Query 006268
Match_columns 653
No_of_seqs 311 out of 1700
Neff 5.1
Searched_HMMs 46136
Date Thu Mar 28 20:48:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006268.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006268hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2365 Uncharacterized membra 100.0 1.3E-87 2.9E-92 727.4 23.7 626 1-649 64-779 (808)
2 COG0628 yhhT Predicted permeas 100.0 5.4E-29 1.2E-33 265.5 35.7 188 457-648 154-347 (355)
3 TIGR02872 spore_ytvI sporulati 100.0 3.7E-28 8.1E-33 254.4 36.9 185 451-639 148-337 (341)
4 PRK10983 putative inner membra 100.0 5.3E-28 1.1E-32 260.5 38.2 185 455-644 158-347 (368)
5 PF01594 UPF0118: Domain of un 100.0 8.4E-28 1.8E-32 251.1 34.5 186 453-642 136-327 (327)
6 PRK12287 tqsA pheromone autoin 100.0 7.5E-26 1.6E-30 241.2 34.4 181 458-643 145-330 (344)
7 KOG2365 Uncharacterized membra 97.1 0.011 2.3E-07 67.5 15.6 78 243-320 362-444 (808)
8 PF11744 ALMT: Aluminium activ 88.8 28 0.0006 39.3 18.2 85 255-344 154-243 (406)
9 PF01594 UPF0118: Domain of un 81.6 73 0.0016 33.6 16.6 44 87-131 7-50 (327)
10 PF04306 DUF456: Protein of un 80.3 5.5 0.00012 38.3 6.8 81 550-635 5-95 (140)
11 TIGR03546 conserved hypothetic 65.7 36 0.00078 33.5 8.6 28 621-648 115-142 (154)
12 PF09835 DUF2062: Uncharacteri 60.6 74 0.0016 30.4 9.7 37 611-647 116-152 (154)
13 TIGR02872 spore_ytvI sporulati 52.9 3E+02 0.0065 29.0 15.0 34 498-531 191-224 (341)
14 PF06679 DUF1180: Protein of u 52.8 59 0.0013 32.4 7.6 26 69-98 92-117 (163)
15 PF15110 TMEM141: TMEM141 prot 47.3 19 0.00041 32.7 3.0 39 75-113 19-65 (94)
16 TIGR00727 ISP4_OPT small oligo 46.5 2.5E+02 0.0054 34.0 12.9 139 470-614 360-514 (681)
17 PF09546 Spore_III_AE: Stage I 46.1 4.4E+02 0.0096 28.9 20.2 100 453-563 136-235 (328)
18 KOG2629 Peroxisomal membrane a 45.7 66 0.0014 34.8 7.2 35 70-108 80-114 (300)
19 COG4129 Predicted membrane pro 44.9 1.5E+02 0.0032 32.8 9.9 60 512-573 10-81 (332)
20 PF10691 DUF2497: Protein of u 42.8 11 0.00024 32.6 0.8 22 302-324 44-65 (73)
21 TIGR02829 spore_III_AE stage I 39.8 6E+02 0.013 28.7 20.0 99 453-562 192-290 (381)
22 KOG2675 Adenylate cyclase-asso 37.2 41 0.00088 38.2 4.3 46 33-80 227-272 (480)
23 COG2839 Uncharacterized protei 36.3 1.8E+02 0.004 28.7 8.0 50 588-639 65-118 (160)
24 PF12805 FUSC-like: FUSC-like 34.9 5.1E+02 0.011 27.3 12.0 100 90-200 76-188 (284)
25 KOG2262 Sexual differentiation 32.5 5.7E+02 0.012 31.1 12.6 142 474-618 409-567 (761)
26 PF15361 RIC3: Resistance to i 29.8 1.6E+02 0.0035 28.8 6.7 15 84-98 91-105 (152)
27 COG0628 yhhT Predicted permeas 29.7 7.5E+02 0.016 26.8 18.9 36 608-645 305-340 (355)
28 PRK12270 kgd alpha-ketoglutara 28.3 2.4E+02 0.0052 35.8 8.9 66 111-189 116-181 (1228)
29 PRK10983 putative inner membra 25.6 5.4E+02 0.012 28.5 10.6 40 83-122 16-55 (368)
30 COG3290 CitA Signal transducti 25.5 1.9E+02 0.0041 34.0 7.1 24 297-320 54-77 (537)
31 PF08566 Pam17: Mitochondrial 23.6 2E+02 0.0044 29.0 6.1 51 595-650 68-119 (173)
32 PF06679 DUF1180: Protein of u 22.6 2.5E+02 0.0055 28.0 6.5 7 131-137 128-134 (163)
33 PF08999 SP_C-Propep: Surfacta 21.1 1.5E+02 0.0033 26.5 4.1 54 247-312 32-85 (93)
34 PF06645 SPC12: Microsomal sig 20.9 3.7E+02 0.0081 23.3 6.5 62 249-314 10-72 (76)
35 PF07319 DnaI_N: Primosomal pr 20.2 55 0.0012 29.2 1.3 35 297-331 26-63 (94)
No 1
>KOG2365 consensus Uncharacterized membrane protein [Function unknown]
Probab=100.00 E-value=1.3e-87 Score=727.37 Aligned_cols=626 Identities=48% Similarity=0.755 Sum_probs=550.4
Q ss_pred CCcCCCCCCCCCCCCCCCCchhHhhhhhccCCCCCCCCCCCCCC----------CCCCCCCCCCCCCCCCCCcc-ccCCc
Q 006268 1 MELVPFSDDPDKKSSSTTPPWQDMFRSASIRKPSATSNSQAPLP----------ESHAPPPSQANSTAPGQKTT-CSGDP 69 (653)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~-~~~~~ 69 (653)
|||+||. ++.++..+..+.|++||||++.|+|..- |.- ++-.+||.++..-+.++.+. +..|.
T Consensus 64 t~L~Pfk-s~~~~~~~hwL~~l~~~~s~~~~~~~~l-----P~~~~s~isEkiyttfasp~r~~~~~g~~~l~~Ls~~~s 137 (808)
T KOG2365|consen 64 TELVPFK-SETKSSIPHWLAWLEMFRSASSRKPQDL-----PSSSSSSISEKIYTTFASPPRKPSGDGSSSLTSLSTVDS 137 (808)
T ss_pred ceeecch-hhhhhhhHHHHHHHHHhcchhhhccccC-----CcccchhHHHHHhhhhcCCCCCeeeecccceeeeeechh
Confidence 6899999 8999999999999999999999999872 222 22223444443334444555 78899
Q ss_pred hhHHHHHHHHHhhHHHHHHHHH--HHHHHHHHhhhhhHH--HHHH----h---hccchhHhhHHHHhccccccchhhHHH
Q 006268 70 QVRLALYIALAHAGLAFTLFIL--YFIFKLLQDYIRPIQ--WAIL----L---SIPLRGIQQALVAFWSEPLQLGLTETV 138 (653)
Q Consensus 70 ~~~~~~~~a~ah~g~a~~~~~l--y~~~~l~~~~l~~~~--wa~l----~---s~~lr~~~~~~v~f~~~~~~~gl~~~~ 138 (653)
|+|++.|++|||+|++.+|+++ |.+++|++.|+||+| |+.+ | |+|++.+|..+++||+.|+|.|.++.+
T Consensus 138 ~~~~~~~~~~a~~~l~~~i~~far~wV~~L~~~Y~~~i~yvwn~~nkkl~RsfSiP~wii~~~~~~~~~gplR~gvf~Vv 217 (808)
T KOG2365|consen 138 QARLAMYIAMAHAGLAFAICVFARYWVGKLLQEYLRPIQYVWNILNKKLCRSFSIPLWIIQETLVDFWSGPLRLGVFEVV 217 (808)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhchhhhhHHhhcCccHHHHHHHHHHHhccchhcchhhhh
Confidence 9999999999999999999999 999999999999999 9999 9 999999999999999999999999999
Q ss_pred hhhhHHHHHhhhhhHHhH--------HHHHHHHHHhh------ccC---CCCCC-CCchhHHHHH-----------HHHH
Q 006268 139 LAVPVAIFKVFVGTLVDI--------KEVFFKVFLKK------LKN---NGPRH-SRSGFSKLVR-----------WLVS 189 (653)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~------~~~---~~~~~-~~~~~~~~~~-----------~l~~ 189 (653)
.|+|..++..+.+...|. ...|+|..+|+ |+| ++.|+ ..-||+|++. |+++
T Consensus 218 ~av~~~~~~~~ig~~~~seellekenss~~~~~s~~pPnvekv~~pakek~t~~~~~lg~~~l~~tstvdeaiTgDwl~~ 297 (808)
T KOG2365|consen 218 LAVPVSVFNVFIGSIVDSEELLEKENSSVCFRVSLRPPNVEKVSKPAKEKRTRKKNDLGFSKLVKTSTVDEAITGDWLVS 297 (808)
T ss_pred hhHhhHHHHhhhcCcCcHHHHHhhhccccccccccCCCCcccCCCCCCcCCCCCCcccccccccccchhhhhccCcEEEe
Confidence 999999999999999999 66788899988 555 33332 6679999999 9999
Q ss_pred HHHHHHHHHhhh-hhhHHHHHHHHHHhhccccccccccccccccc----------ccC------------------CCCc
Q 006268 190 FAVFVIAYETIG-AVGSLVILALGFLFSTTNVDSTMSAVSSFRSK----------SFG------------------RTPF 240 (653)
Q Consensus 190 f~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~------------------~~~~ 240 (653)
|++|+++|||+| ..|++.+|.+.|+++.++++...+++++.|.. +++ +.+.
T Consensus 298 ~~v~~ia~~~I~r~~g~l~LL~~pf~~~~~~~~~~~~gV~~~~~nfldstWqkmssf~~~~~~a~~~~pi~~~~k~L~~i 377 (808)
T KOG2365|consen 298 FGVFVIAYERIGRGIGSLVLLSLPFLFSSKNVDSSLSGVSSLRSNFLDSTWQKMSSFRRSHFTAYFTRPIMTRLKTLVAI 377 (808)
T ss_pred ehHHHHHHHHHHcccceEEEeecchheehhhhHHHHHhHHHHHHhhhhhhHHhhhHHHHhheeeeecccHHHHHHHHHhh
Confidence 999999999999 89999999999999999999998888887766 332 2348
Q ss_pred chHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhcccccccccccchhhhhhcccCCccchhhh
Q 006268 241 SSYFTRRILKRLETIVAIGLIVGMMVVFLAGIIFFSYKIGVEGKDAVISIKSHVEESNYAERLGVKKWMEENDVPGMVDR 320 (653)
Q Consensus 241 ~~~~~~~l~~~ld~ivSi~lIl~liv~~~~~~vF~~~qi~~E~~~avi~l~~~v~n~t~~~~p~l~~wL~e~d~~~~vds 320 (653)
|.++-++|++.+|.+.|+++|+++.+|+.+...|+++|+|+|.+|. +++++|++|++-.++|++.||+||.
T Consensus 378 d~~v~~~lhd~~Dvl~S~~I~fll~ig~~~~~~~~~~k~H~E~vh~-~e~tsn~~n~~~~~~p~~~d~~~~~-------- 448 (808)
T KOG2365|consen 378 DLIVLMILHDGSDVLLSGVIFFLLKIGVEGKDAVYSLKSHVEEVHY-AEKTSNKQNMDENDVPGMVDMYTTK-------- 448 (808)
T ss_pred chhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhH-HHHhhhhccCCcccchhHhhhhhHH--------
Confidence 8899999999999999999999999999999999999999999996 6999999999999999888888875
Q ss_pred HHHHHHHHHHHHHHhhhhcccceeeecccccccccCCCCCcccchh-hcc----cchhhHhhhhhhhhhhhhhhhhhhhh
Q 006268 321 YTTTFYETVSEQVDSLAMQYNMTEFVTGIKHFVIAPPAGSSEQSKA-LTS----LSPYTQKLMSLRNRVTKREWKQIYTE 395 (653)
Q Consensus 321 ~~~~~y~~v~e~i~~~~~qyn~te~~~~v~~~~~~~~~~~~~~~~~-l~~----~~~~~~~~~~~~~~~~~~~w~~~~~~ 395 (653)
+.||.+.|++|+++|||||||+.+++||++++++.|+...|++ +.. ||.|.+++... +.+++|.++|-+
T Consensus 449 ---~e~~~~~~~~~~~ayqygrtwl~~~i~~~~~~k~~na~~~e~qvl~~~d~ly~~w~~~n~~f---v~~~~~~~~~v~ 522 (808)
T KOG2365|consen 449 ---FEYETVSEQIDSLAYQYGRTWLVTGIKHFVIGKPQNATSTESQVLITPDPLYEKWMSLNTRF---VKNREWSQIYVE 522 (808)
T ss_pred ---HHHHHHHHHHHHHHHHhhhHHHHhhhHHHhcCCCCccccchHhHhhcccHHHHHHHHhccch---hhccccceeeeE
Confidence 2377888999999999999999999999999988885555554 333 55555554443 568899999887
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhhhhhHHHhhhhhhhhcchhhhhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 006268 396 VDAIFRELVITREDLVQKAKEFAYQGINVSQRVFAGSASVLGSSAKLMLSTGYLIISGAAEVFNFVSQLMIFLWVLYYLI 475 (653)
Q Consensus 396 l~~~~~~l~i~~~~l~~~l~~~l~~~~~v~~~ll~~~~svl~~~~sll~~~~~~i~s~g~~v~~fli~~vI~l~vlFyLL 475 (653)
.+-.+++..++++|+.+++++++.+.++++|+++..+.+.++..+++++++.+.++++|+.++||++++++|+.++||++
T Consensus 523 ~q~~~~~di~~~~dlv~~vken~~t~m~I~qsv~~~~a~nVs~~~~~v~sL~~Ii~s~g~~llNfi~~liIFLt~lyyLL 602 (808)
T KOG2365|consen 523 VQVIFREDIITREDLVEKVKENAVTGMDISQSVFSSSASNVSGGAKFVFSLGNIIISGGAELLNFISQLIIFLTVLYYLL 602 (808)
T ss_pred eeehhhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 77667777789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcChhh--HHHHHHh--hcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhccc
Q 006268 476 TSESGG--VTEQVMG--MLPISKPARIRCVEVIDNAISGVLLATVEIAFFQGCLTWLLFRFFKIHFLYMSTTLAFISALF 551 (653)
Q Consensus 476 ~sDg~~--l~~~l~~--llP~~~~~~~~l~~~i~~~i~~~l~G~liiAli~Gilt~Igf~I~GIp~lllg~l~afllslI 551 (653)
.++.++ ..+|... .+|.....++++.+.++.+|+|++.+..++|.++|++||+.+.++|++.++++.++|++++.+
T Consensus 603 Sss~~~~~plqWa~~l~~l~~~~~Ssn~i~~~~e~AI~GVf~aSakmA~FyGlyTwl~h~lf~inivf~pS~lA~I~aa~ 682 (808)
T KOG2365|consen 603 SSSSGGVTPLQWAQVLNMLPINASSSNRIVEVLELAISGVFLASAKMAFFYGLYTWLLHRLFNINIVFMPSVLAFISAAL 682 (808)
T ss_pred cccCCCeeehhhhhhcccccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCceEEeehhHHHHHHhhC
Confidence 965444 3445544 455555667899999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHh-hhchHHHHHHHHHHHhhhcceeccccCCCCCCCHHHHHHHHHHHHHhhccccchhhhHHHH
Q 006268 552 PIFPFWFATIPAAVQLLL-ESRYIVAISLSVIHLVLLDYGTCEIQEDIPGYSPYLTGLSIIGGMTLFPSALEGAIMGPLI 630 (653)
Q Consensus 552 P~VGp~Iv~IPa~l~lll-~g~~~~AI~L~i~~lvvvdnvL~Pi~~~ivglhPllilLAIlgG~~lFG~Gl~G~ILGPlI 630 (653)
|++|++++.+|+++.+++ +|....|+++.+.|++.+.+....+++++.|-|||++++|++||.+++| +.|+++||.+
T Consensus 683 Pi~p~y~aaIpa~l~LwLv~G~g~~Avil~V~hl~p~~f~ds~iy~dI~GshpYlTGLAIiGG~y~lg--l~gaiiGpii 760 (808)
T KOG2365|consen 683 PIFPYYFAAIPAALQLWLVEGRGIVAVILSVTHLVPMEFGDSEIYDDIPGSHPYLTGLAIIGGVYLLG--LVGAIIGPII 760 (808)
T ss_pred cccchHHHHHHHHHHHHhhcCcchhhHHHHHHHhhHHHhhhhhhhhcCCCCCcceeeehhhccchhhh--hhhhhhhhhH
Confidence 999999999999999965 8999999999999999887788889999999999999999999999999 9999999999
Q ss_pred HHHHHHHHHHHHHHHhhCC
Q 006268 631 TTVVIALKDLYVEFVLEEP 649 (653)
Q Consensus 631 lal~~vl~~ly~e~~~~~~ 649 (653)
+|+++++-|+|........
T Consensus 761 lc~~~v~snIyl~~~~~~~ 779 (808)
T KOG2365|consen 761 LCFVMVFSNIYLLQGAIMG 779 (808)
T ss_pred HHHHHHHHHHHHHhccccc
Confidence 9999999999987665433
No 2
>COG0628 yhhT Predicted permease, member of the PurR regulon [General function prediction only]
Probab=99.97 E-value=5.4e-29 Score=265.48 Aligned_cols=188 Identities=22% Similarity=0.339 Sum_probs=164.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHcChhhHHHHHHhhcCCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 006268 457 VFNFVSQLMIFLWVLYYLITSESGGVTEQVMGMLPISKP-ARIRCVEVIDNAISGVLLATVEIAFFQGCLTWLLFRFFKI 535 (653)
Q Consensus 457 v~~fli~~vI~l~vlFyLL~sDg~~l~~~l~~llP~~~~-~~~~l~~~i~~~i~~~l~G~liiAli~Gilt~Igf~I~GI 535 (653)
+.+.+++++++++++||+++ |++++.+++.+.+|.+.+ +.+++.+++++++++|++||+++|+++|++++++++++|+
T Consensus 154 ~~~~~~~~~l~~~~~ff~L~-d~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~y~~gq~i~al~~gi~~~igl~ilgv 232 (355)
T COG0628 154 LLSLIVSLLLVLVLLFFLLL-DGERLRRKLIKLLPRKLRKRARRILSEVNATLSGYLRGQVLVALIVGILTGIGLLILGV 232 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 55677888899999999999 999999999999997644 4567789999999999999999999999999999999999
Q ss_pred c-HHHHHHHHHHHhcccccchhHHHHHHHHHHHHhhhchHHHHHHHHHHHhh---hcceeccc-cCCCCCCCHHHHHHHH
Q 006268 536 H-FLYMSTTLAFISALFPIFPFWFATIPAAVQLLLESRYIVAISLSVIHLVL---LDYGTCEI-QEDIPGYSPYLTGLSI 610 (653)
Q Consensus 536 p-~lllg~l~afllslIP~VGp~Iv~IPa~l~lll~g~~~~AI~L~i~~lvv---vdnvL~Pi-~~~ivglhPllilLAI 610 (653)
| ++.||.+++ ++++|||+||.++++|++++++.+++++.++.+++...++ .||+++|. +++..|+||+++++|+
T Consensus 233 p~alllgil~g-~~~lIP~iG~~i~~ip~~i~al~~~~~~~~l~~~~~~~vi~~i~~n~l~P~l~g~~~~l~p~~ilisl 311 (355)
T COG0628 233 PYALLLGLLAG-LLSLIPYIGPVIGLIPAVIIALLQGGPWGALLVLIVFLVIQQIEGNILRPKLMGKRLGLHPLVILLSL 311 (355)
T ss_pred cHHHHHHHHHH-HHHhhcccccHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcceeccccccccCCCCHHHHHHHH
Confidence 9 699998888 5699999999999999999999988755555544443333 29999995 6666899999999999
Q ss_pred HHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHhhC
Q 006268 611 IGGMTLFPSALEGAIMGPLITTVVIALKDLYVEFVLEE 648 (653)
Q Consensus 611 lgG~~lFG~Gl~G~ILGPlIlal~~vl~~ly~e~~~~~ 648 (653)
++|+.+|| ++|+++|||++++.+++++.|.+....+
T Consensus 312 l~g~~l~G--~~G~ila~pl~~~~k~~~~~~~~~~~~~ 347 (355)
T COG0628 312 LGGGSLFG--FVGLILAPPLAAVLKVLLRAWLEEELLA 347 (355)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 9999999999999999999998855443
No 3
>TIGR02872 spore_ytvI sporulation integral membrane protein YtvI. Three lines of evidence show this protein to be involved in sporulation. First, it is under control of a sporulation-specific sigma factor, sigma-E. Second, mutation leads to a sporulation defect. Third, it if found in exactly those genomes whose bacteria are capable of sporulation, except for being absent in Clostridium acetobutylicum ATCC824. This protein has extensive hydrophobic regions and is likely an integral membrane protein.
Probab=99.97 E-value=3.7e-28 Score=254.42 Aligned_cols=185 Identities=21% Similarity=0.301 Sum_probs=162.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHcChhhHHHHHHhhcCCCchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006268 451 ISGAAEVFNFVSQLMIFLWVLYYLITSESGGVTEQVMGMLPISKPA-RIRCVEVIDNAISGVLLATVEIAFFQGCLTWLL 529 (653)
Q Consensus 451 ~s~g~~v~~fli~~vI~l~vlFyLL~sDg~~l~~~l~~llP~~~~~-~~~l~~~i~~~i~~~l~G~liiAli~Gilt~Ig 529 (653)
.+...++.+.+++++++++.+||++. |++++++++++..|.++++ .+++.+++++.+++|++|++++|+++|++++++
T Consensus 148 ~~~~~~~~~~~~~~~~~~i~~ff~l~-d~~~~~~~~~~l~p~~~~~~~~~i~~~i~~~~~~y~~~~~~~~~i~g~~~~i~ 226 (341)
T TIGR02872 148 PSFIASIPNFLIVLLFTLIATFFISK-DLPRLKSKLFSILPERTSQKLKNIFSELKKAAFGFLKAQLILVLITFVIVLIG 226 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444567788888888999999999 9999999999999966543 467889999999999999999999999999999
Q ss_pred HHHhccc-HHHHHHHHHHHhcccccchhHHHHHHHHHHHHhhhchHHHHHHHHHHHhh--hcceeccc-cCCCCCCCHHH
Q 006268 530 FRFFKIH-FLYMSTTLAFISALFPIFPFWFATIPAAVQLLLESRYIVAISLSVIHLVL--LDYGTCEI-QEDIPGYSPYL 605 (653)
Q Consensus 530 f~I~GIp-~lllg~l~afllslIP~VGp~Iv~IPa~l~lll~g~~~~AI~L~i~~lvv--vdnvL~Pi-~~~ivglhPll 605 (653)
++++|+| +++||.++| ++++|||+||.++++|++++++.+|++..++.+++++.++ .||+++|. +++.+++||++
T Consensus 227 ~~~~gvp~a~~~~~l~~-~~~~IP~vG~~i~~ip~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~P~i~g~~~~l~p~~ 305 (341)
T TIGR02872 227 LLIIGVDYALTLALIIG-IVDILPILGPGAVLVPWALYLFITGNYAMGIGLLILYLVVLILRQILEPKVVSSSIGLHPLA 305 (341)
T ss_pred HHHHcCchHHHHHHHHH-HHHhhhhcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhHhhHHhhccCCCCHHH
Confidence 9999999 699998888 5699999999999999999998889888887766655442 39999995 66668999999
Q ss_pred HHHHHHHHHHhhccccchhhhHHHHHHHHHHHHH
Q 006268 606 TGLSIIGGMTLFPSALEGAIMGPLITTVVIALKD 639 (653)
Q Consensus 606 ilLAIlgG~~lFG~Gl~G~ILGPlIlal~~vl~~ 639 (653)
+++|+++|+++|| +.|+++|||++++.+++++
T Consensus 306 vl~~~l~g~~~~G--~~G~~l~~~~~~~~~~~~~ 337 (341)
T TIGR02872 306 TLISMYIGLKLFG--FLGLIFGPVIVVLFKALIE 337 (341)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 9999999999998887765
No 4
>PRK10983 putative inner membrane protein; Provisional
Probab=99.97 E-value=5.3e-28 Score=260.46 Aligned_cols=185 Identities=19% Similarity=0.167 Sum_probs=163.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcChhhHHHHHHhh-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006268 455 AEVFNFVSQLMIFLWVLYYLITSESGGVTEQVMGM-LPISKPARIRCVEVIDNAISGVLLATVEIAFFQGCLTWLLFRFF 533 (653)
Q Consensus 455 ~~v~~fli~~vI~l~vlFyLL~sDg~~l~~~l~~l-lP~~~~~~~~l~~~i~~~i~~~l~G~liiAli~Gilt~Igf~I~ 533 (653)
+++.+++++++++++++||+++ |++++.+++++. .|..+++.+++.+++.+++++++.|++++|+++|++++++++++
T Consensus 158 ~~~~~~~~~l~l~l~~~ff~l~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~~l~a~i~gvl~~ig~~i~ 236 (368)
T PRK10983 158 AHIGRFMMHCALMLLFSALLYW-RGEQVALGIRHFATRLAGKRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAIS 236 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678888899999999999 999999999887 45656677889999999999999999999999999999999999
Q ss_pred ccc-HHHHHHHHHHHhcccccchhHHHHHHHHHHHHhhhchHHHHHHHHHHHhh--hcceeccc-cCCCCCCCHHHHHHH
Q 006268 534 KIH-FLYMSTTLAFISALFPIFPFWFATIPAAVQLLLESRYIVAISLSVIHLVL--LDYGTCEI-QEDIPGYSPYLTGLS 609 (653)
Q Consensus 534 GIp-~lllg~l~afllslIP~VGp~Iv~IPa~l~lll~g~~~~AI~L~i~~lvv--vdnvL~Pi-~~~ivglhPllilLA 609 (653)
|+| ++++|++++ ++++ |++||.++++|++++++.+|++..++.++++++++ +||+++|+ .++.+++||++++++
T Consensus 237 gvp~a~llg~l~~-~~~i-~~~G~~~~~ip~~~~~~~~g~~~~~~~~~~~~~vv~~idnil~P~l~g~~~~l~~~~il~~ 314 (368)
T PRK10983 237 GVPYATLLTVLMI-LSCL-VQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSCVVGTLDNVIRPMLIRMGADLPMILILSG 314 (368)
T ss_pred cCCHHHHHHHHHH-HHHH-HHhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhheeeeeeecCCCCCCHHHHHHH
Confidence 999 699998776 5455 78999999999999998889888888877776543 29999995 666689999999999
Q ss_pred HHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHH
Q 006268 610 IIGGMTLFPSALEGAIMGPLITTVVIALKDLYVEF 644 (653)
Q Consensus 610 IlgG~~lFG~Gl~G~ILGPlIlal~~vl~~ly~e~ 644 (653)
+++|+.+|| +.|+++||+++++..++++.|.++
T Consensus 315 ~~~G~~~fG--~~G~~lgp~i~a~~~~l~~~~~~~ 347 (368)
T PRK10983 315 VIGGLIAFG--MIGLFIGPVVLAVSYRLFSAWVHE 347 (368)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999 999999999999999999999764
No 5
>PF01594 UPF0118: Domain of unknown function DUF20; InterPro: IPR002549 This is a family of hypothetical proteins. A number of the sequence records state they are transmembrane proteins or putative permeases. It is not clear what source suggested that these proteins might be permeases and this information should be treated with caution.
Probab=99.97 E-value=8.4e-28 Score=251.08 Aligned_cols=186 Identities=25% Similarity=0.378 Sum_probs=165.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcChhhHHHHHHhhcCCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006268 453 GAAEVFNFVSQLMIFLWVLYYLITSESGGVTEQVMGMLPIS-KPARIRCVEVIDNAISGVLLATVEIAFFQGCLTWLLFR 531 (653)
Q Consensus 453 ~g~~v~~fli~~vI~l~vlFyLL~sDg~~l~~~l~~llP~~-~~~~~~l~~~i~~~i~~~l~G~liiAli~Gilt~Igf~ 531 (653)
..+++.+.+.+++++++.+||++. |++++++++++.+|.+ +++.+++.+++++.+++|++||+++++++|++++++++
T Consensus 136 ~~~~~~~~l~~~~i~l~~~~~~l~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~ 214 (327)
T PF01594_consen 136 FISSIFSFLFNFFIFLIFLFFFLL-DGEKLRRFLIRLLPPRNRERFEEILRKIDQSLSAYLKGQLILALIQGVLTFIGFS 214 (327)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHh-hHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567788888899999999999 9999999999999977 45678899999999999999999999999999999999
Q ss_pred Hhccc-HHHHHHHHHHHhcccccchhHHHHHHHHHHHHhhhchHHHHHHHHHHHhh---hcceeccc-cCCCCCCCHHHH
Q 006268 532 FFKIH-FLYMSTTLAFISALFPIFPFWFATIPAAVQLLLESRYIVAISLSVIHLVL---LDYGTCEI-QEDIPGYSPYLT 606 (653)
Q Consensus 532 I~GIp-~lllg~l~afllslIP~VGp~Iv~IPa~l~lll~g~~~~AI~L~i~~lvv---vdnvL~Pi-~~~ivglhPlli 606 (653)
++|+| ++++|.+++ ++++||++|+.++++|++++.+.+++++.++...+...++ .||+++|. +++..++||+++
T Consensus 215 ~~gi~~~~l~~~l~~-i~~~IP~iG~~i~~ip~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~il~P~i~g~~~~i~p~~~ 293 (327)
T PF01594_consen 215 IFGIPYALLLGVLAF-ILSFIPYIGPIIVLIPAAIYALLQGGPWAALIVLIVFIVIQQLEDNILRPKIMGRSLGIHPLLI 293 (327)
T ss_pred HHHHhHHHHHHHHHH-HHhcccccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcccccchhhhcccCCCHHHH
Confidence 99999 699998887 5699999999999999999999999866666655544443 29999994 666689999999
Q ss_pred HHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHH
Q 006268 607 GLSIIGGMTLFPSALEGAIMGPLITTVVIALKDLYV 642 (653)
Q Consensus 607 lLAIlgG~~lFG~Gl~G~ILGPlIlal~~vl~~ly~ 642 (653)
++++++|+.+|| ++|+++|||++++.+.+++.||
T Consensus 294 l~~~~~g~~~fG--~~G~il~~pi~~~~~~~~~~~~ 327 (327)
T PF01594_consen 294 LLAVIIGGYLFG--FIGLILAPPILAVIKAIFEEYR 327 (327)
T ss_pred HHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999 9999999999999999998885
No 6
>PRK12287 tqsA pheromone autoinducer 2 transporter; Reviewed
Probab=99.95 E-value=7.5e-26 Score=241.22 Aligned_cols=181 Identities=15% Similarity=0.169 Sum_probs=156.2
Q ss_pred HHHHHHHHHHHHHHHHHHHcChhhHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-
Q 006268 458 FNFVSQLMIFLWVLYYLITSESGGVTEQVMGMLPISKPARIRCVEVIDNAISGVLLATVEIAFFQGCLTWLLFRFFKIH- 536 (653)
Q Consensus 458 ~~fli~~vI~l~vlFyLL~sDg~~l~~~l~~llP~~~~~~~~l~~~i~~~i~~~l~G~liiAli~Gilt~Igf~I~GIp- 536 (653)
.+++.+++++++.+||++. |++++.+++.+.+|.+++. .+..+++++.+++|++|++++++++|++++++++++|+|
T Consensus 145 ~~~~~~~~~~li~~ff~l~-d~~~~~~~~~~~~p~~~~~-~~~l~~~~~~~~~Y~~g~~i~~~i~gv~~~i~l~ilgv~~ 222 (344)
T PRK12287 145 SNAMSSIFLLLLTVVFMLL-EVPQLPGKFQQMMARPVEG-MAAIQRALDSVSHYLVLKTAISIITGLVAWAMLAALDVRF 222 (344)
T ss_pred HHHHHHHHHHHHHHHHHHH-ccHHHHHHHHHHcCCchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh
Confidence 3344455677778899999 9999999999999976543 456788888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccchhHHHHHHHHHHHHhhhchHHHHHHHHHHHhh---hcceeccc-cCCCCCCCHHHHHHHHHH
Q 006268 537 FLYMSTTLAFISALFPIFPFWFATIPAAVQLLLESRYIVAISLSVIHLVL---LDYGTCEI-QEDIPGYSPYLTGLSIIG 612 (653)
Q Consensus 537 ~lllg~l~afllslIP~VGp~Iv~IPa~l~lll~g~~~~AI~L~i~~lvv---vdnvL~Pi-~~~ivglhPllilLAIlg 612 (653)
+++||.+++ ++|+|||+||.++++|++++++.+++++.++.+++.+.++ .+|+++|. +++.+++||+++++|++.
T Consensus 223 alllgil~g-lln~IPyiG~~i~~ip~~l~~~~~~~~~~al~v~i~~~iiq~i~~nvi~P~i~g~~v~l~P~~vllsil~ 301 (344)
T PRK12287 223 AFVWGLLAF-ALNYIPNIGSVLAAIPPIIQVLVFNGFYDALLVLAGYLLINLVFGNILEPRIMGRGLGLSTLVVFLSLIF 301 (344)
T ss_pred HHHHHHHHH-HHHhhcchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhcchhhhhhhccCCCCHHHHHHHHHH
Confidence 699998888 5699999999999999999988888877777766554443 29999995 777789999999999999
Q ss_pred HHHhhccccchhhhHHHHHHHHHHHHHHHHH
Q 006268 613 GMTLFPSALEGAIMGPLITTVVIALKDLYVE 643 (653)
Q Consensus 613 G~~lFG~Gl~G~ILGPlIlal~~vl~~ly~e 643 (653)
|+.+|| ++|+++|+|++++++++++.+.+
T Consensus 302 gg~l~G--~~G~ilavPl~~iik~~~~~~~~ 330 (344)
T PRK12287 302 WGWLLG--PVGMLLSVPLTIIVKIALEQTAG 330 (344)
T ss_pred HHHHHH--HhHHHHHHHHHHHHHHHHhcCCC
Confidence 999999 99999999999988888877643
No 7
>KOG2365 consensus Uncharacterized membrane protein [Function unknown]
Probab=97.13 E-value=0.011 Score=67.50 Aligned_cols=78 Identities=65% Similarity=0.951 Sum_probs=70.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHH--HH---HHHHHHHHHHhhhhhhhHHHhhcccccccccccchhhhhhcccCCccch
Q 006268 243 YFTRRILKRLETIVAIGLIVGMMV--VF---LAGIIFFSYKIGVEGKDAVISIKSHVEESNYAERLGVKKWMEENDVPGM 317 (653)
Q Consensus 243 ~~~~~l~~~ld~ivSi~lIl~liv--~~---~~~~vF~~~qi~~E~~~avi~l~~~v~n~t~~~~p~l~~wL~e~d~~~~ 317 (653)
++++-|+..+++++++-.++.+++ +. +.+.+|+-++++.|+++++-.++.|.+..+|.|.-+-++|++|||.+++
T Consensus 362 ~~~~pi~~~~k~L~~id~~v~~~lhd~~Dvl~S~~I~fll~ig~~~~~~~~~~k~H~E~vh~~e~tsn~~n~~~~~~p~~ 441 (808)
T KOG2365|consen 362 YFTRPIMTRLKTLVAIDLIVLMILHDGSDVLLSGVIFFLLKIGVEGKDAVYSLKSHVEEVHYAEKTSNKQNMDENDVPGM 441 (808)
T ss_pred eecccHHHHHHHHHhhchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHhhhhccCCcccchhH
Confidence 345667888999999999999999 77 8899999999999999999999999999999999999999999999886
Q ss_pred hhh
Q 006268 318 VDR 320 (653)
Q Consensus 318 vds 320 (653)
+|-
T Consensus 442 ~d~ 444 (808)
T KOG2365|consen 442 VDM 444 (808)
T ss_pred hhh
Confidence 664
No 8
>PF11744 ALMT: Aluminium activated malate transporter; InterPro: IPR020966 This entry represents an malate transporter which has been is identified as being critical for aluminium tolerance in Arabidopsis thaliana [].; GO: 0010044 response to aluminum ion
Probab=88.85 E-value=28 Score=39.31 Aligned_cols=85 Identities=16% Similarity=0.155 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhcccccc--cccccchhhhhhcccCCccchhhhHHHHHHHHHH--
Q 006268 255 IVAIGLIVGMMVVFLAGIIFFSYKIGVEGKDAVISIKSHVEE--SNYAERLGVKKWMEENDVPGMVDRYTTTFYETVS-- 330 (653)
Q Consensus 255 ivSi~lIl~liv~~~~~~vF~~~qi~~E~~~avi~l~~~v~n--~t~~~~p~l~~wL~e~d~~~~vds~~~~~y~~v~-- 330 (653)
.+.+++.+.+++..+..=+|.+-+.|....+.+-.++..++. +.|-++.+.. ..+-++.-|+-..|.|+.+.
T Consensus 154 ~I~iGv~i~l~vsi~IfPvwAg~~Lh~~~a~~leklA~~le~~v~~y~~~~~~~----~~~~~~~~~~~~~~~yk~vl~S 229 (406)
T PF11744_consen 154 TIVIGVAICLLVSIFIFPVWAGEDLHKLTAKNLEKLANSLEGCVEEYFKCSEDE----ILDYQQESDDPLLQGYKSVLNS 229 (406)
T ss_pred HHHHHHHHHHHHHHheeechhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhc----ccccccccccHHHHhhhHHhCC
Confidence 346777777788877778888889999888877666666554 4444443322 01112234555667888874
Q ss_pred -HHHHhhhhccccee
Q 006268 331 -EQVDSLAMQYNMTE 344 (653)
Q Consensus 331 -e~i~~~~~qyn~te 344 (653)
.+-|+++ .+-.||
T Consensus 230 k~~eesL~-~~A~WE 243 (406)
T PF11744_consen 230 KSQEESLA-NFARWE 243 (406)
T ss_pred cccHHHHh-hhhhhc
Confidence 3455555 333444
No 9
>PF01594 UPF0118: Domain of unknown function DUF20; InterPro: IPR002549 This is a family of hypothetical proteins. A number of the sequence records state they are transmembrane proteins or putative permeases. It is not clear what source suggested that these proteins might be permeases and this information should be treated with caution.
Probab=81.57 E-value=73 Score=33.57 Aligned_cols=44 Identities=18% Similarity=0.409 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhhccchhHhhHHHHhcccccc
Q 006268 87 TLFILYFIFKLLQDYIRPIQWAILLSIPLRGIQQALVAFWSEPLQ 131 (653)
Q Consensus 87 ~~~~ly~~~~l~~~~l~~~~wa~l~s~~lr~~~~~~v~f~~~~~~ 131 (653)
.+++++..+..+++++-|+-||+.++..+++..+.+ +-|.-|-.
T Consensus 7 ~~l~~~~~~~~~~~~~~p~~~a~~la~~~~p~~~~l-~~~~~~r~ 50 (327)
T PF01594_consen 7 LLLLLFLFLWFISPFLLPFVLALVLAYLLNPLVRFL-RRFGIPRS 50 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcH
Confidence 344666777778899999999999999999999999 66655433
No 10
>PF04306 DUF456: Protein of unknown function (DUF456); InterPro: IPR007403 This is a family of putative membrane proteins.
Probab=80.26 E-value=5.5 Score=38.32 Aligned_cols=81 Identities=21% Similarity=0.217 Sum_probs=46.0
Q ss_pred ccccchhHHHHHHHHHHHHhhhch--HHHHH--HHHHHHh--hhcceecccc-CCCCCCCHHHHHHHH---HHHHHhhcc
Q 006268 550 LFPIFPFWFATIPAAVQLLLESRY--IVAIS--LSVIHLV--LLDYGTCEIQ-EDIPGYSPYLTGLSI---IGGMTLFPS 619 (653)
Q Consensus 550 lIP~VGp~Iv~IPa~l~lll~g~~--~~AI~--L~i~~lv--vvdnvL~Pi~-~~ivglhPllilLAI---lgG~~lFG~ 619 (653)
.+| |+.++++-..+|.+.++.. .+..+ ..++.++ +.|++...++ |+ -|.+-.-+.-|+ +.|.-+++
T Consensus 5 ~lP--G~~l~~~g~l~~~~~~g~~~~~~~~l~~~~~l~~l~~~~d~~~~~~~ak~-~G~s~~~~~ga~iG~IvG~f~~~- 80 (140)
T PF04306_consen 5 VLP--GTPLIWLGILLYAFFTGFSEFGWWFLAILAVLALLGEVLDYLAGAYGAKR-FGASRWGIWGAIIGGIVGFFVLP- 80 (140)
T ss_pred cCC--hHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhh-
Confidence 455 7777888888888766543 11111 1111121 2276666663 44 476766666555 44555555
Q ss_pred ccchhhhHHHHHHHHH
Q 006268 620 ALEGAIMGPLITTVVI 635 (653)
Q Consensus 620 Gl~G~ILGPlIlal~~ 635 (653)
..|+++||.+-+.+.
T Consensus 81 -p~G~iiG~~~Ga~l~ 95 (140)
T PF04306_consen 81 -PLGLIIGPFLGAFLG 95 (140)
T ss_pred -HHHHHHHHHHHHHHH
Confidence 668888888777444
No 11
>TIGR03546 conserved hypothetical protein TIGR03546. Members of this family are uncharacterized proteins, usually encoded by a gene adjacent to a member of family TIGR03545, which is also uncharacterized.
Probab=65.67 E-value=36 Score=33.46 Aligned_cols=28 Identities=14% Similarity=0.162 Sum_probs=22.4
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHhhC
Q 006268 621 LEGAIMGPLITTVVIALKDLYVEFVLEE 648 (653)
Q Consensus 621 l~G~ILGPlIlal~~vl~~ly~e~~~~~ 648 (653)
+.|++.|++...+..-+.+.|++.....
T Consensus 115 l~Gli~~~~~Y~ls~~lI~~Yr~~~~~~ 142 (154)
T TIGR03546 115 VVGLILLPPAFAISKVIIAKYRKRIVAW 142 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999988888888888888876543
No 12
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=60.60 E-value=74 Score=30.40 Aligned_cols=37 Identities=22% Similarity=0.177 Sum_probs=21.1
Q ss_pred HHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHhh
Q 006268 611 IGGMTLFPSALEGAIMGPLITTVVIALKDLYVEFVLE 647 (653)
Q Consensus 611 lgG~~lFG~Gl~G~ILGPlIlal~~vl~~ly~e~~~~ 647 (653)
.+-..+.|+-+.|.+.|++.-.+..-+.+.|++.-.+
T Consensus 116 ~~~~~~~G~~i~~~v~~~i~Y~l~~~~~~~~r~~r~~ 152 (154)
T PF09835_consen 116 FGLPFLLGSLILGIVLGIISYFLVYFLVRKYRKRRRK 152 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344423456666666666666677777665543
No 13
>TIGR02872 spore_ytvI sporulation integral membrane protein YtvI. Three lines of evidence show this protein to be involved in sporulation. First, it is under control of a sporulation-specific sigma factor, sigma-E. Second, mutation leads to a sporulation defect. Third, it if found in exactly those genomes whose bacteria are capable of sporulation, except for being absent in Clostridium acetobutylicum ATCC824. This protein has extensive hydrophobic regions and is likely an integral membrane protein.
Probab=52.90 E-value=3e+02 Score=29.01 Aligned_cols=34 Identities=6% Similarity=0.091 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006268 498 IRCVEVIDNAISGVLLATVEIAFFQGCLTWLLFR 531 (653)
Q Consensus 498 ~~l~~~i~~~i~~~l~G~liiAli~Gilt~Igf~ 531 (653)
++..+.+.+.+...+.+.+.--++.+++.++..+
T Consensus 191 ~~~~~~i~~~i~~~~~~y~~~~~~~~~i~g~~~~ 224 (341)
T TIGR02872 191 SQKLKNIFSELKKAAFGFLKAQLILVLITFVIVL 224 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666666666655555543
No 14
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=52.76 E-value=59 Score=32.39 Aligned_cols=26 Identities=35% Similarity=0.717 Sum_probs=16.6
Q ss_pred chhHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 006268 69 PQVRLALYIALAHAGLAFTLFILYFIFKLL 98 (653)
Q Consensus 69 ~~~~~~~~~a~ah~g~a~~~~~ly~~~~l~ 98 (653)
|-.+-++|+.++ +.+++++||+.+.+
T Consensus 92 ~~l~R~~~Vl~g----~s~l~i~yfvir~~ 117 (163)
T PF06679_consen 92 PMLKRALYVLVG----LSALAILYFVIRTF 117 (163)
T ss_pred cchhhhHHHHHH----HHHHHHHHHHHHHH
Confidence 345777777765 45566777777644
No 15
>PF15110 TMEM141: TMEM141 protein family; PDB: 2LOR_A.
Probab=47.27 E-value=19 Score=32.69 Aligned_cols=39 Identities=33% Similarity=0.622 Sum_probs=30.6
Q ss_pred HHH-HHHhh---HHHHHHH---HHHHHHHHHHhhhh-hHHHHHHhhc
Q 006268 75 LYI-ALAHA---GLAFTLF---ILYFIFKLLQDYIR-PIQWAILLSI 113 (653)
Q Consensus 75 ~~~-a~ah~---g~a~~~~---~ly~~~~l~~~~l~-~~~wa~l~s~ 113 (653)
-|. .|+|| |++.-++ ..|++-+++|..++ |.||.+|.|+
T Consensus 19 ~Ya~CqS~Af~kG~~tFv~G~~~~f~~Q~~iqrrlpYp~q~~~LVS~ 65 (94)
T PF15110_consen 19 EYAACQSRAFMKGLFTFVLGTGATFFLQKAIQRRLPYPFQWNILVSV 65 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHTTSSSSS-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhCCCCCCchhHHHH
Confidence 344 48888 8888777 88999999988776 9999998765
No 16
>TIGR00727 ISP4_OPT small oligopeptide transporter, OPT family. This model represents a family of transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. A set of related proteins from the plant Arabidopsis thaliana forms an outgroup to the yeast set by neighbor joining analysis but is remarkably well conserved and is predicted here to have equivalent function.
Probab=46.51 E-value=2.5e+02 Score=34.01 Aligned_cols=139 Identities=10% Similarity=-0.012 Sum_probs=82.0
Q ss_pred HHHHHHHcChhhHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHH
Q 006268 470 VLYYLITSESGGVTEQVMGMLPISKPARIRCVEVIDNAISGVLLATVEIAFFQGCLTWLLFRFFKIH--FLYMSTTLAFI 547 (653)
Q Consensus 470 vlFyLL~sDg~~l~~~l~~llP~~~~~~~~l~~~i~~~i~~~l~G~liiAli~Gilt~Igf~I~GIp--~lllg~l~afl 547 (653)
+++-++. +++.+.+..++ ...++...|+.++-+++=.....+.+++++..|+.+.... =.++| .+++++.++++
T Consensus 360 i~h~~l~-~~~~i~~~~~~--~~~~D~h~rlM~~Y~evP~WWy~~~l~is~~~~~~~v~~~-~t~lP~W~~~lal~l~~i 435 (681)
T TIGR00727 360 ITHSIIV-HGKLLFNALKD--DDYPDPHSNLMKAYKEVPDWWYLAVFLGFFGMGIATVEHW-PTETPVWGLFVCLIFNFV 435 (681)
T ss_pred HHHHHHH-hhHHHHHHHhc--CCCCChhHHHhhcCCCCcHHHHHHHHHHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHH
Confidence 3455555 78888888864 2222334556666566666667777888888886655554 45888 47777777765
Q ss_pred hcccccchhH---------HHHHHHHHHH-HhhhchHHHHHHHHHHHhhh---cceecc-ccCCCCCCCHHHHHHHHHHH
Q 006268 548 SALFPIFPFW---------FATIPAAVQL-LLESRYIVAISLSVIHLVLL---DYGTCE-IQEDIPGYSPYLTGLSIIGG 613 (653)
Q Consensus 548 lslIP~VGp~---------Iv~IPa~l~l-ll~g~~~~AI~L~i~~lvvv---dnvL~P-i~~~ivglhPllilLAIlgG 613 (653)
-.+|. |-. +..+-=.+.. +..|++.....+-.++.... .+++.- .++.-.+++|=.++.+-+.|
T Consensus 436 -~~iP~-~~i~a~t~~~~~ln~l~eli~Gy~~PG~p~a~~~fk~~g~~~~~qa~~~~~DlKlGhY~kiPPR~~F~~Q~~g 513 (681)
T TIGR00727 436 -FLIPT-TILQATTNISFGLNVLTEFIVGYALPGRPLAMMIFKTFGYITDGQADNFVSDLKIGHYMKIPPRALFRGQCVA 513 (681)
T ss_pred -HHHhh-hheEeecCCccchhHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcHHHHHHHHHH
Confidence 35663 321 1111111221 23455554444444443322 445544 35666789999999998877
Q ss_pred H
Q 006268 614 M 614 (653)
Q Consensus 614 ~ 614 (653)
.
T Consensus 514 t 514 (681)
T TIGR00727 514 T 514 (681)
T ss_pred H
Confidence 6
No 17
>PF09546 Spore_III_AE: Stage III sporulation protein AE (spore_III_AE); InterPro: IPR014194 This entry represents the stage III sporulation protein AE, which is encoded in a spore formation operon spoIIIAABCDEFGH under the control of sigma G []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=46.07 E-value=4.4e+02 Score=28.95 Aligned_cols=100 Identities=12% Similarity=0.080 Sum_probs=58.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcChhhHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006268 453 GAAEVFNFVSQLMIFLWVLYYLITSESGGVTEQVMGMLPISKPARIRCVEVIDNAISGVLLATVEIAFFQGCLTWLLFRF 532 (653)
Q Consensus 453 ~g~~v~~fli~~vI~l~vlFyLL~sDg~~l~~~l~~llP~~~~~~~~l~~~i~~~i~~~l~G~liiAli~Gilt~Igf~I 532 (653)
+...+...++.-++++.+.+|+.. +-+.++.| +....++.+-+++.+...+... ..++.|+.+.=|+.-
T Consensus 136 ~~i~~~~~l~~~vllPli~~~~~l-------~i~n~is~--e~~ls~la~ll~~~~~w~l~~~--ltvf~Gi~~iqg~~~ 204 (328)
T PF09546_consen 136 FLIYVVEWLIKNVLLPLIFIYIVL-------SIVNNISK--EFKLSKLAELLKKVILWSLGTM--LTVFVGILTIQGMIA 204 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhcCc--cccHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 344556666677788888888876 34444443 2345566666666665554443 445555555555555
Q ss_pred hcccHHHHHHHHHHHhcccccchhHHHHHHH
Q 006268 533 FKIHFLYMSTTLAFISALFPIFPFWFATIPA 563 (653)
Q Consensus 533 ~GIp~lllg~l~afllslIP~VGp~Iv~IPa 563 (653)
--.|.+-.-+.-....++||++|-.+.-.--
T Consensus 205 ~~~D~v~~rtak~~~~~~IPvVG~~~sda~~ 235 (328)
T PF09546_consen 205 PAADGVKLRTAKFATGNFIPVVGKALSDAAE 235 (328)
T ss_pred HHhhHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 4455444333333345899999999875543
No 18
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.70 E-value=66 Score=34.81 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 006268 70 QVRLALYIALAHAGLAFTLFILYFIFKLLQDYIRPIQWA 108 (653)
Q Consensus 70 ~~~~~~~~a~ah~g~a~~~~~ly~~~~l~~~~l~~~~wa 108 (653)
-.|-.=|++||-++.- +.|+.|.+++.|..|..-.
T Consensus 80 ~~rwrdy~vmAvi~aG----i~y~~y~~~K~YV~P~~l~ 114 (300)
T KOG2629|consen 80 LRRWRDYFVMAVILAG----IAYAAYRFVKSYVLPRFLG 114 (300)
T ss_pred hhhHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHhhC
Confidence 4577889988876333 7899999999999998755
No 19
>COG4129 Predicted membrane protein [Function unknown]
Probab=44.88 E-value=1.5e+02 Score=32.76 Aligned_cols=60 Identities=15% Similarity=0.101 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcccc------------cchhHHHHHHHHHHHHhhhch
Q 006268 512 LLATVEIAFFQGCLTWLLFRFFKIHFLYMSTTLAFISALFP------------IFPFWFATIPAAVQLLLESRY 573 (653)
Q Consensus 512 l~G~liiAli~Gilt~Igf~I~GIp~lllg~l~afllslIP------------~VGp~Iv~IPa~l~lll~g~~ 573 (653)
..-++++++..++..++.. ++|.|....|.+.|. +++=| ++|..++.+.+.+...+.|..
T Consensus 10 g~RtlKt~ia~~La~~ia~-~l~~~~~~~A~i~AV-~~l~~t~~~s~~~~~~r~~g~~iG~~~a~l~~~l~g~~ 81 (332)
T COG4129 10 GARTLKTGLAAGLALLIAH-LLGLPQPAFAGISAV-LCLSPTIKRSLKRALQRLLGNALGAILAVLFFLLFGQN 81 (332)
T ss_pred HHHHHHHHHHHHHHHHHHH-HhCCCchHHHHHHHh-hcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 3456788888888889988 999997666667774 46666 457777777777766555543
No 20
>PF10691 DUF2497: Protein of unknown function (DUF2497) ; InterPro: IPR019632 Members of this family belong to the Alphaproteobacteria. The function of the family is not known.
Probab=42.79 E-value=11 Score=32.64 Aligned_cols=22 Identities=41% Similarity=0.931 Sum_probs=17.3
Q ss_pred chhhhhhcccCCccchhhhHHHH
Q 006268 302 RLGVKKWMEENDVPGMVDRYTTT 324 (653)
Q Consensus 302 ~p~l~~wL~e~d~~~~vds~~~~ 324 (653)
+|-+|+||++| .+..|+..+.+
T Consensus 44 RPmLkeWLD~n-LP~lVErlVr~ 65 (73)
T PF10691_consen 44 RPMLKEWLDEN-LPGLVERLVRE 65 (73)
T ss_pred HHHHHHHHHhc-cHHHHHHHHHH
Confidence 78999999999 87766665543
No 21
>TIGR02829 spore_III_AE stage III sporulation protein AE. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is found in a spore formation operon and is designated stage III sporulation protein AE.
Probab=39.78 E-value=6e+02 Score=28.69 Aligned_cols=99 Identities=9% Similarity=0.022 Sum_probs=56.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcChhhHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006268 453 GAAEVFNFVSQLMIFLWVLYYLITSESGGVTEQVMGMLPISKPARIRCVEVIDNAISGVLLATVEIAFFQGCLTWLLFRF 532 (653)
Q Consensus 453 ~g~~v~~fli~~vI~l~vlFyLL~sDg~~l~~~l~~llP~~~~~~~~l~~~i~~~i~~~l~G~liiAli~Gilt~Igf~I 532 (653)
+...+.+.++.-++++.+.+|++. +-+.++.+ +....++.+-+++.+...+ |. ..+++.|+.+-=|+.-
T Consensus 192 ~~i~~~~~li~~vllPli~i~~vl-------~ivn~ls~--e~~lskLa~llk~~~~w~l-g~-~ltif~Gi~~IQG~~~ 260 (381)
T TIGR02829 192 FSINTTGKVITNIVIPLILLSFVL-------SIVNNISD--EYKIDKLSKFLKQISIGSQ-GV-FLTIFLGVITIQGITA 260 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhCCc--hhhHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHH
Confidence 334455566666677777777776 23333432 2334556666665554432 22 3555666666666655
Q ss_pred hcccHHHHHHHHHHHhcccccchhHHHHHH
Q 006268 533 FKIHFLYMSTTLAFISALFPIFPFWFATIP 562 (653)
Q Consensus 533 ~GIp~lllg~l~afllslIP~VGp~Iv~IP 562 (653)
--.+.+-..+.--..-++||++|-.+.-.-
T Consensus 261 ~~~D~v~~ktakf~v~~fIPvVG~~~sda~ 290 (381)
T TIGR02829 261 AVADGVTVKTAKFAVGNFVPVVGKMLTDAV 290 (381)
T ss_pred HhhhHHHHHHHHHHhccCCCccchHHHHHH
Confidence 556655554433323389999999886554
No 22
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=37.21 E-value=41 Score=38.24 Aligned_cols=46 Identities=30% Similarity=0.457 Sum_probs=23.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCchhHHHHHHHHH
Q 006268 33 PSATSNSQAPLPESHAPPPSQANSTAPGQKTTCSGDPQVRLALYIALA 80 (653)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a 80 (653)
|...++...||||+|+|||++--.. +.....+.+++-|=|++.-+.
T Consensus 227 ~~~~s~~g~PPPPPP~PPp~~~~~~--~~~~~~~~~k~~~~AlFaqlN 272 (480)
T KOG2675|consen 227 PKAASAPGAPPPPPPAPPPAPFFAD--SNPPSSDANKGGRGALFAQLN 272 (480)
T ss_pred cCcccCCCCCCCCCCCCCCcccccc--cCCCCcccccccHHHHHHHHh
Confidence 4444444566666666666553221 111123455666777765544
No 23
>COG2839 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.30 E-value=1.8e+02 Score=28.75 Aligned_cols=50 Identities=24% Similarity=0.331 Sum_probs=29.6
Q ss_pred cceecccc-CCC--CCCCHHHHHHHHHHHHHh-hccccchhhhHHHHHHHHHHHHH
Q 006268 588 DYGTCEIQ-EDI--PGYSPYLTGLSIIGGMTL-FPSALEGAIMGPLITTVVIALKD 639 (653)
Q Consensus 588 dnvL~Pi~-~~i--vglhPllilLAIlgG~~l-FG~Gl~G~ILGPlIlal~~vl~~ 639 (653)
||+-.-.+ |+. .+---.-.+++.+.|... .+ ..|+++||.+.+++..+..
T Consensus 65 D~vA~~~g~kr~GgsK~a~~gAliG~iiG~Fi~lP--~~gii~gPfiga~v~ElI~ 118 (160)
T COG2839 65 DYVANIWGVKRYGGSKAAVWGALIGLIIGIFISLP--PFGIILGPFIGAFVGELIE 118 (160)
T ss_pred HHHHHHhhHHhcCCcHHHHHHHHHHHHHhheeecC--ccceehhhhHHHHHHHHHH
Confidence 66655532 221 133445556666666643 33 5689999999987765543
No 24
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=34.92 E-value=5.1e+02 Score=27.29 Aligned_cols=100 Identities=19% Similarity=0.218 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhhhhhHHHHHHhhccchhHhhHHHHhccc-------------cccchhhHHHhhhhHHHHHhhhhhHHhH
Q 006268 90 ILYFIFKLLQDYIRPIQWAILLSIPLRGIQQALVAFWSE-------------PLQLGLTETVLAVPVAIFKVFVGTLVDI 156 (653)
Q Consensus 90 ~ly~~~~l~~~~l~~~~wa~l~s~~lr~~~~~~v~f~~~-------------~~~~gl~~~~~~~~~~~~~~~~~~~~~~ 156 (653)
++++.+=+|.-.+--+.|.+ .|-|+.|++|-+-+.+ |.+.--.+....--...-....+.++++
T Consensus 76 ~l~~~Gglwy~~lsl~~~~l---~p~r~~rqaLa~~y~~lA~yl~~ka~~~~p~~~~~~~~~~~~l~~~q~~v~~~~~~~ 152 (284)
T PF12805_consen 76 LLFLAGGLWYLLLSLLWWPL---RPYRPVRQALAECYRALADYLRAKARFFDPDQHDDDEQLRIELAQQQIKVNEALEQA 152 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666777776 4788888888777654 3332223333221112234566777777
Q ss_pred HHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHhh
Q 006268 157 KEVFFKVFLKKLKNNGPRHSRSGFSKLVRWLVSFAVFVIAYETI 200 (653)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~~~~~ 200 (653)
|+. ++++-+.++ ++.+. +.-|++.-|..-+=++|++
T Consensus 153 R~~----l~~~r~~~~-~~~~~---~~~~ll~~~~~a~Dl~E~~ 188 (284)
T PF12805_consen 153 REL----LLRRRRSGR-GKPST---YGRRLLLLFFEAVDLFERA 188 (284)
T ss_pred HHH----HHHhhcccC-CCCCc---HHHHHHHHHHHHHHHHHHH
Confidence 777 554432211 10111 2334555555555557764
No 25
>KOG2262 consensus Sexual differentiation process protein ISP4 [Signal transduction mechanisms]
Probab=32.55 E-value=5.7e+02 Score=31.12 Aligned_cols=142 Identities=12% Similarity=0.066 Sum_probs=91.0
Q ss_pred HHHcChhhHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhccc--HHHHHHHHHHHhcc
Q 006268 474 LITSESGGVTEQVMGMLPISKPARIRCVEVIDNAISGVLLATVEIAFFQGCLTWLLFR-FFKIH--FLYMSTTLAFISAL 550 (653)
Q Consensus 474 LL~sDg~~l~~~l~~llP~~~~~~~~l~~~i~~~i~~~l~G~liiAli~Gilt~Igf~-I~GIp--~lllg~l~afllsl 550 (653)
+|. +|..+.++.++-.....+--.|+.++-+++=...+...++.++..|+.+..++- .+.+| ++++++.++++ ..
T Consensus 409 ~Lf-~gkdiw~~~~~~~~k~~DiHtrlMkkYKeVP~WWf~~ili~s~~l~~~~~~~~~~~~q~PwWg~~va~~ia~v-f~ 486 (761)
T KOG2262|consen 409 ALF-NGKDIWQQTKKAFNKKMDIHTRLMKKYKEVPDWWFLAILIVSLGLGLAACEGYKTQVQLPWWGLLVACAIAFV-FT 486 (761)
T ss_pred eee-ccHHHHHHHHhccccCCCHHHHHHHHhccCcHHHHHHHHHHHHHHHhhheeeecccccCchHHHHHHHHHHHH-Hh
Confidence 344 888899998887633334446778777777778888888888888888777774 35888 58888888865 68
Q ss_pred cccchhHHHHH---H------HHHHH-HhhhchHHHHHHHHHHHhhh---cceeccc-cCCCCCCCHHHHHHHHHHHHHh
Q 006268 551 FPIFPFWFATI---P------AAVQL-LLESRYIVAISLSVIHLVLL---DYGTCEI-QEDIPGYSPYLTGLSIIGGMTL 616 (653)
Q Consensus 551 IP~VGp~Iv~I---P------a~l~l-ll~g~~~~AI~L~i~~lvvv---dnvL~Pi-~~~ivglhPllilLAIlgG~~l 616 (653)
||+ |-+-+.- | =.+.. +.-|.+..-+.+=.++.+.+ .++++-+ .+.-+++||-.++.+-+.|.-+
T Consensus 487 iPi-gii~AtTNq~~GLNiitE~i~Gy~~PgrPiAn~~FK~yGyism~Qal~f~~DlKlghYMKIPPR~mF~~Q~v~tiv 565 (761)
T KOG2262|consen 487 IPI-GIIQATTNQTPGLNIITEYIIGYIYPGRPIANLCFKTYGYISMTQALTFLQDLKLGHYMKIPPRSMFAVQLVGTIV 565 (761)
T ss_pred ccH-HHhhhhccCCccHHHHHHHHHHhhcCCchHHHHHHHHhchhhHHHHHHHHhhccceeeecCChHHHHHHHHHHHHh
Confidence 884 5442211 1 01111 23355543333334444333 4555553 5666789999999998887755
Q ss_pred hc
Q 006268 617 FP 618 (653)
Q Consensus 617 FG 618 (653)
-|
T Consensus 566 s~ 567 (761)
T KOG2262|consen 566 AG 567 (761)
T ss_pred he
Confidence 44
No 26
>PF15361 RIC3: Resistance to inhibitors of cholinesterase homologue 3
Probab=29.85 E-value=1.6e+02 Score=28.84 Aligned_cols=15 Identities=47% Similarity=0.946 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 006268 84 LAFTLFILYFIFKLL 98 (653)
Q Consensus 84 ~a~~~~~ly~~~~l~ 98 (653)
....++++|.++|+.
T Consensus 91 iGI~~f~lY~l~Ki~ 105 (152)
T PF15361_consen 91 IGIVLFILYTLFKIK 105 (152)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444555555543
No 27
>COG0628 yhhT Predicted permease, member of the PurR regulon [General function prediction only]
Probab=29.65 E-value=7.5e+02 Score=26.77 Aligned_cols=36 Identities=11% Similarity=0.008 Sum_probs=19.1
Q ss_pred HHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHH
Q 006268 608 LSIIGGMTLFPSALEGAIMGPLITTVVIALKDLYVEFV 645 (653)
Q Consensus 608 LAIlgG~~lFG~Gl~G~ILGPlIlal~~vl~~ly~e~~ 645 (653)
+.++.+...+| -.+-+.|-.+...+.++.+..-+..
T Consensus 305 ~~ilisll~g~--~l~G~~G~ila~pl~~~~k~~~~~~ 340 (355)
T COG0628 305 LVILLSLLGGG--SLFGFVGLILAPPLAAVLKVLLRAW 340 (355)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555665555 5555666666555555444443333
No 28
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=28.34 E-value=2.4e+02 Score=35.79 Aligned_cols=66 Identities=24% Similarity=0.372 Sum_probs=38.7
Q ss_pred hhccchhHhhHHHHhccccccchhhHHHhhhhHHHHHhhhhhHHhHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHH
Q 006268 111 LSIPLRGIQQALVAFWSEPLQLGLTETVLAVPVAIFKVFVGTLVDIKEVFFKVFLKKLKNNGPRHSRSGFSKLVRWLVS 189 (653)
Q Consensus 111 ~s~~lr~~~~~~v~f~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 189 (653)
-++|||+++.++++=-.+.|----.+.+.++| +..|.|-|..+=.-+.| .+..|.+|--++-+-+.
T Consensus 116 ~~~~LrG~a~aiAkNM~aSL~vPtaTsvr~Ip-------~k~L~dnR~~In~~l~r------~~GgKVSFThlI~kAvv 181 (1228)
T PRK12270 116 EVTPLRGAAAAVAKNMDASLEVPTATSVRAVP-------AKLLIDNRIVINNHLKR------TRGGKVSFTHLIGYALV 181 (1228)
T ss_pred ceeecccHHHHHHHHHHhhhccCceeeeeccc-------HHHHHHHHHHHHHHhhh------ccCCcccHHHHHHHHHH
Confidence 46899999999998766554333333333333 33456666653222221 12288889888777653
No 29
>PRK10983 putative inner membrane protein; Provisional
Probab=25.56 E-value=5.4e+02 Score=28.54 Aligned_cols=40 Identities=20% Similarity=0.351 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHhhccchhHhhHH
Q 006268 83 GLAFTLFILYFIFKLLQDYIRPIQWAILLSIPLRGIQQAL 122 (653)
Q Consensus 83 g~a~~~~~ly~~~~l~~~~l~~~~wa~l~s~~lr~~~~~~ 122 (653)
-+++.+++++..+.+++.|+.|+-||+..+..+||.++.+
T Consensus 16 ~~~l~~~l~~~~~~il~pFl~~ll~A~iLa~a~~Pl~~~L 55 (368)
T PRK10983 16 SVLFIAIMIVACFWVVQPFILGFAWAGMVVIATWPLLLKL 55 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556677888899999999999999888888877654
No 30
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=25.51 E-value=1.9e+02 Score=33.98 Aligned_cols=24 Identities=17% Similarity=0.153 Sum_probs=19.1
Q ss_pred cccccchhhhhhcccCCccchhhh
Q 006268 297 SNYAERLGVKKWMEENDVPGMVDR 320 (653)
Q Consensus 297 ~t~~~~p~l~~wL~e~d~~~~vds 320 (653)
++++++|++++|++.++-+..+-.
T Consensus 54 r~vA~~p~v~e~l~~~~~~~~iq~ 77 (537)
T COG3290 54 RTVASNPEVIEALENKDQEARIQA 77 (537)
T ss_pred HHHhcCHHHHHHHhcCCcchhHHH
Confidence 899999999999999976443333
No 31
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=23.63 E-value=2e+02 Score=29.01 Aligned_cols=51 Identities=20% Similarity=0.281 Sum_probs=29.2
Q ss_pred cCCCCCCCHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHH-HHHHHHHHhhCCC
Q 006268 595 QEDIPGYSPYLTGLSIIGGMTLFPSALEGAIMGPLITTVVIAL-KDLYVEFVLEEPK 650 (653)
Q Consensus 595 ~~~ivglhPllilLAIlgG~~lFG~Gl~G~ILGPlIlal~~vl-~~ly~e~~~~~~~ 650 (653)
.+.+.|+.|+++.-....+. |..|-++||.+-..+.-+ .+-+...+..+++
T Consensus 68 ~~~I~GlDP~~~~g~~t~a~-----g~lG~L~GP~~G~~vf~l~~r~~~~~~~~Ke~ 119 (173)
T PF08566_consen 68 TQQIMGLDPFMVYGLATLAC-----GALGWLVGPSLGNQVFRLLNRKYLKQMDAKEK 119 (173)
T ss_pred cccccCcCHHHHHHHHHHHH-----HHHHHHhcchHHHHHHHHHhHHHHHHHHHHHH
Confidence 45557889987654332222 378999999986644333 2334444444443
No 32
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=22.60 E-value=2.5e+02 Score=27.99 Aligned_cols=7 Identities=29% Similarity=0.525 Sum_probs=4.6
Q ss_pred cchhhHH
Q 006268 131 QLGLTET 137 (653)
Q Consensus 131 ~~gl~~~ 137 (653)
|||++.+
T Consensus 128 kYgvl~~ 134 (163)
T PF06679_consen 128 KYGVLTT 134 (163)
T ss_pred eecccCC
Confidence 6777654
No 33
>PF08999 SP_C-Propep: Surfactant protein C, N terminal propeptide; InterPro: IPR015091 The N-terminal propeptide of surfactant protein C adopts an alpha-helical structure, with turn and extended regions. Its main function is the stabilisation of metastable surfactant protein C (SP-C), since the latter can irreversibly transform from its native alpha-helical structure to beta-sheet aggregates and form amyloid-like fibrils. The correct intracellular trafficking of proSP-C has also been reported to depend on the propeptide []. ; PDB: 1SPF_A 2YAD_F.
Probab=21.14 E-value=1.5e+02 Score=26.49 Aligned_cols=54 Identities=19% Similarity=0.104 Sum_probs=18.6
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhcccccccccccchhhhhhcccC
Q 006268 247 RILKRLETIVAIGLIVGMMVVFLAGIIFFSYKIGVEGKDAVISIKSHVEESNYAERLGVKKWMEEN 312 (653)
Q Consensus 247 ~l~~~ld~ivSi~lIl~liv~~~~~~vF~~~qi~~E~~~avi~l~~~v~n~t~~~~p~l~~wL~e~ 312 (653)
.+++-+=.++-++++...++|.++.-++.+ |=|.|.+-. .++ +.||-+|||--+
T Consensus 32 ~lKrlliivvVvVlvVvvivg~LLMGLhms-qkHTe~Vle-Msi----------~Gp~~qqrLaL~ 85 (93)
T PF08999_consen 32 NLKRLLIIVVVVVLVVVVIVGALLMGLHMS-QKHTEMVLE-MSI----------GGPESQQRLALS 85 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------
T ss_pred ccceEEEEEEeeehhHHHHHHHHHHHhhhh-hhhhHHHHh-hhc----------cCCcchhhcccc
Confidence 456666677777788888888888877665 667777742 132 337778887654
No 34
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=20.93 E-value=3.7e+02 Score=23.30 Aligned_cols=62 Identities=18% Similarity=0.302 Sum_probs=44.1
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhcccccc-cccccchhhhhhcccCCc
Q 006268 249 LKRLETIVAIGLIVGMMVVFLAGIIFFSYKIGVEGKDAVISIKSHVEE-SNYAERLGVKKWMEENDV 314 (653)
Q Consensus 249 ~~~ld~ivSi~lIl~liv~~~~~~vF~~~qi~~E~~~avi~l~~~v~n-~t~~~~p~l~~wL~e~d~ 314 (653)
++.+..+..++.++++++|...-++..++-++.=|. ++ .+---+=| .-|..||. +|+|....
T Consensus 10 e~l~~~il~~~~iisfi~Gy~~q~~~~~~~~~~~g~-~~-~~lv~vP~Wp~y~r~p~--~W~~~~~~ 72 (76)
T PF06645_consen 10 EKLMQYILIISAIISFIVGYITQSFSYTFYIYGAGV-VL-TLLVVVPPWPFYNRHPL--KWLPPKPE 72 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-HHhheeCCcHhhcCCcc--cCCCCCcc
Confidence 445667888888999999999999999999998888 33 33333333 34555654 79998743
No 35
>PF07319 DnaI_N: Primosomal protein DnaI N-terminus; InterPro: IPR009928 This entry represents the N terminus (approximately 120 residues) of bacterial primosomal DnaI proteins, although one family member appears to be of viral origin. DnaI is one of the components of the Bacillus subtilis replication restart primosome, and is required for the DnaB75-dependent loading of the DnaC helicase [].; PDB: 2K7R_A.
Probab=20.20 E-value=55 Score=29.21 Aligned_cols=35 Identities=26% Similarity=0.481 Sum_probs=27.4
Q ss_pred cccccchhhhhhcccC--Cc-cchhhhHHHHHHHHHHH
Q 006268 297 SNYAERLGVKKWMEEN--DV-PGMVDRYTTTFYETVSE 331 (653)
Q Consensus 297 ~t~~~~p~l~~wL~e~--d~-~~~vds~~~~~y~~v~e 331 (653)
+.+-++|++++++.+| ++ +++|+.=..+.||++.|
T Consensus 26 ~~vl~dp~V~~Fl~~h~~eLt~~~i~rsl~kLyEy~~e 63 (94)
T PF07319_consen 26 QEVLSDPEVQAFLQEHQPELTQEMIERSLSKLYEYVSE 63 (94)
T ss_dssp HHHTT-HHHHHHHHHSTTT--HHHHHHTHHHHHHHHHS
T ss_pred HHHHcCHHHHHHHHHhHHhcCHHHHHHHHHHHHHHHHH
Confidence 4556889999999999 66 44888889999999877
Done!