Query 006263
Match_columns 653
No_of_seqs 264 out of 894
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 20:20:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006263.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006263hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gop_C Putative uncharacterize 100.0 1.9E-96 6E-101 812.5 50.2 433 207-651 2-444 (444)
2 1jmc_A Protein (replication pr 100.0 3.4E-54 1.2E-58 439.6 29.5 240 205-454 5-245 (246)
3 1l1o_C Replication protein A 7 100.0 4.3E-46 1.5E-50 360.6 21.5 177 470-652 3-180 (181)
4 3u50_C Telomerase-associated p 100.0 1.7E-41 5.9E-46 321.2 14.8 155 472-638 6-172 (172)
5 1ynx_A Replication factor-A pr 100.0 3.9E-31 1.3E-35 236.7 14.0 110 206-316 2-111 (114)
6 2b29_A Replication protein A 7 100.0 8.7E-29 3E-33 222.7 14.0 111 1-111 4-122 (123)
7 3dm3_A Replication factor A; p 99.4 2.5E-13 8.5E-18 118.9 10.0 97 207-315 4-101 (105)
8 1o7i_A SSB, SSO2364, single st 99.4 5.8E-13 2E-17 119.6 12.4 109 208-337 2-110 (119)
9 3e0e_A Replication protein A; 99.4 1.1E-12 3.7E-17 113.4 9.4 93 209-314 3-96 (97)
10 2k50_A Replication factor A re 99.4 3.2E-12 1.1E-16 114.1 11.2 106 324-440 3-110 (115)
11 1o7i_A SSB, SSO2364, single st 99.3 3E-12 1E-16 114.9 9.7 103 328-444 2-107 (119)
12 3dm3_A Replication factor A; p 99.3 2E-11 6.8E-16 106.8 10.9 93 327-433 4-98 (105)
13 2k50_A Replication factor A re 99.2 7.5E-11 2.6E-15 105.1 10.6 101 207-316 6-107 (115)
14 2k75_A Uncharacterized protein 99.1 6.2E-10 2.1E-14 97.5 11.0 92 207-315 2-94 (106)
15 3e0e_A Replication protein A; 99.0 3.3E-09 1.1E-13 91.4 11.0 90 330-433 4-94 (97)
16 1wjj_A Hypothetical protein F2 98.8 2.6E-08 8.7E-13 91.6 12.9 98 206-315 14-121 (145)
17 2k75_A Uncharacterized protein 98.8 1.9E-08 6.7E-13 88.0 10.2 91 326-434 1-92 (106)
18 1jmc_A Protein (replication pr 98.6 3.4E-06 1.2E-10 84.9 20.6 177 327-574 7-192 (246)
19 2kbn_A Conserved protein; nucl 98.6 5.4E-07 1.8E-11 79.2 12.7 92 207-315 4-95 (109)
20 1wjj_A Hypothetical protein F2 98.4 4.4E-07 1.5E-11 83.3 7.8 101 323-436 11-121 (145)
21 1xjv_A Protection of telomeres 98.4 1E-05 3.6E-10 83.6 18.8 226 206-449 4-288 (294)
22 2kbn_A Conserved protein; nucl 98.3 2.5E-06 8.7E-11 74.9 9.6 90 328-436 5-95 (109)
23 1jb7_A Telomere-binding protei 98.3 0.00025 8.7E-09 78.0 27.4 338 204-584 34-453 (495)
24 4gop_C Putative uncharacterize 98.2 2.2E-05 7.7E-10 85.9 16.8 177 328-575 3-188 (444)
25 1ynx_A Replication factor-A pr 98.1 1.6E-05 5.5E-10 70.3 11.1 101 327-437 3-111 (114)
26 1xjv_A Protection of telomeres 98.0 6.7E-05 2.3E-09 77.5 13.6 143 325-504 3-167 (294)
27 1qzg_A Protection of telomeres 97.6 0.00025 8.5E-09 67.5 9.8 89 326-422 27-120 (187)
28 3u58_A Tetrahymena TEB1 AB; te 97.5 0.017 5.9E-07 51.1 19.0 158 209-392 12-173 (213)
29 1miu_A BRCA2, breast cancer ty 97.4 0.0017 5.9E-08 73.4 14.5 172 256-449 525-708 (738)
30 3u4v_A Telomerase-associated p 97.1 0.0053 1.8E-07 49.6 10.6 88 209-307 16-105 (117)
31 1jb7_A Telomere-binding protei 97.0 0.0044 1.5E-07 68.1 12.6 89 323-422 33-133 (495)
32 1se8_A Single-strand binding p 94.8 0.82 2.8E-05 46.9 16.6 181 218-421 5-212 (301)
33 3mxn_A RECQ-mediated genome in 94.3 0.056 1.9E-06 49.5 5.7 89 549-647 60-155 (157)
34 2fxq_A Single-strand binding p 93.9 1.4 4.7E-05 44.2 15.7 178 218-420 5-207 (264)
35 3ebe_A Protein MCM10 homolog; 93.3 0.56 1.9E-05 45.1 11.0 83 204-291 34-126 (200)
36 4hik_A Protection of telomeres 92.0 0.7 2.4E-05 41.9 9.2 111 331-447 5-136 (143)
37 3u4z_A Telomerase-associated p 91.9 4 0.00014 32.5 12.7 84 215-314 9-93 (109)
38 3kdf_D Replication protein A 3 91.5 0.47 1.6E-05 42.4 7.6 70 341-425 32-102 (132)
39 3ebe_A Protein MCM10 homolog; 91.1 0.71 2.4E-05 44.3 8.7 81 326-417 36-123 (200)
40 4gop_B Putative uncharacterize 90.3 0.54 1.9E-05 42.2 6.7 71 341-426 37-108 (136)
41 3i7f_A Aspartyl-tRNA synthetas 89.3 1.9 6.4E-05 47.8 11.3 99 206-314 48-153 (548)
42 1txy_A Primosomal replication 88.7 0.98 3.3E-05 38.6 6.8 66 218-286 2-78 (104)
43 3en2_A Probable primosomal rep 88.4 2.6 8.9E-05 35.8 9.2 65 218-286 2-77 (101)
44 3kf6_A Protein STN1; OB fold, 86.9 6.1 0.00021 36.4 11.5 71 341-425 48-119 (159)
45 1eov_A ASPRS, aspartyl-tRNA sy 86.7 2.7 9.2E-05 46.0 10.6 97 208-314 23-130 (487)
46 3eiv_A Single-stranded DNA-bin 86.3 2.9 9.8E-05 40.0 9.2 65 218-285 4-82 (199)
47 4gop_B Putative uncharacterize 86.1 2 7E-05 38.3 7.7 77 551-651 55-132 (136)
48 3fhw_A Primosomal replication 85.8 5.3 0.00018 34.7 9.9 67 218-288 1-78 (115)
49 2vw9_A Single-stranded DNA bin 85.1 2.6 8.8E-05 37.7 7.8 65 218-285 2-78 (134)
50 2pi2_A Replication protein A 3 85.1 1.6 5.3E-05 44.0 7.1 70 342-426 73-143 (270)
51 3ulp_A Single-strand binding p 84.1 2.2 7.4E-05 37.6 6.8 65 218-285 6-84 (124)
52 3tqy_A Single-stranded DNA-bin 83.6 2 6.8E-05 39.6 6.6 66 217-285 7-85 (158)
53 3k8a_A Putative primosomal rep 83.5 7.3 0.00025 33.1 9.6 63 219-286 8-81 (103)
54 3u58_A Tetrahymena TEB1 AB; te 83.1 8.8 0.0003 33.9 10.0 85 214-314 126-211 (213)
55 3vdy_A SSB, single-stranded DN 82.7 3.4 0.00012 35.8 7.4 67 217-286 4-80 (116)
56 3koj_A Uncharacterized protein 82.5 5.1 0.00018 34.4 8.3 67 217-285 10-82 (108)
57 1z9f_A Single-strand binding p 82.3 2.4 8.2E-05 38.8 6.5 67 216-285 14-92 (153)
58 3rn5_A Interferon-inducible pr 81.2 37 0.0013 32.0 18.8 175 223-432 15-195 (208)
59 3kdf_D Replication protein A 3 80.5 7.4 0.00025 34.4 9.0 75 551-650 50-126 (132)
60 1v1q_A Primosomal replication 80.2 2.9 9.9E-05 37.4 6.1 65 219-286 20-95 (134)
61 3afp_A Single-stranded DNA-bin 79.3 4.6 0.00016 37.5 7.5 65 218-285 4-82 (168)
62 3m4p_A Ehasnrs, asparaginyl-tR 78.8 8.9 0.0003 41.5 10.6 97 208-314 19-122 (456)
63 1qzg_A Protection of telomeres 77.1 2.4 8.4E-05 40.0 4.8 72 220-293 44-120 (187)
64 1eqq_A Single stranded DNA bin 76.4 2.1 7.2E-05 40.3 4.2 65 218-285 6-83 (178)
65 1qvc_A Single stranded DNA bin 76.3 4.7 0.00016 36.5 6.4 65 218-285 5-82 (145)
66 4dam_A Single-stranded DNA-bin 75.9 4.2 0.00014 36.0 5.8 63 218-284 15-91 (128)
67 3bju_A Lysyl-tRNA synthetase; 75.6 9 0.00031 42.2 9.7 79 219-314 56-141 (521)
68 3pgz_A Single-stranded DNA-bin 74.5 4.9 0.00017 38.2 6.2 65 218-285 26-104 (193)
69 4dni_A Fusion protein of RNA-e 74.1 72 0.0025 31.5 17.3 175 217-420 29-229 (257)
70 1x54_A Asparaginyl-tRNA synthe 74.1 11 0.00037 40.6 9.6 89 211-314 7-101 (434)
71 1wyd_A Hypothetical aspartyl-t 72.7 9.2 0.00031 41.0 8.6 80 219-314 17-98 (429)
72 3f2b_A DNA-directed DNA polyme 72.0 7.5 0.00026 46.2 8.3 73 207-284 6-80 (1041)
73 1c0a_A Aspartyl tRNA synthetas 72.0 16 0.00056 40.7 10.7 86 219-314 16-105 (585)
74 3nem_A Aspartyl-tRNA synthetas 71.9 14 0.00048 39.7 9.9 90 210-314 6-101 (438)
75 4hik_A Protection of telomeres 71.4 11 0.00039 33.9 7.6 52 257-314 66-123 (143)
76 2pi2_A Replication protein A 3 70.2 12 0.00041 37.4 8.4 75 551-650 90-166 (270)
77 1n9w_A Aspartyl-tRNA synthetas 69.9 15 0.00051 39.3 9.5 82 211-314 5-88 (422)
78 3k81_C MP18 RNA editing comple 68.0 7.8 0.00027 35.8 5.8 63 217-284 21-97 (164)
79 4ex5_A Lysine--tRNA ligase; st 68.0 15 0.00053 40.3 9.3 79 219-314 87-169 (529)
80 1l0w_A Aspartyl-tRNA synthetas 66.7 19 0.00064 40.2 9.7 86 219-314 17-103 (580)
81 2xgt_A Asparaginyl-tRNA synthe 66.4 15 0.00053 39.3 8.8 93 210-313 2-96 (435)
82 3lgj_A Single-stranded DNA-bin 66.0 7.9 0.00027 36.0 5.5 65 218-285 23-101 (169)
83 3ull_A DNA binding protein; DN 63.5 8 0.00027 34.2 4.9 66 217-285 13-97 (132)
84 1se8_A Single-strand binding p 63.4 11 0.00037 38.5 6.5 65 217-285 128-204 (301)
85 1ffk_W Ribosomal protein L37AE 62.8 3.6 0.00012 32.7 2.1 33 512-550 29-63 (73)
86 3koj_A Uncharacterized protein 62.5 33 0.0011 29.2 8.4 71 341-421 12-90 (108)
87 3a74_A Lysyl-tRNA synthetase; 61.6 27 0.00093 38.0 9.7 79 219-314 57-139 (493)
88 3k7u_C MP18 RNA editing comple 59.0 29 0.00098 31.4 7.8 63 217-284 5-81 (148)
89 3cc2_Z 50S ribosomal protein L 58.6 4.1 0.00014 35.2 1.9 25 512-542 62-88 (116)
90 3au7_A TIAS, putative uncharac 57.7 37 0.0013 35.8 9.5 68 209-285 276-345 (402)
91 1e1o_A Lysyl-tRNA synthetase, 56.7 32 0.0011 37.6 9.2 79 219-314 65-148 (504)
92 3en2_A Probable primosomal rep 55.4 89 0.003 26.2 9.7 71 343-424 5-87 (101)
93 1vq8_Z 50S ribosomal protein L 54.4 5 0.00017 32.7 1.7 25 512-542 29-55 (83)
94 3tqy_A Single-stranded DNA-bin 51.2 46 0.0016 30.3 7.9 71 342-420 10-92 (158)
95 3j20_Y 30S ribosomal protein S 51.0 9.2 0.00031 28.0 2.5 26 510-541 19-46 (50)
96 3izc_m 60S ribosomal protein R 50.7 6.3 0.00022 32.6 1.7 26 512-543 38-65 (92)
97 3jyw_9 60S ribosomal protein L 50.2 6.7 0.00023 31.0 1.7 27 512-544 28-56 (72)
98 2fxq_A Single-strand binding p 49.7 23 0.00078 35.2 6.1 64 218-285 128-200 (264)
99 1miu_A BRCA2, breast cancer ty 48.5 5.9 0.0002 45.0 1.6 67 9-75 215-297 (738)
100 2pk7_A Uncharacterized protein 48.1 7.2 0.00025 30.6 1.6 26 511-542 9-36 (69)
101 2js4_A UPF0434 protein BB2007; 47.9 7.4 0.00025 30.6 1.7 27 510-542 8-36 (70)
102 1pft_A TFIIB, PFTFIIBN; N-term 47.4 12 0.00042 27.0 2.7 26 512-543 7-35 (50)
103 2jr6_A UPF0434 protein NMA0874 47.4 7.3 0.00025 30.5 1.5 27 510-542 8-36 (68)
104 3eiv_A Single-stranded DNA-bin 47.0 64 0.0022 30.6 8.4 73 341-421 5-90 (199)
105 2hf1_A Tetraacyldisaccharide-1 46.8 7.5 0.00025 30.4 1.5 29 508-542 6-36 (68)
106 3j21_i 50S ribosomal protein L 46.7 7 0.00024 31.8 1.4 26 512-543 37-64 (83)
107 3vdy_A SSB, single-stranded DN 46.6 64 0.0022 27.5 7.7 71 342-420 7-86 (116)
108 2jne_A Hypothetical protein YF 46.5 9.4 0.00032 31.8 2.1 25 511-541 33-57 (101)
109 3k8a_A Putative primosomal rep 46.2 93 0.0032 26.1 8.5 71 342-424 9-91 (103)
110 1gm5_A RECG; helicase, replica 45.6 13 0.00043 43.2 3.8 72 204-284 152-225 (780)
111 4dni_A Fusion protein of RNA-e 45.3 38 0.0013 33.5 6.8 61 218-284 146-221 (257)
112 2vw9_A Single-stranded DNA bin 44.6 60 0.002 28.6 7.4 35 380-420 50-85 (134)
113 3nbi_A RECQ-mediated genome in 44.1 56 0.0019 31.4 7.6 39 37-77 135-174 (216)
114 2kpi_A Uncharacterized protein 43.8 11 0.00037 28.3 1.9 27 510-542 10-38 (56)
115 3fhw_A Primosomal replication 43.0 79 0.0027 27.2 7.7 61 343-414 4-75 (115)
116 3j21_g 50S ribosomal protein L 42.4 9.5 0.00033 28.0 1.4 25 510-542 14-38 (51)
117 1txy_A Primosomal replication 41.6 68 0.0023 26.8 7.0 63 343-414 5-77 (104)
118 1v1q_A Primosomal replication 41.5 79 0.0027 28.0 7.6 65 342-414 21-94 (134)
119 3iz5_m 60S ribosomal protein L 41.5 9.4 0.00032 31.6 1.4 26 512-543 38-65 (92)
120 3rlo_A Gamma-interferon-induci 41.2 2.3E+02 0.0079 26.6 18.9 174 223-432 12-192 (204)
121 2jny_A Uncharacterized BCR; st 40.9 10 0.00036 29.5 1.5 27 510-542 10-38 (67)
122 2cr8_A MDM4 protein; ZF-ranbp 40.1 7.3 0.00025 28.4 0.4 17 532-549 11-27 (53)
123 2hpi_A DNA polymerase III alph 39.7 19 0.00066 43.5 4.3 77 328-417 1026-1106(1220)
124 4a17_Y RPL37A, 60S ribosomal p 39.2 11 0.00037 31.9 1.4 26 512-543 38-65 (103)
125 2jrp_A Putative cytoplasmic pr 38.7 15 0.00052 29.6 2.2 20 521-540 7-26 (81)
126 3u50_C Telomerase-associated p 38.6 25 0.00086 32.6 4.0 29 245-274 76-104 (172)
127 2i46_A Adrenocortical dysplasi 38.2 1.2E+02 0.0041 26.7 7.9 82 19-100 20-126 (161)
128 1l1o_C Replication protein A 7 36.7 30 0.001 32.3 4.3 27 244-271 79-105 (181)
129 2hpi_A DNA polymerase III alph 36.4 18 0.00063 43.7 3.4 74 209-288 1027-1106(1220)
130 2xvs_A Tetratricopeptide repea 34.2 61 0.0021 29.8 5.7 75 206-290 61-136 (166)
131 2akl_A PHNA-like protein PA012 32.9 14 0.00049 32.4 1.2 27 510-542 27-54 (138)
132 2vv6_A FIXL, sensor protein FI 32.7 39 0.0013 27.4 4.1 30 553-584 6-35 (119)
133 2k4x_A 30S ribosomal protein S 30.6 24 0.00084 26.2 2.0 25 511-541 19-45 (55)
134 1wg2_A Zinc finger (AN1-like) 29.1 11 0.00039 28.9 -0.0 28 512-549 17-44 (64)
135 2i5o_A DNA polymerase ETA; zin 28.9 18 0.00062 24.9 1.0 14 530-543 7-20 (39)
136 1wfh_A Zinc finger (AN1-like) 28.8 11 0.00038 29.0 -0.2 22 512-542 17-38 (64)
137 3u6p_A Formamidopyrimidine-DNA 28.7 20 0.00068 35.9 1.6 24 511-540 246-273 (273)
138 3u5c_f 40S ribosomal protein S 28.3 30 0.001 31.4 2.6 41 492-542 104-148 (152)
139 1ee8_A MUTM (FPG) protein; bet 28.0 22 0.00075 35.4 1.8 25 511-541 236-264 (266)
140 1wfp_A Zinc finger (AN1-like) 27.9 11 0.00039 29.8 -0.2 28 512-549 27-54 (74)
141 1k82_A Formamidopyrimidine-DNA 27.6 21 0.00073 35.6 1.6 24 511-540 241-268 (268)
142 2xzf_A Formamidopyrimidine-DNA 27.5 21 0.00073 35.6 1.6 24 511-540 243-270 (271)
143 3cng_A Nudix hydrolase; struct 27.4 76 0.0026 29.1 5.5 44 511-562 4-53 (189)
144 3lgj_A Single-stranded DNA-bin 27.4 1.7E+02 0.0058 26.8 7.7 36 380-421 72-109 (169)
145 1k3x_A Endonuclease VIII; hydr 27.3 22 0.00074 35.4 1.6 23 512-540 236-262 (262)
146 1d06_A Nitrogen fixation regul 26.7 50 0.0017 27.3 3.8 30 553-584 29-58 (130)
147 2c6a_A Ubiquitin-protein ligas 26.4 12 0.0004 26.8 -0.4 9 532-540 13-21 (46)
148 3ulp_A Single-strand binding p 26.3 3E+02 0.01 23.4 9.3 37 380-422 55-93 (124)
149 1z9f_A Single-strand binding p 25.7 1.6E+02 0.0055 26.5 7.1 35 380-420 64-99 (153)
150 1ll8_A PAS kinase; PAS domain, 23.9 38 0.0013 27.2 2.3 30 553-584 11-41 (114)
151 3mfx_A Sensory BOX/ggdef famil 23.7 60 0.0021 27.8 3.7 30 553-584 20-49 (129)
152 1eqq_A Single stranded DNA bin 22.7 1.1E+02 0.0037 28.4 5.4 35 380-420 55-90 (178)
153 3k7u_C MP18 RNA editing comple 22.3 4.2E+02 0.014 23.6 9.2 70 342-421 8-90 (148)
154 4gs3_A Single-stranded DNA-bin 22.2 70 0.0024 27.2 3.6 63 219-288 12-79 (107)
155 3afp_A Single-stranded DNA-bin 22.2 2E+02 0.0067 26.3 7.1 71 342-420 6-89 (168)
156 3w0f_A Endonuclease 8-like 3; 21.7 40 0.0014 33.9 2.3 25 512-542 253-283 (287)
157 1dl6_A Transcription factor II 21.3 49 0.0017 24.7 2.2 26 512-543 13-41 (58)
158 3a0s_A Sensor protein; PAS-fol 20.9 85 0.0029 22.9 3.8 30 553-584 5-34 (96)
159 1wfl_A Zinc finger protein 216 20.7 23 0.00078 28.1 0.2 22 512-542 27-48 (74)
160 3pgz_A Single-stranded DNA-bin 20.5 3E+02 0.01 25.8 8.0 35 380-420 75-111 (193)
161 3b33_A Sensor protein; structu 20.2 76 0.0026 25.2 3.5 30 553-584 20-49 (115)
No 1
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=100.00 E-value=1.9e-96 Score=812.51 Aligned_cols=433 Identities=39% Similarity=0.704 Sum_probs=403.4
Q ss_pred cceeccccCCCCCceEEEEEEEeeccccccccCCCCceeEEEEEEeCCCCeEEEEEchhHHHHHHhhcccCcEEEEeceE
Q 006263 207 RIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGS 286 (653)
Q Consensus 207 ~~~pI~~L~p~~~~w~I~~RV~~k~~ir~~~~~~g~gk~f~~~L~D~~g~~I~at~f~~~~~kf~~~l~eG~vy~is~~~ 286 (653)
+++||++|+||+++|+|+|||++||++|+|++++|+|++|+|+|+|+.| +|+||+|++.+++|++.|++|+||+|++|.
T Consensus 2 ~~~~I~~L~p~~~~w~I~~rV~~k~~ir~~~~~~~~g~~~~~~L~De~G-~I~at~~~~~~~~f~~~l~eG~vy~Is~~~ 80 (444)
T 4gop_C 2 PIYPIEGLSPYQNRWTIKARVTSKSDIRHWSNQRGEGKLFSVNLLDDSG-EIKATGFNDAVDRFYPLLQENHVYLISKAR 80 (444)
T ss_dssp -CCCSTTCCTTCCSCEEEEECCEECCCEEEECSSCEEEEEEEEEECSSC-EEEEEEETHHHHHHTTTCCTTCEEEEESCE
T ss_pred CceeHHHCCCCCcceEEEEEEEEccCcceecCCCCCceEEEEEEEcCCC-EEEEEEeHHHHHHHHHheecCCEEEEcCCE
Confidence 5889999999999999999999999999999999999999999999655 999999999999999999999999999999
Q ss_pred EecCCCcccCCCCceEEEeccccEEEeccCCCCCCCcccceecchhhhhhcccCccccEEEEEEEecCceeEEec-CCce
Q 006263 287 LKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRK-NGME 365 (653)
Q Consensus 287 V~~a~~~f~~~~~~yei~f~~~T~I~~~~d~~~~iP~~~f~f~~i~~i~~~~~~~~vDVIGvV~~v~~~~~i~~k-~g~~ 365 (653)
|++++++|++++|+|||.|+.+|+|++|++ +..||.+.|+|++|++|.+++.+.+|||||+|++|+++.+|++| +|++
T Consensus 81 V~~~~~~y~~~~~~~ei~~~~~T~V~~~~d-~~~iP~~~~~f~~i~~i~~~~~~~~vDViG~V~~v~~~~~i~~k~~g~~ 159 (444)
T 4gop_C 81 VNIAKKQFSNLQNEYEITFENSTEIEECTD-ATDVPEVKYEFVRINELESVEANQQCDVIGILDSYGELSEIVSKASQRP 159 (444)
T ss_dssp EEECCGGGCSCCCSEEEEECTTCEEEECSC-CSSSCCCCCCBCCGGGGGGSCSSCCCBEEEEEEEECCCEEECCTTTCSC
T ss_pred EEecCCccccCCCCEEEEEcCCcEEEEccC-cccCcceeecccCHHHHhccCCCCceEEEEEEEEcCCcEEEEEccCCce
Confidence 999999999999999999999999999964 45799999999999999998889999999999999999999988 7999
Q ss_pred eeEEEEEEEeCCCCEEEEEEccchhhhhhhhHHHhhccCCCcEEEEEeeEeecCCCceeccccceEEEEcCChHHHHHHH
Q 006263 366 TQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELR 445 (653)
Q Consensus 366 ~~kr~i~l~D~s~~~i~vtLWg~~A~~~~~~l~~~~~~~~~~Vvaik~~rV~~f~G~sLs~~~~S~i~inPdipe~~~l~ 445 (653)
..+|+|+|.|+||.+|+|||||++|..|... .+ ...+|||+|+++||++|+|++||+.++|+|++|||+||+++|+
T Consensus 160 ~~kr~i~L~D~sg~~i~~tLWg~~A~~f~~~---~~-~~~~~VV~i~~~kV~~f~G~~ls~~~~s~i~inPdipea~~l~ 235 (444)
T 4gop_C 160 VQKRELTLVDQGNRSVKLTLWGKTAETFPTN---AG-VDEKPVLAFKGVKVGDFGGRSLSMFSSSTMLINPDITESHVLR 235 (444)
T ss_dssp EEEEEEEEECTTCBEEEEEEEHHHHHTSTTS---TT-SSSCCEEEEESCEEECTTSSEEECCTTCEEEESCSSHHHHHHH
T ss_pred eeEEEEEEEeCCCCEEEEEEEhhhhhhhhhh---hc-cCCCCEEEEEeEEEeecCCeEEeccccceEEECCCCHHHHHHH
Confidence 9999999999999999999999999876421 11 3578999999999999999999999999999999999999999
Q ss_pred HHHhcCCCccceeeccccc-------c-cCCCCcchhccHHhhhhcCCCCCCCCcEEEEEEEEEEEeCCceEEecCCCCc
Q 006263 446 EWFDSGGKNAATVSISREI-------A-AGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMI 517 (653)
Q Consensus 446 ~w~~~~g~~~~~~sls~~~-------~-~~~~~~~~~kti~~i~~~~lg~~~~~~~~~v~atI~~i~~d~~~Y~aC~~~~ 517 (653)
+||+++|.+..+.+++... . +++.....++||+||+++++|.+++|+||.|+|+|++|+.++|||+|||++
T Consensus 236 ~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kti~~i~~~~~g~~~~~~~~~v~atI~~i~~~~~~Y~aC~~~- 314 (444)
T 4gop_C 236 GWYDNDGAHAQFQPYTNGGVGGGAMGGGGAGANMAERRTIVQVKDENLGMSEKPDYFNVRATVVYIKQENLYYTACASE- 314 (444)
T ss_dssp HHHHHHTTTSCCBCCCCCC---------CTTCCSSEECCHHHHHHTTTTSSSSCEEEEEEEEEEEECCTTCEEEECCST-
T ss_pred HHHHcCCCCcccccccccccccccccccccccccccceeHHHHhhhccCCCCCCcEEEEEEEEEEEcCCceEEccCCcc-
Confidence 9999999988888877543 1 122355688999999999999999999999999999999999999999944
Q ss_pred CcccccceeeecCc-eeecccCccccCCceEEEEEEEEEEeCCCeEEEEEechhhhhhhCCCHHHHHHHhhccCChhHHH
Q 006263 518 GDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFG 596 (653)
Q Consensus 518 ~~~~C~KKv~~~~~-~~~C~kC~~~~~~~~~rY~l~~~i~D~Tg~~~~~~F~~~ae~llG~sA~el~~~~~e~~d~~~~~ 596 (653)
.|+|||.+.++ .|+|++|++.+++|.|||+|++.|+|+||++|+++||+.|++|||++|+||.+++ ++|++.|+
T Consensus 315 ---~C~kkv~~~~~g~~~C~~C~~~~~~~~~ry~l~~~v~D~Tg~~~~~~F~~~a~~llG~sa~el~~~~--~~d~~~~~ 389 (444)
T 4gop_C 315 ---GCNKKVNLDHENNWRCEKCDRSYATPEYRYILSTNVADATGQMWLSGFNEDATQLIGMSAGELHKLR--EESESEFS 389 (444)
T ss_dssp ---TCCCBEEECTTSCEEETTTTEEESSCEEEECEEEEEEETTEEEEEEECHHHHHHHTTSCHHHHHHHH--TTCHHHHH
T ss_pred ---cCCCccccCCCccEECCCCCCcCccccEEEEEEEEEEeCCCCEEEEEehHHHHHHcCCCHHHHHHHH--hcChHHHH
Confidence 59999987654 8999999999999999999999999999999999999999999999999999999 67899999
Q ss_pred HHHHHhcCceEEEEEEEeeeccCceeeEEEEEEEeecCChHHHHHHHHHHHHhhh
Q 006263 597 EIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKSF 651 (653)
Q Consensus 597 ~~~~~~~~k~~~f~v~~k~~~y~~e~r~~~~v~~~~~vd~~~e~~~ll~~i~~~~ 651 (653)
++|+++.|++|.|+|++++++|+||.|+||+|++++|+||++|+++||++|++||
T Consensus 390 ~~~~~~~~k~~~f~~~~k~~~y~~~~r~~~~v~~~~~~d~~~~~~~l~~~i~~~~ 444 (444)
T 4gop_C 390 AALHRAANRMYMFNCRAKMDTFNDTARVRYTISRAAPVDFAKAGMELVDAIRAYM 444 (444)
T ss_dssp HHHHTTSSCEEEEEEEEEEEEETTEEEEEEEEEEEEECCHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhCcEEEEEEEEEeeeeCCeeEEEEEEEEeeeCCHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999986
No 2
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=100.00 E-value=3.4e-54 Score=439.59 Aligned_cols=240 Identities=43% Similarity=0.796 Sum_probs=225.7
Q ss_pred CCcceeccccCCCCCceEEEEEEEeeccccccccCCCCceeEEEEEEeCCCCeEEEEEchhHHHHHHhhcccCcEEEEec
Q 006263 205 PARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISK 284 (653)
Q Consensus 205 ~~~~~pI~~L~p~~~~w~I~~RV~~k~~ir~~~~~~g~gk~f~~~L~D~~g~~I~at~f~~~~~kf~~~l~eG~vy~is~ 284 (653)
++.++||++|+||+++|+|+|||++||++|+|++++++|++|+|+|+|++| +|+|++|++.+++|++.|++|+||+|++
T Consensus 5 ~~~~~~I~~L~p~~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G-~I~at~~~~~~~~~~~~l~~G~vy~i~~ 83 (246)
T 1jmc_A 5 QSKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESG-EIRATAFNEQVDKFFPLIEVNKVYYFSK 83 (246)
T ss_dssp --CBCCGGGCCTTCCCCEEEEEEEEECCCEEEECSSCEEEEEEEEEECSSC-EEEEEEEHHHHHHHGGGCCTTCEEEEEC
T ss_pred ccceEEHHHCCCCCCceEEEEEEEEecccceeeCCCCCceEEEEEEECCCC-eEEEEEChHHHHHhhhhcccCCEEEECC
Confidence 346899999999999999999999999999999999999999999999777 9999999999999999999999999999
Q ss_pred eEEecCCCcccCCCCceEEEeccccEEEeccCCCCCCCcccceecchhhhhhcccCccccEEEEEEEecCceeEEec-CC
Q 006263 285 GSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRK-NG 363 (653)
Q Consensus 285 ~~V~~a~~~f~~~~~~yei~f~~~T~I~~~~d~~~~iP~~~f~f~~i~~i~~~~~~~~vDVIGvV~~v~~~~~i~~k-~g 363 (653)
|.|++++++|++++|+|||.|+.+|+|++|++ ..++|.+.|+|++|++|.+++.+.+|||||+|++|+++.++++| +|
T Consensus 84 ~~v~~~~~~y~~~~~~~ei~~~~~T~I~~~~~-~~~iP~~~~~f~~i~~i~~~~~~~~vDViG~V~~v~~~~~~~~k~~g 162 (246)
T 1jmc_A 84 GTLKIANKQFTAVKNDYEMTFNNETSVMPCED-DHHLPTVQFDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNN 162 (246)
T ss_dssp CEEEECCGGGCCCCCSEEEECCTTCEEEECCS-CSCCCCCCCCBCCGGGGGGSCTTCEEEEEEEEEEECCCEEEEETTTT
T ss_pred CEEEEcccCcccCCCCEEEEEcCCcEEEEccC-cccCCcceeeeEEHHHHhcccCCCceeEEEEEEEecCeEEEEEecCC
Confidence 99999999999999999999999999999964 45799999999999999998888999999999999999999988 79
Q ss_pred ceeeEEEEEEEeCCCCEEEEEEccchhhhhhhhHHHhhccCCCcEEEEEeeEeecCCCceeccccceEEEEcCChHHHHH
Q 006263 364 METQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHE 443 (653)
Q Consensus 364 ~~~~kr~i~l~D~s~~~i~vtLWg~~A~~~~~~l~~~~~~~~~~Vvaik~~rV~~f~G~sLs~~~~S~i~inPdipe~~~ 443 (653)
++..+|+|+|.|+||.+|+|||||++|..| +...++||+|+++||++|+|++|++.++|+|++|||+|||++
T Consensus 163 ~~~~~r~~~l~D~sg~~i~~tLWg~~a~~~--------~~~~~~vv~i~~~~v~~f~g~~ls~~~~s~i~inpd~pe~~~ 234 (246)
T 1jmc_A 163 REVAKRNIYLMDTSGKVVTATLWGEDADKF--------DGSRQPVLAIKGARVSDFGGRSLSVLSSSTIIANPDIPEAYK 234 (246)
T ss_dssp EEEEEEEEEEECTTCCEEEEEEEHHHHHHC--------CCTTCCEEEEEEEEEECTTSSEEECCSSCEEESSCCSHHHHH
T ss_pred CccEEEEEEEECCCCCEEEEEEEchhhhhc--------ccCCCCEEEEEEEEEEecCCeEEEecCcceEEECCCCHHHHH
Confidence 999999999999999999999999998764 445789999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCc
Q 006263 444 LREWFDSGGKN 454 (653)
Q Consensus 444 l~~w~~~~g~~ 454 (653)
|++||+++|.+
T Consensus 235 l~~w~~~~g~~ 245 (246)
T 1jmc_A 235 LRGWFDAEGQA 245 (246)
T ss_dssp HHHHHHHTTC-
T ss_pred HHHHHHhcCCc
Confidence 99999998864
No 3
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=100.00 E-value=4.3e-46 Score=360.62 Aligned_cols=177 Identities=36% Similarity=0.655 Sum_probs=163.2
Q ss_pred CcchhccHHhhhhcCCCCCCCCcEEEEEEEEEEEeCCceEEecCCCCcCcccccceeeecCc-eeecccCccccCCceEE
Q 006263 470 KNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYR 548 (653)
Q Consensus 470 ~~~~~kti~~i~~~~lg~~~~~~~~~v~atI~~i~~d~~~Y~aC~~~~~~~~C~KKv~~~~~-~~~C~kC~~~~~~~~~r 548 (653)
+.+.++||+||+++++|.+++|+||+|+|||++|+.++|||+|||++ .|+|||++.++ .|+|++|++++++|.||
T Consensus 3 ~~~~~kti~qi~~~~lg~~~k~~~f~v~atI~~i~~d~~~Y~aC~~~----~CnKKv~~~~~g~~~CekC~~~~~~~~~r 78 (181)
T 1l1o_C 3 SNTNWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPTQ----DCNKKVIDQQNGLYRCEKCDTEFPNFKYR 78 (181)
T ss_dssp -CCCBCCHHHHHHHTTTSSSSCEEEEEEEEEEEECCSTTEEEBCCST----TCCCBCEEETTTEEEETTTTEEESSCCEE
T ss_pred CccceEEHHHHhhhccCCCCCCcEEEEEEEEEEEeCCCEEECCCCch----hcCCccccCCCCeEECCCCCCcCCCceEE
Confidence 45679999999999999999999999999999999999999999954 59999997654 89999999999999999
Q ss_pred EEEEEEEEeCCCeEEEEEechhhhhhhCCCHHHHHHHhhccCChhHHHHHHHHhcCceEEEEEEEeeeccCceeeEEEEE
Q 006263 549 YLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITV 628 (653)
Q Consensus 549 Y~l~~~i~D~Tg~~~~~~F~~~ae~llG~sA~el~~~~~e~~d~~~~~~~~~~~~~k~~~f~v~~k~~~y~~e~r~~~~v 628 (653)
|+|++.|+|+||++|+++||+.|++|||+||+||.++. ++++.+|+++|.++.|++|.|+|+++.++||++.|+||+|
T Consensus 79 y~l~~~i~D~Tg~~~~t~F~~~ae~ilG~sA~el~~l~--e~~~~~~~~~~~~~~~~~~~f~l~vk~e~yn~e~r~~~~v 156 (181)
T 1l1o_C 79 MILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELK--DKNEQAFEEVFQNANFRSFIFRVRVKVETYNDESRIKATV 156 (181)
T ss_dssp EEEEEEEECSSCEEEEEEEHHHHHHHHSSCHHHHHHHT--TSCHHHHHHHHHHTTTCEEEEEEEEECCCC-----CEEEE
T ss_pred EEEEEEEEeCCCCEEEEEEhHHHHHHhCCCHHHHHHHH--hhChHHHHHHHHHhcCceEEEEEEEEEeecCCEEEEEEEE
Confidence 99999999999999999999999999999999999998 6789999999999999999999999999999999999999
Q ss_pred EEeecCChHHHHHHHHHHHHhhhc
Q 006263 629 IRADQVNYSSESRYLLDLISKSFR 652 (653)
Q Consensus 629 ~~~~~vd~~~e~~~ll~~i~~~~~ 652 (653)
+++.|+||++|+++|++.|++|.+
T Consensus 157 ~~~~~vd~~~e~~~L~~~i~~~~~ 180 (181)
T 1l1o_C 157 MDVKPVDYREYGRRLVMSIRRSAL 180 (181)
T ss_dssp EEEEECCHHHHHHHHHHHHHHHHH
T ss_pred EEeeeCCHHHHHHHHHHHHHHhhc
Confidence 999999999999999999998853
No 4
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=100.00 E-value=1.7e-41 Score=321.19 Aligned_cols=155 Identities=18% Similarity=0.363 Sum_probs=137.2
Q ss_pred chhccHHhhhhcCCCCCCCCcEEEEEEEEEEEeCC-ceEEecCCCCcCcccccceeeec-CceeecccCccccCCceEEE
Q 006263 472 EIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSD-SFCYTACPLMIGDRQCNKKVTQS-GNRWQCDRCNQEIDECDYRY 549 (653)
Q Consensus 472 ~~~kti~~i~~~~lg~~~~~~~~~v~atI~~i~~d-~~~Y~aC~~~~~~~~C~KKv~~~-~~~~~C~kC~~~~~~~~~rY 549 (653)
..++||+++++++||.+++ || |+|||++|+.+ +|||+||| .|||||++. ++.|+|++|+++ ++|.|||
T Consensus 6 ~i~~~i~~~~~e~lG~~~~--~f-v~atI~~Ik~d~~~~Y~ACp------~CnKKV~~~~~g~~~CekC~~~-~~~~~RY 75 (172)
T 3u50_C 6 SIEEIIQQAQASEIGQKKE--FY-VYGNLVSIQMKNKLYYYRCT------CQGKSVLKYHGDSFFCESCQQF-INPQVHL 75 (172)
T ss_dssp CHHHHHHHHHTCCTTCEEE--EE-EEEEEECCCCSSCCEEEECT------TSCCCEEEETTTEEEETTTTEE-CCCEEEE
T ss_pred HHHHHHHHHHHhhCCCCCC--EE-EEEEEEEEcCCCcEEehhch------hhCCEeeeCCCCeEECCCCCCC-CCceEEE
Confidence 3579999999999999877 99 99999999999 99999999 899999954 449999999999 9999999
Q ss_pred EEEEEEEeCCCeEEEEEechhhhhhhCC-C-------HHHH-HHHhhccCC-hhHHHHHHHHhcCceEEEEEEEeeeccC
Q 006263 550 LLQAQIQDQTGLTWVTAFQESGEEILGC-P-------AKEL-YMLKYELQD-DVRFGEIIRSRVFNQYLFRLKIKEELYG 619 (653)
Q Consensus 550 ~l~~~i~D~Tg~~~~~~F~~~ae~llG~-s-------A~el-~~~~~e~~d-~~~~~~~~~~~~~k~~~f~v~~k~~~y~ 619 (653)
+|++.|+|+||++|+++||+.|++|||+ + |+|| .+|+ +++ ++.|++++.++.|++|.|+||+++++||
T Consensus 76 il~~~i~D~TG~~wvt~F~e~ae~ilG~~~~~~~~~~A~eL~~~l~--e~~~~~~~~~~~~~~~~k~~~frlr~k~e~yn 153 (172)
T 3u50_C 76 MLRAFVQDSTGTIPVMIFDQQSSQLINQIDPSIHVQEAGQYVKNCI--ENGQEEIIRQLFSKLDFARFIFEIQFENKEFN 153 (172)
T ss_dssp CEEEEEEETTEEEEEEECHHHHHHHHHHHCTTSCGGGHHHHHHHHH--TTTCHHHHHHHHHTTTTCEEEEEEEEEECC--
T ss_pred EEEEEEEeCCCCEEEEEEhHHHHHHhCCCCCccchhhHHHHHHHHH--hcCcHHHHHHHHHhhcCcEEEEEEEEEEcccC
Confidence 9999999999999999999999999999 9 9999 8888 445 8999999999999999999999999999
Q ss_pred ceeeEEEEEEEeecCChHH
Q 006263 620 DEQRVKITVIRADQVNYSS 638 (653)
Q Consensus 620 ~e~r~~~~v~~~~~vd~~~ 638 (653)
||.|+||+|+++.|+||.+
T Consensus 154 de~Rvr~tv~~~~p~~~~~ 172 (172)
T 3u50_C 154 NEQEIAYKVLKIEKENIKE 172 (172)
T ss_dssp ----EEEEEEEEEEC----
T ss_pred CEeEEEEEEEEeeecCcCC
Confidence 9999999999999999963
No 5
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.9e-31 Score=236.75 Aligned_cols=110 Identities=42% Similarity=0.846 Sum_probs=106.5
Q ss_pred CcceeccccCCCCCceEEEEEEEeeccccccccCCCCceeEEEEEEeCCCCeEEEEEchhHHHHHHhhcccCcEEEEece
Q 006263 206 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKG 285 (653)
Q Consensus 206 ~~~~pI~~L~p~~~~w~I~~RV~~k~~ir~~~~~~g~gk~f~~~L~D~~g~~I~at~f~~~~~kf~~~l~eG~vy~is~~ 285 (653)
++++||++|+||+++|+|+|||++||++|+|++++|+|++|+|+|+|++| +|+|++|++.+++|++.|+||+||+|++|
T Consensus 2 ~~~~~Is~L~p~~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G-~I~at~~~~~~~~f~~~l~eG~vy~Is~~ 80 (114)
T 1ynx_A 2 RPIFAIEQLSPYQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDTSG-EIRATAFNDFATKFNEILQEGKVYYVSKA 80 (114)
T ss_dssp CCBCCGGGCCTTTCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEEETTE-EEEEEECHHHHHHHHHHSCSSSEEEEESC
T ss_pred CceEEHHHCCCCCCceEEEEEEEEeccceEEecCCCCceEEEEEEECCCC-eEEEEECHHHHHHHHhhcccCcEEEECCc
Confidence 46899999999999999999999999999999999999999999999777 99999999999999999999999999999
Q ss_pred EEecCCCcccCCCCceEEEeccccEEEeccC
Q 006263 286 SLKPAQKNFNHLKNEWEIFLEATSTVDLCTE 316 (653)
Q Consensus 286 ~V~~a~~~f~~~~~~yei~f~~~T~I~~~~d 316 (653)
.|++|+++|++++|+|||.|+.+|+|++|.|
T Consensus 81 ~V~~a~~~y~~~~~~yei~f~~~T~I~~~~d 111 (114)
T 1ynx_A 81 KLQPAKPQFTNLTHPYELNLDRDTVIEECFD 111 (114)
T ss_dssp EEEECCTTTSSSSSCEEEEECSSCEEEESCC
T ss_pred EEEECCCCcccCCCCEEEEECCCCEEEECCC
Confidence 9999999999999999999999999999964
No 6
>2b29_A Replication protein A 70 kDa DNA-binding subunit; 1.60A {Homo sapiens} SCOP: b.40.4.3 PDB: 2b3g_A 1ewi_A
Probab=99.96 E-value=8.7e-29 Score=222.68 Aligned_cols=111 Identities=35% Similarity=0.580 Sum_probs=101.9
Q ss_pred CCCCCCHHHHHHHhC-CCCCCCCeEEEEEEEEcC--CCCceEEEEEecccceeee-eecccchhhcccCCcccCcEEEEe
Q 006263 1 MPVNLTPNSISLING-GDVNSKPLVQVMDIKLIG--STQERYRFLISDSVSTQHA-MLATQLNDRVKTGQVKKGSVVQLI 76 (653)
Q Consensus 1 m~~~Lt~Gai~~i~~-~~~~~~pvvQVl~ik~~~--~~~~ryr~~lSDG~~~~~~-ml~t~ln~~v~~~~l~~~sIIkl~ 76 (653)
|+.+||+|||++|++ +....+|||||+++|+++ ++.+|||++||||.|++++ ||+||||+++++|+|++|+||||+
T Consensus 4 M~~~LT~Gai~~I~~~~~~~~~PvlQVl~~K~i~~~~~~~RyRl~lSDG~~~~~~~mLatqln~~v~~g~l~~~sIirl~ 83 (123)
T 2b29_A 4 MVGQLSEGAIAAIMQKGDTNIKPILQVINIRPITTGNSPPRYRLLMSDGLNTLSSFMLATQLNPLVEEEQLSSNCVCQIH 83 (123)
T ss_dssp --CCCCTTHHHHHHHHCCCSCCCEEEEEEEEEECCTTSCCEEEEEEECSSEEEEEEEECGGGHHHHHTTSSCTTCEEEEE
T ss_pred hhhcCCHhHHHHHHhcCCCCCCceEEEEeeeecCCCCCCceEEEEEECcchheeeehhHHHHHHHHhcCCccCCCEEEEE
Confidence 777899999999998 666789999999999995 3468999999999999998 999999999999999999999999
Q ss_pred eeEeeeec-CeEEEEEEeeeEeec---CCcccCCCcccc
Q 006263 77 DYICSTVQ-NRKIIVVLNMETIIL---DCEPIGNPKIFS 111 (653)
Q Consensus 77 ~y~~~~~~-~k~~iii~~~evl~~---~~~~iG~P~~~~ 111 (653)
+|.++.++ +|+++||+++|||.+ .+++||+|++++
T Consensus 84 ~y~~~~v~~~k~vliIl~levl~~~e~~~~~iG~P~~~~ 122 (123)
T 2b29_A 84 RFIVNTLKDGRRVVILMELEVLKSAEAVGVKIGNPVPYN 122 (123)
T ss_dssp EEEEEECSSSCEEEEEEEEEEEECSTTSCSCCSCCEECC
T ss_pred EEEEEEecCCcEEEEEEeeEEeecccccCCccCCCccCC
Confidence 99999999 999999999999998 588999999864
No 7
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=99.45 E-value=2.5e-13 Score=118.91 Aligned_cols=97 Identities=21% Similarity=0.264 Sum_probs=87.3
Q ss_pred cceeccccCCCCCceEEEEEEEeeccccccccCCC-CceeEEEEEEeCCCCeEEEEEchhHHHHHHhhcccCcEEEEece
Q 006263 207 RIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARG-DGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKG 285 (653)
Q Consensus 207 ~~~pI~~L~p~~~~w~I~~RV~~k~~ir~~~~~~g-~gk~f~~~L~D~~g~~I~at~f~~~~~kf~~~l~eG~vy~is~~ 285 (653)
.++||++|.|+ .+|+|.|||+.++++|+|.+..| +|+++++.|.| ++|.|++|+|++.++. .|++|++|.| ++
T Consensus 4 ~~~~I~dL~~~-~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D-~TG~IrvtlW~~~a~~---~l~~Gdvv~i-~g 77 (105)
T 3dm3_A 4 DTYNIGELSPG-MTATFEGEVISALPIKEFKRADGSIGKLKSFIVRD-ETGSIRVTLWDNLTDI---DVGRGDYVRV-RG 77 (105)
T ss_dssp CEECGGGCCSS-EEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEE-TTEEEEEEEEGGGGGS---CCCTTCEEEE-EE
T ss_pred cceEHHHCCCC-CeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEEC-CCCcEEEEEECccccc---ccCCCCEEEE-EE
Confidence 57899999999 78999999999999999987666 58999999999 6779999999998876 8999999999 99
Q ss_pred EEecCCCcccCCCCceEEEeccccEEEecc
Q 006263 286 SLKPAQKNFNHLKNEWEIFLEATSTVDLCT 315 (653)
Q Consensus 286 ~V~~a~~~f~~~~~~yei~f~~~T~I~~~~ 315 (653)
.|+... .+.+||.+...|.|++|.
T Consensus 78 ~vk~~~------~g~~eL~~g~~~~i~~~~ 101 (105)
T 3dm3_A 78 YIREGY------YGGLECTANYVEILKKGE 101 (105)
T ss_dssp EEEECT------TSSEEEEEEEEEEEECCC
T ss_pred EEEEcc------CCCEEEEeCCceEEEecc
Confidence 998874 347999999999999984
No 8
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=99.44 E-value=5.8e-13 Score=119.61 Aligned_cols=109 Identities=17% Similarity=0.207 Sum_probs=94.5
Q ss_pred ceeccccCCCCCceEEEEEEEeeccccccccCCCCceeEEEEEEeCCCCeEEEEEchhHHHHHHhhcccCcEEEEeceEE
Q 006263 208 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSL 287 (653)
Q Consensus 208 ~~pI~~L~p~~~~w~I~~RV~~k~~ir~~~~~~g~gk~f~~~L~D~~g~~I~at~f~~~~~kf~~~l~eG~vy~is~~~V 287 (653)
+++|++|.|+.+.|.+.++|..++++|+|.+.+|.++++++.|.| ++|+|++++|++.++ .|++|+||.|.++.|
T Consensus 2 f~~I~dL~~~~~~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~D-~TG~I~~tlW~~~~~----~~~~G~vv~i~~g~v 76 (119)
T 1o7i_A 2 EEKVGNLKPNMESVNVTVRVLEASEARQIQTKNGVRTISEAIVGD-ETGRVKLTLWGKHAG----SIKEGQVVKIENAWT 76 (119)
T ss_dssp BCCGGGCCTTCSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEE-TTEEEEEEEEGGGTT----CCCTTCEEEEEEEEE
T ss_pred cEEHHHCcCCCCcEEEEEEEEECCCCeeEEecCCCEEEEEEEEEe-CCCEEEEEEECChhh----cCCCCCEEEEEeEEE
Confidence 568999999988999999999999999998777767899999999 788899999999874 589999999999998
Q ss_pred ecCCCcccCCCCceEEEeccccEEEeccCCCCCCCcccceecchhhhhhc
Q 006263 288 KPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESA 337 (653)
Q Consensus 288 ~~a~~~f~~~~~~yei~f~~~T~I~~~~d~~~~iP~~~f~f~~i~~i~~~ 337 (653)
... .+.++|.+.+.+.|+.+++ ++|..+++|.+.
T Consensus 77 ~~~-------~g~~qL~i~~~~~i~~~~~---------~~~~~~~~l~~~ 110 (119)
T 1o7i_A 77 TAF-------KGQVQLNAGSKTKIAEASE---------DGFPESSQIPEN 110 (119)
T ss_dssp EEE-------TTEEEEEECTTCEEEECCC---------TTCCCGGGSCCC
T ss_pred EEe-------CCEEEEEECCCEEEEEcCC---------cCCCcHHHhhhc
Confidence 764 3569999999999999842 457778888764
No 9
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=99.38 E-value=1.1e-12 Score=113.36 Aligned_cols=93 Identities=25% Similarity=0.330 Sum_probs=79.3
Q ss_pred eeccccCCCCCceEEEEEEEeeccccccccCCC-CceeEEEEEEeCCCCeEEEEEchhHHHHHHhhcccCcEEEEeceEE
Q 006263 209 IPIAALNPYQGRWAIKARVTAKGDLRRYNNARG-DGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSL 287 (653)
Q Consensus 209 ~pI~~L~p~~~~w~I~~RV~~k~~ir~~~~~~g-~gk~f~~~L~D~~g~~I~at~f~~~~~kf~~~l~eG~vy~is~~~V 287 (653)
.||++|+|+ .+|+|.|||+.+.++|+|.+..| +++++++.|.| ++|.|++|+|++.++. .|++|++|.| ++.|
T Consensus 3 ~kI~dl~~g-~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~D-eTG~I~~tlW~~~~~~---~i~~Gdvv~i-~g~v 76 (97)
T 3e0e_A 3 YKISELMPN-LSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKD-DTGSIRGTLWNELADF---EVKKGDIAEV-SGYV 76 (97)
T ss_dssp ECGGGCCTT-EEEEEEEEEEEECCCEEEC----CCEEEEEEEEEE-TTEEEEEEEEGGGGGC---CCCTTCEEEE-EEEE
T ss_pred eEHHHCCCC-CcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEEC-CCCcEEEEEECCcccc---ccCCCCEEEE-EEEE
Confidence 489999999 79999999999999999987555 58999999999 7889999999998875 7999999999 8888
Q ss_pred ecCCCcccCCCCceEEEeccccEEEec
Q 006263 288 KPAQKNFNHLKNEWEIFLEATSTVDLC 314 (653)
Q Consensus 288 ~~a~~~f~~~~~~yei~f~~~T~I~~~ 314 (653)
+... ..+||.+++++.|+.+
T Consensus 77 ~~~~-------~~~el~~g~~~~i~k~ 96 (97)
T 3e0e_A 77 KQGY-------SGLEISVDNIGIIEKS 96 (97)
T ss_dssp EEC---------CEEEEEEEEEEEECC
T ss_pred EEcC-------CeEEEEECCCcEEEEC
Confidence 5543 2699999999999875
No 10
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=99.36 E-value=3.2e-12 Score=114.06 Aligned_cols=106 Identities=15% Similarity=0.281 Sum_probs=91.0
Q ss_pred ccceecchhhhhhcccCccccEEEEEEEecCceeEEecCCceeeEEEEEEEeCCCCEEEEEEccchhhhhhhhHHHhhcc
Q 006263 324 QQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDV 403 (653)
Q Consensus 324 ~~f~f~~i~~i~~~~~~~~vDVIGvV~~v~~~~~i~~k~g~~~~kr~i~l~D~s~~~i~vtLWg~~A~~~~~~l~~~~~~ 403 (653)
..|+|++|++|. .+..+|++|+|++++++.++++|+|++..+++++|.|+|| +|++|||++.+..+ +.+
T Consensus 3 ~~~~~~~I~~L~---~g~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~TG-~I~~t~w~~~~~~~-----~~l-- 71 (115)
T 2k50_A 3 PEHRMDTISKLE---EGAETPVTGRVMKISSPRTFTTRKGREGKLANVIIADDTG-ELRAVFWTENIKLL-----KKF-- 71 (115)
T ss_dssp CTTCCCCTTTCC---TTCEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEETTE-EEEEEEETTGGGGG-----GTC--
T ss_pred cccceEEHHHCC---CCCEeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeCCC-eEEEEEeCchhhhh-----hcC--
Confidence 357889998886 4677899999999999998888888777899999999999 99999999987642 123
Q ss_pred CCCcEEEEEeeEeec-CCCc-eeccccceEEEEcCChHH
Q 006263 404 GFFPVLSVKSGKVND-FSGK-SIGTIPSTQLFINPDFAE 440 (653)
Q Consensus 404 ~~~~Vvaik~~rV~~-f~G~-sLs~~~~S~i~inPdipe 440 (653)
..+++|+|++++|++ |+|+ +|+....|.+..+||+..
T Consensus 72 ~~G~vv~i~g~~v~~~f~g~~qL~~~~~~~i~~~~~~~~ 110 (115)
T 2k50_A 72 REGDVIRIKDVNIRGGFGGRKEAHLMPRSTVEVLDPLEH 110 (115)
T ss_dssp CTTSEEEEEEEEECCCSSSSCEEEECTTCCEEEESSCCC
T ss_pred CCCCEEEEEeeEEccccCCeEEEEECCCceEEECCcccc
Confidence 468999999999987 9985 899999999999998754
No 11
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=99.33 E-value=3e-12 Score=114.94 Aligned_cols=103 Identities=21% Similarity=0.355 Sum_probs=87.0
Q ss_pred ecchhhhhhcccCccccEEEEEEEecCceeEEecCCceeeEEEEEEEeCCCCEEEEEEccchhhhhhhhHHHhhccCCCc
Q 006263 328 FRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFP 407 (653)
Q Consensus 328 f~~i~~i~~~~~~~~vDVIGvV~~v~~~~~i~~k~g~~~~kr~i~l~D~s~~~i~vtLWg~~A~~~~~~l~~~~~~~~~~ 407 (653)
|++|+||.. ....+|++|+|++++++..+++|+|+ ..+++++|.|+|| +|++|||++.|.. | ..++
T Consensus 2 f~~I~dL~~--~~~~v~~~~~V~~~~~~~~~~~k~G~-~~~~~~~l~D~TG-~I~~tlW~~~~~~--------~--~~G~ 67 (119)
T 1o7i_A 2 EEKVGNLKP--NMESVNVTVRVLEASEARQIQTKNGV-RTISEAIVGDETG-RVKLTLWGKHAGS--------I--KEGQ 67 (119)
T ss_dssp BCCGGGCCT--TCSSEEEEEEEEEECCCEEECCTTCC-EEEEEEEEEETTE-EEEEEEEGGGTTC--------C--CTTC
T ss_pred cEEHHHCcC--CCCcEEEEEEEEECCCCeeEEecCCC-EEEEEEEEEeCCC-EEEEEEECChhhc--------C--CCCC
Confidence 677888764 23479999999999999999888887 7899999999999 6999999999743 3 3589
Q ss_pred EEEEEeeEeecCCCc-eeccccceEEEEcCC--hHHHHHH
Q 006263 408 VLSVKSGKVNDFSGK-SIGTIPSTQLFINPD--FAEAHEL 444 (653)
Q Consensus 408 Vvaik~~rV~~f~G~-sLs~~~~S~i~inPd--ipe~~~l 444 (653)
||.|++++|++|+|+ +|+....|+|..+|+ +|++.+|
T Consensus 68 vv~i~~g~v~~~~g~~qL~i~~~~~i~~~~~~~~~~~~~l 107 (119)
T 1o7i_A 68 VVKIENAWTTAFKGQVQLNAGSKTKIAEASEDGFPESSQI 107 (119)
T ss_dssp EEEEEEEEEEEETTEEEEEECTTCEEEECCCTTCCCGGGS
T ss_pred EEEEEeEEEEEeCCEEEEEECCCEEEEEcCCcCCCcHHHh
Confidence 999999999999995 899999999999874 5665554
No 12
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=99.27 E-value=2e-11 Score=106.77 Aligned_cols=93 Identities=24% Similarity=0.305 Sum_probs=78.3
Q ss_pred eecchhhhhhcccCccccEEEEEEEecCceeEEecCCceeeEEEEEEEeCCCCEEEEEEccchhhhhhhhHHHhhccCCC
Q 006263 327 SFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFF 406 (653)
Q Consensus 327 ~f~~i~~i~~~~~~~~vDVIGvV~~v~~~~~i~~k~g~~~~kr~i~l~D~s~~~i~vtLWg~~A~~~~~~l~~~~~~~~~ 406 (653)
+|++|+||.. +..+||+|+|++++++.++++++|++..+|+++|.|+|| +|++||||+.|.. ...++
T Consensus 4 ~~~~I~dL~~---~~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D~TG-~IrvtlW~~~a~~---------~l~~G 70 (105)
T 3dm3_A 4 DTYNIGELSP---GMTATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETG-SIRVTLWDNLTDI---------DVGRG 70 (105)
T ss_dssp CEECGGGCCS---SEEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETTE-EEEEEEEGGGGGS---------CCCTT
T ss_pred cceEHHHCCC---CCeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCC-cEEEEEECccccc---------ccCCC
Confidence 5788888875 378999999999999999998999999999999999999 8999999999863 12468
Q ss_pred cEEEEEeeEeecC--CCceeccccceEEE
Q 006263 407 PVLSVKSGKVNDF--SGKSIGTIPSTQLF 433 (653)
Q Consensus 407 ~Vvaik~~rV~~f--~G~sLs~~~~S~i~ 433 (653)
++|.| .++|+.+ ++..|+....|.|.
T Consensus 71 dvv~i-~g~vk~~~~g~~eL~~g~~~~i~ 98 (105)
T 3dm3_A 71 DYVRV-RGYIREGYYGGLECTANYVEILK 98 (105)
T ss_dssp CEEEE-EEEEEECTTSSEEEEEEEEEEEE
T ss_pred CEEEE-EEEEEEccCCCEEEEeCCceEEE
Confidence 99999 6777654 46789888777764
No 13
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=99.19 E-value=7.5e-11 Score=105.12 Aligned_cols=101 Identities=23% Similarity=0.346 Sum_probs=86.8
Q ss_pred cceeccccCCCCCceEEEEEEEeeccccccccCCC-CceeEEEEEEeCCCCeEEEEEchhHHHHHHhhcccCcEEEEece
Q 006263 207 RIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARG-DGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKG 285 (653)
Q Consensus 207 ~~~pI~~L~p~~~~w~I~~RV~~k~~ir~~~~~~g-~gk~f~~~L~D~~g~~I~at~f~~~~~kf~~~l~eG~vy~is~~ 285 (653)
++++|++|.|+.. .+|.++|..++++|+|.+.+| +++++++.|.| ++|+|++++|++.++.+ +.|++|++|.|++.
T Consensus 6 ~~~~I~~L~~g~~-v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D-~TG~I~~t~w~~~~~~~-~~l~~G~vv~i~g~ 82 (115)
T 2k50_A 6 RMDTISKLEEGAE-TPVTGRVMKISSPRTFTTRKGREGKLANVIIAD-DTGELRAVFWTENIKLL-KKFREGDVIRIKDV 82 (115)
T ss_dssp CCCCTTTCCTTCE-EEEEEEEEEECCCEECCCTTSSCCEEEEEEEEE-TTEEEEEEEETTGGGGG-GTCCTTSEEEEEEE
T ss_pred ceEEHHHCCCCCE-eEEEEEEEECCCceEEEcCCCCEEEEEEEEEEe-CCCeEEEEEeCchhhhh-hcCCCCCEEEEEee
Confidence 4678999999865 599999999999999877666 37899999999 67799999999987765 78999999999999
Q ss_pred EEecCCCcccCCCCceEEEeccccEEEeccC
Q 006263 286 SLKPAQKNFNHLKNEWEIFLEATSTVDLCTE 316 (653)
Q Consensus 286 ~V~~a~~~f~~~~~~yei~f~~~T~I~~~~d 316 (653)
.|+.. |+ ..++|.+...+.|++++|
T Consensus 83 ~v~~~---f~---g~~qL~~~~~~~i~~~~~ 107 (115)
T 2k50_A 83 NIRGG---FG---GRKEAHLMPRSTVEVLDP 107 (115)
T ss_dssp EECCC---SS---SSCEEEECTTCCEEEESS
T ss_pred EEccc---cC---CeEEEEECCCceEEECCc
Confidence 88653 43 469999999999999853
No 14
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=99.08 E-value=6.2e-10 Score=97.54 Aligned_cols=92 Identities=14% Similarity=0.233 Sum_probs=79.0
Q ss_pred cceeccccCCCCCceEEEEEEEeeccccccccCCC-CceeEEEEEEeCCCCeEEEEEchhHHHHHHhhcccCcEEEEece
Q 006263 207 RIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARG-DGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKG 285 (653)
Q Consensus 207 ~~~pI~~L~p~~~~w~I~~RV~~k~~ir~~~~~~g-~gk~f~~~L~D~~g~~I~at~f~~~~~kf~~~l~eG~vy~is~~ 285 (653)
++++|++|.|+...+++.++|+.+++.| .. ..| ++++.++.|.| ++|+|++++|++. |++|++|.|.|+
T Consensus 2 ~~~kI~dl~pg~~~v~v~~~V~~~~~~~-~~-k~G~~~~v~~~~l~D-eTG~I~~tlW~~~-------l~~Gdvv~i~ng 71 (106)
T 2k75_A 2 DLVKIRDVSLSTPYVSVIGKITGIHKKE-YE-SDGTTKSVYQGYIED-DTARIRISSFGKQ-------LQDSDVVRIDNA 71 (106)
T ss_dssp CBCCSTTCCTTCSEEEEEEEEEEEEEEE-EE-ETTEEEEEEEEEEEC-SSCEEEEEEESSC-------CCTTEEEEEEEE
T ss_pred CcEEHHHcCCCCceEEEEEEEEEccccc-cc-cCCCeeEEEEEEEEc-CCCeEEEEEEcCc-------cCCCCEEEEEee
Confidence 3678999999998899999999999988 32 233 34699999999 7889999999986 999999999999
Q ss_pred EEecCCCcccCCCCceEEEeccccEEEecc
Q 006263 286 SLKPAQKNFNHLKNEWEIFLEATSTVDLCT 315 (653)
Q Consensus 286 ~V~~a~~~f~~~~~~yei~f~~~T~I~~~~ 315 (653)
.+..- ...++|.+++.+.|+++.
T Consensus 72 ~v~~~-------~g~~~L~v~~~~~I~~~~ 94 (106)
T 2k75_A 72 RVAQF-------NGYLSLSVGDSSRIESVN 94 (106)
T ss_dssp EEEEE-------TTEEEEEECTTSEEEECC
T ss_pred EEeEE-------CCEEEEEECCcEEEEECC
Confidence 88653 346999999999999984
No 15
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=98.97 E-value=3.3e-09 Score=91.41 Aligned_cols=90 Identities=28% Similarity=0.299 Sum_probs=69.7
Q ss_pred chhhhhhcccCccccEEEEEEEecCceeEEecCCceeeEEEEEEEeCCCCEEEEEEccchhhhhhhhHHHhhccCCCcEE
Q 006263 330 HISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVL 409 (653)
Q Consensus 330 ~i~~i~~~~~~~~vDVIGvV~~v~~~~~i~~k~g~~~~kr~i~l~D~s~~~i~vtLWg~~A~~~~~~l~~~~~~~~~~Vv 409 (653)
+|+||. .+..++++|.|.+++++.++++++|.+...+++.|.|+|| +|++|||++.|.. .-..+++|
T Consensus 4 kI~dl~---~g~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~DeTG-~I~~tlW~~~~~~---------~i~~Gdvv 70 (97)
T 3e0e_A 4 KISELM---PNLSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDTG-SIRGTLWNELADF---------EVKKGDIA 70 (97)
T ss_dssp CGGGCC---TTEEEEEEEEEEEECCCEEEC----CCEEEEEEEEEETTE-EEEEEEEGGGGGC---------CCCTTCEE
T ss_pred EHHHCC---CCCcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCC-cEEEEEECCcccc---------ccCCCCEE
Confidence 556654 4578999999999999999988899888999999999999 9999999999753 12468999
Q ss_pred EEEeeEeecCCCc-eeccccceEEE
Q 006263 410 SVKSGKVNDFSGK-SIGTIPSTQLF 433 (653)
Q Consensus 410 aik~~rV~~f~G~-sLs~~~~S~i~ 433 (653)
.| .++|+.|.|. .|+....+.|.
T Consensus 71 ~i-~g~v~~~~~~~el~~g~~~~i~ 94 (97)
T 3e0e_A 71 EV-SGYVKQGYSGLEISVDNIGIIE 94 (97)
T ss_dssp EE-EEEEEEC--CEEEEEEEEEEEE
T ss_pred EE-EEEEEEcCCeEEEEECCCcEEE
Confidence 99 6799887664 78877777664
No 16
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=98.85 E-value=2.6e-08 Score=91.56 Aligned_cols=98 Identities=12% Similarity=0.196 Sum_probs=83.3
Q ss_pred CcceeccccCCCCCceEEEEEEEeecccc---ccccCCC-------CceeEEEEEEeCCCCeEEEEEchhHHHHHHhhcc
Q 006263 206 ARIIPIAALNPYQGRWAIKARVTAKGDLR---RYNNARG-------DGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIE 275 (653)
Q Consensus 206 ~~~~pI~~L~p~~~~w~I~~RV~~k~~ir---~~~~~~g-------~gk~f~~~L~D~~g~~I~at~f~~~~~kf~~~l~ 275 (653)
..+++|++|.|...+-++.|||+..+.++ ++....| ++++.++.|.| ++|.|+.|+|++.++ .|+
T Consensus 14 p~~~kI~dL~pg~~~v~l~~kVl~~~~v~~~~~~~R~dG~~~~~~r~~~V~~~lVgD-eTG~I~ftlW~e~~~----~l~ 88 (145)
T 1wjj_A 14 PVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGD-ETGCILFTARNDQVD----LMK 88 (145)
T ss_dssp CSSCCSTTCCTTCCCEEEEEEEEEEEECCSSSSCCSCSSCCSSCCCCCCCEEEEEEC-SSCEEEEEECTTHHH----HTC
T ss_pred ccceEHHHcCCCCCceEEEEEEEEcccccccccccccCCccccccCCceEEEEEEEc-CCcEEEEEEecCCcC----cCC
Confidence 35779999999998899999999999988 5543334 67899999999 899999999999775 588
Q ss_pred cCcEEEEeceEEecCCCcccCCCCceEEEeccccEEEecc
Q 006263 276 VGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCT 315 (653)
Q Consensus 276 eG~vy~is~~~V~~a~~~f~~~~~~yei~f~~~T~I~~~~ 315 (653)
+|++|.|.|+.++.-+ ..++|.+++++.|+...
T Consensus 89 ~Gd~v~i~na~v~~~~-------G~~~L~vgk~g~Ie~~~ 121 (145)
T 1wjj_A 89 PGATVILRNSRIDMFK-------GTMRLGVDKWGRIEATG 121 (145)
T ss_dssp TTCEEEEEEEEEEEET-------TEEEEEECTTCCBCCCS
T ss_pred CCCEEEEeccEEEeEC-------CEEEEEECCCEEEEECC
Confidence 9999999999986532 35999999999999873
No 17
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=98.80 E-value=1.9e-08 Score=87.98 Aligned_cols=91 Identities=15% Similarity=0.255 Sum_probs=76.8
Q ss_pred ceecchhhhhhcccCccccEEEEEEEecCceeEEecCCceeeEEEEEEEeCCCCEEEEEEccchhhhhhhhHHHhhccCC
Q 006263 326 FSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGF 405 (653)
Q Consensus 326 f~f~~i~~i~~~~~~~~vDVIGvV~~v~~~~~i~~k~g~~~~kr~i~l~D~s~~~i~vtLWg~~A~~~~~~l~~~~~~~~ 405 (653)
|+|++|+||.. ....|+++|.|.++++.. .+|+|++...+++.|.|+|| +|++|||++. + ..
T Consensus 1 ~~~~kI~dl~p--g~~~v~v~~~V~~~~~~~--~~k~G~~~~v~~~~l~DeTG-~I~~tlW~~~---l----------~~ 62 (106)
T 2k75_A 1 SDLVKIRDVSL--STPYVSVIGKITGIHKKE--YESDGTTKSVYQGYIEDDTA-RIRISSFGKQ---L----------QD 62 (106)
T ss_dssp CCBCCSTTCCT--TCSEEEEEEEEEEEEEEE--EEETTEEEEEEEEEEECSSC-EEEEEEESSC---C----------CT
T ss_pred CCcEEHHHcCC--CCceEEEEEEEEEccccc--cccCCCeeEEEEEEEEcCCC-eEEEEEEcCc---c----------CC
Confidence 56888888864 234599999999999887 46788877889999999999 8999999997 1 25
Q ss_pred CcEEEEEeeEeecCCCc-eeccccceEEEE
Q 006263 406 FPVLSVKSGKVNDFSGK-SIGTIPSTQLFI 434 (653)
Q Consensus 406 ~~Vvaik~~rV~~f~G~-sLs~~~~S~i~i 434 (653)
+.+|.|+++++..|+|+ .|+....|+|..
T Consensus 63 Gdvv~i~ng~v~~~~g~~~L~v~~~~~I~~ 92 (106)
T 2k75_A 63 SDVVRIDNARVAQFNGYLSLSVGDSSRIES 92 (106)
T ss_dssp TEEEEEEEEEEEEETTEEEEEECTTSEEEE
T ss_pred CCEEEEEeeEEeEECCEEEEEECCcEEEEE
Confidence 89999999999999996 898888888764
No 18
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=98.59 E-value=3.4e-06 Score=84.93 Aligned_cols=177 Identities=13% Similarity=0.074 Sum_probs=121.3
Q ss_pred eecchhhhhhcccCccccEEEEEEEecCceeEEecCCceeeEEEEEEEeCCCCEEEEEEccchhhhhhhhHHHhhccCCC
Q 006263 327 SFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFF 406 (653)
Q Consensus 327 ~f~~i~~i~~~~~~~~vDVIGvV~~v~~~~~i~~k~g~~~~kr~i~l~D~s~~~i~vtLWg~~A~~~~~~l~~~~~~~~~ 406 (653)
.+++|++|.... ....|.|.|...+++..+.... .+....++.|.|++| .|++|+|++.|..|...| ..|
T Consensus 7 ~~~~I~~L~p~~--~~w~I~~rV~~k~~~r~~~~~~-~~g~~~~~~L~De~G-~I~at~~~~~~~~~~~~l------~~G 76 (246)
T 1jmc_A 7 KVVPIASLTPYQ--SKWTICARVTNKSQIRTWSNSR-GEGKLFSLELVDESG-EIRATAFNEQVDKFFPLI------EVN 76 (246)
T ss_dssp CBCCGGGCCTTC--CCCEEEEEEEEECCCEEEECSS-CEEEEEEEEEECSSC-EEEEEEEHHHHHHHGGGC------CTT
T ss_pred ceEEHHHCCCCC--CceEEEEEEEEecccceeeCCC-CCceEEEEEEECCCC-eEEEEEChHHHHHhhhhc------ccC
Confidence 578888886532 3578999999999999887544 345567899999999 999999999988764332 368
Q ss_pred cEEEEEeeEeecCCC-------c-eeccccceEEEEcCChHHHHHHHHHHhcCCCccceeecccccccCCCCcchhccHH
Q 006263 407 PVLSVKSGKVNDFSG-------K-SIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVS 478 (653)
Q Consensus 407 ~Vvaik~~rV~~f~G-------~-sLs~~~~S~i~inPdipe~~~l~~w~~~~g~~~~~~sls~~~~~~~~~~~~~kti~ 478 (653)
.++.|.+++|+..++ . .|.....|.|..-++.+. +. ........|+
T Consensus 77 ~vy~i~~~~v~~~~~~y~~~~~~~ei~~~~~T~I~~~~~~~~-------------------iP-------~~~~~f~~i~ 130 (246)
T 1jmc_A 77 KVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPCEDDHH-------------------LP-------TVQFDFTGID 130 (246)
T ss_dssp CEEEEECCEEEECCGGGCCCCCSEEEECCTTCEEEECCSCSC-------------------CC-------CCCCCBCCGG
T ss_pred CEEEECCCEEEEcccCcccCCCCEEEEEcCCcEEEEccCccc-------------------CC-------cceeeeEEHH
Confidence 999999999986533 1 455566677665543210 10 0112346678
Q ss_pred hhhhcCCCCCCCCcEEEEEEEEEEEeCCceEEecCCCCcCcccccceeeecCceeecccCccccCCceEEEEEEEEEEeC
Q 006263 479 QIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQ 558 (653)
Q Consensus 479 ~i~~~~lg~~~~~~~~~v~atI~~i~~d~~~Y~aC~~~~~~~~C~KKv~~~~~~~~C~kC~~~~~~~~~rY~l~~~i~D~ 558 (653)
+|.+. +...+..|.|.|..+..-. .+.... +-....+..+.|.|.
T Consensus 131 ~i~~~-----~~~~~vDViG~V~~v~~~~-~~~~k~-----------------------------~g~~~~~r~~~l~D~ 175 (246)
T 1jmc_A 131 DLENK-----SKDSLVDIIGICKSYEDAT-KITVRS-----------------------------NNREVAKRNIYLMDT 175 (246)
T ss_dssp GGGGS-----CTTCEEEEEEEEEEECCCE-EEEETT-----------------------------TTEEEEEEEEEEECT
T ss_pred HHhcc-----cCCCceeEEEEEEEecCeE-EEEEec-----------------------------CCCccEEEEEEEECC
Confidence 88762 2234788999998886411 010000 112345788999999
Q ss_pred CC-eEEEEEechhhhhh
Q 006263 559 TG-LTWVTAFQESGEEI 574 (653)
Q Consensus 559 Tg-~~~~~~F~~~ae~l 574 (653)
|| ++.+++|++.|+.+
T Consensus 176 sg~~i~~tLWg~~a~~~ 192 (246)
T 1jmc_A 176 SGKVVTATLWGEDADKF 192 (246)
T ss_dssp TCCEEEEEEEHHHHHHC
T ss_pred CCCEEEEEEEchhhhhc
Confidence 99 49999999999865
No 19
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=98.59 E-value=5.4e-07 Score=79.18 Aligned_cols=92 Identities=15% Similarity=0.190 Sum_probs=76.0
Q ss_pred cceeccccCCCCCceEEEEEEEeeccccccccCCCCceeEEEEEEeCCCCeEEEEEchhHHHHHHhhcccCcEEEEeceE
Q 006263 207 RIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGS 286 (653)
Q Consensus 207 ~~~pI~~L~p~~~~w~I~~RV~~k~~ir~~~~~~g~gk~f~~~L~D~~g~~I~at~f~~~~~kf~~~l~eG~vy~is~~~ 286 (653)
++++|++|.|....-++.+||+.+|..|. ......++|.| ++|.|++|+|++. -.+.|++|++|.|.|+.
T Consensus 4 ~~~kI~dl~~~~~~v~v~~~V~~~~~~~~------~~~~~~~~l~D-eTG~I~~t~W~~~---~~~~~~~G~~V~i~n~~ 73 (109)
T 2kbn_A 4 QLTKIVDIVENGQWANLKAKVIQLWENTH------ESISQVGLLGD-ETGIIKFTIWKNA---ELPLLEQGESYLLRSVV 73 (109)
T ss_dssp CBCCTTTCCSTTCEEEEEEEEEEEEECCC------SSEEEEEEEEC-TTCCEEEEEEGGG---CCCCCCTTCEEEEEEEE
T ss_pred CceEHHHCCCCCCcEEEEEEEEEeEcCCC------CeEEEEEEEEC-CCCeEEEEEECcc---cccccCCCCEEEEEEEE
Confidence 46689999998888899999999987442 23566789999 7899999999943 23589999999999999
Q ss_pred EecCCCcccCCCCceEEEeccccEEEecc
Q 006263 287 LKPAQKNFNHLKNEWEIFLEATSTVDLCT 315 (653)
Q Consensus 287 V~~a~~~f~~~~~~yei~f~~~T~I~~~~ 315 (653)
+..-+ ...+|.+++.+.|+...
T Consensus 74 v~~~~-------G~~~L~v~~~~~I~~~~ 95 (109)
T 2kbn_A 74 VGEYN-------DRFQVQVNKNSSIEKLS 95 (109)
T ss_dssp EEEET-------TEEEEEECSSSEEEECS
T ss_pred EEEEC-------CEEEEEECCceEEEECC
Confidence 87754 35999999999999874
No 20
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=98.41 E-value=4.4e-07 Score=83.33 Aligned_cols=101 Identities=14% Similarity=0.145 Sum_probs=79.1
Q ss_pred cccceecchhhhhhcccCccccEEEEEEEecCce---eEEecCCc------eeeEEEEEEEeCCCCEEEEEEccchhhhh
Q 006263 323 KQQFSFRHISEIESAENNSIVDVIGIVISVNPSV---PILRKNGM------ETQRRILNLKDTSGRSVELTLWGDFCNKE 393 (653)
Q Consensus 323 ~~~f~f~~i~~i~~~~~~~~vDVIGvV~~v~~~~---~i~~k~g~------~~~kr~i~l~D~s~~~i~vtLWg~~A~~~ 393 (653)
...-.|++|.||..- ..-+++.|.|.+++++. +..+++|. +...+++.|.|+|| .|.+|||++++..
T Consensus 11 ~~kp~~~kI~dL~pg--~~~v~l~~kVl~~~~v~~~~~~~R~dG~~~~~~r~~~V~~~lVgDeTG-~I~ftlW~e~~~~- 86 (145)
T 1wjj_A 11 KRKPVFVKVEQLKPG--TTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDETG-CILFTARNDQVDL- 86 (145)
T ss_dssp CCCCSSCCSTTCCTT--CCCEEEEEEEEEEEECCSSSSCCSCSSCCSSCCCCCCCEEEEEECSSC-EEEEEECTTHHHH-
T ss_pred ccCccceEHHHcCCC--CCceEEEEEEEEcccccccccccccCCccccccCCceEEEEEEEcCCc-EEEEEEecCCcCc-
Confidence 445678999999752 34699999999999865 33223564 56778999999999 8999999998643
Q ss_pred hhhHHHhhccCCCcEEEEEeeEeecCCCc-eeccccceEEEEcC
Q 006263 394 GQKLQEMVDVGFFPVLSVKSGKVNDFSGK-SIGTIPSTQLFINP 436 (653)
Q Consensus 394 ~~~l~~~~~~~~~~Vvaik~~rV~~f~G~-sLs~~~~S~i~inP 436 (653)
+ ..+.+|-|+++.++.|+|+ .|+....++|...+
T Consensus 87 -------l--~~Gd~v~i~na~v~~~~G~~~L~vgk~g~Ie~~~ 121 (145)
T 1wjj_A 87 -------M--KPGATVILRNSRIDMFKGTMRLGVDKWGRIEATG 121 (145)
T ss_dssp -------T--CTTCEEEEEEEEEEEETTEEEEEECTTCCBCCCS
T ss_pred -------C--CCCCEEEEeccEEEeECCEEEEEECCCEEEEECC
Confidence 3 2689999999999999996 88888877776543
No 21
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=98.40 E-value=1e-05 Score=83.65 Aligned_cols=226 Identities=10% Similarity=0.077 Sum_probs=138.8
Q ss_pred CcceeccccCCCCCceEEEEEEEeeccccccccCCCCceeEEEEEEeCCCCeEEEEEchhHHHHHHhhcccCcEEEEece
Q 006263 206 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKG 285 (653)
Q Consensus 206 ~~~~pI~~L~p~~~~w~I~~RV~~k~~ir~~~~~~g~gk~f~~~L~D~~g~~I~at~f~~~~~kf~~~l~eG~vy~is~~ 285 (653)
..++||++|.. ...-.|.|.|+.....+.- +|..-..+|.|.|..-..|++.+|.+..+.+=....+|+|+.++++
T Consensus 4 y~y~~l~~l~~-~~~vnvigVV~~~~~p~~s---~G~d~~~tl~I~D~S~~gl~v~iF~~~~~~LP~v~~~GDII~l~~v 79 (294)
T 1xjv_A 4 YIYTPLNQLKG-GTIVNVYGVVKFFKPPYLS---KGTDYCSVVTIVDQTNVKLTCLLFSGNYEALPIIYKNGDIVRFHRL 79 (294)
T ss_dssp CCCCCGGGCCS-SEEEEEEEEEEEEEEEEEC---SSSSEEEEEEEECTTCCEEEEEEEESSGGGSCCCCSTTCEEEEEEE
T ss_pred ceEEEHHHhhC-CCeeEEEEEEEEcCCCccC---CCCeEEEEEEEEcCCCCCEEEEEECCChHHCCCCCCCCCEEEEEEE
Confidence 45889999965 4568999999988776543 4556789999999777779999999766555555699999999999
Q ss_pred EEecCCCcccCCCCceEEEeccccEEEeccCCC-CC-CCcc---cceec----------------------chhhhhhcc
Q 006263 286 SLKPAQKNFNHLKNEWEIFLEATSTVDLCTEED-DS-IPKQ---QFSFR----------------------HISEIESAE 338 (653)
Q Consensus 286 ~V~~a~~~f~~~~~~yei~f~~~T~I~~~~d~~-~~-iP~~---~f~f~----------------------~i~~i~~~~ 338 (653)
+|+.-+.. ..+..+....+-...... .. .|.. .|.|. ++..|.++.
T Consensus 80 ki~~~~g~-------~~~v~~~~~s~~~f~g~~~~~~~p~~~~~~~~~~~~e~~~~~~Lr~w~~~~~~~~~~~~~L~di~ 152 (294)
T 1xjv_A 80 KIQVYKKE-------TQGITSSGFASLTFEGTLGAPIIPRTSSKYFNFTTEDHKMVEALRVWASTHMSPSWTLLKLCDVQ 152 (294)
T ss_dssp EEEEETTE-------EEEEEEEEEEEEEECCSTTCCCCCBCSCSSCCCCHHHHHHHHHHHHHHHHHCC---CCCCGGGCC
T ss_pred EEEEECCe-------EEEEccCCeEEEEECCCCCCCcCCcccCCCcCCCHHHHHHHHHHHHHHHhccCCCCceeEHHHcc
Confidence 99865433 222223322222221111 11 1211 12121 222444455
Q ss_pred cCccccEEEEEEEecCce--eEE--ecCCceeeEEEEEEEeC--------------CCCEEEEEEccchhhhhhhhHHHh
Q 006263 339 NNSIVDVIGIVISVNPSV--PIL--RKNGMETQRRILNLKDT--------------SGRSVELTLWGDFCNKEGQKLQEM 400 (653)
Q Consensus 339 ~~~~vDVIGvV~~v~~~~--~i~--~k~g~~~~kr~i~l~D~--------------s~~~i~vtLWg~~A~~~~~~l~~~ 400 (653)
.+..+|+++.|+.+.... .+. ..+|+......+...++ ...++.|++|++.|.- +.
T Consensus 153 ~~~f~DLv~qVv~v~~~~~~~~~LyVwDgT~~~~~~~~~~~~~~~~~gd~~~~~~~~~lt~~V~~~d~h~~~-----~~- 226 (294)
T 1xjv_A 153 PMQYFDLTCQLLGKAEVDGASFLLKVWDGTRTPFPSWRVLIQDLVLEGDLSHIHRLQNLTIDILVYDNHVHV-----AR- 226 (294)
T ss_dssp SSCEEEEEEEEEEEEECSSSEEEEEEECSSCCSSCBCCCCCCSSCCEECHHHHHHHGGGSEEEEEETTHHHH-----HH-
T ss_pred cCCeeeEEEEEEEEEecCCCeEEEEEECCCCCCCCccccccccccccCcccccccccCeeEEEEEEcchhHH-----Hh-
Confidence 678999999999886431 111 12443322111111111 1137999999999842 22
Q ss_pred hccCCCcEEEEEeeEeecC--------CCc---ee--ccccceEEEEcC-ChHHHHHHHHHHh
Q 006263 401 VDVGFFPVLSVKSGKVNDF--------SGK---SI--GTIPSTQLFINP-DFAEAHELREWFD 449 (653)
Q Consensus 401 ~~~~~~~Vvaik~~rV~~f--------~G~---sL--s~~~~S~i~inP-dipe~~~l~~w~~ 449 (653)
....+..|.|++++++.- +|. .| .....++|.+-| +.+.+.++++++.
T Consensus 227 -~lk~Gd~V~l~Nv~~k~~~~~~~~~~~~~le~~lh~~~~~~~~i~~l~~~~~~~~~~~~~~~ 288 (294)
T 1xjv_A 227 -SLKVGSFLRIYSLHTKLQSMNSENQTMLSLEFHLHGGTSYGRGIRVLPESNSDVDQLKKDLE 288 (294)
T ss_dssp -HCCTTCEEEEEEEEEEEEEECTTSCEEEEEEEEECSSCGGGCEEEEECTTSHHHHHHHHHHH
T ss_pred -cCCCCcEEEEeeeEEEecccccccCCCcceEEEEecCcccCcEeEEecCCCCCHHHHHHHHh
Confidence 235789999999988643 221 12 133457787777 6678888887765
No 22
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=98.30 E-value=2.5e-06 Score=74.86 Aligned_cols=90 Identities=13% Similarity=0.190 Sum_probs=68.8
Q ss_pred ecchhhhhhcccCccccEEEEEEEecCceeEEecCCceeeEEEEEEEeCCCCEEEEEEccchhhhhhhhHHHhhccCCCc
Q 006263 328 FRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFP 407 (653)
Q Consensus 328 f~~i~~i~~~~~~~~vDVIGvV~~v~~~~~i~~k~g~~~~kr~i~l~D~s~~~i~vtLWg~~A~~~~~~l~~~~~~~~~~ 407 (653)
|++|+||.. .+..|++.|.|.++++. +.+. ..+.+.|.|+|| +|++|||++.+.. .+ ..+.
T Consensus 5 ~~kI~dl~~--~~~~v~v~~~V~~~~~~-----~~~~--~~~~~~l~DeTG-~I~~t~W~~~~~~-------~~--~~G~ 65 (109)
T 2kbn_A 5 LTKIVDIVE--NGQWANLKAKVIQLWEN-----THES--ISQVGLLGDETG-IIKFTIWKNAELP-------LL--EQGE 65 (109)
T ss_dssp BCCTTTCCS--TTCEEEEEEEEEEEEEC-----CCSS--EEEEEEEECTTC-CEEEEEEGGGCCC-------CC--CTTC
T ss_pred ceEHHHCCC--CCCcEEEEEEEEEeEcC-----CCCe--EEEEEEEECCCC-eEEEEEECccccc-------cc--CCCC
Confidence 556676653 25679999999999863 2333 457899999999 8999999944221 12 3689
Q ss_pred EEEEEeeEeecCCCc-eeccccceEEEEcC
Q 006263 408 VLSVKSGKVNDFSGK-SIGTIPSTQLFINP 436 (653)
Q Consensus 408 Vvaik~~rV~~f~G~-sLs~~~~S~i~inP 436 (653)
+|-|+++++.+|+|+ +|+....+.|..-+
T Consensus 66 ~V~i~n~~v~~~~G~~~L~v~~~~~I~~~~ 95 (109)
T 2kbn_A 66 SYLLRSVVVGEYNDRFQVQVNKNSSIEKLS 95 (109)
T ss_dssp EEEEEEEEEEEETTEEEEEECSSSEEEECS
T ss_pred EEEEEEEEEEEECCEEEEEECCceEEEECC
Confidence 999999999999995 89888888887543
No 23
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A
Probab=98.29 E-value=0.00025 Score=77.99 Aligned_cols=338 Identities=13% Similarity=0.113 Sum_probs=193.6
Q ss_pred CCCcceeccccCC-CCCceEEEEEEEeeccccccccCCCCceeEEEEEEeCCCC-------eE-----EEEEchhHHHHH
Q 006263 204 APARIIPIAALNP-YQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGG-------EI-----RVTCFNAVVDRF 270 (653)
Q Consensus 204 ~~~~~~pI~~L~p-~~~~w~I~~RV~~k~~ir~~~~~~g~gk~f~~~L~D~~g~-------~I-----~at~f~~~~~kf 270 (653)
.+..+++|+++.- ....-.|.|-|+.....+. .+|..-..+|.|.|..-. .| .+.+|.+..+.+
T Consensus 34 ~~y~y~~L~~a~~~~~~~VnviGVVvd~~~P~~---T~G~D~~~t~tI~D~S~~~~~~~~~Gl~~~~~~v~iF~~~~e~L 110 (495)
T 1jb7_A 34 HKYEYVELAKASLTSAQPQHFYAVVIDATFPYK---TNQERYICSLKIVDPTLYLKQQKGAGDASDYATLVLYAKRFEDL 110 (495)
T ss_dssp --CCBCCTTTSCSSCCSCEEEEEEEEEECCCEE---CSSSCEEEEEEEEBTTBSBCCTTSSCSCBCCEEEEEEESSGGGS
T ss_pred CCCccEEHHHHHhccCCeEEEEEEEeecCCcee---cCCCeEEEEEEEEeCCCCcccccccccccCceEEEEECCChHHC
Confidence 4457899997742 2446789999998877764 245556889999995333 47 999998754433
Q ss_pred Hhhc-ccCcEEEEeceEEecCCCcccC-CCCce---EEEeccccEEE----eccC-CCCCCCc----ccceec-------
Q 006263 271 YEII-EVGRVYLISKGSLKPAQKNFNH-LKNEW---EIFLEATSTVD----LCTE-EDDSIPK----QQFSFR------- 329 (653)
Q Consensus 271 ~~~l-~eG~vy~is~~~V~~a~~~f~~-~~~~y---ei~f~~~T~I~----~~~d-~~~~iP~----~~f~f~------- 329 (653)
+.+ .+|+|+.+++++|+.-+....- ....+ =..|....... ..+. .....|. ..|.|.
T Consensus 111 -P~V~~~GDII~LhrvkIq~~ng~~~~v~~~~~~SswavF~~~~~~~~~~i~~~~~~~~~~P~~~S~~~~~~~~~d~~~v 189 (495)
T 1jb7_A 111 -PIIHRAGDIIRVHRATLRLYNGQRQFNANVFYSSSWALFSTDKRSVTQEINNQDAVSDTTPFSFSSKHATIEKNEISIL 189 (495)
T ss_dssp -CCCCEETCEEEEEEEEEEEETTEEEEEEETTTTCEEEEECSSSSCHHHHHHTCCCSCTTSCSEESSSCCCCCTTHHHHH
T ss_pred -CCCCCCCCEEEEEEEEEEEECCcEEEEecCCCceEEEEEeCCccccccccCCcccCcccCCccccCCCccCCHHHHHHH
Confidence 445 7999999999999876654321 11111 13343333000 0000 0111221 112221
Q ss_pred --------------------chhhhh-hcccCccccEEEEEEEecCceeEEecCCceeeEEEEEEEeCCCCEEEEEEccc
Q 006263 330 --------------------HISEIE-SAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGD 388 (653)
Q Consensus 330 --------------------~i~~i~-~~~~~~~vDVIGvV~~v~~~~~i~~k~g~~~~kr~i~l~D~s~~~i~vtLWg~ 388 (653)
++..|. ++..+..+|++|.|+.+.... + .+-.+.+-|.|+.. .++++..
T Consensus 190 ~~LR~W~~~~~~~~~~~~~~~f~~L~~di~~~~f~DLv~qVv~~~~~d------~---~~~~L~VwDgT~~~-~~~~~~~ 259 (495)
T 1jb7_A 190 QNLRKWANQYFSSYSVISSDMYTALNKAQAQKGDFDVVAKILQVHELD------E---YTNELKLKDASGQV-FYTLSLK 259 (495)
T ss_dssp HHHHHHHHHHHHHSCSSCGGGSCCGGGGGGCSSCEEEEEEEEEEEECS------S---SEEEEEEEETTCCE-EEEEEET
T ss_pred HHHHHHHHhcccccccccccchhhhhhhhccCCceeEEEEEeEEeccC------C---CeEEEEEEeCCCCC-cceeecc
Confidence 222333 445678999999999986541 1 34677888988843 3333332
Q ss_pred hhhhhhhhHHHhhccCC--CcEEEEEeeEeecCCC----ceeccccceEEEEcCChHHHHHHHHHHhcCCCccceeeccc
Q 006263 389 FCNKEGQKLQEMVDVGF--FPVLSVKSGKVNDFSG----KSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISR 462 (653)
Q Consensus 389 ~A~~~~~~l~~~~~~~~--~~Vvaik~~rV~~f~G----~sLs~~~~S~i~inPdipe~~~l~~w~~~~g~~~~~~sls~ 462 (653)
. .| ... +.|+-|...+..+-.+ ..++-. .-...+.|.-....++++++.... ...-..+..
T Consensus 260 ~----------~f-P~~~~G~Vlri~~~~~de~~~~l~~~~~~~w-~ni~~~~~~sk~~ke~~~~~l~~~-~~~~~~~~~ 326 (495)
T 1jb7_A 260 L----------KF-PHVRTGEVVRIRSATYDETSTQKKVLILSHY-SNIITFIQSSKLAKELRAKIQDDH-SVEVASLKK 326 (495)
T ss_dssp T----------TC-TTCCTTCEEEEEEEEECTTCCSSCEEEEEEE-EEEEEECTTCHHHHHHHHHSCCCC-HHHHHHTTS
T ss_pred c----------cC-CceeeEEEEEEecCccchhhhhhhhhccccc-cceeEEcccchhhhhhhhcccchh-hhhhhhccc
Confidence 2 12 123 7888888887765333 112222 112245555555567777755433 000000100
Q ss_pred cc-------c--cCCCCcchhccHHhhhhcCCCCCCC-C-cEEEEEEEEEEEeC-C--ceEEecCCCCcCcccccceeee
Q 006263 463 EI-------A--AGGAKNEIHKTVSQIKNEGLGRSEK-P-DWVTVRAFITFIKS-D--SFCYTACPLMIGDRQCNKKVTQ 528 (653)
Q Consensus 463 ~~-------~--~~~~~~~~~kti~~i~~~~lg~~~~-~-~~~~v~atI~~i~~-d--~~~Y~aC~~~~~~~~C~KKv~~ 528 (653)
.. + -..-......||.||....-...+- . ..|.|.+.|+.+-+ + .|.=+-|+ .|.+. ..
T Consensus 327 ~~~~~~~~lT~~~~~~~~~p~ttL~dIL~~~~~~~~v~~K~~fr~~VRVV~~~P~~i~df~~~~~~------~~~~~-~s 399 (495)
T 1jb7_A 327 NVSLNAVVLTEVDKKHAALPSTSLQDLFHHADSDKELQAQDTFRTQFYVTKIEPSDVKEWVKGYDR------KTKKS-SS 399 (495)
T ss_dssp SSCSSCEECEEECGGGTTSCBCCHHHHHHTTTTCHHHHTCSEEEEEEEEEEEESSSGGGGEEEEET------TTTEE-EC
T ss_pred ccCCCCCcCCeecccCCCCCcEEHHHHhcCcccCccccccccEEEEEEEEEecCCCHHHhhhhhcc------ccccc-cc
Confidence 00 0 0000122346899997642100011 1 23888888887654 3 67766688 88876 22
Q ss_pred cCceeecccCccccCCceEEEEEEEEEEeCC-------CeEEEEEechhhhhhhCCCHHHHHH
Q 006263 529 SGNRWQCDRCNQEIDECDYRYLLQAQIQDQT-------GLTWVTAFQESGEEILGCPAKELYM 584 (653)
Q Consensus 529 ~~~~~~C~kC~~~~~~~~~rY~l~~~i~D~T-------g~~~~~~F~~~ae~llG~sA~el~~ 584 (653)
. +.+|.+. .+.|++.+.|.|.| +.+.+.++|+.|.++|+++|.+|..
T Consensus 400 ~-----~g~~~~~----~~~~~f~LlveD~t~~~~~~~~ri~l~v~g~~~a~Fl~l~a~nL~~ 453 (495)
T 1jb7_A 400 L-----KGASGKG----DNIFQVQFLVKDASTQLNNNTYRVLLYTQDGLGANFFNVKADNLHK 453 (495)
T ss_dssp S-----TTCGGGC----EEEEEEEEEEECGGGTTBSEEEEEEEECTTSTTTTTTSSCCCCTTT
T ss_pred c-----ccccCCC----CceEEEEEEEecCCCCCCCcccEEEEEEeCcchheecCCChHhhhc
Confidence 1 1234442 46788999999999 9999999999999999999998844
No 24
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=98.20 E-value=2.2e-05 Score=85.90 Aligned_cols=177 Identities=15% Similarity=0.057 Sum_probs=118.9
Q ss_pred ecchhhhhhcccCccccEEEEEEEecCceeEEecCCceeeEEEEEEEeCCCCEEEEEEccchhhhhhhhHHHhhccCCCc
Q 006263 328 FRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFP 407 (653)
Q Consensus 328 f~~i~~i~~~~~~~~vDVIGvV~~v~~~~~i~~k~g~~~~kr~i~l~D~s~~~i~vtLWg~~A~~~~~~l~~~~~~~~~~ 407 (653)
|++|++|... ....-|.|.|+..+++..+...+| +....++.|.|++| .|++|+|++.+..|...| ..|.
T Consensus 3 ~~~I~~L~p~--~~~w~I~~rV~~k~~ir~~~~~~~-~g~~~~~~L~De~G-~I~at~~~~~~~~f~~~l------~eG~ 72 (444)
T 4gop_C 3 IYPIEGLSPY--QNRWTIKARVTSKSDIRHWSNQRG-EGKLFSVNLLDDSG-EIKATGFNDAVDRFYPLL------QENH 72 (444)
T ss_dssp CCCSTTCCTT--CCSCEEEEECCEECCCEEEECSSC-EEEEEEEEEECSSC-EEEEEEETHHHHHHTTTC------CTTC
T ss_pred ceeHHHCCCC--CcceEEEEEEEEccCcceecCCCC-CceEEEEEEEcCCC-EEEEEEeHHHHHHHHHhe------ecCC
Confidence 6777887643 246799999999999998875544 34567899999999 999999999988764332 3689
Q ss_pred EEEEEeeEeecCCCc--------eeccccceEEEEcCChHHHHHHHHHHhcCCCccceeecccccccCCCCcchhccHHh
Q 006263 408 VLSVKSGKVNDFSGK--------SIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQ 479 (653)
Q Consensus 408 Vvaik~~rV~~f~G~--------sLs~~~~S~i~inPdipe~~~l~~w~~~~g~~~~~~sls~~~~~~~~~~~~~kti~~ 479 (653)
|+.|.+++|+..+++ .|.....|.|..-++.+ . +.. ......+|++
T Consensus 73 vy~Is~~~V~~~~~~y~~~~~~~ei~~~~~T~V~~~~d~~--------------~-----iP~-------~~~~f~~i~~ 126 (444)
T 4gop_C 73 VYLISKARVNIAKKQFSNLQNEYEITFENSTEIEECTDAT--------------D-----VPE-------VKYEFVRINE 126 (444)
T ss_dssp EEEEESCEEEECCGGGCSCCCSEEEEECTTCEEEECSCCS--------------S-----SCC-------CCCCBCCGGG
T ss_pred EEEEcCCEEEecCCccccCCCCEEEEEcCCcEEEEccCcc--------------c-----Ccc-------eeecccCHHH
Confidence 999999999865432 35555667776554321 0 000 1123466788
Q ss_pred hhhcCCCCCCCCcEEEEEEEEEEEeCCceEEecCCCCcCcccccceeeecCceeecccCccccCCceEEEEEEEEEEeCC
Q 006263 480 IKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQT 559 (653)
Q Consensus 480 i~~~~lg~~~~~~~~~v~atI~~i~~d~~~Y~aC~~~~~~~~C~KKv~~~~~~~~C~kC~~~~~~~~~rY~l~~~i~D~T 559 (653)
|.+. +....+.|.|.|..+..-. .+ .... .-....+..+.|.|.|
T Consensus 127 i~~~-----~~~~~vDViG~V~~v~~~~-~i-----------------------~~k~------~g~~~~kr~i~L~D~s 171 (444)
T 4gop_C 127 LESV-----EANQQCDVIGILDSYGELS-EI-----------------------VSKA------SQRPVQKRELTLVDQG 171 (444)
T ss_dssp GGGS-----CSSCCCBEEEEEEEECCCE-EE-----------------------CCTT------TCSCEEEEEEEEECTT
T ss_pred Hhcc-----CCCCceEEEEEEEEcCCcE-EE-----------------------EEcc------CCceeeEEEEEEEeCC
Confidence 8752 2224566889888885311 00 0000 0112346789999999
Q ss_pred C-eEEEEEechhhhhhh
Q 006263 560 G-LTWVTAFQESGEEIL 575 (653)
Q Consensus 560 g-~~~~~~F~~~ae~ll 575 (653)
| .+.+++|++.|+.+-
T Consensus 172 g~~i~~tLWg~~A~~f~ 188 (444)
T 4gop_C 172 NRSVKLTLWGKTAETFP 188 (444)
T ss_dssp CBEEEEEEEHHHHHTST
T ss_pred CCEEEEEEEhhhhhhhh
Confidence 9 799999999998653
No 25
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.13 E-value=1.6e-05 Score=70.26 Aligned_cols=101 Identities=18% Similarity=0.116 Sum_probs=76.2
Q ss_pred eecchhhhhhcccCccccEEEEEEEecCceeEEecCCceeeEEEEEEEeCCCCEEEEEEccchhhhhhhhHHHhhccCCC
Q 006263 327 SFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFF 406 (653)
Q Consensus 327 ~f~~i~~i~~~~~~~~vDVIGvV~~v~~~~~i~~k~g~~~~kr~i~l~D~s~~~i~vtLWg~~A~~~~~~l~~~~~~~~~ 406 (653)
++++|++|.... .-.-+.|.|+..+++..+..++| +....++.|.|++| +|++|+|++.|..|...| ..|
T Consensus 3 ~~~~Is~L~p~~--~~w~I~~rV~~k~~~r~~~~~~~-~g~~~~~~L~De~G-~I~at~~~~~~~~f~~~l------~eG 72 (114)
T 1ynx_A 3 PIFAIEQLSPYQ--NVWTIKARVSYKGEIKTWHNQRG-DGKLFNVNFLDTSG-EIRATAFNDFATKFNEIL------QEG 72 (114)
T ss_dssp CBCCGGGCCTTT--CCCEEEEEEEEEEEEEEEECSSC-EEEEEEEEEEETTE-EEEEEECHHHHHHHHHHS------CSS
T ss_pred ceEEHHHCCCCC--CceEEEEEEEEeccceEEecCCC-CceEEEEEEECCCC-eEEEEECHHHHHHHHhhc------ccC
Confidence 467888886432 34889999999999999886654 45677899999999 999999999998864433 368
Q ss_pred cEEEEEeeEeecCCC--------ceeccccceEEEEcCC
Q 006263 407 PVLSVKSGKVNDFSG--------KSIGTIPSTQLFINPD 437 (653)
Q Consensus 407 ~Vvaik~~rV~~f~G--------~sLs~~~~S~i~inPd 437 (653)
.|+.|.+++|+.-++ -.|.....|.|..-+|
T Consensus 73 ~vy~Is~~~V~~a~~~y~~~~~~yei~f~~~T~I~~~~d 111 (114)
T 1ynx_A 73 KVYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVIEECFD 111 (114)
T ss_dssp SEEEEESCEEEECCTTTSSSSSCEEEEECSSCEEEESCC
T ss_pred cEEEECCcEEEECCCCcccCCCCEEEEECCCCEEEECCC
Confidence 999999999975322 1455666677765554
No 26
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=97.96 E-value=6.7e-05 Score=77.54 Aligned_cols=143 Identities=10% Similarity=0.147 Sum_probs=96.1
Q ss_pred cceecchhhhhhcccCccccEEEEEEEecCceeEEecCCceeeEEEEEEEeCCCCEEEEEEccchhhhhhhhHHHhhccC
Q 006263 325 QFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVG 404 (653)
Q Consensus 325 ~f~f~~i~~i~~~~~~~~vDVIGvV~~v~~~~~i~~k~g~~~~kr~i~l~D~s~~~i~vtLWg~~A~~~~~~l~~~~~~~ 404 (653)
.|.|++|++|. .+..|+|||+|+++++... + .|+ --...|+|.|.|...|.|.+|.+....+ .. + ..
T Consensus 3 ~y~y~~l~~l~---~~~~vnvigVV~~~~~p~~--s-~G~-d~~~tl~I~D~S~~gl~v~iF~~~~~~L----P~-v-~~ 69 (294)
T 1xjv_A 3 NYIYTPLNQLK---GGTIVNVYGVVKFFKPPYL--S-KGT-DYCSVVTIVDQTNVKLTCLLFSGNYEAL----PI-I-YK 69 (294)
T ss_dssp CCCCCCGGGCC---SSEEEEEEEEEEEEEEEEE--C-SSS-SEEEEEEEECTTCCEEEEEEEESSGGGS----CC-C-CS
T ss_pred cceEEEHHHhh---CCCeeEEEEEEEEcCCCcc--C-CCC-eEEEEEEEEcCCCCCEEEEEECCChHHC----CC-C-CC
Confidence 47899999873 5788999999999987743 2 354 4578999999998889999998764442 21 1 14
Q ss_pred CCcEEEEEeeEeecCCCc-ee-ccccceEEEEcCC--------------------hHHHHHHHHHHhcCCCccceeeccc
Q 006263 405 FFPVLSVKSGKVNDFSGK-SI-GTIPSTQLFINPD--------------------FAEAHELREWFDSGGKNAATVSISR 462 (653)
Q Consensus 405 ~~~Vvaik~~rV~~f~G~-sL-s~~~~S~i~inPd--------------------ipe~~~l~~w~~~~g~~~~~~sls~ 462 (653)
.|.||.+++++|..|+|+ .+ +....+.+.+++. ..-+..||.|+.+.. +.
T Consensus 70 ~GDII~l~~vki~~~~g~~~~v~~~~~s~~~f~g~~~~~~~p~~~~~~~~~~~~e~~~~~~Lr~w~~~~~--------~~ 141 (294)
T 1xjv_A 70 NGDIVRFHRLKIQVYKKETQGITSSGFASLTFEGTLGAPIIPRTSSKYFNFTTEDHKMVEALRVWASTHM--------SP 141 (294)
T ss_dssp TTCEEEEEEEEEEEETTEEEEEEEEEEEEEEECCSTTCCCCCBCSCSSCCCCHHHHHHHHHHHHHHHHHC--------C-
T ss_pred CCCEEEEEEEEEEEECCeEEEEccCCeEEEEECCCCCCCcCCcccCCCcCCCHHHHHHHHHHHHHHHhcc--------CC
Confidence 689999999999999996 33 2222222334431 123567999986421 00
Q ss_pred ccccCCCCcchhccHHhhhhcCCCCCCCCcEEEEEEEEEEEe
Q 006263 463 EIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIK 504 (653)
Q Consensus 463 ~~~~~~~~~~~~kti~~i~~~~lg~~~~~~~~~v~atI~~i~ 504 (653)
......|+||++. .||.+.|.|..+-
T Consensus 142 --------~~~~~~L~di~~~--------~f~DLv~qVv~v~ 167 (294)
T 1xjv_A 142 --------SWTLLKLCDVQPM--------QYFDLTCQLLGKA 167 (294)
T ss_dssp ----------CCCCGGGCCSS--------CEEEEEEEEEEEE
T ss_pred --------CCceeEHHHcccC--------CeeeEEEEEEEEE
Confidence 0112356666542 4899999999764
No 27
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A
Probab=97.59 E-value=0.00025 Score=67.47 Aligned_cols=89 Identities=18% Similarity=0.283 Sum_probs=70.2
Q ss_pred ceecchhhhhh-cccCccccEEEEEEEecCceeEEecCCceeeEEEEEEEeCC----CCEEEEEEccchhhhhhhhHHHh
Q 006263 326 FSFRHISEIES-AENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTS----GRSVELTLWGDFCNKEGQKLQEM 400 (653)
Q Consensus 326 f~f~~i~~i~~-~~~~~~vDVIGvV~~v~~~~~i~~k~g~~~~kr~i~l~D~s----~~~i~vtLWg~~A~~~~~~l~~~ 400 (653)
+.|+++.++.+ +..+..|||||||+++++... +..|+.--...|+|.|.| +..|.|.++.+..... ..
T Consensus 27 ~~~~~~r~~l~~~~~g~~VNviGVVvd~~~P~~--S~rGtkD~~~TltI~D~S~~~~~~gL~v~iF~~~~e~L----P~- 99 (187)
T 1qzg_A 27 LTFQSIRSSQELQKKNTIVNLFGIVKDFTPSRQ--SLHGTKDWVTTVYLWDPTCDTSSIGLQIHLFSKQGNDL----PV- 99 (187)
T ss_dssp EEEECHHHHTSCCSSCEEEEEEEEEEEEEEEEE--CSSTTCCEEEEEEEECTTSCTTSCCEEEEEEESSSSCS----CC-
T ss_pred eeEEEHHHHHhhccCCCEEEEEEEEEEccCcee--cCCCCccEEEEEEEEeCCCCCCCCceEEEEECCChhhC----CC-
Confidence 67899999876 567899999999999999853 213554567899999998 5689999998875442 21
Q ss_pred hccCCCcEEEEEeeEeecCCCc
Q 006263 401 VDVGFFPVLSVKSGKVNDFSGK 422 (653)
Q Consensus 401 ~~~~~~~Vvaik~~rV~~f~G~ 422 (653)
. ...|+||.+++++|..|+|.
T Consensus 100 V-~~~GDIIlL~rvkiq~~~g~ 120 (187)
T 1qzg_A 100 I-KQVGQPLLLHQITLRSYRDR 120 (187)
T ss_dssp C-CSTTCEEEEEEEEEEEETTE
T ss_pred C-CCCCCEEEEEEEEEEEECCe
Confidence 1 14689999999999999996
No 28
>3u58_A Tetrahymena TEB1 AB; tetrahymena, telomerase, TEB1, processivity factor, DNA BIND protein-DNA complex; HET: DNA; 2.61A {Tetrahymena thermophila}
Probab=97.46 E-value=0.017 Score=51.05 Aligned_cols=158 Identities=23% Similarity=0.354 Sum_probs=111.4
Q ss_pred eeccccCCCCCc--eEEEEEEEeeccccccccCCCCceeEEEEEEeCCCCeEEEEEchhHHHHHHhhcccCcEEEEeceE
Q 006263 209 IPIAALNPYQGR--WAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGS 286 (653)
Q Consensus 209 ~pI~~L~p~~~~--w~I~~RV~~k~~ir~~~~~~g~gk~f~~~L~D~~g~~I~at~f~~~~~kf~~~l~eG~vy~is~~~ 286 (653)
..|+.|..+.++ +...+||+.|+. +|.|.. +.+.|-+.-.|+..-+|...+|.. +|.-|..|++|+-|++-++.
T Consensus 12 llisqlqvgknrfsfkfegrvvykss--tfqnqq-dskyffitaqdannqeinlsfwqk-vdqsyqtlkvgqyyyfigge 87 (213)
T 3u58_A 12 LLISQLQVGKNRFSFKFEGRVVYKSS--TFQNQQ-DSKYFFITAQDANNQEINLSFWQK-VDQSYQTLKVGQYYYFIGGE 87 (213)
T ss_dssp ECGGGCCTTSCTTSEEEEEEEEEECC--CBCCST-TCCBEEEEEECTTSCEEEEEECSS-HHHHHHHCCTTCEEEEESCE
T ss_pred hhhhhhhhccceeeEEeeeEEEEeec--cccccc-cccEEEEEeecCCCceechHHHHH-hhhhhheeeeceEEEEEccc
Confidence 467888877764 668899999987 788764 568899999999999999999987 68888999999999999999
Q ss_pred EecCCCcccCCCCceEEEeccc-cEEEeccCCCCCCCcccceecchhhhhhcccCccccEEEEEEEecCceeEEecCCce
Q 006263 287 LKPAQKNFNHLKNEWEIFLEAT-STVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGME 365 (653)
Q Consensus 287 V~~a~~~f~~~~~~yei~f~~~-T~I~~~~d~~~~iP~~~f~f~~i~~i~~~~~~~~vDVIGvV~~v~~~~~i~~k~g~~ 365 (653)
|+.-. +..|+.|.-. -.|.+-+.-.++ .=.-.-|+++... ......|++.|+++.... +
T Consensus 88 vkqfk-------nnlelkfkfgdyqiipketlggs----ggstllisevlkt-skqylsvlaqvvdiqssd-------k- 147 (213)
T 3u58_A 88 VKQFK-------NNLELKFKFGDYQIIPKETLGGS----GGSTLLISEVLKT-SKQYLSVLAQVVDIQSSD-------K- 147 (213)
T ss_dssp EEECS-------SSEEEEECSSCCEEEESTTTTCS----TTCCBCHHHHTTC-CCSEEEEEEEEEEEEECS-------S-
T ss_pred Hhhhc-------cceEEEEecCceEEechhhcCCC----CCceeehHHHHHH-hHHHHHHHHHhhccccCC-------C-
Confidence 97532 3477776543 344443211110 0112235555442 345677888887765431 1
Q ss_pred eeEEEEEEEeCCC-CEEEEEEccchhhh
Q 006263 366 TQRRILNLKDTSG-RSVELTLWGDFCNK 392 (653)
Q Consensus 366 ~~kr~i~l~D~s~-~~i~vtLWg~~A~~ 392 (653)
...+.|.|.|. ..+.+.++-+.+-+
T Consensus 148 --nirlkicdnscnqelkvvifpdlcye 173 (213)
T 3u58_A 148 --NIRLKICDNSCNQELKVVIFPDLCYE 173 (213)
T ss_dssp --CEEEEEECTTCSCCEEEEECTTTTGG
T ss_pred --ceEEEeecccccceeEEEEchhHhhH
Confidence 23467889884 78999999998765
No 29
>1miu_A BRCA2, breast cancer type 2 susceptibility protein; tumor suppressor, breast cancer susceptibility, DNA-binding; 3.10A {Mus musculus} SCOP: a.170.1.1 a.171.1.1 b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1iyj_B 1mje_A
Probab=97.36 E-value=0.0017 Score=73.42 Aligned_cols=172 Identities=13% Similarity=0.172 Sum_probs=118.7
Q ss_pred CeEEEEEchhHHHHHHhhcccCcEEEEeceEEecCCCcccCCCCceEEEeccccEEEeccCCCCCCCc-c-cceecchhh
Q 006263 256 GEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPK-Q-QFSFRHISE 333 (653)
Q Consensus 256 ~~I~at~f~~~~~kf~~~l~eG~vy~is~~~V~~a~~~f~~~~~~yei~f~~~T~I~~~~d~~~~iP~-~-~f~f~~i~~ 333 (653)
...-.++|+..-+ ..+.|+||++|.|.+....... .+.-....+|+-.+.|.+.+.+..+..++. + .-..++|++
T Consensus 525 k~~iLSIW~P~ed-l~s~L~EG~~y~iy~L~~s~s~--~~~~~~~lqLtAtk~T~~~~L~~~~~~~~~~~~pR~~~~~~~ 601 (738)
T 1miu_A 525 KSALLSIWRPSSD-LSSLLTEGKRYRIYHLAVSKSK--SKFERPSIQLTATKRTQYQQLPVSSETLLQVYQPRESLHFSR 601 (738)
T ss_dssp CCEEEEEESCCHH-HHHHCCSSCEEEEEEECCCCCC--CSSSCCSCEEEEEEEEEEEEECCCHHHHTTTCCCCCBCCSGG
T ss_pred ceEEEEEeCCChH-HHhhccCCcEEEEEEeeccCCC--ccCccceEEEeecccceeEECCcchhhhccccCCcceeeHHH
Confidence 4777899997644 7788999999999997654443 222334678999999999998532211111 1 113456777
Q ss_pred hhh---cccCccccEEEEEEEecCceeEEecCCceeeEEEEEEEeCCCCEEEEEEccchhhhhhhhHHHhhccCCCcEEE
Q 006263 334 IES---AENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLS 410 (653)
Q Consensus 334 i~~---~~~~~~vDVIGvV~~v~~~~~i~~k~g~~~~kr~i~l~D~s~~~i~vtLWg~~A~~~~~~l~~~~~~~~~~Vva 410 (653)
|.+ .+...-||++|+|+.|+... | ..-.+.|.|.+..-+-|.+|+...++ -..+.+||
T Consensus 602 l~~~~f~p~~~EvDivG~Vv~v~~~~------~---~~~~vylsD~~~nll~Ikf~~~l~eD----------~~~~~~va 662 (738)
T 1miu_A 602 LSDPAFQPPCSEVDVVGVVVSVVKPI------G---LAPLVYLSDECLNLLVVKFGIDLNED----------IKPRVLIA 662 (738)
T ss_dssp GGSSSCCTTTTEEEEEEEEEEEECCT------T---SCCEEEEECSSSCEEEEEESSCCCSC----------CCSSCEEE
T ss_pred hcCccccCCCCceeEEEEEEEEcccC------c---ccceEEEEcCCCcEEEEEEecCchhh----------CccccEEE
Confidence 776 56778999999999997642 2 12367789999889999999998632 24689999
Q ss_pred EEeeEeecCC--Cc-eeccccceEEEEcCC---h-HHHHHHHHHHh
Q 006263 411 VKSGKVNDFS--GK-SIGTIPSTQLFINPD---F-AEAHELREWFD 449 (653)
Q Consensus 411 ik~~rV~~f~--G~-sLs~~~~S~i~inPd---i-pe~~~l~~w~~ 449 (653)
+.+....... |. .|-.+..|.+.-||. . .+.+.|+.-..
T Consensus 663 ~sNL~~r~~~~~~ip~~~a~~~t~fs~~pk~~hl~~~~~~lk~~~~ 708 (738)
T 1miu_A 663 ASNLQCQPESTSGVPTLFAGHFSIFSASPKEAYFQEKVNNLKHAIE 708 (738)
T ss_dssp EEEEECCSCCSSSCCCEEECTTCEEESSCCCTTTHHHHHHHTHHHH
T ss_pred EeeeEeeccccccCceEEeccceEEecCccHhHHHHHHHHHHHhhh
Confidence 9999886432 33 455677788888883 2 33455555443
No 30
>3u4v_A Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 1.80A {Tetrahymena thermophila}
Probab=97.09 E-value=0.0053 Score=49.61 Aligned_cols=88 Identities=27% Similarity=0.475 Sum_probs=71.8
Q ss_pred eeccccCCCCCc--eEEEEEEEeeccccccccCCCCceeEEEEEEeCCCCeEEEEEchhHHHHHHhhcccCcEEEEeceE
Q 006263 209 IPIAALNPYQGR--WAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGS 286 (653)
Q Consensus 209 ~pI~~L~p~~~~--w~I~~RV~~k~~ir~~~~~~g~gk~f~~~L~D~~g~~I~at~f~~~~~kf~~~l~eG~vy~is~~~ 286 (653)
..|+.|..+.++ +...+||+.|+. +|.|.. +.+.|-+.-.|+..-+|..++|.. +|.=|..|++|+.|++-++.
T Consensus 16 llisqlqvgknrfsfkfegrvvykss--tfqnqq-dskyffitaqdannqeinmsfwqk-vdqsyqtlkvgqyyyfigge 91 (117)
T 3u4v_A 16 LLISQLQVGKNRFSFKFEGRVVYKSS--TFQNQQ-DSKYFFITAQDANNQEINMSFWQK-VDQSYQTLKVGQYYYFIGGE 91 (117)
T ss_dssp ECGGGCCTTCCTTSCEEEEEEEEECC--CEECTT-SCEEEEEEEECTTSCEEEEEEESS-THHHHTTCCTTCEEEEESCE
T ss_pred eehhhhhcccceeeEEeeeEEEEeec--cccccc-cccEEEEEeecCCCceechHHHHH-hhhhhheEeeceEEEEEccc
Confidence 468888888764 678899999987 787764 568999999999999999999987 58888999999999999999
Q ss_pred EecCCCcccCCCCceEEEecc
Q 006263 287 LKPAQKNFNHLKNEWEIFLEA 307 (653)
Q Consensus 287 V~~a~~~f~~~~~~yei~f~~ 307 (653)
|+.- .+..|+.|.-
T Consensus 92 vkqf-------knnlelkfkf 105 (117)
T 3u4v_A 92 VKQF-------KNNLELKFKF 105 (117)
T ss_dssp EEEE-------TTEEEEEEET
T ss_pred hhhh-------ccceEEEEec
Confidence 9653 2346666643
No 31
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A
Probab=96.97 E-value=0.0044 Score=68.12 Aligned_cols=89 Identities=10% Similarity=0.135 Sum_probs=65.6
Q ss_pred cccceecchhhhhhcccCccccEEEEEEEecCceeEEecCCceeeEEEEEEEeCCCC-------EE-----EEEEccchh
Q 006263 323 KQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGR-------SV-----ELTLWGDFC 390 (653)
Q Consensus 323 ~~~f~f~~i~~i~~~~~~~~vDVIGvV~~v~~~~~i~~k~g~~~~kr~i~l~D~s~~-------~i-----~vtLWg~~A 390 (653)
...|.|++|+++... .+..|||||||+++++... ++ |+ --...|+|.|.|-. .+ .|.++.+..
T Consensus 33 ~~~y~y~~L~~a~~~-~~~~VnviGVVvd~~~P~~--T~-G~-D~~~t~tI~D~S~~~~~~~~~Gl~~~~~~v~iF~~~~ 107 (495)
T 1jb7_A 33 GHKYEYVELAKASLT-SAQPQHFYAVVIDATFPYK--TN-QE-RYICSLKIVDPTLYLKQQKGAGDASDYATLVLYAKRF 107 (495)
T ss_dssp ---CCBCCTTTSCSS-CCSCEEEEEEEEEECCCEE--CS-SS-CEEEEEEEEBTTBSBCCTTSSCSCBCCEEEEEEESSG
T ss_pred cCCCccEEHHHHHhc-cCCeEEEEEEEeecCCcee--cC-CC-eEEEEEEEEeCCCCcccccccccccCceEEEEECCCh
Confidence 456899999998753 5778999999999998852 32 44 35789999998754 37 999988764
Q ss_pred hhhhhhHHHhhccCCCcEEEEEeeEeecCCCc
Q 006263 391 NKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGK 422 (653)
Q Consensus 391 ~~~~~~l~~~~~~~~~~Vvaik~~rV~~f~G~ 422 (653)
.. |.. . ...|+||.|++++|..|+|+
T Consensus 108 e~----LP~-V-~~~GDII~LhrvkIq~~ng~ 133 (495)
T 1jb7_A 108 ED----LPI-I-HRAGDIIRVHRATLRLYNGQ 133 (495)
T ss_dssp GG----SCC-C-CEETCEEEEEEEEEEEETTE
T ss_pred HH----CCC-C-CCCCCEEEEEEEEEEEECCc
Confidence 33 121 1 02589999999999999996
No 32
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=94.81 E-value=0.82 Score=46.88 Aligned_cols=181 Identities=14% Similarity=0.143 Sum_probs=96.8
Q ss_pred CCceEEEEEEEeeccccccccCCCCceeEEEEEE------eCCC------CeEEEEEchhHHHHHHhh-cccCcEEEEec
Q 006263 218 QGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL------DSDG------GEIRVTCFNAVVDRFYEI-IEVGRVYLISK 284 (653)
Q Consensus 218 ~~~w~I~~RV~~k~~ir~~~~~~g~gk~f~~~L~------D~~g------~~I~at~f~~~~~kf~~~-l~eG~vy~is~ 284 (653)
+++.+|.+||.+.-.+|...+ | ..+.+|.|. |++| .-|++++|+..++.+... |+.|+-++|.+
T Consensus 5 mN~V~LiGrL~~dPelr~t~~--G-~~v~~f~LAv~r~~~~~~G~~~~~t~~i~vv~~g~~Ae~~~~~~l~KG~~V~VeG 81 (301)
T 1se8_A 5 MNHVYLIGALARDPELRYTGN--G-MAVFEATVAGEDRVIGNDGRERNLPWYHRVSILGKPAEWQAERNLKGGDAVVVEG 81 (301)
T ss_dssp EEEEEEEEEESSCCEEEECTT--S-CEEEEEEEEEEEEC-------CEEEEEEEEEEESHHHHHHHHTCCCTTCEEEEEE
T ss_pred eeEEEEEEEECCCceEEECCC--C-CEEEEEEEEEcCceECCCCCEecceEEEEEEEEcHHHHHHHhhCCCCCCEEEEEE
Confidence 467899999999999987643 2 256677663 2223 358999999999999999 99999999997
Q ss_pred eEEecCCCcccC--CCCceEEEeccccEEEeccCCCCCCCcccceecchhhhhhcc-cCccccEEEEEEEecCceeEEec
Q 006263 285 GSLKPAQKNFNH--LKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAE-NNSIVDVIGIVISVNPSVPILRK 361 (653)
Q Consensus 285 ~~V~~a~~~f~~--~~~~yei~f~~~T~I~~~~d~~~~iP~~~f~f~~i~~i~~~~-~~~~vDVIGvV~~v~~~~~i~~k 361 (653)
..- . +.|.. ....|.+.+.-+ .|+.+..... .-.. ....+ .+. .-..|-++|.|..--++. .+.
T Consensus 82 ~L~-~--r~~~dkdG~~r~~~ev~a~-~i~~l~~~~~-~~~d-----~~gg~-rm~~mmN~V~L~GrL~~dPelr--~t~ 148 (301)
T 1se8_A 82 TLE-Y--RQWEAPEGGKRSAVNVKAL-RMEQLGTQPE-LIQD-----AGGGV-RMSGAMNEVLVLGNVTRDPEIR--YTP 148 (301)
T ss_dssp EEE-E--EEEC-----CEEEEEEEEE-EEEECSSCCC-EEEC-----TTSCE-EEETCEEEEEEEEEECSCCEEE--ECT
T ss_pred EEE-e--eeEECCCCCEEEEEEEEEe-EEEEeecccc-cccc-----ccccc-chhcceeEEEEEEEECcCCEEE--ECC
Confidence 432 1 12211 112232222111 2333311000 0000 00000 000 112356778776533332 234
Q ss_pred CCceeeEEEEEE----EeCCCC------EEEEEEccchhhhhhhhHHHhhccCCCcEEEEEe-eEeecCCC
Q 006263 362 NGMETQRRILNL----KDTSGR------SVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKS-GKVNDFSG 421 (653)
Q Consensus 362 ~g~~~~kr~i~l----~D~s~~------~i~vtLWg~~A~~~~~~l~~~~~~~~~~Vvaik~-~rV~~f~G 421 (653)
+|+.+.+-.|-. .|..|. -+.|++||+.|+.. +. + ..+..|.+.| .+...|.+
T Consensus 149 ~G~~v~~f~lAv~~~~~d~~Ge~~~~t~~i~vvawg~~Ae~~----~~-l--~KG~~V~V~GrL~~~~y~d 212 (301)
T 1se8_A 149 AGDAVLSLSIAVNENYQDRQGQRQEKVHYIDATLWRDLAENM----KE-L--RKGDPVMIMGRLVNEGWTD 212 (301)
T ss_dssp TCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHHHH----TT-C--CTTCEEEEEEEEEEEECC-
T ss_pred CCCEEEEEEEEEcCceEcCCCCcccccEEEEEEECCHHHHHH----Hh-c--CCCCEEEEEEEEeeeeEEC
Confidence 676543333322 233332 59999999998774 22 2 3567776664 46666753
No 33
>3mxn_A RECQ-mediated genome instability protein 1; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_A 3nbh_A
Probab=94.29 E-value=0.056 Score=49.53 Aligned_cols=89 Identities=20% Similarity=0.231 Sum_probs=60.6
Q ss_pred EEEEEEEEeCCCeEEEEEechhhhhhhCCCHHHHHHHhhccCChhH---HHHHHHH----hcCceEEEEEEEeeeccCce
Q 006263 549 YLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVR---FGEIIRS----RVFNQYLFRLKIKEELYGDE 621 (653)
Q Consensus 549 Y~l~~~i~D~Tg~~~~~~F~~~ae~llG~sA~el~~~~~e~~d~~~---~~~~~~~----~~~k~~~f~v~~k~~~y~~e 621 (653)
|.|.+.|+|+|+.+.+.+=+++-+.++|.|+.|+..++ .|+.. +.+.+.+ +.--.-.++|......
T Consensus 60 W~l~a~IsDGS~~LdV~f~~~VLt~lIGfS~~E~~~lk---kdp~~~~~l~e~L~~~Q~~L~dl~clM~I~~~~~~---- 132 (157)
T 3mxn_A 60 WSITAKVSDGTAYLDVDFVDEILTSLIGFSVPEMKQSK---KDPLQYQKFLEGLQKCQRDLIDLCCLMTISFNPSL---- 132 (157)
T ss_dssp CBCEEEEECSSCEEEEEECHHHHHHHHSCCHHHHHHHT---TSHHHHHHHHHHHHHHHHHHHHCEEEEEEEEETTT----
T ss_pred EEEEEEEeCCceeEEEEeeHHHHHhhhCCCHHHHHHHh---hCHHHHHHHHHHHHHHHHHHHhhccEEEEEEcCCC----
Confidence 56889999999999999999999999999999999988 34433 3333433 3333445666443221
Q ss_pred eeEEEEEEEeecCChHHHHHHHHHHH
Q 006263 622 QRVKITVIRADQVNYSSESRYLLDLI 647 (653)
Q Consensus 622 ~r~~~~v~~~~~vd~~~e~~~ll~~i 647 (653)
-+-.|.++++++- +....|-+.|
T Consensus 133 --~~pVV~~l~d~s~-~~l~~L~kRl 155 (157)
T 3mxn_A 133 --SKAMVLALQDVNM-EHLENLKKRL 155 (157)
T ss_dssp --TEEEEEEEECCCH-HHHHHHHHHT
T ss_pred --CCCEEEEecCCCH-HHHHHHHHHh
Confidence 1557778887775 3444554444
No 34
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=93.86 E-value=1.4 Score=44.23 Aligned_cols=178 Identities=14% Similarity=0.184 Sum_probs=96.8
Q ss_pred CCceEEEEEEEeeccccccccCCCCceeEEEEEE------eCCCC------eEEEEEchhHHHHHHhhcccCcEEEEece
Q 006263 218 QGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL------DSDGG------EIRVTCFNAVVDRFYEIIEVGRVYLISKG 285 (653)
Q Consensus 218 ~~~w~I~~RV~~k~~ir~~~~~~g~gk~f~~~L~------D~~g~------~I~at~f~~~~~kf~~~l~eG~vy~is~~ 285 (653)
+++.+|.|||.+--.+|...+ | ..+.+|.|. |++|. -|++++|+..++.....|+.|+-++|.+.
T Consensus 5 ~N~v~L~G~l~~dpelr~t~~--G-~~v~~f~lA~~~~~~~~~G~~~~~t~~~~v~~~g~~Ae~~~~~l~KG~~V~V~G~ 81 (264)
T 2fxq_A 5 LNQVFLIGTLTARPDMRYTPG--G-LAILDLNLAGQDAFTDESGQEREVPWYHRVRLLGRQAEMWGDLLEKGQLIFVEGR 81 (264)
T ss_dssp EEEEEEEEEESSCCCCEECTT--C-CEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHHHHTTTCCTTCEEEEEEE
T ss_pred eeEEEEEEEeccCCeEEECCC--C-CEEEEEEEEECCcEECCCCCEecccEEEEEEEEchHHHHHHHhCCCCCEEEEEEE
Confidence 468999999999999987643 2 256666653 43442 48999999999999999999999999964
Q ss_pred EEecCCCccc-CC--CCceEEEeccccEEEeccCCCC-CCCcccceecchhhhhhcc-cCccccEEEEEEEecCceeEEe
Q 006263 286 SLKPAQKNFN-HL--KNEWEIFLEATSTVDLCTEEDD-SIPKQQFSFRHISEIESAE-NNSIVDVIGIVISVNPSVPILR 360 (653)
Q Consensus 286 ~V~~a~~~f~-~~--~~~yei~f~~~T~I~~~~d~~~-~iP~~~f~f~~i~~i~~~~-~~~~vDVIGvV~~v~~~~~i~~ 360 (653)
. +. ..|. .. ...++|..+ .|..+..... ...... .. ..+. .-..|-++|.|..--++. .+
T Consensus 82 L-~~--~~~~~dG~~r~~~ev~a~---~i~~l~~~~~~~~~d~~------g~-~~m~~~~N~v~l~G~l~~dpe~r--~t 146 (264)
T 2fxq_A 82 L-EY--RQWEKDGEKKSEVQVRAE---FIDPLEGRGRETLEDAR------GQ-PRLRRALNQVILMGNLTRDPDLR--YT 146 (264)
T ss_dssp E-EE--C---------CCEEEEEE---EEEECCCC---------------------CCCCEEEEEEEEESSCCCCE--EC
T ss_pred E-Ee--eeEEeCCEEEEEEEEEEE---EEEECcCCccccccccc------cc-cccccceEEEEEEEEECCCCEEE--EC
Confidence 3 22 1222 11 122344433 2443311000 000000 00 0000 123466888877543333 23
Q ss_pred cCCceeeEEEEEEEeC-------CCCEEEEEEccchhhhhhhhHHHhhccCCCcEEEEEe-eEeecCC
Q 006263 361 KNGMETQRRILNLKDT-------SGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKS-GKVNDFS 420 (653)
Q Consensus 361 k~g~~~~kr~i~l~D~-------s~~~i~vtLWg~~A~~~~~~l~~~~~~~~~~Vvaik~-~rV~~f~ 420 (653)
.+|+.+.+-.|-.-.. .-.-+.|++||+.|.... + + ..|..|.+.| .+...|.
T Consensus 147 ~~G~~v~~f~lAv~~~~~g~~~~~t~~~~v~~wg~~Ae~~~-~----l--~KG~~V~V~G~l~~~~~~ 207 (264)
T 2fxq_A 147 PQGTAVVRLGLAVNERRRGQEEERTHFLEVQAWRELAEWAS-E----L--RKGDGLLVIGRLVNDSWT 207 (264)
T ss_dssp TTCCEEEEEEEEEECCC-------EEEEEEEEEHHHHHHHT-T----C--CTTCEEEEEEEEEEEEEE
T ss_pred CCCCEEEEEEEEEcCCcCCCCccccEEEEEEEEChHHHHhh-h----c--CCCCEEEEEEEEEeeEEE
Confidence 4566543322222211 112699999999987642 2 2 3566666654 4566664
No 35
>3ebe_A Protein MCM10 homolog; OB-fold, zinc finger, CCCH, DNA replication, metal-binding, zinc-finger, replication; 2.30A {Xenopus laevis} PDB: 3h15_A
Probab=93.27 E-value=0.56 Score=45.07 Aligned_cols=83 Identities=22% Similarity=0.266 Sum_probs=57.5
Q ss_pred CCCcceeccccC-----CC--CCceEEEEEEEeeccccccccCCCCceeEE-EEEEeC--CCCeEEEEEchhHHHHHHhh
Q 006263 204 APARIIPIAALN-----PY--QGRWAIKARVTAKGDLRRYNNARGDGKVFS-FDLLDS--DGGEIRVTCFNAVVDRFYEI 273 (653)
Q Consensus 204 ~~~~~~pI~~L~-----p~--~~~w~I~~RV~~k~~ir~~~~~~g~gk~f~-~~L~D~--~g~~I~at~f~~~~~kf~~~ 273 (653)
..+++..|++|- |. ..+|.+-|-|+.|++.|.-.+ |+-|. +.|.|= ...++...+|+++.++++ .
T Consensus 34 ~~~k~~~l~~L~~~v~~~~~~e~dwv~~GVV~~Ks~pk~~~~----gk~y~~w~l~DL~~~~~~V~lfLFg~a~~~~~-k 108 (200)
T 3ebe_A 34 NGRKLIRLAQLQNKIATEKLEEEDWVTFGVIVKKITPQSSNN----GKTFSIWRLNDLKDLDKYISLFLFGDVHKEHW-K 108 (200)
T ss_dssp TTCEECCGGGHHHHHHTTCSTTSCEEEEEEEEEEECC-----------CCEEEEEECSSSTTCCEEEEECHHHHHHHT-T
T ss_pred cCCeEEeHHHHHhhccCCCCCcCCEEEEEEEEecCCccCcCC----CCeEEEEEEEecCCCCcEEEEEEechHHHHhc-C
Confidence 456778888772 21 258999999999999987432 44332 334442 336799999999999966 5
Q ss_pred cccCcEEEEeceEEecCC
Q 006263 274 IEVGRVYLISKGSLKPAQ 291 (653)
Q Consensus 274 l~eG~vy~is~~~V~~a~ 291 (653)
+++|.|+-|-|..+.+.+
T Consensus 109 ~~~G~ViaiLNP~i~~~~ 126 (200)
T 3ebe_A 109 TDQGTVIGLLNANPMKPK 126 (200)
T ss_dssp CCTTEEEEEESCEECCCC
T ss_pred cCCceEEEEECCEEccCC
Confidence 899999999999876543
No 36
>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A*
Probab=92.00 E-value=0.7 Score=41.91 Aligned_cols=111 Identities=11% Similarity=-0.016 Sum_probs=62.0
Q ss_pred hhhhhhcccCccccEEEEEEEecCc-eeEEec--CCceee-EEEEEE-EeC-------CCCEEEEEEccchhhhhhhhHH
Q 006263 331 ISEIESAENNSIVDVIGIVISVNPS-VPILRK--NGMETQ-RRILNL-KDT-------SGRSVELTLWGDFCNKEGQKLQ 398 (653)
Q Consensus 331 i~~i~~~~~~~~vDVIGvV~~v~~~-~~i~~k--~g~~~~-kr~i~l-~D~-------s~~~i~vtLWg~~A~~~~~~l~ 398 (653)
|+-|.++..+.++|++|.|+.+-.- ..++-. +..+-. -..... .|. ...++.||||+..|.- +
T Consensus 5 f~llkdv~~~~F~Dl~~qVv~~~~~~~~~~LyVTDYT~N~~~~~~~~~~~~~~W~Gp~G~~tlqVtlwd~ha~~-----a 79 (143)
T 4hik_A 5 FSLLSQITPHQRCSFYAQVIKTWYSDKNFTLYVTDYTENELFFPMSPYTSSSRWRGPFGRFSIRCILWDEHDFY-----C 79 (143)
T ss_dssp CCCGGGCCSSCEEEEEEEEEEEEECSSCEEEEEECSCCCTTSCCBCTTCTTCSCCCCCBSCCEEEEECHHHHHH-----H
T ss_pred hhhHHhCCCCCeEEEEEEEEEEEcCCCeEEEEEecCCCCCcccccccCCCCccccCCCCcEEEEEEEECcHHHH-----H
Confidence 4445566689999999999886532 122211 111100 000000 011 2248999999999865 2
Q ss_pred HhhccCCCcEEEEEeeEeecC-CCc---eecccc----ce-EEEEcCChHHHHHHHHH
Q 006263 399 EMVDVGFFPVLSVKSGKVNDF-SGK---SIGTIP----ST-QLFINPDFAEAHELREW 447 (653)
Q Consensus 399 ~~~~~~~~~Vvaik~~rV~~f-~G~---sLs~~~----~S-~i~inPdipe~~~l~~w 447 (653)
.. +...|..|.|++++++.- +|. .|.... .. ...++|+.|+.++|...
T Consensus 80 r~-~lk~Gd~v~L~Nv~iK~~~~g~LEG~l~~dr~~~~ki~v~~ld~~~~~lk~ll~R 136 (143)
T 4hik_A 80 RN-YIKEGDYVVMKNVRTKIDHLGYLECILHGDSAKRYNMSIEKVDSEEPELNEIKSR 136 (143)
T ss_dssp TT-TCCTTCEEEEEEEEEEECTTSCEEEEECCCTTCCSCCEEEEECTTCGGGHHHHHH
T ss_pred Hh-hCCCCCEEEEEeEEEeecCCceEEEEEcCCCCCCCcceEEEcCCCCHHHHHHHHH
Confidence 21 135689999999999743 452 232111 11 23467766888777654
No 37
>3u4z_A Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.30A {Tetrahymena thermophila}
Probab=91.90 E-value=4 Score=32.52 Aligned_cols=84 Identities=12% Similarity=0.170 Sum_probs=63.6
Q ss_pred CCCCCceEEEEEEEeeccccccccCCCCceeEEEEEEeCCC-CeEEEEEchhHHHHHHhhcccCcEEEEeceEEecCCCc
Q 006263 215 NPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDG-GEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKN 293 (653)
Q Consensus 215 ~p~~~~w~I~~RV~~k~~ir~~~~~~g~gk~f~~~L~D~~g-~~I~at~f~~~~~kf~~~l~eG~vy~is~~~V~~a~~~ 293 (653)
.......++.|.|+.... ..+-+.+-++|... -+.++.+|.++|-.|.+.+..++||++..|--...|
T Consensus 9 ktskqylsvlaqvvdiqs---------sdknirlkicdnscnqelkvvifpdlcyewrdkfsinkwyyfnefvrqiyn-- 77 (109)
T 3u4z_A 9 KTSKQYLSVLAQVVDIQS---------SDKNIRLKICDNSCNQELKVVIFPDLCYEWRDKFSINKWYYFNEFVRQIYN-- 77 (109)
T ss_dssp TCCCSEEEEEEEEEEEEC---------CSSCEEEEEECSSCSSCEEEEECTTHHHHHTTTCCTTCEEEEEEEEEEESS--
T ss_pred HHHHHHHHHHHHHhhhhc---------CCCceEEEeecccccceeEEEEchhHHHHHHhhcchhhhhhHHHHHHHHhh--
Confidence 334456778888876421 13567889999653 589999999999999999999999999998544333
Q ss_pred ccCCCCceEEEeccccEEEec
Q 006263 294 FNHLKNEWEIFLEATSTVDLC 314 (653)
Q Consensus 294 f~~~~~~yei~f~~~T~I~~~ 314 (653)
.+..+.-+-++.|.+.
T Consensus 78 -----devqlknnihssikes 93 (109)
T 3u4z_A 78 -----DEVQLKNNIHSSIKES 93 (109)
T ss_dssp -----SCEEEECCTTCEEEEC
T ss_pred -----hHHhHhhhhhhhhhcc
Confidence 2466666778999987
No 38
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=91.52 E-value=0.47 Score=42.40 Aligned_cols=70 Identities=17% Similarity=0.318 Sum_probs=45.3
Q ss_pred ccccEEEEEEEecCceeEEecCCceeeEEEEEEEeCCCCEEEEEEccchhhhhhhhHHHhhccCCCcEEEEEeeEeecCC
Q 006263 341 SIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFS 420 (653)
Q Consensus 341 ~~vDVIGvV~~v~~~~~i~~k~g~~~~kr~i~l~D~s~~~i~vtLWg~~A~~~~~~l~~~~~~~~~~Vvaik~~rV~~f~ 420 (653)
..|.++|+|.++.+- .....++|.|.||..|++.+|.+...... . ...+ ..+..|-+.|. ++.|+
T Consensus 32 ~~V~iVG~V~~~~~~----------~~~~~~~ldD~TG~~I~~~~W~~~~~~~~-~-~~~~--~~g~yVrV~G~-l~~f~ 96 (132)
T 3kdf_D 32 SQVTIVGIIRHAEKA----------PTNIVYKIDDMTAAPMDVRQWVDTDDTSS-E-NTVV--PPETYVKVAGH-LRSFQ 96 (132)
T ss_dssp CEEEEEEEEEEEEEC----------SSEEEEEEECSSSSCEEEEEEC-----------CCC--CTTCEEEEEEE-EEEET
T ss_pred EEEEEEEEEEEEEEc----------CCeEEEEEECCCCCEEEEEEEccCCCccc-c-cccc--cCCCEEEEEEE-EEeEC
Confidence 468999999988542 14678999999998899999987642210 0 1112 35677776655 78899
Q ss_pred Cc-eec
Q 006263 421 GK-SIG 425 (653)
Q Consensus 421 G~-sLs 425 (653)
|+ .|.
T Consensus 97 g~~qi~ 102 (132)
T 3kdf_D 97 NKKSLV 102 (132)
T ss_dssp TEEEEE
T ss_pred CEEEEE
Confidence 95 554
No 39
>3ebe_A Protein MCM10 homolog; OB-fold, zinc finger, CCCH, DNA replication, metal-binding, zinc-finger, replication; 2.30A {Xenopus laevis} PDB: 3h15_A
Probab=91.10 E-value=0.71 Score=44.33 Aligned_cols=81 Identities=15% Similarity=0.269 Sum_probs=54.1
Q ss_pred ceecchhhhhh-cccCccc--c--EEEEEEEecCceeEEecCCceeeEEEEEEEeCCC--CEEEEEEccchhhhhhhhHH
Q 006263 326 FSFRHISEIES-AENNSIV--D--VIGIVISVNPSVPILRKNGMETQRRILNLKDTSG--RSVELTLWGDFCNKEGQKLQ 398 (653)
Q Consensus 326 f~f~~i~~i~~-~~~~~~v--D--VIGvV~~v~~~~~i~~k~g~~~~kr~i~l~D~s~--~~i~vtLWg~~A~~~~~~l~ 398 (653)
..|++|++|.. +..+.+. | ++|+|.+-++... +++|+... -..|.|..+ .+|.|-|+|+-..+
T Consensus 36 ~k~~~l~~L~~~v~~~~~~e~dwv~~GVV~~Ks~pk~--~~~gk~y~--~w~l~DL~~~~~~V~lfLFg~a~~~------ 105 (200)
T 3ebe_A 36 RKLIRLAQLQNKIATEKLEEEDWVTFGVIVKKITPQS--SNNGKTFS--IWRLNDLKDLDKYISLFLFGDVHKE------ 105 (200)
T ss_dssp CEECCGGGHHHHHHTTCSTTSCEEEEEEEEEEECC---------CCE--EEEEECSSSTTCCEEEEECHHHHHH------
T ss_pred CeEEeHHHHHhhccCCCCCcCCEEEEEEEEecCCccC--cCCCCeEE--EEEEEecCCCCcEEEEEEechHHHH------
Confidence 58999999976 3332222 3 6699999988754 34566543 467777665 67999999998644
Q ss_pred HhhccCCCcEEEEEeeEee
Q 006263 399 EMVDVGFFPVLSVKSGKVN 417 (653)
Q Consensus 399 ~~~~~~~~~Vvaik~~rV~ 417 (653)
.|....|.||||-+..+-
T Consensus 106 -~~k~~~G~ViaiLNP~i~ 123 (200)
T 3ebe_A 106 -HWKTDQGTVIGLLNANPM 123 (200)
T ss_dssp -HTTCCTTEEEEEESCEEC
T ss_pred -hcCcCCceEEEEECCEEc
Confidence 355578999999888774
No 40
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=90.25 E-value=0.54 Score=42.21 Aligned_cols=71 Identities=15% Similarity=0.318 Sum_probs=46.0
Q ss_pred ccccEEEEEEEecCceeEEecCCceeeEEEEEEEeCCCCEEEEEEccchhhhhhhhHHHhhccCCCcEEEEEeeEeecCC
Q 006263 341 SIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFS 420 (653)
Q Consensus 341 ~~vDVIGvV~~v~~~~~i~~k~g~~~~kr~i~l~D~s~~~i~vtLWg~~A~~~~~~l~~~~~~~~~~Vvaik~~rV~~f~ 420 (653)
..|.++|+|.++..-. ....++|.|.|| .|++.+|.+........ .+.+ ..+.+|-+.|. ++.|+
T Consensus 37 ~~V~iVG~V~~~~~~~----------~~~~~~ldD~TG-~I~~~~W~~~~~~~~~~-~~~~--~~g~yVrV~G~-v~~f~ 101 (136)
T 4gop_B 37 GQLTFVAVVRNISRNA----------TNVAYSVEDGTG-QIEVRQWLDSSSDDSSK-ASEI--RNNVYVRVLGT-LKSFQ 101 (136)
T ss_dssp CEEEEEEEEEEEEECS----------SEEEEEEECSSC-EEEEEEECC---------CCSC--CTTCEEEEEEE-EEEET
T ss_pred EEEEEEEEEEEEEecC----------CeEEEEEECCCC-CEEEEEecccCCccccc-cccc--CCCCEEEEEEE-EEEeC
Confidence 4689999999885421 367899999999 89999998754310000 1112 35777777665 78899
Q ss_pred Cc-eecc
Q 006263 421 GK-SIGT 426 (653)
Q Consensus 421 G~-sLs~ 426 (653)
|+ .|..
T Consensus 102 g~~qi~~ 108 (136)
T 4gop_B 102 NRRSISS 108 (136)
T ss_dssp TEEEEEE
T ss_pred CEEEEEE
Confidence 95 5543
No 41
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=89.27 E-value=1.9 Score=47.80 Aligned_cols=99 Identities=18% Similarity=0.141 Sum_probs=71.7
Q ss_pred CcceeccccCCCC--CceEEEEEEEeeccccccccCCCCceeEEEEEEeCCCCeEEEEEch-----hHHHHHHhhcccCc
Q 006263 206 ARIIPIAALNPYQ--GRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFN-----AVVDRFYEIIEVGR 278 (653)
Q Consensus 206 ~~~~pI~~L~p~~--~~w~I~~RV~~k~~ir~~~~~~g~gk~f~~~L~D~~g~~I~at~f~-----~~~~kf~~~l~eG~ 278 (653)
+..+.|.+|++.. ...+|+|||.++ |. .|++.-++|.| .++.||+++.. +..-+|...|..|+
T Consensus 48 ~~~~~i~~l~~~~~g~~V~v~Gwv~~~---R~------~gkl~Fi~LrD-~~g~iQ~v~~~~~~~~~~~~~~~~~l~~es 117 (548)
T 3i7f_A 48 LKYTEIEELVPAMAEKTVTIRARVQAV---RG------KGNMVFLFLRK-GIYTCQALVMKSETISKEFVQFCQKISAES 117 (548)
T ss_dssp CCBCCGGGCSGGGTTCEEEEEEEEEEE---EE------CSSEEEEEEEE-TTEEEEEEEECSSSSCHHHHHHHHTCCTTE
T ss_pred CceEEhhhcchhcCCCEEEEEEEEEEE---ec------CCCeEEEEEEE-CCeeEEEEEECCCccCHHHHHHHhCCCCCC
Confidence 4567888887432 468999999874 33 35777789999 67799999975 23445677899999
Q ss_pred EEEEeceEEecCCCcccCCCCceEEEeccccEEEec
Q 006263 279 VYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLC 314 (653)
Q Consensus 279 vy~is~~~V~~a~~~f~~~~~~yei~f~~~T~I~~~ 314 (653)
++.+.+.-++...+.-+.....+||...+-..+..+
T Consensus 118 ~V~V~G~v~~~~~~~~~~~~~~~El~~~~i~vls~a 153 (548)
T 3i7f_A 118 ICDITGIVKAVEKPIEKATQQDVEIHVTSIAVVSLA 153 (548)
T ss_dssp EEEEEEEEEECSSCCTTSSSCSEEEEEEEEEEEECC
T ss_pred EEEEEEEEEeCCcccccCCCCcEEEEEeEEEEEecC
Confidence 999997655543322123457899999887777766
No 42
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=88.66 E-value=0.98 Score=38.55 Aligned_cols=66 Identities=15% Similarity=0.059 Sum_probs=53.0
Q ss_pred CCceEEEEEEEeeccccccccCCCCceeEEEEEEe----CCCCe-------EEEEEchhHHHHHHhhcccCcEEEEeceE
Q 006263 218 QGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLD----SDGGE-------IRVTCFNAVVDRFYEIIEVGRVYLISKGS 286 (653)
Q Consensus 218 ~~~w~I~~RV~~k~~ir~~~~~~g~gk~f~~~L~D----~~g~~-------I~at~f~~~~~kf~~~l~eG~vy~is~~~ 286 (653)
+++..+.||+++--++|...+ | ..+.+|.|.= .+.+- |++++|+..++.....|..|+-+++.+..
T Consensus 2 ~N~v~L~G~l~~dpelR~t~~--G-~~v~~f~lA~~~~~~~~~~~r~~~~~~~vv~~g~~Ae~~~~~l~KG~~V~V~G~L 78 (104)
T 1txy_A 2 TNRLVLSGTVCRAPLRKVSPS--G-IPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSITVGSRITVQGFI 78 (104)
T ss_dssp CEEEEEEEEEEEEEEEEECTT--S-CEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSTTHHHHTTCCTTCEEEEEEEE
T ss_pred cEEEEEEEEECCCceEEECCC--C-CEEEEEEEEEeCccccCCceeceeEEEEEEEEhHHHHHHHhhCCCCCEEEEEEEE
Confidence 467899999999999997543 2 2567776642 24567 99999999999999999999999999754
No 43
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}
Probab=88.36 E-value=2.6 Score=35.79 Aligned_cols=65 Identities=14% Similarity=0.035 Sum_probs=49.4
Q ss_pred CCceEEEEEEEeeccccccccCCCCceeEEEEEE-----eCCCCe------EEEEEchhHHHHHHhhcccCcEEEEeceE
Q 006263 218 QGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL-----DSDGGE------IRVTCFNAVVDRFYEIIEVGRVYLISKGS 286 (653)
Q Consensus 218 ~~~w~I~~RV~~k~~ir~~~~~~g~gk~f~~~L~-----D~~g~~------I~at~f~~~~~kf~~~l~eG~vy~is~~~ 286 (653)
+|+..+.||+++--++|.-. .| -.+.+|.|. ++.|++ |.|++|+..++.... +..|+-+.|.++.
T Consensus 2 MN~v~L~GrLt~dPelRyTp--sG-~~V~~f~LA~~s~~~e~g~~r~~~f~i~vv~wGk~AE~~~~-~~kGs~V~VeGrL 77 (101)
T 3en2_A 2 INRLQLVATLVEREVMRYTP--AG-VPIVNCLLSYSGQAMEAQAARQVEFSIEALGAGKMASVLDR-IAPGTVLECVGFL 77 (101)
T ss_dssp CCCEEEEEEEEEECCCEECT--TC-CEEEEEEEEEEEEEECC--EEEEEEEEEEEEETHHHHHHTT-SCTTCEEEEEEEE
T ss_pred cCEEEEEEEECcCccEEECC--CC-CEEEEEEEEEcceEecCCCcEeeeEEEEEEEEhHHHHHHhh-cCCCCEEEEEEEE
Confidence 57899999999999999643 23 256777664 234432 999999999998875 7899999999875
No 44
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=86.89 E-value=6.1 Score=36.36 Aligned_cols=71 Identities=15% Similarity=0.222 Sum_probs=47.3
Q ss_pred ccccEEEEEEEecCceeEEecCCceeeEEEEEEEeCCCCEEEEEEccchhhhhhhhHHHhhccCCCcEEEEEeeEeecCC
Q 006263 341 SIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFS 420 (653)
Q Consensus 341 ~~vDVIGvV~~v~~~~~i~~k~g~~~~kr~i~l~D~s~~~i~vtLWg~~A~~~~~~l~~~~~~~~~~Vvaik~~rV~~f~ 420 (653)
..|+|+|+|+++.+- . .+..++|-|.||..|+|.+|=+...... .+. .....|.+|-++| +|+.|+
T Consensus 48 ~~V~IvGiVv~~~~~------~----~~~~ytIDD~TG~~I~cv~w~~~~~~~~-~~~--~~l~~G~~VrV~G-~v~~fr 113 (159)
T 3kf6_A 48 RWIQIVGYIAAIDIY------E----GKHVLTVDDCSGMVLRVVFIIQDDFSMS-KRA--ISMSPGNVVCVFG-KINSFR 113 (159)
T ss_dssp CEEEEEEEEEEEEEE------T----TEEEEEEECSSSCEEEEEEEGGGCHHHH-HHH--TTCCTTCEEEEEE-EEECSS
T ss_pred EEEEEEEEEEEEEEe------C----CEEEEEEecCCCCeEEEEEEccCCCCcc-ccc--ccCCCCCEEEEEE-EEEeeC
Confidence 368999999997632 1 3567888888998999999987622110 011 1124578887775 467788
Q ss_pred C-ceec
Q 006263 421 G-KSIG 425 (653)
Q Consensus 421 G-~sLs 425 (653)
| +.|.
T Consensus 114 ~~rqI~ 119 (159)
T 3kf6_A 114 SEVELI 119 (159)
T ss_dssp SSCEEE
T ss_pred CEEEEE
Confidence 8 4554
No 45
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=86.70 E-value=2.7 Score=46.02 Aligned_cols=97 Identities=13% Similarity=0.106 Sum_probs=66.3
Q ss_pred ceeccccCCC---CCceEEEEEEEeeccccccccCCCCcee-EEEEEEeCCCCeEEEEEchh-------HHHHHHhhccc
Q 006263 208 IIPIAALNPY---QGRWAIKARVTAKGDLRRYNNARGDGKV-FSFDLLDSDGGEIRVTCFNA-------VVDRFYEIIEV 276 (653)
Q Consensus 208 ~~pI~~L~p~---~~~w~I~~RV~~k~~ir~~~~~~g~gk~-f~~~L~D~~g~~I~at~f~~-------~~~kf~~~l~e 276 (653)
.+.|.+|... ....+|+|||.++ |. .|++ .-++|.| .+|.||+++-.+ ..-++...|..
T Consensus 23 ~~~~~~l~~~~~~g~~V~v~GwV~~~---R~------~g~~l~Fi~LrD-~~g~iQvv~~~~~~~~~~~~~~~~~~~l~~ 92 (487)
T 1eov_A 23 RVKFVDLDEAKDSDKEVLFRARVHNT---RQ------QGATLAFLTLRQ-QASLIQGLVKANKEGTISKNMVKWAGSLNL 92 (487)
T ss_dssp CCCGGGCCTTTTTTCEEEEEEEEEEE---EE------CSSSEEEEEEEE-TTEEEEEEEECCSSSSSCHHHHHHHTTCCT
T ss_pred eeEHHHhcccccCCCEEEEEEEEEEe---ec------cCCccEEEEEEE-CCccEEEEEeccccccccHHHHHHHhcCCC
Confidence 4457777643 3468999999875 33 2565 6688999 678999998532 23345567999
Q ss_pred CcEEEEeceEEecCCCcccCCCCceEEEeccccEEEec
Q 006263 277 GRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLC 314 (653)
Q Consensus 277 G~vy~is~~~V~~a~~~f~~~~~~yei~f~~~T~I~~~ 314 (653)
|+++.+.+.-++...+.-+.....+||...+-..+..|
T Consensus 93 e~~V~V~G~v~~~~~~~~~~~~g~~El~~~~i~vl~~a 130 (487)
T 1eov_A 93 ESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISET 130 (487)
T ss_dssp TCEEEEEEEEEECSSCCTTSSEEEEEEEEEEEEEEECC
T ss_pred CCEEEEEEEEEeCCCCCcCCCCCcEEEEEEEEEEeecc
Confidence 99999998765554322122335799999877777766
No 46
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=86.32 E-value=2.9 Score=40.04 Aligned_cols=65 Identities=11% Similarity=0.185 Sum_probs=50.8
Q ss_pred CCceEEEEEEEeeccccccccCCCCceeEEEEEEe------C--------CCCeEEEEEchhHHHHHHhhcccCcEEEEe
Q 006263 218 QGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLD------S--------DGGEIRVTCFNAVVDRFYEIIEVGRVYLIS 283 (653)
Q Consensus 218 ~~~w~I~~RV~~k~~ir~~~~~~g~gk~f~~~L~D------~--------~g~~I~at~f~~~~~kf~~~l~eG~vy~is 283 (653)
.++.+|.+||++.-++|...+ | ..+.+|.|+= . +..-|++++|+.+++.+...|+.|+.++|.
T Consensus 4 ~N~V~LiGrL~~DPElR~T~~--G-~~Va~FsLAvn~R~~d~~~Ge~~d~~T~wi~VvawgklAE~v~~~L~KG~~V~Ve 80 (199)
T 3eiv_A 4 ETVITVVGNLVDDPELRFTPS--G-AAVAKFRVASTPRTFDRQTNEWKDGESLFLTCSVWRQAAENVAESLQRGMRVIVQ 80 (199)
T ss_dssp CCEEEEEEEESSCCEEEECTT--C-CEEEEEEEEECC-----------CCCCEEEEEEEETHHHHHHHHHCCTTCEEEEE
T ss_pred ccEEEEEEEECCCCeEEECCC--C-CEEEEEEEEEcCcccccCCCcEecCccEEEEEEEEhHHHHHHHHhcCCCCEEEEE
Confidence 467899999999999997643 2 2566766642 1 234599999999999999999999999998
Q ss_pred ce
Q 006263 284 KG 285 (653)
Q Consensus 284 ~~ 285 (653)
.-
T Consensus 81 Gr 82 (199)
T 3eiv_A 81 GR 82 (199)
T ss_dssp EE
T ss_pred EE
Confidence 63
No 47
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=86.06 E-value=2 Score=38.34 Aligned_cols=77 Identities=14% Similarity=0.159 Sum_probs=50.6
Q ss_pred EEEEEEeCCCeEEEEEechhhhhhhCCCHHHHHHHhhccCChhHHHHHHHHhcCceEEEEEEEeeeccCceeeEEEEEEE
Q 006263 551 LQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIR 630 (653)
Q Consensus 551 l~~~i~D~Tg~~~~~~F~~~ae~llG~sA~el~~~~~e~~d~~~~~~~~~~~~~k~~~f~v~~k~~~y~~e~r~~~~v~~ 630 (653)
+.+.+.|.||.+.+..|++..+. ++ .+...+ ..|. .++|..+...|++. ....+.+
T Consensus 55 ~~~~ldD~TG~I~~~~W~~~~~~----~~----------~~~~~~------~~g~--yVrV~G~v~~f~g~--~qi~~~~ 110 (136)
T 4gop_B 55 VAYSVEDGTGQIEVRQWLDSSSD----DS----------SKASEI------RNNV--YVRVLGTLKSFQNR--RSISSGH 110 (136)
T ss_dssp EEEEEECSSCEEEEEEECC----------------------CCSC------CTTC--EEEEEEEEEEETTE--EEEEESE
T ss_pred EEEEEECCCCCEEEEEecccCCc----cc----------cccccc------CCCC--EEEEEEEEEEeCCE--EEEEEEE
Confidence 67888999999999999865321 00 000000 0122 66777777889974 4566777
Q ss_pred eecC-ChHHHHHHHHHHHHhhh
Q 006263 631 ADQV-NYSSESRYLLDLISKSF 651 (653)
Q Consensus 631 ~~~v-d~~~e~~~ll~~i~~~~ 651 (653)
+.|+ |+.+..-.+|+.|...+
T Consensus 111 ir~v~d~Nei~~H~Le~i~~hl 132 (136)
T 4gop_B 111 MRPVIDYNEVMFHRLEAVHAHL 132 (136)
T ss_dssp EEECSSHHHHHHHHHHHHHHHH
T ss_pred EEECCCccHHHHHHHHHHHHHH
Confidence 7777 69999999999987543
No 48
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=85.78 E-value=5.3 Score=34.71 Aligned_cols=67 Identities=15% Similarity=0.143 Sum_probs=50.7
Q ss_pred CCceEEEEEEEeeccccccccCCCCceeEEEEEEe-----CCCCe------EEEEEchhHHHHHHhhcccCcEEEEeceE
Q 006263 218 QGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLD-----SDGGE------IRVTCFNAVVDRFYEIIEVGRVYLISKGS 286 (653)
Q Consensus 218 ~~~w~I~~RV~~k~~ir~~~~~~g~gk~f~~~L~D-----~~g~~------I~at~f~~~~~kf~~~l~eG~vy~is~~~ 286 (653)
+|+..+.||+++--++|... .| -.+.+|.|.- +.|.+ |.|++|+..++.. ..|..|+-+.|.++.
T Consensus 1 MNkviL~GrL~~dPelRyTp--sG-~~V~~f~LA~~~~~~~~g~~r~~~~~i~vv~~Gk~AE~~-~~l~kGs~V~VeGrL 76 (115)
T 3fhw_A 1 MNTLELSARVLECGAMRHTP--AG-LPALELLLVHESEVVEAGHPRRVELTISAVALGDLALLL-ADTPLGTEMQVQGFL 76 (115)
T ss_dssp CEEEEEEEEEEEECCCEECT--TS-CEEEEEEEEEEEECCCCC--CEEEEEEEEEEETHHHHHH-TTCCTTCEEEEEEEE
T ss_pred CCEEEEEEEECcCcceEECC--CC-CEEEEEEEEEcceeecCCCeeeeeEEEEEEEEhHHHHhh-hccCCCCEEEEEEEE
Confidence 46789999999999999543 23 2577777652 23322 9999999999987 889999999999875
Q ss_pred Ee
Q 006263 287 LK 288 (653)
Q Consensus 287 V~ 288 (653)
-.
T Consensus 77 ~t 78 (115)
T 3fhw_A 77 AP 78 (115)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 49
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=85.10 E-value=2.6 Score=37.68 Aligned_cols=65 Identities=18% Similarity=0.243 Sum_probs=50.7
Q ss_pred CCceEEEEEEEeeccccccccCCCCceeEEEEEE------eCCCC------eEEEEEchhHHHHHHhhcccCcEEEEece
Q 006263 218 QGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL------DSDGG------EIRVTCFNAVVDRFYEIIEVGRVYLISKG 285 (653)
Q Consensus 218 ~~~w~I~~RV~~k~~ir~~~~~~g~gk~f~~~L~------D~~g~------~I~at~f~~~~~kf~~~l~eG~vy~is~~ 285 (653)
+++.+|.|||++--.+|...+ | ..+.+|.|+ |++|. -|.+++|+..++.....|+.|+.+.|.+.
T Consensus 2 mN~V~L~GrL~~dPelr~t~~--G-~~v~~f~lA~~~~~~~~~G~~~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~ 78 (134)
T 2vw9_A 2 FNKVIMVGRLTRNVELKYLPS--G-SAAATIGLATSRRFKKQDGTLGEEVCFIDARLFGRTAEIANQYLSKGSSVLIEGR 78 (134)
T ss_dssp CCCEEEEEEESSCCEEEECTT--S-CEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEE
T ss_pred eeEEEEEEEECCCCEEEECCC--C-CEEEEEEEEEeCCeECCCCCCccccEEEEEEEEcHHHHHHHHhCCCCCEEEEEEE
Confidence 467899999999988887543 2 256666653 33332 49999999999999999999999999974
No 50
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=85.07 E-value=1.6 Score=44.02 Aligned_cols=70 Identities=16% Similarity=0.319 Sum_probs=46.3
Q ss_pred cccEEEEEEEecCceeEEecCCceeeEEEEEEEeCCCCEEEEEEccchhhhhhhhHHHhhccCCCcEEEEEeeEeecCCC
Q 006263 342 IVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSG 421 (653)
Q Consensus 342 ~vDVIGvV~~v~~~~~i~~k~g~~~~kr~i~l~D~s~~~i~vtLWg~~A~~~~~~l~~~~~~~~~~Vvaik~~rV~~f~G 421 (653)
.|+++|+|+++..- .....++|.|.||..|++.+|.+....- .. .+.| ..+.+|-+.| +|+.|+|
T Consensus 73 ~V~ivG~V~~i~~~----------~~~~~~~L~D~TG~~I~~k~W~~~~~~~-~~-~~~~--~~G~yVrV~G-~v~~f~g 137 (270)
T 2pi2_A 73 QVTIVGIIRHAEKA----------PTNIVYKIDDMTAAPMDVRQWVDTDDTS-SE-NTVV--PPETYVKVAG-HLRSFQN 137 (270)
T ss_dssp EEEEEEEEEEEEEC----------SSEEEEEEECSSSSCEEEEEECC---------CCCC--CTTCEEEEEE-EEEEETT
T ss_pred EEEEEEEEEEEEec----------cceEEEEEECCCCCEEEEEEEcCcCccc-ch-hhcC--CCCCEEEEEE-EEEecCC
Confidence 58899999887432 1467899999999779999998753210 00 0112 3578887775 7888999
Q ss_pred c-eecc
Q 006263 422 K-SIGT 426 (653)
Q Consensus 422 ~-sLs~ 426 (653)
+ .|..
T Consensus 138 ~~qi~i 143 (270)
T 2pi2_A 138 KKSLVA 143 (270)
T ss_dssp EEEEEE
T ss_pred eeEEEE
Confidence 5 5543
No 51
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=84.13 E-value=2.2 Score=37.56 Aligned_cols=65 Identities=23% Similarity=0.393 Sum_probs=50.5
Q ss_pred CCceEEEEEEEeeccccccccCCCCceeEEEEEE------eCCCC-------eEEEEEch-hHHHHHHhhcccCcEEEEe
Q 006263 218 QGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL------DSDGG-------EIRVTCFN-AVVDRFYEIIEVGRVYLIS 283 (653)
Q Consensus 218 ~~~w~I~~RV~~k~~ir~~~~~~g~gk~f~~~L~------D~~g~-------~I~at~f~-~~~~kf~~~l~eG~vy~is 283 (653)
+++.+|.||+.+--.+|...+ | ..+.+|.|+ |.++| -|++++|+ ..++.....|+.|+-++|.
T Consensus 6 ~N~v~l~Grl~~dpelr~t~~--G-~~v~~f~lA~~~~~~~~~~G~~~~~t~~~~v~~wg~~~Ae~~~~~l~KG~~V~V~ 82 (124)
T 3ulp_A 6 LNKIMLIGRVGCEPDIKILNG--G-DKVATFSLATNEFWRDRNTNELKSKTDWHRIVVYDQNIVDLIDKYLRKGRRVYVQ 82 (124)
T ss_dssp EEEEEEEEEECSCCEEEECTT--S-CEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEECCHHHHHHHHHHCCTTCEEEEE
T ss_pred ceEEEEEEEECCCcEEEECCC--C-CEEEEEEEEEccceecccCCcEecccEEEEEEEEEchHHHHHHhhcCCCCEEEEE
Confidence 468999999999988887643 2 256666663 33323 39999999 7999999999999999998
Q ss_pred ce
Q 006263 284 KG 285 (653)
Q Consensus 284 ~~ 285 (653)
+-
T Consensus 83 G~ 84 (124)
T 3ulp_A 83 GS 84 (124)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 52
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=83.64 E-value=2 Score=39.63 Aligned_cols=66 Identities=20% Similarity=0.240 Sum_probs=51.2
Q ss_pred CCCceEEEEEEEeeccccccccCCCCceeEEEEEE------eC-CC------CeEEEEEchhHHHHHHhhcccCcEEEEe
Q 006263 217 YQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL------DS-DG------GEIRVTCFNAVVDRFYEIIEVGRVYLIS 283 (653)
Q Consensus 217 ~~~~w~I~~RV~~k~~ir~~~~~~g~gk~f~~~L~------D~-~g------~~I~at~f~~~~~kf~~~l~eG~vy~is 283 (653)
.+++.+|.+||++.-.+|...+ | ..+.+|.|. |+ .| .-|++++|+..++.+...|+.|+.++|.
T Consensus 7 ~mN~V~LiGrL~~dPelr~t~~--G-~~v~~f~lA~~~~~~d~~~Ge~~e~t~~i~vv~wg~~Ae~~~~~l~KG~~V~Ve 83 (158)
T 3tqy_A 7 GVNKVILIGNLGQDPEVRYTPN--G-NAVANVTLATSTTWRDKQTGELQERTEWHRIAFFNRLAEIVGEYLRKGSKIYIE 83 (158)
T ss_dssp CEEEEEEEEEESSSCEEEECTT--C-CEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEEETHHHHHHHHHCCTTCEEEEE
T ss_pred ccCEEEEEEEECCCCEEEECCC--C-CEEEEEEEEEcCceeccCCCCEeeeeEEEEEEEEhHHHHHHHhhcCCCCEEEEE
Confidence 3578999999999999987643 2 256666553 43 22 3479999999999999999999999998
Q ss_pred ce
Q 006263 284 KG 285 (653)
Q Consensus 284 ~~ 285 (653)
+.
T Consensus 84 G~ 85 (158)
T 3tqy_A 84 GS 85 (158)
T ss_dssp EE
T ss_pred EE
Confidence 85
No 53
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=83.50 E-value=7.3 Score=33.06 Aligned_cols=63 Identities=13% Similarity=0.084 Sum_probs=49.0
Q ss_pred CceEEEEEEEeeccccccccCCCCceeEEEEEE-----eCCCC-----e-EEEEEchhHHHHHHhhcccCcEEEEeceE
Q 006263 219 GRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL-----DSDGG-----E-IRVTCFNAVVDRFYEIIEVGRVYLISKGS 286 (653)
Q Consensus 219 ~~w~I~~RV~~k~~ir~~~~~~g~gk~f~~~L~-----D~~g~-----~-I~at~f~~~~~kf~~~l~eG~vy~is~~~ 286 (653)
|+..+.||+++--++|...+ | ..+.+|.|. ++.|. . |++++|+..++ ... |..|+-++|.++.
T Consensus 8 Nkv~LiG~L~~dPelRytp~--G-~~v~~f~lA~~~~~~~~g~~~~~~~~i~vv~~gk~Ae-~~~-l~KG~~v~veGrL 81 (103)
T 3k8a_A 8 NLVSLAALIEKAFPIRYTPA--G-IPVLDIILKHESWQEENGQQCLVQLEIPARILGRQAE-EWQ-YRQGDCATVEGFL 81 (103)
T ss_dssp EEEEEEEEEEEECCCEECTT--S-CEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEHHHHH-HST-TCTTCEEEEEEEE
T ss_pred cEEEEEEEECCCCceEECCC--C-CEEEEEEEEEcccCccCCCEEEeeEEEEEEEEhHHhh-hhc-cCCCCEEEEEEEE
Confidence 78999999999999997542 2 257777765 22342 2 89999999999 555 9999999999875
No 54
>3u58_A Tetrahymena TEB1 AB; tetrahymena, telomerase, TEB1, processivity factor, DNA BIND protein-DNA complex; HET: DNA; 2.61A {Tetrahymena thermophila}
Probab=83.06 E-value=8.8 Score=33.85 Aligned_cols=85 Identities=13% Similarity=0.183 Sum_probs=63.6
Q ss_pred cCCCCCceEEEEEEEeeccccccccCCCCceeEEEEEEeCCC-CeEEEEEchhHHHHHHhhcccCcEEEEeceEEecCCC
Q 006263 214 LNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDG-GEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQK 292 (653)
Q Consensus 214 L~p~~~~w~I~~RV~~k~~ir~~~~~~g~gk~f~~~L~D~~g-~~I~at~f~~~~~kf~~~l~eG~vy~is~~~V~~a~~ 292 (653)
|.......++.|.|+..-. ..+-+.+-++|... -+.++++|.++|-.|.+.+..++||++..|--...|
T Consensus 126 lktskqylsvlaqvvdiqs---------sdknirlkicdnscnqelkvvifpdlcyewrdkfsinkwyyfnefvrqiyn- 195 (213)
T 3u58_A 126 LKTSKQYLSVLAQVVDIQS---------SDKNIRLKICDNSCNQELKVVIFPDLCYEWRDKFSINKWYYFNEFVRQIYN- 195 (213)
T ss_dssp TTCCCSEEEEEEEEEEEEE---------CSSCEEEEEECTTCSCCEEEEECTTTTGGGTTCCCTTCEEEEEEEEECCSS-
T ss_pred HHHhHHHHHHHHHhhcccc---------CCCceEEEeecccccceeEEEEchhHhhHhhhhcchhhhhhHHHHHHHHhh-
Confidence 4555567889999987421 13557889999653 589999999999999999999999999998543332
Q ss_pred cccCCCCceEEEeccccEEEec
Q 006263 293 NFNHLKNEWEIFLEATSTVDLC 314 (653)
Q Consensus 293 ~f~~~~~~yei~f~~~T~I~~~ 314 (653)
.+..+.-+-++.|.+.
T Consensus 196 ------devqlknnihssikes 211 (213)
T 3u58_A 196 ------DEVQLKNNIHSSIKES 211 (213)
T ss_dssp ------SSCEEECCTTCEEEEC
T ss_pred ------hhhhhhhhhhhhhccc
Confidence 2355666667788775
No 55
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=82.72 E-value=3.4 Score=35.77 Aligned_cols=67 Identities=16% Similarity=0.169 Sum_probs=51.8
Q ss_pred CCCceEEEEEEEeeccccccccCCCCceeEEEEEE-e-----CC----CCeEEEEEchhHHHHHHhhcccCcEEEEeceE
Q 006263 217 YQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL-D-----SD----GGEIRVTCFNAVVDRFYEIIEVGRVYLISKGS 286 (653)
Q Consensus 217 ~~~~w~I~~RV~~k~~ir~~~~~~g~gk~f~~~L~-D-----~~----g~~I~at~f~~~~~kf~~~l~eG~vy~is~~~ 286 (653)
.+++.+|.|||++--.+|...+ | ..+.+|.|. + ++ ..-|++++|+..++.....|+.|+.+.+.+..
T Consensus 4 mmN~v~l~G~l~~dpe~r~t~~--G-~~v~~f~la~~~~~~~~~g~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~l 80 (116)
T 3vdy_A 4 MFNQVMLVGRLTKDPDLRYTSA--G-AAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRI 80 (116)
T ss_dssp CCCCEEEEEEESSCCEEEECTT--S-CEEEEEEEEEECSSCCSSSCCCEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEE
T ss_pred eEeEEEEEEEEccCcEEEECCC--C-CEEEEEEEEEeccccCCCCccccEEEEEEEECHHHHHHHHhCCCCCEEEEEEEE
Confidence 4578999999999988887543 2 256666664 2 11 23599999999999999999999999999753
No 56
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=82.49 E-value=5.1 Score=34.36 Aligned_cols=67 Identities=12% Similarity=0.131 Sum_probs=52.7
Q ss_pred CCCceEEEEEEEeeccccccccCCCCceeEEEEEEe------CCCCeEEEEEchhHHHHHHhhcccCcEEEEece
Q 006263 217 YQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLD------SDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKG 285 (653)
Q Consensus 217 ~~~~w~I~~RV~~k~~ir~~~~~~g~gk~f~~~L~D------~~g~~I~at~f~~~~~kf~~~l~eG~vy~is~~ 285 (653)
.++.-.+.||+++--++|...+ |...+.+|.|+= ++.+-|++++|+..++.....|..|+-+.|.+=
T Consensus 10 ~~~~v~LiGrL~~DPelR~t~~--g~~~va~f~lAv~~~~~~~~t~fi~vv~wgk~AE~~~~yl~KG~~V~VeGr 82 (108)
T 3koj_A 10 HMNSCILQATVVEAPQLRYAQD--NQTPVAEMVVQFPGLSSKDAPARLKVVGWGAVAQELQDRCRLNDEVVLEGR 82 (108)
T ss_dssp SCEEEEEEEEEEEEEEEEECTT--SSSEEEEEEEEECC-----CCEEEEEEEETHHHHHHHHHCCTTCEEEEEEE
T ss_pred ccceEEEEEEECCCCEEEEeCC--CCEEEEEEEEEECCcccCCCcEEEEEEEEhHHHHHHHHhCCCCCEEEEEEE
Confidence 3567889999999999997643 223677777652 245679999999999999999999999988863
No 57
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=82.32 E-value=2.4 Score=38.84 Aligned_cols=67 Identities=16% Similarity=0.267 Sum_probs=51.7
Q ss_pred CCCCceEEEEEEEeeccccccccCCCCceeEEEEEE-eC------C-----CCeEEEEEchhHHHHHHhhcccCcEEEEe
Q 006263 216 PYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL-DS------D-----GGEIRVTCFNAVVDRFYEIIEVGRVYLIS 283 (653)
Q Consensus 216 p~~~~w~I~~RV~~k~~ir~~~~~~g~gk~f~~~L~-D~------~-----g~~I~at~f~~~~~kf~~~l~eG~vy~is 283 (653)
|..++.+|.|||++--.+|...+ | ..+.+|.|+ +. + ..-|++++|+..++.....|+.|+-++|.
T Consensus 14 ~~~N~V~LiGrL~~DPelr~t~~--G-~~va~f~lAv~~r~~~~~~Ge~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~Ve 90 (153)
T 1z9f_A 14 SFFNKIILIGRLVRDPEERYTLS--G-TPVTTFTIAVDRVPRKNAPDDAQTTDFFRIVTFGRLAEFARTYLTKGRLVLVE 90 (153)
T ss_dssp SCCCCEEEEEEESSCCEEEECC-----CEEEEEEEEEEC-----------CEEEEEEEEEHHHHHHHHHHCCTTCEEEEE
T ss_pred cceeEEEEEEEECCCCEEEECCC--C-CEEEEEEEEEcCCccccCCCCEeeeEEEEEEEECHHHHHHHhhCCCCCEEEEE
Confidence 45688999999999999987643 2 257777764 21 1 23489999999999999999999999998
Q ss_pred ce
Q 006263 284 KG 285 (653)
Q Consensus 284 ~~ 285 (653)
+-
T Consensus 91 Gr 92 (153)
T 1z9f_A 91 GE 92 (153)
T ss_dssp EE
T ss_pred EE
Confidence 63
No 58
>3rn5_A Interferon-inducible protein AIM2; OB fold, DNA binding, cytosolic, immune system-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 3rn2_A*
Probab=81.23 E-value=37 Score=32.01 Aligned_cols=175 Identities=13% Similarity=0.104 Sum_probs=116.1
Q ss_pred EEEEEEeeccccccccCCCCceeEEEEEEeCCCCeEEEEEchhHHHHHHhhcccCcEEEEeceEEecCCCcccCCCCceE
Q 006263 223 IKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWE 302 (653)
Q Consensus 223 I~~RV~~k~~ir~~~~~~g~gk~f~~~L~D~~g~~I~at~f~~~~~kf~~~l~eG~vy~is~~~V~~a~~~f~~~~~~ye 302 (653)
..|.|+.-.+.=+|....|+.++|.-+++- +..-.++-+|+- .+.+.|..+++..||++.- +.--
T Consensus 15 ~~VmVLkaTepF~Ye~~E~~~~MFHATVAT-etqfF~VKVfn~---~LKeKF~pk~iI~ISdY~~-----------~~gf 79 (208)
T 3rn5_A 15 LPVMVLKAKKPFTFETQEGKQEMFHATVAT-EKEFFFVKVFNT---LLKDKFIPKRIIIIARYYR-----------HSGF 79 (208)
T ss_dssp EEEEEEEECCCEEEEETTEEEEEEEEEEEC-SSCEEEEEECCG---GGGGTCCTTCEEEEESBEE-----------CSSC
T ss_pred eEEEEEeccCCeeeecccccceEEEEEEee-ccceEEEEEecc---hhhhhcCCCcEEEEEeccc-----------ccce
Confidence 356677766766777666555799999999 799999999997 4577899999999999742 2233
Q ss_pred EEeccccEEEecc-CCCCCCCccc----ceecchhhhhhcccCccccEEEEEEEecCceeEEecCCceeeEEEEEEEeCC
Q 006263 303 IFLEATSTVDLCT-EEDDSIPKQQ----FSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTS 377 (653)
Q Consensus 303 i~f~~~T~I~~~~-d~~~~iP~~~----f~f~~i~~i~~~~~~~~vDVIGvV~~v~~~~~i~~k~g~~~~kr~i~l~D~s 377 (653)
|..++.|.|.++. |..-.||... -.=-+|++|.....+.+|+=+=.|.... .+ + ...-..|.|.+
T Consensus 80 LEi~~~SsVse~~~dq~~eVp~~ii~~A~~TPKI~~L~~q~~Gt~V~G~F~v~KK~------v~--~--~~~~YeI~DnT 149 (208)
T 3rn5_A 80 LEVNSASRVLDAESDQKVNVPLNIIRKAGETPKINTLQTQPLGTIVNGLFVVQKVT------EK--K--KNILFDLSDNT 149 (208)
T ss_dssp EEECTTSEEEECCTTCCCCCCHHHHHHHHSCCCHHHHHTSCSSCEEEEEEEEEEEE------EC--S--SEEEEEEEETT
T ss_pred EEEecccEEEEccCCceeecCHHHHHhcccCcchhhhhcCCCCCEEeEEEEEEEEE------ec--c--ceEEEEEecCC
Confidence 5667888998884 3334567532 1234588887777777766433333211 11 1 23456899999
Q ss_pred CCEEEEEEccchhhhhhhhHHHhhccCCCcEEEEEeeEeecCCCc-eeccccceEE
Q 006263 378 GRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGK-SIGTIPSTQL 432 (653)
Q Consensus 378 ~~~i~vtLWg~~A~~~~~~l~~~~~~~~~~Vvaik~~rV~~f~G~-sLs~~~~S~i 432 (653)
| .++|...|.+... ...+|+=+-+....++..+++ .|.+...|-|
T Consensus 150 G-~MeVvv~G~~~~i---------~CEeGDKLrL~cFeL~~~~~~~qL~s~~HSfi 195 (208)
T 3rn5_A 150 G-KMEVLGVRNEDTM---------KCKEGDKVRLTFFTLSKNGEKLQLTSGVHSTI 195 (208)
T ss_dssp E-EEEEEEECSTGGG---------SCCTTCEEEEEEEEEEECSSSEEEECCTTCEE
T ss_pred C-cEEEEEeccCccc---------ccCCCCeeEEEEEEEeccCCeeeEEEecceeE
Confidence 9 7999999998643 234566666665666544443 5655555544
No 59
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=80.49 E-value=7.4 Score=34.39 Aligned_cols=75 Identities=9% Similarity=0.139 Sum_probs=48.9
Q ss_pred EEEEEEeCCC-eEEEEEechhhhhhhCCCHHHHHHHhhccCChhHHHHHHHHhcCceEEEEEEEeeeccCceeeEEEEEE
Q 006263 551 LQAQIQDQTG-LTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVI 629 (653)
Q Consensus 551 l~~~i~D~Tg-~~~~~~F~~~ae~llG~sA~el~~~~~e~~d~~~~~~~~~~~~~k~~~f~v~~k~~~y~~e~r~~~~v~ 629 (653)
+.+.|.|+|| .+.+..|.+....- .+ . ..+ -.|. .++|..+...|++. ....+.
T Consensus 50 ~~~~ldD~TG~~I~~~~W~~~~~~~-----~~----~------~~~------~~g~--yVrV~G~l~~f~g~--~qi~~~ 104 (132)
T 3kdf_D 50 IVYKIDDMTAAPMDVRQWVDTDDTS-----SE----N------TVV------PPET--YVKVAGHLRSFQNK--KSLVAF 104 (132)
T ss_dssp EEEEEECSSSSCEEEEEEC------------------------CCC------CTTC--EEEEEEEEEEETTE--EEEEEE
T ss_pred EEEEEECCCCCEEEEEEEccCCCcc-----cc----c------ccc------cCCC--EEEEEEEEEeECCE--EEEEEE
Confidence 6788999999 99999998754210 00 0 000 0122 56677777789975 456677
Q ss_pred EeecC-ChHHHHHHHHHHHHhh
Q 006263 630 RADQV-NYSSESRYLLDLISKS 650 (653)
Q Consensus 630 ~~~~v-d~~~e~~~ll~~i~~~ 650 (653)
++.|+ |+.+..-.+|+.|...
T Consensus 105 ~ir~v~d~Nei~~H~Le~i~~h 126 (132)
T 3kdf_D 105 KIMPLEDMNEFTTHILEVINAH 126 (132)
T ss_dssp EEEECSSTHHHHHHHHHHHHHH
T ss_pred EEEEcCCccHHHHHHHHHHHHH
Confidence 77777 7899999999998754
No 60
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A
Probab=80.22 E-value=2.9 Score=37.39 Aligned_cols=65 Identities=15% Similarity=0.056 Sum_probs=51.8
Q ss_pred CceEEEEEEEeeccccccccCCCCceeEEEEEE-----eCCCC------eEEEEEchhHHHHHHhhcccCcEEEEeceE
Q 006263 219 GRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL-----DSDGG------EIRVTCFNAVVDRFYEIIEVGRVYLISKGS 286 (653)
Q Consensus 219 ~~w~I~~RV~~k~~ir~~~~~~g~gk~f~~~L~-----D~~g~------~I~at~f~~~~~kf~~~l~eG~vy~is~~~ 286 (653)
++..+.||+++--++|...+ | ..+.+|.|. ++.|. .|++++|+..++.....|..|+-++|.++.
T Consensus 20 NkViLiGrL~~DPElRyTps--G-~~Va~ftLA~~~~~~~~G~~~~~~~~i~vv~wGk~AE~~~~yl~KGs~V~VeGrL 95 (134)
T 1v1q_A 20 NRLVLSGTVCRAPLRKVSPS--G-IPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSITVGSRITVQGFI 95 (134)
T ss_dssp EEEEEEEEEEEEEEEEECTT--C-CEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESTGGGGGGTTCCTTCEEEEEEEE
T ss_pred eEEEEEEEECcCCceEECCC--C-CEEEEEEEEEeCcCcCCCCEecceEEEEEEEEhHHHHHHHHhcCCCCEEEEEEEE
Confidence 78999999999999997542 3 257777664 32331 399999999999999999999999999764
No 61
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=79.33 E-value=4.6 Score=37.49 Aligned_cols=65 Identities=18% Similarity=0.288 Sum_probs=51.0
Q ss_pred CCceEEEEEEEeeccccccccCCCCceeEEEEEE------eC--------CCCeEEEEEchhHHHHHHhhcccCcEEEEe
Q 006263 218 QGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL------DS--------DGGEIRVTCFNAVVDRFYEIIEVGRVYLIS 283 (653)
Q Consensus 218 ~~~w~I~~RV~~k~~ir~~~~~~g~gk~f~~~L~------D~--------~g~~I~at~f~~~~~kf~~~l~eG~vy~is 283 (653)
.++.+|.+||++--++|...+ | ..+.+|.|. |. +..-|++++|+.+++.....|+.|+.++|.
T Consensus 4 ~N~V~LiG~L~~dPelr~t~~--G-~~va~f~lAv~~~~~~~~~Ge~~d~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~Ve 80 (168)
T 3afp_A 4 DTTITIVGNLTADPELRFTSS--G-AAVVNFTVASTPRIYDRQSGEWKDGEALFLRCNIWREAAENVAESLTRGARVIVT 80 (168)
T ss_dssp CCEEEEEEEESSSCCCEECTT--S-CEEEEEEEEECC--------CCCCCCCEEEEEEEEHHHHHHHHHHCCTTCEEEEE
T ss_pred cCEEEEEEEECCCCEEEECCC--C-CEEEEEEEEEccccccccCCcEecCCcEEEEEEEehHHHHHHHHhCCCCCEEEEE
Confidence 478999999999999987643 2 256677665 21 234699999999999999999999999998
Q ss_pred ce
Q 006263 284 KG 285 (653)
Q Consensus 284 ~~ 285 (653)
.-
T Consensus 81 Gr 82 (168)
T 3afp_A 81 GR 82 (168)
T ss_dssp EE
T ss_pred EE
Confidence 63
No 62
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=78.83 E-value=8.9 Score=41.49 Aligned_cols=97 Identities=13% Similarity=0.046 Sum_probs=65.0
Q ss_pred ceeccccCCCCC-ceEEEEEEEeeccccccccCCCCc-eeEEEEEEeCCCCeEEEEEchhHHHHHH--hhcccCcEEEEe
Q 006263 208 IIPIAALNPYQG-RWAIKARVTAKGDLRRYNNARGDG-KVFSFDLLDSDGGEIRVTCFNAVVDRFY--EIIEVGRVYLIS 283 (653)
Q Consensus 208 ~~pI~~L~p~~~-~w~I~~RV~~k~~ir~~~~~~g~g-k~f~~~L~D~~g~~I~at~f~~~~~kf~--~~l~eG~vy~is 283 (653)
.+.|++|....+ ..+|+|||.++ |. .| ++.-++|.| .+|.||+++-.+....++ ..|..|+++.+.
T Consensus 19 ~~~i~~~~~~~g~~V~v~Gwv~~~---R~------~Gk~~~Fi~LrD-~sg~iQvv~~~~~~~~~~~~~~l~~g~~V~V~ 88 (456)
T 3m4p_A 19 VCNIRDAAGLEGKLVTFKGWAYHI---RK------ARKTLIFVELRD-GSGYCQCVIFGKELCEPEKVKLLTRECSLEIT 88 (456)
T ss_dssp CEECCSTTCCCSSEEEEEEEEEEE---EC------CSSSEEEEEEEC-SSCEEEEEEESTTTTCHHHHTTCCTTCEEEEE
T ss_pred EEEhhhhhhcCCCEEEEEEEEEEE---ec------CCCceEEEEEEe-CCccEEEEEecccchhhHHhhcCCCccEEEEE
Confidence 467888865543 68899999875 33 24 477788999 677999999763222222 358999999999
Q ss_pred ceEEecCCCcccC---CCCceEEEeccccEEEec
Q 006263 284 KGSLKPAQKNFNH---LKNEWEIFLEATSTVDLC 314 (653)
Q Consensus 284 ~~~V~~a~~~f~~---~~~~yei~f~~~T~I~~~ 314 (653)
+--++...+.-++ +..++||...+-..+..+
T Consensus 89 G~v~~~~~~~~~~~~~t~g~~El~~~~i~vl~~a 122 (456)
T 3m4p_A 89 GRLNAYAGKNHPPEIADILNLEMQVTEWKVIGES 122 (456)
T ss_dssp EEEECCCSSSCCCSCTTBCSSEEEEEEEEEEECC
T ss_pred eEEEecCCcccCcccCCCCcEEEEEeEEEEEecC
Confidence 7555432222111 226799999887777766
No 63
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A
Probab=77.05 E-value=2.4 Score=40.03 Aligned_cols=72 Identities=17% Similarity=0.148 Sum_probs=53.5
Q ss_pred ceEEEEEEEeeccccccccCCCC-ceeEEEEEEeCC----CCeEEEEEchhHHHHHHhhcccCcEEEEeceEEecCCCc
Q 006263 220 RWAIKARVTAKGDLRRYNNARGD-GKVFSFDLLDSD----GGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKN 293 (653)
Q Consensus 220 ~w~I~~RV~~k~~ir~~~~~~g~-gk~f~~~L~D~~----g~~I~at~f~~~~~kf~~~l~eG~vy~is~~~V~~a~~~ 293 (653)
.-.+.|.|+.-...+.- .+|. .-...|.|.|.. +..|.+.+|.+..+.+=....+|||+.+++++|+.-+..
T Consensus 44 ~VNviGVVvd~~~P~~S--~rGtkD~~~TltI~D~S~~~~~~gL~v~iF~~~~e~LP~V~~~GDIIlL~rvkiq~~~g~ 120 (187)
T 1qzg_A 44 IVNLFGIVKDFTPSRQS--LHGTKDWVTTVYLWDPTCDTSSIGLQIHLFSKQGNDLPVIKQVGQPLLLHQITLRSYRDR 120 (187)
T ss_dssp EEEEEEEEEEEEEEEEC--SSTTCCEEEEEEEECTTSCTTSCCEEEEEEESSSSCSCCCCSTTCEEEEEEEEEEEETTE
T ss_pred EEEEEEEEEEccCceec--CCCCccEEEEEEEEeCCCCCCCCceEEEEECCChhhCCCCCCCCCEEEEEEEEEEEECCe
Confidence 56788888877665542 1455 467889999965 568999999876555544449999999999999876644
No 64
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3
Probab=76.37 E-value=2.1 Score=40.27 Aligned_cols=65 Identities=22% Similarity=0.280 Sum_probs=50.4
Q ss_pred CCceEEEEEEEeeccccccccCCCCceeEEEEEE------eCC-C------CeEEEEEchhHHHHHHhhcccCcEEEEec
Q 006263 218 QGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL------DSD-G------GEIRVTCFNAVVDRFYEIIEVGRVYLISK 284 (653)
Q Consensus 218 ~~~w~I~~RV~~k~~ir~~~~~~g~gk~f~~~L~------D~~-g------~~I~at~f~~~~~kf~~~l~eG~vy~is~ 284 (653)
+++.+|.+||++.-++|...+ | ..+.+|.|. |.+ | .-|++++|+..++.....|+.|+.++|.+
T Consensus 6 ~N~V~LiGrL~~dPelr~t~~--G-~~v~~f~LAv~~~~~d~~~Ge~~~~t~~i~vv~wg~~Ae~~~~~l~KG~~V~VeG 82 (178)
T 1eqq_A 6 VNKVILVGNLGQDPEVRYMPN--G-GAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEG 82 (178)
T ss_dssp EEEEEEEEEESSSCCCCEETT--T-EECCCCEEEEEECCCCSSSSSCCCEEEEEEEEECHHHHHHHHHHCCTTCEEEECC
T ss_pred eeEEEEEEEECCCCEEEECCC--C-CEEEEEEEEEcCCeecCCCCceecccEEEEEEEccHHHHHHHHhcCCCCEEEEEE
Confidence 467899999999999987643 2 245555553 323 2 35899999999999999999999999997
Q ss_pred e
Q 006263 285 G 285 (653)
Q Consensus 285 ~ 285 (653)
.
T Consensus 83 r 83 (178)
T 1eqq_A 83 Q 83 (178)
T ss_dssp E
T ss_pred E
Confidence 5
No 65
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=76.31 E-value=4.7 Score=36.46 Aligned_cols=65 Identities=20% Similarity=0.247 Sum_probs=51.7
Q ss_pred CCceEEEEEEEeeccccccccCCCCceeEEEEEE------eC-------CCCeEEEEEchhHHHHHHhhcccCcEEEEec
Q 006263 218 QGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL------DS-------DGGEIRVTCFNAVVDRFYEIIEVGRVYLISK 284 (653)
Q Consensus 218 ~~~w~I~~RV~~k~~ir~~~~~~g~gk~f~~~L~------D~-------~g~~I~at~f~~~~~kf~~~l~eG~vy~is~ 284 (653)
+++.+|.+||++--++|...+ | ..+.+|.|+ |+ +..-|.+++|+..++.....|+.|+.++|.+
T Consensus 5 mN~v~L~GrL~~dPelr~t~~--G-~~v~~f~lA~~~~~~~~~~Ge~~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G 81 (145)
T 1qvc_A 5 VNKVILVGNLGQDPEVRYMPN--G-GAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEG 81 (145)
T ss_dssp EEEEEEEEEESSCCEEECCSS--S-CCEEEEEEEECCCCSCCSSSSCCCCCEEEEEEEETHHHHHHHHHCCTTCEEEEEE
T ss_pred eEEEEEEEEeCCCCEEEECCC--C-CEEEEEEEEEcCCcccccCCcEecccEEEEEEEehHHHHHHHHhcCCCCEEEEEE
Confidence 467899999999988887643 2 257777774 22 2346999999999999999999999999997
Q ss_pred e
Q 006263 285 G 285 (653)
Q Consensus 285 ~ 285 (653)
.
T Consensus 82 ~ 82 (145)
T 1qvc_A 82 Q 82 (145)
T ss_dssp E
T ss_pred E
Confidence 4
No 66
>4dam_A Single-stranded DNA-binding protein 1; OB-fold; 1.70A {Streptomyces coelicolor}
Probab=75.94 E-value=4.2 Score=36.00 Aligned_cols=63 Identities=16% Similarity=0.144 Sum_probs=50.7
Q ss_pred CCceEEEEEEEeeccccccccCCCCceeEEEEEE------eCC--------CCeEEEEEchhHHHHHHhhcccCcEEEEe
Q 006263 218 QGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL------DSD--------GGEIRVTCFNAVVDRFYEIIEVGRVYLIS 283 (653)
Q Consensus 218 ~~~w~I~~RV~~k~~ir~~~~~~g~gk~f~~~L~------D~~--------g~~I~at~f~~~~~kf~~~l~eG~vy~is 283 (653)
.++-+|.||+.+--++|...+ |.+.+|.|+ |.+ ..-|++++|+..++.....|+.|+-++|.
T Consensus 15 ~N~V~LiGrL~~dPelr~t~~----G~v~~fslAv~~~~~d~~~Ge~~d~~t~w~~v~~wg~~Ae~~~~~l~KG~~V~Ve 90 (128)
T 4dam_A 15 EIMICAVGNVATTPVFRDLAN----GPSVRFRLAVTARYWDREKNAWTDGHTNFFTVWANRQLATNASGSLAVGDPVVVQ 90 (128)
T ss_dssp CCEEEEEEEECSCCEEEEETT----EEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEHHHHHHHHHHCCTTCEEEEE
T ss_pred eeEEEEEEEECCCCEEEEcCC----CCEEEEEEEEcCceecccCCceecCCcEEEEEEEEcHHHHHHHHhcCCCCEEEEE
Confidence 367899999999999987643 377777664 422 34589999999999999999999999988
Q ss_pred c
Q 006263 284 K 284 (653)
Q Consensus 284 ~ 284 (653)
+
T Consensus 91 G 91 (128)
T 4dam_A 91 G 91 (128)
T ss_dssp E
T ss_pred E
Confidence 7
No 67
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=75.65 E-value=9 Score=42.18 Aligned_cols=79 Identities=20% Similarity=0.277 Sum_probs=58.9
Q ss_pred CceEEEEEEEeeccccccccCCCCc-eeEEEEEEeCCCCeEEEEEchhHH------HHHHhhcccCcEEEEeceEEecCC
Q 006263 219 GRWAIKARVTAKGDLRRYNNARGDG-KVFSFDLLDSDGGEIRVTCFNAVV------DRFYEIIEVGRVYLISKGSLKPAQ 291 (653)
Q Consensus 219 ~~w~I~~RV~~k~~ir~~~~~~g~g-k~f~~~L~D~~g~~I~at~f~~~~------~kf~~~l~eG~vy~is~~~V~~a~ 291 (653)
...+|.|||.++ |. .| ++.-++|.| .+|.||+.+..+.+ +++...|..|+++.+.+.-++..
T Consensus 56 ~~V~v~Grv~~~---R~------~gkk~~F~~LrD-~sg~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t~- 124 (521)
T 3bju_A 56 ITLKVAGRIHAK---RA------SGGKLIFYDLRG-EGVKLQVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTK- 124 (521)
T ss_dssp CCEEEEEEEEEE---EE------SSSSEEEEEEEE-TTEEEEEEEEGGGSSCHHHHHHHHHHCCTTCEEEEEEEEEECT-
T ss_pred cEEEEEEEEEEE---ec------CCCCcEEEEEEE-CCEEEEEEEECCccCCHHHHHHHHhcCCCCCEEEEEEEEEecC-
Confidence 468999999875 33 35 777789999 67899999975432 33445699999999998755443
Q ss_pred CcccCCCCceEEEeccccEEEec
Q 006263 292 KNFNHLKNEWEIFLEATSTVDLC 314 (653)
Q Consensus 292 ~~f~~~~~~yei~f~~~T~I~~~ 314 (653)
...+||...+-..+..|
T Consensus 125 ------~ge~ei~~~~i~~l~~~ 141 (521)
T 3bju_A 125 ------KGELSIIPYEITLLSPC 141 (521)
T ss_dssp ------TCCEEEEEEEEEEEECC
T ss_pred ------CCCEEEEEeEEEEeecC
Confidence 24799999887777766
No 68
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}
Probab=74.48 E-value=4.9 Score=38.24 Aligned_cols=65 Identities=18% Similarity=0.292 Sum_probs=49.2
Q ss_pred CCceEEEEEEEeeccccccccCCCCceeEEEEEE------eCCC-------CeEEEEEchh-HHHHHHhhcccCcEEEEe
Q 006263 218 QGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL------DSDG-------GEIRVTCFNA-VVDRFYEIIEVGRVYLIS 283 (653)
Q Consensus 218 ~~~w~I~~RV~~k~~ir~~~~~~g~gk~f~~~L~------D~~g-------~~I~at~f~~-~~~kf~~~l~eG~vy~is 283 (653)
+++.+|.+||++--++|...+ | ..+.+|.|+ |.++ .-|++++|++ +++.....|+.|+.++|.
T Consensus 26 mNkV~LiGrLg~DPElR~t~~--G-~~Va~FsLAvnr~~kd~~~Ge~~e~Tdwi~Vvawgk~lAe~~~~yL~KGs~V~Ve 102 (193)
T 3pgz_A 26 LNKVILIGNLGADPEIRRLNS--G-DQVANLRIATSESWRDRNTNERKERTEWHNIVIFNENLVKVVEQYLKKGSKIYIE 102 (193)
T ss_dssp EEEEEEEEEESSCCEEEECTT--S-CEEEEEEEEEEEEECCC-----EEEEEEEEEEECCHHHHHHHHHHCCTTCEEEEE
T ss_pred cCEEEEEEEECCCCeEEECCC--C-CEEEEEEEEEcCceeccCCCceeeeeEEEEEEEECHHHHHHHHhhcCCCCEEEEE
Confidence 478999999999999987643 2 256677664 3222 3389999996 888888899999999998
Q ss_pred ce
Q 006263 284 KG 285 (653)
Q Consensus 284 ~~ 285 (653)
.-
T Consensus 103 Gr 104 (193)
T 3pgz_A 103 GQ 104 (193)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 69
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}
Probab=74.10 E-value=72 Score=31.53 Aligned_cols=175 Identities=11% Similarity=0.044 Sum_probs=93.6
Q ss_pred CCCceEEEEEEEeeccccccccCCCCceeEEEEEEe--C-----CCCeEEEEEch-hHHHHHHhhcccCcEEEEec-eEE
Q 006263 217 YQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLD--S-----DGGEIRVTCFN-AVVDRFYEIIEVGRVYLISK-GSL 287 (653)
Q Consensus 217 ~~~~w~I~~RV~~k~~ir~~~~~~g~gk~f~~~L~D--~-----~g~~I~at~f~-~~~~kf~~~l~eG~vy~is~-~~V 287 (653)
..|+..+.||+++- ++|...+ |.--+|+|.+.= . +.+-|.+++|+ ..++...+.|+.|+-+.|.+ .+.
T Consensus 29 ~~N~viLiGrLtrd-ElRyT~~--g~~a~~~lav~~~~~~~ge~~~df~~vv~wg~k~AE~~~~yl~kG~~V~VeGrL~~ 105 (257)
T 4dni_A 29 CVNHCVMLGVVQNI-QEGFVFE--DKVLQFTLITDFEGPSPGDPDKDFHTVRVFDSDYSSRVKEQLRDGEWFLVTGRLRM 105 (257)
T ss_dssp CSEEEEEEEEEEEE-EEEEETT--EEEEEEEEEEECCCCCSSCCCEEEEEEEECSHHHHHHHHHHCCTTCEEEEEEEEEE
T ss_pred cCcEEEEEEEEece-EEEECCC--CCEEEEEEEEEecCCCCCCCcccEEEEEEECCHHHHHHHHhccCCCEEEEEEEEEE
Confidence 34789999999999 9997532 211346655431 1 12346667999 89999999999999998876 333
Q ss_pred ecCCCcccCCCCceEEEeccccEEEeccCCCCCCCcccceecchhhhhh---cccCccccEEEEEEEecCceeEEecCCc
Q 006263 288 KPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIES---AENNSIVDVIGIVISVNPSVPILRKNGM 364 (653)
Q Consensus 288 ~~a~~~f~~~~~~yei~f~~~T~I~~~~d~~~~iP~~~f~f~~i~~i~~---~~~~~~vDVIGvV~~v~~~~~i~~k~g~ 364 (653)
... +=-.-...+|+.+.. |.+. .. .+....+... +..-..|-+||.+ . +++.-.+. |+
T Consensus 106 ~~~--~dG~kr~~~evva~~---v~~~---~G-------~~~~v~~~~g~~~M~~lNkV~LiGrL-~--DPElR~t~-G~ 166 (257)
T 4dni_A 106 VPQ--YDGSMRKYYHYPVIQ---VHPG---CG-------SVLKVKLASGAGHMKSVNSVTLVGVV-H--DIQSGFVY-ED 166 (257)
T ss_dssp EEE--ECSSSSSEEEEEEEE---ECTT---TC-------EEEEGGGSCSSCTTSCEEEEEEEEEE-E--EEEEEEET-TE
T ss_pred eEC--CCCCcEEEEEEEEEE---EEec---CC-------cceeeecccccccccccCEEEEEEEc-C--CCEEEEeC-Cc
Confidence 111 101122345666543 1111 01 0111112211 1112357788888 2 22221233 65
Q ss_pred eeeEEEEEEE----eCCC-------CEEEEEEccch--hhhhhhhHHHhhccCCCcEEEEE-eeEeecCC
Q 006263 365 ETQRRILNLK----DTSG-------RSVELTLWGDF--CNKEGQKLQEMVDVGFFPVLSVK-SGKVNDFS 420 (653)
Q Consensus 365 ~~~kr~i~l~----D~s~-------~~i~vtLWg~~--A~~~~~~l~~~~~~~~~~Vvaik-~~rV~~f~ 420 (653)
.+.+-.|-.- |..+ .-++|++||+. |+ +. +.+ ..|.-|.+. ..+.+.|.
T Consensus 167 ~Va~FslAv~~~~~~~~~~e~~~~Tdw~~Vv~wgk~~~AE-i~----~~L--~KG~~V~VeGrL~tr~~~ 229 (257)
T 4dni_A 167 AVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAE-VK----QKV--KEGNVVCVNGRLRLSPQL 229 (257)
T ss_dssp EEEEEEEEEEEEECCCTTCSCEEEEEEEEEEEESHHHHHH-HH----HHC--CTTCEEEEEEEEEEEEEE
T ss_pred EEEEEEEEECCCccCCCCceEccceEEEEEEEECCccHHH-HH----hhC--CCCCEEEEEEEEEeeeEE
Confidence 4432222221 2211 15899999999 87 43 322 346666665 44666663
No 70
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=74.07 E-value=11 Score=40.56 Aligned_cols=89 Identities=12% Similarity=0.111 Sum_probs=62.1
Q ss_pred ccccCCC--CCceEEEEEEEeeccccccccCCCCceeEEEEEEeCCCCeEEEEEchhHH--H--HHHhhcccCcEEEEec
Q 006263 211 IAALNPY--QGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV--D--RFYEIIEVGRVYLISK 284 (653)
Q Consensus 211 I~~L~p~--~~~w~I~~RV~~k~~ir~~~~~~g~gk~f~~~L~D~~g~~I~at~f~~~~--~--kf~~~l~eG~vy~is~ 284 (653)
|.+|... ....+|+|||.++ |. .|++.-++|.| .+|.||+++-.+.+ + ++...|..|+++.+.+
T Consensus 7 ~~~l~~~~~~~~V~v~G~v~~~---R~------~g~~~F~~lrD-~~g~iQ~v~~~~~~~~~~~~~~~~l~~~~~v~v~G 76 (434)
T 1x54_A 7 CQEVKPELDGKKVRLAGWVYTN---MR------VGKKIFLWIRD-STGIVQAVVAKNVVGEETFEKAKKLGRESSVIVEG 76 (434)
T ss_dssp GGGCCGGGTTCEEEEEEEEEEE---EE------ETTEEEEEEEE-TTEEEEEEECHHHHCHHHHHHHHTCCTTCEEEEEE
T ss_pred HHHhhHHhCCCEEEEEEEEEEE---ec------CCCeEEEEEEE-CCEEEEEEEECCcCCHHHHHHHhcCCCCCEEEEEE
Confidence 4555432 2468999999885 33 25777789999 67899999975432 1 2235699999999998
Q ss_pred eEEecCCCcccCCCCceEEEeccccEEEec
Q 006263 285 GSLKPAQKNFNHLKNEWEIFLEATSTVDLC 314 (653)
Q Consensus 285 ~~V~~a~~~f~~~~~~yei~f~~~T~I~~~ 314 (653)
.-.+.... ...+||...+-..+..+
T Consensus 77 ~v~~~~~~-----~~~~el~~~~~~vl~~~ 101 (434)
T 1x54_A 77 IVKADERA-----PGGAEVHVEKLEVIQAV 101 (434)
T ss_dssp EEEECTTS-----GGGEEEEEEEEEEEECC
T ss_pred EEEecCCC-----CccEEEEEeEEEEeecC
Confidence 75544321 35799999887666665
No 71
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=72.72 E-value=9.2 Score=41.03 Aligned_cols=80 Identities=13% Similarity=-0.047 Sum_probs=58.6
Q ss_pred CceEEEEEEEeeccccccccCCCCceeEEEEEEeCCCCeEEEEEchhH--HHHHHhhcccCcEEEEeceEEecCCCcccC
Q 006263 219 GRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAV--VDRFYEIIEVGRVYLISKGSLKPAQKNFNH 296 (653)
Q Consensus 219 ~~w~I~~RV~~k~~ir~~~~~~g~gk~f~~~L~D~~g~~I~at~f~~~--~~kf~~~l~eG~vy~is~~~V~~a~~~f~~ 296 (653)
...+|+|||.++ |. .|++.-++|.| .+|.||+++-.+. .+. ...|..|+++.+.+.-++...
T Consensus 17 ~~V~v~Gwv~~~---R~------~g~~~F~~lrD-~~g~iQ~v~~~~~~~~~~-~~~l~~~~~v~v~G~v~~~~~----- 80 (429)
T 1wyd_A 17 KEVIWAGWVHLL---RD------LGGKKFIILRD-KTGLGQVVVDKNSSAFGI-SQELTQESVIQVRGIVKADKR----- 80 (429)
T ss_dssp CEEEEEEEEEEE---EE------ETTEEEEEEEE-TTEEEEEEECTTSTTHHH-HTTCCTTCEEEEEEEEEECSS-----
T ss_pred CEEEEEEEEEEE---ec------CCCeEEEEEEE-CCeeEEEEEeCChHHHHH-HHhCCCCCEEEEEEEEEecCC-----
Confidence 468999999875 33 25777789999 7889999996532 232 366999999999986554432
Q ss_pred CCCceEEEeccccEEEec
Q 006263 297 LKNEWEIFLEATSTVDLC 314 (653)
Q Consensus 297 ~~~~yei~f~~~T~I~~~ 314 (653)
....+||..++-..+..+
T Consensus 81 ~~~~~el~~~~~~vl~~~ 98 (429)
T 1wyd_A 81 APRGIELHAEEITLLSKA 98 (429)
T ss_dssp SGGGEEEEEEEEEEEECC
T ss_pred CCccEEEEEeEEEEeccC
Confidence 135799999887777766
No 72
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=72.04 E-value=7.5 Score=46.25 Aligned_cols=73 Identities=10% Similarity=0.140 Sum_probs=57.3
Q ss_pred cceeccccCCCCCceEEEEEEEeeccccccccCCCCceeEEEEEEeCCCCeEEEEEchh--HHHHHHhhcccCcEEEEec
Q 006263 207 RIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA--VVDRFYEIIEVGRVYLISK 284 (653)
Q Consensus 207 ~~~pI~~L~p~~~~w~I~~RV~~k~~ir~~~~~~g~gk~f~~~L~D~~g~~I~at~f~~--~~~kf~~~l~eG~vy~is~ 284 (653)
.++||++|.....+.+|.|.|... +.|..++ ...++.+.+.| .++.|.+..|.. ....+.+.|++|.|+.+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~g~v~~~-~~~~~~~---~~~~~~~~~td-~~~~~~~k~f~~~~~~~~~~~~~~~g~~~~~~g 80 (1041)
T 3f2b_A 6 PVRRLETIVEEERRVVVQGYVFDA-EVSELKS---GRTLLTMKITD-YTNSILVKMFSRDKEDAELMSGVKKGMWVKVRG 80 (1041)
T ss_dssp -CBCGGGCCSCEEEEEEEEEEEEE-EEEECTT---SCEEEEEEEEC-SSCEEEEEEECSSHHHHHHHHTCCTTCEEEEEE
T ss_pred CcccHHHhhcccceEEEEEEEEEE-EEEEccC---CCEEEEEEEEe-CCCCEEEEEeecccchHHHHhcCCCCCEEEEEE
Confidence 467999999999999999998764 4566543 23689999999 789999988843 3445677899999998875
No 73
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=71.95 E-value=16 Score=40.73 Aligned_cols=86 Identities=15% Similarity=0.167 Sum_probs=61.1
Q ss_pred CceEEEEEEEeeccccccccCCCCceeEEEEEEeCCCCeEEEEEchhHHHH--HHhhcccCcEEEEeceEEecCCCcccC
Q 006263 219 GRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDR--FYEIIEVGRVYLISKGSLKPAQKNFNH 296 (653)
Q Consensus 219 ~~w~I~~RV~~k~~ir~~~~~~g~gk~f~~~L~D~~g~~I~at~f~~~~~k--f~~~l~eG~vy~is~~~V~~a~~~f~~ 296 (653)
...+|+|||.++ |. -|++.-++|.| .+|.||+++-.+..+. ....|..|+++.+.+.-++...+.-++
T Consensus 16 ~~V~l~GwV~~~---R~------~G~~~Fi~LrD-~~g~iQvv~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~n~ 85 (585)
T 1c0a_A 16 QQVTLCGWVNRR---RD------LGSLIFIDMRD-REGIVQVFFDPDRADALKLASELRNEFCIQVTGTVRARDEKNINR 85 (585)
T ss_dssp CEEEEEEEEEEE---EE------CSSCEEEEEEE-TTEEEEEEECGGGHHHHHHHTTCCTTCEEEEEEEEEECCTTTCCT
T ss_pred CEEEEEEEEEEE---ec------CCCcEEEEEEE-CCeeEEEEEeCCchHHHHHHhcCCCCCEEEEEeEEEccCcccccc
Confidence 468999999875 33 25777799999 6789999996543222 335699999999998755543322222
Q ss_pred --CCCceEEEeccccEEEec
Q 006263 297 --LKNEWEIFLEATSTVDLC 314 (653)
Q Consensus 297 --~~~~yei~f~~~T~I~~~ 314 (653)
....+||...+-..+..+
T Consensus 86 ~~~~geiEl~~~~i~vl~~a 105 (585)
T 1c0a_A 86 DMATGEIEVLASSLTIINRA 105 (585)
T ss_dssp TSTTTTEEEEEEEEEEEECC
T ss_pred cCCCccEEEEEeEEEEEecc
Confidence 346799999887777766
No 74
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=71.92 E-value=14 Score=39.70 Aligned_cols=90 Identities=12% Similarity=0.058 Sum_probs=62.3
Q ss_pred eccccCCC--CCceEEEEEEEeeccccccccCCCCceeEEEEEEeCCCCeEEEEEchhHH----HHHHhhcccCcEEEEe
Q 006263 210 PIAALNPY--QGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV----DRFYEIIEVGRVYLIS 283 (653)
Q Consensus 210 pI~~L~p~--~~~w~I~~RV~~k~~ir~~~~~~g~gk~f~~~L~D~~g~~I~at~f~~~~----~kf~~~l~eG~vy~is 283 (653)
.+.+|+.. ....+|.|||.++ |. .|++.-++|.| .+|.|++++-.+.+ -+....|..|+++.+.
T Consensus 6 ~~~~l~~~~~g~~V~v~Gwv~~~---R~------~g~~~Fi~LrD-~~g~iQ~v~~~~~~~~~~~~~~~~l~~~~~V~V~ 75 (438)
T 3nem_A 6 YSSEITEELNGQKVKVAGWVWEV---KD------LGGIKFLWIRD-RDGIVQITAPKKKVDPELFKLIPKLRSEDVVAVE 75 (438)
T ss_dssp CGGGCCGGGTTCEEEEEEEEEEE---EE------ETTEEEEEEEE-TTEEEEEEEETTTSCHHHHHHGGGCCTTCEEEEE
T ss_pred EHHHcchhcCCCEEEEEEEEEEE---ec------CCCeEEEEEEE-CCeeEEEEEeCCcCCHHHHHHHhcCCCCCEEEEE
Confidence 44555543 2468899999875 33 25777789999 67799999976532 2334569999999998
Q ss_pred ceEEecCCCcccCCCCceEEEeccccEEEec
Q 006263 284 KGSLKPAQKNFNHLKNEWEIFLEATSTVDLC 314 (653)
Q Consensus 284 ~~~V~~a~~~f~~~~~~yei~f~~~T~I~~~ 314 (653)
+.-++... ....+||...+-..+..+
T Consensus 76 G~v~~~~~-----~~~~~el~~~~i~vl~~~ 101 (438)
T 3nem_A 76 GVVNFTPK-----AKLGFEILPEKIVVLNRA 101 (438)
T ss_dssp EEEEECTT-----STTSEEEEEEEEEEEECB
T ss_pred EEEEeCCC-----CCCcEEEEEEEEEEEecC
Confidence 75444322 235799998877777666
No 75
>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A*
Probab=71.43 E-value=11 Score=33.87 Aligned_cols=52 Identities=15% Similarity=0.124 Sum_probs=41.9
Q ss_pred eEEEEEchhHHHHHHhhcccCcEEEEeceEEecCCCcccCCCCceEEEecccc------EEEec
Q 006263 257 EIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATS------TVDLC 314 (653)
Q Consensus 257 ~I~at~f~~~~~kf~~~l~eG~vy~is~~~V~~a~~~f~~~~~~yei~f~~~T------~I~~~ 314 (653)
.|++++|.+.+.--.+.|.+|+++.|.|.++|.... ...|-.+..++ .|..+
T Consensus 66 tlqVtlwd~ha~~ar~~lk~Gd~v~L~Nv~iK~~~~------g~LEG~l~~dr~~~~ki~v~~l 123 (143)
T 4hik_A 66 SIRCILWDEHDFYCRNYIKEGDYVVMKNVRTKIDHL------GYLECILHGDSAKRYNMSIEKV 123 (143)
T ss_dssp CEEEEECHHHHHHHTTTCCTTCEEEEEEEEEEECTT------SCEEEEECCCTTCCSCCEEEEE
T ss_pred EEEEEEECcHHHHHHhhCCCCCEEEEEeEEEeecCC------ceEEEEEcCCCCCCCcceEEEc
Confidence 788999999888777889999999999999998762 25777776665 56655
No 76
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=70.17 E-value=12 Score=37.38 Aligned_cols=75 Identities=9% Similarity=0.174 Sum_probs=49.3
Q ss_pred EEEEEEeCCC-eEEEEEechhhhhhhCCCHHHHHHHhhccCChhHHHHHHHHhcCceEEEEEEEeeeccCceeeEEEEEE
Q 006263 551 LQAQIQDQTG-LTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVI 629 (653)
Q Consensus 551 l~~~i~D~Tg-~~~~~~F~~~ae~llG~sA~el~~~~~e~~d~~~~~~~~~~~~~k~~~f~v~~k~~~y~~e~r~~~~v~ 629 (653)
+.+.|.|.|| .+.+.+|.+..+. . .+.. . +-.--.++|..+...|++. ....+.
T Consensus 90 ~~~~L~D~TG~~I~~k~W~~~~~~------------~---~~~~-------~-~~~G~yVrV~G~v~~f~g~--~qi~i~ 144 (270)
T 2pi2_A 90 IVYKIDDMTAAPMDVRQWVDTDDT------------S---SENT-------V-VPPETYVKVAGHLRSFQNK--KSLVAF 144 (270)
T ss_dssp EEEEEECSSSSCEEEEEECC----------------------CC-------C-CCTTCEEEEEEEEEEETTE--EEEEEE
T ss_pred EEEEEECCCCCEEEEEEEcCcCcc------------c---chhh-------c-CCCCCEEEEEEEEEecCCe--eEEEEE
Confidence 5789999999 8999999874320 0 0000 0 1111256777788899974 456666
Q ss_pred EeecC-ChHHHHHHHHHHHHhh
Q 006263 630 RADQV-NYSSESRYLLDLISKS 650 (653)
Q Consensus 630 ~~~~v-d~~~e~~~ll~~i~~~ 650 (653)
++.|+ |+.+...++|+.|...
T Consensus 145 ~ir~v~d~nEi~~H~Le~i~~h 166 (270)
T 2pi2_A 145 KIMPLEDMNEFTTHILEVINAH 166 (270)
T ss_dssp EEEECSCTHHHHHHHHHHHHHH
T ss_pred EEEecCCHhHHHHHHHHHHHHH
Confidence 77777 5888889999988643
No 77
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=69.88 E-value=15 Score=39.26 Aligned_cols=82 Identities=11% Similarity=0.066 Sum_probs=59.2
Q ss_pred ccccCCC-CCceEEEEEEEeeccccccccCCCCceeEEEEEEeCCCCeEEEEEchhHHHHHHhhcc-cCcEEEEeceEEe
Q 006263 211 IAALNPY-QGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIE-VGRVYLISKGSLK 288 (653)
Q Consensus 211 I~~L~p~-~~~w~I~~RV~~k~~ir~~~~~~g~gk~f~~~L~D~~g~~I~at~f~~~~~kf~~~l~-eG~vy~is~~~V~ 288 (653)
|.+|... ....+|+|||.++ |. .|++.-++|.| .+|.||+++-. ..|. .|+++.+.+.-++
T Consensus 5 ~~~l~~~~~~~V~v~Gwv~~~---R~------~g~~~F~~lrD-~~g~iQ~v~~~-------~~l~~~~~~v~v~G~v~~ 67 (422)
T 1n9w_A 5 VRDLKAHVGQEVELLGFLHWR---RD------LGRIQFLLLRD-RSGVVQVVTGG-------LKLPLPESALRVRGLVVE 67 (422)
T ss_dssp GGGGGGCTTSEEEEEEEEEEE---EE------CSSEEEEEEEE-TTEEEEEEEES-------CCCCCTTCEEEEEEEEEE
T ss_pred HHHHHhcCCCEEEEEEEEEEE---ec------CCCeEEEEEEE-CCEEEEEEEEc-------cccCCCCCEEEEEEEEEe
Confidence 4455422 3468999999875 33 25777789999 67889999854 5688 9999999986554
Q ss_pred cCCCcccCCCCceEEEeccccEEEec
Q 006263 289 PAQKNFNHLKNEWEIFLEATSTVDLC 314 (653)
Q Consensus 289 ~a~~~f~~~~~~yei~f~~~T~I~~~ 314 (653)
... ....+||..++-..+..+
T Consensus 68 ~~~-----~~~~~el~~~~~~vl~~~ 88 (422)
T 1n9w_A 68 NAK-----APGGLEVQAKEVEVLSPA 88 (422)
T ss_dssp CTT-----STTSEEEEEEEEEEEECC
T ss_pred cCC-----CCccEEEEEeEEEEeccC
Confidence 432 235799999887777665
No 78
>3k81_C MP18 RNA editing complex protein; krepa6, single domain antibody, immune system, RNA BIND protein; 3.40A {Trypanosoma brucei}
Probab=68.05 E-value=7.8 Score=35.77 Aligned_cols=63 Identities=14% Similarity=0.181 Sum_probs=49.8
Q ss_pred CCCceEEEEEEEeeccccccccCCCCceeEEEEEE------eCC-------CCeEEEEEchhH-HHHHHhhcccCcEEEE
Q 006263 217 YQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL------DSD-------GGEIRVTCFNAV-VDRFYEIIEVGRVYLI 282 (653)
Q Consensus 217 ~~~~w~I~~RV~~k~~ir~~~~~~g~gk~f~~~L~------D~~-------g~~I~at~f~~~-~~kf~~~l~eG~vy~i 282 (653)
..|+..+.||+.+--++|... ..+.+|.|+ |.+ .+-|++++|+.. ++.....|+.|+-++|
T Consensus 21 smNkViLiGrLg~DPElR~t~-----~~Va~fsLAt~~r~~~~~~ge~~~~Tdw~~Vv~wgk~lAE~~~~yL~KGs~V~V 95 (164)
T 3k81_C 21 SVNSVTLVGVVHDIQSGFVYE-----DAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAEVKQKVKEGNVVCV 95 (164)
T ss_dssp CEEEEEEEEEEECCCCEESSS-----CEECCEEEEECCC--------CCCCCEEEEEEECCHHHHHHHHHHCCTTCEEEE
T ss_pred CCcEEEEEEEeccCCEEEEcC-----ccEEEEEEEEcCceeeCCCCcCccceEEEEEEEECCHHHHHHHhhcCCCCEEEE
Confidence 457899999999999999754 356666654 222 345999999999 9999999999999998
Q ss_pred ec
Q 006263 283 SK 284 (653)
Q Consensus 283 s~ 284 (653)
.+
T Consensus 96 eG 97 (164)
T 3k81_C 96 NG 97 (164)
T ss_dssp CC
T ss_pred EE
Confidence 86
No 79
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=68.02 E-value=15 Score=40.32 Aligned_cols=79 Identities=19% Similarity=0.156 Sum_probs=57.0
Q ss_pred CceEEEEEEEeeccccccccCCCCceeEEEEEEeCCCCeEEEEEchhHHH----HHHhhcccCcEEEEeceEEecCCCcc
Q 006263 219 GRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVD----RFYEIIEVGRVYLISKGSLKPAQKNF 294 (653)
Q Consensus 219 ~~w~I~~RV~~k~~ir~~~~~~g~gk~f~~~L~D~~g~~I~at~f~~~~~----kf~~~l~eG~vy~is~~~V~~a~~~f 294 (653)
...+|.|||.++ |. .|++.-++|.| .+|.|++.+-.+.+. +....|..|+++.+.+.-++..
T Consensus 87 ~~V~v~GwV~~~---R~------~Gk~~Fi~LrD-~sg~iQvv~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t~---- 152 (529)
T 4ex5_A 87 LEVAIAGRMMLK---RV------MGKASFATVQD-GSGQIQFFVTPADVGAETYDAFKKWDLGDIVAARGVLFRTN---- 152 (529)
T ss_dssp CEEEEEEEEEEE---EE------ETTEEEEEEEC-SSCEEEEEECHHHHCHHHHHHHHTCCTTCEEEEEEEEEECT----
T ss_pred cEEEEEEEEEee---ec------CCCeEEEEEEe-CCeeEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEEcC----
Confidence 358899999885 33 25777788999 678999999765431 2334599999999987655432
Q ss_pred cCCCCceEEEeccccEEEec
Q 006263 295 NHLKNEWEIFLEATSTVDLC 314 (653)
Q Consensus 295 ~~~~~~yei~f~~~T~I~~~ 314 (653)
...+||...+-+.+..|
T Consensus 153 ---~gelel~~~~i~vLs~a 169 (529)
T 4ex5_A 153 ---KGELSVKCTQLRLLAKA 169 (529)
T ss_dssp ---TSCEEEEEEEEEEEECC
T ss_pred ---CCcEEEEEEEEEEEecC
Confidence 24799988777666665
No 80
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=66.73 E-value=19 Score=40.20 Aligned_cols=86 Identities=16% Similarity=0.080 Sum_probs=60.0
Q ss_pred CceEEEEEEEeeccccccccCCCCceeEEEEEEeCCCCeEEEEEchhH-HHHHHhhcccCcEEEEeceEEecCCCcccCC
Q 006263 219 GRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAV-VDRFYEIIEVGRVYLISKGSLKPAQKNFNHL 297 (653)
Q Consensus 219 ~~w~I~~RV~~k~~ir~~~~~~g~gk~f~~~L~D~~g~~I~at~f~~~-~~kf~~~l~eG~vy~is~~~V~~a~~~f~~~ 297 (653)
...+|+|||.++ |. -|++.-++|.| .+|.||+++-.+. .-++...|..|+++.+.+.-++.....-+..
T Consensus 17 ~~V~l~GwV~~~---R~------~G~~~Fi~LrD-~~g~iQvv~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~~~~ 86 (580)
T 1l0w_A 17 EEVVLEGWVNRR---RD------LGGLIFLDLRD-REGLVQLVAHPASPAYATAERVRPEWVVRAKGLVRLRPEPNPRLA 86 (580)
T ss_dssp CEEEEEEEEEEE---EE------CSSCEEEEEEE-TTEEEEEEECTTSTTHHHHTTCCTTCEEEEEEEEEECSSCCTTST
T ss_pred CEEEEEEEEEEE---ec------CCCeEEEEEEE-CCeeEEEEEeCChhHHHHHhcCCCCcEEEEEEEEEcCCCcCccCC
Confidence 468999999875 33 25777789999 6789999986542 1123356999999999986554432111223
Q ss_pred CCceEEEeccccEEEec
Q 006263 298 KNEWEIFLEATSTVDLC 314 (653)
Q Consensus 298 ~~~yei~f~~~T~I~~~ 314 (653)
..++||..++-..+..+
T Consensus 87 ~ge~Ei~~~~i~vl~~a 103 (580)
T 1l0w_A 87 TGRVEVELSALEVLAEA 103 (580)
T ss_dssp TTTEEEEEEEEEEEECC
T ss_pred CccEEEEEeEEEEeccC
Confidence 46799999887777766
No 81
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=66.44 E-value=15 Score=39.32 Aligned_cols=93 Identities=17% Similarity=0.167 Sum_probs=59.7
Q ss_pred eccccCCCC-CceEEEEEEEeeccccccccCCCCceeEEEEEEeCCCCeEEEEEchhHHHHHH-hhcccCcEEEEeceEE
Q 006263 210 PIAALNPYQ-GRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFY-EIIEVGRVYLISKGSL 287 (653)
Q Consensus 210 pI~~L~p~~-~~w~I~~RV~~k~~ir~~~~~~g~gk~f~~~L~D~~g~~I~at~f~~~~~kf~-~~l~eG~vy~is~~~V 287 (653)
.|++|.... ...+|+|||.++ |.. | +++.-++|.| .+|.||+++-.+..+.|. ..|..|+++.+.+.-+
T Consensus 2 ~i~~~~~~~~~~V~v~Gwv~~~---R~~----G-k~~~Fi~LrD-~~g~iQvv~~~~~~~~~~~~~l~~~~~v~v~G~v~ 72 (435)
T 2xgt_A 2 KIRDLVKHRNERVCIKGWIHRM---RRQ----G-KSLMFFILRD-GTGFLQVLLMDKLCQTYDALTVNTECTVEIYGAIK 72 (435)
T ss_dssp CGGGGGGGTTSEEEEEEEEEEE---EEC----T-TSEEEEEEEC-SSCEEEEEEEGGGGSSHHHHHCCTTCEEEEEEEEE
T ss_pred chhhhhhcCCCEEEEEEEEEEe---ccc----C-CCcEEEEEEE-CCceEEEEECCcchhHHHHhcCCCCCEEEEEEEEE
Confidence 356665443 368999999875 332 1 2567789999 678999998654322221 1589999999998655
Q ss_pred ecCCCcccCCCCceEEEeccccEEEe
Q 006263 288 KPAQKNFNHLKNEWEIFLEATSTVDL 313 (653)
Q Consensus 288 ~~a~~~f~~~~~~yei~f~~~T~I~~ 313 (653)
+...+. .....+||....-..+..
T Consensus 73 ~~~~~~--~~~g~~El~~~~~~vl~~ 96 (435)
T 2xgt_A 73 EVPEGK--EAPNGHELIADFWKIIGN 96 (435)
T ss_dssp ECC--------TTEEEEEEEEEEEEC
T ss_pred ecCCCc--CCCCcEEEEEEEEEEeec
Confidence 433221 234679999887766664
No 82
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=66.01 E-value=7.9 Score=35.98 Aligned_cols=65 Identities=12% Similarity=0.181 Sum_probs=50.3
Q ss_pred CCceEEEEEEEeeccccccccCCCCceeEEEEEE------eC-------CCCeEEEEEchh-HHHHHHhhcccCcEEEEe
Q 006263 218 QGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL------DS-------DGGEIRVTCFNA-VVDRFYEIIEVGRVYLIS 283 (653)
Q Consensus 218 ~~~w~I~~RV~~k~~ir~~~~~~g~gk~f~~~L~------D~-------~g~~I~at~f~~-~~~kf~~~l~eG~vy~is 283 (653)
+++.+|.|||.+.-.+|...+ | ..+.+|.|+ |+ +..-|++++|+. .++.+...|+.|+.++|.
T Consensus 23 mNkV~LiGrL~~DPelr~t~~--G-~~v~~FslAv~~~~~~~~~Ge~~~~t~~i~vv~wg~~lAe~~~~~l~KG~~V~Ve 99 (169)
T 3lgj_A 23 LNKVMLIGYLGDDPESKTMTS--G-AEVVNFRMATFESYMNKNTHQKVEKTEWHSVVVFNPHFAKIALQYLHKGSKVYIE 99 (169)
T ss_dssp EEEEEEEEEESSCCEEEECTT--S-CEEEEEEEEEEC------------CEEEEEEEECCHHHHHHHHHHCCTTCEEEEE
T ss_pred eeEEEEEEEECCCCeEEECCC--C-CEEEEEEEEEcCceecccCCccccccEEEEEEEeCHHHHHHHHHhCCCCCEEEEE
Confidence 478999999999999987643 2 256666653 22 234689999999 999999999999999998
Q ss_pred ce
Q 006263 284 KG 285 (653)
Q Consensus 284 ~~ 285 (653)
+-
T Consensus 100 Gr 101 (169)
T 3lgj_A 100 GK 101 (169)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 83
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A
Probab=63.47 E-value=8 Score=34.23 Aligned_cols=66 Identities=21% Similarity=0.254 Sum_probs=48.8
Q ss_pred CCCceEEEEEEEeeccccccccCCCCceeEEEEEE------eC------CC------CeEEEEEchh-HHHHHHhhcccC
Q 006263 217 YQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL------DS------DG------GEIRVTCFNA-VVDRFYEIIEVG 277 (653)
Q Consensus 217 ~~~~w~I~~RV~~k~~ir~~~~~~g~gk~f~~~L~------D~------~g------~~I~at~f~~-~~~kf~~~l~eG 277 (653)
.+++.+|.|||.+--.+|...+ | ..+.+|.|+ |. +| .-+++++|++ .++.....|..|
T Consensus 13 ~mN~V~L~GrL~~dPelr~t~~--G-~~v~~f~lA~~~~~~~~~g~~~~~g~~~~~t~w~~v~~wg~~~Ae~~~~~l~KG 89 (132)
T 3ull_A 13 SLNRVHLLGRVGQDPVLRQVEG--K-NPVTIFSLATNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKG 89 (132)
T ss_dssp CEEEEEEEEEECSCCEEECCTT--S-CCEEEEEEEEEEEECC---------CCEEEEEEEEEEECSTTHHHHHHHHCCTT
T ss_pred cCcEEEEEEEECCCCEEEECCC--C-CEEEEEEEEEecceeccccccccCCceecceEEEEEEEEchHHHHHHHhhCCCC
Confidence 3578999999999999887643 2 256666553 21 12 3478889995 999999999999
Q ss_pred cEEEEece
Q 006263 278 RVYLISKG 285 (653)
Q Consensus 278 ~vy~is~~ 285 (653)
+-++|.+.
T Consensus 90 ~~V~V~G~ 97 (132)
T 3ull_A 90 SRIYLEGK 97 (132)
T ss_dssp CEEEEEEE
T ss_pred CEEEEEEE
Confidence 99999864
No 84
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=63.44 E-value=11 Score=38.46 Aligned_cols=65 Identities=20% Similarity=0.287 Sum_probs=50.8
Q ss_pred CCCceEEEEEEEeeccccccccCCCCceeEEEEEE------eCCC------CeEEEEEchhHHHHHHhhcccCcEEEEec
Q 006263 217 YQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL------DSDG------GEIRVTCFNAVVDRFYEIIEVGRVYLISK 284 (653)
Q Consensus 217 ~~~~w~I~~RV~~k~~ir~~~~~~g~gk~f~~~L~------D~~g------~~I~at~f~~~~~kf~~~l~eG~vy~is~ 284 (653)
.+++.+|.+||.+--.+|...+ | ..+.+|.|. |++| .-|++++|+..++.+.. |+.|+.+.|.+
T Consensus 128 mmN~V~L~GrL~~dPelr~t~~--G-~~v~~f~lAv~~~~~d~~Ge~~~~t~~i~vvawg~~Ae~~~~-l~KG~~V~V~G 203 (301)
T 1se8_A 128 AMNEVLVLGNVTRDPEIRYTPA--G-DAVLSLSIAVNENYQDRQGQRQEKVHYIDATLWRDLAENMKE-LRKGDPVMIMG 203 (301)
T ss_dssp CEEEEEEEEEECSCCEEEECTT--C-CEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHHHHTT-CCTTCEEEEEE
T ss_pred ceeEEEEEEEECcCCEEEECCC--C-CEEEEEEEEEcCceEcCCCCcccccEEEEEEECCHHHHHHHh-cCCCCEEEEEE
Confidence 3578999999999988887643 2 256666654 4333 25999999999999999 99999999997
Q ss_pred e
Q 006263 285 G 285 (653)
Q Consensus 285 ~ 285 (653)
.
T Consensus 204 r 204 (301)
T 1se8_A 204 R 204 (301)
T ss_dssp E
T ss_pred E
Confidence 4
No 85
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=62.77 E-value=3.6 Score=32.69 Aligned_cols=33 Identities=27% Similarity=0.713 Sum_probs=23.4
Q ss_pred cCCCCcCcccccc-eeeecCc-eeecccCccccCCceEEEE
Q 006263 512 ACPLMIGDRQCNK-KVTQSGN-RWQCDRCNQEIDECDYRYL 550 (653)
Q Consensus 512 aC~~~~~~~~C~K-Kv~~~~~-~~~C~kC~~~~~~~~~rY~ 550 (653)
-|| .|+| +|..... .|.|.+|++.+.--.|.+.
T Consensus 29 ~C~------fCgk~~vkR~a~GIW~C~~C~~~~AGGAy~~~ 63 (73)
T 1ffk_W 29 KCP------VCGFPKLKRASTSIWVCGHCGYKIAGGAYTPE 63 (73)
T ss_pred cCC------CCCCceeEEEEeEEEECCCCCcEEECCCcccc
Confidence 589 9998 6654443 8999999998654444443
No 86
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=62.49 E-value=33 Score=29.22 Aligned_cols=71 Identities=6% Similarity=0.086 Sum_probs=39.2
Q ss_pred ccccEEEEEEEecCceeEEecCC-ceeeEEEEEEEeCC------CCEEEEEEccchhhhhhhhHHHhhccCCCcEEEEEe
Q 006263 341 SIVDVIGIVISVNPSVPILRKNG-METQRRILNLKDTS------GRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKS 413 (653)
Q Consensus 341 ~~vDVIGvV~~v~~~~~i~~k~g-~~~~kr~i~l~D~s------~~~i~vtLWg~~A~~~~~~l~~~~~~~~~~Vvaik~ 413 (653)
..|-++|.+..=-++.. +.+| ..+. .|.|.=.+ -.-+.|++||+.|+...++ + ..|.-|++.|
T Consensus 12 ~~v~LiGrL~~DPelR~--t~~g~~~va--~f~lAv~~~~~~~~t~fi~vv~wgk~AE~~~~y----l--~KG~~V~VeG 81 (108)
T 3koj_A 12 NSCILQATVVEAPQLRY--AQDNQTPVA--EMVVQFPGLSSKDAPARLKVVGWGAVAQELQDR----C--RLNDEVVLEG 81 (108)
T ss_dssp EEEEEEEEEEEEEEEEE--CTTSSSEEE--EEEEEECC-----CCEEEEEEEETHHHHHHHHH----C--CTTCEEEEEE
T ss_pred ceEEEEEEECCCCEEEE--eCCCCEEEE--EEEEEECCcccCCCcEEEEEEEEhHHHHHHHHh----C--CCCCEEEEEE
Confidence 35677888876544432 2344 4433 34443221 1259999999999875333 2 3566666654
Q ss_pred -eEeecCCC
Q 006263 414 -GKVNDFSG 421 (653)
Q Consensus 414 -~rV~~f~G 421 (653)
.+.+.|..
T Consensus 82 rL~~r~y~~ 90 (108)
T 3koj_A 82 RLRINSLLK 90 (108)
T ss_dssp EEEEEC---
T ss_pred EEEeeeEEC
Confidence 46666743
No 87
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=61.62 E-value=27 Score=38.03 Aligned_cols=79 Identities=19% Similarity=0.216 Sum_probs=57.3
Q ss_pred CceEEEEEEEeeccccccccCCCCceeEEEEEEeCCCCeEEEEEchhHHH----HHHhhcccCcEEEEeceEEecCCCcc
Q 006263 219 GRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVD----RFYEIIEVGRVYLISKGSLKPAQKNF 294 (653)
Q Consensus 219 ~~w~I~~RV~~k~~ir~~~~~~g~gk~f~~~L~D~~g~~I~at~f~~~~~----kf~~~l~eG~vy~is~~~V~~a~~~f 294 (653)
...+|.|||.++ |. .|++.-++|.| .+|.||+++-.+.+. +....|..|+++.+.+.-++..
T Consensus 57 ~~V~v~Gwv~~~---R~------~gk~~F~~LrD-~sg~iQvv~~~~~~~~~~~~~~~~l~~g~~v~V~G~v~~~~---- 122 (493)
T 3a74_A 57 IEVAVAGRIMTK---RG------MGKAGFAHIQD-VTGQIQIYVRQDDVGEQQYELFKISDLGDIVGVRGTMFKTK---- 122 (493)
T ss_dssp CEEEEEEEEEEE---EE------ETTEEEEEEEE-TTEEEEEEEEHHHHHHHHHHHHHHCCTTCEEEEEEEEEECT----
T ss_pred CEEEEEEEEEEE---ec------CCCcEEEEEEE-CCEeEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEeCC----
Confidence 368999999875 33 25777789999 677999999655321 1225699999999998755542
Q ss_pred cCCCCceEEEeccccEEEec
Q 006263 295 NHLKNEWEIFLEATSTVDLC 314 (653)
Q Consensus 295 ~~~~~~yei~f~~~T~I~~~ 314 (653)
...+||..++-+.+..+
T Consensus 123 ---~ge~ei~~~~i~vl~~~ 139 (493)
T 3a74_A 123 ---VGELSIKVSSYEFLTKA 139 (493)
T ss_dssp ---TCCEEEEEEEEEEEECC
T ss_pred ---CCcEEEEEEEEEEcccc
Confidence 14789998887777665
No 88
>3k7u_C MP18 RNA editing complex protein; OB-fold, RNA-editing proteins, kinetoplastids, system, RNA binding protein; 2.10A {Trypanosoma brucei} PDB: 3k80_D 3stb_D
Probab=59.05 E-value=29 Score=31.39 Aligned_cols=63 Identities=13% Similarity=0.164 Sum_probs=48.7
Q ss_pred CCCceEEEEEEEeeccccccccCCCCceeEEEEEE------eC-------CCCeEEEEEchhH-HHHHHhhcccCcEEEE
Q 006263 217 YQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL------DS-------DGGEIRVTCFNAV-VDRFYEIIEVGRVYLI 282 (653)
Q Consensus 217 ~~~~w~I~~RV~~k~~ir~~~~~~g~gk~f~~~L~------D~-------~g~~I~at~f~~~-~~kf~~~l~eG~vy~i 282 (653)
..++.+|.+||.+--. |.. + | ..+.+|.|+ |+ +.+-|++++|+.. ++.....|+.|+-++|
T Consensus 5 ~~NkV~LiGrLg~DPe-r~t-~--G-~~va~FslAv~~~~~~~~Ge~~~~~t~w~~vv~wgk~lAe~~~~yl~KG~~V~V 79 (148)
T 3k7u_C 5 SVNSVTLVGVVHDIQS-GFV-Y--E-DAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAEVKQKVKEGNVVCV 79 (148)
T ss_dssp CCCCEEEEEEEEEEEE-EES-S--S-SEEEEEEEEEECC-----------CEEEEEEEEESHHHHHHHHHHCCTTCEEEE
T ss_pred cCcEEEEEEEeccCCE-eee-C--C-cEEEEEEEEECCceecCCCCEEccccEEEEEEEECcHHHHHHHhhCCCCCEEEE
Confidence 3578999999999888 754 3 2 367777664 21 2347899999997 9999999999999998
Q ss_pred ec
Q 006263 283 SK 284 (653)
Q Consensus 283 s~ 284 (653)
.+
T Consensus 80 eG 81 (148)
T 3k7u_C 80 NG 81 (148)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 89
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=58.61 E-value=4.1 Score=35.22 Aligned_cols=25 Identities=40% Similarity=1.186 Sum_probs=19.3
Q ss_pred cCCCCcCcccccc-eeeecCc-eeecccCcccc
Q 006263 512 ACPLMIGDRQCNK-KVTQSGN-RWQCDRCNQEI 542 (653)
Q Consensus 512 aC~~~~~~~~C~K-Kv~~~~~-~~~C~kC~~~~ 542 (653)
-|| .|+| +|..... .|.|.+|++.+
T Consensus 62 tCP------fCGk~~vKR~avGIW~C~~Cgk~f 88 (116)
T 3cc2_Z 62 ACP------NCGEDRVDRQGTGIWQCSYCDYKF 88 (116)
T ss_dssp ECS------SSCCEEEEEEETTEEEETTTCCEE
T ss_pred cCC------CCCCceeEecCceeEECCCCCCEE
Confidence 599 9998 5544433 99999999875
No 90
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=57.73 E-value=37 Score=35.84 Aligned_cols=68 Identities=16% Similarity=0.314 Sum_probs=51.4
Q ss_pred eeccccCCCCCceEEEEEEEeeccccccccCCCCceeEEEEEEeCCCCeEEEEEch--hHHHHHHhhcccCcEEEEece
Q 006263 209 IPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFN--AVVDRFYEIIEVGRVYLISKG 285 (653)
Q Consensus 209 ~pI~~L~p~~~~w~I~~RV~~k~~ir~~~~~~g~gk~f~~~L~D~~g~~I~at~f~--~~~~kf~~~l~eG~vy~is~~ 285 (653)
.+|.++.||+ ...|++.|..+-. .- +|--.-|.|.| ++++|+|.+|. ....+.-..|..|+.+.+.+.
T Consensus 276 ~~i~~~~~~~-~~~v~G~V~~~P~--~~-----~GGHV~f~l~d-~~~~i~c~ayeptk~fr~~vr~L~~GD~V~v~G~ 345 (402)
T 3au7_A 276 EEVHRLENYR-SYRLRGRVTLEPY--DI-----EGGHVFFEIDT-KFGSVKCAAFEPTKQFRNVIRLLRKGDVVEVYGS 345 (402)
T ss_dssp GGCSSCCTTC-EEEEEEEEEEEEE--EE-----TTTEEEEEEEE-TTEEEEEEECGGGTTHHHHHTTCCTTCEEEEEEE
T ss_pred ccccccccCc-eEEEEEEEecCcE--ec-----cCceEEEEEEc-CCCEEEEEEEccchHHHHHHhcCCCCCEEEEEEe
Confidence 3489999997 4778999987622 11 23334578889 69999999999 446777788999999988876
No 91
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=56.75 E-value=32 Score=37.59 Aligned_cols=79 Identities=16% Similarity=0.182 Sum_probs=57.4
Q ss_pred CceEEEEEEEeeccccccccCCCCceeEEEEEEeCCCCeEEEEEchhH-----HHHHHhhcccCcEEEEeceEEecCCCc
Q 006263 219 GRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAV-----VDRFYEIIEVGRVYLISKGSLKPAQKN 293 (653)
Q Consensus 219 ~~w~I~~RV~~k~~ir~~~~~~g~gk~f~~~L~D~~g~~I~at~f~~~-----~~kf~~~l~eG~vy~is~~~V~~a~~~ 293 (653)
...+|.|||.++ |. .|++.-++|.| .+|.|++++-.+. .++....|..|+++.+.+.-++...
T Consensus 65 ~~V~v~Gwv~~~---R~------~gk~~F~~LrD-~sg~iQvv~~~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~-- 132 (504)
T 1e1o_A 65 IEVSVAGRMMTR---RI------MGKASFVTLQD-VGGRIQLYVARDSLPEGVYNDQFKKWDLGDIIGARGTLFKTQT-- 132 (504)
T ss_dssp CEEEEEEEEEEE---EE------ETTEEEEEEEE-TTEEEEEEEETTTSSTTHHHHTGGGCCTTCEEEEEEEEEECTT--
T ss_pred CEEEEEEEEEEE---ec------CCCcEEEEEEE-CCeeEEEEEECCcCCHHHHHHHHhcCCCCCEEEEEEEEEecCC--
Confidence 358999999875 33 25777789999 6779999986542 2313367999999999987655422
Q ss_pred ccCCCCceEEEeccccEEEec
Q 006263 294 FNHLKNEWEIFLEATSTVDLC 314 (653)
Q Consensus 294 f~~~~~~yei~f~~~T~I~~~ 314 (653)
..+||..++-..+..|
T Consensus 133 -----ge~ei~~~~i~vl~~a 148 (504)
T 1e1o_A 133 -----GELSIHCTELRLLTKA 148 (504)
T ss_dssp -----CCEEEEEEEEEEEECC
T ss_pred -----ceEEEEEEEEEEeccc
Confidence 4789998887777665
No 92
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}
Probab=55.39 E-value=89 Score=26.19 Aligned_cols=71 Identities=13% Similarity=0.013 Sum_probs=40.0
Q ss_pred ccEEEEEEEecCceeEEecCCceeeEEEEEEEe-----CCC------CEEEEEEccchhhhhhhhHHHhhccCCCcEEEE
Q 006263 343 VDVIGIVISVNPSVPILRKNGMETQRRILNLKD-----TSG------RSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSV 411 (653)
Q Consensus 343 vDVIGvV~~v~~~~~i~~k~g~~~~kr~i~l~D-----~s~------~~i~vtLWg~~A~~~~~~l~~~~~~~~~~Vvai 411 (653)
|-++|.++.--++.. +.+|..+ ..|+|.- +.| ..|.|++||+.|+.. + .+ ..|..|.+
T Consensus 5 v~L~GrLt~dPelRy--TpsG~~V--~~f~LA~~s~~~e~g~~r~~~f~i~vv~wGk~AE~~----~-~~--~kGs~V~V 73 (101)
T 3en2_A 5 LQLVATLVEREVMRY--TPAGVPI--VNCLLSYSGQAMEAQAARQVEFSIEALGAGKMASVL----D-RI--APGTVLEC 73 (101)
T ss_dssp EEEEEEEEEECCCEE--CTTCCEE--EEEEEEEEEEEECC--EEEEEEEEEEEEETHHHHHH----T-TS--CTTCEEEE
T ss_pred EEEEEEECcCccEEE--CCCCCEE--EEEEEEEcceEecCCCcEeeeEEEEEEEEhHHHHHH----h-hc--CCCCEEEE
Confidence 557888888777653 2356543 3333322 222 138999999998863 2 23 36788887
Q ss_pred Eee-EeecCCCcee
Q 006263 412 KSG-KVNDFSGKSI 424 (653)
Q Consensus 412 k~~-rV~~f~G~sL 424 (653)
.|- ..+.|+++.|
T Consensus 74 eGrL~trs~~s~~l 87 (101)
T 3en2_A 74 VGFLARKHRSSKAL 87 (101)
T ss_dssp EEEEEECC----CE
T ss_pred EEEEEeCcCCCCee
Confidence 755 4456776543
No 93
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=54.37 E-value=5 Score=32.73 Aligned_cols=25 Identities=32% Similarity=0.969 Sum_probs=18.8
Q ss_pred cCCCCcCcccccceeeec--CceeecccCcccc
Q 006263 512 ACPLMIGDRQCNKKVTQS--GNRWQCDRCNQEI 542 (653)
Q Consensus 512 aC~~~~~~~~C~KKv~~~--~~~~~C~kC~~~~ 542 (653)
-|| .|++..... .+.|.|+.|+..+
T Consensus 29 ~Cp------~CG~~~v~r~atGiW~C~~Cg~~~ 55 (83)
T 1vq8_Z 29 ACP------NCGEDRVDRQGTGIWQCSYCDYKF 55 (83)
T ss_dssp ECS------SSCCEEEEEEETTEEEETTTCCEE
T ss_pred cCC------CCCCcceeccCCCeEECCCCCCEe
Confidence 699 999855432 2389999999865
No 94
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=51.20 E-value=46 Score=30.31 Aligned_cols=71 Identities=13% Similarity=0.142 Sum_probs=38.7
Q ss_pred cccEEEEEEEecCceeEEecCCceeeEEEEEE----EeC-CCC------EEEEEEccchhhhhhhhHHHhhccCCCcEEE
Q 006263 342 IVDVIGIVISVNPSVPILRKNGMETQRRILNL----KDT-SGR------SVELTLWGDFCNKEGQKLQEMVDVGFFPVLS 410 (653)
Q Consensus 342 ~vDVIGvV~~v~~~~~i~~k~g~~~~kr~i~l----~D~-s~~------~i~vtLWg~~A~~~~~~l~~~~~~~~~~Vva 410 (653)
.|-++|.|..--++. .+.+|+.+.+-.|-. .|. +|. -+.|++||+.|+...++ + ..+..|.
T Consensus 10 ~V~LiGrL~~dPelr--~t~~G~~v~~f~lA~~~~~~d~~~Ge~~e~t~~i~vv~wg~~Ae~~~~~----l--~KG~~V~ 81 (158)
T 3tqy_A 10 KVILIGNLGQDPEVR--YTPNGNAVANVTLATSTTWRDKQTGELQERTEWHRIAFFNRLAEIVGEY----L--RKGSKIY 81 (158)
T ss_dssp EEEEEEEESSSCEEE--ECTTCCEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEEETHHHHHHHHH----C--CTTCEEE
T ss_pred EEEEEEEECCCCEEE--ECCCCCEEEEEEEEEcCceeccCCCCEeeeeEEEEEEEEhHHHHHHHhh----c--CCCCEEE
Confidence 366777776533332 234565543333322 233 342 47999999998764322 2 3466666
Q ss_pred EEe-eEeecCC
Q 006263 411 VKS-GKVNDFS 420 (653)
Q Consensus 411 ik~-~rV~~f~ 420 (653)
+.| .+...|.
T Consensus 82 VeG~L~~~~~~ 92 (158)
T 3tqy_A 82 IEGSLRTRKWQ 92 (158)
T ss_dssp EEEEEEEEEEE
T ss_pred EEEEEEeeeEE
Confidence 654 4555663
No 95
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=50.96 E-value=9.2 Score=27.95 Aligned_cols=26 Identities=31% Similarity=1.050 Sum_probs=19.2
Q ss_pred EecCCCCcCcccccce--eeecCceeecccCccc
Q 006263 510 YTACPLMIGDRQCNKK--VTQSGNRWQCDRCNQE 541 (653)
Q Consensus 510 Y~aC~~~~~~~~C~KK--v~~~~~~~~C~kC~~~ 541 (653)
..-|| .|+.. +....+.++|.+|+-+
T Consensus 19 ~k~CP------~CG~~~fm~~~~~R~~C~kCG~t 46 (50)
T 3j20_Y 19 NKFCP------RCGPGVFMADHGDRWACGKCGYT 46 (50)
T ss_dssp SEECS------SSCSSCEEEECSSEEECSSSCCE
T ss_pred cccCC------CCCCceEEecCCCeEECCCCCCE
Confidence 44699 89884 4445559999999865
No 96
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=50.73 E-value=6.3 Score=32.64 Aligned_cols=26 Identities=31% Similarity=0.919 Sum_probs=18.9
Q ss_pred cCCCCcCcccccce-eeecC-ceeecccCccccC
Q 006263 512 ACPLMIGDRQCNKK-VTQSG-NRWQCDRCNQEID 543 (653)
Q Consensus 512 aC~~~~~~~~C~KK-v~~~~-~~~~C~kC~~~~~ 543 (653)
-|| .|+|. |.... +.|.|.+|++.+.
T Consensus 38 ~Cp------fCgk~~vkR~a~GIW~C~~C~~~~A 65 (92)
T 3izc_m 38 DCS------FCGKKTVKRGAAGIWTCSCCKKTVA 65 (92)
T ss_dssp CCS------SSCSSCCEEEETTEEECTTTCCEEE
T ss_pred cCC------CCCCceeeecccceEEcCCCCCEEe
Confidence 599 89874 44333 3899999998764
No 97
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=50.23 E-value=6.7 Score=30.99 Aligned_cols=27 Identities=30% Similarity=0.866 Sum_probs=19.7
Q ss_pred cCCCCcCcccccce-eeecCc-eeecccCccccCC
Q 006263 512 ACPLMIGDRQCNKK-VTQSGN-RWQCDRCNQEIDE 544 (653)
Q Consensus 512 aC~~~~~~~~C~KK-v~~~~~-~~~C~kC~~~~~~ 544 (653)
-|| .|+|. |..... .|.|.+|++.+..
T Consensus 28 ~C~------fCgk~~vkR~a~GIW~C~~C~~~~AG 56 (72)
T 3jyw_9 28 DCS------FCGKKTVKRGAAGIWTCSCCKKTVAG 56 (72)
T ss_dssp CCS------SCCSSCBSBCSSSCBCCSSSCCCCCC
T ss_pred cCC------CCCCceeEecCCCeEECCCCCCEEeC
Confidence 599 99875 433333 8999999987643
No 98
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=49.67 E-value=23 Score=35.19 Aligned_cols=64 Identities=16% Similarity=0.184 Sum_probs=50.1
Q ss_pred CCceEEEEEEEeeccccccccCCCCceeEEEEEE-eC--------CCCeEEEEEchhHHHHHHhhcccCcEEEEece
Q 006263 218 QGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL-DS--------DGGEIRVTCFNAVVDRFYEIIEVGRVYLISKG 285 (653)
Q Consensus 218 ~~~w~I~~RV~~k~~ir~~~~~~g~gk~f~~~L~-D~--------~g~~I~at~f~~~~~kf~~~l~eG~vy~is~~ 285 (653)
+++.+|.|||++--.+|...+ | ..+.+|.|+ +. +.+-|++++|+..++... .|+.|+.+.|.+-
T Consensus 128 ~N~v~l~G~l~~dpe~r~t~~--G-~~v~~f~lAv~~~~~g~~~~~t~~~~v~~wg~~Ae~~~-~l~KG~~V~V~G~ 200 (264)
T 2fxq_A 128 LNQVILMGNLTRDPDLRYTPQ--G-TAVVRLGLAVNERRRGQEEERTHFLEVQAWRELAEWAS-ELRKGDGLLVIGR 200 (264)
T ss_dssp CEEEEEEEEESSCCCCEECTT--C-CEEEEEEEEEECCC-------EEEEEEEEEHHHHHHHT-TCCTTCEEEEEEE
T ss_pred eEEEEEEEEECCCCEEEECCC--C-CEEEEEEEEEcCCcCCCCccccEEEEEEEEChHHHHhh-hcCCCCEEEEEEE
Confidence 478999999999988887643 2 256777764 21 234699999999999999 9999999999863
No 99
>1miu_A BRCA2, breast cancer type 2 susceptibility protein; tumor suppressor, breast cancer susceptibility, DNA-binding; 3.10A {Mus musculus} SCOP: a.170.1.1 a.171.1.1 b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1iyj_B 1mje_A
Probab=48.52 E-value=5.9 Score=45.00 Aligned_cols=67 Identities=19% Similarity=0.199 Sum_probs=47.3
Q ss_pred HHHHHhCCCC-CCCC-eEEEEEEEEcCC--------------CCceEEEEEecccceeeeeecccchhhcccCCcccCcE
Q 006263 9 SISLINGGDV-NSKP-LVQVMDIKLIGS--------------TQERYRFLISDSVSTQHAMLATQLNDRVKTGQVKKGSV 72 (653)
Q Consensus 9 ai~~i~~~~~-~~~p-vvQVl~ik~~~~--------------~~~ryr~~lSDG~~~~~~ml~t~ln~~v~~~~l~~~sI 72 (653)
+|.+|++++. ...| ||=|.+|...+. ....-.|.|+||=|.+.|.+...|..++..|.|..|.=
T Consensus 215 aLrrI~E~D~~as~~mVLcVs~I~~~~~~~~e~~~~~~~~~~~~~~~~leLTDGWY~IkA~lD~~L~~~l~~GkI~vGqK 294 (738)
T 1miu_A 215 ALKKILERDDTAAKTLVLCISDIISPSTKVSETSGGKTSGEDANKVDTIELTDGWYAVRAQLDPPLMALVKSGKLTVGQK 294 (738)
T ss_dssp HHHHHHTTSSCCBCSEECEECCC----------------------CCCCCEECSSCEECCCCCHHHHHHHHTTCSCSSCB
T ss_pred HHHHHHhcCCCcCCcEEEEEEEeecCCCccccccccccccccccccceEEEecCcEEEEEEeCHHHHHHHHcCCccCCce
Confidence 7889999886 3455 555555543210 11246899999999999999999999999999987765
Q ss_pred EEE
Q 006263 73 VQL 75 (653)
Q Consensus 73 Ikl 75 (653)
|.|
T Consensus 295 L~I 297 (738)
T 1miu_A 295 IIT 297 (738)
T ss_dssp CCC
T ss_pred EEE
Confidence 433
No 100
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=48.09 E-value=7.2 Score=30.61 Aligned_cols=26 Identities=19% Similarity=0.365 Sum_probs=20.7
Q ss_pred ecCCCCcCcccccceeeecC--ceeecccCcccc
Q 006263 511 TACPLMIGDRQCNKKVTQSG--NRWQCDRCNQEI 542 (653)
Q Consensus 511 ~aC~~~~~~~~C~KKv~~~~--~~~~C~kC~~~~ 542 (653)
.+|| .|+..+..+. +...|..|+..|
T Consensus 9 L~CP------~ck~~L~~~~~~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 9 LACP------ICKGPLKLSADKTELISKGAGLAY 36 (69)
T ss_dssp CCCT------TTCCCCEECTTSSEEEETTTTEEE
T ss_pred eeCC------CCCCcCeEeCCCCEEEcCCCCcEe
Confidence 4899 9999987543 488999998765
No 101
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=47.87 E-value=7.4 Score=30.60 Aligned_cols=27 Identities=15% Similarity=0.438 Sum_probs=21.4
Q ss_pred EecCCCCcCcccccceeeecC--ceeecccCcccc
Q 006263 510 YTACPLMIGDRQCNKKVTQSG--NRWQCDRCNQEI 542 (653)
Q Consensus 510 Y~aC~~~~~~~~C~KKv~~~~--~~~~C~kC~~~~ 542 (653)
..+|| .|+..+..+. +...|+.|+..|
T Consensus 8 iL~CP------~ck~~L~~~~~~~~LiC~~cg~~Y 36 (70)
T 2js4_A 8 ILVCP------VCKGRLEFQRAQAELVCNADRLAF 36 (70)
T ss_dssp CCBCT------TTCCBEEEETTTTEEEETTTTEEE
T ss_pred heECC------CCCCcCEEeCCCCEEEcCCCCcee
Confidence 45899 9999987553 388999998765
No 102
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=47.40 E-value=12 Score=26.95 Aligned_cols=26 Identities=23% Similarity=0.737 Sum_probs=20.2
Q ss_pred cCCCCcCcccccc-eeeecC--ceeecccCccccC
Q 006263 512 ACPLMIGDRQCNK-KVTQSG--NRWQCDRCNQEID 543 (653)
Q Consensus 512 aC~~~~~~~~C~K-Kv~~~~--~~~~C~kC~~~~~ 543 (653)
+|| .|+. .+..+. +.+.|..|+..++
T Consensus 7 ~CP------~C~~~~l~~d~~~gelvC~~CG~v~~ 35 (50)
T 1pft_A 7 VCP------ACESAELIYDPERGEIVCAKCGYVIE 35 (50)
T ss_dssp SCT------TTSCCCEEEETTTTEEEESSSCCBCC
T ss_pred eCc------CCCCcceEEcCCCCeEECcccCCccc
Confidence 799 9988 776543 3899999998664
No 103
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=47.36 E-value=7.3 Score=30.46 Aligned_cols=27 Identities=7% Similarity=0.180 Sum_probs=21.2
Q ss_pred EecCCCCcCcccccceeeecC--ceeecccCcccc
Q 006263 510 YTACPLMIGDRQCNKKVTQSG--NRWQCDRCNQEI 542 (653)
Q Consensus 510 Y~aC~~~~~~~~C~KKv~~~~--~~~~C~kC~~~~ 542 (653)
..+|| .|+..+..+. +...|+.|+..|
T Consensus 8 iL~CP------~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2jr6_A 8 ILVCP------VTKGRLEYHQDKQELWSRQAKLAY 36 (68)
T ss_dssp CCBCS------SSCCBCEEETTTTEEEETTTTEEE
T ss_pred heECC------CCCCcCeEeCCCCEEEcCCCCcEe
Confidence 45899 9999887543 488999998765
No 104
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=47.02 E-value=64 Score=30.61 Aligned_cols=73 Identities=10% Similarity=0.155 Sum_probs=38.4
Q ss_pred ccccEEEEEEEecCceeEEecCCceeeEEEEEEE----eC--------CCCEEEEEEccchhhhhhhhHHHhhccCCCcE
Q 006263 341 SIVDVIGIVISVNPSVPILRKNGMETQRRILNLK----DT--------SGRSVELTLWGDFCNKEGQKLQEMVDVGFFPV 408 (653)
Q Consensus 341 ~~vDVIGvV~~v~~~~~i~~k~g~~~~kr~i~l~----D~--------s~~~i~vtLWg~~A~~~~~~l~~~~~~~~~~V 408 (653)
..|-++|.|..--++. .+.+|+.+.+-.|-.- |. .-.-|+|++|++.|+.+.++ + ..+..
T Consensus 5 N~V~LiGrL~~DPElR--~T~~G~~Va~FsLAvn~R~~d~~~Ge~~d~~T~wi~VvawgklAE~v~~~----L--~KG~~ 76 (199)
T 3eiv_A 5 TVITVVGNLVDDPELR--FTPSGAAVAKFRVASTPRTFDRQTNEWKDGESLFLTCSVWRQAAENVAES----L--QRGMR 76 (199)
T ss_dssp CEEEEEEEESSCCEEE--ECTTCCEEEEEEEEECC-----------CCCCEEEEEEEETHHHHHHHHH----C--CTTCE
T ss_pred cEEEEEEEECCCCeEE--ECCCCCEEEEEEEEEcCcccccCCCcEecCccEEEEEEEEhHHHHHHHHh----c--CCCCE
Confidence 3567778777533332 2345655433333321 11 12258999999999774322 2 24566
Q ss_pred EEEE-eeEeecCCC
Q 006263 409 LSVK-SGKVNDFSG 421 (653)
Q Consensus 409 vaik-~~rV~~f~G 421 (653)
|.|. .++.+.|..
T Consensus 77 V~VeGrL~~rswed 90 (199)
T 3eiv_A 77 VIVQGRLKQRSYED 90 (199)
T ss_dssp EEEEEEEEEEC---
T ss_pred EEEEEEEEeeEEEC
Confidence 6655 556677753
No 105
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=46.78 E-value=7.5 Score=30.41 Aligned_cols=29 Identities=14% Similarity=0.361 Sum_probs=22.4
Q ss_pred eEEecCCCCcCcccccceeeecC--ceeecccCcccc
Q 006263 508 FCYTACPLMIGDRQCNKKVTQSG--NRWQCDRCNQEI 542 (653)
Q Consensus 508 ~~Y~aC~~~~~~~~C~KKv~~~~--~~~~C~kC~~~~ 542 (653)
+-..+|| .|+..+..+. +...|+.|+..|
T Consensus 6 L~iL~CP------~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2hf1_A 6 LEILVCP------LCKGPLVFDKSKDELICKGDRLAF 36 (68)
T ss_dssp EEECBCT------TTCCBCEEETTTTEEEETTTTEEE
T ss_pred hhheECC------CCCCcCeEeCCCCEEEcCCCCcEe
Confidence 4456999 9999887543 488999998765
No 106
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=46.73 E-value=7 Score=31.77 Aligned_cols=26 Identities=35% Similarity=1.049 Sum_probs=19.2
Q ss_pred cCCCCcCcccccce-eeecC-ceeecccCccccC
Q 006263 512 ACPLMIGDRQCNKK-VTQSG-NRWQCDRCNQEID 543 (653)
Q Consensus 512 aC~~~~~~~~C~KK-v~~~~-~~~~C~kC~~~~~ 543 (653)
-|| .|+|. |.... +.|.|.+|++.+.
T Consensus 37 ~Cp------fCGk~~vkR~a~GIW~C~kCg~~~A 64 (83)
T 3j21_i 37 TCP------VCGRKAVKRISTGIWQCQKCGATFA 64 (83)
T ss_dssp CCS------SSCSSCEEEEETTEEEETTTCCEEE
T ss_pred CCC------CCCCceeEecCcCeEEcCCCCCEEe
Confidence 599 99885 44333 3999999998764
No 107
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=46.57 E-value=64 Score=27.46 Aligned_cols=71 Identities=15% Similarity=0.182 Sum_probs=38.2
Q ss_pred cccEEEEEEEecCceeEEecCCceeeEEEEEEEe----CCC----CEEEEEEccchhhhhhhhHHHhhccCCCcEEEEEe
Q 006263 342 IVDVIGIVISVNPSVPILRKNGMETQRRILNLKD----TSG----RSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKS 413 (653)
Q Consensus 342 ~vDVIGvV~~v~~~~~i~~k~g~~~~kr~i~l~D----~s~----~~i~vtLWg~~A~~~~~~l~~~~~~~~~~Vvaik~ 413 (653)
.|-++|.|..--++. .+.+|..+.+-.|-.-. ..| .-+.|++||+.|+...++ + ..|..|.+.|
T Consensus 7 ~v~l~G~l~~dpe~r--~t~~G~~v~~f~la~~~~~~~~~g~~~t~~~~v~~wg~~Ae~~~~~----l--~KG~~V~V~G 78 (116)
T 3vdy_A 7 QVMLVGRLTKDPDLR--YTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALY----C--QKGSLVGVSG 78 (116)
T ss_dssp CEEEEEEESSCCEEE--ECTTSCEEEEEEEEEECSSCCSSSCCCEEEEEEEEEHHHHHHHHHH----C--CTTCEEEEEE
T ss_pred EEEEEEEEccCcEEE--ECCCCCEEEEEEEEEeccccCCCCccccEEEEEEEECHHHHHHHHh----C--CCCCEEEEEE
Confidence 356777776533332 23456554333333321 112 259999999998764222 2 3466666654
Q ss_pred -eEeecCC
Q 006263 414 -GKVNDFS 420 (653)
Q Consensus 414 -~rV~~f~ 420 (653)
.+...|.
T Consensus 79 ~l~~~~~~ 86 (116)
T 3vdy_A 79 RIQTRSYE 86 (116)
T ss_dssp EEEEEEEC
T ss_pred EEEeeEEE
Confidence 4555564
No 108
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=46.48 E-value=9.4 Score=31.81 Aligned_cols=25 Identities=28% Similarity=0.744 Sum_probs=17.6
Q ss_pred ecCCCCcCcccccceeeecCceeecccCccc
Q 006263 511 TACPLMIGDRQCNKKVTQSGNRWQCDRCNQE 541 (653)
Q Consensus 511 ~aC~~~~~~~~C~KKv~~~~~~~~C~kC~~~ 541 (653)
.-|| .|..-+..+++.++|+.|++.
T Consensus 33 ~~CP------~Cq~eL~~~g~~~hC~~C~~~ 57 (101)
T 2jne_A 33 LHCP------QCQHVLDQDNGHARCRSCGEF 57 (101)
T ss_dssp CBCS------SSCSBEEEETTEEEETTTCCE
T ss_pred ccCc------cCCCcceecCCEEECccccch
Confidence 4677 777777766666667777764
No 109
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=46.21 E-value=93 Score=26.07 Aligned_cols=71 Identities=13% Similarity=0.082 Sum_probs=42.3
Q ss_pred cccEEEEEEEecCceeEEecCCceeeEEEEEEE-----eCCC------CEEEEEEccchhhhhhhhHHHhhccCCCcEEE
Q 006263 342 IVDVIGIVISVNPSVPILRKNGMETQRRILNLK-----DTSG------RSVELTLWGDFCNKEGQKLQEMVDVGFFPVLS 410 (653)
Q Consensus 342 ~vDVIGvV~~v~~~~~i~~k~g~~~~kr~i~l~-----D~s~------~~i~vtLWg~~A~~~~~~l~~~~~~~~~~Vva 410 (653)
.|-++|.++.--++.. +.+|..+. +|.|. +++| ..+.|++||+.|+ .. +| ..+.-|.
T Consensus 9 kv~LiG~L~~dPelRy--tp~G~~v~--~f~lA~~~~~~~~g~~~~~~~~i~vv~~gk~Ae-~~-~l------~KG~~v~ 76 (103)
T 3k8a_A 9 LVSLAALIEKAFPIRY--TPAGIPVL--DIILKHESWQEENGQQCLVQLEIPARILGRQAE-EW-QY------RQGDCAT 76 (103)
T ss_dssp EEEEEEEEEEECCCEE--CTTSCEEE--EEEEEEEEEEEETTEEEEEEEEEEEEEEHHHHH-HS-TT------CTTCEEE
T ss_pred EEEEEEEECCCCceEE--CCCCCEEE--EEEEEEcccCccCCCEEEeeEEEEEEEEhHHhh-hh-cc------CCCCEEE
Confidence 3667888887766653 23565432 23332 1223 1389999999987 31 12 3577777
Q ss_pred EEee-EeecCCCcee
Q 006263 411 VKSG-KVNDFSGKSI 424 (653)
Q Consensus 411 ik~~-rV~~f~G~sL 424 (653)
+.|- +-+.|+++.|
T Consensus 77 veGrL~~rs~~~~~l 91 (103)
T 3k8a_A 77 VEGFLAQKSRRSLMP 91 (103)
T ss_dssp EEEEEEESSSSCCCE
T ss_pred EEEEEEECccCCccE
Confidence 7654 5567877643
No 110
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=45.56 E-value=13 Score=43.19 Aligned_cols=72 Identities=11% Similarity=0.224 Sum_probs=52.5
Q ss_pred CCCcceeccccCCCCCceEEEEEEEeeccccccccCCCCceeEEEEEEeCCCCeEEEEEchhHHHHHHhhccc--CcEEE
Q 006263 204 APARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEV--GRVYL 281 (653)
Q Consensus 204 ~~~~~~pI~~L~p~~~~w~I~~RV~~k~~ir~~~~~~g~gk~f~~~L~D~~g~~I~at~f~~~~~kf~~~l~e--G~vy~ 281 (653)
..+.+.+|.+|.++. .-+|.|+|.+....+ + +.++.+.+.+.| .+|.|.+++|+.. -....|.. |+.|.
T Consensus 152 d~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~-~----~~~~~~~~~~~d-~~~~~~~~~f~~~--~~~~~~~~~~g~~~~ 222 (780)
T 1gm5_A 152 DRRKIFKLNDLLPGE-KVTTQGKIVSVETKK-F----QNMNILTAVLSD-GLVHVPLKWFNQD--YLQTYLKQLTGKEVF 222 (780)
T ss_dssp CCSCCCCSSCCCSSC-CCEEEECCCCCEEEE-C----SSCEEEEEEECC-SSCCEEEEECSCC--TTHHHHHTTCSSCEE
T ss_pred eCCcCCcHHHcCCCC-EEEEEEEEEEEEeec-C----CCCeEEEEEEEE-CCceEEEEEECcH--HHHhhCccCCCCEEE
Confidence 344567899998865 788999998754322 1 224678888999 5679999999942 23567888 99998
Q ss_pred Eec
Q 006263 282 ISK 284 (653)
Q Consensus 282 is~ 284 (653)
+++
T Consensus 223 ~~G 225 (780)
T 1gm5_A 223 VTG 225 (780)
T ss_dssp EEE
T ss_pred EEE
Confidence 885
No 111
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}
Probab=45.32 E-value=38 Score=33.55 Aligned_cols=61 Identities=13% Similarity=0.160 Sum_probs=47.6
Q ss_pred CCceEEEEEEEeeccccccccCCCCceeEEEEEE------eCCCC-------eEEEEEchhH--HHHHHhhcccCcEEEE
Q 006263 218 QGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL------DSDGG-------EIRVTCFNAV--VDRFYEIIEVGRVYLI 282 (653)
Q Consensus 218 ~~~w~I~~RV~~k~~ir~~~~~~g~gk~f~~~L~------D~~g~-------~I~at~f~~~--~~kf~~~l~eG~vy~i 282 (653)
.++.+|.||+ +--++|... | ..+.+|.|+ |.+++ -|++++|+.. ++ +...|+.|+-++|
T Consensus 146 lNkV~LiGrL-~DPElR~t~---G-~~Va~FslAv~~~~~~~~~~e~~~~Tdw~~Vv~wgk~~~AE-i~~~L~KG~~V~V 219 (257)
T 4dni_A 146 VNSVTLVGVV-HDIQSGFVY---E-DAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAE-VKQKVKEGNVVCV 219 (257)
T ss_dssp EEEEEEEEEE-EEEEEEEET---T-EEEEEEEEEEEEEECCCTTCSCEEEEEEEEEEEESHHHHHH-HHHHCCTTCEEEE
T ss_pred cCEEEEEEEc-CCCEEEEeC---C-cEEEEEEEEECCCccCCCCceEccceEEEEEEEECCccHHH-HHhhCCCCCEEEE
Confidence 3689999999 888888753 2 367777764 33344 4899999999 88 8888999999988
Q ss_pred ec
Q 006263 283 SK 284 (653)
Q Consensus 283 s~ 284 (653)
.+
T Consensus 220 eG 221 (257)
T 4dni_A 220 NG 221 (257)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 112
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=44.62 E-value=60 Score=28.58 Aligned_cols=35 Identities=6% Similarity=0.099 Sum_probs=22.5
Q ss_pred EEEEEEccchhhhhhhhHHHhhccCCCcEEEEEe-eEeecCC
Q 006263 380 SVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKS-GKVNDFS 420 (653)
Q Consensus 380 ~i~vtLWg~~A~~~~~~l~~~~~~~~~~Vvaik~-~rV~~f~ 420 (653)
-+.|++||+.|+... ..+ ..+..|.+.| .+...|.
T Consensus 50 ~~~v~~wg~~Ae~~~----~~l--~KG~~V~V~G~L~~~~~~ 85 (134)
T 2vw9_A 50 FIDARLFGRTAEIAN----QYL--SKGSSVLIEGRLTYESWM 85 (134)
T ss_dssp EEEEEEEHHHHHHHH----HHC--CTTCEEEEEEEEEEEEEE
T ss_pred EEEEEEEcHHHHHHH----HhC--CCCCEEEEEEEEEeeeEE
Confidence 599999999987642 222 3466666654 3555564
No 113
>3nbi_A RECQ-mediated genome instability protein 1; OB-fold, RPA-like, protein binding; 2.00A {Homo sapiens}
Probab=44.08 E-value=56 Score=31.42 Aligned_cols=39 Identities=10% Similarity=0.170 Sum_probs=30.0
Q ss_pred ce-EEEEEecccceeeeeecccchhhcccCCcccCcEEEEee
Q 006263 37 ER-YRFLISDSVSTQHAMLATQLNDRVKTGQVKKGSVVQLID 77 (653)
Q Consensus 37 ~r-yr~~lSDG~~~~~~ml~t~ln~~v~~~~l~~~sIIkl~~ 77 (653)
.| +++.|+||...+.||-...+..+-. .+..|+=|.|+.
T Consensus 135 ~rmLkL~LtDG~~~i~AiE~~~i~~l~~--~~~pGtKill~~ 174 (216)
T 3nbi_A 135 SRMLMLQLTDGIVQIQGMEYQPIPILHS--DLPPGTKILIYG 174 (216)
T ss_dssp CCCEEEEEESSSCEEEEEECSCCTTCCT--TCCTTCEEEEEE
T ss_pred ceEEEEEEcCCCeEEEEEEcccchhccc--CCCCCceEEEeC
Confidence 36 9999999999999997766664422 378888888864
No 114
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=43.80 E-value=11 Score=28.28 Aligned_cols=27 Identities=22% Similarity=0.650 Sum_probs=22.5
Q ss_pred EecCCCCcCcccccceeeecCceeecc--cCcccc
Q 006263 510 YTACPLMIGDRQCNKKVTQSGNRWQCD--RCNQEI 542 (653)
Q Consensus 510 Y~aC~~~~~~~~C~KKv~~~~~~~~C~--kC~~~~ 542 (653)
..+|| .|+..+..+.+...|. .|+..|
T Consensus 10 iL~CP------~c~~~L~~~~~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 10 ILACP------ACHAPLEERDAELICTGQDCGLAY 38 (56)
T ss_dssp SCCCS------SSCSCEEEETTEEEECSSSCCCEE
T ss_pred heeCC------CCCCcceecCCEEEcCCcCCCcEE
Confidence 35899 9999988776789999 898765
No 115
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=43.05 E-value=79 Score=27.16 Aligned_cols=61 Identities=13% Similarity=0.139 Sum_probs=36.2
Q ss_pred ccEEEEEEEecCceeEEecCCceeeEEEEEEEeC-----CCC------EEEEEEccchhhhhhhhHHHhhccCCCcEEEE
Q 006263 343 VDVIGIVISVNPSVPILRKNGMETQRRILNLKDT-----SGR------SVELTLWGDFCNKEGQKLQEMVDVGFFPVLSV 411 (653)
Q Consensus 343 vDVIGvV~~v~~~~~i~~k~g~~~~kr~i~l~D~-----s~~------~i~vtLWg~~A~~~~~~l~~~~~~~~~~Vvai 411 (653)
|=++|.++.--++.. +.+|..+ ..|.|.-. .|. .|.|++||+.|+.. ++ + ..+.-|.+
T Consensus 4 viL~GrL~~dPelRy--TpsG~~V--~~f~LA~~~~~~~~g~~r~~~~~i~vv~~Gk~AE~~-~~----l--~kGs~V~V 72 (115)
T 3fhw_A 4 LELSARVLECGAMRH--TPAGLPA--LELLLVHESEVVEAGHPRRVELTISAVALGDLALLL-AD----T--PLGTEMQV 72 (115)
T ss_dssp EEEEEEEEEECCCEE--CTTSCEE--EEEEEEEEEECCCCC--CEEEEEEEEEEETHHHHHH-TT----C--CTTCEEEE
T ss_pred EEEEEEECcCcceEE--CCCCCEE--EEEEEEEcceeecCCCeeeeeEEEEEEEEhHHHHhh-hc----c--CCCCEEEE
Confidence 457788887777653 2356544 33333322 221 28899999998763 22 2 35777777
Q ss_pred Eee
Q 006263 412 KSG 414 (653)
Q Consensus 412 k~~ 414 (653)
.|-
T Consensus 73 eGr 75 (115)
T 3fhw_A 73 QGF 75 (115)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 116
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=42.38 E-value=9.5 Score=28.02 Aligned_cols=25 Identities=16% Similarity=0.441 Sum_probs=18.7
Q ss_pred EecCCCCcCcccccceeeecCceeecccCcccc
Q 006263 510 YTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEI 542 (653)
Q Consensus 510 Y~aC~~~~~~~~C~KKv~~~~~~~~C~kC~~~~ 542 (653)
..-|| .|+..+- .+.|.|.+|+.+.
T Consensus 14 k~iCp------kC~a~~~--~gaw~CrKCG~~~ 38 (51)
T 3j21_g 14 KYVCL------RCGATNP--WGAKKCRKCGYKR 38 (51)
T ss_dssp EEECT------TTCCEEC--TTCSSCSSSSSCC
T ss_pred CccCC------CCCCcCC--CCceecCCCCCcc
Confidence 44699 9998842 2389999999763
No 117
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=41.62 E-value=68 Score=26.77 Aligned_cols=63 Identities=11% Similarity=0.110 Sum_probs=35.9
Q ss_pred ccEEEEEEEecCceeEEecCCceeeEEEEEEE---eCCCCE-------EEEEEccchhhhhhhhHHHhhccCCCcEEEEE
Q 006263 343 VDVIGIVISVNPSVPILRKNGMETQRRILNLK---DTSGRS-------VELTLWGDFCNKEGQKLQEMVDVGFFPVLSVK 412 (653)
Q Consensus 343 vDVIGvV~~v~~~~~i~~k~g~~~~kr~i~l~---D~s~~~-------i~vtLWg~~A~~~~~~l~~~~~~~~~~Vvaik 412 (653)
|-++|.+..--++.. +.+|..+..-.|-.. ++++ - +.|++||+.|+...++ + ..|.-|.+.
T Consensus 5 v~L~G~l~~dpelR~--t~~G~~v~~f~lA~~~~~~~~~-~~r~~~~~~~vv~~g~~Ae~~~~~----l--~KG~~V~V~ 75 (104)
T 1txy_A 5 LVLSGTVCRAPLRKV--SPSGIPHCQFVLEHRSVQEEAG-FHRQAWCQMPVIVSGHENQAITHS----I--TVGSRITVQ 75 (104)
T ss_dssp EEEEEEEEEEEEEEE--CTTSCEEEEEEEEEEEEEEETT-EEEEEEEEEEEEEESSTTHHHHTT----C--CTTCEEEEE
T ss_pred EEEEEEECCCceEEE--CCCCCEEEEEEEEEeCccccCC-ceeceeEEEEEEEEhHHHHHHHhh----C--CCCCEEEEE
Confidence 557787776555543 335654432222221 2233 4 9999999998774322 2 356777776
Q ss_pred ee
Q 006263 413 SG 414 (653)
Q Consensus 413 ~~ 414 (653)
|-
T Consensus 76 G~ 77 (104)
T 1txy_A 76 GF 77 (104)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 118
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A
Probab=41.48 E-value=79 Score=27.97 Aligned_cols=65 Identities=11% Similarity=0.086 Sum_probs=36.9
Q ss_pred cccEEEEEEEecCceeEEecCCceeeEEEEEE---EeCCCC------EEEEEEccchhhhhhhhHHHhhccCCCcEEEEE
Q 006263 342 IVDVIGIVISVNPSVPILRKNGMETQRRILNL---KDTSGR------SVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVK 412 (653)
Q Consensus 342 ~vDVIGvV~~v~~~~~i~~k~g~~~~kr~i~l---~D~s~~------~i~vtLWg~~A~~~~~~l~~~~~~~~~~Vvaik 412 (653)
.|=++|.++.--++.. +.+|..+..-.|-. .++.|. -|.|++||+.|+...++| ..+.-|.|.
T Consensus 21 kViLiGrL~~DPElRy--TpsG~~Va~ftLA~~~~~~~~G~~~~~~~~i~vv~wGk~AE~~~~yl------~KGs~V~Ve 92 (134)
T 1v1q_A 21 RLVLSGTVCRAPLRKV--SPSGIPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSI------TVGSRITVQ 92 (134)
T ss_dssp EEEEEEEEEEEEEEEE--CTTCCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESTGGGGGGTTC------CTTCEEEEE
T ss_pred EEEEEEEECcCCceEE--CCCCCEEEEEEEEEeCcCcCCCCEecceEEEEEEEEhHHHHHHHHhc------CCCCEEEEE
Confidence 3667788777655543 23565442222211 233341 389999999998753332 356777766
Q ss_pred ee
Q 006263 413 SG 414 (653)
Q Consensus 413 ~~ 414 (653)
|-
T Consensus 93 Gr 94 (134)
T 1v1q_A 93 GF 94 (134)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 119
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=41.47 E-value=9.4 Score=31.61 Aligned_cols=26 Identities=27% Similarity=0.712 Sum_probs=19.1
Q ss_pred cCCCCcCcccccce-eeecC-ceeecccCccccC
Q 006263 512 ACPLMIGDRQCNKK-VTQSG-NRWQCDRCNQEID 543 (653)
Q Consensus 512 aC~~~~~~~~C~KK-v~~~~-~~~~C~kC~~~~~ 543 (653)
-|| .|+|. |.... +.|.|.+|++.+.
T Consensus 38 ~Cp------fCgk~~vkR~a~GIW~C~~Cg~~~A 65 (92)
T 3iz5_m 38 FCE------FCGKFAVKRKAVGIWGCKDCGKVKA 65 (92)
T ss_dssp CCT------TTCSSCBEEEETTEEECSSSCCEEE
T ss_pred cCc------ccCCCeeEecCcceEEcCCCCCEEe
Confidence 699 99885 43333 3899999998764
No 120
>3rlo_A Gamma-interferon-inducible protein 16; HIN200/OB fold/DNA binding, DNA binding/cytosolic DNA sensor cytosol, DNA binding protein; 1.80A {Homo sapiens} PDB: 3rnu_A* 3b6y_A 3rln_A
Probab=41.17 E-value=2.3e+02 Score=26.57 Aligned_cols=174 Identities=14% Similarity=0.134 Sum_probs=114.1
Q ss_pred EEEEEEeeccccccccCCCCceeEEEEEEeCCCCeEEEEEchhHHHHHHhhcccCcEEEEeceEEecCCCcccCCCCceE
Q 006263 223 IKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWE 302 (653)
Q Consensus 223 I~~RV~~k~~ir~~~~~~g~gk~f~~~L~D~~g~~I~at~f~~~~~kf~~~l~eG~vy~is~~~V~~a~~~f~~~~~~ye 302 (653)
..|.|+.-.+.=+|.... +.+.|.-+++- +..-.++-+|+- .+.+.|..+++..||++.- +.--
T Consensus 12 ~~VmVLkaTepF~Ye~~E-~k~MFHATVAT-etqfF~VKVfn~---~LKeKF~pk~iI~ISdY~~-----------~~gf 75 (204)
T 3rlo_A 12 KEVMVLNATESFVYEPKE-QKKMFHATVAT-ENEVFRVKVFNI---DLKEKFTPKKIIAIANYVC-----------RNGF 75 (204)
T ss_dssp EEEEEEEECCCEEEETTT-TEEEEEEEEEC-SSCEEEEEECCG---GGTTTTCTTCEEEEESCEE-----------ETTE
T ss_pred eEEEEEeccCCceecccc-cceEEEEEEee-ccceEEEEEecc---hhhhhcCCCcEEEEEeccc-----------ccce
Confidence 356677766666777655 34689999999 799999999997 4577889999999999742 2234
Q ss_pred EEeccccEEEecc-CCCCCCCccc----ceecchhhhhhcccCccccEEEEEEEecCceeEEecCCceeeEEEEEEEeCC
Q 006263 303 IFLEATSTVDLCT-EEDDSIPKQQ----FSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTS 377 (653)
Q Consensus 303 i~f~~~T~I~~~~-d~~~~iP~~~----f~f~~i~~i~~~~~~~~vDVIGvV~~v~~~~~i~~k~g~~~~kr~i~l~D~s 377 (653)
|..++.|.|.++. |..-.||... -.=-+|++|.....+.+|+=+=.|... +.+. ...-..|.|.+
T Consensus 76 LEi~~~SsVse~~~dq~~eVp~~ii~~A~~TPKI~~L~~q~~Gt~V~G~F~v~KK------~v~~----~~~~YeI~DnT 145 (204)
T 3rlo_A 76 LEVYPFTLVADVNADRNMEIPKGLIRSASVTPKINQLCSQTKGSFVNGVFEVHKK------NVRG----EFTYYEIQDNT 145 (204)
T ss_dssp EEECTTSEEEECCSSSCCCCCHHHHHHHHCCCCHHHHHTCSSCEEEEEEEEEEEE------EEET----TEEEEEEEETT
T ss_pred EEEecccEEEEccCCceeEcCHHHHHhcccCcchhhhhcCCCCCEEeEEEEEEEE------Eecc----ceEEEEEecCC
Confidence 6677888998884 3334567532 123478888877777766543333321 1111 23456899999
Q ss_pred CCEEEEEEccchhhhhhhhHHHhhccCCCcEEEEEeeEeecCC-C-ceeccccceEE
Q 006263 378 GRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFS-G-KSIGTIPSTQL 432 (653)
Q Consensus 378 ~~~i~vtLWg~~A~~~~~~l~~~~~~~~~~Vvaik~~rV~~f~-G-~sLs~~~~S~i 432 (653)
| .++|...|.+... ...+|+=+-+....++.-. + ..|.+...|-|
T Consensus 146 G-~MeVvv~G~~~~i---------~CEeGDKLrL~cFeL~~~~~~~~qL~s~~HSfi 192 (204)
T 3rlo_A 146 G-KMEVVVHGRLTTI---------NCEEGDKLKLTCFELAPKSGNTGELRSVIHSHI 192 (204)
T ss_dssp E-EEEEEECGGGGGC---------CCCTTCEEEEEEEEEECCTTTTCEEEEEEEEEE
T ss_pred C-cEEEEEeccCccc---------ccCCCCeeEEEEEEEecccCCceeEEEecceeE
Confidence 9 7999999998543 2345676666666665422 2 35655445543
No 121
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=40.89 E-value=10 Score=29.48 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=21.2
Q ss_pred EecCCCCcCcccccceeeecC--ceeecccCcccc
Q 006263 510 YTACPLMIGDRQCNKKVTQSG--NRWQCDRCNQEI 542 (653)
Q Consensus 510 Y~aC~~~~~~~~C~KKv~~~~--~~~~C~kC~~~~ 542 (653)
..+|| .|+..+..+. +...|+.|+..|
T Consensus 10 iL~CP------~ck~~L~~~~~~g~LvC~~c~~~Y 38 (67)
T 2jny_A 10 VLACP------KDKGPLRYLESEQLLVNERLNLAY 38 (67)
T ss_dssp CCBCT------TTCCBCEEETTTTEEEETTTTEEE
T ss_pred HhCCC------CCCCcCeEeCCCCEEEcCCCCccc
Confidence 45899 9999887543 388999998765
No 122
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=40.11 E-value=7.3 Score=28.38 Aligned_cols=17 Identities=35% Similarity=0.868 Sum_probs=9.0
Q ss_pred eeecccCccccCCceEEE
Q 006263 532 RWQCDRCNQEIDECDYRY 549 (653)
Q Consensus 532 ~~~C~kC~~~~~~~~~rY 549 (653)
.|.|.+|++.. .|.+||
T Consensus 11 ~WkC~~C~k~N-~Pl~ry 27 (53)
T 2cr8_A 11 EWQCTECKKFN-SPSKRY 27 (53)
T ss_dssp CEECSSSCCEE-CSSCCB
T ss_pred eeecccccccC-CCccch
Confidence 56666666432 455554
No 123
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=39.66 E-value=19 Score=43.52 Aligned_cols=77 Identities=22% Similarity=0.212 Sum_probs=36.9
Q ss_pred ecchhhhhh----cccCccccEEEEEEEecCceeEEecCCceeeEEEEEEEeCCCCEEEEEEccchhhhhhhhHHHhhcc
Q 006263 328 FRHISEIES----AENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDV 403 (653)
Q Consensus 328 f~~i~~i~~----~~~~~~vDVIGvV~~v~~~~~i~~k~g~~~~kr~i~l~D~s~~~i~vtLWg~~A~~~~~~l~~~~~~ 403 (653)
.+++.+|.. ...+..|-|.|+|+.+... .+|.|+. .--++|.|.+| .+++++|.+....+...|
T Consensus 1026 ~~~~~~l~~~~~~~~~g~~v~v~G~v~~~~~~---~Tk~G~~--maf~tleD~tg-~~evvvf~~~~~~~~~~l------ 1093 (1220)
T 2hpi_A 1026 SCTIEELSEFVRELPGKPKVLLSGMVEEVVRK---PTRSGGM--MARFTLSDETG-ALEVVVFGRAYEGVSPKL------ 1093 (1220)
T ss_dssp SSCTTTHHHHHSSSSSSCEEEEEEEECCC-----------------CEEEEETTE-EEEEC-------------------
T ss_pred CccHHHHhhhhhhccCCCeEEEEEEEEEEEEe---ecCCCCe--EEEEEEEECCC-CEEEEEcHHHHHHHHHHh------
Confidence 346667753 3355667799999887655 3455653 35689999999 799999999876642222
Q ss_pred CCCcEEEEEeeEee
Q 006263 404 GFFPVLSVKSGKVN 417 (653)
Q Consensus 404 ~~~~Vvaik~~rV~ 417 (653)
..+.+|.++| +|.
T Consensus 1094 ~~~~~~~v~G-~v~ 1106 (1220)
T 2hpi_A 1094 KEDIPLLVLA-EVE 1106 (1220)
T ss_dssp CTTCEEEEEE-EEC
T ss_pred ccCCEEEEEE-EEE
Confidence 2456666665 453
No 124
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=39.18 E-value=11 Score=31.86 Aligned_cols=26 Identities=35% Similarity=0.981 Sum_probs=18.9
Q ss_pred cCCCCcCcccccce-eeecC-ceeecccCccccC
Q 006263 512 ACPLMIGDRQCNKK-VTQSG-NRWQCDRCNQEID 543 (653)
Q Consensus 512 aC~~~~~~~~C~KK-v~~~~-~~~~C~kC~~~~~ 543 (653)
-|| .|+|. |.... +.|.|.+|++.+.
T Consensus 38 ~Cp------fCgk~~vKR~a~GIW~C~kCg~~~A 65 (103)
T 4a17_Y 38 GCP------FCGKVAVKRAAVGIWKCKPCKKIIA 65 (103)
T ss_dssp ECT------TTCCEEEEEEETTEEEETTTTEEEE
T ss_pred CCC------CCCCceeeecCcceEEcCCCCCEEe
Confidence 489 99875 44333 3899999998763
No 125
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=38.72 E-value=15 Score=29.65 Aligned_cols=20 Identities=20% Similarity=0.806 Sum_probs=8.4
Q ss_pred cccceeeecCceeecccCcc
Q 006263 521 QCNKKVTQSGNRWQCDRCNQ 540 (653)
Q Consensus 521 ~C~KKv~~~~~~~~C~kC~~ 540 (653)
.|..-+..++..+.|+.|++
T Consensus 7 ~C~~~l~~~~~~~~C~~C~~ 26 (81)
T 2jrp_A 7 VCHHALERNGDTAHCETCAK 26 (81)
T ss_dssp SSCSCCEECSSEEECTTTCC
T ss_pred CCCCccccCCCceECccccc
Confidence 44444443333334444443
No 126
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=38.61 E-value=25 Score=32.64 Aligned_cols=29 Identities=21% Similarity=0.289 Sum_probs=25.7
Q ss_pred eEEEEEEeCCCCeEEEEEchhHHHHHHhhc
Q 006263 245 VFSFDLLDSDGGEIRVTCFNAVVDRFYEII 274 (653)
Q Consensus 245 ~f~~~L~D~~g~~I~at~f~~~~~kf~~~l 274 (653)
++++.+.| .+|.+.+++|++.++++..+|
T Consensus 76 il~~~i~D-~TG~~wvt~F~e~ae~ilG~~ 104 (172)
T 3u50_C 76 MLRAFVQD-STGTIPVMIFDQQSSQLINQI 104 (172)
T ss_dssp CEEEEEEE-TTEEEEEEECHHHHHHHHHHH
T ss_pred EEEEEEEe-CCCCEEEEEEhHHHHHHhCCC
Confidence 58999999 899999999999999887663
No 127
>2i46_A Adrenocortical dysplasia protein homolog; TPP1, OB fold, POT1 binding, protein binding; 2.70A {Homo sapiens}
Probab=38.19 E-value=1.2e+02 Score=26.70 Aligned_cols=82 Identities=13% Similarity=0.141 Sum_probs=53.5
Q ss_pred CCCCe-EEEEEEEEcC----CC--------CceEEEEEecccceeeeeecccchhhc--cc--CCc--ccCcEEEEeeeE
Q 006263 19 NSKPL-VQVMDIKLIG----ST--------QERYRFLISDSVSTQHAMLATQLNDRV--KT--GQV--KKGSVVQLIDYI 79 (653)
Q Consensus 19 ~~~pv-vQVl~ik~~~----~~--------~~ryr~~lSDG~~~~~~ml~t~ln~~v--~~--~~l--~~~sIIkl~~y~ 79 (653)
-..|+ =|+|.+-+.. ++ .----+.+|||.|+++|+..-..-... +. ..+ .+|.|+-|.+|.
T Consensus 20 ~ssP~~gQllevlq~ae~~~~gps~apdt~~v~A~llvSDgthsvrclvTrEA~~~sdwEEk~Fgfr~~egrlllLqd~~ 99 (161)
T 2i46_A 20 PSSPRAGQLLEVLQDAEAAVAGPSHAPDTSDVGATLLVSDGTHSVRCLVTREALDTSDWEEKEFGFRGTEGRLLLLQDCG 99 (161)
T ss_dssp CCSCEEEEEEEEEECCCCCCCSCCSSCCCTTSCEEEEEECSSCEEEEEECHHHHHTSCCTTSCSSCTTCTTEEEEEEEEE
T ss_pred cCCcchHHHHHHHHHhccccCCCCCCCCCCCceeEEEEcCCceEEEEEecHHHhhhhhhhhhhcCcccccceEEEEecCC
Confidence 34564 4888877763 11 234689999999999998764322222 11 122 278899999998
Q ss_pred eeee--c----CeEEEEEEeeeEeecC
Q 006263 80 CSTV--Q----NRKIIVVLNMETIILD 100 (653)
Q Consensus 80 ~~~~--~----~k~~iii~~~evl~~~ 100 (653)
+..- . ...++-|..|.+|..+
T Consensus 100 V~vqv~e~~~~~EF~lqVdrF~lLPtE 126 (161)
T 2i46_A 100 VHVQVAEGGAPAEFYLQVDRFSLLPTE 126 (161)
T ss_dssp EEEECCBTTBCCEEEEEEEEEEEEEEE
T ss_pred EEEEEecCCCceeEEEEEeeEeecccc
Confidence 7642 2 2568888888888764
No 128
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=36.72 E-value=30 Score=32.25 Aligned_cols=27 Identities=22% Similarity=0.407 Sum_probs=23.0
Q ss_pred eeEEEEEEeCCCCeEEEEEchhHHHHHH
Q 006263 244 KVFSFDLLDSDGGEIRVTCFNAVVDRFY 271 (653)
Q Consensus 244 k~f~~~L~D~~g~~I~at~f~~~~~kf~ 271 (653)
-++++.+.| .+|.+.+++|++.++++-
T Consensus 79 y~l~~~i~D-~Tg~~~~t~F~~~ae~il 105 (181)
T 1l1o_C 79 MILSVNIAD-FQENQWVTCFQESAEAIL 105 (181)
T ss_dssp EEEEEEEEC-SSCEEEEEEEHHHHHHHH
T ss_pred EEEEEEEEe-CCCCEEEEEEhHHHHHHh
Confidence 368999999 899999999999877653
No 129
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=36.44 E-value=18 Score=43.69 Aligned_cols=74 Identities=16% Similarity=0.217 Sum_probs=34.8
Q ss_pred eeccccC------CCCCceEEEEEEEeeccccccccCCCCceeEEEEEEeCCCCeEEEEEchhHHHHHHhhcccCcEEEE
Q 006263 209 IPIAALN------PYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLI 282 (653)
Q Consensus 209 ~pI~~L~------p~~~~w~I~~RV~~k~~ir~~~~~~g~gk~f~~~L~D~~g~~I~at~f~~~~~kf~~~l~eG~vy~i 282 (653)
+++.+|. +....-+|.|-|+..-..++ ++|+ ++.-+.|-| .+|.+.+++|.+..+++.+.|.+|.++.+
T Consensus 1027 ~~~~~l~~~~~~~~~g~~v~v~G~v~~~~~~~T---k~G~-~maf~tleD-~tg~~evvvf~~~~~~~~~~l~~~~~~~v 1101 (1220)
T 2hpi_A 1027 CTIEELSEFVRELPGKPKVLLSGMVEEVVRKPT---RSGG-MMARFTLSD-ETGALEVVVFGRAYEGVSPKLKEDIPLLV 1101 (1220)
T ss_dssp SCTTTHHHHHSSSSSSCEEEEEEEECCC----------------CEEEEE-TTEEEEEC-------------CTTCEEEE
T ss_pred ccHHHHhhhhhhccCCCeEEEEEEEEEEEEeec---CCCC-eEEEEEEEE-CCCCEEEEEcHHHHHHHHHHhccCCEEEE
Confidence 3566663 12233567777776544433 3332 455677888 78899999999999999999999999988
Q ss_pred eceEEe
Q 006263 283 SKGSLK 288 (653)
Q Consensus 283 s~~~V~ 288 (653)
.+ +|.
T Consensus 1102 ~G-~v~ 1106 (1220)
T 2hpi_A 1102 LA-EVE 1106 (1220)
T ss_dssp EE-EEC
T ss_pred EE-EEE
Confidence 64 553
No 130
>2xvs_A Tetratricopeptide repeat protein 5; antitumor protein, P53 cofactor, stress-response; 1.80A {Homo sapiens}
Probab=34.16 E-value=61 Score=29.81 Aligned_cols=75 Identities=25% Similarity=0.379 Sum_probs=54.9
Q ss_pred CcceeccccCCCCC-ceEEEEEEEeeccccccccCCCCceeEEEEEEeCCCCeEEEEEchhHHHHHHhhcccCcEEEEec
Q 006263 206 ARIIPIAALNPYQG-RWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISK 284 (653)
Q Consensus 206 ~~~~pI~~L~p~~~-~w~I~~RV~~k~~ir~~~~~~g~gk~f~~~L~D~~g~~I~at~f~~~~~kf~~~l~eG~vy~is~ 284 (653)
-...+|++|.++.| .-.|.+||+-- +.+ .+.--|.+.++|++|.-.-++++|-. +.+. +.+|+.+.|-.
T Consensus 61 l~~~~l~~L~~G~N~g~vv~gKVv~~--i~~-----e~~vP~~f~~vD~~g~c~avsVYNl~-~~~G--~~iGDsV~Ipe 130 (166)
T 2xvs_A 61 LELKPLSTLQPGVNSGAVILGKVVFS--LTT-----EEKVPFTFGLVDSDGPCYAVMVYNIV-QSWG--VLIGDSVAIPE 130 (166)
T ss_dssp CEECCGGGCCSEECTTEEEEEEEEEE--ECC-----TTCCSEEEEEESSSSCCEEEEECCCC-SSCC--CCTTCEEEEES
T ss_pred eeeeeHHHcccccCCCcEEEEEEEEE--ecC-----CCCCceEEEEECCCCCEEEEEEEecc-CCcc--eEecCEEEeCC
Confidence 45679999999987 57799999863 111 12345999999999999999999843 2121 67788888877
Q ss_pred eEEecC
Q 006263 285 GSLKPA 290 (653)
Q Consensus 285 ~~V~~a 290 (653)
..++.-
T Consensus 131 P~v~~v 136 (166)
T 2xvs_A 131 PNLRLH 136 (166)
T ss_dssp CEEEEE
T ss_pred CcEEEE
Confidence 666543
No 131
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=32.92 E-value=14 Score=32.38 Aligned_cols=27 Identities=33% Similarity=0.743 Sum_probs=22.6
Q ss_pred EecCCCCcCcccccceeeecCc-eeecccCcccc
Q 006263 510 YTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEI 542 (653)
Q Consensus 510 Y~aC~~~~~~~~C~KKv~~~~~-~~~C~kC~~~~ 542 (653)
.|.|| .|+.--+.+.+ .|-|+.|...+
T Consensus 27 lP~CP------~C~seytYeDg~l~vCPeC~hEW 54 (138)
T 2akl_A 27 LPPCP------QCNSEYTYEDGALLVCPECAHEW 54 (138)
T ss_dssp SCCCT------TTCCCCCEECSSSEEETTTTEEE
T ss_pred CCCCC------CCCCcceEecCCeEECCcccccc
Confidence 58999 99998766554 99999999876
No 132
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=32.69 E-value=39 Score=27.41 Aligned_cols=30 Identities=20% Similarity=0.367 Sum_probs=25.0
Q ss_pred EEEEeCCCeEEEEEechhhhhhhCCCHHHHHH
Q 006263 553 AQIQDQTGLTWVTAFQESGEEILGCPAKELYM 584 (653)
Q Consensus 553 ~~i~D~Tg~~~~~~F~~~ae~llG~sA~el~~ 584 (653)
+.+.|..|. ++.++..+++|+|.+++|+..
T Consensus 6 i~~~d~~g~--i~~~N~a~~~l~G~~~~el~G 35 (119)
T 2vv6_A 6 MIVIDGHGI--IQLFSTAAERLFGWSELEAIG 35 (119)
T ss_dssp EEEEETTSB--EEEECHHHHHHHCCCHHHHTT
T ss_pred EEEECCCCe--EEEEhHHHHHHhCCCHHHHcC
Confidence 456788875 577999999999999999864
No 133
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=30.58 E-value=24 Score=26.19 Aligned_cols=25 Identities=32% Similarity=0.921 Sum_probs=18.4
Q ss_pred ecCCCCcCcccccceee--ecCceeecccCccc
Q 006263 511 TACPLMIGDRQCNKKVT--QSGNRWQCDRCNQE 541 (653)
Q Consensus 511 ~aC~~~~~~~~C~KKv~--~~~~~~~C~kC~~~ 541 (653)
.-|| .|+--+. ...+.|.|.+|+-+
T Consensus 19 ~fCP------kCG~~~~ma~~~dr~~C~kCgyt 45 (55)
T 2k4x_A 19 RFCP------RCGPGVFLAEHADRYSCGRCGYT 45 (55)
T ss_dssp CCCT------TTTTTCCCEECSSEEECTTTCCC
T ss_pred ccCc------CCCCceeEeccCCEEECCCCCCE
Confidence 3699 8887443 44569999999865
No 134
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=29.07 E-value=11 Score=28.93 Aligned_cols=28 Identities=36% Similarity=0.780 Sum_probs=19.4
Q ss_pred cCCCCcCcccccceeeecCceeecccCccccCCceEEE
Q 006263 512 ACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRY 549 (653)
Q Consensus 512 aC~~~~~~~~C~KKv~~~~~~~~C~kC~~~~~~~~~rY 549 (653)
-|. .|+|||.-. .+.| .|+..+ =..+||
T Consensus 17 rC~------~C~kkvgl~--~f~C-rCg~~F-C~~HR~ 44 (64)
T 1wg2_A 17 RCF------SCNKKVGVM--GFKC-KCGSTF-CGSHRY 44 (64)
T ss_dssp SCT------TTCCCCTTS--CEEC-TTSCEE-CSSSCS
T ss_pred cCh------hhCCccccc--CeEe-ecCCEe-cccCCC
Confidence 687 899997543 5889 898765 234444
No 135
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=28.87 E-value=18 Score=24.95 Aligned_cols=14 Identities=14% Similarity=0.684 Sum_probs=10.1
Q ss_pred CceeecccCccccC
Q 006263 530 GNRWQCDRCNQEID 543 (653)
Q Consensus 530 ~~~~~C~kC~~~~~ 543 (653)
.+.|.|++|++.++
T Consensus 7 ~~~~~C~~C~~~i~ 20 (39)
T 2i5o_A 7 EDQVPCEKCGSLVP 20 (39)
T ss_dssp CCEEECTTTCCEEE
T ss_pred CCCcccccccCcCC
Confidence 34788888887753
No 136
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=28.77 E-value=11 Score=28.99 Aligned_cols=22 Identities=32% Similarity=0.908 Sum_probs=16.9
Q ss_pred cCCCCcCcccccceeeecCceeecccCcccc
Q 006263 512 ACPLMIGDRQCNKKVTQSGNRWQCDRCNQEI 542 (653)
Q Consensus 512 aC~~~~~~~~C~KKv~~~~~~~~C~kC~~~~ 542 (653)
-|. .|+|||.-. .+.| +|+..+
T Consensus 17 rC~------~C~kkvgl~--~f~C-rCg~~F 38 (64)
T 1wfh_A 17 RCT------VCRKRVGLT--GFMC-RCGTTF 38 (64)
T ss_dssp CCT------TTCCCCCTT--CEEC-SSSCEE
T ss_pred cCh------hhCCccCcc--CEEe-ecCCEe
Confidence 687 899998644 5889 688765
No 137
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=28.65 E-value=20 Score=35.93 Aligned_cols=24 Identities=21% Similarity=0.771 Sum_probs=18.4
Q ss_pred ecCCCCcCcccccceeee--cCc--eeecccCcc
Q 006263 511 TACPLMIGDRQCNKKVTQ--SGN--RWQCDRCNQ 540 (653)
Q Consensus 511 ~aC~~~~~~~~C~KKv~~--~~~--~~~C~kC~~ 540 (653)
..|| .|+..+.. .++ .|+|+.|++
T Consensus 246 ~pC~------~CG~~I~~~~~~gR~t~~CP~CQ~ 273 (273)
T 3u6p_A 246 NPCK------RCGTPIEKTVVAGRGTHYCPRCQR 273 (273)
T ss_dssp SBCT------TTCCBCEEEEETTEEEEECTTTCC
T ss_pred CCCC------CCCCeEEEEEECCCCeEECCCCCC
Confidence 5899 89987754 233 999999984
No 138
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=28.28 E-value=30 Score=31.41 Aligned_cols=41 Identities=17% Similarity=0.483 Sum_probs=27.9
Q ss_pred cEEEEE--EEEEEEeCCceEEecCCCCcCcccccce--eeecCceeecccCcccc
Q 006263 492 DWVTVR--AFITFIKSDSFCYTACPLMIGDRQCNKK--VTQSGNRWQCDRCNQEI 542 (653)
Q Consensus 492 ~~~~v~--atI~~i~~d~~~Y~aC~~~~~~~~C~KK--v~~~~~~~~C~kC~~~~ 542 (653)
.||.|. +.|..++. .||++ .|+-- +..-.+.|+|-+|+-++
T Consensus 104 ~~~~~~~~~~~~~~~~------~c~~~----~cg~g~fma~h~~r~~cgkc~~t~ 148 (152)
T 3u5c_f 104 SYYKVDAEGKVTKLRR------ECSNP----TCGAGVFLANHKDRLYCGKCHSVY 148 (152)
T ss_dssp CCSEECSSSCEECCSC------BCCST----TSCSSSBEEECSSCEEESSSSSCC
T ss_pred eEEEEccCCeEEECcC------cCCCc----cCCCceEecccCCCcccCCCceEE
Confidence 356654 45665544 59966 69884 44555699999999764
No 139
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=28.04 E-value=22 Score=35.43 Aligned_cols=25 Identities=28% Similarity=0.789 Sum_probs=19.1
Q ss_pred ecCCCCcCcccccceeeec--Cc--eeecccCccc
Q 006263 511 TACPLMIGDRQCNKKVTQS--GN--RWQCDRCNQE 541 (653)
Q Consensus 511 ~aC~~~~~~~~C~KKv~~~--~~--~~~C~kC~~~ 541 (653)
..|| .|+..+... ++ .|+|+.|++.
T Consensus 236 ~pC~------~CG~~I~~~~~~gR~t~~CP~CQ~~ 264 (266)
T 1ee8_A 236 LPCP------ACGRPVERRVVAGRGTHFCPTCQGE 264 (266)
T ss_dssp SBCT------TTCCBCEEEESSSCEEEECTTTTTC
T ss_pred CCCC------CCCCEeeEEEECCCceEECCCCCCC
Confidence 6799 899876532 23 9999999974
No 140
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=27.88 E-value=11 Score=29.76 Aligned_cols=28 Identities=39% Similarity=0.850 Sum_probs=19.8
Q ss_pred cCCCCcCcccccceeeecCceeecccCccccCCceEEE
Q 006263 512 ACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRY 549 (653)
Q Consensus 512 aC~~~~~~~~C~KKv~~~~~~~~C~kC~~~~~~~~~rY 549 (653)
-|. .|+|||.-. .+.| +|+..+ =..+||
T Consensus 27 RC~------~C~kkvgL~--~f~C-rCg~~F-Cs~HRy 54 (74)
T 1wfp_A 27 RCL------SCNKKVGVT--GFKC-RCGSTF-CGTHRY 54 (74)
T ss_dssp BCS------SSCCBCTTT--CEEC-TTSCEE-CTTTCS
T ss_pred cch------hhcCccccc--ceEe-ccCCEe-ccccCC
Confidence 688 899998654 6899 798765 234444
No 141
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=27.57 E-value=21 Score=35.58 Aligned_cols=24 Identities=17% Similarity=0.755 Sum_probs=18.4
Q ss_pred ecCCCCcCcccccceeeec--Cc--eeecccCcc
Q 006263 511 TACPLMIGDRQCNKKVTQS--GN--RWQCDRCNQ 540 (653)
Q Consensus 511 ~aC~~~~~~~~C~KKv~~~--~~--~~~C~kC~~ 540 (653)
..|| .|+..+... ++ .|+|+.|++
T Consensus 241 ~pC~------~CG~~I~~~~~~gR~t~~CP~CQ~ 268 (268)
T 1k82_A 241 EPCR------VCGTPIVATKHAQRATFYCRQCQK 268 (268)
T ss_dssp SBCT------TTCCBCEEEEETTEEEEECTTTCC
T ss_pred CCCC------CCCCEeeEEEECCCceEECCCCCC
Confidence 6799 899877532 23 999999984
No 142
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=27.49 E-value=21 Score=35.62 Aligned_cols=24 Identities=21% Similarity=0.686 Sum_probs=18.5
Q ss_pred ecCCCCcCcccccceeeec--Cc--eeecccCcc
Q 006263 511 TACPLMIGDRQCNKKVTQS--GN--RWQCDRCNQ 540 (653)
Q Consensus 511 ~aC~~~~~~~~C~KKv~~~--~~--~~~C~kC~~ 540 (653)
..|| .|+..+... ++ .|+|+.|++
T Consensus 243 ~pC~------~CG~~I~~~~~~gR~t~~CP~CQ~ 270 (271)
T 2xzf_A 243 EKCS------RCGAEIQKIKVAGRGTHFCPVCQQ 270 (271)
T ss_dssp SBCT------TTCCBCEEEEETTEEEEECTTTSC
T ss_pred CCCC------CCCCEeeEEEECCCceEECCCCCC
Confidence 6799 899876532 23 999999985
No 143
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=27.41 E-value=76 Score=29.09 Aligned_cols=44 Identities=18% Similarity=0.377 Sum_probs=29.2
Q ss_pred ecCCCCcCcccccceeee---cC---ceeecccCccccCCceEEEEEEEEEEeCCCeE
Q 006263 511 TACPLMIGDRQCNKKVTQ---SG---NRWQCDRCNQEIDECDYRYLLQAQIQDQTGLT 562 (653)
Q Consensus 511 ~aC~~~~~~~~C~KKv~~---~~---~~~~C~kC~~~~~~~~~rY~l~~~i~D~Tg~~ 562 (653)
.=|| .|+.++.. ++ ..+.|+.|+... -..++..+.+.+.+ .|.+
T Consensus 4 ~~C~------~CG~~~~~~~~~G~~~~~~~~~~~~~~~-~~~~~~~v~~ii~~-~~~v 53 (189)
T 3cng_A 4 KFCS------QCGGEVILRIPEGDTLPRYICPKCHTIH-YQNPKVIVGCIPEW-ENKV 53 (189)
T ss_dssp CBCT------TTCCBCEEECCTTCSSCEEEETTTTEEE-CCCCEEEEEEEEEE-TTEE
T ss_pred ccCc------hhCCccccccccCCCCcceECCCCCCcc-CCCCceEEEEEEEe-CCEE
Confidence 4599 89998853 22 278899999543 24556667777766 4544
No 144
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=27.39 E-value=1.7e+02 Score=26.76 Aligned_cols=36 Identities=6% Similarity=0.011 Sum_probs=22.8
Q ss_pred EEEEEEccc-hhhhhhhhHHHhhccCCCcEEEEE-eeEeecCCC
Q 006263 380 SVELTLWGD-FCNKEGQKLQEMVDVGFFPVLSVK-SGKVNDFSG 421 (653)
Q Consensus 380 ~i~vtLWg~-~A~~~~~~l~~~~~~~~~~Vvaik-~~rV~~f~G 421 (653)
-+.|++||+ .|+...++ + ..|..|.+. ..+...|.+
T Consensus 72 ~i~vv~wg~~lAe~~~~~----l--~KG~~V~VeGrL~~r~~~d 109 (169)
T 3lgj_A 72 WHSVVVFNPHFAKIALQY----L--HKGSKVYIEGKLQTRKWQD 109 (169)
T ss_dssp EEEEEECCHHHHHHHHHH----C--CTTCEEEEEEEEEEECC--
T ss_pred EEEEEEeCHHHHHHHHHh----C--CCCCEEEEEEEEEEEEEEC
Confidence 689999999 88764322 2 346666665 446667753
No 145
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=27.30 E-value=22 Score=35.39 Aligned_cols=23 Identities=17% Similarity=0.745 Sum_probs=17.5
Q ss_pred cCCCCcCcccccceeeec--Cc--eeecccCcc
Q 006263 512 ACPLMIGDRQCNKKVTQS--GN--RWQCDRCNQ 540 (653)
Q Consensus 512 aC~~~~~~~~C~KKv~~~--~~--~~~C~kC~~ 540 (653)
.|| .|+..+... ++ .|+|+.|++
T Consensus 236 pC~------~CG~~I~~~~~~gR~t~~CP~CQ~ 262 (262)
T 1k3x_A 236 PCE------RCGSIIEKTTLSSRPFYWCPGCQH 262 (262)
T ss_dssp BCT------TTCCBCEEEEETTEEEEECTTTCC
T ss_pred CCC------CCCCEeEEEEECCCCeEECCCCCC
Confidence 599 899876532 23 999999984
No 146
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=26.72 E-value=50 Score=27.29 Aligned_cols=30 Identities=13% Similarity=0.316 Sum_probs=24.9
Q ss_pred EEEEeCCCeEEEEEechhhhhhhCCCHHHHHH
Q 006263 553 AQIQDQTGLTWVTAFQESGEEILGCPAKELYM 584 (653)
Q Consensus 553 ~~i~D~Tg~~~~~~F~~~ae~llG~sA~el~~ 584 (653)
+.+.|..|. ++.++..+++|+|.+++||..
T Consensus 29 i~~~d~~g~--i~~~N~a~~~l~Gy~~~eliG 58 (130)
T 1d06_A 29 TVVSATDGT--IVSFNAAAVRQFGYAEEEVIG 58 (130)
T ss_dssp EEEEETTSB--EEEECHHHHHHHCCCHHHHTT
T ss_pred EEEECCCCe--EEEEcHHHHHHHCCCHHHHcC
Confidence 456788875 567999999999999999865
No 147
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=26.43 E-value=12 Score=26.80 Aligned_cols=9 Identities=44% Similarity=1.560 Sum_probs=4.9
Q ss_pred eeecccCcc
Q 006263 532 RWQCDRCNQ 540 (653)
Q Consensus 532 ~~~C~kC~~ 540 (653)
.|.|.+|++
T Consensus 13 ~WkC~~C~~ 21 (46)
T 2c6a_A 13 YWKCTSCNE 21 (46)
T ss_dssp CEECTTTCC
T ss_pred eEecccccc
Confidence 455555554
No 148
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=26.31 E-value=3e+02 Score=23.40 Aligned_cols=37 Identities=5% Similarity=0.007 Sum_probs=22.8
Q ss_pred EEEEEEcc-chhhhhhhhHHHhhccCCCcEEEEE-eeEeecCCCc
Q 006263 380 SVELTLWG-DFCNKEGQKLQEMVDVGFFPVLSVK-SGKVNDFSGK 422 (653)
Q Consensus 380 ~i~vtLWg-~~A~~~~~~l~~~~~~~~~~Vvaik-~~rV~~f~G~ 422 (653)
-+.|++|| ..|+...++ + ..|..|.+. ..+...|..+
T Consensus 55 ~~~v~~wg~~~Ae~~~~~----l--~KG~~V~V~G~L~~~~~~d~ 93 (124)
T 3ulp_A 55 WHRIVVYDQNIVDLIDKY----L--RKGRRVYVQGSLHTRKWHTN 93 (124)
T ss_dssp EEEEEECCHHHHHHHHHH----C--CTTCEEEEEEEEEEEEECC-
T ss_pred EEEEEEEEchHHHHHHhh----c--CCCCEEEEEEEEEeEEEeCC
Confidence 49999999 788764322 2 346666665 4455666543
No 149
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=25.66 E-value=1.6e+02 Score=26.47 Aligned_cols=35 Identities=6% Similarity=0.081 Sum_probs=22.1
Q ss_pred EEEEEEccchhhhhhhhHHHhhccCCCcEEEEE-eeEeecCC
Q 006263 380 SVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVK-SGKVNDFS 420 (653)
Q Consensus 380 ~i~vtLWg~~A~~~~~~l~~~~~~~~~~Vvaik-~~rV~~f~ 420 (653)
-+.|++||+.|+...++ + ..|.-|.+. ..+...|.
T Consensus 64 ~~~v~~wg~~Ae~~~~~----l--~KG~~V~VeGrL~~~~~~ 99 (153)
T 1z9f_A 64 FFRIVTFGRLAEFARTY----L--TKGRLVLVEGEMRMRRWE 99 (153)
T ss_dssp EEEEEEEHHHHHHHHHH----C--CTTCEEEEEEEEEEEC--
T ss_pred EEEEEEECHHHHHHHhh----C--CCCCEEEEEEEEEeceEE
Confidence 59999999998774322 2 246666665 44666775
No 150
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=23.92 E-value=38 Score=27.25 Aligned_cols=30 Identities=13% Similarity=0.151 Sum_probs=24.0
Q ss_pred EEEEeCC-CeEEEEEechhhhhhhCCCHHHHHH
Q 006263 553 AQIQDQT-GLTWVTAFQESGEEILGCPAKELYM 584 (653)
Q Consensus 553 ~~i~D~T-g~~~~~~F~~~ae~llG~sA~el~~ 584 (653)
+.+.|.. |. +..++..|++|||.+.+||..
T Consensus 11 i~~~d~~~g~--I~~~N~aa~~l~G~~~~el~g 41 (114)
T 1ll8_A 11 IFTVDAKTTE--ILVANDKACGLLGYSSQDLIG 41 (114)
T ss_dssp EEEEETTTCB--EEEECTTHHHHHTCCTTTTTT
T ss_pred EEEEECCCCe--EEEehHHHHHHhCCCHHHHcC
Confidence 4466765 75 667899999999999999865
No 151
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=23.65 E-value=60 Score=27.75 Aligned_cols=30 Identities=20% Similarity=0.484 Sum_probs=25.2
Q ss_pred EEEEeCCCeEEEEEechhhhhhhCCCHHHHHH
Q 006263 553 AQIQDQTGLTWVTAFQESGEEILGCPAKELYM 584 (653)
Q Consensus 553 ~~i~D~Tg~~~~~~F~~~ae~llG~sA~el~~ 584 (653)
+.+.|..| .++.++..|++|||.+++||..
T Consensus 20 i~~~D~~g--~I~~~N~aa~~l~G~~~~el~G 49 (129)
T 3mfx_A 20 MILVNANG--FIRSCNQRSAELLDCPQVSLKG 49 (129)
T ss_dssp EEEEETTS--BEEEECHHHHHHTTSCHHHHTT
T ss_pred EEEECCCC--EEEeEhHHHHHHHCcCHHHHcC
Confidence 56788887 5677899999999999999864
No 152
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3
Probab=22.68 E-value=1.1e+02 Score=28.41 Aligned_cols=35 Identities=6% Similarity=0.129 Sum_probs=23.0
Q ss_pred EEEEEEccchhhhhhhhHHHhhccCCCcEEEEEe-eEeecCC
Q 006263 380 SVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKS-GKVNDFS 420 (653)
Q Consensus 380 ~i~vtLWg~~A~~~~~~l~~~~~~~~~~Vvaik~-~rV~~f~ 420 (653)
-+.|++||+.|+...++ + ..+..|.|.| .+.+.|.
T Consensus 55 ~i~vv~wg~~Ae~~~~~----l--~KG~~V~VeGrL~~r~~~ 90 (178)
T 1eqq_A 55 WHRVVLFGKLAEVASEY----L--RKGSQVYIEGQLRTRKWT 90 (178)
T ss_dssp EEEEEECHHHHHHHHHH----C--CTTCEEEECCEEEEEEEE
T ss_pred EEEEEEccHHHHHHHHh----c--CCCCEEEEEEEEEeeeEE
Confidence 68999999998774322 2 3567777654 3555564
No 153
>3k7u_C MP18 RNA editing complex protein; OB-fold, RNA-editing proteins, kinetoplastids, system, RNA binding protein; 2.10A {Trypanosoma brucei} PDB: 3k80_D 3stb_D
Probab=22.29 E-value=4.2e+02 Score=23.59 Aligned_cols=70 Identities=14% Similarity=0.135 Sum_probs=38.9
Q ss_pred cccEEEEEEEecCceeEEecCCceeeEEEEEEE----eCCC-------CEEEEEEccch-hhhhhhhHHHhhccCCCcEE
Q 006263 342 IVDVIGIVISVNPSVPILRKNGMETQRRILNLK----DTSG-------RSVELTLWGDF-CNKEGQKLQEMVDVGFFPVL 409 (653)
Q Consensus 342 ~vDVIGvV~~v~~~~~i~~k~g~~~~kr~i~l~----D~s~-------~~i~vtLWg~~-A~~~~~~l~~~~~~~~~~Vv 409 (653)
.|-++|.|..--+ .. + +|+.+.+-.|-.- |..| .-+.|++||+. |+...++ + ..+..|
T Consensus 8 kV~LiGrLg~DPe--r~-t-~G~~va~FslAv~~~~~~~~Ge~~~~~t~w~~vv~wgk~lAe~~~~y----l--~KG~~V 77 (148)
T 3k7u_C 8 SVTLVGVVHDIQS--GF-V-YEDAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAEVKQK----V--KEGNVV 77 (148)
T ss_dssp CEEEEEEEEEEEE--EE-S-SSSEEEEEEEEEECC-----------CEEEEEEEEESHHHHHHHHHH----C--CTTCEE
T ss_pred EEEEEEEeccCCE--ee-e-CCcEEEEEEEEECCceecCCCCEEccccEEEEEEEECcHHHHHHHhh----C--CCCCEE
Confidence 4678888876443 22 2 5655433333222 1112 37999999997 8764333 2 245666
Q ss_pred EEE-eeEeecCCC
Q 006263 410 SVK-SGKVNDFSG 421 (653)
Q Consensus 410 aik-~~rV~~f~G 421 (653)
.+. ..+...|..
T Consensus 78 ~VeGrL~~r~~~d 90 (148)
T 3k7u_C 78 CVNGRLRLSPQLE 90 (148)
T ss_dssp EEEEEEEECCCSC
T ss_pred EEEEEEEeeeeEC
Confidence 655 556777854
No 154
>4gs3_A Single-stranded DNA-binding protein; primosome, oligonucleotide/oligosaccharide binding domain, D binding protein; 1.09A {Thermoanaerobacter tengcongensis}
Probab=22.24 E-value=70 Score=27.17 Aligned_cols=63 Identities=21% Similarity=0.279 Sum_probs=47.8
Q ss_pred CceEEEEEEEeeccccccccCCCCceeEEEEEE-----eCCCCeEEEEEchhHHHHHHhhcccCcEEEEeceEEe
Q 006263 219 GRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL-----DSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLK 288 (653)
Q Consensus 219 ~~w~I~~RV~~k~~ir~~~~~~g~gk~f~~~L~-----D~~g~~I~at~f~~~~~kf~~~l~eG~vy~is~~~V~ 288 (653)
++-.+.||+++--++|+.. .|+ .+.+|.|+ | +.+-|.+++|+.+++-.. +..|+-..+.+ +++
T Consensus 12 N~V~LiGrl~~dpelr~t~--~G~-~v~~f~lAV~R~~~-~~Dfi~ivvw~klAe~~~--~~kG~~v~v~G-~lr 79 (107)
T 4gs3_A 12 NTVTLVGKVFTPLEFSHEL--YGE-KFFNFILEVPRLSE-TKDYLPITISNRLFEGMN--LEVGTRVKIEG-QLR 79 (107)
T ss_dssp SCEEEEEEECSCCEEEEEE--TTE-EEEEEEEEEECTTS-CEEEEEEEEEGGGSTTCC--CCTTCEEEEEE-EEE
T ss_pred CEEEEEEEECCCceEEEec--CCc-EEEEEEEEeCCCCC-CCcEEEEEEEhHHhhHHh--hcCCCEEEEEE-EEE
Confidence 6789999999999998754 343 46677765 3 578999999999987543 45888888877 554
No 155
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=22.23 E-value=2e+02 Score=26.26 Aligned_cols=71 Identities=11% Similarity=0.121 Sum_probs=38.4
Q ss_pred cccEEEEEEEecCceeEEecCCceeeEEEEEEE----eC-C-------CCEEEEEEccchhhhhhhhHHHhhccCCCcEE
Q 006263 342 IVDVIGIVISVNPSVPILRKNGMETQRRILNLK----DT-S-------GRSVELTLWGDFCNKEGQKLQEMVDVGFFPVL 409 (653)
Q Consensus 342 ~vDVIGvV~~v~~~~~i~~k~g~~~~kr~i~l~----D~-s-------~~~i~vtLWg~~A~~~~~~l~~~~~~~~~~Vv 409 (653)
.|-++|.|..--++.. +.+|+.+.+-.|-.- |. + -.-+.|++||+.|+...++ + ..+..|
T Consensus 6 ~V~LiG~L~~dPelr~--t~~G~~va~f~lAv~~~~~~~~~Ge~~d~~t~~~~v~~wg~~Ae~~~~~----l--~KG~~V 77 (168)
T 3afp_A 6 TITIVGNLTADPELRF--TSSGAAVVNFTVASTPRIYDRQSGEWKDGEALFLRCNIWREAAENVAES----L--TRGARV 77 (168)
T ss_dssp EEEEEEEESSSCCCEE--CTTSCEEEEEEEEECC--------CCCCCCCEEEEEEEEHHHHHHHHHH----C--CTTCEE
T ss_pred EEEEEEEECCCCEEEE--CCCCCEEEEEEEEEccccccccCCcEecCCcEEEEEEEehHHHHHHHHh----C--CCCCEE
Confidence 4567777765444332 345654433222221 11 1 2269999999998875332 2 246666
Q ss_pred EEE-eeEeecCC
Q 006263 410 SVK-SGKVNDFS 420 (653)
Q Consensus 410 aik-~~rV~~f~ 420 (653)
.|. ..+...|.
T Consensus 78 ~VeGrL~~~~~~ 89 (168)
T 3afp_A 78 IVTGRLKQRSFE 89 (168)
T ss_dssp EEEEEEEEEEEC
T ss_pred EEEEEEEeeeEE
Confidence 665 45666675
No 156
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=21.68 E-value=40 Score=33.91 Aligned_cols=25 Identities=32% Similarity=0.834 Sum_probs=18.7
Q ss_pred cCCCCcCcccccceeee--cC--c--eeecccCcccc
Q 006263 512 ACPLMIGDRQCNKKVTQ--SG--N--RWQCDRCNQEI 542 (653)
Q Consensus 512 aC~~~~~~~~C~KKv~~--~~--~--~~~C~kC~~~~ 542 (653)
.|| .|+..+.. .+ + +|+|+.|++..
T Consensus 253 pC~------~CGt~I~~~~~g~~gRsTyfCp~~~~~~ 283 (287)
T 3w0f_A 253 NCD------QCHSKITVCRFGENSRMTYFCPHCQKHH 283 (287)
T ss_dssp BCT------TTCCBCEEECSSTTCCCEEECTTTSCC-
T ss_pred CCC------CCCCEEEEEEecCCCCCEEECCCccccc
Confidence 799 89987653 22 3 99999999863
No 157
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=21.27 E-value=49 Score=24.71 Aligned_cols=26 Identities=15% Similarity=0.470 Sum_probs=19.0
Q ss_pred cCCCCcCcccccc-eeeecC--ceeecccCccccC
Q 006263 512 ACPLMIGDRQCNK-KVTQSG--NRWQCDRCNQEID 543 (653)
Q Consensus 512 aC~~~~~~~~C~K-Kv~~~~--~~~~C~kC~~~~~ 543 (653)
.|| .|+. .++.+. +.+.|..|+..+.
T Consensus 13 ~Cp------~C~~~~lv~D~~~ge~vC~~CGlVl~ 41 (58)
T 1dl6_A 13 TCP------NHPDAILVEDYRAGDMICPECGLVVG 41 (58)
T ss_dssp SBT------TBSSSCCEECSSSCCEECTTTCCEEC
T ss_pred cCc------CCCCCceeEeCCCCeEEeCCCCCEEe
Confidence 699 8976 455432 3899999997653
No 158
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=20.94 E-value=85 Score=22.93 Aligned_cols=30 Identities=13% Similarity=0.310 Sum_probs=24.0
Q ss_pred EEEEeCCCeEEEEEechhhhhhhCCCHHHHHH
Q 006263 553 AQIQDQTGLTWVTAFQESGEEILGCPAKELYM 584 (653)
Q Consensus 553 ~~i~D~Tg~~~~~~F~~~ae~llG~sA~el~~ 584 (653)
+.+.|..|. ++.++..+++++|.+++++..
T Consensus 5 i~~~d~~g~--i~~~N~~~~~l~g~~~~~~~g 34 (96)
T 3a0s_A 5 IITLSKDGR--ITEWNKKAEQLFGLKKENVLG 34 (96)
T ss_dssp EEEEETTSB--EEEECHHHHHHHCCCHHHHTT
T ss_pred EEEEcCCCC--EeehhHHHHHHhCCCHHHhcC
Confidence 456787775 567899999999999998864
No 159
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=20.68 E-value=23 Score=28.06 Aligned_cols=22 Identities=32% Similarity=0.788 Sum_probs=16.9
Q ss_pred cCCCCcCcccccceeeecCceeecccCcccc
Q 006263 512 ACPLMIGDRQCNKKVTQSGNRWQCDRCNQEI 542 (653)
Q Consensus 512 aC~~~~~~~~C~KKv~~~~~~~~C~kC~~~~ 542 (653)
-|. .|+|||.-. .+.|. |+..+
T Consensus 27 RC~------~CrKkvgL~--gf~Cr-Cg~~F 48 (74)
T 1wfl_A 27 RCF------MCRKKVGLT--GFDCR-CGNLF 48 (74)
T ss_dssp BCS------SSCCBCGGG--CEECT-TSCEE
T ss_pred cCh------hhCCccccc--CeecC-CCCEe
Confidence 688 899998654 58888 88654
No 160
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}
Probab=20.49 E-value=3e+02 Score=25.80 Aligned_cols=35 Identities=3% Similarity=0.049 Sum_probs=21.7
Q ss_pred EEEEEEccc-hhhhhhhhHHHhhccCCCcEEEEE-eeEeecCC
Q 006263 380 SVELTLWGD-FCNKEGQKLQEMVDVGFFPVLSVK-SGKVNDFS 420 (653)
Q Consensus 380 ~i~vtLWg~-~A~~~~~~l~~~~~~~~~~Vvaik-~~rV~~f~ 420 (653)
-+.|++||+ .|+....+ + ..+..|.|. ..+.+.|.
T Consensus 75 wi~Vvawgk~lAe~~~~y----L--~KGs~V~VeGrL~trswe 111 (193)
T 3pgz_A 75 WHNIVIFNENLVKVVEQY----L--KKGSKIYIEGQLQTRKWQ 111 (193)
T ss_dssp EEEEEECCHHHHHHHHHH----C--CTTCEEEEEEEEEEEEEE
T ss_pred EEEEEEECHHHHHHHHhh----c--CCCCEEEEEEEEEEEEeE
Confidence 489999997 77653222 2 346666665 44666674
No 161
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=20.24 E-value=76 Score=25.18 Aligned_cols=30 Identities=17% Similarity=0.116 Sum_probs=24.3
Q ss_pred EEEEeCCCeEEEEEechhhhhhhCCCHHHHHH
Q 006263 553 AQIQDQTGLTWVTAFQESGEEILGCPAKELYM 584 (653)
Q Consensus 553 ~~i~D~Tg~~~~~~F~~~ae~llG~sA~el~~ 584 (653)
+.+.|..|. +..++..|++|+|.+.+++..
T Consensus 20 i~~~D~~g~--I~~~N~aa~~l~g~~~~~~~g 49 (115)
T 3b33_A 20 TLILDDGLA--IRYANPAAELLFSQSAKRIVE 49 (115)
T ss_dssp EEEECTTCB--EEEECHHHHHHTTSCHHHHTT
T ss_pred EEEECCCCc--EEEECHHHHHHhCCCHHHHhC
Confidence 456788874 567899999999999998753
Done!