Query 006268
Match_columns 653
No_of_seqs 311 out of 1700
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 20:28:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006268.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006268hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lor_A Transmembrane protein 1 57.1 3.1 0.00011 37.0 0.0 38 76-113 23-68 (108)
2 2k7r_A Primosomal protein DNAI 30.5 17 0.00059 31.8 1.3 35 297-331 26-63 (106)
3 3um7_A Potassium channel subfa 28.5 26 0.00088 36.6 2.5 18 83-100 30-47 (309)
4 3ueb_A Putative uncharacterize 17.0 71 0.0024 27.9 2.5 28 312-339 78-105 (110)
5 4av3_A K(+)-stimulated pyropho 15.9 6.8E+02 0.023 29.1 10.9 43 491-533 38-80 (735)
6 4av3_A K(+)-stimulated pyropho 14.1 1.3E+03 0.043 26.9 12.5 35 498-532 493-527 (735)
7 2kv5_A FST, putative uncharact 12.8 81 0.0028 22.6 1.4 22 622-643 5-26 (33)
8 3ee4_A Probable ribonucleoside 12.1 4.1E+02 0.014 27.4 7.2 38 272-312 100-137 (323)
9 3mp7_B Preprotein translocase 11.8 3.1E+02 0.011 21.9 4.7 29 154-187 9-37 (61)
10 2oar_A Large-conductance mecha 9.9 3.7E+02 0.013 25.9 5.4 52 456-509 94-145 (174)
No 1
>2lor_A Transmembrane protein 141; helical bundle; NMR {Homo sapiens}
Probab=57.05 E-value=3.1 Score=37.00 Aligned_cols=38 Identities=24% Similarity=0.554 Sum_probs=32.4
Q ss_pred HH-HHHhh---HHHHHHH---HHHHHHHHHHhhhh-hHHHHHHhhc
Q 006268 76 YI-ALAHA---GLAFTLF---ILYFIFKLLQDYIR-PIQWAILLSI 113 (653)
Q Consensus 76 ~~-a~ah~---g~a~~~~---~ly~~~~l~~~~l~-~~~wa~l~s~ 113 (653)
|. .|+|| |++.-++ ..|++-+++|..++ |+||.+|.|+
T Consensus 23 Y~~CqS~Af~~Gl~tF~lG~~~~f~~Q~~vqrklpYp~qwniLVs~ 68 (108)
T 2lor_A 23 YAACQSHAFMKGVFTFVTGTGMAFGLQMFIQRKFPYPLQWSLLVAV 68 (108)
Confidence 44 58888 9988777 88999999999987 9999999765
No 2
>2k7r_A Primosomal protein DNAI; DNAI N-terminal domain, helicase-loading protein, ATP- binding, DNA replication, nucleotide-binding, primosome; NMR {Bacillus subtilis}
Probab=30.45 E-value=17 Score=31.76 Aligned_cols=35 Identities=17% Similarity=0.417 Sum_probs=29.4
Q ss_pred cccccchhhhhhcccC--Cc-cchhhhHHHHHHHHHHH
Q 006268 297 SNYAERLGVKKWMEEN--DV-PGMVDRYTTTFYETVSE 331 (653)
Q Consensus 297 ~t~~~~p~l~~wL~e~--d~-~~~vds~~~~~y~~v~e 331 (653)
+.+.++|++++++.++ ++ +++|+.-..+.||++.|
T Consensus 26 ~~vl~dP~V~~Fl~~h~~~l~~~~I~~s~~kL~ey~~e 63 (106)
T 2k7r_A 26 EKVMKDQDVQAFLKENEEVIDQKMIEKSLNKLYEYIEQ 63 (106)
T ss_dssp HHHTTCHHHHHHHHHSTTTCCHHHHHHTHHHHHHHHHS
T ss_pred HHHHcCHHHHHHHHHChhhCCHHHHHhhHHHHHHHHHH
Confidence 4567899999999999 67 44889989999999876
No 3
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=28.52 E-value=26 Score=36.57 Aligned_cols=18 Identities=11% Similarity=0.248 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 006268 83 GLAFTLFILYFIFKLLQD 100 (653)
Q Consensus 83 g~a~~~~~ly~~~~l~~~ 100 (653)
...++++++|..|+++-.
T Consensus 30 ~~~l~Ll~~~~~YL~~GA 47 (309)
T 3um7_A 30 TTLLALLALVLLYLVSGA 47 (309)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555677888999987654
No 4
>3ueb_A Putative uncharacterized protein; alpha and beta protein (A+B), unknown function; 1.98A {Thermococcus onnurineus}
Probab=17.04 E-value=71 Score=27.93 Aligned_cols=28 Identities=25% Similarity=0.394 Sum_probs=24.2
Q ss_pred CCccchhhhHHHHHHHHHHHHHHhhhhc
Q 006268 312 NDVPGMVDRYTTTFYETVSEQVDSLAMQ 339 (653)
Q Consensus 312 ~d~~~~vds~~~~~y~~v~e~i~~~~~q 339 (653)
-|+++.+|..++++|+.+-+.++.+|.+
T Consensus 78 VDVe~lideA~e~AYe~VE~~Lreia~~ 105 (110)
T 3ueb_A 78 VDVDKLIDEAVERAYEIVERKLREIANE 105 (110)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EcHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3778899999999999999999988854
No 5
>4av3_A K(+)-stimulated pyrophosphate-energized sodium PU; hydrolase, membrane pyrophosphotase, ION pump; 2.60A {Thermotoga maritima} PDB: 4av6_A
Probab=15.88 E-value=6.8e+02 Score=29.12 Aligned_cols=43 Identities=14% Similarity=0.149 Sum_probs=31.6
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006268 491 PISKPARIRCVEVIDNAISGVLLATVEIAFFQGCLTWLLFRFF 533 (653)
Q Consensus 491 P~~~~~~~~l~~~i~~~i~~~l~G~liiAli~Gilt~Igf~I~ 533 (653)
|...++.+++.+.+++.-..|++-|.+.-.+.+++..+.+.++
T Consensus 38 ~~G~~~M~eIa~~I~eGA~afL~rqyk~i~~~~vv~~~ll~~~ 80 (735)
T 4av3_A 38 PEGTERMKEISSYIRSGADSFLAHETKAIFKVAIVIAILLMIF 80 (735)
T ss_dssp CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5545667889999999999999999886666666655555444
No 6
>4av3_A K(+)-stimulated pyrophosphate-energized sodium PU; hydrolase, membrane pyrophosphotase, ION pump; 2.60A {Thermotoga maritima} PDB: 4av6_A
Probab=14.11 E-value=1.3e+03 Score=26.91 Aligned_cols=35 Identities=6% Similarity=-0.001 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006268 498 IRCVEVIDNAISGVLLATVEIAFFQGCLTWLLFRF 532 (653)
Q Consensus 498 ~~l~~~i~~~i~~~l~G~liiAli~Gilt~Igf~I 532 (653)
.+-+|.+.++.+.+-+|-.+=+...+.++.++-++
T Consensus 493 TD~LDavGNTTkAi~KGfAIGSAaL~AlaLfaay~ 527 (735)
T 4av3_A 493 TDHLDAVGNTTAAIGKGFAIGSAIFAALSLFASYM 527 (735)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccccccccccccchhHhHHHHHHHHHHHHHH
Confidence 34456777777777777776666666666555554
No 7
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=12.77 E-value=81 Score=22.55 Aligned_cols=22 Identities=9% Similarity=0.365 Sum_probs=15.7
Q ss_pred chhhhHHHHHHHHHHHHHHHHH
Q 006268 622 EGAIMGPLITTVVIALKDLYVE 643 (653)
Q Consensus 622 ~G~ILGPlIlal~~vl~~ly~e 643 (653)
.-.|+||+++.+++.+++.|-+
T Consensus 5 ~~~IIaPivVGvvl~L~d~WLn 26 (33)
T 2kv5_A 5 MSLVIAPIFVGLVLEMISRVLD 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 3468899999977777666543
No 8
>3ee4_A Probable ribonucleoside-diphosphate reductase; manganese, iron, DIIRON, carboxylate, oxidase, ligand, C monooxygenase; HET: MYR; 1.90A {Mycobacterium tuberculosis} PDB: 4ac8_A*
Probab=12.05 E-value=4.1e+02 Score=27.41 Aligned_cols=38 Identities=5% Similarity=0.049 Sum_probs=28.5
Q ss_pred HHHHHHHhhhhhhhHHHhhcccccccccccchhhhhhcccC
Q 006268 272 IIFFSYKIGVEGKDAVISIKSHVEESNYAERLGVKKWMEEN 312 (653)
Q Consensus 272 ~vF~~~qi~~E~~~avi~l~~~v~n~t~~~~p~l~~wL~e~ 312 (653)
-.|++.|+..|++|+ +.=++++ +|+..++++-+|..++
T Consensus 100 ~~~l~~q~~~EaiHs--~sYs~il-~tl~~~~~~f~~~~~~ 137 (323)
T 3ee4_A 100 EMYLTQFAFEEAKHT--QVFRMWL-DAVGISEDLHRYLDDL 137 (323)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHH-HHHTCCSCCGGGGTTC
T ss_pred HHHHHHHHHHHHHHH--HHHHHHH-HHhCCCHHHHHHHHcC
Confidence 369999999999995 4445555 7777777787887665
No 9
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=11.75 E-value=3.1e+02 Score=21.90 Aligned_cols=29 Identities=10% Similarity=0.086 Sum_probs=21.1
Q ss_pred HhHHHHHHHHHHhhccCCCCCCCCchhHHHHHHH
Q 006268 154 VDIKEVFFKVFLKKLKNNGPRHSRSGFSKLVRWL 187 (653)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 187 (653)
.+--+.+-|++-+..|| ++.-|.++++..
T Consensus 9 ~~f~kd~~rvlk~~~KP-----d~~Ef~~iak~~ 37 (61)
T 3mp7_B 9 RHFWKESRRAFLVTKKP-----NWATYKRAAKIT 37 (61)
T ss_dssp TTHHHHHTHHHHHSCCC-----CTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCC-----CHHHHHHHHHHH
Confidence 33344455678888889 888899998864
No 10
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=9.92 E-value=3.7e+02 Score=25.85 Aligned_cols=52 Identities=8% Similarity=0.277 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcChhhHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 006268 456 EVFNFVSQLMIFLWVLYYLITSESGGVTEQVMGMLPISKPARIRCVEVIDNAIS 509 (653)
Q Consensus 456 ~v~~fli~~vI~l~vlFyLL~sDg~~l~~~l~~llP~~~~~~~~l~~~i~~~i~ 509 (653)
.+++.+++|+++-+++||++..--.++++. +--|........++.++++.++
T Consensus 94 ~Fi~avInFlIIA~vIYFliVk~iNklk~~--~e~~~~~~~e~~LL~EIRDlLk 145 (174)
T 2oar_A 94 VLLSAAINFFLIAFAVYFLVVLPYNTLRKK--GEVEQPGDTQVVLLTEIRDLLA 145 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHT--TCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCCCCChHHHHHHHHHHHH
Confidence 466677777788888877765112222221 1001111223457777776654
Done!