Citrus Sinensis ID: 006263

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650---
MPVNLTPNSISLINGGDVNSKPLVQVMDIKLIGSTQERYRFLISDSVSTQHAMLATQLNDRVKTGQVKKGSVVQLIDYICSTVQNRKIIVVLNMETIILDCEPIGNPKIFSESELTAQKTIPSNNLPQPVRVNNYSAPNSGTFNLQNSGTFNSQNPGSFSTPNSGTFRAPNAGSIVRSFQPTVQPPYQPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKSFRK
ccccccHHHHHHHHccccccccEEEEEEEEEEcccccEEEEEEEcccHHHHHHccccccccccccccccccEEEEEEEEEEEccccEEEEEEEEEEEcccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEcccccccccccccEEEEEEEECccccEEEEEEcccHHHccccccccccEEEEcccEEcccccccccccccEEEEEccccEEEEcccccccccccccccccHHHHcccccccEEEEEEEEEECcccEEEEcccccEEEEEEEEEEcccccEEEEcccHHHHHHHHcccccccccccccEEEEcccEEEccccccccccccCEEEEccccHHHHHHHHHHHcccccccEEEcccccccccccccccHHHHHHHHccccccccccEEEEEEEEEEEEccccCECccccccccccccCEEEEcccCEEEccccccccccEEEEEEEEEEEEccccEEEEEEHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHcccEEEEEEEEEEEEEccEEEEEEEEEEEEcccHHHHHHHHHHHHHHHHHc
**VNLTPNSISLINGGDVNSKPLVQVMDIKLIGSTQERYRFLISDSVSTQHAMLATQLNDRVKTGQVKKGSVVQLIDYICSTVQNRKIIVVLNMETIILDCEPIGNPKI************************************************************************************************ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAA*************KNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKSF**
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MPVNLTPNSISLINGGDVNSKPLVQVMDIKLIGSTQERYRFLISDSVSTQHAMLATQLNDRVKTGQVKKGSVVQLIDYICSTVQNRKIIVVLNMETIILDCEPIGNPKIFSESELTAQKTIPSNNLPQPVRVNNYSAPNSGTFNLQNSGTFNSQNPGSFSTPNSGTFRAPNAGSIVRSFQPTVQPPYQPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKSFRK

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Replication protein A 70 kDa DNA-binding subunit Plays an essential role in several cellular processes in DNA metabolism including replication, recombination and DNA repair. Binds and subsequently stabilizes single-stranded DNA intermediates and thus prevents complementary DNA from reannealing.probableQ5ZJJ2
Replication protein A 70 kDa DNA-binding subunit Plays an essential role in several cellular processes in DNA metabolism including replication, recombination and DNA repair. Binds and subsequently stabilizes single-stranded DNA intermediates and thus prevents complementary DNA from reannealing.probableQ5FW17
Replication factor A protein 1 Binds to single-stranded sequences.probableQ92372

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 1JMC, chain A
Confidence level:very confident
Coverage over the Query: 207-453
View the alignment between query and template
View the model in PyMOL
Template: 1L1O, chain C
Confidence level:very confident
Coverage over the Query: 471-652
View the alignment between query and template
View the model in PyMOL
Template: 4GOP, chain C
Confidence level:very confident
Coverage over the Query: 208-651
View the alignment between query and template
View the model in PyMOL
Template: 2B29, chain A
Confidence level:very confident
Coverage over the Query: 3-111
View the alignment between query and template
View the model in PyMOL