BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006268
(653 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XCF|A Chain A, Crystal Structure Of P28lY173F TRYPTOPHAN SYNTHASE ALPHA-
Subunits From Escherichia Coli
pdb|1XCF|B Chain B, Crystal Structure Of P28lY173F TRYPTOPHAN SYNTHASE ALPHA-
Subunits From Escherichia Coli
Length = 268
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%)
Query: 209 LALGFLFSTTNVDSTMSAVSSFRSKSFGRTPFSSYFTRRILKRLETIVAIGLIVGMMVVF 268
L LG FS D ++ R+ + G TP + I++ + IGL++ +VF
Sbjct: 48 LELGIPFSDPLADGPTIQNATLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVF 107
Query: 269 LAGIIFFSYKIGVEGKDAVISIKSHVEES 297
GI F + G D+V+ VEES
Sbjct: 108 NKGIDEFYARCEKVGVDSVLVADVPVEES 136
>pdb|1KFC|A Chain A, Crystal Structure Of Alphat183v Mutant Of Tryptophan
Synthase From Salmonella Typhimurium With Indole
Propanol Phosphate
pdb|1KFE|A Chain A, Crystal Structure Of Alphat183v Mutant Of Tryptophan
Synthase From Salmonella Typhimurium With L-ser Bound To
The Beta Site
Length = 268
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%)
Query: 209 LALGFLFSTTNVDSTMSAVSSFRSKSFGRTPFSSYFTRRILKRLETIVAIGLIVGMMVVF 268
L LG FS D ++ R+ + G TP + I++ + IGL++ +VF
Sbjct: 48 LELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVF 107
Query: 269 LAGIIFFSYKIGVEGKDAVISIKSHVEES 297
GI F + G D+V+ VEES
Sbjct: 108 NNGIDAFYARCEQVGVDSVLVADVPVEES 136
>pdb|1QOP|A Chain A, Crystal Structure Of Wild-type Tryptophan Synthase
Complexed With Indole Propanol Phosphate
pdb|1K8X|A Chain A, Crystal Structure Of Alphat183v Mutant Of Tryptophan
Synthase From Salmonella Typhimurium
pdb|1WBJ|A Chain A, Wildtype Tryptophan Synthase Complexed With Glycerol
Phosphate
pdb|2CLK|A Chain A, Tryptophan Synthase In Complex With D-Glyceraldehyde 3-
Phosphate (G3p)
pdb|2J9Z|A Chain A, Tryptophan Synthase T110 Mutant Complex
pdb|3CEP|A Chain A, Structure Of A Tryptophan Synthase Quinonoid Intermediate
Length = 268
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%)
Query: 209 LALGFLFSTTNVDSTMSAVSSFRSKSFGRTPFSSYFTRRILKRLETIVAIGLIVGMMVVF 268
L LG FS D ++ R+ + G TP + I++ + IGL++ +VF
Sbjct: 48 LELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVF 107
Query: 269 LAGIIFFSYKIGVEGKDAVISIKSHVEES 297
GI F + G D+V+ VEES
Sbjct: 108 NNGIDAFYARCEQVGVDSVLVADVPVEES 136
>pdb|1V7Y|A Chain A, Crystal Structure Of Tryptophan Synthase Alpha-Subunit
From Escherichia Coli At Room Temperature
pdb|1V7Y|B Chain B, Crystal Structure Of Tryptophan Synthase Alpha-Subunit
From Escherichia Coli At Room Temperature
pdb|1WQ5|A Chain A, Crystal Structure Of Tryptophan Synthase Alpha-Subunit
From Escherichia Coli
pdb|1WQ5|B Chain B, Crystal Structure Of Tryptophan Synthase Alpha-Subunit
From Escherichia Coli
Length = 268
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%)
Query: 209 LALGFLFSTTNVDSTMSAVSSFRSKSFGRTPFSSYFTRRILKRLETIVAIGLIVGMMVVF 268
L LG FS D ++ R+ + G TP + ++++ + IGL++ +VF
Sbjct: 48 LELGIPFSDPLADGPTIQNATLRAFAAGVTPAQCFEMLALIRQKHPTIPIGLLMYANLVF 107
Query: 269 LAGIIFFSYKIGVEGKDAVISIKSHVEES 297
GI F + G D+V+ VEES
Sbjct: 108 NKGIDEFYAQCEKVGVDSVLVADVPVEES 136
>pdb|1XC4|A Chain A, Crystal Structure Of Wild-Type Tryptophan Synthase
Alpha-Subunits From Escherichia Coli
pdb|1XC4|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Alpha-Subunits From Escherichia Coli
Length = 268
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%)
Query: 209 LALGFLFSTTNVDSTMSAVSSFRSKSFGRTPFSSYFTRRILKRLETIVAIGLIVGMMVVF 268
L LG FS D ++ R+ + G TP + +++ + IGL++ +VF
Sbjct: 48 LELGIPFSDPLADGPTIQNATLRAFAAGVTPAQCFEMLALIREKHPTIPIGLLMYANLVF 107
Query: 269 LAGIIFFSYKIGVEGKDAVISIKSHVEES 297
GI F + G D+V+ VEES
Sbjct: 108 NKGIDEFYARCEKVGVDSVLVADVPVEES 136
>pdb|3PR2|A Chain A, Tryptophan Synthase Indoline Quinonoid Structure With F9
Inhibitor In Alpha Site
Length = 266
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%)
Query: 209 LALGFLFSTTNVDSTMSAVSSFRSKSFGRTPFSSYFTRRILKRLETIVAIGLIVGMMVVF 268
L LG FS D ++ R+ + G TP + +++ + IGL++ +VF
Sbjct: 47 LELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLALIREKHPTIPIGLLMYANLVF 106
Query: 269 LAGIIFFSYKIGVEGKDAVISIKSHVEES 297
GI F + G D+V+ VEES
Sbjct: 107 NNGIDAFYARCEQVGVDSVLVADVPVEES 135
>pdb|1TTP|A Chain A, Tryptophan Synthase (E.C.4.2.1.20) In The Presence Of
Cesium, Room Temperature
pdb|1TTQ|A Chain A, Tryptophan Synthase (E.C.4.2.1.20) In The Presence Of
Potassium At Room Temperature
pdb|1UBS|A Chain A, Tryptophan Synthase (E.C.4.2.1.20) With A Mutation Of Lys
87->thr In The B Subunit And In The Presence Of Ligand
L-Serine
pdb|2TYS|A Chain A, Crystal Structures Of Mutant (Betak87t) Tryptophan
Synthase Alpha2 Beta2 Complex With Ligands Bound To The
Active Sites Of The Alpha And Beta Subunits Reveal
Ligand-Induced Conformational Changes
pdb|2TRS|A Chain A, Crystal Structures Of Mutant (betak87t) Tryptophan
Synthase Alpha2 Beta2 Complex With Ligands Bound To The
Active Sites Of The Alpha And Beta Subunits Reveal
Ligand-induced Conformational Changes
pdb|1A50|A Chain A, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With 5- Fluoroindole Propanol Phosphate
pdb|1A5S|A Chain A, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With 5- Fluoroindole Propanol Phosphate And
L-Ser Bound As Amino Acrylate To The Beta Site
pdb|2WSY|A Chain A, Crystal Structure Of Wild-Type Tryptophan Synthase
pdb|1BKS|A Chain A, Tryptophan Synthase (E.C.4.2.1.20) From Salmonella
Typhimurium
pdb|1C9D|A Chain A, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2-Hydroxy-4- Fluorophenylthio)-Butylphosphonic Acid
pdb|1CW2|A Chain A, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2-Hydroxyphenylsulfinyl)- Butylphosphonic Acid
pdb|1CX9|A Chain A, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2-Aminophenylthio)- Butylphosphonic Acid
pdb|1C29|A Chain A, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2-Hydroxyphenylthio)-1- Butenylphosphonic Acid
pdb|1C8V|A Chain A, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2-Hydroxyphenylthio)- Butylphosphonic Acid
pdb|1QOQ|A Chain A, Crystal Structure Of Wild-type Tryptophan Synthase
Complexed With Indole Glycerol Phosphate
pdb|1FUY|A Chain A, Crystal Structure Of Betaa169lBETAC170W DOUBLE MUTANT OF
TRYPTOPHAN Synthase Complexed With
5-Fluoro-Indole-Propanol Phosphate
pdb|1K3U|A Chain A, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With N- [1h-Indol-3-Yl-Acetyl]aspartic Acid
pdb|1K7X|A Chain A, Crystal Structure Of The Beta-Ser178pro Mutant Of
Tryptophan Synthase
pdb|1K8Y|A Chain A, Crystal Structure Of The Tryptophan Synthase
Beta-Ser178pro Mutant Complexed With
D,L-Alpha-Glycerol-3-Phosphate
pdb|1K8Z|A Chain A, Crystal Structure Of The Tryptophan Synthase
Beta-Ser178pro Mutant Complexed With
N-[1h-Indol-3-Yl-Acetyl]glycine Acid
pdb|1K7E|A Chain A, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With N- [1h-Indol-3-Yl-Acetyl]glycine Acid
pdb|1K7F|A Chain A, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With N- [1h-Indol-3-Yl-Acetyl]valine Acid
pdb|1KFJ|A Chain A, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With L-Serine
pdb|1TJP|A Chain A, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With 1-
[(2-Hydroxylphenyl)amino]3-Glycerolphosphate
pdb|2CLE|A Chain A, Tryptophan Synthase In Complex With N-(4'-
Trifluoromethoxybenzoyl)-2-Amino-1-Ethylphosphate (F6)-
Lowf6 Complex
pdb|2CLH|A Chain A, Tryptophan Synthase In Complex With (Naphthalene-2'-
Sulfonyl)-2-Amino-1-Ethylphosphate (F19)
pdb|2CLI|A Chain A, Tryptophan Synthase In Complex With N-(4'-
Trifluoromethoxybenzenesulfonyl)-2-Amino-1-
Ethylphosphate (F9)
pdb|2CLL|A Chain A, Tryptophan Synthase (External Aldimine State) In Complex
With N-(4'-Trifluoromethoxybenzenesulfonyl)-2-Amino-1-
Ethylphosphate (F9)
pdb|2CLM|A Chain A, Tryptophan Synthase (External Aldimine State) In Complex
With N-(4'-Trifluoromethoxybenzoyl)-2-Amino-1-
Ethylphosphate (F6f)
pdb|2CLO|A Chain A, Tryptophan Synthase (External Aldimine State) In Complex
With (Naphthalene-2'-Sulfonyl)-2-Amino-1-Ethylphosphate
(F19)
pdb|2CLF|A Chain A, Tryptophan Synthase In Complex With N-(4'-
Trifluoromethoxybenzoyl)-2-Amino-1-Ethylphosphate (F6) -
Highf6 Complex
pdb|2J9X|A Chain A, Tryptophan Synthase In Complex With Gp,
Alpha-D,L-Glycerol- Phosphate, Cs, Ph6.5 - Alpha
Aminoacrylate Form - (Gp)e(A- A)
pdb|2TSY|A Chain A, Crystal Structures Of Mutant (Betak87t) Tryptophan
Synthase Alpha2 Beta2 Complex With Ligands Bound To The
Active Sites Of The Alpha And Beta Subunits Reveal
Ligand-Induced Conformational Changes
pdb|2RH9|A Chain A, Tryptophan Synthase Complexed With Igp, Internal Aldimine,
Ph 9.0
pdb|2RHG|A Chain A, Tryptophan Synthase Complexed With Igp, Ph 7.0, Internal
Aldimine
pdb|2J9Y|A Chain A, Tryptophan Synthase Q114n Mutant In Complex With Compound
Ii
Length = 268
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%)
Query: 209 LALGFLFSTTNVDSTMSAVSSFRSKSFGRTPFSSYFTRRILKRLETIVAIGLIVGMMVVF 268
L LG FS D ++ R+ + G TP + +++ + IGL++ +VF
Sbjct: 48 LELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLALIREKHPTIPIGLLMYANLVF 107
Query: 269 LAGIIFFSYKIGVEGKDAVISIKSHVEES 297
GI F + G D+V+ VEES
Sbjct: 108 NNGIDAFYARCEQVGVDSVLVADVPVEES 136
>pdb|1KFB|A Chain A, Crystal Structure Of Alphat183v Mutant Of Tryptophan
Synthase From Salmonella Typhimurium With Indole
Glycerol Phosphate
pdb|1KFK|A Chain A, Crystal Structure Of Tryptophan Synthase From Salmonella
Typhimurium
Length = 268
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%)
Query: 209 LALGFLFSTTNVDSTMSAVSSFRSKSFGRTPFSSYFTRRILKRLETIVAIGLIVGMMVVF 268
L LG FS D ++ R+ + G TP + +++ + IGL++ +VF
Sbjct: 48 LELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLALIREKHPTIPIGLLMYANLVF 107
Query: 269 LAGIIFFSYKIGVEGKDAVISIKSHVEES 297
GI F + G D+V+ VEES
Sbjct: 108 NNGIDAFYARCEQVGVDSVLVADVPVEES 136
>pdb|3VND|A Chain A, Crystal Structure Of Tryptophan Synthase Alpha-subunit
From The Psychrophile Shewanella Frigidimarina K14-2
pdb|3VND|B Chain B, Crystal Structure Of Tryptophan Synthase Alpha-subunit
From The Psychrophile Shewanella Frigidimarina K14-2
pdb|3VND|C Chain C, Crystal Structure Of Tryptophan Synthase Alpha-subunit
From The Psychrophile Shewanella Frigidimarina K14-2
pdb|3VND|D Chain D, Crystal Structure Of Tryptophan Synthase Alpha-subunit
From The Psychrophile Shewanella Frigidimarina K14-2
pdb|3VND|E Chain E, Crystal Structure Of Tryptophan Synthase Alpha-subunit
From The Psychrophile Shewanella Frigidimarina K14-2
pdb|3VND|F Chain F, Crystal Structure Of Tryptophan Synthase Alpha-subunit
From The Psychrophile Shewanella Frigidimarina K14-2
pdb|3VND|G Chain G, Crystal Structure Of Tryptophan Synthase Alpha-subunit
From The Psychrophile Shewanella Frigidimarina K14-2
pdb|3VND|H Chain H, Crystal Structure Of Tryptophan Synthase Alpha-subunit
From The Psychrophile Shewanella Frigidimarina K14-2
Length = 267
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 40/89 (44%)
Query: 209 LALGFLFSTTNVDSTMSAVSSFRSKSFGRTPFSSYFTRRILKRLETIVAIGLIVGMMVVF 268
L LGF FS D + ++ RS + G T + ++ + IGL++ +VF
Sbjct: 49 LELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQHPDMPIGLLLYANLVF 108
Query: 269 LAGIIFFSYKIGVEGKDAVISIKSHVEES 297
GI F K G D+V+ VEES
Sbjct: 109 ANGIDEFYTKAQAAGVDSVLIADVPVEES 137
>pdb|1A5A|A Chain A, Cryo-Crystallography Of A True Substrate,
Indole-3-Glycerol Phosphate, Bound To A Mutant
(Alphad60n) Tryptophan Synthase Alpha2beta2 Complex
Reveals The Correct Orientation Of Active Site Alpha Glu
49
pdb|1A5B|A Chain A, Cryo-Crystallography Of A True Substrate,
Indole-3-Glycerol Phosphate, Bound To A Mutant (Alpha
D60n) Tryptophan Synthase Alpha2beta2 Complex Reveals
The Correct Orientation Of Active Site Alpha Glu 49
pdb|1BEU|A Chain A, Trp Synthase (D60n-Ipp-Ser) With K+
Length = 268
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 40/89 (44%)
Query: 209 LALGFLFSTTNVDSTMSAVSSFRSKSFGRTPFSSYFTRRILKRLETIVAIGLIVGMMVVF 268
L LG FS + ++ R+ + G TP + +++ + IGL++ +VF
Sbjct: 48 LELGVPFSDPLANGPTIQNANLRAFAAGVTPAQCFEMLALIREKHPTIPIGLLMYANLVF 107
Query: 269 LAGIIFFSYKIGVEGKDAVISIKSHVEES 297
GI F + G D+V+ VEES
Sbjct: 108 NNGIDAFYARCEQVGVDSVLVADVPVEES 136
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,368,436
Number of Sequences: 62578
Number of extensions: 602045
Number of successful extensions: 1756
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1747
Number of HSP's gapped (non-prelim): 12
length of query: 653
length of database: 14,973,337
effective HSP length: 105
effective length of query: 548
effective length of database: 8,402,647
effective search space: 4604650556
effective search space used: 4604650556
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)