMDIKLIGS----TQERYRFLISDSVSTQHAMLATQLNDRVKTGQVKKGSVVQLID 77
P++QV D+K I + T+ER+R ++SD ML T LN+ VK G ++ GS+V+L
Sbjct: 26 PVLQVTDLKQIMAQQDPTRERFRMVLSDGTYLHQGMLGTDLNNLVKEGTLQPGSIVRLTR 85
Query: 78 YICSTVQNRKIIVVLNMETIILDCEPIGNPKIFSE--SELTAQKTIPSNNLPQP---VR- 131
++ ++ R+I++V +E + + IG+P + + A I N Q +R
Sbjct: 86 FVGDVIKGRRIVIVPQLEVLKQISDIIGHPVPGGKHNDQRGADSGIKFNTTEQQGSGIRQ 145
Query: 132 VNNYSAPNSGT-FNLQNSGTFNSQNPGSFSTPNSGTFRAPNAGSIV--RSFXXXXXXXXX 188
VNN S + Q GT S P S +TP++ + P++G+ V + +
Sbjct: 146 VNNIEPGRSNAAISPQVGGT-GSSVPAS-TTPSTRAYSNPSSGNGVTRQDYARDPPTSYP 203
Query: 189 XXXN-----FRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDG 243
+ N GP+ +NEAP +IIP+ AL+PY GRW IKARVT K L++Y+N RG+G
Sbjct: 204 HQPQPPPPMYANRGPVARNEAPPKIIPVNALSPYSGRWTIKARVTNKAALKQYSNPRGEG 263
Query: 244 KVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEI 303
KVF+FDLLD+DGGEIRVTCFNAV D+FY+ I VG +YLIS+GSL+PAQKNFNHL+N++EI
Sbjct: 264 KVFNFDLLDADGGEIRVTCFNAVADQFYDQIVVGNLYLISRGSLRPAQKNFNHLRNDYEI 323
Query: 304 FLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAEXXXXXXXXXXXXXXXPSVPILRKNG 363
L+ ST+ C EED +IP+ QF FR I +IES E P+V I RKNG
Sbjct: 324 MLDNASTIKQCYEEDAAIPRHQFHFRTIGDIESMENNCIVDVIGIVSSISPTVTITRKNG 383
Query: 364 METQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKS 423
T +R L LKD SGRSVE+T+WGDFCN EGQ+LQ + D G FPVL+VK+G++++F+GK+
Sbjct: 384 TATPKRSLQLKDMSGRSVEVTMWGDFCNAEGQRLQSLCDSGVFPVLAVKAGRISEFNGKT 443
Query: 424 IGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNE 483
+ TI S+QLFI+PDF EA +L+ WF+ GK+ +S+SRE + G K ++ KT+SQIK+E
Sbjct: 444 VSTIGSSQLFIDPDFVEAEKLKNWFEREGKSVPCISLSREFSGSG-KVDVRKTISQIKDE 502
Query: 484 GLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEI 542
LG SEKPDW+TV A I ++K D+FCYTACP+M GDR C+KKVT +G+ W+C++C++ +
Sbjct: 503 KLGTSEKPDWITVSATILYLKFDNFCYTACPIMNGDRPCSKKVTDNGDGTWRCEKCDKSV 562
Query: 543 DECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSR 602
DECDYRY+LQ QIQD T LT VTAFQE+GEEI+G AK+LY +K E +D+ +F +IIR
Sbjct: 563 DECDYRYILQLQIQDHTDLTCVTAFQEAGEEIMGISAKDLYYVKNEHKDEEKFEDIIRKV 622
Query: 603 VFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 649
F +Y F+LK+KEE + DEQRVK TV++ D++NYS+++R +L + K
Sbjct: 623 AFTKYNFKLKVKEETFSDEQRVKATVVKVDKLNYSADTRTMLGAMDK 669
Score = 186 (70.5 bits), Expect = 8.5e-11, P = 8.5e-11
Identities = 58/189 (30%), Positives = 98/189 (51%)
Query: 1 MPVNLTPNSISLINGGDVNSK----PLVQVMDIKLIGS----TQERYRFLISDSVSTQHA 52
M V+LT +I I G+V ++ P++QV D+K I + T+ER+R ++SD
Sbjct: 1 MEVSLTAGAIGKIMNGEVTTEADMIPVLQVTDLKQIMAQQDPTRERFRMVLSDGTYLHQG 60
Query: 53 MLATQLNDRVKTGQVKKGSVVQLIDYICSTVQNRKIIVVLNMETIILDCEPIGNPKIFSE 112
ML T LN+ VK G ++ GS+V+L ++ ++ R+I++V +E + + IG+P +
Sbjct: 61 MLGTDLNNLVKEGTLQPGSIVRLTRFVGDVIKGRRIVIVPQLEVLKQISDIIGHPVPGGK 120
Query: 113 --SELTAQKTIPSNNLPQP---VR-VNNYSAPNSGT-FNLQNSGTFNSQNPGSFSTPNSG 165
+ A I N Q +R VNN S + Q GT S P S +TP++
Sbjct: 121 HNDQRGADSGIKFNTTEQQGSGIRQVNNIEPGRSNAAISPQVGGT-GSSVPAS-TTPSTR 178
Query: 166 TFRAPNAGS 174
+ P++G+
Sbjct: 179 AYSNPSSGN 187
>UNIPROTKB|Q65XV7 [details] [associations]
symbol:P0016H04.11 "Os05g0111000 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001878 InterPro:IPR004365
InterPro:IPR004591 InterPro:IPR007199 Pfam:PF00098 Pfam:PF01336
Pfam:PF04057 PROSITE:PS50158 SMART:SM00343 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0006260 GO:GO:0008270
EMBL:AP008211 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:4.10.60.10 SUPFAM:SSF57756 EMBL:CM000142 InterPro:IPR013955
Pfam:PF08646 eggNOG:COG1599 KO:K07466 TIGRFAMs:TIGR00617
HOGENOM:HOG000162322 EMBL:AC079356 RefSeq:NP_001054445.1
UniGene:Os.53618 IntAct:Q65XV7 EnsemblPlants:LOC_Os05g02040.1
GeneID:4337594 KEGG:osa:4337594 OMA:RWTIKVR ProtClustDB:CLSN2695308
Uniprot:Q65XV7
Length = 951
Score = 1236 (440.2 bits), Expect = 3.3e-147, Sum P(2) = 3.3e-147
Identities = 252/559 (45%), Positives = 351/559 (62%)
Query: 103 PIGNPKIFSESELTAQKTIPSNNLPQPVRVN----NYSAPNSGTFNLQNSGTFNSQNPGS 158
P + S ++AQ T +N + ++N N P S N N+ T + S
Sbjct: 193 PANVSAVGSYGAISAQNTTNANMMQPTSQLNIMNANTMQPTS-QLNTMNANTMQPTSQLS 251
Query: 159 FSTPNSGT-FRAPNAGSIVRSFXXXXXXXXXXXXN-----FRNHGPILKNEAPARIIPIA 212
PN F AP +G + + N GP +N++ RIIPI
Sbjct: 252 SLNPNQNQRFAAPASGGVFGPPGNAYGQPSRPSYQQPPPVYMNRGPASRNDSATRIIPIT 311
Query: 213 ALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYE 272
ALNPYQ +W IKARVTAK D+R ++NAR G VFSFDLLD+ GGEIR C+ D+F+
Sbjct: 312 ALNPYQPKWTIKARVTAKSDIRHWSNARSSGTVFSFDLLDAQGGEIRAQCWKESADKFFG 371
Query: 273 IIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLE-ATSTVDLCTEEDDSIPKQQFSFRHI 331
IEVGRVYLIS+GSLKPAQK +N L +++EI L+ STV++C+++D+SIP+ Q++FR I
Sbjct: 372 QIEVGRVYLISRGSLKPAQKKYNTLNHDYEITLDIGLSTVEVCSDDDNSIPRLQYNFRQI 431
Query: 332 SEIESAEXXXXXXXXXXXXXXXPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCN 391
SE+E+ PS I+RK G ET++R + LKD SGRS+E+TLWG+FC+
Sbjct: 432 SELENMANETIVDLLGVVTSVSPSATIMRKIGTETRKRSIQLKDLSGRSIEVTLWGNFCD 491
Query: 392 KEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSG 451
EGQ+LQ D G P+++ K +V DF+GKS+ TI STQL INPDF E LR+W+ +
Sbjct: 492 AEGQQLQLQCDSGSNPIIAFKGARVGDFNGKSVSTIGSTQLIINPDFPEVERLRQWYMTE 551
Query: 452 GKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYT 511
GK A +S+SRE+ G + + KT++QIK+E LGR EKPDW+TV+A I+ + ++SFCY
Sbjct: 552 GKTAPCISLSREMLNMG-RTDARKTIAQIKDENLGRLEKPDWITVKAAISHVTTESFCYP 610
Query: 512 ACP--LMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQ 568
ACP L +G RQCNKK +G+ W CDRC++ +YRY+L+ QIQD TG T+ +AF
Sbjct: 611 ACPKLLPVG-RQCNKKAINNGDGMWHCDRCDESFQNPEYRYMLRFQIQDHTGSTYASAFD 669
Query: 569 ESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITV 628
E+GE+I G A EL+ ++ QDD +F EII ++ YLF+LK+KEE Y DEQ +K T
Sbjct: 670 EAGEQIFGRKAGELFSIRNVDQDDAQFAEIIEGVRWHLYLFKLKVKEETYNDEQSLKCTA 729
Query: 629 IRADQVNYSSESRYLLDLI 647
++ ++++ S ES LL I
Sbjct: 730 VKVEKLDPSKESNVLLGAI 748
Score = 223 (83.6 bits), Expect = 3.3e-147, Sum P(2) = 3.3e-147
Identities = 57/172 (33%), Positives = 93/172 (54%)
Query: 1 MPVNLTPNSISLIN---GGDVNSKPLVQVMDIKLIGSTQ--------ERYRFLISDSVST 49
M LTP ++ I G +P++QV+D++ + + ER+R ++SD V+T
Sbjct: 1 MEPQLTPGAVQAIAEHPDGTGTIQPVLQVVDVRPVTTKNAPPTPKPAERFRMMLSDGVNT 60
Query: 50 QHAMLATQLNDRVKTGQVKKGSVVQLIDYICSTVQNRKIIVVLNMETIILDCEPIGNPKI 109
Q +MLAT LN VK ++ G+VVQL D++C+T+Q ++II+V+ ++ + DC IGNPK
Sbjct: 61 QQSMLATALNPLVKDATLRPGTVVQLTDFMCNTIQGKRIIIVVKLDVLQNDCIVIGNPKH 120
Query: 110 FSESELTAQKTIPSNNLPQPVRVNNYSAPNSGTFNLQNSGTFNSQNPGSFST 161
+ LT ++ P NL V N + G L S ++ S S+
Sbjct: 121 YEPKSLTKEQD-P--NLQASVAQTNNGTYSGGASMLGPSVAPRAEQAASNSS 169
>ZFIN|ZDB-GENE-030912-3 [details] [associations]
symbol:rpa1 "replication protein A1" species:7955
"Danio rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007507
"heart development" evidence=IMP] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR004365 InterPro:IPR004591
InterPro:IPR007199 Pfam:PF01336 Pfam:PF04057 ZFIN:ZDB-GENE-030912-3
GO:GO:0005634 GO:GO:0007507 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR013955 Pfam:PF08646 eggNOG:COG1599
GeneTree:ENSGT00390000012403 KO:K07466 TIGRFAMs:TIGR00617 CTD:6117
HOGENOM:HOG000162322 HOVERGEN:HBG010502 OrthoDB:EOG4V9TQ8
EMBL:AY648787 EMBL:BC066711 IPI:IPI00481800 RefSeq:NP_956105.2
UniGene:Dr.76790 ProteinModelPortal:Q6NY74 SMR:Q6NY74 STRING:Q6NY74
PRIDE:Q6NY74 Ensembl:ENSDART00000032880 GeneID:327491
KEGG:dre:327491 InParanoid:Q6NY74 OMA:TSTIQPC NextBio:20810051
Bgee:Q6NY74 Uniprot:Q6NY74
Length = 601
Score = 792 (283.9 bits), Expect = 4.3e-92, Sum P(2) = 4.3e-92
Identities = 166/445 (37%), Positives = 261/445 (58%)
Query: 206 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 265
++++PIA+LNPYQ +W I+ARVT K +R ++N+RGDGK+FS +L+D + GEIR T FN
Sbjct: 169 SKVVPIASLNPYQSKWTIRARVTNKSAIRTWSNSRGDGKLFSMELVD-ESGEIRATGFNN 227
Query: 266 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQ 325
VD+F+ +IE G+V+ ISKG+LK A K F+ LKN++E+ L +++ C + +D +P Q
Sbjct: 228 EVDKFFSLIEQGKVFYISKGTLKIANKQFSSLKNDYEMTLNGETSIIPCEDSND-VPMLQ 286
Query: 326 FSFRHISEIESAEXXXXXXXXXXXXXXXPSVPILRKNGMETQRRILNLKDTSGRSVELTL 385
F I+++ES E I+ KN E +R + L D SGR ++LT+
Sbjct: 287 CDFVSIADLESREKDTILDVIGVCKNAEDVARIMTKNSREVSKRNIQLIDMSGRVIQLTM 346
Query: 386 WGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELR 445
WG E D P+L++K +++DF G+S+ T+ S+ + INPD EA++LR
Sbjct: 347 WGSDA--------ETFDGSGQPILAIKGARLSDFGGRSLSTLYSSTVMINPDIPEAYKLR 398
Query: 446 EWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKS 505
W+D G S++ GG N KT++++KNE LG +K D+ + A I +I+
Sbjct: 399 GWYDKEGHALDGQSMTELRGPGGGGNTNWKTLAEVKNEHLGHGDKADYFSCIATIVYIRK 458
Query: 506 DSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWV 564
++ Y ACP + CNKKV Q ++C++C++E + YR +L A I D WV
Sbjct: 459 ENCLYQACP----SKDCNKKVVDQQNGMFRCEKCDKEFPDFKYRLMLSANIADFGDNQWV 514
Query: 565 TAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRV 624
T FQ++ E +LG + L LK ++ F E+ + FN ++FR ++K E Y DE R+
Sbjct: 515 TCFQDTAETLLGQNSSYLGQLKDT--NEAAFDEVFQHANFNTFVFRNRVKLETYNDESRI 572
Query: 625 KITVIRADQVNYSSESRYLLDLISK 649
K+TV+ A V++ S+ L+ I K
Sbjct: 573 KVTVVDAKPVDHREYSKRLIINIRK 597
Score = 145 (56.1 bits), Expect = 4.3e-92, Sum P(2) = 4.3e-92
Identities = 50/180 (27%), Positives = 96/180 (53%)
Query: 1 MPVNLTPNSI-SLINGGDVNSKPLVQVMDIKLI--GSTQERYRFLISDSVSTQHA-MLAT 56
M V L+ +I SL G +VN+ P++Q ++I+ I G+ R+R ++SD + T + ML+T
Sbjct: 1 MTVRLSEGAIESLSKGTEVNN-PILQCVNIRKIDGGNGVSRFRVMMSDGLHTMSSFMLST 59
Query: 57 QLNDRVKTGQVKKGSVVQLIDYICSTVQN-RKIIVVLNMETI-ILDCEP--IGNPKIFSE 112
QLN + Q+ V L + + +++ R+++V+L++E + D P IG+P + E
Sbjct: 60 QLNPMAEQNQLATNCVCVLKRSVTNVLKDGRRVVVILDIEVLKSADQMPGKIGDPTPYVE 119
Query: 113 SELTAQKTIPSNNLPQPVRVNNYSAPNSGTFNLQNSGTFNSQNPGSFSTPNSGTFRAPNA 172
+ A T P+ +P++ N S + T+ ++ +F + + +TP + P A
Sbjct: 120 GQSKAPSTAPAPTA-RPLQPQNGS--DGSTYR-PSAQSFGKKPMAAPNTPGGSSKVVPIA 175
>UNIPROTKB|P27694 [details] [associations]
symbol:RPA1 "Replication protein A 70 kDa DNA-binding
subunit" species:9606 "Homo sapiens" [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0000800 "lateral element" evidence=IEA]
[GO:0001673 "male germ cell nucleus" evidence=IEA] [GO:0001701 "in
utero embryonic development" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0007126 "meiosis" evidence=IEA] [GO:0008284
"positive regulation of cell proliferation" evidence=IEA]
[GO:0030097 "hemopoiesis" evidence=IEA] [GO:0048873 "homeostasis of
number of cells within a tissue" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006261 "DNA-dependent DNA replication"
evidence=TAS] [GO:0006310 "DNA recombination" evidence=TAS]
[GO:0005662 "DNA replication factor A complex" evidence=IPI]
[GO:0016605 "PML body" evidence=IDA] [GO:0000075 "cell cycle
checkpoint" evidence=TAS] [GO:0000082 "G1/S transition of mitotic
cell cycle" evidence=TAS] [GO:0000084 "S phase of mitotic cell
cycle" evidence=TAS] [GO:0000216 "M/G1 transition of mitotic cell
cycle" evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0000718 "nucleotide-excision repair, DNA damage removal"
evidence=TAS] [GO:0000722 "telomere maintenance via recombination"
evidence=TAS] [GO:0000723 "telomere maintenance" evidence=TAS]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=TAS] [GO:0000730 "DNA recombinase assembly"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006260
"DNA replication" evidence=TAS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=TAS] [GO:0006281 "DNA repair"
evidence=TAS] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=TAS] [GO:0006289
"nucleotide-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0006302 "double-strand break repair" evidence=TAS] [GO:0032201
"telomere maintenance via semi-conservative replication"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0015629 "actin cytoskeleton" evidence=IDA] Reactome:REACT_216
InterPro:IPR004365 InterPro:IPR004591 InterPro:IPR007199
Pfam:PF01336 Pfam:PF04057 GO:GO:0007126 GO:GO:0005737 EMBL:CH471108
Reactome:REACT_115566 Reactome:REACT_21300 GO:GO:0046872
GO:GO:0015629 GO:GO:0000082 GO:GO:0016605 GO:GO:0008284
GO:GO:0001701 GO:GO:0003682 Reactome:REACT_111183 GO:GO:0001673
GO:GO:0003697 GO:GO:0048873 GO:GO:0030097 GO:GO:0000794
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0000216
GO:GO:0000084 GO:GO:0000075 GO:GO:0000722 Reactome:REACT_383
GO:GO:0000718 GO:GO:0006283 GO:GO:0006271 GO:GO:0032201
GO:GO:0006297 GO:GO:0005662 InterPro:IPR013955 Pfam:PF08646
PDB:2B3G PDBsum:2B3G GO:GO:0000730 eggNOG:COG1599 KO:K07466
TIGRFAMs:TIGR00617 CTD:6117 HOGENOM:HOG000162322 HOVERGEN:HBG010502
OrthoDB:EOG4V9TQ8 OMA:QNKWVIK EMBL:M63488 EMBL:AK289704
EMBL:AB209732 EMBL:AY599563 EMBL:BC018126 IPI:IPI00020127
PIR:A40457 RefSeq:NP_002936.1 UniGene:Hs.461925 PDB:1EWI PDB:1FGU
PDB:1JMC PDB:1L1O PDB:2B29 PDBsum:1EWI PDBsum:1FGU PDBsum:1JMC
PDBsum:1L1O PDBsum:2B29 DisProt:DP00061 ProteinModelPortal:P27694
SMR:P27694 DIP:DIP-24189N IntAct:P27694 MINT:MINT-91488
STRING:P27694 PhosphoSite:P27694 DMDM:1350579 PaxDb:P27694
PeptideAtlas:P27694 PRIDE:P27694 DNASU:6117 Ensembl:ENST00000254719
GeneID:6117 KEGG:hsa:6117 UCSC:uc002fto.2 GeneCards:GC17P001680
HGNC:HGNC:10289 HPA:CAB004563 HPA:HPA006914 MIM:179835
neXtProt:NX_P27694 PharmGKB:PA34651 InParanoid:P27694
PhylomeDB:P27694 BindingDB:P27694 ChEMBL:CHEMBL1764940 ChiTaRS:RPA1
EvolutionaryTrace:P27694 GenomeRNAi:6117 NextBio:23755 Bgee:P27694
CleanEx:HS_RPA1 Genevestigator:P27694 GermOnline:ENSG00000132383
Uniprot:P27694
Length = 616
Score = 774 (277.5 bits), Expect = 8.9e-92, Sum P(2) = 8.9e-92
Identities = 171/460 (37%), Positives = 262/460 (56%)
Query: 197 GPILKNEA---PARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDS 253
GP L + + ++++PIA+L PYQ +W I ARVT K +R ++N+RG+GK+FS +L+D
Sbjct: 170 GPSLSHTSGGTQSKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVD- 228
Query: 254 DGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDL 313
+ GEIR T FN VD+F+ +IEV +VY SKG+LK A K F +KN++E+ ++V
Sbjct: 229 ESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMP 288
Query: 314 CTEEDDSIPKQQFSFRHISEIESAEXXXXXXXXXXXXXXXPSVPI-LRKNGMETQRRILN 372
C E+D +P QF F I ++E+ + I +R N E +R +
Sbjct: 289 C-EDDHHLPTVQFDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIY 347
Query: 373 LKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQL 432
L DTSG+ V TLWG+ +K Q PVL++K +V+DF G+S+ + S+ +
Sbjct: 348 LMDTSGKVVTATLWGEDADKFDGSRQ--------PVLAIKGARVSDFGGRSLSVLSSSTI 399
Query: 433 FINPDFAEAHELREWFDSGGKNAATVSISREIAAG-GAKNEIHKTVSQIKNEGLGRSEKP 491
NPD EA++LR WFD+ G+ VSIS + G G N KT+ ++K+E LG+ +KP
Sbjct: 400 IANPDIPEAYKLRGWFDAEGQALDGVSISDLKSGGVGGSNTNWKTLYEVKSENLGQGDKP 459
Query: 492 DWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYL 550
D+ + A + +++ ++ Y ACP + CNKKV Q ++C++C+ E YR +
Sbjct: 460 DYFSSVATVVYLRKENCMYQACPT----QDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMI 515
Query: 551 LQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFR 610
L I D WVT FQES E ILG A L LK + ++ F E+ ++ F ++FR
Sbjct: 516 LSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKDK--NEQAFEEVFQNANFRSFIFR 573
Query: 611 LKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKS 650
+++K E Y DE R+K TV+ V+Y R L+ I +S
Sbjct: 574 VRVKVETYNDESRIKATVMDVKPVDYREYGRRLVMSIRRS 613
Score = 160 (61.4 bits), Expect = 8.9e-92, Sum P(2) = 8.9e-92
Identities = 43/140 (30%), Positives = 81/140 (57%)
Query: 11 SLINGGDVNSKPLVQVMDIKLI--GSTQERYRFLISDSVSTQHA-MLATQLNDRVKTGQV 67
+++ GD N KP++QV++I+ I G++ RYR L+SD ++T + MLATQLN V+ Q+
Sbjct: 12 AIMQKGDTNIKPILQVINIRPITTGNSPPRYRLLMSDGLNTLSSFMLATQLNPLVEEEQL 71
Query: 68 KKGSVVQLIDYICSTVQN-RKIIVVLNMETIILDCEP----IGNPKIFSESELTAQKTIP 122
V Q+ +I +T+++ R++++++ +E ++ E IGNP ++E L + P
Sbjct: 72 SSNCVCQIHRFIVNTLKDGRRVVILMELE-VLKSAEAVGVKIGNPVPYNEG-LGQPQVAP 129
Query: 123 SNNLPQPVRVNNYSAPNSGT 142
P ++ P +G+
Sbjct: 130 PAPAASPA-ASSRPQPQNGS 148
>MGI|MGI:1915525 [details] [associations]
symbol:Rpa1 "replication protein A1" species:10090 "Mus
musculus" [GO:0000724 "double-strand break repair via homologous
recombination" evidence=IMP] [GO:0000793 "condensed chromosome"
evidence=IDA] [GO:0000794 "condensed nuclear chromosome"
evidence=IDA] [GO:0000800 "lateral element" evidence=IDA]
[GO:0001673 "male germ cell nucleus" evidence=IDA] [GO:0001701 "in
utero embryonic development" evidence=IMP] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005662 "DNA replication factor A complex"
evidence=ISO] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0007126 "meiosis" evidence=IDA]
[GO:0008284 "positive regulation of cell proliferation"
evidence=IMP] [GO:0016605 "PML body" evidence=ISO] [GO:0030097
"hemopoiesis" evidence=IMP] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0048873 "homeostasis of number of cells within a
tissue" evidence=IMP] [GO:0051276 "chromosome organization"
evidence=IMP] InterPro:IPR004365 InterPro:IPR004591
InterPro:IPR007199 Pfam:PF01336 Pfam:PF04057 MGI:MGI:1915525
GO:GO:0007126 GO:GO:0005654 GO:GO:0046872 GO:GO:0003677
GO:GO:0008284 GO:GO:0006260 GO:GO:0001701 GO:GO:0003682
Reactome:REACT_120463 GO:GO:0001673 GO:GO:0048873 GO:GO:0000724
GO:GO:0030097 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0051276 Reactome:REACT_27235 GO:GO:0000800 InterPro:IPR013955
Pfam:PF08646 eggNOG:COG1599 GeneTree:ENSGT00390000012403 KO:K07466
TIGRFAMs:TIGR00617 CTD:6117 HOGENOM:HOG000162322 HOVERGEN:HBG010502
OrthoDB:EOG4V9TQ8 ChiTaRS:RPA1 EMBL:AK148035 EMBL:AK150785
EMBL:AK151590 EMBL:AK153144 EMBL:AK165316 EMBL:AK165944
EMBL:AK167598 EMBL:AK169599 EMBL:AL603834 EMBL:BC019119
IPI:IPI00124520 RefSeq:NP_001157695.1 RefSeq:NP_080929.1
UniGene:Mm.180734 ProteinModelPortal:Q8VEE4 SMR:Q8VEE4
IntAct:Q8VEE4 STRING:Q8VEE4 PaxDb:Q8VEE4 PRIDE:Q8VEE4
Ensembl:ENSMUST00000092907 GeneID:68275 KEGG:mmu:68275
UCSC:uc007kdi.2 NextBio:326898 Bgee:Q8VEE4 CleanEx:MM_RPA1
Genevestigator:Q8VEE4 GermOnline:ENSMUSG00000000751 Uniprot:Q8VEE4
Length = 623
Score = 765 (274.4 bits), Expect = 1.7e-90, Sum P(2) = 1.7e-90
Identities = 164/448 (36%), Positives = 258/448 (57%)
Query: 206 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 265
++++PIA+L PYQ +W I ARVT K +R ++N+RG+GK+FS +L+D + GEIR T FN
Sbjct: 191 SKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVD-ESGEIRATAFNE 249
Query: 266 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQ 325
VD+F+ +IEV +VY SKG+LK A K F+ +KN++E+ ++V C E+ +P Q
Sbjct: 250 QVDKFFPLIEVNKVYYFSKGALKIANKQFSAVKNDYEMTFNNETSVLPC-EDGHHLPTVQ 308
Query: 326 FSFRHISEIESAEXXXXXXXXXXXXXXXPSVPI-LRKNGMETQRRILNLKDTSGRSVELT 384
F F I ++ES S+ I ++ N E +R + L D SG+ V T
Sbjct: 309 FDFTGIGDLESKAKDALVDIIGICKSYEDSIKITVKSNNREVAKRNIYLMDMSGKVVTTT 368
Query: 385 LWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHEL 444
LWG+ +K Q PV+++K +V+DF G+S+ + S+ + +NPD EA++L
Sbjct: 369 LWGEDADKFDGSRQ--------PVMAIKGARVSDFGGRSLSVLSSSTVIVNPDIPEAYKL 420
Query: 445 REWFDSGGKNAATVSISREIAAG-GAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFI 503
R WFDS G+ VSIS + G G N KT+ + K+E LG+ +K D+ + A + F+
Sbjct: 421 RGWFDSEGQALDGVSISDHRSGGAGGGNTNWKTLHEAKSENLGQGDKADYFSTVAAVVFL 480
Query: 504 KSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLT 562
+ ++ Y ACP + CNKKV Q ++C++C++E YR +L A I D
Sbjct: 481 RKENCMYQACPT----QDCNKKVIDQQNGLYRCEKCDREFPNFKYRMILSANIADFQENQ 536
Query: 563 WVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQ 622
WVT FQES E ILG +Y+ + + +++ F E+ ++ F + FR+++K E Y DE
Sbjct: 537 WVTCFQESAEAILG--QNTMYLGELKEKNEQAFEEVFQNANFRSFTFRIRVKLETYNDES 594
Query: 623 RVKITVIRADQVNYSSESRYLLDLISKS 650
R+K TV+ V++ R L+ I K+
Sbjct: 595 RIKATVMDVKPVDFRDYGRRLIANIRKN 622
Score = 157 (60.3 bits), Expect = 1.7e-90, Sum P(2) = 1.7e-90
Identities = 52/189 (27%), Positives = 98/189 (51%)
Query: 4 NLTPNSIS-LINGGDVNSKPLVQVMDIKLI--GSTQERYRFLISDSVSTQHA-MLATQLN 59
+L+ +I +I + + KP++QV++I+ I G+ RYR L+SD ++T + MLATQLN
Sbjct: 4 HLSEGAIEVMIQQENTSIKPILQVINIRPISTGNRSPRYRLLMSDGLNTLSSFMLATQLN 63
Query: 60 DRVKTGQVKKGSVVQLIDYICSTVQN-RKIIVVLNMETIILDCEP----IGNPKIFSES- 113
V+ GQ+ V Q+ +I +T+++ RK++V++++E ++ E IGNP ++E
Sbjct: 64 TLVEGGQLASNCVCQVHKFIVNTLKDGRKVVVLMDLE-VMKSAEDVGLKIGNPVPYNEGY 122
Query: 114 --ELTAQKTIPSNNLPQPVRVNNYSA----PNSGTFNLQNSGT--FNSQNPGSFSTPNSG 165
+ Q+ +P P A P +G+ + ++ + + P F P
Sbjct: 123 GQQQQQQQQQQQQAVPSPASAATPPASKPQPQNGSLGMGSTAAKAYGASKP--FGKPAGT 180
Query: 166 TFRAPNAGS 174
P+ G+
Sbjct: 181 GLLQPSGGT 189
>UNIPROTKB|Q0VCV0 [details] [associations]
symbol:RPA1 "Replication protein A1, 70kDa" species:9913
"Bos taurus" [GO:0051276 "chromosome organization" evidence=IEA]
[GO:0048873 "homeostasis of number of cells within a tissue"
evidence=IEA] [GO:0030097 "hemopoiesis" evidence=IEA] [GO:0016605
"PML body" evidence=IEA] [GO:0015629 "actin cytoskeleton"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0001673 "male germ cell nucleus" evidence=IEA]
[GO:0000800 "lateral element" evidence=IEA] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR004365
InterPro:IPR004591 InterPro:IPR007199 Pfam:PF01336 Pfam:PF04057
GO:GO:0007126 GO:GO:0005737 GO:GO:0003677 GO:GO:0015629
GO:GO:0016605 GO:GO:0008284 GO:GO:0006260 GO:GO:0001701
GO:GO:0003682 GO:GO:0001673 GO:GO:0048873 GO:GO:0000724
GO:GO:0030097 GO:GO:0000794 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0051276 GO:GO:0005662 InterPro:IPR013955
Pfam:PF08646 eggNOG:COG1599 GeneTree:ENSGT00390000012403 KO:K07466
TIGRFAMs:TIGR00617 CTD:6117 HOGENOM:HOG000162322 HOVERGEN:HBG010502
OrthoDB:EOG4V9TQ8 OMA:QNKWVIK EMBL:DAAA02048667 EMBL:DAAA02048664
EMBL:DAAA02048665 EMBL:DAAA02048666 EMBL:BC119986 IPI:IPI00700452
RefSeq:NP_001068644.1 UniGene:Bt.19931 SMR:Q0VCV0 STRING:Q0VCV0
Ensembl:ENSBTAT00000012812 GeneID:504844 KEGG:bta:504844
InParanoid:Q0VCV0 NextBio:20866858 Uniprot:Q0VCV0
Length = 616
Score = 761 (272.9 bits), Expect = 9.0e-90, Sum P(2) = 9.0e-90
Identities = 162/443 (36%), Positives = 253/443 (57%)
Query: 206 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 265
A+++PIA+L PYQ +W I ARVT K +R ++N+RG+GK+FS +L+D + GEIR T FN
Sbjct: 182 AKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVD-ESGEIRATAFNE 240
Query: 266 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQ 325
D+F+ +I+V +VY SKG+LK A K F +KN++E+ ++V C E+ +P Q
Sbjct: 241 QADKFFPLIDVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPC-EDGHHLPTVQ 299
Query: 326 FSFRHISEIESAEXXXXXXXXXXXXXXXPSVPILRK-NGMETQRRILNLKDTSGRSVELT 384
F F I ++ES I+ K N E +R + L D SG+ V T
Sbjct: 300 FDFTGIGDLESKSKDSLVDIIGICKNYEDVTKIIVKSNNREVSKRNIYLMDMSGKVVNAT 359
Query: 385 LWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHEL 444
LWGD +K Q PV+++K +V+DF G+S+ + S+ + +NPD EA++L
Sbjct: 360 LWGDDADKFDGSRQ--------PVMAIKGARVSDFGGRSLSVLSSSTIIVNPDIPEAYKL 411
Query: 445 REWFDSGGKNAATVSISREIAAGGA--KNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITF 502
R WFDS G+ +SIS ++ +GGA N KT+ ++K+E LG+ +KPD+ + A + +
Sbjct: 412 RGWFDSEGQALDGISIS-DLKSGGAGGSNTNWKTLYEVKSENLGQGDKPDYFSSVATVVY 470
Query: 503 IKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGL 561
++ ++ Y ACP + CNKKV Q ++C++C+ E YR +L I D
Sbjct: 471 LRKENCMYQACPT----QDCNKKVIDQQNGLYRCEKCDSEFPNFKYRMILSVNIADFQEN 526
Query: 562 TWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDE 621
WVT FQES E ILG Y+ + + +++ F E+ ++ F + FR+++K E Y DE
Sbjct: 527 QWVTCFQESAEAILG--QSTAYLGELKEKNEQAFEEVFQNANFRSFTFRIRVKLETYNDE 584
Query: 622 QRVKITVIRADQVNYSSESRYLL 644
R+K TV+ V+Y R L+
Sbjct: 585 SRIKATVVDVKPVDYREYGRRLV 607
Score = 154 (59.3 bits), Expect = 9.0e-90, Sum P(2) = 9.0e-90
Identities = 54/184 (29%), Positives = 98/184 (53%)
Query: 4 NLTPNSISLI-NGGDVNSKPLVQVMDIKLI--GSTQERYRFLISDSVSTQHA-MLATQLN 59
+L+ +I+ I GD + KP++QV++I+ I G++ RYR L+SD ++T + MLATQLN
Sbjct: 4 HLSEGAIAAIMQQGDTSIKPILQVINIRPITTGNSPPRYRLLMSDGLNTLSSFMLATQLN 63
Query: 60 DRVKTGQVKKGSVVQLIDYICSTVQN-RKIIVVLNMETIILDCEP----IGNPKIFSESE 114
V+ ++ + Q+ +I +T+++ R++++++ +E ++ E IGNP ++E
Sbjct: 64 PLVEEERLSSNCICQINRFIVNTLKDGRRVVILMELE-VLKSAEAVGSKIGNPVPYNEGH 122
Query: 115 LTAQKTIPSNNLPQPVRVNNYSAPNSGTFNLQNSGTFNSQNPGSFSTPNSGTFRAPNAGS 174
Q+ + +P PV S P S Q +G+ + S + S TF S
Sbjct: 123 --GQQPV----VPPPVSAT--SPPTSRP--QQQNGSPGMASTASKAFGASKTFGKAGGTS 172
Query: 175 IVRS 178
V S
Sbjct: 173 QVNS 176
>UNIPROTKB|I3LHB2 [details] [associations]
symbol:RPA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006260 "DNA replication" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004365 InterPro:IPR004591 InterPro:IPR007199
Pfam:PF01336 Pfam:PF04057 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR013955 Pfam:PF08646 GeneTree:ENSGT00390000012403
TIGRFAMs:TIGR00617 OMA:ICQVNRF EMBL:CU914290
Ensembl:ENSSSCT00000029329 Uniprot:I3LHB2
Length = 625
Score = 750 (269.1 bits), Expect = 6.3e-89, Sum P(2) = 6.3e-89
Identities = 161/448 (35%), Positives = 254/448 (56%)
Query: 206 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 265
A+++PIA+L PYQ +W I ARVT K +R ++N+RG+GK+FS +L+D + GEIR T FN
Sbjct: 191 AKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVD-ESGEIRATAFNE 249
Query: 266 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQ 325
VD+F+ +I+V +VY SKG+LK A K F +KN++E+ ++V C E+ +P Q
Sbjct: 250 QVDKFFPLIDVNKVYYFSKGTLKIANKQFTAVKNDYEMTFSNETSVMPC-EDGHHLPTVQ 308
Query: 326 FSFRHISEIESAEXXXXXXXXXXXXXXXPSVPI-LRKNGMETQRRILNLKDTSGRSVELT 384
F F I+++E+ I ++ E +R + L D SG+ V T
Sbjct: 309 FDFTGIADLENKSKDSLVDIIGICKNYEDVTKITVKSTNREVSKRNIYLMDMSGKVVNAT 368
Query: 385 LWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHEL 444
LWG+ +K Q PV+++K +V+DF G+S+ + S+ + +NPD EA++L
Sbjct: 369 LWGEDADKFDGSRQ--------PVMAIKGARVSDFGGRSLSILSSSTVIVNPDIPEAYKL 420
Query: 445 REWFDSGGKNAATVSISREIAAG-GAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFI 503
R WFDS G+ VSIS + G G N KT+ ++K+E LG+ +KPD+ + A + ++
Sbjct: 421 RGWFDSEGQALDGVSISDLKSGGIGGSNTNWKTLYEVKSENLGQGDKPDYFSAVATVVYL 480
Query: 504 KSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLT 562
+ ++ Y ACP + CNKKV Q ++C++C+ E YR +L I D
Sbjct: 481 RKENCMYQACPT----QDCNKKVIDQQNGLYRCEKCDSEFPNFKYRMILSVNIADFQENQ 536
Query: 563 WVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQ 622
WVT FQES E ILG Y+ + + +++ F E+ ++ F + FR+++K E Y DE
Sbjct: 537 WVTCFQESAEAILG--QSTAYLGELKEKNEQAFEEVFQNANFRSFTFRIRVKLETYNDES 594
Query: 623 RVKITVIRADQVNYSSESRYLLDLISKS 650
R+K TV+ V+Y R L+ I K+
Sbjct: 595 RIKGTVMDVKPVDYKEYGRRLIMSIRKN 622
Score = 157 (60.3 bits), Expect = 6.3e-89, Sum P(2) = 6.3e-89
Identities = 55/185 (29%), Positives = 100/185 (54%)
Query: 4 NLTPNSISLI-NGGDVNSKPLVQVMDIKLI--GSTQERYRFLISDSVSTQHA-MLATQLN 59
+L+ +I+ I GD + KP++QV++I+ I G+ RYR L+SD ++T + MLATQLN
Sbjct: 4 HLSEGAIAAIMQQGDTSIKPILQVINIRPITTGNNPPRYRLLMSDGLNTLSSFMLATQLN 63
Query: 60 DRVKTGQVKKGSVVQLIDYICSTVQN-RKIIVVLNMETIILDCEP----IGNPKIFSESE 114
V+ ++ + Q+ +I +T+++ R++++++++E ++ E IGNP ++E E
Sbjct: 64 PLVEEERLSSNCICQINRFIVNTLKDGRRVVILMDLE-VLKSAEAVGVKIGNPVPYNE-E 121
Query: 115 LTAQKTIPSNNLPQPVRVNNYSAPNSGTFN-LQNSGTFNSQNPGSFSTPNSGTFRAPNAG 173
+ + QPV SA + T N Q +G+ + S + S F A
Sbjct: 122 FSKWNENKRHG-QQPVVPPPVSAASPPTSNPQQQNGSSGVGSTVSKAYGASKIFGKAGAT 180
Query: 174 SIVRS 178
S+V S
Sbjct: 181 SVVNS 185
>UNIPROTKB|F1RHH4 [details] [associations]
symbol:RPA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006260 "DNA replication" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004365 InterPro:IPR004591 InterPro:IPR007199
Pfam:PF01336 Pfam:PF04057 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR013955 Pfam:PF08646 GeneTree:ENSGT00390000012403
KO:K07466 TIGRFAMs:TIGR00617 CTD:6117 EMBL:CU914290
RefSeq:XP_003131870.1 UniGene:Ssc.11114 Ensembl:ENSSSCT00000019397
GeneID:100525428 KEGG:ssc:100525428 Uniprot:F1RHH4
Length = 616
Score = 750 (269.1 bits), Expect = 1.0e-88, Sum P(2) = 1.0e-88
Identities = 161/448 (35%), Positives = 254/448 (56%)
Query: 206 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 265
A+++PIA+L PYQ +W I ARVT K +R ++N+RG+GK+FS +L+D + GEIR T FN
Sbjct: 182 AKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVD-ESGEIRATAFNE 240
Query: 266 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQ 325
VD+F+ +I+V +VY SKG+LK A K F +KN++E+ ++V C E+ +P Q
Sbjct: 241 QVDKFFPLIDVNKVYYFSKGTLKIANKQFTAVKNDYEMTFSNETSVMPC-EDGHHLPTVQ 299
Query: 326 FSFRHISEIESAEXXXXXXXXXXXXXXXPSVPI-LRKNGMETQRRILNLKDTSGRSVELT 384
F F I+++E+ I ++ E +R + L D SG+ V T
Sbjct: 300 FDFTGIADLENKSKDSLVDIIGICKNYEDVTKITVKSTNREVSKRNIYLMDMSGKVVNAT 359
Query: 385 LWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHEL 444
LWG+ +K Q PV+++K +V+DF G+S+ + S+ + +NPD EA++L
Sbjct: 360 LWGEDADKFDGSRQ--------PVMAIKGARVSDFGGRSLSILSSSTVIVNPDIPEAYKL 411
Query: 445 REWFDSGGKNAATVSISREIAAG-GAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFI 503
R WFDS G+ VSIS + G G N KT+ ++K+E LG+ +KPD+ + A + ++
Sbjct: 412 RGWFDSEGQALDGVSISDLKSGGIGGSNTNWKTLYEVKSENLGQGDKPDYFSAVATVVYL 471
Query: 504 KSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLT 562
+ ++ Y ACP + CNKKV Q ++C++C+ E YR +L I D
Sbjct: 472 RKENCMYQACPT----QDCNKKVIDQQNGLYRCEKCDSEFPNFKYRMILSVNIADFQENQ 527
Query: 563 WVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQ 622
WVT FQES E ILG Y+ + + +++ F E+ ++ F + FR+++K E Y DE
Sbjct: 528 WVTCFQESAEAILG--QSTAYLGELKEKNEQAFEEVFQNANFRSFTFRIRVKLETYNDES 585
Query: 623 RVKITVIRADQVNYSSESRYLLDLISKS 650
R+K TV+ V+Y R L+ I K+
Sbjct: 586 RIKGTVMDVKPVDYKEYGRRLIMSIRKN 613
Score = 155 (59.6 bits), Expect = 1.0e-88, Sum P(2) = 1.0e-88
Identities = 54/184 (29%), Positives = 99/184 (53%)
Query: 4 NLTPNSISLI-NGGDVNSKPLVQVMDIKLI--GSTQERYRFLISDSVSTQHA-MLATQLN 59
+L+ +I+ I GD + KP++QV++I+ I G+ RYR L+SD ++T + MLATQLN
Sbjct: 4 HLSEGAIAAIMQQGDTSIKPILQVINIRPITTGNNPPRYRLLMSDGLNTLSSFMLATQLN 63
Query: 60 DRVKTGQVKKGSVVQLIDYICSTVQN-RKIIVVLNMETIILDCEP----IGNPKIFSESE 114
V+ ++ + Q+ +I +T+++ R++++++++E ++ E IGNP ++E
Sbjct: 64 PLVEEERLSSNCICQINRFIVNTLKDGRRVVILMDLE-VLKSAEAVGVKIGNPVPYNEGH 122
Query: 115 LTAQKTIPSNNLPQPVRVNNYSAPNSGTFNLQNSGTFNSQNPGSFSTPNSGTFRAPNAGS 174
Q+ + +P PV S P S Q +G+ + S + S F A S
Sbjct: 123 --GQQPV----VPPPVSAA--SPPTSNP--QQQNGSSGVGSTVSKAYGASKIFGKAGATS 172
Query: 175 IVRS 178
+V S
Sbjct: 173 VVNS 176
>UNIPROTKB|E2R436 [details] [associations]
symbol:RPA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0051276 "chromosome organization"
evidence=IEA] [GO:0048873 "homeostasis of number of cells within a
tissue" evidence=IEA] [GO:0030097 "hemopoiesis" evidence=IEA]
[GO:0016605 "PML body" evidence=IEA] [GO:0015629 "actin
cytoskeleton" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007126 "meiosis"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0001673 "male germ cell nucleus"
evidence=IEA] [GO:0000800 "lateral element" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004365 InterPro:IPR004591 InterPro:IPR007199
Pfam:PF01336 Pfam:PF04057 GO:GO:0007126 GO:GO:0005737 GO:GO:0003677
GO:GO:0015629 GO:GO:0016605 GO:GO:0008284 GO:GO:0006260
GO:GO:0001701 GO:GO:0003682 GO:GO:0001673 GO:GO:0048873
GO:GO:0000724 GO:GO:0030097 GO:GO:0000794 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0051276 GO:GO:0005662
InterPro:IPR013955 Pfam:PF08646 GeneTree:ENSGT00390000012403
KO:K07466 TIGRFAMs:TIGR00617 OMA:ICQVNRF EMBL:AAEX03006697
RefSeq:XP_003639310.1 ProteinModelPortal:E2R436
Ensembl:ENSCAFT00000030554 GeneID:100855690 KEGG:cfa:100855690
NextBio:20864074 Uniprot:E2R436
Length = 616
Score = 735 (263.8 bits), Expect = 5.6e-88, Sum P(2) = 5.6e-88
Identities = 156/441 (35%), Positives = 249/441 (56%)
Query: 207 RIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAV 266
+++PIA+L PYQ +W I ARVT K +R ++N+RG+GK+FS +L+D + GEIR T FN
Sbjct: 183 KVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVD-ESGEIRATAFNEQ 241
Query: 267 VDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQF 326
VD+F+ +I++ +VY ISKG LK A K F +KN++E+ ++V C E+ +P QF
Sbjct: 242 VDKFFPLIDMNKVYYISKGILKIANKQFTAVKNDYEMTFNNETSVMPC-EDGHHLPTVQF 300
Query: 327 SFRHISEIESAEXXXXXXXXXXXXXXXPSVPI-LRKNGMETQRRILNLKDTSGRSVELTL 385
F I ++ES + I ++ N E +R + L D SG+ V TL
Sbjct: 301 DFTGIGDLESKTKDSLIDIIGICKSYEEATKITVKSNNREVSKRNIYLMDMSGKVVTATL 360
Query: 386 WGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELR 445
WG+ ++ Q PV+++K +V+DF G+S+ + S+ + +NPD EA++LR
Sbjct: 361 WGEDADRFDGSRQ--------PVMAIKGARVSDFGGRSLSVLSSSTIIVNPDIPEAYKLR 412
Query: 446 EWFDSGGKNAATVSISREIAAG-GAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIK 504
WFDS G+ +SIS + G G N KT+ ++K+E LG +K D+ + A + +++
Sbjct: 413 GWFDSEGQALDGISISDLKSGGTGGGNTNWKTLYEVKSENLGHGDKADYFSSVATVVYLR 472
Query: 505 SDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTW 563
++ Y ACP + CNKKV Q ++C++C+ E YR +L I D W
Sbjct: 473 KENCMYQACPT----QDCNKKVIDQQNGLYRCEKCDSEFPSFKYRMILSVNIADFQENQW 528
Query: 564 VTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQR 623
VT FQES E I+G Y+ + + +++ F E+ ++ F + FR+++K E Y DE R
Sbjct: 529 VTCFQESAEAIIG--QNTAYLGELKEKNEQAFEEVFQNANFRSFTFRIRVKLETYNDESR 586
Query: 624 VKITVIRADQVNYSSESRYLL 644
+K TV+ V+Y R L+
Sbjct: 587 IKATVMDVKPVDYREYGRRLI 607
Score = 163 (62.4 bits), Expect = 5.6e-88, Sum P(2) = 5.6e-88
Identities = 54/178 (30%), Positives = 95/178 (53%)
Query: 4 NLTPNSISLI-NGGDVNSKPLVQVMDIKLI--GSTQERYRFLISDSVSTQHA-MLATQLN 59
+L+ +I+ I G+ + KP++QV++I+ I G++ RYR L+SD ++T + MLATQLN
Sbjct: 4 HLSEGAIAAIMQQGETSIKPILQVINIRPITTGNSPPRYRLLMSDGLNTLSSFMLATQLN 63
Query: 60 DRVKTGQVKKGSVVQLIDYICSTVQNRKIIVVLNMETIILDCEP----IGNPKIFSESEL 115
V+ Q+ + Q+ +I +T+++ + +V+L I+ E IGNP ++E
Sbjct: 64 PLVEEEQLSSNCICQINRFIVNTLKDGRRVVILMELNILKSAEAVGLKIGNPVPYNEGH- 122
Query: 116 TAQKTIPSN----NLP--QPVRVNNYSAPN-SGTFNLQNSGTFNSQNPGSFSTPNSGT 166
Q+ +PS N P +P + N SA + + S TF S ++ + GT
Sbjct: 123 GQQQAVPSPVSAANPPANKPQQQNGSSAMGFTASKTYSASKTFGKPGGTSLASSSGGT 180
>UNIPROTKB|Q5ZJJ2 [details] [associations]
symbol:RPA1 "Replication protein A 70 kDa DNA-binding
subunit" species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0000800 "lateral
element" evidence=IEA] [GO:0001673 "male germ cell nucleus"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0007126 "meiosis"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0015629 "actin cytoskeleton"
evidence=IEA] [GO:0016605 "PML body" evidence=IEA] [GO:0030097
"hemopoiesis" evidence=IEA] [GO:0048873 "homeostasis of number of
cells within a tissue" evidence=IEA] [GO:0051276 "chromosome
organization" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006302 "double-strand break repair" evidence=TAS]
InterPro:IPR004365 InterPro:IPR004591 InterPro:IPR007199
Pfam:PF01336 Pfam:PF04057 GO:GO:0007126 GO:GO:0005737 GO:GO:0005654
GO:GO:0046872 GO:GO:0003677 GO:GO:0015629 GO:GO:0016605
GO:GO:0008284 GO:GO:0006260 GO:GO:0003682 GO:GO:0001673
GO:GO:0000724 GO:GO:0000794 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0051276 Reactome:REACT_115612 GO:GO:0005662
InterPro:IPR013955 Pfam:PF08646 eggNOG:COG1599
GeneTree:ENSGT00390000012403 KO:K07466 TIGRFAMs:TIGR00617
EMBL:AJ720442 IPI:IPI00571088 RefSeq:NP_001006221.1
UniGene:Gga.4736 ProteinModelPortal:Q5ZJJ2 SMR:Q5ZJJ2 STRING:Q5ZJJ2
PRIDE:Q5ZJJ2 Ensembl:ENSGALT00000004849 GeneID:417563
KEGG:gga:417563 CTD:6117 HOGENOM:HOG000162322 HOVERGEN:HBG010502
InParanoid:Q5ZJJ2 OMA:ICQVNRF OrthoDB:EOG4V9TQ8 NextBio:20820847
Uniprot:Q5ZJJ2
Length = 614
Score = 744 (267.0 bits), Expect = 1.2e-87, Sum P(2) = 1.2e-87
Identities = 167/450 (37%), Positives = 257/450 (57%)
Query: 206 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 265
++++PIA+LNPYQ +W I ARVT KG +R ++N+RG+GK+FS +L+D + GEIR T FN
Sbjct: 179 SKVVPIASLNPYQSKWTICARVTQKGQIRTWSNSRGEGKLFSIELVD-ESGEIRATAFND 237
Query: 266 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEI-FLEATSTVDLCTEEDDSIPKQ 324
D+F+ +IE+ +VY +KG+LK A K + +KN++EI F TS V C ++ +P
Sbjct: 238 QADKFFPLIELNKVYYFTKGNLKTANKQYTAVKNDYEITFNNETSVVP-C-DDAQHLPSV 295
Query: 325 QFSFRHISEIESAEXXXXXXXXXXXXXXXPSVPILRK-NGMETQRRILNLKDTSGRSVEL 383
QF F IS++E+ I+ K + E +R ++L DTSG+ V
Sbjct: 296 QFDFVSISDLENTPKDSIVDVIGICKSYEDVTKIVVKASNREVSKRNVHLMDTSGKLVTA 355
Query: 384 TLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHE 443
TLWG+ E +K D PV+++K +V+DF G+S+ + S+ + +NPD EA +
Sbjct: 356 TLWGN----EAEKF----DGSRQPVIAIKGARVSDFGGRSLSVLSSSTVVVNPDSPEAFK 407
Query: 444 LREWFDSGGKNAATVSISREIAAGGAK--NEIHKTVSQIKNEGLGRSEKPDWVTVRAFIT 501
LR WFDS G+ SIS ++ G A N KT+ + K+E LG+ +K D+ + I
Sbjct: 408 LRGWFDSEGQLLECASIS-DVRGGSASGVNTNWKTLYEAKSERLGQGDKADYFSCVGTIV 466
Query: 502 FIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTG 560
++ ++ Y ACP + CNKKV Q ++C++C++E YR +L I D
Sbjct: 467 HLRKENCMYQACP----SQDCNKKVIDQQNGLYRCEKCDREFPNFKYRMMLLVTIADSLD 522
Query: 561 LTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGD 620
WVT FQES E ILG A L LK + ++ F E+ ++ FN Y F++++K E Y D
Sbjct: 523 YQWVTCFQESAEFILGQSATFLGELKDK--NEQAFEEVFQNANFNTYEFKIRVKLETYND 580
Query: 621 EQRVKITVIRADQVNYSSESRYLLDLISKS 650
E R+K T + VNY S+ L+ I ++
Sbjct: 581 ESRIKATALDVKPVNYREYSKRLIASIRRN 610
Score = 151 (58.2 bits), Expect = 1.2e-87, Sum P(2) = 1.2e-87
Identities = 49/178 (27%), Positives = 98/178 (55%)
Query: 1 MPVNLTPNSISLINGGDVNSKPLVQVMDIKLI--GSTQERYRFLISDSVSTQHA-MLATQ 57
M V L+ +I+ I G+ KP++QV++ + I G+ RYR L+SD V+T + MLATQ
Sbjct: 1 MSVRLSEGAIAAIMQGENVYKPVLQVINTRAIATGNGPPRYRVLMSDGVNTLSSFMLATQ 60
Query: 58 LNDRVKTGQVKKGSVVQLIDYICSTVQN-RKIIVVLNMETI-ILDCE--PIGNPKIFSES 113
LN V+ ++ + Q+ +I +++++ R+++++++++ + D +GNP ++E
Sbjct: 61 LNPLVEEERLSAHCICQVNRFIVNSLKDGRRVVILMDLDVLKTADMVGGTVGNPVPYNEG 120
Query: 114 ELTAQKTIPSNNL-P-QPVRVN-NYSAPNSGT--FNLQNSGTFNSQNPGSFSTPNSGT 166
+ + + P+ N P +P + + N S S ++ ++ + P S TP GT
Sbjct: 121 QGQQRSSAPTANAAPNKPQQQDGNLSVAGSAAPKYHAPSNQFSKASAPSSVKTPG-GT 177
>RGD|1307376 [details] [associations]
symbol:Rpa1 "replication protein A1" species:10116 "Rattus
norvegicus" [GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA;ISO] [GO:0000793 "condensed chromosome"
evidence=ISO] [GO:0000794 "condensed nuclear chromosome"
evidence=ISO] [GO:0000800 "lateral element" evidence=IEA;ISO]
[GO:0001673 "male germ cell nucleus" evidence=IEA;ISO] [GO:0001701
"in utero embryonic development" evidence=IEA;ISO] [GO:0003682
"chromatin binding" evidence=IEA;ISO] [GO:0003697 "single-stranded
DNA binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005662 "DNA replication factor A complex" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0006260 "DNA
replication" evidence=IC] [GO:0007126 "meiosis" evidence=IEA;ISO]
[GO:0008284 "positive regulation of cell proliferation"
evidence=IEA;ISO] [GO:0015629 "actin cytoskeleton"
evidence=IEA;ISO] [GO:0016605 "PML body" evidence=IEA;ISO]
[GO:0030097 "hemopoiesis" evidence=IEA;ISO] [GO:0048873
"homeostasis of number of cells within a tissue" evidence=IEA;ISO]
[GO:0051276 "chromosome organization" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR004365 InterPro:IPR004591
InterPro:IPR007199 Pfam:PF01336 Pfam:PF04057 RGD:1307376
GO:GO:0007126 GO:GO:0005737 GO:GO:0015629 GO:GO:0016605
GO:GO:0008284 GO:GO:0006260 GO:GO:0001701 GO:GO:0003682
GO:GO:0001673 GO:GO:0003697 GO:GO:0048873 GO:GO:0000724
GO:GO:0030097 GO:GO:0000794 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0051276 GO:GO:0005662 InterPro:IPR013955
Pfam:PF08646 eggNOG:COG1599 GeneTree:ENSGT00390000012403 KO:K07466
TIGRFAMs:TIGR00617 CTD:6117 HOGENOM:HOG000162322 HOVERGEN:HBG010502
OMA:ICQVNRF OrthoDB:EOG4V9TQ8 HSSP:P27694 EMBL:AY325234
IPI:IPI00382200 RefSeq:NP_001041308.1 UniGene:Rn.14841 SMR:Q7TP21
STRING:Q7TP21 Ensembl:ENSRNOT00000004229 GeneID:287524
KEGG:rno:287524 InParanoid:Q7TP21 NextBio:626397
Genevestigator:Q7TP21 Uniprot:Q7TP21
Length = 680
Score = 451 (163.8 bits), Expect = 1.8e-84, Sum P(3) = 1.8e-84
Identities = 96/254 (37%), Positives = 148/254 (58%)
Query: 206 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 265
++++PIA+L PYQ +W I ARVT K +R ++N+RG+GK+FS +L+D + GEIR T FN
Sbjct: 169 SKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVD-ESGEIRATAFNE 227
Query: 266 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQ 325
VD+F+ +IEV +VY SKG+LK A K F+ +KN++E+ ++V C E+ +P Q
Sbjct: 228 QVDKFFPLIEVNKVYYFSKGTLKIANKQFSAVKNDYEMTFNNETSVLPC-EDGHHLPTVQ 286
Query: 326 FSFRHISEIESAEXXXXXXXXXXXXXXXPSVPI-LRKNGMETQRRILNLKDTSGRSVELT 384
F F I ++ES + I ++ N E +R + L D SG+ V T
Sbjct: 287 FDFTGIGDLESKSKDSLVDIIGICKSYEDATKITVKSNNREVAKRNICLMDMSGKVVTAT 346
Query: 385 LWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHEL 444
LWG+ +K Q PV+++K +V+DF G+S+ + S+ + +NPD EA++L
Sbjct: 347 LWGEDADKFDGSRQ--------PVMAIKGARVSDFGGRSLSVLSSSTVLVNPDIPEAYKL 398
Query: 445 REW---FDSGGKNA 455
R W F GG A
Sbjct: 399 RGWHYVFGDGGLKA 412
Score = 304 (112.1 bits), Expect = 1.8e-84, Sum P(3) = 1.8e-84
Identities = 75/213 (35%), Positives = 113/213 (53%)
Query: 447 W-FDSGGKNAATVSISREIAAG-GAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIK 504
W FDS G+ VSIS + G G N KT+ + K+E LG+ +K D+ + A + F++
Sbjct: 471 WGFDSEGQALDGVSISDLRSGGTGGSNTNWKTLYEAKSENLGQGDKADYFSTVATVVFLR 530
Query: 505 SDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTW 563
++ Y ACP + CNKKV Q ++C++C++E YR +L I D W
Sbjct: 531 KENCMYQACPT----QDCNKKVIDQQNGLYRCEKCDREFPNFKYRMILSVNIADFQENQW 586
Query: 564 VTAFQESGEEILGCPAKELYMLKYEL------QDDVRFGEIIRSRVFNQYLFRLKIKEEL 617
VT FQES E ILG L LK ++ ++ F E+ ++ F + FR+++K E
Sbjct: 587 VTCFQESAEAILGQNTVYLGELKEKVGCVFVSMNEQAFEEVFQNANFRSFTFRIRVKLET 646
Query: 618 YGDEQRVKITVIRADQVNYSSESRYLLDLISKS 650
Y DE R+K TVI V+Y S+ L+ I K+
Sbjct: 647 YNDESRIKATVIDVKPVDYRDYSKRLIMNIRKN 679
Score = 164 (62.8 bits), Expect = 1.8e-84, Sum P(3) = 1.8e-84
Identities = 48/169 (28%), Positives = 92/169 (54%)
Query: 16 GDVNSKPLVQVMDIKLI--GSTQERYRFLISDSVSTQHA-MLATQLNDRVKTGQVKKGSV 72
GD + KP++QV++I+ I G++ RYR L+SD ++T + MLATQLN V+ GQ+ V
Sbjct: 4 GDTSIKPVLQVINIRPITTGNSPPRYRLLMSDGLNTLSSFMLATQLNALVEGGQLASNCV 63
Query: 73 VQLIDYICSTVQN-RKIIVVLNMETIILDCE---PIGNPKIFSESELTAQK-TIPSNNLP 127
Q+ +I +T+++ R++++++++E + E IGNP ++E Q + P++
Sbjct: 64 CQVHRFIVNTLKDGRRVVILMDLEVVKSAGEVGVKIGNPVPYNEGHAQQQAVSAPASAAT 123
Query: 128 QPVRVNNYSAPNSGTFNLQNS--GTFNSQNPGSFSTPNSGTFRAPNAGS 174
P + P +G+ + ++ + + P F P P +G+
Sbjct: 124 PPA---SKPQPQNGSLGVGSTVAKAYGASKP--FGKPAGTGLLQPTSGT 167
>FB|FBgn0010173 [details] [associations]
symbol:RpA-70 "Replication Protein A 70" species:7227
"Drosophila melanogaster" [GO:0003697 "single-stranded DNA binding"
evidence=NAS;IDA] [GO:0006261 "DNA-dependent DNA replication"
evidence=NAS;IDA] [GO:0005662 "DNA replication factor A complex"
evidence=NAS;IDA] [GO:0005634 "nucleus" evidence=NAS;IDA]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0048812 "neuron projection morphogenesis" evidence=IMP]
[GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI]
InterPro:IPR004365 InterPro:IPR004591 InterPro:IPR007199
Pfam:PF01336 Pfam:PF04057 EMBL:AE014297 GO:GO:0005875 GO:GO:0007095
GO:GO:0007052 GO:GO:0046872 GO:GO:0006261 GO:GO:0003697
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0005662
InterPro:IPR013955 Pfam:PF08646 eggNOG:COG1599
GeneTree:ENSGT00390000012403 KO:K07466 TIGRFAMs:TIGR00617
EMBL:Z70277 EMBL:AY069331 RefSeq:NP_524274.1 UniGene:Dm.2177
ProteinModelPortal:Q24492 SMR:Q24492 DIP:DIP-22335N IntAct:Q24492
MINT:MINT-747966 STRING:Q24492 PaxDb:Q24492 PRIDE:Q24492
EnsemblMetazoa:FBtr0081867 GeneID:40972 KEGG:dme:Dmel_CG9633
CTD:40972 FlyBase:FBgn0010173 InParanoid:Q24492 OMA:QNKWVIK
OrthoDB:EOG444J1R PhylomeDB:Q24492 GenomeRNAi:40972 NextBio:821535
Bgee:Q24492 GermOnline:CG9633 Uniprot:Q24492
Length = 603
Score = 704 (252.9 bits), Expect = 4.0e-83, Sum P(2) = 4.0e-83
Identities = 158/441 (35%), Positives = 244/441 (55%)
Query: 210 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDR 269
PI++L+PYQ +W IKARVT+K +R ++NARG+GK+FS DL+D + GEIR T F D+
Sbjct: 168 PISSLSPYQNKWVIKARVTSKSGIRTWSNARGEGKLFSMDLMD-ESGEIRATAFKEQCDK 226
Query: 270 FYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTE-EDDSIPKQQFSF 328
FY++I+V VY ISK LKPA K ++ L N +E+ + V LC + +DD IP+ +++
Sbjct: 227 FYDLIQVDSVYYISKCQLKPANKQYSSLNNAYEMTFSGETVVQLCEDTDDDPIPEIKYNL 286
Query: 329 RHISEIESAEXXXXXXXXXXXXXXXPSVP-ILRKNGMETQRRILNLKDTSGRSVELTLWG 387
IS++ E + R E ++R + L D S ++ LTLWG
Sbjct: 287 VPISDVSGMENKAAVDTIGICKEVGELQSFVARTTNKEFKKRDITLVDMSNSAISLTLWG 346
Query: 388 DFC-NKEGQKLQEMVDVGFFPVLSVKSGKVNDFSG-KSIGTIPSTQLFINPDFAEAHELR 445
D N +G +Q PV+ VK ++N+F+G KS+ + + INPD EAH+LR
Sbjct: 347 DDAVNFDGH-VQ--------PVILVKGTRINEFNGGKSLSLGGGSIMKINPDIPEAHKLR 397
Query: 446 EWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKS 505
WFD+GG ++ +S G E T+ + LG +KPD+ +A + +K
Sbjct: 398 GWFDNGGGDSVANMVSARTGGGSFSTE-WMTLKDARARNLGSGDKPDYFQCKAVVHIVKQ 456
Query: 506 DSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWV 564
++ Y ACP CNKKV GN +++C++CN YR L+ I D T WV
Sbjct: 457 ENAFYRACP----QSDCNKKVVDEGNDQFRCEKCNALFPNFKYRLLINMSIGDWTSNRWV 512
Query: 565 TAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRV-FNQYLFRLKIKEELYGDEQR 623
++F E GE++LG ++E+ L++D E I S + F ++F+L+ K E+YGD R
Sbjct: 513 SSFNEVGEQLLGHTSQEV---GEALENDPAKAEQIFSALNFTSHIFKLRCKNEVYGDMTR 569
Query: 624 VKITVIRADQVNYSSESRYLL 644
K+TV +N+ +++LL
Sbjct: 570 NKLTVQSVAPINHKEYNKHLL 590
Score = 148 (57.2 bits), Expect = 4.0e-83, Sum P(2) = 4.0e-83
Identities = 46/160 (28%), Positives = 83/160 (51%)
Query: 4 NLTPNSISLINGGDVNSKPLVQVMDIKLIGST--QERYRFLISDS-VSTQHAMLATQLND 60
+L+ I+ I G+V P++Q++ IK I S ERYR LISD +AMLA+QLN
Sbjct: 5 SLSTGVIARIMHGEVVDAPVLQILAIKKINSAADSERYRILISDGKYFNSYAMLASQLNV 64
Query: 61 RVKTGQVKKGSVVQLIDYICSTV----QNRKIIVVLNMETIILDCE---PIGNPKIF--- 110
G++++ ++VQL Y+ S V ++++++ + + E IG P +
Sbjct: 65 MQHNGELEEFTIVQLDKYVTSLVGKDGAGKRVLIISELTVVNPGAEVKSKIGEPVTYENA 124
Query: 111 SESELTAQKTIPSNNLPQPVRVNNYSAPNSGTFNLQ-NSG 149
++ +L + + SN+ P + +++ N+ N NSG
Sbjct: 125 AKQDLAPKPAVTSNSKPIAKKEPSHNNNNNIVMNSSINSG 164
>ASPGD|ASPL0000065893 [details] [associations]
symbol:AN7423 species:162425 "Emericella nidulans"
[GO:0005829 "cytosol" evidence=IEA] [GO:0005662 "DNA replication
factor A complex" evidence=IEA] [GO:0003697 "single-stranded DNA
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IEA]
[GO:0000723 "telomere maintenance" evidence=IEA] InterPro:IPR004365
InterPro:IPR004591 InterPro:IPR007199 Pfam:PF01336 Pfam:PF04057
GO:GO:0005634 GO:GO:0003677 GO:GO:0006260 EMBL:BN001304
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR013955 Pfam:PF08646 TIGRFAMs:TIGR00617 OMA:QNKWVIK
EnsemblFungi:CADANIAT00000512 Uniprot:C8VB95
Length = 603
Score = 700 (251.5 bits), Expect = 4.0e-83, Sum P(2) = 4.0e-83
Identities = 155/456 (33%), Positives = 246/456 (53%)
Query: 196 HGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDG 255
H ++ APA I PI A++PY +W IKAR T+K ++ ++ GDG +FS +LLD D
Sbjct: 158 HTRPMQGSAPATIYPIEAISPYAHKWTIKARCTSKSPIKTFHGRSGDGTLFSVNLLD-DS 216
Query: 256 GEIRVTCFNAVVDRFYEIIEVGRVYLISKGS-LKPAQKNFNHLKNEWEIFLEATSTVDLC 314
GEIR T FN Y++ + G VY IS ++ A+K F +L N++E+ E + V+
Sbjct: 217 GEIRATGFNEQCSALYDLFQEGEVYYISSPCRVQIAKKQFTNLNNDYELTFERDTLVEKA 276
Query: 315 TEEDDSIPKQQFSFRHISEIESAEXXXXXXXXXXXXXXXPSVPILRKNGMET-QRRILNL 373
E++D +P+ +F+F I +++S E + I+ K + +R L L
Sbjct: 277 EEQND-VPQVRFNFTTIGDLQSVEKDTTIDVIGVLKDVGETTQIVSKTTKKPYDKRELTL 335
Query: 374 KDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLF 433
D +G SV LT+WG + +V + K KV+DF GKS+ + S +
Sbjct: 336 VDNTGFSVRLTIWGTTAMNFAASPESVV--------AFKGVKVSDFGGKSLSLLSSGSVT 387
Query: 434 INPDFAEAHELREWFDSGGKNAATVSISREIAAGGA-KNEIHKTVSQIKNEGLGRSEKPD 492
++PD EAH L+ W+D+ G+N S + + A K + KT++Q++ E LG SE+P
Sbjct: 388 VDPDIEEAHRLKGWYDAQGRNENFASHASSVGTMSATKRDQLKTIAQVREEQLGMSEEPS 447
Query: 493 WVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQ-SGNRWQCDRCNQEIDECDYRYLL 551
+ T+RA + +IK D+ CY AC L G CNKKVT+ +W+C+RC++ +YRY++
Sbjct: 448 YFTLRATVVYIKQDNLCYPAC-LSEG---CNKKVTEVDPGQWRCERCDKTHPRAEYRYIM 503
Query: 552 QAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRL 611
+ D TG ++ F + G +LG A +L L D G +I++ + F
Sbjct: 504 LVNVSDHTGQLYLNCFDDVGRLLLGMSANQLMELPQN--DGKALGNVIQNATCRTWTFGC 561
Query: 612 KIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLI 647
+ K + YGD+QR++ V A VNYS E+ L D+I
Sbjct: 562 RAKIDHYGDQQRIRYQVSYAKPVNYSEEASRLADII 597
Score = 152 (58.6 bits), Expect = 4.0e-83, Sum P(2) = 4.0e-83
Identities = 44/147 (29%), Positives = 76/147 (51%)
Query: 20 SKPLVQVMDIKLI---GSTQERYRFLISDSVSTQHAMLATQLNDRVKTGQVKKGSVVQLI 76
S+P+VQ + +K + + QERYR + SD + MLA Q N V G ++KG V+L
Sbjct: 25 SEPIVQCVQVKPLPPQANNQERYRVVFSDISNYVQTMLAIQANHFVTDGLLRKGCFVRLK 84
Query: 77 DYICSTVQNRKIIVVLNMETI--ILDCEPIGNPKIF---SESELTAQKTIPSNNLPQPVR 131
+ ++V+ +KI++VL++E + + + E +G PK +E E Q T S+N +
Sbjct: 85 QFQANSVKGKKILIVLDLEVLKELGEAEKLGEPKPLESKAEEEEKPQPTTISSNGFYGAK 144
Query: 132 VNNYSAPNSGTFNLQNSGTFNSQNPGS 158
N AP+ + Q++ P +
Sbjct: 145 AQN--APSQISSRAQHTRPMQGSAPAT 169
>POMBASE|SPBC660.13c [details] [associations]
symbol:ssb1 "DNA replication factor A subunit Ssb1"
species:4896 "Schizosaccharomyces pombe" [GO:0000723 "telomere
maintenance" evidence=IGI;IMP] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=ISO] [GO:0000781
"chromosome, telomeric region" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005662 "DNA replication factor A complex"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IMP] [GO:0006269 "DNA replication, synthesis of RNA
primer" evidence=ISO] [GO:0006281 "DNA repair" evidence=IMP]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] InterPro:IPR004365
InterPro:IPR004591 InterPro:IPR007199 Pfam:PF01336 Pfam:PF04057
PomBase:SPBC660.13c GO:GO:0005829 GO:GO:0046872 GO:GO:0003677
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0000724
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0000781
GO:GO:0000723 GO:GO:0006269 GO:GO:0005662 InterPro:IPR013955
Pfam:PF08646 eggNOG:COG1599 KO:K07466 TIGRFAMs:TIGR00617
HOGENOM:HOG000162322 OMA:QNKWVIK EMBL:U59385 EMBL:U75446 PIR:T40625
RefSeq:NP_595092.1 ProteinModelPortal:Q92372 DIP:DIP-29237N
IntAct:Q92372 STRING:Q92372 EnsemblFungi:SPBC660.13c.1
GeneID:2541158 KEGG:spo:SPBC660.13c OrthoDB:EOG4F7RTC
NextBio:20802271 Uniprot:Q92372
Length = 609
Score = 660 (237.4 bits), Expect = 4.0e-81, Sum P(2) = 4.0e-81
Identities = 145/457 (31%), Positives = 241/457 (52%)
Query: 198 PILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGE 257
P N I PI L+PYQ +W I+ARVT K +++ ++N RG+GK+FS +LLD + GE
Sbjct: 169 PAAPNSLSTIIYPIEGLSPYQNKWTIRARVTNKSEVKHWHNQRGEGKLFSVNLLD-ESGE 227
Query: 258 IRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEE 317
IR T FN VD FY+I++ G VY IS+ + A+K + +++NE+E+ E + + E+
Sbjct: 228 IRATGFNDQVDAFYDILQEGSVYYISRCRVNIAKKQYTNVQNEYELMFERDTEIRKA-ED 286
Query: 318 DDSIPKQQFSFRHISEIESAEXXXXXXXXXXXXXXXPSVPIL-RKNGMETQRRILNLKDT 376
++P +FSF + E+ P I R +R + + D
Sbjct: 287 QTAVPVAKFSFVSLQEVGDVAKDAVIDVIGVLQNVGPVQQITSRATSRGFDKRDITIVDQ 346
Query: 377 SGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINP 436
+G + +TLWG K V +L+ K KVNDF G+S+ + S+ + ++P
Sbjct: 347 TGYEMRVTLWG--------KTAIEFSVSEESILAFKGVKVNDFQGRSLSMLTSSTMSVDP 398
Query: 437 DFAEAHELREWFDSGGKN---AATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDW 493
D E+H L+ W+D G+ A IS ++ G E K +++++ E LG SE PD+
Sbjct: 399 DIQESHLLKGWYDGQGRGQEFAKHSVISSTLSTTGRSAE-RKNIAEVQAEHLGMSETPDY 457
Query: 494 VTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQA 553
+++ I +I+ + Y ACP CNKKV G W+C++CN+E D YRY++
Sbjct: 458 FSLKGTIVYIRKKNVSYPACPAA----DCNKKVFDQGGSWRCEKCNKEYDAPQYRYIITI 513
Query: 554 QIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKI 613
+ D TG W+ F + G+ I+ A EL L+ D+ F + + Y+F+ +
Sbjct: 514 AVGDHTGQLWLNVFDDVGKLIMHKTADELNDLQEN--DENAFMNCMAEACYMPYIFQCRA 571
Query: 614 KEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKS 650
K++ + E RV+ TV+ +Q+++ ES+ L++ I +
Sbjct: 572 KQDNFKGEMRVRYTVMSINQMDWKEESKRLINFIESA 608
Score = 173 (66.0 bits), Expect = 4.0e-81, Sum P(2) = 4.0e-81
Identities = 47/150 (31%), Positives = 81/150 (54%)
Query: 1 MPVNLTPNSISLINGGDVNS---KPLVQVMDIKLIGSTQ-----ERYRFLISDSVSTQHA 52
M L+ ++ +IN D +S P++QV+ +K + S +RYR ++SDS++ +
Sbjct: 1 MAERLSVGALRIINTSDASSFPPNPILQVLTVKELNSNPTSGAPKRYRVVLSDSINYAQS 60
Query: 53 MLATQLNDRVKTGQVKKGSVVQLIDYICSTVQNRKIIVVL--NMETIILDCEPIGNPKIF 110
ML+TQLN V +++KG+ VQL + + ++ RKI++VL N+ T + + IGNP
Sbjct: 61 MLSTQLNHLVAENKLQKGAFVQLTQFTVNVMKERKILIVLGLNVLTELGVMDKIGNPAGL 120
Query: 111 SESELTAQKTIPSNNLPQPVRVNNYSAPNS 140
+ Q+ NN P R ++ NS
Sbjct: 121 ETVDALRQQQNEQNNASAP-RTGISTSTNS 149
>TAIR|locus:2173527 [details] [associations]
symbol:RPA70D species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006260 "DNA replication" evidence=IEA;ISS] InterPro:IPR004365
InterPro:IPR004591 InterPro:IPR007199 Pfam:PF01336 Pfam:PF04057
GO:GO:0005634 EMBL:CP002688 GO:GO:0003677 GO:GO:0006260
GO:GO:0004386 EMBL:AB006696 EMBL:AB008269 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR013955 Pfam:PF08646
KO:K07466 OMA:IKARVSY TIGRFAMs:TIGR00617 HOGENOM:HOG000162322
HSSP:P27694 EMBL:BT003950 IPI:IPI00525740 RefSeq:NP_200908.1
UniGene:At.29131 ProteinModelPortal:Q9FME0 SMR:Q9FME0 STRING:Q9FME0
EnsemblPlants:AT5G61000.1 GeneID:836221 KEGG:ath:AT5G61000
TAIR:At5g61000 InParanoid:Q9FME0 PhylomeDB:Q9FME0
ProtClustDB:CLSN2686716 ArrayExpress:Q9FME0 Genevestigator:Q9FME0
Uniprot:Q9FME0
Length = 629
Score = 726 (260.6 bits), Expect = 5.1e-81, Sum P(2) = 5.1e-81
Identities = 161/463 (34%), Positives = 261/463 (56%)
Query: 195 NHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSD 254
N P + R+ P+ +LNPYQG W IK RVT KG +R Y NARG+G VF+ +L D +
Sbjct: 168 NAAPAARMAMTRRVHPLVSLNPYQGNWTIKVRVTNKGVMRNYKNARGEGCVFNVELTDEE 227
Query: 255 GGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLC 314
G +I+ T FN +F++ ++G+VY IS+GSLK A K F ++N++E+ L S V+
Sbjct: 228 GTQIQATMFNDAARKFFDRFQLGKVYYISRGSLKLANKQFKTVQNDYEMTLNENSEVEEA 287
Query: 315 TEEDDSIPKQQFSFRHISEIES-AEXXXXXXXXXXXXXXXPSVPILRKNGMET-QRRILN 372
+ E+ IP+ +F+F I E+ P++ I R+ E +R +
Sbjct: 288 SSEEMFIPETKFNFVPIEELGLYVNQKELIDLIGVVQSVSPTMSIRRRTDNEMIPKRDIT 347
Query: 373 LKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQL 432
L D S ++V ++LW D GQ+L +M D PV+++KS KV DF G S+ TI + +
Sbjct: 348 LADESRKTVVVSLWNDLATGIGQELLDMADQS--PVIAIKSLKVGDFQGVSLSTISRSNV 405
Query: 433 FINPDFAEAHELREWFDSGGKNAATVSISREI---AAGGAKNEIHKTV--SQIKNEGLGR 487
INP+ EA +L+ WFDS GK + SI + A G+++ V S I +
Sbjct: 406 VINPESPEAKKLKSWFDSEGKEISMSSIGSGMSPSAKNGSRSLYTDRVLLSHITSNPSLF 465
Query: 488 SEKPDWVTVRAFITFIKSD-SFCYTACPLMIGDRQCNKKVTQS-GNRWQCDRCNQEIDEC 545
EKP + + RA+I+FIK D + Y AC + CNKKVT++ + + C+ C ++ +EC
Sbjct: 466 EEKPVFFSTRAYISFIKPDQTMWYQAC------KTCNKKVTEALDSGYWCEGCQRKYEEC 519
Query: 546 DYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFN 605
RY++ ++ D +G TW+++F + E+ILGC A EL LK E + + ++ ++
Sbjct: 520 SLRYIMAVKVTDSSGETWISSFNDEAEKILGCSADELNKLKSEEGEVNEYQTKLKEATWS 579
Query: 606 QYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLIS 648
++FR+ + + Y E+R ++TV +++++E+R LL IS
Sbjct: 580 SHVFRVSVTQNEYNGEKRQRVTVKGVAPLDFAAETRLLLQDIS 622
Score = 106 (42.4 bits), Expect = 5.1e-81, Sum P(2) = 5.1e-81
Identities = 30/112 (26%), Positives = 59/112 (52%)
Query: 1 MPVNLTPNSISLI------NGGDVNSKPLVQVMDIKLIGSTQERYRFLISDSVSTQHAML 54
M ++TP++IS + + S+ +VQV+D+K IG+ RY F +D + AM
Sbjct: 1 MQTSVTPDAISTVLSNPSFDSSSDRSEIVVQVVDLKPIGN---RYTFSANDGKTKVKAMF 57
Query: 55 ATQLNDRVKTGQVKKGSVVQLIDYICSTVQNR--KIIVVLNMETI--ILDCE 102
L + +G+++ +++LID+ + + ++ K +V E + +LD E
Sbjct: 58 TASLTPEIISGKIQNLGLIRLIDFTVNDISSKSTKYFLVTKCEAVGSVLDSE 109
Score = 45 (20.9 bits), Expect = 1.4e-74, Sum P(2) = 1.4e-74
Identities = 17/65 (26%), Positives = 36/65 (55%)
Query: 4 NLTPNSISLINGGDVNSKPLVQVMDIKL--IGSTQERYRFLISDSVSTQHAMLATQLNDR 61
+LTP IS G + + L++++D + I S +Y FL++ + ++L +++N
Sbjct: 60 SLTPEIIS----GKIQNLGLIRLIDFTVNDISSKSTKY-FLVTKCEAVG-SVLDSEINLD 113
Query: 62 VKTGQ 66
K+G+
Sbjct: 114 SKSGE 118
Score = 40 (19.1 bits), Expect = 4.7e-74, Sum P(2) = 4.7e-74
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 98 ILDCEPIGNPKIFSESE 114
++D +PIGN FS ++
Sbjct: 32 VVDLKPIGNRYTFSAND 48
>TAIR|locus:2142808 [details] [associations]
symbol:RPA70B "RPA70-kDa subunit B" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IEA] [GO:0006260 "DNA replication"
evidence=ISS;RCA] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0010224 "response to UV-B" evidence=IMP] [GO:0000278 "mitotic
cell cycle" evidence=RCA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=RCA] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] [GO:0006270 "DNA
replication initiation" evidence=RCA] [GO:0006275 "regulation of
DNA replication" evidence=RCA] [GO:0006306 "DNA methylation"
evidence=RCA] [GO:0008283 "cell proliferation" evidence=RCA]
[GO:0009555 "pollen development" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010389
"regulation of G2/M transition of mitotic cell cycle" evidence=RCA]
[GO:0016444 "somatic cell DNA recombination" evidence=RCA]
[GO:0016458 "gene silencing" evidence=RCA] [GO:0016568 "chromatin
modification" evidence=RCA] [GO:0031047 "gene silencing by RNA"
evidence=RCA] [GO:0034968 "histone lysine methylation"
evidence=RCA] [GO:0051567 "histone H3-K9 methylation" evidence=RCA]
[GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR004365 InterPro:IPR004591 InterPro:IPR007199
Pfam:PF01336 Pfam:PF04057 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0010224
EMBL:AL133421 InterPro:IPR013955 Pfam:PF08646 eggNOG:COG1599
KO:K07466 TIGRFAMs:TIGR00617 HOGENOM:HOG000162322 HSSP:P27694
ProtClustDB:CLSN2686716 IPI:IPI00535797 PIR:T45627
RefSeq:NP_196419.1 UniGene:At.54774 ProteinModelPortal:Q9SD82
SMR:Q9SD82 STRING:Q9SD82 EnsemblPlants:AT5G08020.1 GeneID:830696
KEGG:ath:AT5G08020 TAIR:At5g08020 InParanoid:Q9SD82 OMA:VVRISEF
PhylomeDB:Q9SD82 Genevestigator:Q9SD82 Uniprot:Q9SD82
Length = 604
Score = 748 (268.4 bits), Expect = 8.3e-81, Sum P(2) = 8.3e-81
Identities = 166/466 (35%), Positives = 267/466 (57%)
Query: 195 NHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSD 254
N P + R+ P+ +LNPYQG W IK RVT KG +R Y NARG+G VF+ +L D +
Sbjct: 144 NAAPAARMAMTRRVHPLVSLNPYQGSWTIKVRVTNKGVMRTYKNARGEGCVFNVELTDEE 203
Query: 255 GGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLC 314
G +I+ T FNA +FY+ E+G+VY IS+GSLK A K F ++N++E+ L S V+
Sbjct: 204 GTQIQATMFNAAARKFYDRFEMGKVYYISRGSLKLANKQFKTVQNDYEMTLNENSEVEEA 263
Query: 315 TEEDDSIPKQQFSFRHISEIES-AEXXXXXXXXXXXXXXXPSVPILRKNGMET-QRRILN 372
+ E+ P+ +F+F I E+ + P++ I RKN E +R +
Sbjct: 264 SNEEMFTPETKFNFVPIDELGTYVNQKDLIDVIGVVQSVSPTMSIRRKNDNEMIPKRDIT 323
Query: 373 LKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQL 432
L D + ++V ++LW D GQ+L +M D PV+++KS KV F G S+ TI + +
Sbjct: 324 LADETKKTVVVSLWNDLATGIGQELLDMADN--HPVIAIKSLKVGAFQGVSLSTISRSNV 381
Query: 433 FINPDFAEAHELREWFDSGGKNAATVSISREIAAG---GAKNEIHKTV--SQI-KNEGLG 486
INP+ EA +L+ W+D+ GK + +I +++ G+++ V S I N LG
Sbjct: 382 VINPNSPEATKLKSWYDAEGKETSMSAIGSGMSSSANNGSRSMYSDRVFLSHITSNPSLG 441
Query: 487 RSEKPDWVTVRAFITFIKSD-SFCYTACPLMIGDRQCNKKVTQS-GNRWQCDRCNQEIDE 544
EKP + + RA+I+FIK D + Y AC + CNKKVT++ + + C+ C ++ E
Sbjct: 442 E-EKPVFFSTRAYISFIKPDQTMWYRAC------KTCNKKVTEAMDSGYWCESCQKKDQE 494
Query: 545 CDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVF 604
C RY++ ++ D TG TW++AF + E+I+GC A +L LK E + F ++ +
Sbjct: 495 CSLRYIMAVKVSDSTGETWLSAFNDEAEKIIGCTADDLNDLKSEEGEVNEFQTKLKEATW 554
Query: 605 NQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKS 650
+ +LFR+ + ++ Y E+R +ITV +++++E+R LL ISK+
Sbjct: 555 SSHLFRISVSQQEYNSEKRQRITVRGVSPIDFAAETRLLLQDISKN 600
Score = 82 (33.9 bits), Expect = 8.3e-81, Sum P(2) = 8.3e-81
Identities = 23/95 (24%), Positives = 48/95 (50%)
Query: 13 INGGDVNSKPLVQVMDIKLIGSTQERYRFLISDSVSTQHAMLATQLNDRVKTGQVKKGSV 72
++ V + +VQV+D+K G+ RY F +D AML L + +G+++ +
Sbjct: 19 LDSSSVRPEIVVQVVDLKPAGN---RYTFSANDGKMKIKAMLPATLTSDIISGKIQNLGL 75
Query: 73 VQLIDYICSTVQNR---KIIVVLNMETII--LDCE 102
++L++Y + + + K +++ E + LD E
Sbjct: 76 IRLLEYTVNDIPGKSEEKYMLITKCEAVASALDSE 110
Score = 37 (18.1 bits), Expect = 4.6e-76, Sum P(2) = 4.6e-76
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 43 ISDSVSTQHAMLATQLNDRVKTGQVKKGSVVQLID 77
+ +SV TQ + N + + V+ VVQ++D
Sbjct: 1 MENSV-TQDGIATVLANQSLDSSSVRPEIVVQVVD 34
>SGD|S000000065 [details] [associations]
symbol:RFA1 "Subunit of heterotrimeric Replication Protein A
(RPA)" species:4932 "Saccharomyces cerevisiae" [GO:0000781
"chromosome, telomeric region" evidence=IMP] [GO:0000722 "telomere
maintenance via recombination" evidence=IGI] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA;IMP] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0016567 "protein ubiquitination"
evidence=IMP;IPI] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006281 "DNA
repair" evidence=IMP] [GO:0006268 "DNA unwinding involved in
replication" evidence=IDA] [GO:0045184 "establishment of protein
localization" evidence=IPI] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0006312 "mitotic recombination"
evidence=IMP] [GO:0006289 "nucleotide-excision repair"
evidence=IDA] [GO:0007004 "telomere maintenance via telomerase"
evidence=IPI] [GO:0005662 "DNA replication factor A complex"
evidence=IDA] [GO:0000794 "condensed nuclear chromosome"
evidence=IDA] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=IGI] [GO:0030491 "heteroduplex
formation" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR004365 InterPro:IPR004591 InterPro:IPR007199
Pfam:PF01336 Pfam:PF04057 SGD:S000000065 GO:GO:0005737
EMBL:BK006935 GO:GO:0046872 GO:GO:0043565 GO:GO:0016567
GO:GO:0045184 GO:GO:0003690 GO:GO:0003697 GO:GO:0000724
GO:GO:0000794 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0000781 GO:GO:0007131 GO:GO:0007004 GO:GO:0000722
GO:GO:0006289 EMBL:L22015 GO:GO:0006268 GO:GO:0005662
InterPro:IPR013955 Pfam:PF08646 GO:GO:0030491 eggNOG:COG1599
GeneTree:ENSGT00390000012403 KO:K07466 OMA:IKARVSY
TIGRFAMs:TIGR00617 HOGENOM:HOG000162322 OrthoDB:EOG4F7RTC
EMBL:X59748 EMBL:M60262 EMBL:S64901 PIR:S20145 RefSeq:NP_009404.1
PDB:1YNX PDBsum:1YNX ProteinModelPortal:P22336 SMR:P22336
DIP:DIP-2512N IntAct:P22336 MINT:MINT-476157 STRING:P22336
PaxDb:P22336 PeptideAtlas:P22336 EnsemblFungi:YAR007C GeneID:851266
KEGG:sce:YAR007C CYGD:YAR007c EvolutionaryTrace:P22336
NextBio:968234 Genevestigator:P22336 GermOnline:YAR007C
Uniprot:P22336
Length = 621
Score = 726 (260.6 bits), Expect = 3.6e-78, Sum P(2) = 3.6e-78
Identities = 166/490 (33%), Positives = 263/490 (53%)
Query: 169 APNAGSIVRSFXXXXXXXXXXXXNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVT 228
A NAG V F N P + P I I L+PYQ W IKARV+
Sbjct: 149 ASNAG--VPDMLHSNSNLNANERKFANENPNSQKTRP--IFAIEQLSPYQNVWTIKARVS 204
Query: 229 AKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLK 288
KG+++ ++N RGDGK+F+ + LD+ G EIR T FN +F EI++ G+VY +SK L+
Sbjct: 205 YKGEIKTWHNQRGDGKLFNVNFLDTSG-EIRATAFNDFATKFNEILQEGKVYYVSKAKLQ 263
Query: 289 PAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAEXXXXXXXXXX 348
PA+ F +L + +E+ L+ + ++ C +E + +PK F+F + I++ E
Sbjct: 264 PAKPQFTNLTHPYELNLDRDTVIEECFDESN-VPKTHFNFIKLDAIQNQEVNSNVDVLGI 322
Query: 349 XXXXXPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPV 408
P + + G + RR + + D SG S+ + LW Q L + G V
Sbjct: 323 IQTINPHFELTSRAGKKFDRRDITIVDDSGFSISVGLWNQ------QALDFNLPEG--SV 374
Query: 409 LSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGG 468
++K +V DF GKS+ S+ L NP+ EA+ L+ W+DS G+NA +++ +E GG
Sbjct: 375 AAIKGVRVTDFGGKSLSMGFSSTLIPNPEIPEAYALKGWYDSKGRNANFITLKQEPGMGG 434
Query: 469 -AKNEIHK------TVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQ 521
+ + K T+++ + E LGRSEK D+ +V+A I+F+K D+F Y AC +
Sbjct: 435 QSAASLTKFIAQRITIARAQAENLGRSEKGDFFSVKAAISFLKVDNFAYPAC----SNEN 490
Query: 522 CNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAK 580
CNKKV Q W+C++C+ ++RY+L I D+T W+T F + +++LG A
Sbjct: 491 CNKKVLEQPDGTWRCEKCDTNNARPNWRYILTISIIDETNQLWLTLFDDQAKQLLGVDAN 550
Query: 581 ELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSES 640
L LK E D F +I +S N+Y FR++ +E+ Y D+ R++ TV +NY +E+
Sbjct: 551 TLMSLKEE--DPNEFTKITQSIQMNEYDFRIRAREDTYNDQSRIRYTVANLHSLNYRAEA 608
Query: 641 RYLLDLISKS 650
YL D +SK+
Sbjct: 609 DYLADELSKA 618
Score = 79 (32.9 bits), Expect = 3.6e-78, Sum P(2) = 3.6e-78
Identities = 28/140 (20%), Positives = 67/140 (47%)
Query: 33 GSTQERYRFL-ISDSVSTQHAMLATQLNDRVKTGQVKKGSVVQLIDYICSTVQNRK--II 89
G+ R + ISD + A+L Q + ++ ++++G ++++I + V+ RK ++
Sbjct: 39 GANSNRKNLIMISDGIYHMKALLRNQAASKFQSMELQRGDIIRVIIAEPAIVRERKKYVL 98
Query: 90 VVLNMETIILDCEPIGNPKIFSESELTAQ--KTIPSNNLPQPVRV-NNYSAPNSGTFNLQ 146
+V + E + + + F ++ + +T+ ++ V N +A N+G ++
Sbjct: 99 LVDDFELVQSRADMVNQTSTFLDNYFSEHPNETLKDEDITDSGNVANQTNASNAGVPDML 158
Query: 147 NSGTFNSQNPGSFST--PNS 164
+S + + N F+ PNS
Sbjct: 159 HSNSNLNANERKFANENPNS 178
>CGD|CAL0004564 [details] [associations]
symbol:RFA1 species:5476 "Candida albicans" [GO:0000781
"chromosome, telomeric region" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0000794 "condensed nuclear chromosome"
evidence=IEA] [GO:0005662 "DNA replication factor A complex"
evidence=IEA] [GO:0000722 "telomere maintenance via recombination"
evidence=IEA] [GO:0045184 "establishment of protein localization"
evidence=IEA] [GO:0016567 "protein ubiquitination" evidence=IEA]
[GO:0006268 "DNA unwinding involved in replication" evidence=IEA]
[GO:0006289 "nucleotide-excision repair" evidence=IEA] [GO:0007131
"reciprocal meiotic recombination" evidence=IEA] [GO:0030491
"heteroduplex formation" evidence=IEA] [GO:0007004 "telomere
maintenance via telomerase" evidence=IEA] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=IEA] InterPro:IPR004365 InterPro:IPR004591
InterPro:IPR007199 Pfam:PF01336 Pfam:PF04057 CGD:CAL0004564
GO:GO:0005634 GO:GO:0003677 GO:GO:0006260 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AACQ01000031
EMBL:AACQ01000030 InterPro:IPR013955 Pfam:PF08646 eggNOG:COG1599
KO:K07466 TIGRFAMs:TIGR00617 HOGENOM:HOG000162322
RefSeq:XP_719539.1 RefSeq:XP_719663.1 ProteinModelPortal:Q5ACX4
STRING:Q5ACX4 GeneID:3638744 GeneID:3638823 KEGG:cal:CaO19.2093
KEGG:cal:CaO19.9640 Uniprot:Q5ACX4
Length = 624
Score = 675 (242.7 bits), Expect = 1.8e-72, Sum P(2) = 1.8e-72
Identities = 144/449 (32%), Positives = 253/449 (56%)
Query: 207 RIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAV 266
++ PI ++PYQ W IKARV+ KGDLR ++N++G+GKVF F+LLD + EI+ + FN
Sbjct: 180 KVSPIETISPYQNNWTIKARVSYKGDLRTWSNSKGEGKVFGFNLLD-ESDEIKASAFNET 238
Query: 267 VDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQF 326
+R ++++E G+VY ISK + A+K FN L + +E+ + + + C +E D +PK F
Sbjct: 239 AERAHKLLEEGKVYYISKARVAAARKKFNTLSHPYELTFDKDTEITECFDESD-VPKLNF 297
Query: 327 SFRHISEIESAEXXXXXXXXXXXXXXXPSVPILRKN-GMETQRRILNLKDTSGRSVELTL 385
+F + ++++ E P I K+ G RR + + D +G +EL L
Sbjct: 298 NFVKLDQVQNLEANAIIDVLGALKTVFPPFQITAKSTGKVFDRRNILVVDETGFGIELGL 357
Query: 386 WGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELR 445
W N ++ G V++VK KV+D+ G+++ + + NP E+ +L+
Sbjct: 358 W----NNTATDFN--IEEG--TVVAVKGCKVSDYDGRTLSLTQAGSIIPNPGTPESFKLK 409
Query: 446 EWFDSGGKNAATVSISREIA-AGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIK 504
W+D+ G + + S+ + A +GG K +++Q E G +EKPD+ +++A +TF K
Sbjct: 410 GWYDNIGIHESFKSLKIDNAGSGGDKISQRISINQALEEHSGSTEKPDYFSIKASVTFCK 469
Query: 505 SDSFCYTACPLMIGDRQ-------CNKKVTQSGN--RWQCDRCNQEIDECDYRYLLQAQI 555
++F Y ACP ++ + CNKK+ N W+C+RC + +E +RY+L +
Sbjct: 470 PENFAYPACPNLVQNADATRPAQVCNKKLVFQDNDGTWRCERCAKTYEEPTWRYVLSCSV 529
Query: 556 QDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKE 615
D TG WVT F + E++LG A EL + K E + +V +I+ + +F ++ R+K K+
Sbjct: 530 TDSTGHMWVTLFNDQAEKLLGIDATEL-VKKKEQKSEVA-NQIMNNTLFKEFSLRVKAKQ 587
Query: 616 ELYGDEQRVKITVIRADQVNYSSESRYLL 644
E Y DE + + + ++++Y+SES++L+
Sbjct: 588 ETYNDELKTRYSAAGINELDYASESQFLI 616
Score = 76 (31.8 bits), Expect = 1.8e-72, Sum P(2) = 1.8e-72
Identities = 36/156 (23%), Positives = 70/156 (44%)
Query: 15 GGDVNSKPLV-QVMDIKLIG---STQERYRFLISDSVSTQHAMLATQLNDRVKTGQVKKG 70
G D P++ Q+ +IK S +++R L++D V + H ++ ++ +K ++
Sbjct: 19 GHDSVQIPMILQITNIKAFDVSPSDSKKFRILVNDGVYSTHGLIDESCSEYIKNNNCQRY 78
Query: 71 SVVQLIDY-ICSTVQNRKIIVVLNMETIILDCEPIGNPKI-----F----SESELTAQKT 120
++VQ+ + I +T ++ V+ N E + E N I F E+ LT K
Sbjct: 79 AIVQVNAFSIFAT--SKHFFVIKNFEVLAPTSEKSPNNIIPIDTYFLEHPEENYLTVMKK 136
Query: 121 IPSNNLPQPVR-VNNYSAPNSGTFNLQNSGTFNSQN 155
S + PV V A ++ +F + G +Q+
Sbjct: 137 SESRDRESPVPGVTPPLAQSTNSFKSEVGGGVAAQS 172
>UNIPROTKB|I3LSJ9 [details] [associations]
symbol:I3LSJ9 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006260 "DNA replication" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004365 InterPro:IPR004591 InterPro:IPR007199
Pfam:PF01336 Pfam:PF04057 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR013955 Pfam:PF08646 GeneTree:ENSGT00390000012403
TIGRFAMs:TIGR00617 Ensembl:ENSSSCT00000030272 OMA:ETTIEEC
Uniprot:I3LSJ9
Length = 550
Score = 414 (150.8 bits), Expect = 6.1e-62, Sum P(3) = 6.1e-62
Identities = 103/363 (28%), Positives = 179/363 (49%)
Query: 149 GTFNSQNPGSFSTPNSGTFRAPNAGSIVRSFXXXXXXXXXXXXNFRNHGPILKNEAPARI 208
G F + P S +G+ + ++ +++ + N A++
Sbjct: 124 GRFRASPPTSNPQQQNGSSGVAGSSTVSKAYGASKIFGKAGATSVVNSS----GGTQAKV 179
Query: 209 IPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVD 268
+PIA+L PYQ +W I ARVT K +R ++N+RG+GK+FS +L+D + GEIR T FN VD
Sbjct: 180 VPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVD-ESGEIRATAFNEQVD 238
Query: 269 RFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSF 328
+F+ +I+V VY SKG+LK A K F +KN++E+ ++V C E+ +P QF F
Sbjct: 239 KFFPLIDV--VYYFSKGTLKIANKQFTAVKNDYEMTFSNETSVMPC-EDGHHLPTVQFDF 295
Query: 329 RHISEIESAEXXXXXXXXXXXXXXXPSVPI-LRKNGMETQRRILNLKDTSGRSVELTLWG 387
I+++E+ I ++ E +R + L D SG+ V TLWG
Sbjct: 296 TGIADLENKSKDSLVDIIGICKNYEDVTKITVKSTNREVSKRNIYLMDMSGKVVNATLWG 355
Query: 388 DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREW 447
+ +K Q PV+++K +V+ S+ + S+ + +NPD EA++LR W
Sbjct: 356 EDADKFDGSRQ--------PVMAIKGARVSX----SLSILSSSTVIVNPDIPEAYKLRGW 403
Query: 448 FDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDS 507
G+ A ++++ + A N +G +KPD+ + A + +++ ++
Sbjct: 404 LGQRGRLRA-LTLASDTGAVHNINLSWAERCLYSQTRIGSGKKPDYFSAVATVVYLRKEN 462
Query: 508 FCY 510
Y
Sbjct: 463 CLY 465
Score = 131 (51.2 bits), Expect = 6.1e-62, Sum P(3) = 6.1e-62
Identities = 31/93 (33%), Positives = 59/93 (63%)
Query: 3 VNLTPNSIS--LINGGDVNSKPLVQVMDIKLI--GSTQERYRFLISDSVSTQHA-MLATQ 57
+N+ S+S ++ GD + KP++QV++I+ I G+ RYR L+SD ++T + MLATQ
Sbjct: 3 MNMNNGSLSDAIMQQGDTSIKPILQVINIRPITTGNNPPRYRLLMSDGLNTLSSFMLATQ 62
Query: 58 LNDRVKTGQVKKGSVVQLIDYICSTVQNRKIIV 90
LN V+ ++ + Q+ +I +T+++ + +V
Sbjct: 63 LNPLVEEERLSSNCICQINRFIVNTLKDGRYVV 95
Score = 126 (49.4 bits), Expect = 6.1e-62, Sum P(3) = 6.1e-62
Identities = 32/87 (36%), Positives = 45/87 (51%)
Query: 533 WQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDD 592
++C++C+ E YR +L I D WVT FQES E ILG L LK E
Sbjct: 465 YRCEKCDSEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQSTAYLGELK-EKVGH 523
Query: 593 VRFGEIIRSRV-FNQYLFRLKIKEELY 618
V F + S + F+ + FR+++K E Y
Sbjct: 524 V-FDHSLFSHISFSSFSFRIRVKLETY 549
Score = 37 (18.1 bits), Expect = 8.3e-13, Sum P(3) = 8.3e-13
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 403 VGFFPVLSVKSGKV 416
VGFFP +K G +
Sbjct: 95 VGFFPAALLKWGPI 108
>WB|WBGene00017546 [details] [associations]
symbol:rpa-1 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0051096 "positive regulation of helicase activity"
evidence=IDA] [GO:0019899 "enzyme binding" evidence=IPI]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005662 "DNA
replication factor A complex" evidence=ISS] InterPro:IPR004365
InterPro:IPR004591 Pfam:PF01336 GO:GO:0009792 GO:GO:0006898
GO:GO:0005654 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0005662
EMBL:FO080212 GO:GO:0051096 InterPro:IPR013955 Pfam:PF08646
PIR:T34219 RefSeq:NP_495606.1 ProteinModelPortal:Q19537 SMR:Q19537
DIP:DIP-26609N IntAct:Q19537 MINT:MINT-1119512 STRING:Q19537
PaxDb:Q19537 EnsemblMetazoa:F18A1.5 GeneID:174238
KEGG:cel:CELE_F18A1.5 CTD:174238 WormBase:F18A1.5 eggNOG:COG1599
GeneTree:ENSGT00390000012403 HOGENOM:HOG000154096 InParanoid:Q19537
KO:K07466 OMA:IKARVSY NextBio:883159 TIGRFAMs:TIGR00617
Uniprot:Q19537
Length = 655
Score = 481 (174.4 bits), Expect = 1.3e-49, Sum P(2) = 1.3e-49
Identities = 133/444 (29%), Positives = 217/444 (48%)
Query: 208 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 267
++PIA + PY + I V+ K ++R + A+ KVF+F++ DS+G IR T FN V
Sbjct: 223 VMPIAMVTPYVSNFKIHGMVSRKEEIRTFP-AKNT-KVFNFEITDSNGDTIRCTAFNEVA 280
Query: 268 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 327
+ Y I Y +S GS+K A K FN+ +++EI L + S ++ E + PK
Sbjct: 281 ESLYTTITENLSYYLSGGSVKQANKKFNNTGHDYEITLRSDSIIE-AGGELLAAPKLILK 339
Query: 328 FRHISEIESAEXXXXXXXXXXXXXXXPSVPILRKNGMETQRRILNLKDTSGRSVELTLWG 387
+ EI + K G +R + L D SG V LTLWG
Sbjct: 340 RVKLGEIAGYAGQLIDVLVVVEKMDPEATEFTSKAGKSLIKREMELIDESGALVRLTLWG 399
Query: 388 DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGK-SIGTIPSTQLFINPDFAEAHELRE 446
D K +VD V++ K +F+G S+GT +T++ P+ A EL +
Sbjct: 400 DEATKA------LVDDYVQKVIAFKGVIPREFNGGFSLGTGSATRIISVPEIAGVSELYD 453
Query: 447 WFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGR-SEKPDWVTVRAFITFIKS 505
W+ + K V + + AAGG+ NE +T++ ++ G+ S+K D+ TV+A IT +
Sbjct: 454 WY-ANVKPTTEVKMMSQ-AAGGS-NEAPRTIAGLQEMQFGKDSDKGDYATVKAMITRVNP 510
Query: 506 DSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVT 565
+ Y C C KK+ ++C++CN+ +++ + Y++Q ++ D+TG +VT
Sbjct: 511 TNALYRGC----ASEGCQKKLVGENGDYRCEKCNKNMNKFKWLYMMQFELSDETGQVYVT 566
Query: 566 AFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVK 625
AF +S +I+G A EL L E D+ + I F ++RL+ K + Y +E R K
Sbjct: 567 AFGDSAAKIVGKSAAELGELHDESPDE--YNAIFERLQFVPKMWRLRCKMDSYNEEVRQK 624
Query: 626 ITVIRADQVNYSSESRYLLDLISK 649
+TV D VN L +I +
Sbjct: 625 MTVYGVDDVNQDKYIENLKQMIEQ 648
Score = 53 (23.7 bits), Expect = 1.3e-49, Sum P(2) = 1.3e-49
Identities = 17/71 (23%), Positives = 35/71 (49%)
Query: 14 NGGDVNSKPLVQVMDIKLIGSTQE----RYRFLISDSVSTQHAMLATQLNDRVK--TGQV 67
N G +VQV+ K+ Q +R ISD V +A+++ ++D++K +
Sbjct: 33 NNGYPGHDGIVQVLKGKVEQGEQLGHAFTFRIRISDGVFQYNALMSADIDDQIKREVEHL 92
Query: 68 KKGSVVQLIDY 78
+G+++ L +
Sbjct: 93 VEGTIIALTKF 103
>UNIPROTKB|Q19537 [details] [associations]
symbol:rpa-1 "Probable replication factor A 73 kDa subunit"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR004365 InterPro:IPR004591 Pfam:PF01336
GO:GO:0009792 GO:GO:0006898 GO:GO:0005654 GO:GO:0046872
GO:GO:0003677 GO:GO:0006260 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0005662 EMBL:FO080212 GO:GO:0051096
InterPro:IPR013955 Pfam:PF08646 PIR:T34219 RefSeq:NP_495606.1
ProteinModelPortal:Q19537 SMR:Q19537 DIP:DIP-26609N IntAct:Q19537
MINT:MINT-1119512 STRING:Q19537 PaxDb:Q19537 EnsemblMetazoa:F18A1.5
GeneID:174238 KEGG:cel:CELE_F18A1.5 CTD:174238 WormBase:F18A1.5
eggNOG:COG1599 GeneTree:ENSGT00390000012403 HOGENOM:HOG000154096
InParanoid:Q19537 KO:K07466 OMA:IKARVSY NextBio:883159
TIGRFAMs:TIGR00617 Uniprot:Q19537
Length = 655
Score = 481 (174.4 bits), Expect = 1.3e-49, Sum P(2) = 1.3e-49
Identities = 133/444 (29%), Positives = 217/444 (48%)
Query: 208 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 267
++PIA + PY + I V+ K ++R + A+ KVF+F++ DS+G IR T FN V
Sbjct: 223 VMPIAMVTPYVSNFKIHGMVSRKEEIRTFP-AKNT-KVFNFEITDSNGDTIRCTAFNEVA 280
Query: 268 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 327
+ Y I Y +S GS+K A K FN+ +++EI L + S ++ E + PK
Sbjct: 281 ESLYTTITENLSYYLSGGSVKQANKKFNNTGHDYEITLRSDSIIE-AGGELLAAPKLILK 339
Query: 328 FRHISEIESAEXXXXXXXXXXXXXXXPSVPILRKNGMETQRRILNLKDTSGRSVELTLWG 387
+ EI + K G +R + L D SG V LTLWG
Sbjct: 340 RVKLGEIAGYAGQLIDVLVVVEKMDPEATEFTSKAGKSLIKREMELIDESGALVRLTLWG 399
Query: 388 DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGK-SIGTIPSTQLFINPDFAEAHELRE 446
D K +VD V++ K +F+G S+GT +T++ P+ A EL +
Sbjct: 400 DEATKA------LVDDYVQKVIAFKGVIPREFNGGFSLGTGSATRIISVPEIAGVSELYD 453
Query: 447 WFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGR-SEKPDWVTVRAFITFIKS 505
W+ + K V + + AAGG+ NE +T++ ++ G+ S+K D+ TV+A IT +
Sbjct: 454 WY-ANVKPTTEVKMMSQ-AAGGS-NEAPRTIAGLQEMQFGKDSDKGDYATVKAMITRVNP 510
Query: 506 DSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVT 565
+ Y C C KK+ ++C++CN+ +++ + Y++Q ++ D+TG +VT
Sbjct: 511 TNALYRGC----ASEGCQKKLVGENGDYRCEKCNKNMNKFKWLYMMQFELSDETGQVYVT 566
Query: 566 AFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVK 625
AF +S +I+G A EL L E D+ + I F ++RL+ K + Y +E R K
Sbjct: 567 AFGDSAAKIVGKSAAELGELHDESPDE--YNAIFERLQFVPKMWRLRCKMDSYNEEVRQK 624
Query: 626 ITVIRADQVNYSSESRYLLDLISK 649
+TV D VN L +I +
Sbjct: 625 MTVYGVDDVNQDKYIENLKQMIEQ 648
Score = 53 (23.7 bits), Expect = 1.3e-49, Sum P(2) = 1.3e-49
Identities = 17/71 (23%), Positives = 35/71 (49%)
Query: 14 NGGDVNSKPLVQVMDIKLIGSTQE----RYRFLISDSVSTQHAMLATQLNDRVK--TGQV 67
N G +VQV+ K+ Q +R ISD V +A+++ ++D++K +
Sbjct: 33 NNGYPGHDGIVQVLKGKVEQGEQLGHAFTFRIRISDGVFQYNALMSADIDDQIKREVEHL 92
Query: 68 KKGSVVQLIDY 78
+G+++ L +
Sbjct: 93 VEGTIIALTKF 103
>GENEDB_PFALCIPARUM|PFD0470c [details] [associations]
symbol:PFD0470c "replication factor a protein,
putative" species:5833 "Plasmodium falciparum" [GO:0005662 "DNA
replication factor A complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006261 "DNA-dependent DNA
replication" evidence=ISS] InterPro:IPR004365 Pfam:PF01336
GO:GO:0003676 GO:GO:0006261 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 EMBL:AL844503 GO:GO:0005662 InterPro:IPR013955
Pfam:PF08646 KO:K07466 RefSeq:XP_001351411.1 HSSP:P27694
ProteinModelPortal:Q9U0J0 IntAct:Q9U0J0 MINT:MINT-1572664
PRIDE:Q9U0J0 EnsemblProtists:PFD0470c:mRNA GeneID:812392
KEGG:pfa:PFD0470c EuPathDB:PlasmoDB:PF3D7_0409600
ProtClustDB:CLSZ2500502 Uniprot:Q9U0J0
Length = 1145
Score = 468 (169.8 bits), Expect = 5.8e-45, Sum P(2) = 5.8e-45
Identities = 135/459 (29%), Positives = 226/459 (49%)
Query: 208 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 267
++ I L+ Y +W IKARV +K ++RRY + +GKVF+ +L D DG EI+ F V
Sbjct: 683 LMQINKLSQYSSKWIIKARVQSKDNIRRYTSGSKEGKVFNIELCDEDG-EIKANFFGKAV 741
Query: 268 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 327
D++++ IEVG++Y ISKG +K A K FN L +++EI L+ S +++ EE+++IPK ++
Sbjct: 742 DKWFDFIEVGKIYKISKGMIKVANKKFNTLNHDYEITLDENSLIEILDEENENIPKYNYN 801
Query: 328 FRHISEIESAEXXXXXXXXXXXXXXXPSVPI-LRKNGMETQRRILNLKDTSGRSVELTLW 386
F I I++ + I ++K G +R + L D S ++++TLW
Sbjct: 802 FISIDNIKNMNTGSFVDIIAVVLNYQEKMQIFVKKTGQYKDKRDVTLIDESFDTIQVTLW 861
Query: 387 GDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAE-AHELR 445
K + EM ++ ++ K K+ ++ GK + + T++ INPD E A+ L+
Sbjct: 862 ----EKNATIIDEM-NLRDNCIVCFKYLKIGEWQGKKLESHARTKIEINPDNIEKAYILK 916
Query: 446 EWFDSGGK---NAATVSISR-EIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFIT 501
W+ K N+ +S + I EI K V+ + E L S K T FI
Sbjct: 917 NWWIHNKKMICNSINLSSNYINIETQKTIQEIKKNVNLVNEEAL--SGKGIMFTTYGFID 974
Query: 502 FIKSDSFCYTACP----LMIGDRQCNKKVTQSGNRWQ----CDRCNQEIDECDYRYLLQA 553
I ++ Y+ACP MI + + + S N + C +CN+ Y Y +
Sbjct: 975 QIYNNMPVYSACPDCNKKMISNSVDDNEYEPSSNLLEETMYCAKCNKNNIPV-YNYYINL 1033
Query: 554 QIQDQTGLTWVTAFQESGEEIL-GCPAKELYMLKYE--LQDDVRFGEIIRSRVFNQYLFR 610
+I D T +AF + I+ G A+E L+ E +Q+++ +II N++ FR
Sbjct: 1034 KITDSTDSIRASAFANCAKIIMNGLSAEEYMKLRQEYIMQENIENFDIIEKIKLNEFFFR 1093
Query: 611 LKIKEELYGDEQRVKITVIRADQVN--YSSESRYLLDLI 647
+K+ + DE + T+I V RYL+ I
Sbjct: 1094 IKVYMTSHMDELKKNYTIIDIAPVGKLLIDNCRYLIKSI 1132
Score = 44 (20.5 bits), Expect = 5.8e-45, Sum P(2) = 5.8e-45
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 133 NNYSAPNSGTFNLQNSGTFNSQNPG-SFSTP 162
NN A N N QNS +N +F+TP
Sbjct: 275 NNGKAYNHNVHNRQNSEHIMKENNNKNFTTP 305
Score = 43 (20.2 bits), Expect = 7.3e-45, Sum P(2) = 7.3e-45
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 124 NNLPQPVRVNNYSAPNSGTFNLQNSGTFNSQNPGSFSTPNSGTFR 168
NN+ VNN ++ NS + N G+ N G ++ + R
Sbjct: 172 NNMNSMNSVNNMNSMNSMNNSTHNVGSSNG-GAGGYNNRDDNKLR 215
Score = 42 (19.8 bits), Expect = 9.3e-45, Sum P(2) = 9.3e-45
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 125 NLPQPVRVNNYSAPNS--GTFNLQNSGTFNSQNPGSFSTPN 163
N+P VN+Y + N+ F +Q S + + P +S N
Sbjct: 344 NIPNYTNVNDYESKNNLHKPFPVQKSASAY-KGPSEYSEYN 383
>UNIPROTKB|Q9U0J0 [details] [associations]
symbol:PFD0470c "Replication factor a protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005662 "DNA
replication factor A complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006261 "DNA-dependent DNA
replication" evidence=ISS] InterPro:IPR004365 Pfam:PF01336
GO:GO:0003676 GO:GO:0006261 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 EMBL:AL844503 GO:GO:0005662 InterPro:IPR013955
Pfam:PF08646 KO:K07466 RefSeq:XP_001351411.1 HSSP:P27694
ProteinModelPortal:Q9U0J0 IntAct:Q9U0J0 MINT:MINT-1572664
PRIDE:Q9U0J0 EnsemblProtists:PFD0470c:mRNA GeneID:812392
KEGG:pfa:PFD0470c EuPathDB:PlasmoDB:PF3D7_0409600
ProtClustDB:CLSZ2500502 Uniprot:Q9U0J0
Length = 1145
Score = 468 (169.8 bits), Expect = 5.8e-45, Sum P(2) = 5.8e-45
Identities = 135/459 (29%), Positives = 226/459 (49%)
Query: 208 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 267
++ I L+ Y +W IKARV +K ++RRY + +GKVF+ +L D DG EI+ F V
Sbjct: 683 LMQINKLSQYSSKWIIKARVQSKDNIRRYTSGSKEGKVFNIELCDEDG-EIKANFFGKAV 741
Query: 268 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 327
D++++ IEVG++Y ISKG +K A K FN L +++EI L+ S +++ EE+++IPK ++
Sbjct: 742 DKWFDFIEVGKIYKISKGMIKVANKKFNTLNHDYEITLDENSLIEILDEENENIPKYNYN 801
Query: 328 FRHISEIESAEXXXXXXXXXXXXXXXPSVPI-LRKNGMETQRRILNLKDTSGRSVELTLW 386
F I I++ + I ++K G +R + L D S ++++TLW
Sbjct: 802 FISIDNIKNMNTGSFVDIIAVVLNYQEKMQIFVKKTGQYKDKRDVTLIDESFDTIQVTLW 861
Query: 387 GDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAE-AHELR 445
K + EM ++ ++ K K+ ++ GK + + T++ INPD E A+ L+
Sbjct: 862 ----EKNATIIDEM-NLRDNCIVCFKYLKIGEWQGKKLESHARTKIEINPDNIEKAYILK 916
Query: 446 EWFDSGGK---NAATVSISR-EIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFIT 501
W+ K N+ +S + I EI K V+ + E L S K T FI
Sbjct: 917 NWWIHNKKMICNSINLSSNYINIETQKTIQEIKKNVNLVNEEAL--SGKGIMFTTYGFID 974
Query: 502 FIKSDSFCYTACP----LMIGDRQCNKKVTQSGNRWQ----CDRCNQEIDECDYRYLLQA 553
I ++ Y+ACP MI + + + S N + C +CN+ Y Y +
Sbjct: 975 QIYNNMPVYSACPDCNKKMISNSVDDNEYEPSSNLLEETMYCAKCNKNNIPV-YNYYINL 1033
Query: 554 QIQDQTGLTWVTAFQESGEEIL-GCPAKELYMLKYE--LQDDVRFGEIIRSRVFNQYLFR 610
+I D T +AF + I+ G A+E L+ E +Q+++ +II N++ FR
Sbjct: 1034 KITDSTDSIRASAFANCAKIIMNGLSAEEYMKLRQEYIMQENIENFDIIEKIKLNEFFFR 1093
Query: 611 LKIKEELYGDEQRVKITVIRADQVN--YSSESRYLLDLI 647
+K+ + DE + T+I V RYL+ I
Sbjct: 1094 IKVYMTSHMDELKKNYTIIDIAPVGKLLIDNCRYLIKSI 1132
Score = 44 (20.5 bits), Expect = 5.8e-45, Sum P(2) = 5.8e-45
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 133 NNYSAPNSGTFNLQNSGTFNSQNPG-SFSTP 162
NN A N N QNS +N +F+TP
Sbjct: 275 NNGKAYNHNVHNRQNSEHIMKENNNKNFTTP 305
Score = 43 (20.2 bits), Expect = 7.3e-45, Sum P(2) = 7.3e-45
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 124 NNLPQPVRVNNYSAPNSGTFNLQNSGTFNSQNPGSFSTPNSGTFR 168
NN+ VNN ++ NS + N G+ N G ++ + R
Sbjct: 172 NNMNSMNSVNNMNSMNSMNNSTHNVGSSNG-GAGGYNNRDDNKLR 215
Score = 42 (19.8 bits), Expect = 9.3e-45, Sum P(2) = 9.3e-45
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 125 NLPQPVRVNNYSAPNS--GTFNLQNSGTFNSQNPGSFSTPN 163
N+P VN+Y + N+ F +Q S + + P +S N
Sbjct: 344 NIPNYTNVNDYESKNNLHKPFPVQKSASAY-KGPSEYSEYN 383
>DICTYBASE|DDB_G0289513 [details] [associations]
symbol:rfa1 "putative replication factor A
DNA-binding subunit" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR004365 Pfam:PF01336
dictyBase:DDB_G0289513 GenomeReviews:CM000154_GR GO:GO:0003676
EMBL:AAFI02000141 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR013955 Pfam:PF08646 eggNOG:COG1599
KO:K07466 RefSeq:XP_636195.1 ProteinModelPortal:Q54HE3 PRIDE:Q54HE3
EnsemblProtists:DDB0233023 GeneID:8627182 KEGG:ddi:DDB_G0289513
InParanoid:Q54HE3 OMA:SINFPKR Uniprot:Q54HE3
Length = 679
Score = 282 (104.3 bits), Expect = 2.1e-21, P = 2.1e-21
Identities = 118/519 (22%), Positives = 220/519 (42%)
Query: 123 SNNLPQPVRVNNYSA---PNSGTFNLQNSGTFNSQNPGSFSTPNSGTFRAPNAGSIVRSF 179
++N PQP + + P + T NSG + NP + +G R+ N +
Sbjct: 119 NSNQPQPQQQQQHQQQQQPRANTTMGSNSGIASRGNPLANQRNQAGAIRSNNNFGGNSNN 178
Query: 180 XXXXXXXXXXXXNFRNHGPILKNE----APARIIPIAALNPYQG-RWAIKARVTAKGDLR 234
N N G N + I I ++ P ++ I+A V K L+
Sbjct: 179 NNNNNYNNNNNNNNNNSGGGSNNFYADLSTQPITDIESIAPGMNVQFTIRAMVRNKQPLK 238
Query: 235 RYNN-ARGDGKVFSFDLLDSDGGEIRVTCF------NAVVDRFYEIIEVGRVYLISKGSL 287
+N A G+GK+FS +L+DS G EI+ CF N ++ Y+ E G+VY I + +
Sbjct: 239 SWNKGANGEGKLFSMELVDSTG-EIKCACFSDSSNPNNFINALYDCFENGKVYFIQRFFV 297
Query: 288 KPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAEXXXXXXXXX 347
K A K +N L ++ E+ + + S V + ++ P ++F+ I++IE+ E
Sbjct: 298 KSANKLYNTLSHQSELSINSESRVMISPDQTQFTP--HYNFKKIADIENLEKNDTVDVIG 355
Query: 348 XXXXXXPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFP 407
P + K G E + + + D + S+ + W N++ ++ V VG
Sbjct: 356 AITNIDPIANLTSKQGKEFTKFGITIADDTNASINVVFW----NEKATEVAPQVKVG--D 409
Query: 408 VLSVKSGKVNDFSGKSIGTIPSTQLFINPD-FAEAHELR---EWFDSGGKNAATVSISRE 463
++++K KV+DFSG+++ + +N + E LR + FD + T++ S
Sbjct: 410 IIAMKGVKVSDFSGRTLSYSFGSSFGLNDEQLQETSNLRAHLQNFDVNSLQSLTIASSYT 469
Query: 464 IAAGGAKNE---IHKTVSQIKNEGLG--RSEKPDWVTVRAFITFI------KSDSFCYTA 512
++ N + +T+S+ + ++ K + T+ F + + D +
Sbjct: 470 QSSYEQVNLPIFLIRTISEGSPLFISDPKTNKKLYRTIGQFQRVVPLSQAGEMDKGDEIS 529
Query: 513 CPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGE 572
+ + C KK +S C +C D+ +Y Y + ++ D V ++G+
Sbjct: 530 SKMEWKYKAC-KKCKKSCPEGSCPQCGS--DDWEYAYRMSLKLSDGDDAISVEVMGKTGD 586
Query: 573 EILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRL 611
+ G A ELY + E + EI + + N Y+ L
Sbjct: 587 RLFGKSAAELYQMNQE-----QINEIFNTVLSNNYVVSL 620
>TAIR|locus:2011521 [details] [associations]
symbol:AT1G52950 "AT1G52950" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0009506 "plasmodesma" evidence=IDA] EMBL:CP002684
GO:GO:0009506 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
EMBL:AC019018 InterPro:IPR013955 Pfam:PF08646 KO:K07466
InterPro:IPR003871 Pfam:PF02721 IPI:IPI00548251 RefSeq:NP_175703.1
UniGene:At.52167 ProteinModelPortal:Q9C926 SMR:Q9C926
EnsemblPlants:AT1G52950.1 GeneID:841728 KEGG:ath:AT1G52950
TAIR:At1g52950 HOGENOM:HOG000152224 InParanoid:Q9C926 OMA:DGNKIQA
PhylomeDB:Q9C926 ArrayExpress:Q9C926 Genevestigator:Q9C926
Uniprot:Q9C926
Length = 566
Score = 221 (82.9 bits), Expect = 7.3e-15, P = 7.3e-15
Identities = 87/436 (19%), Positives = 176/436 (40%)
Query: 211 IAALNPYQGRWAIKARVTAKGDLRRYNN-ARGDGKVFSFDLLDSDGGEIRVTCFNAVVDR 269
I L P++ W I+ ++ L +N+ +G G + L D DG +I+ + +
Sbjct: 10 IKNLKPFKTSWCIQVKI-----LHAWNHYTKGSGMSYEMMLADEDGNKIQAGIKKEHLLK 64
Query: 270 FYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFR 329
+++G +I + S+ A + + + I +++++ D I +F
Sbjct: 65 LQRYVKIGHWTIIEEFSVTKASGLYRSTTHPYRINIQSSTRFSNSPTISDEIWLDLVNFN 124
Query: 330 HISEIESAEXXXXXXXXXXXXXXXPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDF 389
+ + + +L G T++ L+DT + +LWG F
Sbjct: 125 DV--LSGTLDQNKLVNVIGQLVNVGEIQLLDVQGKPTKKIDFQLRDTDDNRLPCSLWGKF 182
Query: 390 CNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSG-KSIGT-IPSTQLFINPDFAEAHELREW 447
++ + +E VG + ++ K+ + +SI ++++FINP E E +
Sbjct: 183 ADQIHKVSKE--SVGGIVICLIRWAKLGHYKEIRSISNAFDASEVFINPILTEVEEFKNL 240
Query: 448 FDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDS 507
S G + + E K + L S + + V + I I D
Sbjct: 241 LPSDGLALTIMEPKPRFQPLRVREERSKQFERKTIAELKASFEVEKVKIICSILSIDLDY 300
Query: 508 FCYTACPLMIGDRQC-NKKVTQSGNR---WQCDRCNQEIDECDYRYLLQAQIQDQTGLTW 563
Y + + +KK SG + ++CD+C ++ + RY L I D TG +
Sbjct: 301 SWYYYAHIKCNKKVFKSKKTLSSGAKKIIYRCDKCATDVTSIEARYWLHLDIMDNTGESK 360
Query: 564 VTAFQESGEEILGCPAKELYMLKYELQDDVR-FGEIIRSRVFNQYLFRLKIKEELYG--- 619
+ F E I+GCPA EL + E D+ + +++++ + Y F + ++++
Sbjct: 361 LMLFDSFVEPIIGCPATELLDVTNEQIDEPQPLPDVVKNIIGKTYQFLVCVEQDNISRGN 420
Query: 620 DEQRVKITVIRADQVN 635
DE +V V+ + +N
Sbjct: 421 DEYKVA-EVLTSQNIN 435
>UNIPROTKB|I3L2M5 [details] [associations]
symbol:RPA1 "Replication protein A 70 kDa DNA-binding
subunit" species:9606 "Homo sapiens" [GO:0006260 "DNA replication"
evidence=IEA] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=IEA] [GO:0000800 "lateral
element" evidence=IEA] [GO:0001673 "male germ cell nucleus"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0005662
"DNA replication factor A complex" evidence=IEA] [GO:0007126
"meiosis" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0030097 "hemopoiesis"
evidence=IEA] [GO:0048873 "homeostasis of number of cells within a
tissue" evidence=IEA] [GO:0051276 "chromosome organization"
evidence=IEA] InterPro:IPR007199 Pfam:PF04057 GO:GO:0007126
GO:GO:0008284 GO:GO:0006260 GO:GO:0001701 GO:GO:0003682
GO:GO:0001673 GO:GO:0003697 GO:GO:0048873 GO:GO:0000724
GO:GO:0030097 GO:GO:0000794 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0051276 GO:GO:0005662 EMBL:AC130689
HGNC:HGNC:10289 ChiTaRS:RPA1 Ensembl:ENST00000570451 Bgee:I3L2M5
Uniprot:I3L2M5
Length = 153
Score = 158 (60.7 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 43/135 (31%), Positives = 78/135 (57%)
Query: 16 GDVNSKPLVQVMDIKLI--GSTQERYRFLISDSVSTQHA-MLATQLNDRVKTGQVKKGSV 72
GD N KP++QV++I+ I G++ RYR L+SD ++T + MLATQLN V+ Q+ V
Sbjct: 4 GDTNIKPILQVINIRPITTGNSPPRYRLLMSDGLNTLSSFMLATQLNPLVEEEQLSSNCV 63
Query: 73 VQLIDYICSTVQN-RKIIVVLNMETIILDCEP----IGNPKIFSESELTAQKTIPSNNLP 127
Q+ +I +T+++ R++++++ +E ++ E IGNP ++E L + P
Sbjct: 64 CQIHRFIVNTLKDGRRVVILMELE-VLKSAEAVGVKIGNPVPYNEG-LGQPQVAPPAPAA 121
Query: 128 QPVRVNNYSAPNSGT 142
P ++ P +G+
Sbjct: 122 SPA-ASSRPQPQNGS 135
>UNIPROTKB|I3L524 [details] [associations]
symbol:RPA1 "Replication protein A 70 kDa DNA-binding
subunit" species:9606 "Homo sapiens" [GO:0006260 "DNA replication"
evidence=IEA] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=IEA] [GO:0000800 "lateral
element" evidence=IEA] [GO:0001673 "male germ cell nucleus"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0005662
"DNA replication factor A complex" evidence=IEA] [GO:0007126
"meiosis" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0030097 "hemopoiesis"
evidence=IEA] [GO:0048873 "homeostasis of number of cells within a
tissue" evidence=IEA] [GO:0051276 "chromosome organization"
evidence=IEA] InterPro:IPR007199 Pfam:PF04057 GO:GO:0007126
GO:GO:0008284 GO:GO:0006260 GO:GO:0001701 GO:GO:0003682
GO:GO:0001673 GO:GO:0003697 GO:GO:0048873 GO:GO:0000724
GO:GO:0030097 GO:GO:0000794 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0051276 GO:GO:0005662 EMBL:AC130689
HGNC:HGNC:10289 ChiTaRS:RPA1 Ensembl:ENST00000571058 Bgee:I3L524
Uniprot:I3L524
Length = 124
Score = 156 (60.0 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 38/105 (36%), Positives = 68/105 (64%)
Query: 16 GDVNSKPLVQVMDIKLI--GSTQERYRFLISDSVSTQHA-MLATQLNDRVKTGQVKKGSV 72
GD N KP++QV++I+ I G++ RYR L+SD ++T + MLATQLN V+ Q+ V
Sbjct: 4 GDTNIKPILQVINIRPITTGNSPPRYRLLMSDGLNTLSSFMLATQLNPLVEEEQLSSNCV 63
Query: 73 VQLIDYICSTVQN-RKIIVVLNMETIILDCEP----IGNPKIFSE 112
Q+ +I +T+++ R++++++ +E ++ E IGNP ++E
Sbjct: 64 CQIHRFIVNTLKDGRRVVILMELE-VLKSAEAVGVKIGNPVPYNE 107
>WB|WBGene00019858 [details] [associations]
symbol:R03H10.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] InterPro:IPR004365
Pfam:PF01336 GO:GO:0003690 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 eggNOG:COG1599 GeneTree:ENSGT00390000002895
EMBL:FO081265 PIR:T16673 RefSeq:NP_494733.2
ProteinModelPortal:Q9GYL9 SMR:Q9GYL9 EnsemblMetazoa:R03H10.6
GeneID:187558 KEGG:cel:CELE_R03H10.6 UCSC:R03H10.6 CTD:187558
WormBase:R03H10.6 HOGENOM:HOG000152608 NextBio:935694
Uniprot:Q9GYL9
Length = 324
Score = 126 (49.4 bits), Expect = 6.8e-05, P = 6.8e-05
Identities = 35/108 (32%), Positives = 51/108 (47%)
Query: 205 PARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFN 264
PA + PIA LN + I RVT D RR KVFSF++ D +G IR F
Sbjct: 117 PAAVTPIANLNDSVDNFKIHGRVTLMDDKRRPE------KVFSFEITDVNGYTIRCVAFG 170
Query: 265 AVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVD 312
+ R Y I + Y ++ G +K +N + +EI L+ T++
Sbjct: 171 ELGVRLYGSIAKDQSYYLTGGKVKNGHTLYNQTGHAFEIILDEFPTIE 218
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.134 0.393 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 653 626 0.00090 120 3 11 22 0.41 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 31
No. of states in DFA: 619 (66 KB)
Total size of DFA: 339 KB (2171 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 52.56u 0.13s 52.69t Elapsed: 00:00:02
Total cpu time: 52.57u 0.13s 52.70t Elapsed: 00:00:02
Start: Tue May 21 09:07:55 2013 End: Tue May 21 09:07:57 2013