BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006263
(653 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6NY74|RFA1_DANRE Replication protein A 70 kDa DNA-binding subunit OS=Danio rerio
GN=rpa1 PE=1 SV=1
Length = 601
Score = 357 bits (915), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 224/659 (33%), Positives = 363/659 (55%), Gaps = 72/659 (10%)
Query: 1 MPVNLTPNSI-SLINGGDVNSKPLVQVMDIKLI--GSTQERYRFLISDSVSTQHA-MLAT 56
M V L+ +I SL G +VN+ P++Q ++I+ I G+ R+R ++SD + T + ML+T
Sbjct: 1 MTVRLSEGAIESLSKGTEVNN-PILQCVNIRKIDGGNGVSRFRVMMSDGLHTMSSFMLST 59
Query: 57 QLNDRVKTGQVKKGSVVQLIDYICSTVQN-RKIIVVLNMETI-ILDCEP--IGNPKIFSE 112
QLN + Q+ V L + + +++ R+++V+L++E + D P IG+P + E
Sbjct: 60 QLNPMAEQNQLATNCVCVLKRSVTNVLKDGRRVVVILDIEVLKSADQMPGKIGDPTPYVE 119
Query: 113 SELTAQKTIPSNNLPQPVRVNNYSAPNSGTFNLQNSGTFNSQNPGSFSTPNSGTF-RAPN 171
+ A T P AP + QN + GS P++ +F + P
Sbjct: 120 GQSKAPSTAP--------------APTARPLQPQNG------SDGSTYRPSAQSFGKKPM 159
Query: 172 AGSIVRSFQPTVQPPYQPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKG 231
A P P ++++PIA+LNPYQ +W I+ARVT K
Sbjct: 160 AA------------PNTPG-------------GSSKVVPIASLNPYQSKWTIRARVTNKS 194
Query: 232 DLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQ 291
+R ++N+RGDGK+FS +L+D + GEIR T FN VD+F+ +IE G+V+ ISKG+LK A
Sbjct: 195 AIRTWSNSRGDGKLFSMELVD-ESGEIRATGFNNEVDKFFSLIEQGKVFYISKGTLKIAN 253
Query: 292 KNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVIS 351
K F+ LKN++E+ L +++ C + +D +P Q F I+++ES E ++I+DVIG+ +
Sbjct: 254 KQFSSLKNDYEMTLNGETSIIPCEDSND-VPMLQCDFVSIADLESREKDTILDVIGVCKN 312
Query: 352 VNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSV 411
I+ KN E +R + L D SGR ++LT+WG E D P+L++
Sbjct: 313 AEDVARIMTKNSREVSKRNIQLIDMSGRVIQLTMWGSDA--------ETFDGSGQPILAI 364
Query: 412 KSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKN 471
K +++DF G+S+ T+ S+ + INPD EA++LR W+D G S++ GG N
Sbjct: 365 KGARLSDFGGRSLSTLYSSTVMINPDIPEAYKLRGWYDKEGHALDGQSMTELRGPGGGGN 424
Query: 472 EIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT-QSG 530
KT++++KNE LG +K D+ + A I +I+ ++ Y ACP + CNKKV Q
Sbjct: 425 TNWKTLAEVKNEHLGHGDKADYFSCIATIVYIRKENCLYQACP----SKDCNKKVVDQQN 480
Query: 531 NRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQ 590
++C++C++E + YR +L A I D WVT FQ++ E +LG + L LK
Sbjct: 481 GMFRCEKCDKEFPDFKYRLMLSANIADFGDNQWVTCFQDTAETLLGQNSSYLGQLKD--T 538
Query: 591 DDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 649
++ F E+ + FN ++FR ++K E Y DE R+K+TV+ A V++ S+ L+ I K
Sbjct: 539 NEAAFDEVFQHANFNTFVFRNRVKLETYNDESRIKVTVVDAKPVDHREYSKRLIINIRK 597
>sp|P27694|RFA1_HUMAN Replication protein A 70 kDa DNA-binding subunit OS=Homo sapiens
GN=RPA1 PE=1 SV=2
Length = 616
Score = 355 bits (912), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 227/651 (34%), Positives = 360/651 (55%), Gaps = 60/651 (9%)
Query: 11 SLINGGDVNSKPLVQVMDIKLI--GSTQERYRFLISDSVSTQHA-MLATQLNDRVKTGQV 67
+++ GD N KP++QV++I+ I G++ RYR L+SD ++T + MLATQLN V+ Q+
Sbjct: 12 AIMQKGDTNIKPILQVINIRPITTGNSPPRYRLLMSDGLNTLSSFMLATQLNPLVEEEQL 71
Query: 68 KKGSVVQLIDYICSTVQN-RKIIVVLNMETIILDCEPIGNPKIFSESELTAQKTIPSNNL 126
V Q+ +I +T+++ R++++++ +E ++ E +G
Sbjct: 72 SSNCVCQIHRFIVNTLKDGRRVVILMELE-VLKSAEAVG--------------------- 109
Query: 127 PQPVRVNNYSAPNSGTFNLQNSGTFNSQNPGSFSTPNSGTFRAPNAGSIVRSFQPTVQPP 186
V++ N N G Q + + +P + S P P GS TV
Sbjct: 110 ---VKIGNPVPYNEGLGQPQVAPPAPAASPAASSRPQ------PQNGS--SGMGSTVSKA 158
Query: 187 YQPPPNF-RNHGPILKNEA---PARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGD 242
Y F + GP L + + ++++PIA+L PYQ +W I ARVT K +R ++N+RG+
Sbjct: 159 YGASKTFGKAAGPSLSHTSGGTQSKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGE 218
Query: 243 GKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWE 302
GK+FS +L+D + GEIR T FN VD+F+ +IEV +VY SKG+LK A K F +KN++E
Sbjct: 219 GKLFSLELVD-ESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYE 277
Query: 303 IFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPI-LRK 361
+ ++V C E+D +P QF F I ++E+ +S+VD+IGI S + I +R
Sbjct: 278 MTFNNETSVMPC-EDDHHLPTVQFDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRS 336
Query: 362 NGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSG 421
N E +R + L DTSG+ V TLWG+ +K Q PVL++K +V+DF G
Sbjct: 337 NNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQ--------PVLAIKGARVSDFGG 388
Query: 422 KSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAG-GAKNEIHKTVSQI 480
+S+ + S+ + NPD EA++LR WFD+ G+ VSIS + G G N KT+ ++
Sbjct: 389 RSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQALDGVSISDLKSGGVGGSNTNWKTLYEV 448
Query: 481 KNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCN 539
K+E LG+ +KPD+ + A + +++ ++ Y ACP + CNKKV Q ++C++C+
Sbjct: 449 KSENLGQGDKPDYFSSVATVVYLRKENCMYQACPT----QDCNKKVIDQQNGLYRCEKCD 504
Query: 540 QEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEII 599
E YR +L I D WVT FQES E ILG A L LK +++ F E+
Sbjct: 505 TEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKD--KNEQAFEEVF 562
Query: 600 RSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKS 650
++ F ++FR+++K E Y DE R+K TV+ V+Y R L+ I +S
Sbjct: 563 QNANFRSFIFRVRVKVETYNDESRIKATVMDVKPVDYREYGRRLVMSIRRS 613
>sp|Q5R7Q4|RFA1_PONAB Replication protein A 70 kDa DNA-binding subunit OS=Pongo abelii
GN=RPA1 PE=2 SV=1
Length = 616
Score = 350 bits (897), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 229/655 (34%), Positives = 359/655 (54%), Gaps = 68/655 (10%)
Query: 11 SLINGGDVNSKPLVQVMDIKLI--GSTQERYRFLISDSVSTQHA-MLATQLNDRVKTGQV 67
+++ GD N KP++QV++I+ I G++ RYR L+SD ++T + M ATQLN V+ Q+
Sbjct: 12 AIMQKGDTNIKPILQVINIRPITTGNSPPRYRLLMSDGLNTLSSFMSATQLNPLVEQEQL 71
Query: 68 KKGSVVQLIDYICSTVQN-RKIIVVLNMETIILDCE----PIGNPKIFSESELTAQKTIP 122
V Q+ +I +T+++ R++++++ +E ++ E IGNP ++E
Sbjct: 72 SSNCVCQINRFIVNTLKDGRRVVILMELE-VLKSAEVVGVKIGNPVPYNEG--------- 121
Query: 123 SNNLPQPVRVNNYSAPNSGTFNLQNSGTFNSQNPGSFSTPNSGTFRAPNAGSIVRSFQPT 182
L QP + S S P +GT AGS T
Sbjct: 122 ---LGQP--------------QVAPPAPAASPAASSRPQPQNGT---SGAGS-------T 154
Query: 183 VQPPYQPPPNF-RNHGPILKNEA---PARIIPIAALNPYQGRWAIKARVTAKGDLRRYNN 238
V Y F + GP L + + ++++PIA+L PYQ +W I ARVT K +R ++N
Sbjct: 155 VSKAYGASKTFGKAAGPSLSHNSGGTQSKVVPIASLTPYQSKWTICARVTNKSQIRTWSN 214
Query: 239 ARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLK 298
+RG+ K+FS +L+D + GEIR T FN VD+F+ +IEV +VY SKG+LK A K F +K
Sbjct: 215 SRGEEKLFSLELVD-ESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVK 273
Query: 299 NEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPI 358
N++E+ ++V C E+D +P QF F I ++E+ +S+VD+IGI S + I
Sbjct: 274 NDYEMTFNNETSVMPC-EDDHHLPTVQFDFTGIDDLENKSKDSLVDIIGICKSYEDATKI 332
Query: 359 -LRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVN 417
+R N E +R + L DTSG+ V TLWG+ +K Q PVL++K +V+
Sbjct: 333 TVRSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQ--------PVLAIKGARVS 384
Query: 418 DFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAG-GAKNEIHKT 476
DF G+S+ + S+ + NPD EA++LR WFD+ G+ VSIS + G G N KT
Sbjct: 385 DFGGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQALDGVSISDLKSGGVGGGNTNWKT 444
Query: 477 VSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQC 535
+ ++K+E LG+ +KPD+ + A + +++ ++ Y ACP + CNKKV Q ++C
Sbjct: 445 LYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPT----QDCNKKVIDQQNGLYRC 500
Query: 536 DRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRF 595
++C+ E YR +L I D WVT FQES E ILG A L LK +++ F
Sbjct: 501 EKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKD--KNEQAF 558
Query: 596 GEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKS 650
E+ ++ F ++FR+++K E Y DE R+K TV+ V+Y R L+ I +S
Sbjct: 559 EEVFQNANFRSFIFRVRVKVETYNDESRIKATVMDVKPVDYREYGRRLVMSIRRS 613
>sp|Q8VEE4|RFA1_MOUSE Replication protein A 70 kDa DNA-binding subunit OS=Mus musculus
GN=Rpa1 PE=2 SV=1
Length = 623
Score = 344 bits (883), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 218/649 (33%), Positives = 354/649 (54%), Gaps = 65/649 (10%)
Query: 21 KPLVQVMDIKLI--GSTQERYRFLISDSVSTQHA-MLATQLNDRVKTGQVKKGSVVQLID 77
KP++QV++I+ I G+ RYR L+SD ++T + MLATQLN V+ GQ+ V Q+
Sbjct: 22 KPILQVINIRPISTGNRSPRYRLLMSDGLNTLSSFMLATQLNTLVEGGQLASNCVCQVHK 81
Query: 78 YICSTVQN-RKIIVVLNMETIILDCE----PIGNPKIFSES---ELTAQKTIPSNNLPQP 129
+I +T+++ RK++V++++E ++ E IGNP ++E + Q+ +P P
Sbjct: 82 FIVNTLKDGRKVVVLMDLE-VMKSAEDVGLKIGNPVPYNEGYGQQQQQQQQQQQQAVPSP 140
Query: 130 VRVNNYSA----PNSGTFNLQNSGTFNSQNPGSFSTPNSGTFRAPNAGSIVRSFQPTVQP 185
A P +G+ + ++ F P P+ G+
Sbjct: 141 ASAATPPASKPQPQNGSLGMGSTAAKAYGASKPFGKPAGTGLLQPSGGT----------- 189
Query: 186 PYQPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKV 245
++++PIA+L PYQ +W I ARVT K +R ++N+RG+GK+
Sbjct: 190 -------------------QSKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKL 230
Query: 246 FSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFL 305
FS +L+D + GEIR T FN VD+F+ +IEV +VY SKG+LK A K F+ +KN++E+
Sbjct: 231 FSLELVD-ESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGALKIANKQFSAVKNDYEMTF 289
Query: 306 EATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPI-LRKNGM 364
++V C E+ +P QF F I ++ES +++VD+IGI S S+ I ++ N
Sbjct: 290 NNETSVLPC-EDGHHLPTVQFDFTGIGDLESKAKDALVDIIGICKSYEDSIKITVKSNNR 348
Query: 365 ETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSI 424
E +R + L D SG+ V TLWG+ +K Q PV+++K +V+DF G+S+
Sbjct: 349 EVAKRNIYLMDMSGKVVTTTLWGEDADKFDGSRQ--------PVMAIKGARVSDFGGRSL 400
Query: 425 GTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAG-GAKNEIHKTVSQIKNE 483
+ S+ + +NPD EA++LR WFDS G+ VSIS + G G N KT+ + K+E
Sbjct: 401 SVLSSSTVIVNPDIPEAYKLRGWFDSEGQALDGVSISDHRSGGAGGGNTNWKTLHEAKSE 460
Query: 484 GLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEI 542
LG+ +K D+ + A + F++ ++ Y ACP + CNKKV Q ++C++C++E
Sbjct: 461 NLGQGDKADYFSTVAAVVFLRKENCMYQACPT----QDCNKKVIDQQNGLYRCEKCDREF 516
Query: 543 DECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSR 602
YR +L A I D WVT FQES E ILG +Y+ + + +++ F E+ ++
Sbjct: 517 PNFKYRMILSANIADFQENQWVTCFQESAEAILG--QNTMYLGELKEKNEQAFEEVFQNA 574
Query: 603 VFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKSF 651
F + FR+++K E Y DE R+K TV+ V++ R L+ I K+
Sbjct: 575 NFRSFTFRIRVKLETYNDESRIKATVMDVKPVDFRDYGRRLIANIRKNM 623
>sp|Q5FW17|RFA1_XENTR Replication protein A 70 kDa DNA-binding subunit OS=Xenopus
tropicalis GN=rpa1 PE=2 SV=1
Length = 609
Score = 338 bits (867), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 224/659 (33%), Positives = 355/659 (53%), Gaps = 68/659 (10%)
Query: 1 MPVNLTPNSISLINGGDVNSKPLVQVMDIKLI--GSTQERYRFLISDSVSTQHA-MLATQ 57
+PV L+ +IS I GGD + KP +QV++I+ I G+ RYR L+SD ++T + MLATQ
Sbjct: 3 LPV-LSEGAISAILGGDSSCKPTLQVINIRSINTGNGPPRYRLLMSDGLNTLSSFMLATQ 61
Query: 58 LNDRVKTGQVKKGSVVQLIDYICSTVQN-RKIIVVLNMETII---LDCEPIGNPKIFSES 113
LN V + + Q+ +I + +++ R++I+V+ ME + L IGNP +++
Sbjct: 62 LNFLVDNNLLATNCICQVSRFIVNNLKDGRRVIIVMEMEVLKSADLVKGKIGNPHPYNDG 121
Query: 114 ELTAQKTIPSNNLPQPV-RVNNYSAPNSGTFNLQNSGTFNSQNPGSFSTPNSGTFRAPNA 172
+ Q P+ P + N SAP + N S F
Sbjct: 122 QGPPQPAAPAPASAPPPSKPQNISAPPPPSMNRGASKLFG-------------------G 162
Query: 173 GSIVRSFQPTVQPPYQPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGD 232
GS+V + + ++++PIA+LNPYQ +W ++ARVT KG
Sbjct: 163 GSVVNT----------------------PGGSQSKVVPIASLNPYQSKWTVRARVTNKGQ 200
Query: 233 LRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQK 292
+R ++N+RG+GK+FS +++D + GEIR T FN D+F+ +IEV +VY SKG+LK A K
Sbjct: 201 IRTWSNSRGEGKLFSIEMVD-ESGEIRATAFNEQADKFFSLIEVNKVYYFSKGTLKIANK 259
Query: 293 NFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISV 352
+ +KN++E+ + ++V C + D +P QF F I E+ES ++++D+IGI +
Sbjct: 260 QYTSVKNDYEMTFNSETSVIPCDDSAD-VPMVQFEFVPIGELESKNKDTVLDIIGICKNA 318
Query: 353 NPSVPI-LRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSV 411
+ +R N E +R +NL D+SG+ V TLWG+ +K Q PV+++
Sbjct: 319 EEVTKVTIRSNNREVSKRNINLMDSSGKVVSTTLWGEDADKFDGSRQ--------PVVAI 370
Query: 412 KSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKN 471
K +++DF G+S+ + S+ + INPD EA +LR WFDS G+ SIS G N
Sbjct: 371 KGARLSDFGGRSLSVLSSSTVMINPDIPEAFKLRAWFDSEGQVVEGTSISESRGGTGGGN 430
Query: 472 EIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT-QSG 530
K++ ++K E LG EK D+ T A I +++ ++ Y ACP + CNKKV Q
Sbjct: 431 TNWKSLLEVKTENLGHGEKADYFTSVATIVYLRKENCLYQACP----SQDCNKKVIDQQN 486
Query: 531 NRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQ 590
++C++C++E YR +L A I D W+T FQES E ILG A L LK +
Sbjct: 487 GLFRCEKCDKEFPNYKYRLILSANIADFGENQWITCFQESAESILGQNATYLGELKE--K 544
Query: 591 DDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 649
++ + E+ ++ F Y FR+++K E Y DE R+K T + V++ SR L+ I K
Sbjct: 545 NEQAYDEVFQNANFRSYTFRIRVKLETYNDESRIKATAMDVKPVDHKEYSRRLIMNIRK 603
>sp|Q01588|RFA1_XENLA Replication protein A 70 kDa DNA-binding subunit OS=Xenopus laevis
GN=rpa1 PE=1 SV=1
Length = 609
Score = 336 bits (862), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 223/655 (34%), Positives = 357/655 (54%), Gaps = 67/655 (10%)
Query: 5 LTPNSISLINGGDVNSKPLVQVMDIKLI--GSTQERYRFLISDSVSTQHA-MLATQLNDR 61
L+ +IS + GGD + KP +QV++I+ I G+ RYR L+SD ++T + MLATQLN
Sbjct: 6 LSEGAISAMLGGDSSCKPTLQVINIRPINTGNGPPRYRLLMSDGLNTLSSFMLATQLNSL 65
Query: 62 VKTGQVKKGSVVQLIDYICSTVQN-RKIIVVLNMETII---LDCEPIGNPKIFSESELTA 117
V + + Q+ +I + +++ R++I+V+ ++ + L IGNP+ +++ +
Sbjct: 66 VDNNLLATNCICQVSRFIVNNLKDGRRVIIVMELDVLKSADLVMGKIGNPQPYNDGQPQP 125
Query: 118 QKTIPSNNLPQPVRVNNYSAPNSGTFNLQNSGTFNSQNPGSFSTPNSGTFRAPNAGSIVR 177
P+ SAP LQN NS P S N GT + GS++
Sbjct: 126 AAPAPA------------SAPAPAPSKLQN----NSAPPPSM---NRGTSKLFGGGSLLN 166
Query: 178 SFQPTVQPPYQPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYN 237
+ + ++++PIA+LNPYQ +W ++ARVT KG +R ++
Sbjct: 167 T----------------------PGGSQSKVVPIASLNPYQSKWTVRARVTNKGQIRTWS 204
Query: 238 NARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHL 297
N+RG+GK+FS +++D + GEIR T FN D+F+ IIEV +VY SKG+LK A K + +
Sbjct: 205 NSRGEGKLFSIEMVD-ESGEIRATAFNEQADKFFSIIEVNKVYYFSKGTLKIANKQYTSV 263
Query: 298 KNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVP 357
KN++E+ + ++V C + D +P QF F I E+ES ++++D+IG+ +V
Sbjct: 264 KNDYEMTFNSETSVIPCDDSAD-VPMVQFEFVSIGELESKNKDTVLDIIGVCKNVEEVTK 322
Query: 358 I-LRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKV 416
+ ++ N E +R ++L D+SG+ V TLWG+ +K Q PV+++K ++
Sbjct: 323 VTIKSNNREVSKRSIHLMDSSGKVVSTTLWGEDADKFDGSRQ--------PVVAIKGARL 374
Query: 417 NDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISR-EIAAGGAKNEIHK 475
+DF G+S+ + S+ + INPD EA +LR WFDS G+ SIS G N K
Sbjct: 375 SDFGGRSLSVLSSSTVMINPDIPEAFKLRAWFDSEGQVVEGTSISESRGGGTGGGNTNWK 434
Query: 476 TVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQ 534
++ ++KNE LG EK D+ T A I +++ ++ Y ACP + CNKKV Q ++
Sbjct: 435 SLLEVKNENLGHGEKADYFTSVATIVYLRKENCLYQACP----SQDCNKKVIDQQNGLFR 490
Query: 535 CDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVR 594
C++CN+E YR +L A I D W+T FQES E ILG A L LK +++
Sbjct: 491 CEKCNKEFPNFKYRLILSANIADFGENQWITCFQESAESILGQNATYLGELKE--KNEQA 548
Query: 595 FGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 649
+ E+ ++ F Y FR ++K E Y DE R+K T + V++ SR L+ I K
Sbjct: 549 YDEVFQNANFRSYTFRARVKLETYNDESRIKATAVDVKPVDHKEYSRRLIMNIRK 603
>sp|Q5ZJJ2|RFA1_CHICK Replication protein A 70 kDa DNA-binding subunit OS=Gallus gallus
GN=RPA1 PE=2 SV=1
Length = 614
Score = 331 bits (849), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 223/661 (33%), Positives = 360/661 (54%), Gaps = 62/661 (9%)
Query: 1 MPVNLTPNSISLINGGDVNSKPLVQVMDIKLI--GSTQERYRFLISDSVSTQHA-MLATQ 57
M V L+ +I+ I G+ KP++QV++ + I G+ RYR L+SD V+T + MLATQ
Sbjct: 1 MSVRLSEGAIAAIMQGENVYKPVLQVINTRAIATGNGPPRYRVLMSDGVNTLSSFMLATQ 60
Query: 58 LNDRVKTGQVKKGSVVQLIDYICSTVQN-RKIIVVLNME---TIILDCEPIGNPKIFSES 113
LN V+ ++ + Q+ +I +++++ R+++++++++ T + +GNP ++E
Sbjct: 61 LNPLVEEERLSAHCICQVNRFIVNSLKDGRRVVILMDLDVLKTADMVGGTVGNPVPYNEG 120
Query: 114 ELTAQKTIPSNNLPQPVRVNNYSAPNSGTFNLQNSGTFNSQNPGSFSTPNSGTFRAPNAG 173
+ + + P+ N +APN Q G+ S S AP
Sbjct: 121 QGQQRSSAPTAN----------AAPNKP-----------QQQDGNLSVAGSA---APKYH 156
Query: 174 SIVRSFQPTVQPPYQPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDL 233
+ F P P ++++PIA+LNPYQ +W I ARVT KG +
Sbjct: 157 APSNQFSKASAPSSVKTPG----------GTQSKVVPIASLNPYQSKWTICARVTQKGQI 206
Query: 234 RRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKN 293
R ++N+RG+GK+FS +L+D + GEIR T FN D+F+ +IE+ +VY +KG+LK A K
Sbjct: 207 RTWSNSRGEGKLFSIELVD-ESGEIRATAFNDQADKFFPLIELNKVYYFTKGNLKTANKQ 265
Query: 294 FNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVN 353
+ +KN++EI ++V C ++ +P QF F IS++E+ +SIVDVIGI S
Sbjct: 266 YTAVKNDYEITFNNETSVVPC-DDAQHLPSVQFDFVSISDLENTPKDSIVDVIGICKSYE 324
Query: 354 PSVPILRK-NGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVK 412
I+ K + E +R ++L DTSG+ V TLWG+ E +K D PV+++K
Sbjct: 325 DVTKIVVKASNREVSKRNVHLMDTSGKLVTATLWGN----EAEKF----DGSRQPVIAIK 376
Query: 413 SGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAK-- 470
+V+DF G+S+ + S+ + +NPD EA +LR WFDS G+ SIS ++ G A
Sbjct: 377 GARVSDFGGRSLSVLSSSTVVVNPDSPEAFKLRGWFDSEGQLLECASIS-DVRGGSASGV 435
Query: 471 NEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT-QS 529
N KT+ + K+E LG+ +K D+ + I ++ ++ Y ACP + CNKKV Q
Sbjct: 436 NTNWKTLYEAKSERLGQGDKADYFSCVGTIVHLRKENCMYQACP----SQDCNKKVIDQQ 491
Query: 530 GNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYEL 589
++C++C++E YR +L I D WVT FQES E ILG A L LK
Sbjct: 492 NGLYRCEKCDREFPNFKYRMMLLVTIADSLDYQWVTCFQESAEFILGQSATFLGELKD-- 549
Query: 590 QDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 649
+++ F E+ ++ FN Y F++++K E Y DE R+K T + VNY S+ L+ I +
Sbjct: 550 KNEQAFEEVFQNANFNTYEFKIRVKLETYNDESRIKATALDVKPVNYREYSKRLIASIRR 609
Query: 650 S 650
+
Sbjct: 610 N 610
>sp|Q92372|RFA1_SCHPO Replication factor A protein 1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=ssb1 PE=1 SV=1
Length = 609
Score = 318 bits (814), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 201/664 (30%), Positives = 340/664 (51%), Gaps = 70/664 (10%)
Query: 1 MPVNLTPNSISLINGGDVNS---KPLVQVMDIKLIGS-----TQERYRFLISDSVSTQHA 52
M L+ ++ +IN D +S P++QV+ +K + S +RYR ++SDS++ +
Sbjct: 1 MAERLSVGALRIINTSDASSFPPNPILQVLTVKELNSNPTSGAPKRYRVVLSDSINYAQS 60
Query: 53 MLATQLNDRVKTGQVKKGSVVQLIDYICSTVQNRKIIVVL--NMETIILDCEPIGNPKIF 110
ML+TQLN V +++KG+ VQL + + ++ RKI++VL N+ T + + IGNP
Sbjct: 61 MLSTQLNHLVAENKLQKGAFVQLTQFTVNVMKERKILIVLGLNVLTELGVMDKIGNPAGL 120
Query: 111 SESELTAQKTIPSNNLPQPVRVNNYSAPNSGTFNLQNSGTFNSQNPGSFSTPNSGTFRAP 170
+ Q Q NN SAP +G S + SF N+
Sbjct: 121 ETVDALRQ---------QQNEQNNASAPRTGI----------STSTNSFYGNNAAATAPA 161
Query: 171 NAGSIVRSFQPTVQPPYQPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAK 230
+ + N I PI L+PYQ +W I+ARVT K
Sbjct: 162 PPPMMKKP--------------------AAPNSLSTIIYPIEGLSPYQNKWTIRARVTNK 201
Query: 231 GDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPA 290
+++ ++N RG+GK+FS +LLD + GEIR T FN VD FY+I++ G VY IS+ + A
Sbjct: 202 SEVKHWHNQRGEGKLFSVNLLD-ESGEIRATGFNDQVDAFYDILQEGSVYYISRCRVNIA 260
Query: 291 QKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVI 350
+K + +++NE+E+ E + + E+ ++P +FSF + E+ ++++DVIG++
Sbjct: 261 KKQYTNVQNEYELMFERDTEIRKA-EDQTAVPVAKFSFVSLQEVGDVAKDAVIDVIGVLQ 319
Query: 351 SVNPSVPIL-RKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVL 409
+V P I R +R + + D +G + +TLWG K V +L
Sbjct: 320 NVGPVQQITSRATSRGFDKRDITIVDQTGYEMRVTLWG--------KTAIEFSVSEESIL 371
Query: 410 SVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKN---AATVSISREIAA 466
+ K KVNDF G+S+ + S+ + ++PD E+H L+ W+D G+ A IS ++
Sbjct: 372 AFKGVKVNDFQGRSLSMLTSSTMSVDPDIQESHLLKGWYDGQGRGQEFAKHSVISSTLST 431
Query: 467 GGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKV 526
G E K +++++ E LG SE PD+ +++ I +I+ + Y ACP CNKKV
Sbjct: 432 TGRSAE-RKNIAEVQAEHLGMSETPDYFSLKGTIVYIRKKNVSYPACPAA----DCNKKV 486
Query: 527 TQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLK 586
G W+C++CN+E D YRY++ + D TG W+ F + G+ I+ A EL L+
Sbjct: 487 FDQGGSWRCEKCNKEYDAPQYRYIITIAVGDHTGQLWLNVFDDVGKLIMHKTADELNDLQ 546
Query: 587 YELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDL 646
D+ F + + Y+F+ + K++ + E RV+ TV+ +Q+++ ES+ L++
Sbjct: 547 E--NDENAFMNCMAEACYMPYIFQCRAKQDNFKGEMRVRYTVMSINQMDWKEESKRLINF 604
Query: 647 ISKS 650
I +
Sbjct: 605 IESA 608
>sp|P22336|RFA1_YEAST Replication factor A protein 1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RFA1 PE=1 SV=1
Length = 621
Score = 309 bits (791), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 193/627 (30%), Positives = 331/627 (52%), Gaps = 73/627 (11%)
Query: 42 LISDSVSTQHAMLATQLNDRVKTGQVKKGSVVQLIDYICSTVQNRK--IIVVLNMETIIL 99
+ISD + A+L Q + ++ ++++G ++++I + V+ RK +++V + E +
Sbjct: 49 MISDGIYHMKALLRNQAASKFQSMELQRGDIIRVIIAEPAIVRERKKYVLLVDDFELVQS 108
Query: 100 DCEPIGNPKIFSESELTAQ--KTIPSNNLPQPVRV-NNYSAPNSGTFNLQNSGTFNSQNP 156
+ + F ++ + +T+ ++ V N +A N+G ++ +S + + N
Sbjct: 109 RADMVNQTSTFLDNYFSEHPNETLKDEDITDSGNVANQTNASNAGVPDMLHSNSNLNANE 168
Query: 157 GSFSTPNSGTFRAPNAGSIVRSFQPTVQPPYQPPPNFRNHGPILKNEAPARIIPIAALNP 216
F+ N PN + PI I L+P
Sbjct: 169 RKFANEN---------------------------PNSQKTRPIF---------AIEQLSP 192
Query: 217 YQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEV 276
YQ W IKARV+ KG+++ ++N RGDGK+F+ + LD+ GEIR T FN +F EI++
Sbjct: 193 YQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDT-SGEIRATAFNDFATKFNEILQE 251
Query: 277 GRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIES 336
G+VY +SK L+PA+ F +L + +E+ L+ + ++ C +E + +PK F+F + I++
Sbjct: 252 GKVYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVIEECFDESN-VPKTHFNFIKLDAIQN 310
Query: 337 AENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWG----DFCNK 392
E NS VDV+GI+ ++NP + + G + RR + + D SG S+ + LW DF
Sbjct: 311 QEVNSNVDVLGIIQTINPHFELTSRAGKKFDRRDITIVDDSGFSISVGLWNQQALDFNLP 370
Query: 393 EGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGG 452
EG V ++K +V DF GKS+ S+ L NP+ EA+ L+ W+DS G
Sbjct: 371 EGS------------VAAIKGVRVTDFGGKSLSMGFSSTLIPNPEIPEAYALKGWYDSKG 418
Query: 453 KNAATVSISREIAAGG-AKNEIHK------TVSQIKNEGLGRSEKPDWVTVRAFITFIKS 505
+NA +++ +E GG + + K T+++ + E LGRSEK D+ +V+A I+F+K
Sbjct: 419 RNANFITLKQEPGMGGQSAASLTKFIAQRITIARAQAENLGRSEKGDFFSVKAAISFLKV 478
Query: 506 DSFCYTACPLMIGDRQCNKKV-TQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWV 564
D+F Y AC + CNKKV Q W+C++C+ ++RY+L I D+T W+
Sbjct: 479 DNFAYPAC----SNENCNKKVLEQPDGTWRCEKCDTNNARPNWRYILTISIIDETNQLWL 534
Query: 565 TAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRV 624
T F + +++LG A L LK E D F +I +S N+Y FR++ +E+ Y D+ R+
Sbjct: 535 TLFDDQAKQLLGVDANTLMSLKEE--DPNEFTKITQSIQMNEYDFRIRAREDTYNDQSRI 592
Query: 625 KITVIRADQVNYSSESRYLLDLISKSF 651
+ TV +NY +E+ YL D +SK+
Sbjct: 593 RYTVANLHSLNYRAEADYLADELSKAL 619
>sp|Q24492|RFA1_DROME Replication protein A 70 kDa DNA-binding subunit OS=Drosophila
melanogaster GN=RpA-70 PE=1 SV=1
Length = 603
Score = 305 bits (780), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 209/656 (31%), Positives = 332/656 (50%), Gaps = 83/656 (12%)
Query: 3 VNLTPNSISLINGGDVNSKPLVQVMDIKLIGST--QERYRFLISDS-VSTQHAMLATQLN 59
+L+ I+ I G+V P++Q++ IK I S ERYR LISD +AMLA+QLN
Sbjct: 4 ASLSTGVIARIMHGEVVDAPVLQILAIKKINSAADSERYRILISDGKYFNSYAMLASQLN 63
Query: 60 DRVKTGQVKKGSVVQLIDYICSTV----QNRKIIVVLNMETIILDCEPIGNPKIFSESEL 115
G++++ ++VQL Y+ S V ++++++ + + NP +S++
Sbjct: 64 VMQHNGELEEFTIVQLDKYVTSLVGKDGAGKRVLIISELTVV--------NPGAEVKSKI 115
Query: 116 TAQKTIPSNNLPQPVRVNNYSAPNSGTFNLQNSGTFNSQNPGSFSTPNSGTFRAPNAGSI 175
+PV N + + P T NS
Sbjct: 116 G-----------EPVTYENAAKQDLA--------------PKPAVTSNS----------- 139
Query: 176 VRSFQPTVQPPYQPPPNFRNHGPILKNEA--PARIIPIAALNPYQGRWAIKARVTAKGDL 233
+P + P+ N+ I+ N + PI++L+PYQ +W IKARVT+K +
Sbjct: 140 --------KPIAKKEPSHNNNNNIVMNSSINSGMTHPISSLSPYQNKWVIKARVTSKSGI 191
Query: 234 RRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKN 293
R ++NARG+GK+FS DL+D + GEIR T F D+FY++I+V VY ISK LKPA K
Sbjct: 192 RTWSNARGEGKLFSMDLMD-ESGEIRATAFKEQCDKFYDLIQVDSVYYISKCQLKPANKQ 250
Query: 294 FNHLKNEWEIFLEATSTVDLCTE-EDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISV 352
++ L N +E+ + V LC + +DD IP+ +++ IS++ EN + VD IGI V
Sbjct: 251 YSSLNNAYEMTFSGETVVQLCEDTDDDPIPEIKYNLVPISDVSGMENKAAVDTIGICKEV 310
Query: 353 NPSVP-ILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSV 411
+ R E ++R + L D S ++ LTLWGD +Q PV+ V
Sbjct: 311 GELQSFVARTTNKEFKKRDITLVDMSNSAISLTLWGDDAVNFDGHVQ--------PVILV 362
Query: 412 KSGKVNDFSGKSIGTIPSTQLF-INPDFAEAHELREWFDSGGKNAATVSISREIAAGGAK 470
K ++N+F+G ++ + INPD EAH+LR WFD+GG ++ +S G
Sbjct: 363 KGTRINEFNGGKSLSLGGGSIMKINPDIPEAHKLRGWFDNGGGDSVANMVSARTGGGSFS 422
Query: 471 NEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSG 530
E T+ + LG +KPD+ +A + +K ++ Y ACP CNKKV G
Sbjct: 423 TE-WMTLKDARARNLGSGDKPDYFQCKAVVHIVKQENAFYRACP----QSDCNKKVVDEG 477
Query: 531 N-RWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYEL 589
N +++C++CN YR L+ I D T WV++F E GE++LG ++E + L
Sbjct: 478 NDQFRCEKCNALFPNFKYRLLINMSIGDWTSNRWVSSFNEVGEQLLGHTSQE---VGEAL 534
Query: 590 QDDVRFGEIIRSRV-FNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLL 644
++D E I S + F ++F+L+ K E+YGD R K+TV +N+ +++LL
Sbjct: 535 ENDPAKAEQIFSALNFTSHIFKLRCKNEVYGDMTRNKLTVQSVAPINHKEYNKHLL 590
>sp|Q23696|RFA1_CRIFA Replication factor A 51 kDa subunit OS=Crithidia fasciculata
GN=RPA1 PE=1 SV=1
Length = 467
Score = 209 bits (532), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 143/443 (32%), Positives = 242/443 (54%), Gaps = 39/443 (8%)
Query: 207 RIIPIAALNPY-QGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 265
+I PI +L P+ G+W I+ARV K D+R +N GK+FSF L+D + IR T FN
Sbjct: 8 QIQPIDSLTPFLGGKWWIRARVADKSDIRTWNKPTSQGKLFSFTLID-ESAAIRATVFND 66
Query: 266 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDD--SIPK 323
VD F ++ G+VY S G +K A + F+++ N++E+ + S V L ++ ++P
Sbjct: 67 AVDTFEPLVVNGQVYYFSGGQVKNANRRFSNVNNDYELTFDRASEVILARQDSSAAALPM 126
Query: 324 QQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKN-GMETQRRILNLKDTSGRSVE 382
Q+++F I ++ E S+VDV+G+V+ V+ I +K+ G E +R + + D S +VE
Sbjct: 127 QRYNFVPIELLKQREVGSLVDVLGVVLKVDEISSITQKSTGRELIKRNVKIGDMSA-AVE 185
Query: 383 LTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINP-DFAEA 441
+T W D E + V V++++ KV F G ++ + T++ +NP D +
Sbjct: 186 VTFWND----EAKAWNYPVGT----VVALRQLKVGSFDGVTLSSTYQTKIDVNPADLPDV 237
Query: 442 HELREWF-DSGGKNAATVS---ISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVR 497
+L W+ +GG N ++S + GG N K + +I++EG+GR KP++V VR
Sbjct: 238 KKLATWYVSTGGANVVSLSSQGLGAGGGGGGEGNRGRKYLDEIQSEGIGRGAKPEYVDVR 297
Query: 498 AFITFIKSDSFCYTACPLMIGDRQCNKKVTQS---GNRWQCDRCNQEIDECDYRYLLQAQ 554
+ K D+ Y ACP CNKKVT+ G+R++C++C+ + RYL+ Q
Sbjct: 298 CVPIYFKQDAQWYDACP------TCNKKVTEEGAQGDRFRCEKCDATVVPTQ-RYLVSIQ 350
Query: 555 IQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDD-VRFGEIIRSRVFNQYLFRLKI 613
+ D W+T F E+G E G A E LK Q+D + ++ ++R+ + RL++
Sbjct: 351 VTDNVSQVWLTLFNEAGVEFFGMEASE---LKRRAQEDPLYIAKLAQARMNRPVVMRLRV 407
Query: 614 KEE-----LYGDEQ-RVKITVIR 630
KEE + G+E R++++V+R
Sbjct: 408 KEETNANAMTGEESDRLRMSVVR 430
>sp|Q19537|RFA1_CAEEL Probable replication factor A 73 kDa subunit OS=Caenorhabditis
elegans GN=rpa-1 PE=1 SV=1
Length = 655
Score = 191 bits (485), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 168/624 (26%), Positives = 285/624 (45%), Gaps = 59/624 (9%)
Query: 39 YRFLISDSVSTQHAMLATQLNDRVK--TGQVKKGSVVQLIDY-ICSTVQNRKIIVVLNME 95
+R ISD V +A+++ ++D++K + +G+++ L + I + K
Sbjct: 62 FRIRISDGVFQYNALMSADIDDQIKREVEHLVEGTIIALTKFEIYDQGEGAK-------- 113
Query: 96 TIILDCEPIGNPKIFSESE--LTAQKTIPSNNLPQPVRVNNYSAPN-------SGTFNLQ 146
+C I KI S LT+ + P ++ +P Y PN +
Sbjct: 114 ----NCFLIKGYKILSRYHQVLTSPEVKPRSHSGKPDEHKGYR-PNIIIEDVWPEAEGMA 168
Query: 147 NSGTFNSQNPGSFSTPNSGTFRAPNAGSIVRSFQP-TVQPPYQPPPNFRNHGPILKNEAP 205
N NP + P S R+ P + PPP R +
Sbjct: 169 ADYQENMANPPAAKAPKR---EFGEEASYNRAAAPEATRARAVPPPARRTASNTERG--- 222
Query: 206 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 265
++PIA + PY + I V+ K ++R + + KVF+F++ DS+G IR T FN
Sbjct: 223 --VMPIAMVTPYVSNFKIHGMVSRKEEIRTF--PAKNTKVFNFEITDSNGDTIRCTAFNE 278
Query: 266 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQ 325
V + Y I Y +S GS+K A K FN+ +++EI L + S ++ E + PK
Sbjct: 279 VAESLYTTITENLSYYLSGGSVKQANKKFNNTGHDYEITLRSDSIIE-AGGELLAAPKLI 337
Query: 326 FSFRHISEIESAENNSIVDVIGIVISVNP-SVPILRKNGMETQRRILNLKDTSGRSVELT 384
+ EI + ++DV+ +V ++P + K G +R + L D SG V LT
Sbjct: 338 LKRVKLGEI-AGYAGQLIDVLVVVEKMDPEATEFTSKAGKSLIKREMELIDESGALVRLT 396
Query: 385 LWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGK-SIGTIPSTQLFINPDFAEAHE 443
LWGD K +VD V++ K +F+G S+GT +T++ P+ A E
Sbjct: 397 LWGDEATK------ALVDDYVQKVIAFKGVIPREFNGGFSLGTGSATRIISVPEIAGVSE 450
Query: 444 LREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGR-SEKPDWVTVRAFITF 502
L +W+ T + A G NE +T++ ++ G+ S+K D+ TV+A IT
Sbjct: 451 LYDWY---ANVKPTTEVKMMSQAAGGSNEAPRTIAGLQEMQFGKDSDKGDYATVKAMITR 507
Query: 503 IKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLT 562
+ + Y C C KK+ ++C++CN+ +++ + Y++Q ++ D+TG
Sbjct: 508 VNPTNALYRGC----ASEGCQKKLVGENGDYRCEKCNKNMNKFKWLYMMQFELSDETGQV 563
Query: 563 WVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQ 622
+VTAF +S +I+G A EL L E D+ + I F ++RL+ K + Y +E
Sbjct: 564 YVTAFGDSAAKIVGKSAAELGELHDESPDE--YNAIFERLQFVPKMWRLRCKMDSYNEEV 621
Query: 623 RVKITVIRADQVNYSSESRYLLDL 646
R K+TV D VN + +Y+ +L
Sbjct: 622 RQKMTVYGVDDVN---QDKYIENL 642
>sp|O97472|RFA1_CAEBR Probable replication factor A 73 kDa subunit OS=Caenorhabditis
briggsae GN=rpa-1 PE=3 SV=1
Length = 658
Score = 187 bits (474), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 143/506 (28%), Positives = 243/506 (48%), Gaps = 45/506 (8%)
Query: 170 PNAGSIVRSFQPTVQ-PPYQPPPNFRNHGPILKNEAPA---------------------- 206
P A SI FQ + PP P + G N PA
Sbjct: 162 PEAESITSEFQENMSNPPAAKMPKRESGGEASHNRVPAPEPHRSRAPPPPARRGPSNTER 221
Query: 207 RIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAV 266
+IPIA + PY + I V+ K D++ N + K+F+F++ DS+G IR T FN
Sbjct: 222 GVIPIAMVTPYVNNFRIHGMVSRKEDIK--NIPAKNMKIFNFEITDSNGDTIRCTAFNET 279
Query: 267 VDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQF 326
+ F+ I Y +S GS++ A K FN+ +++EI L S V+ E + PK
Sbjct: 280 AESFHSTITENLSYYLSGGSVRQANKKFNNTGHDYEITLRNDSVVE-AGGELLAAPKLNL 338
Query: 327 SFRHISEIESAENNSIVDVIGIVISVNP-SVPILRKNGMETQRRILNLKDTSGRSVELTL 385
++EI + ++DV+ IV ++ + K G +R + L D S V LTL
Sbjct: 339 KRVSLAEI-AGHCGEMIDVLVIVEKMDAEATEFTSKAGKTLTKREMELIDESQALVRLTL 397
Query: 386 WGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGK-SIGTIPSTQLFINPDFAEAHEL 444
WGD + ++ VD V++ K +F+G S+GT T++ P+ + EL
Sbjct: 398 WGD------EAIKANVDDYHGKVIAFKGVIPREFNGGYSLGTGSGTRIIPVPEISGVSEL 451
Query: 445 REWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGR-SEKPDWVTVRAFITFI 503
+W+ + ++ IS+ G +E +T++ ++ G+ S+K D+ +V+A IT I
Sbjct: 452 YDWYTTEKPHSELKLISQ---TSGGMSEAPRTIAGLQEMQFGKDSDKGDYASVKAMITRI 508
Query: 504 KSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTW 563
+S Y C C KKV +S ++C++CN+ +++ + Y++Q ++ D+TG +
Sbjct: 509 NPNSALYKGC----ASEGCQKKVIESDGEYRCEKCNKSMNKFKWLYMMQFELSDETGQVY 564
Query: 564 VTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQR 623
VTAF +S +++G A+E+ LK E ++ + F ++RL+ K E Y +E R
Sbjct: 565 VTAFGDSAAKVVGKTAQEVGDLKDENLNE--YNATFERLQFVPKMWRLRCKMETYNEEVR 622
Query: 624 VKITVIRADQVNYSSESRYLLDLISK 649
K+TV ++VN L +LI +
Sbjct: 623 QKMTVFSVEEVNQDKYIENLKELIEQ 648
>sp|Q6NSI4|CX057_HUMAN Uncharacterized protein CXorf57 OS=Homo sapiens GN=CXorf57 PE=1
SV=2
Length = 855
Score = 39.3 bits (90), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 64/152 (42%), Gaps = 24/152 (15%)
Query: 222 AIKARVTAKGDLRRYNNARGDGKVF----SFDLLDSDGGEIRVTCFNAVVDRFYEIIEVG 277
A+ R+ K LR Y + D K+ +F + G + V +NA+ +Y+ + VG
Sbjct: 236 ALLVRILHKSKLRYY--GKPDKKMIEPYQTFLEVADSSGTVSVIMWNALCPEWYKSLRVG 293
Query: 278 RVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDS----------------- 320
V L+ S+K + F + ++ ST+++C D
Sbjct: 294 LVLLLQDYSVKKSYP-FRIQPVPVDPQIKLISTMEICLNLRDPPTNIIIIPEKQVKPEWR 352
Query: 321 IPKQQFSFRHISEIESAENNSIVDVIGIVISV 352
+PK F SE++ N I DVIG+++ V
Sbjct: 353 LPKLNHRFTTRSELDDMPENCICDVIGLLVFV 384
>sp|F1QBY1|NIPLB_DANRE Nipped-B-like protein B OS=Danio rerio GN=nipblb PE=2 SV=1
Length = 2876
Score = 36.6 bits (83), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 49/123 (39%), Gaps = 17/123 (13%)
Query: 106 NPKIFSESELTAQKTIPSNNLPQPVRVNNYSAPNSGTFNLQNSGTFNSQNPGSF--STPN 163
NP +F E L Q IPS +PQ S S N Q + T P + +
Sbjct: 103 NPNVFREKSLMQQPMIPSYKMPQ------NSMHGSPASNYQQT-TITPSPPSRYVQTQAG 155
Query: 164 SGTFRAPNAGSIVRS-FQPTVQPP-----YQPPPNFRNHGPILKNEAPARIIPIAALNPY 217
SG+ P S V S + P Q P Y PP++ H PI + + I+P N +
Sbjct: 156 SGSRYMPQQNSPVPSPYAP--QSPAGYMQYSHPPSYPQHQPIQQVSVSSPIVPSGMRNIH 213
Query: 218 QGR 220
+
Sbjct: 214 DNK 216
>sp|B2GV47|CX057_RAT Uncharacterized protein CXorf57 homolog OS=Rattus norvegicus PE=2
SV=1
Length = 844
Score = 35.4 bits (80), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 64/148 (43%), Gaps = 22/148 (14%)
Query: 222 AIKARVTAKGDLRRY---NNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGR 278
A+ R+ K LR Y N + ++ DS G + V +NA+ +Y+ + VG
Sbjct: 236 ALLVRILHKSKLRYYGKPNKKMIEPYQTYLEVADS-SGMVSVIMWNALCPEWYKSLRVGL 294
Query: 279 VYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDS------IPKQQFS----- 327
+ L+ S+K + + + ++ ST+++C D IP++Q
Sbjct: 295 ILLLQDYSVKKSYP-LRIQPDPVDPQMKLISTMEICLNLRDPPTNIVIIPEKQLKSEWKL 353
Query: 328 ------FRHISEIESAENNSIVDVIGIV 349
F SE++ NSI DVIG++
Sbjct: 354 PKLINRFITRSELDDMPENSICDVIGML 381
>sp|Q6NZG4|NOXIN_MOUSE Nitric oxide-inducible gene protein OS=Mus musculus GN=Noxin PE=2
SV=1
Length = 898
Score = 34.7 bits (78), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 11/106 (10%)
Query: 498 AFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEID--ECDYRYLLQAQI 555
A + +++ +F Y +C ++C K+ R+ C +C D +YRY L ++
Sbjct: 10 ASVLAVQNSNFIYPSC------QRCFSKIILESKRFTCPKCGSSGDTGSTNYRYKLSLKV 63
Query: 556 QDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRS 601
+ + L ++T F + G A L+ L D ++ E + S
Sbjct: 64 AESSKLFFITVFGSCLDTFFGLTATGLHRY---LGDSIKNLETLDS 106
>sp|A7ZE07|MIAB_CAMC1 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Campylobacter concisus (strain 13826) GN=miaB PE=3
SV=1
Length = 433
Score = 33.9 bits (76), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Query: 554 QIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEI-----IRSRVFNQYL 608
QI D+T +T Q EIL E+ + + DV F E+ + R FN +L
Sbjct: 346 QIDDKTASERLTRLQNRHSEILD----EIVAAQKDKIFDVYFEELRANGGVAGRSFNNFL 401
Query: 609 FRLKIKEELYGDEQRVKIT 627
++ EEL G Q+ KIT
Sbjct: 402 VQVDGSEELLGTTQKAKIT 420
>sp|Q50308|RL14_MYCPN 50S ribosomal protein L14 OS=Mycoplasma pneumoniae (strain ATCC
29342 / M129) GN=rplN PE=3 SV=1
Length = 122
Score = 33.9 bits (76), Expect = 4.2, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Query: 25 QVMDIKLIGSTQERYRFLISDSVSTQHAMLATQLNDRVKTGQVKKGSVVQLIDYICSTVQ 84
QV IK++GST++RY FL ++ + D + +G VKKG V++ + Q
Sbjct: 18 QVGIIKVLGSTRKRYAFL--------GDVVVVSVKDAIPSGMVKKGQVLRAVIVRTKKGQ 69
Query: 85 NRK 87
RK
Sbjct: 70 QRK 72
>sp|P07223|MPI1_LYMST Molluscan insulin-related peptide 1 OS=Lymnaea stagnalis PE=1 SV=2
Length = 123
Score = 33.9 bits (76), Expect = 4.6, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 55 ATQLNDRVKTGQVKKGSVVQLIDYICSTVQNRKIIVVLNMETIILDCEPIGNPKIFSESE 114
A +NDR V ++ L+D+ CS+ N+ +V N ET + D P+ N K+ SES
Sbjct: 35 ACNINDRPHRRGVCGSALADLVDFACSS-SNQPAMVKRNAETDLDD--PLRNIKLSSESA 91
Query: 115 LT 116
LT
Sbjct: 92 LT 93
>sp|Q8C7X2|EMC1_MOUSE ER membrane protein complex subunit 1 OS=Mus musculus GN=Emc1 PE=1
SV=1
Length = 997
Score = 33.5 bits (75), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 9/119 (7%)
Query: 195 NHGPI--LKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLD 252
+HG + LKN A ++ A G + A +T + ++++ +A GDG V SF +
Sbjct: 307 HHGAVTLLKNFPQATLVSFAT----TGEKTVAAVMTCRTEVQKPVSA-GDGSVASFP--E 359
Query: 253 SDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTV 311
+ G + + CFN ++E GR L + S QK + ++FL+ +V
Sbjct: 360 TSGAQDSLACFNQTYTINLYLVETGRRLLDTSISFSLEQKGTRPEQLYIQVFLKKDDSV 418
>sp|P29535|1A14_SOLLC 1-aminocyclopropane-1-carboxylate synthase 4 OS=Solanum
lycopersicum GN=ACS4 PE=2 SV=1
Length = 476
Score = 33.5 bits (75), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 337 AENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSG 378
AEN VD+I I NP I +G+E+ RRI N +D G
Sbjct: 59 AENQLSVDLIEEWIKRNPKASICTNDGIESFRRIANFQDYHG 100
>sp|Q5U528|GTPBA_XENLA GTP-binding protein 10 OS=Xenopus laevis GN=gtpbp10 PE=2 SV=1
Length = 383
Score = 33.1 bits (74), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 272 EIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHI 331
E+++ V ++K L A + L + E T +L + D+ +P++Q F+HI
Sbjct: 267 ELLDKPAVLAVNKMDLPNADEKLGELLKQLE-----NPTGNLHSLPDELVPERQIEFKHI 321
Query: 332 SEIESAENNSIVDVIGIV 349
+ +A + D+IG +
Sbjct: 322 VPVSAATGQGLEDLIGCI 339
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 248,021,664
Number of Sequences: 539616
Number of extensions: 11037428
Number of successful extensions: 28898
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 28717
Number of HSP's gapped (non-prelim): 97
length of query: 653
length of database: 191,569,459
effective HSP length: 124
effective length of query: 529
effective length of database: 124,657,075
effective search space: 65943592675
effective search space used: 65943592675
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)