Query 006268
Match_columns 653
No_of_seqs 311 out of 1700
Neff 5.1
Searched_HMMs 13730
Date Mon Mar 25 20:28:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006268.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/006268hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 44.9 11 0.0008 23.7 3.4 22 260-281 1-22 (27)
2 d2e74e1 f.23.24.1 (E:1-32) Pet 7.9 1.3E+02 0.0096 19.1 2.6 19 261-279 2-20 (32)
3 d2o4aa1 a.35.1.7 (A:370-452) D 5.9 1.2E+02 0.009 23.8 2.1 48 130-187 15-64 (83)
4 d3by8a1 d.110.6.1 (A:46-178) F 5.7 1.1E+02 0.0077 25.3 1.7 29 296-324 15-43 (133)
5 d2oara1 f.16.1.1 (A:10-118) Ga 4.3 6.3E+02 0.046 20.0 5.8 20 457-476 63-82 (109)
6 d1s7ea2 a.35.1.7 (A:6-85) Hepa 3.8 2.2E+02 0.016 22.0 2.2 49 129-187 15-64 (80)
7 d1zata2 d.335.1.1 (A:217-338) 3.7 1.4E+02 0.01 24.6 1.0 48 289-342 14-62 (122)
8 d1oedc_ f.36.1.1 (C:) Acetylch 3.2 8.7E+02 0.064 20.5 6.3 17 516-532 9-25 (260)
9 d2axtj1 f.23.32.1 (J:7-40) Pho 3.1 2.5E+02 0.018 18.4 1.5 18 607-626 6-23 (34)
10 d1q9ja2 c.43.1.2 (A:181-418) P 2.9 4.4E+02 0.032 22.2 3.6 61 40-101 11-72 (238)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=44.94 E-value=11 Score=23.72 Aligned_cols=22 Identities=23% Similarity=0.582 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 006268 260 LIVGMMVVFLAGIIFFSYKIGV 281 (653)
Q Consensus 260 lIl~liv~~~~~~vF~~~qi~~ 281 (653)
+.+|+|+.++.+..|.+||-|-
T Consensus 1 ivlgli~~tl~glf~aayqqyk 22 (27)
T d2e74g1 1 LVLGLVFATLGGLFYAAYQQYK 22 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeeeehHHHHHHHHHHHHHHhc
Confidence 4689999999999999999774
No 2
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=7.85 E-value=1.3e+02 Score=19.07 Aligned_cols=19 Identities=21% Similarity=0.469 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 006268 261 IVGMMVVFLAGIIFFSYKI 279 (653)
Q Consensus 261 Il~liv~~~~~~vF~~~qi 279 (653)
|+|-++-.+|..+|++..+
T Consensus 2 ilgavfyivfialffgiav 20 (32)
T d2e74e1 2 ILGAVFYIVFIALFFGIAV 20 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eeeeeHHHHHHHHHHHHHh
Confidence 3444444555555555544
No 3
>d2o4aa1 a.35.1.7 (A:370-452) DNA-binding protein SATB1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.94 E-value=1.2e+02 Score=23.75 Aligned_cols=48 Identities=19% Similarity=0.308 Sum_probs=30.0
Q ss_pred ccchhhHHHhhhhHHHHHhhhhhHHhHHHHHHHHHHhhccCCCCCC--CCchhHHHHHHH
Q 006268 130 LQLGLTETVLAVPVAIFKVFVGTLVDIKEVFFKVFLKKLKNNGPRH--SRSGFSKLVRWL 187 (653)
Q Consensus 130 ~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l 187 (653)
.|.++..+++|- -++.-+-||+-| +||+|+|-..-. +++-|-++-.||
T Consensus 15 ~~~~IsQ~~Fak--~vL~rSQgtlSd--------LL~~pkpw~~ls~sgre~f~Rm~~wL 64 (83)
T d2o4aa1 15 KRAGISQAVFAR--VAFNRTQGLLSE--------ILRKEEDPKTASQSLLVNLRAMQNFL 64 (83)
T ss_dssp HHHTCCHHHHHH--HHHSCCHHHHHH--------HHHHCCCTTSCCHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHH--HHHccCcHHHHH--------HHcCCCCchhhhHHHHHHHHHHHHHH
Confidence 355666666664 223445566665 889988854442 566677777775
No 4
>d3by8a1 d.110.6.1 (A:46-178) Fumarate sensor DcuS {Escherichia coli [TaxId: 562]}
Probab=5.72 E-value=1.1e+02 Score=25.27 Aligned_cols=29 Identities=3% Similarity=0.116 Sum_probs=21.8
Q ss_pred ccccccchhhhhhcccCCccchhhhHHHH
Q 006268 296 ESNYAERLGVKKWMEENDVPGMVDRYTTT 324 (653)
Q Consensus 296 n~t~~~~p~l~~wL~e~d~~~~vds~~~~ 324 (653)
.++++++|++++.|..++-+..++.++++
T Consensus 15 a~~lA~~P~v~~al~~~~~~~~lq~~~e~ 43 (133)
T d3by8a1 15 ARTLADSPEIRQGLQKKPQESGIQAIAEA 43 (133)
T ss_dssp HHHHHTCHHHHHHTTSCGGGCSHHHHHHH
T ss_pred HHHHHCCHHHHHHHhCCCchHHHHHHHHH
Confidence 37899999999999887654556555544
No 5
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=4.34 E-value=6.3e+02 Score=20.05 Aligned_cols=20 Identities=10% Similarity=0.552 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006268 457 VFNFVSQLMIFLWVLYYLIT 476 (653)
Q Consensus 457 v~~fli~~vI~l~vlFyLL~ 476 (653)
+.+.+++|+++-++.||+..
T Consensus 63 fi~a~InFlIiA~vv~F~vv 82 (109)
T d2oara1 63 LLSAAINFFLIAFAVYFLVV 82 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55556666677676777664
No 6
>d1s7ea2 a.35.1.7 (A:6-85) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.79 E-value=2.2e+02 Score=22.01 Aligned_cols=49 Identities=22% Similarity=0.408 Sum_probs=32.2
Q ss_pred cccchhhHHHhhhhHHHHHhhhhhHHhHHHHHHHHHHhhccCCCCCC-CCchhHHHHHHH
Q 006268 129 PLQLGLTETVLAVPVAIFKVFVGTLVDIKEVFFKVFLKKLKNNGPRH-SRSGFSKLVRWL 187 (653)
Q Consensus 129 ~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l 187 (653)
-.|.++..+++|- -|+.-+-||+-| +||||||-..-+ +++-|-|+-.||
T Consensus 15 L~~~~IsQ~~Fa~--~vL~rsQGtlSd--------LL~kPKPW~~l~~gre~y~RM~~wL 64 (80)
T d1s7ea2 15 LKRYSIPQAIFAQ--RVLCRSQGTLSD--------LLRNPKPWSKLKSGRETFRRMWKWL 64 (80)
T ss_dssp HTSSCCCHHHHHH--HTSSSCSSHHHH--------HTTSCCTTCCCSSCHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHH--HHHccChHHHHH--------HHcCCCChhhhcchhHHHHHHHHHH
Confidence 3467777777774 234445666666 889999854433 667777777776
No 7
>d1zata2 d.335.1.1 (A:217-338) L,D-transpeptidase, pre-catalytic domain {Enterococcus faecium [TaxId: 1352]}
Probab=3.70 E-value=1.4e+02 Score=24.58 Aligned_cols=48 Identities=21% Similarity=0.356 Sum_probs=30.4
Q ss_pred hhcccccccccc-cchhhhhhcccCCccchhhhHHHHHHHHHHHHHHhhhhcccc
Q 006268 289 SIKSHVEESNYA-ERLGVKKWMEENDVPGMVDRYTTTFYETVSEQVDSLAMQYNM 342 (653)
Q Consensus 289 ~l~~~v~n~t~~-~~p~l~~wL~e~d~~~~vds~~~~~y~~v~e~i~~~~~qyn~ 342 (653)
.++.++-+++++ +.-.+++|+.-+|-.-.+|. +.+++.+++|+.+||-
T Consensus 14 ~ITY~~~~~~~~ld~~~I~~Wl~~dd~~v~~d~------~~v~~yV~~La~ky~T 62 (122)
T d1zata2 14 KATYSINGETFQIPSSDIMSWLTYNDGKVDLDT------EQVRQYVTDLGTKYNT 62 (122)
T ss_dssp CEEEEETTEEEECCHHHHHHHEEEETTEEEECH------HHHHHHHHHHHHHHCT
T ss_pred EEEEEECCEEEEECHHHhhhhEEEcCCcEEECH------HHHHHHHHHHHHhcCC
Confidence 556666555433 33458899964322224553 5688888999999984
No 8
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=3.19 E-value=8.7e+02 Score=20.54 Aligned_cols=17 Identities=18% Similarity=0.237 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006268 516 VEIAFFQGCLTWLLFRF 532 (653)
Q Consensus 516 liiAli~Gilt~Igf~I 532 (653)
++=+++..++++++||+
T Consensus 9 ~~P~~~~~~l~~~~f~l 25 (260)
T d1oedc_ 9 ITPCVLISFLASLAFYL 25 (260)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHeee
Confidence 34477888899999998
No 9
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.09 E-value=2.5e+02 Score=18.35 Aligned_cols=18 Identities=17% Similarity=0.392 Sum_probs=11.6
Q ss_pred HHHHHHHHHhhccccchhhh
Q 006268 607 GLSIIGGMTLFPSALEGAIM 626 (653)
Q Consensus 607 lLAIlgG~~lFG~Gl~G~IL 626 (653)
+++.++|+.+.| +.|+|+
T Consensus 6 lv~tv~G~~vi~--~vG~Ff 23 (34)
T d2axtj1 6 IVATVAGMGVIV--IVGLFF 23 (34)
T ss_dssp HHHHHHHHHHHH--HHHHHH
T ss_pred EeeehhhhhhHh--heeeee
Confidence 456677777766 666654
No 10
>d1q9ja2 c.43.1.2 (A:181-418) Polyketide synthase associated protein 5, PapA5 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=2.89 E-value=4.4e+02 Score=22.23 Aligned_cols=61 Identities=10% Similarity=-0.050 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccccCCchhHHHHHHHHHhh-HHHHHHHHHHHHHHHHHhh
Q 006268 40 QAPLPESHAPPPSQANSTAPGQKTTCSGDPQVRLALYIALAHA-GLAFTLFILYFIFKLLQDY 101 (653)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ah~-g~a~~~~~ly~~~~l~~~~ 101 (653)
.+.||+..++.+..+.......-.+...+++.--+| .+.|+. |.-+.-+++-...+++..|
T Consensus 11 ~~~p~~~~~~~~~~~~~~~~~~~~~~~ls~~~t~~l-~~~~~~~~~T~~~~l~aa~~~~l~~~ 72 (238)
T d1q9ja2 11 YEIPATETPAVLAHPGLPQAVPVTRLWLSKQQTSDL-MAFGREHRLSLNAVVAAAILLTEWQL 72 (238)
T ss_dssp C-------------CCSBCCCCEEEECCCHHHHHHH-HHHHTTTTCCHHHHHHHHHHHHHHHH
T ss_pred ccCCCCcCCCCCCCCCCCCCCceEEEEeCHHHHHHH-HHHHHhcCCcHHHHHHHHHHHHHHHH
Done!