Query 006267
Match_columns 653
No_of_seqs 245 out of 502
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 20:26:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006267.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006267hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 99.9 2.4E-27 8.3E-32 216.1 13.7 118 348-468 3-125 (130)
2 2l7p_A Histone-lysine N-methyl 99.7 4.9E-18 1.7E-22 150.7 2.8 61 587-648 22-86 (100)
3 2e61_A Zinc finger CW-type PWW 99.6 4.4E-17 1.5E-21 136.0 3.7 51 587-638 12-67 (69)
4 4i1k_A B3 domain-containing tr 99.6 1.1E-14 3.9E-19 135.5 12.2 98 355-460 45-143 (146)
5 1yel_A AT1G16640; CESG, protei 99.4 1E-12 3.5E-17 114.7 10.9 93 356-458 8-100 (104)
6 4gut_A Lysine-specific histone 93.9 0.0087 3E-07 68.3 -0.7 50 590-640 90-150 (776)
7 1na6_A Ecorii, restriction end 87.6 0.83 2.8E-05 49.2 6.8 91 356-446 18-123 (404)
8 1we9_A PHD finger family prote 83.2 0.6 2.1E-05 37.1 2.4 30 590-619 19-54 (64)
9 1wee_A PHD finger family prote 81.7 0.82 2.8E-05 37.4 2.7 28 591-618 29-61 (72)
10 3o70_A PHD finger protein 13; 76.7 1.7 5.7E-05 35.7 3.1 29 590-618 30-62 (68)
11 3kqi_A GRC5, PHD finger protei 76.6 1 3.6E-05 37.1 1.9 29 590-618 22-56 (75)
12 2k16_A Transcription initiatio 74.4 2.2 7.5E-05 34.8 3.3 29 590-618 30-63 (75)
13 3o7a_A PHD finger protein 13 v 73.8 2.1 7.3E-05 32.9 2.9 29 590-618 15-47 (52)
14 2kgg_A Histone demethylase jar 72.1 1.8 6.2E-05 33.4 2.1 31 588-618 13-49 (52)
15 2lv9_A Histone-lysine N-methyl 71.5 2.7 9.2E-05 36.5 3.3 32 588-619 37-72 (98)
16 3o27_A Putative uncharacterize 63.0 7.9 0.00027 32.5 4.2 42 418-459 22-63 (68)
17 2vpb_A Hpygo1, pygopus homolog 62.9 3.3 0.00011 33.7 2.0 16 588-603 19-35 (65)
18 1wep_A PHF8; structural genomi 56.8 4.3 0.00015 33.7 1.7 30 590-619 24-59 (79)
19 1wem_A Death associated transc 55.9 5.5 0.00019 32.6 2.2 15 590-604 27-41 (76)
20 3lqh_A Histone-lysine N-methyl 50.6 6.8 0.00023 37.8 2.2 56 58-120 4-65 (183)
21 1wew_A DNA-binding family prot 49.7 18 0.00062 29.9 4.4 31 589-619 26-68 (78)
22 2rsd_A E3 SUMO-protein ligase 40.9 19 0.00063 29.1 3.0 30 589-618 20-60 (68)
23 2lo3_A SAGA-associated factor 38.6 11 0.00038 29.2 1.2 16 77-92 13-28 (44)
24 3kv5_D JMJC domain-containing 38.1 7 0.00024 42.8 0.2 29 590-618 49-83 (488)
25 2ri7_A Nucleosome-remodeling f 37.5 12 0.00041 34.6 1.6 30 590-619 20-55 (174)
26 2vb2_X Copper protein, cation 34.4 26 0.0009 29.9 3.1 26 432-457 59-85 (88)
27 2qcp_X Cation efflux system pr 33.6 28 0.00095 29.2 3.1 26 432-457 51-77 (80)
28 3lqh_A Histone-lysine N-methyl 31.4 17 0.00058 35.1 1.6 15 591-605 19-33 (183)
29 2k75_A Uncharacterized protein 29.1 1.1E+02 0.0037 26.5 6.2 46 394-460 40-88 (106)
30 2xb1_A Pygopus homolog 2, B-ce 28.1 25 0.00086 30.8 2.0 15 590-604 16-31 (105)
31 2ku7_A MLL1 PHD3-CYP33 RRM chi 27.1 15 0.0005 31.5 0.3 11 593-603 2-12 (140)
32 3mhs_E SAGA-associated factor 24.6 21 0.0007 31.8 0.7 13 79-91 73-85 (96)
33 4dok_A Similarity to chalcone- 24.1 61 0.0021 31.7 4.1 38 424-461 127-164 (208)
34 2g6q_A Inhibitor of growth pro 22.1 49 0.0017 26.5 2.4 28 591-618 22-55 (62)
35 1wen_A Inhibitor of growth fam 21.7 48 0.0016 27.3 2.4 29 591-619 27-61 (71)
36 3c6w_A P28ING5, inhibitor of g 21.2 53 0.0018 26.0 2.4 28 591-618 20-53 (59)
37 1mvf_D MAZE protein, PEMI-like 20.7 73 0.0025 26.1 3.3 28 427-456 19-46 (82)
38 2l55_A SILB,silver efflux prot 20.2 70 0.0024 27.0 3.1 28 432-459 45-74 (82)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.95 E-value=2.4e-27 Score=216.09 Aligned_cols=118 Identities=39% Similarity=0.730 Sum_probs=100.7
Q ss_pred cCCCCCcccceEEEecccccCCCCCcEEeehhhhhhcCCCCCC---CCCceEEEEeCCCCeEEEEEEEeCCCCCcceecc
Q 006267 348 SGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQ---PEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLE 424 (653)
Q Consensus 348 sgd~ns~~~~LF~KvLT~SDVgklgRLVIPK~~AEa~FPpL~~---~~G~~L~v~D~~Gk~W~Frfs~w~Nn~SR~YVL~ 424 (653)
++..+.+..++|.|+||+|||++.+||+||+++|++|||.++. .+++.|.++|.+|++|+|+|+|| +.+++|+|+
T Consensus 3 ~~~~~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~--~~~~~~~Lt 80 (130)
T 1wid_A 3 SGSSGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYW--NSSQSYVLT 80 (130)
T ss_dssp -----CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEE--TTTTEEEEE
T ss_pred CCCCCCCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEE--CCCCceEEc
Confidence 3556667789999999999999889999999999999999874 57899999999999999999999 667889985
Q ss_pred -CchhhhhccCCCCCCEEEEEEec-CCCeEEEEEEeCCCCCCccch
Q 006267 425 -GVTPCIQNMQLQAGDIVTFSRLE-PEGKLVMGFRKASSASASDQD 468 (653)
Q Consensus 425 -GWs~FVrsK~LqaGDtVvF~R~e-~~GkL~IGVRRa~~~~~s~q~ 468 (653)
||..||++|+|++||+|+|++.+ .+++|+|++||+.... ++|.
T Consensus 81 ~GW~~FV~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~-~~~~ 125 (130)
T 1wid_A 81 KGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD-LDAS 125 (130)
T ss_dssp SSHHHHHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS-SCC-
T ss_pred CChHHHHHHcCCCCCCEEEEEEecCCCcEEEEEEEECCCCC-cccc
Confidence 99999999999999999999987 3468999999998654 3443
No 2
>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana}
Probab=99.69 E-value=4.9e-18 Score=150.66 Aligned_cols=61 Identities=25% Similarity=0.519 Sum_probs=54.9
Q ss_pred CCCCCceEecCCCccccccCCCC----CCCCCceeecCCCCCCCCCCCCccccChhhhhhccCcee
Q 006267 587 VGEKIQWVQCEDCSKWRKVPANA----RLPSKWTCSGNLWDPERYNQHLVICLNPDIFIYLPRLRI 648 (653)
Q Consensus 587 ~ge~~~WVQCD~C~KWRrLP~~~----~lP~kW~CsmN~WDp~~~sCsaPEE~~~~~i~~Lp~~~~ 648 (653)
..+.++|||||.|+|||+||.++ .+|++|+|+||+ |+.+++|++|||+.+++|+.+.++.-
T Consensus 22 ~~~~~~WVQCD~C~KWRrLP~~~~~~~~~pd~W~C~mN~-D~~~nsCs~PEE~~~~ei~~~l~~~~ 86 (100)
T 2l7p_A 22 YSTESAWVRCDDCFKWRRIPASVVGSIDESSRWICMNNS-DKRFADCSKSQEMSNEEINEELGIGQ 86 (100)
T ss_dssp CSSSSEEEECTTTCCEEEECHHHHTTSTTSSCCCGGGSS-CSSSCSTTSCCSSCHHHHHHHHTCCC
T ss_pred CCCCCeEEeeCCCCccccCChhHccccCCCCCceeCCCC-CCCCCCCCCccCCCHHHHHHHhcccc
Confidence 34578999999999999999864 479999999998 99999999999999999999988754
No 3
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A*
Probab=99.65 E-value=4.4e-17 Score=135.97 Aligned_cols=51 Identities=31% Similarity=0.722 Sum_probs=46.2
Q ss_pred CCCCCceEecC--CCccccccCCCC---CCCCCceeecCCCCCCCCCCCCccccChh
Q 006267 587 VGEKIQWVQCE--DCSKWRKVPANA---RLPSKWTCSGNLWDPERYNQHLVICLNPD 638 (653)
Q Consensus 587 ~ge~~~WVQCD--~C~KWRrLP~~~---~lP~kW~CsmN~WDp~~~sCsaPEE~~~~ 638 (653)
.++..+||||| .|+|||+||..+ .+|++|+|+||+ |+.+++|++|||..++
T Consensus 12 ~~~~~~WVQCd~p~C~KWR~LP~~~~~~~lpd~W~C~mN~-d~~~~~Cs~pEE~~~~ 67 (69)
T 2e61_A 12 FGQCLVWVQCSFPNCGKWRRLCGNIDPSVLPDNWSCDQNT-DVQYNRCDIPEETWTG 67 (69)
T ss_dssp CCCCCCEEECSSTTTCCEEECCSSCCTTTSCTTCCGGGCS-CGGGCSSSSCCCCCCC
T ss_pred CCCCCeEEEeCccccCcccCCccccccccCCCcCEeCCCC-CCccCCCCCCcccCCC
Confidence 46788999999 999999999985 689999999999 9999999999998653
No 4
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.57 E-value=1.1e-14 Score=135.50 Aligned_cols=98 Identities=24% Similarity=0.288 Sum_probs=82.9
Q ss_pred ccceEEEecccccCCCCCcEEeehhhhhhcCCCCCCCCCceEEEEeCCCCeEEEEEEEeCCCCCcceeccCchhhhhccC
Q 006267 355 ITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQ 434 (653)
Q Consensus 355 ~~~LF~KvLT~SDVgklgRLVIPK~~AEa~FPpL~~~~G~~L~v~D~~Gk~W~Frfs~w~Nn~SR~YVL~GWs~FVrsK~ 434 (653)
-.+.|.|+||+|||.+..+|.||++.++.|||.. ...|.++|. |+.|.+++.|+ + +++++..||..||++++
T Consensus 45 ~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~----~~~i~L~~~-gk~W~v~~~~~--~-~~~~ls~GW~~Fv~dn~ 116 (146)
T 4i1k_A 45 TNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGI----SGFIKVQLA-EKQWPVRCLYK--A-GRAKFSQGWYEFTLENN 116 (146)
T ss_dssp SSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTC----CSEEEEEET-TEEEEEEEEEE--T-TEEEECTTHHHHHHHTT
T ss_pred CCCEEEEEECchhcCCCcEEEeCHHHHHHhCCCC----CeEEEEEEC-CcEEEEEEEEe--C-CcEEECCchHHHHHHcC
Confidence 3479999999999997678999999999999974 468888998 69999999998 3 35555579999999999
Q ss_pred CCCCCEEEEEEecCCC-eEEEEEEeCC
Q 006267 435 LQAGDIVTFSRLEPEG-KLVMGFRKAS 460 (653)
Q Consensus 435 LqaGDtVvF~R~e~~G-kL~IGVRRa~ 460 (653)
|++||+|+|...+... .|.|.+-|+.
T Consensus 117 L~~GD~cvFeli~~~~~~f~V~IfR~~ 143 (146)
T 4i1k_A 117 LGEGDVCVFELLRTRDFVLKVTAFRVN 143 (146)
T ss_dssp CCTTCEEEEEECSSSSCEEEEEEECCC
T ss_pred CCCCCEEEEEEecCCceEEEEEEEecc
Confidence 9999999999987433 5778877764
No 5
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.41 E-value=1e-12 Score=114.71 Aligned_cols=93 Identities=14% Similarity=0.297 Sum_probs=75.9
Q ss_pred cceEEEecccccCCCCCcEEeehhhhhhcCCCCCCCCCceEEEEeCCCCeEEEEEEEeCCCCCcceeccCchhhhhccCC
Q 006267 356 TPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQL 435 (653)
Q Consensus 356 ~~LF~KvLT~SDVgklgRLVIPK~~AEa~FPpL~~~~G~~L~v~D~~Gk~W~Frfs~w~Nn~SR~YVL~GWs~FVrsK~L 435 (653)
.+.|.|+|+++|.. .+|.||++.++.+.+.+ +..+.++|..|+.|.+++.++ + .+.++..||..||++++|
T Consensus 8 ~p~F~K~l~~~~~~--~~L~IP~~F~~~~~~~~----~~~v~L~~~~G~~W~v~~~~~--~-~~~~l~~GW~~Fv~~~~L 78 (104)
T 1yel_A 8 EVQFMKPFISEKSS--KSLEIPLGFNEYFPAPF----PITVDLLDYSGRSWTVRMKKR--G-EKVFLTVGWENFVKDNNL 78 (104)
T ss_dssp CEEEEEECCHHHHT--TCEECCHHHHTTCCCCC----CSEEEEEETTSCEEEEEEEEE--T-TEEEECTTHHHHHHHHTC
T ss_pred CCCEEEEECCCCcc--ceEECCHHHHHhcCccC----CCEEEEECCCCCEEEEEEEEE--C-CcEEEccChHHHHHHcCC
Confidence 36899999999943 69999999998776553 458999999999999999987 2 344444699999999999
Q ss_pred CCCCEEEEEEecCCCeEEEEEEe
Q 006267 436 QAGDIVTFSRLEPEGKLVMGFRK 458 (653)
Q Consensus 436 qaGDtVvF~R~e~~GkL~IGVRR 458 (653)
++||.|+|.... +..+.|-+=+
T Consensus 79 ~~GD~lvF~~~~-~~~f~V~If~ 100 (104)
T 1yel_A 79 EDGKYLQFIYDR-DRTFYVIIYG 100 (104)
T ss_dssp CTTCEEEEEECS-SSEEEEEEEC
T ss_pred CCCCEEEEEEcC-CCeEEEEEEC
Confidence 999999998864 6677766544
No 6
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=93.86 E-value=0.0087 Score=68.30 Aligned_cols=50 Identities=22% Similarity=0.468 Sum_probs=38.9
Q ss_pred CCceEecC--CCccccccCCCC----CCCCCceeecCCCCC-----CCCCCCCccccChhhh
Q 006267 590 KIQWVQCE--DCSKWRKVPANA----RLPSKWTCSGNLWDP-----ERYNQHLVICLNPDIF 640 (653)
Q Consensus 590 ~~~WVQCD--~C~KWRrLP~~~----~lP~kW~CsmN~WDp-----~~~sCsaPEE~~~~~i 640 (653)
-+-|+||- .|+|||+||... ..+.+.+|.|-. +. .-..|+.||++-..+.
T Consensus 90 l~~~~~c~~~~c~~~~~~~~~~~~~~~~~~~~~c~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 150 (776)
T 4gut_A 90 LPYWVQCTKPECRKWRQLTKEIQLTPQIAKTYRCGMKP-NTAIKPETSDHCSLPEDLRVLEV 150 (776)
T ss_dssp SCCEEECCCTTTCCEEECCTTCCCCHHHHHHCCTTCCC-C-------CCGGGSCCCHHHHHT
T ss_pred CcHhhhcCcccccchhhCCCcCCCChhhhheeeccCcc-CcccccccCCCCCCCcccchhhc
Confidence 37999999 999999999886 457899998864 22 3567999999755553
No 7
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=87.62 E-value=0.83 Score=49.25 Aligned_cols=91 Identities=15% Similarity=0.155 Sum_probs=64.3
Q ss_pred cceEEEecccccCCC----CCcEEeehhhhhhcCCCCCCC---C-CceEEE--EeCCCCeEEEEEEEeCC----CCCcce
Q 006267 356 TPLFEKMLSASDAGR----IGRLVLPKKCAEAYFPPISQP---E-GLPLKV--QDSKGKEWIFQFRFWPN----NNSRMY 421 (653)
Q Consensus 356 ~~LF~KvLT~SDVgk----lgRLVIPK~~AEa~FPpL~~~---~-G~~L~v--~D~~Gk~W~Frfs~w~N----n~SR~Y 421 (653)
...|.|.|++.|++. ...+.+||..++.+||.|... + .+.+.+ -|...-.+.++++|+-| ..+..|
T Consensus 18 ~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~~tRnEy 97 (404)
T 1na6_A 18 YFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNEK 97 (404)
T ss_dssp EEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCCCEE
T ss_pred chheeEEcccccCCCCCCcccccCCchHHHHHhcccCCCccccCCcceeEEEeccCCCceEEEEEEEecccccCCCCCce
Confidence 478999999999995 358999998789999988721 2 233332 33433455999998821 133468
Q ss_pred eccCch-hhhhccCCCCCCEEEEEEe
Q 006267 422 VLEGVT-PCIQNMQLQAGDIVTFSRL 446 (653)
Q Consensus 422 VL~GWs-~FVrsK~LqaGDtVvF~R~ 446 (653)
-|+.|. .+.=.....+||.++|-+.
T Consensus 98 RLt~~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 98 RITRWGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp EEECCCTTSGGGCGGGTTCEEEEEEE
T ss_pred EEeecCCCCcccccCCCCCEEEEEEe
Confidence 888774 4555688899999998776
No 8
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=83.17 E-value=0.6 Score=37.10 Aligned_cols=30 Identities=20% Similarity=0.589 Sum_probs=20.6
Q ss_pred CCceEecCCCccccccCCC------CCCCCCceeec
Q 006267 590 KIQWVQCEDCSKWRKVPAN------ARLPSKWTCSG 619 (653)
Q Consensus 590 ~~~WVQCD~C~KWRrLP~~------~~lP~kW~Csm 619 (653)
...|||||.|..|=-..=- +..++.|+|..
T Consensus 19 ~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~ 54 (64)
T 1we9_A 19 DEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPS 54 (64)
T ss_dssp SSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHH
T ss_pred CCCEEEccCCCCCCCccccCcChhHhcCCCcEECCC
Confidence 4689999999999443211 12367898864
No 9
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=81.68 E-value=0.82 Score=37.42 Aligned_cols=28 Identities=32% Similarity=0.831 Sum_probs=20.0
Q ss_pred CceEecCCCccccccCC---C--CCCCCCceee
Q 006267 591 IQWVQCEDCSKWRKVPA---N--ARLPSKWTCS 618 (653)
Q Consensus 591 ~~WVQCD~C~KWRrLP~---~--~~lP~kW~Cs 618 (653)
..|||||.|..|--+.= . ...|+.|+|.
T Consensus 29 ~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~ 61 (72)
T 1wee_A 29 ERMLACDGCGVWHHTRCIGINNADALPSKFLCF 61 (72)
T ss_dssp SCEEECSSSCEEEETTTTTCCTTSCCCSCCCCH
T ss_pred CcEEECCCCCCccCCeeeccCccccCCCcEECC
Confidence 47999999999954321 1 1357889985
No 10
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=76.72 E-value=1.7 Score=35.67 Aligned_cols=29 Identities=17% Similarity=0.741 Sum_probs=20.9
Q ss_pred CCceEecCCCccccccCCC---C-CCCCCceee
Q 006267 590 KIQWVQCEDCSKWRKVPAN---A-RLPSKWTCS 618 (653)
Q Consensus 590 ~~~WVQCD~C~KWRrLP~~---~-~lP~kW~Cs 618 (653)
...+||||.|..|--+.=- . ..|+.|+|.
T Consensus 30 ~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~ 62 (68)
T 3o70_A 30 GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQ 62 (68)
T ss_dssp TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCH
T ss_pred CCCEEECCCCCccccccccCcCcccCCCcEECC
Confidence 4579999999999643221 1 467899985
No 11
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=76.60 E-value=1 Score=37.11 Aligned_cols=29 Identities=21% Similarity=0.567 Sum_probs=19.9
Q ss_pred CCceEecCCCccccc-----cCCC-CCCCCCceee
Q 006267 590 KIQWVQCEDCSKWRK-----VPAN-ARLPSKWTCS 618 (653)
Q Consensus 590 ~~~WVQCD~C~KWRr-----LP~~-~~lP~kW~Cs 618 (653)
...|||||.|..|=- |... +...+.|+|.
T Consensus 22 ~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~ 56 (75)
T 3kqi_A 22 TRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCP 56 (75)
T ss_dssp TSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCH
T ss_pred CCCEEEcCCCCCCEecccccccccccCCCCEEECC
Confidence 468999999999943 2222 2345789884
No 12
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=74.43 E-value=2.2 Score=34.83 Aligned_cols=29 Identities=24% Similarity=0.731 Sum_probs=20.3
Q ss_pred CCceEecCCCcccc-----ccCCCCCCCCCceee
Q 006267 590 KIQWVQCEDCSKWR-----KVPANARLPSKWTCS 618 (653)
Q Consensus 590 ~~~WVQCD~C~KWR-----rLP~~~~lP~kW~Cs 618 (653)
...||+||.|..|= .++......+.|+|.
T Consensus 30 ~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~ 63 (75)
T 2k16_A 30 GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCP 63 (75)
T ss_dssp SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCT
T ss_pred CCCEEEcCCCCcccccccCCCCccCCCCCCEECh
Confidence 45899999999995 233333334789995
No 13
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=73.78 E-value=2.1 Score=32.94 Aligned_cols=29 Identities=17% Similarity=0.759 Sum_probs=20.9
Q ss_pred CCceEecCCCccccccCCC----CCCCCCceee
Q 006267 590 KIQWVQCEDCSKWRKVPAN----ARLPSKWTCS 618 (653)
Q Consensus 590 ~~~WVQCD~C~KWRrLP~~----~~lP~kW~Cs 618 (653)
...+||||.|..|--+.=- ...|+.|+|.
T Consensus 15 ~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~ 47 (52)
T 3o7a_A 15 GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQ 47 (52)
T ss_dssp TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCH
T ss_pred CCCEEEcCCCCccccccccCCCcccCCCcEECc
Confidence 4589999999999654322 1457888884
No 14
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=72.09 E-value=1.8 Score=33.40 Aligned_cols=31 Identities=26% Similarity=0.784 Sum_probs=20.5
Q ss_pred CCCCceEecC-CCccccccCCC-C----CCCCCceee
Q 006267 588 GEKIQWVQCE-DCSKWRKVPAN-A----RLPSKWTCS 618 (653)
Q Consensus 588 ge~~~WVQCD-~C~KWRrLP~~-~----~lP~kW~Cs 618 (653)
.+...||||| .|.+|=-+.=- + ..+++|+|.
T Consensus 13 ~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~ 49 (52)
T 2kgg_A 13 KDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICI 49 (52)
T ss_dssp CTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCS
T ss_pred CCCCcEEEeCCCCCccCcccccCCCccccCCCCEECC
Confidence 3457899999 89999554322 1 124788874
No 15
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=71.51 E-value=2.7 Score=36.50 Aligned_cols=32 Identities=19% Similarity=0.692 Sum_probs=23.2
Q ss_pred CCCCceEecCCCccccccCC----CCCCCCCceeec
Q 006267 588 GEKIQWVQCEDCSKWRKVPA----NARLPSKWTCSG 619 (653)
Q Consensus 588 ge~~~WVQCD~C~KWRrLP~----~~~lP~kW~Csm 619 (653)
.+...+||||.|.+|--+.= ....|+.|+|..
T Consensus 37 ~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~ 72 (98)
T 2lv9_A 37 HDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCER 72 (98)
T ss_dssp SCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTT
T ss_pred cCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCC
Confidence 34568999999999965421 125688999964
No 16
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=63.03 E-value=7.9 Score=32.52 Aligned_cols=42 Identities=10% Similarity=0.304 Sum_probs=34.9
Q ss_pred CcceeccCchhhhhccCCCCCCEEEEEEecCCCeEEEEEEeC
Q 006267 418 SRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKA 459 (653)
Q Consensus 418 SR~YVL~GWs~FVrsK~LqaGDtVvF~R~e~~GkL~IGVRRa 459 (653)
+..|.++==.+++++.+++.||.+.+.-++.+|++++..+|-
T Consensus 22 ~etyYInIPaeI~kaLgIk~gD~fel~ve~kdgeIvLcykRV 63 (68)
T 3o27_A 22 HTTFYLLIPKDIAEALDIKPDDTFILNMEQKDGDIVLSYKRV 63 (68)
T ss_dssp CCCEEEEECHHHHHHTTCCTTCCEEEEEEEETTEEEEEEEEC
T ss_pred ceEEEEeCcHHHHHHhCCCCCCEEEEEEecCCCeEEEEehhh
Confidence 344666555799999999999999998877799999999984
No 17
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=62.86 E-value=3.3 Score=33.75 Aligned_cols=16 Identities=31% Similarity=0.875 Sum_probs=13.3
Q ss_pred CCCCceEecC-CCcccc
Q 006267 588 GEKIQWVQCE-DCSKWR 603 (653)
Q Consensus 588 ge~~~WVQCD-~C~KWR 603 (653)
.....||||| .|.+|=
T Consensus 19 ~~~~~mI~CD~~C~~Wf 35 (65)
T 2vpb_A 19 NDDQDAILCEASCQKWF 35 (65)
T ss_dssp CTTSCEEEBTTTTCCEE
T ss_pred CCCCCeEecccCccccC
Confidence 3467999999 999993
No 18
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=56.81 E-value=4.3 Score=33.69 Aligned_cols=30 Identities=17% Similarity=0.374 Sum_probs=20.6
Q ss_pred CCceEecCCCcccccc---CCC---CCCCCCceeec
Q 006267 590 KIQWVQCEDCSKWRKV---PAN---ARLPSKWTCSG 619 (653)
Q Consensus 590 ~~~WVQCD~C~KWRrL---P~~---~~lP~kW~Csm 619 (653)
...|||||.|..|=-. ... ...++.|+|..
T Consensus 24 ~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~ 59 (79)
T 1wep_A 24 NHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPD 59 (79)
T ss_dssp SSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTT
T ss_pred CCceEEcCCCCCcEEeeecCcccccccCCCeEECCC
Confidence 5689999999999331 111 13468999964
No 19
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=55.86 E-value=5.5 Score=32.64 Aligned_cols=15 Identities=20% Similarity=0.753 Sum_probs=12.5
Q ss_pred CCceEecCCCccccc
Q 006267 590 KIQWVQCEDCSKWRK 604 (653)
Q Consensus 590 ~~~WVQCD~C~KWRr 604 (653)
...|||||.|..|--
T Consensus 27 ~~~MI~Cd~C~~WfH 41 (76)
T 1wem_A 27 NRFMICCDRCEEWFH 41 (76)
T ss_dssp SSCEEECSSSCCEEE
T ss_pred CCCEEEeCCCCCcEe
Confidence 458999999999943
No 20
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=50.55 E-value=6.8 Score=37.82 Aligned_cols=56 Identities=20% Similarity=0.605 Sum_probs=43.9
Q ss_pred hh-hccccccccccccccccCCCCccccccCCCceeechhhh-hhhhhhhc----cCCcceeccccccc
Q 006267 58 LC-VYRSIYEEGRFCDTFHVNASGWRCCESCGKRVHCGCITS-VHAFTLLD----AGGIECMTCARKNV 120 (653)
Q Consensus 58 lc-~c~sayE~~~fCe~FH~~~sGWR~C~~C~KrlHCGCI~S-~~~~~lLD----~GGv~C~~C~~~s~ 120 (653)
.| .|+..|..+.| ++-|-.|..|..-+|--|+-- ...+++++ ...-.|..|.++..
T Consensus 4 ~CpiC~k~Y~~~~~-------~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 4 FCPLCDKCYDDDDY-------ESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp BCTTTCCBCTTCCT-------TCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred cCCCCcCccCCccc-------CCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 57 78888888765 567999999999999999843 34466774 34779999998764
No 21
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=49.72 E-value=18 Score=29.92 Aligned_cols=31 Identities=32% Similarity=0.814 Sum_probs=21.6
Q ss_pred CCCceEecC--CCccccc-----cCCCC-----CCCCCceeec
Q 006267 589 EKIQWVQCE--DCSKWRK-----VPANA-----RLPSKWTCSG 619 (653)
Q Consensus 589 e~~~WVQCD--~C~KWRr-----LP~~~-----~lP~kW~Csm 619 (653)
+...+|||| .|..|-- |+... ..+++|+|..
T Consensus 26 ~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~ 68 (78)
T 1wew_A 26 ETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEI 68 (78)
T ss_dssp CCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHH
T ss_pred CCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCC
Confidence 456899999 9999964 22221 4578999853
No 22
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=40.91 E-value=19 Score=29.10 Aligned_cols=30 Identities=30% Similarity=0.774 Sum_probs=20.8
Q ss_pred CCCceEecCC--CccccccCCC---------CCCCCCceee
Q 006267 589 EKIQWVQCED--CSKWRKVPAN---------ARLPSKWTCS 618 (653)
Q Consensus 589 e~~~WVQCD~--C~KWRrLP~~---------~~lP~kW~Cs 618 (653)
+...+||||. |..|--..=- ...|++|+|.
T Consensus 20 ~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~ 60 (68)
T 2rsd_A 20 VNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCE 60 (68)
T ss_dssp CCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCH
T ss_pred CCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECc
Confidence 3458999994 9999753321 1457789995
No 23
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=38.58 E-value=11 Score=29.20 Aligned_cols=16 Identities=38% Similarity=0.910 Sum_probs=13.2
Q ss_pred CCCCccccccCCCcee
Q 006267 77 NASGWRCCESCGKRVH 92 (653)
Q Consensus 77 ~~sGWR~C~~C~KrlH 92 (653)
+..-+|.|++|||+|-
T Consensus 13 ~~~~YRvC~~CgkPi~ 28 (44)
T 2lo3_A 13 KPIQYRVCEKCGKPLA 28 (44)
T ss_dssp CCCCEEECTTTCCEEE
T ss_pred ccccchhhcccCCcch
Confidence 4567899999999873
No 24
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=38.10 E-value=7 Score=42.81 Aligned_cols=29 Identities=21% Similarity=0.526 Sum_probs=20.2
Q ss_pred CCceEecCCCccccc-----cCCC-CCCCCCceee
Q 006267 590 KIQWVQCEDCSKWRK-----VPAN-ARLPSKWTCS 618 (653)
Q Consensus 590 ~~~WVQCD~C~KWRr-----LP~~-~~lP~kW~Cs 618 (653)
...|||||.|..|=- |... ...++.|+|.
T Consensus 49 ~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~ 83 (488)
T 3kv5_D 49 NRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCP 83 (488)
T ss_dssp TSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCH
T ss_pred CCCeEEccCCCCceeeeecCcCcccccCCCEEECC
Confidence 568999999999943 2221 2446789994
No 25
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=37.52 E-value=12 Score=34.61 Aligned_cols=30 Identities=23% Similarity=0.666 Sum_probs=20.8
Q ss_pred CCceEecCCCccccc---cCCC---CCCCCCceeec
Q 006267 590 KIQWVQCEDCSKWRK---VPAN---ARLPSKWTCSG 619 (653)
Q Consensus 590 ~~~WVQCD~C~KWRr---LP~~---~~lP~kW~Csm 619 (653)
...|||||.|..|=- +... ...++.|+|..
T Consensus 20 ~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~ 55 (174)
T 2ri7_A 20 SKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQ 55 (174)
T ss_dssp TSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHH
T ss_pred CCCEeECCCCCchhChhhcCCchhhccCccCeecCC
Confidence 457999999999933 2211 24578999864
No 26
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=34.38 E-value=26 Score=29.95 Aligned_cols=26 Identities=15% Similarity=0.360 Sum_probs=19.3
Q ss_pred ccCCCCCCEEEEEEecCCCeEEE-EEE
Q 006267 432 NMQLQAGDIVTFSRLEPEGKLVM-GFR 457 (653)
Q Consensus 432 sK~LqaGDtVvF~R~e~~GkL~I-GVR 457 (653)
-.+|++||.|.|.-...+|.|.| .++
T Consensus 59 l~~lk~Gd~V~F~~~~~~~~~~it~i~ 85 (88)
T 2vb2_X 59 MSEIKTGDKVAFNFVQQGNLSLLQDIK 85 (88)
T ss_dssp ECCCCTTCEEEEEEEEETTEEEEEEEE
T ss_pred hhcCCCCCEEEEEEEEeCCEEEEEEEE
Confidence 47899999999977665666665 443
No 27
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=33.64 E-value=28 Score=29.23 Aligned_cols=26 Identities=15% Similarity=0.360 Sum_probs=19.1
Q ss_pred ccCCCCCCEEEEEEecCCCeEEE-EEE
Q 006267 432 NMQLQAGDIVTFSRLEPEGKLVM-GFR 457 (653)
Q Consensus 432 sK~LqaGDtVvF~R~e~~GkL~I-GVR 457 (653)
-.+|++||.|.|.-...+|.|.| .++
T Consensus 51 l~~lk~Gd~V~F~~~~~~~~~~it~i~ 77 (80)
T 2qcp_X 51 MSEIKTGDKVAFNFVQQGNLSLLQDIK 77 (80)
T ss_dssp ECCCCTTCEEEEEEEEETTEEEEEEEE
T ss_pred hhcCCCCCEEEEEEEEeCCEEEEEEEE
Confidence 47899999999977665666655 443
No 28
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=31.36 E-value=17 Score=35.07 Aligned_cols=15 Identities=27% Similarity=0.904 Sum_probs=12.6
Q ss_pred CceEecCCCcccccc
Q 006267 591 IQWVQCEDCSKWRKV 605 (653)
Q Consensus 591 ~~WVQCD~C~KWRrL 605 (653)
..|||||.|..|=-.
T Consensus 19 ~~MIqCd~C~~W~H~ 33 (183)
T 3lqh_A 19 SKMMQCGKCDRWVHS 33 (183)
T ss_dssp CCEEECTTTCCEEEG
T ss_pred CCeEECCCCCcccch
Confidence 369999999999754
No 29
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=29.05 E-value=1.1e+02 Score=26.53 Aligned_cols=46 Identities=17% Similarity=0.276 Sum_probs=33.4
Q ss_pred ceEEEEeCCCCeEEEEEEEeCCCCCcceeccCchhhhhccCCCCCCEEEEEEe---cCCCeEEEEEEeCC
Q 006267 394 LPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRL---EPEGKLVMGFRKAS 460 (653)
Q Consensus 394 ~~L~v~D~~Gk~W~Frfs~w~Nn~SR~YVL~GWs~FVrsK~LqaGDtVvF~R~---e~~GkL~IGVRRa~ 460 (653)
..+.+.|.+| +.+++.| ++. |++||+|.+... .-+|++.+.+-|..
T Consensus 40 ~~~~l~DeTG---~I~~tlW--~~~----------------l~~Gdvv~i~ng~v~~~~g~~~L~v~~~~ 88 (106)
T 2k75_A 40 YQGYIEDDTA---RIRISSF--GKQ----------------LQDSDVVRIDNARVAQFNGYLSLSVGDSS 88 (106)
T ss_dssp EEEEEECSSC---EEEEEEE--SSC----------------CCTTEEEEEEEEEEEEETTEEEEEECTTS
T ss_pred EEEEEEcCCC---eEEEEEE--cCc----------------cCCCCEEEEEeeEEeEECCEEEEEECCcE
Confidence 4688999999 6889999 332 999999998732 24676666665543
No 30
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=28.14 E-value=25 Score=30.82 Aligned_cols=15 Identities=33% Similarity=0.877 Sum_probs=12.2
Q ss_pred CCceEecC-CCccccc
Q 006267 590 KIQWVQCE-DCSKWRK 604 (653)
Q Consensus 590 ~~~WVQCD-~C~KWRr 604 (653)
...||||| .|..|=-
T Consensus 16 ~~~mi~Cdd~C~~WfH 31 (105)
T 2xb1_A 16 DQDAILCEASCQKWFH 31 (105)
T ss_dssp TSCEEECTTTTCCEEE
T ss_pred CCCEEEecCCcccccc
Confidence 45799998 8999943
No 31
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=27.08 E-value=15 Score=31.53 Aligned_cols=11 Identities=36% Similarity=1.253 Sum_probs=9.7
Q ss_pred eEecCCCcccc
Q 006267 593 WVQCEDCSKWR 603 (653)
Q Consensus 593 WVQCD~C~KWR 603 (653)
.||||.|..|=
T Consensus 2 mi~c~~c~~w~ 12 (140)
T 2ku7_A 2 MMQCGKCDRWV 12 (140)
T ss_dssp CCCCSCCSSCH
T ss_pred ccccccCCCcc
Confidence 58999999993
No 32
>3mhs_E SAGA-associated factor 73; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_E 4fip_D 4fjc_D 4fk5_E 3m99_D
Probab=24.60 E-value=21 Score=31.81 Aligned_cols=13 Identities=46% Similarity=1.112 Sum_probs=11.7
Q ss_pred CCccccccCCCce
Q 006267 79 SGWRCCESCGKRV 91 (653)
Q Consensus 79 sGWR~C~~C~Krl 91 (653)
.-.|-|+.|||+|
T Consensus 73 ~~YRvCn~CGkPI 85 (96)
T 3mhs_E 73 IQYRVCEKCGKPL 85 (96)
T ss_dssp CCCEEETTTCCEE
T ss_pred ccchhhhccCCce
Confidence 5689999999997
No 33
>4dok_A Similarity to chalcone-flavonone isomerase; chalcone-isomerase like protein, chalcone-isomerase like FOL isomerase; 1.70A {Arabidopsis thaliana}
Probab=24.06 E-value=61 Score=31.70 Aligned_cols=38 Identities=21% Similarity=0.356 Sum_probs=31.0
Q ss_pred cCchhhhhccCCCCCCEEEEEEecCCCeEEEEEEeCCC
Q 006267 424 EGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASS 461 (653)
Q Consensus 424 ~GWs~FVrsK~LqaGDtVvF~R~e~~GkL~IGVRRa~~ 461 (653)
.....+.+++.|+.||+|.|.+..+.|.|.|.+.+...
T Consensus 127 ~~f~~~F~~~~~~~G~~I~~~~~p~~G~L~i~~s~~G~ 164 (208)
T 4dok_A 127 EKVVGFFQSKYFKANSVITYHFSAKDGICEIGFETEGK 164 (208)
T ss_dssp HHHHHHHHTCEECTTCEEEEEECSSSCCEEEEEECTTS
T ss_pred HHHHHHhccCCCCCCCEEEEEEeCCCCeEEEEEEeCCE
Confidence 35566778889999999999998767999999886543
No 34
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=22.10 E-value=49 Score=26.50 Aligned_cols=28 Identities=21% Similarity=0.769 Sum_probs=17.8
Q ss_pred CceEecCC--Cc-ccccc---CCCCCCCCCceee
Q 006267 591 IQWVQCED--CS-KWRKV---PANARLPSKWTCS 618 (653)
Q Consensus 591 ~~WVQCD~--C~-KWRrL---P~~~~lP~kW~Cs 618 (653)
...|+||. |. .|=-+ .......++|+|.
T Consensus 22 g~MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp 55 (62)
T 2g6q_A 22 GEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCP 55 (62)
T ss_dssp SEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCH
T ss_pred CCeeeeeCCCCCcccEecccCCcCcCCCCCEECc
Confidence 37999999 65 89432 2112334789985
No 35
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=21.72 E-value=48 Score=27.25 Aligned_cols=29 Identities=24% Similarity=0.795 Sum_probs=18.7
Q ss_pred CceEecCC--Cc-cccccCC---CCCCCCCceeec
Q 006267 591 IQWVQCED--CS-KWRKVPA---NARLPSKWTCSG 619 (653)
Q Consensus 591 ~~WVQCD~--C~-KWRrLP~---~~~lP~kW~Csm 619 (653)
...|+||. |. .|=-+.= .....++|||..
T Consensus 27 g~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~ 61 (71)
T 1wen_A 27 GEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPR 61 (71)
T ss_dssp SSEECCSCSSCSCCCEETTTTTCSSCCSSCCCCTT
T ss_pred CCEeEeeCCCCCCccEecccCCcCcCCCCCEECCC
Confidence 47999999 87 7943321 112248999954
No 36
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=21.15 E-value=53 Score=26.00 Aligned_cols=28 Identities=21% Similarity=0.786 Sum_probs=17.7
Q ss_pred CceEecCC--Cc-ccccc---CCCCCCCCCceee
Q 006267 591 IQWVQCED--CS-KWRKV---PANARLPSKWTCS 618 (653)
Q Consensus 591 ~~WVQCD~--C~-KWRrL---P~~~~lP~kW~Cs 618 (653)
...|+||. |. .|=-+ .......++|+|.
T Consensus 20 g~mi~CD~~~C~~~wfH~~Cvgl~~~p~~~w~Cp 53 (59)
T 3c6w_A 20 GEMIGCDNPDCPIEWFHFACVDLTTKPKGKWFCP 53 (59)
T ss_dssp SEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCH
T ss_pred CCeeEeeCCCCCCCCEecccCCcccCCCCCEECc
Confidence 46999999 77 78432 1111233789985
No 37
>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel antibody, addiction antidote, immun; 1.65A {Escherichia coli} SCOP: b.129.1.1 PDB: 1ub4_C
Probab=20.74 E-value=73 Score=26.10 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=22.6
Q ss_pred hhhhhccCCCCCCEEEEEEecCCCeEEEEE
Q 006267 427 TPCIQNMQLQAGDIVTFSRLEPEGKLVMGF 456 (653)
Q Consensus 427 s~FVrsK~LqaGDtVvF~R~e~~GkL~IGV 456 (653)
.+++++.+|.+||.|.|... +|+++|.-
T Consensus 19 k~~~~~lgl~~gd~v~i~~~--~~~iii~p 46 (82)
T 1mvf_D 19 ATLMQALNLNIDDEVKIDLV--DGKLIIEP 46 (82)
T ss_dssp HHHHHHTTCCTTCBEEEEEE--TTEEEEEE
T ss_pred HHHHHHcCCCCCCEEEEEEE--CCEEEEEE
Confidence 57899999999999999874 56777643
No 38
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=20.16 E-value=70 Score=26.97 Aligned_cols=28 Identities=25% Similarity=0.170 Sum_probs=19.4
Q ss_pred ccCCCCCCEEEEEEecCCC-eEEE-EEEeC
Q 006267 432 NMQLQAGDIVTFSRLEPEG-KLVM-GFRKA 459 (653)
Q Consensus 432 sK~LqaGDtVvF~R~e~~G-kL~I-GVRRa 459 (653)
-.+|++||.|.|.-...+| .|.| .+++.
T Consensus 45 l~~lk~Gd~V~F~~~~~~~g~~~it~i~~~ 74 (82)
T 2l55_A 45 PQGLKAGDRVAFSFRLDPHGMATLVTVAPQ 74 (82)
T ss_dssp CSSCSTTCEEEEEEEEETTTEEEEEEEEEC
T ss_pred hhcCCCCCEEEEEEEECCCCeEEEEEEEec
Confidence 4689999999987654344 6655 55554
Done!