Query 006271
Match_columns 653
No_of_seqs 406 out of 1824
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 20:51:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006271.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006271hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1718 Dual specificity phosp 100.0 5.8E-31 1.3E-35 250.4 15.0 145 121-266 15-159 (198)
2 smart00195 DSPc Dual specifici 100.0 1.1E-29 2.4E-34 236.4 17.3 138 123-261 1-138 (138)
3 KOG1716 Dual specificity phosp 100.0 1.2E-28 2.6E-33 258.0 18.1 146 121-267 73-221 (285)
4 KOG1717 Dual specificity phosp 100.0 1.5E-28 3.2E-33 247.9 12.2 141 123-264 172-314 (343)
5 cd00127 DSPc Dual specificity 100.0 1.8E-27 4E-32 220.4 16.8 137 123-259 2-139 (139)
6 PF00782 DSPc: Dual specificit 99.9 1.4E-27 3.1E-32 220.4 14.4 131 130-261 1-133 (133)
7 PRK12361 hypothetical protein; 99.9 3.5E-23 7.6E-28 234.5 17.1 141 121-262 93-237 (547)
8 KOG0443 Actin regulatory prote 99.9 1.4E-22 3E-27 228.6 11.9 147 269-437 513-661 (827)
9 PTZ00242 protein tyrosine phos 99.8 2.8E-19 6.2E-24 173.8 14.9 143 121-265 9-161 (166)
10 KOG1719 Dual specificity phosp 99.8 1.3E-18 2.8E-23 164.3 11.9 140 125-264 27-172 (183)
11 PTZ00393 protein tyrosine phos 99.8 3.6E-18 7.7E-23 173.4 15.3 123 139-264 107-231 (241)
12 KOG0443 Actin regulatory prote 99.7 7E-18 1.5E-22 190.9 9.1 143 273-421 139-294 (827)
13 KOG1720 Protein tyrosine phosp 99.6 1.1E-14 2.3E-19 144.2 13.7 118 141-260 87-206 (225)
14 COG2453 CDC14 Predicted protei 99.6 2.8E-14 6E-19 140.4 12.1 96 164-262 69-165 (180)
15 smart00262 GEL Gelsolin homolo 99.5 3.9E-14 8.5E-19 123.3 9.5 76 292-367 13-89 (90)
16 KOG0444 Cytoskeletal regulator 99.4 4.2E-13 9.2E-18 149.3 5.8 148 268-420 617-775 (1255)
17 PF05706 CDKN3: Cyclin-depende 99.4 2E-12 4.3E-17 125.1 9.4 108 127-235 40-168 (168)
18 KOG0445 Actin regulatory prote 99.3 2.4E-12 5.2E-17 143.4 9.7 151 271-452 643-799 (919)
19 PF03162 Y_phosphatase2: Tyros 99.3 1.3E-11 2.8E-16 120.1 9.3 138 121-262 5-150 (164)
20 TIGR01244 conserved hypothetic 99.2 1.3E-10 2.8E-15 109.5 13.4 116 123-245 2-128 (135)
21 PF00626 Gelsolin: Gelsolin re 99.2 1.1E-11 2.5E-16 103.9 5.3 69 294-362 7-76 (76)
22 KOG0444 Cytoskeletal regulator 99.2 4.1E-12 9E-17 141.6 0.2 141 270-421 1038-1188(1255)
23 KOG2836 Protein tyrosine phosp 99.1 9.8E-10 2.1E-14 102.4 12.5 117 139-261 32-152 (173)
24 smart00012 PTPc_DSPc Protein t 98.9 9.4E-09 2E-13 89.7 10.5 87 169-255 4-99 (105)
25 smart00404 PTPc_motif Protein 98.9 9.4E-09 2E-13 89.7 10.5 87 169-255 4-99 (105)
26 PF04273 DUF442: Putative phos 98.9 9.4E-09 2E-13 93.9 8.8 93 123-221 2-105 (110)
27 PLN02727 NAD kinase 98.7 8.8E-08 1.9E-12 112.5 11.3 99 129-230 262-370 (986)
28 COG5350 Predicted protein tyro 98.7 1.1E-07 2.5E-12 90.5 9.5 112 141-253 25-146 (172)
29 cd00047 PTPc Protein tyrosine 98.5 4.1E-07 8.9E-12 92.1 9.7 82 175-256 138-226 (231)
30 smart00194 PTPc Protein tyrosi 98.4 9E-07 2E-11 91.2 9.6 70 187-256 178-253 (258)
31 PF13350 Y_phosphatase3: Tyros 98.4 1.4E-06 3E-11 84.3 9.1 110 126-236 16-158 (164)
32 KOG2283 Clathrin coat dissocia 98.2 4.4E-06 9.6E-11 92.8 10.4 142 120-265 12-177 (434)
33 COG3453 Uncharacterized protei 98.2 1.5E-05 3.3E-10 73.5 11.7 112 123-241 3-125 (130)
34 KOG0445 Actin regulatory prote 98.2 1.2E-06 2.7E-11 98.8 5.4 101 269-375 220-327 (919)
35 PRK15375 pathogenicity island 98.2 8.4E-06 1.8E-10 91.1 10.6 88 175-262 431-529 (535)
36 PF04179 Init_tRNA_PT: Initiat 98.2 1.4E-05 3E-10 89.3 12.1 135 124-258 290-449 (451)
37 KOG1572 Predicted protein tyro 98.2 1.3E-05 2.8E-10 81.7 10.7 118 121-241 58-187 (249)
38 PF00102 Y_phosphatase: Protei 97.9 2.7E-05 5.9E-10 77.8 7.8 69 188-256 153-230 (235)
39 PHA02742 protein tyrosine phos 97.7 0.00016 3.5E-09 77.1 10.3 51 201-251 229-284 (303)
40 PF14566 PTPlike_phytase: Inos 97.7 7.1E-05 1.5E-09 71.9 6.5 59 165-225 90-148 (149)
41 PHA02746 protein tyrosine phos 97.6 0.00018 3.9E-09 77.5 9.2 52 202-253 248-304 (323)
42 PHA02740 protein tyrosine phos 97.6 0.00034 7.3E-09 74.6 10.3 51 201-251 221-276 (298)
43 PHA02747 protein tyrosine phos 97.6 0.00028 6E-09 75.7 9.7 54 202-255 230-288 (312)
44 PHA02738 hypothetical protein; 97.4 0.0007 1.5E-08 72.8 9.9 54 201-254 227-285 (320)
45 COG2365 Protein tyrosine/serin 97.4 0.00023 5E-09 73.9 5.8 122 128-249 53-184 (249)
46 KOG2386 mRNA capping enzyme, g 97.4 0.00035 7.7E-09 76.5 7.0 123 140-262 53-185 (393)
47 KOG0792 Protein tyrosine phosp 97.2 0.0011 2.4E-08 79.1 9.2 80 175-254 1036-1121(1144)
48 KOG0790 Protein tyrosine phosp 96.5 0.0033 7.1E-08 69.2 5.6 81 169-252 416-510 (600)
49 COG5599 PTP2 Protein tyrosine 96.5 0.0078 1.7E-07 62.8 7.8 77 175-255 193-286 (302)
50 KOG0789 Protein tyrosine phosp 96.3 0.013 2.9E-07 64.2 8.4 56 200-255 298-359 (415)
51 KOG0791 Protein tyrosine phosp 95.2 0.07 1.5E-06 58.0 8.4 62 201-262 287-353 (374)
52 KOG1984 Vesicle coat complex C 94.5 0.12 2.5E-06 61.5 8.4 34 295-328 881-914 (1007)
53 KOG0793 Protein tyrosine phosp 94.4 0.16 3.4E-06 59.1 8.9 62 201-262 927-995 (1004)
54 PF14671 DSPn: Dual specificit 92.9 0.22 4.7E-06 47.9 5.9 102 125-242 3-111 (141)
55 KOG4471 Phosphatidylinositol 3 91.2 0.33 7.2E-06 55.7 5.7 40 186-225 359-399 (717)
56 KOG4228 Protein tyrosine phosp 89.4 0.45 9.8E-06 58.1 5.2 57 188-244 713-778 (1087)
57 PTZ00395 Sec24-related protein 89.4 1.6 3.5E-05 54.6 9.8 32 296-327 1435-1466(1560)
58 COG5028 Vesicle coat complex C 88.5 1.2 2.5E-05 52.8 7.4 31 297-327 738-768 (861)
59 KOG4228 Protein tyrosine phosp 81.5 2.3 5E-05 52.3 5.8 45 201-245 1018-1067(1087)
60 PF06602 Myotub-related: Myotu 77.5 4.6 0.0001 44.4 6.2 24 197-220 227-250 (353)
61 KOG1089 Myotubularin-related p 73.1 10 0.00022 44.1 7.6 35 192-226 334-370 (573)
62 KOG1985 Vesicle coat complex C 70.1 4.7 0.0001 48.3 4.1 31 296-326 764-794 (887)
63 cd01518 RHOD_YceA Member of th 69.8 13 0.00027 32.5 6.0 29 199-230 59-87 (101)
64 COG0607 PspE Rhodanese-related 62.8 16 0.00034 31.9 5.2 70 142-226 13-84 (110)
65 PLN00162 transport protein sec 62.6 16 0.00035 44.3 6.8 70 295-364 635-720 (761)
66 PRK01415 hypothetical protein; 54.9 29 0.00062 36.5 6.2 29 199-230 169-197 (247)
67 PLN02160 thiosulfate sulfurtra 52.7 19 0.00042 33.9 4.2 30 198-230 78-107 (136)
68 cd01533 4RHOD_Repeat_2 Member 51.3 28 0.0006 30.9 4.8 27 200-229 65-91 (109)
69 PF00581 Rhodanese: Rhodanese- 42.9 84 0.0018 27.1 6.5 82 146-230 10-98 (113)
70 cd01448 TST_Repeat_1 Thiosulfa 42.6 38 0.00083 30.4 4.4 30 199-230 77-106 (122)
71 PF03668 ATP_bind_2: P-loop AT 42.0 31 0.00068 37.0 4.2 18 203-220 244-261 (284)
72 PRK00142 putative rhodanese-re 41.9 40 0.00087 36.5 5.1 28 200-230 170-197 (314)
73 smart00400 ZnF_CHCC zinc finge 39.8 28 0.00061 27.6 2.7 32 205-238 23-54 (55)
74 PRK11784 tRNA 2-selenouridine 39.0 3.2E+02 0.0068 30.2 11.5 64 302-367 161-236 (345)
75 PF03861 ANTAR: ANTAR domain; 37.4 49 0.0011 26.5 3.7 26 216-241 15-40 (56)
76 cd01528 RHOD_2 Member of the R 37.3 67 0.0015 27.9 5.0 28 200-230 57-84 (101)
77 cd01523 RHOD_Lact_B Member of 36.3 41 0.00089 29.2 3.5 28 199-229 59-86 (100)
78 PRK05416 glmZ(sRNA)-inactivati 36.3 38 0.00082 36.3 3.8 36 185-220 222-264 (288)
79 TIGR03865 PQQ_CXXCW PQQ-depend 34.6 63 0.0014 31.5 4.7 30 199-230 114-143 (162)
80 PRK10886 DnaA initiator-associ 34.3 79 0.0017 32.0 5.5 38 183-223 23-60 (196)
81 cd01520 RHOD_YbbB Member of th 33.7 68 0.0015 29.5 4.6 30 198-229 83-112 (128)
82 PRK05320 rhodanese superfamily 32.5 74 0.0016 33.5 5.2 27 200-229 174-200 (257)
83 PRK05728 DNA polymerase III su 31.7 57 0.0012 31.2 3.9 25 186-210 14-38 (142)
84 cd01522 RHOD_1 Member of the R 30.0 72 0.0016 28.9 4.1 19 199-218 62-80 (117)
85 cd01532 4RHOD_Repeat_1 Member 30.0 72 0.0015 27.5 3.9 29 200-229 49-77 (92)
86 COG2927 HolC DNA polymerase II 29.8 52 0.0011 32.0 3.2 22 188-209 16-37 (144)
87 KOG0235 Phosphoglycerate mutas 29.6 1.8E+02 0.0038 30.2 7.2 52 179-236 130-185 (214)
88 PF01807 zf-CHC2: CHC2 zinc fi 29.4 54 0.0012 29.3 3.0 38 205-244 54-91 (97)
89 PRK14116 gpmA phosphoglyceromu 27.0 1.3E+02 0.0029 30.6 5.9 50 180-235 149-202 (228)
90 PF04364 DNA_pol3_chi: DNA pol 26.9 66 0.0014 30.5 3.4 24 187-210 15-38 (137)
91 PRK13938 phosphoheptose isomer 26.3 1.4E+02 0.003 30.2 5.8 42 181-225 25-66 (196)
92 cd01534 4RHOD_Repeat_3 Member 25.9 78 0.0017 27.2 3.4 27 200-229 55-81 (95)
93 PRK06646 DNA polymerase III su 25.6 83 0.0018 30.7 3.8 27 185-211 13-39 (154)
94 COG1660 Predicted P-loop-conta 24.4 1.1E+02 0.0024 32.8 4.7 17 203-219 245-261 (286)
95 PRK05772 translation initiatio 22.9 1.1E+02 0.0024 34.1 4.6 15 197-211 163-177 (363)
96 PRK14118 gpmA phosphoglyceromu 22.8 1.7E+02 0.0036 29.9 5.7 50 180-235 148-201 (227)
97 cd01519 RHOD_HSP67B2 Member of 22.5 1E+02 0.0022 26.7 3.5 27 200-229 65-91 (106)
98 cd01443 Cdc25_Acr2p Cdc25 enzy 21.9 2.1E+02 0.0046 25.4 5.5 19 200-218 65-83 (113)
99 PHA02540 61 DNA primase; Provi 21.7 1.2E+02 0.0026 33.4 4.5 39 202-243 52-91 (337)
100 cd04445 DEP_PLEK1 DEP (Disheve 21.2 80 0.0017 28.8 2.5 36 200-240 23-59 (99)
101 cd01525 RHOD_Kc Member of the 21.2 1.2E+02 0.0025 26.4 3.6 26 201-229 65-90 (105)
102 PRK06036 translation initiatio 20.8 1.3E+02 0.0028 33.2 4.6 19 198-216 145-163 (339)
103 COG0279 GmhA Phosphoheptose is 20.8 1.5E+02 0.0031 29.8 4.4 32 183-217 23-54 (176)
104 cd01529 4RHOD_Repeats Member o 20.8 1.1E+02 0.0023 26.4 3.2 28 199-229 54-81 (96)
105 cd01447 Polysulfide_ST Polysul 20.5 1.1E+02 0.0024 26.2 3.3 29 198-229 58-86 (103)
No 1
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.97 E-value=5.8e-31 Score=250.40 Aligned_cols=145 Identities=32% Similarity=0.510 Sum_probs=136.5
Q ss_pred cccccccCCeEECChhhhcCHHHHHhCCCcEEEEcccCCCcCccCCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHHHc
Q 006271 121 KECSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCPEYFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQ 200 (653)
Q Consensus 121 ~~~s~I~p~LYLGs~~~a~d~e~Lk~~GIt~VLNl~~e~~p~~~~~~i~yl~ipI~D~~~~dl~~~L~~av~fI~~~~~~ 200 (653)
..+++|++.|||++-..|.+..+|+++|||+|||.+.+. |+....++.|..+|+.|.+...+..+|+.+.+.|+.....
T Consensus 15 ~~~SqIt~sLfl~~GvaA~~k~~l~~~~It~IiNat~E~-pn~~l~~~qy~kv~~~D~p~~~l~~hfD~vAD~I~~v~~~ 93 (198)
T KOG1718|consen 15 GGMSQITPSLFLSNGVAANDKLLLKKRKITCIINATTEV-PNTSLPDIQYMKVPLEDTPQARLYDHFDPVADKIHSVIMR 93 (198)
T ss_pred cchhhcCcceeEeccccccCHHHHHhcCceEEEEcccCC-CCccCCCceeEEEEcccCCcchhhhhhhHHHHHHHHHHhc
Confidence 348899999999987788899999999999999987766 5566778999999999999999999999999999999999
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHHcCccccChhhHHHHHHHHHHhccCC
Q 006271 201 GGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKRVHAMP 266 (653)
Q Consensus 201 ggrVLVHC~aGiSRSatVViAYLM~~~g~SleeAl~~Vr~~RP~i~PN~gF~~QL~~~Ek~L~~~p 266 (653)
||++||||.+|+|||+++|+||||++.+|++.||+.+||.+||+|+||.||++||..||++|++..
T Consensus 94 gG~TLvHC~AGVSRSAsLClAYLmK~~~msLreAy~~vKa~RpiIRPN~GFw~QLi~YE~qL~g~~ 159 (198)
T KOG1718|consen 94 GGKTLVHCVAGVSRSASLCLAYLMKYHCMSLREAYHWVKARRPIIRPNVGFWRQLIDYEQQLFGNA 159 (198)
T ss_pred CCcEEEEEccccchhHHHHHHHHHHHccchHHHHHHHHHhhCceeCCCccHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999998753
No 2
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.97 E-value=1.1e-29 Score=236.41 Aligned_cols=138 Identities=38% Similarity=0.652 Sum_probs=128.8
Q ss_pred cccccCCeEECChhhhcCHHHHHhCCCcEEEEcccCCCcCccCCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHHHcCC
Q 006271 123 CSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCPEYFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQGG 202 (653)
Q Consensus 123 ~s~I~p~LYLGs~~~a~d~e~Lk~~GIt~VLNl~~e~~p~~~~~~i~yl~ipI~D~~~~dl~~~L~~av~fI~~~~~~gg 202 (653)
+++|.|+||+|+.+.+.+.+.|+++||++||||+.+. +.....++.|+++|+.|....++...|+++++||+.++++|+
T Consensus 1 ~~~I~~~l~~G~~~~~~~~~~l~~~gi~~Vi~l~~~~-~~~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~ 79 (138)
T smart00195 1 PSEILPHLYLGSYSSALNLALLKKLGITHVINVTNEV-PNLNKKGFTYLGVPILDNTETKISPYFPEAVEFIEDAEKKGG 79 (138)
T ss_pred CcEEeCCeEECChhHcCCHHHHHHcCCCEEEEccCCC-CCCCCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCC
Confidence 4689999999999999999999999999999997654 334567899999999998778888999999999999999999
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHHcCccccChhhHHHHHHHHHH
Q 006271 203 RVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKR 261 (653)
Q Consensus 203 rVLVHC~aGiSRSatVViAYLM~~~g~SleeAl~~Vr~~RP~i~PN~gF~~QL~~~Ek~ 261 (653)
+|||||.+|++||+++++||||+.+||++++|+++|+++||.+.||.+|+.||..||++
T Consensus 80 ~VlVHC~~G~~RS~~v~~~yl~~~~~~~~~~A~~~v~~~R~~~~p~~~~~~qL~~~e~~ 138 (138)
T smart00195 80 KVLVHCQAGVSRSATLIIAYLMKYRNLSLNDAYDFVKDRRPIISPNFGFLRQLIEYERK 138 (138)
T ss_pred eEEEECCCCCchHHHHHHHHHHHHhCCCHHHHHHHHHHHCCccCCCHhHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999974
No 3
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.96 E-value=1.2e-28 Score=258.04 Aligned_cols=146 Identities=42% Similarity=0.704 Sum_probs=135.4
Q ss_pred cccccccCCeEECChhhhcCHHHHHhCCCcEEEEcccCCCcC--ccC-CCcEEEEEEccCCCCCchHHHHHHHHHHHHHH
Q 006271 121 KECSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCPE--YFK-GDLVYKTLWLQDSPSEDITSILYDVFDYFEDV 197 (653)
Q Consensus 121 ~~~s~I~p~LYLGs~~~a~d~e~Lk~~GIt~VLNl~~e~~p~--~~~-~~i~yl~ipI~D~~~~dl~~~L~~av~fI~~~ 197 (653)
..+.+|.|+||+|+...+.+.+.|+++||++|||+.... +. +.. ..+.|+++++.|.+..+|..+|+++++||+.+
T Consensus 73 ~~~~~i~p~l~lg~~~~~~~~~~l~~~~it~vln~~~~~-~~~~~~~~~~~~y~~i~~~D~~~~~i~~~~~~~~~fI~~a 151 (285)
T KOG1716|consen 73 NPIVEILPNLYLGSQGVASDPDLLKKLGITHVLNVSSSC-PNPRFLKEQGIKYLRIPVEDNPSTDILQHFPEAISFIEKA 151 (285)
T ss_pred CCceeecCCceecCcccccchhhHHHcCCCEEEEecccC-CccccccccCceEEeccccCCccccHHHHHHHHHHHHHHH
Confidence 568899999999999999999999999999999986543 44 233 38999999999999999999999999999999
Q ss_pred HHcCCeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHHcCccccChhhHHHHHHHHHHhccCCC
Q 006271 198 REQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKRVHAMPA 267 (653)
Q Consensus 198 ~~~ggrVLVHC~aGiSRSatVViAYLM~~~g~SleeAl~~Vr~~RP~i~PN~gF~~QL~~~Ek~L~~~p~ 267 (653)
+.+|++|||||.+|+|||+|+||||||++++|++++|+++|+.+||.+.||.+|+.||++||+.+.....
T Consensus 152 ~~~~~~vlVHC~~GvSRSat~viAYlM~~~~~~l~~A~~~vk~~R~~i~PN~gf~~QL~~~e~~l~~~~~ 221 (285)
T KOG1716|consen 152 REKGGKVLVHCQAGVSRSATLVIAYLMKYEGLSLEDAYELVKSRRPIISPNFGFLRQLLEFEKRLSKKSP 221 (285)
T ss_pred HhCCCeEEEEcCCccchhHHHHHHHHHHHcCCCHHHHHHHHHHhCCccCCCHHHHHHHHHHHHhhccCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999876543
No 4
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.95 E-value=1.5e-28 Score=247.88 Aligned_cols=141 Identities=28% Similarity=0.561 Sum_probs=132.5
Q ss_pred cccccCCeEECChhhhcCHHHHHhCCCcEEEEcccCCCcCccCC--CcEEEEEEccCCCCCchHHHHHHHHHHHHHHHHc
Q 006271 123 CSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCPEYFKG--DLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQ 200 (653)
Q Consensus 123 ~s~I~p~LYLGs~~~a~d~e~Lk~~GIt~VLNl~~e~~p~~~~~--~i~yl~ipI~D~~~~dl~~~L~~av~fI~~~~~~ 200 (653)
+.+|+|+||||+..++.+.+.|+++||++|||++... |+.++. ++.|++||+.|+...++.++|++|+.||++++.+
T Consensus 172 PV~ilp~LYLg~a~ds~NldvLkk~gI~yviNVTpnl-pn~fe~~g~f~YkqipisDh~Sqnls~ffpEAIsfIdeArsk 250 (343)
T KOG1717|consen 172 PVEILPNLYLGCAKDSTNLDVLKKYGIKYVINVTPNL-PNNFENNGEFIYKQIPISDHASQNLSQFFPEAISFIDEARSK 250 (343)
T ss_pred chhhccchhcccccccccHHHHHhcCceEEEecCCCC-cchhhcCCceeEEeeeccchhhhhhhhhhHHHHHHHHHhhcc
Confidence 5689999999999999999999999999999997654 555543 6899999999999999999999999999999999
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHHcCccccChhhHHHHHHHHHHhcc
Q 006271 201 GGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKRVHA 264 (653)
Q Consensus 201 ggrVLVHC~aGiSRSatVViAYLM~~~g~SleeAl~~Vr~~RP~i~PN~gF~~QL~~~Ek~L~~ 264 (653)
+..|||||-+|+|||+||++||||.+..+++.+||++|+.++..|.||.+||.||..||+.+-.
T Consensus 251 ~cgvLVHClaGISRSvTvtvaYLMqkl~lslndAyd~Vk~kksnisPNFnFMgQLldfertlgl 314 (343)
T KOG1717|consen 251 NCGVLVHCLAGISRSVTVTVAYLMQKLNLSLNDAYDFVKHKKSNISPNFNFMGQLLDFERTLGL 314 (343)
T ss_pred CCcEEEeeeccccchhHHHHHHHHHHhccchhhHHHHHHHhccCCCCCcchhHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999999998743
No 5
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.95 E-value=1.8e-27 Score=220.37 Aligned_cols=137 Identities=42% Similarity=0.682 Sum_probs=127.6
Q ss_pred cccccCCeEECChhhhcCHHHHHhCCCcEEEEcccCCCc-CccCCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHHHcC
Q 006271 123 CSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCP-EYFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQG 201 (653)
Q Consensus 123 ~s~I~p~LYLGs~~~a~d~e~Lk~~GIt~VLNl~~e~~p-~~~~~~i~yl~ipI~D~~~~dl~~~L~~av~fI~~~~~~g 201 (653)
+++|.|+||+|+.+.+.+.+.|+++||++||||+..... .....++.|+++|+.|....++...++.+++||+..++++
T Consensus 2 ~~~i~~~l~~g~~~~~~d~~~L~~~gi~~VI~l~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~ 81 (139)
T cd00127 2 LSEITPGLYLGSYPAASDKELLKKLGITHVLNVAKEVPNENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDDAREKG 81 (139)
T ss_pred cCEEcCCeEECChhHhcCHHHHHHcCCCEEEEcccCCCCcccCCCCceEEEEEceeCCCCChHHHHHHHHHHHHHHHhcC
Confidence 689999999999999999999999999999999865432 3345789999999999988888889999999999999999
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHHcCccccChhhHHHHHHHH
Q 006271 202 GRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQ 259 (653)
Q Consensus 202 grVLVHC~aGiSRSatVViAYLM~~~g~SleeAl~~Vr~~RP~i~PN~gF~~QL~~~E 259 (653)
++|||||.+|+|||+++++||||+..+|++++|+++||++||.+.||.+|+.||.+||
T Consensus 82 ~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~a~~~vr~~r~~~~~~~~~~~~l~~~~ 139 (139)
T cd00127 82 GKVLVHCLAGVSRSATLVIAYLMKTLGLSLREAYEFVKSRRPIISPNAGFMRQLKEYE 139 (139)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHHHCCccCCCHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999986
No 6
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.95 E-value=1.4e-27 Score=220.40 Aligned_cols=131 Identities=37% Similarity=0.584 Sum_probs=121.8
Q ss_pred eEECChhhhcCHHHHHhCCCcEEEEcccCCCcC--ccCCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHHHcCCeEEEE
Q 006271 130 IYLGSDAVAKNRGILRQNGITHVLNCVGFVCPE--YFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVH 207 (653)
Q Consensus 130 LYLGs~~~a~d~e~Lk~~GIt~VLNl~~e~~p~--~~~~~i~yl~ipI~D~~~~dl~~~L~~av~fI~~~~~~ggrVLVH 207 (653)
||||+...+. .+.|+++||++||||+.+.... ....++.|+++|+.|....++...|+.+++||+++..+|++||||
T Consensus 1 lylG~~~~a~-~~~l~~~~I~~Vin~~~~~~~~~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVH 79 (133)
T PF00782_consen 1 LYLGSYPAAS-IAFLKNLGITHVINLQEECPNPYFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVH 79 (133)
T ss_dssp EEEEEHHHHC-HHHHHHTTEEEEEECSSSSSTSHHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEE
T ss_pred CEEeCHHHHh-HHHHHHCCCCEEEEccCCCcCchhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEE
Confidence 7999999999 9999999999999997654321 345689999999999888888899999999999999999999999
Q ss_pred cCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHHcCccccChhhHHHHHHHHHH
Q 006271 208 CCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKR 261 (653)
Q Consensus 208 C~aGiSRSatVViAYLM~~~g~SleeAl~~Vr~~RP~i~PN~gF~~QL~~~Ek~ 261 (653)
|.+|+|||+++++||||+.++|++++|+++|+.+||.+.||.+|++||.+||++
T Consensus 80 C~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~rp~~~~~~~~~~~L~~~e~~ 133 (133)
T PF00782_consen 80 CKAGLSRSGAVAAAYLMKKNGMSLEEAIEYVRSRRPQINPNPSFIRQLYEYEKK 133 (133)
T ss_dssp ESSSSSHHHHHHHHHHHHHHTSSHHHHHHHHHHHSTTSTHHHHHHHHHHHHHHH
T ss_pred eCCCcccchHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999999999999999975
No 7
>PRK12361 hypothetical protein; Provisional
Probab=99.90 E-value=3.5e-23 Score=234.47 Aligned_cols=141 Identities=21% Similarity=0.299 Sum_probs=126.2
Q ss_pred cccccccCCeEECChhhhcCHHHHHhCCCcEEEEcccCCCc---CccCCCcEEEEEEccCCCCCchHHHHHHHHHHHHHH
Q 006271 121 KECSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCP---EYFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDV 197 (653)
Q Consensus 121 ~~~s~I~p~LYLGs~~~a~d~e~Lk~~GIt~VLNl~~e~~p---~~~~~~i~yl~ipI~D~~~~dl~~~L~~av~fI~~~ 197 (653)
+.+++|.|+||||+...+.|.+.|+++||++||||+.+... .....+++|+++|+.|...+.+ .+|+++++||+++
T Consensus 93 ~~~~~I~~~l~lG~~~~a~d~~~L~~~gI~~Vldlt~E~~~~~~~~~~~~i~yl~iPi~D~~~p~~-~~l~~a~~~i~~~ 171 (547)
T PRK12361 93 PAIQKIDENLYLGCRLFPADLEKLKSNKITAILDVTAEFDGLDWSLTEEDIDYLNIPILDHSVPTL-AQLNQAINWIHRQ 171 (547)
T ss_pred CcceEEcCcEEECCCCCcccHHHHHHcCCCEEEEcccccccccccccccCceEEEeecCCCCCCcH-HHHHHHHHHHHHH
Confidence 34689999999999999999999999999999999865422 2334678999999999876654 7899999999999
Q ss_pred HHcCCeEEEEcCCCCchHHHHHHHHHHhh-cCCCHHHHHHHHHHHcCccccChhhHHHHHHHHHHh
Q 006271 198 REQGGRVFVHCCQGVSRSTSLVIAYLMWR-EGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKRV 262 (653)
Q Consensus 198 ~~~ggrVLVHC~aGiSRSatVViAYLM~~-~g~SleeAl~~Vr~~RP~i~PN~gF~~QL~~~Ek~L 262 (653)
+++|++|||||.+|+|||+++++||||.+ .++++++|+++||++||.+.||.+++++|.+|.++.
T Consensus 172 ~~~~~~VlVHC~~G~sRSa~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~v~~n~~q~~~l~~~~~~~ 237 (547)
T PRK12361 172 VRANKSVVVHCALGRGRSVLVLAAYLLCKDPDLTVEEVLQQIKQIRKTARLNKRQLRALEKMLEQG 237 (547)
T ss_pred HHCCCeEEEECCCCCCcHHHHHHHHHHHhccCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcC
Confidence 99999999999999999999999999976 589999999999999999999999999999988764
No 8
>KOG0443 consensus Actin regulatory proteins (gelsolin/villin family) [Cytoskeleton]
Probab=99.88 E-value=1.4e-22 Score=228.60 Aligned_cols=147 Identities=23% Similarity=0.340 Sum_probs=126.7
Q ss_pred CCccceeeeecCCCCCCCccccccccCCCcccccCCCCeEEEecCCeEEEEeCCCCChHHHHHHHHHHHHHHHHhhcCCc
Q 006271 269 PNSMLRIYRIAPHSSYDPLHLVPKLLNYPVAQGFDTRGAFIVLVPSAIYVWIGKNCSVMMSNRAREAANQVIRYEKAQGQ 348 (653)
Q Consensus 269 p~~~~RLYRV~g~s~~dp~~lVpk~ev~~~~sSLnS~d~FILd~~~~IYVW~Gk~s~~~er~~A~~~A~~I~~~e~~~~~ 348 (653)
+..-.|||||+|..+.+.+++ ||++.+++|||.|||||+++..+|+|+|++|+..+++.|+.++..|. ..+
T Consensus 513 ~~~~t~LFqV~Gt~~~n~kAv----eV~~~A~SLNSsd~fvL~t~s~~ylW~G~gss~~e~e~A~~v~~~l~-----~~~ 583 (827)
T KOG0443|consen 513 PAPSTRLFQVQGTGPSNTKAV----EVPAVASSLNSSDCFVLKTGSSVYLWCGKGSSGDEREMAKRVLDLLK-----RCQ 583 (827)
T ss_pred CCCceEEEEEeccCcccceeE----eeccccccccccceEEEecCCeEEEEeCCCCCHHHHHHHHHHHHHHh-----cCC
Confidence 445579999999998888887 99999999999999999999999999999999988888777776664 245
Q ss_pred EEEcCCCCChHHHHHHhcCCCCCCCCC-CcccccCCceeEEeecCCccEE-EeccCCCCCCCCCchhhhhhccCCCcCce
Q 006271 349 ITSIKEGEEPLEFWDALVRGQFFADGC-NKEEVKNEQVSFSGSNKIATLM-QDGAGEIDEYDLDFELFHKALDGGVVPPF 426 (653)
Q Consensus 349 I~vI~EG~Ep~~FW~aLGgk~~~~~~~-~~~~~~~~pRLf~~Sd~sG~f~-ee~~~~f~Q~DLd~e~v~~~~~gg~vp~~ 426 (653)
.+.+.||+||++||++|||+.+|+... ........||||.|++.+|.|+ +|+. +|.|+||++|+||.+
T Consensus 584 ~~~v~EG~Ep~~FWe~LGGk~~Y~~sk~~~~~~~~~PrLF~Cs~~~g~f~~~EI~-~F~QdDL~tdDi~lL--------- 653 (827)
T KOG0443|consen 584 STAVKEGSEPDEFWELLGGKAEYPSSKRLEEKPERDPRLFSCSNKTGSFVVEEIY-NFTQDDLMTDDIMLL--------- 653 (827)
T ss_pred hhhhhcCCCchhhHHHcCCCCCCCcCccccccCCCCCcEEEEEecCCcEEEEEec-CcchhhccccceEEE---------
Confidence 678999999999999999999998754 4444578899999999999999 8886 999999999998654
Q ss_pred eeccCCcceee
Q 006271 427 SVSNAGSETCV 437 (653)
Q Consensus 427 ~~~~~~~e~~l 437 (653)
|++.|||+
T Consensus 654 ---Dt~~evfv 661 (827)
T KOG0443|consen 654 ---DTWSEVFV 661 (827)
T ss_pred ---ecCceEEE
Confidence 55677776
No 9
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.81 E-value=2.8e-19 Score=173.76 Aligned_cols=143 Identities=17% Similarity=0.165 Sum_probs=115.3
Q ss_pred cccccccCCeEECChhhh----cCHHHHHhCCCcEEEEcccCCCc-C-ccCCCcEEEEEEccCCCCCchHHHHHHHHHHH
Q 006271 121 KECSRIADHIYLGSDAVA----KNRGILRQNGITHVLNCVGFVCP-E-YFKGDLVYKTLWLQDSPSEDITSILYDVFDYF 194 (653)
Q Consensus 121 ~~~s~I~p~LYLGs~~~a----~d~e~Lk~~GIt~VLNl~~e~~p-~-~~~~~i~yl~ipI~D~~~~dl~~~L~~av~fI 194 (653)
..++-|+.++.+=..+.. .+.+.|+++||++||+++....+ . ....++.|+++|+.|...+.. ..+.+.++++
T Consensus 9 ~~~~~~~~r~~~~~~P~~~~~~~~l~~L~~~gI~~Iv~l~~~~~~~~~~~~~gi~~~~~p~~D~~~P~~-~~i~~~~~~i 87 (166)
T PTZ00242 9 RQIEYVLFKFLILDAPSPSNLPLYIKELQRYNVTHLVRVCGPTYDAELLEKNGIEVHDWPFDDGAPPPK-AVIDNWLRLL 87 (166)
T ss_pred cceeeeceEEEEecCCCcccHHHHHHHHHhCCCeEEEecCCCCCCHHHHHHCCCEEEecCCCCCCCCCH-HHHHHHHHHH
Confidence 456677777777665554 45589999999999998653222 1 123589999999988765443 5567778888
Q ss_pred HHHHHc----CCeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHHcCccccChhhHHHHHHHHHHhccC
Q 006271 195 EDVREQ----GGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKRVHAM 265 (653)
Q Consensus 195 ~~~~~~----ggrVLVHC~aGiSRSatVViAYLM~~~g~SleeAl~~Vr~~RP~i~PN~gF~~QL~~~Ek~L~~~ 265 (653)
++.+.. |++|+|||.+|+|||++++++|||...++++++|+++||++||.+ ++..++.+|.+|++.+++.
T Consensus 88 ~~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~~~~~~s~~eAi~~vr~~R~~~-i~~~Q~~~l~~~~~~~~~~ 161 (166)
T PTZ00242 88 DQEFAKQSTPPETIAVHCVAGLGRAPILVALALVEYGGMEPLDAVGFVREKRKGA-INQTQLQFLKKYKPRKKAA 161 (166)
T ss_pred HHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCCC-chHHHHHHHHHHHHHhccC
Confidence 877654 999999999999999999999999998999999999999999986 5889999999999877553
No 10
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.78 E-value=1.3e-18 Score=164.32 Aligned_cols=140 Identities=18% Similarity=0.213 Sum_probs=121.8
Q ss_pred cccCCeEECChhh-hcCHHHHHhCCCcEEEEcccCCCc----C-ccCCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHH
Q 006271 125 RIADHIYLGSDAV-AKNRGILRQNGITHVLNCVGFVCP----E-YFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVR 198 (653)
Q Consensus 125 ~I~p~LYLGs~~~-a~d~e~Lk~~GIt~VLNl~~e~~p----~-~~~~~i~yl~ipI~D~~~~dl~~~L~~av~fI~~~~ 198 (653)
+|.+++.+|-.+. .++.+.+++.|+..|+.|.....- + +-.-+++++.||..|.-..+-...+.++++||++..
T Consensus 27 ~~~~~v~~~~~~FrS~~~~~i~ke~v~gvv~~ne~yE~~a~s~~wk~~giE~L~i~T~D~~~~Ps~~~i~~aVeFi~k~a 106 (183)
T KOG1719|consen 27 RIDEFVILGAMPFRSMDVPLIKKENVGGVVTLNEPYELLAPSNLWKNYGIEFLVIPTRDYTGAPSLENIQKAVEFIHKNA 106 (183)
T ss_pred eecceEEEeecccccccchHHHhcCCCeEEEeCCchhhhhhhHHHHhccceeEEeccccccCCCCHHHHHHHHHHHHhcc
Confidence 7888888887663 367889999999999998643211 1 123489999999999877666688999999999999
Q ss_pred HcCCeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHHcCccccChhhHHHHHHHHHHhcc
Q 006271 199 EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKRVHA 264 (653)
Q Consensus 199 ~~ggrVLVHC~aGiSRSatVViAYLM~~~g~SleeAl~~Vr~~RP~i~PN~gF~~QL~~~Ek~L~~ 264 (653)
..|+.|||||++|++||+|+|+||||...+|+.++|+++||.+||.|-..+++++-|.+|.+.+-.
T Consensus 107 sLGktvYVHCKAGRtRSaTvV~cYLmq~~~wtpe~A~~~vr~iRp~VlL~~~Qw~~l~ef~~~~~~ 172 (183)
T KOG1719|consen 107 SLGKTVYVHCKAGRTRSATVVACYLMQHKNWTPEAAVEHVRKIRPRVLLRPAQWDVLKEFYKQIVA 172 (183)
T ss_pred ccCCeEEEEecCCCccchhhhhhhhhhhcCCCHHHHHHHHHhcCcceeecHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999887643
No 11
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.77 E-value=3.6e-18 Score=173.43 Aligned_cols=123 Identities=16% Similarity=0.191 Sum_probs=106.9
Q ss_pred cCHHHHHhCCCcEEEEcccCCCcC--ccCCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCCCCchHH
Q 006271 139 KNRGILRQNGITHVLNCVGFVCPE--YFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRST 216 (653)
Q Consensus 139 ~d~e~Lk~~GIt~VLNl~~e~~p~--~~~~~i~yl~ipI~D~~~~dl~~~L~~av~fI~~~~~~ggrVLVHC~aGiSRSa 216 (653)
..++.|++.||++||++++...+. ....++.++++|+.|...+.. ..+++.+++|++.++.|++|+|||.+|+|||+
T Consensus 107 ~yl~eLk~~gV~~lVrlcE~~Yd~~~~~~~GI~~~~lpipDg~aPs~-~~i~~~l~~i~~~l~~g~~VaVHC~AGlGRTG 185 (241)
T PTZ00393 107 LYIKEMKNYNVTDLVRTCERTYNDGEITSAGINVHELIFPDGDAPTV-DIVSNWLTIVNNVIKNNRAVAVHCVAGLGRAP 185 (241)
T ss_pred HHHHHHHHcCCCEEEECCCCCCCHHHHHHcCCeEEEeecCCCCCCCH-HHHHHHHHHHHHHHhcCCeEEEECCCCCCHHH
Confidence 566899999999999987644321 234589999999999876664 67788999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHcCccccChhhHHHHHHHHHHhcc
Q 006271 217 SLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKRVHA 264 (653)
Q Consensus 217 tVViAYLM~~~g~SleeAl~~Vr~~RP~i~PN~gF~~QL~~~Ek~L~~ 264 (653)
++++||||. .|+++++|+++||.+||.+ +|..++..|.+|+++..+
T Consensus 186 tl~AayLI~-~GmspeeAI~~VR~~RPgA-In~~Q~~fL~~y~~~~~k 231 (241)
T PTZ00393 186 VLASIVLIE-FGMDPIDAIVFIRDRRKGA-INKRQLQFLKAYKKKKKK 231 (241)
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhccc
Confidence 999999998 6999999999999999987 689999999999998643
No 12
>KOG0443 consensus Actin regulatory proteins (gelsolin/villin family) [Cytoskeleton]
Probab=99.72 E-value=7e-18 Score=190.93 Aligned_cols=143 Identities=19% Similarity=0.217 Sum_probs=119.2
Q ss_pred ceeeeecCCCCCCCccccccccCCCcccccCCCCeEEEecCCeEEEEeCCCCChHHHHHHHHHHHHHHHHhh-cCCcEEE
Q 006271 273 LRIYRIAPHSSYDPLHLVPKLLNYPVAQGFDTRGAFIVLVPSAIYVWIGKNCSVMMSNRAREAANQVIRYEK-AQGQITS 351 (653)
Q Consensus 273 ~RLYRV~g~s~~dp~~lVpk~ev~~~~sSLnS~d~FILd~~~~IYVW~Gk~s~~~er~~A~~~A~~I~~~e~-~~~~I~v 351 (653)
.||||++|. ++|+..+|++.+++||.+||||||+++.||+|+|++++..||.+|+++|++|++.++ ++++|.+
T Consensus 139 ~rL~~~KGk------r~vr~~eV~~~~sS~N~gDvFILD~g~~i~qw~G~~Ss~~ER~KAl~~~~~IrD~e~~Gr~~V~v 212 (827)
T KOG0443|consen 139 VRLFHCKGK------RNVRVKEVPFSWSSLNHGDVFILDTGSKIYQWNGPNSSIQERAKALEVVQYIRDNERDGRCEVAV 212 (827)
T ss_pred eEEEEEccc------eeEEEEEEEeehhhcCCCcEEEEEcCCceEEEcCCcccHHHHHHHHHHHHHhhccCCCCceeEEE
Confidence 499999995 568888999999999999999999999999999999999999999999999998874 4678888
Q ss_pred cCCCCC-----hHHHHHHhcCCCC-CCCCC----CcccccCCceeEEeecCCccEE--EeccCCCCCCCCCchhhhhhcc
Q 006271 352 IKEGEE-----PLEFWDALVRGQF-FADGC----NKEEVKNEQVSFSGSNKIATLM--QDGAGEIDEYDLDFELFHKALD 419 (653)
Q Consensus 352 I~EG~E-----p~~FW~aLGgk~~-~~~~~----~~~~~~~~pRLf~~Sd~sG~f~--ee~~~~f~Q~DLd~e~v~~~~~ 419 (653)
|+.|++ ..+||..+||..+ .+... .........+||+|+|++|.+. ++..+++.|+.|+.++.|++|.
T Consensus 213 vdd~~~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~~s~~~kLYkVsd~~g~l~v~~va~~~l~qdlLd~~dCYILD~ 292 (827)
T KOG0443|consen 213 VDDGKEAADSDLGEFWGFVLGFAPALPKKSPDDDDEQANSAAAKLYKVSDASGGLKVPVVADGPLTKDLLDTEDCYILDC 292 (827)
T ss_pred ecCcccccCchHHHHHHhhcCcCccCCCCCcchhhhhhhccccEEEEEeccCCCccccccccchhhHHhhccCCeEEEec
Confidence 987653 4589999998655 33311 1111256789999999999998 4444569999999999999999
Q ss_pred CC
Q 006271 420 GG 421 (653)
Q Consensus 420 gg 421 (653)
||
T Consensus 293 g~ 294 (827)
T KOG0443|consen 293 GG 294 (827)
T ss_pred CC
Confidence 75
No 13
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=99.59 E-value=1.1e-14 Score=144.22 Aligned_cols=118 Identities=18% Similarity=0.329 Sum_probs=99.0
Q ss_pred HHHHHhCCCcEEEEcccCCCc--CccCCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCCCCchHHHH
Q 006271 141 RGILRQNGITHVLNCVGFVCP--EYFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSL 218 (653)
Q Consensus 141 ~e~Lk~~GIt~VLNl~~e~~p--~~~~~~i~yl~ipI~D~~~~dl~~~L~~av~fI~~~~~~ggrVLVHC~aGiSRSatV 218 (653)
...++.++++.|+.+.+...+ .+...++.++++++.|...++. ..+.+.++.++.+.+ ||+|.|||++|.||+++|
T Consensus 87 ~~~~~~~~v~s~vrln~~~yd~~~f~~~Gi~h~~l~f~Dg~tP~~-~~v~~fv~i~e~~~~-~g~iaVHCkaGlGRTG~l 164 (225)
T KOG1720|consen 87 IQYFKNNNVTSIVRLNKRLYDAKRFTDAGIDHHDLFFADGSTPTD-AIVKEFVKIVENAEK-GGKIAVHCKAGLGRTGTL 164 (225)
T ss_pred HHHhhhcccceEEEcCCCCCChHHhcccCceeeeeecCCCCCCCH-HHHHHHHHHHHHHHh-cCeEEEEeccCCCchhHH
Confidence 356778999999998654322 2345689999999999988776 567778888888888 999999999999999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHcCccccChhhHHHHHHHHH
Q 006271 219 VIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQK 260 (653)
Q Consensus 219 ViAYLM~~~g~SleeAl~~Vr~~RP~i~PN~gF~~QL~~~Ek 260 (653)
++||||+.+|++..||+++||..||.+...+.+...+.++..
T Consensus 165 iAc~lmy~~g~ta~eaI~~lR~~RpG~V~gpqQ~~l~~~q~~ 206 (225)
T KOG1720|consen 165 IACYLMYEYGMTAGEAIAWLRICRPGAVIGPQQHKLLHKQRD 206 (225)
T ss_pred HHHHHHHHhCCCHHHHHHHHHhcCCccccCHHHHHHHHHHHH
Confidence 999999999999999999999999988777777776765544
No 14
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.55 E-value=2.8e-14 Score=140.39 Aligned_cols=96 Identities=22% Similarity=0.309 Sum_probs=80.5
Q ss_pred cCCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCCCCchHHHHHHHHHHhh-cCCCHHHHHHHHHHHc
Q 006271 164 FKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWR-EGQSFEDAFQYVKAAR 242 (653)
Q Consensus 164 ~~~~i~yl~ipI~D~~~~dl~~~L~~av~fI~~~~~~ggrVLVHC~aGiSRSatVViAYLM~~-~g~SleeAl~~Vr~~R 242 (653)
...++.+.++|+.|...+++ ..+++++++|+.++++|++|+|||.+|+|||+|+++||||++ +++..++|+.+++.+|
T Consensus 69 ~~~~~~~~~~~~~D~~~p~~-~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~~~~~i~~~~~~r 147 (180)
T COG2453 69 ENDGIQVLHLPILDGTVPDL-EDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADEAIAVKRRRR 147 (180)
T ss_pred ccCCceeeeeeecCCCCCcH-HHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCCHHHHHHHHHhcC
Confidence 34578999999999998888 889999999999999999999999999999999999999999 5556677777777777
Q ss_pred CccccChhhHHHHHHHHHHh
Q 006271 243 GVTNPNMGFACQLLLCQKRV 262 (653)
Q Consensus 243 P~i~PN~gF~~QL~~~Ek~L 262 (653)
+. ++....+++..|+...
T Consensus 148 ~~--~v~~~~q~~~~~e~~~ 165 (180)
T COG2453 148 PG--AVVTEIQHLFELEQEL 165 (180)
T ss_pred Cc--ccccHHHHHHHHHHHH
Confidence 76 5655566666666554
No 15
>smart00262 GEL Gelsolin homology domain. Gelsolin/severin/villin homology domain. Calcium-binding and actin-binding. Both intra- and extracellular domains.
Probab=99.52 E-value=3.9e-14 Score=123.33 Aligned_cols=76 Identities=26% Similarity=0.365 Sum_probs=68.7
Q ss_pred cccCCCcccccCCCCeEEEecCCeEEEEeCCCCChHHHHHHHHHHHHHHHHhh-cCCcEEEcCCCCChHHHHHHhcC
Q 006271 292 KLLNYPVAQGFDTRGAFIVLVPSAIYVWIGKNCSVMMSNRAREAANQVIRYEK-AQGQITSIKEGEEPLEFWDALVR 367 (653)
Q Consensus 292 k~ev~~~~sSLnS~d~FILd~~~~IYVW~Gk~s~~~er~~A~~~A~~I~~~e~-~~~~I~vI~EG~Ep~~FW~aLGg 367 (653)
..++++...+|+++||||||++..||+|+|++|+..+|..|...|..+.+..+ ...+|.+++||.|+..||..|||
T Consensus 13 ~~~~~~~~~~L~s~d~fild~~~~iyvW~G~~as~~ek~~A~~~a~~~~~~~~~~~~~i~~v~eg~E~~~F~~~f~~ 89 (90)
T smart00262 13 VPEVPFSQGSLNSGDCYILDTGSEIYVWVGKKSSQDEKKKAAELAVELDDTLGPGPVQVRVVDEGKEPPEFWSLFGG 89 (90)
T ss_pred EEEcCCCHHHCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCHHHHHHhCC
Confidence 34667888999999999999999999999999999999999999998887654 45689999999999999999987
No 16
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.37 E-value=4.2e-13 Score=149.30 Aligned_cols=148 Identities=22% Similarity=0.296 Sum_probs=117.8
Q ss_pred CCCccceeeeecCCCCCCCccccccccCCCcccccCCCCeEEEecCCeEEEEeCCCCChHHHHHHHHHHHHHHHHh-hcC
Q 006271 268 SPNSMLRIYRIAPHSSYDPLHLVPKLLNYPVAQGFDTRGAFIVLVPSAIYVWIGKNCSVMMSNRAREAANQVIRYE-KAQ 346 (653)
Q Consensus 268 sp~~~~RLYRV~g~s~~dp~~lVpk~ev~~~~sSLnS~d~FILd~~~~IYVW~Gk~s~~~er~~A~~~A~~I~~~e-~~~ 346 (653)
.+.-+.||||+.+.... +...-|++..+||+.+.||+||.|..||+|.|-++......+|+.+|.+|.+.+ +++
T Consensus 617 ~~~h~TRlYrv~~~g~~-----i~lEPVpl~~tSLDPRf~FlLD~G~~IyiW~G~~s~~t~~~KARLfAEkinK~eRKgK 691 (1255)
T KOG0444|consen 617 KPAHLTRLYRVGVNGTA-----IELEPVPLSVTSLDPRFCFLLDAGETIYIWSGYKSRITVSNKARLFAEKINKRERKGK 691 (1255)
T ss_pred chHHhhhhheeccccce-----eEeeccCccccccCcceEEEEeCCceEEEEeccchhcccchHHHHHHHHhhhhhccCc
Confidence 34567899998765211 111134678899999999999999999999999999888999999999999877 567
Q ss_pred CcEEEcCCCCChHHHHHHhcCCCCCCCCCC----cccc-cCCceeEEeecCCccEE--E--ecc-CCCCCCCCCchhhhh
Q 006271 347 GQITSIKEGEEPLEFWDALVRGQFFADGCN----KEEV-KNEQVSFSGSNKIATLM--Q--DGA-GEIDEYDLDFELFHK 416 (653)
Q Consensus 347 ~~I~vI~EG~Ep~~FW~aLGgk~~~~~~~~----~~~~-~~~pRLf~~Sd~sG~f~--e--e~~-~~f~Q~DLd~e~v~~ 416 (653)
.+|+.+.+|+|+.+||++|||.+..+.... +++. ...|+||++.-.-|++. + +.+ +.++|+.|++..||+
T Consensus 692 ~EI~l~rQg~e~pEFWqaLgg~p~e~~~~ikeHVPEdf~p~qpkLYkV~lGmGyLELPQvel~P~~~l~q~lL~sk~Vyi 771 (1255)
T KOG0444|consen 692 SEIELCRQGREPPEFWQALGGNPDEPQGAIKEHVPEDFVPEQPKLYKVNLGMGYLELPQVELLPKGILKQDLLGSKGVYI 771 (1255)
T ss_pred eeeehhhhcCCCHHHHHHhCCCCcccccchhhcCCcccCCCCcceEEEccccceeecchhhhchhhHHHHHhhcCCeEEE
Confidence 899999999999999999999887655332 2333 57899999999999998 2 222 367889999988888
Q ss_pred hccC
Q 006271 417 ALDG 420 (653)
Q Consensus 417 ~~~g 420 (653)
++..
T Consensus 772 LDc~ 775 (1255)
T KOG0444|consen 772 LDCN 775 (1255)
T ss_pred EecC
Confidence 7764
No 17
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.36 E-value=2e-12 Score=125.15 Aligned_cols=108 Identities=19% Similarity=0.250 Sum_probs=69.6
Q ss_pred cCCeEECChhh----------hcCHHHHHhCCCcEEEEcccCCC------cC----ccCCCcEEEEEEccCCCCCchHHH
Q 006271 127 ADHIYLGSDAV----------AKNRGILRQNGITHVLNCVGFVC------PE----YFKGDLVYKTLWLQDSPSEDITSI 186 (653)
Q Consensus 127 ~p~LYLGs~~~----------a~d~e~Lk~~GIt~VLNl~~e~~------p~----~~~~~i~yl~ipI~D~~~~dl~~~ 186 (653)
...|.+...+- ..|.+.|+..||+.||.++.... +. +-..++.++|+||.|...+++..
T Consensus 40 ~~~Lglt~~PG~k~~d~~RdL~~DL~~Lk~~G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~aPd~~~- 118 (168)
T PF05706_consen 40 SGFLGLTFLPGCKFKDWRRDLQADLERLKDWGAQDVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGSAPDFAA- 118 (168)
T ss_dssp SSEEEEES-TT-EETTEEB-HHHHHHHHHHTT--EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS---HHH-
T ss_pred cceeeeecCCCcccccccchHHHHHHHHHHCCCCEEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCCCCCHHH-
Confidence 34666665554 46778999999999999864211 11 22358999999999999888744
Q ss_pred HHHHHHHHHHHHHcCCeEEEEcCCCCchHHHHHHHHHHhhc-CCCHHHHH
Q 006271 187 LYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWRE-GQSFEDAF 235 (653)
Q Consensus 187 L~~av~fI~~~~~~ggrVLVHC~aGiSRSatVViAYLM~~~-g~SleeAl 235 (653)
+.++++.|...+++|++|+|||++|+|||++|++++|+... .++.++|+
T Consensus 119 ~~~i~~eL~~~L~~g~~V~vHC~GGlGRtGlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 119 AWQILEELAARLENGRKVLVHCRGGLGRTGLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSSSSHHHHHHHHHHHHH-SSS-HHHHH
T ss_pred HHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCChhhcC
Confidence 44678888899999999999999999999999999988764 58999986
No 18
>KOG0445 consensus Actin regulatory protein supervillin (gelsolin/villin family) [Cytoskeleton]
Probab=99.34 E-value=2.4e-12 Score=143.41 Aligned_cols=151 Identities=23% Similarity=0.268 Sum_probs=121.4
Q ss_pred ccceeeeecCCCCCCCccccccccCCCcccccCCCCeEEEecCC--eEEEEeCCCCChHHHHHHHHHHHHHHHHhh---c
Q 006271 271 SMLRIYRIAPHSSYDPLHLVPKLLNYPVAQGFDTRGAFIVLVPS--AIYVWIGKNCSVMMSNRAREAANQVIRYEK---A 345 (653)
Q Consensus 271 ~~~RLYRV~g~s~~dp~~lVpk~ev~~~~sSLnS~d~FILd~~~--~IYVW~Gk~s~~~er~~A~~~A~~I~~~e~---~ 345 (653)
...|+|+|.|..+...... ++.+..++|.|+-.||+...+ .||+|+|.++..+.+..+..+|+.+.+.+. .
T Consensus 643 ~~erlY~v~G~vs~Et~l~----Ev~c~~S~LRSr~smv~~~~~~~~~~~whg~k~~~ht~~v~v~aa~~~~~q~pgs~~ 718 (919)
T KOG0445|consen 643 EEERLYCVRGEVSVETNLL----EVACHCSSLRSRTSMVVLNVNKALIYLWHGCKAQAHTKEVGVTAANKIKEQCPGSSS 718 (919)
T ss_pred chhheeeEecccccchhhh----HhhhccccccccceEEEEeccccceEEEecccCCcchhhHhHHHHHHHHHhCCCccc
Confidence 4458999999876655544 889999999999999998765 799999999999999999999999998873 3
Q ss_pred CCcEEEcCCCCChHHHHHHhcCCCCCCCCCCcccccCCceeEEeecCCccEEEeccC-CCCCCCCCchhhhhhccCCCcC
Q 006271 346 QGQITSIKEGEEPLEFWDALVRGQFFADGCNKEEVKNEQVSFSGSNKIATLMQDGAG-EIDEYDLDFELFHKALDGGVVP 424 (653)
Q Consensus 346 ~~~I~vI~EG~Ep~~FW~aLGgk~~~~~~~~~~~~~~~pRLf~~Sd~sG~f~ee~~~-~f~Q~DLd~e~v~~~~~gg~vp 424 (653)
++.+++|+||.|+..||++||.+. .++.+|||..+... ..+..+ .-|+..+..+++|.+
T Consensus 719 ~~~~~Eveegs~~~~~~~alGrkd----------f~~~~RlF~~sS~q---a~els~p~rc~~pFsQ~~Ly~a------- 778 (919)
T KOG0445|consen 719 KVTIHEVEEGSEPLGFWDALGRKD----------FNFAPRLFILSSSQ---ATELSYPARCPMPFSQEDLYSA------- 778 (919)
T ss_pred cceeEeecCCCCchhhhhhccccc----------ccccceeeeccchh---hhhccCcccCCCcccHHHHhhh-------
Confidence 457999999999999999999765 45789999987655 222222 335566666666666
Q ss_pred ceeeccCCcceeeccccccchhhhhhhc
Q 006271 425 PFSVSNAGSETCVPARESGWCRLRRKFV 452 (653)
Q Consensus 425 ~~~~~~~~~e~~l~~~~~~~~~~~~~~~ 452 (653)
||+|||+|+||=- |.+-| |||
T Consensus 779 --fLvD~gdelwLW~----w~s~r-~~A 799 (919)
T KOG0445|consen 779 --FLVDNGDELWLWQ----WASDR-KSA 799 (919)
T ss_pred --eeeccCCeeEeeh----hhhHH-HHH
Confidence 9999999999965 88888 454
No 19
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=99.27 E-value=1.3e-11 Score=120.14 Aligned_cols=138 Identities=13% Similarity=0.122 Sum_probs=82.0
Q ss_pred cccccccCCeEECChhhhcCHHHHHhCCCcEEEEcccCCCcCc-----cCCCcEEEEEEccCCCCC--c-hHHHHHHHHH
Q 006271 121 KECSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCPEY-----FKGDLVYKTLWLQDSPSE--D-ITSILYDVFD 192 (653)
Q Consensus 121 ~~~s~I~p~LYLGs~~~a~d~e~Lk~~GIt~VLNl~~e~~p~~-----~~~~i~yl~ipI~D~~~~--d-l~~~L~~av~ 192 (653)
.+...|.++||-|+.+.+.+..+|+++||+.||+|..+..+.. ...++++.++++...... . -...+.++++
T Consensus 5 ~nF~~V~~~vYRS~~P~~~n~~fL~~L~LKTII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~ 84 (164)
T PF03162_consen 5 LNFGMVEPGVYRSAQPTPANFPFLERLGLKTIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEALE 84 (164)
T ss_dssp TT-EEEETTEEEESS--HHHHHHHHHHT-SEEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HHHHHHHHH
T ss_pred ccccCCCCCccCCCCCChhhHHHHHHCCCceEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHHH
Confidence 3467899999999999999999999999999999987643221 246899999998755431 1 1234555665
Q ss_pred HHHHHHHcCCeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHHcCccccChhhHHHHHHHHHHh
Q 006271 193 YFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKRV 262 (653)
Q Consensus 193 fI~~~~~~ggrVLVHC~aGiSRSatVViAYLM~~~g~SleeAl~~Vr~~RP~i~PN~gF~~QL~~~Ek~L 262 (653)
+|.+. .+.+|||||..|..|+++||++|- +.+||++..|++..+.--.. ..+..-...+..|+.++
T Consensus 85 ~ild~--~n~PvLiHC~~G~~rTG~vvg~lR-k~Q~W~~~~i~~Ey~~f~~~-~~~~~~~~fIe~f~~~~ 150 (164)
T PF03162_consen 85 IILDP--RNYPVLIHCNHGKDRTGLVVGCLR-KLQGWSLSSIFDEYRRFAGP-KIRYLDEQFIELFDVEL 150 (164)
T ss_dssp HHH-G--GG-SEEEE-SSSSSHHHHHHHHHH-HHTTB-HHHHHHHHHHHHGG-G--HHHHHHHHT-----
T ss_pred HHhCC--CCCCEEEEeCCCCcchhhHHHHHH-HHcCCCHHHHHHHHHHhcCC-CCcHHHHHHHHhcCcce
Confidence 55444 457999999999999999999998 77899999999988753221 33444444445555554
No 20
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=99.23 E-value=1.3e-10 Score=109.49 Aligned_cols=116 Identities=19% Similarity=0.224 Sum_probs=85.2
Q ss_pred cccccCCeEECChhhhcCHHHHHhCCCcEEEEcccCCC----cCc-------cCCCcEEEEEEccCCCCCchHHHHHHHH
Q 006271 123 CSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVC----PEY-------FKGDLVYKTLWLQDSPSEDITSILYDVF 191 (653)
Q Consensus 123 ~s~I~p~LYLGs~~~a~d~e~Lk~~GIt~VLNl~~e~~----p~~-------~~~~i~yl~ipI~D~~~~dl~~~L~~av 191 (653)
+.+|.+.+|+++.....+.+.|+++||+.|||+..... |.. ...++.|+++|+......+ . .+.
T Consensus 2 ~~~i~~~~~~s~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~~~~~--~---~v~ 76 (135)
T TIGR01244 2 IRKLTEHLYVSPQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAGDITP--D---DVE 76 (135)
T ss_pred ceEcCCCeeEcCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCCCCCH--H---HHH
Confidence 45799999999999999999999999999999975321 111 1258999999987543211 1 122
Q ss_pred HHHHHHHHcCCeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHHcCcc
Q 006271 192 DYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVT 245 (653)
Q Consensus 192 ~fI~~~~~~ggrVLVHC~aGiSRSatVViAYLM~~~g~SleeAl~~Vr~~RP~i 245 (653)
.|.+......++||+||++|. |++++.+.++.. .|++.+++++..+..--.+
T Consensus 77 ~f~~~~~~~~~pvL~HC~sG~-Rt~~l~al~~~~-~g~~~~~i~~~~~~~G~~~ 128 (135)
T TIGR01244 77 TFRAAIGAAEGPVLAYCRSGT-RSSLLWGFRQAA-EGVPVEEIVRRAQAAGYDL 128 (135)
T ss_pred HHHHHHHhCCCCEEEEcCCCh-HHHHHHHHHHHH-cCCCHHHHHHHHHHcCCCc
Confidence 222222234689999999999 998887666655 6999999999998775544
No 21
>PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) []. It can promote nucleation (the assembly of monomers into filaments), as well as sever existing filaments. In addition, this protein binds with high affinity to fibronectin. Plasma gelsolin and cytoplasmic gelsolin are derived from a single gene by alternate initiation sites and differential splicing. Sequence comparisons indicate an evolutionary relationship between gelsolin, villin, fragmin and severin []. Six large repeating segments occur in gelsolin and villin, and 3 similar segments in severin and fragmin. While the multiple repeats have yet to be related to any known function of the actin-severing proteins, the superfamily appears to have evolved from an ancestral sequence of 120 to 130 amino acid residues [].; PDB: 3FG6_F 1RGI_G 2FGH_A 1D0N_B 3EGD_B 2NUP_B 2NUT_B 3EGX_B 1JHW_A 1J72_A ....
Probab=99.22 E-value=1.1e-11 Score=103.87 Aligned_cols=69 Identities=22% Similarity=0.383 Sum_probs=62.6
Q ss_pred cCCCcccccCCCCeEEEecCCeEEEEeCCCCChHHHHHHHHHHHHHH-HHhhcCCcEEEcCCCCChHHHH
Q 006271 294 LNYPVAQGFDTRGAFIVLVPSAIYVWIGKNCSVMMSNRAREAANQVI-RYEKAQGQITSIKEGEEPLEFW 362 (653)
Q Consensus 294 ev~~~~sSLnS~d~FILd~~~~IYVW~Gk~s~~~er~~A~~~A~~I~-~~e~~~~~I~vI~EG~Ep~~FW 362 (653)
++..+..+|+++||||||++..||+|+|++++..++..|...|..+. ........+..+.||+|+..||
T Consensus 7 ~~~~s~~~L~s~~~yIld~~~~i~vW~G~~~~~~e~~~a~~~a~~~~~~~~~~~~~~~~~~eg~E~~~F~ 76 (76)
T PF00626_consen 7 QVPLSQSSLNSDDCYILDCGYEIFVWVGKKSSPEEKAFAAQLAQELLSEERPPLPEVIRVEEGKEPAEFL 76 (76)
T ss_dssp EESSSGGGEETTSEEEEEESSEEEEEEHTTSHHHHHHHHHHHHHHHHHHHTTTTSEEEEEETTHHHHHHH
T ss_pred cCCCCHHHcCCCCEEEEEeCCCcEEEEeccCCHHHHHHHHHHHHHhhhhcCCCCCEEEEecCCCCChHHC
Confidence 55788999999999999999999999999999999999999999998 5445667788889999999998
No 22
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.17 E-value=4.1e-12 Score=141.58 Aligned_cols=141 Identities=18% Similarity=0.283 Sum_probs=108.0
Q ss_pred CccceeeeecCCCC-CCCccccccccCCCcccccCCCCeEEEecCC-------eEEEEeCCCCChHHHHHHHHHHHHHHH
Q 006271 270 NSMLRIYRIAPHSS-YDPLHLVPKLLNYPVAQGFDTRGAFIVLVPS-------AIYVWIGKNCSVMMSNRAREAANQVIR 341 (653)
Q Consensus 270 ~~~~RLYRV~g~s~-~dp~~lVpk~ev~~~~sSLnS~d~FILd~~~-------~IYVW~Gk~s~~~er~~A~~~A~~I~~ 341 (653)
...+.+|+++.+.. ...+. +++.+.+..|||..||||..|. .+|+|.|+.|+..+ ..+|..+..
T Consensus 1038 ~~~pelfq~R~NGsalctR~----IQin~da~~LnS~FC~iL~vPFe~~~~~gvvy~w~gk~sdp~e----~~~a~d~~~ 1109 (1255)
T KOG0444|consen 1038 GKWPELFQMRANGSALCTRT----IQINCDANQLNSAFCHMLRIPFEEDGHRGVVYVWMGKDSDPRE----HEFASDLVV 1109 (1255)
T ss_pred CCCchheeeecCCccceeee----EEecCcHHHHhhhhHheEecccccCCCceEEEEEeccCCChHH----HHHHHHhcC
Confidence 45567899987643 23333 4889999999999999998763 68999999999844 444444432
Q ss_pred Hh-hcCCcEEEcCCCCChHHHHHHhcCCCCCCCCCCcccccCCceeEEeecCCccEE-EeccCCCCCCCCCchhhhhhcc
Q 006271 342 YE-KAQGQITSIKEGEEPLEFWDALVRGQFFADGCNKEEVKNEQVSFSGSNKIATLM-QDGAGEIDEYDLDFELFHKALD 419 (653)
Q Consensus 342 ~e-~~~~~I~vI~EG~Ep~~FW~aLGgk~~~~~~~~~~~~~~~pRLf~~Sd~sG~f~-ee~~~~f~Q~DLd~e~v~~~~~ 419 (653)
.- .....+++++||+|++.||..+|++.+|.++.. .....|||+|++..|+|. .+.+.+||||||+.++++..+.
T Consensus 1110 ~~~d~~~~~~~~~egee~e~fw~~~g~~k~ye~d~~---~~khtrlfrc~nekgyfa~sek~~DfcqDDl~dddim~ldn 1186 (1255)
T KOG0444|consen 1110 RDDDNDFRIVEVQEGEENEEFWKVLGGKKKYETDSS---FVKHTRLFRCTNEKGYFAISEKTVDFCQDDLDDDDIMILDN 1186 (1255)
T ss_pred ccccchhhhhccCCccchHHHhcccCCCCccchhHH---HHHHHHHHhccchhhhhhHhHhhhhhhhccchhhhhhhhcc
Confidence 11 122357889999999999999999998876431 234578999999999999 8887899999999999988766
Q ss_pred CC
Q 006271 420 GG 421 (653)
Q Consensus 420 gg 421 (653)
|-
T Consensus 1187 g~ 1188 (1255)
T KOG0444|consen 1187 GD 1188 (1255)
T ss_pred cc
Confidence 54
No 23
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=99.10 E-value=9.8e-10 Score=102.40 Aligned_cols=117 Identities=26% Similarity=0.312 Sum_probs=83.2
Q ss_pred cCHHHHHhCCCcEEEEcccCCCcC--ccCCCcEEEEEEccCCCCCchHHHHHHHHHHHHH-HH-HcCCeEEEEcCCCCch
Q 006271 139 KNRGILRQNGITHVLNCVGFVCPE--YFKGDLVYKTLWLQDSPSEDITSILYDVFDYFED-VR-EQGGRVFVHCCQGVSR 214 (653)
Q Consensus 139 ~d~e~Lk~~GIt~VLNl~~e~~p~--~~~~~i~yl~ipI~D~~~~dl~~~L~~av~fI~~-~~-~~ggrVLVHC~aGiSR 214 (653)
.-.+.|+++|+++|+.+|+..... ....+|..+..+..|...+.- +..++=+..+.. .. +-|..|.|||.+|+||
T Consensus 32 ~fieELkKygvttvVRVCe~TYdt~~lek~GI~Vldw~f~dg~ppp~-qvv~~w~~l~~~~f~e~p~~cvavhcvaglgr 110 (173)
T KOG2836|consen 32 KFIEELKKYGVTTVVRVCEPTYDTTPLEKEGITVLDWPFDDGAPPPN-QVVDDWLSLVKTKFREEPGCCVAVHCVAGLGR 110 (173)
T ss_pred HHHHHHHhcCCeEEEEecccccCCchhhhcCceEeecccccCCCCch-HHHHHHHHHHHHHHhhCCCCeEEEEeecccCc
Confidence 456889999999999998643221 234577777777777654432 222222222221 12 2478999999999999
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHcCccccChhhHHHHHHHHHH
Q 006271 215 STSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKR 261 (653)
Q Consensus 215 SatVViAYLM~~~g~SleeAl~~Vr~~RP~i~PN~gF~~QL~~~Ek~ 261 (653)
.+.+|+..|+.. ||.+++|+++||++|..+ .|.. ||.-+|+.
T Consensus 111 apvlvalalie~-gmkyedave~ir~krrga-~n~k---ql~~leky 152 (173)
T KOG2836|consen 111 APVLVALALIEA-GMKYEDAVEMIRQKRRGA-INSK---QLLYLEKY 152 (173)
T ss_pred chHHHHHHHHHc-cccHHHHHHHHHHHhhcc-ccHH---HHHHHHHh
Confidence 999999999876 999999999999999985 7764 55544443
No 24
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=98.91 E-value=9.4e-09 Score=89.70 Aligned_cols=87 Identities=15% Similarity=0.201 Sum_probs=63.7
Q ss_pred EEEEEEccCCCCCchHHHHHHHHHHHHHHHH---cCCeEEEEcCCCCchHHHHHHHHHHhhc------CCCHHHHHHHHH
Q 006271 169 VYKTLWLQDSPSEDITSILYDVFDYFEDVRE---QGGRVFVHCCQGVSRSTSLVIAYLMWRE------GQSFEDAFQYVK 239 (653)
Q Consensus 169 ~yl~ipI~D~~~~dl~~~L~~av~fI~~~~~---~ggrVLVHC~aGiSRSatVViAYLM~~~------g~SleeAl~~Vr 239 (653)
.|+...+.|...++....|.+.++.+++... .+++|+|||.+|+|||++++++|+|... -.++.+++..+|
T Consensus 4 ~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir 83 (105)
T smart00012 4 HYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELR 83 (105)
T ss_pred EEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 3455556666555444555556666655544 3689999999999999999999998763 268889999999
Q ss_pred HHcCccccChhhHHHH
Q 006271 240 AARGVTNPNMGFACQL 255 (653)
Q Consensus 240 ~~RP~i~PN~gF~~QL 255 (653)
..|+..-.+..+...+
T Consensus 84 ~~r~~~~~~~~q~~~~ 99 (105)
T smart00012 84 KQRPGMVQTFEQYLFL 99 (105)
T ss_pred hhhhhhCCcHHHHHHH
Confidence 9999877766554444
No 25
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=98.91 E-value=9.4e-09 Score=89.70 Aligned_cols=87 Identities=15% Similarity=0.201 Sum_probs=63.7
Q ss_pred EEEEEEccCCCCCchHHHHHHHHHHHHHHHH---cCCeEEEEcCCCCchHHHHHHHHHHhhc------CCCHHHHHHHHH
Q 006271 169 VYKTLWLQDSPSEDITSILYDVFDYFEDVRE---QGGRVFVHCCQGVSRSTSLVIAYLMWRE------GQSFEDAFQYVK 239 (653)
Q Consensus 169 ~yl~ipI~D~~~~dl~~~L~~av~fI~~~~~---~ggrVLVHC~aGiSRSatVViAYLM~~~------g~SleeAl~~Vr 239 (653)
.|+...+.|...++....|.+.++.+++... .+++|+|||.+|+|||++++++|+|... -.++.+++..+|
T Consensus 4 ~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir 83 (105)
T smart00404 4 HYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELR 83 (105)
T ss_pred EEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 3455556666555444555556666655544 3689999999999999999999998763 268889999999
Q ss_pred HHcCccccChhhHHHH
Q 006271 240 AARGVTNPNMGFACQL 255 (653)
Q Consensus 240 ~~RP~i~PN~gF~~QL 255 (653)
..|+..-.+..+...+
T Consensus 84 ~~r~~~~~~~~q~~~~ 99 (105)
T smart00404 84 KQRPGMVQTFEQYLFL 99 (105)
T ss_pred hhhhhhCCcHHHHHHH
Confidence 9999877766554444
No 26
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=98.86 E-value=9.4e-09 Score=93.95 Aligned_cols=93 Identities=20% Similarity=0.250 Sum_probs=55.9
Q ss_pred cccccCCeEECChhhhcCHHHHHhCCCcEEEEcccCCC----cCc-------cCCCcEEEEEEccCCCCCchHHHHHHHH
Q 006271 123 CSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVC----PEY-------FKGDLVYKTLWLQDSPSEDITSILYDVF 191 (653)
Q Consensus 123 ~s~I~p~LYLGs~~~a~d~e~Lk~~GIt~VLNl~~e~~----p~~-------~~~~i~yl~ipI~D~~~~dl~~~L~~av 191 (653)
+.+|.+.+|+++.....+++.|++.||++|||+..... +.. ...++.|+++||.-.. +. ...+.
T Consensus 2 i~~i~~~~~vs~Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~---~~--~~~v~ 76 (110)
T PF04273_consen 2 IRQISDDLSVSGQPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGA---IT--EEDVE 76 (110)
T ss_dssp -EEEETTEEEECS--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT-------HHHHH
T ss_pred CEecCCCeEECCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCC---CC--HHHHH
Confidence 56899999999999999999999999999999974321 111 1358999999997532 21 13344
Q ss_pred HHHHHHHHcCCeEEEEcCCCCchHHHHHHH
Q 006271 192 DYFEDVREQGGRVFVHCCQGVSRSTSLVIA 221 (653)
Q Consensus 192 ~fI~~~~~~ggrVLVHC~aGiSRSatVViA 221 (653)
.|.+......++||+||+.|. |+.++.+.
T Consensus 77 ~f~~~l~~~~~Pvl~hC~sG~-Ra~~l~~l 105 (110)
T PF04273_consen 77 AFADALESLPKPVLAHCRSGT-RASALWAL 105 (110)
T ss_dssp HHHHHHHTTTTSEEEE-SCSH-HHHHHHHH
T ss_pred HHHHHHHhCCCCEEEECCCCh-hHHHHHHH
Confidence 444444445789999999998 88665443
No 27
>PLN02727 NAD kinase
Probab=98.67 E-value=8.8e-08 Score=112.45 Aligned_cols=99 Identities=11% Similarity=0.213 Sum_probs=76.4
Q ss_pred CeEECChhhhcCHHHHHhCCCcEEEEcccCCCc--Ccc--------CCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHH
Q 006271 129 HIYLGSDAVAKNRGILRQNGITHVLNCVGFVCP--EYF--------KGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVR 198 (653)
Q Consensus 129 ~LYLGs~~~a~d~e~Lk~~GIt~VLNl~~e~~p--~~~--------~~~i~yl~ipI~D~~~~dl~~~L~~av~fI~~~~ 198 (653)
.+|+++++.+.+.+.|.++||++|||+.++... .+. ..++.|+++|+.+...... +.+.++.+++++
T Consensus 262 ~~~rsgQpspe~la~LA~~GfKTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIPVs~~~apt~-EqVe~fa~~l~~-- 338 (986)
T PLN02727 262 AFWRGGQVTEEGLKWLLEKGFKTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPVEVRTAPSA-EQVEKFASLVSD-- 338 (986)
T ss_pred eEEEeCCCCHHHHHHHHHCCCeEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEeecCCCCCCCH-HHHHHHHHHHHh--
Confidence 589999999999999999999999999764431 121 2589999999977554433 344555555533
Q ss_pred HcCCeEEEEcCCCCchHHHHHHHHHHhhcCCC
Q 006271 199 EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (653)
Q Consensus 199 ~~ggrVLVHC~aGiSRSatVViAYLM~~~g~S 230 (653)
...++||+||+.|..|+++++++||.+..+..
T Consensus 339 slpkPVLvHCKSGarRAGamvA~yl~~~~~~~ 370 (986)
T PLN02727 339 SSKKPIYLHSKEGVWRTSAMVSRWKQYMTRSA 370 (986)
T ss_pred hcCCCEEEECCCCCchHHHHHHHHHHHHcccc
Confidence 34689999999999999999999999876643
No 28
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=98.66 E-value=1.1e-07 Score=90.55 Aligned_cols=112 Identities=19% Similarity=0.187 Sum_probs=81.9
Q ss_pred HHHHHhCCCcEEEEcccCCCcCccCCC---cEEEEEEccCCCC------CchHHHHHHHHHHHHHHHHcCCeEEEEcCCC
Q 006271 141 RGILRQNGITHVLNCVGFVCPEYFKGD---LVYKTLWLQDSPS------EDITSILYDVFDYFEDVREQGGRVFVHCCQG 211 (653)
Q Consensus 141 ~e~Lk~~GIt~VLNl~~e~~p~~~~~~---i~yl~ipI~D~~~------~dl~~~L~~av~fI~~~~~~ggrVLVHC~aG 211 (653)
.++..+.|-+++|++.........+.. -.++.+.+.|... ..-..+.+.+++|++++-+. ..+||||.+|
T Consensus 25 ae~~~rh~~t~mlsl~a~~t~~~~pa~~~~erhL~l~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~wp~~-apllIHC~aG 103 (172)
T COG5350 25 AETAARHGPTHMLSLLAKGTYFHRPAVIAAERHLTLHFNDIAEPDDGWIAPGEAHVRAIIDFADEWPRF-APLLIHCYAG 103 (172)
T ss_pred HHHHhhcCCceEEEeecccccccCccccchhhceeEeeccccCCCccccCCCHHHHHHHHHHHhcCccc-cceeeeeccc
Confidence 566678899999998653211111221 2445555555322 23346789999999998665 7999999999
Q ss_pred CchHHHHH-HHHHHhhcCCCHHHHHHHHHHHcCccccChhhHH
Q 006271 212 VSRSTSLV-IAYLMWREGQSFEDAFQYVKAARGVTNPNMGFAC 253 (653)
Q Consensus 212 iSRSatVV-iAYLM~~~g~SleeAl~~Vr~~RP~i~PN~gF~~ 253 (653)
+|||++++ +|-|.....+.-.++.+.++..+|.+.||++.+.
T Consensus 104 ISRStA~A~i~a~ala~~~de~ela~~Lra~sp~atPN~Rlia 146 (172)
T COG5350 104 ISRSTAAALIAALALAPDMDETELAERLRALSPYATPNPRLIA 146 (172)
T ss_pred cccchHHHHHHHHhhccccChHHHHHHHHhcCcccCCChhHHH
Confidence 99997665 4556777799999999999999999999987554
No 29
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=98.51 E-value=4.1e-07 Score=92.06 Aligned_cols=82 Identities=15% Similarity=0.228 Sum_probs=58.4
Q ss_pred ccCCCCCchHHHHHHHHHHHHHHHH--cCCeEEEEcCCCCchHHHHHHHHHHhhc-----CCCHHHHHHHHHHHcCcccc
Q 006271 175 LQDSPSEDITSILYDVFDYFEDVRE--QGGRVFVHCCQGVSRSTSLVIAYLMWRE-----GQSFEDAFQYVKAARGVTNP 247 (653)
Q Consensus 175 I~D~~~~dl~~~L~~av~fI~~~~~--~ggrVLVHC~aGiSRSatVViAYLM~~~-----g~SleeAl~~Vr~~RP~i~P 247 (653)
..|...++-...|.+.++.+++... .+++|+|||.+|+|||+++++++++... .+++.+|+..||+.|+.+-.
T Consensus 138 W~d~~~p~~~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~~~~~~~~~v~~iR~~R~~~v~ 217 (231)
T cd00047 138 WPDHGVPESPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTVKELRSQRPGMVQ 217 (231)
T ss_pred CCCCCccCChHHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHHHHhcCCCCHHHHHHHHHhccccccC
Confidence 3444433333344444444444432 3689999999999999999999976543 68999999999999998877
Q ss_pred ChhhHHHHH
Q 006271 248 NMGFACQLL 256 (653)
Q Consensus 248 N~gF~~QL~ 256 (653)
+..+...+.
T Consensus 218 ~~~Qy~f~~ 226 (231)
T cd00047 218 TEEQYIFLY 226 (231)
T ss_pred CHHHHHHHH
Confidence 765555443
No 30
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=98.42 E-value=9e-07 Score=91.23 Aligned_cols=70 Identities=14% Similarity=0.259 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHc-CCeEEEEcCCCCchHHHHHHHHHHhh-----cCCCHHHHHHHHHHHcCccccChhhHHHHH
Q 006271 187 LYDVFDYFEDVREQ-GGRVFVHCCQGVSRSTSLVIAYLMWR-----EGQSFEDAFQYVKAARGVTNPNMGFACQLL 256 (653)
Q Consensus 187 L~~av~fI~~~~~~-ggrVLVHC~aGiSRSatVViAYLM~~-----~g~SleeAl~~Vr~~RP~i~PN~gF~~QL~ 256 (653)
+.+.+..++..... +++|+|||.+|+|||+++++++++.. ...++.+++..||..|+.+-.+..+...+.
T Consensus 178 ~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~~~v~v~~~v~~lR~~R~~~v~~~~Qy~f~~ 253 (258)
T smart00194 178 ILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEIVKELRSQRPGMVQTEEQYIFLY 253 (258)
T ss_pred HHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHHHHHcCCCCHHHHHHHHHhccccccCCHHHHHHHH
Confidence 33333444433332 68999999999999999999987743 468999999999999999888876655543
No 31
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=98.37 E-value=1.4e-06 Score=84.28 Aligned_cols=110 Identities=18% Similarity=0.264 Sum_probs=55.9
Q ss_pred ccC-CeEECChhh---hcCHHHHHhCCCcEEEEcccCC----CcCccCCCcEEEEEEccCCCCCc---hHH---------
Q 006271 126 IAD-HIYLGSDAV---AKNRGILRQNGITHVLNCVGFV----CPEYFKGDLVYKTLWLQDSPSED---ITS--------- 185 (653)
Q Consensus 126 I~p-~LYLGs~~~---a~d~e~Lk~~GIt~VLNl~~e~----~p~~~~~~i~yl~ipI~D~~~~d---l~~--------- 185 (653)
|-+ .||-++... ..+.+.|.++||+.||++.... .|.....++.++++|+.+..... +..
T Consensus 16 ir~g~lyRS~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 95 (164)
T PF13350_consen 16 IRPGRLYRSGNLSNLTEADLERLRELGIRTIIDLRSPTERERAPDPLIDGVQYVHIPIFGDDASSPDKLAELLQSSADAP 95 (164)
T ss_dssp S-TTSEEEES--TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS----TT-EEEE--SS-S-TTH----------HHHHH
T ss_pred ecCCcEEecCCcCcCCHHHHHHHHhCCCCEEEECCCccccccCCCCCcCCceeeeecccccccccccccccccccccchh
Confidence 444 478777443 4678899999999999996421 13345568999999998654431 110
Q ss_pred -HH------------HHHHHHHHHHHHcCCeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHH
Q 006271 186 -IL------------YDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQ 236 (653)
Q Consensus 186 -~L------------~~av~fI~~~~~~ggrVLVHC~aGiSRSatVViAYLM~~~g~SleeAl~ 236 (653)
.+ +...++++......+.|||||.+|+.|++.+++..| ...|.+.++.++
T Consensus 96 ~~~~~~Y~~~~~~~~~~~~~~~~~l~~~~~p~l~HC~aGKDRTG~~~alll-~~lGV~~~~I~~ 158 (164)
T PF13350_consen 96 RGMLEFYREMLESYAEAYRKIFELLADAPGPVLFHCTAGKDRTGVVAALLL-SLLGVPDEDIIA 158 (164)
T ss_dssp HHHHHHHHHGGGSTHHHHHHHHHHHH-TT--EEEE-SSSSSHHHHHHHHHH-HHTT--HHHHHH
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHhccCCCcEEEECCCCCccHHHHHHHHH-HHcCCCHHHHHH
Confidence 01 111222222333457999999999999977655554 556999887765
No 32
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=98.24 E-value=4.4e-06 Score=92.78 Aligned_cols=142 Identities=18% Similarity=0.165 Sum_probs=95.7
Q ss_pred ccccccccCCeEECChhhhcCHHHHHhCC--------------CcEEEEcccCCCcCccCC--CcEEEEEEccCCCCCch
Q 006271 120 DKECSRIADHIYLGSDAVAKNRGILRQNG--------------ITHVLNCVGFVCPEYFKG--DLVYKTLWLQDSPSEDI 183 (653)
Q Consensus 120 ~~~~s~I~p~LYLGs~~~a~d~e~Lk~~G--------------It~VLNl~~e~~p~~~~~--~i~yl~ipI~D~~~~dl 183 (653)
+-+++-|+++|..-+++...... +.++. -=.|.||+++.. |... .-+...+++.|...+.+
T Consensus 12 DLDltYIT~rIIamsfPa~~~es-~yRN~l~dV~~fL~s~H~~~y~vyNL~~er~--yd~~~f~g~V~~~~~~Dh~~P~L 88 (434)
T KOG2283|consen 12 DLDLTYITSRIIAMSFPAEGIES-LYRNNLEDVVLFLDSKHKDHYKVYNLSSERL--YDPSRFHGRVARFGFDDHNPPPL 88 (434)
T ss_pred cccceeeeeeEEEEeCCCCcchh-hhcCCHHHHHHHHhhccCCceEEEecCcccc--CCccccccceeecCCCCCCCCcH
Confidence 34466677766666655443222 22332 334667764321 2222 22455678888888777
Q ss_pred HHHHHHHHHHHHHHHHc--CCeEEEEcCCCCchHHHHHHHHHHhhcCCC-HHHHHHHHHHHc---C--ccccChhhHHHH
Q 006271 184 TSILYDVFDYFEDVREQ--GGRVFVHCCQGVSRSTSLVIAYLMWREGQS-FEDAFQYVKAAR---G--VTNPNMGFACQL 255 (653)
Q Consensus 184 ~~~L~~av~fI~~~~~~--ggrVLVHC~aGiSRSatVViAYLM~~~g~S-leeAl~~Vr~~R---P--~i~PN~gF~~QL 255 (653)
..+..+++-++..+.+ ...|.|||++|++|+++|++||||+..-.. +++|+++.-.+| . ...--+...+.+
T Consensus 89 -~~l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~~icA~L~~~~~~~ta~eald~~~~kR~~~~~~~~~~~PSq~RYv 167 (434)
T KOG2283|consen 89 -ELLCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGVMICAYLIYSGISATAEEALDYFNEKRFDEGKSKGVTIPSQRRYV 167 (434)
T ss_pred -HHHHHHHHCHHHHHhcCccceEEEEccCCCcceEEEEeHHHHhhhhcCCHHHHHHHHhhhhccccccCCccCchhhHHH
Confidence 6677788888888875 478999999999999999999999987665 999999999999 3 122335566777
Q ss_pred HHHHHHhccC
Q 006271 256 LLCQKRVHAM 265 (653)
Q Consensus 256 ~~~Ek~L~~~ 265 (653)
..|+..+.+.
T Consensus 168 ~Y~~~~l~~~ 177 (434)
T KOG2283|consen 168 GYFSRVLLNG 177 (434)
T ss_pred HHHHHHhhcC
Confidence 7777744443
No 33
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.23 E-value=1.5e-05 Score=73.49 Aligned_cols=112 Identities=19% Similarity=0.191 Sum_probs=77.9
Q ss_pred cccccCCeEECChhhhcCHHHHHhCCCcEEEEcccCCC----cCc-------cCCCcEEEEEEccCCCCCchHHHHHHHH
Q 006271 123 CSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVC----PEY-------FKGDLVYKTLWLQDSPSEDITSILYDVF 191 (653)
Q Consensus 123 ~s~I~p~LYLGs~~~a~d~e~Lk~~GIt~VLNl~~e~~----p~~-------~~~~i~yl~ipI~D~~~~dl~~~L~~av 191 (653)
+-+|.+.|+|+++....|...++.+|++.|||...... |.. -..++.|.++|+.-..... .++-
T Consensus 3 i~~I~d~lsVsgQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~~iT~-----~dV~ 77 (130)
T COG3453 3 IRRINDRLSVSGQISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGGGITE-----ADVE 77 (130)
T ss_pred ceecccceeecCCCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCCCCCH-----HHHH
Confidence 56899999999999999999999999999999754221 111 1247899999997543221 1122
Q ss_pred HHHHHHHHcCCeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 006271 192 DYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAA 241 (653)
Q Consensus 192 ~fI~~~~~~ggrVLVHC~aGiSRSatVViAYLM~~~g~SleeAl~~Vr~~ 241 (653)
.|-+..-+.+++||.||+.|- ||-++-..-. ...||+.+++.++=+.+
T Consensus 78 ~f~~Al~eaegPVlayCrsGt-Rs~~ly~~~~-~~~gm~~de~~a~g~a~ 125 (130)
T COG3453 78 AFQRALDEAEGPVLAYCRSGT-RSLNLYGLGE-LDGGMSRDEIEALGQAA 125 (130)
T ss_pred HHHHHHHHhCCCEEeeecCCc-hHHHHHHHHH-HhcCCCHHHHHHHHHhh
Confidence 233333346799999999995 8855433333 45699999888765543
No 34
>KOG0445 consensus Actin regulatory protein supervillin (gelsolin/villin family) [Cytoskeleton]
Probab=98.22 E-value=1.2e-06 Score=98.79 Aligned_cols=101 Identities=17% Similarity=0.359 Sum_probs=79.0
Q ss_pred CCccceeeeecCCCCCCCccccccccCCCcccccCCCCeEEEecCCeEEEEeCCCCChHHHHHHHHHHHHHHHHh--hcC
Q 006271 269 PNSMLRIYRIAPHSSYDPLHLVPKLLNYPVAQGFDTRGAFIVLVPSAIYVWIGKNCSVMMSNRAREAANQVIRYE--KAQ 346 (653)
Q Consensus 269 p~~~~RLYRV~g~s~~dp~~lVpk~ev~~~~sSLnS~d~FILd~~~~IYVW~Gk~s~~~er~~A~~~A~~I~~~e--~~~ 346 (653)
|-.-.-|.+|+|... |....|++..++||++|||||..+..+|.|.|..+|..|+.+|.+++..|+... +.+
T Consensus 220 Pyk~vMLlqVkGr~h------VqtRLVeP~~ssln~gdCF~lv~~~~lf~yvG~faNviEk~kas~lc~~I~~k~dLgCt 293 (919)
T KOG0445|consen 220 PYKRVMLLQVKGRRH------VQTRLVEPRASSLNSGDCFLLVSPHCLFLYVGEFANVIEKAKASELCTLIQTKRDLGCT 293 (919)
T ss_pred CCCceEEEEEccccc------ceeEEechhhcccccCceEEEechhHHhhhhhHHHHHHHHhHHHHHHHHHhhcccCCce
Confidence 334456789999654 344466899999999999999999999999999999999999999999998543 455
Q ss_pred Cc-EEEcCCCC----ChHHHHHHhcCCCCCCCCC
Q 006271 347 GQ-ITSIKEGE----EPLEFWDALVRGQFFADGC 375 (653)
Q Consensus 347 ~~-I~vI~EG~----Ep~~FW~aLGgk~~~~~~~ 375 (653)
++ |+.|.+-. -...||+.|||...|+...
T Consensus 294 At~ivtit~~~~~t~~~~~Fw~llg~qs~~~~~g 327 (919)
T KOG0445|consen 294 ATYIVTITEINTHTHAAKDFWKLLGGQSSYQSAG 327 (919)
T ss_pred eEEEEEEeccchhHHHHHHHHHHhCCccchhhcC
Confidence 53 55555533 2458999999998887743
No 35
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=98.17 E-value=8.4e-06 Score=91.10 Aligned_cols=88 Identities=18% Similarity=0.219 Sum_probs=63.8
Q ss_pred ccCCCCCchHHHHHHHHHHHHHHHHcC---------CeEEEEcCCCCchHHHHHHHHHHhhc-CCCHHHHHHHHHHHcCc
Q 006271 175 LQDSPSEDITSILYDVFDYFEDVREQG---------GRVFVHCCQGVSRSTSLVIAYLMWRE-GQSFEDAFQYVKAARGV 244 (653)
Q Consensus 175 I~D~~~~dl~~~L~~av~fI~~~~~~g---------grVLVHC~aGiSRSatVViAYLM~~~-g~SleeAl~~Vr~~RP~ 244 (653)
+.|+..++-...|.+.++.++.....+ ..++|||.+|+|||+++|++|+|+.. ..++++.+..+|..|+.
T Consensus 431 WPDHGVPpST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGRTGTFIAi~llk~~~~~sle~IV~dlR~qRng 510 (535)
T PRK15375 431 WPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVLKDNPHSNLEQVRADFRNSRNN 510 (535)
T ss_pred CCCCCCCCChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCCCCchHHHHHHHHHHhccccCCHHHHHHHHHhcCCc
Confidence 356544333233444555554442221 23479999999999999999999754 46899999999999997
Q ss_pred -cccChhhHHHHHHHHHHh
Q 006271 245 -TNPNMGFACQLLLCQKRV 262 (653)
Q Consensus 245 -i~PN~gF~~QL~~~Ek~L 262 (653)
+--+..++..|.+.+.++
T Consensus 511 ~MVQt~eQy~~l~~~~~~~ 529 (535)
T PRK15375 511 RMLEDASQFVQLKAMQAQL 529 (535)
T ss_pred cccccHHHHHHHHHHHHHH
Confidence 777888888888887765
No 36
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=98.15 E-value=1.4e-05 Score=89.30 Aligned_cols=135 Identities=18% Similarity=0.216 Sum_probs=101.2
Q ss_pred ccccCCeEECChhhhcC----HHHHHhCCCcEEEEcccCCCc-CccCCCcEEEEEEccCCC--CCchHHHHHHHHHHHHH
Q 006271 124 SRIADHIYLGSDAVAKN----RGILRQNGITHVLNCVGFVCP-EYFKGDLVYKTLWLQDSP--SEDITSILYDVFDYFED 196 (653)
Q Consensus 124 s~I~p~LYLGs~~~a~d----~e~Lk~~GIt~VLNl~~e~~p-~~~~~~i~yl~ipI~D~~--~~dl~~~L~~av~fI~~ 196 (653)
..++.+||+|.....-. ...-....+..||+|...... ........++++++.... .-++...|++++.|+..
T Consensus 290 ~~~~~~i~ig~~~~~l~~~~~~~~~~~~~~~~vI~~s~~~~~~~~~~~~~~~L~l~i~~~K~gs~~LR~~LP~i~~fv~~ 369 (451)
T PF04179_consen 290 DPGTTGIYIGKISSNLAISKAQLPDLESEFDCVINCSESPTPKESWPKSPKYLHLPIPSSKKGSRDLRKALPKICSFVRS 369 (451)
T ss_pred ccCCCCeEEeccCCccccchhhccccCCCcCEEEEcCCCcccccccCCCceEEeCcCCCCcccHHHHHHHHHHHHHHHHH
Confidence 34678999998765211 111234578899998654322 334567789999997543 35688899999999999
Q ss_pred HHHc--CCeEEEEcCCCCchHHHHHHHHHHhhcCC----------------CHHHHHHHHHHHcCccccChhhHHHHHHH
Q 006271 197 VREQ--GGRVFVHCCQGVSRSTSLVIAYLMWREGQ----------------SFEDAFQYVKAARGVTNPNMGFACQLLLC 258 (653)
Q Consensus 197 ~~~~--ggrVLVHC~aGiSRSatVViAYLM~~~g~----------------SleeAl~~Vr~~RP~i~PN~gF~~QL~~~ 258 (653)
.+.+ +++|||||..|...|++|++|.|++.++. ...+-+.+|.+.+|.++|.++.++++-.|
T Consensus 370 ~L~~~~~~~iLV~C~sGkDlSVgVaLaILc~~Fd~~g~~~~~~~~~~itK~~IR~rL~~I~~~~p~aNPSRaTLqsVNsF 449 (451)
T PF04179_consen 370 HLSSDPGKPILVCCDSGKDLSVGVALAILCKLFDDDGNFRDSFERPSITKDDIRQRLAWIISSRPDANPSRATLQSVNSF 449 (451)
T ss_pred HhcccCCCcEEEEcCCcchHHHHHHHHHHHHhcCcccCcccccccCCCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHh
Confidence 9888 89999999999999999999999998643 13345667777788888888888877654
No 37
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=98.15 E-value=1.3e-05 Score=81.68 Aligned_cols=118 Identities=13% Similarity=0.183 Sum_probs=88.2
Q ss_pred cccccccCCeEECChhhhcCHHHHHhCCCcEEEEcccCCCcC----cc-CCCcEEEEEEccCCC------CCchH-HHHH
Q 006271 121 KECSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCPE----YF-KGDLVYKTLWLQDSP------SEDIT-SILY 188 (653)
Q Consensus 121 ~~~s~I~p~LYLGs~~~a~d~e~Lk~~GIt~VLNl~~e~~p~----~~-~~~i~yl~ipI~D~~------~~dl~-~~L~ 188 (653)
.+.+.|.++||-++++...+..+|+.++++.||.++.+..|. ++ ..+|++.++.|.-.. ..++. ..+.
T Consensus 58 lnFs~V~~~lyRSg~P~~~NfsFL~~L~LksIisL~pE~yp~~nl~f~~~~~Ik~~~i~ie~~k~~~k~P~~~~~~~~i~ 137 (249)
T KOG1572|consen 58 LNFSMVDNGLYRSGFPRPENFSFLKTLHLKSIISLCPEPYPEENLNFLESNGIKLYQIGIEGEKDNKKEPFVNIPDHSIR 137 (249)
T ss_pred ccccccccceeecCCCCccchHHHHHhhhheEEEecCCCCChHHHHHHHhcCceEEEEecccccccccCCCCCChHHHHH
Confidence 446678889999999999999999999999999998775443 12 358899999987433 23332 3355
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 006271 189 DVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAA 241 (653)
Q Consensus 189 ~av~fI~~~~~~ggrVLVHC~aGiSRSatVViAYLM~~~g~SleeAl~~Vr~~ 241 (653)
.+++++.+ +.+.++||||..|..|++++|.+.- +.++|++.-.++..+..
T Consensus 138 ~~l~~lld--~~N~P~Lihc~rGkhRtg~lVgclR-klq~W~lssil~Ey~~f 187 (249)
T KOG1572|consen 138 KALKVLLD--KRNYPILIHCKRGKHRTGCLVGCLR-KLQNWSLSSILDEYLRF 187 (249)
T ss_pred HHHHHHhc--ccCCceEEecCCCCcchhhhHHHHH-HHhccchhHHHHHHHHh
Confidence 55555333 3568999999999999998777654 77899988877755443
No 38
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=97.91 E-value=2.7e-05 Score=77.78 Aligned_cols=69 Identities=16% Similarity=0.244 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHH----cCCeEEEEcCCCCchHHHHHHHHHHhh-----cCCCHHHHHHHHHHHcCccccChhhHHHHH
Q 006271 188 YDVFDYFEDVRE----QGGRVFVHCCQGVSRSTSLVIAYLMWR-----EGQSFEDAFQYVKAARGVTNPNMGFACQLL 256 (653)
Q Consensus 188 ~~av~fI~~~~~----~ggrVLVHC~aGiSRSatVViAYLM~~-----~g~SleeAl~~Vr~~RP~i~PN~gF~~QL~ 256 (653)
..+++|++.+.+ .+++|+|||..|.|||++++++.+|.. ...++.+++..||+.|+.+-.+..+...+.
T Consensus 153 ~~~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~i~~~~qy~f~~ 230 (235)
T PF00102_consen 153 ESFLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDILIEQLKKEGEVDVFEIVKKLRQQRPGAIQSPEQYRFCY 230 (235)
T ss_dssp HHHHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHHHHHHHHHSEECHHHHHHHHHTTSTTSSSSHHHHHHHH
T ss_pred chhhhhhhhccccccCCccceEeecccccccccccccchhhccccccccchhhHHHHHHHHhhCCCccCCHHHHHHHH
Confidence 445555555444 349999999999999999999987754 246999999999999999888876555543
No 39
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=97.72 E-value=0.00016 Score=77.08 Aligned_cols=51 Identities=12% Similarity=0.129 Sum_probs=41.4
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHhh-----cCCCHHHHHHHHHHHcCccccChhh
Q 006271 201 GGRVFVHCCQGVSRSTSLVIAYLMWR-----EGQSFEDAFQYVKAARGVTNPNMGF 251 (653)
Q Consensus 201 ggrVLVHC~aGiSRSatVViAYLM~~-----~g~SleeAl~~Vr~~RP~i~PN~gF 251 (653)
.++|+|||.+|+||||++++...+.. ...+..+++..+|+.|+..-.+..+
T Consensus 229 ~~PIvVHCsaGvGRTGtF~aid~~i~~~~~~~~v~v~~~V~~lR~qR~~~Vqt~~Q 284 (303)
T PHA02742 229 EPPILVHCSAGLDRAGAFCAIDICISKYNERAIIPLLSIVRDLRKQRHNCLSLPQQ 284 (303)
T ss_pred CCCeEEECCCCCchhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccccCCHHH
Confidence 37999999999999999998775542 2557889999999999987666543
No 40
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=97.70 E-value=7.1e-05 Score=71.87 Aligned_cols=59 Identities=17% Similarity=0.376 Sum_probs=43.8
Q ss_pred CCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCCCCchHHHHHHHHHHh
Q 006271 165 KGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMW 225 (653)
Q Consensus 165 ~~~i~yl~ipI~D~~~~dl~~~L~~av~fI~~~~~~ggrVLVHC~aGiSRSatVViAYLM~ 225 (653)
..++.|++||+.|...+. ...|++.++|+... ..+.-+.+||.+|.||+.+..+.|.|.
T Consensus 90 ~~g~~Y~Ripitd~~~P~-~~~iD~fi~~v~~~-p~~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 90 GNGLRYYRIPITDHQAPD-PEDIDAFINFVKSL-PKDTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp HTT-EEEEEEE-TTS----HHHHHHHHHHHHTS--TT-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred cCCceEEEEeCCCcCCCC-HHHHHHHHHHHHhC-CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999986544 47788889999888 668999999999999998888877664
No 41
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=97.64 E-value=0.00018 Score=77.49 Aligned_cols=52 Identities=13% Similarity=0.198 Sum_probs=42.3
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHh-----hcCCCHHHHHHHHHHHcCccccChhhHH
Q 006271 202 GRVFVHCCQGVSRSTSLVIAYLMW-----REGQSFEDAFQYVKAARGVTNPNMGFAC 253 (653)
Q Consensus 202 grVLVHC~aGiSRSatVViAYLM~-----~~g~SleeAl~~Vr~~RP~i~PN~gF~~ 253 (653)
++|+|||.+|+||||++|+...+. ....+..+++..+|..|+..-.+..+..
T Consensus 248 ~PIvVHCsaGvGRTGtfcaid~~l~~l~~~~~vdv~~~V~~lR~qR~~~Vqt~~QY~ 304 (323)
T PHA02746 248 GPIVVHCSAGIGRAGTFCAIDNALEQLEKEKEVCLGEIVLKIRKQRHSSVFLPEQYA 304 (323)
T ss_pred CCEEEEcCCCCCcchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhcccccCCCHHHHH
Confidence 799999999999999999875443 2467899999999999998767654433
No 42
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=97.59 E-value=0.00034 Score=74.62 Aligned_cols=51 Identities=14% Similarity=0.151 Sum_probs=41.7
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHh-----hcCCCHHHHHHHHHHHcCccccChhh
Q 006271 201 GGRVFVHCCQGVSRSTSLVIAYLMW-----REGQSFEDAFQYVKAARGVTNPNMGF 251 (653)
Q Consensus 201 ggrVLVHC~aGiSRSatVViAYLM~-----~~g~SleeAl~~Vr~~RP~i~PN~gF 251 (653)
.++|+|||.+|+||||++|+...+. ....++.+++..+|+.|+..-.+..+
T Consensus 221 ~~PIVVHCSaGvGRTGtFcaiDi~l~~~~~~~~vdi~~~V~~lR~qR~~~Vqt~~Q 276 (298)
T PHA02740 221 IAPIIIDCIDGISSSAVFCVFDICATEFDKTGMLSIANALKKVRQKKYGCMNCLDD 276 (298)
T ss_pred CCCEEEECCCCCchhHHHHHHHHHHHHHHhcCcccHHHHHHHHHhhCccccCCHHH
Confidence 4799999999999999999877554 34668999999999999987666543
No 43
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=97.59 E-value=0.00028 Score=75.66 Aligned_cols=54 Identities=15% Similarity=0.241 Sum_probs=43.8
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHh-----hcCCCHHHHHHHHHHHcCccccChhhHHHH
Q 006271 202 GRVFVHCCQGVSRSTSLVIAYLMW-----REGQSFEDAFQYVKAARGVTNPNMGFACQL 255 (653)
Q Consensus 202 grVLVHC~aGiSRSatVViAYLM~-----~~g~SleeAl~~Vr~~RP~i~PN~gF~~QL 255 (653)
++|+|||.+|+||||++|+..++. ....+..+++..+|..|+..-.+..+...+
T Consensus 230 ~PIvVHCsaGvGRtGtfcaidi~i~~l~~~~~v~v~~~V~~lR~qR~~~Vqt~~QY~F~ 288 (312)
T PHA02747 230 CPIVVHCSDGVGKTGIFCAVDICLNQLVKRKAICLAKTAEKIREQRHAGIMNFDDYLFI 288 (312)
T ss_pred CCEEEEecCCCcchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHhccccccCCHHHHHHH
Confidence 699999999999999999887543 246789999999999999877776544443
No 44
>PHA02738 hypothetical protein; Provisional
Probab=97.40 E-value=0.0007 Score=72.85 Aligned_cols=54 Identities=13% Similarity=0.065 Sum_probs=42.2
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHh-----hcCCCHHHHHHHHHHHcCccccChhhHHH
Q 006271 201 GGRVFVHCCQGVSRSTSLVIAYLMW-----REGQSFEDAFQYVKAARGVTNPNMGFACQ 254 (653)
Q Consensus 201 ggrVLVHC~aGiSRSatVViAYLM~-----~~g~SleeAl~~Vr~~RP~i~PN~gF~~Q 254 (653)
.++|+|||.+|+||||++++.-.+. ....++.+++..||+.|+..-.+..+...
T Consensus 227 ~~PIVVHCs~GiGRtGtFcaidi~i~~~~~~~~vdv~~~V~~lR~qR~~~vqt~~QY~F 285 (320)
T PHA02738 227 PPPIVVHCNAGLGRTPCYCVVDISISRFDACATVSIPSIVSSIRNQRYYSLFIPFQYFF 285 (320)
T ss_pred CCCeEEEcCCCCChhhhhhHHHHHHHHHHhcCCcCHHHHHHHHHhhhhhccCCHHHHHH
Confidence 3689999999999999988766433 23568999999999999987666544433
No 45
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=97.39 E-value=0.00023 Score=73.94 Aligned_cols=122 Identities=15% Similarity=0.147 Sum_probs=73.4
Q ss_pred CCeEECChhhhcCHH--HHHhCCCcEEEEcccCCC--cCccCCCc----EEEEEEccCCCCC-chHHHHHHHHHHHHHHH
Q 006271 128 DHIYLGSDAVAKNRG--ILRQNGITHVLNCVGFVC--PEYFKGDL----VYKTLWLQDSPSE-DITSILYDVFDYFEDVR 198 (653)
Q Consensus 128 p~LYLGs~~~a~d~e--~Lk~~GIt~VLNl~~e~~--p~~~~~~i----~yl~ipI~D~~~~-dl~~~L~~av~fI~~~~ 198 (653)
..+|.++.+...+.. .....+|..++++.++.. -....... ....+...+.... .-....+....++.-.+
T Consensus 53 ~~~~Rs~~p~~~~~~~~~~~~~~l~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~ 132 (249)
T COG2365 53 IIDYRSGQPVPVQPDPELLDALYLKTIINLRDESNTNVELYTDHLINWDKAAIIMFESYRSFPTREDAAERLVELLQLLA 132 (249)
T ss_pred eeEcCCCCcccccCCccccccccccccccccccchhhhhhhhhhhhhhccccchhhhhhccCccchhhHHHHHHHHHHHh
Confidence 356777766665444 777778888888754111 00111111 1111111111111 11122344555555555
Q ss_pred HcC-CeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHHcCccccCh
Q 006271 199 EQG-GRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNM 249 (653)
Q Consensus 199 ~~g-grVLVHC~aGiSRSatVViAYLM~~~g~SleeAl~~Vr~~RP~i~PN~ 249 (653)
..+ ++||+||.+|..|++.+++.|++...++.-..+-++++..++......
T Consensus 133 ~~e~~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~v~~dyl~~~~~~~~~~~ 184 (249)
T COG2365 133 DAENGPVLIHCTAGKDRTGLVAALYRKLVGGSDETVAADYLLTNRYGEPERR 184 (249)
T ss_pred hcccCCEEEecCCCCcchHHHHHHHHHHhCCchhHHHHHHHHcCCccchhhH
Confidence 554 999999999999999999999999977777788888887777654443
No 46
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=97.36 E-value=0.00035 Score=76.48 Aligned_cols=123 Identities=17% Similarity=0.202 Sum_probs=82.1
Q ss_pred CHHHHHhCC--CcEEEEcccCC----CcCccCCCcEEEEEEccCCC---CCchHHH-HHHHHHHHHHHHHcCCeEEEEcC
Q 006271 140 NRGILRQNG--ITHVLNCVGFV----CPEYFKGDLVYKTLWLQDSP---SEDITSI-LYDVFDYFEDVREQGGRVFVHCC 209 (653)
Q Consensus 140 d~e~Lk~~G--It~VLNl~~e~----~p~~~~~~i~yl~ipI~D~~---~~dl~~~-L~~av~fI~~~~~~ggrVLVHC~ 209 (653)
..+.|+.+| |.-+|+++... .+.....++.|+.+...-.. ....... ...+-.|+++....+.=|+|||.
T Consensus 53 l~~~l~~~~~~vgl~iDltnt~ryy~~~~~~~~g~~Y~K~~c~g~~~vp~~~~v~~fv~~v~~f~~~~~~~~~LI~vhct 132 (393)
T KOG2386|consen 53 LFELLKEHNYKVGLKIDLTNTLRYYDKPELEERGVKYLKRNCPGRGVVPRTELVDKFVKLVKGFVDDTKLDDELIGVHCT 132 (393)
T ss_pred HHHHHHhcCceEEEEEeccceeeeeccccccccceeEEEeccCCcccCCCccchHHHHHHHHHHHhcccCCCCEEEEeCC
Confidence 344444443 56677765321 12333456777776654322 2222233 34444566666777899999999
Q ss_pred CCCchHHHHHHHHHHhhcCCCHHHHHHHHHHHcCccccChhhHHHHHHHHHHh
Q 006271 210 QGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKRV 262 (653)
Q Consensus 210 aGiSRSatVViAYLM~~~g~SleeAl~~Vr~~RP~i~PN~gF~~QL~~~Ek~L 262 (653)
+|++|++=++++|||...+|+..+|++.+...|+-..=....+..|...+...
T Consensus 133 hG~NrtgyLI~~yL~~~~~~s~~~aik~f~~~r~~gi~k~dyi~~L~~~~~~~ 185 (393)
T KOG2386|consen 133 HGLNRTGYLICAYLADVGGYSSSEAIKRFADARPPGIEKQDYIDALYSRYHDI 185 (393)
T ss_pred CcccccceeeeeeeeeccCccHHHHHHHHHHhCCCccCchHHHHHHhhccccc
Confidence 99999999999999999999999999999999986544445555665444443
No 47
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=97.20 E-value=0.0011 Score=79.12 Aligned_cols=80 Identities=18% Similarity=0.249 Sum_probs=59.1
Q ss_pred ccCCCCCchHHHHHHHHHHHHHHHHc-CCeEEEEcCCCCchHHHHHHHHHHhh-----cCCCHHHHHHHHHHHcCccccC
Q 006271 175 LQDSPSEDITSILYDVFDYFEDVREQ-GGRVFVHCCQGVSRSTSLVIAYLMWR-----EGQSFEDAFQYVKAARGVTNPN 248 (653)
Q Consensus 175 I~D~~~~dl~~~L~~av~fI~~~~~~-ggrVLVHC~aGiSRSatVViAYLM~~-----~g~SleeAl~~Vr~~RP~i~PN 248 (653)
+.|++.++-...|-+-++.|+.+++. +-+|+|||-+|+|||++++++=+|.. .....-+.+..+|..|-.+-++
T Consensus 1036 WPDHg~P~D~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~e~~l~lle~Ne~vdi~divr~mR~QR~~mVQT 1115 (1144)
T KOG0792|consen 1036 WPDHGVPDDPNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILMETALCLLEHNEPVDILDIVRTMRDQRAMMVQT 1115 (1144)
T ss_pred cccCCCCCChHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhccc
Confidence 34666555556666666666666665 56999999999999999886654443 4667889999999999988788
Q ss_pred hhhHHH
Q 006271 249 MGFACQ 254 (653)
Q Consensus 249 ~gF~~Q 254 (653)
..+.+.
T Consensus 1116 ~~QYkF 1121 (1144)
T KOG0792|consen 1116 LSQYKF 1121 (1144)
T ss_pred hHHhhH
Confidence 665443
No 48
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=96.54 E-value=0.0033 Score=69.24 Aligned_cols=81 Identities=20% Similarity=0.343 Sum_probs=51.5
Q ss_pred EEEEEEccCCCCCchHHHHHHHHHHHHHHH------HcCCeEEEEcCCCCchHHHHHHH-HHHh---hc----CCCHHHH
Q 006271 169 VYKTLWLQDSPSEDITSILYDVFDYFEDVR------EQGGRVFVHCCQGVSRSTSLVIA-YLMW---RE----GQSFEDA 234 (653)
Q Consensus 169 ~yl~ipI~D~~~~dl~~~L~~av~fI~~~~------~~ggrVLVHC~aGiSRSatVViA-YLM~---~~----g~SleeA 234 (653)
.|+.+-+.|++.+.- -..++.|+++.- ..-|.|.|||.+||||++|+++- .||- .. .++....
T Consensus 416 ~yh~~tWPDHGvP~d---Pg~vLnFLe~V~~rq~~l~~AgpIvVHCSAGIGrTGTfiViD~lld~I~~~Gldc~iDi~kt 492 (600)
T KOG0790|consen 416 HYHYLTWPDHGVPSD---PGGVLNFLEEVNHRQESLMDAGPIVVHCSAGIGRTGTFIVIDMLLDQIREKGLDCDIDIQKT 492 (600)
T ss_pred hhheeecccCCCcCC---ccHHHHHHHHhhhhhccccccCcEEEEccCCcCCcceEEEhHHHHHHHHhcCCCCcccHHHH
Confidence 344445556543311 123455665432 23579999999999999997643 3332 22 4588999
Q ss_pred HHHHHHHcCccccChhhH
Q 006271 235 FQYVKAARGVTNPNMGFA 252 (653)
Q Consensus 235 l~~Vr~~RP~i~PN~gF~ 252 (653)
+++||..|....-...+.
T Consensus 493 IqmVRsqRSGmVQTEaQY 510 (600)
T KOG0790|consen 493 IQMVRSQRSGMVQTEAQY 510 (600)
T ss_pred HHHHHHHhcchhhhHHhH
Confidence 999999998654444433
No 49
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=96.51 E-value=0.0078 Score=62.76 Aligned_cols=77 Identities=17% Similarity=0.229 Sum_probs=47.4
Q ss_pred ccCCCCCchHHHHHHHHHHHHHHH---HcCCeEEEEcCCCCchHHHHHHHHHHh-hcCCC-------------HHHHHHH
Q 006271 175 LQDSPSEDITSILYDVFDYFEDVR---EQGGRVFVHCCQGVSRSTSLVIAYLMW-REGQS-------------FEDAFQY 237 (653)
Q Consensus 175 I~D~~~~dl~~~L~~av~fI~~~~---~~ggrVLVHC~aGiSRSatVViAYLM~-~~g~S-------------leeAl~~ 237 (653)
..|...+++ ....++++... -++++++|||.||+||+||+++.-.+. ...-+ ..+.+..
T Consensus 193 W~D~~~p~i----~sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~ll~~~~~~~~~t~~~~~t~D~if~iV~~ 268 (302)
T COG5599 193 WVDFNVPDI----RSLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDILLRMPNDTLNHTDTWEDTQDLIFQIVLS 268 (302)
T ss_pred ccccCCcCH----HHHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHHHHhccccccCCCchhhhhhhHHHHHHHH
Confidence 456666655 33455555544 256999999999999999998776443 32221 2345566
Q ss_pred HHHHcCccccChhhHHHH
Q 006271 238 VKAARGVTNPNMGFACQL 255 (653)
Q Consensus 238 Vr~~RP~i~PN~gF~~QL 255 (653)
+|+.|-...-|..+...|
T Consensus 269 LRsQRmkmVQn~~Qf~fl 286 (302)
T COG5599 269 LRSQRMKMVQNKTQFKFL 286 (302)
T ss_pred HHHHHHHHHHhHHHHHHH
Confidence 666666554554444443
No 50
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=96.26 E-value=0.013 Score=64.20 Aligned_cols=56 Identities=14% Similarity=0.197 Sum_probs=41.0
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHH-Hhh--c---CCCHHHHHHHHHHHcCccccChhhHHHH
Q 006271 200 QGGRVFVHCCQGVSRSTSLVIAYL-MWR--E---GQSFEDAFQYVKAARGVTNPNMGFACQL 255 (653)
Q Consensus 200 ~ggrVLVHC~aGiSRSatVViAYL-M~~--~---g~SleeAl~~Vr~~RP~i~PN~gF~~QL 255 (653)
..+++.|||.+|+||++|+++... |.. . .....+.+..+|..|+.+..+..+...+
T Consensus 298 ~~~P~vVhcsaG~gRtgt~v~~~~~~~~~~~~~~~~~~~~~~~~iR~qR~~~vqt~~Qy~f~ 359 (415)
T KOG0789|consen 298 KQEPIEVHCSAGAGRAGTLVLIEHALIELQGPEGEPPIDEILREIRYQRPGAVQSPLQYLFI 359 (415)
T ss_pred CCCCeEEECCCCCCccchHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhcccchhHHHHH
Confidence 458999999999999999996552 222 1 2358888889999999776665544333
No 51
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=95.19 E-value=0.07 Score=58.02 Aligned_cols=62 Identities=18% Similarity=0.225 Sum_probs=46.9
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHhh-cC----CCHHHHHHHHHHHcCccccChhhHHHHHHHHHHh
Q 006271 201 GGRVFVHCCQGVSRSTSLVIAYLMWR-EG----QSFEDAFQYVKAARGVTNPNMGFACQLLLCQKRV 262 (653)
Q Consensus 201 ggrVLVHC~aGiSRSatVViAYLM~~-~g----~SleeAl~~Vr~~RP~i~PN~gF~~QL~~~Ek~L 262 (653)
.+.++|||.+|++|++|+++.--+.+ .+ .+.-..+..+|..|+...++..+.-.|.++=...
T Consensus 287 ~~p~iVhCSAGVgRTGTFiald~LLqq~~~~~~vdi~~iv~~lR~~R~~mVqte~Qyvfl~~c~~~~ 353 (374)
T KOG0791|consen 287 KGPTIVHCSAGVGRTGTFIALDRLLQQIDSEETVDIFGVVLELRSARMLMVQTEDQYVFLHQCVLES 353 (374)
T ss_pred CCceeEEeecccccccchHhHHHHHHHhcccccccHHHHHHHhhhccccccchHHHHHHHHHHHHHH
Confidence 68999999999999999987764433 22 2455667777888898889988877777665443
No 52
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.48 E-value=0.12 Score=61.47 Aligned_cols=34 Identities=15% Similarity=0.412 Sum_probs=30.4
Q ss_pred CCCcccccCCCCeEEEecCCeEEEEeCCCCChHH
Q 006271 295 NYPVAQGFDTRGAFIVLVPSAIYVWIGKNCSVMM 328 (653)
Q Consensus 295 v~~~~sSLnS~d~FILd~~~~IYVW~Gk~s~~~e 328 (653)
+.++...|++++||+|++|.+||+|.|+.++...
T Consensus 881 VraS~e~l~negiYll~nG~~~ylwvg~sv~~~l 914 (1007)
T KOG1984|consen 881 VRASSEFLSNEGIYLLDNGQKIYLWVGESVDPDL 914 (1007)
T ss_pred eecchhhccCCceEEEecCcEEEEEecCCCCHHH
Confidence 4677789999999999999999999999998744
No 53
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=94.39 E-value=0.16 Score=59.12 Aligned_cols=62 Identities=15% Similarity=0.323 Sum_probs=44.7
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHh----h--cCCCHHHHHHHHHHHcCcc-ccChhhHHHHHHHHHHh
Q 006271 201 GGRVFVHCCQGVSRSTSLVIAYLMW----R--EGQSFEDAFQYVKAARGVT-NPNMGFACQLLLCQKRV 262 (653)
Q Consensus 201 ggrVLVHC~aGiSRSatVViAYLM~----~--~g~SleeAl~~Vr~~RP~i-~PN~gF~~QL~~~Ek~L 262 (653)
...|+|||..|-||+++-|+-=|+. + ..++....++++|..||.+ .-...|...|...-+++
T Consensus 927 ScpIiVH~sdGaGRTG~YiliDmvl~Rm~kGakeIDIaATlEHlRDQR~GmVaTkdQFef~l~aVAeEV 995 (1004)
T KOG0793|consen 927 SCPIIVHCSDGAGRTGTYILIDMVLNRMAKGAKEIDIAATLEHLRDQRPGMVATKDQFEFALTAVAEEV 995 (1004)
T ss_pred CCceEEEccCCCCccceeeeHHHHHHHHhccchhhhHHHHHHHHhhcCCcceeehhhhHHHHHHHHHHH
Confidence 4789999999999999865443322 1 2457788899999999964 55566776666554443
No 54
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=92.92 E-value=0.22 Score=47.88 Aligned_cols=102 Identities=22% Similarity=0.277 Sum_probs=54.2
Q ss_pred cccCCeEECChhhhcCHHHHHhCCCcEEEEcccCCCcCccCCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHHHc---C
Q 006271 125 RIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCPEYFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQ---G 201 (653)
Q Consensus 125 ~I~p~LYLGs~~~a~d~e~Lk~~GIt~VLNl~~e~~p~~~~~~i~yl~ipI~D~~~~dl~~~L~~av~fI~~~~~~---g 201 (653)
-|.+.||.+..... .++..=+|-+++-+ .+.|..+ -.|.+.-++ .++.+-+..+++.++. .
T Consensus 3 ~i~drLyf~~~~~~-----p~~~~~~~yF~iD~---------~l~Y~~F-~~DFGPlnL-~~lyrfc~~l~~~L~~~~~~ 66 (141)
T PF14671_consen 3 IIPDRLYFASLRNK-----PKSTPNTHYFSIDD---------ELVYENF-YADFGPLNL-AQLYRFCCKLNKKLKSPELK 66 (141)
T ss_dssp -SSSSEEEEE-SS---------BTTEEEEE-TT---------TS----S-SS------H-HHHHHHHHHHHHHHH-GGGT
T ss_pred CCCCcEEEEEeCCC-----CCCCCCcEEEEeCC---------eEEEecc-cCcCCCccH-HHHHHHHHHHHHHHcCHHhc
Confidence 36678888875542 22223455555421 1222222 246666666 4556666666666654 6
Q ss_pred CeEEEEcCCCCc--h--HHHHHHHHHHhhcCCCHHHHHHHHHHHc
Q 006271 202 GRVFVHCCQGVS--R--STSLVIAYLMWREGQSFEDAFQYVKAAR 242 (653)
Q Consensus 202 grVLVHC~aGiS--R--SatVViAYLM~~~g~SleeAl~~Vr~~R 242 (653)
++.+|||...-. | ++.++.||+|...||+.++|++.+...-
T Consensus 67 ~k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~spe~A~~~l~~~~ 111 (141)
T PF14671_consen 67 KKKIVHYTSSDPKKRANAAFLIGAYAVIYLGMSPEEAYKPLASIQ 111 (141)
T ss_dssp TSEEEEEE-S-HHHHHHHHHHHHHHHHHTS---HHHHHHHHTTTT
T ss_pred CCeEEEECCCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcC
Confidence 888999886654 3 4778899999999999999999987663
No 55
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.17 E-value=0.33 Score=55.71 Aligned_cols=40 Identities=30% Similarity=0.559 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHcCCeEEEEcCCCCchHHHHH-HHHHHh
Q 006271 186 ILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLV-IAYLMW 225 (653)
Q Consensus 186 ~L~~av~fI~~~~~~ggrVLVHC~aGiSRSatVV-iAYLM~ 225 (653)
.|..|+...++.-..+..|||||..|..|++-++ +|.||.
T Consensus 359 lLaga~~Ia~kVe~~~~sVlVHCSDGWDRT~QlvsLA~LlL 399 (717)
T KOG4471|consen 359 LLAGAVRIADKVESESRSVLVHCSDGWDRTAQLVSLAMLLL 399 (717)
T ss_pred HHHHHHHHHHHHhcCCceEEEEcCCCccchHHHHHHHHHHh
Confidence 3555666667777788999999999999999887 455554
No 56
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=89.43 E-value=0.45 Score=58.13 Aligned_cols=57 Identities=18% Similarity=0.362 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHc----CCeEEEEcCCCCchHHHHHHH-----HHHhhcCCCHHHHHHHHHHHcCc
Q 006271 188 YDVFDYFEDVREQ----GGRVFVHCCQGVSRSTSLVIA-----YLMWREGQSFEDAFQYVKAARGV 244 (653)
Q Consensus 188 ~~av~fI~~~~~~----ggrVLVHC~aGiSRSatVViA-----YLM~~~g~SleeAl~~Vr~~RP~ 244 (653)
-..+.|+.+...- .|+|+|||.+|+||+|+.++- .++.....+...-+..+|..|..
T Consensus 713 t~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~fi~iDaml~~~~~e~~vdiy~~v~~lR~QR~~ 778 (1087)
T KOG4228|consen 713 TGLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCFIVIDAMLDRLECEGKVDIYGHVKTLRRQRNN 778 (1087)
T ss_pred hHHHHHHHHhccCCCcCCCCEEEECCCCCCCcceEEEeHHHHHHHHhhCccceechhHHHHhcccc
Confidence 3456777776653 399999999999999996532 22222344555556666666654
No 57
>PTZ00395 Sec24-related protein; Provisional
Probab=89.41 E-value=1.6 Score=54.60 Aligned_cols=32 Identities=13% Similarity=0.285 Sum_probs=29.0
Q ss_pred CCcccccCCCCeEEEecCCeEEEEeCCCCChH
Q 006271 296 YPVAQGFDTRGAFIVLVPSAIYVWIGKNCSVM 327 (653)
Q Consensus 296 ~~~~sSLnS~d~FILd~~~~IYVW~Gk~s~~~ 327 (653)
.++...|.++++|||+.|..||+|+|+.++..
T Consensus 1435 rLS~ErLesdGIYLLDNGe~IyLWVG~~V~Pq 1466 (1560)
T PTZ00395 1435 PSSAEKIYSNGIYLLDACTHFYLYFGFHSDAN 1466 (1560)
T ss_pred cchHHHhcCCcEEEEECCCEEEEEECCCCCHH
Confidence 56778899999999999999999999999863
No 58
>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
Probab=88.45 E-value=1.2 Score=52.78 Aligned_cols=31 Identities=16% Similarity=0.510 Sum_probs=27.8
Q ss_pred CcccccCCCCeEEEecCCeEEEEeCCCCChH
Q 006271 297 PVAQGFDTRGAFIVLVPSAIYVWIGKNCSVM 327 (653)
Q Consensus 297 ~~~sSLnS~d~FILd~~~~IYVW~Gk~s~~~ 327 (653)
.+.+.|+++++|+||++.+||+|.|+.+...
T Consensus 738 aT~s~le~~GlYLidtg~~iflw~g~d~~p~ 768 (861)
T COG5028 738 ATSSLLESGGLYLIDTGQKIFLWFGKDAVPS 768 (861)
T ss_pred hhHHHHhcCCeEEEEcCCEEEEEecCCCCHH
Confidence 4557789999999999999999999999973
No 59
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=81.54 E-value=2.3 Score=52.29 Aligned_cols=45 Identities=18% Similarity=0.330 Sum_probs=34.0
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHhh-----cCCCHHHHHHHHHHHcCcc
Q 006271 201 GGRVFVHCCQGVSRSTSLVIAYLMWR-----EGQSFEDAFQYVKAARGVT 245 (653)
Q Consensus 201 ggrVLVHC~aGiSRSatVViAYLM~~-----~g~SleeAl~~Vr~~RP~i 245 (653)
.+++.|||..|.+|+++++++-++.. .-++.=+|++.+|..||..
T Consensus 1018 ~~P~~Vhc~nG~~rsg~f~ai~~l~e~~~~e~~vDVfq~vk~Lr~~rp~m 1067 (1087)
T KOG4228|consen 1018 DGPIIVHCLNGVGRTGTFCAISILLERMRKEGVVDVFQTVKTLRFQRPGM 1067 (1087)
T ss_pred CCCEEEEEcCCCcceeehHHHHHHHHHHhhcCceeeehhhhhhhhcCccc
Confidence 58999999999999999887765443 1335556777777777764
No 60
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=77.47 E-value=4.6 Score=44.37 Aligned_cols=24 Identities=33% Similarity=0.757 Sum_probs=17.9
Q ss_pred HHHcCCeEEEEcCCCCchHHHHHH
Q 006271 197 VREQGGRVFVHCCQGVSRSTSLVI 220 (653)
Q Consensus 197 ~~~~ggrVLVHC~aGiSRSatVVi 220 (653)
...+|..|||||..|..|++-|+.
T Consensus 227 l~~~~~~Vlvh~~dGwDrt~q~~s 250 (353)
T PF06602_consen 227 LHDEGSSVLVHCSDGWDRTSQLSS 250 (353)
T ss_dssp HHTT--EEEEECTTSSSHHHHHHH
T ss_pred hhccCceEEEEcCCCCcccHHHHH
Confidence 336889999999999999966553
No 61
>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]
Probab=73.07 E-value=10 Score=44.10 Aligned_cols=35 Identities=26% Similarity=0.505 Sum_probs=25.4
Q ss_pred HHHHHHHH-cCCeEEEEcCCCCchHHHHH-HHHHHhh
Q 006271 192 DYFEDVRE-QGGRVFVHCCQGVSRSTSLV-IAYLMWR 226 (653)
Q Consensus 192 ~fI~~~~~-~ggrVLVHC~aGiSRSatVV-iAYLM~~ 226 (653)
.+|.+++. +|..|||||..|..|+..|+ +|=||..
T Consensus 334 ~~ia~~l~~~~~sVlvhcsdGwDrT~qV~SLaQllLD 370 (573)
T KOG1089|consen 334 AEIAKCLSSEGASVLVHCSDGWDRTCQVSSLAQLLLD 370 (573)
T ss_pred HHHHHHHHhCCCeEEEEccCCcchhHHHHHHHHHHhC
Confidence 34445555 66999999999999997776 4445543
No 62
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.10 E-value=4.7 Score=48.32 Aligned_cols=31 Identities=19% Similarity=0.550 Sum_probs=27.9
Q ss_pred CCcccccCCCCeEEEecCCeEEEEeCCCCCh
Q 006271 296 YPVAQGFDTRGAFIVLVPSAIYVWIGKNCSV 326 (653)
Q Consensus 296 ~~~~sSLnS~d~FILd~~~~IYVW~Gk~s~~ 326 (653)
......|.+++.|++|++..+|+|.|+.|..
T Consensus 764 ~ltae~l~~~GlyL~D~g~~lfl~vg~~a~P 794 (887)
T KOG1985|consen 764 NLTAELLSRRGLYLMDTGTTLFLWVGSNADP 794 (887)
T ss_pred chHHHHhccCceEEEecCcEEEEEEcCCCCc
Confidence 3456788999999999999999999999986
No 63
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=69.78 E-value=13 Score=32.54 Aligned_cols=29 Identities=31% Similarity=0.506 Sum_probs=19.3
Q ss_pred HcCCeEEEEcCCCCchHHHHHHHHHHhhcCCC
Q 006271 199 EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (653)
Q Consensus 199 ~~ggrVLVHC~aGiSRSatVViAYLM~~~g~S 230 (653)
..+.+|+|+|..| .||... +.+| ...|.+
T Consensus 59 ~~~~~ivvyC~~G-~rs~~a-~~~L-~~~G~~ 87 (101)
T cd01518 59 LKGKKVLMYCTGG-IRCEKA-SAYL-KERGFK 87 (101)
T ss_pred cCCCEEEEECCCc-hhHHHH-HHHH-HHhCCc
Confidence 4668999999998 488643 3344 444653
No 64
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=62.81 E-value=16 Score=31.86 Aligned_cols=70 Identities=20% Similarity=0.174 Sum_probs=39.1
Q ss_pred HHHHhCCCcEEEEcccCCCcCccC-CCcE-EEEEEccCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCCCCchHHHHH
Q 006271 142 GILRQNGITHVLNCVGFVCPEYFK-GDLV-YKTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLV 219 (653)
Q Consensus 142 e~Lk~~GIt~VLNl~~e~~p~~~~-~~i~-yl~ipI~D~~~~dl~~~L~~av~fI~~~~~~ggrVLVHC~aGiSRSatVV 219 (653)
..+...+-..||++... .++.. .-.. ..++|+.+...... ... ...+++|+|+|..|. || ..+
T Consensus 13 ~~~~~~~~~~liDvR~~--~e~~~~~i~~~~~~ip~~~~~~~~~---------~~~--~~~~~~ivv~C~~G~-rS-~~a 77 (110)
T COG0607 13 ALLLAGEDAVLLDVREP--EEYERGHIPGAAINIPLSELKAAEN---------LLE--LPDDDPIVVYCASGV-RS-AAA 77 (110)
T ss_pred HHhhccCCCEEEeccCh--hHhhhcCCCcceeeeecccchhhhc---------ccc--cCCCCeEEEEeCCCC-Ch-HHH
Confidence 33445556788887543 22221 1223 56777766433210 000 556799999999997 77 445
Q ss_pred HHHHHhh
Q 006271 220 IAYLMWR 226 (653)
Q Consensus 220 iAYLM~~ 226 (653)
+.+|...
T Consensus 78 a~~L~~~ 84 (110)
T COG0607 78 AAALKLA 84 (110)
T ss_pred HHHHHHc
Confidence 5555443
No 65
>PLN00162 transport protein sec23; Provisional
Probab=62.64 E-value=16 Score=44.28 Aligned_cols=70 Identities=7% Similarity=0.038 Sum_probs=46.7
Q ss_pred CCCcccccCCCCeEEEecCCeEEEEeCCCCC-----------hHH-----HHHHHHHHHHHHHHhhcCCcEEEcCCCCCh
Q 006271 295 NYPVAQGFDTRGAFIVLVPSAIYVWIGKNCS-----------VMM-----SNRAREAANQVIRYEKAQGQITSIKEGEEP 358 (653)
Q Consensus 295 v~~~~sSLnS~d~FILd~~~~IYVW~Gk~s~-----------~~e-----r~~A~~~A~~I~~~e~~~~~I~vI~EG~Ep 358 (653)
+.....+|.+.++|+||++..|+||+|.... ..+ .+..++-|+.|.+..-+..+++++++|.-.
T Consensus 635 v~Ld~~si~~d~ilLLD~~f~vvi~~G~~ia~w~~~~~~~~~~~~~~~~~l~~p~~~a~~~~~~Rfp~Pr~i~~~~~~Sq 714 (761)
T PLN00162 635 VLLDVASIAADRILLLDSYFSVVIFHGSTIAQWRKAGYHNQPEHEAFAQLLEAPQADAQAIIKERFPVPRLVVCDQHGSQ 714 (761)
T ss_pred eecchhhccCCceEEEeCCCEEEEEecCcccchhhcCCCCCcchhhHHHHHHhHHHHHHHHHhcCCCCCeEEEeCCCCcH
Confidence 3556788999999999999999999994221 111 122334455555544455578899999876
Q ss_pred HHHHHH
Q 006271 359 LEFWDA 364 (653)
Q Consensus 359 ~~FW~a 364 (653)
.-|.-+
T Consensus 715 aRfl~~ 720 (761)
T PLN00162 715 ARFLLA 720 (761)
T ss_pred HHHHHH
Confidence 666443
No 66
>PRK01415 hypothetical protein; Validated
Probab=54.87 E-value=29 Score=36.53 Aligned_cols=29 Identities=21% Similarity=0.362 Sum_probs=19.9
Q ss_pred HcCCeEEEEcCCCCchHHHHHHHHHHhhcCCC
Q 006271 199 EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (653)
Q Consensus 199 ~~ggrVLVHC~aGiSRSatVViAYLM~~~g~S 230 (653)
.++++|+++|+.|+ || ..++++|.. .|..
T Consensus 169 ~k~k~Iv~yCtgGi-Rs-~kAa~~L~~-~Gf~ 197 (247)
T PRK01415 169 LKGKKIAMVCTGGI-RC-EKSTSLLKS-IGYD 197 (247)
T ss_pred cCCCeEEEECCCCh-HH-HHHHHHHHH-cCCC
Confidence 46789999999996 77 445566543 3543
No 67
>PLN02160 thiosulfate sulfurtransferase
Probab=52.73 E-value=19 Score=33.89 Aligned_cols=30 Identities=20% Similarity=0.294 Sum_probs=19.7
Q ss_pred HHcCCeEEEEcCCCCchHHHHHHHHHHhhcCCC
Q 006271 198 REQGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (653)
Q Consensus 198 ~~~ggrVLVHC~aGiSRSatVViAYLM~~~g~S 230 (653)
+..+++|+|||..|. ||...+ .++...|++
T Consensus 78 ~~~~~~IivyC~sG~-RS~~Aa--~~L~~~G~~ 107 (136)
T PLN02160 78 LNPADDILVGCQSGA-RSLKAT--TELVAAGYK 107 (136)
T ss_pred cCCCCcEEEECCCcH-HHHHHH--HHHHHcCCC
Confidence 356789999999994 886543 233444554
No 68
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=51.31 E-value=28 Score=30.90 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=17.9
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHhhcCC
Q 006271 200 QGGRVFVHCCQGVSRSTSLVIAYLMWREGQ 229 (653)
Q Consensus 200 ~ggrVLVHC~aGiSRSatVViAYLM~~~g~ 229 (653)
.+.+|+|||..|. ||.. ++.. ++..|+
T Consensus 65 ~~~~ivv~C~~G~-rs~~-a~~~-L~~~G~ 91 (109)
T cd01533 65 PRTPIVVNCAGRT-RSII-GAQS-LINAGL 91 (109)
T ss_pred CCCeEEEECCCCc-hHHH-HHHH-HHHCCC
Confidence 4579999999997 7733 3333 344565
No 69
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=42.93 E-value=84 Score=27.07 Aligned_cols=82 Identities=15% Similarity=0.182 Sum_probs=41.1
Q ss_pred hCCCcEEEEcccCCCcCccCCCc-EEEEEEccCC---CCCchHHHHHHHHHHHHHHHHcCCeEEEEcCCCCchHHHHHH-
Q 006271 146 QNGITHVLNCVGFVCPEYFKGDL-VYKTLWLQDS---PSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVI- 220 (653)
Q Consensus 146 ~~GIt~VLNl~~e~~p~~~~~~i-~yl~ipI~D~---~~~dl~~~L~~av~fI~~~~~~ggrVLVHC~aGiSRSatVVi- 220 (653)
..+=..||+|.... .+....+ .-.++|+... ........+............++..|+|+|..|. |+...+.
T Consensus 10 ~~~~~~liD~R~~~--~~~~~hI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~~-~~~~~~~~ 86 (113)
T PF00581_consen 10 ENESVLLIDVRSPE--EYERGHIPGAVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSGW-RSGSAAAA 86 (113)
T ss_dssp TTTTEEEEEESSHH--HHHHSBETTEEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSSC-HHHHHHHH
T ss_pred hCCCeEEEEeCCHH--HHHcCCCCCCccccccccccccccccccccccccccccccccccccceeeeeccc-ccchhHHH
Confidence 44567888975321 1211111 2367777432 2222223344443334444456789999997776 4433333
Q ss_pred --HHHHhhcCCC
Q 006271 221 --AYLMWREGQS 230 (653)
Q Consensus 221 --AYLM~~~g~S 230 (653)
+|++...|+.
T Consensus 87 ~~~~~l~~~g~~ 98 (113)
T PF00581_consen 87 RVAWILKKLGFK 98 (113)
T ss_dssp HHHHHHHHTTTS
T ss_pred HHHHHHHHcCCC
Confidence 3445555553
No 70
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=42.64 E-value=38 Score=30.44 Aligned_cols=30 Identities=17% Similarity=-0.040 Sum_probs=19.9
Q ss_pred HcCCeEEEEcCCCCchHHHHHHHHHHhhcCCC
Q 006271 199 EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (653)
Q Consensus 199 ~~ggrVLVHC~aGiSRSatVViAYLM~~~g~S 230 (653)
..+..|+|+|..| ++.++.++.+| ...|+.
T Consensus 77 ~~~~~vv~~c~~g-~~~a~~~~~~l-~~~G~~ 106 (122)
T cd01448 77 SNDDTVVVYDDGG-GFFAARAWWTL-RYFGHE 106 (122)
T ss_pred CCCCEEEEECCCC-CccHHHHHHHH-HHcCCC
Confidence 3578999999998 55555555444 444654
No 71
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=42.00 E-value=31 Score=37.02 Aligned_cols=18 Identities=22% Similarity=0.471 Sum_probs=15.8
Q ss_pred eEEEEcCCCCchHHHHHH
Q 006271 203 RVFVHCCQGVSRSTSLVI 220 (653)
Q Consensus 203 rVLVHC~aGiSRSatVVi 220 (653)
.|-|=|++|..||++++=
T Consensus 244 tIaiGCTGG~HRSV~iae 261 (284)
T PF03668_consen 244 TIAIGCTGGQHRSVAIAE 261 (284)
T ss_pred EEEEEcCCCcCcHHHHHH
Confidence 688999999999998773
No 72
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=41.86 E-value=40 Score=36.51 Aligned_cols=28 Identities=25% Similarity=0.495 Sum_probs=19.7
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHhhcCCC
Q 006271 200 QGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (653)
Q Consensus 200 ~ggrVLVHC~aGiSRSatVViAYLM~~~g~S 230 (653)
++++|+|||..|+ ||. .+++||.. .|.+
T Consensus 170 kdk~IvvyC~~G~-Rs~-~aa~~L~~-~Gf~ 197 (314)
T PRK00142 170 KDKKVVMYCTGGI-RCE-KASAWMKH-EGFK 197 (314)
T ss_pred CcCeEEEECCCCc-HHH-HHHHHHHH-cCCC
Confidence 5689999999996 774 45566554 4653
No 73
>smart00400 ZnF_CHCC zinc finger.
Probab=39.76 E-value=28 Score=27.65 Aligned_cols=32 Identities=31% Similarity=0.554 Sum_probs=24.2
Q ss_pred EEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHH
Q 006271 205 FVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYV 238 (653)
Q Consensus 205 LVHC~aGiSRSatVViAYLM~~~g~SleeAl~~V 238 (653)
..||.+ -++.+- +|.++|+.+|+++.+|++.+
T Consensus 23 ~~~Cf~-cg~gGd-~i~fv~~~~~~sf~eA~~~L 54 (55)
T smart00400 23 FFHCFG-CGAGGN-VISFLMKYDKLSFVEAVKKL 54 (55)
T ss_pred EEEEeC-CCCCCC-HHHHHHHHHCcCHHHHHHHh
Confidence 478874 345544 57888899999999999876
No 74
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=39.04 E-value=3.2e+02 Score=30.17 Aligned_cols=64 Identities=13% Similarity=0.205 Sum_probs=37.2
Q ss_pred cCCCCeEEEecCC------eEEEEeCCCCChHHHHHHHHHHHHHHHHhhcCCcEEEcCCCC------ChHHHHHHhcC
Q 006271 302 FDTRGAFIVLVPS------AIYVWIGKNCSVMMSNRAREAANQVIRYEKAQGQITSIKEGE------EPLEFWDALVR 367 (653)
Q Consensus 302 LnS~d~FILd~~~------~IYVW~Gk~s~~~er~~A~~~A~~I~~~e~~~~~I~vI~EG~------Ep~~FW~aLGg 367 (653)
|...+.-|||... ..|.+.|- .....+...-.++..+.+... ...|.+-+|+. =|..||+.+-.
T Consensus 161 L~~~~~~vlDlE~~aehrGS~fG~~~~-~qpsQ~~Fe~~l~~~l~~~~~-~~~i~vE~Es~~IG~~~lP~~l~~~m~~ 236 (345)
T PRK11784 161 LANAGAQVLDLEGLANHRGSSFGRLGG-PQPSQKDFENLLAEALLKLDP-ARPIVVEDESRRIGRVHLPEALYEAMQQ 236 (345)
T ss_pred HHhcCCeEEECCchhhhccccccCCCC-CCcchHHHHHHHHHHHHcCCC-CCeEEEEeccccccCccCCHHHHHHHhh
Confidence 3344556777542 46766666 233344555556666655433 34566666664 48899999853
No 75
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=37.40 E-value=49 Score=26.46 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=20.6
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHH
Q 006271 216 TSLVIAYLMWREGQSFEDAFQYVKAA 241 (653)
Q Consensus 216 atVViAYLM~~~g~SleeAl~~Vr~~ 241 (653)
..-+.+.||..+|++.++|+++++..
T Consensus 15 I~~AkgiLm~~~g~~e~~A~~~Lr~~ 40 (56)
T PF03861_consen 15 IEQAKGILMARYGLSEDEAYRLLRRQ 40 (56)
T ss_dssp HHHHHHHHHHHHT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 45577889999999999999999875
No 76
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=37.26 E-value=67 Score=27.92 Aligned_cols=28 Identities=25% Similarity=0.526 Sum_probs=18.3
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHhhcCCC
Q 006271 200 QGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (653)
Q Consensus 200 ~ggrVLVHC~aGiSRSatVViAYLM~~~g~S 230 (653)
++.+|+|+|..| .||... +.+|.+ .|.+
T Consensus 57 ~~~~vv~~c~~g-~rs~~~-~~~l~~-~G~~ 84 (101)
T cd01528 57 PDKDIVVLCHHG-GRSMQV-AQWLLR-QGFE 84 (101)
T ss_pred CCCeEEEEeCCC-chHHHH-HHHHHH-cCCc
Confidence 478999999998 477443 334443 4653
No 77
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=36.34 E-value=41 Score=29.16 Aligned_cols=28 Identities=25% Similarity=0.235 Sum_probs=18.5
Q ss_pred HcCCeEEEEcCCCCchHHHHHHHHHHhhcCC
Q 006271 199 EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQ 229 (653)
Q Consensus 199 ~~ggrVLVHC~aGiSRSatVViAYLM~~~g~ 229 (653)
..+++|+|+|..|. ||.. ++..| ...|+
T Consensus 59 ~~~~~ivv~C~~G~-rs~~-aa~~L-~~~G~ 86 (100)
T cd01523 59 PDDQEVTVICAKEG-SSQF-VAELL-AERGY 86 (100)
T ss_pred CCCCeEEEEcCCCC-cHHH-HHHHH-HHcCc
Confidence 45689999999995 7743 33333 44465
No 78
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=36.28 E-value=38 Score=36.30 Aligned_cols=36 Identities=22% Similarity=0.312 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHH----HcC---CeEEEEcCCCCchHHHHHH
Q 006271 185 SILYDVFDYFEDVR----EQG---GRVFVHCCQGVSRSTSLVI 220 (653)
Q Consensus 185 ~~L~~av~fI~~~~----~~g---grVLVHC~aGiSRSatVVi 220 (653)
..++.+.++++.++ ++| -.|-|=|++|..||++++-
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~igCtGG~HRSV~~~e 264 (288)
T PRK05416 222 EFLDKIRDLLEFWLPGYEREGKSYLTIAIGCTGGQHRSVAIAE 264 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEEecCCCcccHHHHHH
Confidence 44555555555433 333 2488899999999988863
No 79
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=34.57 E-value=63 Score=31.47 Aligned_cols=30 Identities=17% Similarity=0.073 Sum_probs=21.3
Q ss_pred HcCCeEEEEcCCCCchHHHHHHHHHHhhcCCC
Q 006271 199 EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (653)
Q Consensus 199 ~~ggrVLVHC~aGiSRSatVViAYLM~~~g~S 230 (653)
.++.+|+|+|..|..||.. ++++++..|.+
T Consensus 114 ~~d~~IVvYC~~G~~~S~~--aa~~L~~~G~~ 143 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWN--AAKRALAYGYS 143 (162)
T ss_pred CCCCEEEEEECCCCHHHHH--HHHHHHhcCCc
Confidence 3678999999998877765 45555555653
No 80
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=34.27 E-value=79 Score=31.98 Aligned_cols=38 Identities=8% Similarity=0.108 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEEEEcCCCCchHHHHHHHHH
Q 006271 183 ITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYL 223 (653)
Q Consensus 183 l~~~L~~av~fI~~~~~~ggrVLVHC~aGiSRSatVViAYL 223 (653)
+.+.+.++++.|.+++.++++|+|. |.|+|++++..+-
T Consensus 23 ~~~~i~~a~~~l~~~l~~~~rI~~~---G~GgSa~~A~~~a 60 (196)
T PRK10886 23 LPDAISRAAMTLVQSLLNGNKILCC---GNGTSAANAQHFA 60 (196)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEEEE---ECcHHHHHHHHHH
Confidence 3456788888999999999999987 8888977665443
No 81
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=33.67 E-value=68 Score=29.50 Aligned_cols=30 Identities=33% Similarity=0.534 Sum_probs=20.4
Q ss_pred HHcCCeEEEEcCCCCchHHHHHHHHHHhhcCC
Q 006271 198 REQGGRVFVHCCQGVSRSTSLVIAYLMWREGQ 229 (653)
Q Consensus 198 ~~~ggrVLVHC~aGiSRSatVViAYLM~~~g~ 229 (653)
+.++.+|+|+|..|-.||..+ +++++..|.
T Consensus 83 i~~~~~vvvyC~~~G~rs~~a--~~~L~~~G~ 112 (128)
T cd01520 83 LERDPKLLIYCARGGMRSQSL--AWLLESLGI 112 (128)
T ss_pred cCCCCeEEEEeCCCCccHHHH--HHHHHHcCC
Confidence 446789999998544577543 366666675
No 82
>PRK05320 rhodanese superfamily protein; Provisional
Probab=32.49 E-value=74 Score=33.47 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=19.0
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHhhcCC
Q 006271 200 QGGRVFVHCCQGVSRSTSLVIAYLMWREGQ 229 (653)
Q Consensus 200 ~ggrVLVHC~aGiSRSatVViAYLM~~~g~ 229 (653)
++++|+++|+.|+ ||. .++++|.. .|.
T Consensus 174 kdk~IvvyC~~G~-Rs~-~Aa~~L~~-~Gf 200 (257)
T PRK05320 174 AGKTVVSFCTGGI-RCE-KAAIHMQE-VGI 200 (257)
T ss_pred CCCeEEEECCCCH-HHH-HHHHHHHH-cCC
Confidence 5789999999996 774 45566643 354
No 83
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=31.68 E-value=57 Score=31.16 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHcCCeEEEEcCC
Q 006271 186 ILYDVFDYFEDVREQGGRVFVHCCQ 210 (653)
Q Consensus 186 ~L~~av~fI~~~~~~ggrVLVHC~a 210 (653)
.+.-+++.++++.++|.+|+|+|..
T Consensus 14 ~~~~~c~L~~ka~~~g~rv~I~~~d 38 (142)
T PRK05728 14 LEALLCELAEKALRAGWRVLVQCED 38 (142)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4567899999999999999999953
No 84
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=30.03 E-value=72 Score=28.91 Aligned_cols=19 Identities=26% Similarity=0.427 Sum_probs=14.9
Q ss_pred HcCCeEEEEcCCCCchHHHH
Q 006271 199 EQGGRVFVHCCQGVSRSTSL 218 (653)
Q Consensus 199 ~~ggrVLVHC~aGiSRSatV 218 (653)
..+.+|+|+|..|. ||..+
T Consensus 62 ~~~~~ivv~C~~G~-rs~~a 80 (117)
T cd01522 62 GKDRPVLLLCRSGN-RSIAA 80 (117)
T ss_pred CCCCeEEEEcCCCc-cHHHH
Confidence 46789999999984 77654
No 85
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=29.98 E-value=72 Score=27.45 Aligned_cols=29 Identities=14% Similarity=-0.020 Sum_probs=17.9
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHhhcCC
Q 006271 200 QGGRVFVHCCQGVSRSTSLVIAYLMWREGQ 229 (653)
Q Consensus 200 ~ggrVLVHC~aGiSRSatVViAYLM~~~g~ 229 (653)
...+|+|+|..|...++..++..| +..|.
T Consensus 49 ~~~~ivl~c~~G~~~~s~~aa~~L-~~~G~ 77 (92)
T cd01532 49 RDTPIVVYGEGGGEDLAPRAARRL-SELGY 77 (92)
T ss_pred CCCeEEEEeCCCCchHHHHHHHHH-HHcCc
Confidence 367999999998643344444444 44454
No 86
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=29.84 E-value=52 Score=31.99 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHcCCeEEEEcC
Q 006271 188 YDVFDYFEDVREQGGRVFVHCC 209 (653)
Q Consensus 188 ~~av~fI~~~~~~ggrVLVHC~ 209 (653)
.-++.+++++...|.||||+|.
T Consensus 16 ~~~c~L~~k~~~~G~rvlI~~~ 37 (144)
T COG2927 16 AAACRLAEKAWRSGWRVLIQCE 37 (144)
T ss_pred HHHHHHHHHHHHcCCeEEEEeC
Confidence 3789999999999999999995
No 87
>KOG0235 consensus Phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=29.61 E-value=1.8e+02 Score=30.15 Aligned_cols=52 Identities=17% Similarity=0.227 Sum_probs=35.2
Q ss_pred CCCchHHHHHHHHHHHHHHH----HcCCeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHH
Q 006271 179 PSEDITSILYDVFDYFEDVR----EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQ 236 (653)
Q Consensus 179 ~~~dl~~~L~~av~fI~~~~----~~ggrVLVHC~aGiSRSatVViAYLM~~~g~SleeAl~ 236 (653)
..+.+...+.+++.|+++.+ .+|++|+|+|++. .+=+++|+..|.+.++.+.
T Consensus 130 ~~EsL~~~~~R~~~~~~e~i~~~~~~gk~Vli~aHGn------sLR~i~~~l~g~s~~~i~~ 185 (214)
T KOG0235|consen 130 DGESLKDCLDRLLPFWNEEIAKESKEGKNVLIVAHGN------SLRAIVKHLEGISDEAIKE 185 (214)
T ss_pred CCccHHHHHHHHHHHHHHhhhhhhcCCcEEEEEcCcH------HHHHHHHHHhcCCHhhhhh
Confidence 34566677788888877654 4689999999863 2445566667777655443
No 88
>PF01807 zf-CHC2: CHC2 zinc finger; InterPro: IPR002694 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents CycHisCysCys (CHC2) type zinc finger domains, which are found in bacteria and viruses. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0003896 DNA primase activity, 0008270 zinc ion binding, 0006260 DNA replication; PDB: 1D0Q_B 2AU3_A.
Probab=29.44 E-value=54 Score=29.29 Aligned_cols=38 Identities=26% Similarity=0.527 Sum_probs=25.9
Q ss_pred EEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHHcCc
Q 006271 205 FVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGV 244 (653)
Q Consensus 205 LVHC~aGiSRSatVViAYLM~~~g~SleeAl~~Vr~~RP~ 244 (653)
..||.+ -+..+- ++.++|..+++++.+|++++.+.-..
T Consensus 54 ~~~Cf~-Cg~~Gd-~i~~v~~~~~~~f~eAv~~l~~~~~i 91 (97)
T PF01807_consen 54 RFKCFG-CGKGGD-VIDFVMKYEGCSFKEAVKWLAEEFGI 91 (97)
T ss_dssp EEEETT-T--EE--HHHHHHHHHT--HHHHHHHHHHHHT-
T ss_pred eEEECC-CCCCCc-HHhHHHHHhCCCHHHHHHHHHHHhCC
Confidence 688984 456654 57788999999999999999876543
No 89
>PRK14116 gpmA phosphoglyceromutase; Provisional
Probab=26.95 E-value=1.3e+02 Score=30.61 Aligned_cols=50 Identities=24% Similarity=0.363 Sum_probs=34.7
Q ss_pred CCchHHHHHHHHHHHHHHHH----cCCeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHH
Q 006271 180 SEDITSILYDVFDYFEDVRE----QGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAF 235 (653)
Q Consensus 180 ~~dl~~~L~~av~fI~~~~~----~ggrVLVHC~aGiSRSatVViAYLM~~~g~SleeAl 235 (653)
.+.+.....++..++++.+. .+++|||-|++|+-|+ +++|++ |+++++..
T Consensus 149 GEs~~~~~~Rv~~~l~~~i~~~~~~~~~vlvVsHg~vir~---ll~~~~---~~~~~~~~ 202 (228)
T PRK14116 149 GENLKVTLERVIPFWEDHIAPDLLDGKNVIIAAHGNSLRA---LTKYIE---NISDEDIM 202 (228)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhhcCCCeEEEEcChHHHHH---HHHHHh---CCCHHHHH
Confidence 46677777888888887542 4689999999998765 344433 66766533
No 90
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=26.90 E-value=66 Score=30.52 Aligned_cols=24 Identities=29% Similarity=0.274 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHcCCeEEEEcCC
Q 006271 187 LYDVFDYFEDVREQGGRVFVHCCQ 210 (653)
Q Consensus 187 L~~av~fI~~~~~~ggrVLVHC~a 210 (653)
..-+++.++++.++|++|+|+|..
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d 38 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPD 38 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SS
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCC
Confidence 466889999999999999999953
No 91
>PRK13938 phosphoheptose isomerase; Provisional
Probab=26.34 E-value=1.4e+02 Score=30.16 Aligned_cols=42 Identities=17% Similarity=0.101 Sum_probs=31.9
Q ss_pred CchHHHHHHHHHHHHHHHHcCCeEEEEcCCCCchHHHHHHHHHHh
Q 006271 181 EDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMW 225 (653)
Q Consensus 181 ~dl~~~L~~av~fI~~~~~~ggrVLVHC~aGiSRSatVViAYLM~ 225 (653)
..+.+.+.++.+.+.+++++|++|+|. |.|+|+.++..+-++
T Consensus 25 ~~~~~~~~~~a~~~~~~l~~g~rI~i~---G~G~S~~~A~~fa~~ 66 (196)
T PRK13938 25 RVLLEAARAIGDRLIAGYRAGARVFMC---GNGGSAADAQHFAAE 66 (196)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHHHHHHHHH
Confidence 345567788888888899999999987 888887766555433
No 92
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=25.92 E-value=78 Score=27.21 Aligned_cols=27 Identities=26% Similarity=0.428 Sum_probs=17.8
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHhhcCC
Q 006271 200 QGGRVFVHCCQGVSRSTSLVIAYLMWREGQ 229 (653)
Q Consensus 200 ~ggrVLVHC~aGiSRSatVViAYLM~~~g~ 229 (653)
.+.+|+|+|..|. ||.. ++.+| +..|.
T Consensus 55 ~~~~iv~~c~~G~-rs~~-aa~~L-~~~G~ 81 (95)
T cd01534 55 RGARIVLADDDGV-RADM-TASWL-AQMGW 81 (95)
T ss_pred CCCeEEEECCCCC-hHHH-HHHHH-HHcCC
Confidence 3679999999986 6643 33344 45555
No 93
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=25.65 E-value=83 Score=30.74 Aligned_cols=27 Identities=7% Similarity=0.065 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHcCCeEEEEcCCC
Q 006271 185 SILYDVFDYFEDVREQGGRVFVHCCQG 211 (653)
Q Consensus 185 ~~L~~av~fI~~~~~~ggrVLVHC~aG 211 (653)
..+.-+++.++++.++|.+|+|+|...
T Consensus 13 ~~~~~acrL~~Ka~~~G~rv~I~~~d~ 39 (154)
T PRK06646 13 LLLKSILLLIEKCYYSDLKSVILTADA 39 (154)
T ss_pred hHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 445678999999999999999999643
No 94
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=24.43 E-value=1.1e+02 Score=32.76 Aligned_cols=17 Identities=24% Similarity=0.493 Sum_probs=14.6
Q ss_pred eEEEEcCCCCchHHHHH
Q 006271 203 RVFVHCCQGVSRSTSLV 219 (653)
Q Consensus 203 rVLVHC~aGiSRSatVV 219 (653)
.|-|=|++|..||++++
T Consensus 245 TIaIGCTGGqHRSV~ia 261 (286)
T COG1660 245 TIAIGCTGGQHRSVYIA 261 (286)
T ss_pred EEEEccCCCccchHHHH
Confidence 46688999999999876
No 95
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=22.86 E-value=1.1e+02 Score=34.06 Aligned_cols=15 Identities=27% Similarity=0.603 Sum_probs=12.0
Q ss_pred HHHcCCeEEEEcCCC
Q 006271 197 VREQGGRVFVHCCQG 211 (653)
Q Consensus 197 ~~~~ggrVLVHC~aG 211 (653)
.+..|..||.||.+|
T Consensus 163 ~I~dg~~ILThcnsg 177 (363)
T PRK05772 163 KLNDGDTVLTQCNAG 177 (363)
T ss_pred hcCCCCEEEEecCCc
Confidence 345688999999887
No 96
>PRK14118 gpmA phosphoglyceromutase; Provisional
Probab=22.84 E-value=1.7e+02 Score=29.88 Aligned_cols=50 Identities=26% Similarity=0.360 Sum_probs=34.0
Q ss_pred CCchHHHHHHHHHHHHHHHH----cCCeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHH
Q 006271 180 SEDITSILYDVFDYFEDVRE----QGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAF 235 (653)
Q Consensus 180 ~~dl~~~L~~av~fI~~~~~----~ggrVLVHC~aGiSRSatVViAYLM~~~g~SleeAl 235 (653)
.+.+.....++.+++++.+. .+++|||-|++|+-|+ ++++++ |++.++..
T Consensus 148 GEs~~~~~~Rv~~~l~~~~~~~~~~~~~vlvVsHggvir~---ll~~~l---~~~~~~~~ 201 (227)
T PRK14118 148 AENLKVTLERVLPFWEDQIAPALLSGKRVLVAAHGNSLRA---LAKHIE---GISDADIM 201 (227)
T ss_pred CCCHHHHHHHHHHHHHHHHhhhhcCCCeEEEEeCHHHHHH---HHHHHh---CCCHHHHh
Confidence 46677778888888877543 4689999999997664 333333 66666543
No 97
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=22.51 E-value=1e+02 Score=26.71 Aligned_cols=27 Identities=30% Similarity=0.380 Sum_probs=18.6
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHhhcCC
Q 006271 200 QGGRVFVHCCQGVSRSTSLVIAYLMWREGQ 229 (653)
Q Consensus 200 ~ggrVLVHC~aGiSRSatVViAYLM~~~g~ 229 (653)
++..|+|+|..|. ||.. +++++...|.
T Consensus 65 ~~~~ivv~c~~g~-~s~~--~~~~l~~~G~ 91 (106)
T cd01519 65 KDKELIFYCKAGV-RSKA--AAELARSLGY 91 (106)
T ss_pred CCCeEEEECCCcH-HHHH--HHHHHHHcCC
Confidence 4689999999986 6533 3455555565
No 98
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=21.87 E-value=2.1e+02 Score=25.44 Aligned_cols=19 Identities=11% Similarity=0.076 Sum_probs=13.9
Q ss_pred cCCeEEEEcCCCCchHHHH
Q 006271 200 QGGRVFVHCCQGVSRSTSL 218 (653)
Q Consensus 200 ~ggrVLVHC~aGiSRSatV 218 (653)
....|+|||..|-.||+.+
T Consensus 65 ~~~~iv~~C~~~g~rs~~a 83 (113)
T cd01443 65 GVKLAIFYCGSSQGRGPRA 83 (113)
T ss_pred CCCEEEEECCCCCcccHHH
Confidence 3478999999865677543
No 99
>PHA02540 61 DNA primase; Provisional
Probab=21.68 E-value=1.2e+02 Score=33.44 Aligned_cols=39 Identities=18% Similarity=0.177 Sum_probs=31.0
Q ss_pred CeEEEEcC-CCCchHHHHHHHHHHhhcCCCHHHHHHHHHHHcC
Q 006271 202 GRVFVHCC-QGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARG 243 (653)
Q Consensus 202 grVLVHC~-aGiSRSatVViAYLM~~~g~SleeAl~~Vr~~RP 243 (653)
+....||. .|.+.. ++.|||...++++.||++.+.+..-
T Consensus 52 ~~~~yhCFgCGa~Gd---~i~Flme~e~lsf~Eav~~la~~~g 91 (337)
T PHA02540 52 DGGVFKCHNCGYHRP---FGNFLKDYEPDLYREYIMERFKERG 91 (337)
T ss_pred CceEEEecCCCCCCC---HHHHHHHhcCCChHHHHHHHHHHhC
Confidence 36789997 566554 8899999999999999997766553
No 100
>cd04445 DEP_PLEK1 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 1-like proteins. Pleckstrin 1 plays a role in cell spreading and reorganization of actin cytoskeleton in platelets and leukocytes. Its activity is highly regulated by phosphorylation, mainly by protein kinase C. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=21.20 E-value=80 Score=28.77 Aligned_cols=36 Identities=25% Similarity=0.497 Sum_probs=28.9
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHhhcCCC-HHHHHHHHHH
Q 006271 200 QGGRVFVHCCQGVSRSTSLVIAYLMWREGQS-FEDAFQYVKA 240 (653)
Q Consensus 200 ~ggrVLVHC~aGiSRSatVViAYLM~~~g~S-leeAl~~Vr~ 240 (653)
..++|+=||..| +-|+.||+...... -.||+..-..
T Consensus 23 ~~~tv~~hcftG-----sdVVdWLv~~~~v~~r~EAl~las~ 59 (99)
T cd04445 23 KDKKVFNHCFTG-----SCVIDWLVSNQSVRNRQEGLMLASS 59 (99)
T ss_pred Hhhccccceecc-----cHHHHHHHHhhcccchHHHHHHHHH
Confidence 458999999988 45999999998885 7888876543
No 101
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=21.17 E-value=1.2e+02 Score=26.37 Aligned_cols=26 Identities=12% Similarity=0.165 Sum_probs=17.0
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHhhcCC
Q 006271 201 GGRVFVHCCQGVSRSTSLVIAYLMWREGQ 229 (653)
Q Consensus 201 ggrVLVHC~aGiSRSatVViAYLM~~~g~ 229 (653)
+..|+|+|..|. ||..+ |+.+...|.
T Consensus 65 ~~~vv~~c~~g~-~s~~~--a~~L~~~G~ 90 (105)
T cd01525 65 GKIIVIVSHSHK-HAALF--AAFLVKCGV 90 (105)
T ss_pred CCeEEEEeCCCc-cHHHH--HHHHHHcCC
Confidence 678999999986 66443 333444454
No 102
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=20.84 E-value=1.3e+02 Score=33.17 Aligned_cols=19 Identities=32% Similarity=0.557 Sum_probs=14.9
Q ss_pred HHcCCeEEEEcCCCCchHH
Q 006271 198 REQGGRVFVHCCQGVSRST 216 (653)
Q Consensus 198 ~~~ggrVLVHC~aGiSRSa 216 (653)
+..|..||.||..|..+++
T Consensus 145 I~~g~~ILThc~sg~lat~ 163 (339)
T PRK06036 145 LEDGDTVLTHCNAGRLACV 163 (339)
T ss_pred ccCCCEEEEecCCcccccc
Confidence 4467899999999976653
No 103
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=20.81 E-value=1.5e+02 Score=29.80 Aligned_cols=32 Identities=13% Similarity=0.183 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEEEEcCCCCchHHH
Q 006271 183 ITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTS 217 (653)
Q Consensus 183 l~~~L~~av~fI~~~~~~ggrVLVHC~aGiSRSat 217 (653)
+...+.++.+.|-+++.+|++||++ |.|+|++
T Consensus 23 l~~~I~~aa~~i~~~l~~G~Kvl~c---GNGgSaa 54 (176)
T COG0279 23 LIEAIERAAQLLVQSLLNGNKVLAC---GNGGSAA 54 (176)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEEEE---CCCcchh
Confidence 3455677777888888999999986 5556643
No 104
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=20.77 E-value=1.1e+02 Score=26.38 Aligned_cols=28 Identities=14% Similarity=0.106 Sum_probs=18.5
Q ss_pred HcCCeEEEEcCCCCchHHHHHHHHHHhhcCC
Q 006271 199 EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQ 229 (653)
Q Consensus 199 ~~ggrVLVHC~aGiSRSatVViAYLM~~~g~ 229 (653)
..+.+|+|+|..| .||.. ++.+| +..|.
T Consensus 54 ~~~~~ivv~c~~g-~~s~~-~~~~l-~~~G~ 81 (96)
T cd01529 54 GRATRYVLTCDGS-LLARF-AAQEL-LALGG 81 (96)
T ss_pred CCCCCEEEEeCCh-HHHHH-HHHHH-HHcCC
Confidence 4568999999877 47744 34444 44464
No 105
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=20.48 E-value=1.1e+02 Score=26.17 Aligned_cols=29 Identities=17% Similarity=0.179 Sum_probs=18.8
Q ss_pred HHcCCeEEEEcCCCCchHHHHHHHHHHhhcCC
Q 006271 198 REQGGRVFVHCCQGVSRSTSLVIAYLMWREGQ 229 (653)
Q Consensus 198 ~~~ggrVLVHC~aGiSRSatVViAYLM~~~g~ 229 (653)
+..+.+|+|+|..|. ||.. ++.++...|.
T Consensus 58 ~~~~~~ivv~c~~g~-~s~~--~~~~l~~~G~ 86 (103)
T cd01447 58 FAEDKPFVFYCASGW-RSAL--AGKTLQDMGL 86 (103)
T ss_pred CCCCCeEEEEcCCCC-cHHH--HHHHHHHcCh
Confidence 356789999999884 7643 3444455453
Done!